BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018202
(359 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9P2Y5|UVRAG_HUMAN UV radiation resistance-associated gene protein OS=Homo sapiens
GN=UVRAG PE=1 SV=1
Length = 699
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 87/318 (27%), Positives = 141/318 (44%), Gaps = 62/318 (19%)
Query: 38 LARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMS 97
L RL A+ Q Q QK+ I+ K SNEL++ E L+ + L+++
Sbjct: 196 LLRLHRAQCAIKQT----QVTVQKIGKEIEEKLRLTSTSNELKKKSECLQLKILVLQNEL 251
Query: 98 MRSK--VEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQ---ESNRLLAGEKGYGH-- 150
R K + +E A +++++++ + G+A S +LQ ES L E
Sbjct: 252 ERQKKALGREVALLHKQQIALQDK-----GSAFSAEHLKLQLQKESLNELRKECTAKREL 306
Query: 151 LQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAASKPVNPGSL 210
K L +R + ++S++S++YP+ + + + F G + NS + + GS+
Sbjct: 307 FLKTNAQLTIRCRQLLSELSYIYPIDL------NEHKDYFVCGVKLPNSEDFQAKDDGSI 360
Query: 211 TILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRYPLRLGGSHT 270
A ALGY AH+VS+I+ +L+VPLRYP+ GS +
Sbjct: 361 ---------------------------AVALGYTAHLVSMISFFLQVPLRYPIIHKGSRS 393
Query: 271 YINDYAPSIEPTSDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLNKDIEQLLNYI 330
I D NI K EFPL+ +G + + Y V+LLNK+I QL
Sbjct: 394 TIKD-------------NINDKLTEKEREFPLYPKGGEKLQFDYGVYLLNKNIAQLRYQH 440
Query: 331 GVKSLGPRHVLANLKELL 348
G+ + R L NLK +
Sbjct: 441 GLGTPDLRQTLPNLKNFM 458
>sp|O60149|ATG14_SCHPO Autophagy-related protein 14 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=atg14 PE=3 SV=2
Length = 474
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 69/154 (44%), Gaps = 23/154 (14%)
Query: 204 PVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRYPL 263
P N TI L L+ P DK A ++G++AH++ ++ YLE L YP+
Sbjct: 334 PGNHDEFTIRNLRLSFEP--------DKINNVEMAASIGFLAHLLQTLSKYLEKELAYPI 385
Query: 264 RLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLNKDI 323
S + I D T D+ + I FPL+ + +A++LLN+D+
Sbjct: 386 LCASSRSSILDTL-----TPDIPTRI----------FPLYPATRPIELFEHAIYLLNQDV 430
Query: 324 EQLLNYIGVKSLGPRHVLANLKELLRTIQSPEYI 357
L G+ +L N K+LL+ I S +++
Sbjct: 431 NDFLETFGLPIDQSMDILRNFKKLLQFILSGQHL 464
>sp|Q9VK07|UVRAG_DROME UV radiation resistance-associated gene protein OS=Drosophila
melanogaster GN=Uvrag PE=1 SV=1
Length = 696
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 21/123 (17%)
Query: 238 ATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKP 297
+ ALGY+AH+V ++A ++ PLR + Y PS D + +T
Sbjct: 475 SAALGYVAHLVQMLAIIMDRPLRNRIL----------YEPSKARIVDDIKELTYTTR--- 521
Query: 298 AEFPLFLEG-QDATRAAYAVFLLNKDIEQL-LNYIGVKSLGPRHVLANLKELLRTIQSPE 355
EFPL+ + + YA++LL +++ QL + G L R+ NL EL T++
Sbjct: 522 -EFPLYTRSILPSQQTKYAIYLLRQNVSQLCFDITGQCDL--RNTFGNLLELFSTLR--- 575
Query: 356 YID 358
YI+
Sbjct: 576 YIE 578
>sp|Q8R5M4|OPTN_RAT Optineurin OS=Rattus norvegicus GN=Optn PE=2 SV=3
Length = 585
Score = 35.0 bits (79), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 92/183 (50%), Gaps = 26/183 (14%)
Query: 22 DPENVKVIEWEDYDQELARLW----SLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSN 77
DPE+V IE E + ++A L+ + LS+A+ K+ LQ+K Q+L + + + N
Sbjct: 295 DPESVG-IEVETLNVQVASLFKELQEAHTKLSEAELMKKRLQEKCQALERKNSATPSELN 353
Query: 78 ELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQE 137
E +E+ R+L ++ SMRS+++ E AK +EE+ + T + K LQE
Sbjct: 354 EKQELV--YSNRKLELQVESMRSEIKMEQAKTEEEKSRL--------ATLQATHDKLLQE 403
Query: 138 SNRLL----------AGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQEL 187
N+ L A + LQ+L + L + +Q + S+ + +K + KQE++L
Sbjct: 404 HNKALRTIEELTKQQAEKVDKVQLQELSEKLELAEQALASKQLQMDEMKQTIA-KQEEDL 462
Query: 188 ESF 190
E+
Sbjct: 463 ETM 465
>sp|Q9P225|DYH2_HUMAN Dynein heavy chain 2, axonemal OS=Homo sapiens GN=DNAH2 PE=2 SV=3
Length = 4427
Score = 32.0 bits (71), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 65/141 (46%), Gaps = 10/141 (7%)
Query: 19 KAIDPENVKVIEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNE 78
+ ++P+ +++ + LA+L +AL++A +K + + +KL+ L + E L + E
Sbjct: 3211 RVVEPKRIRM------NAALAQLREKQAALAEAQEKLREVAEKLEMLKKQYDEKLAQKEE 3264
Query: 79 L----EEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKR 134
L EEM +LE +L+ ++ +E + EE L V L+A LS
Sbjct: 3265 LRKKSEEMELKLERAGMLVSGLAGEKARWEETVQGLEEDLGYLVGDCLLAAAFLSYMGPF 3324
Query: 135 LQESNRLLAGEKGYGHLQKLQ 155
L + + G + +LQ
Sbjct: 3325 LTNYRDEIVNQIWIGKIWELQ 3345
>sp|B1LJT9|MUKB_ECOSM Chromosome partition protein MukB OS=Escherichia coli (strain
SMS-3-5 / SECEC) GN=mukB PE=3 SV=1
Length = 1486
Score = 32.0 bits (71), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Query: 1 MEQRQRQRQHLQHPTSTSKAIDPENVKVIEWEDYDQEL-ARLWSLSSALSQADDKKQTL- 58
+EQR R++Q + + +N + E E QEL AR+ SLS ++S A +++ TL
Sbjct: 525 LEQRLREQQEAERLLADFCKRQGKNFDIDELEALHQELEARIASLSDSVSNAREERMTLR 584
Query: 59 --QQKLQSLIQ 67
Q++LQS IQ
Sbjct: 585 QEQEQLQSRIQ 595
>sp|B7NM50|MUKB_ECO7I Chromosome partition protein MukB OS=Escherichia coli O7:K1 (strain
IAI39 / ExPEC) GN=mukB PE=3 SV=1
Length = 1486
Score = 32.0 bits (71), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Query: 1 MEQRQRQRQHLQHPTSTSKAIDPENVKVIEWEDYDQEL-ARLWSLSSALSQADDKKQTL- 58
+EQR R++Q + + +N + E E QEL AR+ SLS ++S A +++ TL
Sbjct: 525 LEQRLREQQEAERLLADFCKRQGKNFDIDELEALHQELEARIASLSDSVSNAREERMTLR 584
Query: 59 --QQKLQSLIQ 67
Q++LQS IQ
Sbjct: 585 QEQEQLQSRIQ 595
>sp|P0C6F1|DYH2_MOUSE Dynein heavy chain 2, axonemal OS=Mus musculus GN=Dnah2 PE=2 SV=1
Length = 4456
Score = 31.6 bits (70), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 57/115 (49%), Gaps = 10/115 (8%)
Query: 19 KAIDPENVKVIEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNE 78
+ ++P+ +++ + +A+L +AL++A +K + + +KL+ L + E L + E
Sbjct: 3240 RVVEPKRIRM------NAAMAQLQEKQAALAEAQEKLREVAEKLEMLKKQYDEKLAQKEE 3293
Query: 79 L----EEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALS 129
L EEM +LE +L+ ++ +E + EE L V L+A LS
Sbjct: 3294 LRKKSEEMELKLERAGMLVSGLAGEKARWEETVQGLEEDLGYLVGDCLIAAAFLS 3348
>sp|O45420|PLHD1_CAEEL Pleckstrin homology domain-containing family D member 1
OS=Caenorhabditis elegans GN=F31D4.5 PE=3 SV=2
Length = 570
Score = 31.6 bits (70), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 66/119 (55%), Gaps = 7/119 (5%)
Query: 52 DDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQE 111
+++K++ +++L++ + + E R++EL + +E LEA R EK+ +K K+D +N +
Sbjct: 216 NEEKKSYEERLEAEAKARKEEHDRADELAKDKEELEAER---EKLIRTTKKLKDDLQNVK 272
Query: 112 ERLSME---VRSLLVAGTALSVARKRLQESNRLLAGEKGYGHLQKLQKMLRMRQQFMIS 167
L M ++L +L+ + LQ + L EK H Q LQ+++R R++ +I
Sbjct: 273 NELKMTNEMKKTLEQEKMSLNSKTEHLQANMESLNIEKEKIHEQ-LQEIVREREKVLID 330
>sp|O17071|PRS10_CAEEL Probable 26S protease regulatory subunit 10B OS=Caenorhabditis
elegans GN=rpt-4 PE=1 SV=2
Length = 406
Score = 31.6 bits (70), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 56/106 (52%), Gaps = 4/106 (3%)
Query: 18 SKAIDPENVKVIEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSN 77
+KA++ K+ E D +Q+L L S +++ DK + + LQS+ Q+ E LK+ +
Sbjct: 23 TKALNSYRRKLAECRDIEQKLKDLRKKESEMTKQFDKSENDIKSLQSVGQIVGEVLKQLS 82
Query: 78 ELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLV 123
E + + + R + + R + KE+ K Q R+S+++ +L +
Sbjct: 83 EEKFIVKATNGPRYV---VGCRRSINKEELK-QGTRVSLDMTTLTI 124
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.129 0.350
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 119,682,027
Number of Sequences: 539616
Number of extensions: 4648114
Number of successful extensions: 20630
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 740
Number of HSP's that attempted gapping in prelim test: 18524
Number of HSP's gapped (non-prelim): 2656
length of query: 359
length of database: 191,569,459
effective HSP length: 119
effective length of query: 240
effective length of database: 127,355,155
effective search space: 30565237200
effective search space used: 30565237200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)