BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018200
(359 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1M21|A Chain A, Crystal Structure Analysis Of The Peptide Amidase Pam In
Complex With The Competitive Inhibitor Chymostatin
pdb|1M21|B Chain B, Crystal Structure Analysis Of The Peptide Amidase Pam In
Complex With The Competitive Inhibitor Chymostatin
pdb|1M22|A Chain A, X-Ray Structure Of Native Peptide Amidase From
Stenotrophomonas Maltophilia At 1.4 A
pdb|1M22|B Chain B, X-Ray Structure Of Native Peptide Amidase From
Stenotrophomonas Maltophilia At 1.4 A
Length = 503
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 88/178 (49%), Gaps = 18/178 (10%)
Query: 187 PENEEDIAFMSVLELGALIRTKQITSEELTRIFLKR---LKRYNPALEAVVTYTDELAYQ 243
P E D+A +L A + ++ S LT+ +L+R L R P L AV+ + A +
Sbjct: 7 PYAETDVA-----DLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPD-ALK 60
Query: 244 QAKEADELLAQGKYLGPLHGIPYGLKDIIAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKS 303
+A E D G+ GPLHGIP LKD I T+ GS + +A++ +RL+
Sbjct: 61 EAAERDRERRDGRLRGPLHGIPLLLKDNINAAPMATSAGSLALQG-FRPDDAYLVRRLRD 119
Query: 304 AGAVLVAKLVSGSLA----YDDI--WF--GGRTRNPWNIEEFSTGSSAGPAACTSAGI 353
AGAV++ K A D I W GG+TRNP+ I GSS+G A +A +
Sbjct: 120 AGAVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAANL 177
>pdb|2DF4|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Mn2+
pdb|2DQN|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Asn
pdb|2G5H|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
pdb|2G5I|A Chain A, Structure Of Trna-dependent Amidotransferase Gatcab
Complexed With Adp-alf4
pdb|3IP4|A Chain A, The High Resolution Structure Of Gatcab
pdb|2F2A|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Gln
Length = 485
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 69/140 (49%), Gaps = 5/140 (3%)
Query: 193 IAFMSVLELGALIRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADELL 252
I + SV L LI+ K+I ++ + ++ +P +++ + E A ++A+E DEL
Sbjct: 3 IRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQ 62
Query: 253 AQGKYLGPLHGIPYGLKDIIAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAKL 312
A+ + G L GIP G+KD I +TT S + V E+ V ++L AVL+
Sbjct: 63 AKDQMDGKLFGIPMGIKDNIITNGLETTCASKMLEGFVPIYESTVMEKLHKENAVLI--- 119
Query: 313 VSGSLAYDDIWFGGRTRNPW 332
G L D+ GG T +
Sbjct: 120 --GKLNMDEFAMGGSTETSY 137
>pdb|2DC0|A Chain A, Crystal Structure Of Amidase
pdb|2DC0|B Chain B, Crystal Structure Of Amidase
Length = 434
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 78/166 (46%), Gaps = 7/166 (4%)
Query: 196 MSVLELGALIRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADELLAQG 255
M +LE L+ T + T L L+R K + A+ +E A ++A E L +G
Sbjct: 1 MDLLEAKRLLETGRTTPLALLEEALERAKAFQDR-NALAYLDEEAARKEALALTEELRRG 59
Query: 256 KYLGPLHGIPYGLKDIIAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAKL--- 312
+ GPLHG+P +KD+ V T G T L EA +RL+ AGA+L AK
Sbjct: 60 QVRGPLHGLPLTVKDLFPVKGMPTRAG-TKAPLPPLPEEARAVRRLREAGALLFAKTNXH 118
Query: 313 -VSGSLAYDDIWFGGRTRNPWNIEEFSTGSSAGPAACTSAGILLFS 357
++ + ++ W G RN + + GSS G A + GI L S
Sbjct: 119 EIALGITGENPWT-GPVRNAVDPSRQAGGSSGGSAVAVALGIGLAS 163
>pdb|3H0L|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
Length = 478
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 71/144 (49%), Gaps = 13/144 (9%)
Query: 197 SVLELGALIRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADELLAQGK 256
S+ EL L++ +++ +E+ F R YN E V Y L + K+A+ L +
Sbjct: 6 SLSELRELLKRGEVSPKEVVESFYDR---YNQTEEKVKAYITPLYGKALKQAESLKEREL 62
Query: 257 YLGPLHGIPYGLKDIIAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAK----- 311
PL GIP +KD I V KTT S +N V +A V +RLK AGA++V K
Sbjct: 63 ---PLFGIPIAVKDNILVEGEKTTCASKILENFVAPYDATVIERLKKAGALIVGKTNLDE 119
Query: 312 LVSGSLAYDDIWFGGRTRNPWNIE 335
GS +F T+NPW++E
Sbjct: 120 FAMGSSTEYSAFFP--TKNPWDLE 141
>pdb|3A2Q|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase
Complexed With Substrate
Length = 493
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 19/139 (13%)
Query: 204 LIRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADELLAQGKYLGPLHG 263
L+R+ +I+ EL + ++ NP + AV+ +++A+ EL + GP G
Sbjct: 16 LVRSGEISRTELLEATIAHVQAVNPEINAVIIPL----FEKARRESELAS-----GPFAG 66
Query: 264 IPYGLKDIIAVPQYKTTWGSTTFKNQV---LNTEAWVYKRLKSAGAVLVAKLVSGSLAYD 320
+PY LKD+ V Q S + + +A+ +R+++AG VL+ K + +
Sbjct: 67 VPYLLKDLTVVSQGDINTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPEMGNQ 126
Query: 321 -----DIWFGGRTRNPWNI 334
+ W G TRNPWN+
Sbjct: 127 VTTEPEAW--GATRNPWNL 143
>pdb|3A2P|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase
Length = 493
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 19/139 (13%)
Query: 204 LIRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADELLAQGKYLGPLHG 263
L+R+ +I+ EL + ++ NP + AV+ +++A+ EL + GP G
Sbjct: 16 LVRSGEISRTELLEATIAHVQAVNPEINAVIIPL----FEKARRESELAS-----GPFAG 66
Query: 264 IPYGLKDIIAVPQYKTTWGSTTFKNQV---LNTEAWVYKRLKSAGAVLVAKLVSGSLAYD 320
+PY LKD+ V Q S + + +A+ +R+++AG VL+ K + +
Sbjct: 67 VPYLLKDLTVVSQGDINTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPEMGNQ 126
Query: 321 -----DIWFGGRTRNPWNI 334
+ W G TRNPWN+
Sbjct: 127 VTTEPEAW--GATRNPWNL 143
>pdb|3KFU|E Chain E, Crystal Structure Of The Transamidosome
pdb|3KFU|H Chain H, Crystal Structure Of The Transamidosome
Length = 471
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 28/147 (19%)
Query: 196 MSVLELGALIRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADELLAQG 255
M E+ A + +++ E+ + +LKR++ +P L A ++ + L ++A+ D L
Sbjct: 1 MLAHEIRARVARGEVSPLEVAQAYLKRVQELDPGLGAFLSLNERL-LEEAEAVDPGL--- 56
Query: 256 KYLGPLHGIPYGLKDIIAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAKLVSG 315
PL G+ +KD IA +TT GS +N V EA RLK+ GA+++ K
Sbjct: 57 ----PLAGLVVAVKDNIATRGLRTTAGSRLLENFVPPYEATAVARLKALGALVLGK---- 108
Query: 316 SLAYDDIWFGGRTRNPWNIEEFSTGSS 342
N++EF GSS
Sbjct: 109 ----------------TNLDEFGMGSS 119
>pdb|3AL0|A Chain A, Crystal Structure Of The Glutamine Transamidosome From
Thermotoga Maritima In The Glutamylation State
Length = 475
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 64/128 (50%), Gaps = 20/128 (15%)
Query: 213 EELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADELLAQGKYLGPLHGIPYGLKDII 272
E+L ++ L+ +KR +P ++A ++ + ++ ++ +GK+ GIP +KD I
Sbjct: 23 EKLPQLSLETIKRLDPHVKAFISVRENVSVEK---------KGKF----WGIPVAIKDNI 69
Query: 273 AVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAK-----LVSGSLAYDDIWFGGR 327
+TT S +N +A V K++K AG V+V K GS +F
Sbjct: 70 LTLGMRTTCASRILENYESVFDATVVKKMKEAGFVVVGKANLDEFAMGSSTERSAFFP-- 127
Query: 328 TRNPWNIE 335
TRNPW++E
Sbjct: 128 TRNPWDLE 135
>pdb|2GI3|A Chain A, Crystal Structure Of Glutamyl-Trna(Gln) Amidotransferase
Subunit A (Tm1272) From Thermotoga Maritima At 1.80 A
Resolution
Length = 476
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 63/128 (49%), Gaps = 20/128 (15%)
Query: 213 EELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADELLAQGKYLGPLHGIPYGLKDII 272
E+L ++ L+ +KR +P ++A ++ + ++ ++ +GK+ G IP +KD I
Sbjct: 24 EKLPQLSLETIKRLDPHVKAFISVRENVSVEK---------KGKFWG----IPVAIKDNI 70
Query: 273 AVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAK-----LVSGSLAYDDIWFGGR 327
+TT S +N +A V K+ K AG V+V K GS +F
Sbjct: 71 LTLGXRTTCASRILENYESVFDATVVKKXKEAGFVVVGKANLDEFAXGSSTERSAFFP-- 128
Query: 328 TRNPWNIE 335
TRNPW++E
Sbjct: 129 TRNPWDLE 136
>pdb|1OBI|A Chain A, Crystal Structure Of The G130a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OBI|B Chain B, Crystal Structure Of The G130a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%)
Query: 253 AQGKYLGPLHGIPYGLKDIIAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAKL 312
A+ + GPL GI G+KDII T GS ++ ++A V LK AGA ++ K
Sbjct: 46 ARAQASGPLRGIAVGIKDIIDTANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKT 105
Query: 313 VSGSLAYDD 321
+ + A D
Sbjct: 106 TTTAFASRD 114
>pdb|1OBL|A Chain A, Crystal Structure Of The S133a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
pdb|1OBL|B Chain B, Crystal Structure Of The S133a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
Length = 414
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%)
Query: 253 AQGKYLGPLHGIPYGLKDIIAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAKL 312
A+ + GPL GI G+KDII T GS ++ ++A V LK AGA ++ K
Sbjct: 46 ARAQASGPLRGIAVGIKDIIDTANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKT 105
Query: 313 VSGSLAYDD 321
+ + A D
Sbjct: 106 TTTAFASRD 114
>pdb|1O9O|A Chain A, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonamate From Bradyrhizobium Japonicum
pdb|1O9O|B Chain B, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonamate From Bradyrhizobium Japonicum
pdb|1O9P|A Chain A, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
pdb|1O9P|B Chain B, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
Length = 414
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%)
Query: 253 AQGKYLGPLHGIPYGLKDIIAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAKL 312
A+ + GPL GI G+KDII T GS ++ ++A V LK AGA ++ K
Sbjct: 46 ARAQASGPLRGIAVGIKDIIDTANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKT 105
Query: 313 VSGSLAYDD 321
+ + A D
Sbjct: 106 TTTAFASRD 114
>pdb|1OCK|A Chain A, The Crystal Structure Of Malonamidase E2 From
Bradyrhizobium Japonicum
pdb|1OCK|B Chain B, The Crystal Structure Of Malonamidase E2 From
Bradyrhizobium Japonicum
pdb|1OCL|A Chain A, The Crystal Structure Of Malonamidase E2 Complexed With
Malonate From Bradyrhizobium Japonicum
pdb|1OCL|B Chain B, The Crystal Structure Of Malonamidase E2 Complexed With
Malonate From Bradyrhizobium Japonicum
pdb|1OCM|A Chain A, The Crystal Structure Of Malonamidase E2 Covalently
Complexed With Pyrophosphate From Bradyrhizobium
Japonicum
pdb|1OCM|B Chain B, The Crystal Structure Of Malonamidase E2 Covalently
Complexed With Pyrophosphate From Bradyrhizobium
Japonicum
Length = 412
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%)
Query: 253 AQGKYLGPLHGIPYGLKDIIAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAKL 312
A+ + GPL GI G+KDII T GS ++ ++A V LK AGA ++ K
Sbjct: 46 ARAQASGPLRGIAVGIKDIIDTANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKT 105
Query: 313 VSGSLAYDD 321
+ + A D
Sbjct: 106 TTTAFASRD 114
>pdb|1OBJ|A Chain A, Crystal Structure Of The T150a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OBJ|B Chain B, Crystal Structure Of The T150a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%)
Query: 253 AQGKYLGPLHGIPYGLKDIIAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAKL 312
A+ + GPL GI G+KDII T GS ++ ++A V LK AGA ++ K
Sbjct: 46 ARAQASGPLRGIAVGIKDIIDTANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKT 105
Query: 313 VSGSLAYDD 321
+ + A D
Sbjct: 106 TTTAFASRD 114
>pdb|1O9Q|A Chain A, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1O9Q|B Chain B, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OCH|A Chain A, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OCH|B Chain B, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%)
Query: 253 AQGKYLGPLHGIPYGLKDIIAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAKL 312
A+ + GPL GI G+KDII T GS ++ ++A V LK AGA ++ K
Sbjct: 46 ARAQASGPLRGIAVGIKDIIDTANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKT 105
Query: 313 VSGSLAYDD 321
+ + A D
Sbjct: 106 TTTAFASRD 114
>pdb|1OBK|A Chain A, Crystal Structure Of The R158q Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OBK|B Chain B, Crystal Structure Of The R158q Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%)
Query: 253 AQGKYLGPLHGIPYGLKDIIAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAKL 312
A+ + GPL GI G+KDII T GS ++ ++A V LK AGA ++ K
Sbjct: 46 ARAQASGPLRGIAVGIKDIIDTANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKT 105
Query: 313 VSGSLAYDD 321
+ + A D
Sbjct: 106 TTTAFASRD 114
>pdb|1O9N|A Chain A, Crystal Structure Of The K62a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1O9N|B Chain B, Crystal Structure Of The K62a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%)
Query: 253 AQGKYLGPLHGIPYGLKDIIAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAKL 312
A+ + GPL GI G+ DII T GS ++ ++A V LK AGA ++ K
Sbjct: 46 ARAQASGPLRGIAVGIADIIDTANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKT 105
Query: 313 VSGSLAYDD 321
+ + A D
Sbjct: 106 TTTAFASRD 114
>pdb|4GYR|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase Apo
pdb|4GYR|B Chain B, Granulibacter Bethesdensis Allophanate Hydrolase Apo
pdb|4GYS|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase
Co-crystallized With Malonate
pdb|4GYS|B Chain B, Granulibacter Bethesdensis Allophanate Hydrolase
Co-crystallized With Malonate
Length = 621
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 229 ALEAVVTYTDELAYQQAKEADELLAQGKYLG-------PLHGIPYGLKDIIAVPQYKTTW 281
A + + Y D+ + + +E+LA+ + L PL+G+P+ +KD I V +
Sbjct: 56 AYDRITRYGDKAVWIALRPREEVLAEARALDASPATGKPLYGVPFAVKDNIDVAGLPCSA 115
Query: 282 GSTTFKNQVLNTEAWVYKRLKSAGAVLVAK 311
F + + +A V RL++AGA+++ K
Sbjct: 116 ACPAFTYEP-DRDATVVARLRAAGAIVLGK 144
>pdb|3A1K|A Chain A, Crystal Structure Of Rhodococcus Sp. N771 Amidase
Length = 521
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Query: 259 GPLHGIPYGLKDIIAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAKLVSGSLA 318
G L G +KD + V GS T + + +A V RL +AGA + K V L
Sbjct: 86 GVLTGRRVAIKDNVTVAGVPMMNGSRTVEGFTPSRDATVVTRLLAAGATVAGKAVCEDLC 145
Query: 319 YDDIWF---GGRTRNPWN 333
+ F G RNPW+
Sbjct: 146 FSGSSFTPASGPVRNPWD 163
>pdb|3A1I|A Chain A, Crystal Structure Of Rhodococcus Sp. N-771 Amidase
Complexed With Benzamide
Length = 521
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Query: 259 GPLHGIPYGLKDIIAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAKLVSGSLA 318
G L G +KD + V GS T + + +A V RL +AGA + K V L
Sbjct: 86 GVLTGRRVAIKDNVTVAGVPMMNGSRTVEGFTPSRDATVVTRLLAAGATVAGKAVCEDLC 145
Query: 319 YDDIWF---GGRTRNPWN 333
+ F G RNPW+
Sbjct: 146 FSGSSFTPASGPVRNPWD 163
>pdb|2VYA|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase Conjugated
With The Drug-Like Inhibitor Pf-750
pdb|2VYA|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase Conjugated
With The Drug-Like Inhibitor Pf-750
Length = 587
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 60/132 (45%), Gaps = 13/132 (9%)
Query: 205 IRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADELLAQGKYLGPLHGI 264
+++ +++ E + +L + N V +Y + Q L+Q G L+G+
Sbjct: 94 LQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDCETQ--------LSQAPRQGLLYGV 145
Query: 265 PYGLKDIIAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAV-LVAKLVSGSL-AYD-- 320
P LK+ + + +T G + + ++ V + LK GAV V V S+ +YD
Sbjct: 146 PVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMFSYDCS 205
Query: 321 DIWFGGRTRNPW 332
+ F G+T NPW
Sbjct: 206 NPLF-GQTMNPW 216
>pdb|2WJ1|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(4-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|2WJ1|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(4-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|2WJ2|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(5-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|2WJ2|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(5-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|3K7F|A Chain A, Crystal Structure Analysis Of A
PhenhexylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase'
pdb|3K7F|B Chain B, Crystal Structure Analysis Of A
PhenhexylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase'
pdb|3K83|A Chain A, Crystal Structure Analysis Of A
BiphenylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3K83|B Chain B, Crystal Structure Analysis Of A
BiphenylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3K84|A Chain A, Crystal Structure Analysis Of A OleylOXADIAZOLEPYRIDINE
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3K84|B Chain B, Crystal Structure Analysis Of A OleylOXADIAZOLEPYRIDINE
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3LJ6|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845 At 2.42a Resolution
pdb|3LJ6|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845 At 2.42a Resolution
pdb|3LJ7|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With Carbamate Inhibitor
Urb597
pdb|3LJ7|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With Carbamate Inhibitor
Urb597
pdb|3OJ8|A Chain A, Alpha-Ketoheterocycle Inhibitors Of Fatty Acid Amide
Hydrolase Containing Additional Conformational
Contraints In The Acyl Side Chain
pdb|3OJ8|B Chain B, Alpha-Ketoheterocycle Inhibitors Of Fatty Acid Amide
Hydrolase Containing Additional Conformational
Contraints In The Acyl Side Chain
pdb|3PPM|A Chain A, Crystal Structure Of A Noncovalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
pdb|3PPM|B Chain B, Crystal Structure Of A Noncovalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
pdb|3PR0|A Chain A, Crystal Structure Of A Covalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
pdb|3PR0|B Chain B, Crystal Structure Of A Covalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
Length = 573
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 60/132 (45%), Gaps = 13/132 (9%)
Query: 205 IRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADELLAQGKYLGPLHGI 264
+++ +++ E + +L + N V +Y + Q L+Q G L+G+
Sbjct: 80 LQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDCETQ--------LSQAPRQGLLYGV 131
Query: 265 PYGLKDIIAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAV-LVAKLVSGSL-AYD-- 320
P LK+ + + +T G + + ++ V + LK GAV V V S+ +YD
Sbjct: 132 PVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMFSYDCS 191
Query: 321 DIWFGGRTRNPW 332
+ F G+T NPW
Sbjct: 192 NPLF-GQTMNPW 202
>pdb|1MT5|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|C Chain C, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|D Chain D, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|E Chain E, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|F Chain F, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|G Chain G, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|H Chain H, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|I Chain I, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|J Chain J, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|K Chain K, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|L Chain L, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|M Chain M, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|N Chain N, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|O Chain O, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|P Chain P, Crystal Structure Of Fatty Acid Amide Hydrolase
Length = 537
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 59/132 (44%), Gaps = 13/132 (9%)
Query: 205 IRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADELLAQGKYLGPLHGI 264
+++ +++ E + +L + N V +Y + Q L+Q G L+G+
Sbjct: 50 LQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDCETQ--------LSQAPRQGLLYGV 101
Query: 265 PYGLKDIIAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAV--LVAKLVSGSLAYD-- 320
P LK+ + + +T G + + ++ V + LK GAV + + L++D
Sbjct: 102 PVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMLSFDCS 161
Query: 321 DIWFGGRTRNPW 332
+ F G+T NPW
Sbjct: 162 NPLF-GQTMNPW 172
>pdb|4DO3|A Chain A, Structure Of Faah With A Non-steroidal Anti-inflammatory
Drug
pdb|4DO3|B Chain B, Structure Of Faah With A Non-steroidal Anti-inflammatory
Drug
Length = 571
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 59/132 (44%), Gaps = 13/132 (9%)
Query: 205 IRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADELLAQGKYLGPLHGI 264
+++ +++ E + +L + N V +Y + Q L+Q G L+G+
Sbjct: 76 LQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDCETQ--------LSQAPRQGLLYGV 127
Query: 265 PYGLKDIIAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAV--LVAKLVSGSLAYD-- 320
P LK+ + + +T G + + ++ V + LK GAV + + L++D
Sbjct: 128 PVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMLSFDCS 187
Query: 321 DIWFGGRTRNPW 332
+ F G+T NPW
Sbjct: 188 NPLF-GQTMNPW 198
>pdb|2WAP|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845
pdb|2WAP|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845
Length = 543
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 60/132 (45%), Gaps = 13/132 (9%)
Query: 205 IRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADELLAQGKYLGPLHGI 264
+++ +++ E + +L + N V +Y + Q L+Q G L+G+
Sbjct: 56 LQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDCETQ--------LSQAPRQGLLYGV 107
Query: 265 PYGLKDIIAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAV-LVAKLVSGSL-AYD-- 320
P LK+ + + +T G + + ++ V + LK GAV V V S+ +YD
Sbjct: 108 PVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMFSYDCS 167
Query: 321 DIWFGGRTRNPW 332
+ F G+T NPW
Sbjct: 168 NPLF-GQTMNPW 178
>pdb|3QK5|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QK5|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QJ8|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|3QJ8|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|3QJ9|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QJ9|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QKV|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Compound
pdb|3QKV|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Compound
Length = 587
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 59/133 (44%), Gaps = 13/133 (9%)
Query: 205 IRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADELLAQGKYLGPLHGI 264
+++ +++ E + +L + N V +Y + Q L+Q G L+G+
Sbjct: 94 LQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDCETQ--------LSQAPRQGLLYGV 145
Query: 265 PYGLKDIIAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAV--LVAKLVSGSLAYD-- 320
P LK+ + + +T G + + ++ V + LK GAV + + L++D
Sbjct: 146 PVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMLSFDCS 205
Query: 321 DIWFGGRTRNPWN 333
+ F G+T NPW
Sbjct: 206 NPLF-GQTMNPWK 217
>pdb|4HBP|A Chain A, Crystal Structure Of Faah In Complex With Inhibitor
pdb|4HBP|B Chain B, Crystal Structure Of Faah In Complex With Inhibitor
Length = 550
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 59/133 (44%), Gaps = 13/133 (9%)
Query: 205 IRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADELLAQGKYLGPLHGI 264
+++ +++ E + +L + N V +Y + Q L+Q G L+G+
Sbjct: 57 LQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDCETQ--------LSQAPRQGLLYGV 108
Query: 265 PYGLKDIIAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAV--LVAKLVSGSLAYD-- 320
P LK+ + + +T G + + ++ V + LK GAV + + L++D
Sbjct: 109 PVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMLSFDCS 168
Query: 321 DIWFGGRTRNPWN 333
+ F G+T NPW
Sbjct: 169 NPLF-GQTMNPWK 180
>pdb|3QRG|H Chain H, Crystal Structure Of Antirsvf Fab B21m
Length = 227
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 213 EELTRIFLKRLKRYNPALEAVVTYTDELAYQQA----KEADELLAQGKYLGPLHGIPYGL 268
E L I+ KRYNP+L++ +T T + + Q D + Y L+G YG
Sbjct: 48 EWLAHIYWDDDKRYNPSLKSRLTITKDTSKNQVVLTMTNMDPVDTATYYCARLYGFTYGF 107
>pdb|2CRB|A Chain A, Solution Structure Of Mit Domain From Mouse Nrbf-2
Length = 97
Score = 28.9 bits (63), Expect = 5.0, Method: Composition-based stats.
Identities = 12/18 (66%), Positives = 15/18 (83%)
Query: 240 LAYQQAKEADELLAQGKY 257
LA+QQ++ AD LLA GKY
Sbjct: 14 LAHQQSRRADRLLAAGKY 31
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,062,704
Number of Sequences: 62578
Number of extensions: 401549
Number of successful extensions: 971
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 910
Number of HSP's gapped (non-prelim): 33
length of query: 359
length of database: 14,973,337
effective HSP length: 100
effective length of query: 259
effective length of database: 8,715,537
effective search space: 2257324083
effective search space used: 2257324083
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)