Query 018200
Match_columns 359
No_of_seqs 258 out of 1317
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 06:59:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018200.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018200hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK07042 amidase; Provisional 100.0 3.9E-45 8.4E-50 371.5 18.6 167 193-359 4-173 (464)
2 PRK09201 amidase; Provisional 100.0 7.7E-45 1.7E-49 369.6 18.1 167 193-359 4-174 (465)
3 PRK07487 amidase; Provisional 100.0 8.5E-45 1.8E-49 369.7 18.0 167 193-359 5-174 (469)
4 PRK06170 amidase; Provisional 100.0 1.6E-44 3.5E-49 368.9 18.8 168 191-359 7-177 (490)
5 PRK06169 putative amidase; Pro 100.0 1.7E-44 3.7E-49 367.0 18.5 168 192-359 3-174 (466)
6 TIGR02715 amido_AtzE amidohydr 100.0 1.7E-44 3.8E-49 365.7 18.3 163 197-359 1-167 (452)
7 PRK07486 amidase; Provisional 100.0 3.2E-44 6.9E-49 366.5 18.8 169 191-359 7-179 (484)
8 PRK08137 amidase; Provisional 100.0 9E-44 1.9E-48 364.3 17.1 167 192-359 2-180 (497)
9 COG0154 GatA Asp-tRNAAsn/Glu-t 100.0 1.3E-43 2.9E-48 362.7 17.3 168 192-359 3-175 (475)
10 PRK12470 amidase; Provisional 100.0 2.2E-43 4.8E-48 358.9 18.4 166 192-359 5-173 (462)
11 PRK06102 hypothetical protein; 100.0 2.1E-43 4.7E-48 357.9 18.1 165 194-359 4-174 (452)
12 PRK07869 amidase; Provisional 100.0 2E-43 4.3E-48 359.1 16.9 163 191-359 10-175 (468)
13 PRK07488 indole acetimide hydr 100.0 2.9E-43 6.3E-48 358.5 17.8 167 191-359 6-175 (472)
14 PRK07056 amidase; Provisional 100.0 8.4E-43 1.8E-47 353.7 18.0 164 196-359 6-178 (454)
15 PRK06529 amidase; Provisional 100.0 8.7E-43 1.9E-47 355.8 16.6 160 194-359 2-165 (482)
16 PRK06061 amidase; Provisional 100.0 2.6E-42 5.5E-47 352.9 19.1 168 190-359 12-182 (483)
17 PRK00012 gatA aspartyl/glutamy 100.0 8.6E-43 1.9E-47 353.4 15.5 154 205-359 1-157 (459)
18 TIGR00132 gatA glutamyl-tRNA(G 100.0 9.1E-43 2E-47 353.3 15.3 154 201-359 1-157 (460)
19 PRK06828 amidase; Provisional 100.0 9.9E-42 2.2E-46 350.0 17.4 164 195-359 12-190 (491)
20 PF01425 Amidase: Amidase; In 100.0 2.2E-42 4.8E-47 336.8 10.6 146 214-359 1-149 (441)
21 PRK11910 amidase; Provisional 100.0 1.9E-41 4.1E-46 354.8 18.1 167 190-359 159-336 (615)
22 PRK06565 amidase; Validated 100.0 4.1E-41 9E-46 349.7 18.2 167 192-359 3-180 (566)
23 PRK06707 amidase; Provisional 100.0 5E-41 1.1E-45 348.1 18.2 167 191-359 66-245 (536)
24 PRK08186 allophanate hydrolase 100.0 1.4E-40 2.9E-45 348.8 17.0 160 195-359 6-169 (600)
25 PRK05962 amidase; Validated 100.0 7.6E-40 1.6E-44 329.6 14.6 143 217-359 2-148 (424)
26 PRK07235 amidase; Provisional 100.0 8.3E-39 1.8E-43 329.0 12.0 166 192-359 21-189 (502)
27 KOG1212 Amidases [Translation, 100.0 3.2E-34 6.9E-39 295.9 13.9 171 189-359 48-221 (560)
28 TIGR02713 allophanate_hyd allo 100.0 3.2E-34 6.9E-39 298.8 12.8 127 231-359 2-132 (561)
29 PRK07139 amidase; Provisional 100.0 9.4E-33 2E-37 279.7 11.7 129 214-359 6-137 (439)
30 PRK08310 amidase; Provisional 100.0 8.7E-33 1.9E-37 276.2 9.6 121 227-359 4-129 (395)
31 KOG1211 Amidases [Translation, 100.0 3.3E-32 7.2E-37 278.5 10.9 154 205-359 27-184 (506)
32 PLN02722 indole-3-acetamide am 100.0 5.2E-32 1.1E-36 273.4 9.7 122 227-359 4-130 (422)
33 PRK07235 amidase; Provisional 82.4 2.7 5.9E-05 44.2 6.1 48 98-147 3-50 (502)
34 TIGR00135 gatC glutamyl-tRNA(G 75.1 4.9 0.00011 32.7 4.2 42 101-144 1-42 (93)
35 PRK12821 aspartyl/glutamyl-tRN 72.1 9.2 0.0002 40.3 6.3 44 99-144 387-430 (477)
36 PRK00034 gatC aspartyl/glutamy 71.1 7.3 0.00016 31.6 4.4 43 100-144 2-44 (95)
37 PF11116 DUF2624: Protein of u 60.9 9.5 0.0002 31.5 3.1 41 99-140 13-53 (85)
38 COG0721 GatC Asp-tRNAAsn/Glu-t 49.2 27 0.00059 29.1 4.1 43 100-144 2-44 (96)
39 PF03672 UPF0154: Uncharacteri 45.8 74 0.0016 25.0 5.7 56 60-132 7-62 (64)
40 PRK00523 hypothetical protein; 36.5 1.5E+02 0.0032 23.9 6.1 33 98-131 37-69 (72)
41 PRK01844 hypothetical protein; 26.0 2.7E+02 0.0058 22.4 6.0 59 56-131 9-68 (72)
42 PF10955 DUF2757: Protein of u 25.6 19 0.00041 29.1 -0.5 33 99-131 13-45 (76)
43 TIGR03847 conserved hypothetic 24.9 1.1E+02 0.0025 28.5 4.3 37 232-268 132-168 (177)
44 PF15211 CXCL17: VEGF co-regul 24.8 36 0.00079 28.1 1.0 24 28-51 38-61 (89)
45 PF13318 DUF4089: Protein of u 23.5 2.4E+02 0.0052 20.9 5.1 26 106-132 2-27 (50)
46 PF11290 DUF3090: Protein of u 23.3 1.3E+02 0.0027 28.0 4.3 35 232-266 130-164 (171)
47 PF13833 EF-hand_8: EF-hand do 21.6 1.3E+02 0.0028 21.1 3.3 34 98-132 2-36 (54)
48 PF14237 DUF4339: Domain of un 21.3 33 0.00073 24.1 0.1 20 196-215 14-33 (45)
49 KOG1212 Amidases [Translation, 20.9 62 0.0013 35.2 2.1 60 287-346 196-257 (560)
No 1
>PRK07042 amidase; Provisional
Probab=100.00 E-value=3.9e-45 Score=371.49 Aligned_cols=167 Identities=31% Similarity=0.425 Sum_probs=160.8
Q ss_pred hccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCceEEEEcCHHHHHHHHHHHHHHHHcCCCCCCccCccEEeeccc
Q 018200 193 IAFMSVLELGALIRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADELLAQGKYLGPLHGIPYGLKDII 272 (359)
Q Consensus 193 i~~~si~eL~~lL~sg~iT~~eVv~a~L~Ri~~~n~~lNavi~~~~e~Al~qAk~lD~~~~~G~~~GPL~GIPisVKD~i 272 (359)
+..+++.+|+++|++|++|++||+++|++||+++|+.+|+|+++++|+|+++|+++|+++++|+.+||||||||+|||+|
T Consensus 4 ~~~~~~~~l~~~~~~g~~s~~el~~~~l~ri~~~~~~lna~~~~~~d~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~ 83 (464)
T PRK07042 4 LHDLSAVELLAGYRARSLSPVEVTEAVLAHIARWEPHLNALYAFDPEAARAAARASTARWAKGEPLGPLDGVPVTIKENI 83 (464)
T ss_pred hhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCccEEEEcCHHHHHHHHHHHHHHHHcCCCCCCcCCCEEEEEccc
Confidence 55679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcCccCcccccCCCCCchHHHHHHHHHCCCeEEEecCCCCcCCC---CCCCCCcCCCCCCCCCCCCCCChhHHHHH
Q 018200 273 AVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAKLVSGSLAYD---DIWFGGRTRNPWNIEEFSTGSSAGPAACT 349 (359)
Q Consensus 273 ~vkG~pTT~GS~~l~~~~~~~DA~vV~rLr~AGAIilGKTn~~ela~~---~~~~~G~T~NPwn~~~~~GGSSgGSAAaV 349 (359)
+++|++||+||..+.++++.+||++|++|+++|||++|||||+||+++ .+..||+|+||||+++++||||||||++|
T Consensus 84 ~v~G~~tt~Gs~~~~~~~~~~dA~vV~~Lr~aGAiilGKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaV 163 (464)
T PRK07042 84 ATRGVPVPLGTAATDLPPAAADAPPAARLREAGAVILAKTTMPDYGMLSSGLSSFHGLTRNPWDLDQNPGGSSAGAGAAA 163 (464)
T ss_pred ccCCcccCCCChhhcCCCCCcchHHHHHHHHCCCEEEEecCchHhhcCCCCCCCCCCCcCCCCCCCCCCCCChHHHHHHH
Confidence 999999999999999999999999999999999999999999999975 34678999999999999999999999999
Q ss_pred HcCCcccccC
Q 018200 350 SAGILLFSYC 359 (359)
Q Consensus 350 AaG~vp~AIG 359 (359)
|+|++++|||
T Consensus 164 AaG~~~~alG 173 (464)
T PRK07042 164 AAGYGPLHLG 173 (464)
T ss_pred HcCCCceeee
Confidence 9999999997
No 2
>PRK09201 amidase; Provisional
Probab=100.00 E-value=7.7e-45 Score=369.62 Aligned_cols=167 Identities=33% Similarity=0.507 Sum_probs=160.1
Q ss_pred hccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCceEEEEcCHHHHHHHHHHHHHHHHcCCCCCCccCccEEeeccc
Q 018200 193 IAFMSVLELGALIRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADELLAQGKYLGPLHGIPYGLKDII 272 (359)
Q Consensus 193 i~~~si~eL~~lL~sg~iT~~eVv~a~L~Ri~~~n~~lNavi~~~~e~Al~qAk~lD~~~~~G~~~GPL~GIPisVKD~i 272 (359)
+..+++.+|+++|++|++|++||+++|++|++++|+.+|||+++++|+|+++|+++|+++++|+.+||||||||+|||+|
T Consensus 4 ~~~~~~~~l~~~~~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~d~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~ 83 (465)
T PRK09201 4 LSSLSAAEIAAAVRAGELSARAVAQATLARIARANPQLNAFTAVTAERALAEAARIDAARAAGEPLGPLAGVPFAVKNLF 83 (465)
T ss_pred cccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCceEEEEcCHHHHHHHHHHHHHHHHcCCCCCCcCCceEEEEecc
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcCccCcccccCCCC-CchHHHHHHHHHCCCeEEEecCCCCcCCC---CCCCCCcCCCCCCCCCCCCCCChhHHHH
Q 018200 273 AVPQYKTTWGSTTFKNQVL-NTEAWVYKRLKSAGAVLVAKLVSGSLAYD---DIWFGGRTRNPWNIEEFSTGSSAGPAAC 348 (359)
Q Consensus 273 ~vkG~pTT~GS~~l~~~~~-~~DA~vV~rLr~AGAIilGKTn~~ela~~---~~~~~G~T~NPwn~~~~~GGSSgGSAAa 348 (359)
+++|++||+||..+.++++ .+||++|++|+++|||++|||||+||+++ .+..||+|+||||+++++||||||||++
T Consensus 84 ~v~G~~tt~Gs~~~~~~~~~~~dA~vV~~Lr~aGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAaa 163 (465)
T PRK09201 84 DVAGLTTLAGSKINRDRPPATRDATAVRRLEAAGAVLVGALNMDEYAYGFTTENSHYGATRNPHDLTRIAGGSSGGSAAA 163 (465)
T ss_pred ccCCcccCcCChhhccCCCCCCChHHHHHHHHCCCEEEEecChHHHhcCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHH
Confidence 9999999999999999988 69999999999999999999999999985 3456899999999999999999999999
Q ss_pred HHcCCcccccC
Q 018200 349 TSAGILLFSYC 359 (359)
Q Consensus 349 VAaG~vp~AIG 359 (359)
||+|++++|||
T Consensus 164 VAaG~~~~alG 174 (465)
T PRK09201 164 VAAGLVPFTLG 174 (465)
T ss_pred HHcCCCceEEe
Confidence 99999999997
No 3
>PRK07487 amidase; Provisional
Probab=100.00 E-value=8.5e-45 Score=369.67 Aligned_cols=167 Identities=33% Similarity=0.448 Sum_probs=160.8
Q ss_pred hccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCceEEEEcCHHHHHHHHHHHHHHHHcCCCCCCccCccEEeeccc
Q 018200 193 IAFMSVLELGALIRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADELLAQGKYLGPLHGIPYGLKDII 272 (359)
Q Consensus 193 i~~~si~eL~~lL~sg~iT~~eVv~a~L~Ri~~~n~~lNavi~~~~e~Al~qAk~lD~~~~~G~~~GPL~GIPisVKD~i 272 (359)
+..+++.+|.++|++|++|++||++++++|++++|+.+|+|+++++|+|+++|+++|+++++|+.+||||||||+|||+|
T Consensus 5 ~~~~~~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~e~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~ 84 (469)
T PRK07487 5 LWRLSAAELAAAVRSRDVSAREAAEAALARLDAVNPAINAVVDHRPEEALAQADAVDAARARGDDPGPLAGVPVTVKVNV 84 (469)
T ss_pred hhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCccEEEEeCHHHHHHHHHHhHHHHhcCCCCCCcCCCEEEEeccc
Confidence 56779999999999999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred ccCCCcCccCcccccCCCCCchHHHHHHHHHCCCeEEEecCCCCcCCC---CCCCCCcCCCCCCCCCCCCCCChhHHHHH
Q 018200 273 AVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAKLVSGSLAYD---DIWFGGRTRNPWNIEEFSTGSSAGPAACT 349 (359)
Q Consensus 273 ~vkG~pTT~GS~~l~~~~~~~DA~vV~rLr~AGAIilGKTn~~ela~~---~~~~~G~T~NPwn~~~~~GGSSgGSAAaV 349 (359)
+++|++||+||..+.++++.+||++|+||+++|||++|||||+||+++ .+..||+|+||||+++++|||||||||+|
T Consensus 85 ~v~G~~tt~Gs~~~~~~~~~~da~vV~rLr~aGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~d~~~~~GGSSgGsAaAV 164 (469)
T PRK07487 85 DQAGFATTNGVRLQKDLIAPADSPVVDNLRKAGAVIIGRTNTPAFSYRWFTDNPLHGRTLNPWDPSLTPGGSSGGAAAAV 164 (469)
T ss_pred ccCCCccCcchHHhcCCCCCCchHHHHHHHHCCCEEEEecChhhhhcCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHH
Confidence 999999999999999999999999999999999999999999999986 34567999999999999999999999999
Q ss_pred HcCCcccccC
Q 018200 350 SAGILLFSYC 359 (359)
Q Consensus 350 AaG~vp~AIG 359 (359)
|+|++|+|||
T Consensus 165 AaG~~~~alG 174 (469)
T PRK07487 165 AAGIGAIAHG 174 (469)
T ss_pred HcCCCceeee
Confidence 9999999998
No 4
>PRK06170 amidase; Provisional
Probab=100.00 E-value=1.6e-44 Score=368.91 Aligned_cols=168 Identities=33% Similarity=0.452 Sum_probs=160.6
Q ss_pred hhhccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCceEEEEcCHHHHHHHHHHHHHHHHcCCCCCCccCccEEeec
Q 018200 191 EDIAFMSVLELGALIRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADELLAQGKYLGPLHGIPYGLKD 270 (359)
Q Consensus 191 ~~i~~~si~eL~~lL~sg~iT~~eVv~a~L~Ri~~~n~~lNavi~~~~e~Al~qAk~lD~~~~~G~~~GPL~GIPisVKD 270 (359)
.++..+++.+|+++|++|++|++||++++++||+++|+.+|+|+++++|+|+++|+++|++++.| ..||||||||+|||
T Consensus 7 ~~~~~~s~~~l~~~~~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~e~al~~A~~~d~~~~~g-~~gpL~GvPv~VKD 85 (490)
T PRK06170 7 DEWSFLPATELAAALAAGEVSSVELTDLAIARIERHDGKINAIVVRDFDRARAAARAADAARARG-ERGPLLGIPVTVKE 85 (490)
T ss_pred chhhhcCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCcCEEEECCHHHHHHHHHHHHHHHhcC-CCCCcCCceEEEec
Confidence 46778899999999999999999999999999999999999999999999999999999999888 47999999999999
Q ss_pred ccccCCCcCccCcccccCCCCCchHHHHHHHHHCCCeEEEecCCCCcCCC---CCCCCCcCCCCCCCCCCCCCCChhHHH
Q 018200 271 IIAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAKLVSGSLAYD---DIWFGGRTRNPWNIEEFSTGSSAGPAA 347 (359)
Q Consensus 271 ~i~vkG~pTT~GS~~l~~~~~~~DA~vV~rLr~AGAIilGKTn~~ela~~---~~~~~G~T~NPwn~~~~~GGSSgGSAA 347 (359)
+|+++|++||+||..+.++++.+||++|+||+++|||++|||||+||+++ .+..||+|+||||+++++|||||||||
T Consensus 86 ~~~v~G~~tt~Gs~~~~~~~~~~da~vV~rLr~aGAii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAa 165 (490)
T PRK06170 86 SFNVAGLPTTWGFPDLRDYVPAEDAVAVARLKAAGAVILGKTNVPLGLQDWQSYNEIYGTTNNPWDLARTPGGSSGGSAA 165 (490)
T ss_pred ccccCCcccCCCChhhcCCCCCccHHHHHHHHHCCCEEEEecCChhhccCCCccCCCCCCCCCCCCCCCCCCCChHHHHH
Confidence 99999999999999999999999999999999999999999999999875 345679999999999999999999999
Q ss_pred HHHcCCcccccC
Q 018200 348 CTSAGILLFSYC 359 (359)
Q Consensus 348 aVAaG~vp~AIG 359 (359)
+||+|++++|||
T Consensus 166 AVAaG~~~~alG 177 (490)
T PRK06170 166 ALAAGFGALSIG 177 (490)
T ss_pred HHHcCCCceeee
Confidence 999999999997
No 5
>PRK06169 putative amidase; Provisional
Probab=100.00 E-value=1.7e-44 Score=366.99 Aligned_cols=168 Identities=32% Similarity=0.438 Sum_probs=159.8
Q ss_pred hhccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCceEEEEcCHHHHHHHHHHHHHHHHcCCCCCCccCccEEeecc
Q 018200 192 DIAFMSVLELGALIRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADELLAQGKYLGPLHGIPYGLKDI 271 (359)
Q Consensus 192 ~i~~~si~eL~~lL~sg~iT~~eVv~a~L~Ri~~~n~~lNavi~~~~e~Al~qAk~lD~~~~~G~~~GPL~GIPisVKD~ 271 (359)
++.++++.+|+++|++|++|++||+++|++|++++|+.+|+|+++++|+|+++|+++|+++++|+.+||||||||+|||+
T Consensus 3 ~~~~~~~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~ 82 (466)
T PRK06169 3 DLADLTAVELLAAYRRGELSPVEATQAVLDRIDRRDPAVNAFCLVDAEGALAAARASEERWRRGEPCGLLDGVPVSIKDI 82 (466)
T ss_pred chhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCEEEEeCHHHHHHHHHHHHHHHhcCCCCCCcCCceEEEecc
Confidence 35677999999999999999999999999999999999999999999999999999999999998899999999999999
Q ss_pred cccCCCcCccCcccccCCCC-CchHHHHHHHHHCCCeEEEecCCCCcCCC---CCCCCCcCCCCCCCCCCCCCCChhHHH
Q 018200 272 IAVPQYKTTWGSTTFKNQVL-NTEAWVYKRLKSAGAVLVAKLVSGSLAYD---DIWFGGRTRNPWNIEEFSTGSSAGPAA 347 (359)
Q Consensus 272 i~vkG~pTT~GS~~l~~~~~-~~DA~vV~rLr~AGAIilGKTn~~ela~~---~~~~~G~T~NPwn~~~~~GGSSgGSAA 347 (359)
|+++|++||+||..+.++.+ .+||++|++|+++|||++|||||+||+++ .+..||+|+||||+++++||||||||+
T Consensus 83 ~~v~G~~tt~Gs~~~~~~~p~~~da~vV~~Lr~aGAii~GKTn~~E~a~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAa 162 (466)
T PRK06169 83 FLTRGWPTLRGSRAIDADGPWDVDAPAVARLREAGAVLLGKTTTPEFGWKGVTDSPLYGITRNPWDTRLTAGGSSGGAAA 162 (466)
T ss_pred cccCCcccCccChhhccCCCCCCCHHHHHHHHHCCCEEEEecCchHhhcCCCCCCCCCCCCCCCCCCCCCCCcCcHHHHH
Confidence 99999999999999997776 69999999999999999999999999986 345689999999999999999999999
Q ss_pred HHHcCCcccccC
Q 018200 348 CTSAGILLFSYC 359 (359)
Q Consensus 348 aVAaG~vp~AIG 359 (359)
+||+|++++|||
T Consensus 163 aVAaG~~~~alG 174 (466)
T PRK06169 163 AVALGMGPLSVG 174 (466)
T ss_pred HHHcCCCceeee
Confidence 999999999997
No 6
>TIGR02715 amido_AtzE amidohydrolase, AtzE family. Members of this protein family are aminohydrolases related to, but distinct from, glutamyl-tRNA(Gln) amidotransferase subunit A. The best characterized member is the biuret hydrolase of Pseudomonas sp. ADP, which hydrolyzes ammonia from the three-nitrogen compound biuret to yield allophanate. Allophanate is also an intermediate in urea degradation by the urea carboxylase/allophanate hydrolase pathway, an alternative to urease.
Probab=100.00 E-value=1.7e-44 Score=365.66 Aligned_cols=163 Identities=33% Similarity=0.499 Sum_probs=156.8
Q ss_pred CHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCceEEEEcCHHHHHHHHHHHHHHHHcCCCCCCccCccEEeecccccCC
Q 018200 197 SVLELGALIRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADELLAQGKYLGPLHGIPYGLKDIIAVPQ 276 (359)
Q Consensus 197 si~eL~~lL~sg~iT~~eVv~a~L~Ri~~~n~~lNavi~~~~e~Al~qAk~lD~~~~~G~~~GPL~GIPisVKD~i~vkG 276 (359)
|+.+|+++|++|++|++||+++|++|++++|+.+||++++++|+|+++|+++|+++++|+.+||||||||+|||+|+++|
T Consensus 1 ~~~~l~~~l~~g~~s~~ev~~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPv~vKD~~~v~G 80 (452)
T TIGR02715 1 SIVEIAGAIRSGRVSARAVAEATLARINQADGGLNAFTAVTAERALADAARIDADLAAGSPLGPLAGVPFAVKNLFDVAG 80 (452)
T ss_pred CHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCccEEEEeCHHHHHHHHHHHHHHHHCCCCCCCcCCCeEEEEeccccCC
Confidence 57899999999999999999999999999999999999999999999999999999999989999999999999999999
Q ss_pred CcCccCcccccCCCC-CchHHHHHHHHHCCCeEEEecCCCCcCCC---CCCCCCcCCCCCCCCCCCCCCChhHHHHHHcC
Q 018200 277 YKTTWGSTTFKNQVL-NTEAWVYKRLKSAGAVLVAKLVSGSLAYD---DIWFGGRTRNPWNIEEFSTGSSAGPAACTSAG 352 (359)
Q Consensus 277 ~pTT~GS~~l~~~~~-~~DA~vV~rLr~AGAIilGKTn~~ela~~---~~~~~G~T~NPwn~~~~~GGSSgGSAAaVAaG 352 (359)
++||+||..+.++++ .+||++|+||++||||++|||||+||+++ .+..||+|+||||+++++||||||||++||+|
T Consensus 81 ~~tt~Gs~~~~~~~p~~~dA~vV~rL~~AGAii~GkTn~~Ef~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaVAag 160 (452)
T TIGR02715 81 LTTLAGAKINRDLAPAKRDATLVQRLSAAGAVLVGALNMDEFAYGFTTENAHYGPTRNPHDLTRIAGGSSGGSAAAVAAG 160 (452)
T ss_pred ceeCcCChhhccCCCCCCCHHHHHHHHHCCCEEEEeccCHhhhcCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHCC
Confidence 999999999999987 69999999999999999999999999986 34568999999999999999999999999999
Q ss_pred CcccccC
Q 018200 353 ILLFSYC 359 (359)
Q Consensus 353 ~vp~AIG 359 (359)
++++|||
T Consensus 161 ~~~~alG 167 (452)
T TIGR02715 161 LVPFSLG 167 (452)
T ss_pred CCceEEe
Confidence 9999997
No 7
>PRK07486 amidase; Provisional
Probab=100.00 E-value=3.2e-44 Score=366.48 Aligned_cols=169 Identities=33% Similarity=0.491 Sum_probs=160.8
Q ss_pred hhhccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCceEEEEcCH-HHHHHHHHHHHHHHHcCCCCCCccCccEEee
Q 018200 191 EDIAFMSVLELGALIRTKQITSEELTRIFLKRLKRYNPALEAVVTYTD-ELAYQQAKEADELLAQGKYLGPLHGIPYGLK 269 (359)
Q Consensus 191 ~~i~~~si~eL~~lL~sg~iT~~eVv~a~L~Ri~~~n~~lNavi~~~~-e~Al~qAk~lD~~~~~G~~~GPL~GIPisVK 269 (359)
+++..+++.+|.++|++|++|++||+++|++||+++|+.+|+|++++. +.++++|+++|+++++|+.+||||||||+||
T Consensus 7 ~~~~~~~~~~l~~~~~~g~~t~~ev~~~~l~ri~~~~~~~na~~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPi~vK 86 (484)
T PRK07486 7 DPIVRLSAHALSRAIRRRQVSCVEVMRAYLAHIERVNPAVNAIVALRDRDALLAEAAEKDAALARGEYRGWLHGMPQAPK 86 (484)
T ss_pred hhhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCceEEEeCccHHHHHHHHHHHHHHhcCCCCCCcCCCeEEEe
Confidence 467788999999999999999999999999999999999999999976 4579999999999999998999999999999
Q ss_pred cccccCCCcCccCcccccCCCCCchHHHHHHHHHCCCeEEEecCCCCcCCC---CCCCCCcCCCCCCCCCCCCCCChhHH
Q 018200 270 DIIAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAKLVSGSLAYD---DIWFGGRTRNPWNIEEFSTGSSAGPA 346 (359)
Q Consensus 270 D~i~vkG~pTT~GS~~l~~~~~~~DA~vV~rLr~AGAIilGKTn~~ela~~---~~~~~G~T~NPwn~~~~~GGSSgGSA 346 (359)
|+|+++|++||+||..++++++.+||++|+||+++|||++|||||+||+++ .+..||+|+||||+++++||||||||
T Consensus 87 D~~~v~G~~tt~Gs~~~~~~~~~~dA~vV~rLr~AGaii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsA 166 (484)
T PRK07486 87 DLAPTKGIRTTLGSPIFADQVPQEDAIVVERMRAAGAIFIGKTNTPEFGLGSHTYNPVYGATRNPYDPSRSAGGSSGGAA 166 (484)
T ss_pred cccccCCcCcccccHhhCCCCCCCcHHHHHHHHHCCCeeEEecCchHHhcCCCCCCCCCCCCCCCCCCCCCCCcCcHHHH
Confidence 999999999999999999999999999999999999999999999999986 34567999999999999999999999
Q ss_pred HHHHcCCcccccC
Q 018200 347 ACTSAGILLFSYC 359 (359)
Q Consensus 347 AaVAaG~vp~AIG 359 (359)
++||+|++++|||
T Consensus 167 aaVAaG~~~~aiG 179 (484)
T PRK07486 167 AALALRMLPVADG 179 (484)
T ss_pred HHHHcCCCceEee
Confidence 9999999999998
No 8
>PRK08137 amidase; Provisional
Probab=100.00 E-value=9e-44 Score=364.25 Aligned_cols=167 Identities=32% Similarity=0.408 Sum_probs=158.0
Q ss_pred hhccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHh---CCCceEEEEcCHHHHHHHHHHHHHHHHcCCCCCCccCccEEe
Q 018200 192 DIAFMSVLELGALIRTKQITSEELTRIFLKRLKRY---NPALEAVVTYTDELAYQQAKEADELLAQGKYLGPLHGIPYGL 268 (359)
Q Consensus 192 ~i~~~si~eL~~lL~sg~iT~~eVv~a~L~Ri~~~---n~~lNavi~~~~e~Al~qAk~lD~~~~~G~~~GPL~GIPisV 268 (359)
++..+++.+|+++|++|++|++||+++|++|++++ ++.+|+++++.++ |+++|+++|+++++|+.+||||||||+|
T Consensus 2 ~~~~~~~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~~~~lna~~~~~~~-al~~A~~~d~~~~~g~~~gpL~GvPi~v 80 (497)
T PRK08137 2 TALEERAGALQAAMPAGAAPASQLTRAYLQRIARIDRDGPRLNAVIELNPD-AEADAAALDAERKAGKVRGPLHGIPVLL 80 (497)
T ss_pred chhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCceeEEEEeCHH-HHHHHHHHHHHHhcCCCCCCcCCceeee
Confidence 56778999999999999999999999999999987 5689999999886 9999999999999999899999999999
Q ss_pred ecccccC-CCcCccCcccccCCCCCchHHHHHHHHHCCCeEEEecCCCCcCCC--------CCCCCCcCCCCCCCCCCCC
Q 018200 269 KDIIAVP-QYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAKLVSGSLAYD--------DIWFGGRTRNPWNIEEFST 339 (359)
Q Consensus 269 KD~i~vk-G~pTT~GS~~l~~~~~~~DA~vV~rLr~AGAIilGKTn~~ela~~--------~~~~~G~T~NPwn~~~~~G 339 (359)
||+|+++ |++||+||..+.++++.+||++|+||+++|||++|||||+||+++ .+..||+|+||||+++++|
T Consensus 81 KD~~~v~~G~~tt~Gs~~~~~~~~~~DA~vV~rLr~AGAii~GKTn~~Efa~~~~~~~~~g~n~~~G~t~NP~~~~~~~G 160 (497)
T PRK08137 81 KDNIDAADPMPTTAGSLALAGNRPTRDAFLVARLRDAGAVILGKANLSEWANFRSTRSSSGWSARGGLTRNPYALDRSPC 160 (497)
T ss_pred ecceeecCCCCcCcCcHhhcCCCCCcCcHHHHHHHHCCCEEEeecChHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 9999999 999999999999999999999999999999999999999999852 3456799999999999999
Q ss_pred CCChhHHHHHHcCCcccccC
Q 018200 340 GSSAGPAACTSAGILLFSYC 359 (359)
Q Consensus 340 GSSgGSAAaVAaG~vp~AIG 359 (359)
||||||||+||+|++|+|||
T Consensus 161 GSSgGsAaAVAaG~~~~aiG 180 (497)
T PRK08137 161 GSSSGSGAAVAAGLAAVAIG 180 (497)
T ss_pred cCccHHHHHHHcCCCceeee
Confidence 99999999999999999997
No 9
>COG0154 GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-43 Score=362.70 Aligned_cols=168 Identities=38% Similarity=0.548 Sum_probs=160.5
Q ss_pred hhccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCceEEEEcCHHHHHH--HHHHHHHHHHcCCCCCCccCccEEee
Q 018200 192 DIAFMSVLELGALIRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDELAYQ--QAKEADELLAQGKYLGPLHGIPYGLK 269 (359)
Q Consensus 192 ~i~~~si~eL~~lL~sg~iT~~eVv~a~L~Ri~~~n~~lNavi~~~~e~Al~--qAk~lD~~~~~G~~~GPL~GIPisVK 269 (359)
.+..+++.+|.++++++++|++|+++++++||++.++.+|+++++++|.++. +|+++|+++++|...|||+||||+||
T Consensus 3 ~~~~~~~~~l~~~~~~~~~s~~e~~~~~l~ri~~~~~~~na~~~~~~e~a~~~~~A~~~d~~~~~g~~~gpL~GvPiavK 82 (475)
T COG0154 3 ALTELTAAELAALLRAKELSAVELVEAYLARIEALNPDLNAFVAVDPEAALALAEAAAADARLAAGEPLGPLAGVPIAVK 82 (475)
T ss_pred chhhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCEEEEeChhhcchHHHHHHHHHHHhcCCCCCCcCCceEEEe
Confidence 4567899999999999999999999999999999999999999999998866 99999999999988899999999999
Q ss_pred cccccCCCcCccCcccccCCCCCchHHHHHHHHHCCCeEEEecCCCCcCCCC---CCCCCcCCCCCCCCCCCCCCChhHH
Q 018200 270 DIIAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAKLVSGSLAYDD---IWFGGRTRNPWNIEEFSTGSSAGPA 346 (359)
Q Consensus 270 D~i~vkG~pTT~GS~~l~~~~~~~DA~vV~rLr~AGAIilGKTn~~ela~~~---~~~~G~T~NPwn~~~~~GGSSgGSA 346 (359)
|||+++|++||+||..++++++.+||++|+||+++|||++|||||+||+++. +..||+|+||||++++|||||||||
T Consensus 83 Dn~~~~G~~Tt~gS~~l~~~~p~~DA~vV~rL~~aGaviiGKTNm~Efa~g~~~~~s~~G~t~NP~~~~~~pGGSSgGSA 162 (475)
T COG0154 83 DNIDTAGLPTTAGSKALEDYVPPYDATVVERLRAAGAVILGKTNMDEFAMGSSTENSAFGPTRNPWNLERVPGGSSGGSA 162 (475)
T ss_pred eccccCCCccCccChhhccCCCCcCcHHHHHHHHCCCEEEeecCCchhhcCCCCCCCCCCCCCCCCCCCCCCCcCchHHH
Confidence 9999999999999999999999999999999999999999999999999863 4578999999999999999999999
Q ss_pred HHHHcCCcccccC
Q 018200 347 ACTSAGILLFSYC 359 (359)
Q Consensus 347 AaVAaG~vp~AIG 359 (359)
++||+|++++|||
T Consensus 163 aAVAag~~~~alG 175 (475)
T COG0154 163 AAVAAGLVPLALG 175 (475)
T ss_pred HHHHhCCcchhcc
Confidence 9999999999998
No 10
>PRK12470 amidase; Provisional
Probab=100.00 E-value=2.2e-43 Score=358.87 Aligned_cols=166 Identities=31% Similarity=0.455 Sum_probs=157.4
Q ss_pred hhccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCceEEEEcCHHHHHHHHHHHHHHHHcCCCCCCccCccEEeecc
Q 018200 192 DIAFMSVLELGALIRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADELLAQGKYLGPLHGIPYGLKDI 271 (359)
Q Consensus 192 ~i~~~si~eL~~lL~sg~iT~~eVv~a~L~Ri~~~n~~lNavi~~~~e~Al~qAk~lD~~~~~G~~~GPL~GIPisVKD~ 271 (359)
++..+++.+|.++|++|++|++|+++++++||+++|+.+|+|+++++|+|+++|+++|+++++|..+ |||||||+|||+
T Consensus 5 ~~~~~s~~~l~~~~~~g~~s~~e~~~~~l~ri~~~~~~lna~~~~~~~~a~~~A~~~d~~~~~g~~~-pL~GvPi~vKD~ 83 (462)
T PRK12470 5 DLAFAGAAAQARMLADGELTAPMLLEVYLQRIERLDSHLRAYRVVLFDRARAEAEAAQQRLDAGERL-PLLGVPIAIKDD 83 (462)
T ss_pred hhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCcCEEEEeCHHHHHHHHHHhHHHHhcCCCC-CcCCCeEEEecC
Confidence 3566799999999999999999999999999999999999999999999999999999999988877 999999999999
Q ss_pred cccCCCcCccCcccccCCCCCchHHHHHHHHHCCCeEEEecCCCCcCCC---CCCCCCcCCCCCCCCCCCCCCChhHHHH
Q 018200 272 IAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAKLVSGSLAYD---DIWFGGRTRNPWNIEEFSTGSSAGPAAC 348 (359)
Q Consensus 272 i~vkG~pTT~GS~~l~~~~~~~DA~vV~rLr~AGAIilGKTn~~ela~~---~~~~~G~T~NPwn~~~~~GGSSgGSAAa 348 (359)
|+++|++||+||..+ ++++.+||++|+||+++|||++|||||+||+++ .+..||+|+||||+++++||||||||++
T Consensus 84 ~~v~G~~tt~Gs~~~-~~~~~~dA~vV~rLr~aGaii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaA 162 (462)
T PRK12470 84 VDVAGEVTTYGSAGH-GPAATSDAEVVRRLRAAGAVIIGKTNVPELMIMPFTESLAFGATRNPWDPNRTPGGSSGGSAAA 162 (462)
T ss_pred cccCCceeCCCCccc-CCCCCccHHHHHHHHHCCCeEEEEeChHhHhcCCCCCCCCCCCCCCCCCCCCCCCcchhHHHHH
Confidence 999999999999986 578899999999999999999999999999985 3456899999999999999999999999
Q ss_pred HHcCCcccccC
Q 018200 349 TSAGILLFSYC 359 (359)
Q Consensus 349 VAaG~vp~AIG 359 (359)
||+|++|+|||
T Consensus 163 VAaG~~~~alG 173 (462)
T PRK12470 163 VAAGLAPVALG 173 (462)
T ss_pred HHcCCCceEEe
Confidence 99999999997
No 11
>PRK06102 hypothetical protein; Provisional
Probab=100.00 E-value=2.1e-43 Score=357.91 Aligned_cols=165 Identities=25% Similarity=0.336 Sum_probs=156.1
Q ss_pred ccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCceEEEEcCHHHHHHHHHHHHHHHHcCCCCCCccCccEEeecccc
Q 018200 194 AFMSVLELGALIRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADELLAQGKYLGPLHGIPYGLKDIIA 273 (359)
Q Consensus 194 ~~~si~eL~~lL~sg~iT~~eVv~a~L~Ri~~~n~~lNavi~~~~e~Al~qAk~lD~~~~~G~~~GPL~GIPisVKD~i~ 273 (359)
..+++.+|+++|++|++|++||++++++|++++++ +|||+++.+|+|+++|+++|+++++|+.+||||||||+|||+|+
T Consensus 4 ~~~~~~~l~~~l~~g~~s~~ev~~~~l~ri~~~~~-~na~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~ 82 (452)
T PRK06102 4 GAKSAAQLAVLIQSGALDPVQVAEQALDAIASYAD-QAVFISLTEERAMREAEASSARWRAGRSLGLLDGIPIAWKDLFD 82 (452)
T ss_pred cccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCC-CCEEEEeCHHHHHHHHHHHHHHHHCCCCCCCcCCCeEEEEeccc
Confidence 35689999999999999999999999999999885 89999999999999999999999999999999999999999999
Q ss_pred cCCCcCccCcccccCCCC-CchHHHHHHHHHCCCeEEEecCCCCcCCC---CCCCCCcCCCCCCC--CCCCCCCChhHHH
Q 018200 274 VPQYKTTWGSTTFKNQVL-NTEAWVYKRLKSAGAVLVAKLVSGSLAYD---DIWFGGRTRNPWNI--EEFSTGSSAGPAA 347 (359)
Q Consensus 274 vkG~pTT~GS~~l~~~~~-~~DA~vV~rLr~AGAIilGKTn~~ela~~---~~~~~G~T~NPwn~--~~~~GGSSgGSAA 347 (359)
++|++||+||..+.++++ .+||++|+||+++|||++|||||+||+++ .+..||+|+||||+ +|++||||||||+
T Consensus 83 v~G~~tt~Gs~~~~~~~~~~~dA~vV~rL~~aGAii~GKTn~~E~a~~~~~~n~~~G~t~NP~~~~~~~~~GGSSgGsAa 162 (452)
T PRK06102 83 VAGSVTTAGSVVLANAAPASRDAAVVALLARAGMVSIGRTNMSEFAFSGLGLNPHYGTPVNPRSTDVPRIPGGSSSGSAV 162 (452)
T ss_pred cCCCccCcCChhhccCCCCCCCHHHHHHHHHCCCEEEEeechHhHhcCCCCCCCCCCCCCCCCCCCCCcCCCCCcHHHHH
Confidence 999999999999999887 69999999999999999999999999976 34568999999996 7999999999999
Q ss_pred HHHcCCcccccC
Q 018200 348 CTSAGILLFSYC 359 (359)
Q Consensus 348 aVAaG~vp~AIG 359 (359)
+||+|++++|||
T Consensus 163 aVAaG~~~~alG 174 (452)
T PRK06102 163 AVAAGLVPVAMG 174 (452)
T ss_pred HHHcCCCceEEe
Confidence 999999999997
No 12
>PRK07869 amidase; Provisional
Probab=100.00 E-value=2e-43 Score=359.08 Aligned_cols=163 Identities=22% Similarity=0.324 Sum_probs=153.6
Q ss_pred hhhccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCceEEEEcCHHHHHHHHHHHHHHHHcCCCCCCccCccEEeec
Q 018200 191 EDIAFMSVLELGALIRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADELLAQGKYLGPLHGIPYGLKD 270 (359)
Q Consensus 191 ~~i~~~si~eL~~lL~sg~iT~~eVv~a~L~Ri~~~n~~lNavi~~~~e~Al~qAk~lD~~~~~G~~~GPL~GIPisVKD 270 (359)
.++..+++.+|+++|++|++|++||++++++||+++++.+|||+++.+|+|+++|+++| ...||||||||+|||
T Consensus 10 ~~~~~~~~~~l~~~~~~g~~s~~el~~~~l~ri~~~~~~lna~~~~~~e~a~~~A~~~d------~~~gpL~GvPi~vKD 83 (468)
T PRK07869 10 DALGDLDAVGLAEAIRAGRVSAAEVVEAAIARAEAVNPALNALAYAAFDRARDRAARPG------SQGGFFSGVPTFIKD 83 (468)
T ss_pred hhhhcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCcCEEEEcCHHHHHHHHHhcC------CCCCCcCCCeEEEec
Confidence 34667799999999999999999999999999999999999999999999999998876 246899999999999
Q ss_pred ccccCCCcCccCcccccCCCCCchHHHHHHHHHCCCeEEEecCCCCcCCC---CCCCCCcCCCCCCCCCCCCCCChhHHH
Q 018200 271 IIAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAKLVSGSLAYD---DIWFGGRTRNPWNIEEFSTGSSAGPAA 347 (359)
Q Consensus 271 ~i~vkG~pTT~GS~~l~~~~~~~DA~vV~rLr~AGAIilGKTn~~ela~~---~~~~~G~T~NPwn~~~~~GGSSgGSAA 347 (359)
+|+++|++||+||..+.++++.+||++|+||+++|||++|||||+||+++ .+..||+|+||||+++++||||||||+
T Consensus 84 ~~~v~G~~tt~Gs~~~~~~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~d~~~~pGGSSgGsAa 163 (468)
T PRK07869 84 NVDVAGLPTMHGSDAWTPRPAKADSDFARQFLATGLISLGKTQLPEFGFSASTEHPRLGPVRNPWNTDYSAGASSGGSAA 163 (468)
T ss_pred CcccCCcccCcccHhhcCCCCCCcHHHHHHHHHCCCEEEEecCchHhhcCCCCCCCCCCCcCCCCCCCCCCCCCchHHHH
Confidence 99999999999999999999999999999999999999999999999986 345679999999999999999999999
Q ss_pred HHHcCCcccccC
Q 018200 348 CTSAGILLFSYC 359 (359)
Q Consensus 348 aVAaG~vp~AIG 359 (359)
+||+|++++|||
T Consensus 164 AVAaG~~~~alG 175 (468)
T PRK07869 164 LVAAGVVPIAHA 175 (468)
T ss_pred HHHcCCCceeee
Confidence 999999999997
No 13
>PRK07488 indole acetimide hydrolase; Validated
Probab=100.00 E-value=2.9e-43 Score=358.47 Aligned_cols=167 Identities=32% Similarity=0.346 Sum_probs=158.7
Q ss_pred hhhccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCceEEEEcCHHHHHHHHHHHHHHHHcCCCCCCccCccEEeec
Q 018200 191 EDIAFMSVLELGALIRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADELLAQGKYLGPLHGIPYGLKD 270 (359)
Q Consensus 191 ~~i~~~si~eL~~lL~sg~iT~~eVv~a~L~Ri~~~n~~lNavi~~~~e~Al~qAk~lD~~~~~G~~~GPL~GIPisVKD 270 (359)
.++..+++.+|+++|++|++|++||+++|++|+++.+ .+|||+++.+|+|+++|+++|++++.|+..| ||||||+|||
T Consensus 6 ~~~~~~~~~~l~~~l~~g~~s~~ev~~~~l~ri~~~~-~lna~~~~~~~~al~~A~~~d~~~~~g~~~g-L~GvPi~vKD 83 (472)
T PRK07488 6 PDVASLSLTEAAAALRSGRLSCLELVEALLARAAALA-PLNAFTTVDAEGALAAARRIDAQRAAGAALL-LAGVPIVIKD 83 (472)
T ss_pred hhhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-cCCEEEEcCHHHHHHHHHHHHHHHhcCCCCC-cCceEEEEEc
Confidence 4577889999999999999999999999999999976 6999999999999999999999998888778 9999999999
Q ss_pred ccccCCCcCccCcccccCCCCCchHHHHHHHHHCCCeEEEecCCCCcCCC---CCCCCCcCCCCCCCCCCCCCCChhHHH
Q 018200 271 IIAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAKLVSGSLAYD---DIWFGGRTRNPWNIEEFSTGSSAGPAA 347 (359)
Q Consensus 271 ~i~vkG~pTT~GS~~l~~~~~~~DA~vV~rLr~AGAIilGKTn~~ela~~---~~~~~G~T~NPwn~~~~~GGSSgGSAA 347 (359)
+|+++|++||+||..+.++++.+||++|+||+++|||++|||||+||+++ .+..||+|+||||+++++||||||||+
T Consensus 84 ~~~v~G~~tt~Gs~~~~~~~~~~dA~vV~rLr~aGAii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAa 163 (472)
T PRK07488 84 NINTAGMPTTAGTPALLGFVPATDAPVVQRLLDAGAVPLGKANMHELAFGITSNNGAFGAVRNPYDPARIAGGSSGGTAA 163 (472)
T ss_pred ccccCCCccCcCChhhccCCCCCCHHHHHHHHHCCCeeeeccChhHHhcCCCCCCCCCCCCCCCCCCCCCCCCCchHHHH
Confidence 99999999999999999999999999999999999999999999999985 345689999999999999999999999
Q ss_pred HHHcCCcccccC
Q 018200 348 CTSAGILLFSYC 359 (359)
Q Consensus 348 aVAaG~vp~AIG 359 (359)
+||+|++++|||
T Consensus 164 aVAaG~~~~alG 175 (472)
T PRK07488 164 AVAARLAPAGLG 175 (472)
T ss_pred HHHcCCCceeee
Confidence 999999999997
No 14
>PRK07056 amidase; Provisional
Probab=100.00 E-value=8.4e-43 Score=353.75 Aligned_cols=164 Identities=27% Similarity=0.334 Sum_probs=156.3
Q ss_pred CCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-CceEEEEcCHHHHHHHHHHHHHHHHcCCCCCCccCccEEeeccccc
Q 018200 196 MSVLELGALIRTKQITSEELTRIFLKRLKRYNP-ALEAVVTYTDELAYQQAKEADELLAQGKYLGPLHGIPYGLKDIIAV 274 (359)
Q Consensus 196 ~si~eL~~lL~sg~iT~~eVv~a~L~Ri~~~n~-~lNavi~~~~e~Al~qAk~lD~~~~~G~~~GPL~GIPisVKD~i~v 274 (359)
.++.+|+++|++|++|++||+++|++|++++++ .+|+|+++++|+|+++|+++|+++++|+..||||||||+|||+|++
T Consensus 6 ~~~~~l~~~~~~g~~s~~ev~~~~l~ri~~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v 85 (454)
T PRK07056 6 PTLAALAADLAAGRTTSRALVEAALARIADPAGEGARVFTHVDADAARAAADAADALRAAGAAPSPLAGIPVSVKDLFDV 85 (454)
T ss_pred cCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCCccEEEEeCHHHHHHHHHHHHHHHhCCCCCCCcCCCeEEEEeeecc
Confidence 389999999999999999999999999999986 4999999999999999999999999999999999999999999999
Q ss_pred CCCcCccCcccccCCCC-CchHHHHHHHHHCCCeEEEecCCCCcCCC---CCCCCCcCCCCC----CCCCCCCCCChhHH
Q 018200 275 PQYKTTWGSTTFKNQVL-NTEAWVYKRLKSAGAVLVAKLVSGSLAYD---DIWFGGRTRNPW----NIEEFSTGSSAGPA 346 (359)
Q Consensus 275 kG~pTT~GS~~l~~~~~-~~DA~vV~rLr~AGAIilGKTn~~ela~~---~~~~~G~T~NPw----n~~~~~GGSSgGSA 346 (359)
+|++||+||..+.++++ .+||++|+||+++|||++|||||+||+++ .+..||+|+||| |+++++||||||||
T Consensus 86 ~G~~tt~Gs~~~~~~~~~~~dA~vV~rLr~aGAii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~~~~~GGSSgGsA 165 (454)
T PRK07056 86 AGQVTRAGSRVLADAPPAAADAPAVARLRRAGAVLIGRTNMTEFAFSGLGLNPHYGTPRNPWRRDVGDGRIPGGSSSGAA 165 (454)
T ss_pred CCCccCCCChhhccCCCCCCCHHHHHHHHHCCCEEEEeccchhHhhCCCCCCCCCCCCCCCCCCCCCCCcCCCCcchHHH
Confidence 99999999999999988 69999999999999999999999999975 345689999999 89999999999999
Q ss_pred HHHHcCCcccccC
Q 018200 347 ACTSAGILLFSYC 359 (359)
Q Consensus 347 AaVAaG~vp~AIG 359 (359)
++||+|++++|||
T Consensus 166 aaVAag~~~~alG 178 (454)
T PRK07056 166 VSVADGMAAAALG 178 (454)
T ss_pred HHHHcCCCceEEe
Confidence 9999999999997
No 15
>PRK06529 amidase; Provisional
Probab=100.00 E-value=8.7e-43 Score=355.79 Aligned_cols=160 Identities=28% Similarity=0.402 Sum_probs=151.4
Q ss_pred ccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCceEEEEcCHHHHHHHHHHHHHHHHcCCCCCCccCccEEeecc-c
Q 018200 194 AFMSVLELGALIRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADELLAQGKYLGPLHGIPYGLKDI-I 272 (359)
Q Consensus 194 ~~~si~eL~~lL~sg~iT~~eVv~a~L~Ri~~~n~~lNavi~~~~e~Al~qAk~lD~~~~~G~~~GPL~GIPisVKD~-i 272 (359)
.++++.+|+++|++|++|++||++++++||++.|+.+|+|+++++|+|+++|+++|+ .| +|||||||+|||+ |
T Consensus 2 ~~~~~~~l~~~~~~g~~s~~e~~~~~l~ri~~~~~~lna~~~~~~e~al~~A~~~d~---~~---~PL~GvPi~vKD~~~ 75 (482)
T PRK06529 2 TYKDATAMAQAVQQGQVTPLELVTQAIYKAKKLNPTLNAIVSERYEEALEEAKQRDF---SG---KPFAGVPIFLKDLGQ 75 (482)
T ss_pred CcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCcccEEEecChHHHHHHHHhccc---cC---CCcCCCeEEEecCCc
Confidence 467899999999999999999999999999999999999999999999999999884 23 5999999999998 7
Q ss_pred ccCCCcCccCcccccCCCCCchHHHHHHHHHCCCeEEEecCCCCcCCC---CCCCCCcCCCCCCCCCCCCCCChhHHHHH
Q 018200 273 AVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAKLVSGSLAYD---DIWFGGRTRNPWNIEEFSTGSSAGPAACT 349 (359)
Q Consensus 273 ~vkG~pTT~GS~~l~~~~~~~DA~vV~rLr~AGAIilGKTn~~ela~~---~~~~~G~T~NPwn~~~~~GGSSgGSAAaV 349 (359)
+++|++||+||..++++++.+||++|+||++||||++|||||+||+++ .+..||+|+||||+++++|||||||||+|
T Consensus 76 ~v~G~~tt~Gs~~~~~~~~~~Da~vV~rLr~AGAiilGKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaV 155 (482)
T PRK06529 76 ELKGQLSTSGSRLFKNYQATKTDLYVKRLEDLGFIILGRSNTPEFGFKNISDSSLHGPVNLPFDNSRNAGGSSGGAAALV 155 (482)
T ss_pred ccCCCccCcchHHhcCCCCCcchHHHHHHHHCCCeEEEecCchHhhcCCCCCCcCCCCCCCCCCCCCCCCcCcHHHHHHH
Confidence 999999999999999999999999999999999999999999999986 34567999999999999999999999999
Q ss_pred HcCCcccccC
Q 018200 350 SAGILLFSYC 359 (359)
Q Consensus 350 AaG~vp~AIG 359 (359)
|+|++|+|||
T Consensus 156 AaG~~~~aiG 165 (482)
T PRK06529 156 SSGIVALAAA 165 (482)
T ss_pred HcCCCceeee
Confidence 9999999997
No 16
>PRK06061 amidase; Provisional
Probab=100.00 E-value=2.6e-42 Score=352.85 Aligned_cols=168 Identities=30% Similarity=0.376 Sum_probs=155.9
Q ss_pred hhhhccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCceEEEEcCHHHHHHHHHHHHHHHHcCCCCCCccCccEEee
Q 018200 190 EEDIAFMSVLELGALIRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADELLAQGKYLGPLHGIPYGLK 269 (359)
Q Consensus 190 ~~~i~~~si~eL~~lL~sg~iT~~eVv~a~L~Ri~~~n~~lNavi~~~~e~Al~qAk~lD~~~~~G~~~GPL~GIPisVK 269 (359)
.++..++++.+|+++|++|++|++||++++++||+++++.+|+|+++++|+|+++|+++|+++++|.. +|||||||+||
T Consensus 12 ~~~~~~~s~~~l~~~l~~g~~s~~el~~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~-~pL~GvPv~vK 90 (483)
T PRK06061 12 SGNDRLPGLTDQAYQLASGAVTSVELVRRSLRRIEASQPTLNAFRVVRAEAALAEAAEADRRRAAGDR-LPLLGVPIAVK 90 (483)
T ss_pred CCCcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCcCCEEEEeChHHHHHHHHHHHHHHhcCCC-CCcCCCeEEEE
Confidence 45678899999999999999999999999999999999999999999999999999999999988875 49999999999
Q ss_pred cccccCCCcCccCcccccCCCCCchHHHHHHHHHCCCeEEEecCCCCcCCC---CCCCCCcCCCCCCCCCCCCCCChhHH
Q 018200 270 DIIAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAKLVSGSLAYD---DIWFGGRTRNPWNIEEFSTGSSAGPA 346 (359)
Q Consensus 270 D~i~vkG~pTT~GS~~l~~~~~~~DA~vV~rLr~AGAIilGKTn~~ela~~---~~~~~G~T~NPwn~~~~~GGSSgGSA 346 (359)
|+|+++|++||+||.... .++.+||++|++|+++|||++|||||+||+++ .+..||+|+||||+++++||||||||
T Consensus 91 D~~~v~G~~tt~Gs~~~~-~~a~~dA~vV~~Lr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsA 169 (483)
T PRK06061 91 DDVDVAGVPTAFGTAGEV-PPATADSEVVRRLRAAGAVIVGKTNTCELGQWPFTSGPAFGHTRNPWSRDHTPGGSSGGSA 169 (483)
T ss_pred cccccCCceecCCCcccC-CCCCCCHHHHHHHHHCCCEEEEecCcchhccCCCCCCCCCCCCCCCCCCCCCCCCChHHHH
Confidence 999999999999998532 33469999999999999999999999999985 34567999999999999999999999
Q ss_pred HHHHcCCcccccC
Q 018200 347 ACTSAGILLFSYC 359 (359)
Q Consensus 347 AaVAaG~vp~AIG 359 (359)
++||+|++++|||
T Consensus 170 aAVAaG~~~~alG 182 (483)
T PRK06061 170 AAVAAGLVTAAIG 182 (483)
T ss_pred HHHHcCCCceEee
Confidence 9999999999997
No 17
>PRK00012 gatA aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed
Probab=100.00 E-value=8.6e-43 Score=353.39 Aligned_cols=154 Identities=39% Similarity=0.564 Sum_probs=148.1
Q ss_pred HHcCCCCHHHHHHHHHHHHHHhCCCceEEEEcCHHHHHHHHHHHHHHHHcCCCCCCccCccEEeecccccCCCcCccCcc
Q 018200 205 IRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADELLAQGKYLGPLHGIPYGLKDIIAVPQYKTTWGST 284 (359)
Q Consensus 205 L~sg~iT~~eVv~a~L~Ri~~~n~~lNavi~~~~e~Al~qAk~lD~~~~~G~~~GPL~GIPisVKD~i~vkG~pTT~GS~ 284 (359)
|++|++|++||+++|++|++++|+.+|||+++++|+|+++|+++|+++++|+ .||||||||+|||+|+++|++||+||.
T Consensus 1 i~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~-~gpL~GvPv~vKD~~~v~G~~tt~Gs~ 79 (459)
T PRK00012 1 LKNKEISAVELTQAYLDRIEEVDPKLNAFITVTEEEALAQAKAADAKLAAGE-AGPLAGIPIAIKDNICTKGIRTTCASK 79 (459)
T ss_pred CCCCcCCHHHHHHHHHHHHHHhcccCCeEEEeCHHHHHHHHHHHHHHHhcCC-CCccCCeEEEEecccccCCCccCccCH
Confidence 4689999999999999999999999999999999999999999999998888 899999999999999999999999999
Q ss_pred cccCCCCCchHHHHHHHHHCCCeEEEecCCCCcCCC---CCCCCCcCCCCCCCCCCCCCCChhHHHHHHcCCcccccC
Q 018200 285 TFKNQVLNTEAWVYKRLKSAGAVLVAKLVSGSLAYD---DIWFGGRTRNPWNIEEFSTGSSAGPAACTSAGILLFSYC 359 (359)
Q Consensus 285 ~l~~~~~~~DA~vV~rLr~AGAIilGKTn~~ela~~---~~~~~G~T~NPwn~~~~~GGSSgGSAAaVAaG~vp~AIG 359 (359)
.+.++++.+|+++|+||+++|||++|||||+||+++ .+..||+|+||||+++++||||||||++||+|++|+|||
T Consensus 80 ~~~~~~~~~da~vV~~Lr~aGAiilGkTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaVAaG~~~~alG 157 (459)
T PRK00012 80 ILENYVPPYDATVVEKLKAAGAVILGKTNMDEFAMGSSTENSAFGPTKNPWDLERVPGGSSGGSAAAVAAGLAPAALG 157 (459)
T ss_pred hhccCCCCcchHHHHHHHHCCCEEEeeccchhhhcCCCCCCCCCCCcCCCCCCCCCCCCCcHHHHHHHHcCCCceEEe
Confidence 999999999999999999999999999999999986 345689999999999999999999999999999999998
No 18
>TIGR00132 gatA glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit. This orthology group is more narrowly defined here than in Proc Natl Acad Aci USA 94, 11819-11826 (1997). In particular, a Rhodococcus homolog found in association with nitrile hydratase genes and described as an enantiomer-selective amidase active on several 2-aryl propionamides, is excluded here. It is likely, however, that the amidase subunit GatA is not exclusively a part of the Glu-tRNA(Gln) amidotransferase heterotrimer and restricted to that function in all species.
Probab=100.00 E-value=9.1e-43 Score=353.30 Aligned_cols=154 Identities=34% Similarity=0.470 Sum_probs=147.1
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHhCCCceEEEEcCHHHHHHHHHHHHHHHHcCCCCCCccCccEEeecccccCCCcCc
Q 018200 201 LGALIRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADELLAQGKYLGPLHGIPYGLKDIIAVPQYKTT 280 (359)
Q Consensus 201 L~~lL~sg~iT~~eVv~a~L~Ri~~~n~~lNavi~~~~e~Al~qAk~lD~~~~~G~~~GPL~GIPisVKD~i~vkG~pTT 280 (359)
|+++|++|++|++||+++|++||+++++.+|||+++++|+|+++|+++|++++ ||||||||+|||+|+++|++||
T Consensus 1 l~~~~~~g~~s~~ev~~~~l~ri~~~~~~~na~~~~~~~~al~~A~~~d~~~~-----gpL~GvPv~vKD~~~v~G~~tt 75 (460)
T TIGR00132 1 LRQLLKKKEISIKEVLEASLDRIEANKDKINAFLEVTVEKALKQAKKLDKAIL-----TPLAGIPIAVKDNISTKGIVTT 75 (460)
T ss_pred ChhHHhcCCCCHHHHHHHHHHHHHHhcccCCeEEEcCHHHHHHHHHHHHHhcc-----CCcCCcEEEEecccccCCcccC
Confidence 46889999999999999999999999999999999999999999999998764 8999999999999999999999
Q ss_pred cCcccccCCCCCchHHHHHHHHHCCCeEEEecCCCCcCCC---CCCCCCcCCCCCCCCCCCCCCChhHHHHHHcCCcccc
Q 018200 281 WGSTTFKNQVLNTEAWVYKRLKSAGAVLVAKLVSGSLAYD---DIWFGGRTRNPWNIEEFSTGSSAGPAACTSAGILLFS 357 (359)
Q Consensus 281 ~GS~~l~~~~~~~DA~vV~rLr~AGAIilGKTn~~ela~~---~~~~~G~T~NPwn~~~~~GGSSgGSAAaVAaG~vp~A 357 (359)
+||..+.++++.+||++|++|+++|||++|||||+||+++ .+..||+|+||||+++++||||||||++||+|++|+|
T Consensus 76 ~Gs~~~~~~~~~~dA~vV~~L~~aGAii~GKTn~~E~a~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaVAaG~~~~a 155 (460)
T TIGR00132 76 CASKILENYIPPYDATVIERLKQAGALIIGKTNMDEFAMGSSTETSAFGPTKNPWNLDRVPGGSSGGSAAAVAADLAPFS 155 (460)
T ss_pred cCChhhccCCCCCchHHHHHHHHCCCEEEEEechhHHhcCCCCCCCCCCCCCCCCCCCCCCCcCcHHHHHHHHcCCCCeE
Confidence 9999999999999999999999999999999999999985 3456899999999999999999999999999999999
Q ss_pred cC
Q 018200 358 YC 359 (359)
Q Consensus 358 IG 359 (359)
||
T Consensus 156 lG 157 (460)
T TIGR00132 156 LG 157 (460)
T ss_pred ee
Confidence 97
No 19
>PRK06828 amidase; Provisional
Probab=100.00 E-value=9.9e-42 Score=349.95 Aligned_cols=164 Identities=28% Similarity=0.438 Sum_probs=154.3
Q ss_pred cCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC---CCceEEEEcCHHHHHHHHHHHHHHHHcCCCCCCccCccEEeecc
Q 018200 195 FMSVLELGALIRTKQITSEELTRIFLKRLKRYN---PALEAVVTYTDELAYQQAKEADELLAQGKYLGPLHGIPYGLKDI 271 (359)
Q Consensus 195 ~~si~eL~~lL~sg~iT~~eVv~a~L~Ri~~~n---~~lNavi~~~~e~Al~qAk~lD~~~~~G~~~GPL~GIPisVKD~ 271 (359)
.+++.+|+++|++|++|++||+++|++||++++ +.+|+|+.+++| |+++|+++|++++.|+.+||||||||+|||+
T Consensus 12 ~~~~~~l~~~l~~g~~t~~el~~~~l~ri~~~~~~~~~lna~~~~~~~-al~~A~~~d~~~~~g~~~gpL~GvPv~vKD~ 90 (491)
T PRK06828 12 ELTIHDIQTAMEDGKLTSKELVMYYLHRIAKYDQDGPKINSILEINPD-AIFIAEALDHERKIKGVRGPLHGIPVLLKDN 90 (491)
T ss_pred cCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCeeEEEEecCHH-HHHHHHHHHHHHhcCCCCCCccCceeeeeee
Confidence 458999999999999999999999999999998 489999999988 8999999999999998899999999999999
Q ss_pred cccCC-CcCccCcccccCCCCCchHHHHHHHHHCCCeEEEecCCCCcCCC--------CCCCCCcCCCCCCC---CCCCC
Q 018200 272 IAVPQ-YKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAKLVSGSLAYD--------DIWFGGRTRNPWNI---EEFST 339 (359)
Q Consensus 272 i~vkG-~pTT~GS~~l~~~~~~~DA~vV~rLr~AGAIilGKTn~~ela~~--------~~~~~G~T~NPwn~---~~~~G 339 (359)
|+++| ++||+||..+.++++.+||++|++|+++|||++|||||+||+++ .+..||+|+||||+ +++||
T Consensus 91 ~~v~gg~~tt~Gs~~~~~~~~~~da~vV~~Lr~aGaii~GKTn~~Efa~~~~~~~~~g~n~~~G~t~NP~d~~~~~r~pG 170 (491)
T PRK06828 91 IETNDSMHTSAGTIALEQHISSEDAFLVTKLREAGAVILGKANMTELANFMSFEMWAGYSARGGQTINPYGTGEDDMFVG 170 (491)
T ss_pred EEecCCCcCCcCcHHHcCCCCCCChHHHHHHHHCCCEEEeecChHHHhhccCCCCCCCcCCCCCCcCCCCCCccCCcCCC
Confidence 99996 99999999999999999999999999999999999999999852 23467999999999 68999
Q ss_pred CCChhHHHHHHcCCcccccC
Q 018200 340 GSSAGPAACTSAGILLFSYC 359 (359)
Q Consensus 340 GSSgGSAAaVAaG~vp~AIG 359 (359)
|||||||++||+|++++|||
T Consensus 171 GSSgGsAaaVAag~~~~aiG 190 (491)
T PRK06828 171 GSSTGSAIAVAANFTVVSVG 190 (491)
T ss_pred cCchHHHHHHHcCCCceEee
Confidence 99999999999999999997
No 20
>PF01425 Amidase: Amidase; InterPro: IPR000120 Amidase signature (AS) enzymes are a large group of hydrolytic enzymes that contain a conserved stretch of approximately 130 amino acids known as the AS sequence. They are widespread, being found in both prokaryotes and eukaryotes. AS enzymes catalyse the hydrolysis of amide bonds (CO-NH2), although the family has diverged widely with regard to substrate specificity and function. Nonetheless, these enzymes maintain a core alpha/beta/alpha structure, where the topologies of the N- and C-terminal halves are similar. AS enzymes characteristically have a highly conserved C-terminal region rich in serine and glycine residues, but devoid of aspartic acid and histidine residues, therefore they differ from classical serine hydrolases. These enzymes posses a unique, highly conserved Ser-Ser-Lys catalytic triad used for amide hydrolysis, although the catalytic mechanism for acyl-enzyme intermediate formation can differ between enzymes []. Examples of AS enzymes include: Peptide amidase (Pam) [], which catalyses the hydrolysis of the C-terminal amide bond of peptides. Fatty acid amide hydrolases [], which hydrolyse fatty acid amid substrates (e.g. cannabinoid anandamide and sleep-inducing oleamide), thereby controlling the level and duration of signalling induced by this diverse class of lipid transmitters. Malonamidase E2 [], which catalyses the hydrolysis of malonamate into malonate and ammonia, and which is involved in the transport of fixed nitrogen from bacteroids to plant cells in symbiotic nitrogen metabolism. Subunit A of Glu-tRNA(Gln) amidotransferase [],a heterotrimeric enzyme that catalyses the formation of Gln-tRNA(Gln) by the transamidation of misacylated Glu-tRNA(Gln) via amidolysis of glutamine. ; GO: 0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor; PDB: 1OCL_B 1OBK_A 1OBL_B 1OBJ_A 1OCM_B 1OCH_A 1OCK_B 1OBI_A 1O9Q_A 1O9N_B ....
Probab=100.00 E-value=2.2e-42 Score=336.81 Aligned_cols=146 Identities=40% Similarity=0.552 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHHhCCCceEEEEcCHHHHHHHHHHHHHHHHcCCCCCCccCccEEeecccccCCCcCccCcccccCCCCCc
Q 018200 214 ELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADELLAQGKYLGPLHGIPYGLKDIIAVPQYKTTWGSTTFKNQVLNT 293 (359)
Q Consensus 214 eVv~a~L~Ri~~~n~~lNavi~~~~e~Al~qAk~lD~~~~~G~~~GPL~GIPisVKD~i~vkG~pTT~GS~~l~~~~~~~ 293 (359)
||+++|++||+++|+.+||+++..+++|+++|+++|+++++|..+||||||||+|||+|+++|++||+|+..+.+.++.+
T Consensus 1 e~~~~~~~ri~~~~~~~na~~~~~~~~a~~~A~~~d~~~~~~~~~~pL~Gip~~vKD~~~~~g~~tt~G~~~~~~~~~~~ 80 (441)
T PF01425_consen 1 ELVEAYLARIEAYNPELNAFVEVDFDEALAQARELDARRARGKPRGPLHGIPISVKDNIDVAGLPTTAGSPALADNPPTE 80 (441)
T ss_dssp HHHHHHHHHHHHHHHHH--EEEEEHHHHHHHHHHHHHHHHTTSSSSTTTT-EEEEETTBSBTTSBB-TTSGGGTTBBBSS
T ss_pred CHHHHHHHHHHHhCcccCEEEEECcHHHHHHHHHHHHHHhhcCCCCCCCCCceeccccccccccccccccccccCcCccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHCCCeEEEecCCCCcCCCC---CCCCCcCCCCCCCCCCCCCCChhHHHHHHcCCcccccC
Q 018200 294 EAWVYKRLKSAGAVLVAKLVSGSLAYDD---IWFGGRTRNPWNIEEFSTGSSAGPAACTSAGILLFSYC 359 (359)
Q Consensus 294 DA~vV~rLr~AGAIilGKTn~~ela~~~---~~~~G~T~NPwn~~~~~GGSSgGSAAaVAaG~vp~AIG 359 (359)
||++|++|+++|||++|||||+||+++. ++.||+|+||||+.++|||||||||++||+|++++|||
T Consensus 81 ~a~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~Np~~~~~~~GGSS~Gsaaavaag~~~~a~G 149 (441)
T PF01425_consen 81 DAPVVQRLRAAGAIIIGKTNMPEFAMGPTTSNPLYGRTRNPWNPSRTPGGSSGGSAAAVAAGFVPLAIG 149 (441)
T ss_dssp S-HHHHHHHHTT-EEEEEE--SGGGCSSSSTTTTTEE-EBTTBTTBE--SSSHHHHHHHHTTSSSEEEE
T ss_pred ccchhhheecccccceeeecccceeccccccccccccccCcccccccccccccccccccceeccccccc
Confidence 9999999999999999999999999863 45679999999999999999999999999999999997
No 21
>PRK11910 amidase; Provisional
Probab=100.00 E-value=1.9e-41 Score=354.78 Aligned_cols=167 Identities=28% Similarity=0.397 Sum_probs=155.4
Q ss_pred hhhhccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC---CceEEEEcCHHHHHHHHHHHHHHHHcCCCCCCccCccE
Q 018200 190 EEDIAFMSVLELGALIRTKQITSEELTRIFLKRLKRYNP---ALEAVVTYTDELAYQQAKEADELLAQGKYLGPLHGIPY 266 (359)
Q Consensus 190 ~~~i~~~si~eL~~lL~sg~iT~~eVv~a~L~Ri~~~n~---~lNavi~~~~e~Al~qAk~lD~~~~~G~~~GPL~GIPi 266 (359)
+..|.+.++.+|+++|++|++|++||+++||+||+++|+ .+|||++++++ |+++|+++|+++..+ .||||||||
T Consensus 159 ~~~i~~~ti~~L~~~l~~g~lT~~elv~a~L~RI~~~n~~g~~LnA~i~~~~~-Al~~A~~lD~~~~~~--~gPL~GIPv 235 (615)
T PRK11910 159 EPLIIGADVTKLQQLIATKQLSYKELAGIYLNRIKKYDQNGLNLNAITEINPT-IIAEAEQLDKENTTN--KSALYGMPV 235 (615)
T ss_pred cccchhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCceeEEEEcCHH-HHHHHHHHHHHhccC--CCCcCCCEE
Confidence 345678899999999999999999999999999999987 79999999996 899999999887665 499999999
Q ss_pred EeecccccCCCcCccCcccccCCCCCchHHHHHHHHHCCCeEEEecCCCCcCCC------CCC--CCCcCCCCCCCCCCC
Q 018200 267 GLKDIIAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAKLVSGSLAYD------DIW--FGGRTRNPWNIEEFS 338 (359)
Q Consensus 267 sVKD~i~vkG~pTT~GS~~l~~~~~~~DA~vV~rLr~AGAIilGKTn~~ela~~------~~~--~~G~T~NPwn~~~~~ 338 (359)
+|||||+++|++||+||..+.++++.+||++|++|+++|||++|||||+||+++ +.| .+|+|+||||++++|
T Consensus 236 ~VKDni~t~G~pTTaGS~al~~~~p~~DA~vV~rLr~AGAIIlGKTNm~EfA~~~~~~~~~g~s~~~G~t~NP~~~~r~p 315 (615)
T PRK11910 236 LLKDNIGTKELPTSAGTVALKDWVIGKDATIVENLKANGALILGKTNMSEWAAGMDEDLPNGYSGKKGQSKNPYSSNLDP 315 (615)
T ss_pred EEEcCcccCCCccCcccHhhcCCCCCCCHHHHHHHHHCCCEEEEEeCcchhhhCCCCCCCCCCCCCCCCcCCCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999854 122 479999999999999
Q ss_pred CCCChhHHHHHHcCCcccccC
Q 018200 339 TGSSAGPAACTSAGILLFSYC 359 (359)
Q Consensus 339 GGSSgGSAAaVAaG~vp~AIG 359 (359)
||||||||++||+|++++|||
T Consensus 316 GGSSsGSAAAVAaG~a~~AiG 336 (615)
T PRK11910 316 SGSSSGSATAATSDFAAIAIG 336 (615)
T ss_pred CCCCchHHHHHhcCCceEEee
Confidence 999999999999999999998
No 22
>PRK06565 amidase; Validated
Probab=100.00 E-value=4.1e-41 Score=349.70 Aligned_cols=167 Identities=34% Similarity=0.525 Sum_probs=157.7
Q ss_pred hhccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-----CCceEEEEcCHHHHHHHHHHHHHHHHcCCCCCCccCccE
Q 018200 192 DIAFMSVLELGALIRTKQITSEELTRIFLKRLKRYN-----PALEAVVTYTDELAYQQAKEADELLAQGKYLGPLHGIPY 266 (359)
Q Consensus 192 ~i~~~si~eL~~lL~sg~iT~~eVv~a~L~Ri~~~n-----~~lNavi~~~~e~Al~qAk~lD~~~~~G~~~GPL~GIPi 266 (359)
+|.++++.+|+++|++|++|++||+++|++||++++ +.+|+++.++++ |+++|+++|+++++|+.+||||||||
T Consensus 3 ~i~~~si~~L~~~l~~g~~t~~elv~a~l~ri~~~~~~~~~~~lna~~~~~~~-Al~~A~~~D~~~~~g~~~gpL~GIPi 81 (566)
T PRK06565 3 EVTEVSIAELRAALESGRTTAVELVKAYLARIDAYDGPATGTALNAVVVRNPD-ALKEAEASDARRARGETLGPLDGIPY 81 (566)
T ss_pred ccccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCccccCcceEEEEecCHH-HHHHHHHHHHHHhcCCCCCCCCCCEE
Confidence 466789999999999999999999999999999999 689999998877 99999999999999988899999999
Q ss_pred EeecccccCCCcCccCcccccCCCCCchHHHHHHHHHCCCeEEEecCCCCcCCCC--CCCCCcCCCCCCCCC----CCCC
Q 018200 267 GLKDIIAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAKLVSGSLAYDD--IWFGGRTRNPWNIEE----FSTG 340 (359)
Q Consensus 267 sVKD~i~vkG~pTT~GS~~l~~~~~~~DA~vV~rLr~AGAIilGKTn~~ela~~~--~~~~G~T~NPwn~~~----~~GG 340 (359)
+|||+|+++|++||+||..+.++++.+||++|++|++||||++|||||+||+++. +..||+|+||||+++ ++||
T Consensus 82 ~vKD~~~v~G~~TT~Gs~~l~~~~~~~DA~vV~rLr~AGAIilGKTnm~E~a~g~~~~~~~G~t~NP~n~~~~~~~~pGG 161 (566)
T PRK06565 82 TAKDSYLVKGLTAASGSPAFKDLVAQRDAFTIERLRAAGAICLGKTNMPPMANGGMQRGVYGRAESPYNAAYLTAPFASG 161 (566)
T ss_pred EEecccccCCCCcccccHhhcCCCCCCCHHHHHHHHHCCCEEEEecccchhhhCCCCCCCCCCcCCCcCcccCcCCCCCC
Confidence 9999999999999999999999999999999999999999999999999998763 236799999999999 5999
Q ss_pred CChhHHHHHHcCCcccccC
Q 018200 341 SSAGPAACTSAGILLFSYC 359 (359)
Q Consensus 341 SSgGSAAaVAaG~vp~AIG 359 (359)
||||||++||+|+++|+||
T Consensus 162 SSgGsAaAVAag~~~~alG 180 (566)
T PRK06565 162 SSNGAGTATAASFSAFGLA 180 (566)
T ss_pred CCccHHHHHhCCCCcceee
Confidence 9999999999999999997
No 23
>PRK06707 amidase; Provisional
Probab=100.00 E-value=5e-41 Score=348.10 Aligned_cols=167 Identities=26% Similarity=0.330 Sum_probs=154.7
Q ss_pred hhhccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC---CCceEEEEcCHHHHHHHHHHHHHHHHcCCCCCCccCccEE
Q 018200 191 EDIAFMSVLELGALIRTKQITSEELTRIFLKRLKRYN---PALEAVVTYTDELAYQQAKEADELLAQGKYLGPLHGIPYG 267 (359)
Q Consensus 191 ~~i~~~si~eL~~lL~sg~iT~~eVv~a~L~Ri~~~n---~~lNavi~~~~e~Al~qAk~lD~~~~~G~~~GPL~GIPis 267 (359)
..|..+++.+|+++|++|++|++||+++|++||++++ +.+|+|++++++ |+++|+++|++++.|. .+|||||||+
T Consensus 66 ~~i~~~~i~~l~~~~~~g~lt~~el~~~~l~ri~~~~~~~~~lna~~~~~~~-al~~A~~~d~~~~~~~-~~pL~GiPi~ 143 (536)
T PRK06707 66 KEVVNATVDELQKMIDDGKLSYEELTSIYLFRIQEHDQNGITLNSVTEINPN-AMEEARKLDQERSRNK-KSNLYGIPVV 143 (536)
T ss_pred hhhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCceEEEEECCHH-HHHHHHHHHHHHhcCC-CCCcCCCeEE
Confidence 4456789999999999999999999999999999998 469999999987 9999999999888775 4899999999
Q ss_pred eeccccc-CCCcCccCcccccCCCCCchHHHHHHHHHCCCeEEEecCCCCcCCC--------CCCCCCcCCCCCCC-CCC
Q 018200 268 LKDIIAV-PQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAKLVSGSLAYD--------DIWFGGRTRNPWNI-EEF 337 (359)
Q Consensus 268 VKD~i~v-kG~pTT~GS~~l~~~~~~~DA~vV~rLr~AGAIilGKTn~~ela~~--------~~~~~G~T~NPwn~-~~~ 337 (359)
|||||++ +|++||+||..+.++++.+||++|++|+++|||++|||||+||++. .+..||+|+||||+ .++
T Consensus 144 vKD~i~~~~g~~TtaGs~~l~~~~~~~DA~vV~rLr~AGAiilGKtnm~E~a~~~~~~~~~g~s~~~G~t~NP~~~~~~~ 223 (536)
T PRK06707 144 VKDNVQTAKVMPTSAGTYVLKDWIADQDATIVKQLKEEGAFVLGKANMSEWANYLSFTMPSGYSGKKGQNLNPYGPIKFD 223 (536)
T ss_pred EecccccCCCCccCcccHhhccCCCCCChHHHHHHHHCCCEEEEecCchhhhccCCCCCCCCCCCCCCCCCCCCCcccCC
Confidence 9999999 9999999999999999999999999999999999999999999841 23367999999998 689
Q ss_pred CCCCChhHHHHHHcCCcccccC
Q 018200 338 STGSSAGPAACTSAGILLFSYC 359 (359)
Q Consensus 338 ~GGSSgGSAAaVAaG~vp~AIG 359 (359)
+||||||||++||+|++++|||
T Consensus 224 pGGSSsGSAaAVAag~~~~aiG 245 (536)
T PRK06707 224 TSGSSSGSATVVAADFAPLAVG 245 (536)
T ss_pred CCCCCchHHHHHhCCCCceEEe
Confidence 9999999999999999999997
No 24
>PRK08186 allophanate hydrolase; Provisional
Probab=100.00 E-value=1.4e-40 Score=348.80 Aligned_cols=160 Identities=25% Similarity=0.290 Sum_probs=149.3
Q ss_pred cCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCceEEEEcCH-HHHHHHHHHHHHHHHcCCCCCCccCccEEeecccc
Q 018200 195 FMSVLELGALIRTKQITSEELTRIFLKRLKRYNPALEAVVTYTD-ELAYQQAKEADELLAQGKYLGPLHGIPYGLKDIIA 273 (359)
Q Consensus 195 ~~si~eL~~lL~sg~iT~~eVv~a~L~Ri~~~n~~lNavi~~~~-e~Al~qAk~lD~~~~~G~~~GPL~GIPisVKD~i~ 273 (359)
.+++.+|+++|++|++|++||++++++||++ ++.+|+|+++.+ ++++++|+++|++++ ..+|||||||+|||||+
T Consensus 6 ~~t~~~l~~~~~~g~~t~~evv~a~l~ri~~-~~~~~a~i~~~~~~~a~~~A~~ld~~~~---~~gPL~GVP~aVKDnid 81 (600)
T PRK08186 6 DLTLASLRAAYRAGTLTPRAVVAALYARIAA-VDDPEVWIHLRPEADLLAQAAALEARDP---AALPLYGVPFAVKDNID 81 (600)
T ss_pred cCCHHHHHHHHHcCCCCHHHHHHHHHHHHHh-cCCCCEEEEeCchHHHHHHHHHHhhhcc---ccCCCCCCeEEeeccee
Confidence 4589999999999999999999999999998 568999999987 689999999998765 35899999999999999
Q ss_pred cCCCcCccCcccccCCCCCchHHHHHHHHHCCCeEEEecCCCCcCCC---CCCCCCcCCCCCCCCCCCCCCChhHHHHHH
Q 018200 274 VPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAKLVSGSLAYD---DIWFGGRTRNPWNIEEFSTGSSAGPAACTS 350 (359)
Q Consensus 274 vkG~pTT~GS~~l~~~~~~~DA~vV~rLr~AGAIilGKTn~~ela~~---~~~~~G~T~NPwn~~~~~GGSSgGSAAaVA 350 (359)
++|++||+||..+. +.+.+||++|+||+++|||++|||||+||+++ .+..||+|+||||+++++||||||||++||
T Consensus 82 vaG~pTTaGs~~~~-~~p~~DA~vV~rLr~AGAIilGKTN~~Efa~g~~g~n~~yG~t~NP~~~~~~~GGSSsGSAaAVA 160 (600)
T PRK08186 82 VAGLPTTAACPAFA-YTPERDATVVARLRAAGAIVIGKTNLDQFATGLVGTRSPYGAVRNAFDPEYVSGGSSSGSAVAVA 160 (600)
T ss_pred cCCcccCcCCHhHc-CCCCcChHHHHHHHHCCCEEEeeecchhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHH
Confidence 99999999999996 68899999999999999999999999999986 345689999999999999999999999999
Q ss_pred cCCcccccC
Q 018200 351 AGILLFSYC 359 (359)
Q Consensus 351 aG~vp~AIG 359 (359)
+|+++||||
T Consensus 161 aG~~~~alG 169 (600)
T PRK08186 161 LGLVSFALG 169 (600)
T ss_pred cCCcceEee
Confidence 999999997
No 25
>PRK05962 amidase; Validated
Probab=100.00 E-value=7.6e-40 Score=329.62 Aligned_cols=143 Identities=26% Similarity=0.284 Sum_probs=136.9
Q ss_pred HHHHHHHHHhCCCceEEEEcCHHHHHHHHHHHHHHHHcCCCCCCccCccEEeecccccCCCcCccCcccccCCCC-CchH
Q 018200 217 RIFLKRLKRYNPALEAVVTYTDELAYQQAKEADELLAQGKYLGPLHGIPYGLKDIIAVPQYKTTWGSTTFKNQVL-NTEA 295 (359)
Q Consensus 217 ~a~L~Ri~~~n~~lNavi~~~~e~Al~qAk~lD~~~~~G~~~GPL~GIPisVKD~i~vkG~pTT~GS~~l~~~~~-~~DA 295 (359)
+++++||+++|+.+|+|+++++|+|+++|+++|+++++|+.+||||||||+|||+|+++|++||+||..+.++++ .+||
T Consensus 2 ~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~G~~tt~Gs~~~~~~~~~~~dA 81 (424)
T PRK05962 2 EATLARLAARAGEEHVFSKLYAERARAEADAADARRRAGRSLGPLDGRIVSIKDLFDVAGEPTLAGSVIRRDAPPAGADA 81 (424)
T ss_pred HHHHHHHHhhCCcccEEEEECHHHHHHHHHHHHHHHHcCCCCCCCCCCEEEEEeeeecCCcccCCCChhhhcCCCCcCCh
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999988 6899
Q ss_pred HHHHHHHHCCCeEEEecCCCCcCCC---CCCCCCcCCCCCCCCCCCCCCChhHHHHHHcCCcccccC
Q 018200 296 WVYKRLKSAGAVLVAKLVSGSLAYD---DIWFGGRTRNPWNIEEFSTGSSAGPAACTSAGILLFSYC 359 (359)
Q Consensus 296 ~vV~rLr~AGAIilGKTn~~ela~~---~~~~~G~T~NPwn~~~~~GGSSgGSAAaVAaG~vp~AIG 359 (359)
++|+||+++|||++|||||+||+++ .+..||+|+||||+++++||||||||++||+|++++|+|
T Consensus 82 ~vV~rL~~aGAiilGKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaVAaG~~~~alG 148 (424)
T PRK05962 82 LIVQRLRNAGAVIIGKTHMTEFAFTPVGLNPHYGEPGNAIDPARIPGGSSSGAAVSVAEGTSEIAIG 148 (424)
T ss_pred HHHHHHHHCCCEEEEecCchHHhcCCCCCCCCCCCCCCCCCCCCCCCcCcHHHHHHHHcCCCceEEe
Confidence 9999999999999999999999986 345789999999999999999999999999999999997
No 26
>PRK07235 amidase; Provisional
Probab=100.00 E-value=8.3e-39 Score=328.96 Aligned_cols=166 Identities=23% Similarity=0.184 Sum_probs=157.0
Q ss_pred hhccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCceEEEEcCHHHHHHHHHHHHHHHHcCCCCCCccCccEEeecc
Q 018200 192 DIAFMSVLELGALIRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADELLAQGKYLGPLHGIPYGLKDI 271 (359)
Q Consensus 192 ~i~~~si~eL~~lL~sg~iT~~eVv~a~L~Ri~~~n~~lNavi~~~~e~Al~qAk~lD~~~~~G~~~GPL~GIPisVKD~ 271 (359)
++...++.++.++++ +++++.|+++++++++...+...++++...+|++...|.+.+.+ .+|+..||||||||+||||
T Consensus 21 ~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~g~~~gpL~GvPiavKD~ 98 (502)
T PRK07235 21 DLTDEELASYLSLMQ-ASLDAYDRIDELPDEIPPVKYPRTPGYRPEAEENPYGAWYVKTS-IKGAAEGKLAGKTVALKDN 98 (502)
T ss_pred CCChhhHHHHHHHHH-hccCHHHHHHHHhhcccccCCCcccccccCcccChhcChhhhhc-cCCCCCCCcCCceEEEecc
Confidence 456778999999999 99999999999999999999999999999999999889888877 6888899999999999999
Q ss_pred cccCCCcCccCcccccCCCCCchHHHHHHHHHCCCeEEEecCCCCcCCCC---CCCCCcCCCCCCCCCCCCCCChhHHHH
Q 018200 272 IAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAKLVSGSLAYDD---IWFGGRTRNPWNIEEFSTGSSAGPAAC 348 (359)
Q Consensus 272 i~vkG~pTT~GS~~l~~~~~~~DA~vV~rLr~AGAIilGKTn~~ela~~~---~~~~G~T~NPwn~~~~~GGSSgGSAAa 348 (359)
|+++|++||+||..++++++.+||++|+||++||||++|||||+||+++. +..||+|+||||+++++|||||||||+
T Consensus 99 i~v~G~ptt~Gs~~~~~~~p~~DA~vV~rL~~AGAii~GKTn~~Ef~~~~~t~n~~~G~t~NP~~~~~~~GGSSgGsAAa 178 (502)
T PRK07235 99 VAVAGVPMMNGSSTLEGFVPSFDATVVTRLLDAGATIVGKATCEDLCFSGGSHTSDPGPVHNPRDPGYSAGGSSSGSAAL 178 (502)
T ss_pred cccCCcccCccChhhcCCCCCCCHHHHHHHHHCCCEEEEEecchhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999863 346799999999999999999999999
Q ss_pred HHcCCcccccC
Q 018200 349 TSAGILLFSYC 359 (359)
Q Consensus 349 VAaG~vp~AIG 359 (359)
||+|++++|||
T Consensus 179 VAaG~v~~aiG 189 (502)
T PRK07235 179 VAAGEVDMAIG 189 (502)
T ss_pred HHcCCCCeEEe
Confidence 99999999998
No 27
>KOG1212 consensus Amidases [Translation, ribosomal structure and biogenesis; Lipid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=3.2e-34 Score=295.85 Aligned_cols=171 Identities=28% Similarity=0.309 Sum_probs=162.0
Q ss_pred ChhhhccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCceEEEEcCHHHHHHHHHHHHHHHHcCCCCCCccCccEEe
Q 018200 189 NEEDIAFMSVLELGALIRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADELLAQGKYLGPLHGIPYGL 268 (359)
Q Consensus 189 ~~~~i~~~si~eL~~lL~sg~iT~~eVv~a~L~Ri~~~n~~lNavi~~~~e~Al~qAk~lD~~~~~G~~~GPL~GIPisV 268 (359)
....|..+++.+|++.|++|++|++|++++|++|+...|+.+||++++..|.++.+|+..|...+.+...+||+||||++
T Consensus 48 ~~~~il~~~~~~L~~~L~~~e~~~~~vl~Ay~~Ra~~vn~~lNcV~~~i~e~~~~~a~~~d~~~~~~~~k~PL~GvP~Sv 127 (560)
T KOG1212|consen 48 TRNAILKLDATELAQALQSGELTSVEVLCAYCHRAIEVNQKLNCVVEFIFEAALQAAALDDEYTAPLYEKPPLYGVPFSV 127 (560)
T ss_pred HHHHHhhcCHHHHHHHHHhCcCcHHHHHHHHHHHHHHhccCcceeeeehhhHHHHHhhchhhhhchhcccCCceecceeh
Confidence 35678999999999999999999999999999999999999999999999999999999998877776779999999999
Q ss_pred ecccccCCCcCccCcccccCCCCCchHHHHHHHHHCCCeEEEecCCCCcCCC---CCCCCCcCCCCCCCCCCCCCCChhH
Q 018200 269 KDIIAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAKLVSGSLAYD---DIWFGGRTRNPWNIEEFSTGSSAGP 345 (359)
Q Consensus 269 KD~i~vkG~pTT~GS~~l~~~~~~~DA~vV~rLr~AGAIilGKTn~~ela~~---~~~~~G~T~NPwn~~~~~GGSSgGS 345 (359)
||++.++|+.+|.|.....+++.+.|+.+|+.|+++|||++.+||.++.++. .+..||+|.||||.++++||||||+
T Consensus 128 Ke~~~vkg~d~T~G~~~~~~~~a~~ds~~V~~lk~~GaIpf~~TnvPq~~ls~~tsn~v~G~T~NP~d~~rt~GGSSGGE 207 (560)
T KOG1212|consen 128 KESISVKGYDSTAGLLARTNQPATTDSVIVEFLKKLGAIPFVLTNVPQSLLSYETSNPVYGTTKNPYDLSRTPGGSSGGE 207 (560)
T ss_pred hhheeecCccccchhhhccCCCCccchHHHHHHHHcCCCceeecCCchhhhhhhhcCCCCCCCCChhhccCCCCCCchHH
Confidence 9999999999999999999999999999999999999999999999998874 3456899999999999999999999
Q ss_pred HHHHHcCCcccccC
Q 018200 346 AACTSAGILLFSYC 359 (359)
Q Consensus 346 AAaVAaG~vp~AIG 359 (359)
||++++|+++|+||
T Consensus 208 aALigaggS~lGiG 221 (560)
T KOG1212|consen 208 AALLGAGGSLLGIG 221 (560)
T ss_pred HHHHhCCcceeccc
Confidence 99999999999998
No 28
>TIGR02713 allophanate_hyd allophanate hydrolase. Allophanate hydrolase catalyzes the second reaction in an ATP-dependent two-step degradation of urea to ammonia and C02, following the action of the biotin-containing urea carboxylase. The yeast enzyme, a fusion of allophanate hydrolase to urea carboxylase, is designated urea amidolyase.
Probab=100.00 E-value=3.2e-34 Score=298.83 Aligned_cols=127 Identities=30% Similarity=0.340 Sum_probs=118.0
Q ss_pred eEEEEcC-HHHHHHHHHHHHHHHHcCCCCCCccCccEEeecccccCCCcCccCcccccCCCCCchHHHHHHHHHCCCeEE
Q 018200 231 EAVVTYT-DELAYQQAKEADELLAQGKYLGPLHGIPYGLKDIIAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLV 309 (359)
Q Consensus 231 Navi~~~-~e~Al~qAk~lD~~~~~G~~~GPL~GIPisVKD~i~vkG~pTT~GS~~l~~~~~~~DA~vV~rLr~AGAIil 309 (359)
|+|+++. +|+|+++|+++|++++++. .+|||||||+|||||+++|++||+||..+. +++.+||++|+||+++|||++
T Consensus 2 ~a~i~~~~~e~al~~A~~ld~~~~~~~-~~PL~GvP~aVKD~idvaG~pTTaGs~~~~-~~p~~DA~vV~rLr~AGAIii 79 (561)
T TIGR02713 2 EAWISLLSEEDLLAQAAALDARDARPE-RLPLYGVPFAVKDNIDVAGLPTTAACPAFA-YTPEEDATVVALLRAAGAIVV 79 (561)
T ss_pred cEEEEeCCHHHHHHHHHHHHHHHhcCC-CCCccCCeEEEEcccccCCCccCcCCHhHc-CCCCcCHHHHHHHHHCCCEEE
Confidence 6888885 5899999999999888775 589999999999999999999999999997 788999999999999999999
Q ss_pred EecCCCCcCCC---CCCCCCcCCCCCCCCCCCCCCChhHHHHHHcCCcccccC
Q 018200 310 AKLVSGSLAYD---DIWFGGRTRNPWNIEEFSTGSSAGPAACTSAGILLFSYC 359 (359)
Q Consensus 310 GKTn~~ela~~---~~~~~G~T~NPwn~~~~~GGSSgGSAAaVAaG~vp~AIG 359 (359)
|||||+||+++ .+..||+|+||||+++++||||||||++||+|+++||||
T Consensus 80 GKTN~~Efa~g~~g~n~~~G~t~NP~d~~~~~GGSSsGSAaAVAaG~v~~alG 132 (561)
T TIGR02713 80 GKTNLDQFATGLVGTRSPYGAVRNAFDPAYISGGSSSGSAVAVARGLVPFALG 132 (561)
T ss_pred EEeCchHhhcCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCCceEEe
Confidence 99999999985 345679999999999999999999999999999999997
No 29
>PRK07139 amidase; Provisional
Probab=99.98 E-value=9.4e-33 Score=279.69 Aligned_cols=129 Identities=28% Similarity=0.248 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHhCCCceEEEEcCHHHHHHHHHHHHHHHHcCCCCCCccCccEEeecccccCCCcCccCcccccCCCCCc
Q 018200 214 ELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADELLAQGKYLGPLHGIPYGLKDIIAVPQYKTTWGSTTFKNQVLNT 293 (359)
Q Consensus 214 eVv~a~L~Ri~~~n~~lNavi~~~~e~Al~qAk~lD~~~~~G~~~GPL~GIPisVKD~i~vkG~pTT~GS~~l~~~~~~~ 293 (359)
-+.+.+|+|++. ..+||++++..+. ....||||||||+|||+|+++|++||+||..++++++.+
T Consensus 6 ~~~~~~~~~~~~--~~~~~~~~~~~~~--------------~~~~gpL~GvPvavKD~~~v~G~~tt~Gs~~l~~~~~~~ 69 (439)
T PRK07139 6 GNFQKALEELKN--DKNNAVSYVFDEK--------------NNKDGPLANCVFTIKDNFATSEGPTHASSKSLENFKPSY 69 (439)
T ss_pred hhHHHHHHHhhc--cccCeEEEEeccc--------------CCCCCCcCCcEEEEEcceecCCCccCcChHHHccCCCCC
Confidence 356777777774 5789998886642 124689999999999999999999999999999999999
Q ss_pred hHHHHHHHHHCCCeEEEecCCCCcCCC---CCCCCCcCCCCCCCCCCCCCCChhHHHHHHcCCcccccC
Q 018200 294 EAWVYKRLKSAGAVLVAKLVSGSLAYD---DIWFGGRTRNPWNIEEFSTGSSAGPAACTSAGILLFSYC 359 (359)
Q Consensus 294 DA~vV~rLr~AGAIilGKTn~~ela~~---~~~~~G~T~NPwn~~~~~GGSSgGSAAaVAaG~vp~AIG 359 (359)
||++|+||++||||++|||||+||+++ .+..||+|+||||+++++|||||||||+||+| +++|||
T Consensus 70 dA~vV~rLr~AGAIilGKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGSAAaVAag-~~~alG 137 (439)
T PRK07139 70 NATVVQKLINAGAKPVAKVHCDELGLGGTGLFSAFGLIKNPLDSSKLVGGSSSGSAATFNKN-ISFAIG 137 (439)
T ss_pred chHHHHHHHHCCCEEEEeechhhHhcCCCCCCCCCCCcCCCCCCCCCCCCCchHHHHHHHCC-CCEEEE
Confidence 999999999999999999999999985 34568999999999999999999999999997 699987
No 30
>PRK08310 amidase; Provisional
Probab=99.98 E-value=8.7e-33 Score=276.21 Aligned_cols=121 Identities=27% Similarity=0.392 Sum_probs=108.6
Q ss_pred CCCceEEEEcCHHHHHHHHHHHHHHHHcCCCCCCccCccEEeecccccCCCcCccCccccc--CCCCCchHHHHHHHHHC
Q 018200 227 NPALEAVVTYTDELAYQQAKEADELLAQGKYLGPLHGIPYGLKDIIAVPQYKTTWGSTTFK--NQVLNTEAWVYKRLKSA 304 (359)
Q Consensus 227 n~~lNavi~~~~e~Al~qAk~lD~~~~~G~~~GPL~GIPisVKD~i~vkG~pTT~GS~~l~--~~~~~~DA~vV~rLr~A 304 (359)
++.+|+|++..+. ...++..||||||||+|||+|+++|++||+||..+. +.++.+||++|+||+++
T Consensus 4 ~~~~~a~~~~~~~------------~~~~~~~gpL~GvPi~vKD~~~v~G~~tt~Gs~~~~~~~~~~~~dA~vV~~L~~a 71 (395)
T PRK08310 4 HDPFNAFIAKPDK------------PLPHAASGPLAGLRFAVKDVFDVAGYVTGCGNPDWLAESPVATRTAPAVEKLLAA 71 (395)
T ss_pred CCccccccccCCC------------CCCCCCCCCcCCCeEEEeeccccCCCccCCCCHHHHhcCCCCCCCHHHHHHHHHC
Confidence 5678999988542 134778899999999999999999999999999984 46778999999999999
Q ss_pred CCeEEEecCCCCcCCC---CCCCCCcCCCCCCCCCCCCCCChhHHHHHHcCCcccccC
Q 018200 305 GAVLVAKLVSGSLAYD---DIWFGGRTRNPWNIEEFSTGSSAGPAACTSAGILLFSYC 359 (359)
Q Consensus 305 GAIilGKTn~~ela~~---~~~~~G~T~NPwn~~~~~GGSSgGSAAaVAaG~vp~AIG 359 (359)
|||++|||||+||+++ .+..||+|+||||+++++||||||||++||+|++++|||
T Consensus 72 GAii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAaaVAag~~~~aiG 129 (395)
T PRK08310 72 GARFVGKTQTDELAFSLNGQNAHYGTPVNPAAPDRVPGGSSSGSAAAVAGGLADFALG 129 (395)
T ss_pred CCEEEEeccchHHhcCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHcCCcceEEe
Confidence 9999999999999975 345689999999999999999999999999999999997
No 31
>KOG1211 consensus Amidases [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=3.3e-32 Score=278.53 Aligned_cols=154 Identities=29% Similarity=0.405 Sum_probs=143.0
Q ss_pred HHcCCCCHHHHHHHHHHHHHHhCCCceEEEEcCHHHHHHHHHHHHHHHHcCCCCCCccCccEEeecccccCCCcC-ccCc
Q 018200 205 IRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADELLAQGKYLGPLHGIPYGLKDIIAVPQYKT-TWGS 283 (359)
Q Consensus 205 L~sg~iT~~eVv~a~L~Ri~~~n~~lNavi~~~~e~Al~qAk~lD~~~~~G~~~GPL~GIPisVKD~i~vkG~pT-T~GS 283 (359)
+.++.+++.++++.+++++...++..+.+. ...++++.+|++.+.+++++...+||+|+||+|||||+++|++| |+++
T Consensus 27 l~~~~l~~~~~ie~~l~~~~~~~~~~~~i~-~~~~~~~~~a~~~~~~~~~~~~~~~L~Gv~i~IKDnf~tk~~~t~t~~S 105 (506)
T KOG1211|consen 27 LSSGLLTSKRIIESYLERINKWKPLNAKIT-VINEEALKQAEEVTRRRKNGMEKGPLQGVPIAIKDNFDTKDKPTTTAAS 105 (506)
T ss_pred hcccccchHHHHHHHHHHHhhcccccceee-eccHHHHHHhhhccccccCCCcCCCcCCceEEEeeceecCCccCCchhh
Confidence 789999999999999999999876555555 55556999999999999999999999999999999999999999 9999
Q ss_pred ccccCCCCCchHHHHHHHHHCCCeEEEecCCCCcCCCC---CCCCCcCCCCCCCCCCCCCCChhHHHHHHcCCcccccC
Q 018200 284 TTFKNQVLNTEAWVYKRLKSAGAVLVAKLVSGSLAYDD---IWFGGRTRNPWNIEEFSTGSSAGPAACTSAGILLFSYC 359 (359)
Q Consensus 284 ~~l~~~~~~~DA~vV~rLr~AGAIilGKTn~~ela~~~---~~~~G~T~NPwn~~~~~GGSSgGSAAaVAaG~vp~AIG 359 (359)
.+++++.++.||+||++|+++||+++|||||.||+++. ...||+|+|||++.+.+||||||||++||+|+++||+|
T Consensus 106 ~~l~~~~~p~dAtVV~~L~~aGaiilGKTnmdEfamg~~~~~s~~G~t~np~~~~~v~GGSS~GSA~aVaa~l~~~alG 184 (506)
T KOG1211|consen 106 WMLEHYNPPKDATVVKKLREAGAIILGKTNMDEFAMGSSGENSHYGTTRNPLSLWRVPGGSSSGSAAAVAAGLCDFALG 184 (506)
T ss_pred hhhccCCCccccHHHHHHhhcCceEEccccHHHHhhccccccccCCccCCCCcccccCCCCcchhHHHHHhccchhhcc
Confidence 99999999999999999999999999999999999973 34679999999999999999999999999999999998
No 32
>PLN02722 indole-3-acetamide amidohydrolase
Probab=99.97 E-value=5.2e-32 Score=273.43 Aligned_cols=122 Identities=26% Similarity=0.342 Sum_probs=106.3
Q ss_pred CCCceEEEEcCHHHHHHHHHHHHHHHHcCCCCCCccCccEEeecccccCCCcCccCcccccC-CC-CCchHHHHHHHHHC
Q 018200 227 NPALEAVVTYTDELAYQQAKEADELLAQGKYLGPLHGIPYGLKDIIAVPQYKTTWGSTTFKN-QV-LNTEAWVYKRLKSA 304 (359)
Q Consensus 227 n~~lNavi~~~~e~Al~qAk~lD~~~~~G~~~GPL~GIPisVKD~i~vkG~pTT~GS~~l~~-~~-~~~DA~vV~rLr~A 304 (359)
++.+|+|++..+.+ -..+...||||||||+|||+|+++|++||+||+.+.+ +. +.+||++|+||+++
T Consensus 4 ~~~~~a~~~~~~~~-----------~~~~~~~gpL~GvPiaVKD~~~v~G~~Tt~GS~~~~~~~~~~~~dA~vV~rL~~A 72 (422)
T PLN02722 4 NPDYGAFMEKFVLS-----------PTSSSHDLPLHGLTFAVKDIFDVEGYVTGFGNPDWARTHSAATSTAPAVLAVLRG 72 (422)
T ss_pred CCCCCcceeecccc-----------CCCCCCCCCCCCCeEEEEcccccCCCccCCCCHHHHhcCCCCCCChHHHHHHHHC
Confidence 55789999885320 0112356899999999999999999999999998874 44 57899999999999
Q ss_pred CCeEEEecCCCCcCCC---CCCCCCcCCCCCCCCCCCCCCChhHHHHHHcCCcccccC
Q 018200 305 GAVLVAKLVSGSLAYD---DIWFGGRTRNPWNIEEFSTGSSAGPAACTSAGILLFSYC 359 (359)
Q Consensus 305 GAIilGKTn~~ela~~---~~~~~G~T~NPwn~~~~~GGSSgGSAAaVAaG~vp~AIG 359 (359)
|||++|||||+||+++ .+..||+|+||||++++|||||||||++||+|++|+|||
T Consensus 73 GAiilGKTn~~Efa~~~~g~n~~~G~t~NP~~~~r~pGGSSsGSAaAVAaG~~p~AlG 130 (422)
T PLN02722 73 GATCVGKTIMDEMAYSINGENAHYGTPTNPIAPDRVPGGSSSGSAVAVGAKLVDFSLG 130 (422)
T ss_pred CCEEEEEechhhHhhCCCCCCCCCCCCCCCCCCCCCCCcCcHHHHHHHHcCCCceEee
Confidence 9999999999999986 345689999999999999999999999999999999997
No 33
>PRK07235 amidase; Provisional
Probab=82.44 E-value=2.7 Score=44.20 Aligned_cols=48 Identities=10% Similarity=0.018 Sum_probs=43.9
Q ss_pred ccccCHHHHHHHHHhcCCCCCCHHHHHHHHhhccccChhHHHHHhhhhhc
Q 018200 98 EKAMHASQLKCTFELLDSNFFNERKVLEIAKGATEFNLPIIRANRKLIAS 147 (359)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (359)
.+..+.++|++.+..++++ +++.+++++...+++ ++..||.++++.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 50 (502)
T PRK07235 3 IKRPTLEQLREIAAQFGLD-LTDEELASYLSLMQA-SLDAYDRIDELPDE 50 (502)
T ss_pred CCCCCHHHHHHHHHHhCCC-CChhhHHHHHHHHHh-ccCHHHHHHHHhhc
Confidence 4568999999999999999 899999999999997 89999999999773
No 34
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=75.08 E-value=4.9 Score=32.67 Aligned_cols=42 Identities=12% Similarity=0.181 Sum_probs=37.9
Q ss_pred cCHHHHHHHHHhcCCCCCCHHHHHHHHhhccccChhHHHHHhhh
Q 018200 101 MHASQLKCTFELLDSNFFNERKVLEIAKGATEFNLPIIRANRKL 144 (359)
Q Consensus 101 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (359)
+|.++++..+++..+. |+++|++.|...++.+ +..++.+.++
T Consensus 1 i~~~~v~~lA~La~L~-l~eee~~~~~~~l~~i-l~~~~~L~~v 42 (93)
T TIGR00135 1 ISDEEVKHLAKLARLE-LSEEEAESFAGDLDKI-LGFVEQLNEV 42 (93)
T ss_pred CCHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHH-HHHHHHHhcC
Confidence 4788999999999999 7999999999999994 7888888887
No 35
>PRK12821 aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein; Provisional
Probab=72.11 E-value=9.2 Score=40.29 Aligned_cols=44 Identities=9% Similarity=0.190 Sum_probs=40.4
Q ss_pred cccCHHHHHHHHHhcCCCCCCHHHHHHHHhhccccChhHHHHHhhh
Q 018200 99 KAMHASQLKCTFELLDSNFFNERKVLEIAKGATEFNLPIIRANRKL 144 (359)
Q Consensus 99 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (359)
..++.|+++..+++.-++ ++|+|++++.+.++++ ++-.|.+.++
T Consensus 387 ~~ItkEeVkKLAkLARLe-LSEEElEkl~~dLn~I-LdyVEkLnEV 430 (477)
T PRK12821 387 QQLNKDELKKLARLVMFD-LDDAELEKLQVEFKDI-TSSFKQVEKI 430 (477)
T ss_pred ccCCHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHH-HHHHHHHccc
Confidence 579999999999999999 8999999999999984 7888888888
No 36
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=71.12 E-value=7.3 Score=31.62 Aligned_cols=43 Identities=14% Similarity=0.215 Sum_probs=38.8
Q ss_pred ccCHHHHHHHHHhcCCCCCCHHHHHHHHhhccccChhHHHHHhhh
Q 018200 100 AMHASQLKCTFELLDSNFFNERKVLEIAKGATEFNLPIIRANRKL 144 (359)
Q Consensus 100 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (359)
.++.++|+..+++.-+. ++++|++.+...++.+ +..++.+.++
T Consensus 2 ~i~~e~i~~la~La~l~-l~~ee~~~~~~~l~~i-l~~~~~l~~v 44 (95)
T PRK00034 2 AITREEVKHLAKLARLE-LSEEELEKFAGQLNKI-LDFVEQLNEV 44 (95)
T ss_pred CCCHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHH-HHHHHHHhhc
Confidence 47899999999999999 8999999999999984 7888888887
No 37
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=60.92 E-value=9.5 Score=31.47 Aligned_cols=41 Identities=15% Similarity=0.135 Sum_probs=35.5
Q ss_pred cccCHHHHHHHHHhcCCCCCCHHHHHHHHhhccccChhHHHH
Q 018200 99 KAMHASQLKCTFELLDSNFFNERKVLEIAKGATEFNLPIIRA 140 (359)
Q Consensus 99 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (359)
+.+|+++|...++-+|+. +|++|++.++..+++-++++|+.
T Consensus 13 n~iT~~eLlkyskqy~i~-it~~QA~~I~~~lr~k~inIfn~ 53 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNIS-ITKKQAEQIANILRGKNINIFNE 53 (85)
T ss_pred hcCCHHHHHHHHHHhCCC-CCHHHHHHHHHHHhcCCCCCCCH
Confidence 357999999999999999 89999999999999756666654
No 38
>COG0721 GatC Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit [Translation, ribosomal structure and biogenesis]
Probab=49.24 E-value=27 Score=29.09 Aligned_cols=43 Identities=14% Similarity=0.217 Sum_probs=38.3
Q ss_pred ccCHHHHHHHHHhcCCCCCCHHHHHHHHhhccccChhHHHHHhhh
Q 018200 100 AMHASQLKCTFELLDSNFFNERKVLEIAKGATEFNLPIIRANRKL 144 (359)
Q Consensus 100 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (359)
.++.++++..+++.-+. ||+++.+.+..-+..+ +..++.+.++
T Consensus 2 ~i~~e~v~~la~LarL~-lseee~e~~~~~l~~I-l~~veql~ev 44 (96)
T COG0721 2 AIDREEVKHLAKLARLE-LSEEELEKFATQLEDI-LGYVEQLNEV 44 (96)
T ss_pred ccCHHHHHHHHHHhhcc-cCHHHHHHHHHHHHHH-HHHHHHHHhc
Confidence 36789999999999999 7999999999999984 7778888887
No 39
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=45.83 E-value=74 Score=24.99 Aligned_cols=56 Identities=7% Similarity=0.224 Sum_probs=39.9
Q ss_pred HHHHHhhhhHHHHhhhhcccCCCCCCCcCCCCCcccccccccCHHHHHHHHHhcCCCCCCHHHHHHHHhhccc
Q 018200 60 SLLAATVGSYAALSQFHSLSDTSSPCNKMDSKNSSECSEKAMHASQLKCTFELLDSNFFNERKVLEIAKGATE 132 (359)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (359)
++.....+-|...+.+++-.. +.|.++.++++......|-. .|+.++.++...++.
T Consensus 7 li~G~~~Gff~ar~~~~k~l~----------------~NPpine~mir~M~~QMG~k-pSekqi~Q~m~~mk~ 62 (64)
T PF03672_consen 7 LIVGAVIGFFIARKYMEKQLK----------------ENPPINEKMIRAMMMQMGRK-PSEKQIKQMMRSMKN 62 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------------HCCCCCHHHHHHHHHHhCCC-ccHHHHHHHHHHHHh
Confidence 333444455555555655442 23457899999999999999 899999999887654
No 40
>PRK00523 hypothetical protein; Provisional
Probab=36.46 E-value=1.5e+02 Score=23.92 Aligned_cols=33 Identities=3% Similarity=0.239 Sum_probs=28.7
Q ss_pred ccccCHHHHHHHHHhcCCCCCCHHHHHHHHhhcc
Q 018200 98 EKAMHASQLKCTFELLDSNFFNERKVLEIAKGAT 131 (359)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (359)
.|.++.++++......|-. -|++++.++...++
T Consensus 37 NPpine~mir~M~~QMGqK-PSekki~Q~m~~mk 69 (72)
T PRK00523 37 NPPITENMIRAMYMQMGRK-PSESQIKQVMRSVK 69 (72)
T ss_pred CcCCCHHHHHHHHHHhCCC-ccHHHHHHHHHHHH
Confidence 4568899999999999999 89999999887764
No 41
>PRK01844 hypothetical protein; Provisional
Probab=25.99 E-value=2.7e+02 Score=22.42 Aligned_cols=59 Identities=8% Similarity=0.140 Sum_probs=41.1
Q ss_pred HHHHHHHHHhhhhHHHHhh-hhcccCCCCCCCcCCCCCcccccccccCHHHHHHHHHhcCCCCCCHHHHHHHHhhcc
Q 018200 56 CVIFSLLAATVGSYAALSQ-FHSLSDTSSPCNKMDSKNSSECSEKAMHASQLKCTFELLDSNFFNERKVLEIAKGAT 131 (359)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (359)
..++.|+..++..+...|+ +++-+ .+.|.++.++++......|-. -|++++.++...++
T Consensus 9 l~I~~li~G~~~Gff~ark~~~k~l----------------k~NPpine~mir~Mm~QMGqk-PSekki~Q~m~~mk 68 (72)
T PRK01844 9 VGVVALVAGVALGFFIARKYMMNYL----------------QKNPPINEQMLKMMMMQMGQK-PSQKKINQMMSAMN 68 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------------HHCCCCCHHHHHHHHHHhCCC-ccHHHHHHHHHHHH
Confidence 3344555555555555444 44433 233568899999999999999 89999999887764
No 42
>PF10955 DUF2757: Protein of unknown function (DUF2757); InterPro: IPR020115 This entry contains proteins with no known function.
Probab=25.63 E-value=19 Score=29.13 Aligned_cols=33 Identities=9% Similarity=-0.036 Sum_probs=23.3
Q ss_pred cccCHHHHHHHHHhcCCCCCCHHHHHHHHhhcc
Q 018200 99 KAMHASQLKCTFELLDSNFFNERKVLEIAKGAT 131 (359)
Q Consensus 99 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (359)
++-+++.-...+..+|+.+||++|+.+|...-.
T Consensus 13 ~IG~i~~~~v~~~~LGf~~Lt~eEr~dmI~~~~ 45 (76)
T PF10955_consen 13 KIGTIDASAVDEEQLGFHHLTPEERQDMISYDE 45 (76)
T ss_pred EEEEeeccccCHhhcCcccCCHHHHhhheEEcC
Confidence 333444434445789999999999999987633
No 43
>TIGR03847 conserved hypothetical protein. The conserved hypothetical protein described here occurs as part of the trio of uncharacterized proteins common in the Actinobacteria.
Probab=24.90 E-value=1.1e+02 Score=28.45 Aligned_cols=37 Identities=32% Similarity=0.295 Sum_probs=31.8
Q ss_pred EEEEcCHHHHHHHHHHHHHHHHcCCCCCCccCccEEe
Q 018200 232 AVVTYTDELAYQQAKEADELLAQGKYLGPLHGIPYGL 268 (359)
Q Consensus 232 avi~~~~e~Al~qAk~lD~~~~~G~~~GPL~GIPisV 268 (359)
.-+.++.+.|.+-|+...+-.++|++..||.|-|+.=
T Consensus 132 lrv~lt~~~ARafa~Ra~~VVaAGRP~CPlCg~PldP 168 (177)
T TIGR03847 132 LRVRLTPGQARAFAKRARRVVAAGRPPCPLCGRPIDP 168 (177)
T ss_pred EEEEcCHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 4456788889999999999999999999999999743
No 44
>PF15211 CXCL17: VEGF co-regulated chemokine 1
Probab=24.81 E-value=36 Score=28.09 Aligned_cols=24 Identities=33% Similarity=0.699 Sum_probs=20.9
Q ss_pred cccccccccccccccccccccccc
Q 018200 28 SSRKNKNVANMSRDTCPALHFAGT 51 (359)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~ 51 (359)
..||--.|..|-...|||-||+|.
T Consensus 38 pkRk~mtv~~~PkkqCPCdh~Kg~ 61 (89)
T PF15211_consen 38 PKRKLMTVPGLPKKQCPCDHFKGN 61 (89)
T ss_pred chhcccccCCCCccCCCccccccc
Confidence 457778899999999999999984
No 45
>PF13318 DUF4089: Protein of unknown function (DUF4089)
Probab=23.54 E-value=2.4e+02 Score=20.86 Aligned_cols=26 Identities=12% Similarity=0.040 Sum_probs=22.1
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHhhccc
Q 018200 106 LKCTFELLDSNFFNERKVLEIAKGATE 132 (359)
Q Consensus 106 l~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (359)
+.++++++|+. +.++-+..+..+++.
T Consensus 2 v~~~a~llgL~-l~~~~r~~V~~n~~r 27 (50)
T PF13318_consen 2 VDQMAALLGLP-LDEEWRPGVVANFER 27 (50)
T ss_pred HHHHHHHcCCC-CCHHHHHHHHHHHHH
Confidence 46789999999 899999888888665
No 46
>PF11290 DUF3090: Protein of unknown function (DUF3090); InterPro: IPR021441 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=23.33 E-value=1.3e+02 Score=28.03 Aligned_cols=35 Identities=34% Similarity=0.362 Sum_probs=30.8
Q ss_pred EEEEcCHHHHHHHHHHHHHHHHcCCCCCCccCccE
Q 018200 232 AVVTYTDELAYQQAKEADELLAQGKYLGPLHGIPY 266 (359)
Q Consensus 232 avi~~~~e~Al~qAk~lD~~~~~G~~~GPL~GIPi 266 (359)
.-+.++...|.+-|+...+-.++|++..||.|-|+
T Consensus 130 lrv~lt~~~ARafa~ra~~VVaAGRP~CPlCg~Pl 164 (171)
T PF11290_consen 130 LRVRLTPGQARAFARRAREVVAAGRPPCPLCGEPL 164 (171)
T ss_pred EEEEcCHHHHHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 45567888999999999999999999999999996
No 47
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=21.60 E-value=1.3e+02 Score=21.09 Aligned_cols=34 Identities=9% Similarity=0.187 Sum_probs=27.5
Q ss_pred ccccCHHHHHHHHHhcCCC-CCCHHHHHHHHhhccc
Q 018200 98 EKAMHASQLKCTFELLDSN-FFNERKVLEIAKGATE 132 (359)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~ 132 (359)
+-.++.++|..+...+|+. + +++|++.+...+..
T Consensus 2 ~G~i~~~~~~~~l~~~g~~~~-s~~e~~~l~~~~D~ 36 (54)
T PF13833_consen 2 DGKITREEFRRALSKLGIKDL-SEEEVDRLFREFDT 36 (54)
T ss_dssp SSEEEHHHHHHHHHHTTSSSS-CHHHHHHHHHHHTT
T ss_pred cCEECHHHHHHHHHHhCCCCC-CHHHHHHHHHhccc
Confidence 3467889999999888988 6 99999888877543
No 48
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=21.35 E-value=33 Score=24.13 Aligned_cols=20 Identities=35% Similarity=0.503 Sum_probs=17.0
Q ss_pred CCHHHHHHHHHcCCCCHHHH
Q 018200 196 MSVLELGALIRTKQITSEEL 215 (359)
Q Consensus 196 ~si~eL~~lL~sg~iT~~eV 215 (359)
.|..+|.+++++|+|++..+
T Consensus 14 ~s~~el~~l~~~g~i~~~tl 33 (45)
T PF14237_consen 14 FSLEELRQLISSGEIDPDTL 33 (45)
T ss_pred cCHHHHHHHHHcCCCCCCCe
Confidence 57899999999999987654
No 49
>KOG1212 consensus Amidases [Translation, ribosomal structure and biogenesis; Lipid transport and metabolism; Signal transduction mechanisms]
Probab=20.88 E-value=62 Score=35.15 Aligned_cols=60 Identities=15% Similarity=0.027 Sum_probs=41.2
Q ss_pred cCCCCCchHHHHHHHHHCCCeEEEecCC--CCcCCCCCCCCCcCCCCCCCCCCCCCCChhHH
Q 018200 287 KNQVLNTEAWVYKRLKSAGAVLVAKLVS--GSLAYDDIWFGGRTRNPWNIEEFSTGSSAGPA 346 (359)
Q Consensus 287 ~~~~~~~DA~vV~rLr~AGAIilGKTn~--~ela~~~~~~~G~T~NPwn~~~~~GGSSgGSA 346 (359)
..+.+.-++.-...|..+|+.++|-.+- +++-+-...-|....+|......-+|++++..
T Consensus 196 ~~rt~GGSSGGEaALigaggS~lGiGsDigGSiRiPa~f~Gl~GlKPT~~r~~~~G~~~~~~ 257 (560)
T KOG1212|consen 196 LSRTPGGSSGGEAALLGAGGSLLGIGSDIGGSIRIPAAFCGLFGLKPTPGRVSVKGHHPSVP 257 (560)
T ss_pred ccCCCCCCchHHHHHHhCCcceeccccccCCceeechhhccccccCCCCCeeeecCcCCCCC
Confidence 3466788899999999999999997753 33322222223557788887777777766643
Done!