BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018199
(359 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QV7|A Chain A, Crystal Structure Of Diacylglycerol Kinase Dgkb In Complex
With Adp And Mg
pdb|2QVL|A Chain A, Crystal Structure Of Diacylglycerol Kinase
Length = 337
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 105/245 (42%), Gaps = 23/245 (9%)
Query: 117 TLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRNDPYEAVERIAKG 176
TL+EVVNG E + LG+IP GT +DF R ND A++ I +G
Sbjct: 92 TLNEVVNGI-----------AEKPNRPKLGVIPXGTVNDFGRALHIPNDIXGALDVIIEG 140
Query: 177 VRSWVDVGVINGETGEPHYFINVADLHLSAKAGYYA-SRYKRF-GNLCYVIGALQAFMGH 234
+ VD+G N YFIN+A + Y S+ K G Y I +
Sbjct: 141 HSTKVDIGKXNN-----RYFINLAAGGQLTQVSYETPSKLKSIVGPFAYYIKGFEXLPQX 195
Query: 235 RNQDLRVKVNEGEWEEYSQVTALCIGNAKYFGGGMKITPNADPRNGYFEVVILQDFKWYD 294
+ DLR++ + ++ + + L + N+ G K+ P+A +GYF ++I++ +
Sbjct: 196 KAVDLRIEYDGNVFQGEALLFFLGLTNSX--AGFEKLVPDAKLDDGYFTLIIVEKSNLAE 253
Query: 295 FILKLLKLYNGTHLSVKNVTSRRAHSIEVEDISSGDSIYVQSDGEHLGFLPRKLCVLPAA 354
G H V +A +I +ISS + + DGE+ G LP L
Sbjct: 254 LGHIXTLASRGEHTKHPKVIYEKAKAI---NISSFTDLQLNVDGEYGGKLPANFLNLERH 310
Query: 355 IEMIC 359
I++
Sbjct: 311 IDVFA 315
>pdb|3T5P|A Chain A, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|B Chain B, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|C Chain C, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|D Chain D, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|E Chain E, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|F Chain F, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|G Chain G, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|H Chain H, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|I Chain I, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|J Chain J, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|K Chain K, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|L Chain L, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
Length = 306
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 71/324 (21%), Positives = 134/324 (41%), Gaps = 42/324 (12%)
Query: 37 SHGAASSSRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAID 96
+ A + ++ ++ +VNP+ G K++P L + D +I + G D
Sbjct: 3 QNSAXTKTKFEKVLLIVNPKAGQGDLHTNLTKIVPPLAAAFP-DLHILHTKEQG-----D 56
Query: 97 ITR--EAIKEXXXXXXXXXXXXTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGS 154
T+ + T+ E NG L R + L +IP GT +
Sbjct: 57 ATKYCQEFASKVDLIIVFGGDGTVFECTNG------LAPLEIRPT-----LAIIPGGTCN 105
Query: 155 DFARTFGWRNDPYEAVERIAKGVRSWVDVGVINGETGEPHYFINVADLHLSAKA--GYYA 212
DF+RT G + EA + I K VDV NG+ +F+N + L ++ A
Sbjct: 106 DFSRTLGVPQNIAEAAKLITKEHVKPVDVAKANGQ-----HFLNFWGIGLVSEVSNNIDA 160
Query: 213 SRYKRFGNLCYVIGALQAFMGHRNQDLRVKVNEGEWEEYSQVTALCIGNAKYFGGGMKIT 272
+ G + Y + ++ +++ + +E+ + + +GN +Y GG
Sbjct: 161 EEKAKLGKIGYYLSTIRTVKNAETFPVKITYDGQVYED--EAVLVXVGNGEYLGGIPSFI 218
Query: 273 PNADPRNGYFEVVI-----LQDFKWYDFILKLLKLYNGTHLSVKNVTSRRAHSIEVEDIS 327
PN +G ++ + +Q FK D+I K KL+ ++ + ++ +A SI +E
Sbjct: 219 PNVKCDDGTLDIFVVKSTGIQAFK--DYIGK--KLFEDSNEN--DIFHVKAKSIHIE--- 269
Query: 328 SGDSIYVQSDGEHLGFLPRKLCVL 351
+ + V +DGE P ++ +L
Sbjct: 270 TEEEKEVDTDGESSLHTPCQIELL 293
>pdb|3S40|A Chain A, The Crystal Structure Of A Diacylglycerol Kinases From
Bacillus Anthracis Str. Sterne
pdb|3S40|B Chain B, The Crystal Structure Of A Diacylglycerol Kinases From
Bacillus Anthracis Str. Sterne
pdb|3S40|C Chain C, The Crystal Structure Of A Diacylglycerol Kinases From
Bacillus Anthracis Str. Sterne
pdb|3S40|D Chain D, The Crystal Structure Of A Diacylglycerol Kinases From
Bacillus Anthracis Str. Sterne
Length = 304
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 69/310 (22%), Positives = 128/310 (41%), Gaps = 42/310 (13%)
Query: 39 GAASSSRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDIT 98
G + ++ ++ +VNP+ G K++P L + D +I + G D T
Sbjct: 1 GHXTKTKFEKVLLIVNPKAGQGDLHTNLTKIVPPLAAAFP-DLHILHTKEQG-----DAT 54
Query: 99 R--EAIKEXXXXXXXXXXXXTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDF 156
+ + T+ E NG L R + L +IP GT +DF
Sbjct: 55 KYCQEFASKVDLIIVFGGDGTVFECTNG------LAPLEIRPT-----LAIIPGGTCNDF 103
Query: 157 ARTFGWRNDPYEAVERIAKGVRSWVDVGVINGETGEPHYFINVADLHLSAKA--GYYASR 214
+RT G + EA + I K VDV NG+ +F+N + L ++ A
Sbjct: 104 SRTLGVPQNIAEAAKLITKEHVKPVDVAKANGQ-----HFLNFWGIGLVSEVSNNIDAEE 158
Query: 215 YKRFGNLCYVIGALQAFMGHRNQDLRVKVNEGEWEEYSQVTALCIGNAKYFGGGMKITPN 274
+ G + Y + ++ +++ + +E+ + + +GN +Y GG PN
Sbjct: 159 KAKLGKIGYYLSTIRTVKNAETFPVKITYDGQVYED--EAVLVXVGNGEYLGGIPSFIPN 216
Query: 275 ADPRNGYFEVVI-----LQDFKWYDFILKLLKLYNGTHLSVKNVTSRRAHSIEVEDISSG 329
+G ++ + +Q FK D+I K KL+ ++ + ++ +A SI +E +
Sbjct: 217 VKCDDGTLDIFVVKSTGIQAFK--DYIGK--KLFEDSNEN--DIFHVKAKSIHIE---TE 267
Query: 330 DSIYVQSDGE 339
+ V +DGE
Sbjct: 268 EEKEVDTDGE 277
>pdb|2BON|A Chain A, Structure Of An Escherichia Coli Lipid Kinase (Yegs)
pdb|2BON|B Chain B, Structure Of An Escherichia Coli Lipid Kinase (Yegs)
Length = 332
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 90/214 (42%), Gaps = 15/214 (7%)
Query: 144 ALGLIPLGTGSDFARTFGWRNDPYEAVERIAKGVRSWVDVGVINGETGEPHYFINVADLH 203
ALG++PLGT +DFA + G +A++ G +D+ +N +T FIN+A
Sbjct: 112 ALGILPLGTANDFATSVGIPEALDKALKLAIAGDAIAIDMAQVNKQT----CFINMATGG 167
Query: 204 LSAKAGYYASRYKR--FGNLCYVIGALQAFMGHRNQDLRVKVNEGEWEEYSQVTALCIGN 261
+ + G++ Y+I L + ++ W+ + V + IGN
Sbjct: 168 FGTRITTETPEKLKAALGSVSYIIHGLMRMDTLQPDRCEIRGENFHWQGDALV--IGIGN 225
Query: 262 AKYFGGGMKITPNADPRNGYFEVVILQDFKWYDFILKLLKLYNGTHLSVKNVTSRRAHSI 321
+ GGG ++ PNA +G ++ I + ++ LK ++ +S
Sbjct: 226 GRQAGGGQQLCPNALINDGLLQLRIFTGDEILPALVSTLKSDEDNPNIIEGASSWF---- 281
Query: 322 EVEDISSGDSIYVQSDGEHLGFLPRKLCVLPAAI 355
DI + I DGE L + +LPAA+
Sbjct: 282 ---DIQAPHDITFNLDGEPLSGQNFHIEILPAAL 312
>pdb|2JGR|A Chain A, Crystal Structure Of Yegs In Complex With Adp
Length = 299
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 88/214 (41%), Gaps = 15/214 (7%)
Query: 144 ALGLIPLGTGSDFARTFGWRNDPYEAVERIAKGVRSWVDVGVINGETGEPHYFINVADLH 203
ALG++PLGT +DFA + G +A++ G +D +N +T FIN A
Sbjct: 87 ALGILPLGTANDFATSVGIPEALDKALKLAIAGDAIAIDXAQVNKQT----CFINXATGG 142
Query: 204 LSAKAGYYASRYKR--FGNLCYVIGALQAFMGHRNQDLRVKVNEGEWEEYSQVTALCIGN 261
+ + G++ Y+I L + ++ W+ + V + IGN
Sbjct: 143 FGTRITTETPEKLKAALGSVSYIIHGLXRXDTLQPDRCEIRGENFHWQGDALV--IGIGN 200
Query: 262 AKYFGGGMKITPNADPRNGYFEVVILQDFKWYDFILKLLKLYNGTHLSVKNVTSRRAHSI 321
+ GGG ++ PNA +G ++ I + ++ LK ++ +S
Sbjct: 201 GRQAGGGQQLCPNALINDGLLQLRIFTGDEILPALVSTLKSDEDNPNIIEGASSWF---- 256
Query: 322 EVEDISSGDSIYVQSDGEHLGFLPRKLCVLPAAI 355
DI + I DGE L + +LPAA+
Sbjct: 257 ---DIQAPHDITFNLDGEPLSGQNFHIEILPAAL 287
>pdb|2P1R|A Chain A, Crystal Structure Of Salmonella Typhimurium Yegs, A
Putative Lipid Kinase Homologous To Eukaryotic
Sphingosine And Diacylglycerol Kinases.
pdb|2P1R|B Chain B, Crystal Structure Of Salmonella Typhimurium Yegs, A
Putative Lipid Kinase Homologous To Eukaryotic
Sphingosine And Diacylglycerol Kinases.
pdb|2P1R|C Chain C, Crystal Structure Of Salmonella Typhimurium Yegs, A
Putative Lipid Kinase Homologous To Eukaryotic
Sphingosine And Diacylglycerol Kinases.
pdb|2P1R|D Chain D, Crystal Structure Of Salmonella Typhimurium Yegs, A
Putative Lipid Kinase Homologous To Eukaryotic
Sphingosine And Diacylglycerol Kinases
Length = 299
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 83/214 (38%), Gaps = 15/214 (7%)
Query: 144 ALGLIPLGTGSDFARTFGWRNDPYEAVERIAKGVRSWVDVGVINGETGEPHYFINVADLH 203
ALGL+PLGT +DFA + G +A++ G +D +N +T FIN A
Sbjct: 87 ALGLLPLGTANDFATSAGIPEALDKALKLAIAGNAXEIDXAXVNDKT----CFINXATGG 142
Query: 204 LSAKAGYYASRYKR--FGNLCYVIGALQAFMGHRNQDLRVKVNEGEWEEYSQVTALCIGN 261
+ + G + Y+I L ++ W+ + V + IGN
Sbjct: 143 FGTRITTETPEKLKAALGGVSYLIHGLXRXDTLTPDRCEIRGENFHWQGDALV--IGIGN 200
Query: 262 AKYFGGGMKITPNADPRNGYFEVVILQDFKWYDFILKLLKLYNGTHLSVKNVTSRRAHSI 321
+ GGG ++ P A +G ++ I F + + L + + + A
Sbjct: 201 GRQAGGGQQLCPTALINDGLLQLRI---FTGEELLPALFSTLTQSDDNPNIIDGASAWF- 256
Query: 322 EVEDISSGDSIYVQSDGEHLGFLPRKLCVLPAAI 355
DI + I DGE L + VLP A+
Sbjct: 257 ---DIHAPHEITFNLDGEPLSGQEFHIEVLPGAL 287
>pdb|2NNY|A Chain A, Crystal Structure Of The Ets1 Dimer Dna Complex.
pdb|2NNY|B Chain B, Crystal Structure Of The Ets1 Dimer Dna Complex
Length = 171
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 150 LGTGSDFARTFGWR-NDPYEAVERIAKGVRSWVDVGVINGETGEPHYFINVADLH 203
L + AR +G R N P E++++G+R + D +I+ G+ + + V+DL
Sbjct: 95 LSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVSDLQ 149
>pdb|1R36|A Chain A, Nmr-Based Structure Of Autoinhibited Murine Ets-1
Deltan301
Length = 140
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 150 LGTGSDFARTFGWR-NDPYEAVERIAKGVRSWVDVGVINGETGEPHYFINVADLH 203
L + AR +G R N P E++++G+R + D +I+ G+ + + V+DL
Sbjct: 65 LSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVSDLQ 119
>pdb|1K78|B Chain B, Pax5(1-149)+ets-1(331-440)+dna
pdb|1K78|F Chain F, Pax5(1-149)+ets-1(331-440)+dna
pdb|1K79|A Chain A, Ets-1(331-440)+ggaa Duplex
pdb|1K79|D Chain D, Ets-1(331-440)+ggaa Duplex
pdb|1K7A|A Chain A, Ets-1(331-440)+ggag Duplex
pdb|1K7A|D Chain D, Ets-1(331-440)+ggag Duplex
Length = 110
Score = 28.9 bits (63), Expect = 4.0, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 150 LGTGSDFARTFGWR-NDPYEAVERIAKGVRSWVDVGVINGETGEPHYFINVADLH 203
L + AR +G R N P E++++G+R + D +I+ G+ + + V DL
Sbjct: 35 LSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQ 89
>pdb|1GVJ|A Chain A, Ets-1 Dna Binding And Autoinhibitory Domains
pdb|1GVJ|B Chain B, Ets-1 Dna Binding And Autoinhibitory Domains
Length = 146
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 150 LGTGSDFARTFGWR-NDPYEAVERIAKGVRSWVDVGVINGETGEPHYFINVADLH 203
L + AR +G R N P E++++G+R + D +I+ G+ + + V DL
Sbjct: 70 LSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQ 124
>pdb|1MD0|A Chain A, Crystal Structure Of An Inhibited Fragment Of Ets-1
pdb|1MD0|B Chain B, Crystal Structure Of An Inhibited Fragment Of Ets-1
Length = 141
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 150 LGTGSDFARTFGWR-NDPYEAVERIAKGVRSWVDVGVINGETGEPHYFINVADLH 203
L + AR +G R N P E++++G+R + D +I+ G+ + + V DL
Sbjct: 66 LSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQ 120
>pdb|3RI4|A Chain A, Ets1 Cooperative Binding To Widely Separated Sites On
Promoter Dna
pdb|3RI4|D Chain D, Ets1 Cooperative Binding To Widely Separated Sites On
Promoter Dna
Length = 163
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 150 LGTGSDFARTFGWR-NDPYEAVERIAKGVRSWVDVGVINGETGEPHYFINVADLH 203
L + AR +G R N P E++++G+R + D +I+ G+ + + V DL
Sbjct: 87 LSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQ 141
>pdb|3MFK|A Chain A, Ets1 Complex With Stromelysin-1 Promoter Dna
pdb|3MFK|B Chain B, Ets1 Complex With Stromelysin-1 Promoter Dna
Length = 162
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 150 LGTGSDFARTFGWR-NDPYEAVERIAKGVRSWVDVGVINGETGEPHYFINVADLH 203
L + AR +G R N P E++++G+R + D +I+ G+ + + V DL
Sbjct: 86 LSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQ 140
>pdb|1MDM|B Chain B, Inhibited Fragment Of Ets-1 And Paired Domain Of Pax5
Bound To Dna
Length = 161
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 150 LGTGSDFARTFGWR-NDPYEAVERIAKGVRSWVDVGVINGETGEPHYFINVADLH 203
L + AR +G R N P E++++G+R + D +I+ G+ + + V DL
Sbjct: 86 LSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQ 140
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,013,239
Number of Sequences: 62578
Number of extensions: 457730
Number of successful extensions: 1026
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1014
Number of HSP's gapped (non-prelim): 14
length of query: 359
length of database: 14,973,337
effective HSP length: 100
effective length of query: 259
effective length of database: 8,715,537
effective search space: 2257324083
effective search space used: 2257324083
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)