Query 018199
Match_columns 359
No_of_seqs 241 out of 1243
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 06:58:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018199.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018199hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11914 diacylglycerol kinase 100.0 2.8E-60 6E-65 444.3 35.7 295 43-359 5-302 (306)
2 PRK13059 putative lipid kinase 100.0 1.5E-59 3.2E-64 436.4 34.5 288 46-359 1-291 (295)
3 PRK13337 putative lipid kinase 100.0 2.2E-59 4.9E-64 437.4 34.0 290 46-359 1-292 (304)
4 PRK13055 putative lipid kinase 100.0 9.2E-59 2E-63 437.9 33.6 292 46-359 2-299 (334)
5 PRK13057 putative lipid kinase 100.0 4.4E-58 9.5E-63 425.5 33.9 281 50-359 1-283 (287)
6 PLN02958 diacylglycerol kinase 100.0 3.2E-58 7E-63 450.3 32.8 334 12-358 77-463 (481)
7 PRK00861 putative lipid kinase 100.0 2.9E-57 6.2E-62 422.8 33.7 287 46-359 2-295 (300)
8 PRK13054 lipid kinase; Reviewe 100.0 3.9E-57 8.5E-62 421.6 33.3 288 45-359 2-292 (300)
9 TIGR03702 lip_kinase_YegS lipi 100.0 1.1E-56 2.3E-61 417.2 34.2 284 48-359 1-286 (293)
10 COG1597 LCB5 Sphingosine kinas 100.0 1.7E-56 3.7E-61 414.5 31.7 290 45-359 1-294 (301)
11 TIGR00147 lipid kinase, YegS/R 100.0 3.9E-56 8.4E-61 414.2 33.9 290 46-359 1-293 (293)
12 PLN02204 diacylglycerol kinase 100.0 3.1E-52 6.7E-57 406.0 34.2 312 43-359 156-596 (601)
13 PRK12361 hypothetical protein; 100.0 5.7E-50 1.2E-54 401.6 32.5 283 46-359 242-540 (547)
14 KOG1116 Sphingosine kinase, in 100.0 3.8E-48 8.2E-53 370.0 26.6 311 38-359 171-565 (579)
15 KOG1115 Ceramide kinase [Lipid 100.0 1.3E-36 2.7E-41 276.7 16.9 313 43-358 155-506 (516)
16 KOG0782 Predicted diacylglycer 100.0 3.9E-27 8.4E-32 222.2 18.4 277 40-348 359-683 (1004)
17 PF00781 DAGK_cat: Diacylglyce 99.9 5.9E-27 1.3E-31 191.7 14.0 127 48-188 1-129 (130)
18 KOG1169 Diacylglycerol kinase 99.9 1.4E-26 3.1E-31 225.2 18.3 291 40-353 265-611 (634)
19 smart00046 DAGKc Diacylglycero 99.9 4.7E-23 1E-27 166.9 9.7 108 50-172 1-108 (124)
20 KOG4435 Predicted lipid kinase 99.9 1.4E-23 3.1E-28 191.3 2.6 196 24-234 36-245 (535)
21 smart00045 DAGKa Diacylglycero 99.8 1.2E-19 2.5E-24 153.7 7.7 134 196-340 2-160 (160)
22 PF00609 DAGK_acc: Diacylglyce 99.5 1.8E-13 3.8E-18 115.9 10.8 133 196-340 2-161 (161)
23 KOG1170 Diacylglycerol kinase 99.4 3.8E-13 8.1E-18 132.6 7.7 145 196-351 615-782 (1099)
24 PRK03708 ppnK inorganic polyph 99.3 1.1E-10 2.4E-15 107.0 19.5 244 47-358 1-259 (277)
25 PRK02645 ppnK inorganic polyph 99.2 2.5E-09 5.5E-14 99.6 21.3 116 45-179 2-118 (305)
26 PRK03378 ppnK inorganic polyph 99.1 8.5E-09 1.9E-13 95.2 19.6 247 43-358 2-270 (292)
27 PRK14075 pnk inorganic polypho 98.9 6.6E-07 1.4E-11 81.4 21.9 225 47-358 1-234 (256)
28 PRK01231 ppnK inorganic polyph 98.9 5.9E-07 1.3E-11 83.3 20.7 248 44-358 2-270 (295)
29 COG3199 Predicted inorganic po 98.8 1.3E-08 2.9E-13 93.2 9.1 74 89-176 84-157 (355)
30 PRK03372 ppnK inorganic polyph 98.7 6.7E-06 1.5E-10 76.4 21.9 247 44-358 3-279 (306)
31 PRK02155 ppnK NAD(+)/NADH kina 98.6 1.6E-05 3.4E-10 73.7 21.8 247 44-358 3-269 (291)
32 PRK03501 ppnK inorganic polyph 98.5 2.5E-05 5.4E-10 71.1 21.0 234 46-358 2-248 (264)
33 PRK01911 ppnK inorganic polyph 98.5 2.7E-05 5.8E-10 72.1 21.2 239 47-358 1-269 (292)
34 PRK14077 pnk inorganic polypho 98.5 3E-05 6.5E-10 71.6 21.4 236 46-358 10-268 (287)
35 PRK02649 ppnK inorganic polyph 98.5 3.7E-05 7.9E-10 71.6 20.4 244 46-358 1-274 (305)
36 PRK04539 ppnK inorganic polyph 98.4 6.7E-05 1.5E-09 69.6 21.2 247 44-358 3-274 (296)
37 PRK04885 ppnK inorganic polyph 98.2 0.00053 1.1E-08 62.6 20.9 229 48-358 2-245 (265)
38 PRK00561 ppnK inorganic polyph 98.2 0.00053 1.1E-08 62.2 20.4 187 104-356 32-237 (259)
39 PRK01185 ppnK inorganic polyph 98.2 0.00036 7.8E-09 63.9 19.4 236 48-358 2-251 (271)
40 PF01513 NAD_kinase: ATP-NAD k 98.1 2.5E-06 5.4E-11 79.1 3.1 113 48-180 1-136 (285)
41 PRK14076 pnk inorganic polypho 98.0 0.0012 2.6E-08 67.1 22.3 247 42-358 286-553 (569)
42 PRK04761 ppnK inorganic polyph 97.9 0.0043 9.3E-08 55.9 19.9 36 105-153 25-60 (246)
43 PLN02727 NAD kinase 97.8 0.0042 9.2E-08 64.7 21.5 108 44-178 676-801 (986)
44 PRK02231 ppnK inorganic polyph 97.6 0.011 2.4E-07 54.1 18.6 193 104-358 41-251 (272)
45 PLN02935 Bifunctional NADH kin 97.5 0.001 2.3E-08 65.1 11.4 116 44-179 192-321 (508)
46 COG0061 nadF NAD kinase [Coenz 97.1 0.086 1.9E-06 48.7 19.0 189 104-358 54-261 (281)
47 PLN02929 NADH kinase 95.7 0.029 6.2E-07 52.0 6.8 62 104-179 63-140 (301)
48 KOG4180 Predicted kinase [Gene 92.7 0.073 1.6E-06 49.0 2.2 65 105-181 105-171 (395)
49 KOG2178 Predicted sugar kinase 92.5 1.1 2.5E-05 42.5 9.8 54 104-177 167-225 (409)
50 cd08173 Gro1PDH Sn-glycerol-1- 91.2 1.5 3.3E-05 41.6 9.5 87 47-152 26-112 (339)
51 cd08186 Fe-ADH8 Iron-containin 90.8 1.9 4.1E-05 41.7 9.9 111 46-162 26-149 (383)
52 cd08194 Fe-ADH6 Iron-containin 90.2 2.4 5.3E-05 40.8 10.0 73 46-125 23-99 (375)
53 PRK00843 egsA NAD(P)-dependent 90.1 2 4.4E-05 41.0 9.3 86 47-151 35-120 (350)
54 cd07766 DHQ_Fe-ADH Dehydroquin 89.5 2.3 5E-05 40.1 9.2 89 46-153 23-117 (332)
55 cd08191 HHD 6-hydroxyhexanoate 89.4 2.7 5.9E-05 40.7 9.8 106 47-159 23-140 (386)
56 cd08197 DOIS 2-deoxy-scyllo-in 89.4 3.1 6.7E-05 39.8 9.9 93 47-155 24-125 (355)
57 cd08176 LPO Lactadehyde:propan 89.2 2.2 4.8E-05 41.1 8.9 108 47-161 29-148 (377)
58 cd08187 BDH Butanol dehydrogen 89.0 2.2 4.7E-05 41.3 8.7 109 46-160 28-148 (382)
59 cd08181 PPD-like 1,3-propanedi 88.8 4 8.8E-05 39.0 10.3 107 47-159 26-143 (357)
60 cd08174 G1PDH-like Glycerol-1- 88.6 3.3 7.2E-05 39.1 9.5 86 46-154 25-111 (331)
61 cd08171 GlyDH-like2 Glycerol d 88.6 2 4.3E-05 40.9 8.1 84 47-150 23-110 (345)
62 cd08179 NADPH_BDH NADPH-depend 88.1 3.3 7.2E-05 39.9 9.3 107 47-159 24-145 (375)
63 cd08551 Fe-ADH iron-containing 87.8 2.1 4.6E-05 41.1 7.8 107 46-159 23-141 (370)
64 cd08170 GlyDH Glycerol dehydro 87.7 1.9 4.2E-05 41.1 7.3 92 47-156 23-117 (351)
65 cd08185 Fe-ADH1 Iron-containin 87.5 4.2 9.2E-05 39.2 9.6 110 47-162 26-152 (380)
66 PRK09860 putative alcohol dehy 87.4 5.4 0.00012 38.6 10.3 110 46-162 31-152 (383)
67 cd08550 GlyDH-like Glycerol_de 87.3 2.6 5.6E-05 40.2 8.0 86 47-150 23-109 (349)
68 cd08195 DHQS Dehydroquinate sy 87.2 3.7 8.1E-05 39.1 8.9 89 46-150 24-119 (345)
69 cd08180 PDD 1,3-propanediol de 87.1 4.1 9E-05 38.5 9.2 96 47-157 23-126 (332)
70 cd08172 GlyDH-like1 Glycerol d 87.0 2 4.3E-05 40.9 7.0 88 47-154 24-114 (347)
71 PF13685 Fe-ADH_2: Iron-contai 86.8 2.4 5.2E-05 38.4 7.0 92 46-157 19-115 (250)
72 PRK10624 L-1,2-propanediol oxi 86.6 6.4 0.00014 38.1 10.3 110 46-162 30-153 (382)
73 cd08169 DHQ-like Dehydroquinat 86.3 4.7 0.0001 38.4 9.1 93 46-155 23-124 (344)
74 cd08178 AAD_C C-terminal alcoh 85.9 4.2 9E-05 39.6 8.7 73 46-125 21-97 (398)
75 TIGR01357 aroB 3-dehydroquinat 85.8 6.4 0.00014 37.4 9.8 89 46-150 20-115 (344)
76 cd08189 Fe-ADH5 Iron-containin 84.3 4.4 9.6E-05 39.0 8.0 73 46-125 26-102 (374)
77 PTZ00286 6-phospho-1-fructokin 83.9 3.3 7.1E-05 41.0 6.9 74 92-173 163-239 (459)
78 cd08549 G1PDH_related Glycerol 83.6 7.8 0.00017 36.7 9.2 84 47-151 25-113 (332)
79 PF10254 Pacs-1: PACS-1 cytoso 83.6 5.1 0.00011 38.9 7.8 100 48-162 17-128 (414)
80 PRK00002 aroB 3-dehydroquinate 83.6 10 0.00022 36.3 10.1 87 46-150 31-126 (358)
81 cd08182 HEPD Hydroxyethylphosp 83.4 9.2 0.0002 36.7 9.8 69 47-125 24-96 (367)
82 cd08199 EEVS 2-epi-5-epi-valio 83.1 11 0.00024 36.0 10.1 88 45-150 25-122 (354)
83 cd08177 MAR Maleylacetate redu 82.3 3.9 8.5E-05 38.8 6.7 85 47-150 24-109 (337)
84 PRK09423 gldA glycerol dehydro 82.3 4.9 0.00011 38.6 7.4 86 47-150 30-116 (366)
85 PF00731 AIRC: AIR carboxylase 81.6 17 0.00036 30.2 9.2 65 58-125 8-76 (150)
86 PRK10586 putative oxidoreducta 81.5 13 0.00028 35.7 9.8 88 47-155 35-123 (362)
87 PRK06830 diphosphate--fructose 81.0 4.2 9E-05 40.0 6.4 72 93-172 160-234 (443)
88 cd08190 HOT Hydroxyacid-oxoaci 80.7 16 0.00034 35.8 10.4 71 47-124 24-98 (414)
89 cd08193 HVD 5-hydroxyvalerate 79.9 14 0.0003 35.6 9.6 106 46-158 26-143 (376)
90 PF00465 Fe-ADH: Iron-containi 79.7 6.3 0.00014 37.8 7.2 96 48-150 23-129 (366)
91 cd08175 G1PDH Glycerol-1-phosp 79.5 10 0.00022 36.0 8.5 85 46-151 23-113 (348)
92 PLN02564 6-phosphofructokinase 78.9 5.1 0.00011 39.8 6.3 63 93-163 164-229 (484)
93 PLN02834 3-dehydroquinate synt 78.7 16 0.00035 36.0 9.7 89 47-151 101-198 (433)
94 TIGR03405 Phn_Fe-ADH phosphona 78.1 11 0.00023 36.1 8.1 104 47-159 24-145 (355)
95 TIGR02483 PFK_mixed phosphofru 78.0 4.4 9.5E-05 38.3 5.3 57 93-163 82-141 (324)
96 cd00763 Bacterial_PFK Phosphof 77.5 4.9 0.00011 37.8 5.5 52 92-157 79-130 (317)
97 cd08192 Fe-ADH7 Iron-containin 74.5 17 0.00036 34.9 8.5 72 47-125 25-100 (370)
98 TIGR02482 PFKA_ATP 6-phosphofr 74.1 7.1 0.00015 36.4 5.6 58 93-163 79-139 (301)
99 PRK03202 6-phosphofructokinase 74.1 6.5 0.00014 37.0 5.3 52 92-157 80-131 (320)
100 PRK06203 aroB 3-dehydroquinate 74.0 29 0.00062 33.7 9.9 92 46-150 42-145 (389)
101 PRK15138 aldehyde reductase; P 73.6 14 0.0003 35.8 7.7 105 47-159 30-149 (387)
102 cd00363 PFK Phosphofructokinas 72.5 8.1 0.00017 36.7 5.6 57 93-157 80-136 (338)
103 COG1646 Predicted phosphate-bi 70.8 15 0.00033 32.6 6.5 65 82-154 18-82 (240)
104 COG0205 PfkA 6-phosphofructoki 70.3 7.1 0.00015 37.1 4.7 49 96-157 85-133 (347)
105 PRK14072 6-phosphofructokinase 69.8 11 0.00024 36.9 6.0 64 92-163 90-156 (416)
106 PRK06555 pyrophosphate--fructo 68.7 10 0.00022 36.8 5.4 57 93-157 100-156 (403)
107 TIGR01162 purE phosphoribosyla 67.4 46 0.001 27.8 8.3 74 63-152 11-86 (156)
108 PRK14021 bifunctional shikimat 67.0 38 0.00082 34.4 9.5 35 105-150 269-303 (542)
109 cd08198 DHQS-like2 Dehydroquin 66.9 52 0.0011 31.7 9.9 93 46-151 30-134 (369)
110 cd08183 Fe-ADH2 Iron-containin 66.5 15 0.00032 35.4 6.2 103 47-159 23-140 (374)
111 PRK14071 6-phosphofructokinase 65.7 14 0.00031 35.4 5.8 57 94-163 96-155 (360)
112 PF00365 PFK: Phosphofructokin 63.6 5.5 0.00012 36.8 2.5 51 95-158 82-132 (282)
113 PLN02884 6-phosphofructokinase 63.1 16 0.00035 35.7 5.6 62 94-163 132-196 (411)
114 TIGR00725 conserved hypothetic 62.8 17 0.00036 30.5 5.1 33 104-150 90-123 (159)
115 cd07025 Peptidase_S66 LD-Carbo 62.4 25 0.00054 32.4 6.6 64 52-119 3-77 (282)
116 cd01536 PBP1_ABC_sugar_binding 60.7 1E+02 0.0022 27.0 10.3 47 80-126 29-77 (267)
117 cd00764 Eukaryotic_PFK Phospho 60.0 18 0.00039 38.2 5.7 63 94-157 86-158 (762)
118 cd06167 LabA_like LabA_like pr 59.3 36 0.00078 27.6 6.5 34 96-129 90-123 (149)
119 PLN03028 pyrophosphate--fructo 59.2 21 0.00045 36.7 5.9 62 94-163 162-228 (610)
120 cd06312 PBP1_ABC_sugar_binding 58.5 1.2E+02 0.0027 26.8 10.6 61 66-126 15-79 (271)
121 COG0371 GldA Glycerol dehydrog 57.6 62 0.0014 31.0 8.4 92 47-159 31-125 (360)
122 cd00764 Eukaryotic_PFK Phospho 57.6 25 0.00055 37.1 6.3 90 92-188 465-563 (762)
123 cd06310 PBP1_ABC_sugar_binding 56.4 1.2E+02 0.0025 26.9 10.0 74 48-126 1-79 (273)
124 cd06295 PBP1_CelR Ligand bindi 56.1 1.1E+02 0.0024 27.2 9.8 77 46-125 3-83 (275)
125 PLN02948 phosphoribosylaminoim 55.5 2.5E+02 0.0054 28.9 13.0 112 46-187 410-523 (577)
126 cd06341 PBP1_ABC_ligand_bindin 55.4 1E+02 0.0022 28.6 9.8 79 46-128 132-211 (341)
127 PRK10653 D-ribose transporter 54.8 1.5E+02 0.0033 26.8 10.7 76 45-125 25-103 (295)
128 cd06318 PBP1_ABC_sugar_binding 53.2 1.5E+02 0.0033 26.3 10.3 32 95-126 45-77 (282)
129 cd06300 PBP1_ABC_sugar_binding 53.2 1.6E+02 0.0034 26.1 10.3 35 92-126 47-82 (272)
130 TIGR02638 lactal_redase lactal 53.1 47 0.001 32.0 7.1 108 46-160 29-150 (379)
131 smart00115 CASc Caspase, inter 53.0 1.1E+02 0.0024 27.3 9.1 65 43-110 4-77 (241)
132 TIGR02478 6PF1K_euk 6-phosphof 52.9 27 0.00059 36.9 5.7 68 95-163 84-164 (745)
133 TIGR02477 PFKA_PPi diphosphate 52.5 30 0.00066 35.1 5.7 57 94-158 150-206 (539)
134 PRK07085 diphosphate--fructose 52.1 34 0.00074 34.8 6.0 63 93-163 152-219 (555)
135 PF11711 Tim54: Inner membrane 51.8 58 0.0013 31.5 7.2 68 27-97 46-118 (382)
136 cd06305 PBP1_methylthioribose_ 51.6 1.7E+02 0.0037 25.8 10.3 47 80-126 29-77 (273)
137 TIGR03590 PseG pseudaminic aci 51.4 1.1E+02 0.0025 27.9 9.1 19 104-123 240-258 (279)
138 cd01538 PBP1_ABC_xylose_bindin 51.1 1.7E+02 0.0036 26.4 10.2 63 64-126 12-77 (288)
139 cd00765 Pyrophosphate_PFK Phos 51.1 34 0.00073 34.8 5.8 58 93-158 154-211 (550)
140 cd01537 PBP1_Repressors_Sugar_ 50.8 1.7E+02 0.0036 25.4 10.3 61 80-153 29-90 (264)
141 PRK05948 precorrin-2 methyltra 50.6 1.5E+02 0.0032 26.6 9.4 57 101-164 88-145 (238)
142 cd01391 Periplasmic_Binding_Pr 49.8 1.6E+02 0.0034 25.2 9.6 46 80-125 32-78 (269)
143 PRK06756 flavodoxin; Provision 49.7 1.4E+02 0.003 24.2 8.5 69 46-125 1-72 (148)
144 PF08308 PEGA: PEGA domain; I 49.6 23 0.00051 24.8 3.3 34 320-355 3-37 (71)
145 TIGR02478 6PF1K_euk 6-phosphof 49.3 30 0.00066 36.6 5.3 65 92-163 465-532 (745)
146 PRK15454 ethanol dehydrogenase 48.9 58 0.0013 31.6 7.0 110 46-162 49-170 (395)
147 cd07062 Peptidase_S66_mccF_lik 47.6 57 0.0012 30.5 6.5 67 50-119 3-81 (308)
148 cd06333 PBP1_ABC-type_HAAT_lik 47.4 2.2E+02 0.0048 25.9 10.7 77 45-127 132-210 (312)
149 COG2185 Sbm Methylmalonyl-CoA 47.1 1.6E+02 0.0035 24.2 9.7 85 85-175 43-135 (143)
150 cd00886 MogA_MoaB MogA_MoaB fa 46.5 1E+02 0.0022 25.4 7.2 31 86-116 41-72 (152)
151 COG1454 EutG Alcohol dehydroge 46.3 98 0.0021 29.9 7.9 112 45-163 28-151 (377)
152 COG1570 XseA Exonuclease VII, 46.1 1.2E+02 0.0027 29.7 8.6 73 42-121 131-209 (440)
153 cd08188 Fe-ADH4 Iron-containin 45.9 52 0.0011 31.7 6.1 106 46-158 28-145 (377)
154 TIGR00725 conserved hypothetic 44.3 49 0.0011 27.6 5.0 47 93-152 19-65 (159)
155 TIGR02667 moaB_proteo molybden 44.1 1.3E+02 0.0028 25.2 7.5 31 86-116 43-74 (163)
156 cd06282 PBP1_GntR_like_2 Ligan 44.0 2.2E+02 0.0048 24.9 10.4 46 80-125 29-75 (266)
157 PRK10936 TMAO reductase system 43.9 1.5E+02 0.0032 27.9 8.8 75 38-117 38-116 (343)
158 PTZ00287 6-phosphofructokinase 43.8 50 0.0011 37.2 6.0 63 93-163 916-983 (1419)
159 PRK00536 speE spermidine synth 43.2 15 0.00032 33.6 1.7 18 106-123 74-92 (262)
160 cd08196 DHQS-like1 Dehydroquin 43.0 1.8E+02 0.0038 27.8 9.1 84 47-150 20-110 (346)
161 cd01540 PBP1_arabinose_binding 42.6 2.5E+02 0.0054 25.1 10.0 47 80-126 29-76 (289)
162 PTZ00468 phosphofructokinase f 42.3 49 0.0011 36.9 5.7 62 94-163 185-251 (1328)
163 cd00032 CASc Caspase, interleu 42.2 2E+02 0.0043 25.7 9.0 72 43-117 5-86 (243)
164 cd06301 PBP1_rhizopine_binding 42.1 2.4E+02 0.0053 24.8 10.2 62 65-126 13-78 (272)
165 PRK08284 precorrin 6A synthase 42.0 87 0.0019 28.4 6.5 60 98-163 96-156 (253)
166 cd06321 PBP1_ABC_sugar_binding 41.5 2.5E+02 0.0054 24.8 10.2 31 96-126 48-79 (271)
167 cd01539 PBP1_GGBP Periplasmic 41.5 2.3E+02 0.0051 25.8 9.7 31 96-126 48-79 (303)
168 PF05893 LuxC: Acyl-CoA reduct 40.9 40 0.00086 32.9 4.4 44 104-152 167-210 (399)
169 PF02601 Exonuc_VII_L: Exonucl 40.0 2E+02 0.0043 26.8 9.0 71 43-120 11-90 (319)
170 PRK12446 undecaprenyldiphospho 40.0 2.7E+02 0.006 26.4 10.0 30 104-150 251-280 (352)
171 PF07015 VirC1: VirC1 protein; 39.6 1.9E+02 0.0042 25.8 8.2 98 47-159 1-101 (231)
172 cd06335 PBP1_ABC_ligand_bindin 38.9 3.3E+02 0.0071 25.4 10.7 77 46-128 138-216 (347)
173 TIGR02434 CobF precorrin-6A sy 38.0 1.1E+02 0.0024 27.7 6.5 59 96-164 93-156 (249)
174 PF01936 NYN: NYN domain; Int 37.3 67 0.0014 25.6 4.7 26 104-129 94-119 (146)
175 TIGR00730 conserved hypothetic 37.3 52 0.0011 28.1 4.1 23 104-126 95-118 (178)
176 PRK15473 cbiF cobalt-precorrin 37.1 1.3E+02 0.0029 27.1 7.1 63 93-164 68-131 (257)
177 PRK03743 pdxA 4-hydroxythreoni 36.9 56 0.0012 31.0 4.6 62 46-112 203-266 (332)
178 cd06268 PBP1_ABC_transporter_L 36.2 2.9E+02 0.0064 24.2 9.3 76 46-127 135-212 (298)
179 PF03641 Lysine_decarbox: Poss 35.9 34 0.00075 27.5 2.7 39 105-150 53-92 (133)
180 PRK10014 DNA-binding transcrip 35.6 3.6E+02 0.0077 24.9 11.0 76 45-125 63-140 (342)
181 cd00758 MoCF_BD MoCF_BD: molyb 35.2 97 0.0021 24.8 5.2 38 87-125 41-83 (133)
182 COG0707 MurG UDP-N-acetylgluco 34.9 3.3E+02 0.0071 26.1 9.6 84 47-153 183-283 (357)
183 cd06315 PBP1_ABC_sugar_binding 34.9 3.3E+02 0.0072 24.3 10.5 31 95-125 46-77 (280)
184 COG1691 NCAIR mutase (PurE)-re 34.8 56 0.0012 29.1 3.9 56 99-175 166-222 (254)
185 TIGR01768 GGGP-family geranylg 34.4 64 0.0014 28.7 4.3 55 94-158 16-70 (223)
186 PLN00180 NDF6 (NDH-dependent f 34.3 8.9 0.00019 31.5 -1.0 15 109-123 128-142 (180)
187 PLN02251 pyrophosphate-depende 34.0 1.1E+02 0.0023 31.4 6.3 59 93-159 178-236 (568)
188 PRK05637 anthranilate synthase 33.9 3.2E+02 0.007 23.8 9.4 60 46-121 1-60 (208)
189 COG0337 AroB 3-dehydroquinate 33.9 2.7E+02 0.0059 26.7 8.6 89 44-150 31-128 (360)
190 PRK15395 methyl-galactoside AB 33.8 3.9E+02 0.0085 24.8 10.8 80 42-126 20-103 (330)
191 cd02812 PcrB_like PcrB_like pr 33.7 1.3E+02 0.0028 26.7 6.1 52 93-155 13-67 (219)
192 PF04392 ABC_sub_bind: ABC tra 33.6 2.1E+02 0.0046 26.2 8.0 77 44-127 129-205 (294)
193 cd06278 PBP1_LacI_like_2 Ligan 33.3 3.3E+02 0.0071 23.7 12.2 45 80-125 29-73 (266)
194 cd06319 PBP1_ABC_sugar_binding 32.9 3.4E+02 0.0074 23.9 10.0 61 65-125 13-76 (277)
195 PRK03371 pdxA 4-hydroxythreoni 32.7 68 0.0015 30.3 4.4 63 45-112 201-265 (326)
196 PF12219 End_tail_spike: Catal 32.5 28 0.0006 28.1 1.5 14 106-119 85-98 (160)
197 PF12138 Spherulin4: Spherulat 32.1 93 0.002 28.2 5.1 33 42-74 26-63 (253)
198 PRK05568 flavodoxin; Provision 31.7 2.2E+02 0.0047 22.7 6.9 68 46-125 1-76 (142)
199 PRK00232 pdxA 4-hydroxythreoni 31.7 80 0.0017 29.9 4.7 63 45-112 202-266 (332)
200 cd06304 PBP1_BmpA_like Peripla 31.5 3.6E+02 0.0079 23.7 10.1 65 48-115 1-66 (260)
201 TIGR00288 conserved hypothetic 31.5 1.7E+02 0.0036 24.6 6.1 47 103-160 103-149 (160)
202 PRK12419 riboflavin synthase s 31.3 3.1E+02 0.0068 22.9 8.6 98 43-152 7-118 (158)
203 PRK11780 isoprenoid biosynthes 31.2 2.3E+02 0.0049 25.0 7.3 15 103-117 83-97 (217)
204 COG1979 Uncharacterized oxidor 31.2 2E+02 0.0044 27.3 7.0 62 46-114 29-94 (384)
205 cd06320 PBP1_allose_binding Pe 31.1 3.7E+02 0.008 23.7 9.4 74 48-126 1-79 (275)
206 cd06349 PBP1_ABC_ligand_bindin 29.8 4.5E+02 0.0097 24.2 10.6 77 46-128 135-213 (340)
207 cd06316 PBP1_ABC_sugar_binding 29.6 4.1E+02 0.009 23.8 10.0 31 96-126 47-78 (294)
208 COG2984 ABC-type uncharacteriz 29.5 81 0.0018 29.6 4.3 144 26-198 144-298 (322)
209 cd06360 PBP1_alkylbenzenes_lik 29.4 4.1E+02 0.0088 24.3 9.3 76 46-127 134-211 (336)
210 PRK11253 ldcA L,D-carboxypepti 29.3 1.6E+02 0.0034 27.5 6.3 67 50-120 4-82 (305)
211 PF04101 Glyco_tran_28_C: Glyc 29.2 51 0.0011 27.3 2.8 30 106-152 73-102 (167)
212 COG0859 RfaF ADP-heptose:LPS h 29.1 2.4E+02 0.0052 26.5 7.6 70 48-124 175-248 (334)
213 TIGR00237 xseA exodeoxyribonuc 28.8 3.1E+02 0.0067 27.0 8.5 74 41-121 124-203 (432)
214 cd03522 MoeA_like MoeA_like. T 28.5 2.7E+02 0.0058 26.2 7.6 31 86-116 200-230 (312)
215 PF01075 Glyco_transf_9: Glyco 28.5 2.1E+02 0.0045 25.2 6.8 74 46-126 103-182 (247)
216 cd02067 B12-binding B12 bindin 28.4 1.4E+02 0.003 23.1 5.1 34 93-126 38-71 (119)
217 PRK11303 DNA-binding transcrip 28.4 4.6E+02 0.01 23.9 10.6 75 46-125 61-137 (328)
218 PTZ00468 phosphofructokinase f 28.2 94 0.002 34.9 5.1 56 100-158 795-850 (1328)
219 COG1819 Glycosyl transferases, 28.1 72 0.0016 31.1 4.0 33 102-151 297-329 (406)
220 TIGR00557 pdxA 4-hydroxythreon 27.9 86 0.0019 29.6 4.2 62 46-112 196-259 (320)
221 PRK00286 xseA exodeoxyribonucl 27.8 3.2E+02 0.007 26.8 8.5 73 42-121 131-208 (438)
222 PRK01909 pdxA 4-hydroxythreoni 27.6 98 0.0021 29.3 4.5 63 45-112 198-262 (329)
223 PRK06703 flavodoxin; Provision 27.4 3.3E+02 0.0072 22.0 9.6 63 46-120 1-66 (151)
224 cd06338 PBP1_ABC_ligand_bindin 27.4 4.9E+02 0.011 23.9 10.8 76 46-127 141-218 (345)
225 PF13458 Peripla_BP_6: Peripla 27.4 4.8E+02 0.01 23.9 9.4 78 45-128 134-213 (343)
226 PF01884 PcrB: PcrB family; I 27.3 1.3E+02 0.0029 26.8 5.1 48 96-155 23-72 (230)
227 PTZ00287 6-phosphofructokinase 27.2 1E+02 0.0022 34.9 5.1 63 93-163 259-326 (1419)
228 TIGR00730 conserved hypothetic 27.1 1.1E+02 0.0024 26.1 4.5 46 92-151 19-66 (178)
229 PF02310 B12-binding: B12 bind 27.0 96 0.0021 23.9 3.9 19 95-113 41-59 (121)
230 cd06306 PBP1_TorT-like TorT-li 26.7 4.5E+02 0.0097 23.2 9.8 61 65-125 13-77 (268)
231 PRK13805 bifunctional acetalde 26.6 2E+02 0.0044 31.1 7.4 75 46-125 480-558 (862)
232 COG1049 AcnB Aconitase B [Ener 26.5 46 0.00099 33.9 2.2 51 109-161 461-513 (852)
233 TIGR02955 TMAO_TorT TMAO reduc 26.4 4.8E+02 0.01 23.5 9.8 32 93-124 45-77 (295)
234 COG1611 Predicted Rossmann fol 26.3 1.2E+02 0.0026 26.5 4.7 46 94-152 36-81 (205)
235 KOG2440 Pyrophosphate-dependen 26.0 1.2E+02 0.0026 31.5 5.1 47 80-127 203-260 (666)
236 TIGR00640 acid_CoA_mut_C methy 26.0 3.5E+02 0.0075 21.7 8.7 71 49-127 4-75 (132)
237 cd06313 PBP1_ABC_sugar_binding 25.8 3.7E+02 0.0081 23.8 8.1 47 80-126 29-77 (272)
238 PRK05312 pdxA 4-hydroxythreoni 25.4 1.1E+02 0.0025 28.9 4.6 62 46-112 208-271 (336)
239 smart00852 MoCF_biosynth Proba 25.3 3.2E+02 0.007 21.6 6.8 38 87-125 40-82 (135)
240 TIGR01465 cobM_cbiF precorrin- 25.3 1.9E+02 0.0042 25.3 5.9 62 93-163 59-121 (229)
241 cd04509 PBP1_ABC_transporter_G 25.2 4.7E+02 0.01 22.9 8.7 77 46-128 136-214 (299)
242 TIGR01769 GGGP geranylgeranylg 25.1 1.4E+02 0.003 26.2 4.7 53 92-152 11-63 (205)
243 cd06348 PBP1_ABC_ligand_bindin 25.1 5.5E+02 0.012 23.7 9.7 79 45-128 135-215 (344)
244 cd06299 PBP1_LacI_like_13 Liga 24.9 4.6E+02 0.01 22.8 10.5 46 80-126 29-75 (265)
245 cd08184 Fe-ADH3 Iron-containin 24.8 2.1E+02 0.0045 27.3 6.3 66 94-160 67-143 (347)
246 PRK05990 precorrin-2 C(20)-met 24.8 2.1E+02 0.0047 25.5 6.1 56 98-163 91-147 (241)
247 TIGR02634 xylF D-xylose ABC tr 24.8 5.3E+02 0.012 23.4 10.0 63 64-126 11-76 (302)
248 cd06281 PBP1_LacI_like_5 Ligan 24.7 4.8E+02 0.01 22.9 10.7 46 80-125 29-75 (269)
249 PRK05569 flavodoxin; Provision 24.4 3.4E+02 0.0073 21.5 6.8 68 46-125 1-76 (141)
250 PRK04155 chaperone protein Hch 24.0 5.8E+02 0.013 23.6 11.2 17 103-119 145-161 (287)
251 PRK03604 moaC bifunctional mol 24.0 3E+02 0.0066 25.8 7.1 31 86-116 196-226 (312)
252 cd01617 DCX Ubiquitin-like dom 23.9 2.8E+02 0.0062 20.0 5.6 63 46-115 13-76 (80)
253 PF02016 Peptidase_S66: LD-car 23.7 75 0.0016 29.3 3.0 63 52-119 3-77 (284)
254 cd06334 PBP1_ABC_ligand_bindin 23.6 6.2E+02 0.013 23.7 11.1 77 46-128 140-218 (351)
255 cd06267 PBP1_LacI_sugar_bindin 23.6 4.7E+02 0.01 22.4 10.0 44 81-125 30-74 (264)
256 PLN02335 anthranilate synthase 23.3 2.5E+02 0.0054 24.8 6.2 65 42-121 14-78 (222)
257 PRK07168 bifunctional uroporph 23.1 2.4E+02 0.0051 28.3 6.5 52 100-164 75-131 (474)
258 PF10580 Neuromodulin_N: Gap j 22.8 39 0.00084 19.7 0.6 6 1-6 1-6 (32)
259 PRK10355 xylF D-xylose transpo 22.8 6.2E+02 0.013 23.5 11.3 77 45-126 24-103 (330)
260 PRK04169 geranylgeranylglycery 22.7 2.3E+02 0.0049 25.4 5.7 45 99-152 26-70 (232)
261 PF13407 Peripla_BP_4: Peripla 22.6 5.1E+02 0.011 22.5 9.1 45 94-151 44-89 (257)
262 TIGR02329 propionate_PrpR prop 22.5 4.1E+02 0.0089 27.0 8.2 66 46-125 97-162 (526)
263 cd06323 PBP1_ribose_binding Pe 22.3 5.2E+02 0.011 22.4 9.5 46 80-125 29-76 (268)
264 COG1995 PdxA Pyridoxal phospha 22.3 1.1E+02 0.0024 28.8 3.7 64 47-115 203-268 (332)
265 cd06322 PBP1_ABC_sugar_binding 22.1 5.3E+02 0.012 22.5 9.3 61 65-125 13-76 (267)
266 TIGR02417 fruct_sucro_rep D-fr 22.0 6.1E+02 0.013 23.1 11.2 76 45-125 59-136 (327)
267 TIGR00177 molyb_syn molybdenum 22.0 2.3E+02 0.005 23.0 5.3 30 87-117 49-78 (144)
268 PF00885 DMRL_synthase: 6,7-di 21.9 4.2E+02 0.009 21.7 6.8 46 82-127 38-93 (144)
269 PF06506 PrpR_N: Propionate ca 21.9 1.8E+02 0.004 24.4 4.9 65 46-124 77-141 (176)
270 PRK03670 competence damage-ind 21.7 3.7E+02 0.008 24.3 7.0 29 87-115 42-70 (252)
271 cd06268 PBP1_ABC_transporter_L 21.6 4.3E+02 0.0094 23.1 7.7 44 82-125 42-86 (298)
272 PF02608 Bmp: Basic membrane p 21.6 4.3E+02 0.0093 24.4 7.7 57 80-149 34-92 (306)
273 PF06832 BiPBP_C: Penicillin-B 21.5 1.2E+02 0.0026 22.3 3.2 26 318-343 31-56 (89)
274 PF03575 Peptidase_S51: Peptid 21.4 2.6E+02 0.0056 22.9 5.6 43 68-116 4-46 (154)
275 PRK10423 transcriptional repre 21.3 6.2E+02 0.013 23.0 9.1 69 45-117 55-124 (327)
276 PF00532 Peripla_BP_1: Peripla 21.3 6.1E+02 0.013 22.9 10.1 74 47-126 2-76 (279)
277 cd06311 PBP1_ABC_sugar_binding 20.9 5.8E+02 0.013 22.4 9.1 43 96-151 51-94 (274)
278 cd06337 PBP1_ABC_ligand_bindin 20.7 5.1E+02 0.011 24.2 8.2 37 91-127 189-225 (357)
279 cd06296 PBP1_CatR_like Ligand- 20.5 5.7E+02 0.012 22.2 10.7 45 80-125 29-74 (270)
280 cd06345 PBP1_ABC_ligand_bindin 20.5 6.8E+02 0.015 23.1 10.5 78 44-127 142-221 (344)
281 PRK15424 propionate catabolism 20.4 2.6E+02 0.0057 28.5 6.3 66 46-125 107-172 (538)
282 PRK09273 hypothetical protein; 20.3 3.4E+02 0.0074 23.9 6.1 25 52-76 5-29 (211)
283 cd06302 PBP1_LsrB_Quorum_Sensi 20.3 6.4E+02 0.014 22.7 10.6 34 93-126 44-78 (298)
284 PF04166 PdxA: Pyridoxal phosp 20.3 76 0.0016 29.6 2.3 62 46-112 177-240 (298)
285 cd06366 PBP1_GABAb_receptor Li 20.2 6.2E+02 0.013 23.4 8.7 78 45-128 134-215 (350)
286 cd06273 PBP1_GntR_like_1 This 20.2 5.8E+02 0.013 22.2 10.7 45 80-125 29-74 (268)
287 cd06324 PBP1_ABC_sugar_binding 20.2 6.5E+02 0.014 22.8 10.4 61 66-126 15-79 (305)
288 PRK06455 riboflavin synthase; 20.1 5.2E+02 0.011 21.6 7.5 63 46-113 1-64 (155)
No 1
>PRK11914 diacylglycerol kinase; Reviewed
Probab=100.00 E-value=2.8e-60 Score=444.31 Aligned_cols=295 Identities=26% Similarity=0.476 Sum_probs=265.6
Q ss_pred CCCCCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEecCCchHHHHHHHHHHHcCCCEEEEEeCCchHHHHH
Q 018199 43 SSRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVV 122 (359)
Q Consensus 43 ~~~~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTv~evl 122 (359)
...++++++|+||+||++++.+.|+++.+.|++. ++++.++.|+.++|+.++++++..+++|.||++|||||+|||+
T Consensus 5 ~~~~~~~~iI~NP~sG~g~~~~~~~~~~~~l~~~---g~~~~~~~t~~~~~~~~~a~~~~~~~~d~vvv~GGDGTi~evv 81 (306)
T PRK11914 5 RHEIGKVTVLTNPLSGHGAAPHAAERAIARLHHR---GVDVVEIVGTDAHDARHLVAAALAKGTDALVVVGGDGVISNAL 81 (306)
T ss_pred cCCCceEEEEECCCCCCCcHHHHHHHHHHHHHHc---CCeEEEEEeCCHHHHHHHHHHHHhcCCCEEEEECCchHHHHHh
Confidence 3457999999999999999888899988888764 4567778899999999999998888899999999999999999
Q ss_pred hHhHhCCccccccccccCCcceEEEeeCcChhhhhhhcCCCC-CHHHHHHHHHcCCeeeEeEEEEEccCCCceEEEEEec
Q 018199 123 NGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRN-DPYEAVERIAKGVRSWVDVGVINGETGEPHYFINVAD 201 (359)
Q Consensus 123 ngl~~~~~~~~~~~~~~~~~~~lgiiP~GTgN~~Ar~lg~~~-~~~~al~~i~~g~~~~iD~~~v~~~~~~~~~f~~~~~ 201 (359)
|+|+. .++|||+||+||+|||||+||+|. +++++++.+.+|+++++|++++++.++..+||+|+++
T Consensus 82 ~~l~~-------------~~~~lgiiP~GT~NdfAr~lg~~~~~~~~a~~~i~~g~~~~iDlg~v~~~~~~~~~f~n~~~ 148 (306)
T PRK11914 82 QVLAG-------------TDIPLGIIPAGTGNDHAREFGIPTGDPEAAADVIVDGWTETVDLGRIQDDDGIVKWFGTVAA 148 (306)
T ss_pred HHhcc-------------CCCcEEEEeCCCcchhHHHcCCCCCCHHHHHHHHHcCCceEEEEEEEecCCCCcEEEEEEEe
Confidence 99962 468999999999999999999996 7999999999999999999999975544589999999
Q ss_pred cccchhhcccccccc-cccChhhHHHHHHHHhcCCCCcEEEEEcC-eeEEEecceEEEEEeCcccccCCceeCCCCCCCC
Q 018199 202 LHLSAKAGYYASRYK-RFGNLCYVIGALQAFMGHRNQDLRVKVNE-GEWEEYSQVTALCIGNAKYFGGGMKITPNADPRN 279 (359)
Q Consensus 202 ~G~~a~~~~~~~~~~-~~G~~~Y~~~~l~~l~~~~~~~~~i~~d~-~~~~~~~~~~~~~v~N~~~~ggg~~i~P~a~~~D 279 (359)
+|+++.+....++.| ++|+++|++++++.+++++++++++++|+ +.+. .++.++.|+|+++|||++.++|+|+++|
T Consensus 149 ~G~~a~v~~~~~~~k~~~G~~aY~~~~l~~l~~~~~~~~~i~~dg~~~~~--~~~~~~~v~N~~~~GG~~~~~p~a~~~D 226 (306)
T PRK11914 149 TGFDSLVTDRANRMRWPHGRMRYNLAMLAELSKLRPLPFRLVLDGTEEIV--TDLTLAAFGNTRSYGGGMLICPNADHTD 226 (306)
T ss_pred eehHHHHHHHHHhccccCCchhhHHHHHHHHHhcCCCcEEEEEeCCeEEE--eeEEEEEEeCcccccCCceeCCCCcCCC
Confidence 999999876665444 47999999999999999999999999998 5544 3788899999999999999999999999
Q ss_pred CeeEEEEEecCCHHHHHHHHHhhhCCeeeeeCCEEEEEEeEEEEEeccCCCCceEEecCCCCCccceEEEEeCCeeEEeC
Q 018199 280 GYFEVVILQDFKWYDFILKLLKLYNGTHLSVKNVTSRRAHSIEVEDISSGDSIYVQSDGEHLGFLPRKLCVLPAAIEMIC 359 (359)
Q Consensus 280 G~ldv~~v~~~~~~~ll~~l~~~~~G~~~~~~~v~~~~~~~i~i~~~~~~~~~~~~iDGE~~~~~p~~i~v~p~~l~vl~ 359 (359)
|.|||+++++.++++++++++++++|+|.+.+.|+++++++++|+. + ++++++|||.++..|++|+++|++++|++
T Consensus 227 G~ldv~~v~~~~~~~~l~~~~~~~~g~~~~~~~v~~~~~~~i~i~~---~-~~~~~~DGE~~~~~p~~i~v~p~al~v~v 302 (306)
T PRK11914 227 GLLDITMVQSASRTRLLRLFPTVFKGTHVELDEVSTARAKTVHVEC---P-GINAYADGDFACPLPAEISAVPGALQILR 302 (306)
T ss_pred CcEEEEEEecCCHHHHHHHHHHhcCCcccCCCcEEEEEeEEEEEEc---C-CcceecCCCcCCCCceEEEEEcCeEEEEC
Confidence 9999999999999999999999999999999999999999999985 2 46899999999988999999999999985
No 2
>PRK13059 putative lipid kinase; Reviewed
Probab=100.00 E-value=1.5e-59 Score=436.45 Aligned_cols=288 Identities=24% Similarity=0.387 Sum_probs=256.4
Q ss_pred CCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEecCCchHHHHHHHHHHHcCCCEEEEEeCCchHHHHHhHh
Q 018199 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGF 125 (359)
Q Consensus 46 ~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTv~evlngl 125 (359)
|+++++|+||.||++++.+.|+++.+.|.+. ++++.++.|+..++ .+.++++..+++|.||++|||||+|||+|+|
T Consensus 1 ~~~~~~I~NP~aG~g~~~~~~~~i~~~l~~~---g~~~~~~~~~~~~~-~~~~~~~~~~~~d~vi~~GGDGTv~evv~gl 76 (295)
T PRK13059 1 MKKVKFIYNPYSGENAIISELDKVIRIHQEK---GYLVVPYRISLEYD-LKNAFKDIDESYKYILIAGGDGTVDNVVNAM 76 (295)
T ss_pred CcEEEEEECCcccchhHHHHHHHHHHHHHHC---CcEEEEEEccCcch-HHHHHHHhhcCCCEEEEECCccHHHHHHHHH
Confidence 4789999999999998878888888888764 34555556665554 3566777777899999999999999999999
Q ss_pred HhCCccccccccccCCcceEEEeeCcChhhhhhhcCCCCCHHHHHHHHHcCCeeeEeEEEEEccCCCceEEEEEeccccc
Q 018199 126 FSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRNDPYEAVERIAKGVRSWVDVGVINGETGEPHYFINVADLHLS 205 (359)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~lgiiP~GTgN~~Ar~lg~~~~~~~al~~i~~g~~~~iD~~~v~~~~~~~~~f~~~~~~G~~ 205 (359)
++. ..++|||+||+||+|||||+||+|.++.+|++.+..|+.+++|++++++ +||+|++++|++
T Consensus 77 ~~~-----------~~~~~lgviP~GTgNdfAr~lgi~~~~~~a~~~i~~g~~~~vDlg~v~~-----~~f~n~~~~G~~ 140 (295)
T PRK13059 77 KKL-----------NIDLPIGILPVGTANDFAKFLGMPTDIGEACEQILKSKPKKVDLGKIND-----KYFINVASTGLF 140 (295)
T ss_pred Hhc-----------CCCCcEEEECCCCHhHHHHHhCCCCCHHHHHHHHHhCCcEEeeEEEECC-----EEEEEEEeeeec
Confidence 853 2468999999999999999999999999999999999999999999997 899999999999
Q ss_pred hhhcccc--cccccccChhhHHHHHHHHhcCCCCcEEEEEcCeeEEEecceEEEEEeCcccccCCceeCCCCCCCCCeeE
Q 018199 206 AKAGYYA--SRYKRFGNLCYVIGALQAFMGHRNQDLRVKVNEGEWEEYSQVTALCIGNAKYFGGGMKITPNADPRNGYFE 283 (359)
Q Consensus 206 a~~~~~~--~~~~~~G~~~Y~~~~l~~l~~~~~~~~~i~~d~~~~~~~~~~~~~~v~N~~~~ggg~~i~P~a~~~DG~ld 283 (359)
+.+.... +.++++|+++|++++++.+++++++++++++|++.++. ++.+++|+|++|+|| +.++|+|+++||+||
T Consensus 141 a~v~~~~~~~~k~~~G~~aY~~~~~~~l~~~~~~~~~i~~d~~~~~~--~~~~~~v~N~~~~Gg-~~~~p~a~~~DG~Ld 217 (295)
T PRK13059 141 TDVSQKTDVNLKNTIGKLAYYLKGLEELPNFRKLKVKVTSEEVNFDG--DMYLMLVFNGQTAGN-FNLAYKAEVDDGLLD 217 (295)
T ss_pred hhhhhhccHHHhhCcchHHHHHHHHHHHhcCCCeeEEEEECCEEEEe--eEEEEEEEcCccccC-cccCCcccCCCCeEE
Confidence 9988765 35567899999999999999999999999999987754 678889999999885 689999999999999
Q ss_pred EEEEecCCHHHHHHHHHhhhCCeeeeeCC-EEEEEEeEEEEEeccCCCCceEEecCCCCCccceEEEEeCCeeEEeC
Q 018199 284 VVILQDFKWYDFILKLLKLYNGTHLSVKN-VTSRRAHSIEVEDISSGDSIYVQSDGEHLGFLPRKLCVLPAAIEMIC 359 (359)
Q Consensus 284 v~~v~~~~~~~ll~~l~~~~~G~~~~~~~-v~~~~~~~i~i~~~~~~~~~~~~iDGE~~~~~p~~i~v~p~~l~vl~ 359 (359)
|+++++.+++++++.++++++|+|.+.+. ++++++++++|+. ++++++++|||+.+..|+++++.|++++|++
T Consensus 218 v~i~~~~~~~~~l~~~~~~~~G~~~~~~~~v~~~~~~~i~i~~---~~~~~~~~DGE~~~~~p~~i~v~p~al~v~~ 291 (295)
T PRK13059 218 VIIIKACPIIDLIPLFIKVLKGEHLEDVNGLIYFKTDKLEIES---NEEIVTDIDGERGPDFPLNIECIKGGLKVLG 291 (295)
T ss_pred EEEEcCCCHHHHHHHHHHHHcCCccCCCccEEEEEeeEEEEEe---CCCceEEeCCCcCCCCcEEEEEecCeeEEEe
Confidence 99999999999999999999999999998 9999999999986 4678999999999999999999999999985
No 3
>PRK13337 putative lipid kinase; Reviewed
Probab=100.00 E-value=2.2e-59 Score=437.44 Aligned_cols=290 Identities=28% Similarity=0.425 Sum_probs=264.7
Q ss_pred CCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEecCCchHHHHHHHHHHHcCCCEEEEEeCCchHHHHHhHh
Q 018199 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGF 125 (359)
Q Consensus 46 ~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTv~evlngl 125 (359)
|+|+++|+||+||+++..+.|+++.+.|.+. ++++.++.|++++|+.++++++..+++|.||++|||||||+|+|+|
T Consensus 1 ~~r~~~I~Np~aG~~~~~~~~~~~~~~l~~~---~~~~~~~~t~~~~~a~~~a~~~~~~~~d~vvv~GGDGTl~~vv~gl 77 (304)
T PRK13337 1 MKRARIIYNPTSGRELFKKNLPDVLQKLEQA---GYETSAHATTGPGDATLAAERAVERKFDLVIAAGGDGTLNEVVNGI 77 (304)
T ss_pred CceEEEEECCcccchhHHHHHHHHHHHHHHc---CCEEEEEEecCCCCHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHH
Confidence 5789999999999988778888888888764 4567778899999999999998888899999999999999999999
Q ss_pred HhCCccccccccccCCcceEEEeeCcChhhhhhhcCCCCCHHHHHHHHHcCCeeeEeEEEEEccCCCceEEEEEeccccc
Q 018199 126 FSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRNDPYEAVERIAKGVRSWVDVGVINGETGEPHYFINVADLHLS 205 (359)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~lgiiP~GTgN~~Ar~lg~~~~~~~al~~i~~g~~~~iD~~~v~~~~~~~~~f~~~~~~G~~ 205 (359)
+.. ..++|||+||.||+|||||+||+|.++++|++.+.+|.++++|++++++ ++|+|++++|++
T Consensus 78 ~~~-----------~~~~~lgiiP~GT~NdfAr~lgi~~~~~~a~~~i~~g~~~~vDlg~vn~-----~~fln~~g~G~~ 141 (304)
T PRK13337 78 AEK-----------ENRPKLGIIPVGTTNDFARALHVPRDIEKAADVIIEGHTVPVDIGKANN-----RYFINIAGGGRL 141 (304)
T ss_pred hhC-----------CCCCcEEEECCcCHhHHHHHcCCCCCHHHHHHHHHcCCeEEEEEEEECC-----EEEEeeehhhHH
Confidence 753 2468999999999999999999999999999999999999999999998 999999999999
Q ss_pred hhhcccc--cccccccChhhHHHHHHHHhcCCCCcEEEEEcCeeEEEecceEEEEEeCcccccCCceeCCCCCCCCCeeE
Q 018199 206 AKAGYYA--SRYKRFGNLCYVIGALQAFMGHRNQDLRVKVNEGEWEEYSQVTALCIGNAKYFGGGMKITPNADPRNGYFE 283 (359)
Q Consensus 206 a~~~~~~--~~~~~~G~~~Y~~~~l~~l~~~~~~~~~i~~d~~~~~~~~~~~~~~v~N~~~~ggg~~i~P~a~~~DG~ld 283 (359)
+.+..+. +.++++|+++|++++++.+++++++++++++|++.+.. ++.+++|+|++++||++.++|+++++||.||
T Consensus 142 a~v~~~~~~~~k~~~G~~aY~~~~~~~l~~~~~~~~~i~~d~~~~~~--~~~~~~v~n~~~~gg~~~~~p~a~~~DG~ld 219 (304)
T PRK13337 142 TELTYEVPSKLKTMLGQLAYYLKGIEMLPSLKATDVRIEYDGKLFQG--EIMLFLLGLTNSVGGFEKLAPDASLDDGYFD 219 (304)
T ss_pred HHHHHhcCHHHhcCcccHHHHHHHHHHHhhCCCceEEEEECCeEEEe--EEEEEEEEcCcccCCccccCCcccCCCCeEE
Confidence 9987553 34567899999999999999999999999999887653 6788999999999999999999999999999
Q ss_pred EEEEecCCHHHHHHHHHhhhCCeeeeeCCEEEEEEeEEEEEeccCCCCceEEecCCCCCccceEEEEeCCeeEEeC
Q 018199 284 VVILQDFKWYDFILKLLKLYNGTHLSVKNVTSRRAHSIEVEDISSGDSIYVQSDGEHLGFLPRKLCVLPAAIEMIC 359 (359)
Q Consensus 284 v~~v~~~~~~~ll~~l~~~~~G~~~~~~~v~~~~~~~i~i~~~~~~~~~~~~iDGE~~~~~p~~i~v~p~~l~vl~ 359 (359)
++++++.+++++++++++++.|+|.+.+.++++++++++|+. +++..+++|||+.+..|++|+++|++++|++
T Consensus 220 v~iv~~~~~~~~l~~~~~~~~g~~~~~~~v~~~~~~~~~i~~---~~~~~~~iDGE~~~~~p~~i~v~p~al~v~~ 292 (304)
T PRK13337 220 LIIVKKANLAELIHIATLALRGEHIKHPKVIYTKANRIKVSS---FDKMQLNLDGEYGGKLPAEFENLYRHIEVFV 292 (304)
T ss_pred EEEEcCCCHHHHHHHHHHHHcCCcCCCCcEEEEEccEEEEEc---CCCCeEEeCCCcCCCCCEEEEEecceEEEEe
Confidence 999999999999999999999999999999999999999986 4678999999999999999999999999985
No 4
>PRK13055 putative lipid kinase; Reviewed
Probab=100.00 E-value=9.2e-59 Score=437.91 Aligned_cols=292 Identities=26% Similarity=0.417 Sum_probs=261.1
Q ss_pred CCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEecC-CchHHHHHHHHHHHcCCCEEEEEeCCchHHHHHhH
Q 018199 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTS-GPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNG 124 (359)
Q Consensus 46 ~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t~-~~~~a~~~~~~~~~~~~d~ivv~GGDGTv~evlng 124 (359)
+++++||+||+||++++.+.|.++.+.|.+. ++++.++.|+ .++|+.++++++..+++|.||++|||||+|||+|+
T Consensus 2 ~~r~~iI~NP~sG~~~~~~~~~~i~~~l~~~---g~~~~i~~t~~~~~~a~~~~~~~~~~~~d~vvv~GGDGTl~evvng 78 (334)
T PRK13055 2 QKRARLIYNPTSGQEIMKKNVADILDILEQA---GYETSAFQTTPEPNSAKNEAKRAAEAGFDLIIAAGGDGTINEVVNG 78 (334)
T ss_pred CceEEEEECCCCCchhHHHHHHHHHHHHHHc---CCeEEEEEeecCCccHHHHHHHHhhcCCCEEEEECCCCHHHHHHHH
Confidence 5799999999999999888898888888764 3456655555 56899999999888889999999999999999999
Q ss_pred hHhCCccccccccccCCcceEEEeeCcChhhhhhhcCCCC-CHHHHHHHHHcCCeeeEeEEEEE-ccCCCceEEEEEecc
Q 018199 125 FFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRN-DPYEAVERIAKGVRSWVDVGVIN-GETGEPHYFINVADL 202 (359)
Q Consensus 125 l~~~~~~~~~~~~~~~~~~~lgiiP~GTgN~~Ar~lg~~~-~~~~al~~i~~g~~~~iD~~~v~-~~~~~~~~f~~~~~~ 202 (359)
|+.. ..++|||+||+||+|||||+||+|. ++.++++.+.+++++++|+++++ + +||+|++++
T Consensus 79 l~~~-----------~~~~~LgiiP~GTgNdfAr~Lgi~~~~~~~a~~~l~~g~~~~vD~g~v~~~-----~~F~n~ag~ 142 (334)
T PRK13055 79 IAPL-----------EKRPKMAIIPAGTTNDYARALKIPRDNPVEAAKVILKNQTIKMDIGRANED-----KYFINIAAG 142 (334)
T ss_pred Hhhc-----------CCCCcEEEECCCchhHHHHHcCCCCcCHHHHHHHHHcCCcEEeeEEEECCC-----cEEEEEehh
Confidence 9743 2468999999999999999999999 89999999999999999999996 4 899999999
Q ss_pred ccchhhcccc--cccccccChhhHHHHHHHHhcCCCCcEEEEEcCeeEEEecceEEEEEeCcccccCCceeCCCCCCCCC
Q 018199 203 HLSAKAGYYA--SRYKRFGNLCYVIGALQAFMGHRNQDLRVKVNEGEWEEYSQVTALCIGNAKYFGGGMKITPNADPRNG 280 (359)
Q Consensus 203 G~~a~~~~~~--~~~~~~G~~~Y~~~~l~~l~~~~~~~~~i~~d~~~~~~~~~~~~~~v~N~~~~ggg~~i~P~a~~~DG 280 (359)
|+++.+.... ..++++|+++|++++++.+++++++++++++|++.+.. .+.+++++|++++||++.++|+|+++||
T Consensus 143 G~da~v~~~~~~~~k~~~G~laY~~~~~~~l~~~~~~~~~i~~d~~~~~~--~~~~~~v~n~~~~Gg~~~~~p~a~~~DG 220 (334)
T PRK13055 143 GSLTELTYSVPSQLKSMFGYLAYLAKGAELLPRVSPVPVRITYDEGVFEG--KISMFFLALTNSVGGFEQIVPDAKLDDG 220 (334)
T ss_pred ccchHHHHhcCHHHHhhccHHHHHHHHHHHHHhcCCeeEEEEECCEEEEE--EEEEEEEEcCcccCCccccCCCCcCCCc
Confidence 9999987543 34567899999999999999999999999999987654 6778889999999999999999999999
Q ss_pred eeEEEEEecCCHHHHHHHHHhhhC-CeeeeeCCEEEEEEeEEEEEeccCCCCceEEecCCCCCccceEEEEeCCeeEEeC
Q 018199 281 YFEVVILQDFKWYDFILKLLKLYN-GTHLSVKNVTSRRAHSIEVEDISSGDSIYVQSDGEHLGFLPRKLCVLPAAIEMIC 359 (359)
Q Consensus 281 ~ldv~~v~~~~~~~ll~~l~~~~~-G~~~~~~~v~~~~~~~i~i~~~~~~~~~~~~iDGE~~~~~p~~i~v~p~~l~vl~ 359 (359)
.||++++++.++++++++++.+++ |+|.+.+.|+++++++++|+.. .+++.++++|||+++..|++|++.|++|+|++
T Consensus 221 ~ldv~i~~~~~~~~~l~~~~~~~~~G~~~~~~~v~~~~~~~i~I~~~-~~~~~~~~iDGE~~~~~pv~i~v~p~al~v~~ 299 (334)
T PRK13055 221 KFTLIIVKTANLFELLHLMALILNGGKHIDDPRVIYIKTSKLTIEPL-GDDRLMVNLDGEYGGDAPMTFENLKQHIEFFA 299 (334)
T ss_pred eEEEEEEcCCCHHHHHHHHHHHHhCCCCCCCCcEEEEEccEEEEEeC-CCCcceEeeCCCcCCCCcEEEEEEcCeEEEEe
Confidence 999999999999999999999999 9999999999999999999863 13468999999999999999999999999985
No 5
>PRK13057 putative lipid kinase; Reviewed
Probab=100.00 E-value=4.4e-58 Score=425.53 Aligned_cols=281 Identities=29% Similarity=0.496 Sum_probs=255.1
Q ss_pred EEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEecCCchHHHHHHHHHHHcCCCEEEEEeCCchHHHHHhHhHhCC
Q 018199 50 VFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAG 129 (359)
Q Consensus 50 ~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTv~evlngl~~~~ 129 (359)
++|+||.||+++ +.|+++.+.|++. ++++....|++++|+.+++++ ..+++|.|+++|||||||||+|+++.
T Consensus 1 ~~I~Np~sg~~~--~~~~~i~~~l~~~---g~~~~~~~t~~~~~a~~~~~~-~~~~~d~iiv~GGDGTv~~v~~~l~~-- 72 (287)
T PRK13057 1 LLLVNRHARSGR--AALAAARAALEAA---GLELVEPPAEDPDDLSEVIEA-YADGVDLVIVGGGDGTLNAAAPALVE-- 72 (287)
T ss_pred CEEECCCCCCcc--hhHHHHHHHHHHc---CCeEEEEecCCHHHHHHHHHH-HHcCCCEEEEECchHHHHHHHHHHhc--
Confidence 479999998876 4678888888764 456777889999999999988 45779999999999999999999963
Q ss_pred ccccccccccCCcceEEEeeCcChhhhhhhcCCCCCHHHHHHHHHcCCeeeEeEEEEEccCCCceEEEEEeccccchhhc
Q 018199 130 KLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRNDPYEAVERIAKGVRSWVDVGVINGETGEPHYFINVADLHLSAKAG 209 (359)
Q Consensus 130 ~~~~~~~~~~~~~~~lgiiP~GTgN~~Ar~lg~~~~~~~al~~i~~g~~~~iD~~~v~~~~~~~~~f~~~~~~G~~a~~~ 209 (359)
.++|||+||+||+|||||+||++.+++++++.+..++++++|++++++ +||+|++++|++|.+.
T Consensus 73 -----------~~~~lgiiP~GT~Ndfar~Lg~~~~~~~a~~~i~~~~~~~vD~g~~~~-----~~f~n~~g~G~da~v~ 136 (287)
T PRK13057 73 -----------TGLPLGILPLGTANDLARTLGIPLDLEAAARVIATGQVRRIDLGWVNG-----HYFFNVASLGLSAELA 136 (287)
T ss_pred -----------CCCcEEEECCCCccHHHHHcCCCCCHHHHHHHHHcCCeEEeeEEEECC-----EEEEEEEecCccHHHH
Confidence 358999999999999999999999999999999999999999999987 9999999999999987
Q ss_pred ccc--cccccccChhhHHHHHHHHhcCCCCcEEEEEcCeeEEEecceEEEEEeCcccccCCceeCCCCCCCCCeeEEEEE
Q 018199 210 YYA--SRYKRFGNLCYVIGALQAFMGHRNQDLRVKVNEGEWEEYSQVTALCIGNAKYFGGGMKITPNADPRNGYFEVVIL 287 (359)
Q Consensus 210 ~~~--~~~~~~G~~~Y~~~~l~~l~~~~~~~~~i~~d~~~~~~~~~~~~~~v~N~~~~ggg~~i~P~a~~~DG~ldv~~v 287 (359)
... +.++++|+++|++++++.++++++++++++.|++.+.. ++.+++|+|++++||++.++|+|+++||.|||+++
T Consensus 137 ~~~~~~~k~~~G~~aY~~~~~~~l~~~~~~~~~l~~d~~~~~~--~~~~~~v~N~~~~gg~~~~~p~a~~~DG~ldv~~v 214 (287)
T PRK13057 137 RRLTKELKRRWGTLGYAIAALRVLRRSRPFTAEIEHDGRTERV--KTLQVAVGNGRYYGGGMTVAHDATIDDGRLDLYSL 214 (287)
T ss_pred HHhhHHhhccCChhHHHHHHHHHHhhCCCeEEEEEECCEEEEE--EEEEEEEecCcccCCCcccCCCCCCCCceEEEEEe
Confidence 643 45567899999999999999999999999999987653 67788999999999999999999999999999999
Q ss_pred ecCCHHHHHHHHHhhhCCeeeeeCCEEEEEEeEEEEEeccCCCCceEEecCCCCCccceEEEEeCCeeEEeC
Q 018199 288 QDFKWYDFILKLLKLYNGTHLSVKNVTSRRAHSIEVEDISSGDSIYVQSDGEHLGFLPRKLCVLPAAIEMIC 359 (359)
Q Consensus 288 ~~~~~~~ll~~l~~~~~G~~~~~~~v~~~~~~~i~i~~~~~~~~~~~~iDGE~~~~~p~~i~v~p~~l~vl~ 359 (359)
+..++++++..++.+++|+|.+.+.++++++++++|+. +++.++++|||.++..|++|++.|++++|++
T Consensus 215 ~~~~~~~~l~~~~~~~~g~~~~~~~v~~~~~~~~~i~~---~~~~~~~~DGE~~~~~p~~i~v~p~al~v~~ 283 (287)
T PRK13057 215 EVAHWWRLLALLPALRRGRHGEWPDVRAFRTTELELRT---RKPRPINTDGELTTYTPAHFRVLPKALRVLA 283 (287)
T ss_pred cCCCHHHHHHHHHHHhcCCccCCCcEEEEEeeEEEEEe---CCCcEEeeCCccCCCCCEEEEEECCeEEEEc
Confidence 99999999999999999999999999999999999986 5678999999999999999999999999985
No 6
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=100.00 E-value=3.2e-58 Score=450.31 Aligned_cols=334 Identities=23% Similarity=0.300 Sum_probs=275.3
Q ss_pred CCCCCCCcccccCC--cccccCCCCCCCCCCCCCCCCCcEEEEEcCCCCCCchhhhHH-HHHHHHHhccccccceEEEec
Q 018199 12 APPMAKPSVFRAEH--PMALDLSPNPISHGAASSSRRRDLVFVVNPRGASGRTGKEWK-KLLPYLRSRLSVDCNICESLT 88 (359)
Q Consensus 12 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~iiiNP~SG~g~~~~~~~-~~~~~l~~~~~~~~~~~~~~t 88 (359)
|--.+++.+|.... .-.+.|+..+. ......++++++||+||.||++++.+.|. ++.+.|++. ++++.++.|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~w~~~~~~--~~~~~~~~kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~~---gi~~~v~~T 151 (481)
T PLN02958 77 GALARKDFVFEPLSDESRRLWCQKLRD--YLDSLGRPKRLLVFVNPFGGKKSASKIFFDVVKPLLEDA---DIQLTIQET 151 (481)
T ss_pred CCceeeeEEEeCCCHHHHHHHHHHHHH--HHhhccCCcEEEEEEcCCCCCcchhHHHHHHHHHHHHHc---CCeEEEEec
Confidence 46778888886543 11222222200 00123678999999999999999888875 577888764 466778899
Q ss_pred CCchHHHHHHHHHHHcCCCEEEEEeCCchHHHHHhHhHhCCccccccccccCCcceEEEeeCcChhhhhhhc----CCCC
Q 018199 89 SGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTF----GWRN 164 (359)
Q Consensus 89 ~~~~~a~~~~~~~~~~~~d~ivv~GGDGTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~GTgN~~Ar~l----g~~~ 164 (359)
++++||.++++++...++|.||++|||||+|||+|||+.+. ++....++|||+||+||+|||||+| |+|.
T Consensus 152 ~~~ghA~~la~~~~~~~~D~VV~vGGDGTlnEVvNGL~~~~------~~~~~~~~pLGiIPaGTgNdfArsL~~~~gip~ 225 (481)
T PLN02958 152 KYQLHAKEVVRTMDLSKYDGIVCVSGDGILVEVVNGLLERE------DWKTAIKLPIGMVPAGTGNGMAKSLLDSVGEPC 225 (481)
T ss_pred cCccHHHHHHHHhhhcCCCEEEEEcCCCHHHHHHHHHhhCc------cccccccCceEEecCcCcchhhhhhccccCCCc
Confidence 99999999999987788999999999999999999998643 2223457999999999999999999 9999
Q ss_pred CHHHHHHHHHcCCeeeEeEEEEEccCCCceE-EEEEeccccchhhcccccccccccChhhHHHHHHHHhcCCCCcEEEEE
Q 018199 165 DPYEAVERIAKGVRSWVDVGVINGETGEPHY-FINVADLHLSAKAGYYASRYKRFGNLCYVIGALQAFMGHRNQDLRVKV 243 (359)
Q Consensus 165 ~~~~al~~i~~g~~~~iD~~~v~~~~~~~~~-f~~~~~~G~~a~~~~~~~~~~~~G~~~Y~~~~l~~l~~~~~~~~~i~~ 243 (359)
++.+|+..|+.|+.+++|+++++.. +.++ |+|++++|++|++...++++||+|.++|.+++++.++++++++++|++
T Consensus 226 ~~~~A~~~I~~g~~~~vDlg~v~~~--~~~~f~vn~~g~GfdAdV~~~se~kr~lG~lrY~~~~l~~l~~~r~y~~~I~~ 303 (481)
T PLN02958 226 SATNAVLAIIRGHKCSLDVATILQG--ETKFFSVLMLAWGLVADIDIESEKYRWMGSARLDFYGLQRILCLRQYNGRISF 303 (481)
T ss_pred CHHHHHHHHHcCCceEEeEEEEEcC--CceEEEEEeeeeehhhhhhcccccccccchHHHHHHHHHHHHhcCCcceEEEE
Confidence 9999999999999999999999742 1244 479999999999988888889999999999999999999999988874
Q ss_pred ---------------cCe-------------------------eEEEe-cceEEEEEeCcccccCCceeCCCCCCCCCee
Q 018199 244 ---------------NEG-------------------------EWEEY-SQVTALCIGNAKYFGGGMKITPNADPRNGYF 282 (359)
Q Consensus 244 ---------------d~~-------------------------~~~~~-~~~~~~~v~N~~~~ggg~~i~P~a~~~DG~l 282 (359)
+++ +|... ..+.+++|+|++++||++.++|+|+++||+|
T Consensus 304 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~fl~v~v~N~~~~Ggg~~iaP~A~l~DG~L 383 (481)
T PLN02958 304 VPAPGFEAYGEPTSYNGESTSKEESGKDKQHGYQGPDVKLENLDWRTIKGPFVSVWLHNVPWGGEDTLAAPDAKFSDGYL 383 (481)
T ss_pred EeccccccccccccccccccccccccccccccccCCccccCCccceEeecceeEEeeccCcccCCCcccCCcccCCCCeE
Confidence 111 12111 1234456999999999999999999999999
Q ss_pred EEEEEecCCHHHHHHHHHhhhCCeeeeeCCEEEEEEeEEEEEecc----CCCCceEEecCCCCCccceEEEEeCCeeEEe
Q 018199 283 EVVILQDFKWYDFILKLLKLYNGTHLSVKNVTSRRAHSIEVEDIS----SGDSIYVQSDGEHLGFLPRKLCVLPAAIEMI 358 (359)
Q Consensus 283 dv~~v~~~~~~~ll~~l~~~~~G~~~~~~~v~~~~~~~i~i~~~~----~~~~~~~~iDGE~~~~~p~~i~v~p~~l~vl 358 (359)
|++++++.+++++++.+++++.|+|.+.|.|+++++++++|++.. ..++..+++|||.++..|++|+++|++|+++
T Consensus 384 Dlviv~~~s~~~lL~~l~~~~~G~h~~~~~V~~~k~k~~~I~~~~~~~~~~~~~~i~iDGE~~~~~p~~i~v~~~al~~~ 463 (481)
T PLN02958 384 DLILIKDCPKLALLALMTKLSDGTHVKSPYVMYLKVKAFVLEPGPRTDDPTKGGIIDSDGEVLARGNGSYKCDQKALMSY 463 (481)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCccCCCceEEEEEEEEEEEECCcccCcCcCCeEEECCcccCCCCceeeecccccccc
Confidence 999999999999999999999999999999999999999999731 1145689999999999999999999999986
No 7
>PRK00861 putative lipid kinase; Reviewed
Probab=100.00 E-value=2.9e-57 Score=422.79 Aligned_cols=287 Identities=24% Similarity=0.360 Sum_probs=253.1
Q ss_pred CCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEecCCchHHHHHHHHHHHcCCCEEEEEeCCchHHHHHhHh
Q 018199 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGF 125 (359)
Q Consensus 46 ~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTv~evlngl 125 (359)
+++++||+||.||++++.+.|+++.+.|++. ++++++.|+.++|+.++++++..+++|.||++|||||+|||+|+|
T Consensus 2 ~~~~~iI~NP~sG~~~~~~~~~~i~~~l~~~----~~~~~~~t~~~~~a~~~a~~~~~~~~d~vv~~GGDGTl~evv~~l 77 (300)
T PRK00861 2 TRSACLIFNPVAGQGNPEVDLALIRAILEPE----MDLDIYLTTPEIGADQLAQEAIERGAELIIASGGDGTLSAVAGAL 77 (300)
T ss_pred CceEEEEECCCCCCCchhhhHHHHHHHHHhc----CceEEEEccCCCCHHHHHHHHHhcCCCEEEEECChHHHHHHHHHH
Confidence 5789999999999998877888888777642 467778899999999999998888999999999999999999999
Q ss_pred HhCCccccccccccCCcceEEEeeCcChhhhhhhcCCCCCHHHHHHHHHcCCeeeEeEEEEEccCCCceEEEEEeccccc
Q 018199 126 FSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRNDPYEAVERIAKGVRSWVDVGVINGETGEPHYFINVADLHLS 205 (359)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~lgiiP~GTgN~~Ar~lg~~~~~~~al~~i~~g~~~~iD~~~v~~~~~~~~~f~~~~~~G~~ 205 (359)
+. .++|||+||.||+|||||+||+|.++++|++.+.+|+++++|++++|+ +||+|++++|++
T Consensus 78 ~~-------------~~~~lgviP~GTgNdfAr~lgi~~~~~~a~~~i~~g~~~~iDlg~vn~-----~~fin~a~~G~~ 139 (300)
T PRK00861 78 IG-------------TDIPLGIIPRGTANAFAAALGIPDTIEEACRTILQGKTRRVDVAYCNG-----QPMILLAGIGFE 139 (300)
T ss_pred hc-------------CCCcEEEEcCCchhHHHHHcCCCCCHHHHHHHHHcCCcEEeeEEEECC-----EEEEEEEeccHH
Confidence 63 358999999999999999999999999999999999999999999987 899999999999
Q ss_pred hhhccccc--ccccccChhhHHHHHHHHhcCCCCcEEEEEcCeeEEEecceEEEEEeCcccccCCce-eCCCCCCCCCee
Q 018199 206 AKAGYYAS--RYKRFGNLCYVIGALQAFMGHRNQDLRVKVNEGEWEEYSQVTALCIGNAKYFGGGMK-ITPNADPRNGYF 282 (359)
Q Consensus 206 a~~~~~~~--~~~~~G~~~Y~~~~l~~l~~~~~~~~~i~~d~~~~~~~~~~~~~~v~N~~~~ggg~~-i~P~a~~~DG~l 282 (359)
+.+....+ .++++|+++|++++++.++++++++++++.|++.+.. +..+++|+|++++++.+. -.|+|+++||.|
T Consensus 140 a~v~~~~~~~~k~~~G~~aY~~~~l~~l~~~~~~~~~i~~dg~~~~~--~~~~i~v~N~~~~~~~~~~g~p~a~~~DG~l 217 (300)
T PRK00861 140 AETVEEADREAKNRFGILAYILSGLQQLRELESFEVEIETEDQIITT--NAVAVTVANAAPPTSVLAQGPGAVIPDDGLL 217 (300)
T ss_pred HHHHHHhhHHHHhcccHHHHHHHHHHHhccCCCeeEEEEECCeEEEE--EEEEEEEECCCCcccccccCCCCCCCCCceE
Confidence 99876543 4567899999999999999999999999999886543 677899999975432211 158999999999
Q ss_pred EEEEEecCCHHHHHH----HHHhhhCCeeeeeCCEEEEEEeEEEEEeccCCCCceEEecCCCCCccceEEEEeCCeeEEe
Q 018199 283 EVVILQDFKWYDFIL----KLLKLYNGTHLSVKNVTSRRAHSIEVEDISSGDSIYVQSDGEHLGFLPRKLCVLPAAIEMI 358 (359)
Q Consensus 283 dv~~v~~~~~~~ll~----~l~~~~~G~~~~~~~v~~~~~~~i~i~~~~~~~~~~~~iDGE~~~~~p~~i~v~p~~l~vl 358 (359)
||+++++.+++++++ ++.+++.|+|.+.+.|+++++++++|+. +++.++++|||+++.+|++++++|++++++
T Consensus 218 dv~iv~~~~~~~~l~~~~~l~~~~~~g~~~~~~~v~~~~~~~i~I~~---~~~~~~~~DGE~~~~~p~~i~v~p~al~v~ 294 (300)
T PRK00861 218 DVTIVAPKNLAEAVAASYHLLQTALQGNPAERDDIGYLRAKQVKITT---DPPQKVVIDGEVVGTTPIEIECLPRSLKVF 294 (300)
T ss_pred EEEEEcCCCHHHHHHHHHHHHHHHhcCCCCCCCceEEEEccEEEEEe---CCCeEEEECCccCCCceEEEEEECCEEEEE
Confidence 999999999998875 3445678999999999999999999996 567899999999999999999999999998
Q ss_pred C
Q 018199 359 C 359 (359)
Q Consensus 359 ~ 359 (359)
+
T Consensus 295 ~ 295 (300)
T PRK00861 295 A 295 (300)
T ss_pred e
Confidence 5
No 8
>PRK13054 lipid kinase; Reviewed
Probab=100.00 E-value=3.9e-57 Score=421.56 Aligned_cols=288 Identities=25% Similarity=0.378 Sum_probs=253.4
Q ss_pred CCCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEecCCchHHHHHHHHHHHcCCCEEEEEeCCchHHHHHhH
Q 018199 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNG 124 (359)
Q Consensus 45 ~~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTv~evlng 124 (359)
.|+++++|+||+++ +.+.|.++++.|.+. ++++.+..|+.++|+.++++++..+++|.||++|||||+|||+|+
T Consensus 2 ~~~~~~~i~N~~~~---~~~~~~~~~~~l~~~---g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vvv~GGDGTl~evv~~ 75 (300)
T PRK13054 2 TFPKSLLILNGKSA---GNEELREAVGLLREE---GHTLHVRVTWEKGDAARYVEEALALGVATVIAGGGDGTINEVATA 75 (300)
T ss_pred CCceEEEEECCCcc---chHHHHHHHHHHHHc---CCEEEEEEecCCCcHHHHHHHHHHcCCCEEEEECCccHHHHHHHH
Confidence 37899999999975 235677777777654 356777889999999999999888889999999999999999999
Q ss_pred hHhCCccccccccccCCcceEEEeeCcChhhhhhhcCCCCCHHHHHHHHHcCCeeeEeEEEEEccCCCce-EEEEEeccc
Q 018199 125 FFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRNDPYEAVERIAKGVRSWVDVGVINGETGEPH-YFINVADLH 203 (359)
Q Consensus 125 l~~~~~~~~~~~~~~~~~~~lgiiP~GTgN~~Ar~lg~~~~~~~al~~i~~g~~~~iD~~~v~~~~~~~~-~f~~~~~~G 203 (359)
|+... ...++|||+||+||+|||||+||+|.++++|++.+.+|+++++|++++|+ + ||+|++++|
T Consensus 76 l~~~~---------~~~~~~lgiiP~GTgNdfar~lgi~~~~~~a~~~i~~g~~~~iDlg~v~~-----~~~f~n~~~~G 141 (300)
T PRK13054 76 LAQLE---------GDARPALGILPLGTANDFATAAGIPLEPDKALKLAIEGRAQPIDLARVND-----RTYFINMATGG 141 (300)
T ss_pred HHhhc---------cCCCCcEEEEeCCcHhHHHHhcCCCCCHHHHHHHHHhCCceEEEEEEEcC-----ceEEEEEeecc
Confidence 98532 12468999999999999999999999999999999999999999999987 6 999999999
Q ss_pred cchhhcccc--cccccccChhhHHHHHHHHhcCCCCcEEEEEcCeeEEEecceEEEEEeCcccccCCceeCCCCCCCCCe
Q 018199 204 LSAKAGYYA--SRYKRFGNLCYVIGALQAFMGHRNQDLRVKVNEGEWEEYSQVTALCIGNAKYFGGGMKITPNADPRNGY 281 (359)
Q Consensus 204 ~~a~~~~~~--~~~~~~G~~~Y~~~~l~~l~~~~~~~~~i~~d~~~~~~~~~~~~~~v~N~~~~ggg~~i~P~a~~~DG~ 281 (359)
+++.+.... +.++.+|+++|++++++.++++++++++++.|+++++. ++++++|+|++++||++.++|+|+++||+
T Consensus 142 ~~a~v~~~~~~~~k~~~G~~~Y~~~~l~~l~~~~~~~~~i~~d~~~~~~--~~~~~~v~N~~~~ggg~~~~p~a~~~DG~ 219 (300)
T PRK13054 142 FGTRVTTETPEKLKAALGGVAYLIHGLMRMDTLKPDRCEIRGPDFHWQG--DALVIGIGNGRQAGGGQQLCPEALINDGL 219 (300)
T ss_pred hhHHHHHhhHHHHHhccchHHHHHHHHHHHhhCCCeEEEEEeCCcEEEe--eEEEEEEECCCcCCCCcccCCCCcCCCCe
Confidence 999987654 23456899999999999999999999999999887764 78899999999999999999999999999
Q ss_pred eEEEEEecCCHHHHHHHHHhhhCCeeeeeCCEEEEEEeEEEEEeccCCCCceEEecCCCCCccceEEEEeCCeeEEeC
Q 018199 282 FEVVILQDFKWYDFILKLLKLYNGTHLSVKNVTSRRAHSIEVEDISSGDSIYVQSDGEHLGFLPRKLCVLPAAIEMIC 359 (359)
Q Consensus 282 ldv~~v~~~~~~~ll~~l~~~~~G~~~~~~~v~~~~~~~i~i~~~~~~~~~~~~iDGE~~~~~p~~i~v~p~~l~vl~ 359 (359)
|||+++++ ++.++..++.++.|++...+.|+++++++++|+. ++++++++|||+++..|++++++|++++|++
T Consensus 220 ldv~~~~~--~~~~l~~l~~~~~g~~~~~~~v~~~~~~~v~i~~---~~~~~~~iDGE~~~~~p~~i~v~p~al~vl~ 292 (300)
T PRK13054 220 LDLRILPA--PQELLPTLLSTLTGGSEDNPNIIRARLPWLEIQA---PHELTFNLDGEPLSGRHFRIEVLPAALRCRL 292 (300)
T ss_pred EEEEEECC--HHHHHHHHHHHHhCCCCCCCcEEEEECCEEEEEc---CCCCEEEeCCCcCCCccEEEEEEcCeeEEEe
Confidence 99999998 6677777777788866668899999999999985 4679999999999999999999999999985
No 9
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=100.00 E-value=1.1e-56 Score=417.25 Aligned_cols=284 Identities=28% Similarity=0.401 Sum_probs=247.1
Q ss_pred cEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEecCCchHHHHHHHHHHHcCCCEEEEEeCCchHHHHHhHhHh
Q 018199 48 DLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFS 127 (359)
Q Consensus 48 ~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTv~evlngl~~ 127 (359)
++++|+||+||. .+.|.++++.|++. +++++++.|+.++|+.++++++..+++|.||++|||||+|||+|+|+.
T Consensus 1 ~~~~I~N~~~~~---~~~~~~~~~~l~~~---g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vv~~GGDGTi~ev~ngl~~ 74 (293)
T TIGR03702 1 KALLILNGKQAD---NEDVREAVGDLRDE---GIQLHVRVTWEKGDAQRYVAEALALGVSTVIAGGGDGTLREVATALAQ 74 (293)
T ss_pred CEEEEEeCCccc---hhHHHHHHHHHHHC---CCeEEEEEecCCCCHHHHHHHHHHcCCCEEEEEcCChHHHHHHHHHHh
Confidence 578999999863 34566777777664 356777789999999999999888889999999999999999999985
Q ss_pred CCccccccccccCCcceEEEeeCcChhhhhhhcCCCCCHHHHHHHHHcCCeeeEeEEEEEccCCCceEEEEEeccccchh
Q 018199 128 AGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRNDPYEAVERIAKGVRSWVDVGVINGETGEPHYFINVADLHLSAK 207 (359)
Q Consensus 128 ~~~~~~~~~~~~~~~~~lgiiP~GTgN~~Ar~lg~~~~~~~al~~i~~g~~~~iD~~~v~~~~~~~~~f~~~~~~G~~a~ 207 (359)
+. ....+|||+||+||+|||||+||+|.+++++++.+.+|+++++|++++++ .+||+|++++|++|.
T Consensus 75 ~~---------~~~~~~lgiiP~GTgNdfAr~l~ip~~~~~a~~~i~~g~~~~iDlg~v~~----~~~f~n~~~~G~da~ 141 (293)
T TIGR03702 75 IR---------DDAAPALGLLPLGTANDFATAAGIPLEPAKALKLALNGAAQPIDLARVNG----KHYFLNMATGGFGTR 141 (293)
T ss_pred hC---------CCCCCcEEEEcCCchhHHHHhcCCCCCHHHHHHHHHhCCceeeeEEEECC----ccEEEEEeecccchH
Confidence 32 12357999999999999999999999999999999999999999999984 279999999999999
Q ss_pred hcccc--cccccccChhhHHHHHHHHhcCCCCcEEEEEcCeeEEEecceEEEEEeCcccccCCceeCCCCCCCCCeeEEE
Q 018199 208 AGYYA--SRYKRFGNLCYVIGALQAFMGHRNQDLRVKVNEGEWEEYSQVTALCIGNAKYFGGGMKITPNADPRNGYFEVV 285 (359)
Q Consensus 208 ~~~~~--~~~~~~G~~~Y~~~~l~~l~~~~~~~~~i~~d~~~~~~~~~~~~~~v~N~~~~ggg~~i~P~a~~~DG~ldv~ 285 (359)
+.... +.++++|+++|++++++.++++++++++++.|+.++.. ++++++|+|++|+|||+.++|+|+++||.||++
T Consensus 142 v~~~~~~~~k~~~G~~aY~~~~l~~l~~~~~~~~~i~~~~~~~~~--~~~~~~v~N~~~~GGg~~i~P~A~~~DG~Ldv~ 219 (293)
T TIGR03702 142 VTTETSEKLKKALGGAAYLITGLTRFSELTAASCEFRGPDFHWEG--DFLALGIGNGRQAGGGQVLCPDALINDGLLDVR 219 (293)
T ss_pred hhhhhhHHHHhccchHHHHHHHHHHHhhCCCeEEEEEECCEEEEe--eEEEEEEECCCcCCCCceeCCCCccCCceEEEE
Confidence 87654 34456899999999999999999999999998877653 678899999999999999999999999999999
Q ss_pred EEecCCHHHHHHHHHhhhCCeeeeeCCEEEEEEeEEEEEeccCCCCceEEecCCCCCccceEEEEeCCeeEEeC
Q 018199 286 ILQDFKWYDFILKLLKLYNGTHLSVKNVTSRRAHSIEVEDISSGDSIYVQSDGEHLGFLPRKLCVLPAAIEMIC 359 (359)
Q Consensus 286 ~v~~~~~~~ll~~l~~~~~G~~~~~~~v~~~~~~~i~i~~~~~~~~~~~~iDGE~~~~~p~~i~v~p~~l~vl~ 359 (359)
++++ ++.+++.++.+++|++ .+.+.++++++++|+. ++++++++|||.++..|+++++.|++++|++
T Consensus 220 ~v~~--~~~~~~~l~~~~~g~~--~~~~~~~~~~~i~i~~---~~~~~~~vDGE~~~~~p~~i~v~p~al~v~~ 286 (293)
T TIGR03702 220 ILPA--PELLPATLSTLFGGDK--NPEFVRARLPWLEIEA---PQPLTFNLDGEPLSGRHFRIEVLPGALRCHL 286 (293)
T ss_pred EeCC--HHHHHHHHHHHhcCCC--CCcEEEEEcCEEEEEe---CCCcEEEECCCcCCCceEEEEEEcCeEEEEc
Confidence 9987 5677788888888863 4678888999999986 5679999999999999999999999999985
No 10
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=100.00 E-value=1.7e-56 Score=414.53 Aligned_cols=290 Identities=33% Similarity=0.542 Sum_probs=266.3
Q ss_pred CCCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEecCCchHHHHHHHHHHHcCCCEEEEEeCCchHHHHHhH
Q 018199 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNG 124 (359)
Q Consensus 45 ~~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTv~evlng 124 (359)
+++++.+|+||.||+++..+.|+++.+.|+++ .+++..+.|+..+||.++++++...++|.||++|||||+|||+|+
T Consensus 1 ~~~~~~~i~Np~sG~~~~~~~~~~~~~~l~~~---g~~~~~~~t~~~g~a~~~a~~a~~~~~D~via~GGDGTv~eving 77 (301)
T COG1597 1 RMKKALLIYNPTSGKGKAKKLLREVEELLEEA---GHELSVRVTEEAGDAIEIAREAAVEGYDTVIAAGGDGTVNEVANG 77 (301)
T ss_pred CCceEEEEEcccccccchhhHHHHHHHHHHhc---CCeEEEEEeecCccHHHHHHHHHhcCCCEEEEecCcchHHHHHHH
Confidence 47899999999999999999999999888875 356667788888999999999999999999999999999999999
Q ss_pred hHhCCccccccccccCCcceEEEeeCcChhhhhhhcCCCCC-HHHHHHHHHcCCeeeEeEEEEEccCCCce-EEEEEecc
Q 018199 125 FFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRND-PYEAVERIAKGVRSWVDVGVINGETGEPH-YFINVADL 202 (359)
Q Consensus 125 l~~~~~~~~~~~~~~~~~~~lgiiP~GTgN~~Ar~lg~~~~-~~~al~~i~~g~~~~iD~~~v~~~~~~~~-~f~~~~~~ 202 (359)
|++.+ ..+||+||+||+|||||+||+|.+ +.+|++.+.+|+++++|++++++ + ||+|++++
T Consensus 78 l~~~~------------~~~LgilP~GT~NdfAr~Lgip~~~~~~Al~~i~~g~~~~vDlg~~~~-----~~~fin~a~~ 140 (301)
T COG1597 78 LAGTD------------DPPLGILPGGTANDFARALGIPLDDIEAALELIKSGETRKVDLGQVNG-----RRYFINNAGI 140 (301)
T ss_pred HhcCC------------CCceEEecCCchHHHHHHcCCCchhHHHHHHHHHcCCeEEEeehhcCC-----cceEEEEeec
Confidence 98643 122999999999999999999995 99999999999999999998887 5 99999999
Q ss_pred ccchhhccccc--ccccccChhhHHHHHHHHhcCCCCcEEEEEcCeeEEEecceEEEEEeCcccccCCceeCCCCCCCCC
Q 018199 203 HLSAKAGYYAS--RYKRFGNLCYVIGALQAFMGHRNQDLRVKVNEGEWEEYSQVTALCIGNAKYFGGGMKITPNADPRNG 280 (359)
Q Consensus 203 G~~a~~~~~~~--~~~~~G~~~Y~~~~l~~l~~~~~~~~~i~~d~~~~~~~~~~~~~~v~N~~~~ggg~~i~P~a~~~DG 280 (359)
|++|++...++ +++.+|.++|+++++..+.+.++++++|++|++.|+. ...++.+.|+.++||+..++|+++++||
T Consensus 141 G~~a~~~~~~~~~~k~~~g~~~y~~~~~~~l~~~~~~~~~i~~d~~~~~~--~~~~~~~~~~~~~gg~~~~~p~a~~~dG 218 (301)
T COG1597 141 GFDAEVVAAVEEERKKGFGRLAYALAGLAVLARLKPFRIEIEYDGKTFEG--EALALLVFNGNSYGGGMKLAPDASLDDG 218 (301)
T ss_pred chhHHHHHhhcHHHHhccchHHHHHHHHHhccccCCCcEEEEEcCcEEEE--EEEEEEEecCcccccccccCCcCCCCCc
Confidence 99999988775 4556899999999999999999999999999999876 5677888888899999999999999999
Q ss_pred eeEEEEEecCCHHHHHHHHHhhhCCeeeeeCCEEEEEEeEEEEEeccCCCCceEEecCCCCCccceEEEEeCCeeEEeC
Q 018199 281 YFEVVILQDFKWYDFILKLLKLYNGTHLSVKNVTSRRAHSIEVEDISSGDSIYVQSDGEHLGFLPRKLCVLPAAIEMIC 359 (359)
Q Consensus 281 ~ldv~~v~~~~~~~ll~~l~~~~~G~~~~~~~v~~~~~~~i~i~~~~~~~~~~~~iDGE~~~~~p~~i~v~p~~l~vl~ 359 (359)
.||++++++.+++++++.+..+++|+|...+.|++.++++++|++ ++++.+++|||+.+..|++++++|++|++++
T Consensus 219 ~l~~~i~~~~~~~~~~~l~~~~~~G~~~~~~~v~~~~~~~~~i~~---~~~~~~~~DGE~~~~~p~~i~~~p~al~vl~ 294 (301)
T COG1597 219 LLDVYILKPQSLLELLALLPDLLRGKHLENPDVEYLRAKKLEITS---DPPIPVNLDGEYLGKTPVTIEVLPGALRVLV 294 (301)
T ss_pred eEEEEEEccccHHHHHHHHHHHhCCCccCCCCeEEEeccEEEEEc---CCCceEeeCCccCCCCcEEEEEecccEEEEc
Confidence 999999999999999999999999999999999999999999996 5789999999999999999999999999985
No 11
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=100.00 E-value=3.9e-56 Score=414.15 Aligned_cols=290 Identities=27% Similarity=0.435 Sum_probs=260.3
Q ss_pred CCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEecCCchHHHHHHHHHHHcCCCEEEEEeCCchHHHHHhHh
Q 018199 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGF 125 (359)
Q Consensus 46 ~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTv~evlngl 125 (359)
|+|+++|+||+||+++..+.|+++.+.|.+. ++++.+..|+..+++.+.++++...++|.||++|||||+|+|+|+|
T Consensus 1 ~~~~~ii~Np~sg~~~~~~~~~~i~~~l~~~---~~~~~~~~t~~~~~~~~~~~~~~~~~~d~ivv~GGDGTl~~v~~~l 77 (293)
T TIGR00147 1 MAEAPAILNPTAGKSNDNKPLREVIMLLREE---GMEIHVRVTWEKGDAARYVEEARKFGVDTVIAGGGDGTINEVVNAL 77 (293)
T ss_pred CceEEEEECCCccchhhHHHHHHHHHHHHHC---CCEEEEEEecCcccHHHHHHHHHhcCCCEEEEECCCChHHHHHHHH
Confidence 5799999999999988888888888888764 3556667888888888888777677899999999999999999999
Q ss_pred HhCCccccccccccCCcceEEEeeCcChhhhhhhcCCCCCHHHHHHHHHcCCeeeEeEEEEEccCCCceE-EEEEecccc
Q 018199 126 FSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRNDPYEAVERIAKGVRSWVDVGVINGETGEPHY-FINVADLHL 204 (359)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~lgiiP~GTgN~~Ar~lg~~~~~~~al~~i~~g~~~~iD~~~v~~~~~~~~~-f~~~~~~G~ 204 (359)
... ...+|||+||.||+|+||++|+++.++.++++.+.+++.+++|++++++ +| |+|++++|+
T Consensus 78 ~~~-----------~~~~~lgiiP~Gt~N~~a~~l~i~~~~~~~~~~l~~~~~~~~Dlg~v~~-----~~~fln~~g~G~ 141 (293)
T TIGR00147 78 IQL-----------DDIPALGILPLGTANDFARSLGIPEDLDKAAKLVIAGDARAIDMGQVNK-----QYCFINMAGGGF 141 (293)
T ss_pred hcC-----------CCCCcEEEEcCcCHHHHHHHcCCCCCHHHHHHHHHcCCceEEEEEEECC-----eEEEEEEEeech
Confidence 742 2347999999999999999999999999999999999999999999997 89 999999999
Q ss_pred chhhcccc--cccccccChhhHHHHHHHHhcCCCCcEEEEEcCeeEEEecceEEEEEeCcccccCCceeCCCCCCCCCee
Q 018199 205 SAKAGYYA--SRYKRFGNLCYVIGALQAFMGHRNQDLRVKVNEGEWEEYSQVTALCIGNAKYFGGGMKITPNADPRNGYF 282 (359)
Q Consensus 205 ~a~~~~~~--~~~~~~G~~~Y~~~~l~~l~~~~~~~~~i~~d~~~~~~~~~~~~~~v~N~~~~ggg~~i~P~a~~~DG~l 282 (359)
++.+.... +.++++|+++|++++++.+.+++++++++++|++.++. +..+++|+|++++||++.++|+++++||.|
T Consensus 142 ~a~v~~~~~~~~k~~~g~~~Y~~~~l~~l~~~~~~~~~i~~d~~~~~~--~~~~~~v~n~~~~gg~~~~~p~a~~~DG~l 219 (293)
T TIGR00147 142 GTEITTETPEKLKAALGSLSYILSGLMRMDTLQPFRCEIRGEGEHWQG--EAVVFLVGNGRQAGGGQKLAPDASINDGLL 219 (293)
T ss_pred hhHhHhhCCHHHHhccchHHHHHHHHHHHhhCCCeeEEEEECCeEEEe--eEEEEEEeCCcccCCCcccCCccccCCCee
Confidence 99986544 34457899999999999999999999999999988764 667788999999999999999999999999
Q ss_pred EEEEEecCCHHHHHHHHHhhhCCeeeeeCCEEEEEEeEEEEEeccCCCCceEEecCCCCCccceEEEEeCCeeEEeC
Q 018199 283 EVVILQDFKWYDFILKLLKLYNGTHLSVKNVTSRRAHSIEVEDISSGDSIYVQSDGEHLGFLPRKLCVLPAAIEMIC 359 (359)
Q Consensus 283 dv~~v~~~~~~~ll~~l~~~~~G~~~~~~~v~~~~~~~i~i~~~~~~~~~~~~iDGE~~~~~p~~i~v~p~~l~vl~ 359 (359)
||+++++.+++++++.+++++.|+|...|.++++++++++|+. +++.++++|||.++..|++++++|++++++.
T Consensus 220 ~v~~v~~~~~~~~~~~~~~~~~G~~~~~~~v~~~~~~~~~i~~---~~~~~~~iDGE~~~~~p~~i~v~p~al~~~~ 293 (293)
T TIGR00147 220 DLRIFTNDNLLPALVLTLMSDEGKHTDNPNIIYGKASRIDIQT---PHKITFNLDGEPLGGTPFHIEILPAHLRCRL 293 (293)
T ss_pred EEEEEcCCCHHHHHHHHHHHhcCCCCCCCcEEEEEccEEEEEc---CCCcEEEeCCCcCCCCcEEEEEEhhccEEeC
Confidence 9999999999999999999999999999999999999999996 5678999999999999999999999999973
No 12
>PLN02204 diacylglycerol kinase
Probab=100.00 E-value=3.1e-52 Score=405.99 Aligned_cols=312 Identities=20% Similarity=0.320 Sum_probs=259.3
Q ss_pred CCCCCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEecCCchHHHHHHHHHH---HcCCCEEEEEeCCchHH
Q 018199 43 SSRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAI---KEGADAVIAVGGDGTLH 119 (359)
Q Consensus 43 ~~~~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t~~~~~a~~~~~~~~---~~~~d~ivv~GGDGTv~ 119 (359)
..++|+++||+||.||+|++.+.|+++.|.|..+ .+++.++.|+.++||.++++++. ..++|.||++|||||+|
T Consensus 156 ~~r~k~llVivNP~sGkg~~~~~~~~V~p~f~~a---~i~~~v~~T~~aghA~d~~~~~~~~~l~~~D~VVaVGGDGt~n 232 (601)
T PLN02204 156 VGRPKNLLVFVHPLSGKGSGSRTWETVSPIFIRA---KVKTKVIVTERAGHAFDVMASISNKELKSYDGVIAVGGDGFFN 232 (601)
T ss_pred cCCCceEEEEECCCCCCcchHHHHHHHHHHHHHc---CCeEEEEEecCcchHHHHHHHHhhhhccCCCEEEEEcCccHHH
Confidence 5778999999999999999999999999999864 46677889999999999987654 56899999999999999
Q ss_pred HHHhHhHhCCcc----ccc-----------------c----------cc------------------------------c
Q 018199 120 EVVNGFFSAGKL----VTN-----------------H----------NR------------------------------E 138 (359)
Q Consensus 120 evlngl~~~~~~----~~~-----------------~----------~~------------------------------~ 138 (359)
||+|||+.+... ..+ + ++ .
T Consensus 233 EVlNGL~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (601)
T PLN02204 233 EILNGYLLSRLKVPYPPSPSDSVHSVQSRGSSSVHEPNETVHECDNEDHSPLLSDSVQEVMNFRTENGSCEGDQDSDFPF 312 (601)
T ss_pred HHHHHHhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999842100 000 0 00 0
Q ss_pred cCCcceEEEeeCcChhhhhhhcCCCCCHHHHHHHHHcCCeeeEeEEEEEccC--------CCceEEEEEeccccchhhcc
Q 018199 139 SAHSTALGLIPLGTGSDFARTFGWRNDPYEAVERIAKGVRSWVDVGVINGET--------GEPHYFINVADLHLSAKAGY 210 (359)
Q Consensus 139 ~~~~~~lgiiP~GTgN~~Ar~lg~~~~~~~al~~i~~g~~~~iD~~~v~~~~--------~~~~~f~~~~~~G~~a~~~~ 210 (359)
...+++|||||+||+|+||+.+..+.|+.+++..|+.|+.+++|+++++... ...+||+|++++||++++..
T Consensus 313 ~~~~~~lGIIPaGSgN~~a~~~~g~~dp~taa~~Ii~G~~~~lDig~V~~~~~~~~~~~~~~~ryf~s~ag~Gf~gdVi~ 392 (601)
T PLN02204 313 PNERFRFGIIPAGSTDAIVMCTTGERDPVTSALHIILGRRVCLDIAQVVRWKTTSTSEIEPYVRYAASFAGYGFYGDVIS 392 (601)
T ss_pred cCCCceEEEECCccHHHHHHHccCCCCHHHHHHHHHhCCCeEeeEEEEecccccccccccccceEEEEEeecchHHHHHH
Confidence 1356899999999999999999889999999999999999999999997521 12489999999999999988
Q ss_pred cccccccccChhhHHHHHHHHhcCCCCcEEEEEcCeeEEEec---------------ce---EEEEEeCcc---------
Q 018199 211 YASRYKRFGNLCYVIGALQAFMGHRNQDLRVKVNEGEWEEYS---------------QV---TALCIGNAK--------- 263 (359)
Q Consensus 211 ~~~~~~~~G~~~Y~~~~l~~l~~~~~~~~~i~~d~~~~~~~~---------------~~---~~~~v~N~~--------- 263 (359)
.++++||+|+++|.+++++.|++++.++++|+.+++.+.... .+ ..+.|+|.+
T Consensus 393 esek~R~mG~~rY~~~g~k~~~~~r~y~~~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~c~Vcn~~~~~~~~~~~ 472 (601)
T PLN02204 393 ESEKYRWMGPKRYDYAGTKVFLKHRSYEAEVAYLETESEKSKASSEARKRTGPKKSEKIVCRTNCSVCNTKVSTNSPSTT 472 (601)
T ss_pred HhhhhcccchHHHHHHHHHHHHhCCCceEEEEECCeEeeecccccccccccccccccchhhhhheeeecccccccccccc
Confidence 888999999999999999999999999999999987654210 01 136677744
Q ss_pred ------------cccCC------c----------eeCCCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-C-CeeeeeCCE
Q 018199 264 ------------YFGGG------M----------KITPNADPRNGYFEVVILQDFKWYDFILKLLKLY-N-GTHLSVKNV 313 (359)
Q Consensus 264 ------------~~ggg------~----------~i~P~a~~~DG~ldv~~v~~~~~~~ll~~l~~~~-~-G~~~~~~~v 313 (359)
..|+. + .++|+|+++||.|||+++++.+++.+++.+.++. + |+|.+.+.|
T Consensus 473 p~~~~~~~~W~~~~G~f~~vG~~iis~~~~rap~gl~pdA~l~DG~LDLilVr~~s~~~~L~~L~~l~~~gG~~l~~~~V 552 (601)
T PLN02204 473 PNSCPEETRWLRSKGRFLSVGAAIISNRNERAPDGLVADAHLSDGFLHLILIKDCPHPLYLWHLTQLAKRGGEPLNFEFV 552 (601)
T ss_pred cccccccccceeecCceEEeeeecccccccccccccCCCCcCCCCeEEEEEECCCCHHHHHHHHHHHHhhcCccCCCCcE
Confidence 12222 1 1679999999999999999999999999988887 3 689999999
Q ss_pred EEEEEeEEEEEeccCCCCceEEecCCCCCccceEEEEeCCeeEEeC
Q 018199 314 TSRRAHSIEVEDISSGDSIYVQSDGEHLGFLPRKLCVLPAAIEMIC 359 (359)
Q Consensus 314 ~~~~~~~i~i~~~~~~~~~~~~iDGE~~~~~p~~i~v~p~~l~vl~ 359 (359)
+++++++++|++. .++..+++|||.++..|++++++|++++|++
T Consensus 553 e~~ktk~f~~~s~--~~~~~~niDGE~~~~~~v~v~V~~~al~lfa 596 (601)
T PLN02204 553 EHHKTPAFTFTSF--GDESVWNLDGEIFQAHQLSAQVFRGLVNLFA 596 (601)
T ss_pred EEEEeeEEEEEEC--CCCceEEeCCCcCCCccEEEEEEcCeeEEEe
Confidence 9999999999862 3467799999999999999999999999984
No 13
>PRK12361 hypothetical protein; Provisional
Probab=100.00 E-value=5.7e-50 Score=401.60 Aligned_cols=283 Identities=23% Similarity=0.348 Sum_probs=243.8
Q ss_pred CCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEecCCchHHHHHHHHHHHcCCCEEEEEeCCchHHHHHhHh
Q 018199 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGF 125 (359)
Q Consensus 46 ~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTv~evlngl 125 (359)
++++++|+||+||+++..+.++++.+.|.+. +++.++.|+.++|+.++++++..+++|.||++|||||||||+|+|
T Consensus 242 ~~~~~iI~NP~SG~g~~~~~~~~i~~~L~~~----~~~~v~~t~~~~~a~~la~~~~~~~~d~Viv~GGDGTl~ev~~~l 317 (547)
T PRK12361 242 HKRAWLIANPVSGGGKWQEYGEQIQRELKAY----FDLTVKLTTPEISAEALAKQARKAGADIVIACGGDGTVTEVASEL 317 (547)
T ss_pred CCceEEEECCCCCCCcHHHHHHHHHHHHhcC----CceEEEECCCCccHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHH
Confidence 6899999999999999888888888888753 467778899999999999998888899999999999999999999
Q ss_pred HhCCccccccccccCCcceEEEeeCcChhhhhhhc-CCCC---CHHHHHHHHHcCCeeeEeEEEEEccCCCceEEEEEec
Q 018199 126 FSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTF-GWRN---DPYEAVERIAKGVRSWVDVGVINGETGEPHYFINVAD 201 (359)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~lgiiP~GTgN~~Ar~l-g~~~---~~~~al~~i~~g~~~~iD~~~v~~~~~~~~~f~~~~~ 201 (359)
.. .++|||+||+||+|||||+| |++. +++++++.+.+|+.+++|++++|+ ++|+|+++
T Consensus 318 ~~-------------~~~~lgiiP~GTgNdfAr~L~gi~~~~~~~~~a~~~i~~g~~~~iD~g~vn~-----~~fln~ag 379 (547)
T PRK12361 318 VN-------------TDITLGIIPLGTANALSHALFGLGSKLIPVEQACDNIIQGHTQRIDTARCND-----RLMLLLVG 379 (547)
T ss_pred hc-------------CCCCEEEecCCchhHHHHHhcCCCCCCccHHHHHHHHHhCCCeEEEEEEEcC-----eEEEEEEe
Confidence 63 45899999999999999999 8873 799999999999999999999998 89999999
Q ss_pred cccchhhcccc--cccccccChhhHHHHHHHHhcCCCCcEEEEEcCeeEEEecceEEEEEeCcccc------cCCceeCC
Q 018199 202 LHLSAKAGYYA--SRYKRFGNLCYVIGALQAFMGHRNQDLRVKVNEGEWEEYSQVTALCIGNAKYF------GGGMKITP 273 (359)
Q Consensus 202 ~G~~a~~~~~~--~~~~~~G~~~Y~~~~l~~l~~~~~~~~~i~~d~~~~~~~~~~~~~~v~N~~~~------ggg~~i~P 273 (359)
+|+++.+..+. ++++++|+++|+.++++.+.+++++++++++|+++... .++.+++|+|++++ |+|
T Consensus 380 iG~da~v~~~~~~~~k~~~G~laY~~~~~~~l~~~~~~~l~i~~dg~~~~~-~~~~~l~v~N~~~~~~~~~~Ggg----- 453 (547)
T PRK12361 380 IGFEQKMIESADRERKNALGQLAYLDGLWRAVNENETLTLTVTLDDAEPQT-ISTHSLVVANAAPFTSLLAQGGG----- 453 (547)
T ss_pred echhHHHHHhccHHHHhccCHHHHHHHHHHHhhcCCCeeEEEEECCCCceE-EEEEEEEEEcCCCcccccccCCC-----
Confidence 99999987654 34567899999999999999999999999999875433 26777889998654 544
Q ss_pred CCCCCCCeeEEEEEecCCH--HHHHHHHHhhhCC--eeeeeCCEEEEEEeEEEEEeccCCCCceEEecCCCCCccceEEE
Q 018199 274 NADPRNGYFEVVILQDFKW--YDFILKLLKLYNG--THLSVKNVTSRRAHSIEVEDISSGDSIYVQSDGEHLGFLPRKLC 349 (359)
Q Consensus 274 ~a~~~DG~ldv~~v~~~~~--~~ll~~l~~~~~G--~~~~~~~v~~~~~~~i~i~~~~~~~~~~~~iDGE~~~~~p~~i~ 349 (359)
.++++||.|||+++++.+. ..++..+..++.| ++...+.|+++++++++|+. ++++++++|||+++..|++++
T Consensus 454 ~~~~~DG~Ldv~~v~~~~~~~~~l~~l~~~~~~g~~~~~~~~~v~~~~~k~v~I~~---~~~~~~~iDGE~~~~~p~~i~ 530 (547)
T PRK12361 454 EPNMTDGLLDITWLDSGGEPGEQLLSLAELALSGLGKEPEANKVHHAHAKKVTISS---QKPIKYVIDGELFEDEDLTIE 530 (547)
T ss_pred CCCCCCceeEEEEEcCCCcchHHHHHHHHHHHHHhcccCCCCceEEEEeeEEEEEe---CCceEEEECCccCCceEEEEE
Confidence 3579999999999998763 4666555555544 45677899999999999995 568999999999999999999
Q ss_pred EeCCeeEEeC
Q 018199 350 VLPAAIEMIC 359 (359)
Q Consensus 350 v~p~~l~vl~ 359 (359)
+.|++++|++
T Consensus 531 v~p~al~vlv 540 (547)
T PRK12361 531 VQPASLKVFV 540 (547)
T ss_pred EecCceEEEe
Confidence 9999999985
No 14
>KOG1116 consensus Sphingosine kinase, involved in sphingolipid metabolism [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=3.8e-48 Score=370.03 Aligned_cols=311 Identities=28% Similarity=0.453 Sum_probs=270.6
Q ss_pred CCCCCCCCCCcEEEEEcCCCCCCchhhhHHH-HHHHHHhccccccceEEEecCCchHHHHHHHHHHHcCCCEEEEEeCCc
Q 018199 38 HGAASSSRRRDLVFVVNPRGASGRTGKEWKK-LLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDG 116 (359)
Q Consensus 38 ~~~~~~~~~~~~~iiiNP~SG~g~~~~~~~~-~~~~l~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDG 116 (359)
++....+++++++||+||++|+|++.+.|++ +.|.|.+ +++.+++..|++++||+++++.+...+||.||++||||
T Consensus 171 ~~~~~~~r~~~lLV~iNP~gGkGka~~~F~~~v~Pll~~---A~i~~evv~T~~~~HArei~rt~dl~kyDgIv~vsGDG 247 (579)
T KOG1116|consen 171 KSVDSLKRPRRLLVFINPFGGKGKAKKLFKNHVEPLLSE---AGISFEVVLTTRPNHAREIVRTLDLGKYDGIVCVSGDG 247 (579)
T ss_pred ccccccCCCccEEEEECCCCCCccHHHHHHhhhhhhhhh---cCceEEEEEecCccHHHHHHHhhhccccceEEEecCCc
Confidence 4667889999999999999999999999986 5677775 36788899999999999999999889999999999999
Q ss_pred hHHHHHhHhHhCCccccccccccCCcceEEEeeCcChhhhhhhcCCCCC---HHHHHHHHHcCCeeeEeEEEEEccCCCc
Q 018199 117 TLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRND---PYEAVERIAKGVRSWVDVGVINGETGEP 193 (359)
Q Consensus 117 Tv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~GTgN~~Ar~lg~~~~---~~~al~~i~~g~~~~iD~~~v~~~~~~~ 193 (359)
++|||+|||+++. |+....++|||+||+||||+||+++.+... +..|...+++|...++|+..+...++..
T Consensus 248 l~hEVlNGLl~R~------D~~~~~klPigiiP~GSGNala~Sv~~~~~~~~~~~a~l~iirg~~t~~dv~~v~~~~~~~ 321 (579)
T KOG1116|consen 248 LLHEVLNGLLERP------DWEAAVKLPIGIIPCGSGNALAKSVLWTNGPDLPLLATLLIIRGRLTPMDVSVVEYAGKDR 321 (579)
T ss_pred CHHHhhhcccccc------chhhHhcCceeEeecCCccHHHHHhhcccCcccchHHHHHHHccCCCchheeehhhccCcc
Confidence 9999999999876 577889999999999999999999998874 7788888999999999999999877766
Q ss_pred eEEEEEeccccchhhcccccccccccChhhHHHHHHHHhcCCCCcEEEEEcC----------------------------
Q 018199 194 HYFINVADLHLSAKAGYYASRYKRFGNLCYVIGALQAFMGHRNQDLRVKVNE---------------------------- 245 (359)
Q Consensus 194 ~~f~~~~~~G~~a~~~~~~~~~~~~G~~~Y~~~~l~~l~~~~~~~~~i~~d~---------------------------- 245 (359)
+|++++++||+.|++..++|++||+|..||.++++..++..+.|+.++++..
T Consensus 322 ~fSfLs~~wGlIADiDI~SEk~R~mG~~Rf~lg~~~rl~~lr~Y~gri~ylp~~~k~~~~~~~~~~~~~~~~~~~~~~a~ 401 (579)
T KOG1116|consen 322 HFSFLSAAWGLIADVDIESEKYRWMGPARFTLGAFLRLIQLRKYKGRIEYLPAKGKSAEPLPAHELEAADSEGCLSTHAD 401 (579)
T ss_pred eEEEEeeeeeeEEecccchHHHHhhcchhhhHHHHHHHHhccCCCceEEEecccccccCcccchhhcccccccccccccc
Confidence 8999999999999999999999999999999999999998888877766532
Q ss_pred -----------------------------------------------eeEEEec--ceEEEEEeCcccccCCceeCCCCC
Q 018199 246 -----------------------------------------------GEWEEYS--QVTALCIGNAKYFGGGMKITPNAD 276 (359)
Q Consensus 246 -----------------------------------------------~~~~~~~--~~~~~~v~N~~~~ggg~~i~P~a~ 276 (359)
..|...+ .+..+.-.-..|+|+.+.++|.|.
T Consensus 402 ~~~s~~~~~~~~~~~~~~~~~s~~~e~s~~~~~~~~~~~p~~~~p~psdw~~~~~~d~~~~~a~~~sy~~~d~~~~P~A~ 481 (579)
T KOG1116|consen 402 TEPSEYPRLSVPKMSPKSVLRSPVSETSPVIPEDPLHLSPPLEEPLPSDWEVVPGVDFVCILAILLSYLGADMKFAPAAR 481 (579)
T ss_pred ccccccccccccccCccccccCcccccCcccCCccccCCCcccCCCCcceeeecCcceeeeehhhhhhccCCcccccccc
Confidence 1233221 122222222349999999999999
Q ss_pred CCCCeeEEEEEecC-CHHHHHHHHHhhhCCeee--eeCCEEEEEEeEEEEEeccCCCCceEEecCCCCCccceEEEEeCC
Q 018199 277 PRNGYFEVVILQDF-KWYDFILKLLKLYNGTHL--SVKNVTSRRAHSIEVEDISSGDSIYVQSDGEHLGFLPRKLCVLPA 353 (359)
Q Consensus 277 ~~DG~ldv~~v~~~-~~~~ll~~l~~~~~G~~~--~~~~v~~~~~~~i~i~~~~~~~~~~~~iDGE~~~~~p~~i~v~p~ 353 (359)
++||.+|+++++.. ++.+++.+++++..|.|. ..|.|.+++++.+++++.+ .+..+++|||.++..|++++++|+
T Consensus 482 ~~dg~I~lv~~~~~~~r~~ll~~llald~gsh~~~~~p~v~~~~vra~r~epv~--~~~~~~vDGE~~~~ep~q~~v~p~ 559 (579)
T KOG1116|consen 482 PDDGLIHLVIVRAGGSRTQLLRLLLALDKGSHLHVECPFVKYVKVRAFRLEPVT--PSGYFAVDGELVPLEPLQVQVLPG 559 (579)
T ss_pred cCCCeEEEEEEccCCcHHHHHHHHHhhcccccccccCCceeEEEeEEEEEEEec--CCceEEecccEeeccceeEEeccc
Confidence 99999999999875 888999999999999997 7799999999999999853 448899999999999999999999
Q ss_pred eeEEeC
Q 018199 354 AIEMIC 359 (359)
Q Consensus 354 ~l~vl~ 359 (359)
.+.++.
T Consensus 560 ~i~~~s 565 (579)
T KOG1116|consen 560 LILTLS 565 (579)
T ss_pred ceeEEe
Confidence 998863
No 15
>KOG1115 consensus Ceramide kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-36 Score=276.68 Aligned_cols=313 Identities=20% Similarity=0.306 Sum_probs=251.7
Q ss_pred CCCCCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEecCCchHHHHHHHHHH---HcCCCEEEEEeCCchHH
Q 018199 43 SSRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAI---KEGADAVIAVGGDGTLH 119 (359)
Q Consensus 43 ~~~~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t~~~~~a~~~~~~~~---~~~~d~ivv~GGDGTv~ 119 (359)
..+||.++|++||.+|+|++.++|+.+.+.+-.+ .+.+.++.|+.++||.+.+.++. ...+|.||++||||..|
T Consensus 155 ~~RPknllvFinPfgGkG~g~ki~e~V~~~F~la---~v~tkvivTErAnhA~d~~~ei~~~~~~~yDGiv~VGGDG~Fn 231 (516)
T KOG1115|consen 155 VERPKNLLVFINPFGGKGNGSKIWETVSKIFILA---KVNTKVIVTERANHAFDVMAEIQNKELHTYDGIVAVGGDGFFN 231 (516)
T ss_pred hcCCccEEEEEcCCCCCCcccchhhhhhhhEEee---ecceeEEEEccccchhhhhhhCCHhhhhhcccEEEecCchhHH
Confidence 3679999999999999999999999976665432 36677899999999999887754 35799999999999999
Q ss_pred HHHhHhHhCCccc-----cc-cccccCCcceEEEeeCcChhhhhhhcCCCCCHHHHHHHHHcCCeeeEeEEEEEccCCCc
Q 018199 120 EVVNGFFSAGKLV-----TN-HNRESAHSTALGLIPLGTGSDFARTFGWRNDPYEAVERIAKGVRSWVDVGVINGETGEP 193 (359)
Q Consensus 120 evlngl~~~~~~~-----~~-~~~~~~~~~~lgiiP~GTgN~~Ar~lg~~~~~~~al~~i~~g~~~~iD~~~v~~~~~~~ 193 (359)
|++||++.+.... .+ ........+.+||||+||+|.+.-...-..|++..+-+|+-|+..-+|+..+.....--
T Consensus 232 EiL~G~llrtQ~~ag~~i~~P~~~lv~~~~RfGiIpAGStd~iv~~t~gt~D~~TSAlHI~lG~~l~vDVctVht~~kLi 311 (516)
T KOG1115|consen 232 EILNGYLLRTQEVAGFRIEDPDHPLVSERPRFGIIPAGSTDAIVMCTTGTRDPVTSALHIILGRKLFVDVCTVHTIEKLI 311 (516)
T ss_pred HHHhhhhhhhhhhcCcccCCCCCcccCCCceeeeecCCCcCeEEEEeccCCccccceeeeEeccceeeeeeeeeecchhe
Confidence 9999998764211 11 12224467889999999999999888888899888888999999999999998765557
Q ss_pred eEEEEEeccccchhhcccccccccccChhhHHHHHHHHhcCCCCcEEEEE---------------------cCeeEEE-e
Q 018199 194 HYFINVADLHLSAKAGYYASRYKRFGNLCYVIGALQAFMGHRNQDLRVKV---------------------NEGEWEE-Y 251 (359)
Q Consensus 194 ~~f~~~~~~G~~a~~~~~~~~~~~~G~~~Y~~~~l~~l~~~~~~~~~i~~---------------------d~~~~~~-~ 251 (359)
||-.+.++.||..++..++|++||+|..||-+++++++++.+.++.+|.. +.++|.. .
T Consensus 312 RysaSa~gYGFyGDvl~dSEKYRWmGp~RYDfsglKtflkH~~YegeVsFlpa~sen~~qe~~~~g~~~~~~~k~Wq~~~ 391 (516)
T KOG1115|consen 312 RYSASAAGYGFYGDVLSDSEKYRWMGPKRYDFSGLKTFLKHRSYEGEVSFLPAESENPCQEPCPSGASLHTRSKTWQRNT 391 (516)
T ss_pred eeehhhhcccccchhhhhhhhhhccCchhhhhHHHHHHHhccccceEEEecccccCCchhccccccCCcccCcchhhhhh
Confidence 89999999999999999999999999999999999999999998888764 1223321 1
Q ss_pred cceEEEEEeCcccccCC--ceeCCCCCCCCCeeEEEEEecCCHHHHHHHHHhhh-CCeeeeeCCEEEEEEeEEEEEecc-
Q 018199 252 SQVTALCIGNAKYFGGG--MKITPNADPRNGYFEVVILQDFKWYDFILKLLKLY-NGTHLSVKNVTSRRAHSIEVEDIS- 327 (359)
Q Consensus 252 ~~~~~~~v~N~~~~ggg--~~i~P~a~~~DG~ldv~~v~~~~~~~ll~~l~~~~-~G~~~~~~~v~~~~~~~i~i~~~~- 327 (359)
+++..+.+++.+..-.. -.++|.+.++||.+|+++++..+++.++.++.+.. .++.-+.+.|+.+.+.++...+..
T Consensus 392 g~Fl~V~c~aipciC~~~PrGLaP~T~LndGs~dLil~R~~SRF~fi~fl~r~a~~~~qfdf~fVe~y~v~~v~~~s~~~ 471 (516)
T KOG1115|consen 392 GRFLKVLCRAIPCICNSKPRGLAPSTTLNDGSEDLILCRTKSRFLFIGFLVRSARNERQFDFLFVEAYLVDGVLHLSLIK 471 (516)
T ss_pred hheeeeeEeeccccccCCCCCcCCccccCCCccceeeeecccchHHHHHHHHHhhcccccCceeeeeeeeeeEEEEeecC
Confidence 24555555655544321 22689999999999999999999999999887654 455567778888899888876532
Q ss_pred ---CCCCceEEecCCCCCcc-ceEEEEeCCeeEEe
Q 018199 328 ---SGDSIYVQSDGEHLGFL-PRKLCVLPAAIEMI 358 (359)
Q Consensus 328 ---~~~~~~~~iDGE~~~~~-p~~i~v~p~~l~vl 358 (359)
.++...+++|||++... |++|+++|+-++++
T Consensus 472 d~~~~d~~eWN~DGeile~p~~lh~rlHpqLIslf 506 (516)
T KOG1115|consen 472 DCSRPDYLEWNLDGEILEQPKPLHFRLHPQLISLF 506 (516)
T ss_pred CCCCCCcceeccCcchhcCCcceEEEechhhHhHh
Confidence 23456799999999864 99999999988765
No 16
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=99.95 E-value=3.9e-27 Score=222.15 Aligned_cols=277 Identities=21% Similarity=0.324 Sum_probs=198.5
Q ss_pred CCCCCCCCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEecCCchHHHHHHHHHHHcCCCEEEEEeCCchHH
Q 018199 40 AASSSRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLH 119 (359)
Q Consensus 40 ~~~~~~~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTv~ 119 (359)
+.+++.+++++||+||+||++++.|..+.+..+|..+. +......++..+.++-++.. .-.|++|||||||.
T Consensus 359 PtsSplmkPLLVFVNPKSGGNqGsK~lq~f~WyLNPRQ-----VFDlsq~GPK~aLEmyRKV~---nLRILaCGGDGTVG 430 (1004)
T KOG0782|consen 359 PTSSPLMKPLLVFVNPKSGGNQGSKALQTFCWYLNPRQ-----VFDLSQLGPKFALEMYRKVV---NLRILACGGDGTVG 430 (1004)
T ss_pred cCCCCCCCceEEEecCCCCCcchHHHHHHHHHhcChhh-----heehhccCcHHHHHHHHhcc---ceEEEEecCCCcee
Confidence 45788899999999999999999888777777765431 22234457888888887754 35799999999999
Q ss_pred HHHhHhHhCCccccccccccCCcceEEEeeCcChhhhhhhcCCCC----C-HHHHHHHHHcCCeeeEeEEEEEccCC---
Q 018199 120 EVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRN----D-PYEAVERIAKGVRSWVDVGVINGETG--- 191 (359)
Q Consensus 120 evlngl~~~~~~~~~~~~~~~~~~~lgiiP~GTgN~~Ar~lg~~~----~-~~~al~~i~~g~~~~iD~~~v~~~~~--- 191 (359)
+++.-|-. ......+|++|+|+|||||+||.|+|.. + ..+.+.++..|.+..+|-+.+.-+..
T Consensus 431 WiLStLD~---------L~l~p~PPvailPLGTGNDLARtlnWGGgytDEPvSkil~~ve~gtvVqLDRW~lhvEpNp~~ 501 (1004)
T KOG0782|consen 431 WILSTLDN---------LNLPPYPPVAILPLGTGNDLARTLNWGGGYTDEPVSKILQAVEHGTVVQLDRWRLHVEPNPSC 501 (1004)
T ss_pred ehhhhhhh---------cCCCCCCCeeEeecCCcchHHHhcccCCCcCcchHHHHHHHHhcCcEEeeeeeeecccCCCCC
Confidence 99998842 2345679999999999999999999873 2 46788899999999999999864311
Q ss_pred -------C------ceEEEEEeccccchhhccccc--------cc--ccccChhhHHHHHHHHhcCCC----CcEEEEEc
Q 018199 192 -------E------PHYFINVADLHLSAKAGYYAS--------RY--KRFGNLCYVIGALQAFMGHRN----QDLRVKVN 244 (359)
Q Consensus 192 -------~------~~~f~~~~~~G~~a~~~~~~~--------~~--~~~G~~~Y~~~~l~~l~~~~~----~~~~i~~d 244 (359)
+ -..|.|++++||||.+..+.. +. |...++.|.-.++.-|++... ..+++.-|
T Consensus 502 ~pEe~ddG~~~~LPL~VfnNYFSlGfDAHVtLeFHeSReANPekfNSRfrNkmfYaG~afsDfl~rSskDL~khi~vvCD 581 (1004)
T KOG0782|consen 502 NPEEEDDGMQSALPLTVFNNYFSLGFDAHVTLEFHESREANPEKFNSRFRNKMFYAGLAFSDFLKRSSKDLCKHITVVCD 581 (1004)
T ss_pred ChhhhcccchhccchhHhhccccccccceEEEEeccccccCHHHHHHHHhhhhhhcchhHHHHHhhhhHHhhhheEEEec
Confidence 0 136899999999999876431 11 234677787666666654332 35788888
Q ss_pred CeeE----EEecceEEEEEeCcccccCCceeCCC---------CCCCCCeeEEEEEecCCHHHHHHHHHhhhCCeeeeeC
Q 018199 245 EGEW----EEYSQVTALCIGNAKYFGGGMKITPN---------ADPRNGYFEVVILQDFKWYDFILKLLKLYNGTHLSVK 311 (359)
Q Consensus 245 ~~~~----~~~~~~~~~~v~N~~~~ggg~~i~P~---------a~~~DG~ldv~~v~~~~~~~ll~~l~~~~~G~~~~~~ 311 (359)
|... .++ +...++..|.++|.+|-..+-. ...+||+++|+-+.-.+ +.++-.|.|-
T Consensus 582 G~DlTPkIqeL-K~qCivFlNIprYcaGTmPWG~pgdhhDfePqrhdDGyvEViGFTmas-------LAALQvGGhG--- 650 (1004)
T KOG0782|consen 582 GVDLTPKIQEL-KLQCIVFLNIPRYCAGTMPWGEPGDHHDFEPQRHDDGYVEVIGFTMAS-------LAALQVGGHG--- 650 (1004)
T ss_pred CccCChhhhhc-ccceEEEecchhhhcCccCCCCCCccccCCccccCCceEEEEeeeHHH-------HHHHhhcCcc---
Confidence 7542 121 4556778899988877544322 23689999999775432 2333445552
Q ss_pred CEEEEEEeEEEEEeccCCCCceEEecCCCCCccceEE
Q 018199 312 NVTSRRAHSIEVEDISSGDSIYVQSDGEHLGFLPRKL 348 (359)
Q Consensus 312 ~v~~~~~~~i~i~~~~~~~~~~~~iDGE~~~~~p~~i 348 (359)
-...+++++.+.+ .+.+++|+|||+....|-.|
T Consensus 651 -ERl~QCreV~l~T---~KaIPmQVDGEPC~LAps~I 683 (1004)
T KOG0782|consen 651 -ERLAQCREVRLIT---NKAIPMQVDGEPCLLAPSII 683 (1004)
T ss_pred -hhhhhceeEEEEe---ccccceeecCcchhcchhhe
Confidence 2446888888875 67899999999988766433
No 17
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=99.95 E-value=5.9e-27 Score=191.72 Aligned_cols=127 Identities=38% Similarity=0.626 Sum_probs=101.5
Q ss_pred cEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEecCCchHHHHHHHHHHHcCC-CEEEEEeCCchHHHHHhHhH
Q 018199 48 DLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGA-DAVIAVGGDGTLHEVVNGFF 126 (359)
Q Consensus 48 ~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~-d~ivv~GGDGTv~evlngl~ 126 (359)
|++||+||+||++++. |+++.+.+.... .++.++.|+..+++..+++....+.+ |.||++|||||+|+++|+++
T Consensus 1 k~~vi~Np~sG~~~~~--~~~v~~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~~~ivv~GGDGTl~~vv~~l~ 75 (130)
T PF00781_consen 1 KVLVIINPKSGGGRAK--WKKVEPALRAAG---IDYEVIETESAGHAEALARILALDDYPDVIVVVGGDGTLNEVVNGLM 75 (130)
T ss_dssp SEEEEEETTSTTSHHH--HHHHHHHHHHTT---CEEEEEEESSTTHHHHHHHHHHHTTS-SEEEEEESHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCCchh--HHHHHHHHHHcC---CceEEEEEeccchHHHHHHHHhhccCccEEEEEcCccHHHHHHHHHh
Confidence 6899999999999876 678888888753 44667788888888888874445555 99999999999999999998
Q ss_pred hCCccccccccccCCcceEEEeeCcChhhhhhhcCCCCCHHH-HHHHHHcCCeeeEeEEEEEc
Q 018199 127 SAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRNDPYE-AVERIAKGVRSWVDVGVING 188 (359)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~lgiiP~GTgN~~Ar~lg~~~~~~~-al~~i~~g~~~~iD~~~v~~ 188 (359)
... ...++|||+||+||+|+|||+||++.++++ ++..+..+..+++|+++++.
T Consensus 76 ~~~---------~~~~~~l~iiP~GT~N~~ar~lg~~~~~~~~a~~~~~~~~~~~~d~~~v~~ 129 (130)
T PF00781_consen 76 GSD---------REDKPPLGIIPAGTGNDFARSLGIPSDPEANAALLIILGRVRKIDVGKVNT 129 (130)
T ss_dssp TST---------SSS--EEEEEE-SSS-HHHHHTT--SSHHH-HHHHHHHSEEEEEEEEEETT
T ss_pred hcC---------CCccceEEEecCCChhHHHHHcCCCCCcHHHHHHHHHhCCCcEeEEEEeCC
Confidence 654 123789999999999999999999999988 77777888888999999864
No 18
>KOG1169 consensus Diacylglycerol kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=99.95 E-value=1.4e-26 Score=225.16 Aligned_cols=291 Identities=18% Similarity=0.272 Sum_probs=189.7
Q ss_pred CCCCCCCCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEE-ecCCchHHHHHHHHHHHcCCCEEEEEeCCchH
Q 018199 40 AASSSRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICES-LTSGPSHAIDITREAIKEGADAVIAVGGDGTL 118 (359)
Q Consensus 40 ~~~~~~~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~-~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTv 118 (359)
....+.-++++||+||+||+..+....+++...|... .+... .+..+.....+.++. ....|+|||||||+
T Consensus 265 ~~~~~~~~PLlVfvNpKSGg~~G~~ll~~f~~lLnp~-----QVfdl~~~~~p~~gL~l~~~~---~~~riLVcGGDGTv 336 (634)
T KOG1169|consen 265 VTDPPDWRPLLVFVNPKSGGQQGERLLRRFRYLLNPV-----QVFDLLKRGGPRPGLTLFRDV---PDFRILVCGGDGTV 336 (634)
T ss_pred cCCCCCCcceEEEEecCCcccccHHHHHHHHHhcChh-----hEEecccCCCCchhHHHHHhC---CcceEEEecCCCcc
Confidence 3455667899999999999888776655544443321 22222 222355555555543 34489999999999
Q ss_pred HHHHhHhHhCCccccccccccCCcceEEEeeCcChhhhhhhcCCCC----C---HHHHHHHHHcCCeeeEeEEEEEccCC
Q 018199 119 HEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRN----D---PYEAVERIAKGVRSWVDVGVINGETG 191 (359)
Q Consensus 119 ~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~GTgN~~Ar~lg~~~----~---~~~al~~i~~g~~~~iD~~~v~~~~~ 191 (359)
-+|++.+-+... ......+|+||+|+|||||++|.|++.. . +...++.+..+.+..+|-+++.-...
T Consensus 337 GWVL~~i~~~n~------~~~~~~PpVAilPLGTGNDLsR~l~WGgg~~g~~~~~~~iL~~i~~a~v~~lDrW~v~v~~~ 410 (634)
T KOG1169|consen 337 GWVLGCIDKLNK------QNAIPPPPVAILPLGTGNDLSRVLRWGGGYPGEDRNLIKILKDIEEAPVTKLDRWKVLVEPQ 410 (634)
T ss_pred hhhhhhHHHhhc------cccCCCCCeEEEecCCCCchHhhcCCCCCCCcchhhHHHHHHhhhhccceecceeeEEeecc
Confidence 999998854211 0123578999999999999999998863 2 67788888899999999988864211
Q ss_pred ------------------CceEEEEEeccccchhhccccc----cc------ccccChhhHHHHHHHHhcC--C--CCcE
Q 018199 192 ------------------EPHYFINVADLHLSAKAGYYAS----RY------KRFGNLCYVIGALQAFMGH--R--NQDL 239 (359)
Q Consensus 192 ------------------~~~~f~~~~~~G~~a~~~~~~~----~~------~~~G~~~Y~~~~l~~l~~~--~--~~~~ 239 (359)
...+|.|++|+|.||.+.+... ++ +.+.++.|+--+.+..+.. + ..+.
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~imnNYFSIGvDA~Ia~~FH~~Re~~PekF~Sr~~NKl~Yf~~G~q~~f~~~ck~~~~~i 490 (634)
T KOG1169|consen 411 SGELVQYSLKPPEKGDPVPYGIMNNYFSIGVDAQIAYGFHNMREKNPEKFNSRMKNKLWYFEFGTQETFAARCKNLHLHI 490 (634)
T ss_pred ccccccccccCCCcCCCCCeeeEeeeeeecccHHHHHHHHHHhhhChHhhcchhhceeeeeeecchhhHHHhhcCCccce
Confidence 1357889999999999987542 11 2246677766553333221 1 2445
Q ss_pred EEEEcC--eeEEEec-ceEEEEEeCcccccCCceeCCC-------------CCCCCCeeEEEEEecCCHHHHHHHHHhhh
Q 018199 240 RVKVNE--GEWEEYS-QVTALCIGNAKYFGGGMKITPN-------------ADPRNGYFEVVILQDFKWYDFILKLLKLY 303 (359)
Q Consensus 240 ~i~~d~--~~~~~~~-~~~~~~v~N~~~~ggg~~i~P~-------------a~~~DG~ldv~~v~~~~~~~ll~~l~~~~ 303 (359)
+++.++ ++.. .+ ....+++-|.+++|||-+++-. ++.+||.++++.+++..... .....+.
T Consensus 491 ~i~~~~d~~dl~-~p~sleGIv~LNIpS~ggG~nlWg~~~~~~~~~~~~~~~d~~dgliEvvgv~~~~h~~--~~qvgL~ 567 (634)
T KOG1169|consen 491 KIELDGDGEDLE-LPKSLEGIVVLNIPSWGGGSNLWGNSNKSKGNFRGFSEADDDDGLIEVVGVQDSWHLL--QEQVGLE 567 (634)
T ss_pred EEEEcccceEcc-CCCCceeEEEEcccccccCcccccccCccccccccccccCCCcCeEEEEEeccchhhh--hhhhccc
Confidence 555543 3332 22 5678999999999999877643 12345999999998864432 2333444
Q ss_pred CCeeeeeCCEEEEEEeEEEEEeccCCCCceEEecCCCCCccceEEEEeCC
Q 018199 304 NGTHLSVKNVTSRRAHSIEVEDISSGDSIYVQSDGEHLGFLPRKLCVLPA 353 (359)
Q Consensus 304 ~G~~~~~~~v~~~~~~~i~i~~~~~~~~~~~~iDGE~~~~~p~~i~v~p~ 353 (359)
.+.++.- ...+..++.|.. .++.++|+|||+....|.+|+|..+
T Consensus 568 ~a~rigQ---~~a~~~~~~i~~---~k~~PMQiDGEPW~Q~p~tI~Ithk 611 (634)
T KOG1169|consen 568 SALRIGQ---RLAQCSERVIGT---KKTFPMQIDGEPWMQPPCTIEITHK 611 (634)
T ss_pred hhhHHHH---HhhccEEEEecc---ccCcceecCCccccCCCceEEEEec
Confidence 4443321 001122233443 5689999999999888877777544
No 19
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=99.89 E-value=4.7e-23 Score=166.87 Aligned_cols=108 Identities=29% Similarity=0.468 Sum_probs=77.5
Q ss_pred EEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEecCCchHHHHHHHHHHHcCCCEEEEEeCCchHHHHHhHhHhCC
Q 018199 50 VFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAG 129 (359)
Q Consensus 50 ~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTv~evlngl~~~~ 129 (359)
+||+||+||++++.+.++++...+... .+....++...++.++++++ ..+|.|+++|||||+|+|+|+|+...
T Consensus 1 lvi~NP~sG~~~~~~~~~~~~~~l~~~-----~v~~t~~~~~~~~~~~~~~~--~~~d~vvv~GGDGTi~~vvn~l~~~~ 73 (124)
T smart00046 1 LVFVNPKSGGGKGVKLLRKFRLLLNPA-----QVFDLTKKGPAAALVIFRDL--PKFDRVLVCGGDGTVGWVLNALDKRE 73 (124)
T ss_pred CEEEcCCCCCCccHHHHHHHHHHcCCc-----eEEEEecCChHHHHHHHhhc--CcCCEEEEEccccHHHHHHHHHHhcc
Confidence 479999999999877666655544321 22222233445555555443 35889999999999999999998543
Q ss_pred ccccccccccCCcceEEEeeCcChhhhhhhcCCCCCHHHHHHH
Q 018199 130 KLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRNDPYEAVER 172 (359)
Q Consensus 130 ~~~~~~~~~~~~~~~lgiiP~GTgN~~Ar~lg~~~~~~~al~~ 172 (359)
. ....+|||+||+||+|||||+||++.++.++...
T Consensus 74 ~--------~~~~~plgiiP~GTgNdfar~lgi~~~~~~~~~~ 108 (124)
T smart00046 74 L--------PLPEPPVAVLPLGTGNDLARSLGWGGGYDGEKLL 108 (124)
T ss_pred c--------ccCCCcEEEeCCCChhHHHHHcCCCCCcccccHH
Confidence 1 1123899999999999999999999887655433
No 20
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=99.87 E-value=1.4e-23 Score=191.32 Aligned_cols=196 Identities=18% Similarity=0.221 Sum_probs=149.1
Q ss_pred CCcccccCCCC-CCC-CCCCCCCCCCcEEEEEcCCCCCCchhhhHHH-HHHHHHhccccccceEEEecCCchHHHHHHHH
Q 018199 24 EHPMALDLSPN-PIS-HGAASSSRRRDLVFVVNPRGASGRTGKEWKK-LLPYLRSRLSVDCNICESLTSGPSHAIDITRE 100 (359)
Q Consensus 24 ~~~~~~~~~~~-~~~-~~~~~~~~~~~~~iiiNP~SG~g~~~~~~~~-~~~~l~~~~~~~~~~~~~~t~~~~~a~~~~~~ 100 (359)
+..||.||+++ ++| ..-++..++||++|++||.+.++.....+++ .+|.|+.+ ++++++..|++.+||+.++..
T Consensus 36 ~~~rre~a~~aq~~g~t~vpp~~~~Kkv~V~~Np~ank~~~r~~f~kna~P~lHLa---G~~V~Ivktd~~gqak~l~e~ 112 (535)
T KOG4435|consen 36 QGIRREYAKIAQKYGETTVPPETRPKKVFVLVNPEANKRGCRDQFNKNALPLLHLA---GVQVDIVKTDNQGQAKALAEA 112 (535)
T ss_pred HHHHHHHHHHHHHhccccCCcccccceEEEEechhhccchhhhhhhcccchheeec---cceEEEEecCcHHHHHHHHHH
Confidence 44789999999 999 5567888999999999999887665555544 56777753 678888999999999999877
Q ss_pred HHHcCCCEEEEEeCCchHHHHHhHhHhCCccccccccccCCcceEEEeeCcChhhhhhhcCCC--------CCHHHHHHH
Q 018199 101 AIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWR--------NDPYEAVER 172 (359)
Q Consensus 101 ~~~~~~d~ivv~GGDGTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~GTgN~~Ar~lg~~--------~~~~~al~~ 172 (359)
+.. ..|+|+|+|||||+.||++|++++. ....|++++|.|--|.-..+.-.. ...-+|+++
T Consensus 113 ~~t-~~Dii~VaGGDGT~~eVVTGi~Rrr----------~~~~pv~~~P~G~~~l~~~s~l~~vfe~~d~V~h~~~a~~a 181 (535)
T KOG4435|consen 113 VDT-QEDIIYVAGGDGTIGEVVTGIFRRR----------KAQLPVGFYPGGYDNLWLKSMLPSVFENSDDVRHACEAAMA 181 (535)
T ss_pred hcc-CCCeEEEecCCCcHHHhhHHHHhcc----------cccCceeeccCccchHhhhhhchhhhccchHHHHHHHHHHH
Confidence 654 4599999999999999999999753 467899999999988776554221 124678888
Q ss_pred HHcCCe---eeEeEEEEEccCCCceEEEEEeccccchhhcccccccccccChhhHHHHHHHHhcC
Q 018199 173 IAKGVR---SWVDVGVINGETGEPHYFINVADLHLSAKAGYYASRYKRFGNLCYVIGALQAFMGH 234 (359)
Q Consensus 173 i~~g~~---~~iD~~~v~~~~~~~~~f~~~~~~G~~a~~~~~~~~~~~~G~~~Y~~~~l~~l~~~ 234 (359)
+++++. .++|+.. .+..-.+.|-++-++||+.-++....+++|.||+++--++.+...++.
T Consensus 182 vikde~ksv~~fdv~~-~gs~l~P~fgl~glswG~frdi~~~~~KyWYfgplk~~aA~f~s~lk~ 245 (535)
T KOG4435|consen 182 VIKDEKKSVYAFDVTT-EGSTLAPEFGLGGLSWGWFRDIEDTRKKYWYFGPLKRRAAYFWSMLKR 245 (535)
T ss_pred HhcccccceEEEEecc-CCCccccccccCccchhhhhhhhhhhhheeeecHHHHHHHHHHHHHhc
Confidence 888877 5667755 222223567788999999998887778888899875444555554443
No 21
>smart00045 DAGKa Diacylglycerol kinase accessory domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain might either be an accessory domain or else contribute to the catalytic domain. Bacterial homologues are known.
Probab=99.80 E-value=1.2e-19 Score=153.73 Aligned_cols=134 Identities=14% Similarity=0.205 Sum_probs=106.5
Q ss_pred EEEEeccccchhhccccc--c--------cccccChhhHHHHHHHHhc--CC--CCcEEEEEcCeeEEEec-ceEEEEEe
Q 018199 196 FINVADLHLSAKAGYYAS--R--------YKRFGNLCYVIGALQAFMG--HR--NQDLRVKVNEGEWEEYS-QVTALCIG 260 (359)
Q Consensus 196 f~~~~~~G~~a~~~~~~~--~--------~~~~G~~~Y~~~~l~~l~~--~~--~~~~~i~~d~~~~~~~~-~~~~~~v~ 260 (359)
|+|++|+|+||.+....+ + ++.+|+++|++.+++.+++ ++ +++++|++|++++.. . .+.+++++
T Consensus 2 ~~N~~giGfDA~V~~~~~~~r~~~~~~~~~~~~g~l~Y~~~~l~~l~~~~~~~~~~~~~i~~dg~~~~~-~~~~~~v~v~ 80 (160)
T smart00045 2 MNNYFSIGVDAHIALEFHNKREANPEKFNSRLKNKMWYFELGTKDLFFRTCKDLHERIELECDGVDVDL-PNSLEGIAVL 80 (160)
T ss_pred ccccccccHhHHHHHHHHHHhhcCchhhcccceeeeeeeecchHHhhhccccchhhceEEEECCEeccC-CCCccEEEEE
Confidence 789999999999876432 2 2357999999999999964 33 357899999977543 3 47789999
Q ss_pred CcccccCCceeC----------CCCCCCCCeeEEEEEecCCHHHHHHHHHhhhCCeeeeeCCEEEEEEeEEEEEeccCCC
Q 018199 261 NAKYFGGGMKIT----------PNADPRNGYFEVVILQDFKWYDFILKLLKLYNGTHLSVKNVTSRRAHSIEVEDISSGD 330 (359)
Q Consensus 261 N~~~~ggg~~i~----------P~a~~~DG~ldv~~v~~~~~~~ll~~l~~~~~G~~~~~~~v~~~~~~~i~i~~~~~~~ 330 (359)
|+++||||+.++ |+|+++||.||++++++.+++.++. |...+.+++.++++++|+.. .++
T Consensus 81 N~~~~ggG~~i~p~~~~~~~~~p~a~~~DG~ldv~~~~~~~~~~~~~---------~~~~~~v~~~~~~~v~i~i~-~~~ 150 (160)
T smart00045 81 NIPSYGGGTNLWGTTDKEDLNFSKQSHDDGLLEVVGLTGAMHMAQIR---------QVGLAGRRIAQCSEVRITIK-TSK 150 (160)
T ss_pred CCCccccCcccccCCcccccccCCCCCCCceEEEEEEcCchhhhhhh---------hccCCCceeecCceEEEEEe-cCC
Confidence 999999999999 8899999999999999977654331 34567888999999984432 367
Q ss_pred CceEEecCCC
Q 018199 331 SIYVQSDGEH 340 (359)
Q Consensus 331 ~~~~~iDGE~ 340 (359)
++++|+|||+
T Consensus 151 ~~~~q~DGE~ 160 (160)
T smart00045 151 TIPMQVDGEP 160 (160)
T ss_pred ceeeecCCCC
Confidence 8999999995
No 22
>PF00609 DAGK_acc: Diacylglycerol kinase accessory domain; InterPro: IPR000756 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. The DAG kinase domain is assumed to be an accessory domain. Upon cell stimulation, DAG kinase converts DAG into phosphatidate, initiating the resynthesis of phosphatidylinositols and attenuating protein kinase C activity. It catalyses the reaction: ATP + 1,2-diacylglycerol = ADP + 1,2-diacylglycerol 3-phosphate. The enzyme is stimulated by calcium and phosphatidylserine and phosphorylated by protein kinase C. This domain is always associated with IPR001206 from INTERPRO.; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway
Probab=99.49 E-value=1.8e-13 Score=115.86 Aligned_cols=133 Identities=18% Similarity=0.245 Sum_probs=99.4
Q ss_pred EEEEeccccchhhcccccc----c------ccccChhhHHHHHHHHhcCC----CCcEEEEEcCeeEEEecceEEEEEeC
Q 018199 196 FINVADLHLSAKAGYYASR----Y------KRFGNLCYVIGALQAFMGHR----NQDLRVKVNEGEWEEYSQVTALCIGN 261 (359)
Q Consensus 196 f~~~~~~G~~a~~~~~~~~----~------~~~G~~~Y~~~~l~~l~~~~----~~~~~i~~d~~~~~~~~~~~~~~v~N 261 (359)
|.|++|+|+||.+++.... . +..+++.|...+++.++... +..++++.|+++..-......+++.|
T Consensus 2 ~~NYfsiG~DA~ia~~Fh~~R~~~P~~f~sr~~NK~~Y~~~g~k~~~~~~~~~~~~~i~l~~dg~~~~lp~~~~~iv~lN 81 (161)
T PF00609_consen 2 MNNYFSIGVDAQIALGFHHSREKNPEKFNSRLLNKLWYAFFGFKALFQRSCKNLPKKIELEVDGKEVDLPSSLESIVFLN 81 (161)
T ss_pred eEecccccHhhHHHHHHhhccccChhhhccHHHHHHHHHHHHHHHHHhchhcCchhhcccccCCeeEeeecceeEEEEEc
Confidence 7899999999999775432 2 34578999999999887432 34578888998865323678899999
Q ss_pred cccccCCceeCCC------------CCCCCCeeEEEEEecCCHHHHHHHHHhhhCCeeeeeCCEEEEEEeEEEEEeccCC
Q 018199 262 AKYFGGGMKITPN------------ADPRNGYFEVVILQDFKWYDFILKLLKLYNGTHLSVKNVTSRRAHSIEVEDISSG 329 (359)
Q Consensus 262 ~~~~ggg~~i~P~------------a~~~DG~ldv~~v~~~~~~~ll~~l~~~~~G~~~~~~~v~~~~~~~i~i~~~~~~ 329 (359)
.++|+||..+++. .+++||+|+|+.+.+.-.+ .. ...|.. ..+...|++.++|+. .
T Consensus 82 IpSy~gG~~~W~~~~~~~~~~~~~~~~~~Dg~lEVvg~~~~~hl--~~----~~~g~~---~~~rl~Q~~~i~i~~---~ 149 (161)
T PF00609_consen 82 IPSYGGGVDLWGNSKPDRSKLKFKKQSMDDGKLEVVGFRGSFHL--GQ----IQAGLS---SAKRLAQGRPIRIET---K 149 (161)
T ss_pred cccccCCcccccCCcccccccccccccccCceEEEEEEcCchhh--hh----hhhccC---CceEeecCCEEEEEE---C
Confidence 9999999988865 3468999999999875322 21 222221 346778999999997 4
Q ss_pred C-CceEEecCCC
Q 018199 330 D-SIYVQSDGEH 340 (359)
Q Consensus 330 ~-~~~~~iDGE~ 340 (359)
+ ++++|+|||+
T Consensus 150 ~~~~~~QvDGEp 161 (161)
T PF00609_consen 150 ENKVPFQVDGEP 161 (161)
T ss_pred CCceeEEeCCCC
Confidence 5 8999999996
No 23
>KOG1170 consensus Diacylglycerol kinase [Lipid transport and metabolism]
Probab=99.41 E-value=3.8e-13 Score=132.60 Aligned_cols=145 Identities=15% Similarity=0.175 Sum_probs=92.8
Q ss_pred EEEEeccccchhhcccccccc----------cccChhhHHHHHHHHhc--CCC--CcEEEEEcCeeEEEecceEEEEEeC
Q 018199 196 FINVADLHLSAKAGYYASRYK----------RFGNLCYVIGALQAFMG--HRN--QDLRVKVNEGEWEEYSQVTALCIGN 261 (359)
Q Consensus 196 f~~~~~~G~~a~~~~~~~~~~----------~~G~~~Y~~~~l~~l~~--~~~--~~~~i~~d~~~~~~~~~~~~~~v~N 261 (359)
+.|+++||+||.+..+...+| ....+=|-+-+-+.|++ ++. .++.++-||+... ......++|-|
T Consensus 615 MNNYFGIGlDAKISLDFhnKReEhPeKcrSR~kn~MWYGvLGtKeLLhrTyrnLEQRV~LECDG~~i~-lP~LQGIviLN 693 (1099)
T KOG1170|consen 615 MNNYFGIGLDAKISLDFHNKREEHPEKCRSRSKNFMWYGVLGTKELLHRTYRNLEQRVKLECDGVPID-LPSLQGIVILN 693 (1099)
T ss_pred hccccccccceeEeeecccccccChHHHhHHhhhcchhhhcchHHHHHHHHHhHHHHeeeecCCcccC-CcccceeEEEe
Confidence 357889999998876543221 11223343334455543 222 3678888987754 45677899999
Q ss_pred cccccCCceeCCCC---------CCCCCeeEEEEEecCCHHHHHHHHHhhhCCeeeeeCCEEEEEEeEEEEEeccCCCCc
Q 018199 262 AKYFGGGMKITPNA---------DPRNGYFEVVILQDFKWYDFILKLLKLYNGTHLSVKNVTSRRAHSIEVEDISSGDSI 332 (359)
Q Consensus 262 ~~~~ggg~~i~P~a---------~~~DG~ldv~~v~~~~~~~ll~~l~~~~~G~~~~~~~v~~~~~~~i~i~~~~~~~~~ 332 (359)
.++|.||.+|+-.. +.||+.|+||.+=..--+. +.++.+ ..+-..-+++.+.|... +++++
T Consensus 694 IpSyaGGtNFWGsnk~dd~f~apSfDDriLEVVAvFGsvqMA----~SRvI~-----LqhHRIAQCr~V~I~Il-GDE~I 763 (1099)
T KOG1170|consen 694 IPSYAGGTNFWGSNKDDDEFTAPSFDDRILEVVAVFGSVQMA----TSRVIR-----LQHHRIAQCRHVRIVIL-GDEGI 763 (1099)
T ss_pred cccccCcccccCCCCCCCcccCCCcccceeEEeeeehhHHHH----HHHHHH-----hhhhhhhhceEEEEEEe-cCCCC
Confidence 99999999887543 4789999999885421111 112221 11123457777777754 58899
Q ss_pred eEEecCCCCCccceEEEEe
Q 018199 333 YVQSDGEHLGFLPRKLCVL 351 (359)
Q Consensus 333 ~~~iDGE~~~~~p~~i~v~ 351 (359)
++|+|||..-..|--|+++
T Consensus 764 PVQvDGEaWlQPPG~irIv 782 (1099)
T KOG1170|consen 764 PVQVDGEAWLQPPGIIRIV 782 (1099)
T ss_pred ceeecCccccCCCceeeee
Confidence 9999999988777555554
No 24
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=99.35 E-value=1.1e-10 Score=107.03 Aligned_cols=244 Identities=14% Similarity=0.146 Sum_probs=139.3
Q ss_pred CcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEE--ecCCchHHHHHHH-HHHHcCCCEEEEEeCCchHHHHHh
Q 018199 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICES--LTSGPSHAIDITR-EAIKEGADAVIAVGGDGTLHEVVN 123 (359)
Q Consensus 47 ~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~--~t~~~~~a~~~~~-~~~~~~~d~ivv~GGDGTv~evln 123 (359)
+|+.|+.|+. +..+.+.++++...|++. ++++.+. .+...+++...+. .....++|.||++|||||+.++++
T Consensus 1 m~v~iv~~~~--k~~~~~~~~~I~~~L~~~---g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~iGGDGTlL~a~~ 75 (277)
T PRK03708 1 MRFGIVARRD--KEEALKLAYRVYDFLKVS---GYEVVVDSETYEHLPEFSEEDVLPLEEMDVDFIIAIGGDGTILRIEH 75 (277)
T ss_pred CEEEEEecCC--CHHHHHHHHHHHHHHHHC---CCEEEEecchhhhcCcccccccccccccCCCEEEEEeCcHHHHHHHH
Confidence 3688999985 355666777888777764 2333332 2222222211111 222346899999999999999999
Q ss_pred HhHhCCccccccccccCCcceEEEeeCcChhhhhhhcCCCCCHHHHHHHHHcCCee--eEeEEEEEccCCCceEEEEEec
Q 018199 124 GFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRNDPYEAVERIAKGVRS--WVDVGVINGETGEPHYFINVAD 201 (359)
Q Consensus 124 gl~~~~~~~~~~~~~~~~~~~lgiiP~GTgN~~Ar~lg~~~~~~~al~~i~~g~~~--~iD~~~v~~~~~~~~~f~~~~~ 201 (359)
+. ..++|+..||.|+. +|...+. +.+..++++.+.+|+.. +.-+.++.-.+....+.+|-+.
T Consensus 76 -~~-------------~~~~pi~gIn~G~l-GFl~~~~-~~~~~~~l~~i~~g~~~~~~r~~l~~~~~~~~~~~alNdv~ 139 (277)
T PRK03708 76 -KT-------------KKDIPILGINMGTL-GFLTEVE-PEETFFALSRLLEGDYFIDERIKLRVYINGENVPDALNEVV 139 (277)
T ss_pred -hc-------------CCCCeEEEEeCCCC-CccccCC-HHHHHHHHHHHHcCCceEEEeEEEEEEECCeEeEEEeeeEE
Confidence 64 24689999999998 8888887 56788999999999753 3333333321111124455322
Q ss_pred cccchhhcccccccccccChhhHHHHHHHHhcCCCCcEEEEEcCeeEEEecceEEEEEeCc--c----cccCCceeCCCC
Q 018199 202 LHLSAKAGYYASRYKRFGNLCYVIGALQAFMGHRNQDLRVKVNEGEWEEYSQVTALCIGNA--K----YFGGGMKITPNA 275 (359)
Q Consensus 202 ~G~~a~~~~~~~~~~~~G~~~Y~~~~l~~l~~~~~~~~~i~~d~~~~~~~~~~~~~~v~N~--~----~~ggg~~i~P~a 275 (359)
+ .. +.. .+-..+++.+|++.+..+ ..-.+.|+.. + ...||--+.|
T Consensus 140 v--------~~------~~~------------~~~~~~~v~idg~~~~~~-~gDGvIvsTptGSTAY~lSaGGpIv~p-- 190 (277)
T PRK03708 140 I--------LT------GIP------------GKIIHLKYYVDGELADEV-RADGLIISTPTGSTAYAMSAGGPFVDP-- 190 (277)
T ss_pred E--------ec------CCC------------CcEEEEEEEECCEEEEEE-ecCEEEEeCCCchHHHHhhCCCcccCC--
Confidence 1 00 000 112457888898876543 2334555542 1 1123433444
Q ss_pred CCCCCeeEEEEEecCCHHHHHHHHHhhhCCeeeeeCCEEEEEEeEEEEEeccCCCCceEEecCCCCC---c-cceEEEEe
Q 018199 276 DPRNGYFEVVILQDFKWYDFILKLLKLYNGTHLSVKNVTSRRAHSIEVEDISSGDSIYVQSDGEHLG---F-LPRKLCVL 351 (359)
Q Consensus 276 ~~~DG~ldv~~v~~~~~~~ll~~l~~~~~G~~~~~~~v~~~~~~~i~i~~~~~~~~~~~~iDGE~~~---~-~p~~i~v~ 351 (359)
.++++++.+.....+ ..+. +-.-...+++++..+...+..+.+||+... . ..+.++..
T Consensus 191 -----~~~~~~vtPi~p~~l--------~~rp-----lV~~~~~~i~l~~~~~~~~~~l~~DG~~~~~l~~~~~v~i~~s 252 (277)
T PRK03708 191 -----RLDAILIAPLCPFKL--------SSRP-----MVVPSSSRIDVKLLRTGREIILVIDGQYYEELPPDTEITIKKS 252 (277)
T ss_pred -----CCCeEEEEecccccC--------CCCC-----EEECCCCEEEEEEecCCCcEEEEECCCeeEecCCCCEEEEEEC
Confidence 346666666544321 1111 111122244444322234677999999643 2 35889988
Q ss_pred CCeeEEe
Q 018199 352 PAAIEMI 358 (359)
Q Consensus 352 p~~l~vl 358 (359)
++.++++
T Consensus 253 ~~~~~~~ 259 (277)
T PRK03708 253 PRKTKFV 259 (277)
T ss_pred CCeEEEE
Confidence 8888875
No 25
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=99.22 E-value=2.5e-09 Score=99.58 Aligned_cols=116 Identities=14% Similarity=0.214 Sum_probs=76.0
Q ss_pred CCCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEecCCchHHHHHHHHHHHcCCCEEEEEeCCchHHHHHhH
Q 018199 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNG 124 (359)
Q Consensus 45 ~~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTv~evlng 124 (359)
+++++++|+|| |+..+.+.++++...|++. ++++.+..+....+......+.....+|.|+++|||||++++++.
T Consensus 2 ~~kkv~lI~n~--~~~~~~~~~~~i~~~L~~~---g~~v~v~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDGT~l~~~~~ 76 (305)
T PRK02645 2 QLKQVIIAYKA--GSSQAKEAAERCAKQLEAR---GCKVLMGPSGPKDNPYPVFLASASELIDLAIVLGGDGTVLAAARH 76 (305)
T ss_pred CcCEEEEEEeC--CCHHHHHHHHHHHHHHHHC---CCEEEEecCchhhccccchhhccccCcCEEEEECCcHHHHHHHHH
Confidence 57899999999 4455556666776667543 344444333332222111122223468999999999999999998
Q ss_pred hHhCCccccccccccCCcceEEEeeC-cChhhhhhhcCCCCCHHHHHHHHHcCCee
Q 018199 125 FFSAGKLVTNHNRESAHSTALGLIPL-GTGSDFARTFGWRNDPYEAVERIAKGVRS 179 (359)
Q Consensus 125 l~~~~~~~~~~~~~~~~~~~lgiiP~-GTgN~~Ar~lg~~~~~~~al~~i~~g~~~ 179 (359)
+. ...+|+..|.. |+-.-++..-....+ .++++.+.+|+..
T Consensus 77 ~~-------------~~~~pv~gin~~G~lGFL~~~~~~~~~-~~~l~~i~~g~~~ 118 (305)
T PRK02645 77 LA-------------PHDIPILSVNVGGHLGFLTHPRDLLQD-ESVWDRLQEDRYA 118 (305)
T ss_pred hc-------------cCCCCEEEEecCCcceEecCchhhcch-HHHHHHHHcCCce
Confidence 84 34689999998 886666643211223 6899999999754
No 26
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=99.12 E-value=8.5e-09 Score=95.22 Aligned_cols=247 Identities=14% Similarity=0.149 Sum_probs=134.2
Q ss_pred CCCCCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEecCCchHHHH-----H-HHHHHHcCCCEEEEEeCCc
Q 018199 43 SSRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAID-----I-TREAIKEGADAVIAVGGDG 116 (359)
Q Consensus 43 ~~~~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t~~~~~a~~-----~-~~~~~~~~~d~ivv~GGDG 116 (359)
+..++++.++.||.. -.+.+..+++...|.+. ++++.+. +...+... . ..+...++.|.++++||||
T Consensus 2 ~~~~~~i~iv~~~~~--~~~~~~~~~i~~~l~~~---g~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~vi~lGGDG 74 (292)
T PRK03378 2 NNHFKCIGIVGHPRH--PTALTTHEMLYHWLTSK---GYEVIVE--QQIAHELQLKNVKTGTLAEIGQQADLAIVVGGDG 74 (292)
T ss_pred CccCCEEEEEEeCCC--HHHHHHHHHHHHHHHHC---CCEEEEe--cchhhhcCcccccccchhhcCCCCCEEEEECCcH
Confidence 345788999999964 34445566666666653 2333221 11100000 0 0011224689999999999
Q ss_pred hHHHHHhHhHhCCccccccccccCCcceEEEeeCcChh-hhhhhcCCCCCHHHHHHHHHcCCee--eEeEEEEE--ccCC
Q 018199 117 TLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGS-DFARTFGWRNDPYEAVERIAKGVRS--WVDVGVIN--GETG 191 (359)
Q Consensus 117 Tv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~GTgN-~~Ar~lg~~~~~~~al~~i~~g~~~--~iD~~~v~--~~~~ 191 (359)
|+..+++.+.. .. +.+||.++|| +|...+. +.++.++++.+++|... +.-+..+. ..+.
T Consensus 75 T~L~aa~~~~~-------------~~--~Pilgin~G~lGFl~~~~-~~~~~~~l~~i~~g~~~i~~r~~L~~~v~~~~~ 138 (292)
T PRK03378 75 NMLGAARVLAR-------------YD--IKVIGINRGNLGFLTDLD-PDNALQQLSDVLEGHYISEKRFLLEAQVCRHGQ 138 (292)
T ss_pred HHHHHHHHhcC-------------CC--CeEEEEECCCCCcccccC-HHHHHHHHHHHHcCCceEEEEEEEEEEEEeCCc
Confidence 99999987631 23 4577777888 7877776 56788999999998753 11122222 1111
Q ss_pred C--ceEEEEEeccccchhhcccccccccccChhhHHHHHHHHhcCCCCcEEEEEcCeeEEEe-cceEEEEEeCc-ccc--
Q 018199 192 E--PHYFINVADLHLSAKAGYYASRYKRFGNLCYVIGALQAFMGHRNQDLRVKVNEGEWEEY-SQVTALCIGNA-KYF-- 265 (359)
Q Consensus 192 ~--~~~f~~~~~~G~~a~~~~~~~~~~~~G~~~Y~~~~l~~l~~~~~~~~~i~~d~~~~~~~-~~~~~~~v~N~-~~~-- 265 (359)
. ..+.+|-+.+ . .|..++ -..+++.+|++....+ .....+...++ ..|
T Consensus 139 ~~~~~~aLNdvvi--------~------~~~~~~------------~i~~~v~idg~~~~~~~~DGlIvsTptGSTAYsl 192 (292)
T PRK03378 139 QKRISTAINEVVL--------H------PGKVAH------------MIEFEVYIDDNFAFSQRSDGLIISTPTGSTAYSL 192 (292)
T ss_pred eEEeEEEEEEEEE--------c------cCCCcc------------EEEEEEEECCEEEEEEEccEEEEeCCCchHHhHh
Confidence 1 1234443211 0 122222 1267888898754432 23344444444 344
Q ss_pred -cCCceeCCCCCCCCCeeEEEEEecCCHHHHHHHHHhhhCCeeeeeCCEEEEEEeEEEEEeccCCCCceEEecCCCC-C-
Q 018199 266 -GGGMKITPNADPRNGYFEVVILQDFKWYDFILKLLKLYNGTHLSVKNVTSRRAHSIEVEDISSGDSIYVQSDGEHL-G- 342 (359)
Q Consensus 266 -ggg~~i~P~a~~~DG~ldv~~v~~~~~~~ll~~l~~~~~G~~~~~~~v~~~~~~~i~i~~~~~~~~~~~~iDGE~~-~- 342 (359)
+||..+.|.. +++++.+..... +.-+. +-.-...+++++..+..++..+.+||... .
T Consensus 193 SAGGPii~P~~-------~~~~itPI~Phs--------l~~rp-----lVl~~~~~i~i~~~~~~~~~~l~~DG~~~~~l 252 (292)
T PRK03378 193 SAGGPILTPSL-------DAITLVPMFPHT--------LSARP-----LVIDSSSTIRLKFSPNRSDLEISCDSQIALPI 252 (292)
T ss_pred hcCCceeCCCC-------CeEEEEeccccc--------CCCCC-----EEECCCCEEEEEEccCCCcEEEEECCceEEEc
Confidence 6777777765 455555543311 11121 11112234444432223467789999853 2
Q ss_pred -c-cceEEEEeCCeeEEe
Q 018199 343 -F-LPRKLCVLPAAIEMI 358 (359)
Q Consensus 343 -~-~p~~i~v~p~~l~vl 358 (359)
. ..+.|+..+..++++
T Consensus 253 ~~gd~i~i~~s~~~~~lv 270 (292)
T PRK03378 253 QPGEEVLIRRSDYHLNLI 270 (292)
T ss_pred CCCcEEEEEECCCEEEEE
Confidence 2 258888888888775
No 27
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.88 E-value=6.6e-07 Score=81.38 Aligned_cols=225 Identities=18% Similarity=0.160 Sum_probs=128.4
Q ss_pred CcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEecCCchHHHHHHHHHHHcCCCEEEEEeCCchHHHHHhHhH
Q 018199 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFF 126 (359)
Q Consensus 47 ~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTv~evlngl~ 126 (359)
+++.|+.+|.+ .+.++++...|.+.. ..+ ....... ....+.|.|+++|||||+-.++..+
T Consensus 1 m~~~~~~~~~~-----~~~~~~~~~~l~~~~---~~~--~~~~~~~--------~~~~~~d~vi~iGGDGT~L~a~~~~- 61 (256)
T PRK14075 1 MKLGIFYREEK-----EKEAKFLKEKISKEH---EVV--EFCEASA--------SGKVTADLIIVVGGDGTVLKAAKKV- 61 (256)
T ss_pred CEEEEEeCccH-----HHHHHHHHHHHHHcC---Cee--Eeecccc--------cccCCCCEEEEECCcHHHHHHHHHc-
Confidence 35677777763 455666666666532 111 1111111 0124679999999999999888753
Q ss_pred hCCccccccccccCCcceEEEeeCcChhhhhhhcCCCCCHHHHHHHHHcCCee--eEeEEEEEccCCCceEEEEEecccc
Q 018199 127 SAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRNDPYEAVERIAKGVRS--WVDVGVINGETGEPHYFINVADLHL 204 (359)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~lgiiP~GTgN~~Ar~lg~~~~~~~al~~i~~g~~~--~iD~~~v~~~~~~~~~f~~~~~~G~ 204 (359)
.+|+--|..|+-.-++. +. +.+..++++.+.+|+.. +.-+.++....+ ..+.+|-+.+.
T Consensus 62 ---------------~~Pilgin~G~lGfl~~-~~-~~~~~~~l~~~~~g~~~~~~r~~l~~~~~~~-~~~alNev~i~- 122 (256)
T PRK14075 62 ---------------GTPLVGFKAGRLGFLSS-YT-LEEIDRFLEDLKNWNFREEKRWFLKIESELG-NHLALNDVTLE- 122 (256)
T ss_pred ---------------CCCEEEEeCCCCccccc-cC-HHHHHHHHHHHHcCCcEEEEeeEEEEEEcCC-cEEEEEEEEEe-
Confidence 36766688887332221 11 12356788889998754 333334432211 23455533210
Q ss_pred chhhcccccccccccChhhHHHHHHHHhcCCCCcEEEEEcCeeEEEecceEEEEEeCcc------cccCCceeCCCCCCC
Q 018199 205 SAKAGYYASRYKRFGNLCYVIGALQAFMGHRNQDLRVKVNEGEWEEYSQVTALCIGNAK------YFGGGMKITPNADPR 278 (359)
Q Consensus 205 ~a~~~~~~~~~~~~G~~~Y~~~~l~~l~~~~~~~~~i~~d~~~~~~~~~~~~~~v~N~~------~~ggg~~i~P~a~~~ 278 (359)
. +. ..+...+++.+|++....+ ..-.+.|+... ...||..+.|+.
T Consensus 123 -------~------~~------------~~~~~~~~v~i~~~~~~~~-~~DG~ivsTptGSTaY~lSaGGpiv~p~~--- 173 (256)
T PRK14075 123 -------R------DP------------SQKMVEIEVSFEDHSSMWF-FADGVVISTPTGSTAYSLSLGGPIILPNC--- 173 (256)
T ss_pred -------c------CC------------CCcEEEEEEEECCEEEEEE-ecCEEEEeCCCchHHHHhhCCCceeCCCC---
Confidence 0 00 0122457788888655432 23345555421 223455555554
Q ss_pred CCeeEEEEEecCCHHHHHHHHHhhhCCeeeeeCCEEEEEEeEEEEEeccCCCCceEEecCCCCCcc-ceEEEEeCCeeEE
Q 018199 279 NGYFEVVILQDFKWYDFILKLLKLYNGTHLSVKNVTSRRAHSIEVEDISSGDSIYVQSDGEHLGFL-PRKLCVLPAAIEM 357 (359)
Q Consensus 279 DG~ldv~~v~~~~~~~ll~~l~~~~~G~~~~~~~v~~~~~~~i~i~~~~~~~~~~~~iDGE~~~~~-p~~i~v~p~~l~v 357 (359)
++..+-+. .+..+.+++.-.| +.++++|+. +++..+++|||..+.. +++|++.|+++++
T Consensus 174 ----~~l~ItPI--------~Ph~L~~rpiVlp-----~~~~I~I~~---~~~~~l~iDGe~~~~~~~I~I~~s~~~l~l 233 (256)
T PRK14075 174 ----EVFEITPI--------APQFLATRSIVIP-----SNEKVTVES---QRDINLIVDGVLVGKTNRITVKKSRRYVRI 233 (256)
T ss_pred ----CeEEeeee--------ehhhcCCCceEcC-----CCCEEEEEE---CCceEEEECCCCcCCCcEEEEEECCCEEEE
Confidence 33333332 2233566765544 666777775 3578899999998876 8999999999998
Q ss_pred e
Q 018199 358 I 358 (359)
Q Consensus 358 l 358 (359)
+
T Consensus 234 i 234 (256)
T PRK14075 234 L 234 (256)
T ss_pred E
Confidence 6
No 28
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.85 E-value=5.9e-07 Score=83.26 Aligned_cols=248 Identities=16% Similarity=0.172 Sum_probs=132.9
Q ss_pred CCCCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEecCC---chHHHHHH-HHHHHcCCCEEEEEeCCchHH
Q 018199 44 SRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSG---PSHAIDIT-REAIKEGADAVIAVGGDGTLH 119 (359)
Q Consensus 44 ~~~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t~~---~~~a~~~~-~~~~~~~~d~ivv~GGDGTv~ 119 (359)
+.++++.|++||.. ..+.+.++++...|++. ++++.+..+.. +.++.... .+....++|.|+++|||||+.
T Consensus 2 ~~~~~v~iv~~~~k--~~a~e~~~~i~~~L~~~---giev~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDGt~l 76 (295)
T PRK01231 2 PSFRNIGLIGRLGS--SSVVETLRRLKDFLLDR---GLEVILDEETAEVLPGHGLQTVSRKLLGEVCDLVIVVGGDGSLL 76 (295)
T ss_pred CCCCEEEEEecCCC--HHHHHHHHHHHHHHHHC---CCEEEEecchhhhcCcccccccchhhcccCCCEEEEEeCcHHHH
Confidence 34778999999875 34555667777767653 33443322211 11111111 122234689999999999999
Q ss_pred HHHhHhHhCCccccccccccCCcceEEEeeCcChhhhhhhcCCCCCHHHHHHHHHcCCe--eeEeEEEEEcc-CCC---c
Q 018199 120 EVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRNDPYEAVERIAKGVR--SWVDVGVINGE-TGE---P 193 (359)
Q Consensus 120 evlngl~~~~~~~~~~~~~~~~~~~lgiiP~GTgN~~Ar~lg~~~~~~~al~~i~~g~~--~~iD~~~v~~~-~~~---~ 193 (359)
++++.+. ..++|+.-|..|+-+-+ ..+. +.+..++++.+++|.. .+.-+.++.-. +++ .
T Consensus 77 ~~~~~~~-------------~~~~Pvlgin~G~lGFl-~~~~-~~~~~~~l~~~~~g~~~i~~r~~L~~~v~~~~~~~~~ 141 (295)
T PRK01231 77 GAARALA-------------RHNVPVLGINRGRLGFL-TDIR-PDELEFKLAEVLDGHYQEEERFLLEAEVRRGGEVIGQ 141 (295)
T ss_pred HHHHHhc-------------CCCCCEEEEeCCccccc-ccCC-HHHHHHHHHHHHcCCceEEEEEEEEEEEEECCcEEee
Confidence 9998763 34678888999984322 2222 2356788999999864 33333333311 111 1
Q ss_pred eEEEEEeccccchhhcccccccccccChhhHHHHHHHHhcCCCCcEEEEEcCeeEEEecceEEEEEeCcc------cccC
Q 018199 194 HYFINVADLHLSAKAGYYASRYKRFGNLCYVIGALQAFMGHRNQDLRVKVNEGEWEEYSQVTALCIGNAK------YFGG 267 (359)
Q Consensus 194 ~~f~~~~~~G~~a~~~~~~~~~~~~G~~~Y~~~~l~~l~~~~~~~~~i~~d~~~~~~~~~~~~~~v~N~~------~~gg 267 (359)
.+.+|-+.+ .. +. ..+-.++++.+|++.+..+ ..-.+.|+... ...|
T Consensus 142 ~~ALNevvi--------~~------~~------------~~~~~~~~v~id~~~~~~~-~~DGlivsTptGSTAY~lSAG 194 (295)
T PRK01231 142 GDALNDVVL--------HP------GK------------STRMIEFELYIDGQFVCSQ-RSDGLIVSTPTGSTAYALSGG 194 (295)
T ss_pred eeEEEEEEE--------cc------CC------------CCcEEEEEEEECCEEEEEE-EcceEEEeCCCCchhhhhhcC
Confidence 234453211 00 00 0112357888888776543 23345555421 1224
Q ss_pred CceeCCCCCCCCCeeEEEEEecCCHHHHHHHHHhhhCCeeeeeCCEEEEEEeEEEEEecc-CCCCceEEecCCCCC---c
Q 018199 268 GMKITPNADPRNGYFEVVILQDFKWYDFILKLLKLYNGTHLSVKNVTSRRAHSIEVEDIS-SGDSIYVQSDGEHLG---F 343 (359)
Q Consensus 268 g~~i~P~a~~~DG~ldv~~v~~~~~~~ll~~l~~~~~G~~~~~~~v~~~~~~~i~i~~~~-~~~~~~~~iDGE~~~---~ 343 (359)
|--+.|+ ++++++.+..... +.-+. +-.-...+++++... .+.+..+.+||.... .
T Consensus 195 GpIv~p~-------~~~~~itPI~ph~--------l~~rp-----iVl~~~~~I~i~~~~~~~~~~~l~~DG~~~~~l~~ 254 (295)
T PRK01231 195 GPIMHPK-------LDAIVLVPMFPHT--------LSSRP-----IVVDGNSEIKIVISKDNRTYPRVSCDGQNSVTLAP 254 (295)
T ss_pred CceecCC-------CCeEEEEecCCCc--------cCCCC-----EEECCCCEEEEEEccCCCCceEEEeCCCceEecCC
Confidence 4444554 4566666654422 11111 111122344554321 123467899999642 2
Q ss_pred -cceEEEEeCCeeEEe
Q 018199 344 -LPRKLCVLPAAIEMI 358 (359)
Q Consensus 344 -~p~~i~v~p~~l~vl 358 (359)
..+.|+..+..++++
T Consensus 255 g~~i~i~~s~~~~~l~ 270 (295)
T PRK01231 255 GDTVTIRKKPQKLRLI 270 (295)
T ss_pred CCEEEEEECCCeEEEE
Confidence 358888888888775
No 29
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=98.84 E-value=1.3e-08 Score=93.17 Aligned_cols=74 Identities=22% Similarity=0.306 Sum_probs=57.9
Q ss_pred CCchHHHHHHHHHHHcCCCEEEEEeCCchHHHHHhHhHhCCccccccccccCCcceEEEeeCcChhhhhhhcCCCCCHHH
Q 018199 89 SGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRNDPYE 168 (359)
Q Consensus 89 ~~~~~a~~~~~~~~~~~~d~ivv~GGDGTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~GTgN~~Ar~lg~~~~~~~ 168 (359)
++..+....++.+...+.|+|+.+|||||..+|++++ ..++|+--||+||-|...-..--|.+...
T Consensus 84 tTa~DT~~~~r~~~~~gVdlIvfaGGDGTarDVa~av--------------~~~vPvLGipaGvk~~SgvfA~~P~~aa~ 149 (355)
T COG3199 84 TTAEDTINAVRRMVERGVDLIVFAGGDGTARDVAEAV--------------GADVPVLGIPAGVKNYSGVFALSPEDAAR 149 (355)
T ss_pred ccHHHHHHHHHHHHhcCceEEEEeCCCccHHHHHhhc--------------cCCCceEeeccccceeccccccChHHHHH
Confidence 4456677778888888999999999999999999987 35799999999999887644333444455
Q ss_pred HHHHHHcC
Q 018199 169 AVERIAKG 176 (359)
Q Consensus 169 al~~i~~g 176 (359)
.+..++++
T Consensus 150 l~~~~lkg 157 (355)
T COG3199 150 LLGAFLKG 157 (355)
T ss_pred HHHHHhcc
Confidence 56667777
No 30
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.68 E-value=6.7e-06 Score=76.42 Aligned_cols=247 Identities=14% Similarity=0.138 Sum_probs=131.6
Q ss_pred CCCCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEecCCchHHH----HH---------H-HHHHHcCCCEE
Q 018199 44 SRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAI----DI---------T-REAIKEGADAV 109 (359)
Q Consensus 44 ~~~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t~~~~~a~----~~---------~-~~~~~~~~d~i 109 (359)
.+++++.++.||.. ..+.+..+++...|.+. ++++.+... ...... .. . .+...++.|.|
T Consensus 3 ~~~~~I~iv~~~~~--~~~~~~~~~l~~~L~~~---g~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v 76 (306)
T PRK03372 3 TASRRVLLVAHTGR--DEATEAARRVAKQLGDA---GIGVRVLDA-EAVDLGATHPAPDDFRAMEVVDADPDAADGCELV 76 (306)
T ss_pred CCccEEEEEecCCC--HHHHHHHHHHHHHHHHC---CCEEEEeec-hhhhhcccccccccccccccccchhhcccCCCEE
Confidence 45788999999863 34455566676666653 333322111 110000 00 0 01223468999
Q ss_pred EEEeCCchHHHHHhHhHhCCccccccccccCCcceEEEeeCcChhhhhhhcCCCCCHHHHHHHHHcCCee--eEeEEEEE
Q 018199 110 IAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRNDPYEAVERIAKGVRS--WVDVGVIN 187 (359)
Q Consensus 110 vv~GGDGTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~GTgN~~Ar~lg~~~~~~~al~~i~~g~~~--~iD~~~v~ 187 (359)
|+.|||||+-.++..+. ...+|+.-|..|+-.-++..- +.+..++++.+++|... +.-..++.
T Consensus 77 i~lGGDGT~L~aar~~~-------------~~~~PilGIN~G~lGFL~~~~--~~~~~~~l~~i~~g~y~i~~R~~L~~~ 141 (306)
T PRK03372 77 LVLGGDGTILRAAELAR-------------AADVPVLGVNLGHVGFLAEAE--AEDLDEAVERVVDRDYRVEERMTLDVT 141 (306)
T ss_pred EEEcCCHHHHHHHHHhc-------------cCCCcEEEEecCCCceeccCC--HHHHHHHHHHHHcCCceEEEeeeEEEE
Confidence 99999999999998763 346788889999943333211 34567899999998753 22222222
Q ss_pred cc-CCC---ceEEEEEeccccchhhcccccccccccChhhHHHHHHHHhcCCCCcEEEEEcCeeEEEecceEEEEEeCc-
Q 018199 188 GE-TGE---PHYFINVADLHLSAKAGYYASRYKRFGNLCYVIGALQAFMGHRNQDLRVKVNEGEWEEYSQVTALCIGNA- 262 (359)
Q Consensus 188 ~~-~~~---~~~f~~~~~~G~~a~~~~~~~~~~~~G~~~Y~~~~l~~l~~~~~~~~~i~~d~~~~~~~~~~~~~~v~N~- 262 (359)
-. +++ ..+.+|-+.+ .. +.. .+-..+++.+|++.+..+ +.-.+.|+..
T Consensus 142 v~~~g~~~~~~~ALNdvvi--------~r------~~~------------~~~~~~~v~idg~~~~~~-~~DGlIVsTPT 194 (306)
T PRK03372 142 VRVGGEIVWRGWALNEASL--------EK------ADR------------EGMLEVVLEVDGRPVSSF-GCDGVLVSTPT 194 (306)
T ss_pred EEECCEEEeeeeEEEeEEe--------ec------CCC------------CcEEEEEEEECCEEEEEE-ecCEEEEeCCC
Confidence 11 111 1234442211 00 000 012357788998876543 2334555542
Q ss_pred -c----cccCCceeCCCCCCCCCeeEEEEEecCCHHHHHHHHHhhhCCeeeeeCCEEEEEEeEEEEEeccCCCCceEEec
Q 018199 263 -K----YFGGGMKITPNADPRNGYFEVVILQDFKWYDFILKLLKLYNGTHLSVKNVTSRRAHSIEVEDISSGDSIYVQSD 337 (359)
Q Consensus 263 -~----~~ggg~~i~P~a~~~DG~ldv~~v~~~~~~~ll~~l~~~~~G~~~~~~~v~~~~~~~i~i~~~~~~~~~~~~iD 337 (359)
+ ...||--+.|. ++++++.+..... +..+. +-.-...+++|+..+..++..+.+|
T Consensus 195 GSTAYslSAGGPIv~P~-------~~~~~itPI~Ph~--------l~~Rp-----lVv~~~~~I~i~~~~~~~~~~l~~D 254 (306)
T PRK03372 195 GSTAYAFSAGGPVVWPD-------LEALLVVPLNAHA--------LFARP-----LVVSPTSTVAVEILADTSDAVLWCD 254 (306)
T ss_pred chHHHHhhcCCcccCCC-------CCeEEEEeccccc--------CCCCC-----eEECCCCEEEEEEecCCCcEEEEEc
Confidence 1 22345445554 4566666644311 22222 1112233445544322346789999
Q ss_pred CCCCCc----cceEEEEeCCeeEEe
Q 018199 338 GEHLGF----LPRKLCVLPAAIEMI 358 (359)
Q Consensus 338 GE~~~~----~p~~i~v~p~~l~vl 358 (359)
|..... ..+.++..+..++++
T Consensus 255 G~~~~~l~~gd~i~i~~s~~~~~lv 279 (306)
T PRK03372 255 GRRSVDLPPGARVEVRRGATPVRLA 279 (306)
T ss_pred CCeeEecCCCCEEEEEECCCeEEEE
Confidence 996432 358888888888875
No 31
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=98.60 E-value=1.6e-05 Score=73.69 Aligned_cols=247 Identities=15% Similarity=0.128 Sum_probs=128.9
Q ss_pred CCCCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEecCCc-hHHHH---HHHHHHHcCCCEEEEEeCCchHH
Q 018199 44 SRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGP-SHAID---ITREAIKEGADAVIAVGGDGTLH 119 (359)
Q Consensus 44 ~~~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t~~~-~~a~~---~~~~~~~~~~d~ivv~GGDGTv~ 119 (359)
+.++++.++.|+.. ..+.+.++++...|++. ++++.+..+... .++.. ...+...+++|.||++|||||+.
T Consensus 3 ~~~~~v~iv~~~~~--~~~~e~~~~i~~~L~~~---g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDGt~l 77 (291)
T PRK02155 3 SQFKTVALIGRYQT--PGIAEPLESLAAFLAKR---GFEVVFEADTARNIGLTGYPALTPEEIGARADLAVVLGGDGTML 77 (291)
T ss_pred CcCCEEEEEecCCC--HHHHHHHHHHHHHHHHC---CCEEEEecchhhhcCcccccccChhHhccCCCEEEEECCcHHHH
Confidence 34678999999864 34455566666666543 333322211110 00000 11122234689999999999999
Q ss_pred HHHhHhHhCCccccccccccCCcceEEEeeCcChhhhhhhcCCCCCHHHHHHHHHcCCee--eEeEEEEEcc-CCC---c
Q 018199 120 EVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRNDPYEAVERIAKGVRS--WVDVGVINGE-TGE---P 193 (359)
Q Consensus 120 evlngl~~~~~~~~~~~~~~~~~~~lgiiP~GTgN~~Ar~lg~~~~~~~al~~i~~g~~~--~iD~~~v~~~-~~~---~ 193 (359)
++++.+. ..++|+--|..|+-.-++ ... +.+..++++.+++|..+ ..-+.++.-. +++ .
T Consensus 78 ~~~~~~~-------------~~~~pilGIn~G~lGFL~-~~~-~~~~~~~l~~~~~g~~~i~~r~~L~~~v~~~~~~~~~ 142 (291)
T PRK02155 78 GIGRQLA-------------PYGVPLIGINHGRLGFIT-DIP-LDDMQETLPPMLAGNYEEEERMLLEARVVRDGEPIFH 142 (291)
T ss_pred HHHHHhc-------------CCCCCEEEEcCCCccccc-cCC-HHHHHHHHHHHHcCCceEEEeEEEEEEEEECCeEEEe
Confidence 9999874 245777778999844333 111 13467789999998753 2222232210 111 1
Q ss_pred eEEEEEeccccchhhcccccccccccChhhHHHHHHHHhcCCCCcEEEEEcCeeEEEecceEEEEEeCc--c----cccC
Q 018199 194 HYFINVADLHLSAKAGYYASRYKRFGNLCYVIGALQAFMGHRNQDLRVKVNEGEWEEYSQVTALCIGNA--K----YFGG 267 (359)
Q Consensus 194 ~~f~~~~~~G~~a~~~~~~~~~~~~G~~~Y~~~~l~~l~~~~~~~~~i~~d~~~~~~~~~~~~~~v~N~--~----~~gg 267 (359)
.+.+|-+.+ .. +. ..+-..+++.+|++.+..+ +.-.+.|+.. + ...|
T Consensus 143 ~~AlNev~v--------~~------~~------------~~~~~~~~v~i~~~~~~~~-~gDGlIVsTPtGSTAYslSaG 195 (291)
T PRK02155 143 ALAFNDVVV--------NR------SG------------FSGMVELRVSVDGRFMYNQ-RSDGLIVATPTGSTAYALSAG 195 (291)
T ss_pred eeeeeheee--------cc------CC------------CCceEEEEEEECCEEEEEE-ecCeEEEECCCchhhhhhhcC
Confidence 123331110 00 00 0122457888998776543 3334555542 1 1123
Q ss_pred CceeCCCCCCCCCeeEEEEEecCCHHHHHHHHHhhhCCeeeeeCCEEEEEEeEEEEEeccCCCCceEEecCCCCCc----
Q 018199 268 GMKITPNADPRNGYFEVVILQDFKWYDFILKLLKLYNGTHLSVKNVTSRRAHSIEVEDISSGDSIYVQSDGEHLGF---- 343 (359)
Q Consensus 268 g~~i~P~a~~~DG~ldv~~v~~~~~~~ll~~l~~~~~G~~~~~~~v~~~~~~~i~i~~~~~~~~~~~~iDGE~~~~---- 343 (359)
|--+.| .++++++.+.....+ .-+. +-.-....++++..+ ..+..+.+||+....
T Consensus 196 GPIv~p-------~~~~~~ltPI~p~~l--------~~rp-----iVl~~~~~i~i~~~~-~~~~~l~~DG~~~~~l~~~ 254 (291)
T PRK02155 196 GPILHP-------QLPGWVLVPIAPHTL--------SNRP-----IVLPDDSEVAIQIVG-GRDVSVNFDMQSLTSLELG 254 (291)
T ss_pred CcccCC-------CCCeEEEEecCcCcc--------CCCC-----EEECCCCEEEEEEcC-CCcEEEEEcCCcceeCCCC
Confidence 433444 346666666443221 1111 111123345555432 346789999987532
Q ss_pred cceEEEEeCCeeEEe
Q 018199 344 LPRKLCVLPAAIEMI 358 (359)
Q Consensus 344 ~p~~i~v~p~~l~vl 358 (359)
..+.++.-+..++++
T Consensus 255 d~i~i~~s~~~~~~~ 269 (291)
T PRK02155 255 DRIEVRRSPHTVRFL 269 (291)
T ss_pred CEEEEEECCCeEEEE
Confidence 247888888777764
No 32
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.54 E-value=2.5e-05 Score=71.10 Aligned_cols=234 Identities=12% Similarity=0.142 Sum_probs=123.9
Q ss_pred CCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEecCCchHHHHHHHHHHHcCCCEEEEEeCCchHHHHHhHh
Q 018199 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGF 125 (359)
Q Consensus 46 ~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTv~evlngl 125 (359)
++++.++.|+.. .+.+..+++...|++. ++++. .. .++.|.+++.|||||+-.+++.+
T Consensus 2 ~~~i~iv~~~~~---~a~~~~~~l~~~l~~~---g~~~~--~~--------------~~~~D~vi~lGGDGT~L~a~~~~ 59 (264)
T PRK03501 2 RRNLFFFYKRDK---ELVEKVKPLKKIAEEY---GFTVV--DH--------------PKNANIIVSIGGDGTFLQAVRKT 59 (264)
T ss_pred CcEEEEEECCCH---HHHHHHHHHHHHHHHC---CCEEE--cC--------------CCCccEEEEECCcHHHHHHHHHh
Confidence 457888888764 4455566666666654 22221 11 13479999999999999998875
Q ss_pred HhCCccccccccccCCcceEEEeeC-cChhhhhhhcCCCCCHHHHHHHHHcCCee--eEeEEEEEccCCCceEEEEEecc
Q 018199 126 FSAGKLVTNHNRESAHSTALGLIPL-GTGSDFARTFGWRNDPYEAVERIAKGVRS--WVDVGVINGETGEPHYFINVADL 202 (359)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~lgiiP~-GTgN~~Ar~lg~~~~~~~al~~i~~g~~~--~iD~~~v~~~~~~~~~f~~~~~~ 202 (359)
.. ...+|+--|.. |+-.-++. .. +.+..++++.+.+|+.. +.-+.++.-.+....+.+|-+.+
T Consensus 60 ~~------------~~~~pilgIn~~G~lGFL~~-~~-~~~~~~~l~~i~~g~~~~~~r~~l~~~v~~~~~~~alNevvi 125 (264)
T PRK03501 60 GF------------REDCLYAGISTKDQLGFYCD-FH-IDDLDKMIQAITKEEIEVRKYPTIEVTVDGSTSFYCLNEFSI 125 (264)
T ss_pred cc------------cCCCeEEeEecCCCCeEccc-CC-HHHHHHHHHHHHcCCcEEEEeeeEEEEECCccceEEEEEEEE
Confidence 31 12567656777 87332221 11 23567888999998753 33333443211112344453221
Q ss_pred ccchhhcccccccccccChhhHHHHHHHHhcCCCCcEEEEEcCeeEEEecceEEEEEeCc--c----cccCCceeCCCCC
Q 018199 203 HLSAKAGYYASRYKRFGNLCYVIGALQAFMGHRNQDLRVKVNEGEWEEYSQVTALCIGNA--K----YFGGGMKITPNAD 276 (359)
Q Consensus 203 G~~a~~~~~~~~~~~~G~~~Y~~~~l~~l~~~~~~~~~i~~d~~~~~~~~~~~~~~v~N~--~----~~ggg~~i~P~a~ 276 (359)
. +. ..+...+++.+|++....+ +.-.+.|+.. + ...||--+.|+.
T Consensus 126 --------~-------~~------------~~~~~~~~v~id~~~~~~~-~~DGlIVsTPtGSTAY~lSAGGPIv~P~~- 176 (264)
T PRK03501 126 --------R-------SS------------IIKTFVIDVYIDDLHFETF-RGDGMVVSTPTGSTAYNKSVRGAVVDPLI- 176 (264)
T ss_pred --------c-------CC------------CCceEEEEEEECCEEeEEE-ecCEEEEeCCCchHHHHhhcCCcccCCCC-
Confidence 0 00 0112357888898766543 3334555542 1 223455555644
Q ss_pred CCCCeeEEEEEecCCHHHHHHHHHhhhCCeeeeeCCEEEEEEeEEEEEeccC-CCCceEEecCCCCCc---cceEEEEeC
Q 018199 277 PRNGYFEVVILQDFKWYDFILKLLKLYNGTHLSVKNVTSRRAHSIEVEDISS-GDSIYVQSDGEHLGF---LPRKLCVLP 352 (359)
Q Consensus 277 ~~DG~ldv~~v~~~~~~~ll~~l~~~~~G~~~~~~~v~~~~~~~i~i~~~~~-~~~~~~~iDGE~~~~---~p~~i~v~p 352 (359)
+++++.+.....+.. .+.+. +. +-.-...+++|+..+. ++...+.+||+.... ..+.++..|
T Consensus 177 ------~~~~itPI~P~~~~~--~~~l~-rp-----iVl~~~~~I~i~~~~~~~~~~~l~~DG~~~~l~~~d~i~I~~s~ 242 (264)
T PRK03501 177 ------PCFQVSELASLNNNT--YRTLG-SP-----FILSHERKLTLKIVQDGNDYPIIGMDNEALSIKHVEKIDIRLSD 242 (264)
T ss_pred ------CeEEEEeccccCccc--cccCC-CC-----EEECCCCEEEEEEecCCCCcEEEEEeCCEEEcCCCCEEEEEECC
Confidence 566666544322110 01111 11 1112233445543221 234668899997433 258888888
Q ss_pred CeeEEe
Q 018199 353 AAIEMI 358 (359)
Q Consensus 353 ~~l~vl 358 (359)
+.++++
T Consensus 243 ~~~~lv 248 (264)
T PRK03501 243 KQIKTV 248 (264)
T ss_pred CEEEEE
Confidence 888875
No 33
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.52 E-value=2.7e-05 Score=72.07 Aligned_cols=239 Identities=14% Similarity=0.152 Sum_probs=125.2
Q ss_pred CcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEecCCchHHH----------HH-HHHHHHcCCCEEEEEeCC
Q 018199 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAI----------DI-TREAIKEGADAVIAVGGD 115 (359)
Q Consensus 47 ~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t~~~~~a~----------~~-~~~~~~~~~d~ivv~GGD 115 (359)
+++.|+.||.. ..+.+..+++...|++. ++++.+.. ....... .. ..+...+.+|.||+.|||
T Consensus 1 m~igii~~~~~--~~~~~~~~~i~~~l~~~---g~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~lGGD 74 (292)
T PRK01911 1 MKIAIFGQTYQ--ESASPYIQELFDELEER---GAEVLIEE-KFLDFLKQDLKFHPSYDTFSDNEELDGSADMVISIGGD 74 (292)
T ss_pred CEEEEEeCCCC--HHHHHHHHHHHHHHHHC---CCEEEEec-chhhhhccccccccccccccchhhcccCCCEEEEECCc
Confidence 35889999853 34445566676667653 33332211 1000000 00 001122468999999999
Q ss_pred chHHHHHhHhHhCCccccccccccCCcceEEEeeCcChhhhhhhcCCC-----CCHHHHHHHHHcCCee--eEeEEEEEc
Q 018199 116 GTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWR-----NDPYEAVERIAKGVRS--WVDVGVING 188 (359)
Q Consensus 116 GTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~GTgN~~Ar~lg~~-----~~~~~al~~i~~g~~~--~iD~~~v~~ 188 (359)
||+-.++..+. ..++|+--|..|+ ||+= .+..++++.+++|+.+ +.-+.++..
T Consensus 75 GT~L~aa~~~~-------------~~~~PilGIN~G~-------lGFLt~~~~~~~~~~l~~i~~g~~~i~~r~~L~~~~ 134 (292)
T PRK01911 75 GTFLRTATYVG-------------NSNIPILGINTGR-------LGFLATVSKEEIEETIDELLNGDYTIEERSLLQLES 134 (292)
T ss_pred HHHHHHHHHhc-------------CCCCCEEEEecCC-------CCcccccCHHHHHHHHHHHHcCCceEEEEeeEEEEE
Confidence 99999998763 2467877789998 5543 3457889999998753 333333332
Q ss_pred cCCC---ceEEEEEeccccchhhcccccccccccChhhHHHHHHHHhcCCCCcEEEEEcCeeEEEecceEEEEEeCcc--
Q 018199 189 ETGE---PHYFINVADLHLSAKAGYYASRYKRFGNLCYVIGALQAFMGHRNQDLRVKVNEGEWEEYSQVTALCIGNAK-- 263 (359)
Q Consensus 189 ~~~~---~~~f~~~~~~G~~a~~~~~~~~~~~~G~~~Y~~~~l~~l~~~~~~~~~i~~d~~~~~~~~~~~~~~v~N~~-- 263 (359)
.++. ..+.+|-+.+. . |.. .+-..+++.+|++....+ +.-.+.|+...
T Consensus 135 ~~~~~~~~~~alNdvvi~--------r------~~~------------~~~i~~~v~idg~~~~~~-~~DGlIVsTPTGS 187 (292)
T PRK01911 135 NPKLFGELNFALNEIAIL--------K------RDT------------SSMITVHTYLNGEYLNSY-WADGLIVATPTGS 187 (292)
T ss_pred cCCcceeeeEEEEEEEEe--------c------CCC------------CcEEEEEEEECCEEEEEE-eeceeEECCCCcH
Confidence 1111 12344432110 0 000 012357788898765443 33345565421
Q ss_pred ----cccCCceeCCCCCCCCCeeEEEEEecCCHHHHHHHHHhhhCCeeeeeCCEEEEEEeEEEEEeccCCCCceEEecCC
Q 018199 264 ----YFGGGMKITPNADPRNGYFEVVILQDFKWYDFILKLLKLYNGTHLSVKNVTSRRAHSIEVEDISSGDSIYVQSDGE 339 (359)
Q Consensus 264 ----~~ggg~~i~P~a~~~DG~ldv~~v~~~~~~~ll~~l~~~~~G~~~~~~~v~~~~~~~i~i~~~~~~~~~~~~iDGE 339 (359)
..+||--+.|. ++++++.+.....+ .-+. +-.=...+++++..+......+.+||.
T Consensus 188 TAYslSAGGPIv~P~-------~~~~~ltPI~Ph~l--------~~Rp-----lVl~~~~~I~i~~~~~~~~~~l~~DG~ 247 (292)
T PRK01911 188 TGYSLSCGGPIIVPD-------AKSFVITPIAPHNL--------NVRP-----LVIPDDTEITLEVESRSDNFLVSLDSR 247 (292)
T ss_pred HHHHhhCCCcccCCC-------CCEEEEEecccCcc--------CCCC-----EEECCCCEEEEEEecCCCceEEEEeCC
Confidence 22345444554 35555555433211 1111 111122234443322234567899999
Q ss_pred CCCc---cceEEEEeCCeeEEe
Q 018199 340 HLGF---LPRKLCVLPAAIEMI 358 (359)
Q Consensus 340 ~~~~---~p~~i~v~p~~l~vl 358 (359)
.... ..++|+..+..++++
T Consensus 248 ~~~l~~gd~v~i~~s~~~~~lv 269 (292)
T PRK01911 248 SETVDNGTELTIKKADFTIKLV 269 (292)
T ss_pred eeecCCCCEEEEEECCCeEEEE
Confidence 7533 258888888888775
No 34
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.52 E-value=3e-05 Score=71.59 Aligned_cols=236 Identities=16% Similarity=0.135 Sum_probs=127.0
Q ss_pred CCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEecCCchHHH--HHHHHHHHcCCCEEEEEeCCchHHHHHh
Q 018199 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAI--DITREAIKEGADAVIAVGGDGTLHEVVN 123 (359)
Q Consensus 46 ~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t~~~~~a~--~~~~~~~~~~~d~ivv~GGDGTv~evln 123 (359)
++++.|+.||. + .+.+.++++...|++. ++++.+... ...... ........+++|.+|+.|||||+-.++.
T Consensus 10 ~~~i~ii~~~~--~-~~~~~~~~i~~~l~~~---g~~~~~~~~-~~~~~~~~~~~~~~~~~~~Dlvi~iGGDGT~L~aa~ 82 (287)
T PRK14077 10 IKKIGLVTRPN--V-SLDKEILKLQKILSIY---KVEILLEKE-SAEILDLPGYGLDELFKISDFLISLGGDGTLISLCR 82 (287)
T ss_pred CCEEEEEeCCc--H-HHHHHHHHHHHHHHHC---CCEEEEecc-hhhhhcccccchhhcccCCCEEEEECCCHHHHHHHH
Confidence 77899999996 3 5556667777777653 233322111 000000 0000111246899999999999999998
Q ss_pred HhHhCCccccccccccCCcceEEEeeCcChhhhhhhcCCC-----CCHHHHHHHHHcCCee--eEeEEEEEc--cCCC--
Q 018199 124 GFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWR-----NDPYEAVERIAKGVRS--WVDVGVING--ETGE-- 192 (359)
Q Consensus 124 gl~~~~~~~~~~~~~~~~~~~lgiiP~GTgN~~Ar~lg~~-----~~~~~al~~i~~g~~~--~iD~~~v~~--~~~~-- 192 (359)
.+. ...+|+--|..|+ ||+= .+..++++.+.+|+.. +.-+.++.- .++.
T Consensus 83 ~~~-------------~~~~PilGIN~G~-------lGFLt~~~~~~~~~~l~~i~~g~y~ie~r~~L~~~v~~~~~~~~ 142 (287)
T PRK14077 83 KAA-------------EYDKFVLGIHAGH-------LGFLTDITVDEAEKFFQAFFQGEFEIEKPYMLSVFLEKKQGKIL 142 (287)
T ss_pred Hhc-------------CCCCcEEEEeCCC-------cccCCcCCHHHHHHHHHHHHcCCCeEEEEEEEEEEEEeCCceEE
Confidence 763 2457777788998 5542 3457789999998642 333333331 1111
Q ss_pred ceEEEEEeccccchhhcccccccccccChhhHHHHHHHHhcCCCCcEEEEEcCeeEEEecceEEEEEeCc--c----ccc
Q 018199 193 PHYFINVADLHLSAKAGYYASRYKRFGNLCYVIGALQAFMGHRNQDLRVKVNEGEWEEYSQVTALCIGNA--K----YFG 266 (359)
Q Consensus 193 ~~~f~~~~~~G~~a~~~~~~~~~~~~G~~~Y~~~~l~~l~~~~~~~~~i~~d~~~~~~~~~~~~~~v~N~--~----~~g 266 (359)
..+.+|-+.+ .. +.. .+-..+++.+|++.+..+ +.-.+.|+.. + ..+
T Consensus 143 ~~~AlNevvi--------~~------~~~------------~~~~~~~v~id~~~~~~~-~~DGlIVSTPTGSTAYslSA 195 (287)
T PRK14077 143 EKLAFNDVVI--------SK------NNQ------------ASMAHIEAFLNEKYFNEY-FGDGVIVATPAGSTAYNMSA 195 (287)
T ss_pred EEEEeeeeee--------cc------CCC------------ccEEEEEEEECCEEEEEE-EcCEEEEeCCCchhHhHhhc
Confidence 1133332211 00 000 112357888898776543 2334555542 1 223
Q ss_pred CCceeCCCCCCCCCeeEEEEEecCCHHHHHHHHHhhhCCeeeeeCCEEEEEEeEEEEEeccCCCCceEEecCCCCC---c
Q 018199 267 GGMKITPNADPRNGYFEVVILQDFKWYDFILKLLKLYNGTHLSVKNVTSRRAHSIEVEDISSGDSIYVQSDGEHLG---F 343 (359)
Q Consensus 267 gg~~i~P~a~~~DG~ldv~~v~~~~~~~ll~~l~~~~~G~~~~~~~v~~~~~~~i~i~~~~~~~~~~~~iDGE~~~---~ 343 (359)
||--+.|.. +++++.+..... +..+.+ -.-...+++|+. .++..+.+||.... .
T Consensus 196 GGPIv~P~~-------~~~~ltPI~Phs--------l~~rpi-----Vl~~~~~I~i~~---~~~~~l~~DG~~~~~l~~ 252 (287)
T PRK14077 196 NGPIIYPLS-------QVFILTPVCSHS--------LTQRPI-----VLPKGFEVEFKT---KSDCILCIDGQDRYKMND 252 (287)
T ss_pred CCcccCCCC-------CeEEEEeccccc--------ccCCCE-----EECCCCEEEEEE---CCCEEEEEcCCeeEecCC
Confidence 454455544 566666544322 111211 111123455554 23678999999752 2
Q ss_pred -cceEEEEeCCeeEEe
Q 018199 344 -LPRKLCVLPAAIEMI 358 (359)
Q Consensus 344 -~p~~i~v~p~~l~vl 358 (359)
..++|+..+..++++
T Consensus 253 ~d~i~I~~s~~~~~lv 268 (287)
T PRK14077 253 FKSIKVGLSDKNVALI 268 (287)
T ss_pred CCEEEEEECCCEEEEE
Confidence 358888888888775
No 35
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.46 E-value=3.7e-05 Score=71.58 Aligned_cols=244 Identities=14% Similarity=0.099 Sum_probs=125.5
Q ss_pred CCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEecCCchHHH--H------------HHHHHHHcCCCEEEE
Q 018199 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAI--D------------ITREAIKEGADAVIA 111 (359)
Q Consensus 46 ~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t~~~~~a~--~------------~~~~~~~~~~d~ivv 111 (359)
|+++.|+.|+.. ..+.+..+++...|.+. ++++.+. ........ . ...+...+..|.+|+
T Consensus 1 m~~igiv~n~~~--~~~~~~~~~l~~~L~~~---g~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~ 74 (305)
T PRK02649 1 MPKAGIIYNDGK--PLAVRTAEELQDKLEAA---GWEVVRA-SSSGGILGYANPDQPVCHTGIDQLVPPGFDSSMKFAIV 74 (305)
T ss_pred CCEEEEEEcCCC--HHHHHHHHHHHHHHHHC---CCEEEEe-cchhhhcCccccccccccccccccChhhcccCcCEEEE
Confidence 567999999853 34455566676666653 3333221 11100000 0 000111235899999
Q ss_pred EeCCchHHHHHhHhHhCCccccccccccCCcceEEEeeCcChhhhhhhcCCCCCHHHHHHHHHcCCee--eEeEEEEEcc
Q 018199 112 VGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRNDPYEAVERIAKGVRS--WVDVGVINGE 189 (359)
Q Consensus 112 ~GGDGTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~GTgN~~Ar~lg~~~~~~~al~~i~~g~~~--~iD~~~v~~~ 189 (359)
.|||||+-.++..+. ..++|+--|..|+-.-++. +. +.+..++++.+++|+.+ +.-+.++.-.
T Consensus 75 iGGDGTlL~aar~~~-------------~~~iPilGIN~G~lGFLt~-~~-~~~~~~~l~~l~~g~y~ie~r~~L~~~v~ 139 (305)
T PRK02649 75 LGGDGTVLSAARQLA-------------PCGIPLLTINTGHLGFLTE-AY-LNQLDEAIDQVLAGQYTIEERTMLTVSVM 139 (305)
T ss_pred EeCcHHHHHHHHHhc-------------CCCCcEEEEeCCCCccccc-CC-HHHHHHHHHHHHcCCcEEEEeeeEEEEEE
Confidence 999999999998763 3467877788998332222 11 23567889999998753 3333333311
Q ss_pred -CCC---ceEEEEEeccccchhhcccccccccccChhhHHHHHHHHhcCCCCcEEEEEcCeeEEEecceEEEEEeCc--c
Q 018199 190 -TGE---PHYFINVADLHLSAKAGYYASRYKRFGNLCYVIGALQAFMGHRNQDLRVKVNEGEWEEYSQVTALCIGNA--K 263 (359)
Q Consensus 190 -~~~---~~~f~~~~~~G~~a~~~~~~~~~~~~G~~~Y~~~~l~~l~~~~~~~~~i~~d~~~~~~~~~~~~~~v~N~--~ 263 (359)
+++ ..+.+|-+.+ . .|.. .+-..+++.+|++....+ +.-.+.|+.. +
T Consensus 140 ~~~~~~~~~~ALNevvi--------~------~~~~------------~~~~~~~v~id~~~~~~~-~~DGlIVsTPTGS 192 (305)
T PRK02649 140 RGDQLRWEALSLNEMVL--------H------REPL------------TSMCHFEIAIGRHAPVDI-AADGVILSTPTGS 192 (305)
T ss_pred ECCcceeeeeeeeeeee--------e------cCCC------------ccEEEEEEEECCEEEEEE-ecCeEEEeCCCcH
Confidence 111 1123332111 0 0000 012346788888765432 2234555542 1
Q ss_pred ----cccCCceeCCCCCCCCCeeEEEEEecCCHHHHHHHHHhhhCCeeeeeCCEEEEEEeEEEEEeccCCCCceEEecCC
Q 018199 264 ----YFGGGMKITPNADPRNGYFEVVILQDFKWYDFILKLLKLYNGTHLSVKNVTSRRAHSIEVEDISSGDSIYVQSDGE 339 (359)
Q Consensus 264 ----~~ggg~~i~P~a~~~DG~ldv~~v~~~~~~~ll~~l~~~~~G~~~~~~~v~~~~~~~i~i~~~~~~~~~~~~iDGE 339 (359)
...||--+.|. ++++++.+.....+ .-+.+ -.-....++++..+ .....+.+||.
T Consensus 193 TAYslSAGGPIv~P~-------~~~~~itPI~Phsl--------~~Rpl-----Vlp~~~~I~i~~~~-~~~~~l~~DG~ 251 (305)
T PRK02649 193 TAYSLSAGGPVITPD-------VPVLQLTPICPHSL--------ASRAL-----VFSDSEPVTVFPAT-PERLVMVVDGN 251 (305)
T ss_pred HHHHhhCCCcccCCC-------CCeEEEEecCcCCC--------CCCCE-----EECCCCEEEEEecC-CCcEEEEEecc
Confidence 12344444553 46666666443221 11211 11112234444322 34677899998
Q ss_pred CCC-c---cceEEEEeCCeeEEe
Q 018199 340 HLG-F---LPRKLCVLPAAIEMI 358 (359)
Q Consensus 340 ~~~-~---~p~~i~v~p~~l~vl 358 (359)
... . ..+.|+..+..++++
T Consensus 252 ~~~~l~~gd~i~I~~s~~~~~lv 274 (305)
T PRK02649 252 AGCYVWPEDRVLIRRSPYPVRFI 274 (305)
T ss_pred eeEecCCCCEEEEEECCCEEEEE
Confidence 743 2 358888888888875
No 36
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.43 E-value=6.7e-05 Score=69.58 Aligned_cols=247 Identities=14% Similarity=0.109 Sum_probs=126.6
Q ss_pred CCCCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEecCCc-hHHH-------HH-HHHHHHcCCCEEEEEeC
Q 018199 44 SRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGP-SHAI-------DI-TREAIKEGADAVIAVGG 114 (359)
Q Consensus 44 ~~~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t~~~-~~a~-------~~-~~~~~~~~~d~ivv~GG 114 (359)
+.++++.|+.||.. ..+.+.++++...|.+. ++++.+...... +... .. -.....+..|.+|+.||
T Consensus 3 ~~~~~i~ii~~~~~--~~~~~~~~~l~~~L~~~---g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~lGG 77 (296)
T PRK04539 3 SPFHNIGIVTRPNT--PDIQDTAHTLITFLKQH---GFTVYLDEVGIKEGCIYTQDTVGCHIVNKTELGQYCDLVAVLGG 77 (296)
T ss_pred CCCCEEEEEecCCC--HHHHHHHHHHHHHHHHC---CCEEEEecccccccchhccccccccccchhhcCcCCCEEEEECC
Confidence 44788999999964 34455566777767653 333332111000 0000 00 00112235899999999
Q ss_pred CchHHHHHhHhHhCCccccccccccCCcceEEEeeCcChhhhhhhcCCCCCHHHHHHHHHcCCee--eEeEEEEEcc-CC
Q 018199 115 DGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRNDPYEAVERIAKGVRS--WVDVGVINGE-TG 191 (359)
Q Consensus 115 DGTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~GTgN~~Ar~lg~~~~~~~al~~i~~g~~~--~iD~~~v~~~-~~ 191 (359)
|||+-.++..+. ...+|+--|..|+-.-++. +. +.+..++++.+++|+.. +.-+.++.-. ++
T Consensus 78 DGT~L~aa~~~~-------------~~~~PilGIN~G~lGFL~~-~~-~~~~~~~l~~i~~g~~~~~~r~~l~~~v~~~~ 142 (296)
T PRK04539 78 DGTFLSVAREIA-------------PRAVPIIGINQGHLGFLTQ-IP-REYMTDKLLPVLEGKYLAEERILIEAALIREG 142 (296)
T ss_pred cHHHHHHHHHhc-------------ccCCCEEEEecCCCeEeec-cC-HHHHHHHHHHHHcCCceEEEeeeEEEEEEECC
Confidence 999999998763 2467877789998222221 10 13457788899988643 2222222210 01
Q ss_pred C---ceEEEEEeccccchhhcccccccccccChhhHHHHHHHHhcCCCCcEEEEEcCeeEEEecceEEEEEeCc--c---
Q 018199 192 E---PHYFINVADLHLSAKAGYYASRYKRFGNLCYVIGALQAFMGHRNQDLRVKVNEGEWEEYSQVTALCIGNA--K--- 263 (359)
Q Consensus 192 ~---~~~f~~~~~~G~~a~~~~~~~~~~~~G~~~Y~~~~l~~l~~~~~~~~~i~~d~~~~~~~~~~~~~~v~N~--~--- 263 (359)
. ..+.+|-+ .... +. ..+-..+++.+|++....+ +.-.+.|+.. +
T Consensus 143 ~~~~~~~ALNdv--------vi~~------~~------------~~~~~~~~v~id~~~~~~~-~~DGlIVsTPTGSTAY 195 (296)
T PRK04539 143 KTAERALALNDA--------VLSR------GG------------AGQMIEFEVFVNREFVYTQ-RSDGLIVSTPTGSTAY 195 (296)
T ss_pred eeeeeeeeehhh--------hhcc------CC------------cCceEEEEEEECCEEEEEE-ecCeEEEECCCcHHHH
Confidence 0 01222211 0000 00 0122357788898776543 2334555542 1
Q ss_pred -cccCCceeCCCCCCCCCeeEEEEEecCCHHHHHHHHHhhhCCeeeeeCCEEEEEEeEEEEEeccCCCCceEEecCCCCC
Q 018199 264 -YFGGGMKITPNADPRNGYFEVVILQDFKWYDFILKLLKLYNGTHLSVKNVTSRRAHSIEVEDISSGDSIYVQSDGEHLG 342 (359)
Q Consensus 264 -~~ggg~~i~P~a~~~DG~ldv~~v~~~~~~~ll~~l~~~~~G~~~~~~~v~~~~~~~i~i~~~~~~~~~~~~iDGE~~~ 342 (359)
..+||--+.|+ ++++++.+..... +..+. +..-...+++|+... ..+..+.+||....
T Consensus 196 slSAGGPIv~P~-------~~~~~itPI~Phs--------l~~rp-----lVl~~~~~i~i~~~~-~~~~~l~~DG~~~~ 254 (296)
T PRK04539 196 SLAAGGPIMQAG-------LHAFTLVPICPQS--------MTNRP-----IAIPDTSEIEILVTQ-GGDARVHFDGQTHI 254 (296)
T ss_pred HhhCCCceeCCC-------CCeEEEEecCcCc--------ccCCC-----EEECCCCEEEEEEcC-CCcEEEEEcCCcee
Confidence 22345445554 4566666544321 11121 111122344554322 34577999999642
Q ss_pred -c---cceEEEEeCCeeEEe
Q 018199 343 -F---LPRKLCVLPAAIEMI 358 (359)
Q Consensus 343 -~---~p~~i~v~p~~l~vl 358 (359)
. ..++++-.+..++++
T Consensus 255 ~l~~~d~i~i~~s~~~~~li 274 (296)
T PRK04539 255 DVQNLDRITIRRYRNPLRIL 274 (296)
T ss_pred ecCCCCEEEEEECCCceEEE
Confidence 2 357888888887764
No 37
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.18 E-value=0.00053 Score=62.62 Aligned_cols=229 Identities=17% Similarity=0.216 Sum_probs=121.7
Q ss_pred cEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEecCCchHHHHHHHHHHHcCCCEEEEEeCCchHHHHHhHhHh
Q 018199 48 DLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFS 127 (359)
Q Consensus 48 ~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTv~evlngl~~ 127 (359)
++.|+.|++ .++.+..+++...|.+. ++++. .+++|.+++.|||||+-.++..+..
T Consensus 2 ~i~Ii~~~~---~~~~~~~~~l~~~l~~~---g~~~~------------------~~~~Dlvi~iGGDGT~L~a~~~~~~ 57 (265)
T PRK04885 2 KVAIISNGD---PKSKRVASKLKKYLKDF---GFILD------------------EKNPDIVISVGGDGTLLSAFHRYEN 57 (265)
T ss_pred EEEEEeCCC---HHHHHHHHHHHHHHHHc---CCccC------------------CcCCCEEEEECCcHHHHHHHHHhcc
Confidence 478888843 34445556666666543 22210 1358999999999999999987632
Q ss_pred CCccccccccccCCcceEEEeeCcChhhhhhhcCCCCCHHHHHHHHHcCCee--eEeEEEEEc--cCCC--ceEEEEEec
Q 018199 128 AGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRNDPYEAVERIAKGVRS--WVDVGVING--ETGE--PHYFINVAD 201 (359)
Q Consensus 128 ~~~~~~~~~~~~~~~~~lgiiP~GTgN~~Ar~lg~~~~~~~al~~i~~g~~~--~iD~~~v~~--~~~~--~~~f~~~~~ 201 (359)
. ..++|+--|..|+-.-++ ++. +.+..++++.+.+|+.. +.-+.++.- .++. ..+.+|-+.
T Consensus 58 ~-----------~~~iPilGIN~G~lGFL~-~~~-~~~~~~~l~~i~~g~y~i~~r~~L~~~v~~~~~~~~~~~alNev~ 124 (265)
T PRK04885 58 Q-----------LDKVRFVGVHTGHLGFYT-DWR-PFEVDKLVIALAKDPGQVVSYPLLEVKITYEDGEKEKYLALNEAT 124 (265)
T ss_pred c-----------CCCCeEEEEeCCCceecc-cCC-HHHHHHHHHHHHcCCceEEEEeeEEEEEEeCCCcEeeeeeeeeee
Confidence 0 146788889999844333 222 23567889999998753 222333331 1111 123444321
Q ss_pred cccchhhcccccccccccChhhHHHHHHHHhcCCCCcEEEEEcCeeEEEecceEEEEEeC--cc----cccCCceeCCCC
Q 018199 202 LHLSAKAGYYASRYKRFGNLCYVIGALQAFMGHRNQDLRVKVNEGEWEEYSQVTALCIGN--AK----YFGGGMKITPNA 275 (359)
Q Consensus 202 ~G~~a~~~~~~~~~~~~G~~~Y~~~~l~~l~~~~~~~~~i~~d~~~~~~~~~~~~~~v~N--~~----~~ggg~~i~P~a 275 (359)
+. + + .+...+++.+|++.+..+ +.-.+.|+. ++ ...||--+.|..
T Consensus 125 i~------------~--~--------------~~~~~~~v~id~~~~~~~-~gDGlIVsTptGSTAYslSaGGPIv~P~~ 175 (265)
T PRK04885 125 IK------------R--I--------------EGTLVADVYINGVLFERF-RGDGLCVSTPTGSTAYNKSLGGAVLHPSI 175 (265)
T ss_pred ec------------c--C--------------CceEEEEEEECCEEEEEE-EcCEEEEECCCChHHHHhhCCCceeCCCC
Confidence 10 0 0 012357888898876543 233345554 21 123555555643
Q ss_pred CCCCCeeEEEEEecCCHHHHHHHHHhhhCCeeeeeCCEEEEEEeEEEEEeccCCCCceEEecCCCCCc---cceEEEEeC
Q 018199 276 DPRNGYFEVVILQDFKWYDFILKLLKLYNGTHLSVKNVTSRRAHSIEVEDISSGDSIYVQSDGEHLGF---LPRKLCVLP 352 (359)
Q Consensus 276 ~~~DG~ldv~~v~~~~~~~ll~~l~~~~~G~~~~~~~v~~~~~~~i~i~~~~~~~~~~~~iDGE~~~~---~p~~i~v~p 352 (359)
+++++.+...+ ..+.+++. ..| +-.=...+++|+..+ .....+.+||..... ..++++..+
T Consensus 176 -------~~~~ltPI~~l-----~~r~~~~~--~~p-lVl~~~~~I~i~~~~-~~~~~l~~DG~~~~l~~~d~i~i~~s~ 239 (265)
T PRK04885 176 -------EALQLTEIASI-----NNRVFRTL--GSP-LILPKHHTITLKPVN-DDDYQITVDHLTIKHKNVKSIEYRVAN 239 (265)
T ss_pred -------CeEEEEeeccc-----cccccccC--CCC-EEECCCCEEEEEEcC-CCcEEEEECCCEeecCCCCEEEEEECC
Confidence 45555543310 01111110 001 111122334554322 345778999998332 358888888
Q ss_pred CeeEEe
Q 018199 353 AAIEMI 358 (359)
Q Consensus 353 ~~l~vl 358 (359)
+.++++
T Consensus 240 ~~~~li 245 (265)
T PRK04885 240 EKIRFA 245 (265)
T ss_pred ceEEEE
Confidence 888875
No 38
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.17 E-value=0.00053 Score=62.22 Aligned_cols=187 Identities=16% Similarity=0.241 Sum_probs=101.7
Q ss_pred cCCCEEEEEeCCchHHHHHhHhHhCCccccccccccCCcceEEEeeCcChhhhhhhcCCCC-----CHHH-HHHHHHcCC
Q 018199 104 EGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRN-----DPYE-AVERIAKGV 177 (359)
Q Consensus 104 ~~~d~ivv~GGDGTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~GTgN~~Ar~lg~~~-----~~~~-al~~i~~g~ 177 (359)
+++|.|++.|||||+-.++.-+. ..++|+--|..|+ +|.=. +..+ .++.+.+.+
T Consensus 32 ~~~D~vi~iGGDGT~L~a~~~~~-------------~~~iPilGIN~G~-------lGFL~~~~~~~~~~~~~~~l~~~~ 91 (259)
T PRK00561 32 DGADYLFVLGGDGFFVSTAANYN-------------CAGCKVVGINTGH-------LGFYTSFNETDLDQNFANKLDQLK 91 (259)
T ss_pred CCCCEEEEECCcHHHHHHHHHhc-------------CCCCcEEEEecCC-------CccccccCHHHHHHHHHHHHhhCC
Confidence 45899999999999999998653 3567888899997 55432 3344 555565555
Q ss_pred eeeEeEEEEEccCCCceEEEEEeccccchhhcccccccccccChhhHHHHHHHHhcCCCCcEEEEEcCeeEEEecceEEE
Q 018199 178 RSWVDVGVINGETGEPHYFINVADLHLSAKAGYYASRYKRFGNLCYVIGALQAFMGHRNQDLRVKVNEGEWEEYSQVTAL 257 (359)
Q Consensus 178 ~~~iD~~~v~~~~~~~~~f~~~~~~G~~a~~~~~~~~~~~~G~~~Y~~~~l~~l~~~~~~~~~i~~d~~~~~~~~~~~~~ 257 (359)
.....+.++...+ +..+.+|-+.+ . .+. ...+++.+|++.+..+ +.-.+
T Consensus 92 ~~~r~~L~~~~~~-~~~~AlNE~vi--------~------~~~---------------~~~~~v~idg~~~~~~-~gDGl 140 (259)
T PRK00561 92 FTQIDLLEVQIDD-QIHLVLNELAV--------Y------TNT---------------AYPINIFIDNEFWEKY-RGSGL 140 (259)
T ss_pred eEEEEEEEEEECC-CeeEEEEEEEE--------c------cCC---------------ceEEEEEECCEEEEEE-ecCEE
Confidence 5555555555322 22455553322 0 011 1367888998775443 23345
Q ss_pred EEeCc--c----cccCCceeCCCCCCCCCeeEEEEEecCCHHHHHHHHHhhhCCeeeeeCCEEEEEEeEEEEEeccC---
Q 018199 258 CIGNA--K----YFGGGMKITPNADPRNGYFEVVILQDFKWYDFILKLLKLYNGTHLSVKNVTSRRAHSIEVEDISS--- 328 (359)
Q Consensus 258 ~v~N~--~----~~ggg~~i~P~a~~~DG~ldv~~v~~~~~~~ll~~l~~~~~G~~~~~~~v~~~~~~~i~i~~~~~--- 328 (359)
.|+.. + ..+||.-+.|. ++++++.+.....+-. ..... +. +..-....++|+..+.
T Consensus 141 IVsTPtGSTAYslSAGGPIv~P~-------~~~~~itPI~Ph~~~~--~~~~~-rp-----lVl~~~~~I~i~~~~~~~~ 205 (259)
T PRK00561 141 LIGPRTGSTALAKSAKGAVIFPR-------IDVIQIIELNPLLHPN--QTTIQ-SP-----IILPIDTKVEFEIKKAFDH 205 (259)
T ss_pred EEeCchHHHHHHHhCCCCccCCC-------CCeEEEEeeCCCCccc--ccccC-CC-----eEECCCCEEEEEEccCCCC
Confidence 55542 1 22455555664 3556665543321100 00011 11 1111223344443211
Q ss_pred CCCceEEecCCCCCc----cceEEEEeCCeeE
Q 018199 329 GDSIYVQSDGEHLGF----LPRKLCVLPAAIE 356 (359)
Q Consensus 329 ~~~~~~~iDGE~~~~----~p~~i~v~p~~l~ 356 (359)
+.+..+.+||+.... ..+.++..+..++
T Consensus 206 ~~~~~l~~DG~~~~~l~~~d~v~i~~s~~~~~ 237 (259)
T PRK00561 206 DQFPRFYADGAKLRLGNSDTTIEISLVRSQAM 237 (259)
T ss_pred CCcEEEEEcCCeeecCCCCCEEEEEEcCccce
Confidence 134678999998653 2478888887777
No 39
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.16 E-value=0.00036 Score=63.86 Aligned_cols=236 Identities=15% Similarity=0.172 Sum_probs=118.8
Q ss_pred cEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEecCCchHHHHHH-HHHHHcCCCEEEEEeCCchHHHHHhHhH
Q 018199 48 DLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDIT-REAIKEGADAVIAVGGDGTLHEVVNGFF 126 (359)
Q Consensus 48 ~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t~~~~~a~~~~-~~~~~~~~d~ivv~GGDGTv~evlngl~ 126 (359)
++.|+.||.. ..+.+..+++...|. . ++++.. ........... ......+.|.+++.|||||+-.+++.+
T Consensus 2 ~i~iv~~~~~--~~~~~~~~~i~~~l~-~---g~~~~~--~~~~~~~~~~~~~~~~~~~~D~vi~lGGDGT~L~a~~~~- 72 (271)
T PRK01185 2 KVAFVIRKDC--KRCIKIAKSIIELLP-P---DWEIIY--EMEAAKALGMDGLDIEEINADVIITIGGDGTILRTLQRA- 72 (271)
T ss_pred EEEEEecCCC--HHHHHHHHHHHHHHh-c---CCEEEE--echhhhhcCcccCcccccCCCEEEEEcCcHHHHHHHHHc-
Confidence 5889999853 344445566666552 2 233321 11110000000 000112589999999999998887743
Q ss_pred hCCccccccccccCCcceEEEeeCcChhhhhhhcCCCCCHHHHHHHHHcCCee--eEeEEEEEccCCC-ceEEEEEeccc
Q 018199 127 SAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRNDPYEAVERIAKGVRS--WVDVGVINGETGE-PHYFINVADLH 203 (359)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~lgiiP~GTgN~~Ar~lg~~~~~~~al~~i~~g~~~--~iD~~~v~~~~~~-~~~f~~~~~~G 203 (359)
..|+--|..|+-.-++ .+. +.+..++++.+++|... +.-..++.- +++ ..+.+|-+.+
T Consensus 73 ---------------~~PilGIN~G~lGFL~-~~~-~~~~~~~l~~i~~g~~~i~~r~~L~~~v-~g~~~~~aLNdvvv- 133 (271)
T PRK01185 73 ---------------KGPILGINMGGLGFLT-EIE-IDEVGSAIKKLIRGEYFIDERMKLKVYI-NGERLEDCTNEAVI- 133 (271)
T ss_pred ---------------CCCEEEEECCCCccCc-ccC-HHHHHHHHHHHHcCCcEEEEeeEEEEEE-CCcEeEEEEEEEEE-
Confidence 1355557889833222 111 23567889999998643 222223332 111 1234443211
Q ss_pred cchhhcccccccccccChhhHHHHHHHHhcCCCCcEEEEEcCeeEEEecceEEEEEeCc--c----cccCCceeCCCCCC
Q 018199 204 LSAKAGYYASRYKRFGNLCYVIGALQAFMGHRNQDLRVKVNEGEWEEYSQVTALCIGNA--K----YFGGGMKITPNADP 277 (359)
Q Consensus 204 ~~a~~~~~~~~~~~~G~~~Y~~~~l~~l~~~~~~~~~i~~d~~~~~~~~~~~~~~v~N~--~----~~ggg~~i~P~a~~ 277 (359)
.. +.. .+-..+++.+|++....+ +.-.+.|+.. + ...||--+.|..
T Consensus 134 -------~~------~~~------------~~~i~~~v~i~~~~~~~~-~~DGlIVsTPTGSTAYslSAGGPIv~P~~-- 185 (271)
T PRK01185 134 -------HT------DRI------------AKIRQFKIYYDGHFLDTF-KADGVIVATPTGSTSYSSSAGGPILLPNL-- 185 (271)
T ss_pred -------ec------CCC------------CcEEEEEEEECCEEEEEE-EeeEEEEeCCCchHHHHhhCCCceeCCCC--
Confidence 00 000 011356788888766543 3344556542 1 223455555644
Q ss_pred CCCeeEEEEEecCCHHHHHHHHHhhhCCeeeeeCCEEEEEEeEEEEEeccCCCCceEEecCCCCC-c---cceEEEEeCC
Q 018199 278 RNGYFEVVILQDFKWYDFILKLLKLYNGTHLSVKNVTSRRAHSIEVEDISSGDSIYVQSDGEHLG-F---LPRKLCVLPA 353 (359)
Q Consensus 278 ~DG~ldv~~v~~~~~~~ll~~l~~~~~G~~~~~~~v~~~~~~~i~i~~~~~~~~~~~~iDGE~~~-~---~p~~i~v~p~ 353 (359)
+++++.+..... +..+.+ -.-.-.+++++..+ +++..+.+||+... . ..++++..++
T Consensus 186 -----~~~~ltPI~Ph~--------l~~rpl-----Vl~~~~~I~i~~~~-~~~~~l~~DG~~~~~l~~~d~i~i~~s~~ 246 (271)
T PRK01185 186 -----EGMVISYIAPYS--------SRPKSV-----VVPSESTVEIKIAG-DQSSLLILDGQYEYKISKGDTVEISKSEN 246 (271)
T ss_pred -----CeEEEEecccCC--------CCCCCE-----EECCCCEEEEEEcC-CCCEEEEECCCceEecCCCCEEEEEECCC
Confidence 455565543321 111211 11122244454322 34677999999642 2 3588888888
Q ss_pred eeEEe
Q 018199 354 AIEMI 358 (359)
Q Consensus 354 ~l~vl 358 (359)
.++++
T Consensus 247 ~~~~v 251 (271)
T PRK01185 247 YARFI 251 (271)
T ss_pred eeEEE
Confidence 88775
No 40
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=98.06 E-value=2.5e-06 Score=79.09 Aligned_cols=113 Identities=24% Similarity=0.243 Sum_probs=71.6
Q ss_pred cEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEecCCch-----------------------HHHHHHHHHHHc
Q 018199 48 DLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPS-----------------------HAIDITREAIKE 104 (359)
Q Consensus 48 ~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t~~~~-----------------------~a~~~~~~~~~~ 104 (359)
|+.||.||.. ..+.+.++++...|.+.. ...+.. ...-.. +......+...+
T Consensus 1 kVgii~np~~--~~~~~~~~~~~~~L~~~~--~~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (285)
T PF01513_consen 1 KVGIIANPNK--PEAIELANELARWLLEKQ--GIEVLV-EGSIAEDILEAIKKRYEVISVEKKLKTLDDTRNALEEMLEE 75 (285)
T ss_dssp -EEEEESSCG--HCCCHHHHHHHHHHHHTT--TEEEEE-EHHHHHSHCCCSHSCCCCCTTSHCCCCTCEEEECCHHHHCC
T ss_pred CEEEEEcCCC--HHHHHHHHHHHHHHHhCC--CEEEEE-ChHHHHHHHHhccccccccccccccccccccchhhhhhccc
Confidence 6899999982 344556677777777651 111111 000000 000112334457
Q ss_pred CCCEEEEEeCCchHHHHHhHhHhCCccccccccccCCcceEEEeeCcChhhhhhhcCCCCCHHHHHHHHHcCCeee
Q 018199 105 GADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRNDPYEAVERIAKGVRSW 180 (359)
Q Consensus 105 ~~d~ivv~GGDGTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~GTgN~~Ar~lg~~~~~~~al~~i~~g~~~~ 180 (359)
++|.||++|||||+-.++..+. ...+|+--|+.||-|-++. + -+.+..++++.+.+|+...
T Consensus 76 ~~D~ii~lGGDGT~L~~~~~~~-------------~~~~Pilgin~G~lgfl~~-~-~~~~~~~~l~~~~~g~~~~ 136 (285)
T PF01513_consen 76 GVDLIIVLGGDGTFLRAARLFG-------------DYDIPILGINTGTLGFLTE-F-EPEDIEEALEKILAGEYSI 136 (285)
T ss_dssp CSSEEEEEESHHHHHHHHHHCT-------------TST-EEEEEESSSSTSSSS-E-EGCGHHHHHHHHHHTHCEE
T ss_pred CCCEEEEECCCHHHHHHHHHhc-------------cCCCcEEeecCCCcccccc-C-CHHHHHHHHHHHhcCCeEE
Confidence 8999999999999999999873 3579999999999554443 3 2357888999999886643
No 41
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.04 E-value=0.0012 Score=67.10 Aligned_cols=247 Identities=15% Similarity=0.094 Sum_probs=128.9
Q ss_pred CCCCCCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEecCCchHHHH-HHH---H-HHHcCCCEEEEEeCCc
Q 018199 42 SSSRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAID-ITR---E-AIKEGADAVIAVGGDG 116 (359)
Q Consensus 42 ~~~~~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t~~~~~a~~-~~~---~-~~~~~~d~ivv~GGDG 116 (359)
-..+++++.|+.||.. ..+.+..+++...|.+. ++++.+.. ........ ... . ....+.|.||+.||||
T Consensus 286 w~~~~~~i~iv~~~~~--~~~~~~~~~i~~~l~~~---~~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~dlvi~lGGDG 359 (569)
T PRK14076 286 WRIKPTKFGIVSRIDN--EEAINLALKIIKYLDSK---GIPYELES-FLYNKLKNRLNEECNLIDDIEEISHIISIGGDG 359 (569)
T ss_pred cccCCcEEEEEcCCCC--HHHHHHHHHHHHHHHHC---CCEEEEec-hhhhhhcccccccccccccccCCCEEEEECCcH
Confidence 3567888999999863 34445556666666543 23332211 10000000 000 0 0112579999999999
Q ss_pred hHHHHHhHhHhCCccccccccccCCcceEEEeeCcChhhhhhhcCCCCCHHHHHHHHHcCCee--eEeEEEEE---ccCC
Q 018199 117 TLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRNDPYEAVERIAKGVRS--WVDVGVIN---GETG 191 (359)
Q Consensus 117 Tv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~GTgN~~Ar~lg~~~~~~~al~~i~~g~~~--~iD~~~v~---~~~~ 191 (359)
|+-.++.-+. ...+|+--|.+|+-.-++ .+. +.+..++++.+++|+.. +.-..++. ....
T Consensus 360 T~L~aa~~~~-------------~~~~PilGin~G~lGFL~-~~~-~~~~~~~l~~~~~g~~~i~~r~~L~~~v~~~~~~ 424 (569)
T PRK14076 360 TVLRASKLVN-------------GEEIPIICINMGTVGFLT-EFS-KEEIFKAIDSIISGEYEIEKRTKLSGFILKDGHQ 424 (569)
T ss_pred HHHHHHHHhc-------------CCCCCEEEEcCCCCCcCc-ccC-HHHHHHHHHHHHcCCceEEEeEEEEEEEEECCcc
Confidence 9999998763 246788889999933333 121 23567889999998753 22222222 2111
Q ss_pred C-ceEEEEEeccccchhhcccccccccccChhhHHHHHHHHhcCCCCcEEEEEcCeeEEEecceEEEEEeCc--c----c
Q 018199 192 E-PHYFINVADLHLSAKAGYYASRYKRFGNLCYVIGALQAFMGHRNQDLRVKVNEGEWEEYSQVTALCIGNA--K----Y 264 (359)
Q Consensus 192 ~-~~~f~~~~~~G~~a~~~~~~~~~~~~G~~~Y~~~~l~~l~~~~~~~~~i~~d~~~~~~~~~~~~~~v~N~--~----~ 264 (359)
. ..+.+|-+.+ .. +.. .+-..+++.+|++.+..+ ..-.+.|+.. + .
T Consensus 425 ~~~~~alNdv~i--------~~------~~~------------~~~~~~~v~i~~~~~~~~-~~DGlivsTptGSTaYsl 477 (569)
T PRK14076 425 NILPSALNEVVI--------TT------KNP------------AKMLHFEVYVNGELVEEV-RADGIIISTPTGSTAYSL 477 (569)
T ss_pred eeeeEEEEEEEE--------cc------CCC------------CceEEEEEEECCEEEEEE-ECCEEEEeCCCchHHHHh
Confidence 1 2244553221 00 000 122457888898776543 2334555542 1 2
Q ss_pred ccCCceeCCCCCCCCCeeEEEEEecCCHHHHHHHHHhhhCCeeeeeCCEEEEEEeEEEEEeccCCCCceEEecCCCC-Cc
Q 018199 265 FGGGMKITPNADPRNGYFEVVILQDFKWYDFILKLLKLYNGTHLSVKNVTSRRAHSIEVEDISSGDSIYVQSDGEHL-GF 343 (359)
Q Consensus 265 ~ggg~~i~P~a~~~DG~ldv~~v~~~~~~~ll~~l~~~~~G~~~~~~~v~~~~~~~i~i~~~~~~~~~~~~iDGE~~-~~ 343 (359)
..||-.+.|. ++++++.+..... +..+. +-.-....++|+.. +++..+.+||... ..
T Consensus 478 SAGGPiv~p~-------~~~~~~tPI~ph~--------l~~rp-----lV~~~~~~i~i~~~--~~~~~l~~DG~~~~~l 535 (569)
T PRK14076 478 SAGGPIVEPT-------VDGFIIVPICPFK--------LSSRP-----LVVSANSEIKIKLL--KKSALVVIDGSIEFEA 535 (569)
T ss_pred hCCCceeCCC-------CCeEEEEeeccCC--------CCCCC-----EEECCCCEEEEEEe--CCcEEEEECCceeeec
Confidence 2345445553 3455555433221 11122 11112234445432 2467789999853 22
Q ss_pred ---cceEEEEeCCeeEEe
Q 018199 344 ---LPRKLCVLPAAIEMI 358 (359)
Q Consensus 344 ---~p~~i~v~p~~l~vl 358 (359)
..+.|+..+..++++
T Consensus 536 ~~gd~I~I~~s~~~~~~v 553 (569)
T PRK14076 536 KKGDEIIFRKSDSYAYFV 553 (569)
T ss_pred CCCCEEEEEECCceEEEE
Confidence 358888888888775
No 42
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=97.85 E-value=0.0043 Score=55.90 Aligned_cols=36 Identities=22% Similarity=0.448 Sum_probs=29.5
Q ss_pred CCCEEEEEeCCchHHHHHhHhHhCCccccccccccCCcceEEEeeCcCh
Q 018199 105 GADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTG 153 (359)
Q Consensus 105 ~~d~ivv~GGDGTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~GTg 153 (359)
++|.|++.|||||+-.+++.+. ...+|+--|..|+-
T Consensus 25 ~~Dlvi~iGGDGTlL~a~~~~~-------------~~~~PvlGIN~G~l 60 (246)
T PRK04761 25 EADVIVALGGDGFMLQTLHRYM-------------NSGKPVYGMNRGSV 60 (246)
T ss_pred cCCEEEEECCCHHHHHHHHHhc-------------CCCCeEEEEeCCCC
Confidence 4799999999999999998764 24578777888883
No 43
>PLN02727 NAD kinase
Probab=97.81 E-value=0.0042 Score=64.70 Aligned_cols=108 Identities=19% Similarity=0.295 Sum_probs=67.7
Q ss_pred CCCCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEecCCchHHH-HH------------HHHHHHcCCCEEE
Q 018199 44 SRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAI-DI------------TREAIKEGADAVI 110 (359)
Q Consensus 44 ~~~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t~~~~~a~-~~------------~~~~~~~~~d~iv 110 (359)
.++++++||.++.. .......++...|.+. .++++ +......+.. .. -.+...+..|.||
T Consensus 676 ~p~rtVgIV~K~~~---ea~~~~~eL~~~L~~~--~gi~V--~VE~~~a~~l~~~~~~~~~~~~~~~~~~el~~~~DLVI 748 (986)
T PLN02727 676 STPKTVLLLKKLGQ---ELMEEAKEVASFLYHQ--EKMNV--LVEPDVHDIFARIPGFGFVQTFYSQDTSDLHERVDFVA 748 (986)
T ss_pred CCCCEEEEEcCCcH---HHHHHHHHHHHHHHhC--CCeEE--EEecchHHHhhccccccccceecccchhhcccCCCEEE
Confidence 55899999999975 3444556666777653 12333 2221111110 00 0011123589999
Q ss_pred EEeCCchHHHHHhHhHhCCccccccccccCCcceEEEeeCcChhhhhhhcCCCC-----CHHHHHHHHHcCCe
Q 018199 111 AVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRN-----DPYEAVERIAKGVR 178 (359)
Q Consensus 111 v~GGDGTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~GTgN~~Ar~lg~~~-----~~~~al~~i~~g~~ 178 (359)
++|||||+-.++..+. ...+||--|.+|+ ||+=. +..+++..+++|..
T Consensus 749 vLGGDGTlLrAar~~~-------------~~~iPILGINlGr-------LGFLTdi~~ee~~~~L~~Il~G~y 801 (986)
T PLN02727 749 CLGGDGVILHASNLFR-------------GAVPPVVSFNLGS-------LGFLTSHYFEDFRQDLRQVIHGNN 801 (986)
T ss_pred EECCcHHHHHHHHHhc-------------CCCCCEEEEeCCC-------ccccccCCHHHHHHHHHHHHcCCc
Confidence 9999999999998763 3457888899998 66532 34577888888864
No 44
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.58 E-value=0.011 Score=54.14 Aligned_cols=193 Identities=16% Similarity=0.110 Sum_probs=100.8
Q ss_pred cCCCEEEEEeCCchHHHHHhHhHhCCccccccccccCCcceEEEeeCcChhhhhhhcCCCCCHHHHHHHHHc-CCee--e
Q 018199 104 EGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRNDPYEAVERIAK-GVRS--W 180 (359)
Q Consensus 104 ~~~d~ivv~GGDGTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~GTgN~~Ar~lg~~~~~~~al~~i~~-g~~~--~ 180 (359)
+++|.|++.|||||+-.++..+. ..++|+--|..|+-.-++. .. +.+..++++.+++ |+.+ +
T Consensus 41 ~~~d~vi~iGGDGT~L~aa~~~~-------------~~~~PilgIn~G~lGFL~~-~~-~~~~~~~l~~~~~~g~~~i~~ 105 (272)
T PRK02231 41 QRAQLAIVIGGDGNMLGRARVLA-------------KYDIPLIGINRGNLGFLTD-ID-PKNAYEQLEACLERGEFFVEE 105 (272)
T ss_pred cCCCEEEEECCcHHHHHHHHHhc-------------cCCCcEEEEeCCCCccccc-CC-HHHHHHHHHHHHhcCCceEEE
Confidence 46899999999999999998763 2356766679998322221 10 1234566777776 7532 2
Q ss_pred EeEEEEEcc-CCC---ceEEEEEeccccchhhcccccccccccChhhHHHHHHHHhcCCCCcEEEEEcCeeEEEecceEE
Q 018199 181 VDVGVINGE-TGE---PHYFINVADLHLSAKAGYYASRYKRFGNLCYVIGALQAFMGHRNQDLRVKVNEGEWEEYSQVTA 256 (359)
Q Consensus 181 iD~~~v~~~-~~~---~~~f~~~~~~G~~a~~~~~~~~~~~~G~~~Y~~~~l~~l~~~~~~~~~i~~d~~~~~~~~~~~~ 256 (359)
.-+.++.-. +++ ..+.+|-+.+ .. +.. .+-..+++.+|++....+ +.-.
T Consensus 106 r~~L~~~v~~~~~~~~~~~alNev~i--------~~------~~~------------~~~~~~~v~i~~~~~~~~-~~DG 158 (272)
T PRK02231 106 RFLLEAKIERNGKIIATSNALNEVVI--------HP------AKI------------AHMIDFHVYIDDKFAFSQ-RSDG 158 (272)
T ss_pred eeeEEEEEEECCeEeeeeEEEEEEEE--------ec------CCC------------CceEEEEEEECCEEEEEE-ecCe
Confidence 233333211 111 1234443221 00 000 112357788888765543 3334
Q ss_pred EEEeCcc------cccCCceeCCCCCCCCCeeEEEEEecCCHHHHHHHHHhhhCCeeeeeCCEEEEEEeEEEEEeccC-C
Q 018199 257 LCIGNAK------YFGGGMKITPNADPRNGYFEVVILQDFKWYDFILKLLKLYNGTHLSVKNVTSRRAHSIEVEDISS-G 329 (359)
Q Consensus 257 ~~v~N~~------~~ggg~~i~P~a~~~DG~ldv~~v~~~~~~~ll~~l~~~~~G~~~~~~~v~~~~~~~i~i~~~~~-~ 329 (359)
+.|+... ...||--+.|+. +++++.+..... +..+. +-.=....++|+..+. .
T Consensus 159 lIVsTPtGSTAY~lSAGGPIv~P~~-------~~~~itPI~Phs--------l~~Rp-----iVl~~~~~I~i~~~~~~~ 218 (272)
T PRK02231 159 LIISTPTGSTAYSLSAGGPILTPNL-------NAIALVPMFPHT--------LSSRP-----LVIDGDSKISLRFAEYNT 218 (272)
T ss_pred EEEECCCcHHHHHhhCCCceeCCCC-------CeEEEEeccccc--------cCCCC-----EEECCCCEEEEEEcCCCC
Confidence 5555421 223454555543 556665543321 11111 1111233445544221 2
Q ss_pred CCceEEecCCCCC---c-cceEEEEeCCeeEEe
Q 018199 330 DSIYVQSDGEHLG---F-LPRKLCVLPAAIEMI 358 (359)
Q Consensus 330 ~~~~~~iDGE~~~---~-~p~~i~v~p~~l~vl 358 (359)
+...+.+||.... . ..++|+..++.++++
T Consensus 219 ~~~~l~~DG~~~~~l~~~d~v~I~~s~~~~~lv 251 (272)
T PRK02231 219 PQLEVSCDSQIALPFTPDDRVHVQKSPDKLRLL 251 (272)
T ss_pred ccEEEEECCCeEEEeCCCcEEEEEEcCCEEEEE
Confidence 3467899999642 2 248888888888775
No 45
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=97.50 E-value=0.001 Score=65.14 Aligned_cols=116 Identities=19% Similarity=0.269 Sum_probs=67.1
Q ss_pred CCCCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEecCCchHH---------HH---HHHH--HHHcCCCEE
Q 018199 44 SRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHA---------ID---ITRE--AIKEGADAV 109 (359)
Q Consensus 44 ~~~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t~~~~~a---------~~---~~~~--~~~~~~d~i 109 (359)
..+++++||.||.. ..+.+...++...|.+. .++.+.+.... .... .. .... .....+|.|
T Consensus 192 ~~p~~VgIV~n~~k--~~a~el~~~I~~~L~~~--~gi~V~ve~~~-a~~l~~~~~~~~~~~~~~~~~~~~~l~~~~DlV 266 (508)
T PLN02935 192 SDPQTVLIITKPNS--TSVRVLCAEMVRWLREQ--KGLNIYVEPRV-KKELLSESSYFNFVQTWEDEKEILLLHTKVDLV 266 (508)
T ss_pred CCCCEEEEEecCCC--HHHHHHHHHHHHHHHhc--CCCEEEEechh-hhhhccccccccccccccccchhhhcccCCCEE
Confidence 44899999999964 34445556666666532 12333221100 0000 00 0001 012468999
Q ss_pred EEEeCCchHHHHHhHhHhCCccccccccccCCcceEEEeeCcChhhhhhhcCCCCCHHHHHHHHHcCCee
Q 018199 110 IAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRNDPYEAVERIAKGVRS 179 (359)
Q Consensus 110 vv~GGDGTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~GTgN~~Ar~lg~~~~~~~al~~i~~g~~~ 179 (359)
|++|||||+-.++.-+. ...+|+--|..|+---+ -.+. +.+..++++.+++|...
T Consensus 267 IsiGGDGTlL~Aar~~~-------------~~~iPILGIN~G~LGFL-t~i~-~~e~~~~Le~il~G~y~ 321 (508)
T PLN02935 267 ITLGGDGTVLWAASMFK-------------GPVPPVVPFSMGSLGFM-TPFH-SEQYRDCLDAILKGPIS 321 (508)
T ss_pred EEECCcHHHHHHHHHhc-------------cCCCcEEEEeCCCccee-cccC-HHHHHHHHHHHHcCCce
Confidence 99999999999998763 24577777888882221 1111 23467889999998653
No 46
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=97.11 E-value=0.086 Score=48.72 Aligned_cols=189 Identities=17% Similarity=0.193 Sum_probs=104.2
Q ss_pred cCCCEEEEEeCCchHHHHHhHhHhCCccccccccccCCcceEEEeeCcChhhhhhhcCCC-----CCHHHHHHHHHcCCe
Q 018199 104 EGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWR-----NDPYEAVERIAKGVR 178 (359)
Q Consensus 104 ~~~d~ivv~GGDGTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~GTgN~~Ar~lg~~-----~~~~~al~~i~~g~~ 178 (359)
+.+|.|++.|||||+-.+++.+. ...+|+--|-.|+ ||+= .+.+++++.+.+++.
T Consensus 54 ~~~d~ivvlGGDGtlL~~~~~~~-------------~~~~pilgin~G~-------lGFLt~~~~~~~~~~~~~~~~~~~ 113 (281)
T COG0061 54 EKADLIVVLGGDGTLLRAARLLA-------------RLDIPVLGINLGH-------LGFLTDFEPDELEKALDALLEGEY 113 (281)
T ss_pred cCceEEEEeCCcHHHHHHHHHhc-------------cCCCCEEEEeCCC-------cccccccCHHHHHHHHHHHhcCce
Confidence 67899999999999999999774 2447888888887 6653 345778888888765
Q ss_pred e--eEeEEEEEccC--CCceEEEEEeccccchhhcccccccccccChhhHHHHHHHHhcCCCCcEEEEEcCeeEEEecce
Q 018199 179 S--WVDVGVINGET--GEPHYFINVADLHLSAKAGYYASRYKRFGNLCYVIGALQAFMGHRNQDLRVKVNEGEWEEYSQV 254 (359)
Q Consensus 179 ~--~iD~~~v~~~~--~~~~~f~~~~~~G~~a~~~~~~~~~~~~G~~~Y~~~~l~~l~~~~~~~~~i~~d~~~~~~~~~~ 254 (359)
+ +.-+.++.-.. ....+.+|-+.+ .++. . .+-..+.+.+|+..+.++ +.
T Consensus 114 ~~~~r~~l~~~v~~~~~~~~~aLNEv~I--------~~~~------~------------~~~~~~~v~id~~~~~~~-r~ 166 (281)
T COG0061 114 RIEERLLLEVSVNRGDIRRALALNEVVI--------HRGS------P------------AKMIEFEVYIDDEFFESF-RG 166 (281)
T ss_pred EEEEeEEEEEEEEeCCccccceeeEEEE--------ecCC------C------------CcEEEEEEEECCEEEEEE-ec
Confidence 5 33333322211 112345553321 1110 0 001235678888877654 33
Q ss_pred EEEEEeCcc------cccCCceeCCCCCCCCCeeEEEEEecCCHHHHHHHHHhhhCCeeeeeCCEEEEEEeEEEEEeccC
Q 018199 255 TALCIGNAK------YFGGGMKITPNADPRNGYFEVVILQDFKWYDFILKLLKLYNGTHLSVKNVTSRRAHSIEVEDISS 328 (359)
Q Consensus 255 ~~~~v~N~~------~~ggg~~i~P~a~~~DG~ldv~~v~~~~~~~ll~~l~~~~~G~~~~~~~v~~~~~~~i~i~~~~~ 328 (359)
-.++|+... ..+||--+.| .++++.+.+.....+ . -+.+-.|... ..++++... .
T Consensus 167 DGliVsTPTGSTAY~lSAGGPIv~P-------~l~ai~ltpi~p~~l-------~-~Rpiv~p~~~---~v~i~~~~~-~ 227 (281)
T COG0061 167 DGLIVSTPTGSTAYNLSAGGPILHP-------GLDAIQLTPICPHSL-------S-FRPLVLPSSS---TVRIEVLLT-P 227 (281)
T ss_pred CEEEEEcCCcHHHHhhhcCCCccCC-------CCCeEEEeecCCCcc-------c-CCCEEECCCc---eEEEEEccC-C
Confidence 345666421 1123333444 567777777654321 1 1222222221 112223211 1
Q ss_pred CCCceEEecCCCCCcc----ceEEEEeCCeeEEe
Q 018199 329 GDSIYVQSDGEHLGFL----PRKLCVLPAAIEMI 358 (359)
Q Consensus 329 ~~~~~~~iDGE~~~~~----p~~i~v~p~~l~vl 358 (359)
.++..+.+||...... .++++..+..++++
T Consensus 228 ~~~~~~~~Dg~~~~~~~~~~~i~i~~s~~~~~~~ 261 (281)
T COG0061 228 KRDAVVVVDGQELLLINPGDRIEIRRSPYKARFI 261 (281)
T ss_pred CcceEEEEcCCceEecCCCCEEEEEECCCceeEE
Confidence 2335678999987542 47888888887764
No 47
>PLN02929 NADH kinase
Probab=95.73 E-value=0.029 Score=52.02 Aligned_cols=62 Identities=26% Similarity=0.348 Sum_probs=43.7
Q ss_pred cCCCEEEEEeCCchHHHHHhHhHhCCccccccccccCCcceEEEeeCcC---------hhhhh--hhcCCC-----CCHH
Q 018199 104 EGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGT---------GSDFA--RTFGWR-----NDPY 167 (359)
Q Consensus 104 ~~~d~ivv~GGDGTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~GT---------gN~~A--r~lg~~-----~~~~ 167 (359)
.+.|.||++|||||+-.++..+ . ..+|+--|..|+ .|.|- |++|+= .+..
T Consensus 63 ~~~Dlvi~lGGDGT~L~aa~~~-~-------------~~iPvlGIN~Gp~~~~~~~~~~~~~~~~r~lGfL~~~~~~~~~ 128 (301)
T PLN02929 63 RDVDLVVAVGGDGTLLQASHFL-D-------------DSIPVLGVNSDPTQKDEVEEYSDEFDARRSTGHLCAATAEDFE 128 (301)
T ss_pred CCCCEEEEECCcHHHHHHHHHc-C-------------CCCcEEEEECCCcccccccccccccccccCccccccCCHHHHH
Confidence 5689999999999999988865 2 346766677774 23332 345542 3457
Q ss_pred HHHHHHHcCCee
Q 018199 168 EAVERIAKGVRS 179 (359)
Q Consensus 168 ~al~~i~~g~~~ 179 (359)
++++.+++|..+
T Consensus 129 ~~L~~il~g~~~ 140 (301)
T PLN02929 129 QVLDDVLFGRLK 140 (301)
T ss_pred HHHHHHHcCCce
Confidence 889999998754
No 48
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=92.70 E-value=0.073 Score=48.97 Aligned_cols=65 Identities=28% Similarity=0.488 Sum_probs=50.6
Q ss_pred CCCEEEEEeCCchHHHHHhHhHhCCccccccccccCCcceEEEe--eCcChhhhhhhcCCCCCHHHHHHHHHcCCeeeE
Q 018199 105 GADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLI--PLGTGSDFARTFGWRNDPYEAVERIAKGVRSWV 181 (359)
Q Consensus 105 ~~d~ivv~GGDGTv~evlngl~~~~~~~~~~~~~~~~~~~lgii--P~GTgN~~Ar~lg~~~~~~~al~~i~~g~~~~i 181 (359)
..|.|+.+|||||+-.++..+.. ...+-||+= |.|+--.++-.-..+.++..|+..+..|..+++
T Consensus 105 waD~VisvGGDGTfL~Aasrv~~------------~~~PViGvNtDP~~Seg~lcL~~~~~~n~~~al~k~~sgnF~wv 171 (395)
T KOG4180|consen 105 WADMVISVGGDGTFLLAASRVID------------DSKPVIGVNTDPTGSEGHLCLPDKYPSNPAGALCKLTSGNFEWV 171 (395)
T ss_pred hhhEEEEecCccceeehhhhhhc------------cCCceeeecCCCCcCcceEeccccCCCCcHHHHHHHHhccHHHh
Confidence 46899999999999888876643 345666663 778877777777777788999999999887654
No 49
>KOG2178 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=92.46 E-value=1.1 Score=42.52 Aligned_cols=54 Identities=26% Similarity=0.469 Sum_probs=41.3
Q ss_pred cCCCEEEEEeCCchHHHHHhHhHhCCccccccccccCCcceEEEeeCcChhhhhhhcCCCC-----CHHHHHHHHHcCC
Q 018199 104 EGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRN-----DPYEAVERIAKGV 177 (359)
Q Consensus 104 ~~~d~ivv~GGDGTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~GTgN~~Ar~lg~~~-----~~~~al~~i~~g~ 177 (359)
+.+|.||+.||||||-.+.+ |++ ..-+|+--+-+|| ||+=. +-.+.+..+.+++
T Consensus 167 ~~~D~iItLGGDGTvL~aS~-LFq------------~~VPPV~sFslGs-------lGFLtpf~f~~f~~~l~~v~~~~ 225 (409)
T KOG2178|consen 167 NRFDLIITLGGDGTVLYASS-LFQ------------RSVPPVLSFSLGS-------LGFLTPFPFANFQEQLARVLNGR 225 (409)
T ss_pred cceeEEEEecCCccEEEehh-hhc------------CCCCCeEEeecCC-------ccccccccHHHHHHHHHHHhcCc
Confidence 46899999999999988876 433 2358888899998 77632 2467788888887
No 50
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=91.21 E-value=1.5 Score=41.63 Aligned_cols=87 Identities=21% Similarity=0.214 Sum_probs=55.3
Q ss_pred CcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEecCCchHHHHHHHHHHHcCCCEEEEEeCCchHHHHHhHhH
Q 018199 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFF 126 (359)
Q Consensus 47 ~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTv~evlngl~ 126 (359)
+|++||..+...+ ..++++...|.+.. .....+..........++++.+...+.|.||++|| |++.++.-.+.
T Consensus 26 ~~~liv~d~~~~~----~~~~~v~~~l~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~d~iIaiGG-Gs~~D~aK~~a 98 (339)
T cd08173 26 GRVLVVTGPTTKS----IAGKKVEALLEDEG--EVDVVIVEDATYEEVEKVESSARDIGADFVIGVGG-GRVIDVAKVAA 98 (339)
T ss_pred CeEEEEECCchHH----HHHHHHHHHHHhcC--CeEEEEeCCCCHHHHHHHHHHhhhcCCCEEEEeCC-chHHHHHHHHH
Confidence 7889999876521 23455666676542 22222222223344555566665668999999998 89999988764
Q ss_pred hCCccccccccccCCcceEEEeeCcC
Q 018199 127 SAGKLVTNHNRESAHSTALGLIPLGT 152 (359)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~lgiiP~GT 152 (359)
. ...+|+..||.=.
T Consensus 99 ~------------~~~~p~i~iPTT~ 112 (339)
T cd08173 99 Y------------KLGIPFISVPTAA 112 (339)
T ss_pred H------------hcCCCEEEecCcc
Confidence 2 2358999999743
No 51
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=90.84 E-value=1.9 Score=41.71 Aligned_cols=111 Identities=20% Similarity=0.213 Sum_probs=62.0
Q ss_pred CCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEe--cC--CchHHHHHHHHHHHcCCCEEEEEeCCchHHHH
Q 018199 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESL--TS--GPSHAIDITREAIKEGADAVIAVGGDGTLHEV 121 (359)
Q Consensus 46 ~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~--t~--~~~~a~~~~~~~~~~~~d~ivv~GGDGTv~ev 121 (359)
.+|++|+..+.+.+ ....++++...|++. ++++.++. .. ......+.++.+...++|.||++|| |++.++
T Consensus 26 ~kr~livtd~~~~~--~~g~~~~v~~~L~~~---gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~ 99 (383)
T cd08186 26 ISKVLLVTGKSAYK--KSGAWDKVEPALDEH---GIEYVLYNKVTPNPTVDQVDEAAKLGREFGAQAVIAIGG-GSPIDS 99 (383)
T ss_pred CCEEEEEcCccHHh--hcChHHHHHHHHHHc---CCeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC-ccHHHH
Confidence 47899998876532 123355677777653 23333332 11 2234555555565678999999999 777777
Q ss_pred HhHhHh---CCcc-ccc---cccccCCcceEEEeeC--cChhhhhhhcCC
Q 018199 122 VNGFFS---AGKL-VTN---HNRESAHSTALGLIPL--GTGSDFARTFGW 162 (359)
Q Consensus 122 lngl~~---~~~~-~~~---~~~~~~~~~~lgiiP~--GTgN~~Ar~lg~ 162 (359)
.-.+.. .+.. ... ........+|+..||. |||--..+.--+
T Consensus 100 aK~ia~~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTTagTGSE~t~~avi 149 (383)
T cd08186 100 AKSAAILLEHPGKTARDLYEFKFTPEKALPLIAINLTHGTGTEVDRFAVA 149 (383)
T ss_pred HHHHHHHHhCCCCcHHHHhCCCcccCCCCCEEEEeCCChhhhhhCCeEEE
Confidence 655432 1100 000 0000123578999998 887766655433
No 52
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=90.17 E-value=2.4 Score=40.81 Aligned_cols=73 Identities=18% Similarity=0.152 Sum_probs=44.3
Q ss_pred CCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEe--cCC--chHHHHHHHHHHHcCCCEEEEEeCCchHHHH
Q 018199 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESL--TSG--PSHAIDITREAIKEGADAVIAVGGDGTLHEV 121 (359)
Q Consensus 46 ~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~--t~~--~~~a~~~~~~~~~~~~d~ivv~GGDGTv~ev 121 (359)
.+|++||..+.+-+ ...++++...|++. ++++.++. ... .....+.++.+...++|.||++|| |++.++
T Consensus 23 ~~r~livt~~~~~~---~g~~~~v~~~L~~~---gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~~D~ 95 (375)
T cd08194 23 GKRPLIVTDKVMVK---LGLVDKLTDSLKKE---GIESAIFDDVVSEPTDESVEEGVKLAKEGGCDVIIALGG-GSPIDT 95 (375)
T ss_pred CCeEEEEcCcchhh---cchHHHHHHHHHHC---CCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHH
Confidence 36899998776531 22455677777653 23333321 112 223455555565678999999999 777776
Q ss_pred HhHh
Q 018199 122 VNGF 125 (359)
Q Consensus 122 lngl 125 (359)
.-.+
T Consensus 96 AKai 99 (375)
T cd08194 96 AKAI 99 (375)
T ss_pred HHHH
Confidence 6544
No 53
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=90.07 E-value=2 Score=40.96 Aligned_cols=86 Identities=15% Similarity=0.132 Sum_probs=53.1
Q ss_pred CcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEecCCchHHHHHHHHHHHcCCCEEEEEeCCchHHHHHhHhH
Q 018199 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFF 126 (359)
Q Consensus 47 ~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTv~evlngl~ 126 (359)
++++||..+.+.. ...+++...|.... .....+....+.....+++..+...+.|.||++|| |++.++.-.+.
T Consensus 35 ~~~livtd~~~~~----~~~~~l~~~l~~~~--~~~~~~~~~~t~~~v~~~~~~~~~~~~d~IIaiGG-Gsv~D~ak~vA 107 (350)
T PRK00843 35 GRALIVTGPTTKK----IAGDRVEENLEDAG--DVEVVIVDEATMEEVEKVEEKAKDVNAGFLIGVGG-GKVIDVAKLAA 107 (350)
T ss_pred CeEEEEECCcHHH----HHHHHHHHHHHhcC--CeeEEeCCCCCHHHHHHHHHHhhccCCCEEEEeCC-chHHHHHHHHH
Confidence 6899999887631 12234555665432 22221222223334555566665567899999998 89999987664
Q ss_pred hCCccccccccccCCcceEEEeeCc
Q 018199 127 SAGKLVTNHNRESAHSTALGLIPLG 151 (359)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~lgiiP~G 151 (359)
. ...+|+..||.=
T Consensus 108 ~------------~rgip~I~IPTT 120 (350)
T PRK00843 108 Y------------RLGIPFISVPTA 120 (350)
T ss_pred H------------hcCCCEEEeCCC
Confidence 1 235789999964
No 54
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=89.50 E-value=2.3 Score=40.12 Aligned_cols=89 Identities=18% Similarity=0.166 Sum_probs=55.3
Q ss_pred CCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEE--ec--CCchHHHHHHHHHHHcCCCEEEEEeCCchHHHH
Q 018199 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICES--LT--SGPSHAIDITREAIKEGADAVIAVGGDGTLHEV 121 (359)
Q Consensus 46 ~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~--~t--~~~~~a~~~~~~~~~~~~d~ivv~GGDGTv~ev 121 (359)
.+|++||..+..-+ ...+++...|.+. ..+.++ .. ..-.+..+.+..+...+.|.||++|| |++.++
T Consensus 23 ~~~~liv~~~~~~~----~~~~~v~~~l~~~----~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIaiGG-Gs~~D~ 93 (332)
T cd07766 23 FDRALVVSDEGVVK----GVGEKVADSLKKL----IAVHIFDGVGPNPTFEEVKEAVERARAAEVDAVIAVGG-GSTLDT 93 (332)
T ss_pred CCeEEEEeCCchhh----hHHHHHHHHHHhc----CcEEEeCCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCC-chHHHH
Confidence 36899998776532 3344566666543 122222 11 12234555666665678999999998 899988
Q ss_pred HhHhHhCCccccccccccCCcceEEEeeC--cCh
Q 018199 122 VNGFFSAGKLVTNHNRESAHSTALGLIPL--GTG 153 (359)
Q Consensus 122 lngl~~~~~~~~~~~~~~~~~~~lgiiP~--GTg 153 (359)
+-.+.... ...+|+..||. ||+
T Consensus 94 aK~ia~~~----------~~~~p~i~iPTt~~tg 117 (332)
T cd07766 94 AKAVAALL----------NRGLPIIIVPTTAATG 117 (332)
T ss_pred HHHHHHHh----------cCCCCEEEEeCCCchh
Confidence 87764321 23689999998 454
No 55
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=89.44 E-value=2.7 Score=40.66 Aligned_cols=106 Identities=21% Similarity=0.243 Sum_probs=57.4
Q ss_pred CcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEec---C-CchHHHHHHHHHHHcCCCEEEEEeCCchHHHHH
Q 018199 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLT---S-GPSHAIDITREAIKEGADAVIAVGGDGTLHEVV 122 (359)
Q Consensus 47 ~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t---~-~~~~a~~~~~~~~~~~~d~ivv~GGDGTv~evl 122 (359)
+|++|+..+...+ ...++++...|.+. ++++.++.- . ...+..+.++.+...++|.||++|| |++.+++
T Consensus 23 ~~~livt~~~~~~---~~~~~~v~~~L~~~---~~~~~~f~~v~~~~~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~a 95 (386)
T cd08191 23 SRALIVTDERMAG---TPVFAELVQALAAA---GVEVEVFDGVLPDLPRSELCDAASAAARAGPDVIIGLGG-GSCIDLA 95 (386)
T ss_pred CeEEEEECcchhh---cchHHHHHHHHHHc---CCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHH
Confidence 7899998765432 23456666677653 233333321 1 1223344455555678999999999 7887777
Q ss_pred hHhHh---CCccccc---cccccCCcceEEEeeC--cChhhhhhh
Q 018199 123 NGFFS---AGKLVTN---HNRESAHSTALGLIPL--GTGSDFART 159 (359)
Q Consensus 123 ngl~~---~~~~~~~---~~~~~~~~~~lgiiP~--GTgN~~Ar~ 159 (359)
-.+.. ++....+ ........+|+..||. |||--..+.
T Consensus 96 K~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTtagTGSE~t~~ 140 (386)
T cd08191 96 KIAGLLLAHGGDVRDYYGEFKVPGPVLPLIAVPTTAGTGSEVTPV 140 (386)
T ss_pred HHHHHHHhCCCCHHHHhCccccCCCCCCEEEEeCCCcchhhhCCe
Confidence 65531 1100000 0001123578999997 565544443
No 56
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=89.39 E-value=3.1 Score=39.84 Aligned_cols=93 Identities=22% Similarity=0.248 Sum_probs=54.9
Q ss_pred CcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEe----cCCchHHHHHHHHHHHcCCC---EEEEEeCCchHH
Q 018199 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESL----TSGPSHAIDITREAIKEGAD---AVIAVGGDGTLH 119 (359)
Q Consensus 47 ~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~----t~~~~~a~~~~~~~~~~~~d---~ivv~GGDGTv~ 119 (359)
++++|+..+... ....+++...|++.. ..+.+.++. ...-....+++..+...+.| .||++|| |++.
T Consensus 24 ~rvlvVtd~~v~----~~~~~~l~~~L~~~g-~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~~dr~~~IIAvGG-Gsv~ 97 (355)
T cd08197 24 DKYLLVTDSNVE----DLYGHRLLEYLREAG-APVELLSVPSGEEHKTLSTLSDLVERALALGATRRSVIVALGG-GVVG 97 (355)
T ss_pred CeEEEEECccHH----HHHHHHHHHHHHhcC-CceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECC-cHHH
Confidence 788999987531 123455666776542 112222221 11223455666666666676 8888887 8999
Q ss_pred HHHhHhHhCCccccccccccCCcceEEEeeC--cChhh
Q 018199 120 EVVNGFFSAGKLVTNHNRESAHSTALGLIPL--GTGSD 155 (359)
Q Consensus 120 evlngl~~~~~~~~~~~~~~~~~~~lgiiP~--GTgN~ 155 (359)
++.-.+.... ...+|+..||. |++.|
T Consensus 98 D~ak~~A~~~----------~rgip~I~IPTTlla~~d 125 (355)
T cd08197 98 NIAGLLAALL----------FRGIRLVHIPTTLLAQSD 125 (355)
T ss_pred HHHHHHHHHh----------ccCCCEEEecCccccccc
Confidence 9887653211 23589999998 44433
No 57
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=89.20 E-value=2.2 Score=41.12 Aligned_cols=108 Identities=17% Similarity=0.184 Sum_probs=58.3
Q ss_pred CcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEe--c-C-CchHHHHHHHHHHHcCCCEEEEEeCCchHHHHH
Q 018199 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESL--T-S-GPSHAIDITREAIKEGADAVIAVGGDGTLHEVV 122 (359)
Q Consensus 47 ~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~--t-~-~~~~a~~~~~~~~~~~~d~ivv~GGDGTv~evl 122 (359)
+|++|+..+..-+ ...++++...|++. ++++.++. . + ......+.++.+...++|.||++|| |++.++.
T Consensus 29 ~~~lvv~~~~~~~---~~~~~~v~~~L~~~---~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GS~iD~a 101 (377)
T cd08176 29 KKALIVTDKGLVK---IGVVEKVTDVLDEA---GIDYVIYDGVKPNPTITNVKDGLAVFKKEGCDFIISIGG-GSPHDCA 101 (377)
T ss_pred CeEEEECCchHhh---cCcHHHHHHHHHHc---CCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-cHHHHHH
Confidence 6888887765422 13455677777653 23333331 1 1 1223445555555678999999999 7777766
Q ss_pred hHhH---hCCccccc---cccccCCcceEEEeeC--cChhhhhhhcC
Q 018199 123 NGFF---SAGKLVTN---HNRESAHSTALGLIPL--GTGSDFARTFG 161 (359)
Q Consensus 123 ngl~---~~~~~~~~---~~~~~~~~~~lgiiP~--GTgN~~Ar~lg 161 (359)
-.+. ..+....+ ........+|+..||. |||--..+.--
T Consensus 102 K~ia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTtagTgSe~t~~av 148 (377)
T cd08176 102 KAIGIVATNGGDIRDYEGVAKSKKPAVPIVAINTTAGTASEVTINYV 148 (377)
T ss_pred HHHHHHHhCCCCHHHHhCcCccCCCCCCEEEeCCCCcchhccCCcEE
Confidence 5442 11100000 0001134579999997 77665544433
No 58
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=88.98 E-value=2.2 Score=41.27 Aligned_cols=109 Identities=14% Similarity=0.194 Sum_probs=58.6
Q ss_pred CCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEe---cCC-chHHHHHHHHHHHcCCCEEEEEeCCchHHHH
Q 018199 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESL---TSG-PSHAIDITREAIKEGADAVIAVGGDGTLHEV 121 (359)
Q Consensus 46 ~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~---t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGTv~ev 121 (359)
.+|++||.-+.+... ...++++...|+.. ++++.++. .+. .....+.++.+...++|.||++|| |++.++
T Consensus 28 ~~r~livt~~~~~~~--~~~~~~v~~~L~~~---g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~ 101 (382)
T cd08187 28 GKKVLLVYGGGSIKK--NGLYDRVIASLKEA---GIEVVELGGVEPNPRLETVREGIELCKEEKVDFILAVGG-GSVIDS 101 (382)
T ss_pred CCEEEEEeCCcHHHh--cCcHHHHHHHHHHc---CCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEEeCC-hHHHHH
Confidence 378888877655321 22345666677653 23333221 111 133445555555678999999999 888877
Q ss_pred HhHhHh---CCcccccc---ccccCCcceEEEeeC--cChhhhhhhc
Q 018199 122 VNGFFS---AGKLVTNH---NRESAHSTALGLIPL--GTGSDFARTF 160 (359)
Q Consensus 122 lngl~~---~~~~~~~~---~~~~~~~~~lgiiP~--GTgN~~Ar~l 160 (359)
.-.+.. ......+. .......+|+..||. |||--..+.-
T Consensus 102 aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTTagTGsE~t~~a 148 (382)
T cd08187 102 AKAIAAGAPYDGDVWDFFTGKAKIEKALPVGTVLTLAATGSEMNGGA 148 (382)
T ss_pred HHHHHhHhhCCCCHHHHhcccCCCCCCCCEEEEeCCCchhhccCCCE
Confidence 765422 10000000 001124579999997 6665444443
No 59
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=88.79 E-value=4 Score=39.03 Aligned_cols=107 Identities=18% Similarity=0.183 Sum_probs=59.3
Q ss_pred CcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEe--cC--CchHHHHHHHHHHHcCCCEEEEEeCCchHHHHH
Q 018199 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESL--TS--GPSHAIDITREAIKEGADAVIAVGGDGTLHEVV 122 (359)
Q Consensus 47 ~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~--t~--~~~~a~~~~~~~~~~~~d~ivv~GGDGTv~evl 122 (359)
+|++|+.-+.+-.. ...++++...|.+. +.++.++. .. .-....+.++.+...++|.||++|| |++-++.
T Consensus 26 ~r~lvVt~~~~~~~--~g~~~~v~~~L~~~---g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GSviD~a 99 (357)
T cd08181 26 KRALIVTGKSSAKK--NGSLDDVTKALEEL---GIEYEIFDEVEENPSLETIMEAVEIAKKFNADFVIGIGG-GSPLDAA 99 (357)
T ss_pred CEEEEEeCCchHhh--cCcHHHHHHHHHHc---CCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHH
Confidence 78999988765221 12345566667653 22333331 11 1233555566666678999999999 7777777
Q ss_pred hHhH---hCCcccccc--ccccCCcceEEEeeC--cChhhhhhh
Q 018199 123 NGFF---SAGKLVTNH--NRESAHSTALGLIPL--GTGSDFART 159 (359)
Q Consensus 123 ngl~---~~~~~~~~~--~~~~~~~~~lgiiP~--GTgN~~Ar~ 159 (359)
-.+. ..+....+. .......+|+..||. |||--....
T Consensus 100 K~ia~~~~~~~~~~~~~~~~~~~~~~P~i~VPTtagTGsE~t~~ 143 (357)
T cd08181 100 KAIAVLIKNPDLKVELYFRSKYLKALPVVAIPTTAGTGSEVTQY 143 (357)
T ss_pred HHHHHHHhCCCcHHHHhcccccCCCCCEEEEeCCCcchhhhCCe
Confidence 6442 111000000 001124579999997 776666554
No 60
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=88.62 E-value=3.3 Score=39.13 Aligned_cols=86 Identities=19% Similarity=0.190 Sum_probs=52.4
Q ss_pred CCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEecCCchHHHHHHHHHHHc-CCCEEEEEeCCchHHHHHhH
Q 018199 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKE-GADAVIAVGGDGTLHEVVNG 124 (359)
Q Consensus 46 ~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~-~~d~ivv~GGDGTv~evlng 124 (359)
.+|++||..+.+ ++++...|++... ..+..+.........++.+.+... +.|.||++|| |++.++.-.
T Consensus 25 ~~r~livtd~~~--------~~~~~~~L~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~d~iIaiGG-Gsv~D~aK~ 93 (331)
T cd08174 25 FGRVAVVSGPGV--------GEQVAESLKTSFS--AEVEAVEEVSNSDAEEIGARARSIPNVDAVVGIGG-GKVIDVAKY 93 (331)
T ss_pred CCceEEEECCcH--------HHHHHHHHHhccC--ceEEEecCCCccCHHHHHHHHHhccCCCEEEEeCC-cHHHHHHHH
Confidence 378999998765 3455566655321 122222222223344444444333 5899999998 999999977
Q ss_pred hHhCCccccccccccCCcceEEEeeCcChh
Q 018199 125 FFSAGKLVTNHNRESAHSTALGLIPLGTGS 154 (359)
Q Consensus 125 l~~~~~~~~~~~~~~~~~~~lgiiP~GTgN 154 (359)
+.. ...+|+..+|.=.++
T Consensus 94 vA~------------~~~~p~i~vPTt~~t 111 (331)
T cd08174 94 AAF------------LRGIPLSVPTTNLND 111 (331)
T ss_pred HHh------------hcCCCEEEecCcccc
Confidence 642 346899999974433
No 61
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=88.59 E-value=2 Score=40.90 Aligned_cols=84 Identities=15% Similarity=0.204 Sum_probs=51.8
Q ss_pred CcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEE--ecCC--chHHHHHHHHHHHcCCCEEEEEeCCchHHHHH
Q 018199 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICES--LTSG--PSHAIDITREAIKEGADAVIAVGGDGTLHEVV 122 (359)
Q Consensus 47 ~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~--~t~~--~~~a~~~~~~~~~~~~d~ivv~GGDGTv~evl 122 (359)
+|++||..+.+- ...++++...|++. ++++..+ .... .....+.++.+...++|.||++|| |++.++.
T Consensus 23 ~r~liv~d~~~~----~~~~~~v~~~l~~~---~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~iiavGG-Gs~~D~a 94 (345)
T cd08171 23 KKVVVIGGKTAL----AAAKDKIKAALEQS---GIEITDFIWYGGESTYENVERLKKNPAVQEADMIFAVGG-GKAIDTV 94 (345)
T ss_pred CEEEEEeCHHHH----HHHHHHHHHHHHHC---CCeEEEEEecCCCCCHHHHHHHHHHHhhcCCCEEEEeCC-cHHHHHH
Confidence 788998876542 22355666777653 2222221 1221 223344444444568999999999 8999988
Q ss_pred hHhHhCCccccccccccCCcceEEEeeC
Q 018199 123 NGFFSAGKLVTNHNRESAHSTALGLIPL 150 (359)
Q Consensus 123 ngl~~~~~~~~~~~~~~~~~~~lgiiP~ 150 (359)
-.+.. ...+|+..||.
T Consensus 95 K~ia~------------~~~~p~i~VPT 110 (345)
T cd08171 95 KVLAD------------KLGKPVFTFPT 110 (345)
T ss_pred HHHHH------------HcCCCEEEecC
Confidence 77642 12578999997
No 62
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=88.12 E-value=3.3 Score=39.89 Aligned_cols=107 Identities=15% Similarity=0.173 Sum_probs=56.2
Q ss_pred CcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEec---C-CchHHHHHHHHHHHcCCCEEEEEeCCchHHHHH
Q 018199 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLT---S-GPSHAIDITREAIKEGADAVIAVGGDGTLHEVV 122 (359)
Q Consensus 47 ~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t---~-~~~~a~~~~~~~~~~~~d~ivv~GGDGTv~evl 122 (359)
+|++||..+.+-+ ....++++...|++. ++++.++.. + ......+.++.+...++|.||++|| |++-++.
T Consensus 24 ~r~livt~~~~~~--~~g~~~~v~~~L~~~---g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GSviD~A 97 (375)
T cd08179 24 KKAFIVTGGGSMK--KFGFLDKVEAYLKEA---GIEVEVFEGVEPDPSVETVLKGAEAMREFEPDWIIALGG-GSPIDAA 97 (375)
T ss_pred CeEEEEeCchHHH--hCChHHHHHHHHHHc---CCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-ccHHHHH
Confidence 6888887665421 123355666777643 233433321 1 2223445555555678999999999 6666666
Q ss_pred hHhH---hCCcc-ccc-----cccccCCcceEEEeeC--cChhhhhhh
Q 018199 123 NGFF---SAGKL-VTN-----HNRESAHSTALGLIPL--GTGSDFART 159 (359)
Q Consensus 123 ngl~---~~~~~-~~~-----~~~~~~~~~~lgiiP~--GTgN~~Ar~ 159 (359)
-.+. ..+.. ... ........+|+..||. |||--....
T Consensus 98 K~ia~~~~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTtagTGSE~t~~ 145 (375)
T cd08179 98 KAMWIFYEYPELTFEDIVKPFTLPELRNKARFCAIPSTSGTATEVTAF 145 (375)
T ss_pred HHHHHHHhCCCcCHHHHhccccccccCCCCCEEEeCCCCchhHhhCCe
Confidence 5442 11100 000 0000123568999997 676555443
No 63
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=87.79 E-value=2.1 Score=41.09 Aligned_cols=107 Identities=21% Similarity=0.226 Sum_probs=58.2
Q ss_pred CCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEe--c--CCchHHHHHHHHHHHcCCCEEEEEeCCchHHHH
Q 018199 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESL--T--SGPSHAIDITREAIKEGADAVIAVGGDGTLHEV 121 (359)
Q Consensus 46 ~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~--t--~~~~~a~~~~~~~~~~~~d~ivv~GGDGTv~ev 121 (359)
.++++|+..+.+-+ ...++++...|.+. +.++.++. + .......+.++.+...+.|.||++|| |++.++
T Consensus 23 ~~~~lvv~~~~~~~---~~~~~~v~~~L~~~---~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IiaiGG-Gs~~D~ 95 (370)
T cd08551 23 GRKALIVTDPGLVK---TGVLDKVIDSLKEA---GIEVVIFDGVEPNPTLSNVDAAVAAYREEGCDGVIAVGG-GSVLDT 95 (370)
T ss_pred CCeEEEEeCcchhh---CccHHHHHHHHHHc---CCeEEEECCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHH
Confidence 37889998876633 23345666677653 22333221 1 12234556666665678999999999 777777
Q ss_pred HhHhHh---CCccccc---cccccCCcceEEEeeC--cChhhhhhh
Q 018199 122 VNGFFS---AGKLVTN---HNRESAHSTALGLIPL--GTGSDFART 159 (359)
Q Consensus 122 lngl~~---~~~~~~~---~~~~~~~~~~lgiiP~--GTgN~~Ar~ 159 (359)
.-.+.. ......+ ........+|+..||. |||--....
T Consensus 96 AK~va~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt~gtgse~t~~ 141 (370)
T cd08551 96 AKAIALLATNPGDIWDYEGGKPVIKPALPLIAIPTTAGTGSEVTPF 141 (370)
T ss_pred HHHHHHHHhCCCcHHHHhCcccccCCCCCEEEecCCCcchhhcCCe
Confidence 655421 1100000 0001123678999998 555433333
No 64
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=87.68 E-value=1.9 Score=41.08 Aligned_cols=92 Identities=15% Similarity=0.151 Sum_probs=54.2
Q ss_pred CcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEecCCc-hHHHHHHHHHHHcCCCEEEEEeCCchHHHHHhHh
Q 018199 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGP-SHAIDITREAIKEGADAVIAVGGDGTLHEVVNGF 125 (359)
Q Consensus 47 ~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t~~~-~~a~~~~~~~~~~~~d~ivv~GGDGTv~evlngl 125 (359)
+|++|+.-+.+. ...++++...|.+.. ..+.+..+..+.. .+..+.++.+...+.|.||++|| |++-++.-.+
T Consensus 23 ~r~livt~~~~~----~~~~~~v~~~L~~~~-i~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GS~iD~aK~i 96 (351)
T cd08170 23 KRALIIADEFVL----DLVGAKIEESLAAAG-IDARFEVFGGECTRAEIERLAEIARDNGADVVIGIGG-GKTLDTAKAV 96 (351)
T ss_pred CeEEEEECHHHH----HHHHHHHHHHHHhCC-CeEEEEEeCCcCCHHHHHHHHHHHhhcCCCEEEEecC-chhhHHHHHH
Confidence 788888744332 234556666776531 1111222222222 33445555555568999999999 8888888776
Q ss_pred HhCCccccccccccCCcceEEEeeC--cChhhh
Q 018199 126 FSAGKLVTNHNRESAHSTALGLIPL--GTGSDF 156 (359)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~lgiiP~--GTgN~~ 156 (359)
.. ...+|+..||. |||--.
T Consensus 97 a~------------~~~~P~iaIPTTagTgse~ 117 (351)
T cd08170 97 AD------------YLGAPVVIVPTIASTDAPT 117 (351)
T ss_pred HH------------HcCCCEEEeCCccccCccc
Confidence 42 13578999997 554433
No 65
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=87.49 E-value=4.2 Score=39.24 Aligned_cols=110 Identities=14% Similarity=0.151 Sum_probs=60.7
Q ss_pred CcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEe--cC--CchHHHHHHHHHHHcCCCEEEEEeCCchHHHHH
Q 018199 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESL--TS--GPSHAIDITREAIKEGADAVIAVGGDGTLHEVV 122 (359)
Q Consensus 47 ~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~--t~--~~~~a~~~~~~~~~~~~d~ivv~GGDGTv~evl 122 (359)
+|++||..+.+- +....++++...|++. ++++.++. .. .-....+.++.+...++|.||++|| |++-++.
T Consensus 26 ~r~livt~~~~~--~~~g~~~~v~~~L~~~---~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiavGG-GS~iD~a 99 (380)
T cd08185 26 KKALIVTGNGSS--KKTGYLDRVIELLKQA---GVEVVVFDKVEPNPTTTTVMEGAALAREEGCDFVVGLGG-GSSMDTA 99 (380)
T ss_pred CeEEEEeCCCch--hhccHHHHHHHHHHHc---CCeEEEeCCccCCCCHHHHHHHHHHHHHcCCCEEEEeCC-ccHHHHH
Confidence 789999987652 1124456677777653 23333221 11 2233445555555678999999999 7777766
Q ss_pred hHhHh---CCcccccc-----c---cccCCcceEEEeeC--cChhhhhhhcCC
Q 018199 123 NGFFS---AGKLVTNH-----N---RESAHSTALGLIPL--GTGSDFARTFGW 162 (359)
Q Consensus 123 ngl~~---~~~~~~~~-----~---~~~~~~~~lgiiP~--GTgN~~Ar~lg~ 162 (359)
-.+.. .+....+. . ......+|+..||. |||--..+.--+
T Consensus 100 K~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTtagTGSE~t~~avi 152 (380)
T cd08185 100 KAIAFMAANEGDYWDYIFGGTGKGKPPPEKALPIIAITTTAGTGSEADPWAVI 152 (380)
T ss_pred HHHHHHhhCCCCHHHHhcccccccccCCCCCCCEEEEcCCChhhhccCCeEEE
Confidence 55421 11000000 0 01124689999996 776655554443
No 66
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=87.40 E-value=5.4 Score=38.58 Aligned_cols=110 Identities=16% Similarity=0.137 Sum_probs=58.4
Q ss_pred CCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEecC----CchHHHHHHHHHHHcCCCEEEEEeCCchHHHH
Q 018199 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTS----GPSHAIDITREAIKEGADAVIAVGGDGTLHEV 121 (359)
Q Consensus 46 ~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t~----~~~~a~~~~~~~~~~~~d~ivv~GGDGTv~ev 121 (359)
.++++|+.-+.. +....++++...|++. ++.+.++.-. ......+.++.+...+.|.||++|| |++-++
T Consensus 31 ~~~~livt~~~~---~~~g~~~~v~~~L~~~---~i~~~~f~~v~~np~~~~v~~~~~~~~~~~~D~IiaiGG-GS~iD~ 103 (383)
T PRK09860 31 FTRTLIVTDNML---TKLGMAGDVQKALEER---NIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVISLGG-GSPHDC 103 (383)
T ss_pred CCEEEEEcCcch---hhCccHHHHHHHHHHc---CCeEEEeCCCCCCcCHHHHHHHHHHHHHcCCCEEEEeCC-chHHHH
Confidence 368888876432 1123456777777753 2333333211 1234445555555678999999999 555554
Q ss_pred HhHh---HhCCcccccc---ccccCCcceEEEeeC--cChhhhhhhcCC
Q 018199 122 VNGF---FSAGKLVTNH---NRESAHSTALGLIPL--GTGSDFARTFGW 162 (359)
Q Consensus 122 lngl---~~~~~~~~~~---~~~~~~~~~lgiiP~--GTgN~~Ar~lg~ 162 (359)
.-.+ +..+....+. .......+|+..||. |||--..+.--+
T Consensus 104 AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTTagTGSE~t~~avi 152 (383)
T PRK09860 104 AKGIALVAANGGDIRDYEGVDRSAKPQLPMIAINTTAGTASEMTRFCII 152 (383)
T ss_pred HHHHHHHHHCCCCHHHHhCcCccCCCCCCEEEEeCCCcchhccCceEEE
Confidence 4433 2221000000 001124579999997 787666555444
No 67
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=87.34 E-value=2.6 Score=40.18 Aligned_cols=86 Identities=14% Similarity=0.189 Sum_probs=53.0
Q ss_pred CcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEecC-CchHHHHHHHHHHHcCCCEEEEEeCCchHHHHHhHh
Q 018199 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTS-GPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGF 125 (359)
Q Consensus 47 ~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t~-~~~~a~~~~~~~~~~~~d~ivv~GGDGTv~evlngl 125 (359)
+|++||..+.+-+ +..+++...|++.. ....+.++..+ ......+.++.+...++|.||++|| |++.++.-.+
T Consensus 23 ~~~liv~~~~~~~----~~~~~v~~~l~~~~-i~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGG-Gs~~D~aK~i 96 (349)
T cd08550 23 SKVAVVGGKTVLK----KSRPRFEAALAKSI-IVVDVIVFGGECSTEEVVKALCGAEEQEADVIIGVGG-GKTLDTAKAV 96 (349)
T ss_pred CeEEEEEChHHHH----HHHHHHHHHHHhcC-CeeEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEecC-cHHHHHHHHH
Confidence 6788888766522 33456666676531 11122222222 2234445555555578999999998 8999988876
Q ss_pred HhCCccccccccccCCcceEEEeeC
Q 018199 126 FSAGKLVTNHNRESAHSTALGLIPL 150 (359)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~lgiiP~ 150 (359)
.. ...+|+..||.
T Consensus 97 a~------------~~~~p~i~VPT 109 (349)
T cd08550 97 AD------------RLDKPIVIVPT 109 (349)
T ss_pred HH------------HcCCCEEEeCC
Confidence 42 23578999997
No 68
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=87.15 E-value=3.7 Score=39.06 Aligned_cols=89 Identities=15% Similarity=0.181 Sum_probs=52.5
Q ss_pred CCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEe----cCCchHHHHHHHHHHHcCC---CEEEEEeCCchH
Q 018199 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESL----TSGPSHAIDITREAIKEGA---DAVIAVGGDGTL 118 (359)
Q Consensus 46 ~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~----t~~~~~a~~~~~~~~~~~~---d~ivv~GGDGTv 118 (359)
.++++||.++.... ...+++...|.... ....+.++. ...-....++++.+...+. |.||++|| |++
T Consensus 24 ~~~~livtd~~~~~----~~~~~l~~~L~~~g-~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIaiGG-Gsv 97 (345)
T cd08195 24 GSKILIVTDENVAP----LYLEKLKAALEAAG-FEVEVIVIPAGEASKSLETLEKLYDALLEAGLDRKSLIIALGG-GVV 97 (345)
T ss_pred CCeEEEEECCchHH----HHHHHHHHHHHhcC-CceEEEEeCCCCCcCCHHHHHHHHHHHHHcCCCCCCeEEEECC-hHH
Confidence 47899999876532 23455666666531 112222222 1223445555555555555 89999988 888
Q ss_pred HHHHhHhHhCCccccccccccCCcceEEEeeC
Q 018199 119 HEVVNGFFSAGKLVTNHNRESAHSTALGLIPL 150 (359)
Q Consensus 119 ~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~ 150 (359)
.++.-.+... ....+|+..+|.
T Consensus 98 ~D~ak~vA~~----------~~rgip~i~VPT 119 (345)
T cd08195 98 GDLAGFVAAT----------YMRGIDFIQIPT 119 (345)
T ss_pred HhHHHHHHHH----------HhcCCCeEEcch
Confidence 8888665321 123578888886
No 69
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=87.09 E-value=4.1 Score=38.50 Aligned_cols=96 Identities=20% Similarity=0.258 Sum_probs=54.4
Q ss_pred CcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEE--ecCC--chHHHHHHHHHHHcCCCEEEEEeCCchHHHHH
Q 018199 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICES--LTSG--PSHAIDITREAIKEGADAVIAVGGDGTLHEVV 122 (359)
Q Consensus 47 ~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~--~t~~--~~~a~~~~~~~~~~~~d~ivv~GGDGTv~evl 122 (359)
+|++||..+...+ ...++++...|.+. ..+.++ .... .....+.++.+...++|.||++|| |++-++.
T Consensus 23 ~~~lvv~~~~~~~---~g~~~~v~~~l~~~----~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IiaiGG-Gs~~D~a 94 (332)
T cd08180 23 KRVLIVTDPFMVK---SGMLDKVTDHLDSS----IEVEIFSDVVPDPPIEVVAKGIKKFLDFKPDIVIALGG-GSAIDAA 94 (332)
T ss_pred CeEEEEeCchhhh---CccHHHHHHHHHhc----CcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEECC-chHHHHH
Confidence 7899999875422 12355566666543 122222 1112 233445555555678999999999 7777777
Q ss_pred hHh--HhCCccccccccccCCcceEEEeeC--cChhhhh
Q 018199 123 NGF--FSAGKLVTNHNRESAHSTALGLIPL--GTGSDFA 157 (359)
Q Consensus 123 ngl--~~~~~~~~~~~~~~~~~~~lgiiP~--GTgN~~A 157 (359)
-.+ +... ......+|+..+|. |||--..
T Consensus 95 Ka~a~~~~~-------~~~~~~~p~i~VPTtagtgse~t 126 (332)
T cd08180 95 KAIIYFAKK-------LGKKKKPLFIAIPTTSGTGSEVT 126 (332)
T ss_pred HHHHHHHhC-------CCCCCCCCEEEeCCCCcchHhhC
Confidence 653 1110 01234589999997 6654443
No 70
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=86.95 E-value=2 Score=40.92 Aligned_cols=88 Identities=17% Similarity=0.250 Sum_probs=55.1
Q ss_pred CcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEe-cCCchHHHHHHHHHHHcCCCEEEEEeCCchHHHHHhHh
Q 018199 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESL-TSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGF 125 (359)
Q Consensus 47 ~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~-t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTv~evlngl 125 (359)
+|++||..+..- ...++++...|+.. ...+.++. ........+.+..+...++|.||++|| |++.++.-.+
T Consensus 24 ~~~liv~d~~~~----~~~~~~l~~~L~~~---~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~iIavGG-Gs~~D~aK~i 95 (347)
T cd08172 24 KRPLIVTGPRSW----AAAKPYLPESLAAG---EAFVLRYDGECSEENIERLAAQAKENGADVIIGIGG-GKVLDTAKAV 95 (347)
T ss_pred CeEEEEECHHHH----HHHHHHHHHHHhcC---eEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-cHHHHHHHHH
Confidence 789999987651 23344555555321 22232222 133345556666666678999999998 8999998877
Q ss_pred HhCCccccccccccCCcceEEEeeC--cChh
Q 018199 126 FSAGKLVTNHNRESAHSTALGLIPL--GTGS 154 (359)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~lgiiP~--GTgN 154 (359)
.. ...+|+..||. ||+-
T Consensus 96 a~------------~~~~p~i~VPTT~gtgs 114 (347)
T cd08172 96 AD------------RLGVPVITVPTLAATCA 114 (347)
T ss_pred HH------------HhCCCEEEecCccccCc
Confidence 42 12578999997 4543
No 71
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=86.82 E-value=2.4 Score=38.41 Aligned_cols=92 Identities=16% Similarity=0.206 Sum_probs=48.6
Q ss_pred CCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEe----cCCchHHHHHHHHHHHcCCCEEEEEeCCchHHHH
Q 018199 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESL----TSGPSHAIDITREAIKEGADAVIAVGGDGTLHEV 121 (359)
Q Consensus 46 ~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~----t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTv~ev 121 (359)
.+++++|..++- ....-+++...|+.. ++++.+.. .....+..++..++...++|.||.+|| ||++++
T Consensus 19 ~~~~lvv~d~~t----~~~~g~~v~~~l~~~---g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vGg-G~i~D~ 90 (250)
T PF13685_consen 19 LKKVLVVTDENT----YKAAGEKVEESLKSA---GIEVAVIEEFVGDADEDEVEKLVEALRPKDADLIIGVGG-GTIIDI 90 (250)
T ss_dssp -SEEEEEEETTH----HHHHHHHHHHHHHTT---T-EEEEEE-EE---BHHHHHHHHTTS--TT--EEEEEES-HHHHHH
T ss_pred CCcEEEEEcCCH----HHHHHHHHHHHHHHc---CCeEEEEecCCCCCCHHHHHHHHHHhcccCCCEEEEeCC-cHHHHH
Confidence 468899887752 111223455666643 23333221 222223334443443467899999998 999999
Q ss_pred HhHhHhCCccccccccccCCcceEEEeeCc-Chhhhh
Q 018199 122 VNGFFSAGKLVTNHNRESAHSTALGLIPLG-TGSDFA 157 (359)
Q Consensus 122 lngl~~~~~~~~~~~~~~~~~~~lgiiP~G-TgN~~A 157 (359)
.--... ..+.|+..+|.= |.|.|+
T Consensus 91 ~K~~A~------------~~~~p~isVPTa~S~DG~a 115 (250)
T PF13685_consen 91 AKYAAF------------ELGIPFISVPTAASHDGFA 115 (250)
T ss_dssp HHHHHH------------HHT--EEEEES--SSGGGT
T ss_pred HHHHHH------------hcCCCEEEecccccccccc
Confidence 987643 357899999985 444444
No 72
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=86.61 E-value=6.4 Score=38.05 Aligned_cols=110 Identities=16% Similarity=0.141 Sum_probs=58.5
Q ss_pred CCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEe--cCCc--hHHHHHHHHHHHcCCCEEEEEeCCchHHHH
Q 018199 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESL--TSGP--SHAIDITREAIKEGADAVIAVGGDGTLHEV 121 (359)
Q Consensus 46 ~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~--t~~~--~~a~~~~~~~~~~~~d~ivv~GGDGTv~ev 121 (359)
.+|++|+..+..-+ ...++++...|++. ++++.++. ...+ +...+.++.+...++|.||++|| |++-++
T Consensus 30 ~~~~lvvtd~~~~~---~g~~~~v~~~L~~~---g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~ 102 (382)
T PRK10624 30 FKKALIVTDKTLVK---CGVVAKVTDVLDAA---GLAYEIYDGVKPNPTIEVVKEGVEVFKASGADYLIAIGG-GSPQDT 102 (382)
T ss_pred CCEEEEEeCcchhh---CcchHHHHHHHHHC---CCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-hHHHHH
Confidence 36889988764321 22456677777654 23333331 1122 33444555555678999999999 777777
Q ss_pred HhHh---HhCCc--cccc---cccccCCcceEEEeeC--cChhhhhhhcCC
Q 018199 122 VNGF---FSAGK--LVTN---HNRESAHSTALGLIPL--GTGSDFARTFGW 162 (359)
Q Consensus 122 lngl---~~~~~--~~~~---~~~~~~~~~~lgiiP~--GTgN~~Ar~lg~ 162 (359)
.-.+ +..+. ...+ ........+|+..||. |||--..+..-+
T Consensus 103 aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTTagTGse~t~~avi 153 (382)
T PRK10624 103 CKAIGIISNNPEFADVRSLEGVAPTKKPSVPIIAIPTTAGTAAEVTINYVI 153 (382)
T ss_pred HHHHHHHHHCCCCCCHHHHhCcCcccCCCCCEEEECCCCchhhhhcceeee
Confidence 7533 21110 0000 0001124579999997 666555544433
No 73
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=86.32 E-value=4.7 Score=38.42 Aligned_cols=93 Identities=22% Similarity=0.163 Sum_probs=53.8
Q ss_pred CCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEe----cCCchHHHHHHHHHHH---cCCCEEEEEeCCchH
Q 018199 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESL----TSGPSHAIDITREAIK---EGADAVIAVGGDGTL 118 (359)
Q Consensus 46 ~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~----t~~~~~a~~~~~~~~~---~~~d~ivv~GGDGTv 118 (359)
.++++++..+...+ ...+++...|+.. ....+.++. ..+-....+++..+.. .+.|.||++|| |++
T Consensus 23 ~~k~livtd~~v~~----~~~~~v~~~L~~~--~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~~~r~d~IIaiGG-Gsv 95 (344)
T cd08169 23 FDQYFFISDSGVAD----LIAHYIAEYLSKI--LPVHILVIEGGEEYKTFETVTRILERAIALGANRRTAIVAVGG-GAT 95 (344)
T ss_pred CCeEEEEECccHHH----HHHHHHHHHHHhh--cCceEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECC-cHH
Confidence 47889998875421 2345566666542 122333332 1122344455445443 34899999987 888
Q ss_pred HHHHhHhHhCCccccccccccCCcceEEEeeC--cChhh
Q 018199 119 HEVVNGFFSAGKLVTNHNRESAHSTALGLIPL--GTGSD 155 (359)
Q Consensus 119 ~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~--GTgN~ 155 (359)
.++.-.+.... ...+|+..+|. ++++|
T Consensus 96 ~D~ak~vA~~~----------~rgip~i~VPTTlla~~d 124 (344)
T cd08169 96 GDVAGFVASTL----------FRGIAFIRVPTTLLAQSD 124 (344)
T ss_pred HHHHHHHHHHh----------ccCCcEEEecCCcccccc
Confidence 88886654211 23579999997 45554
No 74
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=85.95 E-value=4.2 Score=39.58 Aligned_cols=73 Identities=14% Similarity=0.075 Sum_probs=42.8
Q ss_pred CCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEe--c--CCchHHHHHHHHHHHcCCCEEEEEeCCchHHHH
Q 018199 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESL--T--SGPSHAIDITREAIKEGADAVIAVGGDGTLHEV 121 (359)
Q Consensus 46 ~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~--t--~~~~~a~~~~~~~~~~~~d~ivv~GGDGTv~ev 121 (359)
.+|++||.-+... ....++++...|++. ++++.++. . .......+.+..+...++|.||++|| |++-++
T Consensus 21 ~~k~liVtd~~~~---~~g~~~~v~~~L~~~---gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~ 93 (398)
T cd08178 21 KKRAFIVTDRFMV---KLGYVDKVIDVLKRR---GVETEVFSDVEPDPSLETVRKGLELMNSFKPDTIIALGG-GSPMDA 93 (398)
T ss_pred CCeEEEEcChhHH---hCccHHHHHHHHHHC---CCeEEEecCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-ccHHHH
Confidence 3788888765421 122455677777654 23333321 1 12234455555555678999999999 677666
Q ss_pred HhHh
Q 018199 122 VNGF 125 (359)
Q Consensus 122 lngl 125 (359)
.-.+
T Consensus 94 AK~i 97 (398)
T cd08178 94 AKIM 97 (398)
T ss_pred HHHH
Confidence 6554
No 75
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=85.75 E-value=6.4 Score=37.39 Aligned_cols=89 Identities=16% Similarity=0.182 Sum_probs=51.2
Q ss_pred CCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEe----cCCchHHHHHHHHHHHcC---CCEEEEEeCCchH
Q 018199 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESL----TSGPSHAIDITREAIKEG---ADAVIAVGGDGTL 118 (359)
Q Consensus 46 ~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~----t~~~~~a~~~~~~~~~~~---~d~ivv~GGDGTv 118 (359)
.+|++||.++..- ....+++.+.|++.. ....+..+. ...-....++++.+...+ .|.||++|| |++
T Consensus 20 ~~~~livtd~~~~----~~~~~~v~~~L~~~g-~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIavGG-Gsv 93 (344)
T TIGR01357 20 PSKLVIITDETVA----DLYADKLLEALQALG-YNVLKLTVPDGEESKSLETVQRLYDQLLEAGLDRSSTIIALGG-GVV 93 (344)
T ss_pred CCeEEEEECCchH----HHHHHHHHHHHHhcC-CceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEEcC-hHH
Confidence 3789999987652 123456666776531 111111221 112234455555554444 489999988 888
Q ss_pred HHHHhHhHhCCccccccccccCCcceEEEeeC
Q 018199 119 HEVVNGFFSAGKLVTNHNRESAHSTALGLIPL 150 (359)
Q Consensus 119 ~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~ 150 (359)
.+++-.+... ....+|+..||.
T Consensus 94 ~D~aK~iA~~----------~~~~~p~i~VPT 115 (344)
T TIGR01357 94 GDLAGFVAAT----------YMRGIRFIQVPT 115 (344)
T ss_pred HHHHHHHHHH----------HccCCCEEEecC
Confidence 8888766321 124578999997
No 76
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=84.33 E-value=4.4 Score=39.03 Aligned_cols=73 Identities=18% Similarity=0.214 Sum_probs=42.2
Q ss_pred CCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEe--cCCc--hHHHHHHHHHHHcCCCEEEEEeCCchHHHH
Q 018199 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESL--TSGP--SHAIDITREAIKEGADAVIAVGGDGTLHEV 121 (359)
Q Consensus 46 ~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~--t~~~--~~a~~~~~~~~~~~~d~ivv~GGDGTv~ev 121 (359)
.+|++|+..+..-+ ...++++...|.+. ++++.++. ...+ ....+.++.+...+.|.||++|| |++-++
T Consensus 26 ~~~~lvvt~~~~~~---~g~~~~v~~~L~~~---g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGG-GS~~D~ 98 (374)
T cd08189 26 VKKVLIVTDKGLVK---LGLLDKVLEALEGA---GIEYAVYDGVPPDPTIENVEAGLALYRENGCDAILAVGG-GSVIDC 98 (374)
T ss_pred CCeEEEEeCcchhh---cccHHHHHHHHHhc---CCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-ccHHHH
Confidence 36899988765421 12355666677653 22333221 1111 23445555555678999999999 777666
Q ss_pred HhHh
Q 018199 122 VNGF 125 (359)
Q Consensus 122 lngl 125 (359)
.-.+
T Consensus 99 aK~i 102 (374)
T cd08189 99 AKAI 102 (374)
T ss_pred HHHH
Confidence 6544
No 77
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=83.89 E-value=3.3 Score=40.99 Aligned_cols=74 Identities=22% Similarity=0.360 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHHcCCCEEEEEeCCchHHHHHhHhHhCCccccccccccCCcceEEEeeCcChhhhh---hhcCCCCCHHH
Q 018199 92 SHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFA---RTFGWRNDPYE 168 (359)
Q Consensus 92 ~~a~~~~~~~~~~~~d~ivv~GGDGTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~GTgN~~A---r~lg~~~~~~~ 168 (359)
.+..++++.+...+.|.++++|||||+..+.. |.+.- .....++++.-||.==-||+. +++|...-.+.
T Consensus 163 ~~~~~iv~~L~~~~I~~L~vIGGdgT~~~A~~-L~ee~-------~~~g~~I~VIGIPKTIDNDI~~td~S~GFdTAv~~ 234 (459)
T PTZ00286 163 FDPKVMVDTLIRHGINILFTLGGDGTHRGALA-IYKEL-------RRRKLNISVVGIPKTIDNDIPIIDESFGFQTAVEE 234 (459)
T ss_pred hhHHHHHHHHHHcCCCEEEEeCCchHHHHHHH-HHHHH-------HHhCCCceEEEeccccCCCCCCcccCcCchHHHHH
Confidence 34556666667788999999999999986653 22100 012356899999998889987 66777643344
Q ss_pred HHHHH
Q 018199 169 AVERI 173 (359)
Q Consensus 169 al~~i 173 (359)
+.+++
T Consensus 235 ~~~aI 239 (459)
T PTZ00286 235 AQNAI 239 (459)
T ss_pred HHHHH
Confidence 33333
No 78
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=83.62 E-value=7.8 Score=36.67 Aligned_cols=84 Identities=12% Similarity=0.093 Sum_probs=51.1
Q ss_pred CcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEe---cC--CchHHHHHHHHHHHcCCCEEEEEeCCchHHHH
Q 018199 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESL---TS--GPSHAIDITREAIKEGADAVIAVGGDGTLHEV 121 (359)
Q Consensus 47 ~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~---t~--~~~~a~~~~~~~~~~~~d~ivv~GGDGTv~ev 121 (359)
++++||..+..-. ...+++...|.+. +.++.++. +. .-....+.++.+.. +.|.||++|| |++.++
T Consensus 25 ~kvlivtd~~~~~----~~~~~i~~~L~~~---~~~~~i~~~~~~~~p~~~~v~~~~~~~~~-~~d~IIaiGG-Gsv~D~ 95 (332)
T cd08549 25 SKIMIVCGNNTYK----VAGKEIIERLESN---NFTKEVLERDSLLIPDEYELGEVLIKLDK-DTEFLLGIGS-GTIIDL 95 (332)
T ss_pred CcEEEEECCcHHH----HHHHHHHHHHHHc---CCeEEEEecCCCCCCCHHHHHHHHHHhhc-CCCEEEEECC-cHHHHH
Confidence 7899999876521 1124566666543 22222221 11 22334455555544 8999999999 899998
Q ss_pred HhHhHhCCccccccccccCCcceEEEeeCc
Q 018199 122 VNGFFSAGKLVTNHNRESAHSTALGLIPLG 151 (359)
Q Consensus 122 lngl~~~~~~~~~~~~~~~~~~~lgiiP~G 151 (359)
.-.+.- ...+|+..||.=
T Consensus 96 aK~iA~------------~~gip~I~VPTT 113 (332)
T cd08549 96 VKFVSF------------KVGKPFISVPTA 113 (332)
T ss_pred HHHHHH------------HcCCCEEEeCCC
Confidence 876631 235799999973
No 79
>PF10254 Pacs-1: PACS-1 cytosolic sorting protein; InterPro: IPR019381 PACS-1 is a cytosolic sorting protein that directs the localisation of membrane proteins in the trans-Golgi network (TGN)/endosomal system. PACS-1 connects the clathrin adaptor AP-1 to acidic cluster sorting motifs contained in the cytoplasmic domain of cargo proteins such as furin, the cation-independent mannose-6-phosphate receptor and in viral proteins such as human immunodeficiency virus type 1 Nef [].
Probab=83.59 E-value=5.1 Score=38.87 Aligned_cols=100 Identities=19% Similarity=0.221 Sum_probs=59.1
Q ss_pred cEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEecCCchHHHHHHHHHH----H--------cCCCEEEEEeCC
Q 018199 48 DLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAI----K--------EGADAVIAVGGD 115 (359)
Q Consensus 48 ~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t~~~~~a~~~~~~~~----~--------~~~d~ivv~GGD 115 (359)
.-.+++|+.--.|.. +...|... ..-++.|....+.......+. . ...--|+++|||
T Consensus 17 e~i~Lvn~sd~qgq~------l~~~l~~~-----~~pvv~t~s~advqa~fs~iv~rIQk~Cn~ns~~p~~vKV~v~G~~ 85 (414)
T PF10254_consen 17 ENIILVNTSDWQGQF------LSDLLQEH-----MLPVVCTCSTADVQAAFSAIVSRIQKFCNCNSSPPPPVKVAVAGGQ 85 (414)
T ss_pred ceEEEEecCccchhH------HHHHHhhc-----CCCeEecCCHHHHHHHHHHHHHHHHHhccCCCCCCCceEEEEEccH
Confidence 356778876433321 33344432 122345666666554333222 1 123468999999
Q ss_pred chHHHHHhHhHhCCccccccccccCCcceEEEeeCcChhhhhhhcCC
Q 018199 116 GTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGW 162 (359)
Q Consensus 116 GTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~GTgN~~Ar~lg~ 162 (359)
--++.|+...++.-.. .+.+|. .-+.+-+||+|+ |.+||.||-
T Consensus 86 ~y~~~VLr~yVE~Ls~-K~~dWl--~~~rFlvIPlGs-~~varyLgs 128 (414)
T PF10254_consen 86 SYLSAVLRAYVEQLSH-KPPDWL--NYLRFLVIPLGS-HPVARYLGS 128 (414)
T ss_pred HHHHHHHHHHHHHhcc-CCcccc--cceeEEEecCCC-CHHHHHHhc
Confidence 9999999987763210 011221 245689999999 999999974
No 80
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=83.56 E-value=10 Score=36.26 Aligned_cols=87 Identities=16% Similarity=0.187 Sum_probs=51.5
Q ss_pred CCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEE--Eec----CCchHHHHHHHHHHHcC---CCEEEEEeCCc
Q 018199 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICE--SLT----SGPSHAIDITREAIKEG---ADAVIAVGGDG 116 (359)
Q Consensus 46 ~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~--~~t----~~~~~a~~~~~~~~~~~---~d~ivv~GGDG 116 (359)
.+++++|..+... ....+++.+.|... ++++.. +.. ..-....++++.+...+ .|.||++|| |
T Consensus 31 ~~~~livtd~~~~----~~~~~~v~~~L~~~---gi~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIavGG-G 102 (358)
T PRK00002 31 GKKVAIVTDETVA----PLYLEKLRASLEAA---GFEVDVVVLPDGEQYKSLETLEKIYDALLEAGLDRSDTLIALGG-G 102 (358)
T ss_pred CCeEEEEECCchH----HHHHHHHHHHHHhc---CCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEEcC-c
Confidence 4789999977652 12455666677653 222322 111 12233444454444444 499999988 8
Q ss_pred hHHHHHhHhHhCCccccccccccCCcceEEEeeC
Q 018199 117 TLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPL 150 (359)
Q Consensus 117 Tv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~ 150 (359)
++.+++-.+... ....+|+..||.
T Consensus 103 sv~D~aK~iA~~----------~~~gip~i~IPT 126 (358)
T PRK00002 103 VIGDLAGFAAAT----------YMRGIRFIQVPT 126 (358)
T ss_pred HHHHHHHHHHHH----------hcCCCCEEEcCc
Confidence 999988766421 124578999997
No 81
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=83.36 E-value=9.2 Score=36.68 Aligned_cols=69 Identities=23% Similarity=0.279 Sum_probs=39.6
Q ss_pred CcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEe--cCC--chHHHHHHHHHHHcCCCEEEEEeCCchHHHHH
Q 018199 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESL--TSG--PSHAIDITREAIKEGADAVIAVGGDGTLHEVV 122 (359)
Q Consensus 47 ~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~--t~~--~~~a~~~~~~~~~~~~d~ivv~GGDGTv~evl 122 (359)
+|++||..+.+- ..+++...|++. .+.+.++. ... -....+.++.+...++|.||++|| |++.++.
T Consensus 24 ~~~livtd~~~~------~~~~~~~~l~~~---~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG-Gs~~D~a 93 (367)
T cd08182 24 KRVLLVTGPRSA------IASGLTDILKPL---GTLVVVFDDVQPNPDLEDLAAGIRLLREFGPDAVLAVGG-GSVLDTA 93 (367)
T ss_pred CeEEEEeCchHH------HHHHHHHHHHHc---CCeEEEEcCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCC-cHHHHHH
Confidence 688888766542 223455556543 22333221 111 123445555555568999999998 7777777
Q ss_pred hHh
Q 018199 123 NGF 125 (359)
Q Consensus 123 ngl 125 (359)
-.+
T Consensus 94 K~i 96 (367)
T cd08182 94 KAL 96 (367)
T ss_pred HHH
Confidence 555
No 82
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=83.09 E-value=11 Score=35.99 Aligned_cols=88 Identities=22% Similarity=0.178 Sum_probs=52.3
Q ss_pred CCCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceE--EEe----cCCchHHHHHHHHHHHcCC----CEEEEEeC
Q 018199 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNIC--ESL----TSGPSHAIDITREAIKEGA----DAVIAVGG 114 (359)
Q Consensus 45 ~~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~--~~~----t~~~~~a~~~~~~~~~~~~----d~ivv~GG 114 (359)
..++++||..+..- ....+++...|... ++.+. ++. ..+-....+++..+...+. |.||++||
T Consensus 25 ~~~~~lvVtd~~v~----~~~~~~v~~~l~~~---g~~~~~~v~~~~e~~~s~~~v~~~~~~l~~~~~~r~~d~IVaiGG 97 (354)
T cd08199 25 GSGRRFVVVDQNVD----KLYGKKLREYFAHH---NIPLTILVLRAGEAAKTMDTVLKIVDALDAFGISRRREPVLAIGG 97 (354)
T ss_pred CCCeEEEEECccHH----HHHHHHHHHHHHhc---CCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCCEEEEECC
Confidence 46789999987642 11234566666543 22232 221 1223345555555555455 99998888
Q ss_pred CchHHHHHhHhHhCCccccccccccCCcceEEEeeC
Q 018199 115 DGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPL 150 (359)
Q Consensus 115 DGTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~ 150 (359)
|++.+++-.+.... ...+|+..+|.
T Consensus 98 -G~v~D~ak~~A~~~----------~rg~p~i~VPT 122 (354)
T cd08199 98 -GVLTDVAGLAASLY----------RRGTPYVRIPT 122 (354)
T ss_pred -cHHHHHHHHHHHHh----------cCCCCEEEEcC
Confidence 89988887764211 23578888887
No 83
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=82.32 E-value=3.9 Score=38.76 Aligned_cols=85 Identities=19% Similarity=0.258 Sum_probs=49.1
Q ss_pred CcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEecCCc-hHHHHHHHHHHHcCCCEEEEEeCCchHHHHHhHh
Q 018199 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGP-SHAIDITREAIKEGADAVIAVGGDGTLHEVVNGF 125 (359)
Q Consensus 47 ~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t~~~-~~a~~~~~~~~~~~~d~ivv~GGDGTv~evlngl 125 (359)
+|++||..+..- ...++++...|.+. .. ..+........ ....+.++.+...++|.||++|| |++.++.-.+
T Consensus 24 ~~~livt~~~~~----~~~~~~v~~~l~~~-~~-~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIaiGG-Gs~iD~aK~i 96 (337)
T cd08177 24 SRALVLTTPSLA----TKLAERVASALGDR-VA-GTFDGAVMHTPVEVTEAAVAAAREAGADGIVAIGG-GSTIDLAKAI 96 (337)
T ss_pred CeEEEEcChHHH----HHHHHHHHHHhccC-Cc-EEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-cHHHHHHHHH
Confidence 688888765431 12445566666543 10 11111112222 23334444444578999999998 9999998876
Q ss_pred HhCCccccccccccCCcceEEEeeC
Q 018199 126 FSAGKLVTNHNRESAHSTALGLIPL 150 (359)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~lgiiP~ 150 (359)
.. ...+|+..||.
T Consensus 97 a~------------~~~~p~i~IPT 109 (337)
T cd08177 97 AL------------RTGLPIIAIPT 109 (337)
T ss_pred HH------------HhcCCEEEEcC
Confidence 42 12578999995
No 84
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=82.30 E-value=4.9 Score=38.60 Aligned_cols=86 Identities=13% Similarity=0.141 Sum_probs=52.2
Q ss_pred CcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEecCCc-hHHHHHHHHHHHcCCCEEEEEeCCchHHHHHhHh
Q 018199 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGP-SHAIDITREAIKEGADAVIAVGGDGTLHEVVNGF 125 (359)
Q Consensus 47 ~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t~~~-~~a~~~~~~~~~~~~d~ivv~GGDGTv~evlngl 125 (359)
+|++||..+..- ...++++...|.... ..+.+..+..+.. ....+.++.+...+.|.||++|| |++.++.-.+
T Consensus 30 ~~~livtd~~~~----~~~~~~v~~~l~~~~-~~~~~~~~~~ep~~~~v~~~~~~~~~~~~d~IIavGG-Gsv~D~aK~i 103 (366)
T PRK09423 30 KRALVIADEFVL----GIVGDRVEASLKEAG-LTVVFEVFNGECSDNEIDRLVAIAEENGCDVVIGIGG-GKTLDTAKAV 103 (366)
T ss_pred CEEEEEEChhHH----HHHHHHHHHHHHhCC-CeEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecC-hHHHHHHHHH
Confidence 788998866542 224556666776531 1122222222222 23444444555568999999999 8888888776
Q ss_pred HhCCccccccccccCCcceEEEeeC
Q 018199 126 FSAGKLVTNHNRESAHSTALGLIPL 150 (359)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~lgiiP~ 150 (359)
.. ...+|+..||.
T Consensus 104 A~------------~~~~p~i~IPT 116 (366)
T PRK09423 104 AD------------YLGVPVVIVPT 116 (366)
T ss_pred HH------------HcCCCEEEeCC
Confidence 42 23578999997
No 85
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=81.63 E-value=17 Score=30.20 Aligned_cols=65 Identities=17% Similarity=0.155 Sum_probs=38.5
Q ss_pred CCCchhhhHHHHHHHHHhccccccceEEEec---CCchHHHHHHHHHHHcCCCEE-EEEeCCchHHHHHhHh
Q 018199 58 ASGRTGKEWKKLLPYLRSRLSVDCNICESLT---SGPSHAIDITREAIKEGADAV-IAVGGDGTLHEVVNGF 125 (359)
Q Consensus 58 G~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t---~~~~~a~~~~~~~~~~~~d~i-vv~GGDGTv~evlngl 125 (359)
|+..-....++....|++. + +.+++... ..++...++++++..++.+++ .++|+++-|--|+.++
T Consensus 8 gs~SD~~~~~~a~~~L~~~-g--i~~~~~V~saHR~p~~l~~~~~~~~~~~~~viIa~AG~~a~Lpgvva~~ 76 (150)
T PF00731_consen 8 GSTSDLPIAEEAAKTLEEF-G--IPYEVRVASAHRTPERLLEFVKEYEARGADVIIAVAGMSAALPGVVASL 76 (150)
T ss_dssp SSGGGHHHHHHHHHHHHHT-T---EEEEEE--TTTSHHHHHHHHHHTTTTTESEEEEEEESS--HHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHc-C--CCEEEEEEeccCCHHHHHHHHHHhccCCCEEEEEECCCcccchhhheec
Confidence 3333345567777777763 3 33433332 355666777777655566654 5669999999999987
No 86
>PRK10586 putative oxidoreductase; Provisional
Probab=81.46 E-value=13 Score=35.74 Aligned_cols=88 Identities=16% Similarity=0.183 Sum_probs=50.8
Q ss_pred CcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEec-CCchHHHHHHHHHHHcCCCEEEEEeCCchHHHHHhHh
Q 018199 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLT-SGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGF 125 (359)
Q Consensus 47 ~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t-~~~~~a~~~~~~~~~~~~d~ivv~GGDGTv~evlngl 125 (359)
+|++||.-+.+- .+....+.+.|.+. ++.+..+.- ....+..++++.. ..+.|.||.+|| |++.++.-.+
T Consensus 35 ~~~lvv~g~~~~----~~~~~~~~~~l~~~---~~~~~~~~g~~~~~~v~~l~~~~-~~~~d~iiavGG-Gs~iD~aK~~ 105 (362)
T PRK10586 35 SRAVWIYGERAI----AAAQPYLPPAFELP---GAKHILFRGHCSESDVAQLAAAS-GDDRQVVIGVGG-GALLDTAKAL 105 (362)
T ss_pred CeEEEEEChHHH----HHHHHHHHHHHHHc---CCeEEEeCCCCCHHHHHHHHHHh-ccCCCEEEEecC-cHHHHHHHHH
Confidence 678888765431 12223344455543 233333321 2233444554443 356899999998 8888888777
Q ss_pred HhCCccccccccccCCcceEEEeeCcChhh
Q 018199 126 FSAGKLVTNHNRESAHSTALGLIPLGTGSD 155 (359)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~lgiiP~GTgN~ 155 (359)
.. ...+|+..+|.=.+|+
T Consensus 106 a~------------~~~~p~i~vPT~a~t~ 123 (362)
T PRK10586 106 AR------------RLGLPFVAIPTIAATC 123 (362)
T ss_pred Hh------------hcCCCEEEEeCCcccc
Confidence 42 2357999999844443
No 87
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=81.03 E-value=4.2 Score=40.05 Aligned_cols=72 Identities=19% Similarity=0.294 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHcCCCEEEEEeCCchHHHHHhHhHhCCccccccccccCCcceEEEeeCcChhhhh---hhcCCCCCHHHH
Q 018199 93 HAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFA---RTFGWRNDPYEA 169 (359)
Q Consensus 93 ~a~~~~~~~~~~~~d~ivv~GGDGTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~GTgN~~A---r~lg~~~~~~~a 169 (359)
+..++++.+...+.|.++++|||||+.-+.. |.+.- .....++++.-||.==-||+. +++|...-...+
T Consensus 160 ~~~~iv~~L~~~~I~~L~vIGGdgT~~gA~~-l~ee~-------~~~g~~I~VIGIPKTIDNDi~~td~S~GFdTAv~~a 231 (443)
T PRK06830 160 DPEEIVDTLERMNINILFVIGGDGTLRGASA-IAEEI-------ERRGLKISVIGIPKTIDNDINFIQKSFGFETAVEKA 231 (443)
T ss_pred hHHHHHHHHHHcCCCEEEEeCCchHHHHHHH-HHHHH-------HHhCCCceEEEeccccCCCCcCcccCCCHHHHHHHH
Confidence 4555666666778999999999999976654 32100 001346899999998889987 556665433333
Q ss_pred HHH
Q 018199 170 VER 172 (359)
Q Consensus 170 l~~ 172 (359)
.+.
T Consensus 232 ~~a 234 (443)
T PRK06830 232 TEA 234 (443)
T ss_pred HHH
Confidence 333
No 88
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=80.65 E-value=16 Score=35.77 Aligned_cols=71 Identities=27% Similarity=0.259 Sum_probs=41.1
Q ss_pred CcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEe--cCCc--hHHHHHHHHHHHcCCCEEEEEeCCchHHHHH
Q 018199 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESL--TSGP--SHAIDITREAIKEGADAVIAVGGDGTLHEVV 122 (359)
Q Consensus 47 ~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~--t~~~--~~a~~~~~~~~~~~~d~ivv~GGDGTv~evl 122 (359)
++++|+.-+..-+ ...++++...|++. ++++.++. ...+ ....+.++.+...+.|.||++|| |++-++.
T Consensus 24 ~~vlivt~~~~~~---~g~~~~v~~~L~~~---gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GSviD~A 96 (414)
T cd08190 24 RRVCLVTDPNLAQ---LPPVKVVLDSLEAA---GINFEVYDDVRVEPTDESFKDAIAFAKKGQFDAFVAVGG-GSVIDTA 96 (414)
T ss_pred CeEEEEECcchhh---cchHHHHHHHHHHc---CCcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-ccHHHHH
Confidence 7888888765321 22355667777653 23343331 1111 23445555555678999999999 6666654
Q ss_pred hH
Q 018199 123 NG 124 (359)
Q Consensus 123 ng 124 (359)
-.
T Consensus 97 Ka 98 (414)
T cd08190 97 KA 98 (414)
T ss_pred HH
Confidence 43
No 89
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=79.90 E-value=14 Score=35.63 Aligned_cols=106 Identities=21% Similarity=0.250 Sum_probs=56.0
Q ss_pred CCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEe----cCCchHHHHHHHHHHHcCCCEEEEEeCCchHHHH
Q 018199 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESL----TSGPSHAIDITREAIKEGADAVIAVGGDGTLHEV 121 (359)
Q Consensus 46 ~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~----t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTv~ev 121 (359)
.+|++|+.-+... ....++++...|++. +.++.++. ........+.++.+...++|.||++|| |++.++
T Consensus 26 ~~~~livt~~~~~---~~~~~~~v~~~L~~~---~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-Gs~iD~ 98 (376)
T cd08193 26 AKRVLVVTDPGIL---KAGLIDPLLASLEAA---GIEVTVFDDVEADPPEAVVEAAVEAARAAGADGVIGFGG-GSSMDV 98 (376)
T ss_pred CCeEEEEcCcchh---hCccHHHHHHHHHHc---CCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHH
Confidence 3788888765321 122356677777653 22333221 112234555666666678999999999 777777
Q ss_pred HhHhHh---CCccccc---cccccCCcceEEEeeC--cChhhhhh
Q 018199 122 VNGFFS---AGKLVTN---HNRESAHSTALGLIPL--GTGSDFAR 158 (359)
Q Consensus 122 lngl~~---~~~~~~~---~~~~~~~~~~lgiiP~--GTgN~~Ar 158 (359)
.-.+.. .+....+ ........+|+..||. |||--...
T Consensus 99 aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTTagtgSe~t~ 143 (376)
T cd08193 99 AKLVAVLAGSDQPLADMYGVDLVAGPRLPLILVPTTAGTGSEVTP 143 (376)
T ss_pred HHHHHHHHHCCCCHHHHhCCCccCCCCCCEEEeCCCCcchHhhCC
Confidence 755421 1100000 0000123578888997 55544333
No 90
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=79.72 E-value=6.3 Score=37.77 Aligned_cols=96 Identities=18% Similarity=0.230 Sum_probs=52.4
Q ss_pred cEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEe--cC--CchHHHHHHHHHHHcCCCEEEEEeCCchHHHHHh
Q 018199 48 DLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESL--TS--GPSHAIDITREAIKEGADAVIAVGGDGTLHEVVN 123 (359)
Q Consensus 48 ~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~--t~--~~~~a~~~~~~~~~~~~d~ivv~GGDGTv~evln 123 (359)
|++||.+| +- .....++++...|++. ++++.++. .. ...+..+.++.+...++|.||++|| |++-+++-
T Consensus 23 r~lvVt~~-~~--~~~~~~~~v~~~L~~~---~i~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~~D~aK 95 (366)
T PF00465_consen 23 RVLVVTDP-SL--SKSGLVDRVLDALEEA---GIEVQVFDGVGPNPTLEDVDEAAEQARKFGADCIIAIGG-GSVMDAAK 95 (366)
T ss_dssp EEEEEEEH-HH--HHHTHHHHHHHHHHHT---TCEEEEEEEESSS-BHHHHHHHHHHHHHTTSSEEEEEES-HHHHHHHH
T ss_pred CEEEEECc-hH--HhCccHHHHHHHHhhC---ceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCEEEEcCC-CCcCcHHH
Confidence 99999988 32 2222566777777653 23332222 22 2235556666666778999999999 55555444
Q ss_pred Hh---HhCCcccccc----ccccCCcceEEEeeC
Q 018199 124 GF---FSAGKLVTNH----NRESAHSTALGLIPL 150 (359)
Q Consensus 124 gl---~~~~~~~~~~----~~~~~~~~~lgiiP~ 150 (359)
.+ +..+....+. .......+|+..||.
T Consensus 96 ~va~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPT 129 (366)
T PF00465_consen 96 AVALLLANPGDLRDLLGKGPPPTKPALPLIAIPT 129 (366)
T ss_dssp HHHHHHTSSSCGGGGGCECSCCSS--SEEEEEES
T ss_pred HHHhhccCCCcHHHHHhhccccccCCCcEEEeeC
Confidence 43 3321100000 001223479999998
No 91
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=79.47 E-value=10 Score=36.04 Aligned_cols=85 Identities=15% Similarity=0.176 Sum_probs=50.6
Q ss_pred CCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEE--e-c---CCchHHHHHHHHHHHcCCCEEEEEeCCchHH
Q 018199 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICES--L-T---SGPSHAIDITREAIKEGADAVIAVGGDGTLH 119 (359)
Q Consensus 46 ~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~--~-t---~~~~~a~~~~~~~~~~~~d~ivv~GGDGTv~ 119 (359)
.+|++||..+.+- ....+++...|.+. ++++..+ . . .......+.++.+.. +.|.||++|| |++-
T Consensus 23 ~~~~livtd~~~~----~~~~~~v~~~l~~~---~i~~~~~~~~~~~~~pt~~~v~~~~~~~~~-~~d~IIaIGG-Gs~~ 93 (348)
T cd08175 23 YKKALIVADENTY----AAAGKKVEALLKRA---GVVVLLIVLPAGDLIADEKAVGRVLKELER-DTDLIIAVGS-GTIN 93 (348)
T ss_pred CCcEEEEECCcHH----HHHHHHHHHHHHHC---CCeeEEeecCCCcccCCHHHHHHHHHHhhc-cCCEEEEECC-cHHH
Confidence 3688888866542 11234566666653 2222221 1 1 122234444444434 8999999999 8888
Q ss_pred HHHhHhHhCCccccccccccCCcceEEEeeCc
Q 018199 120 EVVNGFFSAGKLVTNHNRESAHSTALGLIPLG 151 (359)
Q Consensus 120 evlngl~~~~~~~~~~~~~~~~~~~lgiiP~G 151 (359)
++.-.+.. ...+|+..||.=
T Consensus 94 D~aK~vA~------------~~~~p~i~IPTT 113 (348)
T cd08175 94 DITKYVSY------------KTGIPYISVPTA 113 (348)
T ss_pred HHHHHHHH------------hcCCCEEEecCc
Confidence 88877742 235799999973
No 92
>PLN02564 6-phosphofructokinase
Probab=78.89 E-value=5.1 Score=39.76 Aligned_cols=63 Identities=24% Similarity=0.415 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHcCCCEEEEEeCCchHHHHHhHhHhCCccccccccccCCcceEEEeeCcChhhhh---hhcCCC
Q 018199 93 HAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFA---RTFGWR 163 (359)
Q Consensus 93 ~a~~~~~~~~~~~~d~ivv~GGDGTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~GTgN~~A---r~lg~~ 163 (359)
+..+++..+...+.|.++++|||||+.-+.. |.+.- .....++++.-||.==-||+. +++|+.
T Consensus 164 ~~~~iv~~L~~~~Id~LivIGGDGS~~gA~~-L~e~~-------~~~g~~i~VIGIPKTIDNDI~~tD~T~GFd 229 (484)
T PLN02564 164 DTSKIVDSIQDRGINQVYIIGGDGTQKGASV-IYEEI-------RRRGLKVAVAGIPKTIDNDIPVIDKSFGFD 229 (484)
T ss_pred hHHHHHHHHHHhCCCEEEEECCchHHHHHHH-HHHHH-------HHcCCCceEEEecccccCCCcCcccCCCHH
Confidence 4556666677778999999999999976653 22100 001345678888988888887 446654
No 93
>PLN02834 3-dehydroquinate synthase
Probab=78.74 E-value=16 Score=35.98 Aligned_cols=89 Identities=15% Similarity=0.165 Sum_probs=47.7
Q ss_pred CcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceE--EEe----cCCchHHHHHHHHHHHcCCC---EEEEEeCCch
Q 018199 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNIC--ESL----TSGPSHAIDITREAIKEGAD---AVIAVGGDGT 117 (359)
Q Consensus 47 ~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~--~~~----t~~~~~a~~~~~~~~~~~~d---~ivv~GGDGT 117 (359)
++++||.++... ....+++...|.... ....+. ++. +.......+++..+...+.| .||++|| |+
T Consensus 101 ~rvlIVtD~~v~----~~~~~~v~~~L~~~g-~~~~v~~~v~~~gE~~ksl~~v~~~~~~l~~~~~dr~~~VIAiGG-Gs 174 (433)
T PLN02834 101 KRVLVVTNETVA----PLYLEKVVEALTAKG-PELTVESVILPDGEKYKDMETLMKVFDKALESRLDRRCTFVALGG-GV 174 (433)
T ss_pred CEEEEEECccHH----HHHHHHHHHHHHhcC-CceEEEEEEecCCcCCCCHHHHHHHHHHHHhcCCCcCcEEEEECC-hH
Confidence 667777766532 113345556665431 111211 111 12233444455555555555 8888888 88
Q ss_pred HHHHHhHhHhCCccccccccccCCcceEEEeeCc
Q 018199 118 LHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLG 151 (359)
Q Consensus 118 v~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~G 151 (359)
+.++.-.+.... ...+|+..+|.-
T Consensus 175 v~D~ak~~A~~y----------~rgiplI~VPTT 198 (433)
T PLN02834 175 IGDMCGFAAASY----------QRGVNFVQIPTT 198 (433)
T ss_pred HHHHHHHHHHHh----------cCCCCEEEECCc
Confidence 888886543111 235899999983
No 94
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=78.08 E-value=11 Score=36.13 Aligned_cols=104 Identities=22% Similarity=0.296 Sum_probs=53.6
Q ss_pred CcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEE--ecCCc--hHHHHHHHHHHHcC--CCEEEEEeCCchHHH
Q 018199 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICES--LTSGP--SHAIDITREAIKEG--ADAVIAVGGDGTLHE 120 (359)
Q Consensus 47 ~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~--~t~~~--~~a~~~~~~~~~~~--~d~ivv~GGDGTv~e 120 (359)
+|++|+..+...+ ...++++...|... .+.++ ....+ ....+.++.+...+ +|.||++|| |++-+
T Consensus 24 ~r~lvVtd~~~~~---~g~~~~v~~~L~~~-----~~~~~~~v~~~pt~~~v~~~~~~~~~~~~~~D~IIaiGG-GSviD 94 (355)
T TIGR03405 24 RRVVVVTFPEARA---LGLARRLEALLGGR-----LAALIDDVAPNPDVAQLDGLYARLWGDEGACDLVIALGG-GSVID 94 (355)
T ss_pred CeEEEEECcchhh---cchHHHHHHHhccC-----cEEEeCCCCCCcCHHHHHHHHHHHHhcCCCCCEEEEeCC-ccHHH
Confidence 7899998765421 22345555555432 12222 11122 23444444444445 899999999 77777
Q ss_pred HHhHhHh---CCcc--cc-----ccccccCCcceEEEeeC--cChhhhhhh
Q 018199 121 VVNGFFS---AGKL--VT-----NHNRESAHSTALGLIPL--GTGSDFART 159 (359)
Q Consensus 121 vlngl~~---~~~~--~~-----~~~~~~~~~~~lgiiP~--GTgN~~Ar~ 159 (359)
+.-.+.. .+.. .. .........+|+..||. |||--..+.
T Consensus 95 ~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~P~IaVPTTagTGSE~t~~ 145 (355)
T TIGR03405 95 TAKVLAVGLRRGEFDLLLQLLRNGRDFAPTARLPLVAIPTTAGTGSEVTPW 145 (355)
T ss_pred HHHHHHHHHhCCCcccHHHHHhcCCccCCCCCCCEEEEcCCCcchhhhcCe
Confidence 7655421 1100 00 00000124578999997 776555544
No 95
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=78.04 E-value=4.4 Score=38.26 Aligned_cols=57 Identities=30% Similarity=0.403 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHcCCCEEEEEeCCchHHHHHhHhHhCCccccccccccCCcceEEEeeCcChhhhh---hhcCCC
Q 018199 93 HAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFA---RTFGWR 163 (359)
Q Consensus 93 ~a~~~~~~~~~~~~d~ivv~GGDGTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~GTgN~~A---r~lg~~ 163 (359)
+....++.+...+.|.++++|||||+..+. .|.+ ..+++--||.==-||+. .++|..
T Consensus 82 ~~~~~~~~l~~~~Id~LivIGGdgS~~~a~-~L~~-------------~gi~vigiPkTIDNDl~gtd~tiGfd 141 (324)
T TIGR02483 82 GDDKIVANLKELGLDALIAIGGDGTLGIAR-RLAD-------------KGLPVVGVPKTIDNDLEATDYTFGFD 141 (324)
T ss_pred HHHHHHHHHHHcCCCEEEEECCchHHHHHH-HHHh-------------cCCCEEeeccccCCCCcCCccCcCHH
Confidence 445566666677899999999999997664 4532 24888889998889997 345654
No 96
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=77.49 E-value=4.9 Score=37.78 Aligned_cols=52 Identities=21% Similarity=0.340 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHcCCCEEEEEeCCchHHHHHhHhHhCCccccccccccCCcceEEEeeCcChhhhh
Q 018199 92 SHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFA 157 (359)
Q Consensus 92 ~~a~~~~~~~~~~~~d~ivv~GGDGTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~GTgN~~A 157 (359)
.+....++.+...+.|.++++|||||+..+.. |.+ ..+++--||.==-||+.
T Consensus 79 ~~~~~~~~~l~~~~Id~Li~IGGdgs~~~a~~-L~e-------------~~i~vigiPkTIDNDi~ 130 (317)
T cd00763 79 EGQAKAIEQLKKHGIDALVVIGGDGSYMGAMR-LTE-------------HGFPCVGLPGTIDNDIP 130 (317)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCchHHHHHHH-HHH-------------cCCCEEEecccccCCCC
Confidence 34455566677788999999999999987763 432 35899999998889887
No 97
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=74.47 E-value=17 Score=34.94 Aligned_cols=72 Identities=18% Similarity=0.164 Sum_probs=42.8
Q ss_pred CcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEe--cC--CchHHHHHHHHHHHcCCCEEEEEeCCchHHHHH
Q 018199 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESL--TS--GPSHAIDITREAIKEGADAVIAVGGDGTLHEVV 122 (359)
Q Consensus 47 ~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~--t~--~~~~a~~~~~~~~~~~~d~ivv~GGDGTv~evl 122 (359)
++++|+..+..-+ ...++++...|++. ++++.++. .. ......+.++.+...+.|.||++|| |++.+++
T Consensus 25 ~~~liv~~~~~~~---~~~~~~v~~~L~~~---g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGG-GSviD~a 97 (370)
T cd08192 25 KRPLIVTDPGLAA---LGLVARVLALLEDA---GLAAALFDEVPPNPTEAAVEAGLAAYRAGGCDGVIAFGG-GSALDLA 97 (370)
T ss_pred CeEEEEcCcchhh---CccHHHHHHHHHHc---CCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHH
Confidence 6888888765421 22456677777653 22333221 11 1123445555555678999999999 7887777
Q ss_pred hHh
Q 018199 123 NGF 125 (359)
Q Consensus 123 ngl 125 (359)
-.+
T Consensus 98 K~i 100 (370)
T cd08192 98 KAV 100 (370)
T ss_pred HHH
Confidence 654
No 98
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=74.14 E-value=7.1 Score=36.44 Aligned_cols=58 Identities=17% Similarity=0.336 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHcCCCEEEEEeCCchHHHHHhHhHhCCccccccccccCCcceEEEeeCcChhhhhh---hcCCC
Q 018199 93 HAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFAR---TFGWR 163 (359)
Q Consensus 93 ~a~~~~~~~~~~~~d~ivv~GGDGTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~GTgN~~Ar---~lg~~ 163 (359)
+....++.+...+.|.++++|||||+..+.. |.+ ...+++--||.=--||+.- ++|..
T Consensus 79 ~~~~~~~~l~~~~Id~Li~IGGdgs~~~a~~-L~e------------~~~i~vigiPkTIDNDl~~td~s~Gfd 139 (301)
T TIGR02482 79 GRQKAVENLKKLGIEGLVVIGGDGSYTGAQK-LYE------------EGGIPVIGLPGTIDNDIPGTDYTIGFD 139 (301)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCchHHHHHHH-HHH------------hhCCCEEeecccccCCCcCcccCcChh
Confidence 3445566666778999999999999987753 331 1358889999999999873 45554
No 99
>PRK03202 6-phosphofructokinase; Provisional
Probab=74.07 E-value=6.5 Score=37.05 Aligned_cols=52 Identities=23% Similarity=0.326 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHcCCCEEEEEeCCchHHHHHhHhHhCCccccccccccCCcceEEEeeCcChhhhh
Q 018199 92 SHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFA 157 (359)
Q Consensus 92 ~~a~~~~~~~~~~~~d~ivv~GGDGTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~GTgN~~A 157 (359)
+....+++.+...+.|.++++|||||+..+.. |. +..+++--||.==-||+.
T Consensus 80 ~~~~~~~~~l~~~~Id~Li~IGGd~s~~~a~~-L~-------------e~~i~vigiPkTIDNDl~ 131 (320)
T PRK03202 80 EGRAKAIENLKKLGIDALVVIGGDGSYMGAKR-LT-------------EHGIPVIGLPGTIDNDIA 131 (320)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCChHHHHHHHH-HH-------------hcCCcEEEecccccCCCC
Confidence 34555666666788999999999999988764 43 236889999998889887
No 100
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=73.97 E-value=29 Score=33.71 Aligned_cols=92 Identities=14% Similarity=0.236 Sum_probs=49.4
Q ss_pred CCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccc-eEEE-------ecCCc-hHHHHHHHHHHHcCC---CEEEEEe
Q 018199 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCN-ICES-------LTSGP-SHAIDITREAIKEGA---DAVIAVG 113 (359)
Q Consensus 46 ~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~-~~~~-------~t~~~-~~a~~~~~~~~~~~~---d~ivv~G 113 (359)
.+|++||.++.-.+ .....++++...|.+... .+. +... ..+.. ....++.+.+...+. |.||++|
T Consensus 42 ~~r~liVtD~~v~~-~~~~l~~~v~~~L~~~g~-~~~~~~~~~~~~~ge~~k~~~~~v~~i~~~~~~~~~dr~d~IIaiG 119 (389)
T PRK06203 42 PKKVLVVIDSGVLR-AHPDLLEQITAYFAAHAD-VLELVAEPLVVPGGEAAKNDPALVEALHAAINRHGIDRHSYVLAIG 119 (389)
T ss_pred CCeEEEEECchHHH-hhhhHHHHHHHHHHhcCC-ceeeeeeEEEccCCccCCCcHHHHHHHHHHHHHcCCCCCceEEEeC
Confidence 47899999876432 111234556666654311 111 0001 12222 224445555544444 4999998
Q ss_pred CCchHHHHHhHhHhCCccccccccccCCcceEEEeeC
Q 018199 114 GDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPL 150 (359)
Q Consensus 114 GDGTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~ 150 (359)
| |++-+++-.+.... ...+|+..||.
T Consensus 120 G-Gsv~D~ak~iA~~~----------~rgip~I~IPT 145 (389)
T PRK06203 120 G-GAVLDMVGYAAATA----------HRGVRLIRIPT 145 (389)
T ss_pred C-cHHHHHHHHHHHHh----------cCCCCEEEEcC
Confidence 8 88888876553211 23578999996
No 101
>PRK15138 aldehyde reductase; Provisional
Probab=73.58 E-value=14 Score=35.81 Aligned_cols=105 Identities=14% Similarity=0.168 Sum_probs=52.7
Q ss_pred CcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEe--cCCc--hHHHHHHHHHHHcCCCEEEEEeCCchHHHHH
Q 018199 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESL--TSGP--SHAIDITREAIKEGADAVIAVGGDGTLHEVV 122 (359)
Q Consensus 47 ~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~--t~~~--~~a~~~~~~~~~~~~d~ivv~GGDGTv~evl 122 (359)
+|++|+.-+.+- +....++++...|. +.++.++. +.++ ....+.++.+...+.|.||++|| |++-++.
T Consensus 30 ~~~livt~~~~~--~~~g~~~~v~~~L~-----~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~A 101 (387)
T PRK15138 30 ARVLITYGGGSV--KKTGVLDQVLDALK-----GMDVLEFGGIEPNPTYETLMKAVKLVREEKITFLLAVGG-GSVLDGT 101 (387)
T ss_pred CeEEEECCCchH--HhcCcHHHHHHHhc-----CCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEEeCC-hHHHHHH
Confidence 788888765431 11223445555553 12233331 1122 24445555555678999999999 6665555
Q ss_pred hHhH---hCCc--ccc----ccccccCCcceEEEeeC--cChhhhhhh
Q 018199 123 NGFF---SAGK--LVT----NHNRESAHSTALGLIPL--GTGSDFART 159 (359)
Q Consensus 123 ngl~---~~~~--~~~----~~~~~~~~~~~lgiiP~--GTgN~~Ar~ 159 (359)
-.+. .... ... .........+|+..||. |||--....
T Consensus 102 K~ia~~~~~~~~~~~~~~~~~~~~~~~~~~P~iaVPTTaGTGSE~t~~ 149 (387)
T PRK15138 102 KFIAAAANYPENIDPWHILETGGKEIKSAIPMGSVLTLPATGSESNAG 149 (387)
T ss_pred HHHHHHHhCCCCCCHHHHHhccCCCcCCCCCEEEEecCCccccccCCC
Confidence 4432 1110 000 00001123578999997 676544443
No 102
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=72.49 E-value=8.1 Score=36.72 Aligned_cols=57 Identities=18% Similarity=0.207 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHcCCCEEEEEeCCchHHHHHhHhHhCCccccccccccCCcceEEEeeCcChhhhh
Q 018199 93 HAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFA 157 (359)
Q Consensus 93 ~a~~~~~~~~~~~~d~ivv~GGDGTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~GTgN~~A 157 (359)
+...+++.+.+.+.|.++++|||||+..+.. |.+.- .....++++--||.=--||+.
T Consensus 80 ~~~~~~~~l~~~~I~~Lv~IGGd~s~~~a~~-L~e~~-------~~~~~~i~vigiPkTIDNDl~ 136 (338)
T cd00363 80 GRAKAAENLKKHGIDALVVIGGDGSYTGADL-LTEEW-------PSKYQGFNVIGLPGTIDNDIK 136 (338)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCHHHHHHHHH-HHHHH-------HhcCCCccEEEeeecccCCCc
Confidence 3455666666788999999999999976653 32110 012357999999977788887
No 103
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=70.80 E-value=15 Score=32.62 Aligned_cols=65 Identities=22% Similarity=0.258 Sum_probs=46.8
Q ss_pred ceEEEecCCchHHHHHHHHHHHcCCCEEEEEeCCchHHHHHhHhHhCCccccccccccCCcceEEEeeCcChh
Q 018199 82 NICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGS 154 (359)
Q Consensus 82 ~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~GTgN 154 (359)
+++.+.....+.+.++++.+...+.|.|.+-|-||.-.+-+..++.+- ....++|+-+.|....+
T Consensus 18 H~tliDP~k~~~~~ei~~~~~~~GTDaImIGGS~gvt~~~~~~~v~~i--------k~~~~lPvilfP~~~~~ 82 (240)
T COG1646 18 HLTLIDPDKTEEADEIAEAAAEAGTDAIMIGGSDGVTEENVDNVVEAI--------KERTDLPVILFPGSPSG 82 (240)
T ss_pred EEEEeCcccccccHHHHHHHHHcCCCEEEECCcccccHHHHHHHHHHH--------HhhcCCCEEEecCChhc
Confidence 444444444466778888888899999999999997766666665432 12578999999987644
No 104
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=70.26 E-value=7.1 Score=37.11 Aligned_cols=49 Identities=20% Similarity=0.313 Sum_probs=36.2
Q ss_pred HHHHHHHHcCCCEEEEEeCCchHHHHHhHhHhCCccccccccccCCcceEEEeeCcChhhhh
Q 018199 96 DITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFA 157 (359)
Q Consensus 96 ~~~~~~~~~~~d~ivv~GGDGTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~GTgN~~A 157 (359)
..++.+...+.|.+|++|||||..-..- |.+ .-.+++--+|.===||+.
T Consensus 85 ~~~~~l~~~gId~LvvIGGDgS~~gA~~-Lae------------~~~i~vVGvPkTIDNDi~ 133 (347)
T COG0205 85 VAAENLKKLGIDALVVIGGDGSYTGAAL-LAE------------EGGIPVVGVPKTIDNDIS 133 (347)
T ss_pred HHHHHHHHcCCCEEEEECCCChHHHHHH-HHH------------hcCCcEEecCCCccCCCc
Confidence 3444566678999999999999877663 332 123788888888888888
No 105
>PRK14072 6-phosphofructokinase; Provisional
Probab=69.84 E-value=11 Score=36.90 Aligned_cols=64 Identities=9% Similarity=0.087 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHcCCCEEEEEeCCchHHHHHhHhHhCCccccccccccCCcceEEEeeCcChhhhh---hhcCCC
Q 018199 92 SHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFA---RTFGWR 163 (359)
Q Consensus 92 ~~a~~~~~~~~~~~~d~ivv~GGDGTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~GTgN~~A---r~lg~~ 163 (359)
+....+++.+...+.|.+|++|||||+.-+.. |.+.. .+...++++--||.===||+. .++|+.
T Consensus 90 ~~~~~~~~~l~~~~Id~LivIGGdgS~~~a~~-L~e~~-------~~~g~~i~vIgIPkTIDNDl~gtD~t~GF~ 156 (416)
T PRK14072 90 AEYERLLEVFKAHDIGYFFYNGGNDSMDTALK-VSQLA-------KKMGYPIRCIGIPKTIDNDLPGTDHCPGFG 156 (416)
T ss_pred HHHHHHHHHHHHcCCCEEEEECChHHHHHHHH-HHHHH-------HHhCCCceEEEeeecccCCCCCCCCCCChH
Confidence 34455556666778999999999999977653 32100 001345899999987789998 345554
No 106
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=68.69 E-value=10 Score=36.84 Aligned_cols=57 Identities=16% Similarity=0.176 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHcCCCEEEEEeCCchHHHHHhHhHhCCccccccccccCCcceEEEeeCcChhhhh
Q 018199 93 HAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFA 157 (359)
Q Consensus 93 ~a~~~~~~~~~~~~d~ivv~GGDGTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~GTgN~~A 157 (359)
....+++.+...+.|.++++|||||+.-+.. |.+.- .+....+++--||.==-||+.
T Consensus 100 ~~~~~~~~L~~~~Id~Li~IGGdgS~~~a~~-L~~~~-------~~~g~~i~vvgIPkTIDNDl~ 156 (403)
T PRK06555 100 PLKVAAERLAADGVDILHTIGGDDTNTTAAD-LAAYL-------AENGYDLTVVGLPKTIDNDVV 156 (403)
T ss_pred HHHHHHHHHHHcCCCEEEEECChhHHHHHHH-HHHHH-------HHhCCCceEEEeeeeeeCCCC
Confidence 3445566666778999999999999987653 32100 001246899999998889986
No 107
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=67.39 E-value=46 Score=27.79 Aligned_cols=74 Identities=19% Similarity=0.282 Sum_probs=47.6
Q ss_pred hhhHHHHHHHHHhccccccceEEE-ecCCchHHHHHHHHHHHcCCCEEEE-EeCCchHHHHHhHhHhCCccccccccccC
Q 018199 63 GKEWKKLLPYLRSRLSVDCNICES-LTSGPSHAIDITREAIKEGADAVIA-VGGDGTLHEVVNGFFSAGKLVTNHNRESA 140 (359)
Q Consensus 63 ~~~~~~~~~~l~~~~~~~~~~~~~-~t~~~~~a~~~~~~~~~~~~d~ivv-~GGDGTv~evlngl~~~~~~~~~~~~~~~ 140 (359)
....++....|+. ++..+++.+. .-..+++..++++++..++.++||+ +|+.+-|--|+.++
T Consensus 11 ~~~~~~a~~~L~~-~gi~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~Lpgvva~~--------------- 74 (156)
T TIGR01162 11 LPTMKKAADILEE-FGIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGAGGAAHLPGMVAAL--------------- 74 (156)
T ss_pred HHHHHHHHHHHHH-cCCCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeCCccchhHHHHHhc---------------
Confidence 3445666666755 3333444332 2345677888888877777776654 58888888888876
Q ss_pred CcceEEEeeCcC
Q 018199 141 HSTALGLIPLGT 152 (359)
Q Consensus 141 ~~~~lgiiP~GT 152 (359)
...|+--+|.-+
T Consensus 75 t~~PVIgvP~~~ 86 (156)
T TIGR01162 75 TPLPVIGVPVPS 86 (156)
T ss_pred cCCCEEEecCCc
Confidence 356776677755
No 108
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=67.00 E-value=38 Score=34.45 Aligned_cols=35 Identities=17% Similarity=0.267 Sum_probs=24.7
Q ss_pred CCCEEEEEeCCchHHHHHhHhHhCCccccccccccCCcceEEEeeC
Q 018199 105 GADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPL 150 (359)
Q Consensus 105 ~~d~ivv~GGDGTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~ 150 (359)
+.|.||++|| |++.+++-.+.... ...+|+..+|.
T Consensus 269 r~D~IIAIGG-Gsv~D~AKfvA~~y----------~rGi~~i~vPT 303 (542)
T PRK14021 269 RSDAIVGLGG-GAATDLAGFVAATW----------MRGIRYVNCPT 303 (542)
T ss_pred CCcEEEEEcC-hHHHHHHHHHHHHH----------HcCCCEEEeCC
Confidence 5788888888 88888886664211 24578888887
No 109
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=66.86 E-value=52 Score=31.67 Aligned_cols=93 Identities=17% Similarity=0.172 Sum_probs=51.1
Q ss_pred CCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccc----eEEEe----cCCc-hHHHHHHHHHHHcCCC---EEEEEe
Q 018199 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCN----ICESL----TSGP-SHAIDITREAIKEGAD---AVIAVG 113 (359)
Q Consensus 46 ~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~----~~~~~----t~~~-~~a~~~~~~~~~~~~d---~ivv~G 113 (359)
.++++||.++.-.+ ......+++...|.+.. ..+. ..++. ++.. ....++.+.+...+.| .||++|
T Consensus 30 ~~r~lvVtD~~v~~-~~~~~~~~l~~~L~~~g-~~~~v~~~~~~~~~ge~~k~~~~~v~~i~~~l~~~~~~r~~~IIalG 107 (369)
T cd08198 30 RPKVLVVIDSGVAQ-ANPQLASDIQAYAAAHA-DALRLVAPPHIVPGGEACKNDPDLVEALHAAINRHGIDRHSYVIAIG 107 (369)
T ss_pred CCeEEEEECcchHH-hhhhHHHHHHHHHHhcC-CceeeeeeeEecCCCccCCChHHHHHHHHHHHHHcCCCcCcEEEEEC
Confidence 47899999986532 11122345555565431 0111 11111 1221 2234455555554554 999998
Q ss_pred CCchHHHHHhHhHhCCccccccccccCCcceEEEeeCc
Q 018199 114 GDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLG 151 (359)
Q Consensus 114 GDGTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~G 151 (359)
| |++.+++-.+.... ...+|+-.+|.=
T Consensus 108 G-G~v~D~ag~vA~~~----------~rGip~I~IPTT 134 (369)
T cd08198 108 G-GAVLDAVGYAAATA----------HRGVRLIRIPTT 134 (369)
T ss_pred C-hHHHHHHHHHHHHh----------cCCCCEEEECCC
Confidence 8 99999987664211 245899999964
No 110
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=66.54 E-value=15 Score=35.38 Aligned_cols=103 Identities=22% Similarity=0.308 Sum_probs=56.8
Q ss_pred CcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEe-cCCc--hHHHHHHHHHHHcCCCEEEEEeCCchHHHHHh
Q 018199 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESL-TSGP--SHAIDITREAIKEGADAVIAVGGDGTLHEVVN 123 (359)
Q Consensus 47 ~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~-t~~~--~~a~~~~~~~~~~~~d~ivv~GGDGTv~evln 123 (359)
+|++|+..+.+. .++++...|++. ++++.++. ...+ ....+.++.+...++|.||++|| |++.++.-
T Consensus 23 ~r~livtd~~~~------~~~~v~~~L~~~---g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~~D~aK 92 (374)
T cd08183 23 RRVLLVTGASSL------RAAWLIEALRAA---GIEVTHVVVAGEPSVELVDAAVAEARNAGCDVVIAIGG-GSVIDAGK 92 (374)
T ss_pred CcEEEEECCchH------HHHHHHHHHHHc---CCeEEEecCCCCcCHHHHHHHHHHHHhcCCCEEEEecC-chHHHHHH
Confidence 789999877652 455666777653 23333322 1122 23444455555678999999999 77777665
Q ss_pred HhH---hCCccccc----c---ccccCCcceEEEeeC--cChhhhhhh
Q 018199 124 GFF---SAGKLVTN----H---NRESAHSTALGLIPL--GTGSDFART 159 (359)
Q Consensus 124 gl~---~~~~~~~~----~---~~~~~~~~~lgiiP~--GTgN~~Ar~ 159 (359)
.+. ..+....+ . .......+|+..||. |||--....
T Consensus 93 ~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagTGSE~t~~ 140 (374)
T cd08183 93 AIAALLPNPGSVLDYLEGVGRGLPLDGPPLPFIAIPTTAGTGSEVTKN 140 (374)
T ss_pred HHHHHHcCCCCHHHHHhccCccccCCCCCCCEEEecCCCchhHHhCCe
Confidence 542 11100000 0 000124578999997 666555443
No 111
>PRK14071 6-phosphofructokinase; Provisional
Probab=65.65 E-value=14 Score=35.36 Aligned_cols=57 Identities=26% Similarity=0.383 Sum_probs=41.0
Q ss_pred HHHHHHHHHHcCCCEEEEEeCCchHHHHHhHhHhCCccccccccccCCcceEEEeeCcChhhhh---hhcCCC
Q 018199 94 AIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFA---RTFGWR 163 (359)
Q Consensus 94 a~~~~~~~~~~~~d~ivv~GGDGTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~GTgN~~A---r~lg~~ 163 (359)
...++..+...+.|.++++|||||+.-+ +.|.+ ...+++--||.==-||+. .++|..
T Consensus 96 ~~~~~~~l~~~~Id~Li~IGGdgS~~~a-~~L~~------------~~~i~vIgiPkTIDNDl~~td~t~Gf~ 155 (360)
T PRK14071 96 SQEIIDGYHSLGLDALIGIGGDGSLAIL-RRLAQ------------QGGINLVGIPKTIDNDVGATEVSIGFD 155 (360)
T ss_pred HHHHHHHHHHcCCCEEEEECChhHHHHH-HHHHH------------hcCCcEEEecccccCCCcCcccCcChh
Confidence 3455556667789999999999998744 44532 126899999998889886 345654
No 112
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=63.59 E-value=5.5 Score=36.82 Aligned_cols=51 Identities=25% Similarity=0.357 Sum_probs=38.6
Q ss_pred HHHHHHHHHcCCCEEEEEeCCchHHHHHhHhHhCCccccccccccCCcceEEEeeCcChhhhhh
Q 018199 95 IDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFAR 158 (359)
Q Consensus 95 ~~~~~~~~~~~~d~ivv~GGDGTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~GTgN~~Ar 158 (359)
.+.++.+...+.|.++++|||||+..+. .|.+ ...+++-.||.=--||+.-
T Consensus 82 ~~~~~~l~~~~Id~Li~IGG~gs~~~a~-~L~~------------~~~i~vigiPkTIDNDi~g 132 (282)
T PF00365_consen 82 KKIVENLKKLGIDALIVIGGDGSMKGAH-KLSE------------EFGIPVIGIPKTIDNDIPG 132 (282)
T ss_dssp HHHHHHHHHTTESEEEEEESHHHHHHHH-HHHH------------HHHSEEEEEEEETTSSCTT
T ss_pred hhHHHHHHHhCCCEEEEecCCCHHHHHH-HHHh------------cCceEEEEEeccccCCcCC
Confidence 3455566667899999999999988764 4532 1248999999988888874
No 113
>PLN02884 6-phosphofructokinase
Probab=63.14 E-value=16 Score=35.69 Aligned_cols=62 Identities=21% Similarity=0.367 Sum_probs=42.0
Q ss_pred HHHHHHHHHHcCCCEEEEEeCCchHHHHHhHhHhCCccccccccccCCcceEEEeeCcChhhhh---hhcCCC
Q 018199 94 AIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFA---RTFGWR 163 (359)
Q Consensus 94 a~~~~~~~~~~~~d~ivv~GGDGTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~GTgN~~A---r~lg~~ 163 (359)
..++++.+...+.|.++++|||||+.-+.. |.+.- .....++++--||.==-||+. .++|..
T Consensus 132 ~~~i~~~L~~~~Id~LivIGGdgS~~~a~~-L~~~~-------~~~g~~i~vIGIPkTIDNDi~~tD~TiGFd 196 (411)
T PLN02884 132 TSDIVDSIEARGINMLFVLGGNGTHAGANA-IHNEC-------RKRKMKVSVVGVPKTIDNDILLMDKTFGFD 196 (411)
T ss_pred HHHHHHHHHHcCCCEEEEECCchHHHHHHH-HHHHH-------HHcCCCceEEeccccccCCCcCcccCCCHH
Confidence 445555666678999999999999976653 32100 001245899999998889986 345554
No 114
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=62.80 E-value=17 Score=30.46 Aligned_cols=33 Identities=27% Similarity=0.433 Sum_probs=23.2
Q ss_pred cCCCEEEEE-eCCchHHHHHhHhHhCCccccccccccCCcceEEEeeC
Q 018199 104 EGADAVIAV-GGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPL 150 (359)
Q Consensus 104 ~~~d~ivv~-GGDGTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~ 150 (359)
+..|++|++ ||=||+.|+...+- .+.|+.+++.
T Consensus 90 ~~sda~IvlpGG~GTL~E~~~a~~--------------~~kpv~~l~~ 123 (159)
T TIGR00725 90 RSADVVVSVGGGYGTAIEILGAYA--------------LGGPVVVLRG 123 (159)
T ss_pred HHCCEEEEcCCchhHHHHHHHHHH--------------cCCCEEEEEC
Confidence 345655554 89999999999873 3467777763
No 115
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=62.41 E-value=25 Score=32.41 Aligned_cols=64 Identities=13% Similarity=0.163 Sum_probs=35.1
Q ss_pred EEcCCCCCCchhhhHHHHHHHHHhccccccceEEEecC------CchHHHHHHHH----HHHcCCCEEEEE-eCCchHH
Q 018199 52 VVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTS------GPSHAIDITRE----AIKEGADAVIAV-GGDGTLH 119 (359)
Q Consensus 52 iiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t~------~~~~a~~~~~~----~~~~~~d~ivv~-GGDGTv~ 119 (359)
|+.|.|+-... +.+++....|++. ++++.+-.+. ..++.++.+++ +...+.++|+++ ||+|+..
T Consensus 3 iiapSs~~~~~-~~~~~~~~~L~~~---G~~v~~~~~~~~~~~~~a~s~~~Ra~dL~~a~~d~~i~aI~~~rGG~ga~r 77 (282)
T cd07025 3 IVAPSSPIDEE-ERLERAIARLESL---GLEVVVGPHVLARDGYLAGTDEERAADLNAAFADPEIKAIWCARGGYGANR 77 (282)
T ss_pred EEeCCCCCCcH-HHHHHHHHHHHhC---CCEEEeccchhhhcCccCCCHHHHHHHHHHHhhCCCCCEEEEcCCcCCHHH
Confidence 68898765432 5566666777764 3333221111 12333333333 334567887766 9999864
No 116
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=60.65 E-value=1e+02 Score=26.96 Aligned_cols=47 Identities=15% Similarity=0.131 Sum_probs=29.8
Q ss_pred ccceEEEecC-CchHHHHHHHHHHHcCCCEEEEEeCCchH-HHHHhHhH
Q 018199 80 DCNICESLTS-GPSHAIDITREAIKEGADAVIAVGGDGTL-HEVVNGFF 126 (359)
Q Consensus 80 ~~~~~~~~t~-~~~~a~~~~~~~~~~~~d~ivv~GGDGTv-~evlngl~ 126 (359)
++++.+..+. .+....+.++++...++|.|++++.+... .+.+..+.
T Consensus 29 g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgvi~~~~~~~~~~~~~~~l~ 77 (267)
T cd01536 29 GVELIVLDAQNDVSKQIQQIEDLIAQGVDGIIISPVDSAALTPALKKAN 77 (267)
T ss_pred CceEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCCchhHHHHHHHHH
Confidence 4555555554 34445566777777789999998877543 23555553
No 117
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=60.01 E-value=18 Score=38.18 Aligned_cols=63 Identities=19% Similarity=0.327 Sum_probs=40.4
Q ss_pred HHHHHHHHHHcCCCEEEEEeCCchHHHHH----------hHhHhCCccccccccccCCcceEEEeeCcChhhhh
Q 018199 94 AIDITREAIKEGADAVIAVGGDGTLHEVV----------NGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFA 157 (359)
Q Consensus 94 a~~~~~~~~~~~~d~ivv~GGDGTv~evl----------ngl~~~~~~~~~~~~~~~~~~~lgiiP~GTgN~~A 157 (359)
-...++.+...+.|.+|++|||||+.-+. ..|.+.++ +..........+++--||.==-||++
T Consensus 86 ~~~a~~~L~~~~Id~LvvIGGdgSl~gA~~l~~e~~~l~~el~~~g~-i~~~~~~~~~~l~vVGiPkTIDNDl~ 158 (762)
T cd00764 86 RLQAAYNLIQRGITNLCVIGGDGSLTGADLFRSEWPSLLEELVKDGK-ITEEEVAKYQHLNIVGMVGSIDNDFC 158 (762)
T ss_pred HHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHhhhHHHHHHHhcCc-ccHHHHhcCCCceEEEeccceeCCCC
Confidence 34455666678899999999999997654 22332221 00001112346788999988889998
No 118
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=59.28 E-value=36 Score=27.59 Aligned_cols=34 Identities=26% Similarity=0.379 Sum_probs=26.1
Q ss_pred HHHHHHHHcCCCEEEEEeCCchHHHHHhHhHhCC
Q 018199 96 DITREAIKEGADAVIAVGGDGTLHEVVNGFFSAG 129 (359)
Q Consensus 96 ~~~~~~~~~~~d~ivv~GGDGTv~evlngl~~~~ 129 (359)
++.+.+....+|.+|++.||+-...+++.+.+.+
T Consensus 90 d~~~~~~~~~~d~ivLvSgD~Df~~~i~~lr~~G 123 (149)
T cd06167 90 DALELAYKRRIDTIVLVSGDSDFVPLVERLRELG 123 (149)
T ss_pred HHHHHhhhcCCCEEEEEECCccHHHHHHHHHHcC
Confidence 3333344457899999999999999999987543
No 119
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=59.17 E-value=21 Score=36.70 Aligned_cols=62 Identities=13% Similarity=0.171 Sum_probs=40.6
Q ss_pred HHHHHHHHHHcCCCEEEEEeCCchHHHHHhHhHhCCccccccccccCCcceEEEeeCcChhhhh-----hhcCCC
Q 018199 94 AIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFA-----RTFGWR 163 (359)
Q Consensus 94 a~~~~~~~~~~~~d~ivv~GGDGTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~GTgN~~A-----r~lg~~ 163 (359)
...+.+.+..-+.|.+|++|||||...+.. |.+.- .....++++--+|.==-||+. .++|+.
T Consensus 162 ~~~i~e~l~~l~Id~LvvIGGddS~~~A~~-Lae~~-------~~~~~~i~VIGIPKTIDNDL~~~~td~s~GFd 228 (610)
T PLN03028 162 VNAALAACEALKLDGLVIIGGVTSNTDAAQ-LAETF-------AEAKCKTKVVGVPVTLNGDLKNQFVETNVGFD 228 (610)
T ss_pred HHHHHHHHHHcCCCEEEEeCCchHHHHHHH-HHHHH-------HHcCCCceEEEeceeeeCCCCCCCCCCCcCHH
Confidence 334444455568899999999999877643 22100 012347889999987789987 455654
No 120
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=58.49 E-value=1.2e+02 Score=26.84 Aligned_cols=61 Identities=10% Similarity=0.114 Sum_probs=35.2
Q ss_pred HHHHHHHHHhccc-cccceEEEecCC--chHHHHHHHHHHHcCCCEEEEEeCCch-HHHHHhHhH
Q 018199 66 WKKLLPYLRSRLS-VDCNICESLTSG--PSHAIDITREAIKEGADAVIAVGGDGT-LHEVVNGFF 126 (359)
Q Consensus 66 ~~~~~~~l~~~~~-~~~~~~~~~t~~--~~~a~~~~~~~~~~~~d~ivv~GGDGT-v~evlngl~ 126 (359)
|.++...+.+... .++++.+..+.+ +....+..+++...+.|.|++++.+.+ +.+.+..+.
T Consensus 15 ~~~~~~g~~~~~~~~g~~v~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~l~~~~ 79 (271)
T cd06312 15 WTVVKNGAEDAAKDLGVDVEYRGPETFDVADMARLIEAAIAAKPDGIVVTIPDPDALDPAIKRAV 79 (271)
T ss_pred HHHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEEeCCChHHhHHHHHHHH
Confidence 4444444433322 234555555543 334445666777789999999998764 455665553
No 121
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=57.55 E-value=62 Score=30.98 Aligned_cols=92 Identities=17% Similarity=0.163 Sum_probs=55.8
Q ss_pred CcEEEEEcCCCCCCchhhhH-HHHHHHHHhccccccceE-EEe-cCCchHHHHHHHHHHHcCCCEEEEEeCCchHHHHHh
Q 018199 47 RDLVFVVNPRGASGRTGKEW-KKLLPYLRSRLSVDCNIC-ESL-TSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVN 123 (359)
Q Consensus 47 ~~~~iiiNP~SG~g~~~~~~-~~~~~~l~~~~~~~~~~~-~~~-t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTv~evln 123 (359)
++.+++.-+.. .+.. +++...|... ++.+. .+. -...++...+++++...++|.|+.+|| |++.+++-
T Consensus 31 ~~~lvv~g~~~-----~~~~~~~~~~~l~~~---g~~~~~~~~~~a~~~ev~~~~~~~~~~~~d~vIGVGG-Gk~iD~aK 101 (360)
T COG0371 31 SRALVVTGENT-----YAIAGEKVEKSLKDE---GLVVHVVFVGEASEEEVERLAAEAGEDGADVVIGVGG-GKTIDTAK 101 (360)
T ss_pred CceEEEEChhH-----HHHHHHHHHHHhccc---CcceeeeecCccCHHHHHHHHHHhcccCCCEEEEecC-cHHHHHHH
Confidence 78888886653 2333 2344455543 12111 122 223344555555544467899999999 99999998
Q ss_pred HhHhCCccccccccccCCcceEEEeeCcChhhhhhh
Q 018199 124 GFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFART 159 (359)
Q Consensus 124 gl~~~~~~~~~~~~~~~~~~~lgiiP~GTgN~~Ar~ 159 (359)
.+.. ..+.|+..+|.=-.+|=..+
T Consensus 102 ~~A~------------~~~~pfIsvPT~AS~Da~~S 125 (360)
T COG0371 102 AAAY------------RLGLPFISVPTIASTDAITS 125 (360)
T ss_pred HHHH------------HcCCCEEEecCccccccccC
Confidence 7753 45789999998766654443
No 122
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=57.55 E-value=25 Score=37.15 Aligned_cols=90 Identities=20% Similarity=0.254 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHHcCCCEEEEEeCCchHHHHHhHhHhCCccccccccccCCcceEEEeeCcChhhhhh---hcCCCCC---
Q 018199 92 SHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFAR---TFGWRND--- 165 (359)
Q Consensus 92 ~~a~~~~~~~~~~~~d~ivv~GGDGTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~GTgN~~Ar---~lg~~~~--- 165 (359)
.+...+++.+...+.|.++++|||||+..+.. |.+.. +.-....+|+-.||.==-||+.- ++|...-
T Consensus 465 ~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~-L~~~~------~~y~~~~i~vVgIPkTIDNDv~gTd~siGfdTAln~ 537 (762)
T cd00764 465 KDLETIAYNFQKYGIDGLIIVGGFEAYKGLLQ-LREAR------EQYEEFCIPMVLIPATVSNNVPGTDFSLGSDTALNA 537 (762)
T ss_pred HHHHHHHHHHHHcCCCEEEEECChhHHHHHHH-HHHHH------hhCCCCCccEEEecccccCCCCCCcCCCCHHHHHHH
Confidence 45556666677788999999999999987653 43210 00012469999999998899872 3444321
Q ss_pred HHHHHHHHHc---CCeeeEeEEEEEc
Q 018199 166 PYEAVERIAK---GVRSWVDVGVING 188 (359)
Q Consensus 166 ~~~al~~i~~---g~~~~iD~~~v~~ 188 (359)
..++++.|.. ...+++-+.++-+
T Consensus 538 ~~~~id~i~~tA~s~~~RvfVVEvMG 563 (762)
T cd00764 538 LMKYCDRIKQSASGTKRRVFIVETMG 563 (762)
T ss_pred HHHHHHHHHHHHhhcCCeEEEEEeCC
Confidence 2344444432 2223555555554
No 123
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=56.37 E-value=1.2e+02 Score=26.93 Aligned_cols=74 Identities=11% Similarity=0.160 Sum_probs=38.8
Q ss_pred cEEEEEcCCCCCCchhhhHHHHHHHHHhccc-cccceEEEec---CCchHHHHHHHHHHHcCCCEEEEEeCCchH-HHHH
Q 018199 48 DLVFVVNPRGASGRTGKEWKKLLPYLRSRLS-VDCNICESLT---SGPSHAIDITREAIKEGADAVIAVGGDGTL-HEVV 122 (359)
Q Consensus 48 ~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~-~~~~~~~~~t---~~~~~a~~~~~~~~~~~~d~ivv~GGDGTv-~evl 122 (359)
|+.+|+ |... ...|.++...+.+.+. .++.+....+ ..+....++.+.+...+.|.|++++.|-.. .+.+
T Consensus 1 ~Igvi~-~~~~----~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgvii~~~~~~~~~~~l 75 (273)
T cd06310 1 KIALVP-KGTT----SDFWQAVKAGAEAAAKELGVKVTFQGPASETDVAGQVNLLENAIARGPDAILLAPTDAKALVPPL 75 (273)
T ss_pred CeEEEe-cCCC----cHHHHHHHHHHHHHHHHcCCEEEEecCccCCCHHHHHHHHHHHHHhCCCEEEEcCCChhhhHHHH
Confidence 466666 4322 2334444444433221 2344443333 233344456666677789999999877542 4566
Q ss_pred hHhH
Q 018199 123 NGFF 126 (359)
Q Consensus 123 ngl~ 126 (359)
..+.
T Consensus 76 ~~~~ 79 (273)
T cd06310 76 KEAK 79 (273)
T ss_pred HHHH
Confidence 5553
No 124
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=56.13 E-value=1.1e+02 Score=27.19 Aligned_cols=77 Identities=19% Similarity=0.204 Sum_probs=36.7
Q ss_pred CCcEEEEEcCCCCCC---chhhhHHHHHHHHHhccc-cccceEEEecCCchHHHHHHHHHHHcCCCEEEEEeCCchHHHH
Q 018199 46 RRDLVFVVNPRGASG---RTGKEWKKLLPYLRSRLS-VDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEV 121 (359)
Q Consensus 46 ~~~~~iiiNP~SG~g---~~~~~~~~~~~~l~~~~~-~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTv~ev 121 (359)
.+.+.||+ |...+. -....|..+...+.+.+. .++.+.+..+... ....+.+.+...++|.|++.+.+..- ..
T Consensus 3 s~~i~vi~-p~~~~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~v~~~~~~-~~~~~~~~l~~~~~dgiii~~~~~~~-~~ 79 (275)
T cd06295 3 TDTIALVV-PEPHERDQSFSDPFFLSLLGGIADALAERGYDLLLSFVSSP-DRDWLARYLASGRADGVILIGQHDQD-PL 79 (275)
T ss_pred ceEEEEEe-cCccccccccCCchHHHHHHHHHHHHHHcCCEEEEEeCCch-hHHHHHHHHHhCCCCEEEEeCCCCCh-HH
Confidence 45566666 654322 112234443333333221 2345544444332 23333333445689999999876542 34
Q ss_pred HhHh
Q 018199 122 VNGF 125 (359)
Q Consensus 122 lngl 125 (359)
++.+
T Consensus 80 ~~~~ 83 (275)
T cd06295 80 PERL 83 (275)
T ss_pred HHHH
Confidence 5554
No 125
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=55.55 E-value=2.5e+02 Score=28.86 Aligned_cols=112 Identities=17% Similarity=0.215 Sum_probs=64.4
Q ss_pred CCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEE-ecCCchHHHHHHHHHHHcCCCEEE-EEeCCchHHHHHh
Q 018199 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICES-LTSGPSHAIDITREAIKEGADAVI-AVGGDGTLHEVVN 123 (359)
Q Consensus 46 ~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~-~t~~~~~a~~~~~~~~~~~~d~iv-v~GGDGTv~evln 123 (359)
..++.||.=-. .-....++....|+.. +..+++.+. .-..+.+..++++++...+.++|| ++|+.+.|--|+.
T Consensus 410 ~~~v~i~~gs~----sd~~~~~~~~~~l~~~-g~~~~~~v~sahr~~~~~~~~~~~~~~~~~~v~i~~ag~~~~l~~~~a 484 (577)
T PLN02948 410 TPLVGIIMGSD----SDLPTMKDAAEILDSF-GVPYEVTIVSAHRTPERMFSYARSAHSRGLQVIIAGAGGAAHLPGMVA 484 (577)
T ss_pred CCeEEEEECch----hhHHHHHHHHHHHHHc-CCCeEEEEECCccCHHHHHHHHHHHHHCCCCEEEEEcCccccchHHHh
Confidence 34466666332 2234456666666653 323333321 234566777888887777777654 5599999999998
Q ss_pred HhHhCCccccccccccCCcceEEEeeCcChhhhhhhcCCCCCHHHHHHHHHcCCeeeEeEEEEE
Q 018199 124 GFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRNDPYEAVERIAKGVRSWVDVGVIN 187 (359)
Q Consensus 124 gl~~~~~~~~~~~~~~~~~~~lgiiP~GTgN~~Ar~lg~~~~~~~al~~i~~g~~~~iD~~~v~ 187 (359)
++ ...|+--+|..++ .| +-.+++..+++ -+.-+.+..++
T Consensus 485 ~~---------------t~~pvi~vp~~~~-----~~----~g~~~l~s~~~-~p~g~pv~~v~ 523 (577)
T PLN02948 485 SM---------------TPLPVIGVPVKTS-----HL----DGLDSLLSIVQ-MPRGVPVATVA 523 (577)
T ss_pred hc---------------cCCCEEEcCCCCC-----CC----CcHHHHHHHhc-CCCCCeEEEEe
Confidence 76 3567766777554 23 22455555554 23333455555
No 126
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=55.36 E-value=1e+02 Score=28.58 Aligned_cols=79 Identities=22% Similarity=0.137 Sum_probs=42.6
Q ss_pred CCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEecCCchHHHHHHHHHHHcCCCEEEEEeCCc-hHHHHHhH
Q 018199 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDG-TLHEVVNG 124 (359)
Q Consensus 46 ~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDG-Tv~evlng 124 (359)
.+++.+|+++.+.-++ ...+.+...+++.. .........+....+....++++...++|+|++. +|+ ....++..
T Consensus 132 ~~~~~~i~~~~~~~g~--~~~~~~~~~~~~~G-~~v~~~~~~~~~~~d~~~~~~~i~~~~pdaV~~~-~~~~~a~~~~~~ 207 (341)
T cd06341 132 GTRAVALVTALSAAVS--AAAALLARSLAAAG-VSVAGIVVITATAPDPTPQAQQAAAAGADAIITV-LDAAVCASVLKA 207 (341)
T ss_pred CcEEEEEEeCCcHHHH--HHHHHHHHHHHHcC-CccccccccCCCCCCHHHHHHHHHhcCCCEEEEe-cChHHHHHHHHH
Confidence 5788888766531222 22333444454431 1111111122233456667777777789988765 566 77777887
Q ss_pred hHhC
Q 018199 125 FFSA 128 (359)
Q Consensus 125 l~~~ 128 (359)
+.+.
T Consensus 208 ~~~~ 211 (341)
T cd06341 208 VRAA 211 (341)
T ss_pred HHHc
Confidence 7654
No 127
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=54.83 E-value=1.5e+02 Score=26.77 Aligned_cols=76 Identities=11% Similarity=0.124 Sum_probs=38.4
Q ss_pred CCCcEEEEEcCCCCCCchhhhHHHHHHHHHhccc-cccceEEEecC-CchHHHHHHHHHHHcCCCEEEEEeCC-chHHHH
Q 018199 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLS-VDCNICESLTS-GPSHAIDITREAIKEGADAVIAVGGD-GTLHEV 121 (359)
Q Consensus 45 ~~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~-~~~~~~~~~t~-~~~~a~~~~~~~~~~~~d~ivv~GGD-GTv~ev 121 (359)
..+.+.+|+ |.... ..|.++...+++.+. .++.+.+..+. .+.......+.+...+.|.|++.+.| .++++.
T Consensus 25 ~~~~I~vi~-~~~~~----~f~~~~~~~i~~~~~~~G~~~~~~~~~~d~~~~~~~~~~l~~~~~dgiii~~~~~~~~~~~ 99 (295)
T PRK10653 25 AKDTIALVV-STLNN----PFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNA 99 (295)
T ss_pred cCCeEEEEe-cCCCC----hHHHHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCChHHHHHH
Confidence 455666665 54322 234444433333322 23444443333 23334455556666789988887765 334455
Q ss_pred HhHh
Q 018199 122 VNGF 125 (359)
Q Consensus 122 lngl 125 (359)
+..+
T Consensus 100 l~~~ 103 (295)
T PRK10653 100 VKMA 103 (295)
T ss_pred HHHH
Confidence 5544
No 128
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=53.24 E-value=1.5e+02 Score=26.32 Aligned_cols=32 Identities=19% Similarity=0.144 Sum_probs=21.4
Q ss_pred HHHHHHHHHcCCCEEEEEeCCc-hHHHHHhHhH
Q 018199 95 IDITREAIKEGADAVIAVGGDG-TLHEVVNGFF 126 (359)
Q Consensus 95 ~~~~~~~~~~~~d~ivv~GGDG-Tv~evlngl~ 126 (359)
.+..+.+...+.|.|++.+.|- .+.+.+..+.
T Consensus 45 ~~~i~~~~~~~~Dgiii~~~~~~~~~~~i~~~~ 77 (282)
T cd06318 45 IADVEDLLTRGVNVLIINPVDPEGLVPAVAAAK 77 (282)
T ss_pred HHHHHHHHHcCCCEEEEecCCccchHHHHHHHH
Confidence 3456667778899999988763 3345555553
No 129
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=53.20 E-value=1.6e+02 Score=26.09 Aligned_cols=35 Identities=29% Similarity=0.358 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHcCCCEEEEEeCCch-HHHHHhHhH
Q 018199 92 SHAIDITREAIKEGADAVIAVGGDGT-LHEVVNGFF 126 (359)
Q Consensus 92 ~~a~~~~~~~~~~~~d~ivv~GGDGT-v~evlngl~ 126 (359)
....+..+++...++|.|++.+.|-. +.++++.+.
T Consensus 47 ~~~~~~~~~~~~~~vdgiIi~~~~~~~~~~~l~~~~ 82 (272)
T cd06300 47 AQQIADIRNLIAQGVDAIIINPASPTALNPVIEEAC 82 (272)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHHH
Confidence 33456667777789999999998853 455666653
No 130
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=53.09 E-value=47 Score=31.99 Aligned_cols=108 Identities=16% Similarity=0.112 Sum_probs=57.1
Q ss_pred CCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEe--cCCc--hHHHHHHHHHHHcCCCEEEEEeCCchHHHH
Q 018199 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESL--TSGP--SHAIDITREAIKEGADAVIAVGGDGTLHEV 121 (359)
Q Consensus 46 ~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~--t~~~--~~a~~~~~~~~~~~~d~ivv~GGDGTv~ev 121 (359)
.+|++|+..+..-+ ...++++...|++. ++++.++. ...+ ....+.++.+...++|.||++|| |++-++
T Consensus 29 ~~r~lvvt~~~~~~---~g~~~~v~~~L~~~---~i~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiaiGG-GSviD~ 101 (379)
T TIGR02638 29 FKKALVVTDKDLIK---FGVADKVTDLLDEA---GIAYELFDEVKPNPTITVVKAGVAAFKASGADYLIAIGG-GSPIDT 101 (379)
T ss_pred CCEEEEEcCcchhh---ccchHHHHHHHHHC---CCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-hHHHHH
Confidence 37899988765421 12455666777653 23343332 1122 33445555555678999999999 777776
Q ss_pred HhHhH---hCC--ccccc---cccccCCcceEEEeeC--cChhhhhhhc
Q 018199 122 VNGFF---SAG--KLVTN---HNRESAHSTALGLIPL--GTGSDFARTF 160 (359)
Q Consensus 122 lngl~---~~~--~~~~~---~~~~~~~~~~lgiiP~--GTgN~~Ar~l 160 (359)
.-++. ..+ ....+ ........+|+..||. |||--.....
T Consensus 102 aKaia~~~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTTagTGse~t~~a 150 (379)
T TIGR02638 102 AKAIGIISNNPEFADVRSLEGVAPTKKPGVPIIAIPTTAGTAAEVTINY 150 (379)
T ss_pred HHHHHHHHhCCCCCCHHHhhCCCccCCCCCCEEEECCCCchhhhhCCEE
Confidence 64432 111 00000 0001124578999997 6654444433
No 131
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=53.02 E-value=1.1e+02 Score=27.31 Aligned_cols=65 Identities=14% Similarity=0.216 Sum_probs=35.9
Q ss_pred CCCCCcEEEEEcCCCC-----CCchhhhHHHHHHHHHhccccccceEEEecCCchHHHHHHHHHHHc----CCCEEE
Q 018199 43 SSRRRDLVFVVNPRGA-----SGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKE----GADAVI 110 (359)
Q Consensus 43 ~~~~~~~~iiiNP~SG-----~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~----~~d~iv 110 (359)
.+.++++.+|||-..= ...+.+..+.+...|++. ++++++..--...+..+.++++... ++|.++
T Consensus 4 ~~~p~g~alII~n~~f~~~~~r~g~~~D~~~l~~~f~~l---gF~V~~~~dlt~~em~~~l~~~~~~~~~~~~d~~v 77 (241)
T smart00115 4 NSKPRGLALIINNENFHSLPRRNGTDVDAENLTELFQSL---GYEVHVKNNLTAEEMLEELKEFAERPEHSDSDSFV 77 (241)
T ss_pred CCCCCcEEEEEECccCCCCcCCCCcHHHHHHHHHHHHHC---CCEEEEecCCCHHHHHHHHHHHHhccccCCCCEEE
Confidence 5667888888886531 111223345566666653 3555554444555666666665542 466543
No 132
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=52.87 E-value=27 Score=36.89 Aligned_cols=68 Identities=25% Similarity=0.419 Sum_probs=41.5
Q ss_pred HHHHHHHHHcCCCEEEEEeCCchHHHHH----------hHhHhCCccccccccccCCcceEEEeeCcChhhhhh---hcC
Q 018199 95 IDITREAIKEGADAVIAVGGDGTLHEVV----------NGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFAR---TFG 161 (359)
Q Consensus 95 ~~~~~~~~~~~~d~ivv~GGDGTv~evl----------ngl~~~~~~~~~~~~~~~~~~~lgiiP~GTgN~~Ar---~lg 161 (359)
...++.+...+.|.+|++|||||+.-+. ..|.+.++. ..........+++.-||.==-||+.- ++|
T Consensus 84 ~~~~~~L~~~~Id~LivIGGdgS~~~a~~l~~e~~~~~~~l~~~~~i-~~~~~~~~~~l~vvGiPkTIDNDl~gTd~TiG 162 (745)
T TIGR02478 84 LKAARNLIKRGIDNLVVIGGDGSLTGADLFREEWPSLLEELVDTGKI-TAEQAEEHRHLTIVGLVGSIDNDMCGTDMTIG 162 (745)
T ss_pred HHHHHHHHHhCCCEEEEECChhHHHHHHHHHHHhHHHHHHHHHccch-hHHHHhcCCCCcEEEEccccccCCCCCcCCCC
Confidence 3455566677899999999999987654 223222110 00001123478899999655899883 355
Q ss_pred CC
Q 018199 162 WR 163 (359)
Q Consensus 162 ~~ 163 (359)
..
T Consensus 163 fd 164 (745)
T TIGR02478 163 AD 164 (745)
T ss_pred HH
Confidence 44
No 133
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=52.52 E-value=30 Score=35.06 Aligned_cols=57 Identities=16% Similarity=0.124 Sum_probs=38.2
Q ss_pred HHHHHHHHHHcCCCEEEEEeCCchHHHHHhHhHhCCccccccccccCCcceEEEeeCcChhhhhh
Q 018199 94 AIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFAR 158 (359)
Q Consensus 94 a~~~~~~~~~~~~d~ivv~GGDGTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~GTgN~~Ar 158 (359)
....++.+..-+.|.+|++|||||+..+.. |.+.- .....++++--+|.==-||+..
T Consensus 150 ~~~~~~~l~~~~Id~LviIGGdgS~~~A~~-Lae~~-------~~~g~~i~VIGIPkTIDNDl~~ 206 (539)
T TIGR02477 150 FAKALTTAKKLKLDGLVIIGGDDSNTNAAL-LAEYF-------AKHGLKTQVIGVPKTIDGDLKN 206 (539)
T ss_pred HHHHHHHHHHcCCCEEEEeCCchHHHHHHH-HHHHH-------HhcCCCceEEEEeeeecCCCCC
Confidence 334444555678999999999999876653 22100 0123568888999877899874
No 134
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=52.09 E-value=34 Score=34.80 Aligned_cols=63 Identities=16% Similarity=0.203 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHcCCCEEEEEeCCchHHHHHhHhHhCCccccccccccCCcceEEEeeCcChhhhh-----hhcCCC
Q 018199 93 HAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFA-----RTFGWR 163 (359)
Q Consensus 93 ~a~~~~~~~~~~~~d~ivv~GGDGTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~GTgN~~A-----r~lg~~ 163 (359)
+....++.+..-+.|.+|++|||||+..+.. |.+.- .....++++--+|.==-||+. .++|..
T Consensus 152 ~~~~i~~~l~~~~Id~LviIGGd~S~~~A~~-Lae~~-------~~~~~~i~VIGIPkTIDNDl~~~~id~s~GFd 219 (555)
T PRK07085 152 QKEACLETVKKLKLDGLVIIGGDDSNTNAAI-LAEYF-------AKHGCKTQVIGVPKTIDGDLKNEFIETSFGFD 219 (555)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCchHHHHHHH-HHHHH-------HHhCCCccEEEEeeeecCCCCCCcccccCCHH
Confidence 3444455555678999999999999977653 32210 012357899999988789986 355654
No 135
>PF11711 Tim54: Inner membrane protein import complex subunit Tim54; InterPro: IPR021056 Mitochondrial function depends on the import of hundreds of different proteins synthesised in the cytosol. Protein import is a multi-step pathway which includes the binding of precursor proteins to surface receptors, translocation of the precursor across one or both mitochondrial membranes, and folding and assembly of the imported protein inside the mitochondrion. Most precursor proteins carry amino-terminal targeting signals, called pre-sequences, and are imported into mitochondria via import complexes located in both the outer and the inner membrane (IM). The IM complex, TIM, is made up of at least two proteins which mediate translocation of proteins into the matrix by removing their signal peptide and another pair of proteins, Tim54 and Tim22, that insert the polytopic proteins, that carry internal targeting information, into the inner membrane [].
Probab=51.80 E-value=58 Score=31.47 Aligned_cols=68 Identities=10% Similarity=0.043 Sum_probs=50.7
Q ss_pred ccccCCCC-CCC-CCCCCCCCCCcEEEEEcCCCCCC--chhhhHHH-HHHHHHhccccccceEEEecCCchHHHHH
Q 018199 27 MALDLSPN-PIS-HGAASSSRRRDLVFVVNPRGASG--RTGKEWKK-LLPYLRSRLSVDCNICESLTSGPSHAIDI 97 (359)
Q Consensus 27 ~~~~~~~~-~~~-~~~~~~~~~~~~~iiiNP~SG~g--~~~~~~~~-~~~~l~~~~~~~~~~~~~~t~~~~~a~~~ 97 (359)
.+.||... .++ ++.+....+||+.|++.|--|.+ .+.+.|++ +.|+|.++ +++|+++....+|+.+..
T Consensus 46 ~~k~~~~V~~la~epl~~~~~PRKlTVy~a~pPgD~l~~a~~~Fr~YVKPIL~Aa---glDyevv~g~rqGdIr~~ 118 (382)
T PF11711_consen 46 RQKWCDKVKHLAEEPLPPDELPRKLTVYIAPPPGDGLDVARKYFREYVKPILVAA---GLDYEVVEGRRQGDIRAK 118 (382)
T ss_pred HHHHHHHHHHHhhCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHHHHHHHHhh---ccceEEeccccccHHHHH
Confidence 44577666 555 56677889999999999988776 45566887 56888764 578888888888876543
No 136
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=51.63 E-value=1.7e+02 Score=25.81 Aligned_cols=47 Identities=21% Similarity=0.234 Sum_probs=28.5
Q ss_pred ccceEEEecCC-chHHHHHHHHHHHcCCCEEEEEeCCc-hHHHHHhHhH
Q 018199 80 DCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDG-TLHEVVNGFF 126 (359)
Q Consensus 80 ~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDG-Tv~evlngl~ 126 (359)
++.+.+..+.. +....+..+.+...++|.||+..+|. +..+++..+.
T Consensus 29 g~~~~~~~~~~~~~~~~~~l~~~~~~~vdgii~~~~~~~~~~~~i~~~~ 77 (273)
T cd06305 29 GGDLRVYDAGGDDAKQADQIDQAIAQKVDAIIIQHGRAEVLKPWVKRAL 77 (273)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChhhhHHHHHHHH
Confidence 34554444432 22233455566677899999998875 4567776654
No 137
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=51.40 E-value=1.1e+02 Score=27.86 Aligned_cols=19 Identities=32% Similarity=0.310 Sum_probs=16.3
Q ss_pred cCCCEEEEEeCCchHHHHHh
Q 018199 104 EGADAVIAVGGDGTLHEVVN 123 (359)
Q Consensus 104 ~~~d~ivv~GGDGTv~evln 123 (359)
...|.+|..|| +|+.|++.
T Consensus 240 ~~aDl~Is~~G-~T~~E~~a 258 (279)
T TIGR03590 240 NEADLAIGAAG-STSWERCC 258 (279)
T ss_pred HHCCEEEECCc-hHHHHHHH
Confidence 35789999999 99999885
No 138
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=51.13 E-value=1.7e+02 Score=26.42 Aligned_cols=63 Identities=21% Similarity=0.386 Sum_probs=36.6
Q ss_pred hhHHHHHHHHHhccc-cccceEEEecCC-chHHHHHHHHHHHcCCCEEEEEeCCch-HHHHHhHhH
Q 018199 64 KEWKKLLPYLRSRLS-VDCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGT-LHEVVNGFF 126 (359)
Q Consensus 64 ~~~~~~~~~l~~~~~-~~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGT-v~evlngl~ 126 (359)
..|..+...+.+.+. .++++.+..+.. +....+..+++...++|.|++.+.|.+ +.+.+..+.
T Consensus 12 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~l~~l~ 77 (288)
T cd01538 12 ERWIRDRPNFEAALKELGAEVIVQNANGDPAKQISQIENMIAKGVDVLVIAPVDGEALASAVEKAA 77 (288)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChhhHHHHHHHHH
Confidence 345544444443321 234554444442 333446667777789999999988875 466666653
No 139
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=51.12 E-value=34 Score=34.76 Aligned_cols=58 Identities=19% Similarity=0.192 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHcCCCEEEEEeCCchHHHHHhHhHhCCccccccccccCCcceEEEeeCcChhhhhh
Q 018199 93 HAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFAR 158 (359)
Q Consensus 93 ~a~~~~~~~~~~~~d~ivv~GGDGTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~GTgN~~Ar 158 (359)
+...+.+.+..-+.|.+|++|||||...+.. |.+.- .....++++--+|.==-||+..
T Consensus 154 ~~~~i~~~l~~~~Id~LviIGGddS~~~A~~-Lae~~-------~~~g~~i~VIGVPKTIDNDl~~ 211 (550)
T cd00765 154 QFKQAEETAKKLDLDALVVIGGDDSNTNAAL-LAENF-------RSKGLKTRVIGVPKTIDGDLKN 211 (550)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCchHHHHHHH-HHHHH-------HhcCCCceEEEEeeeecCCCCC
Confidence 3344444455678999999999999876653 22100 0123468888999888899985
No 140
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=50.82 E-value=1.7e+02 Score=25.37 Aligned_cols=61 Identities=13% Similarity=0.111 Sum_probs=38.4
Q ss_pred ccceEEEecCC-chHHHHHHHHHHHcCCCEEEEEeCCchHHHHHhHhHhCCccccccccccCCcceEEEeeCcCh
Q 018199 80 DCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTG 153 (359)
Q Consensus 80 ~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~GTg 153 (359)
++++....+.. +....+.++++...++|.||+.+.+.+....+..+. ..++|+-.+...+.
T Consensus 29 g~~l~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~~~~l~-------------~~~ip~v~~~~~~~ 90 (264)
T cd01537 29 GYQVLLANSQNDAEKQLSALENLIARGVDGIIIAPSDLTAPTIVKLAR-------------KAGIPVVLVDRDIP 90 (264)
T ss_pred CCeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCCcchhHHHHhh-------------hcCCCEEEeccCCC
Confidence 35555444443 234566777777788999999988876554454442 34577777766544
No 141
>PRK05948 precorrin-2 methyltransferase; Provisional
Probab=50.64 E-value=1.5e+02 Score=26.62 Aligned_cols=57 Identities=19% Similarity=0.167 Sum_probs=37.2
Q ss_pred HHHcCCCEEEEEeCCchHHHHHhHhHhCCccccccccccCCcceEEEeeC-cChhhhhhhcCCCC
Q 018199 101 AIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPL-GTGSDFARTFGWRN 164 (359)
Q Consensus 101 ~~~~~~d~ivv~GGDGTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~-GTgN~~Ar~lg~~~ 164 (359)
...++-+++++..||=++......+++.- ......+++=++|+ -+.+..|..+|+|.
T Consensus 88 ~~~~g~~v~~l~~GDp~~ys~~~~l~~~l-------~~~~~~~~veivPGIss~~a~aa~~g~pL 145 (238)
T PRK05948 88 YLEQGEDVAFACEGDVSFYSTFTYLAQTL-------QELYPQVAIQTIPGVCSPLAAAAALGIPL 145 (238)
T ss_pred HHHcCCeEEEEeCCChHHHHHHHHHHHHH-------HhcCCCCCEEEECChhHHHHHHHHhCCCe
Confidence 34567789999999966655554443210 00113578889998 57777788888874
No 142
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=49.85 E-value=1.6e+02 Score=25.20 Aligned_cols=46 Identities=17% Similarity=0.248 Sum_probs=30.8
Q ss_pred ccceEEEecCCc-hHHHHHHHHHHHcCCCEEEEEeCCchHHHHHhHh
Q 018199 80 DCNICESLTSGP-SHAIDITREAIKEGADAVIAVGGDGTLHEVVNGF 125 (359)
Q Consensus 80 ~~~~~~~~t~~~-~~a~~~~~~~~~~~~d~ivv~GGDGTv~evlngl 125 (359)
.+++....+... ....+.++++..+++|.|+..+.+.+...++..+
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~~~~~ 78 (269)
T cd01391 32 GLEVILADSQSDPERALEALRDLIQQGVDGIIGPPSSSSALAVVELA 78 (269)
T ss_pred ceEEEEecCCCCHHHHHHHHHHHHHcCCCEEEecCCCHHHHHHHHHH
Confidence 345544445443 3566677777778899999998887776555544
No 143
>PRK06756 flavodoxin; Provisional
Probab=49.71 E-value=1.4e+02 Score=24.18 Aligned_cols=69 Identities=25% Similarity=0.273 Sum_probs=37.1
Q ss_pred CCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEecCCchHHHHHHHHHHHcCCCEEEEEe---CCchHHHHH
Q 018199 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVG---GDGTLHEVV 122 (359)
Q Consensus 46 ~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~G---GDGTv~evl 122 (359)
|++++||+= |..|...+..+.+...+++. +..+.+......... . ...++|.|+++- |+|.+...+
T Consensus 1 mmkv~IiY~--S~tGnTe~vA~~ia~~l~~~---g~~v~~~~~~~~~~~----~--~~~~~d~vi~gspt~~~g~~p~~~ 69 (148)
T PRK06756 1 MSKLVMIFA--SMSGNTEEMADHIAGVIRET---ENEIEVIDIMDSPEA----S--ILEQYDGIILGAYTWGDGDLPDDF 69 (148)
T ss_pred CceEEEEEE--CCCchHHHHHHHHHHHHhhc---CCeEEEeehhccCCH----H--HHhcCCeEEEEeCCCCCCCCcHHH
Confidence 458889984 45567777777777777643 233333222111111 1 124578776663 677666533
Q ss_pred hHh
Q 018199 123 NGF 125 (359)
Q Consensus 123 ngl 125 (359)
..+
T Consensus 70 ~~f 72 (148)
T PRK06756 70 LDF 72 (148)
T ss_pred HHH
Confidence 333
No 144
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=49.58 E-value=23 Score=24.79 Aligned_cols=34 Identities=24% Similarity=0.337 Sum_probs=23.3
Q ss_pred EEEEEeccCCCCceEEecCCCCCccceEEE-EeCCee
Q 018199 320 SIEVEDISSGDSIYVQSDGEHLGFLPRKLC-VLPAAI 355 (359)
Q Consensus 320 ~i~i~~~~~~~~~~~~iDGE~~~~~p~~i~-v~p~~l 355 (359)
.+.|.+ ..+...+.+||+.++.+|+.+. +-++.-
T Consensus 3 ~l~V~s--~p~gA~V~vdg~~~G~tp~~~~~l~~G~~ 37 (71)
T PF08308_consen 3 TLRVTS--NPSGAEVYVDGKYIGTTPLTLKDLPPGEH 37 (71)
T ss_pred EEEEEE--ECCCCEEEECCEEeccCcceeeecCCccE
Confidence 345554 2456788999999998888777 444443
No 145
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=49.28 E-value=30 Score=36.57 Aligned_cols=65 Identities=15% Similarity=0.197 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHcCCCEEEEEeCCchHHHHHhHhHhCCccccccccccCCcceEEEeeCcChhhhh---hhcCCC
Q 018199 92 SHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFA---RTFGWR 163 (359)
Q Consensus 92 ~~a~~~~~~~~~~~~d~ivv~GGDGTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~GTgN~~A---r~lg~~ 163 (359)
.+...+++.+...+.|.++++|||||+..+.. |.+.. +.-....+|+-.||.==-||+. .++|..
T Consensus 465 ~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~-L~~~~------~~~~~~~i~vvgIPkTIDNDi~gtd~t~Gfd 532 (745)
T TIGR02478 465 KDLGMIAYYFQKHKIDGLLIIGGFEAFEALLQ-LEQAR------EKYPAFRIPMVVIPATISNNVPGTEYSLGSD 532 (745)
T ss_pred hHHHHHHHHHHHcCCCEEEEeCChHHHHHHHH-HHHHH------hhCCCCCccEEEecccccCCCCCCccCCCHH
Confidence 34555666666778999999999999986654 32100 0001246899999998889987 345543
No 146
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=48.91 E-value=58 Score=31.62 Aligned_cols=110 Identities=17% Similarity=0.190 Sum_probs=56.5
Q ss_pred CCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEe--cCCc--hHHHHHHHHHHHcCCCEEEEEeCCchHHHH
Q 018199 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESL--TSGP--SHAIDITREAIKEGADAVIAVGGDGTLHEV 121 (359)
Q Consensus 46 ~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~--t~~~--~~a~~~~~~~~~~~~d~ivv~GGDGTv~ev 121 (359)
.++++|+.-+.. .....++++...|++. ++.+.++. +..+ ....+.++.+...++|.||++|| |++-++
T Consensus 49 ~~~~lvv~~~~~---~~~g~~~~v~~~L~~~---gi~~~~~~~v~~~P~~~~v~~~~~~~r~~~~D~IiavGG-GS~iD~ 121 (395)
T PRK15454 49 LKHLFVMADSFL---HQAGMTAGLTRSLAVK---GIAMTLWPCPVGEPCITDVCAAVAQLRESGCDGVIAFGG-GSVLDA 121 (395)
T ss_pred CCEEEEEcCcch---hhCccHHHHHHHHHHc---CCeEEEECCCCCCcCHHHHHHHHHHHHhcCcCEEEEeCC-hHHHHH
Confidence 366676654432 1123456677777653 33443331 2222 33455555566678999999999 555555
Q ss_pred HhHh---HhCCcc-ccc--cccccCCcceEEEeeC--cChhhhhhhcCC
Q 018199 122 VNGF---FSAGKL-VTN--HNRESAHSTALGLIPL--GTGSDFARTFGW 162 (359)
Q Consensus 122 lngl---~~~~~~-~~~--~~~~~~~~~~lgiiP~--GTgN~~Ar~lg~ 162 (359)
.-++ +..+.. ... ........+|+..||. |||--..+.--+
T Consensus 122 AKaia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTtaGTGSE~t~~avi 170 (395)
T PRK15454 122 AKAVALLVTNPDSTLAEMSETSVLQPRLPLIAIPTTAGTGSETTNVTVI 170 (395)
T ss_pred HHHHHHHHhCCCccHHHHhcccccCCCCCEEEECCCCcchhhhCCeEEE
Confidence 4332 222100 000 0001123578999997 676655554433
No 147
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=47.63 E-value=57 Score=30.47 Aligned_cols=67 Identities=15% Similarity=0.208 Sum_probs=35.0
Q ss_pred EEEEcCCCCCCch-hhhHHHHHHHHHhccccccceEEEecCC------chHHH----HHHHHHHHcCCCEEEEE-eCCch
Q 018199 50 VFVVNPRGASGRT-GKEWKKLLPYLRSRLSVDCNICESLTSG------PSHAI----DITREAIKEGADAVIAV-GGDGT 117 (359)
Q Consensus 50 ~iiiNP~SG~g~~-~~~~~~~~~~l~~~~~~~~~~~~~~t~~------~~~a~----~~~~~~~~~~~d~ivv~-GGDGT 117 (359)
.-|+.|.|+-... ...+++-...|++. ++++.+-.+.. ++..+ ++.+.+...+.++|+++ ||+|+
T Consensus 3 I~ivAPS~~~~~~~~~~~~~~~~~L~~~---G~~v~~~~~~~~~~~~~ag~~~~Ra~dL~~a~~Dp~i~aI~~~rGG~g~ 79 (308)
T cd07062 3 IAVVSPSSGIPGELPHRLERAKKRLENL---GFEVVEGPNALKGDKYLSASPEERAEELMAAFADPSIKAIIPTIGGDDS 79 (308)
T ss_pred EEEEeCCCCCcccCHHHHHHHHHHHHhC---CCEEEEecccccccccccCCHHHHHHHHHHHhcCCCCCEEEECCcccCH
Confidence 3468898764321 34455556667654 33433322211 22233 33333334567888766 99997
Q ss_pred HH
Q 018199 118 LH 119 (359)
Q Consensus 118 v~ 119 (359)
..
T Consensus 80 ~r 81 (308)
T cd07062 80 NE 81 (308)
T ss_pred hh
Confidence 64
No 148
>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=47.40 E-value=2.2e+02 Score=25.89 Aligned_cols=77 Identities=12% Similarity=0.073 Sum_probs=40.5
Q ss_pred CCCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceE--EEecCCchHHHHHHHHHHHcCCCEEEEEeCCchHHHHH
Q 018199 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNIC--ESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVV 122 (359)
Q Consensus 45 ~~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~--~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTv~evl 122 (359)
..+++.+|..+.. .+ ....+.+...+++. +..+. ........+....+.++...+.|.|++.+-+...-.++
T Consensus 132 g~~~vail~~~~~-~~--~~~~~~~~~~~~~~---G~~v~~~~~~~~~~~d~~~~~~~l~~~~pdaIi~~~~~~~~~~~~ 205 (312)
T cd06333 132 GVKTVAFIGFSDA-YG--ESGLKELKALAPKY---GIEVVADERYGRTDTSVTAQLLKIRAARPDAVLIWGSGTPAALPA 205 (312)
T ss_pred CCCEEEEEecCcH-HH--HHHHHHHHHHHHHc---CCEEEEEEeeCCCCcCHHHHHHHHHhCCCCEEEEecCCcHHHHHH
Confidence 4678888876432 22 22233344445443 22221 11111222444455555556789888877555566688
Q ss_pred hHhHh
Q 018199 123 NGFFS 127 (359)
Q Consensus 123 ngl~~ 127 (359)
+.+.+
T Consensus 206 ~~l~~ 210 (312)
T cd06333 206 KNLRE 210 (312)
T ss_pred HHHHH
Confidence 88764
No 149
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=47.05 E-value=1.6e+02 Score=24.19 Aligned_cols=85 Identities=21% Similarity=0.188 Sum_probs=48.2
Q ss_pred EEecCCchHHHHHHHHHHHcCCCEEEEEeCCchHHHHHhHhHhCCccccccccccCCcce---EEEeeCcCh-----hhh
Q 018199 85 ESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTA---LGLIPLGTG-----SDF 156 (359)
Q Consensus 85 ~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTv~evlngl~~~~~~~~~~~~~~~~~~~---lgiiP~GTg-----N~~ 156 (359)
++.+.--..-.+.++++.++..|+|++++=||-=.+.+-++.+.-+ .....++. =|+||.+.- ..+
T Consensus 43 Vi~~g~~~tp~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~lr------e~G~~~i~v~~GGvip~~d~~~l~~~G~ 116 (143)
T COG2185 43 VINLGLFQTPEEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEALR------EAGVEDILVVVGGVIPPGDYQELKEMGV 116 (143)
T ss_pred EEecCCcCCHHHHHHHHHhcCCCEEEEEeccchHHHHHHHHHHHHH------HhCCcceEEeecCccCchhHHHHHHhCc
Confidence 3443333334567777788899999999988855554444433110 01122333 257777762 334
Q ss_pred hhhcCCCCCHHHHHHHHHc
Q 018199 157 ARTFGWRNDPYEAVERIAK 175 (359)
Q Consensus 157 Ar~lg~~~~~~~al~~i~~ 175 (359)
++.++-..+..+++..+++
T Consensus 117 ~~if~pgt~~~~~~~~v~~ 135 (143)
T COG2185 117 DRIFGPGTPIEEALSDLLT 135 (143)
T ss_pred ceeeCCCCCHHHHHHHHHH
Confidence 4555555566777766654
No 150
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=46.49 E-value=1e+02 Score=25.38 Aligned_cols=31 Identities=23% Similarity=0.386 Sum_probs=19.9
Q ss_pred EecCCchHHHHHHHHHHHc-CCCEEEEEeCCc
Q 018199 86 SLTSGPSHAIDITREAIKE-GADAVIAVGGDG 116 (359)
Q Consensus 86 ~~t~~~~~a~~~~~~~~~~-~~d~ivv~GGDG 116 (359)
+..+.++...+..+++..+ ++|.|+..||=|
T Consensus 41 ~v~Dd~~~i~~~l~~~~~~~~~DlVittGG~s 72 (152)
T cd00886 41 IVPDDKDEIREALIEWADEDGVDLILTTGGTG 72 (152)
T ss_pred EcCCCHHHHHHHHHHHHhcCCCCEEEECCCcC
Confidence 3455555555555555432 799999999944
No 151
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=46.28 E-value=98 Score=29.92 Aligned_cols=112 Identities=18% Similarity=0.131 Sum_probs=64.8
Q ss_pred CCCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEecCCc----hHHHHHHHHHHHcCCCEEEEEeCCchHHH
Q 018199 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGP----SHAIDITREAIKEGADAVIAVGGDGTLHE 120 (359)
Q Consensus 45 ~~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t~~~----~~a~~~~~~~~~~~~d~ivv~GGDGTv~e 120 (359)
..+|.+|+.-|.- ......+++...|... ++++.++.--.+ ....+-+..+...++|.||++|| |+.-+
T Consensus 28 g~~r~liVTd~~~---~~~g~~~~v~~~L~~~---~i~~~if~~v~p~P~~~~v~~~~~~~~~~~~D~iIalGG-GS~~D 100 (377)
T COG1454 28 GAKRALIVTDRGL---AKLGLLDKVLDSLDAA---GIEYEVFDEVEPEPTIETVEAGAEVAREFGPDTIIALGG-GSVID 100 (377)
T ss_pred CCCceEEEECCcc---ccchhHHHHHHHHHhc---CCeEEEecCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-ccHHH
Confidence 3489999998863 2234566777777764 234444322112 12333444555678999999999 77766
Q ss_pred HHhHhHhCCcccc------ccccccCCcceEEEeeC--cChhhhhhhcCCC
Q 018199 121 VVNGFFSAGKLVT------NHNRESAHSTALGLIPL--GTGSDFARTFGWR 163 (359)
Q Consensus 121 vlngl~~~~~~~~------~~~~~~~~~~~lgiiP~--GTgN~~Ar~lg~~ 163 (359)
++-++.-...... +.+.....+.|+.-||. |||-...+..-+.
T Consensus 101 ~AK~i~~~~~~~~~~~~~~~i~~~~~~~~plIaIPTTaGTGSEvT~~aVit 151 (377)
T COG1454 101 AAKAIALLAENPGSVLDYEGIGKVKKPKAPLIAIPTTAGTGSEVTPFAVIT 151 (377)
T ss_pred HHHHHHHHhhCCchhhhhcccccccCCCCCEEEecCCCcchhhhcCeEEEE
Confidence 6655422110000 00000223488999996 8888887776665
No 152
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=46.13 E-value=1.2e+02 Score=29.73 Aligned_cols=73 Identities=18% Similarity=0.321 Sum_probs=48.5
Q ss_pred CCCCCCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEecC--CchHHHHHHHHHH----HcCCCEEEEEeCC
Q 018199 42 SSSRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTS--GPSHAIDITREAI----KEGADAVIAVGGD 115 (359)
Q Consensus 42 ~~~~~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t~--~~~~a~~~~~~~~----~~~~d~ivv~GGD 115 (359)
-..-|+++.||-.|.+ ..+..+...++.++. .+++.++.|. +.+-+.++++... ...+|+||++=|=
T Consensus 131 LP~~p~~IGVITS~tg------AairDIl~~~~rR~P-~~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGG 203 (440)
T COG1570 131 LPFFPKKIGVITSPTG------AALRDILHTLSRRFP-SVEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGG 203 (440)
T ss_pred CCCCCCeEEEEcCCch------HHHHHHHHHHHhhCC-CCeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCc
Confidence 3445789999998874 446677788887764 3566666555 3344455554432 2458999999999
Q ss_pred chHHHH
Q 018199 116 GTLHEV 121 (359)
Q Consensus 116 GTv~ev 121 (359)
|++-+.
T Consensus 204 GSiEDL 209 (440)
T COG1570 204 GSIEDL 209 (440)
T ss_pred chHHHH
Confidence 999543
No 153
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=45.90 E-value=52 Score=31.66 Aligned_cols=106 Identities=19% Similarity=0.316 Sum_probs=55.0
Q ss_pred CCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEe--cCC--chHHHHHHHHHHHcCCCEEEEEeCCchHHHH
Q 018199 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESL--TSG--PSHAIDITREAIKEGADAVIAVGGDGTLHEV 121 (359)
Q Consensus 46 ~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~--t~~--~~~a~~~~~~~~~~~~d~ivv~GGDGTv~ev 121 (359)
.+|++|+..+..-+ ...++++...|.+. +.++.++. ... ..+..+.+..+...+.|.||++|| |++-++
T Consensus 28 ~~~~livt~~~~~~---~~~~~~v~~~L~~~---~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGG-GsviD~ 100 (377)
T cd08188 28 AKKVLLVSDPGVIK---AGWVDRVIESLEEA---GLEYVVFSDVSPNPRDEEVMAGAELYLENGCDVIIAVGG-GSPIDC 100 (377)
T ss_pred CCeEEEEeCcchhh---CccHHHHHHHHHHc---CCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHH
Confidence 36888887754311 12345566667643 22333321 111 223445555555678999999999 777777
Q ss_pred HhHh---HhCCccccc---cccccCCcceEEEeeC--cChhhhhh
Q 018199 122 VNGF---FSAGKLVTN---HNRESAHSTALGLIPL--GTGSDFAR 158 (359)
Q Consensus 122 lngl---~~~~~~~~~---~~~~~~~~~~lgiiP~--GTgN~~Ar 158 (359)
.-.+ +..+....+ ........+|+..||. |||--...
T Consensus 101 AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT~gTgSE~t~ 145 (377)
T cd08188 101 AKGIGIVASNGGHILDFEGVDKITRPLPPLICIPTTAGSGADVSQ 145 (377)
T ss_pred HHHHHHHHHCCCCHHHHhCcccccCCCCCEEEECCCCccccccCC
Confidence 6432 221100000 0001123478999997 66644444
No 154
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=44.27 E-value=49 Score=27.63 Aligned_cols=47 Identities=28% Similarity=0.439 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHcCCCEEEEEeCCchHHHHHhHhHhCCccccccccccCCcceEEEeeCcC
Q 018199 93 HAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGT 152 (359)
Q Consensus 93 ~a~~~~~~~~~~~~d~ivv~GGDGTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~GT 152 (359)
.|.++.+.+...++ .||.-|+.|-...+.++.++.+ ...+|++|.+-
T Consensus 19 ~A~~lg~~La~~g~-~lv~Gg~~GlM~a~a~ga~~~g------------g~viGVlp~~l 65 (159)
T TIGR00725 19 IAYRLGKELAKKGH-ILINGGRTGVMEAVSKGAREAG------------GLVVGILPDED 65 (159)
T ss_pred HHHHHHHHHHHCCC-EEEcCCchhHHHHHHHHHHHCC------------CeEEEECChhh
Confidence 45566677766665 4444556788888888876533 46799999753
No 155
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=44.06 E-value=1.3e+02 Score=25.19 Aligned_cols=31 Identities=13% Similarity=0.189 Sum_probs=20.4
Q ss_pred EecCCchHHHHHHHHHHH-cCCCEEEEEeCCc
Q 018199 86 SLTSGPSHAIDITREAIK-EGADAVIAVGGDG 116 (359)
Q Consensus 86 ~~t~~~~~a~~~~~~~~~-~~~d~ivv~GGDG 116 (359)
+..++.+...+..+++.. +++|.|+..||=|
T Consensus 43 iv~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg 74 (163)
T TIGR02667 43 IVKDDIYQIRAQVSAWIADPDVQVILITGGTG 74 (163)
T ss_pred EcCCCHHHHHHHHHHHHhcCCCCEEEECCCcC
Confidence 345555555555666543 5799999999944
No 156
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=44.02 E-value=2.2e+02 Score=24.86 Aligned_cols=46 Identities=11% Similarity=0.146 Sum_probs=27.7
Q ss_pred ccceEEEecCC-chHHHHHHHHHHHcCCCEEEEEeCCchHHHHHhHh
Q 018199 80 DCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGF 125 (359)
Q Consensus 80 ~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGTv~evlngl 125 (359)
++.+.+..+.+ +....+..+++...++|.|++..++..-.+.++.+
T Consensus 29 g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~ 75 (266)
T cd06282 29 GYSLLLATTDYDAEREADAVETLLRQRVDGLILTVADAATSPALDLL 75 (266)
T ss_pred CCEEEEeeCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCchHHHHHH
Confidence 34554444443 22333556666677899999988876434556555
No 157
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional
Probab=43.91 E-value=1.5e+02 Score=27.90 Aligned_cols=75 Identities=11% Similarity=0.089 Sum_probs=39.8
Q ss_pred CCCCCCCCCCcEEEEEcCCCCCCchhhhHHHHHHHHHhccc-cccceEEEecCC---chHHHHHHHHHHHcCCCEEEEEe
Q 018199 38 HGAASSSRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLS-VDCNICESLTSG---PSHAIDITREAIKEGADAVIAVG 113 (359)
Q Consensus 38 ~~~~~~~~~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~-~~~~~~~~~t~~---~~~a~~~~~~~~~~~~d~ivv~G 113 (359)
.|...+++.+++.+++ |... ...|..+...+.+... .++++.+..+.. ...-.+..+.+...++|.|+++.
T Consensus 38 ~Pn~~Ar~t~~Igvv~-p~~~----~~f~~~~~~gi~~aa~~~G~~l~i~~~~~~~~~~~q~~~i~~l~~~~vdgIIl~~ 112 (343)
T PRK10936 38 SPLLKAKKAWKLCALY-PHLK----DSYWLSVNYGMVEEAKRLGVDLKVLEAGGYYNLAKQQQQLEQCVAWGADAILLGA 112 (343)
T ss_pred ccccccCCCeEEEEEe-cCCC----chHHHHHHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHhCCCEEEEeC
Confidence 4555556677777776 4432 2234444443333221 234444443332 22233455666678899999998
Q ss_pred CCch
Q 018199 114 GDGT 117 (359)
Q Consensus 114 GDGT 117 (359)
.|..
T Consensus 113 ~~~~ 116 (343)
T PRK10936 113 VTPD 116 (343)
T ss_pred CChH
Confidence 7644
No 158
>PTZ00287 6-phosphofructokinase; Provisional
Probab=43.79 E-value=50 Score=37.22 Aligned_cols=63 Identities=14% Similarity=0.166 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHcCCCEEEEEeCCchHHHHHhHhHhCCccccccccccCCcceEEEeeCcChhhhhh-----hcCCC
Q 018199 93 HAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFAR-----TFGWR 163 (359)
Q Consensus 93 ~a~~~~~~~~~~~~d~ivv~GGDGTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~GTgN~~Ar-----~lg~~ 163 (359)
.....++.+..-+.|.+|++|||||+..+.- |.+.- .....++.+--+|.==-||+.. ++|+.
T Consensus 916 ~~~ka~~~lk~l~ID~LVvIGGDgS~t~A~~-LaE~f-------~~~gi~i~VIGVPkTIDNDL~~~~tD~TiGFD 983 (1419)
T PTZ00287 916 NRNKVCETVTNLQLNGLVMPGSNVTITEAAL-LAEYF-------LEKKIPTSVVGIPLTGSNNLIHELIETCVGFD 983 (1419)
T ss_pred HHHHHHHHHHHhCCCEEEEECCchHHHHHHH-HHHHH-------HhcCCCccEEEeCceeeCCCCCCCCcCCCCHH
Confidence 3344444455568999999999999976653 32100 0012334477888877899876 56664
No 159
>PRK00536 speE spermidine synthase; Provisional
Probab=43.15 E-value=15 Score=33.61 Aligned_cols=18 Identities=22% Similarity=0.279 Sum_probs=14.5
Q ss_pred CCEEEEEeCCc-hHHHHHh
Q 018199 106 ADAVIAVGGDG-TLHEVVN 123 (359)
Q Consensus 106 ~d~ivv~GGDG-Tv~evln 123 (359)
-.++|+-|||| |+.||+.
T Consensus 74 k~VLIiGGGDGg~~REvLk 92 (262)
T PRK00536 74 KEVLIVDGFDLELAHQLFK 92 (262)
T ss_pred CeEEEEcCCchHHHHHHHC
Confidence 45778889995 9999986
No 160
>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=42.97 E-value=1.8e+02 Score=27.78 Aligned_cols=84 Identities=18% Similarity=0.241 Sum_probs=46.0
Q ss_pred CcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEe----cCCchHHHHHHHHHHHcCC---CEEEEEeCCchHH
Q 018199 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESL----TSGPSHAIDITREAIKEGA---DAVIAVGGDGTLH 119 (359)
Q Consensus 47 ~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~----t~~~~~a~~~~~~~~~~~~---d~ivv~GGDGTv~ 119 (359)
+++++|..+.-. ....+++...|.. ..+.++. ..+-....+....+...++ |.||++|| |++-
T Consensus 20 ~r~lIVtD~~v~----~l~~~~l~~~L~~-----~~~~~~~~~e~~k~l~~v~~~~~~~~~~~~~r~d~iIaiGG-Gsv~ 89 (346)
T cd08196 20 ENDVFIVDANVA----ELYRDRLDLPLDA-----APVIAIDATEENKSLEAVSSVIESLRQNGARRNTHLVAIGG-GIIQ 89 (346)
T ss_pred CeEEEEECccHH----HHHHHHHHHHhcC-----CeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECC-hHHH
Confidence 788999987642 1123344444431 2222222 1122345555556666566 78888888 8888
Q ss_pred HHHhHhHhCCccccccccccCCcceEEEeeC
Q 018199 120 EVVNGFFSAGKLVTNHNRESAHSTALGLIPL 150 (359)
Q Consensus 120 evlngl~~~~~~~~~~~~~~~~~~~lgiiP~ 150 (359)
+++-.+... ....+|+-.+|.
T Consensus 90 D~ak~vA~~----------~~rgi~~i~iPT 110 (346)
T cd08196 90 DVTTFVASI----------YMRGVSWSFVPT 110 (346)
T ss_pred HHHHHHHHH----------HHcCCCeEEecc
Confidence 887665321 123456777765
No 161
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=42.62 E-value=2.5e+02 Score=25.07 Aligned_cols=47 Identities=11% Similarity=0.056 Sum_probs=27.2
Q ss_pred ccceEEEecCCchHHHHHHHHHHHcCCCEEEEEeCCchH-HHHHhHhH
Q 018199 80 DCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTL-HEVVNGFF 126 (359)
Q Consensus 80 ~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTv-~evlngl~ 126 (359)
++.+.+..+..+....+..+++...+.|.|++.+-|... -+.++.+.
T Consensus 29 g~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~~~~~~~~~~~~~~ 76 (289)
T cd01540 29 GFTVVKIDVPDGEKVLSAIDNLGAQGAKGFVICVPDVKLGPAIVAKAK 76 (289)
T ss_pred CCEEEEccCCCHHHHHHHHHHHHHcCCCEEEEccCchhhhHHHHHHHH
Confidence 344444334333333345556667789999999888533 34455553
No 162
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=42.30 E-value=49 Score=36.94 Aligned_cols=62 Identities=16% Similarity=0.197 Sum_probs=40.4
Q ss_pred HHHHHHHHHHcCCCEEEEEeCCchHHHHHhHhHhCCccccccccccCCcceEEEeeCcChhhhhh-----hcCCC
Q 018199 94 AIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFAR-----TFGWR 163 (359)
Q Consensus 94 a~~~~~~~~~~~~d~ivv~GGDGTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~GTgN~~Ar-----~lg~~ 163 (359)
.....+.+..-+.|.+|++|||||...+.. |.+.- .....++++--+|.==-||+.. ++|..
T Consensus 185 ~~~~le~lkkl~Id~LVvIGGDgS~t~A~~-LaEy~-------~~~g~~I~VIGIPKTIDNDL~g~~tD~S~GFd 251 (1328)
T PTZ00468 185 MRASLEICEKLKLHGLVVIGGDDSNTNAAV-LAEYF-------KRNSSSTVVVGCPKTIDGDLKNEVIETSFGYD 251 (1328)
T ss_pred HHHHHHHHHHhCCCEEEEECCchHHHHHHH-HHHHH-------HhcCCCeeEEEEeEEEcCCCCCCcCCCCCCHH
Confidence 333344444568999999999999976643 32100 0123568899999888899973 55654
No 163
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=42.19 E-value=2e+02 Score=25.68 Aligned_cols=72 Identities=17% Similarity=0.233 Sum_probs=36.8
Q ss_pred CCCCCcEEEEEcCCC------CCCchhhhHHHHHHHHHhccccccceEEEecCCchHHHHHHHHHHH---cCCCE-EEEE
Q 018199 43 SSRRRDLVFVVNPRG------ASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIK---EGADA-VIAV 112 (359)
Q Consensus 43 ~~~~~~~~iiiNP~S------G~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~---~~~d~-ivv~ 112 (359)
.+.++++.+|+|-.. ....+.+..+.+...|++. ++++.+..--...+..+.++++.. +++|. +++.
T Consensus 5 ~~~~~g~aLII~n~~f~~~~~~r~g~~~D~~~l~~~f~~l---gF~V~~~~nlt~~~~~~~l~~f~~~~~~~~d~~v~~~ 81 (243)
T cd00032 5 NSKRRGLALIINNENFDKGLKDRDGTDVDAENLTKLFESL---GYEVEVKNNLTAEEILEELKEFASPDHSDSDSFVCVI 81 (243)
T ss_pred CCCCCCEEEEEechhcCCCCCCCCChHHHHHHHHHHHHHC---CCEEEEeCCCCHHHHHHHHHHHHhccCCCCCeeEEEE
Confidence 445677777776532 1112233345566666653 355554444455566666666553 34554 3444
Q ss_pred eCCch
Q 018199 113 GGDGT 117 (359)
Q Consensus 113 GGDGT 117 (359)
=|-|.
T Consensus 82 ~sHG~ 86 (243)
T cd00032 82 LSHGE 86 (243)
T ss_pred CCCCC
Confidence 44553
No 164
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=42.11 E-value=2.4e+02 Score=24.81 Aligned_cols=62 Identities=16% Similarity=0.127 Sum_probs=34.0
Q ss_pred hHHHHHHHHHhcccc--ccceEEEecC-CchHHHHHHHHHHHcCCCEEEEEeCCch-HHHHHhHhH
Q 018199 65 EWKKLLPYLRSRLSV--DCNICESLTS-GPSHAIDITREAIKEGADAVIAVGGDGT-LHEVVNGFF 126 (359)
Q Consensus 65 ~~~~~~~~l~~~~~~--~~~~~~~~t~-~~~~a~~~~~~~~~~~~d~ivv~GGDGT-v~evlngl~ 126 (359)
.|.++...+.+.+.. ++.+.+..+. .+....+..+++...+.|.|++.+.|.. ..+++..+.
T Consensus 13 ~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~l~ 78 (272)
T cd06301 13 FLTLLRNAMKEHAKVLGGVELQFEDAKNDVATQLSQVENFIAQGVDAIIVVPVDTAATAPIVKAAN 78 (272)
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCchhhhHHHHHHHH
Confidence 344444444433222 3444433332 2333445566666778999999988854 345566554
No 165
>PRK08284 precorrin 6A synthase; Provisional
Probab=42.04 E-value=87 Score=28.42 Aligned_cols=60 Identities=15% Similarity=0.158 Sum_probs=39.6
Q ss_pred HHHHHHcCCCEEEEEeCCchHHHHHhHhHhCCccccccccccCCcceEEEeeC-cChhhhhhhcCCC
Q 018199 98 TREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPL-GTGSDFARTFGWR 163 (359)
Q Consensus 98 ~~~~~~~~~d~ivv~GGDGTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~-GTgN~~Ar~lg~~ 163 (359)
+.+...++-++++++.||-++......++..-. ......+++-++|+ -|.+..|..+|+|
T Consensus 96 i~~~l~~g~~Vv~l~~GDP~~ys~~~~l~~~l~------~~~~~~i~vevVPGISS~~aaaA~lg~p 156 (253)
T PRK08284 96 IAEELPDGGTGAFLVWGDPSLYDSTLRILERVR------ARGRVAFDYEVIPGITSVQALAARHRIP 156 (253)
T ss_pred HHHHHhCCCcEEEEeCCCcchhhHHHHHHHHHH------hhccCCCcEEEECChhHHHHHHHHcCCC
Confidence 344445677899999999988854444432110 00013578999998 6778888888887
No 166
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=41.51 E-value=2.5e+02 Score=24.76 Aligned_cols=31 Identities=13% Similarity=0.080 Sum_probs=21.5
Q ss_pred HHHHHHHHcCCCEEEEEeCCch-HHHHHhHhH
Q 018199 96 DITREAIKEGADAVIAVGGDGT-LHEVVNGFF 126 (359)
Q Consensus 96 ~~~~~~~~~~~d~ivv~GGDGT-v~evlngl~ 126 (359)
+..+.+...++|.|++.+.|.. ..+.+..+.
T Consensus 48 ~~i~~~~~~~~dgiIi~~~~~~~~~~~i~~~~ 79 (271)
T cd06321 48 SQIDNFIAAKVDLILLNAVDSKGIAPAVKRAQ 79 (271)
T ss_pred HHHHHHHHhCCCEEEEeCCChhHhHHHHHHHH
Confidence 4445566778999999988764 456666554
No 167
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=41.51 E-value=2.3e+02 Score=25.77 Aligned_cols=31 Identities=23% Similarity=0.177 Sum_probs=23.0
Q ss_pred HHHHHHHHcCCCEEEEEeCCch-HHHHHhHhH
Q 018199 96 DITREAIKEGADAVIAVGGDGT-LHEVVNGFF 126 (359)
Q Consensus 96 ~~~~~~~~~~~d~ivv~GGDGT-v~evlngl~ 126 (359)
+....+...++|.|+++..|.+ +..+++.+.
T Consensus 48 ~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~ 79 (303)
T cd01539 48 EQIDTALAKGVDLLAVNLVDPTAAQTVINKAK 79 (303)
T ss_pred HHHHHHHHcCCCEEEEecCchhhHHHHHHHHH
Confidence 4556677789999999988865 466777664
No 168
>PF05893 LuxC: Acyl-CoA reductase (LuxC); InterPro: IPR008670 This family consists of several bacterial Acyl-CoA reductase (LuxC) proteins. The channelling of fatty acids into the fatty aldehyde substrate for the bacterial bioluminescence reaction is catalysed by a fatty acid reductase multienzyme complex, which channels fatty acids through the thioesterase (LuxD), synthetase (LuxE) and reductase (LuxC) components [].; GO: 0003995 acyl-CoA dehydrogenase activity, 0008218 bioluminescence, 0055114 oxidation-reduction process
Probab=40.87 E-value=40 Score=32.86 Aligned_cols=44 Identities=27% Similarity=0.376 Sum_probs=30.0
Q ss_pred cCCCEEEEEeCCchHHHHHhHhHhCCccccccccccCCcceEEEeeCcC
Q 018199 104 EGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGT 152 (359)
Q Consensus 104 ~~~d~ivv~GGDGTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~GT 152 (359)
+.+|.+|+.|||-|+..+-.-+ ..+. .......+..+++|-.-.
T Consensus 167 ~~~D~vv~wGgd~ti~~ir~~~-~~~~----~~i~fg~k~S~avi~~~~ 210 (399)
T PF05893_consen 167 QQADAVVAWGGDETIRAIRQPL-PPGA----RLIEFGPKYSFAVIDAEA 210 (399)
T ss_pred HHCCEEEEeCCHHHHHHHHHHc-CCCC----cEeeeCCceEEEEEcCch
Confidence 5699999999999999999833 2111 112235677788876544
No 169
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=40.00 E-value=2e+02 Score=26.81 Aligned_cols=71 Identities=21% Similarity=0.327 Sum_probs=43.2
Q ss_pred CCCCCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEecC--CchHHHHHHHH---HHHc----CCCEEEEEe
Q 018199 43 SSRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTS--GPSHAIDITRE---AIKE----GADAVIAVG 113 (359)
Q Consensus 43 ~~~~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t~--~~~~a~~~~~~---~~~~----~~d~ivv~G 113 (359)
..-++++.||-.|.+ ..+..+...+..++. .+++.++.+. +.+-+.++++. +... .+|+||++=
T Consensus 11 P~~p~~I~vITs~~g------Aa~~D~~~~~~~r~~-~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~R 83 (319)
T PF02601_consen 11 PKFPKRIAVITSPTG------AAIQDFLRTLKRRNP-IVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIR 83 (319)
T ss_pred CCCCCEEEEEeCCch------HHHHHHHHHHHHhCC-CcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEec
Confidence 455889999998874 223455666666542 3555555544 33334444443 3222 489999998
Q ss_pred CCchHHH
Q 018199 114 GDGTLHE 120 (359)
Q Consensus 114 GDGTv~e 120 (359)
|=|.+-+
T Consensus 84 GGGs~eD 90 (319)
T PF02601_consen 84 GGGSIED 90 (319)
T ss_pred CCCChHH
Confidence 8888754
No 170
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=39.98 E-value=2.7e+02 Score=26.36 Aligned_cols=30 Identities=30% Similarity=0.434 Sum_probs=24.2
Q ss_pred cCCCEEEEEeCCchHHHHHhHhHhCCccccccccccCCcceEEEeeC
Q 018199 104 EGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPL 150 (359)
Q Consensus 104 ~~~d~ivv~GGDGTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~ 150 (359)
...|++|+-||=+|+.|++. ...|.-++|.
T Consensus 251 ~~adlvIsr~G~~t~~E~~~-----------------~g~P~I~iP~ 280 (352)
T PRK12446 251 AITDFVISRAGSNAIFEFLT-----------------LQKPMLLIPL 280 (352)
T ss_pred HhCCEEEECCChhHHHHHHH-----------------cCCCEEEEcC
Confidence 45789999999999999985 2467777775
No 171
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=39.59 E-value=1.9e+02 Score=25.81 Aligned_cols=98 Identities=16% Similarity=0.226 Sum_probs=53.8
Q ss_pred CcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEecCCchHHHHHHHHHHHc-CC-CEEEEEeCCchHHHHHhH
Q 018199 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKE-GA-DAVIAVGGDGTLHEVVNG 124 (359)
Q Consensus 47 ~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~-~~-d~ivv~GGDGTv~evlng 124 (359)
+++..++|++.|.|+.... --+...|.+. +..+.++.++...+..++.+..... .+ +.+.|.+.| ++. .+..
T Consensus 1 M~vItf~s~KGGaGKTT~~-~~LAs~la~~---G~~V~lIDaDpn~pl~~W~~~a~~~~~~~~~~~V~~~~-e~~-~l~~ 74 (231)
T PF07015_consen 1 MPVITFASSKGGAGKTTAA-MALASELAAR---GARVALIDADPNQPLAKWAENAQRPGAWPDRIEVYEAD-ELT-ILED 74 (231)
T ss_pred CCeEEEecCCCCCcHHHHH-HHHHHHHHHC---CCeEEEEeCCCCCcHHHHHHhccccCCCCCCeeEEecc-chh-hHHH
Confidence 4678899999988876432 1233334332 3467778888888888887665433 23 344444443 222 2222
Q ss_pred hHhCCccccccccccCCcceEEEeeC-cChhhhhhh
Q 018199 125 FFSAGKLVTNHNRESAHSTALGLIPL-GTGSDFART 159 (359)
Q Consensus 125 l~~~~~~~~~~~~~~~~~~~lgiiP~-GTgN~~Ar~ 159 (359)
.+... ......+.++=+ |++|-++..
T Consensus 75 ~~e~a---------~~~~~d~VlvDleG~as~~~~~ 101 (231)
T PF07015_consen 75 AYEAA---------EASGFDFVLVDLEGGASELNDY 101 (231)
T ss_pred HHHHH---------HhcCCCEEEEeCCCCCchhHHH
Confidence 22210 112345666666 776666543
No 172
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=38.90 E-value=3.3e+02 Score=25.38 Aligned_cols=77 Identities=25% Similarity=0.311 Sum_probs=47.2
Q ss_pred CCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceE--EEecCCchHHHHHHHHHHHcCCCEEEEEeCCchHHHHHh
Q 018199 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNIC--ESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVN 123 (359)
Q Consensus 46 ~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~--~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTv~evln 123 (359)
.+++.+++...+- ++ ...+.+...+++. ++++. ........+....++++...+.|.|++.+.....-.++.
T Consensus 138 ~~~v~ii~~~~~~-g~--~~~~~~~~~~~~~---G~~v~~~~~~~~~~~d~s~~i~~i~~~~~d~v~~~~~~~~~~~~~~ 211 (347)
T cd06335 138 FKKVALLLDNTGW-GR--SNRKDLTAALAAR---GLKPVAVEWFNWGDKDMTAQLLRAKAAGADAIIIVGNGPEGAQIAN 211 (347)
T ss_pred CCeEEEEeccCch-hh--hHHHHHHHHHHHc---CCeeEEEeeecCCCccHHHHHHHHHhCCCCEEEEEecChHHHHHHH
Confidence 5788888877542 22 2233444455543 23322 112223445667777777788999999988778888888
Q ss_pred HhHhC
Q 018199 124 GFFSA 128 (359)
Q Consensus 124 gl~~~ 128 (359)
.+.+.
T Consensus 212 ~~~~~ 216 (347)
T cd06335 212 GMAKL 216 (347)
T ss_pred HHHHc
Confidence 77543
No 173
>TIGR02434 CobF precorrin-6A synthase (deacetylating). This model identifies CobF in High GC gram positive, alphaproteobacteria and pseudomonas-related species.
Probab=38.03 E-value=1.1e+02 Score=27.68 Aligned_cols=59 Identities=12% Similarity=0.135 Sum_probs=40.0
Q ss_pred HHHHHHHHcCCCEEEEEeCCchHHH----HHhHhHhCCccccccccccCCcceEEEeeC-cChhhhhhhcCCCC
Q 018199 96 DITREAIKEGADAVIAVGGDGTLHE----VVNGFFSAGKLVTNHNRESAHSTALGLIPL-GTGSDFARTFGWRN 164 (359)
Q Consensus 96 ~~~~~~~~~~~d~ivv~GGDGTv~e----vlngl~~~~~~~~~~~~~~~~~~~lgiiP~-GTgN~~Ar~lg~~~ 164 (359)
+.+.+...++-+++++++||-++.. +++.+... ......+=++|. -|.+..|..+|+|.
T Consensus 93 ~~i~~~~~~g~~Vv~L~~GDP~~yst~~~l~~~l~~~----------~~~~~~vevVPGISS~~aaaA~lg~pl 156 (249)
T TIGR02434 93 QAIAEELGDDGTGAFLVWGDPSLYDSTLRILERLRAL----------GGVPFDYEVIPGITSVQALTARHRIPL 156 (249)
T ss_pred HHHHHHHhCCCcEEEEeCCCchHhhhHHHHHHHHHHh----------cCCCCCEEEECCHHHHHHHHHHhCCCc
Confidence 3444445567789999999998885 44444210 112467889998 56777888888874
No 174
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=37.30 E-value=67 Score=25.64 Aligned_cols=26 Identities=23% Similarity=0.456 Sum_probs=18.3
Q ss_pred cCCCEEEEEeCCchHHHHHhHhHhCC
Q 018199 104 EGADAVIAVGGDGTLHEVVNGFFSAG 129 (359)
Q Consensus 104 ~~~d~ivv~GGDGTv~evlngl~~~~ 129 (359)
..+|.++++.||+-+-.+++.|-+.+
T Consensus 94 ~~~d~ivLvSgD~Df~~~v~~l~~~g 119 (146)
T PF01936_consen 94 NPPDTIVLVSGDSDFAPLVRKLRERG 119 (146)
T ss_dssp GG-SEEEEE---GGGHHHHHHHHHH-
T ss_pred cCCCEEEEEECcHHHHHHHHHHHHcC
Confidence 45799999999999999999996543
No 175
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=37.27 E-value=52 Score=28.08 Aligned_cols=23 Identities=52% Similarity=0.608 Sum_probs=17.5
Q ss_pred cCCCEEEEE-eCCchHHHHHhHhH
Q 018199 104 EGADAVIAV-GGDGTLHEVVNGFF 126 (359)
Q Consensus 104 ~~~d~ivv~-GGDGTv~evlngl~ 126 (359)
+..|++|+. ||=||+.|+...+.
T Consensus 95 ~~sda~I~lPGG~GTL~El~e~~~ 118 (178)
T TIGR00730 95 ELADAFIAMPGGFGTLEELFEVLT 118 (178)
T ss_pred HhCCEEEEcCCCcchHHHHHHHHH
Confidence 345665555 99999999998874
No 176
>PRK15473 cbiF cobalt-precorrin-4 C(11)-methyltransferase; Provisional
Probab=37.09 E-value=1.3e+02 Score=27.08 Aligned_cols=63 Identities=17% Similarity=0.149 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHcCCCEEEEEeCCchHHHHHhHhHhCCccccccccccCCcceEEEeeCc-ChhhhhhhcCCCC
Q 018199 93 HAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLG-TGSDFARTFGWRN 164 (359)
Q Consensus 93 ~a~~~~~~~~~~~~d~ivv~GGDGTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~G-TgN~~Ar~lg~~~ 164 (359)
+..+.+.+...++-++++++.||-.+......+++.- ....+++=++|.= |.+..|..+|+|.
T Consensus 68 ~i~~~i~~~~~~g~~Vv~L~sGDP~~yg~~~~l~~~l---------~~~~i~veiiPGISS~~aaaA~lg~pl 131 (257)
T PRK15473 68 QIIDLMEAGVKAGKTVVRLQTGDVSLYGSIREQGEEL---------TKRGIDFQVVPGVSSFLGAAAELGVEY 131 (257)
T ss_pred HHHHHHHHHHHCCCeEEEEeCcCchhhhhHHHHHHHH---------HHCCCCEEEeCChhHHHHHHHHcCCCc
Confidence 3334445544566789999999976665554444311 1235788999985 4777777788774
No 177
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=36.89 E-value=56 Score=30.97 Aligned_cols=62 Identities=21% Similarity=0.317 Sum_probs=35.4
Q ss_pred CCcEEEEEcCCCCCCch--hhhHHHHHHHHHhccccccceEEEecCCchHHHHHHHHHHHcCCCEEEEE
Q 018199 46 RRDLVFVVNPRGASGRT--GKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAV 112 (359)
Q Consensus 46 ~~~~~iiiNP~SG~g~~--~~~~~~~~~~l~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~ 112 (359)
||=...=+||+||.+.. .+..+-+.|.+++.-..++++ .+|-.+..+-.+....+||+||+.
T Consensus 203 PrIaV~GLNPHAGE~G~~G~EE~~iI~PAI~~~~~~g~~v-----~GP~paDt~F~~~~~~~~D~vvaM 266 (332)
T PRK03743 203 PKIAVAGLNPHSGEHGLFGDEEVDEIIPAVEAAQEMGINV-----EGPVPADSVFHLALQGRYDAVLSL 266 (332)
T ss_pred CCEEEEeeCCCCCCCCCCcHHHHHHHHHHHHHHHHCCCcc-----cCCCCchhhcccccccCCCEEEEc
Confidence 44445558999987533 233444678777653333332 244444444444455679999964
No 178
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=36.15 E-value=2.9e+02 Score=24.22 Aligned_cols=76 Identities=12% Similarity=0.128 Sum_probs=42.2
Q ss_pred CCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEE--EecCCchHHHHHHHHHHHcCCCEEEEEeCCchHHHHHh
Q 018199 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICE--SLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVN 123 (359)
Q Consensus 46 ~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~--~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTv~evln 123 (359)
.+++.++..... .+ ....+.+...+++. +.++.. .......+....+.++...+.|.|++++.......++.
T Consensus 135 ~~~i~~v~~~~~-~~--~~~~~~~~~~~~~~---g~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~ 208 (298)
T cd06268 135 VKKVAIIYDDYA-YG--RGLAAAFREALKKL---GGEVVAEETYPPGATDFSPLIAKLKAAGPDAVFLAGYGGDAALFLK 208 (298)
T ss_pred CCEEEEEEcCCc-hh--HHHHHHHHHHHHHc---CCEEEEEeccCCCCccHHHHHHHHHhcCCCEEEEccccchHHHHHH
Confidence 578888876543 22 22233344455543 122221 11222245666666766667888888766566677887
Q ss_pred HhHh
Q 018199 124 GFFS 127 (359)
Q Consensus 124 gl~~ 127 (359)
.+.+
T Consensus 209 ~~~~ 212 (298)
T cd06268 209 QARE 212 (298)
T ss_pred HHHH
Confidence 7754
No 179
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=35.94 E-value=34 Score=27.55 Aligned_cols=39 Identities=28% Similarity=0.405 Sum_probs=23.2
Q ss_pred CCCEEEEE-eCCchHHHHHhHhHhCCccccccccccCCcceEEEeeC
Q 018199 105 GADAVIAV-GGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPL 150 (359)
Q Consensus 105 ~~d~ivv~-GGDGTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~ 150 (359)
..|++|+. ||=||+.|+...+.... .....+.|+.++-.
T Consensus 53 ~sda~I~lPGG~GTl~El~~~~~~~~-------l~~~~~~Piil~~~ 92 (133)
T PF03641_consen 53 SSDAFIALPGGIGTLDELFEALTLMQ-------LGRHNKVPIILLNI 92 (133)
T ss_dssp HESEEEEES-SHHHHHHHHHHHHHHH-------TTSSTS-EEEEEEC
T ss_pred hCCEEEEEecCCchHHHHHHHHHHHh-------hccccCCCEEEeCC
Confidence 35665555 89999999998874211 01124458888763
No 180
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=35.62 E-value=3.6e+02 Score=24.86 Aligned_cols=76 Identities=12% Similarity=0.103 Sum_probs=39.5
Q ss_pred CCCcEEEEEcCCCCCCchhhhHHHHHHHHHhccc-cccceEEEecCC-chHHHHHHHHHHHcCCCEEEEEeCCchHHHHH
Q 018199 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLS-VDCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGTLHEVV 122 (359)
Q Consensus 45 ~~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~-~~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGTv~evl 122 (359)
+.+.+.+++ |... ...|..+...+.+.+. .++.+.+..+.. +....+..+.+...++|.|++.+.+......+
T Consensus 63 ~~~~Igvv~-~~~~----~~~~~~i~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~ 137 (342)
T PRK10014 63 QSGVIGLIV-RDLS----APFYAELTAGLTEALEAQGRMVFLLQGGKDGEQLAQRFSTLLNQGVDGVVIAGAAGSSDDLR 137 (342)
T ss_pred CCCEEEEEe-CCCc----cchHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCCcHHHH
Confidence 345677776 3321 1234444433333221 234443333432 22334555666677899999998876545556
Q ss_pred hHh
Q 018199 123 NGF 125 (359)
Q Consensus 123 ngl 125 (359)
+.+
T Consensus 138 ~~l 140 (342)
T PRK10014 138 EMA 140 (342)
T ss_pred HHH
Confidence 555
No 181
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=35.19 E-value=97 Score=24.78 Aligned_cols=38 Identities=24% Similarity=0.332 Sum_probs=23.3
Q ss_pred ecCCchHHHHHHHHHHHcCCCEEEEEeCCc-----hHHHHHhHh
Q 018199 87 LTSGPSHAIDITREAIKEGADAVIAVGGDG-----TLHEVVNGF 125 (359)
Q Consensus 87 ~t~~~~~a~~~~~~~~~~~~d~ivv~GGDG-----Tv~evlngl 125 (359)
..+.++...+..+++.. ++|.|+..||=| -..+++..+
T Consensus 41 v~Dd~~~i~~~i~~~~~-~~DlvittGG~g~g~~D~t~~ai~~~ 83 (133)
T cd00758 41 VPDDADSIRAALIEASR-EADLVLTTGGTGVGRRDVTPEALAEL 83 (133)
T ss_pred cCCCHHHHHHHHHHHHh-cCCEEEECCCCCCCCCcchHHHHHHh
Confidence 34455555555555544 499999999966 234555444
No 182
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=34.92 E-value=3.3e+02 Score=26.07 Aligned_cols=84 Identities=20% Similarity=0.277 Sum_probs=49.4
Q ss_pred CcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEecCCchHHHHHHHHHH-----------------HcCCCEE
Q 018199 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAI-----------------KEGADAV 109 (359)
Q Consensus 47 ~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t~~~~~a~~~~~~~~-----------------~~~~d~i 109 (359)
++.++|+ |+..+.+.++++++.+...+.. .+.++...+.++..+...... -...|+|
T Consensus 183 ~~~ilV~----GGS~Ga~~ln~~v~~~~~~l~~--~~~v~~~~G~~~~~~~~~~~~~~~~~~v~~f~~dm~~~~~~ADLv 256 (357)
T COG0707 183 KKTILVT----GGSQGAKALNDLVPEALAKLAN--RIQVIHQTGKNDLEELKSAYNELGVVRVLPFIDDMAALLAAADLV 256 (357)
T ss_pred CcEEEEE----CCcchhHHHHHHHHHHHHHhhh--CeEEEEEcCcchHHHHHHHHhhcCcEEEeeHHhhHHHHHHhccEE
Confidence 4444444 5555566677766655544432 233333344444332222211 1357899
Q ss_pred EEEeCCchHHHHHhHhHhCCccccccccccCCcceEEEeeCcCh
Q 018199 110 IAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTG 153 (359)
Q Consensus 110 vv~GGDGTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~GTg 153 (359)
|+=.|=.|+.|++- ...|.-++|...+
T Consensus 257 IsRaGa~Ti~E~~a-----------------~g~P~IliP~p~~ 283 (357)
T COG0707 257 ISRAGALTIAELLA-----------------LGVPAILVPYPPG 283 (357)
T ss_pred EeCCcccHHHHHHH-----------------hCCCEEEeCCCCC
Confidence 99999999999985 2478888888765
No 183
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=34.90 E-value=3.3e+02 Score=24.29 Aligned_cols=31 Identities=19% Similarity=0.179 Sum_probs=20.7
Q ss_pred HHHHHHHHHcCCCEEEEEeCCch-HHHHHhHh
Q 018199 95 IDITREAIKEGADAVIAVGGDGT-LHEVVNGF 125 (359)
Q Consensus 95 ~~~~~~~~~~~~d~ivv~GGDGT-v~evlngl 125 (359)
.+..+.+...++|.|++.+.|.. ..+.+..+
T Consensus 46 ~~~i~~l~~~~vdgiil~~~~~~~~~~~~~~~ 77 (280)
T cd06315 46 AAALNQAIALKPDGIVLGGVDAAELQAELELA 77 (280)
T ss_pred HHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHH
Confidence 45666677789999999988743 23344444
No 184
>COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only]
Probab=34.83 E-value=56 Score=29.05 Aligned_cols=56 Identities=23% Similarity=0.404 Sum_probs=37.1
Q ss_pred HHHHHcCCC-EEEEEeCCchHHHHHhHhHhCCccccccccccCCcceEEEeeCcChhhhhhhcCCCCCHHHHHHHHHc
Q 018199 99 REAIKEGAD-AVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTFGWRNDPYEAVERIAK 175 (359)
Q Consensus 99 ~~~~~~~~d-~ivv~GGDGTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~GTgN~~Ar~lg~~~~~~~al~~i~~ 175 (359)
++...++.+ .||++|-||++-.|+.+|. ++|+--+|.-+| +|....-..++...++
T Consensus 166 ~r~~~~~~~~lIVvAGMEGaLPsvvagLv---------------D~PVIavPTsVG------YG~g~gGiaaLltMLq 222 (254)
T COG1691 166 KRLKIEDADVLIVVAGMEGALPSVVAGLV---------------DVPVIAVPTSVG------YGAGGGGIAALLTMLQ 222 (254)
T ss_pred HHHHhhCCCeEEEEcccccchHHHHHhcc---------------CCCeEecccccc------cCcCCccHHHHHHHHH
Confidence 333445555 5677799999999999996 477777887654 4444333455555554
No 185
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=34.43 E-value=64 Score=28.70 Aligned_cols=55 Identities=24% Similarity=0.360 Sum_probs=37.2
Q ss_pred HHHHHHHHHHcCCCEEEEEeCCchHHHHHhHhHhCCccccccccccCCcceEEEeeCcChhhhhh
Q 018199 94 AIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFAR 158 (359)
Q Consensus 94 a~~~~~~~~~~~~d~ivv~GGDGTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~GTgN~~Ar 158 (359)
..+.++++...+.|+|++-|-||.-.+-+..++.+- ....+|+.+.| |+.+.+..
T Consensus 16 ~~~~~~~~~~~gtdai~vGGS~~vt~~~~~~~v~~i---------k~~~lPvilfp-~~~~~i~~ 70 (223)
T TIGR01768 16 ADEIAKAAAESGTDAILIGGSQGVTYEKTDTLIEAL---------RRYGLPIILFP-SNPTNVSR 70 (223)
T ss_pred cHHHHHHHHhcCCCEEEEcCCCcccHHHHHHHHHHH---------hccCCCEEEeC-CCccccCc
Confidence 445677777889999999999987655555554322 13459999999 44444433
No 186
>PLN00180 NDF6 (NDH-dependent flow 6); Provisional
Probab=34.35 E-value=8.9 Score=31.52 Aligned_cols=15 Identities=47% Similarity=0.481 Sum_probs=11.2
Q ss_pred EEEEeCCchHHHHHh
Q 018199 109 VIAVGGDGTLHEVVN 123 (359)
Q Consensus 109 ivv~GGDGTv~evln 123 (359)
-=-.|||||.|.+-.
T Consensus 128 YRgdGGDGT~hW~Yd 142 (180)
T PLN00180 128 YRGDGGDGTGHWVYE 142 (180)
T ss_pred hcccCCCCceeeEee
Confidence 345699999997654
No 187
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=34.02 E-value=1.1e+02 Score=31.43 Aligned_cols=59 Identities=17% Similarity=0.144 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHcCCCEEEEEeCCchHHHHHhHhHhCCccccccccccCCcceEEEeeCcChhhhhhh
Q 018199 93 HAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFART 159 (359)
Q Consensus 93 ~a~~~~~~~~~~~~d~ivv~GGDGTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~GTgN~~Ar~ 159 (359)
+.....+.+..-+.|.+|++|||||...+.. |.+.- .....++++--+|.==-||+.-.
T Consensus 178 ~~~~~~~~l~~l~Id~LViIGGddS~~~A~~-Lae~~-------~~~g~~i~VIGVPKTIDNDL~~t 236 (568)
T PLN02251 178 QFKQAEETATKLDLDGLVVIGGDDSNTNACL-LAEYF-------RAKNLKTRVIGCPKTIDGDLKSK 236 (568)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCchHHHHHHH-HHHHH-------HhcCCCeeEEEeCceEeCCCCCC
Confidence 4444455555668999999999999876653 22100 01234588888888667888653
No 188
>PRK05637 anthranilate synthase component II; Provisional
Probab=33.89 E-value=3.2e+02 Score=23.82 Aligned_cols=60 Identities=13% Similarity=0.114 Sum_probs=34.8
Q ss_pred CCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEecCCchHHHHHHHHHHHcCCCEEEEEeCCchHHHH
Q 018199 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEV 121 (359)
Q Consensus 46 ~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTv~ev 121 (359)
++++++|=|=-| ....+...|++. +...++...+.+ .. ++....+|.||+.||-|.+.+.
T Consensus 1 ~~~il~iD~~ds-------f~~nl~~~l~~~---g~~~~v~~~~~~--~~----~l~~~~~~~iIlsgGPg~~~d~ 60 (208)
T PRK05637 1 MTHVVLIDNHDS-------FVYNLVDAFAVA---GYKCTVFRNTVP--VE----EILAANPDLICLSPGPGHPRDA 60 (208)
T ss_pred CCEEEEEECCcC-------HHHHHHHHHHHC---CCcEEEEeCCCC--HH----HHHhcCCCEEEEeCCCCCHHHh
Confidence 467777776332 112356667653 233333333211 22 2224578999999999999886
No 189
>COG0337 AroB 3-dehydroquinate synthetase [Amino acid transport and metabolism]
Probab=33.88 E-value=2.7e+02 Score=26.68 Aligned_cols=89 Identities=17% Similarity=0.130 Sum_probs=48.0
Q ss_pred CCCCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceE--EEe----cCCchHHHHHHHHHHHc---CCCEEEEEeC
Q 018199 44 SRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNIC--ESL----TSGPSHAIDITREAIKE---GADAVIAVGG 114 (359)
Q Consensus 44 ~~~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~--~~~----t~~~~~a~~~~~~~~~~---~~d~ivv~GG 114 (359)
...+++.||.|+.=. .-..+++...|.+.. +.+. +.. +++-....++...+... +-+.||+.||
T Consensus 31 ~~~~k~~ivtd~~v~----~~y~~~~~~~l~~~g---~~v~~~~lp~GE~~Ksl~~~~~i~~~ll~~~~~R~s~iialGG 103 (360)
T COG0337 31 LAGRKVAIVTDETVA----PLYLEKLLATLEAAG---VEVDSIVLPDGEEYKSLETLEKIYDALLEAGLDRKSTLIALGG 103 (360)
T ss_pred ccCCeEEEEECchhH----HHHHHHHHHHHHhcC---CeeeEEEeCCCcccccHHHHHHHHHHHHHcCCCCCcEEEEECC
Confidence 344599999999742 223456666676642 2221 111 22222333344444443 4467888887
Q ss_pred CchHHHHHhHhHhCCccccccccccCCcceEEEeeC
Q 018199 115 DGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPL 150 (359)
Q Consensus 115 DGTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~ 150 (359)
|++-+++.=..... ...+++--+|.
T Consensus 104 -GvigDlaGF~Aaty----------~RGv~fiqiPT 128 (360)
T COG0337 104 -GVIGDLAGFAAATY----------MRGVRFIQIPT 128 (360)
T ss_pred -hHHHHHHHHHHHHH----------HcCCCeEeccc
Confidence 88888874333221 23567777775
No 190
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=33.81 E-value=3.9e+02 Score=24.78 Aligned_cols=80 Identities=8% Similarity=-0.012 Sum_probs=42.0
Q ss_pred CCCCCCcEEEEEcCCCCCCchhhhHHHHHHHHHhcccc-c-cceEEEecCC-chHHHHHHHHHHHcCCCEEEEEeCCch-
Q 018199 42 SSSRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSV-D-CNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGT- 117 (359)
Q Consensus 42 ~~~~~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~-~-~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGT- 117 (359)
.+...+.+.++++-.+ ...+.++...+.+.... + +.+....+.. .....+..+.+...++|.|++++.|..
T Consensus 20 ~~~~~~~Igvv~~~~~-----~~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~ 94 (330)
T PRK15395 20 AAAADTRIGVTIYKYD-----DNFMSVVRKAIEKDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAA 94 (330)
T ss_pred hhcCCceEEEEEecCc-----chHHHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeccCHHH
Confidence 4556677888875322 12334444333333222 1 2332222322 222334555666778999999988875
Q ss_pred HHHHHhHhH
Q 018199 118 LHEVVNGFF 126 (359)
Q Consensus 118 v~evlngl~ 126 (359)
..++++.+.
T Consensus 95 ~~~~l~~l~ 103 (330)
T PRK15395 95 APTVIEKAR 103 (330)
T ss_pred HHHHHHHHH
Confidence 455666554
No 191
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=33.67 E-value=1.3e+02 Score=26.73 Aligned_cols=52 Identities=25% Similarity=0.318 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHcCCCEEEEEeCCch---HHHHHhHhHhCCccccccccccCCcceEEEeeCcChhh
Q 018199 93 HAIDITREAIKEGADAVIAVGGDGT---LHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSD 155 (359)
Q Consensus 93 ~a~~~~~~~~~~~~d~ivv~GGDGT---v~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~GTgN~ 155 (359)
...++++.+...+.|+|++.|-||. +.+++..+-+. ...+|+.+.|....+.
T Consensus 13 ~~~~~~~~~~~~gtdai~vGGS~~v~~~~~~~~~~ik~~-----------~~~~Pvilfp~~~~~i 67 (219)
T cd02812 13 VDEEIAKLAEESGTDAIMVGGSDGVSSTLDNVVRLIKRI-----------RRPVPVILFPSNPEAV 67 (219)
T ss_pred CHHHHHHHHHhcCCCEEEECCccchhhhHHHHHHHHHHh-----------cCCCCEEEeCCCcccc
Confidence 3444555555578999999999975 66677655321 1149999999877554
No 192
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=33.64 E-value=2.1e+02 Score=26.15 Aligned_cols=77 Identities=9% Similarity=0.091 Sum_probs=40.0
Q ss_pred CCCCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEecCCchHHHHHHHHHHHcCCCEEEEEeCCchHHHHHh
Q 018199 44 SRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVN 123 (359)
Q Consensus 44 ~~~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTv~evln 123 (359)
+..+++.+++||... .+....+.+.....+. ++++..+......+.....+.+ .++.|++++ ..|.++..-..
T Consensus 129 P~~k~igvl~~~~~~--~~~~~~~~~~~~a~~~---g~~l~~~~v~~~~~~~~~~~~l-~~~~da~~~-~~~~~~~~~~~ 201 (294)
T PF04392_consen 129 PDAKRIGVLYDPSEP--NSVAQIEQLRKAAKKL---GIELVEIPVPSSEDLEQALEAL-AEKVDALYL-LPDNLVDSNFE 201 (294)
T ss_dssp TT--EEEEEEETT-H--HHHHHHHHHHHHHHHT---T-EEEEEEESSGGGHHHHHHHH-CTT-SEEEE--S-HHHHHTHH
T ss_pred CCCCEEEEEecCCCc--cHHHHHHHHHHHHHHc---CCEEEEEecCcHhHHHHHHHHh-hccCCEEEE-ECCcchHhHHH
Confidence 457899999999742 1122233343333332 3444444555566666665554 456786655 67888877665
Q ss_pred HhHh
Q 018199 124 GFFS 127 (359)
Q Consensus 124 gl~~ 127 (359)
.+..
T Consensus 202 ~i~~ 205 (294)
T PF04392_consen 202 AILQ 205 (294)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 193
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=33.29 E-value=3.3e+02 Score=23.72 Aligned_cols=45 Identities=16% Similarity=0.074 Sum_probs=27.4
Q ss_pred ccceEEEecCCchHHHHHHHHHHHcCCCEEEEEeCCchHHHHHhHh
Q 018199 80 DCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGF 125 (359)
Q Consensus 80 ~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTv~evlngl 125 (359)
++.+....+....+..+..+++...+.|.|++...|-+- ..+..+
T Consensus 29 g~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~-~~~~~~ 73 (266)
T cd06278 29 GYQPLLINTDDDEDLDAALRQLLQYRVDGVIVTSGTLSS-ELAEEC 73 (266)
T ss_pred CCeEEEEcCCCCHHHHHHHHHHHHcCCCEEEEecCCCCH-HHHHHH
Confidence 344444444433345556667777889999999887654 345544
No 194
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=32.94 E-value=3.4e+02 Score=23.85 Aligned_cols=61 Identities=13% Similarity=0.214 Sum_probs=32.3
Q ss_pred hHHHHHHHHHhccc-cccceEEEecCCc-hHHHHHHHHHHHcCCCEEEEEeCCch-HHHHHhHh
Q 018199 65 EWKKLLPYLRSRLS-VDCNICESLTSGP-SHAIDITREAIKEGADAVIAVGGDGT-LHEVVNGF 125 (359)
Q Consensus 65 ~~~~~~~~l~~~~~-~~~~~~~~~t~~~-~~a~~~~~~~~~~~~d~ivv~GGDGT-v~evlngl 125 (359)
.|.++...+.+... .++++.+..+... ....+..+++...++|.||+.+.|.. ..+.+..+
T Consensus 13 ~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~~~~~~~~~l~~~ 76 (277)
T cd06319 13 FWQIMGRGVKSKAKALGYDAVELSAENSAKKELENLRTAIDKGVSGIIISPTNSSAAVTLLKLA 76 (277)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcCCchhhhHHHHHHH
Confidence 34444444433322 2345544444322 22334455666778999998887754 34556544
No 195
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional
Probab=32.71 E-value=68 Score=30.30 Aligned_cols=63 Identities=21% Similarity=0.264 Sum_probs=35.9
Q ss_pred CCCcEEEEEcCCCCCCch--hhhHHHHHHHHHhccccccceEEEecCCchHHHHHHHHHHHcCCCEEEEE
Q 018199 45 RRRDLVFVVNPRGASGRT--GKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAV 112 (359)
Q Consensus 45 ~~~~~~iiiNP~SG~g~~--~~~~~~~~~~l~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~ 112 (359)
+||=...=+||++|.+.. .+..+-+.|.+++.-..++++ .+|-.+..+-.+....+||.||+.
T Consensus 201 ~PrIaV~gLNPHAGE~G~~G~EE~~iI~PAi~~~~~~G~~v-----~GP~paDt~F~~~~~~~~D~vvaM 265 (326)
T PRK03371 201 KPRIAVAGVNPHAGENGLFGDEEIRIVTPAIEAMRAKGMDV-----YGPCPPDTVFLQAYEGQYDMVVAM 265 (326)
T ss_pred CCCEEEEeeCCCCCCCCCCcHHHHHHHHHHHHHHHHCCCcc-----cCCCCchhhcccccccCCCEEEEc
Confidence 344445558999987533 233445678877653333332 234334444444445679999964
No 196
>PF12219 End_tail_spike: Catalytic domain of bacteriophage endosialidase; InterPro: IPR024430 This entry represents the C-terminal domain of endosialidases which is approximately 160 amino acids in length. There are two conserved sequence motifs: VSR and YGA. The endosialidase protein forms homotrimeric molecules and this domain complexes into a tail-spike stalk. The stalk region folds in a triple beta-helix that is interrupted by a small triple beta-prism domain. The tail-spike is a multifunctional protein device used by the phage to fulfil the following functions: (i) to adsorb to the bacterial polySia capsule (ii) to de-polymerise the capsule to gain access to the outer bacterial membrane, and finally (iii) to mediate tight adhesion to the membrane, a prerequisite for the initiation of the infection cycle [].; PDB: 3JU4_A 3GW6_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=32.47 E-value=28 Score=28.09 Aligned_cols=14 Identities=36% Similarity=0.677 Sum_probs=11.0
Q ss_pred CCEEEEEeCCchHH
Q 018199 106 ADAVIAVGGDGTLH 119 (359)
Q Consensus 106 ~d~ivv~GGDGTv~ 119 (359)
...+|++|||||-+
T Consensus 85 gQRlIvsGGegtss 98 (160)
T PF12219_consen 85 GQRLIVSGGEGTSS 98 (160)
T ss_dssp G-EEEEESSSSSSG
T ss_pred ccEEEEeCCCCccc
Confidence 35799999999954
No 197
>PF12138 Spherulin4: Spherulation-specific family 4; InterPro: IPR021986 This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 250 and 398 amino acids in length. There is a conserved NPG sequence motif and there are two completely conserved G residues that may be functionally important. Starvation will often induce spherulation - the production of spores - and this process may involve DNA-methylation. Changes in the methylation of spherulin4 are associated with the formation of spherules, but these changes are probably transient. Methylation of the gene accompanies its transcriptional activation, and spherulin4 mRNA is only detectable in late spherulating cultures and mature spherules. It is a spherulation-specific protein.
Probab=32.07 E-value=93 Score=28.22 Aligned_cols=33 Identities=15% Similarity=0.426 Sum_probs=23.1
Q ss_pred CCCCCCcEEEEEcCCCCCCch-----hhhHHHHHHHHH
Q 018199 42 SSSRRRDLVFVVNPRGASGRT-----GKEWKKLLPYLR 74 (359)
Q Consensus 42 ~~~~~~~~~iiiNP~SG~g~~-----~~~~~~~~~~l~ 74 (359)
.+.+...+.+|+||.+|-|.+ ...+...++.|.
T Consensus 26 ~~~p~~~f~vIiNP~sGPG~~~~~~pd~~Y~~~i~~L~ 63 (253)
T PF12138_consen 26 AAHPSVPFTVIINPNSGPGSAPDPWPDANYAAAIPRLN 63 (253)
T ss_pred hcCCCCcEEEEEcCCCCCCCCCCCCCCHHHHHHHHHHH
Confidence 445566799999999999954 234555556664
No 198
>PRK05568 flavodoxin; Provisional
Probab=31.68 E-value=2.2e+02 Score=22.67 Aligned_cols=68 Identities=15% Similarity=0.121 Sum_probs=37.7
Q ss_pred CCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEecCCchHHHHHHHHHHHcCCCEEEEEe----C----Cch
Q 018199 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVG----G----DGT 117 (359)
Q Consensus 46 ~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~G----G----DGT 117 (359)
|++++|++-. +.|...+..+.+...+.+. +.+++++...... .. ...++|.|+.+. + ++.
T Consensus 1 m~~~~IvY~S--~~GnT~~~a~~i~~~~~~~---g~~v~~~~~~~~~-~~------~~~~~d~iilgsp~y~~~~~~~~~ 68 (142)
T PRK05568 1 MKKINIIYWS--GTGNTEAMANLIAEGAKEN---GAEVKLLNVSEAS-VD------DVKGADVVALGSPAMGDEVLEEGE 68 (142)
T ss_pred CCeEEEEEEC--CCchHHHHHHHHHHHHHHC---CCeEEEEECCCCC-HH------HHHhCCEEEEECCccCcccccchh
Confidence 4678899965 4566667777776666543 2334433322211 11 124688777663 2 245
Q ss_pred HHHHHhHh
Q 018199 118 LHEVVNGF 125 (359)
Q Consensus 118 v~evlngl 125 (359)
+...++.+
T Consensus 69 ~~~f~~~~ 76 (142)
T PRK05568 69 MEPFVESI 76 (142)
T ss_pred HHHHHHHh
Confidence 66676665
No 199
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed
Probab=31.65 E-value=80 Score=29.93 Aligned_cols=63 Identities=29% Similarity=0.340 Sum_probs=35.8
Q ss_pred CCCcEEEEEcCCCCCCch--hhhHHHHHHHHHhccccccceEEEecCCchHHHHHHHHHHHcCCCEEEEE
Q 018199 45 RRRDLVFVVNPRGASGRT--GKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAV 112 (359)
Q Consensus 45 ~~~~~~iiiNP~SG~g~~--~~~~~~~~~~l~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~ 112 (359)
.||=...=+||++|.+.. .+..+-+.|.+++....++++ .+|-.+..+-.+....+||+||+.
T Consensus 202 ~PrIaV~gLNPHAGE~G~~G~EE~~iI~PAI~~~~~~G~~v-----~GP~paDt~F~~~~~~~~D~vvaM 266 (332)
T PRK00232 202 EPRIAVCGLNPHAGEGGHFGREEIDIIIPALEELRAEGINL-----VGPLPADTLFQPAYLGDADAVLAM 266 (332)
T ss_pred CCcEEEEeeCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCc-----CCCCCchhhccccccCCCCEEEEC
Confidence 344445558999986433 223344678777654333332 244444444444455789999964
No 200
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=31.55 E-value=3.6e+02 Score=23.72 Aligned_cols=65 Identities=12% Similarity=0.066 Sum_probs=33.4
Q ss_pred cEEEEEcCCCCCCchhhhHHHHHHHHHhccc-cccceEEEecCCchHHHHHHHHHHHcCCCEEEEEeCC
Q 018199 48 DLVFVVNPRGASGRTGKEWKKLLPYLRSRLS-VDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGD 115 (359)
Q Consensus 48 ~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~-~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGD 115 (359)
|+.+|++. . . -....|..+...+.+.+. .++++.+..+..+....+..+.+...++|.|++++.+
T Consensus 1 ~Igvi~~~-~-~-~~~~f~~~l~~gi~~~~~~~gy~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~ 66 (260)
T cd06304 1 KVALVYDG-G-G-GDKSFNQSAYEGLEKAEKELGVEVKYVESVEDADYEPNLRQLAAQGYDLIFGVGFG 66 (260)
T ss_pred CEEEEecC-C-C-CcchHHHHHHHHHHHHHHhcCceEEEEecCCHHHHHHHHHHHHHcCCCEEEECCcc
Confidence 46666642 1 0 012334444444433322 2344443334334444456666667789999998766
No 201
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=31.54 E-value=1.7e+02 Score=24.59 Aligned_cols=47 Identities=23% Similarity=0.188 Sum_probs=32.6
Q ss_pred HcCCCEEEEEeCCchHHHHHhHhHhCCccccccccccCCcceEEEeeCcChhhhhhhc
Q 018199 103 KEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFARTF 160 (359)
Q Consensus 103 ~~~~d~ivv~GGDGTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~GTgN~~Ar~l 160 (359)
....|.++.+.|||=...+++.|-+.++ .+..--.+..|...|-++.
T Consensus 103 ~~~iD~~vLvSgD~DF~~Lv~~lre~G~-----------~V~v~g~~~~ts~~L~~ac 149 (160)
T TIGR00288 103 NPNIDAVALVTRDADFLPVINKAKENGK-----------ETIVIGAEPGFSTALQNSA 149 (160)
T ss_pred cCCCCEEEEEeccHhHHHHHHHHHHCCC-----------EEEEEeCCCCChHHHHHhc
Confidence 3678999999999999999999976542 2222223556766665543
No 202
>PRK12419 riboflavin synthase subunit beta; Provisional
Probab=31.31 E-value=3.1e+02 Score=22.93 Aligned_cols=98 Identities=9% Similarity=0.056 Sum_probs=51.4
Q ss_pred CCCCCcEEEEEcCCCCCCchhhhHHHH----HHHHHhccccccceEEEecCCchHHHHHHHHHHH-cCCCEEEEEe----
Q 018199 43 SSRRRDLVFVVNPRGASGRTGKEWKKL----LPYLRSRLSVDCNICESLTSGPSHAIDITREAIK-EGADAVIAVG---- 113 (359)
Q Consensus 43 ~~~~~~~~iiiNP~SG~g~~~~~~~~~----~~~l~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~-~~~d~ivv~G---- 113 (359)
.....|+.|++--. . ..+.+++ ...|.+.....-++.++...+.-+.--.++++.. .+||.||+.|
T Consensus 7 ~~~~~riaIV~srf----n-~~It~~Ll~gA~~~l~~~G~~~~~i~v~~VPGA~EiP~~a~~l~~~~~yDaiIaLG~VIr 81 (158)
T PRK12419 7 FATPQRIAFIQARW----H-ADIVDQARKGFVAEIAARGGAASQVDIFDVPGAFEIPLHAQTLAKTGRYAAIVAAALVVD 81 (158)
T ss_pred CCCCCEEEEEEecC----C-HHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEEEEEEc
Confidence 33456888887433 1 2222333 3344443211123444555555555555666554 4699999987
Q ss_pred CCch-----HHHHHhHhHhCCccccccccccCCcceEEEeeCcC
Q 018199 114 GDGT-----LHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGT 152 (359)
Q Consensus 114 GDGT-----v~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~GT 152 (359)
|+-. -+++.+||++-. ......+-+|+|-..|
T Consensus 82 GeT~H~e~V~~~v~~gl~~vs-------l~~~~PV~fGVLT~~~ 118 (158)
T PRK12419 82 GGIYRHEFVAQAVIDGLMRVQ-------LDTEVPVFSVVLTPHH 118 (158)
T ss_pred CCCchhHHHHHHHHHHHHHHH-------hccCCCEEEEecCCCc
Confidence 4433 246677776422 2234455567765555
No 203
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=31.20 E-value=2.3e+02 Score=25.02 Aligned_cols=15 Identities=47% Similarity=0.625 Sum_probs=13.0
Q ss_pred HcCCCEEEEEeCCch
Q 018199 103 KEGADAVIAVGGDGT 117 (359)
Q Consensus 103 ~~~~d~ivv~GGDGT 117 (359)
.++||+|++.||-|.
T Consensus 83 ~~dyDalviPGG~g~ 97 (217)
T PRK11780 83 AEDFDALIVPGGFGA 97 (217)
T ss_pred hhhCCEEEECCCCch
Confidence 467999999999885
No 204
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]
Probab=31.18 E-value=2e+02 Score=27.25 Aligned_cols=62 Identities=18% Similarity=0.273 Sum_probs=34.7
Q ss_pred CCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEecCCchHHHHHHHHH----HHcCCCEEEEEeC
Q 018199 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREA----IKEGADAVIAVGG 114 (359)
Q Consensus 46 ~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t~~~~~a~~~~~~~----~~~~~d~ivv~GG 114 (359)
.+|+++++---| =+...+++++...|+. .++.++---.|+.-.+...++ ..++.|.|+++||
T Consensus 29 ~~kVLi~YGGGS--IKrnGvydqV~~~Lkg-----~~~~E~~GVEPNP~~~Tv~kaV~i~kee~idflLAVGG 94 (384)
T COG1979 29 DAKVLIVYGGGS--IKKNGVYDQVVEALKG-----IEVIEFGGVEPNPRLETLMKAVEICKEENIDFLLAVGG 94 (384)
T ss_pred cCeEEEEecCcc--ccccchHHHHHHHhcC-----ceEEEecCCCCCchHHHHHHHHHHHHHcCceEEEEecC
Confidence 489999994322 1223357888777763 233333322333322222221 2378999999999
No 205
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=31.14 E-value=3.7e+02 Score=23.68 Aligned_cols=74 Identities=11% Similarity=0.129 Sum_probs=39.2
Q ss_pred cEEEEEcCCCCCCchhhhHHHHHHHHHhccc-cccceEEEecCC---chHHHHHHHHHHHcCCCEEEEEeCCch-HHHHH
Q 018199 48 DLVFVVNPRGASGRTGKEWKKLLPYLRSRLS-VDCNICESLTSG---PSHAIDITREAIKEGADAVIAVGGDGT-LHEVV 122 (359)
Q Consensus 48 ~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~-~~~~~~~~~t~~---~~~a~~~~~~~~~~~~d~ivv~GGDGT-v~evl 122 (359)
++.+|+...+ ...|.++...+.+.+. .++++.+..+.. +....+..+++...+.|.|++.+.+.+ +.+.+
T Consensus 1 ~igvi~~~~~-----~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~ 75 (275)
T cd06320 1 KYGVVLKTLS-----NEFWRSLKEGYENEAKKLGVSVDIQAAPSEGDQQGQLSIAENMINKGYKGLLFSPISDVNLVPAV 75 (275)
T ss_pred CeeEEEecCC-----CHHHHHHHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHHHhCCCEEEECCCChHHhHHHH
Confidence 4567775332 2334444444443322 234444333322 222345566677778999998877653 56666
Q ss_pred hHhH
Q 018199 123 NGFF 126 (359)
Q Consensus 123 ngl~ 126 (359)
..+.
T Consensus 76 ~~~~ 79 (275)
T cd06320 76 ERAK 79 (275)
T ss_pred HHHH
Confidence 6654
No 206
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=29.80 E-value=4.5e+02 Score=24.22 Aligned_cols=77 Identities=8% Similarity=0.013 Sum_probs=47.0
Q ss_pred CCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceE--EEecCCchHHHHHHHHHHHcCCCEEEEEeCCchHHHHHh
Q 018199 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNIC--ESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVN 123 (359)
Q Consensus 46 ~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~--~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTv~evln 123 (359)
.+++.+|+.... -+ ...++.+...+++. +..+. ........+....+.++...+.|+|++.+....+..+++
T Consensus 135 ~~~v~ii~~~~~-~g--~~~~~~~~~~~~~~---g~~v~~~~~~~~~~~d~~~~v~~l~~~~~d~v~~~~~~~~~~~~~~ 208 (340)
T cd06349 135 FKKVAILSVNTD-WG--RTSADIFVKAAEKL---GGQVVAHEEYVPGEKDFRPTITRLRDANPDAIILISYYNDGAPIAR 208 (340)
T ss_pred CcEEEEEecCCh-Hh--HHHHHHHHHHHHHc---CCEEEEEEEeCCCCCcHHHHHHHHHhcCCCEEEEccccchHHHHHH
Confidence 467777775543 22 23344455555543 22222 112223456667778877888999999888788888888
Q ss_pred HhHhC
Q 018199 124 GFFSA 128 (359)
Q Consensus 124 gl~~~ 128 (359)
.+...
T Consensus 209 ~~~~~ 213 (340)
T cd06349 209 QARAV 213 (340)
T ss_pred HHHHc
Confidence 87643
No 207
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=29.64 E-value=4.1e+02 Score=23.79 Aligned_cols=31 Identities=13% Similarity=0.099 Sum_probs=21.5
Q ss_pred HHHHHHHHcCCCEEEEEeCCch-HHHHHhHhH
Q 018199 96 DITREAIKEGADAVIAVGGDGT-LHEVVNGFF 126 (359)
Q Consensus 96 ~~~~~~~~~~~d~ivv~GGDGT-v~evlngl~ 126 (359)
+..+.+...++|.|++.+.|-. ..+.++.+.
T Consensus 47 ~~l~~~~~~~~dgiii~~~~~~~~~~~i~~~~ 78 (294)
T cd06316 47 ADIETTISQKPDIIISIPVDPVSTAAAYKKVA 78 (294)
T ss_pred HHHHHHHHhCCCEEEEcCCCchhhhHHHHHHH
Confidence 4555666778999999887754 356666664
No 208
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=29.49 E-value=81 Score=29.59 Aligned_cols=144 Identities=16% Similarity=0.181 Sum_probs=81.3
Q ss_pred cccccCCCCCCCCCCCCCCCCCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEecCCchHHHHHHHHHHHcC
Q 018199 26 PMALDLSPNPISHGAASSSRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEG 105 (359)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~ 105 (359)
++.+.|+-++. -.+.-+++.++|||..-+ .....+.+...+++. ++++.+....+..+....+ +.....
T Consensus 144 ~v~q~i~lik~-----~~Pnak~Igv~Y~p~E~n--s~~l~eelk~~A~~~---Gl~vve~~v~~~ndi~~a~-~~l~g~ 212 (322)
T COG2984 144 PVAQQIELIKA-----LLPNAKSIGVLYNPGEAN--SVSLVEELKKEARKA---GLEVVEAAVTSVNDIPRAV-QALLGK 212 (322)
T ss_pred hHHHHHHHHHH-----hCCCCeeEEEEeCCCCcc--cHHHHHHHHHHHHHC---CCEEEEEecCcccccHHHH-HHhcCC
Confidence 46666666633 367789999999998632 233344444444442 4555544444444444433 334466
Q ss_pred CCEEEEEeCCchHHHHHhHhHhCCccccccccccCCcceEEEeeCcChhhhhh-----hcCCCC-----CHHHHHHHHHc
Q 018199 106 ADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFAR-----TFGWRN-----DPYEAVERIAK 175 (359)
Q Consensus 106 ~d~ivv~GGDGTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~GTgN~~Ar-----~lg~~~-----~~~~al~~i~~ 175 (359)
.|+|.+ ==|=|++...+.++... ...++|+- ++..++.+ ++|++. +..+.+..|++
T Consensus 213 ~d~i~~-p~dn~i~s~~~~l~~~a---------~~~kiPli----~sd~~~V~~Ga~aA~gvdy~~~G~qtg~~v~~ILk 278 (322)
T COG2984 213 VDVIYI-PTDNLIVSAIESLLQVA---------NKAKIPLI----ASDTSSVKEGALAALGVDYKDLGKQTGEMVVKILK 278 (322)
T ss_pred CcEEEE-ecchHHHHHHHHHHHHH---------HHhCCCee----cCCHHHHhcCcceeeccCHHHHHHHHHHHHHHHHc
Confidence 777665 46889999888887632 23455542 34444443 355542 11233666777
Q ss_pred CC-eeeEeEEEEEccCCCceEEEE
Q 018199 176 GV-RSWVDVGVINGETGEPHYFIN 198 (359)
Q Consensus 176 g~-~~~iD~~~v~~~~~~~~~f~~ 198 (359)
|+ +..+.+....+ ..+++|
T Consensus 279 G~~p~dip~~~~~~----~~~~iN 298 (322)
T COG2984 279 GKKPKDIPVSVAAG----FKLVIN 298 (322)
T ss_pred CCCccccCcccccc----ceEEEc
Confidence 64 45555555444 367766
No 209
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=29.38 E-value=4.1e+02 Score=24.31 Aligned_cols=76 Identities=14% Similarity=0.067 Sum_probs=44.4
Q ss_pred CCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceE--EEecCCchHHHHHHHHHHHcCCCEEEEEeCCchHHHHHh
Q 018199 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNIC--ESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVN 123 (359)
Q Consensus 46 ~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~--~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTv~evln 123 (359)
.+++.++.+..+ .++ ...+.+...+++. +.++. ........+...++.++...++|+|++.+...-...+++
T Consensus 134 ~~~v~~l~~~~~-~g~--~~~~~~~~~~~~~---G~~v~~~~~~~~~~~d~~~~v~~~~~~~pd~v~~~~~~~~~~~~~~ 207 (336)
T cd06360 134 YKKVVTVAWDYA-FGY--EVVEGFKEAFTEA---GGKIVKELWVPFGTSDFASYLAQIPDDVPDAVFVFFAGGDAIKFVK 207 (336)
T ss_pred CCeEEEEeccch-hhH--HHHHHHHHHHHHc---CCEEEEEEecCCCCcchHHHHHHHHhcCCCEEEEecccccHHHHHH
Confidence 577888876443 222 2233344455543 22222 222334556677778887888999988766555666777
Q ss_pred HhHh
Q 018199 124 GFFS 127 (359)
Q Consensus 124 gl~~ 127 (359)
.+..
T Consensus 208 ~~~~ 211 (336)
T cd06360 208 QYDA 211 (336)
T ss_pred HHHH
Confidence 7654
No 210
>PRK11253 ldcA L,D-carboxypeptidase A; Provisional
Probab=29.35 E-value=1.6e+02 Score=27.54 Aligned_cols=67 Identities=13% Similarity=0.072 Sum_probs=33.9
Q ss_pred EEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEec------CCchHHHHHHHHHHH----cC-CCEEEEE-eCCch
Q 018199 50 VFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLT------SGPSHAIDITREAIK----EG-ADAVIAV-GGDGT 117 (359)
Q Consensus 50 ~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t------~~~~~a~~~~~~~~~----~~-~d~ivv~-GGDGT 117 (359)
.-|+.|.|+.. ....+++....|++. ++++..-.. -..+..++.++++.. .+ .++|+++ ||+|+
T Consensus 4 I~viAPSs~~~-~~~~~~~~i~~L~~~---G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~a~~dpi~aI~~~rGGyg~ 79 (305)
T PRK11253 4 FHLIAPSGYPI-DQAAALRGVQRLTDA---GHQVENVEVIARRYQRFAGTDGERLADLNSLADLTTPNTIVLAVRGGYGA 79 (305)
T ss_pred EEEEeCCCCCC-CHHHHHHHHHHHHhC---CCEEeeccccccccCccCCCHHHHHHHHHHHHhcCCCccEEEEecccCCH
Confidence 34688987643 234455556667653 232222111 113334444444321 22 7777666 99998
Q ss_pred HHH
Q 018199 118 LHE 120 (359)
Q Consensus 118 v~e 120 (359)
..-
T Consensus 80 ~rl 82 (305)
T PRK11253 80 SRL 82 (305)
T ss_pred hHh
Confidence 653
No 211
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=29.23 E-value=51 Score=27.25 Aligned_cols=30 Identities=37% Similarity=0.483 Sum_probs=20.0
Q ss_pred CCEEEEEeCCchHHHHHhHhHhCCccccccccccCCcceEEEeeCcC
Q 018199 106 ADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGT 152 (359)
Q Consensus 106 ~d~ivv~GGDGTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~GT 152 (359)
.|+||.-||=||+.|++. ...|+-++|.-.
T Consensus 73 aDlvIs~aG~~Ti~E~l~-----------------~g~P~I~ip~~~ 102 (167)
T PF04101_consen 73 ADLVISHAGAGTIAEALA-----------------LGKPAIVIPLPG 102 (167)
T ss_dssp HSEEEECS-CHHHHHHHH-----------------CT--EEEE--TT
T ss_pred cCEEEeCCCccHHHHHHH-----------------cCCCeeccCCCC
Confidence 578888899999999996 246777788765
No 212
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=29.09 E-value=2.4e+02 Score=26.48 Aligned_cols=70 Identities=20% Similarity=0.294 Sum_probs=33.5
Q ss_pred cEEEEEcCCCCCCch----hhhHHHHHHHHHhccccccceEEEecCCchHHHHHHHHHHHcCCCEEEEEeCCchHHHHHh
Q 018199 48 DLVFVVNPRGASGRT----GKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVN 123 (359)
Q Consensus 48 ~~~iiiNP~SG~g~~----~~~~~~~~~~l~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTv~evln 123 (359)
+-+|++||.+.++.. .+.|.++...|.+. + +.++.+.++ +-.+.++++... ....+.+=|-.++.+++.
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~---~--~~Vvl~g~~-~e~e~~~~i~~~-~~~~~~l~~k~sL~e~~~ 247 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLIAK---G--YQVVLFGGP-DEEERAEEIAKG-LPNAVILAGKTSLEELAA 247 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHHHC---C--CEEEEecCh-HHHHHHHHHHHh-cCCccccCCCCCHHHHHH
Confidence 457889998433332 22355666666553 2 344555555 444444444322 111111344455555554
Q ss_pred H
Q 018199 124 G 124 (359)
Q Consensus 124 g 124 (359)
-
T Consensus 248 l 248 (334)
T COG0859 248 L 248 (334)
T ss_pred H
Confidence 3
No 213
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=28.79 E-value=3.1e+02 Score=27.01 Aligned_cols=74 Identities=16% Similarity=0.236 Sum_probs=45.5
Q ss_pred CCCCCCCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEec--CCchHHHHHHHHHH---H-cCCCEEEEEeC
Q 018199 41 ASSSRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLT--SGPSHAIDITREAI---K-EGADAVIAVGG 114 (359)
Q Consensus 41 ~~~~~~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t--~~~~~a~~~~~~~~---~-~~~d~ivv~GG 114 (359)
+...-|+++.||-.|.+ ..++.+...+..++. .+++.++.+ ++.+-+.++++.+. . .++|+||++=|
T Consensus 124 ~lP~~p~~i~vits~~~------aa~~D~~~~~~~r~p-~~~~~~~~~~vQG~~a~~~i~~al~~~~~~~~~dviii~RG 196 (432)
T TIGR00237 124 PLPHFPKRVGVITSQTG------AALADILHILKRRDP-SLKVVIYPTLVQGEGAVQSIVESIELANTKNECDVLIVGRG 196 (432)
T ss_pred CCCCCCCEEEEEeCCcc------HHHHHHHHHHHhhCC-CceEEEecccccCccHHHHHHHHHHHhhcCCCCCEEEEecC
Confidence 44556899999998874 224456666666542 344544443 34444455555432 1 34799999988
Q ss_pred CchHHHH
Q 018199 115 DGTLHEV 121 (359)
Q Consensus 115 DGTv~ev 121 (359)
=|.+-+.
T Consensus 197 GGs~eDL 203 (432)
T TIGR00237 197 GGSLEDL 203 (432)
T ss_pred CCCHHHh
Confidence 8998653
No 214
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=28.54 E-value=2.7e+02 Score=26.17 Aligned_cols=31 Identities=23% Similarity=0.370 Sum_probs=19.6
Q ss_pred EecCCchHHHHHHHHHHHcCCCEEEEEeCCc
Q 018199 86 SLTSGPSHAIDITREAIKEGADAVIAVGGDG 116 (359)
Q Consensus 86 ~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDG 116 (359)
+..+..+...+..+++..+++|.||+.||=|
T Consensus 200 iv~Dd~~~I~~ai~~~~~~g~DlIItTGGts 230 (312)
T cd03522 200 IVPHDEAAIAAAIAEALEAGAELLILTGGAS 230 (312)
T ss_pred EcCCCHHHHHHHHHHHhcCCCCEEEEeCCcc
Confidence 3444555555555555545689999999843
No 215
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=28.49 E-value=2.1e+02 Score=25.19 Aligned_cols=74 Identities=20% Similarity=0.324 Sum_probs=34.0
Q ss_pred CCcEEEEEcCCCCCCchhhhH-----HHHHHHHHhccccccceEEEecCCchH-HHHHHHHHHHcCCCEEEEEeCCchHH
Q 018199 46 RRDLVFVVNPRGASGRTGKEW-----KKLLPYLRSRLSVDCNICESLTSGPSH-AIDITREAIKEGADAVIAVGGDGTLH 119 (359)
Q Consensus 46 ~~~~~iiiNP~SG~g~~~~~~-----~~~~~~l~~~~~~~~~~~~~~t~~~~~-a~~~~~~~~~~~~d~ivv~GGDGTv~ 119 (359)
..+-+|++||.++. ..+.| .++...|.+ .. +.++.+..+++ ..+.+.+....-.+.++..-|.-++.
T Consensus 103 ~~~~~i~i~~~a~~--~~k~wp~e~~~~l~~~l~~----~~-~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 175 (247)
T PF01075_consen 103 KDKPYIGINPGASW--PSKRWPAEKWAELIERLKE----RG-YRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKTSLR 175 (247)
T ss_dssp TTSSEEEEE---SS--GGGS--HHHHHHHHHHHCC----CT--EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS-HH
T ss_pred ccCCeEEEeecCCC--ccccCCHHHHHHHHHHHHh----hC-ceEEEEccchHHHHHHHHHHHHhcccceEeecCCCCHH
Confidence 34556888998754 34444 333333332 22 34455555555 45555554432111145556667888
Q ss_pred HHHhHhH
Q 018199 120 EVVNGFF 126 (359)
Q Consensus 120 evlngl~ 126 (359)
+++.-+.
T Consensus 176 e~~ali~ 182 (247)
T PF01075_consen 176 ELAALIS 182 (247)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8886553
No 216
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=28.45 E-value=1.4e+02 Score=23.07 Aligned_cols=34 Identities=24% Similarity=0.154 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHcCCCEEEEEeCCchHHHHHhHhH
Q 018199 93 HAIDITREAIKEGADAVIAVGGDGTLHEVVNGFF 126 (359)
Q Consensus 93 ~a~~~~~~~~~~~~d~ivv~GGDGTv~evlngl~ 126 (359)
..+++.+.+...++|.|.+..-++.-.+.+..+.
T Consensus 38 ~~~~l~~~~~~~~pdvV~iS~~~~~~~~~~~~~i 71 (119)
T cd02067 38 PPEEIVEAAKEEDADAIGLSGLLTTHMTLMKEVI 71 (119)
T ss_pred CHHHHHHHHHHcCCCEEEEeccccccHHHHHHHH
Confidence 3456666666778898888887554444444443
No 217
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=28.42 E-value=4.6e+02 Score=23.92 Aligned_cols=75 Identities=12% Similarity=0.259 Sum_probs=38.1
Q ss_pred CCcEEEEEcCCCCCCchhhhHHHHHHHHHhccc-cccceEEEecCC-chHHHHHHHHHHHcCCCEEEEEeCCchHHHHHh
Q 018199 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLS-VDCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGTLHEVVN 123 (359)
Q Consensus 46 ~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~-~~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGTv~evln 123 (359)
.+.+.+++ |... ...|.++...+.+.+. .++.+.+..+.. +....+..+.+...++|.|++.+.+-.-.+.+.
T Consensus 61 ~~~Igvv~-~~~~----~~~~~~l~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~ 135 (328)
T PRK11303 61 TRSIGLII-PDLE----NTSYARIAKYLERQARQRGYQLLIACSDDQPDNEMRCAEHLLQRQVDALIVSTSLPPEHPFYQ 135 (328)
T ss_pred CceEEEEe-CCCC----CchHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCChHHHH
Confidence 34566666 3321 1234444444433322 234544444432 223334555666778999999887543345555
Q ss_pred Hh
Q 018199 124 GF 125 (359)
Q Consensus 124 gl 125 (359)
.+
T Consensus 136 ~l 137 (328)
T PRK11303 136 RL 137 (328)
T ss_pred HH
Confidence 44
No 218
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=28.16 E-value=94 Score=34.88 Aligned_cols=56 Identities=9% Similarity=-0.003 Sum_probs=35.6
Q ss_pred HHHHcCCCEEEEEeCCchHHHHHhHhHhCCccccccccccCCcceEEEeeCcChhhhhh
Q 018199 100 EAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFAR 158 (359)
Q Consensus 100 ~~~~~~~d~ivv~GGDGTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~GTgN~~Ar 158 (359)
.+...+.|.+|++|||||+..+.. |.+.-... ..+ -....+++--+|.==-||+..
T Consensus 795 ~L~~~~Id~LVvIGGDgS~t~A~~-Lae~~~~~-~~~-~~~~gi~VIgVPkTIDNDl~~ 850 (1328)
T PTZ00468 795 LLSFFNMRAIAIVGNSEAATFGAS-LSEQLICM-SLN-GMKSEIPVVFVPVCLENSISH 850 (1328)
T ss_pred HHHHcCCCEEEEeCCchHHHHHHH-HHHHHhhh-ccc-cccCCCcEEEeCccccCCCCC
Confidence 344568999999999999976553 32210000 000 012468999999888899876
No 219
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=28.11 E-value=72 Score=31.09 Aligned_cols=33 Identities=42% Similarity=0.564 Sum_probs=28.7
Q ss_pred HHcCCCEEEEEeCCchHHHHHhHhHhCCccccccccccCCcceEEEeeCc
Q 018199 102 IKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLG 151 (359)
Q Consensus 102 ~~~~~d~ivv~GGDGTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~G 151 (359)
.....|++|.-||=||+.+.+.. .+|+-++|.+
T Consensus 297 ~l~~ad~vI~hGG~gtt~eaL~~-----------------gvP~vv~P~~ 329 (406)
T COG1819 297 LLPRADAVIHHGGAGTTSEALYA-----------------GVPLVVIPDG 329 (406)
T ss_pred HhhhcCEEEecCCcchHHHHHHc-----------------CCCEEEecCC
Confidence 34678999999999999999863 5899999998
No 220
>TIGR00557 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase. This model represents PdxA, an NAD+-dependent 4-hydroxythreonine 4-phosphate dehydrogenase (EC 1.1.1.262) active in pyridoxal phosphate biosynthesis.
Probab=27.93 E-value=86 Score=29.55 Aligned_cols=62 Identities=26% Similarity=0.277 Sum_probs=33.9
Q ss_pred CCcEEEEEcCCCCCCchh--hhHHHHHHHHHhccccccceEEEecCCchHHHHHHHHHHHcCCCEEEEE
Q 018199 46 RRDLVFVVNPRGASGRTG--KEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAV 112 (359)
Q Consensus 46 ~~~~~iiiNP~SG~g~~~--~~~~~~~~~l~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~ 112 (359)
||=...=+||+||.+..- +..+-+.|.+++.-..++++ .+|-.+..+-.+....+||.||+.
T Consensus 196 PrIaV~gLNPHAGE~G~~G~EE~~iI~PAI~~~~~~G~~v-----~GP~paDt~F~~~~~~~~D~vvaM 259 (320)
T TIGR00557 196 PRIAVAGLNPHAGEGGHLGREEIDIIIPALEALRAEGIDL-----IGPLPADTLFHPAALAKYDAVLAM 259 (320)
T ss_pred CCEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHHHCCCcc-----cCCCCchhhcccccccCCCEEEEC
Confidence 443455589999864332 22334667777643333332 233334334444445679999864
No 221
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=27.84 E-value=3.2e+02 Score=26.80 Aligned_cols=73 Identities=21% Similarity=0.294 Sum_probs=45.3
Q ss_pred CCCCCCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEecCC--chHHHHHHHHHH---HcCCCEEEEEeCCc
Q 018199 42 SSSRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSG--PSHAIDITREAI---KEGADAVIAVGGDG 116 (359)
Q Consensus 42 ~~~~~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t~~--~~~a~~~~~~~~---~~~~d~ivv~GGDG 116 (359)
...-|+++.||--|.+ ..++.+...+...+. .+++.++.+.= .+-+.++++.+. ..++|+||++=|=|
T Consensus 131 lP~~p~~I~viTs~~g------Aa~~D~~~~~~~r~p-~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGG 203 (438)
T PRK00286 131 LPFFPKRIGVITSPTG------AAIRDILTVLRRRFP-LVEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGG 203 (438)
T ss_pred CCCCCCEEEEEeCCcc------HHHHHHHHHHHhcCC-CCeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCC
Confidence 3445899999998874 224456666666543 35565555543 333445554432 22379999998888
Q ss_pred hHHHH
Q 018199 117 TLHEV 121 (359)
Q Consensus 117 Tv~ev 121 (359)
.+.+.
T Consensus 204 S~eDL 208 (438)
T PRK00286 204 SLEDL 208 (438)
T ss_pred CHHHh
Confidence 88654
No 222
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=27.57 E-value=98 Score=29.29 Aligned_cols=63 Identities=25% Similarity=0.273 Sum_probs=35.4
Q ss_pred CCCcEEEEEcCCCCCCch--hhhHHHHHHHHHhccccccceEEEecCCchHHHHHHHHHHHcCCCEEEEE
Q 018199 45 RRRDLVFVVNPRGASGRT--GKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAV 112 (359)
Q Consensus 45 ~~~~~~iiiNP~SG~g~~--~~~~~~~~~~l~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~ 112 (359)
+||=...=+||++|.+.. .+..+-+.|.+++.-..++++ .+|-.+..+-.+....+||.||+.
T Consensus 198 ~PrIaV~GLNPHAGE~G~~G~EE~~iI~PAi~~~~~~Gi~v-----~GP~paDt~F~~~~~~~~D~vvaM 262 (329)
T PRK01909 198 APRILVTGLNPHAGENGYLGREEIDVIEPALARARAAGIDA-----RGPYPADTLFQPRYLEDADCVLAM 262 (329)
T ss_pred CCCEEEEeeCCCCCCCCCCcHHHHHHHHHHHHHHHHCCCCc-----cCCCCchhhcccccccCCCEEEEc
Confidence 344445558999986433 223344678777653333332 234444444444445679999964
No 223
>PRK06703 flavodoxin; Provisional
Probab=27.42 E-value=3.3e+02 Score=21.95 Aligned_cols=63 Identities=21% Similarity=0.148 Sum_probs=34.3
Q ss_pred CCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEecCCchHHHHHHHHHHHcCCCEEEEEe---CCchHHH
Q 018199 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVG---GDGTLHE 120 (359)
Q Consensus 46 ~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~G---GDGTv~e 120 (359)
|+++.|++=. ..|.+.+..+.+...+... +..+.+....... .. ...++|.|+++- |+|-+..
T Consensus 1 mmkv~IiY~S--~tGnT~~iA~~ia~~l~~~---g~~v~~~~~~~~~-~~------~l~~~d~viigspt~~~g~~p~ 66 (151)
T PRK06703 1 MAKILIAYAS--MSGNTEDIADLIKVSLDAF---DHEVVLQEMDGMD-AE------ELLAYDGIILGSYTWGDGDLPY 66 (151)
T ss_pred CCeEEEEEEC--CCchHHHHHHHHHHHHHhc---CCceEEEehhhCC-HH------HHhcCCcEEEEECCCCCCcCcH
Confidence 4578888844 4567777777777777643 2333333221111 11 124577777754 6775543
No 224
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=27.40 E-value=4.9e+02 Score=23.93 Aligned_cols=76 Identities=11% Similarity=0.078 Sum_probs=45.4
Q ss_pred CCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEE--EecCCchHHHHHHHHHHHcCCCEEEEEeCCchHHHHHh
Q 018199 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICE--SLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVN 123 (359)
Q Consensus 46 ~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~--~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTv~evln 123 (359)
.+++.+++...+ -++ ...+.+...+++. +.++.. .......+....++++...+.|.|++++.+.....++.
T Consensus 141 ~~~v~~v~~~~~-~g~--~~~~~~~~~~~~~---g~~v~~~~~~~~~~~d~~~~v~~l~~~~~d~i~~~~~~~~~~~~~~ 214 (345)
T cd06338 141 PKKVAILYADDP-FSQ--DVAEGAREKAEAA---GLEVVYDETYPPGTADLSPLISKAKAAGPDAVVVAGHFPDAVLLVR 214 (345)
T ss_pred CceEEEEecCCc-ccH--HHHHHHHHHHHHc---CCEEEEEeccCCCccchHHHHHHHHhcCCCEEEECCcchhHHHHHH
Confidence 577777765433 222 2334444455543 233321 11223346667777877788999999888888888887
Q ss_pred HhHh
Q 018199 124 GFFS 127 (359)
Q Consensus 124 gl~~ 127 (359)
.+.+
T Consensus 215 ~~~~ 218 (345)
T cd06338 215 QMKE 218 (345)
T ss_pred HHHH
Confidence 7754
No 225
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=27.40 E-value=4.8e+02 Score=23.86 Aligned_cols=78 Identities=9% Similarity=0.084 Sum_probs=50.4
Q ss_pred CCCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccce--EEEecCCchHHHHHHHHHHHcCCCEEEEEeCCchHHHHH
Q 018199 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNI--CESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVV 122 (359)
Q Consensus 45 ~~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~--~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTv~evl 122 (359)
..+++.+|....+ .+....+.+...+++. ++++ .........+...+++++...+.|.|+.+++-+....++
T Consensus 134 g~~~v~iv~~~~~---~g~~~~~~~~~~~~~~---G~~vv~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~~~~~~~~~ 207 (343)
T PF13458_consen 134 GAKKVAIVYPDDP---YGRSLAEAFRKALEAA---GGKVVGEIRYPPGDTDFSALVQQLKSAGPDVVVLAGDPADAAAFL 207 (343)
T ss_dssp TTSEEEEEEESSH---HHHHHHHHHHHHHHHT---TCEEEEEEEE-TTSSHHHHHHHHHHHTTTSEEEEESTHHHHHHHH
T ss_pred CCcEEEEEecCch---hhhHHHHHHHHHHhhc---CceeccceecccccccchHHHHHHhhcCCCEEEEeccchhHHHHH
Confidence 3688999886542 1122333455555554 2232 123344556777788888888999988888888899999
Q ss_pred hHhHhC
Q 018199 123 NGFFSA 128 (359)
Q Consensus 123 ngl~~~ 128 (359)
+.+.+.
T Consensus 208 ~~~~~~ 213 (343)
T PF13458_consen 208 RQLRQL 213 (343)
T ss_dssp HHHHHT
T ss_pred HHHHhh
Confidence 988654
No 226
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=27.32 E-value=1.3e+02 Score=26.81 Aligned_cols=48 Identities=29% Similarity=0.353 Sum_probs=32.5
Q ss_pred HHHHHHHHcCCCEEEEEeCC-c-hHHHHHhHhHhCCccccccccccCCcceEEEeeCcChhh
Q 018199 96 DITREAIKEGADAVIAVGGD-G-TLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSD 155 (359)
Q Consensus 96 ~~~~~~~~~~~d~ivv~GGD-G-Tv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~GTgN~ 155 (359)
+..+.+...+.|.|++-|-| + |+.+++..+-+ ..++|+-+.|.+....
T Consensus 23 ~~~~~~~~~gtDai~VGGS~~~~~~d~vv~~ik~------------~~~lPvilfPg~~~~v 72 (230)
T PF01884_consen 23 EALEAACESGTDAIIVGGSDTGVTLDNVVALIKR------------VTDLPVILFPGSPSQV 72 (230)
T ss_dssp HHHHHHHCTT-SEEEEE-STHCHHHHHHHHHHHH------------HSSS-EEEETSTCCG-
T ss_pred HHHHHHHhcCCCEEEECCCCCccchHHHHHHHHh------------cCCCCEEEeCCChhhc
Confidence 34455566889999999999 6 78888887643 2689999998776443
No 227
>PTZ00287 6-phosphofructokinase; Provisional
Probab=27.17 E-value=1e+02 Score=34.91 Aligned_cols=63 Identities=21% Similarity=0.263 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHcCCCEEEEEeCCchHHHHHhHhHhCCccccccccccCCcceEEEeeCcChhhhh-----hhcCCC
Q 018199 93 HAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGTGSDFA-----RTFGWR 163 (359)
Q Consensus 93 ~a~~~~~~~~~~~~d~ivv~GGDGTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~GTgN~~A-----r~lg~~ 163 (359)
+...+++.+..-+.|.+|++|||||...+.. |.+.. .....++.+-.+|.==-||+. .++|..
T Consensus 259 ~~~ki~e~lkkl~Id~LViIGGddS~~~A~~-Lae~~-------~~~gi~i~VIGIPKTIDNDL~~~gTD~S~GFD 326 (1419)
T PTZ00287 259 DLIAIENIVAKLKLNGLVIIGGDGSNSNAAL-ISEYF-------AERQIPISIIGIPKTIDGDLKSEAIEISFGFD 326 (1419)
T ss_pred HHHHHHHHHHHcCCCEEEEECChhHHHHHHH-HHHHH-------HhcCCCeeEEEEeeeecCCCCCCCCCcCCCHH
Confidence 4444455555668999999999999987764 32210 001233446778987789988 455654
No 228
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=27.08 E-value=1.1e+02 Score=26.05 Aligned_cols=46 Identities=24% Similarity=0.397 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHcCCCEEEEEeC--CchHHHHHhHhHhCCccccccccccCCcceEEEeeCc
Q 018199 92 SHAIDITREAIKEGADAVIAVGG--DGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLG 151 (359)
Q Consensus 92 ~~a~~~~~~~~~~~~d~ivv~GG--DGTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~G 151 (359)
..|.++.+.++..+ ..++.|| .|..-.+.++..+.+ ...+|++|..
T Consensus 19 ~~A~~lG~~la~~g--~~lV~GGg~~GlM~a~a~ga~~~g------------G~viGi~p~~ 66 (178)
T TIGR00730 19 ELAAELGAYLAGQG--WGLVYGGGRVGLMGAIADAAMENG------------GTAVGVNPSG 66 (178)
T ss_pred HHHHHHHHHHHHCC--CEEEECCChHhHHHHHHHHHHhcC------------CeEEEecchh
Confidence 34556666665544 3455554 799999999987533 4679999865
No 229
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=27.02 E-value=96 Score=23.89 Aligned_cols=19 Identities=16% Similarity=0.015 Sum_probs=8.9
Q ss_pred HHHHHHHHHcCCCEEEEEe
Q 018199 95 IDITREAIKEGADAVIAVG 113 (359)
Q Consensus 95 ~~~~~~~~~~~~d~ivv~G 113 (359)
.++.+.+...++|.|.+-.
T Consensus 41 ~~l~~~~~~~~pd~V~iS~ 59 (121)
T PF02310_consen 41 EELVEALRAERPDVVGISV 59 (121)
T ss_dssp HHHHHHHHHTTCSEEEEEE
T ss_pred HHHHHHHhcCCCcEEEEEc
Confidence 3344444444555555544
No 230
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=26.69 E-value=4.5e+02 Score=23.21 Aligned_cols=61 Identities=11% Similarity=0.029 Sum_probs=31.9
Q ss_pred hHHHHHHHHHhccc-cccceEEEecCC---chHHHHHHHHHHHcCCCEEEEEeCCchHHHHHhHh
Q 018199 65 EWKKLLPYLRSRLS-VDCNICESLTSG---PSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGF 125 (359)
Q Consensus 65 ~~~~~~~~l~~~~~-~~~~~~~~~t~~---~~~a~~~~~~~~~~~~d~ivv~GGDGTv~evlngl 125 (359)
.|.++...+.+.+. .++++.+..+.. ...-.+..+.+...++|.|++.+.|.+-.+.+..+
T Consensus 13 f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiI~~~~~~~~~~~~~~~ 77 (268)
T cd06306 13 YWLSVNYGMVEEAKRLGVSLKLLEAGGYPNLAKQIAQLEDCAAWGADAILLGAVSPDGLNEILQQ 77 (268)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCChhhHHHHHHH
Confidence 45555444443322 234444333322 12233456666678899999998776543334444
No 231
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=26.64 E-value=2e+02 Score=31.10 Aligned_cols=75 Identities=16% Similarity=0.109 Sum_probs=43.6
Q ss_pred CCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEe--cCCc--hHHHHHHHHHHHcCCCEEEEEeCCchHHHH
Q 018199 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESL--TSGP--SHAIDITREAIKEGADAVIAVGGDGTLHEV 121 (359)
Q Consensus 46 ~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~--t~~~--~~a~~~~~~~~~~~~d~ivv~GGDGTv~ev 121 (359)
.++++||..+..-+ ...++++...|... ...+++.++. ...+ ....+.+..+...+.|.||++|| |++-++
T Consensus 480 ~~~~lvVtd~~~~~---~g~~~~v~~~L~~~-~~~i~~~~~~~v~~np~~~~v~~~~~~~~~~~~D~IIaiGG-GSviD~ 554 (862)
T PRK13805 480 KKRAFIVTDRFMVE---LGYVDKVTDVLKKR-ENGVEYEVFSEVEPDPTLSTVRKGAELMRSFKPDTIIALGG-GSPMDA 554 (862)
T ss_pred CCEEEEEECcchhh---cchHHHHHHHHhcc-cCCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHH
Confidence 47888988765421 12455666667621 1223343332 1122 34555555666678999999998 777776
Q ss_pred HhHh
Q 018199 122 VNGF 125 (359)
Q Consensus 122 lngl 125 (359)
.-.+
T Consensus 555 AK~i 558 (862)
T PRK13805 555 AKIM 558 (862)
T ss_pred HHHH
Confidence 6554
No 232
>COG1049 AcnB Aconitase B [Energy production and conversion]
Probab=26.51 E-value=46 Score=33.89 Aligned_cols=51 Identities=29% Similarity=0.494 Sum_probs=34.3
Q ss_pred EEEEeCCchHHHHHhHhHhCCccccccccccCCcceEEE-eeCcChh-hhhhhcC
Q 018199 109 VIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGL-IPLGTGS-DFARTFG 161 (359)
Q Consensus 109 ivv~GGDGTv~evlngl~~~~~~~~~~~~~~~~~~~lgi-iP~GTgN-~~Ar~lg 161 (359)
|-.==|||-+|..+|.++--+.... --.+..+.|+|| +|+|||= .||...|
T Consensus 461 VslrpgdGVIHswLNrmllpDtvgt--GGDSHTRfpiGisFpAgSGlVAfAaatG 513 (852)
T COG1049 461 VSLRPGDGVIHSWLNRMLLPDTVGT--GGDSHTRFPIGISFPAGSGLVAFAAATG 513 (852)
T ss_pred eecCCCCccHHHHHHhccCCcceec--CCcccccccccceecCCCchhhhhHhcC
Confidence 4444699999999999864321110 012467899998 7999985 4666655
No 233
>TIGR02955 TMAO_TorT TMAO reductase system periplasmic protein TorT. Members of this family are the periplasmic protein TorT which, together with the the TorS/TorR histidine kinase/response regulator system, regulates expression of the torCAD operon for trimethylamine N-oxide reductase (TMAO reductase). It appears to bind an inducer for TMAO reductase, and shows homology to a periplasmic D-ribose binding protein.
Probab=26.38 E-value=4.8e+02 Score=23.49 Aligned_cols=32 Identities=13% Similarity=0.071 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHcCCCEEEEEeCCchH-HHHHhH
Q 018199 93 HAIDITREAIKEGADAVIAVGGDGTL-HEVVNG 124 (359)
Q Consensus 93 ~a~~~~~~~~~~~~d~ivv~GGDGTv-~evlng 124 (359)
...+..+.+...++|.|++.+.|.+. .+.+..
T Consensus 45 ~~~~~i~~l~~~~vDgiIi~~~~~~~~~~~l~~ 77 (295)
T TIGR02955 45 KQLAQIEQCKSWGADAILLGTVSPEALNHDLAQ 77 (295)
T ss_pred HHHHHHHHHHHcCCCEEEEecCChhhhhHHHHH
Confidence 34456666777899999998876432 344443
No 234
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=26.28 E-value=1.2e+02 Score=26.51 Aligned_cols=46 Identities=33% Similarity=0.470 Sum_probs=29.7
Q ss_pred HHHHHHHHHHcCCCEEEEEeCCchHHHHHhHhHhCCccccccccccCCcceEEEeeCcC
Q 018199 94 AIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGT 152 (359)
Q Consensus 94 a~~~~~~~~~~~~d~ivv~GGDGTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~GT 152 (359)
|+++.+++...+ -.|+.-||-|..-.+..+.... ....+|++|..-
T Consensus 36 a~~lg~~la~~g-~~V~tGG~~GiMea~~~gA~~~------------gg~~vGi~p~~~ 81 (205)
T COG1611 36 ARELGRELAKRG-LLVITGGGPGVMEAVARGALEA------------GGLVVGILPGLL 81 (205)
T ss_pred HHHHHHHHHhCC-cEEEeCCchhhhhHHHHHHHHc------------CCeEEEecCCCc
Confidence 445556655555 4555556777777777777643 357899998653
No 235
>KOG2440 consensus Pyrophosphate-dependent phosphofructo-1-kinase [Carbohydrate transport and metabolism]
Probab=25.97 E-value=1.2e+02 Score=31.46 Aligned_cols=47 Identities=21% Similarity=0.294 Sum_probs=28.3
Q ss_pred ccceEEEecCCchH----HHHHHHHHHHcCCCEEEEEeCCch-------HHHHHhHhHh
Q 018199 80 DCNICESLTSGPSH----AIDITREAIKEGADAVIAVGGDGT-------LHEVVNGFFS 127 (359)
Q Consensus 80 ~~~~~~~~t~~~~~----a~~~~~~~~~~~~d~ivv~GGDGT-------v~evlngl~~ 127 (359)
+.++. +.|+.+.+ ..+........+.+.|+|+|||+| ..+|-...++
T Consensus 203 ~aD~i-~~pe~~~~~~~q~~~~l~~~r~~Gln~viVigG~~~~~ga~i~ae~vk~~~~k 260 (666)
T KOG2440|consen 203 GADTI-FIPERPGEDPEQLCEILDSIRKRGLNIVIVIGGAIDNTGAPIIAEEVKERKLK 260 (666)
T ss_pred CCCEE-EecCCCCCCHHHHHHHHHHHHhCCCCEEEEEecccCCCCCcccHHHHHHhhhh
Confidence 34543 34444443 344444444567999999999997 3555555543
No 236
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=25.96 E-value=3.5e+02 Score=21.71 Aligned_cols=71 Identities=13% Similarity=0.084 Sum_probs=44.1
Q ss_pred EEEEEcCCCCCCchhhhHHHHH-HHHHhccccccceEEEecCCchHHHHHHHHHHHcCCCEEEEEeCCchHHHHHhHhHh
Q 018199 49 LVFVVNPRGASGRTGKEWKKLL-PYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFS 127 (359)
Q Consensus 49 ~~iiiNP~SG~g~~~~~~~~~~-~~l~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTv~evlngl~~ 127 (359)
-.++.|+.. .++ +.-.++. ..|+.. + ++++.+..-...++.++.+.+++.|.|++++=|+|--+.+..+++
T Consensus 4 ~v~~a~~g~-D~H--d~g~~iv~~~l~~~---G--feVi~lg~~~s~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~ 75 (132)
T TIGR00640 4 RILVAKMGQ-DGH--DRGAKVIATAYADL---G--FDVDVGPLFQTPEEIARQAVEADVHVVGVSSLAGGHLTLVPALRK 75 (132)
T ss_pred EEEEEeeCC-Ccc--HHHHHHHHHHHHhC---C--cEEEECCCCCCHHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHH
Confidence 456677764 222 2223443 344432 2 444555544456677777778899999999999977776666654
No 237
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=25.76 E-value=3.7e+02 Score=23.84 Aligned_cols=47 Identities=15% Similarity=0.072 Sum_probs=29.7
Q ss_pred ccceEEEecCC-chHHHHHHHHHHHcCCCEEEEEeCC-chHHHHHhHhH
Q 018199 80 DCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGD-GTLHEVVNGFF 126 (359)
Q Consensus 80 ~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGD-GTv~evlngl~ 126 (359)
++++....+.. +....+..+.+...+.|.|++...| ....+.++.+.
T Consensus 29 G~~~~~~~~~~d~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~i~~~~ 77 (272)
T cd06313 29 GVDVTWYGGALDAVKQVAAIENMASQGWDFIAVDPLGIGTLTEAVQKAI 77 (272)
T ss_pred CCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCChHHhHHHHHHHH
Confidence 34554444442 2334456667777889999998766 45677777664
No 238
>PRK05312 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=25.45 E-value=1.1e+02 Score=28.94 Aligned_cols=62 Identities=21% Similarity=0.256 Sum_probs=33.8
Q ss_pred CCcEEEEEcCCCCCCch--hhhHHHHHHHHHhccccccceEEEecCCchHHHHHHHHHHHcCCCEEEEE
Q 018199 46 RRDLVFVVNPRGASGRT--GKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAV 112 (359)
Q Consensus 46 ~~~~~iiiNP~SG~g~~--~~~~~~~~~~l~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~ 112 (359)
||=...=+||++|.+.- .+..+-+.|.+++....++++ .+|-.+..+-.+....+||.||+.
T Consensus 208 PrIaV~GLNPHAGE~G~~G~EE~~iI~PAI~~~~~~Gi~v-----~GP~paDt~F~~~~~~~~D~vvaM 271 (336)
T PRK05312 208 PRLAVAGLNPHAGEGGALGREDIDIIAPAIEQLRAEGIDA-----RGPLPADTMFHAAARATYDAAICM 271 (336)
T ss_pred CCEEEEeeCCCCCCCCCCcHHHHHHHHHHHHHHHHCCCCc-----cCCCCchhhcccccccCCCEEEEc
Confidence 44444558999986433 222334668777643333332 233333333344445679999864
No 239
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=25.34 E-value=3.2e+02 Score=21.63 Aligned_cols=38 Identities=34% Similarity=0.441 Sum_probs=23.2
Q ss_pred ecCCchHHHHHHHHHHHcCCCEEEEEeCCc-----hHHHHHhHh
Q 018199 87 LTSGPSHAIDITREAIKEGADAVIAVGGDG-----TLHEVVNGF 125 (359)
Q Consensus 87 ~t~~~~~a~~~~~~~~~~~~d~ivv~GGDG-----Tv~evlngl 125 (359)
..+..+...+..+++. +++|.||..||=| .+.+++..+
T Consensus 40 v~Dd~~~I~~~l~~~~-~~~dliittGG~g~g~~D~t~~~l~~~ 82 (135)
T smart00852 40 VPDDKEAIKEALREAL-ERADLVITTGGTGPGPDDVTPEAVAEA 82 (135)
T ss_pred eCCCHHHHHHHHHHHH-hCCCEEEEcCCCCCCCCcCcHHHHHHH
Confidence 3445555555555554 4699999999855 334555444
No 240
>TIGR01465 cobM_cbiF precorrin-4 C11-methyltransferase. This model represents precorrin-4 C11-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-3B C17-methyltransferase, EC 2.1.1.131). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products.
Probab=25.30 E-value=1.9e+02 Score=25.26 Aligned_cols=62 Identities=19% Similarity=0.158 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHcCCCEEEEEeCCchHHHHHhHhHhCCccccccccccCCcceEEEeeCc-ChhhhhhhcCCC
Q 018199 93 HAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLG-TGSDFARTFGWR 163 (359)
Q Consensus 93 ~a~~~~~~~~~~~~d~ivv~GGDGTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~G-TgN~~Ar~lg~~ 163 (359)
+..+.+.+...++-++++++.||=.+......++..- ....+++=++|.= +.+..+..+|+|
T Consensus 59 ~~~~~i~~~~~~g~~V~~L~~GDP~~~~~~~~l~~~~---------~~~g~~veviPGiSS~~aa~a~~g~~ 121 (229)
T TIGR01465 59 EIVDIMSDAHREGKLVVRLHTGDPSIYGAIAEQMQLL---------EALGIPYEVVPGVSSFFAAAAALGAE 121 (229)
T ss_pred HHHHHHHHHHHCCCeEEEEeCcCccccccHHHHHHHH---------HHCCCCEEEECChhHHHHHHHHcCCC
Confidence 3444454545566788999999976655444433211 1234689999985 455555667776
No 241
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=25.19 E-value=4.7e+02 Score=22.90 Aligned_cols=77 Identities=6% Similarity=0.140 Sum_probs=42.0
Q ss_pred CCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEE--EecCCchHHHHHHHHHHHcCCCEEEEEeCCchHHHHHh
Q 018199 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICE--SLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVN 123 (359)
Q Consensus 46 ~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~--~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTv~evln 123 (359)
.+++.+|..... .+ ....+-+...+.+. +..+.. .......+....++++...+.|+|++++.+.....+++
T Consensus 136 ~~~v~iv~~~~~-~~--~~~~~~~~~~~~~~---g~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~ 209 (299)
T cd04509 136 WKKVAILYDDDS-YG--RGLLEAFKAAFKKK---GGTVVGEEYYPLGTTDFTSLLQKLKAAKPDVIVLCGSGEDAATILK 209 (299)
T ss_pred CcEEEEEecCch-HH--HHHHHHHHHHHHHc---CCEEEEEecCCCCCccHHHHHHHHHhcCCCEEEEcccchHHHHHHH
Confidence 467887776543 22 12222233444432 122221 11222234556666666566788888776688888888
Q ss_pred HhHhC
Q 018199 124 GFFSA 128 (359)
Q Consensus 124 gl~~~ 128 (359)
.+.+.
T Consensus 210 ~~~~~ 214 (299)
T cd04509 210 QAAEA 214 (299)
T ss_pred HHHHc
Confidence 87654
No 242
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=25.13 E-value=1.4e+02 Score=26.21 Aligned_cols=53 Identities=17% Similarity=0.221 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHcCCCEEEEEeCCchHHHHHhHhHhCCccccccccccCCcceEEEeeCcC
Q 018199 92 SHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGT 152 (359)
Q Consensus 92 ~~a~~~~~~~~~~~~d~ivv~GGDGTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~GT 152 (359)
++..++++++...+.|.|++-|-||.-.+-+..++..- ....++|+-+.|...
T Consensus 11 e~~~~ia~~v~~~gtDaI~VGGS~gvt~~~~~~~v~~i--------k~~~~lPvilfp~~~ 63 (205)
T TIGR01769 11 DEIEKIAKNAKDAGTDAIMVGGSLGIVESNLDQTVKKI--------KKITNLPVILFPGNV 63 (205)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCcCCCCHHHHHHHHHHH--------HhhcCCCEEEECCCc
Confidence 55666777877888999999999986544444443321 112578999988654
No 243
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=25.11 E-value=5.5e+02 Score=23.68 Aligned_cols=79 Identities=10% Similarity=0.096 Sum_probs=45.1
Q ss_pred CCCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceE--EEecCCchHHHHHHHHHHHcCCCEEEEEeCCchHHHHH
Q 018199 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNIC--ESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVV 122 (359)
Q Consensus 45 ~~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~--~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTv~evl 122 (359)
..+++.+|+.....-++ ...+.+...+++. ++++. ........+....+.++...+.|+|++.+..+....++
T Consensus 135 ~~~~v~~l~~~~~~~g~--~~~~~~~~~~~~~---g~~v~~~~~~~~~~~d~~~~v~~i~~~~~d~vi~~~~~~~~~~~~ 209 (344)
T cd06348 135 GIKRVAVFYAQDDAFSV--SETEIFQKALRDQ---GLNLVTVQTFQTGDTDFQAQITAVLNSKPDLIVISALAADGGNLV 209 (344)
T ss_pred CCeEEEEEEeCCchHHH--HHHHHHHHHHHHc---CCEEEEEEeeCCCCCCHHHHHHHHHhcCCCEEEECCcchhHHHHH
Confidence 45788888743321121 2233344455543 22222 12222345667777888788899988887666667788
Q ss_pred hHhHhC
Q 018199 123 NGFFSA 128 (359)
Q Consensus 123 ngl~~~ 128 (359)
+.+.+.
T Consensus 210 ~~~~~~ 215 (344)
T cd06348 210 RQLREL 215 (344)
T ss_pred HHHHHc
Confidence 877543
No 244
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=24.86 E-value=4.6e+02 Score=22.78 Aligned_cols=46 Identities=11% Similarity=0.175 Sum_probs=27.4
Q ss_pred ccceEEEecCC-chHHHHHHHHHHHcCCCEEEEEeCCchHHHHHhHhH
Q 018199 80 DCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFF 126 (359)
Q Consensus 80 ~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGTv~evlngl~ 126 (359)
++.+....+.. +....+..+.+...++|.|++.+.|..- ..++.+.
T Consensus 29 g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-~~~~~l~ 75 (265)
T cd06299 29 GYSTIIGNSDENPETENRYLDNLLSQRVDGIIVVPHEQSA-EQLEDLL 75 (265)
T ss_pred CCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCh-HHHHHHH
Confidence 34554444432 2333345566667789999999887653 4455553
No 245
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=24.82 E-value=2.1e+02 Score=27.29 Aligned_cols=66 Identities=20% Similarity=0.226 Sum_probs=34.3
Q ss_pred HHHHHHHHHHc---CCCEEEEEeCCchHHHHHhHh---HhCCccccc---cccccCCcceEEEeeC--cChhhhhhhc
Q 018199 94 AIDITREAIKE---GADAVIAVGGDGTLHEVVNGF---FSAGKLVTN---HNRESAHSTALGLIPL--GTGSDFARTF 160 (359)
Q Consensus 94 a~~~~~~~~~~---~~d~ivv~GGDGTv~evlngl---~~~~~~~~~---~~~~~~~~~~lgiiP~--GTgN~~Ar~l 160 (359)
..+.++.+... ++|.||++|| |++-++.-.+ +..+....+ .+......+|+..||. |||--..+.-
T Consensus 67 v~~~~~~~~~~~~~~~D~IIaiGG-GS~iD~AKaia~~~~~~~~~~~~~~~~~~~~~~~PlIaVPTTaGTGSE~t~~a 143 (347)
T cd08184 67 IDALTAQVKSFDGKLPCAIVGIGG-GSTLDVAKAVSNMLTNPGSAEDYQGWDLVKNPAVYKIGIPTLSGTGAEASRTA 143 (347)
T ss_pred HHHHHHHHHhhCCCCCCEEEEeCC-cHHHHHHHHHHHHHhCCCCHHHhcccccccCCCCcEEEEeCCCccccccCCcE
Confidence 34444444444 7999999999 6665555443 221100000 0000123468999996 7765554443
No 246
>PRK05990 precorrin-2 C(20)-methyltransferase; Reviewed
Probab=24.82 E-value=2.1e+02 Score=25.51 Aligned_cols=56 Identities=14% Similarity=0.073 Sum_probs=37.3
Q ss_pred HHHHHHcCCCEEEEEeCCchHHHHHhHhHhCCccccccccccCCcceEEEeeC-cChhhhhhhcCCC
Q 018199 98 TREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPL-GTGSDFARTFGWR 163 (359)
Q Consensus 98 ~~~~~~~~~d~ivv~GGDGTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~-GTgN~~Ar~lg~~ 163 (359)
+.+...++-+++++.+||=++..-...++.. ....+++=+||. -|.+..|..+|+|
T Consensus 91 i~~~~~~G~~Vv~L~~GDP~iyst~~~l~~~----------l~~~i~~evIPGISS~~aaaA~~gip 147 (241)
T PRK05990 91 VAAHLDAGRDVAVICEGDPFFYGSYMYLHDR----------LAPRYETEVIPGVCSMLGCWSVLGAP 147 (241)
T ss_pred HHHHHHCCCeEEEEeCCCcHHHhHHHHHHHH----------HhcCCCEEEECcHHHHHHHHHHhCCC
Confidence 3444556778999999997776633333211 012467889998 5668888888887
No 247
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=24.77 E-value=5.3e+02 Score=23.41 Aligned_cols=63 Identities=16% Similarity=0.299 Sum_probs=35.2
Q ss_pred hhHHHHHHHHHhccc-cccceEEEecCCc-hHHHHHHHHHHHcCCCEEEEEeCCch-HHHHHhHhH
Q 018199 64 KEWKKLLPYLRSRLS-VDCNICESLTSGP-SHAIDITREAIKEGADAVIAVGGDGT-LHEVVNGFF 126 (359)
Q Consensus 64 ~~~~~~~~~l~~~~~-~~~~~~~~~t~~~-~~a~~~~~~~~~~~~d~ivv~GGDGT-v~evlngl~ 126 (359)
..|..+...+++.+. .++++.+..+... ..-.+..+.+...++|.|++++-|.. +...+..+.
T Consensus 11 ~~~~~~~~~i~~~a~~~g~~v~~~~~~~~~~~q~~~i~~l~~~~vDgIIi~~~~~~~~~~~l~~~~ 76 (302)
T TIGR02634 11 ERWQKDRDIFVAAAESLGAKVFVQSANGNEAKQISQIENLIARGVDVLVIIPQNGQVLSNAVQEAK 76 (302)
T ss_pred hhHHHHHHHHHHHHHhcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHH
Confidence 345555544444332 2344443333321 12234556667788999999998865 466666654
No 248
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=24.66 E-value=4.8e+02 Score=22.87 Aligned_cols=46 Identities=17% Similarity=0.250 Sum_probs=26.7
Q ss_pred ccceEEEecCCch-HHHHHHHHHHHcCCCEEEEEeCCchHHHHHhHh
Q 018199 80 DCNICESLTSGPS-HAIDITREAIKEGADAVIAVGGDGTLHEVVNGF 125 (359)
Q Consensus 80 ~~~~~~~~t~~~~-~a~~~~~~~~~~~~d~ivv~GGDGTv~evlngl 125 (359)
++++.+..+.... ...+..+.+...+.|.|++.+++.....+++.+
T Consensus 29 g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~~~~~~~~~~~ 75 (269)
T cd06281 29 GYSLLIANSLNDPERELEILRSFEQRRMDGIIIAPGDERDPELVDAL 75 (269)
T ss_pred CCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHH
Confidence 3454444444322 234555666677899999998764334455444
No 249
>PRK05569 flavodoxin; Provisional
Probab=24.39 E-value=3.4e+02 Score=21.52 Aligned_cols=68 Identities=9% Similarity=0.046 Sum_probs=37.1
Q ss_pred CCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEecCCchHHHHHHHHHHHcCCCEEEEEeC---Cc-----h
Q 018199 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGG---DG-----T 117 (359)
Q Consensus 46 ~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GG---DG-----T 117 (359)
|.+++||+= |..|...+..+.+...+.+. +.++.++...... .. ...++|.|+++-. .| .
T Consensus 1 m~ki~iiY~--S~tGnT~~iA~~i~~~~~~~---g~~v~~~~~~~~~-~~------~~~~~d~iilgsPty~~~~~~~~~ 68 (141)
T PRK05569 1 MKKVSIIYW--SCGGNVEVLANTIADGAKEA---GAEVTIKHVADAK-VE------DVLEADAVAFGSPSMDNNNIEQEE 68 (141)
T ss_pred CCeEEEEEE--CCCCHHHHHHHHHHHHHHhC---CCeEEEEECCcCC-HH------HHhhCCEEEEECCCcCCCcCChHH
Confidence 357788884 44667777777777666543 2334333322211 11 1246888887642 22 3
Q ss_pred HHHHHhHh
Q 018199 118 LHEVVNGF 125 (359)
Q Consensus 118 v~evlngl 125 (359)
+..+++.+
T Consensus 69 ~~~~~~~l 76 (141)
T PRK05569 69 MAPFLDQF 76 (141)
T ss_pred HHHHHHHh
Confidence 56666655
No 250
>PRK04155 chaperone protein HchA; Provisional
Probab=24.04 E-value=5.8e+02 Score=23.59 Aligned_cols=17 Identities=35% Similarity=0.493 Sum_probs=14.0
Q ss_pred HcCCCEEEEEeCCchHH
Q 018199 103 KEGADAVIAVGGDGTLH 119 (359)
Q Consensus 103 ~~~~d~ivv~GGDGTv~ 119 (359)
.+.||+|++.||=|.+.
T Consensus 145 ~~dYDaV~iPGG~g~~~ 161 (287)
T PRK04155 145 DSDYAAVFIPGGHGALI 161 (287)
T ss_pred cccccEEEECCCCchHH
Confidence 35899999999988744
No 251
>PRK03604 moaC bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; Provisional
Probab=24.04 E-value=3e+02 Score=25.81 Aligned_cols=31 Identities=26% Similarity=0.438 Sum_probs=20.5
Q ss_pred EecCCchHHHHHHHHHHHcCCCEEEEEeCCc
Q 018199 86 SLTSGPSHAIDITREAIKEGADAVIAVGGDG 116 (359)
Q Consensus 86 ~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDG 116 (359)
+..+.+....+..+++..+++|+|+..||=|
T Consensus 196 iVpDD~~~I~~al~~a~~~~~DlIITTGGtg 226 (312)
T PRK03604 196 IIPDEPAEIAAAVAAWIAEGYALIITTGGTG 226 (312)
T ss_pred EcCCCHHHHHHHHHHhhhCCCCEEEECCCCC
Confidence 3445555555555555456799999999954
No 252
>cd01617 DCX Ubiquitin-like domain of DCX. DCX The ubiquitin-like DCX domain is present in tandem within the N-terminal half of the doublecortin protein. Doublecortin is expressed in migrating neurons. Mutations in the gene encoding doublecortin cause lissencephaly in males and 'double-cortex syndrome' in females.
Probab=23.86 E-value=2.8e+02 Score=19.97 Aligned_cols=63 Identities=21% Similarity=0.293 Sum_probs=35.8
Q ss_pred CCcEEEEEcCCCCCCchhhhHHHHHHHHHhcccc-ccceEEEecCCchHHHHHHHHHHHcCCCEEEEEeCC
Q 018199 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSV-DCNICESLTSGPSHAIDITREAIKEGADAVIAVGGD 115 (359)
Q Consensus 46 ~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~-~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGD 115 (359)
.+.+.+++|++. -+.|+.++..|.+.+.. ...+.-+.|....+-.....++ ++-...|++|.+
T Consensus 13 ~~g~~~~i~~~~-----~~sfd~lL~~lt~~l~l~~~~Vr~lyt~~g~~~v~~~~~l--~~g~~yVa~g~e 76 (80)
T cd01617 13 FKGVRLLVNRRR-----FKSFDALLDDLTEKVQLDPGAVRKLYTLDGGHRVSLLDEL--EDGGVYVASGRE 76 (80)
T ss_pred CCCEEEEEChhh-----hCCHHHHHHHHHHHhCCCCCcEEEEEcCCCCeEeccHHHh--cCCCEEEEECCC
Confidence 456778888863 24477777777765532 2334444554443443333443 445677888865
No 253
>PF02016 Peptidase_S66: LD-carboxypeptidase; InterPro: IPR003507 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature is found in the Escherichia coli microcin C7 self-immunity protein mccF and in muramoyltetrapeptide carboxypeptidase (3.4.17.13 from EC, LD-carboxypeptidase A). LD-carboxypeptidase A belongs to MEROPS peptidase family S66 (clan SS). The entry also contains uncharacterised proteins including hypothetical proteins from various bacteria archaea.; PDB: 1ZRS_A 1ZL0_B 2AUM_B 2AUN_B 3TLG_A 3TLC_A 3TLZ_B 3TLY_B 3TLE_A 3TLB_B ....
Probab=23.73 E-value=75 Score=29.29 Aligned_cols=63 Identities=14% Similarity=0.150 Sum_probs=27.4
Q ss_pred EEcCC-CCCCchhhhHHHHHHHHHhccccccceEEEecCC------chHHHHHHHH----HHHcCCCEEEE-EeCCchHH
Q 018199 52 VVNPR-GASGRTGKEWKKLLPYLRSRLSVDCNICESLTSG------PSHAIDITRE----AIKEGADAVIA-VGGDGTLH 119 (359)
Q Consensus 52 iiNP~-SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t~~------~~~a~~~~~~----~~~~~~d~ivv-~GGDGTv~ 119 (359)
|+.|. +. -..+.+++-...|++. ++++.+..+.. .+..++.+++ +...+.|+|++ -||+|+..
T Consensus 3 ivaPS~~~--~~~~~l~~~~~~L~~~---G~~v~~~~~~~~~~~~~ags~~~Ra~dL~~a~~d~~i~aI~~~rGGyg~~r 77 (284)
T PF02016_consen 3 IVAPSLSP--IDPERLERGIKRLESW---GFKVVVGPHVFKRDGYLAGSDEERAEDLNEAFADPEIDAIWCARGGYGANR 77 (284)
T ss_dssp EE-SSHHH--HCHHHHHHHHHHHHHT---TEEEEE-TTTTS-BTTBSS-HHHHHHHHHHHHHSTTEEEEEES--SS-GGG
T ss_pred EEeCCCCc--cCHHHHHHHHHHHHhC---CCEEEECCcccccCCCcCCCHHHHHHHHHHHhcCCCCCEEEEeeccccHHH
Confidence 56776 21 1123455556667653 34443322111 1233333333 33455677775 49999863
No 254
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=23.57 E-value=6.2e+02 Score=23.74 Aligned_cols=77 Identities=13% Similarity=0.099 Sum_probs=44.9
Q ss_pred CCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceE--EEecCCchHHHHHHHHHHHcCCCEEEEEeCCchHHHHHh
Q 018199 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNIC--ESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVN 123 (359)
Q Consensus 46 ~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~--~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTv~evln 123 (359)
.+++.+|++-.. -++. ..+.+...+++. +.++. ........+....+.++...++|+|++.+-......++.
T Consensus 140 ~~kvaiv~~~~~-~g~~--~~~~~~~~~~~~---G~~vv~~~~~~~~~~D~~~~v~~i~~~~pd~V~~~~~~~~~~~~~~ 213 (351)
T cd06334 140 GKKIALVYHDSP-FGKE--PIEALKALAEKL---GFEVVLEPVPPPGPNDQKAQWLQIRRSGPDYVILWGWGVMNPVAIK 213 (351)
T ss_pred CCeEEEEeCCCc-cchh--hHHHHHHHHHHc---CCeeeeeccCCCCcccHHHHHHHHHHcCCCEEEEecccchHHHHHH
Confidence 578888776432 2322 223334445543 22322 122333356667777777788999988877667777787
Q ss_pred HhHhC
Q 018199 124 GFFSA 128 (359)
Q Consensus 124 gl~~~ 128 (359)
.+.+.
T Consensus 214 ~~~~~ 218 (351)
T cd06334 214 EAKRV 218 (351)
T ss_pred HHHHc
Confidence 77543
No 255
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=23.55 E-value=4.7e+02 Score=22.40 Aligned_cols=44 Identities=7% Similarity=0.046 Sum_probs=28.7
Q ss_pred cceEEEecCC-chHHHHHHHHHHHcCCCEEEEEeCCchHHHHHhHh
Q 018199 81 CNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGF 125 (359)
Q Consensus 81 ~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGTv~evlngl 125 (359)
+++.+..... +....+.++++...++|.|++.+.|.+... +..+
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iii~~~~~~~~~-~~~~ 74 (264)
T cd06267 30 YSVLLCNSDEDPEKEREALELLLSRRVDGIILAPSRLDDEL-LEEL 74 (264)
T ss_pred CEEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEecCCcchHH-HHHH
Confidence 4444433332 223456677777789999999999987665 5444
No 256
>PLN02335 anthranilate synthase
Probab=23.28 E-value=2.5e+02 Score=24.76 Aligned_cols=65 Identities=15% Similarity=0.212 Sum_probs=38.8
Q ss_pred CCCCCCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEecCCchHHHHHHHHHHHcCCCEEEEEeCCchHHHH
Q 018199 42 SSSRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEV 121 (359)
Q Consensus 42 ~~~~~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTv~ev 121 (359)
++...++++||=|--|= -..+...|++. ++.+.++..+. ..+.++ ....+|.||+.||-|..++.
T Consensus 14 ~~~~~~~ilviD~~dsf-------t~~i~~~L~~~---g~~~~v~~~~~-~~~~~~----~~~~~d~iVisgGPg~p~d~ 78 (222)
T PLN02335 14 SSKQNGPIIVIDNYDSF-------TYNLCQYMGEL---GCHFEVYRNDE-LTVEEL----KRKNPRGVLISPGPGTPQDS 78 (222)
T ss_pred ccCccCcEEEEECCCCH-------HHHHHHHHHHC---CCcEEEEECCC-CCHHHH----HhcCCCEEEEcCCCCChhhc
Confidence 45667899999775431 12356667664 34444443321 122222 23468999999999999874
No 257
>PRK07168 bifunctional uroporphyrinogen-III methyltransferase/uroporphyrinogen-III synthase; Reviewed
Probab=23.14 E-value=2.4e+02 Score=28.26 Aligned_cols=52 Identities=21% Similarity=0.209 Sum_probs=35.6
Q ss_pred HHHHcCCCEEEEEeCCchHH----HHHhHhHhCCccccccccccCCcceEEEeeC-cChhhhhhhcCCCC
Q 018199 100 EAIKEGADAVIAVGGDGTLH----EVVNGFFSAGKLVTNHNRESAHSTALGLIPL-GTGSDFARTFGWRN 164 (359)
Q Consensus 100 ~~~~~~~d~ivv~GGDGTv~----evlngl~~~~~~~~~~~~~~~~~~~lgiiP~-GTgN~~Ar~lg~~~ 164 (359)
+...++-++++..|||=.+. +.+..|. ...+++=++|. -|.+..+..+|+|.
T Consensus 75 ~~a~~Gk~VvrL~~GDP~vfg~~~ee~~~l~-------------~~gi~~eVVPGISS~~aaaA~aGiPl 131 (474)
T PRK07168 75 QFAKEGKIVVRLKGGDPSIFGRVGEEAETLA-------------AANIPYEIVPGITSSIAASSYAGIPL 131 (474)
T ss_pred HHHhCCCEEEEEeCCCchHHhhHHHHHHHHH-------------hCCCCEEEECChhHHHHHHHHcCCCC
Confidence 33445667888899995554 5555553 23578889998 56777777788874
No 258
>PF10580 Neuromodulin_N: Gap junction protein N-terminal region; InterPro: IPR018947 Neuromodulin is a component of the motile growth cones. It is membrane protein whose expression is widely correlated with successful axon elongation []. It is a crucial component of an effective regeneration response in the nervous system []. Although its function is uncertain, the N-terminal region is well conserved and contains both a calmodulin binding domain, and sites for acylation, membrane attachment and protein kinase C phosphorylation. Structure predictions suggest that the C-terminal region may exist as an extended, negatively-charged rod with some similarity to the side arms of neurofilaments, indicating that the biological role of neuromodulin may depend on its ability to form a dynamic membrane-cytoplasm-calmodulin complex []. This entry represents the neuromodulin N-terminal domain.
Probab=22.80 E-value=39 Score=19.68 Aligned_cols=6 Identities=33% Similarity=0.933 Sum_probs=2.8
Q ss_pred Cceeee
Q 018199 1 MICLSQ 6 (359)
Q Consensus 1 ~~~~~~ 6 (359)
|+||.+
T Consensus 1 mlcc~r 6 (32)
T PF10580_consen 1 MLCCIR 6 (32)
T ss_pred Ceeeee
Confidence 445444
No 259
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=22.80 E-value=6.2e+02 Score=23.49 Aligned_cols=77 Identities=12% Similarity=0.231 Sum_probs=41.5
Q ss_pred CCCcEEEEEcCCCCCCchhhhHHHHHHHHHhccc-cccceEEEecCC-chHHHHHHHHHHHcCCCEEEEEeCCch-HHHH
Q 018199 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLS-VDCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGT-LHEV 121 (359)
Q Consensus 45 ~~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~-~~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGT-v~ev 121 (359)
...++.+++ |.-. ...|.++...+.+.+. .++.+.+..+.. +....+..+.+...++|.|++.+.+.. ..+.
T Consensus 24 ~~~~Ig~i~-~~~~----~~f~~~~~~gi~~~a~~~g~~l~i~~~~~~~~~~~~~i~~l~~~~vDGiIi~~~~~~~~~~~ 98 (330)
T PRK10355 24 KEVKIGMAI-DDLR----LERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNV 98 (330)
T ss_pred CCceEEEEe-cCCC----chHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhHHHH
Confidence 345556555 4322 2345555444443322 234544444432 223445566667779999999987754 4566
Q ss_pred HhHhH
Q 018199 122 VNGFF 126 (359)
Q Consensus 122 lngl~ 126 (359)
++.+.
T Consensus 99 l~~~~ 103 (330)
T PRK10355 99 IKEAK 103 (330)
T ss_pred HHHHH
Confidence 66554
No 260
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=22.70 E-value=2.3e+02 Score=25.39 Aligned_cols=45 Identities=27% Similarity=0.331 Sum_probs=32.7
Q ss_pred HHHHHcCCCEEEEEeCCchHHHHHhHhHhCCccccccccccCCcceEEEeeCcC
Q 018199 99 REAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLGT 152 (359)
Q Consensus 99 ~~~~~~~~d~ivv~GGDGTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~GT 152 (359)
++....+.|+|++-|-||.-.+-+..++.+- ...++|+.+.|...
T Consensus 26 ~~~~~~gtdai~vGGS~~vt~~~~~~~v~~i---------k~~~lPvilfp~~~ 70 (232)
T PRK04169 26 EAICESGTDAIIVGGSDGVTEENVDELVKAI---------KEYDLPVILFPGNI 70 (232)
T ss_pred HHHHhcCCCEEEEcCCCccchHHHHHHHHHH---------hcCCCCEEEeCCCc
Confidence 5566788999999999987766666665432 12568999998765
No 261
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=22.60 E-value=5.1e+02 Score=22.47 Aligned_cols=45 Identities=18% Similarity=0.216 Sum_probs=32.6
Q ss_pred HHHHHHHHHHcCCCEEEEEeCCc-hHHHHHhHhHhCCccccccccccCCcceEEEeeCc
Q 018199 94 AIDITREAIKEGADAVIAVGGDG-TLHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLG 151 (359)
Q Consensus 94 a~~~~~~~~~~~~d~ivv~GGDG-Tv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~G 151 (359)
..+.++++...++|.|++..-|. .+.++++.+.. ..+|+..+=..
T Consensus 44 q~~~i~~~i~~~~d~Iiv~~~~~~~~~~~l~~~~~-------------~gIpvv~~d~~ 89 (257)
T PF13407_consen 44 QIEQIEQAISQGVDGIIVSPVDPDSLAPFLEKAKA-------------AGIPVVTVDSD 89 (257)
T ss_dssp HHHHHHHHHHTTESEEEEESSSTTTTHHHHHHHHH-------------TTSEEEEESST
T ss_pred HHHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHhh-------------cCceEEEEecc
Confidence 34556777788999999998887 46788887753 35777776444
No 262
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=22.50 E-value=4.1e+02 Score=26.98 Aligned_cols=66 Identities=12% Similarity=0.200 Sum_probs=43.0
Q ss_pred CCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEecCCchHHHHHHHHHHHcCCCEEEEEeCCchHHHHHhHh
Q 018199 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGF 125 (359)
Q Consensus 46 ~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTv~evlngl 125 (359)
..++.||--|.-- . .++.+...| ++++..+.-....++...++++..+++++|| ||+++.+.+..+
T Consensus 97 ~~~ia~vg~~~~~--~---~~~~~~~ll------~~~i~~~~~~~~~e~~~~~~~l~~~G~~~vi---G~~~~~~~A~~~ 162 (526)
T TIGR02329 97 ASSIGVVTHQDTP--P---ALRRFQAAF------NLDIVQRSYVTEEDARSCVNDLRARGIGAVV---GAGLITDLAEQA 162 (526)
T ss_pred CCcEEEEecCccc--H---HHHHHHHHh------CCceEEEEecCHHHHHHHHHHHHHCCCCEEE---CChHHHHHHHHc
Confidence 4577777666532 1 122222222 2344455566778899999999889999888 888888887654
No 263
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=22.27 E-value=5.2e+02 Score=22.41 Aligned_cols=46 Identities=15% Similarity=0.197 Sum_probs=26.1
Q ss_pred ccceEEEecCC-chHHHHHHHHHHHcCCCEEEEEeCCch-HHHHHhHh
Q 018199 80 DCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGT-LHEVVNGF 125 (359)
Q Consensus 80 ~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGT-v~evlngl 125 (359)
++++.+..+.+ +....+..+++...++|.|++.+-+.. ..+.+..+
T Consensus 29 g~~v~~~~~~~~~~~~~~~~~~~~~~~~dgii~~~~~~~~~~~~l~~l 76 (268)
T cd06323 29 GYELTVLDAQNDAAKQLNDIEDLITRGVDAIIINPTDSDAVVPAVKAA 76 (268)
T ss_pred CceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHH
Confidence 34554444432 233445666667778999888764433 23555555
No 264
>COG1995 PdxA Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=22.25 E-value=1.1e+02 Score=28.80 Aligned_cols=64 Identities=25% Similarity=0.274 Sum_probs=33.3
Q ss_pred CcEEEEEcCCCCCCchh--hhHHHHHHHHHhccccccceEEEecCCchHHHHHHHHHHHcCCCEEEEEeCC
Q 018199 47 RDLVFVVNPRGASGRTG--KEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGD 115 (359)
Q Consensus 47 ~~~~iiiNP~SG~g~~~--~~~~~~~~~l~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGD 115 (359)
|=...=+||+||-+... +..+.+.|.+++.-..++++ .+|--+..+-.+...+.+|.+++.==|
T Consensus 203 riaVaGLNPHaGE~G~lG~EE~diI~Paie~aR~~Gi~~-----~GPlpADT~F~~~~~~~~DavlaMYHD 268 (332)
T COG1995 203 RIAVAGLNPHAGEGGLLGREEIDIIIPAIEEARAEGIDL-----VGPLPADTLFHPAYLANYDAVLAMYHD 268 (332)
T ss_pred ceEEeccCCCCCcCCCCCchhHHHHHHHHHHHHHhCCcc-----cCCCCcchhhhhhhhccCCEEEEeecc
Confidence 33444589999976442 33445667776542233332 223233333334444557888865433
No 265
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=22.13 E-value=5.3e+02 Score=22.46 Aligned_cols=61 Identities=11% Similarity=0.166 Sum_probs=33.4
Q ss_pred hHHHHHHHHHhccc-cccceEEEecCC-chHHHHHHHHHHHcCCCEEEEEeCCch-HHHHHhHh
Q 018199 65 EWKKLLPYLRSRLS-VDCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGT-LHEVVNGF 125 (359)
Q Consensus 65 ~~~~~~~~l~~~~~-~~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGT-v~evlngl 125 (359)
.|.++...+.+.+. .++++.+..+.. +....+..+++...+.|.|++.+-|.+ ..+.++.+
T Consensus 13 ~~~~~~~~i~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~~ 76 (267)
T cd06322 13 FYIELANAMKEEAKKQKVNLIVSIANQDLNKQLSDVEDFITKKVDAIVLSPVDSKGIRAAIAKA 76 (267)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCChhhhHHHHHHH
Confidence 34444444433322 234554444432 233445666777788999999887654 34555555
No 266
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=21.99 E-value=6.1e+02 Score=23.10 Aligned_cols=76 Identities=12% Similarity=0.185 Sum_probs=37.7
Q ss_pred CCCcEEEEEcCCCCCCchhhhHHHHHHHHHhccc-cccceEEEecCC-chHHHHHHHHHHHcCCCEEEEEeCCchHHHHH
Q 018199 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLS-VDCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGTLHEVV 122 (359)
Q Consensus 45 ~~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~-~~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGTv~evl 122 (359)
+.+.+.+++ |.... ..|.++...+.+.+. .++.+.+..+.. +....+..+.+...+.|.||+.+.+..-.+.+
T Consensus 59 ~~~~Igvi~-~~~~~----~~~~~~~~~i~~~~~~~gy~~~i~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~ 133 (327)
T TIGR02417 59 RSRTIGLVI-PDLEN----YSYARIAKELEQQCREAGYQLLIACSDDNPDQEKVVIENLLARQVDALIVASCMPPEDAYY 133 (327)
T ss_pred CCceEEEEe-CCCCC----ccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCChHHH
Confidence 345677776 43211 223333333333221 234544444432 22233445556667899999988765334555
Q ss_pred hHh
Q 018199 123 NGF 125 (359)
Q Consensus 123 ngl 125 (359)
..+
T Consensus 134 ~~l 136 (327)
T TIGR02417 134 QKL 136 (327)
T ss_pred HHH
Confidence 555
No 267
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=21.99 E-value=2.3e+02 Score=22.95 Aligned_cols=30 Identities=33% Similarity=0.667 Sum_probs=19.1
Q ss_pred ecCCchHHHHHHHHHHHcCCCEEEEEeCCch
Q 018199 87 LTSGPSHAIDITREAIKEGADAVIAVGGDGT 117 (359)
Q Consensus 87 ~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGT 117 (359)
..+..+...+..+++. +++|.||+.||=|.
T Consensus 49 v~Dd~~~i~~~l~~~~-~~~DliIttGG~g~ 78 (144)
T TIGR00177 49 VPDDPEEIREILRKAV-DEADVVLTTGGTGV 78 (144)
T ss_pred cCCCHHHHHHHHHHHH-hCCCEEEECCCCCC
Confidence 3444444455555543 47999999998654
No 268
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=21.93 E-value=4.2e+02 Score=21.70 Aligned_cols=46 Identities=26% Similarity=0.301 Sum_probs=29.9
Q ss_pred ceEEEecCCchHHHHHHHHHHHc-CCCEEEEEe----CCchH-----HHHHhHhHh
Q 018199 82 NICESLTSGPSHAIDITREAIKE-GADAVIAVG----GDGTL-----HEVVNGFFS 127 (359)
Q Consensus 82 ~~~~~~t~~~~~a~~~~~~~~~~-~~d~ivv~G----GDGTv-----~evlngl~~ 127 (359)
++.++...+.-+.--.++++... ++|.||+.| |+-.- +++.++|++
T Consensus 38 ~i~~~~VPGa~ElP~a~~~l~~~~~~Davi~lG~VI~G~T~H~~~v~~~v~~gl~~ 93 (144)
T PF00885_consen 38 NIEVIRVPGAFELPLAAKRLAESGRYDAVIALGCVIRGETDHFEYVANAVSRGLMD 93 (144)
T ss_dssp CEEEEEESSGGGHHHHHHHHHHCSTESEEEEEEEEE--SSTHHHHHHHHHHHHHHH
T ss_pred ceEEEEcCCHHHHHHHHHHHhcccCccEEEEeccccCCCchHHHHHHHHHHHHHHH
Confidence 45556666777776677776654 599999999 33332 456666653
No 269
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=21.86 E-value=1.8e+02 Score=24.45 Aligned_cols=65 Identities=17% Similarity=0.229 Sum_probs=38.4
Q ss_pred CCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEecCCchHHHHHHHHHHHcCCCEEEEEeCCchHHHHHhH
Q 018199 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNG 124 (359)
Q Consensus 46 ~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTv~evlng 124 (359)
.+++.++-.+..-.+ +..+...|. .++..+.-.++.+....+.++..+++|+|| | ++++.+.++.
T Consensus 77 ~~~Iavv~~~~~~~~-----~~~~~~ll~------~~i~~~~~~~~~e~~~~i~~~~~~G~~viV--G-g~~~~~~A~~ 141 (176)
T PF06506_consen 77 GPKIAVVGYPNIIPG-----LESIEELLG------VDIKIYPYDSEEEIEAAIKQAKAEGVDVIV--G-GGVVCRLARK 141 (176)
T ss_dssp TSEEEEEEESS-SCC-----HHHHHHHHT-------EEEEEEESSHHHHHHHHHHHHHTT--EEE--E-SHHHHHHHHH
T ss_pred CCcEEEEecccccHH-----HHHHHHHhC------CceEEEEECCHHHHHHHHHHHHHcCCcEEE--C-CHHHHHHHHH
Confidence 478888887765322 223333332 234445556788899999999888988877 4 4455555543
No 270
>PRK03670 competence damage-inducible protein A; Provisional
Probab=21.73 E-value=3.7e+02 Score=24.33 Aligned_cols=29 Identities=10% Similarity=0.220 Sum_probs=18.8
Q ss_pred ecCCchHHHHHHHHHHHcCCCEEEEEeCC
Q 018199 87 LTSGPSHAIDITREAIKEGADAVIAVGGD 115 (359)
Q Consensus 87 ~t~~~~~a~~~~~~~~~~~~d~ivv~GGD 115 (359)
..+......+..+++..+.+|.|++.||=
T Consensus 42 V~Dd~~~I~~~l~~a~~~~~DlVIttGGl 70 (252)
T PRK03670 42 VGDDVEEIKSVVLEILSRKPEVLVISGGL 70 (252)
T ss_pred cCCCHHHHHHHHHHHhhCCCCEEEECCCc
Confidence 34444555555555545568999999993
No 271
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=21.59 E-value=4.3e+02 Score=23.10 Aligned_cols=44 Identities=27% Similarity=0.323 Sum_probs=25.3
Q ss_pred ceEEEecCC-chHHHHHHHHHHHcCCCEEEEEeCCchHHHHHhHh
Q 018199 82 NICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGF 125 (359)
Q Consensus 82 ~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGTv~evlngl 125 (359)
++....+.+ +..+.+.++++..++.++|+...+..+...++..+
T Consensus 42 ~~~~~d~~~~~~~~~~~~~~l~~~~v~~iig~~~~~~~~~~~~~~ 86 (298)
T cd06268 42 ELVVEDTQGDPEAAAAAARELVDDGVDAVIGPLSSGVALAAAPVA 86 (298)
T ss_pred EEEEecCCCCHHHHHHHHHHHHhCCceEEEcCCcchhHHhhHHHH
Confidence 344444543 44566777777777777776444444555555544
No 272
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=21.59 E-value=4.3e+02 Score=24.40 Aligned_cols=57 Identities=14% Similarity=0.107 Sum_probs=35.6
Q ss_pred ccceEEEecCC--chHHHHHHHHHHHcCCCEEEEEeCCchHHHHHhHhHhCCccccccccccCCcceEEEee
Q 018199 80 DCNICESLTSG--PSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFSAGKLVTNHNRESAHSTALGLIP 149 (359)
Q Consensus 80 ~~~~~~~~t~~--~~~a~~~~~~~~~~~~d~ivv~GGDGTv~evlngl~~~~~~~~~~~~~~~~~~~lgiiP 149 (359)
++++....... ..+..+..+++..+++|.|++.|. ...+.+..+... .++..+.++-
T Consensus 34 ~i~~~~~e~~~~~~~~~~~~~~~~~~~g~dlIi~~g~--~~~~~~~~vA~~-----------yPd~~F~~~d 92 (306)
T PF02608_consen 34 GIEIIYVENVPETDADYEEAIRQLADQGYDLIIGHGF--EYSDALQEVAKE-----------YPDTKFIIID 92 (306)
T ss_dssp TEEEEEEES-S-TCHHHHHHHHHHHHTT-SEEEEESG--GGHHHHHHHHTC------------TTSEEEEES
T ss_pred CceEEEEecCCccHHHHHHHHHHHHHcCCCEEEEccH--HHHHHHHHHHHH-----------CCCCEEEEEe
Confidence 34444444444 678888888988899999998775 345666666532 2456666653
No 273
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=21.47 E-value=1.2e+02 Score=22.28 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=17.2
Q ss_pred EeEEEEEeccCCCCceEEecCCCCCc
Q 018199 318 AHSIEVEDISSGDSIYVQSDGEHLGF 343 (359)
Q Consensus 318 ~~~i~i~~~~~~~~~~~~iDGE~~~~ 343 (359)
...+.++....+.++.+.+||++++.
T Consensus 31 ~~~l~l~a~~~~~~~~W~vdg~~~g~ 56 (89)
T PF06832_consen 31 RQPLVLKAAGGRGPVYWFVDGEPLGT 56 (89)
T ss_pred cceEEEEEeCCCCcEEEEECCEEccc
Confidence 34455554333458999999999954
No 274
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=21.38 E-value=2.6e+02 Score=22.86 Aligned_cols=43 Identities=28% Similarity=0.287 Sum_probs=20.1
Q ss_pred HHHHHHHhccccccceEEEecCCchHHHHHHHHHHHcCCCEEEEEeCCc
Q 018199 68 KLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDG 116 (359)
Q Consensus 68 ~~~~~l~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDG 116 (359)
+....+++. ++++.........++ +....+ ...|+|++.|||=
T Consensus 4 ~~~~~f~~~---g~~v~~l~~~~~~~~-~~~~~i--~~ad~I~~~GG~~ 46 (154)
T PF03575_consen 4 KFRKAFRKL---GFEVDQLDLSDRNDA-DILEAI--READAIFLGGGDT 46 (154)
T ss_dssp HHHHHHHHC---T-EEEECCCTSCGHH-HHHHHH--HHSSEEEE--S-H
T ss_pred HHHHHHHHC---CCEEEEEeccCCChH-HHHHHH--HhCCEEEECCCCH
Confidence 444556653 344444433333333 333332 3589999999994
No 275
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=21.34 E-value=6.2e+02 Score=22.97 Aligned_cols=69 Identities=7% Similarity=0.063 Sum_probs=34.9
Q ss_pred CCCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEecCC-chHHHHHHHHHHHcCCCEEEEEeCCch
Q 018199 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGT 117 (359)
Q Consensus 45 ~~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGT 117 (359)
+.+.+.+|++ .....--...++.+...+.+. ++.+.+..+.. +....+..+.+...++|.|++.+.+..
T Consensus 55 ~~~~Igvi~~-~~~~~~~~~~~~gi~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~ 124 (327)
T PRK10423 55 QTRTIGMLIT-ASTNPFYSELVRGVERSCFER---GYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETH 124 (327)
T ss_pred CCCeEEEEeC-CCCCCcHHHHHHHHHHHHHHc---CCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 3456777764 322211122333344444432 34444434432 222334455566778999999987754
No 276
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=21.34 E-value=6.1e+02 Score=22.89 Aligned_cols=74 Identities=7% Similarity=0.113 Sum_probs=44.6
Q ss_pred CcEEEEEcCCCCCCchhhhHHHHHHHHHhccc-cccceEEEecCCchHHHHHHHHHHHcCCCEEEEEeCCchHHHHHhHh
Q 018199 47 RDLVFVVNPRGASGRTGKEWKKLLPYLRSRLS-VDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGF 125 (359)
Q Consensus 47 ~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~-~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTv~evlngl 125 (359)
+.+.+|+...+. ..|.++...+.+.+. .++.+.+..|.+..+.++..+.+...+.|.||+++-+.. .+-+..+
T Consensus 2 ~~IGvivp~~~n-----pff~~ii~gIe~~a~~~Gy~l~l~~t~~~~~~e~~i~~l~~~~vDGiI~~s~~~~-~~~l~~~ 75 (279)
T PF00532_consen 2 KTIGVIVPDISN-----PFFAEIIRGIEQEAREHGYQLLLCNTGDDEEKEEYIELLLQRRVDGIILASSEND-DEELRRL 75 (279)
T ss_dssp CEEEEEESSSTS-----HHHHHHHHHHHHHHHHTTCEEEEEEETTTHHHHHHHHHHHHTTSSEEEEESSSCT-CHHHHHH
T ss_pred CEEEEEECCCCC-----cHHHHHHHHHHHHHHHcCCEEEEecCCCchHHHHHHHHHHhcCCCEEEEecccCC-hHHHHHH
Confidence 346666655531 234444444433321 245665566776666667777777889999999977766 4555555
Q ss_pred H
Q 018199 126 F 126 (359)
Q Consensus 126 ~ 126 (359)
.
T Consensus 76 ~ 76 (279)
T PF00532_consen 76 I 76 (279)
T ss_dssp H
T ss_pred H
Confidence 4
No 277
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=20.87 E-value=5.8e+02 Score=22.41 Aligned_cols=43 Identities=14% Similarity=0.084 Sum_probs=28.8
Q ss_pred HHHHHHHHcCCCEEEEEeCCch-HHHHHhHhHhCCccccccccccCCcceEEEeeCc
Q 018199 96 DITREAIKEGADAVIAVGGDGT-LHEVVNGFFSAGKLVTNHNRESAHSTALGLIPLG 151 (359)
Q Consensus 96 ~~~~~~~~~~~d~ivv~GGDGT-v~evlngl~~~~~~~~~~~~~~~~~~~lgiiP~G 151 (359)
++.+.+...++|.|++.+.|.+ +.+.++.+.+ ..+|+-.+-.+
T Consensus 51 ~~~~~l~~~~vDgiii~~~~~~~~~~~i~~~~~-------------~gIpvV~~d~~ 94 (274)
T cd06311 51 AQQDLLINRKIDALVILPFESAPLTQPVAKAKK-------------AGIFVVVVDRG 94 (274)
T ss_pred HHHHHHHHcCCCEEEEeCCCchhhHHHHHHHHH-------------CCCeEEEEcCC
Confidence 4455566678999999988865 4566666542 35777776544
No 278
>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=20.67 E-value=5.1e+02 Score=24.23 Aligned_cols=37 Identities=11% Similarity=-0.013 Sum_probs=24.8
Q ss_pred chHHHHHHHHHHHcCCCEEEEEeCCchHHHHHhHhHh
Q 018199 91 PSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGFFS 127 (359)
Q Consensus 91 ~~~a~~~~~~~~~~~~d~ivv~GGDGTv~evlngl~~ 127 (359)
..+....+.++...+.|+|++.+-......++..+.+
T Consensus 189 ~~D~~~~v~~ik~a~pD~v~~~~~~~~~~~~~~~~~~ 225 (357)
T cd06337 189 TDDFSSQINAFKREGVDIVTGFAIPPDFATFWRQAAQ 225 (357)
T ss_pred CCcHHHHHHHHHhcCCCEEEeCCCccHHHHHHHHHHH
Confidence 3456667777778889998876544455556666643
No 279
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=20.52 E-value=5.7e+02 Score=22.24 Aligned_cols=45 Identities=13% Similarity=0.057 Sum_probs=25.7
Q ss_pred ccceEEEecCCch-HHHHHHHHHHHcCCCEEEEEeCCchHHHHHhHh
Q 018199 80 DCNICESLTSGPS-HAIDITREAIKEGADAVIAVGGDGTLHEVVNGF 125 (359)
Q Consensus 80 ~~~~~~~~t~~~~-~a~~~~~~~~~~~~d~ivv~GGDGTv~evlngl 125 (359)
++++.+..+.... .-.+..+.+...++|.|+++..|-+ ...++.+
T Consensus 29 g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~~~~-~~~~~~~ 74 (270)
T cd06296 29 GYDVVLSESGRRTSPERQWVERLSARRTDGVILVTPELT-SAQRAAL 74 (270)
T ss_pred CCeEEEecCCCchHHHHHHHHHHHHcCCCEEEEecCCCC-hHHHHHH
Confidence 3455444444322 2334556666778999999887644 2344444
No 280
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=20.52 E-value=6.8e+02 Score=23.07 Aligned_cols=78 Identities=10% Similarity=0.050 Sum_probs=43.2
Q ss_pred CCCCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceE--EEecCCchHHHHHHHHHHHcCCCEEEEEeCCchHHHH
Q 018199 44 SRRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNIC--ESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEV 121 (359)
Q Consensus 44 ~~~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~--~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTv~ev 121 (359)
...+++.+|+.... -++ ...+.+...+++. ++++. ........+...++.++...+.|.|++.+-.+....+
T Consensus 142 ~~~~~va~l~~~~~-~g~--~~~~~~~~~~~~~---G~~vv~~~~~~~~~~d~~~~v~~l~~~~~d~v~~~~~~~~~~~~ 215 (344)
T cd06345 142 HGFKTAAIVAEDAA-WGK--GIDAGIKALLPEA---GLEVVSVERFSPDTTDFTPILQQIKAADPDVIIAGFSGNVGVLF 215 (344)
T ss_pred CCCceEEEEecCch-hhh--HHHHHHHHHHHHc---CCeEEEEEecCCCCCchHHHHHHHHhcCCCEEEEeecCchHHHH
Confidence 44678888765432 232 2223344445442 22322 1222234456677777777889988887666555666
Q ss_pred HhHhHh
Q 018199 122 VNGFFS 127 (359)
Q Consensus 122 lngl~~ 127 (359)
+..+.+
T Consensus 216 ~~~~~~ 221 (344)
T cd06345 216 TQQWAE 221 (344)
T ss_pred HHHHHH
Confidence 666654
No 281
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=20.37 E-value=2.6e+02 Score=28.45 Aligned_cols=66 Identities=14% Similarity=0.169 Sum_probs=42.9
Q ss_pred CCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEecCCchHHHHHHHHHHHcCCCEEEEEeCCchHHHHHhHh
Q 018199 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGF 125 (359)
Q Consensus 46 ~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~GGDGTv~evlngl 125 (359)
..++.||--|.--. .++.+ .+.+ ++++..+.-...+++...++++..+++++|| |||++.+.+..+
T Consensus 107 ~~~iavv~~~~~~~-----~~~~~----~~~l--~~~i~~~~~~~~~e~~~~v~~lk~~G~~~vv---G~~~~~~~A~~~ 172 (538)
T PRK15424 107 TSSIGVVTYQETIP-----ALVAF----QKTF--NLRIEQRSYVTEEDARGQINELKANGIEAVV---GAGLITDLAEEA 172 (538)
T ss_pred CCcEEEEecCcccH-----HHHHH----HHHh--CCceEEEEecCHHHHHHHHHHHHHCCCCEEE---cCchHHHHHHHh
Confidence 45777776665321 12222 2222 2344445556678899999999889999888 778888888765
No 282
>PRK09273 hypothetical protein; Provisional
Probab=20.35 E-value=3.4e+02 Score=23.91 Aligned_cols=25 Identities=8% Similarity=0.214 Sum_probs=15.9
Q ss_pred EEcCCCCCCchhhhHHHHHHHHHhc
Q 018199 52 VVNPRGASGRTGKEWKKLLPYLRSR 76 (359)
Q Consensus 52 iiNP~SG~g~~~~~~~~~~~~l~~~ 76 (359)
++|-.|-..+..-+++.+...|++.
T Consensus 5 li~e~sqa~kn~~i~~~L~~~L~~~ 29 (211)
T PRK09273 5 LINENSQAAKNAIIYEALKKVADPK 29 (211)
T ss_pred eecccchhhhhHHHHHHHHHHHHHC
Confidence 4677775545444567777777764
No 283
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=20.31 E-value=6.4e+02 Score=22.71 Aligned_cols=34 Identities=26% Similarity=0.372 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHcCCCEEEEEeCCch-HHHHHhHhH
Q 018199 93 HAIDITREAIKEGADAVIAVGGDGT-LHEVVNGFF 126 (359)
Q Consensus 93 ~a~~~~~~~~~~~~d~ivv~GGDGT-v~evlngl~ 126 (359)
...+..+.+...++|.|++.+.|-+ +.+.+..+.
T Consensus 44 ~~~~~i~~~~~~~~DgiIi~~~~~~~~~~~~~~~~ 78 (298)
T cd06302 44 GQVQIIEDLIAQGVDAIAVVPNDPDALEPVLKKAR 78 (298)
T ss_pred HHHHHHHHHHhcCCCEEEEecCCHHHHHHHHHHHH
Confidence 3445556666678999999987744 345555543
No 284
>PF04166 PdxA: Pyridoxal phosphate biosynthetic protein PdxA; InterPro: IPR005255 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents 4-hydroxythreonine-4-phosphate dehydrogenase (PdxA, 1.1.1.262 from EC). PdxA takes part in vitamin B6 biosynthesis, forming pyridoxine 5'-phosphate from 4-(phosphohydroxy)-L-threonine and 1-deoxy-D-xylulose-5-phosphate.; GO: 0050570 4-hydroxythreonine-4-phosphate dehydrogenase activity, 0051287 NAD binding, 0008615 pyridoxine biosynthetic process, 0055114 oxidation-reduction process; PDB: 1YXO_A 1PS6_A 1PS7_C 1PTM_B 1R8K_B 2HI1_A 3LXY_A 3TSN_B.
Probab=20.29 E-value=76 Score=29.59 Aligned_cols=62 Identities=24% Similarity=0.313 Sum_probs=33.6
Q ss_pred CCcEEEEEcCCCCCCch--hhhHHHHHHHHHhccccccceEEEecCCchHHHHHHHHHHHcCCCEEEEE
Q 018199 46 RRDLVFVVNPRGASGRT--GKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIKEGADAVIAV 112 (359)
Q Consensus 46 ~~~~~iiiNP~SG~g~~--~~~~~~~~~~l~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~~~~d~ivv~ 112 (359)
||=...=+||++|.+.- .+..+.+.|.+++....++.+. +|-.+..+-.+.....||.||+.
T Consensus 177 PrIaV~gLNPHaGe~G~~G~EE~~~I~PAI~~~~~~gi~v~-----GP~paDt~F~~~~~~~fD~vvaM 240 (298)
T PF04166_consen 177 PRIAVAGLNPHAGEGGLFGREEIEIIIPAIEEARAEGIDVF-----GPYPADTVFGKANRGKFDAVVAM 240 (298)
T ss_dssp -EEEEE-SSGGGGTTTTTBSHHHHTHHHHHHHHHHTTHEEE-----EEE-HHHHTSHHHHTT-SEEEES
T ss_pred CcEEEEEeCCCCCCCCCCcHhHHHHHHHHHHHHHhCCCceE-----CCCccHHhhhcchhccCCEEEEe
Confidence 33334448999976532 2334457788776533344332 33344444455566789999975
No 285
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=20.22 E-value=6.2e+02 Score=23.38 Aligned_cols=78 Identities=9% Similarity=0.105 Sum_probs=46.3
Q ss_pred CCCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEE--EecCC--chHHHHHHHHHHHcCCCEEEEEeCCchHHH
Q 018199 45 RRRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICE--SLTSG--PSHAIDITREAIKEGADAVIAVGGDGTLHE 120 (359)
Q Consensus 45 ~~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~--~~t~~--~~~a~~~~~~~~~~~~d~ivv~GGDGTv~e 120 (359)
..+++.+|+.... -++ ..++.+...+++. +..+.. ..... ..+....++++...+.|+|++++.......
T Consensus 134 ~~~~v~ii~~~~~-~g~--~~~~~~~~~~~~~---g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~dvvi~~~~~~~~~~ 207 (350)
T cd06366 134 GWRRVATIYEDDD-YGS--GGLPDLVDALQEA---GIEISYRAAFPPSANDDDITDALKKLKEKDSRVIVVHFSPDLARR 207 (350)
T ss_pred CCcEEEEEEEcCc-ccc--hhHHHHHHHHHHc---CCEEEEEeccCCCCChhHHHHHHHHHhcCCCeEEEEECChHHHHH
Confidence 3467887775443 222 2234455555543 222221 12221 346666777776677899999988888888
Q ss_pred HHhHhHhC
Q 018199 121 VVNGFFSA 128 (359)
Q Consensus 121 vlngl~~~ 128 (359)
++..+.+.
T Consensus 208 ~~~~a~~~ 215 (350)
T cd06366 208 VFCEAYKL 215 (350)
T ss_pred HHHHHHHc
Confidence 88887654
No 286
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=20.19 E-value=5.8e+02 Score=22.18 Aligned_cols=45 Identities=11% Similarity=0.195 Sum_probs=26.0
Q ss_pred ccceEEEecCC-chHHHHHHHHHHHcCCCEEEEEeCCchHHHHHhHh
Q 018199 80 DCNICESLTSG-PSHAIDITREAIKEGADAVIAVGGDGTLHEVVNGF 125 (359)
Q Consensus 80 ~~~~~~~~t~~-~~~a~~~~~~~~~~~~d~ivv~GGDGTv~evlngl 125 (359)
++.+.+..+.. +....+..+.+...+.|.|++++.+.. ..++..+
T Consensus 29 g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~-~~~~~~l 74 (268)
T cd06273 29 GYTLLVASSGYDLDREYAQARKLLERGVDGLALIGLDHS-PALLDLL 74 (268)
T ss_pred CCEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC-HHHHHHH
Confidence 34444433332 233445666777778999999987654 3444444
No 287
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=20.18 E-value=6.5e+02 Score=22.75 Aligned_cols=61 Identities=10% Similarity=0.170 Sum_probs=32.9
Q ss_pred HHHHHHHHHhccc-cccceEEEecCC-chHHHHHHHHHHHc--CCCEEEEEeCCchHHHHHhHhH
Q 018199 66 WKKLLPYLRSRLS-VDCNICESLTSG-PSHAIDITREAIKE--GADAVIAVGGDGTLHEVVNGFF 126 (359)
Q Consensus 66 ~~~~~~~l~~~~~-~~~~~~~~~t~~-~~~a~~~~~~~~~~--~~d~ivv~GGDGTv~evlngl~ 126 (359)
|.++...+++.+. .++.+.+..+.. .....+..+.+... ++|.|++.+.+-...++++.+.
T Consensus 15 ~~~~~~gi~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~~~vdgiIi~~~~~~~~~~~~~~~ 79 (305)
T cd06324 15 WNSVARFMQAAADDLGIELEVLYAERDRFLMLQQARTILQRPDKPDALIFTNEKSVAPELLRLAE 79 (305)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHhccCCCEEEEcCCccchHHHHHHHH
Confidence 4444444433321 234444333432 22233555666677 8999999877654556666654
No 288
>PRK06455 riboflavin synthase; Provisional
Probab=20.06 E-value=5.2e+02 Score=21.57 Aligned_cols=63 Identities=17% Similarity=0.114 Sum_probs=34.3
Q ss_pred CCcEEEEEcCCCCCCchhhhHHHHHHHHHhccccccceEEEecCCchHHHHHHHHHHH-cCCCEEEEEe
Q 018199 46 RRDLVFVVNPRGASGRTGKEWKKLLPYLRSRLSVDCNICESLTSGPSHAIDITREAIK-EGADAVIAVG 113 (359)
Q Consensus 46 ~~~~~iiiNP~SG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~t~~~~~a~~~~~~~~~-~~~d~ivv~G 113 (359)
++|+.|+.-..+- ....+.....|++.. ...++.++...+.-+.--.++++.. .++|.||+.|
T Consensus 1 ~~kigIV~s~fn~----~~L~~gAi~~L~~~g-~~~~I~v~~VPGa~ELP~aakkL~~~~~yDaVIaLG 64 (155)
T PRK06455 1 MMKIGIADTTFAR----VDMGSAAIDELRKLD-PSAKIIRYTVPGIKDLPVAAKKLIEEEGCDIVMALG 64 (155)
T ss_pred CcEEEEEEEecch----HHHHHHHHHHHHhcC-CCCceEEEECCCHHHHHHHHHHHHhcCCCCEEEEec
Confidence 3567777655432 122233345555532 2334544545454455555666653 5799999876
Done!