Query 018200
Match_columns 359
No_of_seqs 258 out of 1317
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 11:30:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018200.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018200hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ip4_A Glutamyl-tRNA(Gln) amid 100.0 1.8E-46 6.2E-51 381.6 16.3 167 192-359 2-172 (485)
2 2dc0_A Probable amidase; struc 100.0 3.7E-45 1.3E-49 367.7 17.9 161 196-359 1-165 (434)
3 1m22_A Peptide amidase, PAM; e 100.0 2.7E-45 9.3E-50 374.5 15.2 167 191-359 6-183 (503)
4 3h0l_A Glutamyl-tRNA(Gln) amid 100.0 3.4E-44 1.2E-48 364.9 12.9 161 193-359 2-165 (478)
5 3a2q_A 6-aminohexanoate-cyclic 100.0 1.6E-43 5.6E-48 360.3 12.4 159 191-359 4-168 (493)
6 3kfu_E Glutamyl-tRNA(Gln) amid 100.0 2.6E-43 8.8E-48 358.1 8.8 156 196-359 1-159 (471)
7 3ppm_A Fatty-acid amide hydrol 100.0 5.1E-42 1.8E-46 356.4 11.1 162 190-359 65-229 (573)
8 1o9p_A Malonamidase E2; malona 100.0 2.4E-41 8.3E-46 338.3 11.0 148 196-359 2-149 (414)
9 2gi3_A Glutamyl-tRNA(Gln) amid 100.0 7.9E-42 2.7E-46 346.6 4.3 153 191-359 5-160 (476)
10 3a1k_A Amidase; AS family enzy 100.0 6.6E-37 2.2E-41 314.5 11.4 184 97-359 2-189 (521)
11 3ip4_C Aspartyl/glutamyl-tRNA( 70.3 6.6 0.00023 31.5 5.2 43 100-144 3-45 (100)
12 3h0l_C Glutamyl-tRNA(Gln) amid 68.2 5.8 0.0002 31.5 4.4 42 101-144 2-43 (94)
13 3kfu_G Glutamyl-tRNA(Gln) amid 65.9 4.4 0.00015 32.1 3.3 43 100-144 5-47 (92)
14 3shg_B VBHA; ampylation, adeny 30.9 58 0.002 24.3 4.0 28 198-225 32-59 (61)
15 2lz1_A Nuclear factor erythroi 26.2 58 0.002 26.1 3.5 32 186-217 33-64 (90)
16 1skn_P DNA-binding domain of S 23.4 1.2E+02 0.004 24.4 4.8 34 186-219 29-62 (92)
17 2lv7_A Calcium-binding protein 21.4 54 0.0019 25.3 2.6 31 99-130 51-81 (100)
18 2zet_C Melanophilin; complex, 21.2 57 0.002 28.1 2.9 23 110-132 9-31 (153)
No 1
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: c.117.1.1 PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A
Probab=100.00 E-value=1.8e-46 Score=381.64 Aligned_cols=167 Identities=30% Similarity=0.425 Sum_probs=160.6
Q ss_pred hhccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCceEEEEcCHHHHHHHHHHHHHHH-HcCCCCCCccCccEEeec
Q 018200 192 DIAFMSVLELGALIRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADELL-AQGKYLGPLHGIPYGLKD 270 (359)
Q Consensus 192 ~i~~~si~eL~~lL~sg~iT~~eVv~a~L~Ri~~~n~~lNavi~~~~e~Al~qAk~lD~~~-~~G~~~GPL~GIPisVKD 270 (359)
++.++++.+|+++|++|++|++||+++|++||+++|+.+|||+++++|+|+++|+++|+++ ++|+. ||||||||+|||
T Consensus 2 ~l~~~~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~~d~~~~~~g~~-gpL~GvPi~vKD 80 (485)
T 3ip4_A 2 SIRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQAKDQMD-GKLFGIPMGIKD 80 (485)
T ss_dssp CGGGCCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHTTCCC-STTTTCEEEEET
T ss_pred CcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCceEEEEECHHHHHHHHHHHHHHHHhcCCC-CCcCCCEEEEEc
Confidence 4778999999999999999999999999999999999999999999999999999999998 88988 999999999999
Q ss_pred ccccCCCcCccCcccccCCCCCchHHHHHHHHHCCCeEEEecCCCCcCCC---CCCCCCcCCCCCCCCCCCCCCChhHHH
Q 018200 271 IIAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAKLVSGSLAYD---DIWFGGRTRNPWNIEEFSTGSSAGPAA 347 (359)
Q Consensus 271 ~i~vkG~pTT~GS~~l~~~~~~~DA~vV~rLr~AGAIilGKTn~~ela~~---~~~~~G~T~NPwn~~~~~GGSSgGSAA 347 (359)
+|+++|++||+||..+.++++.+||++|+||+++|||++|||||+||+++ .+..||+|+||||++++|||||||||+
T Consensus 81 ~~~v~G~~tt~Gs~~~~~~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~t~n~~~G~t~NP~~~~~~pGGSSgGsAa 160 (485)
T 3ip4_A 81 NIITNGLETTCASKMLEGFVPIYESTVMEKLHKENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAA 160 (485)
T ss_dssp TBCBTTBCCCTTSGGGTTCCCSSCCHHHHHHHHTTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHHHH
T ss_pred CcccCCCccCCCChhhcCCCCCCCcHHHHHHHHCCCEEEEecCCcccccCCCCCCCCCCCcCCccccCcCCCCCccHHHH
Confidence 99999999999999999999999999999999999999999999999986 345679999999999999999999999
Q ss_pred HHHcCCcccccC
Q 018200 348 CTSAGILLFSYC 359 (359)
Q Consensus 348 aVAaG~vp~AIG 359 (359)
+||+|++|+|||
T Consensus 161 aVAag~~~~alG 172 (485)
T 3ip4_A 161 AVAAGLVPLSLG 172 (485)
T ss_dssp HHHTTSCSEEEE
T ss_pred HhhcCCCceeee
Confidence 999999999997
No 2
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus}
Probab=100.00 E-value=3.7e-45 Score=367.68 Aligned_cols=161 Identities=32% Similarity=0.380 Sum_probs=154.4
Q ss_pred CCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCceEEEEcCHHHHHHHHHHHHHHHHcCCCCCCccCccEEeecccccC
Q 018200 196 MSVLELGALIRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADELLAQGKYLGPLHGIPYGLKDIIAVP 275 (359)
Q Consensus 196 ~si~eL~~lL~sg~iT~~eVv~a~L~Ri~~~n~~lNavi~~~~e~Al~qAk~lD~~~~~G~~~GPL~GIPisVKD~i~vk 275 (359)
+++.+|+++|++|++|++||+++|++||+++|+ +|+|+++++|+|+++|+++|+++++|+..||||||||+|||+|+++
T Consensus 1 ~~~~~l~~~~~~g~~s~~el~~a~l~ri~~~~~-lna~~~~~~~~Al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~ 79 (434)
T 2dc0_A 1 MDLLEAKRLLETGRTTPLALLEEALERAKAFQD-RNALAYLDEEAARKEALALTEELRRGQVRGPLHGLPLTVKDLFPVK 79 (434)
T ss_dssp CCHHHHHHHHHTTSCCHHHHHHHHHHHHHHTGG-GCCEEEECHHHHHHHHHHHHHHHHTTCCCSTTTTCEEEEETTSCBT
T ss_pred CCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-CcEEEEcCHHHHHHHHHHHHHHHhcCCCCCCcCCeeEEEEeccccC
Confidence 478999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred CCcCccCcccccCCCC-CchHHHHHHHHHCCCeEEEecCCCCcCCC---CCCCCCcCCCCCCCCCCCCCCChhHHHHHHc
Q 018200 276 QYKTTWGSTTFKNQVL-NTEAWVYKRLKSAGAVLVAKLVSGSLAYD---DIWFGGRTRNPWNIEEFSTGSSAGPAACTSA 351 (359)
Q Consensus 276 G~pTT~GS~~l~~~~~-~~DA~vV~rLr~AGAIilGKTn~~ela~~---~~~~~G~T~NPwn~~~~~GGSSgGSAAaVAa 351 (359)
|++||+||..+ +++ .+||++|+||+++|||++|||||+||+++ .+..||+|+||||+++++||||||||++||+
T Consensus 80 G~~tt~Gs~~~--~~~a~~dA~vV~rL~~aGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAaaVAa 157 (434)
T 2dc0_A 80 GMPTRAGTKAP--LPPLPEEARAVRRLREAGALLFAKTNMHEIALGITGENPWTGPVRNAVDPSRQAGGSSGGSAVAVAL 157 (434)
T ss_dssp TBCCCTTCSSC--CCCCCSSCHHHHHHHHTTCEEEEEECCSGGGCCSSCCCTTTCCCBCSSCTTBBCCSSSHHHHHHHHH
T ss_pred CcccCCCCccc--CCCCCCCHHHHHHHHHCCCEEEEEeChhHHhcCCCCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHc
Confidence 99999999999 667 89999999999999999999999999986 3456899999999999999999999999999
Q ss_pred CCcccccC
Q 018200 352 GILLFSYC 359 (359)
Q Consensus 352 G~vp~AIG 359 (359)
|++|+|||
T Consensus 158 g~~~~alG 165 (434)
T 2dc0_A 158 GIGLASLG 165 (434)
T ss_dssp TSSSCEEE
T ss_pred CCCceeee
Confidence 99999997
No 3
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A*
Probab=100.00 E-value=2.7e-45 Score=374.47 Aligned_cols=167 Identities=32% Similarity=0.450 Sum_probs=158.7
Q ss_pred hhhccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC---CCceEEEEcCHHHHHHHHHHHHHHHHcCCCCCCccCccEE
Q 018200 191 EDIAFMSVLELGALIRTKQITSEELTRIFLKRLKRYN---PALEAVVTYTDELAYQQAKEADELLAQGKYLGPLHGIPYG 267 (359)
Q Consensus 191 ~~i~~~si~eL~~lL~sg~iT~~eVv~a~L~Ri~~~n---~~lNavi~~~~e~Al~qAk~lD~~~~~G~~~GPL~GIPis 267 (359)
.++.++++.+|+++|++|++|++||+++|++||+++| +.+|||+++++| |+++|+++|+++++|+..||||||||+
T Consensus 6 ~~~~~~~~~~l~~~l~~g~~s~~el~~a~l~ri~~~~~~~~~lna~~~~~~~-Al~~A~~~d~~~~~g~~~gpL~GvPi~ 84 (503)
T 1m22_A 6 FPYAETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPD-ALKEAAERDRERRDGRLRGPLHGIPLL 84 (503)
T ss_dssp CTTTTCCHHHHHHHHHTTSCCHHHHHHHHHHHHHHHTTSTTCCCCEEEECTT-HHHHHHHHHHHHHTTCCCSTTTTCEEE
T ss_pred CCcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCceEEEEECCHH-HHHHHHHHHHHHHcCCCCCCcCCceeE
Confidence 3577789999999999999999999999999999999 899999999998 999999999999999989999999999
Q ss_pred eecccccCCCcCccCcccccCCCCCchHHHHHHHHHCCCeEEEecCCCCcCC-----C---CCCCCCcCCCCCCCCCCCC
Q 018200 268 LKDIIAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAKLVSGSLAY-----D---DIWFGGRTRNPWNIEEFST 339 (359)
Q Consensus 268 VKD~i~vkG~pTT~GS~~l~~~~~~~DA~vV~rLr~AGAIilGKTn~~ela~-----~---~~~~~G~T~NPwn~~~~~G 339 (359)
|||||+++|++||+||..+.++++ +||++|+||+++|||++|||||+||++ + .+..||+|+||||+++++|
T Consensus 85 vKD~~~v~G~~Tt~Gs~~~~~~~~-~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~~~~~~n~~~G~t~NP~~~~~~pG 163 (503)
T 1m22_A 85 LKDNINAAPMATSAGSLALQGFRP-DDAYLVRRLRDAGAVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRISHSPC 163 (503)
T ss_dssp EETTBCCTTSCCCTTCGGGTTCCC-CCCHHHHHHHHTTCEEEEEECCSHHHHCSCTTCCTTEETTTEECCCTTSTTBCCC
T ss_pred eecccccCCCCcCCCCHhhcCCCC-CCcHHHHHHHHCCCEEEeccCHHHHhcccCCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 999999999999999999999999 999999999999999999999999986 2 2346799999999999999
Q ss_pred CCChhHHHHHHcCCcccccC
Q 018200 340 GSSAGPAACTSAGILLFSYC 359 (359)
Q Consensus 340 GSSgGSAAaVAaG~vp~AIG 359 (359)
||||||||+||+|++++|||
T Consensus 164 GSSgGsAaAVAag~~~~alG 183 (503)
T 1m22_A 164 GSSSGSAVAVAANLASVAIG 183 (503)
T ss_dssp SSSHHHHHHHHTTSSSEEEE
T ss_pred ccHHHHHHHHHcCCCceeee
Confidence 99999999999999999997
No 4
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A*
Probab=100.00 E-value=3.4e-44 Score=364.92 Aligned_cols=161 Identities=32% Similarity=0.349 Sum_probs=153.3
Q ss_pred hccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCceEEEEcCHHHHHHHHHHHHHHHHcCCCCCCccCccEEeeccc
Q 018200 193 IAFMSVLELGALIRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADELLAQGKYLGPLHGIPYGLKDII 272 (359)
Q Consensus 193 i~~~si~eL~~lL~sg~iT~~eVv~a~L~Ri~~~n~~lNavi~~~~e~Al~qAk~lD~~~~~G~~~GPL~GIPisVKD~i 272 (359)
+.++++.+|+++|++|++|++||+++|++||+++|+.+|||+++++|+|+++|+++|++ .||||||||+|||+|
T Consensus 2 l~~~sa~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~~d~~------~gpL~GvPi~vKD~~ 75 (478)
T 3h0l_A 2 LWKKSLSELRELLKRGEVSPKEVVESFYDRYNQTEEKVKAYITPLYGKALKQAESLKER------ELPLFGIPIAVKDNI 75 (478)
T ss_dssp CTTSCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHTCCCT------TSTTTTCEEEEETTB
T ss_pred CCcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCcCcEEEEeChHHHHHHHHhhchh------cCCcCCceEEEEcCc
Confidence 45689999999999999999999999999999999999999999999999999988864 689999999999999
Q ss_pred ccCCCcCccCcccccCCCCCchHHHHHHHHHCCCeEEEecCCCCcCCCC---CCCCCcCCCCCCCCCCCCCCChhHHHHH
Q 018200 273 AVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAKLVSGSLAYDD---IWFGGRTRNPWNIEEFSTGSSAGPAACT 349 (359)
Q Consensus 273 ~vkG~pTT~GS~~l~~~~~~~DA~vV~rLr~AGAIilGKTn~~ela~~~---~~~~G~T~NPwn~~~~~GGSSgGSAAaV 349 (359)
+++|++||+||..+.++++.+||++|+||+++|||++|||||+||+++. +..||+|+||||+++++||||||||++|
T Consensus 76 ~~~G~~tt~Gs~~~~~~~~~~da~~V~rL~~aGaii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaaV 155 (478)
T 3h0l_A 76 LVEGEKTTCASKILENFVAPYDATVIERLKKAGALIVGKTNLDEFAMGSSTEYSAFFPTKNPWDLERVPGGSSGGSAASV 155 (478)
T ss_dssp CCTTSBCCTTCGGGTTCBCSSCCHHHHHHHHTTCEEEEEECCSGGGCCSSSTTCSSCCCCCTTCTTBCCCSSSHHHHHHH
T ss_pred cCCCCCcCCcCHhhcCCCCCCCHHHHHHHHHCCCEEEEEeCchhhhcCCCCCCCCCCCcCCCccCCCCCCcchHHHHHHH
Confidence 9999999999999999999999999999999999999999999999863 4567999999999999999999999999
Q ss_pred HcCCcccccC
Q 018200 350 SAGILLFSYC 359 (359)
Q Consensus 350 AaG~vp~AIG 359 (359)
|+|++|+|||
T Consensus 156 Aag~~~~a~G 165 (478)
T 3h0l_A 156 AVLSAPVSLG 165 (478)
T ss_dssp HHTSSSCEEE
T ss_pred HCCCCceeee
Confidence 9999999997
No 5
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A
Probab=100.00 E-value=1.6e-43 Score=360.31 Aligned_cols=159 Identities=26% Similarity=0.369 Sum_probs=151.3
Q ss_pred hhhccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCceEEEEcCHHHHHHHHHHHHHHHHcCCCCCCccCccEEeec
Q 018200 191 EDIAFMSVLELGALIRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADELLAQGKYLGPLHGIPYGLKD 270 (359)
Q Consensus 191 ~~i~~~si~eL~~lL~sg~iT~~eVv~a~L~Ri~~~n~~lNavi~~~~e~Al~qAk~lD~~~~~G~~~GPL~GIPisVKD 270 (359)
.++.+ ++.+|+++|++|++|++||+++|++||+++|+.+|||+++++|+|+++|++ | .||||||||+|||
T Consensus 4 ~~~~~-~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~-d--------~gpL~GvPi~vKD 73 (493)
T 3a2q_A 4 VDLWQ-DATAQAELVRSGEISRTELLEATIAHVQAVNPEINAVIIPLFEKARRESEL-A--------SGPFAGVPYLLKD 73 (493)
T ss_dssp CCTTS-CHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHH-C--------CSTTTTCEEEEES
T ss_pred hhhhh-hHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCccCeEEecCHHHHHHHhhh-c--------CCCcCCcEEEEec
Confidence 45667 999999999999999999999999999999999999999999999999988 6 4899999999999
Q ss_pred cc-ccCCCcCccCccccc--CCCCCchHHHHHHHHHCCCeEEEecCCCCcCCC---CCCCCCcCCCCCCCCCCCCCCChh
Q 018200 271 II-AVPQYKTTWGSTTFK--NQVLNTEAWVYKRLKSAGAVLVAKLVSGSLAYD---DIWFGGRTRNPWNIEEFSTGSSAG 344 (359)
Q Consensus 271 ~i-~vkG~pTT~GS~~l~--~~~~~~DA~vV~rLr~AGAIilGKTn~~ela~~---~~~~~G~T~NPwn~~~~~GGSSgG 344 (359)
+| +++|++||+||..+. ++++.+||++|+||++||||++|||||+||+++ .+..||+|+||||+++++||||||
T Consensus 74 ~~~~v~G~~Tt~Gs~~~~~~~~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgG 153 (493)
T 3a2q_A 74 LTVVSQGDINTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPEMGNQVTTEPEAWGATRNPWNLGRSVGGSSGG 153 (493)
T ss_dssp SSSCCTTSBCCTTCHHHHHHTCBCSSCCHHHHHHHHHTCEEEEEECCSGGGCSSSCCCTTTCCCCBTTBTTBCCCSSSHH
T ss_pred CCcCcCCCcccccChhhhhcCCCCCCCHHHHHHHHHCCCceEEEcChhhhhcCCCCCCCCCCCCCCCCCCCCCCCcCcHH
Confidence 99 999999999999999 999999999999999999999999999999985 345679999999999999999999
Q ss_pred HHHHHHcCCcccccC
Q 018200 345 PAACTSAGILLFSYC 359 (359)
Q Consensus 345 SAAaVAaG~vp~AIG 359 (359)
|||+||+|++++|||
T Consensus 154 sAAAVAaG~~~~alG 168 (493)
T 3a2q_A 154 SGAAVAAALSPVAHG 168 (493)
T ss_dssp HHHHHHTTSCSEEEE
T ss_pred HHHHHHcCCCceeee
Confidence 999999999999997
No 6
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Probab=100.00 E-value=2.6e-43 Score=358.10 Aligned_cols=156 Identities=29% Similarity=0.371 Sum_probs=147.8
Q ss_pred CCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCceEEEEcCHHHHHHHHHHHHHHHHcCCCCCCccCccEEeecccccC
Q 018200 196 MSVLELGALIRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADELLAQGKYLGPLHGIPYGLKDIIAVP 275 (359)
Q Consensus 196 ~si~eL~~lL~sg~iT~~eVv~a~L~Ri~~~n~~lNavi~~~~e~Al~qAk~lD~~~~~G~~~GPL~GIPisVKD~i~vk 275 (359)
|++.+|+++|++|++|++||+++|++||+++|+.+|||++++ |+|+++|+++|+++ |||||||+|||+|+++
T Consensus 1 ~~a~~l~~~~~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~-~~al~~A~~~d~~~-------pL~GvPi~vKD~~~~~ 72 (471)
T 3kfu_E 1 MLAHEIRARVARGEVSPLEVAQAYLKRVQELDPGLGAFLSLN-ERLLEEAEAVDPGL-------PLAGLVVAVKDNIATR 72 (471)
T ss_dssp -CHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEEC-CTTTHHHHTSCCSC-------TTTTCEEEEETTBCCT
T ss_pred CcHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCccEEEEeC-HHHHHHHHhcCccC-------CcCCCeEEEECCcccC
Confidence 679999999999999999999999999999999999999999 99999999887532 9999999999999999
Q ss_pred CCcCccCcccccCCCCCchHHHHHHHHHCCCeEEEecCCCCcCCC---CCCCCCcCCCCCCCCCCCCCCChhHHHHHHcC
Q 018200 276 QYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAKLVSGSLAYD---DIWFGGRTRNPWNIEEFSTGSSAGPAACTSAG 352 (359)
Q Consensus 276 G~pTT~GS~~l~~~~~~~DA~vV~rLr~AGAIilGKTn~~ela~~---~~~~~G~T~NPwn~~~~~GGSSgGSAAaVAaG 352 (359)
|++||+||..+.++++.+||++|+||+++|||++|||||+||+++ .+..||+|+||||+++++||||||||++||+|
T Consensus 73 G~~tt~Gs~~~~~~~~~~da~~V~rL~~aGaii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaaVAag 152 (471)
T 3kfu_E 73 GLRTTAGSRLLENFVPPYEATAVARLKALGALVLGKTNLDEFGMGSSTEHSAFFPTKNPFDPDRVPGGSSGGSAAALAAD 152 (471)
T ss_dssp TSCCCTTCSTTTTCCCSSCCHHHHHHHTTTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHHHHHHHTT
T ss_pred CccccccCHhHcCCCCCCChHHHHHHHHCCCEEEeecCcCchhcCCCCCCCCCCCcCCCCccCcCCCCCcHHHHHHHHCC
Confidence 999999999999999999999999999999999999999999986 34567999999999999999999999999999
Q ss_pred CcccccC
Q 018200 353 ILLFSYC 359 (359)
Q Consensus 353 ~vp~AIG 359 (359)
++++|||
T Consensus 153 ~~~~a~G 159 (471)
T 3kfu_E 153 LAPLALG 159 (471)
T ss_dssp SCSEEEE
T ss_pred CCccccc
Confidence 9999997
No 7
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A*
Probab=100.00 E-value=5.1e-42 Score=356.36 Aligned_cols=162 Identities=22% Similarity=0.272 Sum_probs=149.9
Q ss_pred hhhhccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCceEEEEcCHHHHHHHHHHHHHHHHcCCCCCCccCccEEee
Q 018200 190 EEDIAFMSVLELGALIRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADELLAQGKYLGPLHGIPYGLK 269 (359)
Q Consensus 190 ~~~i~~~si~eL~~lL~sg~iT~~eVv~a~L~Ri~~~n~~lNavi~~~~e~Al~qAk~lD~~~~~G~~~GPL~GIPisVK 269 (359)
..+|..+++.+|+++|++|++|++||+++|++||+++|+.+||++++.+| ++++|+++++ .||||||||+||
T Consensus 65 ~~~i~~~~~~~l~~~l~~g~~s~~ev~~a~l~ri~~~~~~~na~~~~~~~-a~~~a~~~~~-------~gpL~GvPi~vK 136 (573)
T 3ppm_A 65 SEALLTLPLLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTD-CETQLSQAPR-------QGLLYGVPVSLK 136 (573)
T ss_dssp HHHHHHSCHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHCCEEEECTT-HHHHHHHCCT-------TCTTTTCEEEEE
T ss_pred hhhhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCccCEEEEECHH-HHHHHHhhhh-------cCCcCCCeEEEE
Confidence 57899999999999999999999999999999999999999999999876 5566654432 389999999999
Q ss_pred cccccCCCcCccCcccccCCCCCchHHHHHHHHHCCCeEEEecCCCCcCCCC---CCCCCcCCCCCCCCCCCCCCChhHH
Q 018200 270 DIIAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAKLVSGSLAYDD---IWFGGRTRNPWNIEEFSTGSSAGPA 346 (359)
Q Consensus 270 D~i~vkG~pTT~GS~~l~~~~~~~DA~vV~rLr~AGAIilGKTn~~ela~~~---~~~~G~T~NPwn~~~~~GGSSgGSA 346 (359)
|||+++|++||+||..+.++++.+||++|++|+++|||++|||||+||+++. +..||+|+||||++++|||||||||
T Consensus 137 D~~~~~G~~tt~Gs~~~~~~~~~~da~vV~~L~~aGAv~~gKTn~pe~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsa 216 (573)
T 3ppm_A 137 ECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMFSYDCSNPLFGQTMNPWKSSKSPGGSSGGEG 216 (573)
T ss_dssp TTBCCBTCCCCTTCGGGTTCCBSSCCHHHHHHHHTTCEEEEEECCCTTSCSSSCEETTTEECCCTTCTTBCCCSSSHHHH
T ss_pred cccCCCCCCcCCcChhhcCCCCCcchHHHHHHHHCCCEEEEecCCccccccCCCCCCCCCCcCCCCCCCCCCCCCCchHH
Confidence 9999999999999999999999999999999999999999999999998763 3467999999999999999999999
Q ss_pred HHHHcCCcccccC
Q 018200 347 ACTSAGILLFSYC 359 (359)
Q Consensus 347 AaVAaG~vp~AIG 359 (359)
|+||+|++++|+|
T Consensus 217 aaVAag~~~~alG 229 (573)
T 3ppm_A 217 ALIGSGGSPLGLG 229 (573)
T ss_dssp HHHHTTSCSEEEE
T ss_pred HHHHcCCCcEEEe
Confidence 9999999999997
No 8
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A
Probab=100.00 E-value=2.4e-41 Score=338.33 Aligned_cols=148 Identities=27% Similarity=0.353 Sum_probs=140.5
Q ss_pred CCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCceEEEEcCHHHHHHHHHHHHHHHHcCCCCCCccCccEEeecccccC
Q 018200 196 MSVLELGALIRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADELLAQGKYLGPLHGIPYGLKDIIAVP 275 (359)
Q Consensus 196 ~si~eL~~lL~sg~iT~~eVv~a~L~Ri~~~n~~lNavi~~~~e~Al~qAk~lD~~~~~G~~~GPL~GIPisVKD~i~vk 275 (359)
+++.+|+++|++|++|++||+++|++||+++|+.+|||+++++|+| + +..||||||||+|||+|+++
T Consensus 2 ~~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~a-~------------~~~gpL~GvPi~vKD~~~v~ 68 (414)
T 1o9p_A 2 ISLADLQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKSAR-A------------QASGPLRGIAVGIKDIIDTA 68 (414)
T ss_dssp CCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECTTCC-C------------CSSSTTTTCEEEEETTBCCS
T ss_pred CCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCccccEEEEeCHHHh-c------------ccCCCcCCCEEEEEcccccC
Confidence 5899999999999999999999999999999999999999998866 2 34699999999999999999
Q ss_pred CCcCccCcccccCCCCCchHHHHHHHHHCCCeEEEecCCCCcCCCCCCCCCcCCCCCCCCCCCCCCChhHHHHHHcCCcc
Q 018200 276 QYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAKLVSGSLAYDDIWFGGRTRNPWNIEEFSTGSSAGPAACTSAGILL 355 (359)
Q Consensus 276 G~pTT~GS~~l~~~~~~~DA~vV~rLr~AGAIilGKTn~~ela~~~~~~~G~T~NPwn~~~~~GGSSgGSAAaVAaG~vp 355 (359)
|++||+||..|.++++.+||++|+||+++|||++|||||+||++.+ . |+|+||||+++++||||||||++||+|+++
T Consensus 69 G~~tt~Gs~~~~~~~~~~dA~~V~rL~~aGAii~GKTn~~Efa~~n-~--G~t~NP~~~~~~pGGSSgGsAaaVAag~~~ 145 (414)
T 1o9p_A 69 NMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTTTTAFASRD-P--TATLNPHNTGHSPGGASSGSAAAVGAGMIP 145 (414)
T ss_dssp SSCCCTTSGGGTTCCCSSCCHHHHHHHHTTCEEEEEECCCGGGSSC-C--CSCCBTTBTTBCCCSSSHHHHHHHHTTSCS
T ss_pred CcccCcCCHhhccCCCCCCHHHHHHHHHCCCEEEEecCCchhhcCC-C--CCCCCCCCCCCCCCcchHHHHHHHHcCCCc
Confidence 9999999999999999999999999999999999999999999843 3 999999999999999999999999999999
Q ss_pred cccC
Q 018200 356 FSYC 359 (359)
Q Consensus 356 ~AIG 359 (359)
+|||
T Consensus 146 ~alG 149 (414)
T 1o9p_A 146 LALG 149 (414)
T ss_dssp EEEE
T ss_pred eEEe
Confidence 9997
No 9
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A*
Probab=100.00 E-value=7.9e-42 Score=346.57 Aligned_cols=153 Identities=29% Similarity=0.424 Sum_probs=143.3
Q ss_pred hhhccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCceEEEEcCHHHHHHHHHHHHHHHHcCCCCCCccCccEEeec
Q 018200 191 EDIAFMSVLELGALIRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADELLAQGKYLGPLHGIPYGLKD 270 (359)
Q Consensus 191 ~~i~~~si~eL~~lL~sg~iT~~eVv~a~L~Ri~~~n~~lNavi~~~~e~Al~qAk~lD~~~~~G~~~GPL~GIPisVKD 270 (359)
.++..+++.+| |++|++|++||+++|++||+++|+.+|||+++++|+|+ |+ . ||||||||+|||
T Consensus 5 ~~~~~~s~~~l---i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~al------d~------~-gpL~GvPi~vKD 68 (476)
T 2gi3_A 5 LDFRKLTIEEC---LKLSEEEREKLPQLSLETIKRLDPHVKAFISVRENVSV------EK------K-GKFWGIPVAIKD 68 (476)
T ss_dssp SCGGGCCHHHH---TTSCHHHHTTHHHHHHHHHHHHHHHHCCEEEECCCCCC------CC------C-STTTTCEEEEET
T ss_pred cccccCCHHHH---HHcCCCCHHHHHHHHHHHHHHhCCceeEEEecChhhhh------hc------c-CCcCCceEEEEc
Confidence 46777899999 99999999999999999999999999999999988776 21 2 899999999999
Q ss_pred ccccCCCcCccCcccccCCCCCchHHHHHHHHHCCCeEEEecCCCCcCCC---CCCCCCcCCCCCCCCCCCCCCChhHHH
Q 018200 271 IIAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAKLVSGSLAYD---DIWFGGRTRNPWNIEEFSTGSSAGPAA 347 (359)
Q Consensus 271 ~i~vkG~pTT~GS~~l~~~~~~~DA~vV~rLr~AGAIilGKTn~~ela~~---~~~~~G~T~NPwn~~~~~GGSSgGSAA 347 (359)
+|+++|++||+||..+.++++.+||++|+||++||||++|||||+||+++ .+..||+|+||||+++++|||||||||
T Consensus 69 ~~~v~G~~Tt~Gs~~~~~~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAa 148 (476)
T 2gi3_A 69 NILTLGMRTTCASRILENYESVFDATVVKKMKEAGFVVVGKANLDEFAMGSSTERSAFFPTRNPWDLERVPGGSSGGSAA 148 (476)
T ss_dssp TBCCSSSCCCTTCGGGTTCCCCSCCHHHHHHHHHTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHHHH
T ss_pred CccCCCCccCccChhhcCCCCCCChHHHHHHHHCCCEEEEecCchhhhcCCCCCCCCCCCCCCCCCCCCCCCcchHHHHH
Confidence 99999999999999999999999999999999999999999999999986 345689999999999999999999999
Q ss_pred HHHcCCcccccC
Q 018200 348 CTSAGILLFSYC 359 (359)
Q Consensus 348 aVAaG~vp~AIG 359 (359)
+||+|++++|||
T Consensus 149 AVAag~~~~alG 160 (476)
T 2gi3_A 149 AVSAGMVVAALG 160 (476)
T ss_dssp HHHTTSSSEEEE
T ss_pred HHHcCCCceEee
Confidence 999999999997
No 10
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A
Probab=100.00 E-value=6.6e-37 Score=314.48 Aligned_cols=184 Identities=22% Similarity=0.207 Sum_probs=153.7
Q ss_pred cccccCHHHHHHHHHhcCCCCCCHHHHHHHHhhccccChhHHHHHhhhh-hccCCCCCCCCccccCCCCCCccccccccc
Q 018200 97 SEKAMHASQLKCTFELLDSNFFNERKVLEIAKGATEFNLPIIRANRKLI-ASENGGLHNPSVLTFNPDWGTEQEQEASKI 175 (359)
Q Consensus 97 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~f~p~~~~~~~~~~~~~ 175 (359)
+.+.+|.++|+..++.++.. ++++|+++|.+.++. .++.|+.++.+. +. . ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--------~-----------------~~ 54 (521)
T 3a1k_A 2 ATIRPDDKAIDAAARHYGIT-LDKTARLEWPALIDG-ALGSYDVVDQLYADE--------A-----------------TP 54 (521)
T ss_dssp CCCCCCHHHHHHHHHHTTCC-CCTTHHHHHHHHHHH-HTHHHHHHHHHHHHH--------S-----------------CC
T ss_pred CCCCCCHHHHHHHHHHHhcc-cchhhHHHHHHHHHH-HHHHHHHHHhhhccc--------c-----------------cc
Confidence 35678999999999999999 899999999999998 589999999885 21 1 01
Q ss_pred ccCCCCCCCCCCCChhhhccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCceEEEEcCHHHHHHHHHHHHHHHHcC
Q 018200 176 FNYPSISDIQKPENEEDIAFMSVLELGALIRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADELLAQG 255 (359)
Q Consensus 176 ~~~p~~~g~~~p~~~~~i~~~si~eL~~lL~sg~iT~~eVv~a~L~Ri~~~n~~lNavi~~~~e~Al~qAk~lD~~~~~G 255 (359)
..+++. ...|..+ ++.+|+|..... .+|
T Consensus 55 ~~~~~~--~~~~~~~------------------------------------~~~~~a~~~~~~--------------~~g 82 (521)
T 3a1k_A 55 PTTSRE--HAVPSAS------------------------------------ENPLSAWYVTTS--------------IPP 82 (521)
T ss_dssp CCCCCC--EECCCTT------------------------------------TCTTSCEEEEEE--------------ECC
T ss_pred cCchhh--hhccccc------------------------------------cchhhhhHHHHh--------------hcC
Confidence 122222 1133322 345677764432 246
Q ss_pred CCCCCccCccEEeecccccCCCcCccCcccccCCCCCchHHHHHHHHHCCCeEEEecCCCCcCCCC---CCCCCcCCCCC
Q 018200 256 KYLGPLHGIPYGLKDIIAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAKLVSGSLAYDD---IWFGGRTRNPW 332 (359)
Q Consensus 256 ~~~GPL~GIPisVKD~i~vkG~pTT~GS~~l~~~~~~~DA~vV~rLr~AGAIilGKTn~~ela~~~---~~~~G~T~NPw 332 (359)
+..||||||||+|||||+++|++||+||..+.++++.+||++|+||++||||++|||||+||+++. +..||+|+|||
T Consensus 83 ~~~gpL~GvPi~vKD~i~v~G~~Tt~Gs~~~~~~~~~~DA~vV~rLr~AGAvilGKTn~~Efa~~~~~~n~~~G~t~NP~ 162 (521)
T 3a1k_A 83 TSDGVLTGRRVAIKDNVTVAGVPMMNGSRTVEGFTPSRDATVVTRLLAAGATVAGKAVCEDLCFSGSSFTPASGPVRNPW 162 (521)
T ss_dssp SSCCTTTTCEEEEETTBCCTTSCBCTTCTTTTTBCCSSCCHHHHHHHHTTCEEEEEECCCGGGCCSSSSCCTTCCCEETT
T ss_pred CCCCCCCCCEEEEEcCcccCCcccCCCChhhcCCCCCCchHHHHHHHHCCCEEEEeeChhhHhhCCCCCCCCCCCcCCCC
Confidence 678999999999999999999999999999999999999999999999999999999999999863 45679999999
Q ss_pred CCCCCCCCCChhHHHHHHcCCcccccC
Q 018200 333 NIEEFSTGSSAGPAACTSAGILLFSYC 359 (359)
Q Consensus 333 n~~~~~GGSSgGSAAaVAaG~vp~AIG 359 (359)
|+++++|||||||||+||+|++++|||
T Consensus 163 ~~~~~pGGSSgGSAAAVAag~~~~alG 189 (521)
T 3a1k_A 163 DRQREAGGSSGGSAALVANGDVDFAIG 189 (521)
T ss_dssp EEEEECCSSSHHHHHHHHTTSSSEEEE
T ss_pred CCCCCCCCCCchHHHHHhcCCcceecc
Confidence 999999999999999999999999997
No 11
>3ip4_C Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: a.137.12.1 PDB: 2df4_C 2dqn_C* 2g5h_C 2g5i_C* 2f2a_C
Probab=70.27 E-value=6.6 Score=31.54 Aligned_cols=43 Identities=12% Similarity=0.155 Sum_probs=38.2
Q ss_pred ccCHHHHHHHHHhcCCCCCCHHHHHHHHhhccccChhHHHHHhhh
Q 018200 100 AMHASQLKCTFELLDSNFFNERKVLEIAKGATEFNLPIIRANRKL 144 (359)
Q Consensus 100 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (359)
.+|.++++..+++.-+. |+++|++.|.+.++.+ +..++.+.++
T Consensus 3 ~i~~e~v~~iA~LArL~-l~eeE~~~~~~~l~~I-l~~ve~L~ev 45 (100)
T 3ip4_C 3 KVTREEVEHIANLARLQ-ISPEETEEMANTLESI-LDFAKQNDSA 45 (100)
T ss_dssp CCCHHHHHHHHHHTTCC-CCHHHHHHHHHHHHHH-HHHHGGGGGS
T ss_pred CCCHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHH-HHHHHHHhhc
Confidence 46899999999999999 8999999999999984 7777777777
No 12
>3h0l_C Glutamyl-tRNA(Gln) amidotransferase subunit C; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_C 3h0r_C*
Probab=68.24 E-value=5.8 Score=31.47 Aligned_cols=42 Identities=14% Similarity=0.173 Sum_probs=37.1
Q ss_pred cCHHHHHHHHHhcCCCCCCHHHHHHHHhhccccChhHHHHHhhh
Q 018200 101 MHASQLKCTFELLDSNFFNERKVLEIAKGATEFNLPIIRANRKL 144 (359)
Q Consensus 101 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (359)
+|.++++..+++.-+. |+++|++.|.+.++.+ +..++.+.++
T Consensus 2 i~~e~v~~iA~LArL~-l~eee~~~~~~~l~~I-l~~ve~L~ev 43 (94)
T 3h0l_C 2 VDREWVLKIAKLARLE-LKEEEIEVFQKQLSDI-LDFIDQLKEL 43 (94)
T ss_dssp CCHHHHHHHHHHTTCC-CCHHHHHHHHHHHHHH-HHHTTTGGGS
T ss_pred CCHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHH-HHHHHHHhcc
Confidence 6889999999999999 8999999999999984 7777777776
No 13
>3kfu_G Glutamyl-tRNA(Gln) amidotransferase subunit C; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Probab=65.92 E-value=4.4 Score=32.12 Aligned_cols=43 Identities=9% Similarity=0.108 Sum_probs=37.9
Q ss_pred ccCHHHHHHHHHhcCCCCCCHHHHHHHHhhccccChhHHHHHhhh
Q 018200 100 AMHASQLKCTFELLDSNFFNERKVLEIAKGATEFNLPIIRANRKL 144 (359)
Q Consensus 100 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (359)
.++.++++..+++.-+. |+++|++.|.+.++.+ +..++.+.++
T Consensus 5 ~i~~e~V~~iA~LArL~-l~eeE~~~~~~~l~~I-l~~ve~L~ev 47 (92)
T 3kfu_G 5 ELSPELLRKLETLAKIR-LSPEEEALLLQDLKRI-LDFVDALPRV 47 (92)
T ss_dssp CCCHHHHHHHHHHTTCC-CCHHHHHHHHHHHHHH-HHHHHTCCCC
T ss_pred ccCHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHH-HHHHHHHHhc
Confidence 47899999999999999 8999999999999984 7777777776
No 14
>3shg_B VBHA; ampylation, adenylylation, toxin-antitoxin complex, FIC fold transfer, transferase-protein binding complex; HET: TLA; 1.50A {Bartonella schoenbuchensis R1}
Probab=30.94 E-value=58 Score=24.31 Aligned_cols=28 Identities=14% Similarity=0.337 Sum_probs=25.1
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 018200 198 VLELGALIRTKQITSEELTRIFLKRLKR 225 (359)
Q Consensus 198 i~eL~~lL~sg~iT~~eVv~a~L~Ri~~ 225 (359)
+.++.+.+..|++|..++++.+.+|+++
T Consensus 32 ~l~~~erwv~GEis~~e~i~~~~~r~~~ 59 (61)
T 3shg_B 32 VVAQMERVVVGELETSDVIKDLMERIKR 59 (61)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHc
Confidence 5677888999999999999999999975
No 15
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=26.17 E-value=58 Score=26.07 Aligned_cols=32 Identities=19% Similarity=0.329 Sum_probs=27.9
Q ss_pred CCCChhhhccCCHHHHHHHHHcCCCCHHHHHH
Q 018200 186 KPENEEDIAFMSVLELGALIRTKQITSEELTR 217 (359)
Q Consensus 186 ~p~~~~~i~~~si~eL~~lL~sg~iT~~eVv~ 217 (359)
.|=+.++|.++++.|+.++|+...+|.+|+.-
T Consensus 33 LPFsvdqIvnLpv~eFn~lL~~~~Lt~~Ql~l 64 (90)
T 2lz1_A 33 IPFPVEKIINLPVVDFNEMMSKEQFNEAQLAL 64 (90)
T ss_dssp CSSCHHHHHHSCHHHHHHHHHHSCCCHHHHHH
T ss_pred CCCCHHHHHHCCHHHHHHHHHHcCCCHHHHHH
Confidence 45557899999999999999999999999753
No 16
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=23.41 E-value=1.2e+02 Score=24.38 Aligned_cols=34 Identities=21% Similarity=0.241 Sum_probs=29.3
Q ss_pred CCCChhhhccCCHHHHHHHHHcCCCCHHHHHHHH
Q 018200 186 KPENEEDIAFMSVLELGALIRTKQITSEELTRIF 219 (359)
Q Consensus 186 ~p~~~~~i~~~si~eL~~lL~sg~iT~~eVv~a~ 219 (359)
.|-+.++|.++++.++.++|+...+|..++...-
T Consensus 29 lPfs~~eIv~lpv~efn~lLk~~~Ls~~Ql~~ir 62 (92)
T 1skn_P 29 LPVSAFQISEMSLSELQQVLKNESLSEYQRQLIR 62 (92)
T ss_dssp CSSCHHHHHHSCHHHHHHHHHHSCCCHHHHHHHH
T ss_pred CCCCHHHHHHCcHHHHHHHHHhCCCCHHHHHHHH
Confidence 4556789999999999999999999999886543
No 17
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=21.37 E-value=54 Score=25.27 Aligned_cols=31 Identities=16% Similarity=0.064 Sum_probs=23.0
Q ss_pred cccCHHHHHHHHHhcCCCCCCHHHHHHHHhhc
Q 018200 99 KAMHASQLKCTFELLDSNFFNERKVLEIAKGA 130 (359)
Q Consensus 99 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 130 (359)
..++.++|+.+.+.+|.. +|++|+++|...+
T Consensus 51 G~I~~~El~~~l~~lg~~-~~~~ei~~l~~~~ 81 (100)
T 2lv7_A 51 GFISKQELGTAMRSLGYM-PNEVELEVIIQRL 81 (100)
T ss_dssp SCBCHHHHHHHHHHHTCC-CCTTTHHHHHHHH
T ss_pred CcCCHHHHHHHHHHhCCC-CCHHHHHHHHHHH
Confidence 457778888888888887 6888777776654
No 18
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=21.21 E-value=57 Score=28.11 Aligned_cols=23 Identities=9% Similarity=0.001 Sum_probs=19.3
Q ss_pred HHhcCCCCCCHHHHHHHHhhccc
Q 018200 110 FELLDSNFFNERKVLEIAKGATE 132 (359)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~ 132 (359)
.+.+++.+|||+|++.+++.++.
T Consensus 9 ~~~~dLs~LteeEr~~Il~VL~R 31 (153)
T 2zet_C 9 GKRLDLSTLTDEEAEHVWAVVQR 31 (153)
T ss_dssp --CCCCTTSCHHHHHHHHHHHHH
T ss_pred ccCCCcccCCHHHHHHHHHHHHh
Confidence 46789999999999999999876
Done!