Query 018202
Match_columns 359
No_of_seqs 173 out of 239
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 07:00:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018202.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018202hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10186 Atg14: UV radiation r 100.0 2.3E-41 5E-46 323.4 32.1 274 40-354 21-301 (302)
2 KOG2896 UV radiation resistanc 100.0 2.1E-34 4.5E-39 279.9 27.7 167 154-353 168-334 (377)
3 KOG4398 Predicted coiled-coil 99.6 9.1E-15 2E-19 138.3 15.4 160 158-354 77-274 (359)
4 PF04111 APG6: Autophagy prote 99.1 3E-08 6.4E-13 97.6 21.6 99 209-330 150-256 (314)
5 KOG2751 Beclin-like protein [S 98.3 9.6E-05 2.1E-09 74.7 21.1 95 211-329 285-384 (447)
6 COG3883 Uncharacterized protei 92.9 9.8 0.00021 37.0 17.6 82 41-125 33-114 (265)
7 PRK11637 AmiB activator; Provi 92.9 13 0.00027 38.2 19.5 41 79-119 91-131 (428)
8 PF09726 Macoilin: Transmembra 91.6 18 0.0004 39.8 19.3 31 44-74 458-488 (697)
9 PRK10869 recombination and rep 91.3 4.9 0.00011 42.8 14.4 19 105-123 320-338 (553)
10 PF11932 DUF3450: Protein of u 90.9 10 0.00022 36.1 14.8 72 44-115 26-97 (251)
11 TIGR03185 DNA_S_dndD DNA sulfu 90.5 12 0.00026 40.6 16.7 37 133-169 300-336 (650)
12 TIGR00634 recN DNA repair prot 90.5 8.1 0.00018 41.1 15.1 24 103-126 323-346 (563)
13 PF10267 Tmemb_cc2: Predicted 90.0 10 0.00023 38.9 14.7 25 237-261 344-368 (395)
14 KOG0994 Extracellular matrix g 89.6 14 0.00031 42.6 16.2 39 32-70 1518-1556(1758)
15 PF10186 Atg14: UV radiation r 89.5 20 0.00042 34.1 23.0 42 75-116 68-109 (302)
16 PF09726 Macoilin: Transmembra 88.4 42 0.00091 37.0 18.9 33 39-71 474-506 (697)
17 PRK09039 hypothetical protein; 87.9 32 0.00069 34.6 17.4 15 158-172 192-206 (343)
18 PF08317 Spc7: Spc7 kinetochor 87.5 31 0.00068 34.1 17.7 14 166-179 285-298 (325)
19 KOG2896 UV radiation resistanc 86.3 41 0.00089 34.2 18.1 100 240-356 238-340 (377)
20 TIGR01069 mutS2 MutS2 family p 86.2 31 0.00066 38.5 16.5 78 35-115 485-563 (771)
21 PRK12704 phosphodiesterase; Pr 84.5 60 0.0013 34.5 18.3 11 311-321 382-392 (520)
22 PRK09039 hypothetical protein; 84.2 49 0.0011 33.2 17.2 21 44-64 44-64 (343)
23 TIGR03185 DNA_S_dndD DNA sulfu 83.9 69 0.0015 34.7 18.6 22 46-67 391-412 (650)
24 PF10168 Nup88: Nuclear pore c 83.5 20 0.00044 39.6 13.4 19 48-66 553-571 (717)
25 COG1579 Zn-ribbon protein, pos 82.5 48 0.001 31.9 14.1 8 212-219 202-209 (239)
26 COG1579 Zn-ribbon protein, pos 82.2 49 0.0011 31.8 17.1 38 33-70 14-51 (239)
27 PF08317 Spc7: Spc7 kinetochor 81.4 59 0.0013 32.2 16.4 6 31-36 139-144 (325)
28 PHA02562 46 endonuclease subun 81.3 74 0.0016 33.3 16.6 54 40-93 300-353 (562)
29 PRK00409 recombination and DNA 81.1 38 0.00083 37.8 14.7 34 36-69 491-525 (782)
30 PLN03094 Substrate binding sub 81.0 69 0.0015 32.7 15.6 16 28-43 226-241 (370)
31 TIGR01069 mutS2 MutS2 family p 80.5 35 0.00076 38.0 14.1 46 75-120 516-561 (771)
32 TIGR03319 YmdA_YtgF conserved 80.2 86 0.0019 33.3 18.3 7 313-319 378-384 (514)
33 KOG0971 Microtubule-associated 79.5 69 0.0015 36.4 15.4 17 340-356 711-727 (1243)
34 PRK03918 chromosome segregatio 79.4 1.1E+02 0.0024 34.0 19.6 7 270-276 815-821 (880)
35 KOG0250 DNA repair protein RAD 79.3 1.2E+02 0.0027 34.9 17.7 49 40-88 296-348 (1074)
36 PHA03246 large tegument protei 79.2 39 0.00085 41.9 14.2 138 34-173 995-1154(3095)
37 PRK00409 recombination and DNA 78.5 81 0.0017 35.3 16.1 45 75-119 521-565 (782)
38 PF13747 DUF4164: Domain of un 77.9 36 0.00077 27.6 11.9 28 43-70 5-32 (89)
39 TIGR02680 conserved hypothetic 77.0 1.7E+02 0.0036 34.9 19.3 33 31-63 853-885 (1353)
40 TIGR00606 rad50 rad50. This fa 76.9 1.3E+02 0.0027 35.7 17.9 18 48-65 845-862 (1311)
41 COG1382 GimC Prefoldin, chaper 76.6 49 0.0011 28.5 12.6 88 33-128 7-96 (119)
42 KOG3091 Nuclear pore complex, 76.1 86 0.0019 33.2 14.4 54 27-86 332-385 (508)
43 COG1196 Smc Chromosome segrega 75.7 1.7E+02 0.0036 34.2 18.6 9 268-276 1089-1097(1163)
44 KOG0994 Extracellular matrix g 75.0 1.1E+02 0.0024 35.8 15.7 18 316-333 1733-1750(1758)
45 COG0497 RecN ATPase involved i 74.8 81 0.0018 34.0 14.2 36 23-58 199-234 (557)
46 PRK09343 prefoldin subunit bet 74.6 53 0.0011 28.0 13.0 30 100-129 69-98 (121)
47 COG4942 Membrane-bound metallo 74.5 61 0.0013 33.6 12.8 28 152-179 104-131 (420)
48 COG3074 Uncharacterized protei 73.3 43 0.00093 26.3 10.7 26 44-69 9-34 (79)
49 PLN03188 kinesin-12 family pro 72.6 2.1E+02 0.0045 33.9 18.6 40 44-83 1098-1144(1320)
50 KOG0976 Rho/Rac1-interacting s 72.0 1.4E+02 0.003 33.8 15.1 45 42-86 333-377 (1265)
51 KOG0243 Kinesin-like protein [ 71.6 2E+02 0.0043 33.3 17.6 129 45-173 403-552 (1041)
52 PF07926 TPR_MLP1_2: TPR/MLP1/ 71.5 65 0.0014 27.6 12.8 68 76-143 58-125 (132)
53 KOG0996 Structural maintenance 71.1 1.6E+02 0.0034 34.6 15.8 17 311-327 782-798 (1293)
54 KOG0250 DNA repair protein RAD 71.1 2.1E+02 0.0045 33.2 18.6 50 31-80 273-322 (1074)
55 KOG0161 Myosin class II heavy 70.9 2.4E+02 0.0052 35.0 18.2 19 154-172 1119-1137(1930)
56 PRK10869 recombination and rep 70.5 1.6E+02 0.0034 31.6 17.6 42 18-59 194-235 (553)
57 PF11932 DUF3450: Protein of u 70.1 1E+02 0.0022 29.3 13.8 32 91-122 66-97 (251)
58 PRK08475 F0F1 ATP synthase sub 69.9 83 0.0018 28.2 14.4 17 155-171 132-148 (167)
59 PRK15422 septal ring assembly 69.7 56 0.0012 26.2 11.1 13 56-68 7-19 (79)
60 PF09730 BicD: Microtubule-ass 69.4 1.9E+02 0.0042 32.2 18.1 18 129-146 152-169 (717)
61 KOG0995 Centromere-associated 69.3 1.6E+02 0.0034 31.8 14.7 35 31-65 219-254 (581)
62 TIGR03752 conj_TIGR03752 integ 68.6 68 0.0015 33.8 11.7 26 47-72 60-85 (472)
63 KOG0804 Cytoplasmic Zn-finger 68.6 1.1E+02 0.0025 32.0 13.1 14 54-67 348-361 (493)
64 PRK10884 SH3 domain-containing 68.2 58 0.0013 30.5 10.2 35 31-66 79-113 (206)
65 PF11180 DUF2968: Protein of u 68.2 1E+02 0.0023 28.7 13.1 53 110-162 127-181 (192)
66 TIGR00606 rad50 rad50. This fa 68.1 2.6E+02 0.0056 33.2 20.3 29 153-181 357-385 (1311)
67 PF04156 IncA: IncA protein; 67.3 94 0.002 27.8 15.3 21 44-64 86-106 (191)
68 PHA03247 large tegument protei 67.2 1.4E+02 0.0031 37.9 15.1 141 33-173 911-1082(3151)
69 PF12128 DUF3584: Protein of u 66.8 2.6E+02 0.0057 32.8 18.8 26 39-64 607-632 (1201)
70 TIGR03495 phage_LysB phage lys 66.5 91 0.002 27.4 10.9 40 98-137 71-111 (135)
71 PRK02224 chromosome segregatio 65.5 2.3E+02 0.0049 31.6 19.2 6 271-276 815-820 (880)
72 TIGR03752 conj_TIGR03752 integ 65.5 57 0.0012 34.3 10.4 27 43-69 63-89 (472)
73 PF07888 CALCOCO1: Calcium bin 65.3 2E+02 0.0044 31.0 18.3 21 45-65 177-197 (546)
74 TIGR01005 eps_transp_fam exopo 65.3 2.2E+02 0.0047 31.3 19.0 18 317-334 561-578 (754)
75 PRK12705 hypothetical protein; 65.2 2E+02 0.0042 30.8 15.8 12 251-262 294-305 (508)
76 KOG0977 Nuclear envelope prote 64.8 2.1E+02 0.0045 30.9 16.4 33 41-73 94-126 (546)
77 PLN03086 PRLI-interacting fact 64.5 37 0.0008 36.6 9.1 43 98-140 28-71 (567)
78 PF10498 IFT57: Intra-flagella 64.4 1.1E+02 0.0024 31.0 12.1 36 34-69 222-257 (359)
79 smart00787 Spc7 Spc7 kinetocho 63.6 1.6E+02 0.0035 29.3 16.7 8 31-38 134-141 (312)
80 COG3206 GumC Uncharacterized p 63.4 1.9E+02 0.004 29.9 16.2 36 105-140 345-380 (458)
81 KOG4643 Uncharacterized coiled 63.0 2.9E+02 0.0064 32.0 18.1 22 310-331 815-836 (1195)
82 PF04111 APG6: Autophagy prote 62.4 1.7E+02 0.0037 29.0 22.7 65 236-329 241-307 (314)
83 TIGR00996 Mtu_fam_mce virulenc 62.0 1.5E+02 0.0033 28.3 14.5 62 76-137 173-234 (291)
84 TIGR03319 YmdA_YtgF conserved 61.6 2.2E+02 0.0049 30.2 17.4 14 209-222 202-215 (514)
85 PF06632 XRCC4: DNA double-str 61.4 1.2E+02 0.0027 30.6 11.8 39 34-72 132-170 (342)
86 PF10392 COG5: Golgi transport 61.4 1E+02 0.0023 26.3 13.3 74 43-116 30-104 (132)
87 KOG1962 B-cell receptor-associ 61.0 1.2E+02 0.0026 28.7 10.9 33 105-137 175-207 (216)
88 PRK12704 phosphodiesterase; Pr 61.0 2.3E+02 0.005 30.2 17.1 18 152-169 161-178 (520)
89 TIGR02449 conserved hypothetic 60.7 76 0.0016 24.5 9.4 56 56-118 3-58 (65)
90 PF04344 CheZ: Chemotaxis phos 60.6 1.5E+02 0.0032 27.8 11.8 29 213-243 186-214 (214)
91 PF15290 Syntaphilin: Golgi-lo 60.5 1.8E+02 0.0039 28.8 12.5 70 48-122 63-137 (305)
92 PF06005 DUF904: Protein of un 60.4 80 0.0017 24.7 11.3 15 55-69 6-20 (72)
93 PF13874 Nup54: Nucleoporin co 59.8 76 0.0016 27.6 8.9 53 27-85 28-80 (141)
94 COG0419 SbcC ATPase involved i 59.2 3.1E+02 0.0067 31.1 19.4 12 210-221 460-471 (908)
95 PF10234 Cluap1: Clusterin-ass 58.6 1.5E+02 0.0034 28.9 11.5 61 77-137 169-232 (267)
96 KOG0964 Structural maintenance 58.6 3.3E+02 0.0071 31.6 15.1 40 47-86 231-270 (1200)
97 PF08614 ATG16: Autophagy prot 58.1 1.1E+02 0.0024 27.9 10.0 28 41-68 76-103 (194)
98 PRK11281 hypothetical protein; 57.9 1E+02 0.0022 36.0 11.7 21 124-144 161-181 (1113)
99 PF06248 Zw10: Centromere/kine 57.9 2.7E+02 0.0058 29.9 18.1 48 126-173 122-174 (593)
100 PF10168 Nup88: Nuclear pore c 57.6 3.1E+02 0.0067 30.5 18.8 75 44-122 541-620 (717)
101 PF15456 Uds1: Up-regulated Du 57.6 1.3E+02 0.0027 26.0 10.7 45 23-68 13-57 (124)
102 PF13851 GAS: Growth-arrest sp 57.5 1.6E+02 0.0035 27.3 13.8 47 41-87 57-103 (201)
103 smart00787 Spc7 Spc7 kinetocho 57.3 2.1E+02 0.0045 28.5 15.3 22 46-67 172-193 (312)
104 KOG0976 Rho/Rac1-interacting s 57.3 3.4E+02 0.0073 30.9 16.8 21 40-60 345-365 (1265)
105 PF15066 CAGE1: Cancer-associa 57.0 2.6E+02 0.0057 29.6 14.2 114 48-161 333-475 (527)
106 PRK10884 SH3 domain-containing 57.0 1.7E+02 0.0037 27.4 12.1 24 40-63 94-117 (206)
107 TIGR02680 conserved hypothetic 57.0 4.1E+02 0.0089 31.8 19.5 12 163-174 983-994 (1353)
108 PF06103 DUF948: Bacterial pro 56.8 97 0.0021 24.5 10.4 41 39-79 19-59 (90)
109 PRK04863 mukB cell division pr 56.8 4.4E+02 0.0095 32.0 19.7 29 40-68 308-336 (1486)
110 PF12128 DUF3584: Protein of u 56.5 3.9E+02 0.0085 31.4 19.3 29 42-70 652-680 (1201)
111 KOG4673 Transcription factor T 56.4 3.3E+02 0.0071 30.4 16.5 37 31-70 404-440 (961)
112 PF14712 Snapin_Pallidin: Snap 55.5 1E+02 0.0022 24.4 9.8 28 43-70 18-45 (92)
113 PF04100 Vps53_N: Vps53-like, 54.9 2.5E+02 0.0054 28.6 15.0 31 40-70 19-49 (383)
114 PF14662 CCDC155: Coiled-coil 54.2 1.9E+02 0.0041 27.0 17.3 55 38-95 7-61 (193)
115 PF12325 TMF_TATA_bd: TATA ele 53.9 1.4E+02 0.0031 25.6 13.8 30 42-71 19-48 (120)
116 COG4985 ABC-type phosphate tra 53.0 1.7E+02 0.0037 28.3 10.4 23 46-68 164-186 (289)
117 KOG3915 Transcription regulato 52.7 1.9E+02 0.0041 30.7 11.4 20 49-68 495-514 (641)
118 TIGR00293 prefoldin, archaeal 52.3 1.2E+02 0.0026 25.3 8.7 23 101-123 85-107 (126)
119 KOG4182 Uncharacterized conser 52.1 3.2E+02 0.0069 29.4 13.0 32 147-178 216-247 (828)
120 KOG0804 Cytoplasmic Zn-finger 52.1 3.1E+02 0.0067 28.9 15.6 26 90-115 377-402 (493)
121 KOG4571 Activating transcripti 51.8 1E+02 0.0022 30.5 9.0 44 85-128 231-274 (294)
122 COG1196 Smc Chromosome segrega 51.8 4.5E+02 0.0098 30.7 19.5 16 40-55 738-753 (1163)
123 PF00038 Filament: Intermediat 51.8 2.3E+02 0.005 27.3 16.7 30 40-69 12-41 (312)
124 PF10191 COG7: Golgi complex c 51.4 3.9E+02 0.0085 29.9 15.8 16 129-144 147-162 (766)
125 PF05667 DUF812: Protein of un 51.3 3E+02 0.0064 30.0 13.3 117 54-172 315-431 (594)
126 KOG0161 Myosin class II heavy 51.1 5.9E+02 0.013 31.8 19.2 25 44-68 976-1000(1930)
127 PF07926 TPR_MLP1_2: TPR/MLP1/ 50.5 1.6E+02 0.0035 25.2 15.4 30 40-69 4-33 (132)
128 PF03962 Mnd1: Mnd1 family; I 50.3 2E+02 0.0044 26.3 11.1 28 40-67 70-97 (188)
129 KOG0612 Rho-associated, coiled 50.2 5E+02 0.011 30.8 16.2 16 128-143 586-601 (1317)
130 TIGR00634 recN DNA repair prot 50.0 3.5E+02 0.0075 28.9 17.8 39 20-58 200-238 (563)
131 TIGR02231 conserved hypothetic 50.0 2.4E+02 0.0051 29.7 12.3 20 44-63 76-95 (525)
132 COG2433 Uncharacterized conser 49.6 3.9E+02 0.0084 29.3 13.7 62 80-141 428-489 (652)
133 COG1842 PspA Phage shock prote 49.5 2.4E+02 0.0051 26.8 16.9 119 41-159 40-176 (225)
134 KOG0249 LAR-interacting protei 49.4 4.2E+02 0.0092 29.7 15.4 21 44-64 103-123 (916)
135 KOG0963 Transcription factor/C 49.3 3.9E+02 0.0085 29.2 16.2 62 5-70 255-316 (629)
136 PF03670 UPF0184: Uncharacteri 49.2 1.3E+02 0.0029 24.3 7.8 33 39-71 33-65 (83)
137 TIGR02231 conserved hypothetic 48.7 2.8E+02 0.006 29.2 12.5 19 44-62 83-101 (525)
138 PF06120 Phage_HK97_TLTM: Tail 48.5 2.9E+02 0.0063 27.5 16.1 64 46-109 41-106 (301)
139 KOG2180 Late Golgi protein sor 48.3 3.1E+02 0.0066 30.6 12.6 31 40-70 34-64 (793)
140 PRK03947 prefoldin subunit alp 47.5 1.8E+02 0.0039 24.9 13.3 27 100-126 92-118 (140)
141 PHA02562 46 endonuclease subun 47.4 3.5E+02 0.0077 28.2 15.2 11 234-244 474-484 (562)
142 PF10498 IFT57: Intra-flagella 47.2 3.2E+02 0.007 27.7 16.6 10 31-40 193-202 (359)
143 PRK10929 putative mechanosensi 47.2 3.3E+02 0.0071 32.0 13.5 130 31-168 57-187 (1109)
144 PF04048 Sec8_exocyst: Sec8 ex 47.2 1.9E+02 0.0042 25.1 10.3 69 47-115 41-110 (142)
145 PF12325 TMF_TATA_bd: TATA ele 46.8 1.9E+02 0.0041 24.8 13.4 52 18-69 5-60 (120)
146 PF00261 Tropomyosin: Tropomyo 46.7 2.5E+02 0.0055 26.4 16.2 18 105-122 165-182 (237)
147 PF04156 IncA: IncA protein; 46.5 2.2E+02 0.0047 25.5 15.1 9 52-60 87-95 (191)
148 PRK11281 hypothetical protein; 46.3 5E+02 0.011 30.5 14.8 11 31-41 62-72 (1113)
149 PF14817 HAUS5: HAUS augmin-li 46.2 4.4E+02 0.0096 29.0 17.5 23 236-259 494-516 (632)
150 PF11887 DUF3407: Protein of u 45.4 2.9E+02 0.0063 26.6 12.9 23 100-122 82-104 (267)
151 TIGR03545 conserved hypothetic 45.4 3.5E+02 0.0076 29.2 12.7 17 315-331 471-487 (555)
152 PF08287 DASH_Spc19: Spc19; I 45.3 2.2E+02 0.0048 25.3 9.5 79 40-119 5-92 (153)
153 PF07888 CALCOCO1: Calcium bin 45.2 4.3E+02 0.0093 28.5 19.1 6 242-247 445-450 (546)
154 KOG1029 Endocytic adaptor prot 44.6 5.2E+02 0.011 29.4 15.1 12 44-55 456-467 (1118)
155 PF13805 Pil1: Eisosome compon 44.3 3.2E+02 0.0069 26.8 14.0 35 31-65 123-157 (271)
156 COG4372 Uncharacterized protei 44.2 3.9E+02 0.0085 27.8 19.2 12 27-38 72-83 (499)
157 KOG0980 Actin-binding protein 44.1 5.5E+02 0.012 29.5 15.9 51 45-95 332-383 (980)
158 PF11180 DUF2968: Protein of u 43.7 2.8E+02 0.006 25.9 13.5 17 46-62 98-114 (192)
159 PF07889 DUF1664: Protein of u 43.3 2.2E+02 0.0048 24.7 12.9 15 104-118 84-98 (126)
160 COG3264 Small-conductance mech 43.2 5.5E+02 0.012 29.2 14.2 25 153-177 171-196 (835)
161 PF07889 DUF1664: Protein of u 43.1 2.2E+02 0.0048 24.7 11.6 7 48-54 41-47 (126)
162 KOG3032 Uncharacterized conser 43.0 1.4E+02 0.0031 28.7 8.2 16 105-120 214-229 (264)
163 PRK04863 mukB cell division pr 42.9 7E+02 0.015 30.4 19.4 23 236-258 701-732 (1486)
164 PRK00106 hypothetical protein; 42.3 4.7E+02 0.01 28.2 18.1 16 208-223 222-237 (535)
165 KOG2391 Vacuolar sorting prote 42.2 3.9E+02 0.0084 27.2 13.5 41 54-94 226-266 (365)
166 PF07851 TMPIT: TMPIT-like pro 41.8 3.8E+02 0.0083 27.0 11.5 27 241-267 216-242 (330)
167 PF12777 MT: Microtubule-bindi 41.6 3.7E+02 0.008 26.8 13.1 29 228-257 184-212 (344)
168 COG4942 Membrane-bound metallo 41.2 4.4E+02 0.0095 27.5 16.4 29 40-68 46-74 (420)
169 PF11559 ADIP: Afadin- and alp 40.6 2.4E+02 0.0053 24.4 14.8 20 46-65 38-57 (151)
170 KOG0996 Structural maintenance 40.5 6.9E+02 0.015 29.6 17.1 32 296-327 693-728 (1293)
171 COG0497 RecN ATPase involved i 40.4 5.1E+02 0.011 28.1 16.5 82 37-122 253-338 (557)
172 PRK07352 F0F1 ATP synthase sub 40.2 2.7E+02 0.0058 24.8 14.7 8 28-35 16-23 (174)
173 PF03962 Mnd1: Mnd1 family; I 40.2 3E+02 0.0064 25.3 12.0 15 105-119 113-127 (188)
174 PF04880 NUDE_C: NUDE protein, 40.2 52 0.0011 29.9 4.7 15 55-69 2-16 (166)
175 PF10475 DUF2450: Protein of u 39.9 3.6E+02 0.0077 26.1 17.4 61 46-106 35-96 (291)
176 PF10475 DUF2450: Protein of u 39.9 3.6E+02 0.0078 26.1 14.2 13 337-349 271-283 (291)
177 PRK09343 prefoldin subunit bet 39.8 2.4E+02 0.0051 24.0 13.2 35 33-67 8-42 (121)
178 PF07544 Med9: RNA polymerase 39.6 80 0.0017 25.1 5.3 24 75-98 57-80 (83)
179 PRK09174 F0F1 ATP synthase sub 39.6 3.2E+02 0.0068 25.4 13.7 12 60-71 76-87 (204)
180 TIGR03545 conserved hypothetic 39.5 2.6E+02 0.0057 30.1 10.7 38 84-121 219-256 (555)
181 KOG0249 LAR-interacting protei 38.9 6.1E+02 0.013 28.5 14.1 75 34-109 107-181 (916)
182 KOG4460 Nuclear pore complex, 38.2 5.6E+02 0.012 27.9 13.5 115 34-148 597-727 (741)
183 PRK11546 zraP zinc resistance 37.8 2.5E+02 0.0053 25.0 8.5 29 90-118 53-81 (143)
184 KOG1853 LIS1-interacting prote 37.3 4.1E+02 0.0089 26.1 16.4 13 239-251 248-260 (333)
185 TIGR02338 gimC_beta prefoldin, 37.3 2.4E+02 0.0051 23.3 12.6 28 101-128 66-93 (110)
186 PF12072 DUF3552: Domain of un 37.2 3.3E+02 0.0072 25.0 18.3 40 78-117 79-118 (201)
187 PF10191 COG7: Golgi complex c 37.2 6.4E+02 0.014 28.2 15.5 22 47-68 35-56 (766)
188 PRK13460 F0F1 ATP synthase sub 36.6 3.1E+02 0.0067 24.4 14.7 13 56-68 50-62 (173)
189 PF14257 DUF4349: Domain of un 36.5 2.3E+02 0.0049 26.9 8.9 12 31-42 104-115 (262)
190 KOG0980 Actin-binding protein 35.6 7.3E+02 0.016 28.5 19.2 10 109-118 466-475 (980)
191 cd00632 Prefoldin_beta Prefold 35.5 2.4E+02 0.0053 22.9 12.4 23 101-123 62-84 (105)
192 PF05600 DUF773: Protein of un 35.4 4.4E+02 0.0096 28.0 11.5 122 1-137 367-488 (507)
193 PF09304 Cortex-I_coil: Cortex 35.3 2.8E+02 0.006 23.5 14.3 23 39-61 16-38 (107)
194 KOG4466 Component of histone d 35.2 4.5E+02 0.0098 26.0 11.8 88 50-143 39-136 (291)
195 PF07795 DUF1635: Protein of u 35.0 2.4E+02 0.0051 26.8 8.4 36 102-137 23-58 (214)
196 PHA03332 membrane glycoprotein 35.0 8.1E+02 0.018 28.8 14.9 22 148-169 985-1006(1328)
197 KOG0933 Structural maintenance 34.8 8E+02 0.017 28.7 17.8 49 40-88 756-805 (1174)
198 KOG0163 Myosin class VI heavy 34.7 7.4E+02 0.016 28.3 14.6 22 47-68 883-904 (1259)
199 PF11902 DUF3422: Protein of u 34.5 3.9E+02 0.0085 27.8 10.7 37 102-138 269-317 (420)
200 PF06160 EzrA: Septation ring 34.1 6.1E+02 0.013 27.1 18.0 44 75-118 134-177 (560)
201 TIGR03017 EpsF chain length de 33.8 5.2E+02 0.011 26.2 19.4 23 39-61 215-237 (444)
202 PRK06231 F0F1 ATP synthase sub 33.7 3.9E+02 0.0085 24.7 14.7 13 56-68 82-94 (205)
203 PRK00286 xseA exodeoxyribonucl 33.3 5.4E+02 0.012 26.3 16.5 13 165-177 384-396 (438)
204 KOG4673 Transcription factor T 33.2 7.4E+02 0.016 27.8 15.2 18 44-61 451-468 (961)
205 KOG3850 Predicted membrane pro 32.8 5.8E+02 0.013 26.5 13.0 89 44-142 297-389 (455)
206 PF08181 DegQ: DegQ (SacQ) fam 32.6 99 0.0022 21.7 4.1 31 31-64 6-36 (46)
207 KOG0972 Huntingtin interacting 32.6 5.2E+02 0.011 25.9 13.7 29 132-160 344-372 (384)
208 COG1256 FlgK Flagellar hook-as 32.2 6.7E+02 0.015 27.0 12.7 25 156-180 197-221 (552)
209 TIGR00237 xseA exodeoxyribonuc 32.1 5.9E+02 0.013 26.3 16.9 10 11-20 241-250 (432)
210 PF04012 PspA_IM30: PspA/IM30 32.1 4E+02 0.0087 24.4 18.1 27 42-68 40-66 (221)
211 PF10828 DUF2570: Protein of u 31.8 3E+02 0.0065 22.8 10.7 24 41-64 20-43 (110)
212 PRK06665 flgK flagellar hook-a 31.6 7.1E+02 0.015 27.1 13.5 84 91-180 146-229 (627)
213 PF09738 DUF2051: Double stran 31.5 5.3E+02 0.012 25.6 13.3 43 47-92 78-120 (302)
214 PF04849 HAP1_N: HAP1 N-termin 31.1 5.5E+02 0.012 25.7 13.1 30 27-66 158-187 (306)
215 KOG1899 LAR transmembrane tyro 31.0 7.7E+02 0.017 27.4 13.5 19 30-48 105-123 (861)
216 PF00038 Filament: Intermediat 31.0 4.9E+02 0.011 25.0 18.4 16 44-59 167-182 (312)
217 COG4372 Uncharacterized protei 30.9 6.3E+02 0.014 26.3 18.3 11 296-306 380-390 (499)
218 PF13747 DUF4164: Domain of un 30.9 2.9E+02 0.0062 22.3 11.7 19 101-119 66-84 (89)
219 KOG0972 Huntingtin interacting 30.7 5.7E+02 0.012 25.7 13.2 70 75-144 228-301 (384)
220 PF05911 DUF869: Plant protein 30.6 8.3E+02 0.018 27.6 16.0 30 31-60 83-113 (769)
221 PF06156 DUF972: Protein of un 30.1 2.9E+02 0.0062 23.2 7.4 31 40-70 9-39 (107)
222 COG4477 EzrA Negative regulato 30.0 7.4E+02 0.016 26.8 13.3 23 48-70 283-305 (570)
223 PF15254 CCDC14: Coiled-coil d 29.9 8.6E+02 0.019 27.6 15.7 36 294-330 819-854 (861)
224 PRK07191 flgK flagellar hook-a 29.6 6.6E+02 0.014 26.1 15.7 26 155-180 192-217 (456)
225 KOG2077 JNK/SAPK-associated pr 29.5 7.6E+02 0.017 27.1 11.8 23 59-81 300-322 (832)
226 TIGR01554 major_cap_HK97 phage 29.4 2.9E+02 0.0064 27.6 8.7 19 49-67 2-20 (378)
227 PRK06799 flgK flagellar hook-a 28.8 6.7E+02 0.014 25.9 13.0 24 155-178 195-218 (431)
228 KOG4367 Predicted Zn-finger pr 28.7 4.5E+02 0.0098 27.8 9.8 10 209-218 494-503 (699)
229 PLN03223 Polycystin cation cha 28.7 3.2E+02 0.007 32.9 9.5 63 52-117 836-898 (1634)
230 COG1340 Uncharacterized archae 28.5 6E+02 0.013 25.3 15.9 31 40-70 14-44 (294)
231 PRK10476 multidrug resistance 28.4 5.7E+02 0.012 25.0 14.9 10 265-274 277-286 (346)
232 KOG0241 Kinesin-like protein [ 28.4 5.1E+02 0.011 30.3 10.7 49 48-105 366-414 (1714)
233 PF07139 DUF1387: Protein of u 28.4 6E+02 0.013 25.3 10.3 12 43-54 154-165 (302)
234 PF09731 Mitofilin: Mitochondr 28.1 7.5E+02 0.016 26.3 18.2 17 242-258 494-510 (582)
235 KOG0860 Synaptobrevin/VAMP-lik 28.1 3.9E+02 0.0084 23.0 8.6 18 52-69 28-45 (116)
236 PLN03223 Polycystin cation cha 28.0 1E+03 0.023 28.9 13.3 43 38-84 777-819 (1634)
237 KOG0163 Myosin class VI heavy 27.9 8.2E+02 0.018 27.9 11.9 8 209-216 1064-1071(1259)
238 PRK09841 cryptic autophosphory 27.9 8.5E+02 0.018 26.9 19.2 18 317-334 546-563 (726)
239 PF14662 CCDC155: Coiled-coil 27.7 5.1E+02 0.011 24.2 13.5 24 42-65 4-27 (193)
240 PRK13729 conjugal transfer pil 27.5 2.7E+02 0.0059 29.5 8.1 20 46-65 69-88 (475)
241 PF05276 SH3BP5: SH3 domain-bi 27.3 5.6E+02 0.012 24.6 12.0 17 126-142 91-107 (239)
242 PF12795 MscS_porin: Mechanose 27.1 5.2E+02 0.011 24.2 11.4 126 48-174 3-141 (240)
243 PRK13428 F0F1 ATP synthase sub 27.1 7.3E+02 0.016 25.8 14.6 7 322-328 308-314 (445)
244 PF06476 DUF1090: Protein of u 26.8 4E+02 0.0086 22.6 10.1 87 52-142 23-112 (115)
245 PHA03247 large tegument protei 26.3 1.2E+03 0.027 30.3 14.0 139 31-178 1731-1878(3151)
246 PTZ00491 major vault protein; 26.3 1E+03 0.022 27.2 13.9 15 231-245 831-845 (850)
247 TIGR01843 type_I_hlyD type I s 26.0 6.5E+02 0.014 24.8 16.4 20 44-63 142-161 (423)
248 PRK10361 DNA recombination pro 25.6 8.3E+02 0.018 25.9 17.4 10 268-277 307-316 (475)
249 PF09304 Cortex-I_coil: Cortex 25.5 4.2E+02 0.0091 22.5 13.1 23 100-122 49-71 (107)
250 CHL00019 atpF ATP synthase CF0 25.3 5E+02 0.011 23.3 14.7 10 57-66 59-68 (184)
251 PLN02678 seryl-tRNA synthetase 25.1 6.4E+02 0.014 26.4 10.5 13 321-333 310-322 (448)
252 PF05400 FliT: Flagellar prote 24.5 3.1E+02 0.0067 20.6 8.6 20 101-120 54-73 (84)
253 PF07851 TMPIT: TMPIT-like pro 24.5 7.4E+02 0.016 25.0 11.2 22 154-176 73-94 (330)
254 PRK06975 bifunctional uroporph 24.4 9.6E+02 0.021 26.3 12.4 92 85-178 382-482 (656)
255 PF10376 Mei5: Double-strand r 24.2 6.2E+02 0.013 24.0 10.0 17 48-64 133-149 (221)
256 PRK06975 bifunctional uroporph 23.8 9.8E+02 0.021 26.2 14.0 15 130-144 442-456 (656)
257 PRK14472 F0F1 ATP synthase sub 23.8 5.2E+02 0.011 23.0 14.7 13 55-67 51-63 (175)
258 PF05701 WEMBL: Weak chloropla 23.7 9E+02 0.019 25.7 18.2 84 32-115 228-326 (522)
259 PF05266 DUF724: Protein of un 23.6 5.8E+02 0.013 23.5 13.3 45 43-87 73-120 (190)
260 KOG2150 CCR4-NOT transcription 23.5 4E+02 0.0086 28.9 8.5 17 55-71 3-19 (575)
261 PRK06569 F0F1 ATP synthase sub 23.5 5.4E+02 0.012 23.1 10.3 17 55-71 28-44 (155)
262 PLN02678 seryl-tRNA synthetase 23.0 5.9E+02 0.013 26.7 9.7 21 244-264 305-326 (448)
263 PF04949 Transcrip_act: Transc 23.0 5.6E+02 0.012 23.1 15.2 63 75-140 57-119 (159)
264 PF15070 GOLGA2L5: Putative go 23.0 1E+03 0.022 26.1 15.4 25 45-69 86-110 (617)
265 PRK13169 DNA replication intia 22.9 4.6E+02 0.01 22.2 7.3 31 40-70 9-39 (110)
266 PF07795 DUF1635: Protein of u 22.9 6.1E+02 0.013 24.0 8.9 22 101-122 39-60 (214)
267 KOG3433 Protein involved in me 22.9 6.3E+02 0.014 23.6 9.4 71 63-137 73-144 (203)
268 PRK11166 chemotaxis regulator 22.8 6.6E+02 0.014 23.8 16.9 15 229-243 200-214 (214)
269 PF06148 COG2: COG (conserved 22.8 76 0.0016 27.1 2.7 81 38-118 22-103 (133)
270 COG3096 MukB Uncharacterized p 22.8 1.2E+03 0.026 26.7 14.2 118 44-164 939-1074(1480)
271 PRK13729 conjugal transfer pil 22.6 3.8E+02 0.0083 28.4 8.2 10 109-118 97-106 (475)
272 PRK07521 flgK flagellar hook-a 22.6 9E+02 0.02 25.3 16.3 84 91-180 129-212 (483)
273 cd00632 Prefoldin_beta Prefold 22.5 4.3E+02 0.0093 21.5 10.7 13 49-61 16-28 (105)
274 KOG0963 Transcription factor/C 22.4 1.1E+03 0.023 26.0 15.2 38 31-68 130-167 (629)
275 PRK05431 seryl-tRNA synthetase 22.3 7.3E+02 0.016 25.6 10.2 77 38-118 27-103 (425)
276 PF14362 DUF4407: Domain of un 22.3 7.1E+02 0.015 24.0 13.7 24 44-67 140-163 (301)
277 PRK10361 DNA recombination pro 22.2 9.6E+02 0.021 25.5 19.6 9 245-253 282-290 (475)
278 KOG2891 Surface glycoprotein [ 22.2 7.9E+02 0.017 24.5 16.0 24 47-70 317-340 (445)
279 TIGR02338 gimC_beta prefoldin, 22.0 4.5E+02 0.0098 21.6 11.9 35 34-68 5-39 (110)
280 PHA01750 hypothetical protein 21.9 1.4E+02 0.003 23.3 3.5 9 55-63 44-52 (75)
281 TIGR00414 serS seryl-tRNA synt 21.6 7.6E+02 0.016 25.4 10.1 24 40-63 31-54 (418)
282 PRK03947 prefoldin subunit alp 21.5 5.1E+02 0.011 22.0 12.6 20 48-67 8-27 (140)
283 PF11945 WASH_WAHD: WAHD domai 21.3 5.4E+02 0.012 25.5 8.6 23 46-68 18-40 (297)
284 KOG0999 Microtubule-associated 21.3 1.1E+03 0.024 25.8 15.3 12 53-64 43-54 (772)
285 PRK04778 septation ring format 21.2 1E+03 0.022 25.4 16.7 133 32-172 98-235 (569)
286 CHL00118 atpG ATP synthase CF0 21.2 5.6E+02 0.012 22.4 14.9 8 62-69 47-54 (156)
287 PF06548 Kinesin-related: Kine 20.7 1E+03 0.022 25.2 17.7 12 133-144 434-445 (488)
288 COG1340 Uncharacterized archae 20.7 8.4E+02 0.018 24.2 14.3 39 48-86 8-46 (294)
289 PF12718 Tropomyosin_1: Tropom 20.5 5.8E+02 0.013 22.3 17.3 32 38-69 13-44 (143)
290 PRK12714 flgK flagellar hook-a 20.5 1.1E+03 0.024 25.6 13.5 81 91-179 134-214 (624)
291 KOG0018 Structural maintenance 20.3 1.4E+03 0.031 26.8 12.8 103 32-144 395-499 (1141)
292 PRK11519 tyrosine kinase; Prov 20.2 1.2E+03 0.026 25.7 20.1 21 315-335 539-559 (719)
293 PF04849 HAP1_N: HAP1 N-termin 20.1 8.8E+02 0.019 24.2 15.4 64 55-118 162-233 (306)
No 1
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=100.00 E-value=2.3e-41 Score=323.43 Aligned_cols=274 Identities=31% Similarity=0.467 Sum_probs=214.3
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 018202 40 RLWSLSSALSQADDKKQTLQQKLQSLIQ-----VKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERL 114 (359)
Q Consensus 40 rL~~L~~~iq~a~~~~~~L~~qI~~~le-----~~~~~~~~~~~l~~~~~rl~~~~~~~~~~~~~~r~~~~~~~~rre~L 114 (359)
+|+++..+|+++.++++.|..+|+++|+ ..........++.+++++++.++..++..+.+++..++.+.+.++.|
T Consensus 21 ~L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l 100 (302)
T PF10186_consen 21 RLLELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESL 100 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999 66666678889999999999999999998888888888888888888
Q ss_pred HHHHHHHHHhchhHHHHHHHhHHhHHHhhcccccchHHHHHHHHHHHHHHHHHHHhhhccceeeCCCCcccccccCCCCC
Q 018202 115 SMEVRSLLVAGTALSVARKRLQESNRLLAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGN 194 (359)
Q Consensus 115 ~~~ir~l~~~~~~l~~a~~~Lqe~~~~L~~e~~~~~L~~lq~~L~~rr~~lv~qL~~IyPI~~~~~~~~~~~l~~~~~~~ 194 (359)
..+...+.............+.+....+. .....+..++.++..+|..++.+|..||||+++..++.
T Consensus 101 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~l~~~l~~~r~~l~~~l~~ifpI~~~~~~~~----------- 167 (302)
T PF10186_consen 101 EQRRSRLSASQDLVESRQEQLEELQNELE--ERKQRLSQLQSQLARRRRQLIQELSEIFPIEQVSSPRR----------- 167 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCceeeccccc-----------
Confidence 88877766222233333333444333322 23455777999999999999999999999998721100
Q ss_pred CCCCCCCCCCCCCcceEEeccccCCCcccccccCCChhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCceeecCCcceeec
Q 018202 195 RSGNSAASKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYIND 274 (359)
Q Consensus 195 ~~~~~~~~~~~~~~~~tI~Gl~LP~~~~~~~~~f~~~~~~~~isaALGyvAhlv~lls~yL~vpLpYpi~~~gSrSyI~D 274 (359)
+.+..+..|+|+|++||+.. .|...+ .+.|+||||||||+|.++|+||+|||||||.+.||+|+|.|
T Consensus 168 -------~~~~~~~~~~I~~~~lp~~~-----~~~~~~-~~~isaALgyvahlv~lls~yL~v~Lpy~i~~~gs~s~i~d 234 (302)
T PF10186_consen 168 -------PSDSSSSEYTICGLPLPNSR-----DFNSLP-DEEISAALGYVAHLVSLLSRYLGVPLPYPITPSGSRSTIID 234 (302)
T ss_pred -------CCCCCCCCeeecCcccCCCc-----ccccCC-HHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccCccccchhh
Confidence 00011468999999999964 232333 35799999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcccccccccCCCCCcccCcccCCCchhhHHHHHHHHHHHHHHHHHhcCCCCC--CccchHHHHHHHHHHcc
Q 018202 275 YAPSIEPTSDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLNKDIEQLLNYIGVKSL--GPRHVLANLKELLRTIQ 352 (359)
Q Consensus 275 ~i~~~~~ss~~~~~~~~~~~~~~r~fPLy~~~~d~~~F~yaV~LLNknI~qL~~~~Gl~~~--d~r~tL~NLk~Ll~~i~ 352 (359)
.+. ....+..++.+.++.++++|+|||||||+||+|||+++|+++. |+.++|+||..++..+.
T Consensus 235 -~~~--------------~~~~~~~~~~~~~~~~~~~f~~~v~lLn~nI~~L~~~q~~~~~~l~~~~~l~nl~~~l~~l~ 299 (302)
T PF10186_consen 235 -FSP--------------SIDRPLPSLSYESGVDRQRFEYAVFLLNKNIAQLCFSQGIDVPLLDPRDTLGNLLNLLWSLL 299 (302)
T ss_pred -ccc--------------ccCCcchhhhccccccHHHHHHHHHHHHHHHHHHHHHcCCCCCcCCchhhHHHHHHHHhhhc
Confidence 321 1123334445555678999999999999999999999998887 88899999999998776
Q ss_pred CC
Q 018202 353 SP 354 (359)
Q Consensus 353 s~ 354 (359)
..
T Consensus 300 ~~ 301 (302)
T PF10186_consen 300 QA 301 (302)
T ss_pred cC
Confidence 44
No 2
>KOG2896 consensus UV radiation resistance associated protein [General function prediction only]
Probab=100.00 E-value=2.1e-34 Score=279.93 Aligned_cols=167 Identities=34% Similarity=0.556 Sum_probs=137.7
Q ss_pred HHHHHHHHHHHHHHHHhhhccceeeCCCCcccccccCCCCCCCCCCCCCCCCCCcceEEeccccCCCcccccccCCChhH
Q 018202 154 LQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAASKPVNPGSLTILGLHLTILPFTKMSLFTDKKE 233 (359)
Q Consensus 154 lq~~L~~rr~~lv~qL~~IyPI~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~tI~Gl~LP~~~~~~~~~f~~~~~ 233 (359)
..+..+.|..++...+...|+|++..++.+ .+-+ ...+.|...|||||++||+.+. +..+++
T Consensus 168 ~~~l~a~re~fL~~~~~~~~~irq~~~~~s------~i~~-------l~~~~~~~v~tIrGl~lp~~~d-----~~~~s~ 229 (377)
T KOG2896|consen 168 RNELVAKRELFLEQRIQDTFKIRQDGSPLS------KILP-------LQFSYCHLVFTIRGLKLPFIED-----KQNKSE 229 (377)
T ss_pred HHHHHHHHHhhHhHHHhhhhhhhccCcchh------eeec-------CCcccchhhhhhhcccCCchhh-----hhccch
Confidence 355667777888888999999998765421 0000 0111256789999999999652 223443
Q ss_pred HHHHHhHHHHHHHHHHHHHHhcCCCCCCceeecCCcceeecCCCCCCCCCcccccccccCCCCCcccCcccCCCchhhHH
Q 018202 234 VQRSATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKPAEFPLFLEGQDATRAA 313 (359)
Q Consensus 234 ~~~isaALGyvAhlv~lls~yL~vpLpYpi~~~gSrSyI~D~i~~~~~ss~~~~~~~~~~~~~~r~fPLy~~~~d~~~F~ 313 (359)
..++|||||+||||++||.||.+||+|||.+.||+|+|.|+++...| ..|+||||.+++++.+|+
T Consensus 230 -~~~aaALGylaHLv~~Is~~L~~pLRYPIl~~~Sks~I~D~i~~~~~--------------ttr~fply~k~~~~e~f~ 294 (377)
T KOG2896|consen 230 -QETAAALGYLAHLVSMISKYLEVPLRYPILLAGSKSYIRDYIPDIET--------------TTREFPLYTKSQEIEQFE 294 (377)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhccccccccccccccceecccCCcccc--------------ccccccCccccchHHHHH
Confidence 56999999999999999999999999999999999999999987543 268999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHccC
Q 018202 314 YAVFLLNKDIEQLLNYIGVKSLGPRHVLANLKELLRTIQS 353 (359)
Q Consensus 314 yaV~LLNknI~qL~~~~Gl~~~d~r~tL~NLk~Ll~~i~s 353 (359)
||+|||||||+|||++||+++.++++||+||.+|+..+.-
T Consensus 295 ~glylL~qNiaqlr~~~gl~t~~ld~tl~~L~d~~~~~~~ 334 (377)
T KOG2896|consen 295 YGLYLLNQNIAQLRYDCGLPTPDLDQTLDNLDDFIELLDD 334 (377)
T ss_pred HHHHHHhccHHHHHHHcCCCCccHHHhhhhHHHHHHHhhh
Confidence 9999999999999999999999999999999999987653
No 3
>KOG4398 consensus Predicted coiled-coil protein [General function prediction only]
Probab=99.62 E-value=9.1e-15 Score=138.33 Aligned_cols=160 Identities=21% Similarity=0.185 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHH-hhhccceeeCCCCcc--------------------cccccCCCCCCCCCCCCCCCCCCcceEEecc-
Q 018202 158 LRMRQQFMISQV-SFLYPVKILVGPKQE--------------------QELESFPSGNRSGNSAASKPVNPGSLTILGL- 215 (359)
Q Consensus 158 L~~rr~~lv~qL-~~IyPI~~~~~~~~~--------------------~~l~~~~~~~~~~~~~~~~~~~~~~~tI~Gl- 215 (359)
|+.-|+..+.|| ..||||..+.-+-.+ ..-++|..|+|++..-++. ...|.|-|.
T Consensus 77 l~~lr~shi~el~s~ifpi~ev~~~~~~~~~~s~e~a~~s~tvs~laear~ttyl~grwv~~~~~~~---~i~~~i~gp~ 153 (359)
T KOG4398|consen 77 LANLRRSHILELTSVIFPIEEVKTGVRDPADVSSESAMTSSTVSKLAEARRTTYLSGRWVCDDHMSD---KINFIIPGPT 153 (359)
T ss_pred HHHHHHHHHHHHHheeeeHHHHhhcccCcccchhhhhhhHHHHHHHHHhhccceecceEEEcCCCCc---ceeEEecCCc
Confidence 333444456665 899999977422111 1334788999965442221 247999997
Q ss_pred -ccCCCccc-------------ccccCCChhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCceeecCCcceeecCCCCCCC
Q 018202 216 -HLTILPFT-------------KMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEP 281 (359)
Q Consensus 216 -~LP~~~~~-------------~~~~f~~~~~~~~isaALGyvAhlv~lls~yL~vpLpYpi~~~gSrSyI~D~i~~~~~ 281 (359)
.||+..-- .++.-....++..|.+||.|++|||++||+||+|+||..+.+ .|++-.
T Consensus 154 ~slp~ngdY~ay~~w~~~~k~tsn~~~~~~~~ay~i~aAltyt~QLv~lLS~ilnvrlP~kl~~-------~dfC~e--- 223 (359)
T KOG4398|consen 154 QSLPINGDYIAYKLWAKLAKQTSNGTISLPLDAYPIFAALTYTLQLVHLLSVILNVRLPEKLSH-------HDFCIE--- 223 (359)
T ss_pred ccccCCCchHHHHHHHhhhhhccCCCcCCCccccchHHHHHHHHHHHHHHHHHhccCCchhhcc-------hhHHHH---
Confidence 78875311 000000112445799999999999999999999999999975 444421
Q ss_pred CCcccccccccCCCCCcccCcccCCCchhhHHHHHHHHHHHHHHHHHhcCCCC--CCccchHHHHHHHHHHccCC
Q 018202 282 TSDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLNKDIEQLLNYIGVKS--LGPRHVLANLKELLRTIQSP 354 (359)
Q Consensus 282 ss~~~~~~~~~~~~~~r~fPLy~~~~d~~~F~yaV~LLNknI~qL~~~~Gl~~--~d~r~tL~NLk~Ll~~i~s~ 354 (359)
.=.+..|..+|.-||-||.+||.+||+.- +-..|||.||-+|..+..++
T Consensus 224 ------------------------~ltke~f~R~~s~Ln~nIiYLc~~q~v~l~~L~~~htl~NLial~s~~~~d 274 (359)
T KOG4398|consen 224 ------------------------RLTKESFNRDWSTLNDNIIYLCIFQGVSLTKLKYTHTLHNLIALASFVVND 274 (359)
T ss_pred ------------------------HhhHHHHHHHHHHHhhhHHHHHHHhccchhhccccchHHHHHHHhhhhHhh
Confidence 11568999999999999999999999765 45679999999999877653
No 4
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=99.06 E-value=3e-08 Score=97.62 Aligned_cols=99 Identities=25% Similarity=0.333 Sum_probs=65.7
Q ss_pred ceEEeccccCCCcccccccCCChhHHHHHHhHHHHHHHHHHHHHHhcCCCC-CCceeecCCcceeecCCCCCCCCCcccc
Q 018202 209 SLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPL-RYPLRLGGSHTYINDYAPSIEPTSDLSS 287 (359)
Q Consensus 209 ~~tI~Gl~LP~~~~~~~~~f~~~~~~~~isaALGyvAhlv~lls~yL~vpL-pYpi~~~gSrSyI~D~i~~~~~ss~~~~ 287 (359)
-=||+|+.|.-.+.. .-+-..|+||+|++|.|+..||..+++.+ .|.+.|+||.|+|.+....
T Consensus 150 fGTINGlRLGrl~~~-------~V~W~EINAA~Gq~~LLL~~la~~l~~~f~~y~l~P~Gs~S~I~~~~~~--------- 213 (314)
T PF04111_consen 150 FGTINGLRLGRLPNV-------PVEWNEINAAWGQTALLLQTLAKKLNFKFQRYRLVPMGSFSKIEKLEGD--------- 213 (314)
T ss_dssp EEEETTEEE--BTTB----------HHHHHHHHHHHHHHHHHHHHHCT---SSEEEE--GGG-EEEECS-----------
T ss_pred eeeECCeeeccCCCC-------CCChHHHHHHHHHHHHHHHHHHHHhCCCcccceeEecCCCCEEEEeccC---------
Confidence 347888888754311 12334699999999999999999999986 5999999999999988631
Q ss_pred cccccCCCCCcccCcccCCC-------chhhHHHHHHHHHHHHHHHHHhc
Q 018202 288 NIALSTNTKPAEFPLFLEGQ-------DATRAAYAVFLLNKDIEQLLNYI 330 (359)
Q Consensus 288 ~~~~~~~~~~r~fPLy~~~~-------d~~~F~yaV~LLNknI~qL~~~~ 330 (359)
.....||||..+. ...+|+-|+.-+=.-+.|++...
T Consensus 214 -------~~~~~~~ly~~~~~~~~~~f~~~~Fd~am~~~L~~~~q~~~~~ 256 (314)
T PF04111_consen 214 -------KDKTTYPLYSSGSFSLGRLFSSRKFDKAMVAFLDCLQQLAEFV 256 (314)
T ss_dssp --------TCEEEESS--SS----GGG--SHHHHHHHHHHHHHHHHHHHH
T ss_pred -------CCCeEEecccCCCchhhhhhhhcchHHHHHHHHHHHHHHHHHH
Confidence 0346899998864 23589999888888888777544
No 5
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=98.33 E-value=9.6e-05 Score=74.73 Aligned_cols=95 Identities=26% Similarity=0.323 Sum_probs=69.6
Q ss_pred EEeccccCCCcccccccCCChhHHHHHHhHHHHHHHHHHHHHHhcCCCCC-CceeecCCcceeecCCCCCCCCCcccccc
Q 018202 211 TILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLR-YPLRLGGSHTYINDYAPSIEPTSDLSSNI 289 (359)
Q Consensus 211 tI~Gl~LP~~~~~~~~~f~~~~~~~~isaALGyvAhlv~lls~yL~vpLp-Ypi~~~gSrSyI~D~i~~~~~ss~~~~~~ 289 (359)
||.|++|.-.+... -+-+.|+||+|=++.++..++.=+|+.+- |.+.|+||+|||.-.-.
T Consensus 285 tIN~FRLG~lp~~p-------Vew~EINAA~GQ~vLLL~~l~~kig~~~~~y~lvp~GshSyI~~~~~------------ 345 (447)
T KOG2751|consen 285 TINNFRLGRLPSVP-------VEWDEINAAWGQTVLLLHTLANKIGLNFVRYRLVPMGSHSYIKKRMV------------ 345 (447)
T ss_pred ccccceeccccCCC-------cCHHHHHHHhhhHHHHHHHHHHhcCcccceeeeecccchhHHHHhcc------------
Confidence 57777775544211 12246999999999999999999999764 99999999999986642
Q ss_pred cccCCCCCcccCcccCCCc----hhhHHHHHHHHHHHHHHHHHh
Q 018202 290 ALSTNTKPAEFPLFLEGQD----ATRAAYAVFLLNKDIEQLLNY 329 (359)
Q Consensus 290 ~~~~~~~~r~fPLy~~~~d----~~~F~yaV~LLNknI~qL~~~ 329 (359)
..++++|||+.|+- .++|+-|+-.-=-=+.|+...
T Consensus 346 -----~~~~el~l~~sgg~~~f~~tkfD~amvafLd~L~qf~~e 384 (447)
T KOG2751|consen 346 -----NLPYELPLFQSGGLKFFWSTKFDKAMVAFLDCLKQFADE 384 (447)
T ss_pred -----CCCccchhhcCCCceeeeccccCHHHHHHHHHHHHHHHH
Confidence 24789999998863 358888876655555555433
No 6
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.91 E-value=9.8 Score=37.04 Aligned_cols=82 Identities=20% Similarity=0.332 Sum_probs=66.6
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 018202 41 LWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRS 120 (359)
Q Consensus 41 L~~L~~~iq~a~~~~~~L~~qI~~~le~~~~~~~~~~~l~~~~~rl~~~~~~~~~~~~~~r~~~~~~~~rre~L~~~ir~ 120 (359)
+.+=++.|.++...+..++.+|+++...-. +..+.+.+.+.+.+....-++++...+..+.+.+..|.+-|..+.|.
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~---~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRA 109 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIE---EIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARA 109 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677788888888888888888877543 34556666777888888889999999999999999999999999998
Q ss_pred HHHhc
Q 018202 121 LLVAG 125 (359)
Q Consensus 121 l~~~~ 125 (359)
+-..|
T Consensus 110 mq~nG 114 (265)
T COG3883 110 MQVNG 114 (265)
T ss_pred HHHcC
Confidence 77666
No 7
>PRK11637 AmiB activator; Provisional
Probab=92.88 E-value=13 Score=38.21 Aligned_cols=41 Identities=15% Similarity=0.215 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 018202 79 LEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVR 119 (359)
Q Consensus 79 l~~~~~rl~~~~~~~~~~~~~~r~~~~~~~~rre~L~~~ir 119 (359)
+.+.+..++.....++.+..++..+.+++..+++.|...++
T Consensus 91 i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlr 131 (428)
T PRK11637 91 LRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLD 131 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555566666666666666666666664
No 8
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=91.61 E-value=18 Score=39.80 Aligned_cols=31 Identities=39% Similarity=0.544 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018202 44 LSSALSQADDKKQTLQQKLQSLIQVKAESLK 74 (359)
Q Consensus 44 L~~~iq~a~~~~~~L~~qI~~~le~~~~~~~ 74 (359)
+..+|+++..+.+.|+.++..+...++...+
T Consensus 458 lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq 488 (697)
T PF09726_consen 458 LKSELSQLRQENEQLQNKLQNLVQARQQDKQ 488 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445888888888888888888887764443
No 9
>PRK10869 recombination and repair protein; Provisional
Probab=91.28 E-value=4.9 Score=42.83 Aligned_cols=19 Identities=21% Similarity=0.191 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 018202 105 EDAKNQEERLSMEVRSLLV 123 (359)
Q Consensus 105 ~~~~~rre~L~~~ir~l~~ 123 (359)
+++-..++++..++..+..
T Consensus 320 ~~~~~~~~~l~~eL~~L~~ 338 (553)
T PRK10869 320 EELPQHHQQLLEEQQQLDD 338 (553)
T ss_pred HHHHHHHHHHHHHHHHhhC
Confidence 4444555555555544333
No 10
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=90.87 E-value=10 Score=36.11 Aligned_cols=72 Identities=21% Similarity=0.164 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 018202 44 LSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLS 115 (359)
Q Consensus 44 L~~~iq~a~~~~~~L~~qI~~~le~~~~~~~~~~~l~~~~~rl~~~~~~~~~~~~~~r~~~~~~~~rre~L~ 115 (359)
+.+..++........+.+|+..-+.+.........+..-.+.++.....+++++..++....+++.+.+++.
T Consensus 26 ~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 26 AQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666666666666655444444444443344444444444444444444444443333333
No 11
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=90.55 E-value=12 Score=40.57 Aligned_cols=37 Identities=19% Similarity=0.184 Sum_probs=19.8
Q ss_pred HHhHHhHHHhhcccccchHHHHHHHHHHHHHHHHHHH
Q 018202 133 KRLQESNRLLAGEKGYGHLQKLQKMLRMRQQFMISQV 169 (359)
Q Consensus 133 ~~Lqe~~~~L~~e~~~~~L~~lq~~L~~rr~~lv~qL 169 (359)
.-+......+..|+...+-...+..|..+.+++|+.+
T Consensus 300 ~ll~~~~~q~~~e~~~~~~~~~~~~l~~~~~~i~~~~ 336 (650)
T TIGR03185 300 NLLDSTKAQLQKEEQSQQNQLTQEELEERDKELLESL 336 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444333333345666777777888766
No 12
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=90.51 E-value=8.1 Score=41.12 Aligned_cols=24 Identities=17% Similarity=0.178 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhch
Q 018202 103 EKEDAKNQEERLSMEVRSLLVAGT 126 (359)
Q Consensus 103 ~~~~~~~rre~L~~~ir~l~~~~~ 126 (359)
..+++...+++++.++..+.....
T Consensus 323 s~e~l~~~~~~l~~eL~~l~~~~~ 346 (563)
T TIGR00634 323 SVEEVLEYAEKIKEELDQLDDSDE 346 (563)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCHH
Confidence 345555566666666654444333
No 13
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=90.03 E-value=10 Score=38.89 Aligned_cols=25 Identities=12% Similarity=0.259 Sum_probs=19.6
Q ss_pred HHhHHHHHHHHHHHHHHhcCCCCCC
Q 018202 237 SATALGYIAHVVSLIASYLEVPLRY 261 (359)
Q Consensus 237 isaALGyvAhlv~lls~yL~vpLpY 261 (359)
|+..|..++-++.++|..+++|+|+
T Consensus 344 inllL~l~~vlLv~vSt~~~~~~Pl 368 (395)
T PF10267_consen 344 INLLLTLLTVLLVFVSTVANCPLPL 368 (395)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcHH
Confidence 6777888888888888888887663
No 14
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=89.61 E-value=14 Score=42.59 Aligned_cols=39 Identities=10% Similarity=0.147 Sum_probs=24.4
Q ss_pred hhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018202 32 EDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKA 70 (359)
Q Consensus 32 ~~~~~~l~rL~~L~~~iq~a~~~~~~L~~qI~~~le~~~ 70 (359)
.+++..+++|.|.+..|+.....+++.+.-...+-..++
T Consensus 1518 ~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~ 1556 (1758)
T KOG0994|consen 1518 GEIQERVASLPNVDAILSRTKGDIARAENLQSEAERARS 1556 (1758)
T ss_pred HHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHh
Confidence 456667777788877777776666555544444444443
No 15
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=89.47 E-value=20 Score=34.11 Aligned_cols=42 Identities=31% Similarity=0.395 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 018202 75 RSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSM 116 (359)
Q Consensus 75 ~~~~l~~~~~rl~~~~~~~~~~~~~~r~~~~~~~~rre~L~~ 116 (359)
...++...+.+++..+..++..+.++...++.++.++..|..
T Consensus 68 ~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~ 109 (302)
T PF10186_consen 68 LRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSA 109 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566667777777777777777777888888877773
No 16
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=88.44 E-value=42 Score=37.05 Aligned_cols=33 Identities=24% Similarity=0.271 Sum_probs=27.0
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018202 39 ARLWSLSSALSQADDKKQTLQQKLQSLIQVKAE 71 (359)
Q Consensus 39 ~rL~~L~~~iq~a~~~~~~L~~qI~~~le~~~~ 71 (359)
.++.+|..+.+.=+.....||+++.+....+..
T Consensus 474 ~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~ 506 (697)
T PF09726_consen 474 NKLQNLVQARQQDKQSLQQLEKRLAEERRQRAS 506 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478889999888888889999998887776654
No 17
>PRK09039 hypothetical protein; Validated
Probab=87.91 E-value=32 Score=34.56 Aligned_cols=15 Identities=7% Similarity=0.082 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHhhh
Q 018202 158 LRMRQQFMISQVSFL 172 (359)
Q Consensus 158 L~~rr~~lv~qL~~I 172 (359)
|..-|....+.|..+
T Consensus 192 l~~~~~~~~~~l~~~ 206 (343)
T PRK09039 192 LNRYRSEFFGRLREI 206 (343)
T ss_pred HHHhHHHHHHHHHHH
Confidence 344444444444433
No 18
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=87.55 E-value=31 Score=34.14 Aligned_cols=14 Identities=21% Similarity=0.192 Sum_probs=8.7
Q ss_pred HHHHhhhccceeeC
Q 018202 166 ISQVSFLYPVKILV 179 (359)
Q Consensus 166 v~qL~~IyPI~~~~ 179 (359)
+..|..+.+++...
T Consensus 285 ~~~Le~~~gw~~~~ 298 (325)
T PF08317_consen 285 VDALEKLTGWKIVS 298 (325)
T ss_pred HHHHHHHHCcEEEE
Confidence 55566677777653
No 19
>KOG2896 consensus UV radiation resistance associated protein [General function prediction only]
Probab=86.28 E-value=41 Score=34.21 Aligned_cols=100 Identities=23% Similarity=0.262 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHH-HHhcCCCCCCceeecCCcceeecCCCC--CCCCCcccccccccCCCCCcccCcccCCCchhhHHHHH
Q 018202 240 ALGYIAHVVSLI-ASYLEVPLRYPLRLGGSHTYINDYAPS--IEPTSDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAV 316 (359)
Q Consensus 240 ALGyvAhlv~ll-s~yL~vpLpYpi~~~gSrSyI~D~i~~--~~~ss~~~~~~~~~~~~~~r~fPLy~~~~d~~~F~yaV 316 (359)
=|.|..|++..+ -.=|-.|+-|.-...--.-+|.|-.+. ..|-- +-+......+|++|..+++-.+|-|.+
T Consensus 238 ylaHLv~~Is~~L~~pLRYPIl~~~Sks~I~D~i~~~~~ttr~fply------~k~~~~e~f~~glylL~qNiaqlr~~~ 311 (377)
T KOG2896|consen 238 YLAHLVSMISKYLEVPLRYPILLAGSKSYIRDYIPDIETTTREFPLY------TKSQEIEQFEYGLYLLNQNIAQLRYDC 311 (377)
T ss_pred HHHHHHHHHHHHhccccccccccccccceecccCCccccccccccCc------cccchHHHHHHHHHHHhccHHHHHHHc
Confidence 344555555433 333566666544333333344444431 00000 011223567899999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHccCCCC
Q 018202 317 FLLNKDIEQLLNYIGVKSLGPRHVLANLKELLRTIQSPEY 356 (359)
Q Consensus 317 ~LLNknI~qL~~~~Gl~~~d~r~tL~NLk~Ll~~i~s~~~ 356 (359)
+|.+.|+.+.+. +|.|...++..+....+
T Consensus 312 gl~t~~ld~tl~-----------~L~d~~~~~~~~e~~~~ 340 (377)
T KOG2896|consen 312 GLPTPDLDQTLD-----------NLDDFIELLDDIEDINH 340 (377)
T ss_pred CCCCccHHHhhh-----------hHHHHHHHhhhhhhccc
Confidence 999999988653 56677766666655443
No 20
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=86.18 E-value=31 Score=38.49 Aligned_cols=78 Identities=23% Similarity=0.265 Sum_probs=43.6
Q ss_pred HHHHHHHhcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 018202 35 DQELARLWSLSSA-LSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEER 113 (359)
Q Consensus 35 ~~~l~rL~~L~~~-iq~a~~~~~~L~~qI~~~le~~~~~~~~~~~l~~~~~rl~~~~~~~~~~~~~~r~~~~~~~~rre~ 113 (359)
=-.+++...|... |+.|..-......+++.+|+.-.+ ...++++..+.++..+..+++...+.+...+++++++++
T Consensus 485 a~~iA~~~Glp~~ii~~A~~~~~~~~~~~~~li~~L~~---~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~ 561 (771)
T TIGR01069 485 AFEIAQRYGIPHFIIEQAKTFYGEFKEEINVLIEKLSA---LEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERN 561 (771)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346777777655 777888778888888888886532 223333333444444444444444444444444444444
Q ss_pred HH
Q 018202 114 LS 115 (359)
Q Consensus 114 L~ 115 (359)
+.
T Consensus 562 ~~ 563 (771)
T TIGR01069 562 KK 563 (771)
T ss_pred HH
Confidence 33
No 21
>PRK12704 phosphodiesterase; Provisional
Probab=84.47 E-value=60 Score=34.53 Aligned_cols=11 Identities=18% Similarity=0.108 Sum_probs=5.0
Q ss_pred hHHHHHHHHHH
Q 018202 311 RAAYAVFLLNK 321 (359)
Q Consensus 311 ~F~yaV~LLNk 321 (359)
....|..+|.+
T Consensus 382 H~~iGa~il~~ 392 (520)
T PRK12704 382 HVEIGAELAKK 392 (520)
T ss_pred HHHHHHHHHHH
Confidence 44445554443
No 22
>PRK09039 hypothetical protein; Validated
Probab=84.19 E-value=49 Score=33.23 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 018202 44 LSSALSQADDKKQTLQQKLQS 64 (359)
Q Consensus 44 L~~~iq~a~~~~~~L~~qI~~ 64 (359)
|+..|..-..+.+.|+.+|.+
T Consensus 44 Ls~~i~~~~~eL~~L~~qIa~ 64 (343)
T PRK09039 44 LSREISGKDSALDRLNSQIAE 64 (343)
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 344455555555555555554
No 23
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=83.87 E-value=69 Score=34.73 Aligned_cols=22 Identities=23% Similarity=0.208 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018202 46 SALSQADDKKQTLQQKLQSLIQ 67 (359)
Q Consensus 46 ~~iq~a~~~~~~L~~qI~~~le 67 (359)
..+.+...+...++.+|+.+=+
T Consensus 391 ~~~~~~~~~~~~~e~el~~l~~ 412 (650)
T TIGR03185 391 DAKSQLLKELRELEEELAEVDK 412 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555544443
No 24
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=83.49 E-value=20 Score=39.61 Aligned_cols=19 Identities=16% Similarity=0.382 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 018202 48 LSQADDKKQTLQQKLQSLI 66 (359)
Q Consensus 48 iq~a~~~~~~L~~qI~~~l 66 (359)
|.....-++.++.+++.+-
T Consensus 553 i~~~~~ar~ei~~rv~~Lk 571 (717)
T PF10168_consen 553 IEKQDLAREEIQRRVKLLK 571 (717)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444333
No 25
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=82.51 E-value=48 Score=31.87 Aligned_cols=8 Identities=13% Similarity=-0.068 Sum_probs=3.9
Q ss_pred EeccccCC
Q 018202 212 ILGLHLTI 219 (359)
Q Consensus 212 I~Gl~LP~ 219 (359)
=|++.||.
T Consensus 202 GC~m~l~~ 209 (239)
T COG1579 202 GCHMKLPS 209 (239)
T ss_pred CCeeeecH
Confidence 34455554
No 26
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=82.19 E-value=49 Score=31.79 Aligned_cols=38 Identities=18% Similarity=0.148 Sum_probs=20.4
Q ss_pred hhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018202 33 DYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKA 70 (359)
Q Consensus 33 ~~~~~l~rL~~L~~~iq~a~~~~~~L~~qI~~~le~~~ 70 (359)
.++..+-||.-.-..+++++.+.......+++.++...
T Consensus 14 ~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~ 51 (239)
T COG1579 14 KLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALE 51 (239)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555433
No 27
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=81.39 E-value=59 Score=32.20 Aligned_cols=6 Identities=17% Similarity=0.944 Sum_probs=3.9
Q ss_pred hhhhHH
Q 018202 31 WEDYDQ 36 (359)
Q Consensus 31 ~~~~~~ 36 (359)
|++.+.
T Consensus 139 WYeWR~ 144 (325)
T PF08317_consen 139 WYEWRM 144 (325)
T ss_pred HHHHHH
Confidence 777664
No 28
>PHA02562 46 endonuclease subunit; Provisional
Probab=81.28 E-value=74 Score=33.27 Aligned_cols=54 Identities=15% Similarity=0.310 Sum_probs=29.6
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 018202 40 RLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLM 93 (359)
Q Consensus 40 rL~~L~~~iq~a~~~~~~L~~qI~~~le~~~~~~~~~~~l~~~~~rl~~~~~~~ 93 (359)
++..|.+-+++...+.+.++..|..+-+......+....+.+.+..+...+..+
T Consensus 300 ~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i 353 (562)
T PHA02562 300 RITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSL 353 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777777777777777555544433334444444444444333333
No 29
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=81.11 E-value=38 Score=37.80 Aligned_cols=34 Identities=24% Similarity=0.252 Sum_probs=20.5
Q ss_pred HHHHHHhcHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 018202 36 QELARLWSLSSA-LSQADDKKQTLQQKLQSLIQVK 69 (359)
Q Consensus 36 ~~l~rL~~L~~~-iq~a~~~~~~L~~qI~~~le~~ 69 (359)
..+++...+... |..|..-...=..+++.+|+..
T Consensus 491 ~~iA~~~Glp~~ii~~A~~~~~~~~~~~~~li~~l 525 (782)
T PRK00409 491 FEIAKRLGLPENIIEEAKKLIGEDKEKLNELIASL 525 (782)
T ss_pred HHHHHHhCcCHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 346677777655 5666655555555666666653
No 30
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=80.97 E-value=69 Score=32.71 Aligned_cols=16 Identities=13% Similarity=0.046 Sum_probs=13.2
Q ss_pred ccchhhhHHHHHHHhc
Q 018202 28 VIEWEDYDQELARLWS 43 (359)
Q Consensus 28 ~~~~~~~~~~l~rL~~ 43 (359)
-++|+++-..+.||.+
T Consensus 226 ~vsld~L~~~ltrL~~ 241 (370)
T PLN03094 226 GVSLDELVGICTRLAR 241 (370)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 3779999988888776
No 31
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=80.51 E-value=35 Score=38.02 Aligned_cols=46 Identities=20% Similarity=0.268 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 018202 75 RSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRS 120 (359)
Q Consensus 75 ~~~~l~~~~~rl~~~~~~~~~~~~~~r~~~~~~~~rre~L~~~ir~ 120 (359)
.+.++.+.+..++.....+++.+.+.++..++++.+.++|..+.+.
T Consensus 516 li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~ 561 (771)
T TIGR01069 516 LIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERN 561 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555666666666666665555543
No 32
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=80.24 E-value=86 Score=33.34 Aligned_cols=7 Identities=14% Similarity=-0.055 Sum_probs=3.1
Q ss_pred HHHHHHH
Q 018202 313 AYAVFLL 319 (359)
Q Consensus 313 ~yaV~LL 319 (359)
.+|..+|
T Consensus 378 ~~Ga~ll 384 (514)
T TIGR03319 378 EIGAELA 384 (514)
T ss_pred HHHHHHH
Confidence 3444444
No 33
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=79.53 E-value=69 Score=36.44 Aligned_cols=17 Identities=41% Similarity=0.280 Sum_probs=8.6
Q ss_pred hHHHHHHHHHHccCCCC
Q 018202 340 VLANLKELLRTIQSPEY 356 (359)
Q Consensus 340 tL~NLk~Ll~~i~s~~~ 356 (359)
++.-+-+||..-|.+++
T Consensus 711 ~lD~~ieLLkk~qlDEn 727 (1243)
T KOG0971|consen 711 SLDFLIELLKKDQLDEN 727 (1243)
T ss_pred HHHHHHHHHhhcccccc
Confidence 44455555555555444
No 34
>PRK03918 chromosome segregation protein; Provisional
Probab=79.41 E-value=1.1e+02 Score=34.03 Aligned_cols=7 Identities=29% Similarity=0.097 Sum_probs=4.1
Q ss_pred ceeecCC
Q 018202 270 TYINDYA 276 (359)
Q Consensus 270 SyI~D~i 276 (359)
.+|.|.+
T Consensus 815 ~lilDEp 821 (880)
T PRK03918 815 LLILDEP 821 (880)
T ss_pred eEEEeCC
Confidence 3556764
No 35
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=79.34 E-value=1.2e+02 Score=34.93 Aligned_cols=49 Identities=16% Similarity=0.338 Sum_probs=22.3
Q ss_pred HHhcHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH-hhHHHHHHHHHHHH
Q 018202 40 RLWSLSSALSQADDKKQTLQ---QKLQSLIQVKAESLK-RSNELEEMRERLEA 88 (359)
Q Consensus 40 rL~~L~~~iq~a~~~~~~L~---~qI~~~le~~~~~~~-~~~~l~~~~~rl~~ 88 (359)
+...|+.-|.+...+.+.+. ..|++-++......+ +..+++.++..++.
T Consensus 296 k~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~ 348 (1074)
T KOG0250|consen 296 KVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDD 348 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 34455555555555555555 333333333322222 44555555554433
No 36
>PHA03246 large tegument protein UL36; Provisional
Probab=79.23 E-value=39 Score=41.95 Aligned_cols=138 Identities=21% Similarity=0.291 Sum_probs=84.3
Q ss_pred hHHHHHHHhcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhHHH----------HHHHHHHHHHHHHHHHHHHhhHH
Q 018202 34 YDQELARLWSLSSALSQADDKKQTLQ-QKLQSLIQVKAESLKRSNEL----------EEMRERLEARRLLMEKMSMRSKV 102 (359)
Q Consensus 34 ~~~~l~rL~~L~~~iq~a~~~~~~L~-~qI~~~le~~~~~~~~~~~l----------~~~~~rl~~~~~~~~~~~~~~r~ 102 (359)
...+|.|+.-|+.++.++...-.... ..+.+++.--.+.+++..-+ .+.+.|++.++..++.+....|.
T Consensus 995 ~~AELeRF~aLsAAv~~~~d~~~~~~~~~lde~iR~aedlvrqak~l~~~kl~~~Ls~e~R~rl~~Rr~evEtl~~~aR~ 1074 (3095)
T PHA03246 995 ALTELERLHELESRIASYTDLETTVDLQKLDEALKLANSIVKLTKGLDGAKLASSLSSDIREKIRQKRSETETLIARLSA 1074 (3095)
T ss_pred hhhHHHHHHHHHHHHHHhhhhhcccCccccHHHHHHHHHHHHHHHHhhhhhhhcccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457788888888887765444322 22222332222222222222 25677888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhch---hHHHHHHHhHHhHHHhhcccccchHH--------HHHHHHHHHHHHHHHHHhh
Q 018202 103 EKEDAKNQEERLSMEVRSLLVAGT---ALSVARKRLQESNRLLAGEKGYGHLQ--------KLQKMLRMRQQFMISQVSF 171 (359)
Q Consensus 103 ~~~~~~~rre~L~~~ir~l~~~~~---~l~~a~~~Lqe~~~~L~~e~~~~~L~--------~lq~~L~~rr~~lv~qL~~ 171 (359)
.-++++.+++++-.+++.++.-.. +|.++-.-|......+.+ +.+-|. .+...|+..-|.|++|-..
T Consensus 1075 R~~eikaar~~~Y~~L~~lLrPL~~FvGLRaa~~~l~~L~~sip~--~~~~l~~~~~~AP~~V~~alrsdLW~Lf~QYRe 1152 (3095)
T PHA03246 1075 RYAEVKAAVDGLYSSIRKLLRPLQNFAGLRALDSTVKTITDSIPP--GMGSFESFLASAPPDVIGALRSDLWVLFTQYKT 1152 (3095)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHhhcCC--ccccHHHHHHhCCchhHHHHHHHHHHHHHHHHH
Confidence 999999999999999988764432 333333333333333322 222221 5667778888888888766
Q ss_pred hc
Q 018202 172 LY 173 (359)
Q Consensus 172 Iy 173 (359)
+.
T Consensus 1153 aL 1154 (3095)
T PHA03246 1153 IL 1154 (3095)
T ss_pred HH
Confidence 64
No 37
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=78.49 E-value=81 Score=35.29 Aligned_cols=45 Identities=24% Similarity=0.283 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 018202 75 RSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVR 119 (359)
Q Consensus 75 ~~~~l~~~~~rl~~~~~~~~~~~~~~r~~~~~~~~rre~L~~~ir 119 (359)
.+.++.+.+..++.....+++.+.+.++..+++++++++|..+.+
T Consensus 521 li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~ 565 (782)
T PRK00409 521 LIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEED 565 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444555555555555555555555555555555443
No 38
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=77.90 E-value=36 Score=27.62 Aligned_cols=28 Identities=18% Similarity=0.309 Sum_probs=18.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018202 43 SLSSALSQADDKKQTLQQKLQSLIQVKA 70 (359)
Q Consensus 43 ~L~~~iq~a~~~~~~L~~qI~~~le~~~ 70 (359)
+|+.+++......++|+..++.-++...
T Consensus 5 ~le~al~rL~~aid~LE~~v~~r~~~~~ 32 (89)
T PF13747_consen 5 SLEAALTRLEAAIDRLEKAVDRRLERDR 32 (89)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3556666677777777777777776543
No 39
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=77.03 E-value=1.7e+02 Score=34.92 Aligned_cols=33 Identities=12% Similarity=0.165 Sum_probs=13.8
Q ss_pred hhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Q 018202 31 WEDYDQELARLWSLSSALSQADDKKQTLQQKLQ 63 (359)
Q Consensus 31 ~~~~~~~l~rL~~L~~~iq~a~~~~~~L~~qI~ 63 (359)
.++|+..|..|+..-..+..|.......+.+++
T Consensus 853 L~~y~~~l~~l~~~~~~L~~A~~~~~~a~~~le 885 (1353)
T TIGR02680 853 LKRFGDHLHTLEVAVRELRHAATRAAEQRARAA 885 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344554444444333333344444344444433
No 40
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=76.93 E-value=1.3e+02 Score=35.68 Aligned_cols=18 Identities=22% Similarity=0.250 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018202 48 LSQADDKKQTLQQKLQSL 65 (359)
Q Consensus 48 iq~a~~~~~~L~~qI~~~ 65 (359)
+.+.....+.++.+|+.+
T Consensus 845 ~e~l~~e~e~~~~eI~~L 862 (1311)
T TIGR00606 845 IELNRKLIQDQQEQIQHL 862 (1311)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444444
No 41
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=76.56 E-value=49 Score=28.50 Aligned_cols=88 Identities=18% Similarity=0.269 Sum_probs=48.8
Q ss_pred hhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHH
Q 018202 33 DYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKM--SMRSKVEKEDAKNQ 110 (359)
Q Consensus 33 ~~~~~l~rL~~L~~~iq~a~~~~~~L~~qI~~~le~~~~~~~~~~~l~~~~~rl~~~~~~~~~~--~~~~r~~~~~~~~r 110 (359)
..++-++.+-.|..-++.....+.+++.+++++-.+..+ ++.+++=.. +-..++.+ ......+..+++.|
T Consensus 7 ~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~E-le~l~eD~~-------vYk~VG~llvk~~k~~~~~eL~er 78 (119)
T COG1382 7 EVQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEE-LEKLDEDAP-------VYKKVGNLLVKVSKEEAVDELEER 78 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCcccH-------HHHHhhhHHhhhhHHHHHHHHHHH
Confidence 345566677777777777777777777777764444321 121111111 11112211 12345667778888
Q ss_pred HHHHHHHHHHHHHhchhH
Q 018202 111 EERLSMEVRSLLVAGTAL 128 (359)
Q Consensus 111 re~L~~~ir~l~~~~~~l 128 (359)
+|.|..++.++...-+.+
T Consensus 79 ~E~Le~ri~tLekQe~~l 96 (119)
T COG1382 79 KETLELRIKTLEKQEEKL 96 (119)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888876665554443
No 42
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.10 E-value=86 Score=33.18 Aligned_cols=54 Identities=20% Similarity=0.323 Sum_probs=25.7
Q ss_pred cccchhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 018202 27 KVIEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERL 86 (359)
Q Consensus 27 ~~~~~~~~~~~l~rL~~L~~~iq~a~~~~~~L~~qI~~~le~~~~~~~~~~~l~~~~~rl 86 (359)
-++.|+|+++ ||-==+.-.+...+....+..++.++ +++.++-...|++++.|.
T Consensus 332 pvvGF~dL~~---R~K~Q~q~~~~~r~ri~~i~e~v~eL---qk~~ad~~~KI~~~k~r~ 385 (508)
T KOG3091|consen 332 PVVGFEDLRQ---RLKVQDQEVKQHRIRINAIGERVTEL---QKHHADAVAKIEEAKNRH 385 (508)
T ss_pred eccchHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhhhHHHHHHHHHHHH
Confidence 3445999996 32222222333333333333333322 234445666666666664
No 43
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=75.65 E-value=1.7e+02 Score=34.22 Aligned_cols=9 Identities=22% Similarity=0.290 Sum_probs=4.7
Q ss_pred CcceeecCC
Q 018202 268 SHTYINDYA 276 (359)
Q Consensus 268 SrSyI~D~i 276 (359)
|.-||.|.|
T Consensus 1089 aPf~vLDEV 1097 (1163)
T COG1196 1089 APFYVLDEV 1097 (1163)
T ss_pred CCeeeeccc
Confidence 334556665
No 44
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=75.00 E-value=1.1e+02 Score=35.81 Aligned_cols=18 Identities=28% Similarity=0.386 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHhcCCC
Q 018202 316 VFLLNKDIEQLLNYIGVK 333 (359)
Q Consensus 316 V~LLNknI~qL~~~~Gl~ 333 (359)
+.=|||-++.++..+..+
T Consensus 1733 L~~Le~r~~~vl~~I~~r 1750 (1758)
T KOG0994|consen 1733 LAGLEKRVESVLDHINER 1750 (1758)
T ss_pred hhhHHHHHHHHHHHHhhh
Confidence 444677777666655433
No 45
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=74.78 E-value=81 Score=33.95 Aligned_cols=36 Identities=19% Similarity=0.131 Sum_probs=21.9
Q ss_pred CCCccccchhhhHHHHHHHhcHHHHHHHHHHHHHHH
Q 018202 23 PENVKVIEWEDYDQELARLWSLSSALSQADDKKQTL 58 (359)
Q Consensus 23 ~~~~~~~~~~~~~~~l~rL~~L~~~iq~a~~~~~~L 58 (359)
.-+|+.=+|+.+.++-.||+|...-.+......+.|
T Consensus 199 ~~~l~~gE~e~L~~e~~rLsn~ekl~~~~~~a~~~L 234 (557)
T COG0497 199 ELNLQPGEDEELEEERKRLSNSEKLAEAIQNALELL 234 (557)
T ss_pred hcCCCCchHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 334445568888888777777666554444444444
No 46
>PRK09343 prefoldin subunit beta; Provisional
Probab=74.61 E-value=53 Score=27.96 Aligned_cols=30 Identities=20% Similarity=0.261 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhchhHH
Q 018202 100 SKVEKEDAKNQEERLSMEVRSLLVAGTALS 129 (359)
Q Consensus 100 ~r~~~~~~~~rre~L~~~ir~l~~~~~~l~ 129 (359)
...+..++.+|.+.+..+|.++......+.
T Consensus 69 ~~e~~~~l~~r~E~ie~~ik~lekq~~~l~ 98 (121)
T PRK09343 69 KTKVEKELKERKELLELRSRTLEKQEKKLR 98 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666777777776665555544443
No 47
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=74.47 E-value=61 Score=33.62 Aligned_cols=28 Identities=14% Similarity=0.027 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccceeeC
Q 018202 152 QKLQKMLRMRQQFMISQVSFLYPVKILV 179 (359)
Q Consensus 152 ~~lq~~L~~rr~~lv~qL~~IyPI~~~~ 179 (359)
..++.+-+.+|..+-.+|+.+|--...+
T Consensus 104 ~~l~~q~r~qr~~La~~L~A~~r~g~~p 131 (420)
T COG4942 104 NALEVQEREQRRRLAEQLAALQRSGRNP 131 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 3355555888888888998888765443
No 48
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.25 E-value=43 Score=26.30 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018202 44 LSSALSQADDKKQTLQQKLQSLIQVK 69 (359)
Q Consensus 44 L~~~iq~a~~~~~~L~~qI~~~le~~ 69 (359)
|..-||.|..+..-|+=.|+++=+.+
T Consensus 9 LE~KiqqAvdTI~LLQmEieELKEkn 34 (79)
T COG3074 9 LEAKVQQAIDTITLLQMEIEELKEKN 34 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555555555555544443
No 49
>PLN03188 kinesin-12 family protein; Provisional
Probab=72.57 E-value=2.1e+02 Score=33.90 Aligned_cols=40 Identities=15% Similarity=0.208 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhHHHHHHH
Q 018202 44 LSSALSQADDKKQT-------LQQKLQSLIQVKAESLKRSNELEEMR 83 (359)
Q Consensus 44 L~~~iq~a~~~~~~-------L~~qI~~~le~~~~~~~~~~~l~~~~ 83 (359)
|++|+|.|..=.++ |+.+-+++|+..+.-.+-+++++.+-
T Consensus 1098 l~~a~q~am~ghar~~e~ya~l~ek~~~ll~~hr~i~egi~dvkkaa 1144 (1320)
T PLN03188 1098 LKEAMQMAMEGHARMLEQYADLEEKHIQLLARHRRIQEGIDDVKKAA 1144 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566665544333 44444444444443334444444333
No 50
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=72.02 E-value=1.4e+02 Score=33.78 Aligned_cols=45 Identities=22% Similarity=0.314 Sum_probs=24.2
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 018202 42 WSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERL 86 (359)
Q Consensus 42 ~~L~~~iq~a~~~~~~L~~qI~~~le~~~~~~~~~~~l~~~~~rl 86 (359)
+-+..++.+|..+.+.+..+.+++-..+..++..+..|.+..+.+
T Consensus 333 adirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nv 377 (1265)
T KOG0976|consen 333 ADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENV 377 (1265)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 445556666666666666666665555544443444444444433
No 51
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=71.61 E-value=2e+02 Score=33.30 Aligned_cols=129 Identities=20% Similarity=0.246 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHhhHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHH
Q 018202 45 SSALSQADDKKQTLQQKLQSLIQVKA-------------ESLKRSNELEEMRERLEARRLLMEKMSMRS---KVEKEDAK 108 (359)
Q Consensus 45 ~~~iq~a~~~~~~L~~qI~~~le~~~-------------~~~~~~~~l~~~~~rl~~~~~~~~~~~~~~---r~~~~~~~ 108 (359)
+.+|+|.-.+.++|.+.+...=+.+- +.......++++++.++.....+.++.... ...++.+.
T Consensus 403 ~~llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~ 482 (1041)
T KOG0243|consen 403 KTLLKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLK 482 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 45677777777777777665433221 111234445555555544333333322222 22233444
Q ss_pred HHHHHHHHHH----HHHHHhchhHHHHHHHhHHhHHHhhc-ccccchHHHHHHHHHHHHHHHHHHHhhhc
Q 018202 109 NQEERLSMEV----RSLLVAGTALSVARKRLQESNRLLAG-EKGYGHLQKLQKMLRMRQQFMISQVSFLY 173 (359)
Q Consensus 109 ~rre~L~~~i----r~l~~~~~~l~~a~~~Lqe~~~~L~~-e~~~~~L~~lq~~L~~rr~~lv~qL~~Iy 173 (359)
.+++.++..+ ..+...-..+..++..|.+.....+. +.....+.+....++..-..+..+++.+|
T Consensus 483 ~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s~l~ 552 (1041)
T KOG0243|consen 483 EEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDDLSSLF 552 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555554444 44444445555555555544333322 12222233444445555555566666666
No 52
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=71.48 E-value=65 Score=27.63 Aligned_cols=68 Identities=21% Similarity=0.288 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHhHHhHHHhh
Q 018202 76 SNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLA 143 (359)
Q Consensus 76 ~~~l~~~~~rl~~~~~~~~~~~~~~r~~~~~~~~rre~L~~~ir~l~~~~~~l~~a~~~Lqe~~~~L~ 143 (359)
+..+..++..+...+..+..+......+...+...+.....+...+......+......|.+.+.+|.
T Consensus 58 ~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh 125 (132)
T PF07926_consen 58 IKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLH 125 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444454444444444444444444444433333333333333333444444555555566553
No 53
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=71.14 E-value=1.6e+02 Score=34.58 Aligned_cols=17 Identities=12% Similarity=0.051 Sum_probs=7.6
Q ss_pred hHHHHHHHHHHHHHHHH
Q 018202 311 RAAYAVFLLNKDIEQLL 327 (359)
Q Consensus 311 ~F~yaV~LLNknI~qL~ 327 (359)
..+.++...+....++.
T Consensus 782 ~le~~l~~~~~~~~~~~ 798 (1293)
T KOG0996|consen 782 KLERALSKMSDKARQHQ 798 (1293)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444443
No 54
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=71.07 E-value=2.1e+02 Score=33.24 Aligned_cols=50 Identities=20% Similarity=0.290 Sum_probs=38.6
Q ss_pred hhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 018202 31 WEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELE 80 (359)
Q Consensus 31 ~~~~~~~l~rL~~L~~~iq~a~~~~~~L~~qI~~~le~~~~~~~~~~~l~ 80 (359)
|-..=.-=+-|.++..-|+...++..+++.+|+.......++.....+++
T Consensus 273 W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teie 322 (1074)
T KOG0250|consen 273 WAWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIE 322 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 76665556678889999999999999999999999988766553333333
No 55
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=70.86 E-value=2.4e+02 Score=34.99 Aligned_cols=19 Identities=5% Similarity=0.004 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 018202 154 LQKMLRMRQQFMISQVSFL 172 (359)
Q Consensus 154 lq~~L~~rr~~lv~qL~~I 172 (359)
....+...++.+..++..+
T Consensus 1119 ~r~K~ek~r~dL~~ele~l 1137 (1930)
T KOG0161|consen 1119 SRAKAERQRRDLSEELEEL 1137 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344555566666666443
No 56
>PRK10869 recombination and repair protein; Provisional
Probab=70.49 E-value=1.6e+02 Score=31.59 Aligned_cols=42 Identities=24% Similarity=0.249 Sum_probs=29.6
Q ss_pred ccccCCCCccccchhhhHHHHHHHhcHHHHHHHHHHHHHHHH
Q 018202 18 SKAIDPENVKVIEWEDYDQELARLWSLSSALSQADDKKQTLQ 59 (359)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~l~rL~~L~~~iq~a~~~~~~L~ 59 (359)
..-++.-+|+.-+|++++++..+|.|-..-.+.+....+.|.
T Consensus 194 l~Ei~~~~l~~gE~eeL~~e~~~L~n~e~i~~~~~~~~~~L~ 235 (553)
T PRK10869 194 LKELNEFAPQPGEFEQIDEEYKRLANSGQLLTTSQNALQLLA 235 (553)
T ss_pred HHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344566677777899999988888887766666555555553
No 57
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=70.15 E-value=1e+02 Score=29.25 Aligned_cols=32 Identities=6% Similarity=0.062 Sum_probs=15.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 018202 91 LLMEKMSMRSKVEKEDAKNQEERLSMEVRSLL 122 (359)
Q Consensus 91 ~~~~~~~~~~r~~~~~~~~rre~L~~~ir~l~ 122 (359)
..++.+..+..+.....+++.++|..++..+.
T Consensus 66 e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 66 ENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444555555555555554444
No 58
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=69.85 E-value=83 Score=28.16 Aligned_cols=17 Identities=18% Similarity=0.106 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHhh
Q 018202 155 QKMLRMRQQFMISQVSF 171 (359)
Q Consensus 155 q~~L~~rr~~lv~qL~~ 171 (359)
+..+..-|+.+++++..
T Consensus 132 ~~a~~elk~eii~~~~~ 148 (167)
T PRK08475 132 RKMEREVVEEVLNELFE 148 (167)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555566666766643
No 59
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=69.70 E-value=56 Score=26.16 Aligned_cols=13 Identities=31% Similarity=0.486 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHH
Q 018202 56 QTLQQKLQSLIQV 68 (359)
Q Consensus 56 ~~L~~qI~~~le~ 68 (359)
++|+.+|+.+++.
T Consensus 7 eqLE~KIqqAvdt 19 (79)
T PRK15422 7 EKLEAKVQQAIDT 19 (79)
T ss_pred HHHHHHHHHHHHH
Confidence 3444455444444
No 60
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=69.36 E-value=1.9e+02 Score=32.18 Aligned_cols=18 Identities=33% Similarity=0.497 Sum_probs=11.2
Q ss_pred HHHHHHhHHhHHHhhccc
Q 018202 129 SVARKRLQESNRLLAGEK 146 (359)
Q Consensus 129 ~~a~~~Lqe~~~~L~~e~ 146 (359)
..+.++|.|+-+.|..|+
T Consensus 152 ~iae~qleEALesl~~ER 169 (717)
T PF09730_consen 152 EIAEKQLEEALESLKSER 169 (717)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345666777766666653
No 61
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=69.32 E-value=1.6e+02 Score=31.81 Aligned_cols=35 Identities=6% Similarity=0.319 Sum_probs=30.6
Q ss_pred hhhhHHHHHHHhc-HHHHHHHHHHHHHHHHHHHHHH
Q 018202 31 WEDYDQELARLWS-LSSALSQADDKKQTLQQKLQSL 65 (359)
Q Consensus 31 ~~~~~~~l~rL~~-L~~~iq~a~~~~~~L~~qI~~~ 65 (359)
|++|++.|....+ +.+-|.+...+.+.|..+|+++
T Consensus 219 ~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ 254 (581)
T KOG0995|consen 219 EDELKHRLEKYFTSIANEIEDLKKTNRELEEMINER 254 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888888 7888999999999999998844
No 62
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=68.59 E-value=68 Score=33.79 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018202 47 ALSQADDKKQTLQQKLQSLIQVKAES 72 (359)
Q Consensus 47 ~iq~a~~~~~~L~~qI~~~le~~~~~ 72 (359)
.|...-.+...++++++.++..++..
T Consensus 60 TlrTlva~~k~~r~~~~~l~~~N~~l 85 (472)
T TIGR03752 60 TLRTLVAEVKELRKRLAKLISENEAL 85 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555433
No 63
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=68.55 E-value=1.1e+02 Score=32.01 Aligned_cols=14 Identities=21% Similarity=0.233 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 018202 54 KKQTLQQKLQSLIQ 67 (359)
Q Consensus 54 ~~~~L~~qI~~~le 67 (359)
..++.....+..++
T Consensus 348 qlen~k~~~e~~~~ 361 (493)
T KOG0804|consen 348 QLENQKQYYELLIT 361 (493)
T ss_pred HHHhHHHHHHHHHH
Confidence 33444444444444
No 64
>PRK10884 SH3 domain-containing protein; Provisional
Probab=68.16 E-value=58 Score=30.48 Aligned_cols=35 Identities=23% Similarity=0.399 Sum_probs=17.9
Q ss_pred hhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHH
Q 018202 31 WEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLI 66 (359)
Q Consensus 31 ~~~~~~~l~rL~~L~~~iq~a~~~~~~L~~qI~~~l 66 (359)
|-.=+ .|..--++..-+.++..+.+.|+++++.+-
T Consensus 79 WV~~~-~Ls~~p~~~~rlp~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 79 WIPLK-QLSTTPSLRTRVPDLENQVKTLTDKLNNID 113 (206)
T ss_pred eEEHH-HhcCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44333 344444455555555555555655555544
No 65
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=68.15 E-value=1e+02 Score=28.65 Aligned_cols=53 Identities=17% Similarity=0.308 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHhchhHHHHHHHhHHhHHHhhcccc--cchHHHHHHHHHHHH
Q 018202 110 QEERLSMEVRSLLVAGTALSVARKRLQESNRLLAGEKG--YGHLQKLQKMLRMRQ 162 (359)
Q Consensus 110 rre~L~~~ir~l~~~~~~l~~a~~~Lqe~~~~L~~e~~--~~~L~~lq~~L~~rr 162 (359)
|-..|+..++-....-......++..++.-..|+.|+. ..+|..++++++.-+
T Consensus 127 ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq 181 (192)
T PF11180_consen 127 RANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQ 181 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444433333333333444444444444444432 223555555554433
No 66
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=68.10 E-value=2.6e+02 Score=33.16 Aligned_cols=29 Identities=3% Similarity=-0.083 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhccceeeCCC
Q 018202 153 KLQKMLRMRQQFMISQVSFLYPVKILVGP 181 (359)
Q Consensus 153 ~lq~~L~~rr~~lv~qL~~IyPI~~~~~~ 181 (359)
.........|..++.+++.-|+|..++.+
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (1311)
T TIGR00606 357 DRHQEHIRARDSLIQSLATRLELDGFERG 385 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcCCCCCc
Confidence 34445567788899999999998876544
No 67
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=67.29 E-value=94 Score=27.84 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 018202 44 LSSALSQADDKKQTLQQKLQS 64 (359)
Q Consensus 44 L~~~iq~a~~~~~~L~~qI~~ 64 (359)
+...++++..+...++..+.+
T Consensus 86 ~~~~l~~l~~el~~l~~~~~~ 106 (191)
T PF04156_consen 86 LQQQLQQLQEELDQLQERIQE 106 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444333
No 68
>PHA03247 large tegument protein UL36; Provisional
Probab=67.20 E-value=1.4e+02 Score=37.90 Aligned_cols=141 Identities=21% Similarity=0.164 Sum_probs=85.0
Q ss_pred hhHHHHHHHhcHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHH--hhHH-HHHHHHHHHHHH
Q 018202 33 DYDQELARLWSLSSALSQADDKKQ-------------------TLQQKLQSLIQVKAESLK--RSNE-LEEMRERLEARR 90 (359)
Q Consensus 33 ~~~~~l~rL~~L~~~iq~a~~~~~-------------------~L~~qI~~~le~~~~~~~--~~~~-l~~~~~rl~~~~ 90 (359)
...-+|.|+.-|+.++.++...-. .+-+--++++.+-+..-. ..++ -.+.+.||+.++
T Consensus 911 S~~AeL~RF~~LsAAv~qa~~~~~~~~p~~~~~~~~~~~~l~~~~~r~aed~vrqak~l~~~~~~~~Ls~e~r~rl~~r~ 990 (3151)
T PHA03247 911 SGLAELERFEALDAALRQELESEAAFVPAPGAAPYADAGGLSPETRRLAEDALRQAKAMAAAKLTDELSPEARERLRARA 990 (3151)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhhhhcCcccccccccccccchHHHHHHHHHHHHHHHHhhhhhhhcccCHHHHHHHHHHH
Confidence 445567899999999988876322 222223333333221111 1111 126778899999
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhc---hhHHHHHHHhHHhHHHhhcccccch---H---HHHHHHHHHH
Q 018202 91 LLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAG---TALSVARKRLQESNRLLAGEKGYGH---L---QKLQKMLRMR 161 (359)
Q Consensus 91 ~~~~~~~~~~r~~~~~~~~rre~L~~~ir~l~~~~---~~l~~a~~~Lqe~~~~L~~e~~~~~---L---~~lq~~L~~r 161 (359)
..++.+....|...++++.+++++-.+++.++.-. -+|.++-.-|......+-++-+... . ..+...|+..
T Consensus 991 ~evEt~~~~aR~r~~~i~~~r~~~y~~L~~lLrPl~~FvGLRaa~~~l~~L~~~ip~~~~~l~~~~~~AP~~V~~~l~sd 1070 (3151)
T PHA03247 991 RAIEAMLEEARERAEAARAARERFFQKLQGVLRPLPDFGGLRAAPAVLATLRADLPGGWTDLPDAAQAAPPEVRAALRAD 1070 (3151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccHhHHHHHHhhcccccccHHHHHHhCChhhHHHHHHH
Confidence 99999999999999999999999999998876433 2333443333333333322211110 0 1556677777
Q ss_pred HHHHHHHHhhhc
Q 018202 162 QQFMISQVSFLY 173 (359)
Q Consensus 162 r~~lv~qL~~Iy 173 (359)
-|.+++|...+.
T Consensus 1071 LW~Lf~QYReaL 1082 (3151)
T PHA03247 1071 LWGLLGQYREAL 1082 (3151)
T ss_pred HHHHHHHHHHHH
Confidence 788888776553
No 69
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=66.81 E-value=2.6e+02 Score=32.81 Aligned_cols=26 Identities=23% Similarity=0.466 Sum_probs=19.3
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHH
Q 018202 39 ARLWSLSSALSQADDKKQTLQQKLQS 64 (359)
Q Consensus 39 ~rL~~L~~~iq~a~~~~~~L~~qI~~ 64 (359)
.+|..+...|+.+..+.+.++.++..
T Consensus 607 ~~l~~~~~~l~~~~~~~~~~e~~l~~ 632 (1201)
T PF12128_consen 607 ERLEQAEDQLQSAEERQEELEKQLKQ 632 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888888887777777644
No 70
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=66.51 E-value=91 Score=27.39 Aligned_cols=40 Identities=25% Similarity=0.234 Sum_probs=19.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHhHH
Q 018202 98 MRSKVEKEDAKNQEERLSMEVRSLLV-AGTALSVARKRLQE 137 (359)
Q Consensus 98 ~~~r~~~~~~~~rre~L~~~ir~l~~-~~~~l~~a~~~Lqe 137 (359)
.....+...-+++.++|..+...++. +...|.+...+|..
T Consensus 71 ~~~~~~l~~re~~i~rL~~ENe~lR~Wa~t~LPd~V~RL~~ 111 (135)
T TIGR03495 71 AQARALLAQREQRIERLKRENEDLRRWADTPLPDDVIRLRQ 111 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHcCHHHHHHhcCCCcHHHHHHhc
Confidence 33444444445555566655554442 23455555555554
No 71
>PRK02224 chromosome segregation protein; Provisional
Probab=65.54 E-value=2.3e+02 Score=31.63 Aligned_cols=6 Identities=33% Similarity=0.185 Sum_probs=3.2
Q ss_pred eeecCC
Q 018202 271 YINDYA 276 (359)
Q Consensus 271 yI~D~i 276 (359)
+|.|.+
T Consensus 815 ~ilDEp 820 (880)
T PRK02224 815 LILDEP 820 (880)
T ss_pred eEecCC
Confidence 456664
No 72
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=65.49 E-value=57 Score=34.32 Aligned_cols=27 Identities=11% Similarity=0.158 Sum_probs=14.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018202 43 SLSSALSQADDKKQTLQQKLQSLIQVK 69 (359)
Q Consensus 43 ~L~~~iq~a~~~~~~L~~qI~~~le~~ 69 (359)
+|-..+++...+.+.|.++=+.+.+++
T Consensus 63 Tlva~~k~~r~~~~~l~~~N~~l~~eN 89 (472)
T TIGR03752 63 TLVAEVKELRKRLAKLISENEALKAEN 89 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555444
No 73
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=65.33 E-value=2e+02 Score=30.95 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 018202 45 SSALSQADDKKQTLQQKLQSL 65 (359)
Q Consensus 45 ~~~iq~a~~~~~~L~~qI~~~ 65 (359)
...+.....+...|..+.+++
T Consensus 177 ~~eL~~~~ee~e~L~~~~kel 197 (546)
T PF07888_consen 177 EAELEQEEEEMEQLKQQQKEL 197 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444443333
No 74
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=65.26 E-value=2.2e+02 Score=31.33 Aligned_cols=18 Identities=11% Similarity=0.122 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHhcCCCC
Q 018202 317 FLLNKDIEQLLNYIGVKS 334 (359)
Q Consensus 317 ~LLNknI~qL~~~~Gl~~ 334 (359)
.-+.-|+++.+...|-++
T Consensus 561 Tt~a~nLA~~lA~~g~rv 578 (754)
T TIGR01005 561 SDIEANAAALIASGGKRA 578 (754)
T ss_pred hHHHHHHHHHHHhCCCeE
Confidence 334556666666666444
No 75
>PRK12705 hypothetical protein; Provisional
Probab=65.21 E-value=2e+02 Score=30.75 Aligned_cols=12 Identities=17% Similarity=0.036 Sum_probs=5.3
Q ss_pred HHHhcCCCCCCc
Q 018202 251 IASYLEVPLRYP 262 (359)
Q Consensus 251 ls~yL~vpLpYp 262 (359)
++..||+.-..|
T Consensus 294 a~~~lgi~~~~~ 305 (508)
T PRK12705 294 VLEELGIFDLKP 305 (508)
T ss_pred HHHHhccccccH
Confidence 344455544333
No 76
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=64.78 E-value=2.1e+02 Score=30.88 Aligned_cols=33 Identities=15% Similarity=0.159 Sum_probs=23.1
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018202 41 LWSLSSALSQADDKKQTLQQKLQSLIQVKAESL 73 (359)
Q Consensus 41 L~~L~~~iq~a~~~~~~L~~qI~~~le~~~~~~ 73 (359)
|.++-..|.++...+++++.+|..+=+...++.
T Consensus 94 l~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr 126 (546)
T KOG0977|consen 94 LATARKLLDETARERAKLEIEITKLREELKELR 126 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 455667788888888888888777766555443
No 77
>PLN03086 PRLI-interacting factor K; Provisional
Probab=64.54 E-value=37 Score=36.59 Aligned_cols=43 Identities=35% Similarity=0.303 Sum_probs=30.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHH-HHHhchhHHHHHHHhHHhHH
Q 018202 98 MRSKVEKEDAKNQEERLSMEVRS-LLVAGTALSVARKRLQESNR 140 (359)
Q Consensus 98 ~~~r~~~~~~~~rre~L~~~ir~-l~~~~~~l~~a~~~Lqe~~~ 140 (359)
.+.|++++++.+|+|++.+..++ ...+..+...|+++.+|...
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (567)
T PLN03086 28 ERERKAKEEAAKQREAIEAAQRSRRLDAIEAQIKADQQMQESLQ 71 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34777888888999887776643 34555666677888877643
No 78
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=64.37 E-value=1.1e+02 Score=31.05 Aligned_cols=36 Identities=22% Similarity=0.246 Sum_probs=23.8
Q ss_pred hHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018202 34 YDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVK 69 (359)
Q Consensus 34 ~~~~l~rL~~L~~~iq~a~~~~~~L~~qI~~~le~~ 69 (359)
++++-.-..++..++.++.....+|...|...|+.-
T Consensus 222 leqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI 257 (359)
T PF10498_consen 222 LEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKI 257 (359)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 444444445666667777777777888877777754
No 79
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=63.59 E-value=1.6e+02 Score=29.25 Aligned_cols=8 Identities=25% Similarity=0.924 Sum_probs=5.3
Q ss_pred hhhhHHHH
Q 018202 31 WEDYDQEL 38 (359)
Q Consensus 31 ~~~~~~~l 38 (359)
|++-+-.|
T Consensus 134 WYeWR~kl 141 (312)
T smart00787 134 WYEWRMKL 141 (312)
T ss_pred HHHHHHHH
Confidence 88877443
No 80
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=63.44 E-value=1.9e+02 Score=29.88 Aligned_cols=36 Identities=25% Similarity=0.190 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhchhHHHHHHHhHHhHH
Q 018202 105 EDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNR 140 (359)
Q Consensus 105 ~~~~~rre~L~~~ir~l~~~~~~l~~a~~~Lqe~~~ 140 (359)
+.++.+...|..++..+......+.....++.+...
T Consensus 345 ~~l~~~~~~L~~~~~~l~~~~~~~~~~~~~l~~L~R 380 (458)
T COG3206 345 ALLEQQEAALEKELAQLKGRLSKLPKLQVQLRELER 380 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhchHhhhHHHHHHH
Confidence 334455555555555555555555555555554433
No 81
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=62.96 E-value=2.9e+02 Score=32.01 Aligned_cols=22 Identities=9% Similarity=0.052 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhcC
Q 018202 310 TRAAYAVFLLNKDIEQLLNYIG 331 (359)
Q Consensus 310 ~~F~yaV~LLNknI~qL~~~~G 331 (359)
..|.-+-+-|++|.+++...-.
T Consensus 815 ~s~sse~esl~rDl~a~~rels 836 (1195)
T KOG4643|consen 815 KSCSSECESLRRDLVATRRELS 836 (1195)
T ss_pred hhhcchhhhhhhhHHHhhhhhh
Confidence 3677788889999887765443
No 82
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=62.36 E-value=1.7e+02 Score=29.04 Aligned_cols=65 Identities=14% Similarity=0.174 Sum_probs=36.5
Q ss_pred HHHhHHHHHHHHHHHHHHhc--CCCCCCceeecCCcceeecCCCCCCCCCcccccccccCCCCCcccCcccCCCchhhHH
Q 018202 236 RSATALGYIAHVVSLIASYL--EVPLRYPLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKPAEFPLFLEGQDATRAA 313 (359)
Q Consensus 236 ~isaALGyvAhlv~lls~yL--~vpLpYpi~~~gSrSyI~D~i~~~~~ss~~~~~~~~~~~~~~r~fPLy~~~~d~~~F~ 313 (359)
.+-+=|.++.++...+..-- .+.|||.|. .|.|.. +|.....+...++.
T Consensus 241 am~~~L~~~~q~~~~~~~~~~~~~~lPy~i~--------~~~I~~---------------------~si~~~~~~~~~WT 291 (314)
T PF04111_consen 241 AMVAFLDCLQQLAEFVEKRDPQSFELPYKID--------KDKIGG---------------------VSIKLQFNSEEEWT 291 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----SS-EC--------TTEECT---------------------CES-STTS-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccccceecc--------CCccCC---------------------eeeeecCCChhHHH
Confidence 45566677777777766555 588999995 233311 12222333455888
Q ss_pred HHHHHHHHHHHHHHHh
Q 018202 314 YAVFLLNKDIEQLLNY 329 (359)
Q Consensus 314 yaV~LLNknI~qL~~~ 329 (359)
.|+..|=-|+-|++..
T Consensus 292 ~AlK~lLtnlKw~l~~ 307 (314)
T PF04111_consen 292 KALKYLLTNLKWLLAW 307 (314)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8999888888887753
No 83
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=62.01 E-value=1.5e+02 Score=28.34 Aligned_cols=62 Identities=13% Similarity=0.115 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHhHH
Q 018202 76 SNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQE 137 (359)
Q Consensus 76 ~~~l~~~~~rl~~~~~~~~~~~~~~r~~~~~~~~rre~L~~~ir~l~~~~~~l~~a~~~Lqe 137 (359)
++++..+-+.+......+.............+..+.+++..-+..+....+.+...+..+..
T Consensus 173 l~~l~~l~~~l~~~~~~i~~ll~~l~~l~~~l~~~~~~l~~~v~~l~~~~~~l~~~~~~l~~ 234 (291)
T TIGR00996 173 LDGLAQLTAALNARDGDIGALIDNLNRVLDVLADRSDQLDRLLDNLATLTAQLADRDDALDD 234 (291)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhChHHHHH
Confidence 33344444444444445555555556666666666666666665555555555444444433
No 84
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=61.64 E-value=2.2e+02 Score=30.23 Aligned_cols=14 Identities=14% Similarity=0.014 Sum_probs=8.9
Q ss_pred ceEEeccccCCCcc
Q 018202 209 SLTILGLHLTILPF 222 (359)
Q Consensus 209 ~~tI~Gl~LP~~~~ 222 (359)
..|+.-++||+..+
T Consensus 202 e~~~~~v~lp~d~~ 215 (514)
T TIGR03319 202 ETTVSVVNLPNDEM 215 (514)
T ss_pred hheeeeEEcCChhh
Confidence 56666677776544
No 85
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=61.41 E-value=1.2e+02 Score=30.56 Aligned_cols=39 Identities=13% Similarity=0.155 Sum_probs=26.7
Q ss_pred hHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018202 34 YDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAES 72 (359)
Q Consensus 34 ~~~~l~rL~~L~~~iq~a~~~~~~L~~qI~~~le~~~~~ 72 (359)
|+..+..+..|+..++.+..+.++|+..++.++.+..+.
T Consensus 132 ~d~~l~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~ 170 (342)
T PF06632_consen 132 FDWCLDANSRLQAENEHLQKENERLESEANKLLKQLEKF 170 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566777777777777777777777777776665433
No 86
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=61.40 E-value=1e+02 Score=26.34 Aligned_cols=74 Identities=19% Similarity=0.292 Sum_probs=45.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 018202 43 SLSSALSQADDKKQTLQQKLQSLIQVKAE-SLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSM 116 (359)
Q Consensus 43 ~L~~~iq~a~~~~~~L~~qI~~~le~~~~-~~~~~~~l~~~~~rl~~~~~~~~~~~~~~r~~~~~~~~rre~L~~ 116 (359)
.++..|+....-.+.+.++|.+.+..+.+ .+.+...+..++.-++.++..++.+....++.+.++-..-+++..
T Consensus 30 d~~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v~~L~~s~~RL~~eV~~Py~~~~~ 104 (132)
T PF10392_consen 30 DISTPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAVRSSVESLQSSYERLRSEVIEPYEKIQK 104 (132)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 45566777777778888899998888765 335666666666655555555555444444444444444333333
No 87
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=61.02 E-value=1.2e+02 Score=28.74 Aligned_cols=33 Identities=24% Similarity=0.213 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhchhHHHHHHHhHH
Q 018202 105 EDAKNQEERLSMEVRSLLVAGTALSVARKRLQE 137 (359)
Q Consensus 105 ~~~~~rre~L~~~ir~l~~~~~~l~~a~~~Lqe 137 (359)
+.+++..++|..+...+..-...+.+..++||+
T Consensus 175 e~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~ 207 (216)
T KOG1962|consen 175 EKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQE 207 (216)
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 334444455555554444444444444555555
No 88
>PRK12704 phosphodiesterase; Provisional
Probab=60.99 E-value=2.3e+02 Score=30.18 Aligned_cols=18 Identities=17% Similarity=0.401 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018202 152 QKLQKMLRMRQQFMISQV 169 (359)
Q Consensus 152 ~~lq~~L~~rr~~lv~qL 169 (359)
..+...++.-...++.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~ 178 (520)
T PRK12704 161 EKVEEEARHEAAVLIKEI 178 (520)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555555555544
No 89
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=60.71 E-value=76 Score=24.48 Aligned_cols=56 Identities=16% Similarity=0.211 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 018202 56 QTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEV 118 (359)
Q Consensus 56 ~~L~~qI~~~le~~~~~~~~~~~l~~~~~rl~~~~~~~~~~~~~~r~~~~~~~~rre~L~~~i 118 (359)
..|+.+|+.+|..-. ++.+--..|..........+......++.+..|-|.+..++
T Consensus 3 ~~Le~kle~Li~~~~-------~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RL 58 (65)
T TIGR02449 3 QALAAQVEHLLEYLE-------RLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRL 58 (65)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356666666666432 11111122333334444444444444555555555555444
No 90
>PF04344 CheZ: Chemotaxis phosphatase, CheZ; InterPro: IPR007439 This family represents the bacterial chemotaxis phosphatase, CheZ. This protein forms a dimer characterised by a long four-helix bundle, composed of two helices from each monomer. CheZ dephosphorylates CheY in a reaction that is essential to maintain a continuous chemotactic response to environmental changes. It is thought that CheZ's conserved residue Gln 147 orientates a water molecule for nucleophilic attack at the CheY active site. ; GO: 0003824 catalytic activity, 0050920 regulation of chemotaxis, 0009288 bacterial-type flagellum; PDB: 1KMI_Z 2FMK_B 2PMC_F.
Probab=60.58 E-value=1.5e+02 Score=27.79 Aligned_cols=29 Identities=14% Similarity=0.252 Sum_probs=9.4
Q ss_pred eccccCCCcccccccCCChhHHHHHHhHHHH
Q 018202 213 LGLHLTILPFTKMSLFTDKKEVQRSATALGY 243 (359)
Q Consensus 213 ~Gl~LP~~~~~~~~~f~~~~~~~~isaALGy 243 (359)
.|..++..... +...+.++++.+-+.|||
T Consensus 186 ~GP~i~~~~~~--dv~~~QddVDdLLssLGF 214 (214)
T PF04344_consen 186 NGPQINGEGRD--DVVSSQDDVDDLLSSLGF 214 (214)
T ss_dssp ------------------HCHHHHHHHHCT-
T ss_pred CCCCCCCCCCC--CCCCCHHHHHHHHHhCCC
Confidence 66666543211 122356667778888886
No 91
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=60.53 E-value=1.8e+02 Score=28.76 Aligned_cols=70 Identities=20% Similarity=0.234 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHhhHHHHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 018202 48 LSQADDKKQTLQQKLQSLIQVKA----ESLKRSNELEEMRER-LEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLL 122 (359)
Q Consensus 48 iq~a~~~~~~L~~qI~~~le~~~----~~~~~~~~l~~~~~r-l~~~~~~~~~~~~~~r~~~~~~~~rre~L~~~ir~l~ 122 (359)
+|+.......|..++.+-...-+ +-.+...++..|++. +++-+.+++. +-+.+++++...+|+.=|..+.
T Consensus 63 LQQKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEA-----QLALKEARkEIkQLkQvieTmr 137 (305)
T PF15290_consen 63 LQQKEVCIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEA-----QLALKEARKEIKQLKQVIETMR 137 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666555444332 233355566666655 6777777766 4455666777777777775433
No 92
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=60.37 E-value=80 Score=24.66 Aligned_cols=15 Identities=20% Similarity=0.388 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHH
Q 018202 55 KQTLQQKLQSLIQVK 69 (359)
Q Consensus 55 ~~~L~~qI~~~le~~ 69 (359)
.+.|+.+|+.++++-
T Consensus 6 l~~LE~ki~~aveti 20 (72)
T PF06005_consen 6 LEQLEEKIQQAVETI 20 (72)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555555543
No 93
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=59.84 E-value=76 Score=27.62 Aligned_cols=53 Identities=30% Similarity=0.498 Sum_probs=18.1
Q ss_pred cccchhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 018202 27 KVIEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRER 85 (359)
Q Consensus 27 ~~~~~~~~~~~l~rL~~L~~~iq~a~~~~~~L~~qI~~~le~~~~~~~~~~~l~~~~~r 85 (359)
.++.|+|+.. |+--=...+.......+.+..++..+ +.. .+.....+.+++.+
T Consensus 28 ~i~GF~dL~~---R~~~Q~~~~~~~~~~l~~i~~~l~~L-~~~--~~~~~~rl~~~r~r 80 (141)
T PF13874_consen 28 PIIGFEDLKK---RVEAQEEEIAQHRERLKEINDKLEEL-QKH--DLETSARLEEARRR 80 (141)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHHHHHH
T ss_pred hhhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH-HHh--HHHHHHHHHHHHHH
Confidence 4556888875 54444555666666666666666655 332 22344444444444
No 94
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=59.17 E-value=3.1e+02 Score=31.05 Aligned_cols=12 Identities=17% Similarity=0.088 Sum_probs=8.8
Q ss_pred eEEeccccCCCc
Q 018202 210 LTILGLHLTILP 221 (359)
Q Consensus 210 ~tI~Gl~LP~~~ 221 (359)
+-+||-++|+..
T Consensus 460 CPvCg~~l~~~~ 471 (908)
T COG0419 460 CPVCGQELPEEH 471 (908)
T ss_pred CCCCCCCCCcHH
Confidence 338998998754
No 95
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=58.63 E-value=1.5e+02 Score=28.90 Aligned_cols=61 Identities=11% Similarity=0.230 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH---HHHHHhchhHHHHHHHhHH
Q 018202 77 NELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEV---RSLLVAGTALSVARKRLQE 137 (359)
Q Consensus 77 ~~l~~~~~rl~~~~~~~~~~~~~~r~~~~~~~~rre~L~~~i---r~l~~~~~~l~~a~~~Lqe 137 (359)
+.+..+.++++..+..++.+......+...+++++.+|.+.- .+|....+++-+-..+|++
T Consensus 169 ~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~ 232 (267)
T PF10234_consen 169 EAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEE 232 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 344444455555555666666666666666666666665543 3444445555555555544
No 96
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=58.63 E-value=3.3e+02 Score=31.57 Aligned_cols=40 Identities=15% Similarity=0.251 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 018202 47 ALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERL 86 (359)
Q Consensus 47 ~iq~a~~~~~~L~~qI~~~le~~~~~~~~~~~l~~~~~rl 86 (359)
-+.++..+.+.|+..-....+.........+...++-+++
T Consensus 231 El~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~ 270 (1200)
T KOG0964|consen 231 ELNEINGELERLEEDRSSAPEESEQYIDALDKVEDESEDL 270 (1200)
T ss_pred HHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHH
Confidence 3556666666666666555555443333333333333333
No 97
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=58.08 E-value=1.1e+02 Score=27.93 Aligned_cols=28 Identities=29% Similarity=0.246 Sum_probs=0.0
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018202 41 LWSLSSALSQADDKKQTLQQKLQSLIQV 68 (359)
Q Consensus 41 L~~L~~~iq~a~~~~~~L~~qI~~~le~ 68 (359)
+..+..-+.++.-++..+..++..+-..
T Consensus 76 ~~~l~~ELael~r~~~el~~~L~~~~~~ 103 (194)
T PF08614_consen 76 LAKLQEELAELYRSKGELAQQLVELNDE 103 (194)
T ss_dssp ----------------------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 3445556666666777777666555443
No 98
>PRK11281 hypothetical protein; Provisional
Probab=57.85 E-value=1e+02 Score=36.02 Aligned_cols=21 Identities=43% Similarity=0.536 Sum_probs=14.5
Q ss_pred hchhHHHHHHHhHHhHHHhhc
Q 018202 124 AGTALSVARKRLQESNRLLAG 144 (359)
Q Consensus 124 ~~~~l~~a~~~Lqe~~~~L~~ 144 (359)
+...+.++++++++.+..|..
T Consensus 161 AQ~~lsea~~RlqeI~~~L~~ 181 (1113)
T PRK11281 161 AQAALYANSQRLQQIRNLLKG 181 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 334566778888888777754
No 99
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=57.85 E-value=2.7e+02 Score=29.87 Aligned_cols=48 Identities=19% Similarity=0.061 Sum_probs=33.3
Q ss_pred hhHHHHHHHhHHhHHHhhcc--cc---cchHHHHHHHHHHHHHHHHHHHhhhc
Q 018202 126 TALSVARKRLQESNRLLAGE--KG---YGHLQKLQKMLRMRQQFMISQVSFLY 173 (359)
Q Consensus 126 ~~l~~a~~~Lqe~~~~L~~e--~~---~~~L~~lq~~L~~rr~~lv~qL~~Iy 173 (359)
..+-+|...|.+.+..|... .. ..-++.+...+...+..+...|...|
T Consensus 122 ~~~~~Aa~~L~~~~~~L~~l~~~~~~~~~i~~~Lk~e~~~lr~~L~~~L~~~w 174 (593)
T PF06248_consen 122 GNYLDAADLLEELKSLLDDLKSSKFEELKILKLLKDEYSELRENLQYQLSEEW 174 (593)
T ss_pred CCHHHHHHHHHHHHHHHHhcCcCcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777778887777652 11 22367888889999999999886555
No 100
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=57.63 E-value=3.1e+02 Score=30.54 Aligned_cols=75 Identities=24% Similarity=0.359 Sum_probs=38.0
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 018202 44 LSSALSQADDK----KQTLQQKLQSLIQVKAESL-KRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEV 118 (359)
Q Consensus 44 L~~~iq~a~~~----~~~L~~qI~~~le~~~~~~-~~~~~l~~~~~rl~~~~~~~~~~~~~~r~~~~~~~~rre~L~~~i 118 (359)
|..+++-..+. .+.-..+|+.-+...+... ++..++.+++++.+.....++++.. ..+++..+.+.|..+.
T Consensus 541 L~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~Lae----R~e~a~d~Qe~L~~R~ 616 (717)
T PF10168_consen 541 LSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAE----RYEEAKDKQEKLMKRV 616 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 44555555433 2333334444444333322 2666666666666555555555333 3466666666676666
Q ss_pred HHHH
Q 018202 119 RSLL 122 (359)
Q Consensus 119 r~l~ 122 (359)
..++
T Consensus 617 ~~vl 620 (717)
T PF10168_consen 617 DRVL 620 (717)
T ss_pred HHHH
Confidence 5443
No 101
>PF15456 Uds1: Up-regulated During Septation
Probab=57.57 E-value=1.3e+02 Score=26.03 Aligned_cols=45 Identities=20% Similarity=0.317 Sum_probs=25.2
Q ss_pred CCCccccchhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018202 23 PENVKVIEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQV 68 (359)
Q Consensus 23 ~~~~~~~~~~~~~~~l~rL~~L~~~iq~a~~~~~~L~~qI~~~le~ 68 (359)
+.+-.++.|++++.-=..+..|+.-|.-+..+.. |+.+|.++...
T Consensus 13 s~~feiLs~eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~s 57 (124)
T PF15456_consen 13 SKEFEILSFEEVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHS 57 (124)
T ss_pred HHcCcccCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 3445577888888433344555555555555444 55555554443
No 102
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=57.53 E-value=1.6e+02 Score=27.26 Aligned_cols=47 Identities=21% Similarity=0.302 Sum_probs=32.2
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 018202 41 LWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLE 87 (359)
Q Consensus 41 L~~L~~~iq~a~~~~~~L~~qI~~~le~~~~~~~~~~~l~~~~~rl~ 87 (359)
--.|..-|+.|..+++.|..++...-..........+.+..++..+.
T Consensus 57 N~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~ 103 (201)
T PF13851_consen 57 NKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELK 103 (201)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578888888888888888888877665544445555555555543
No 103
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=57.29 E-value=2.1e+02 Score=28.48 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018202 46 SALSQADDKKQTLQQKLQSLIQ 67 (359)
Q Consensus 46 ~~iq~a~~~~~~L~~qI~~~le 67 (359)
..+-+...+.+.|..++..+-+
T Consensus 172 ~~~~~l~~~~~~L~~e~~~L~~ 193 (312)
T smart00787 172 SIKPKLRDRKDALEEELRQLKQ 193 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444445554444333
No 104
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=57.29 E-value=3.4e+02 Score=30.91 Aligned_cols=21 Identities=10% Similarity=0.180 Sum_probs=10.2
Q ss_pred HHhcHHHHHHHHHHHHHHHHH
Q 018202 40 RLWSLSSALSQADDKKQTLQQ 60 (359)
Q Consensus 40 rL~~L~~~iq~a~~~~~~L~~ 60 (359)
++-++|+-++|+..+++-+.-
T Consensus 345 k~egfddk~~eLEKkrd~al~ 365 (1265)
T KOG0976|consen 345 KAEGFDDKLNELEKKRDMALM 365 (1265)
T ss_pred hhcchhHHHHHHHHHHHHHHH
Confidence 344555555555544444443
No 105
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=57.01 E-value=2.6e+02 Score=29.57 Aligned_cols=114 Identities=19% Similarity=0.257 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHhhHHHHHHHHHH--------------HHHHHHHHHHHHhhHHHHHHHHHH
Q 018202 48 LSQADDKKQTLQQKLQSL---IQVKAESLKRSNELEEMRERL--------------EARRLLMEKMSMRSKVEKEDAKNQ 110 (359)
Q Consensus 48 iq~a~~~~~~L~~qI~~~---le~~~~~~~~~~~l~~~~~rl--------------~~~~~~~~~~~~~~r~~~~~~~~r 110 (359)
||++.-++--|+++|+++ +-..+...+.+|++++--+.| +-...-+....+..++..++.+..
T Consensus 333 IqdLq~sN~yLe~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~e 412 (527)
T PF15066_consen 333 IQDLQCSNLYLEKKVKELQMKITKQQVFVDIINKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNE 412 (527)
T ss_pred HHHhhhccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred HHHHHHHHHHHHHhchhHHHH-HHHhHHhHHHhhc-----------ccccchHHHHHHHHHHH
Q 018202 111 EERLSMEVRSLLVAGTALSVA-RKRLQESNRLLAG-----------EKGYGHLQKLQKMLRMR 161 (359)
Q Consensus 111 re~L~~~ir~l~~~~~~l~~a-~~~Lqe~~~~L~~-----------e~~~~~L~~lq~~L~~r 161 (359)
++.|+.++..+...-..|+.. ...+|+-+...+. |.+.++|..+...+...
T Consensus 413 KetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeeeverLQ~lkgelEka 475 (527)
T PF15066_consen 413 KETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVERLQQLKGELEKA 475 (527)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
No 106
>PRK10884 SH3 domain-containing protein; Provisional
Probab=56.98 E-value=1.7e+02 Score=27.36 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=10.9
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHH
Q 018202 40 RLWSLSSALSQADDKKQTLQQKLQ 63 (359)
Q Consensus 40 rL~~L~~~iq~a~~~~~~L~~qI~ 63 (359)
+|-.|..-++++..+.+++.++.+
T Consensus 94 rlp~le~el~~l~~~l~~~~~~~~ 117 (206)
T PRK10884 94 RVPDLENQVKTLTDKLNNIDNTWN 117 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHH
Confidence 333444444444444444444433
No 107
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=56.96 E-value=4.1e+02 Score=31.77 Aligned_cols=12 Identities=0% Similarity=-0.225 Sum_probs=5.4
Q ss_pred HHHHHHHhhhcc
Q 018202 163 QFMISQVSFLYP 174 (359)
Q Consensus 163 ~~lv~qL~~IyP 174 (359)
.....+++.-|.
T Consensus 983 ~~~~~e~~~~~~ 994 (1353)
T TIGR02680 983 IGQLREFALTGL 994 (1353)
T ss_pred HHHHHHHhhcCc
Confidence 334455554443
No 108
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=56.77 E-value=97 Score=24.49 Aligned_cols=41 Identities=24% Similarity=0.361 Sum_probs=29.7
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 018202 39 ARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNEL 79 (359)
Q Consensus 39 ~rL~~L~~~iq~a~~~~~~L~~qI~~~le~~~~~~~~~~~l 79 (359)
+-|.++...+++...+.+.++.+++.+..+-.+.+...|++
T Consensus 19 ~~l~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l 59 (90)
T PF06103_consen 19 KVLKKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNEL 59 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888888888888887665444444444
No 109
>PRK04863 mukB cell division protein MukB; Provisional
Probab=56.76 E-value=4.4e+02 Score=32.02 Aligned_cols=29 Identities=21% Similarity=0.347 Sum_probs=18.5
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018202 40 RLWSLSSALSQADDKKQTLQQKLQSLIQV 68 (359)
Q Consensus 40 rL~~L~~~iq~a~~~~~~L~~qI~~~le~ 68 (359)
+|..+++-+.+.......|+.+++.+.+-
T Consensus 308 nL~rI~diL~ELe~rL~kLEkQaEkA~ky 336 (1486)
T PRK04863 308 RLVEMARELAELNEAESDLEQDYQAASDH 336 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666667777777776666553
No 110
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=56.52 E-value=3.9e+02 Score=31.41 Aligned_cols=29 Identities=10% Similarity=0.247 Sum_probs=14.0
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018202 42 WSLSSALSQADDKKQTLQQKLQSLIQVKA 70 (359)
Q Consensus 42 ~~L~~~iq~a~~~~~~L~~qI~~~le~~~ 70 (359)
-+....++.+...++.++.+++..++.++
T Consensus 652 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 680 (1201)
T PF12128_consen 652 KQAEQDLQRLKNEREQLKQEIEEAKEERK 680 (1201)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555443
No 111
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=56.35 E-value=3.3e+02 Score=30.43 Aligned_cols=37 Identities=24% Similarity=0.384 Sum_probs=30.2
Q ss_pred hhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018202 31 WEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKA 70 (359)
Q Consensus 31 ~~~~~~~l~rL~~L~~~iq~a~~~~~~L~~qI~~~le~~~ 70 (359)
-++|-| |++.|..-+|.+..+++.|..+++++=+.-.
T Consensus 404 ~~e~~Q---Rva~lEkKvqa~~kERDalr~e~kslk~ela 440 (961)
T KOG4673|consen 404 REEYHQ---RVATLEKKVQALTKERDALRREQKSLKKELA 440 (961)
T ss_pred HHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 356665 8999999999999999999999987655543
No 112
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=55.48 E-value=1e+02 Score=24.37 Aligned_cols=28 Identities=18% Similarity=0.259 Sum_probs=22.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018202 43 SLSSALSQADDKKQTLQQKLQSLIQVKA 70 (359)
Q Consensus 43 ~L~~~iq~a~~~~~~L~~qI~~~le~~~ 70 (359)
.++..|+++..+...|..+|+..-+.-+
T Consensus 18 ~~~~~l~el~~sQ~~L~~~i~~~~~~L~ 45 (92)
T PF14712_consen 18 RLDQQLQELRQSQEELLQQIDRLNEKLK 45 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888888888888888887776654
No 113
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=54.93 E-value=2.5e+02 Score=28.65 Aligned_cols=31 Identities=13% Similarity=0.339 Sum_probs=26.8
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018202 40 RLWSLSSALSQADDKKQTLQQKLQSLIQVKA 70 (359)
Q Consensus 40 rL~~L~~~iq~a~~~~~~L~~qI~~~le~~~ 70 (359)
.|.+|+.-|.........|..+|...++...
T Consensus 19 SL~~ld~~i~~l~~~i~~ld~eI~~~v~~q~ 49 (383)
T PF04100_consen 19 SLSNLDELIAKLRKEIRELDEEIKELVREQS 49 (383)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5678899999999999999999999888654
No 114
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=54.20 E-value=1.9e+02 Score=27.01 Aligned_cols=55 Identities=18% Similarity=0.296 Sum_probs=31.5
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 018202 38 LARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEK 95 (359)
Q Consensus 38 l~rL~~L~~~iq~a~~~~~~L~~qI~~~le~~~~~~~~~~~l~~~~~rl~~~~~~~~~ 95 (359)
++.+..|..+=+.+.....+|...|+.+-+.+. ...+++..++..+.....++..
T Consensus 7 ~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na---~L~~e~~~L~~q~~s~Qqal~~ 61 (193)
T PF14662_consen 7 LSCVEDLQLNNQKLADENAKLQRSVETAEEGNA---QLAEEITDLRKQLKSLQQALQK 61 (193)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555556666666666666666666543 3556666666666544444433
No 115
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=53.95 E-value=1.4e+02 Score=25.57 Aligned_cols=30 Identities=27% Similarity=0.306 Sum_probs=20.8
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018202 42 WSLSSALSQADDKKQTLQQKLQSLIQVKAE 71 (359)
Q Consensus 42 ~~L~~~iq~a~~~~~~L~~qI~~~le~~~~ 71 (359)
..|++.|.....+...+..++..+-..+..
T Consensus 19 e~L~s~lr~~E~E~~~l~~el~~l~~~r~~ 48 (120)
T PF12325_consen 19 ERLQSQLRRLEGELASLQEELARLEAERDE 48 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777777777766543
No 116
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=52.99 E-value=1.7e+02 Score=28.27 Aligned_cols=23 Identities=13% Similarity=0.254 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 018202 46 SALSQADDKKQTLQQKLQSLIQV 68 (359)
Q Consensus 46 ~~iq~a~~~~~~L~~qI~~~le~ 68 (359)
.-+|.+.-..+.|-+|++++.+.
T Consensus 164 ~eLqkr~~~v~~l~~q~~k~~~~ 186 (289)
T COG4985 164 RELQKRLLEVETLRDQVDKMVEQ 186 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666667777777766654
No 117
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=52.74 E-value=1.9e+02 Score=30.65 Aligned_cols=20 Identities=30% Similarity=0.400 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 018202 49 SQADDKKQTLQQKLQSLIQV 68 (359)
Q Consensus 49 q~a~~~~~~L~~qI~~~le~ 68 (359)
.|+.-..++|-.-|..+|.+
T Consensus 495 ada~SS~eTll~niq~llkv 514 (641)
T KOG3915|consen 495 ADALSSIETLLTNIQGLLKV 514 (641)
T ss_pred cccchhHHHHHHHHHHHHHH
Confidence 35566666777777776665
No 118
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=52.25 E-value=1.2e+02 Score=25.35 Aligned_cols=23 Identities=22% Similarity=0.130 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 018202 101 KVEKEDAKNQEERLSMEVRSLLV 123 (359)
Q Consensus 101 r~~~~~~~~rre~L~~~ir~l~~ 123 (359)
..+.+-+++|.+.|..++..+..
T Consensus 85 ~eA~~~l~~~~~~l~~~~~~l~~ 107 (126)
T TIGR00293 85 EEAIEFLKKRIEELEKAIEKLQE 107 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555443333
No 119
>KOG4182 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.13 E-value=3.2e+02 Score=29.35 Aligned_cols=32 Identities=22% Similarity=0.152 Sum_probs=26.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhhhccceee
Q 018202 147 GYGHLQKLQKMLRMRQQFMISQVSFLYPVKIL 178 (359)
Q Consensus 147 ~~~~L~~lq~~L~~rr~~lv~qL~~IyPI~~~ 178 (359)
+.+|++.++.+.+..|...+.|+..=|--.+-
T Consensus 216 rIgRfkqLelqY~~Vq~k~ikQlWedfd~kQ~ 247 (828)
T KOG4182|consen 216 RIGRFKQLELQYRAVQKKFIKQLWEDFDEKQG 247 (828)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 46788999999999999999999887755543
No 120
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=52.05 E-value=3.1e+02 Score=28.91 Aligned_cols=26 Identities=4% Similarity=0.115 Sum_probs=9.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHH
Q 018202 90 RLLMEKMSMRSKVEKEDAKNQEERLS 115 (359)
Q Consensus 90 ~~~~~~~~~~~r~~~~~~~~rre~L~ 115 (359)
++.+++-..+.....+.+.+++.+++
T Consensus 377 kk~~e~k~~q~q~k~~k~~kel~~~~ 402 (493)
T KOG0804|consen 377 KKIVERKLQQLQTKLKKCQKELKEER 402 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 121
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=51.84 E-value=1e+02 Score=30.55 Aligned_cols=44 Identities=16% Similarity=0.182 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhH
Q 018202 85 RLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTAL 128 (359)
Q Consensus 85 rl~~~~~~~~~~~~~~r~~~~~~~~rre~L~~~ir~l~~~~~~l 128 (359)
+.+..+.++.+|+.+.|+..+++.-..+.|..+.+.|......+
T Consensus 231 kr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~l 274 (294)
T KOG4571|consen 231 KRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASEL 274 (294)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677889999999999888877777777775555544444
No 122
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=51.78 E-value=4.5e+02 Score=30.73 Aligned_cols=16 Identities=25% Similarity=0.381 Sum_probs=6.3
Q ss_pred HHhcHHHHHHHHHHHH
Q 018202 40 RLWSLSSALSQADDKK 55 (359)
Q Consensus 40 rL~~L~~~iq~a~~~~ 55 (359)
++..++.-+.+...+.
T Consensus 738 ~~~~l~~~~~~~~~~~ 753 (1163)
T COG1196 738 RLEELEEELEELEEEL 753 (1163)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444433333
No 123
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=51.76 E-value=2.3e+02 Score=27.31 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=19.2
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018202 40 RLWSLSSALSQADDKKQTLQQKLQSLIQVK 69 (359)
Q Consensus 40 rL~~L~~~iq~a~~~~~~L~~qI~~~le~~ 69 (359)
||++--+-+..+...+..|+.+|+.+-...
T Consensus 12 Rla~YIekVr~LE~~N~~Le~~i~~~~~~~ 41 (312)
T PF00038_consen 12 RLASYIEKVRFLEQENKRLESEIEELREKK 41 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHhcc
Confidence 566666667778888888888888877763
No 124
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=51.38 E-value=3.9e+02 Score=29.87 Aligned_cols=16 Identities=38% Similarity=0.327 Sum_probs=7.9
Q ss_pred HHHHHHhHHhHHHhhc
Q 018202 129 SVARKRLQESNRLLAG 144 (359)
Q Consensus 129 ~~a~~~Lqe~~~~L~~ 144 (359)
..+..+|.+.+..|..
T Consensus 147 ~~~a~~l~~m~~sL~~ 162 (766)
T PF10191_consen 147 AKIADRLAEMQRSLAV 162 (766)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555555543
No 125
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=51.32 E-value=3e+02 Score=29.99 Aligned_cols=117 Identities=21% Similarity=0.174 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHH
Q 018202 54 KKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARK 133 (359)
Q Consensus 54 ~~~~L~~qI~~~le~~~~~~~~~~~l~~~~~rl~~~~~~~~~~~~~~r~~~~~~~~rre~L~~~ir~l~~~~~~l~~a~~ 133 (359)
.....+.....--+...+..++++++..--+.++...+.+..-..+.....++.+...++|.....-...+..-+.++..
T Consensus 315 ~~~~~~~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ 394 (594)
T PF05667_consen 315 EKETEEDEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEE 394 (594)
T ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHH
Q ss_pred HhHHhHHHhhcccccchHHHHHHHHHHHHHHHHHHHhhh
Q 018202 134 RLQESNRLLAGEKGYGHLQKLQKMLRMRQQFMISQVSFL 172 (359)
Q Consensus 134 ~Lqe~~~~L~~e~~~~~L~~lq~~L~~rr~~lv~qL~~I 172 (359)
.+...+.. .+.+..++..++.+....|.-|+.++..+
T Consensus 395 ni~kL~~~--v~~s~~rl~~L~~qWe~~R~pL~~e~r~l 431 (594)
T PF05667_consen 395 NIAKLQAL--VEASEQRLVELAQQWEKHRAPLIEEYRRL 431 (594)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
No 126
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=51.08 E-value=5.9e+02 Score=31.83 Aligned_cols=25 Identities=20% Similarity=0.417 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018202 44 LSSALSQADDKKQTLQQKLQSLIQV 68 (359)
Q Consensus 44 L~~~iq~a~~~~~~L~~qI~~~le~ 68 (359)
++..+......+.-++..+.++.++
T Consensus 976 ~~e~~~kL~kekk~lEe~~~~l~~~ 1000 (1930)
T KOG0161|consen 976 LDENISKLSKEKKELEERIRELQDD 1000 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344444433333
No 127
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=50.52 E-value=1.6e+02 Score=25.17 Aligned_cols=30 Identities=30% Similarity=0.365 Sum_probs=18.4
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018202 40 RLWSLSSALSQADDKKQTLQQKLQSLIQVK 69 (359)
Q Consensus 40 rL~~L~~~iq~a~~~~~~L~~qI~~~le~~ 69 (359)
.+.+|..-++.+....+....++..+.+.-
T Consensus 4 e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl 33 (132)
T PF07926_consen 4 ELSSLQSELQRLKEQEEDAEEQLQSLREDL 33 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666665543
No 128
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=50.32 E-value=2e+02 Score=26.31 Aligned_cols=28 Identities=18% Similarity=0.355 Sum_probs=15.3
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 018202 40 RLWSLSSALSQADDKKQTLQQKLQSLIQ 67 (359)
Q Consensus 40 rL~~L~~~iq~a~~~~~~L~~qI~~~le 67 (359)
++..|...+++...+...|+.+|+..-.
T Consensus 70 ~~~~l~~~~~~~~~~i~~l~~~i~~~~~ 97 (188)
T PF03962_consen 70 KLEKLQKEIEELEKKIEELEEKIEEAKK 97 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555555555555555555555533
No 129
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=50.21 E-value=5e+02 Score=30.79 Aligned_cols=16 Identities=31% Similarity=0.245 Sum_probs=6.2
Q ss_pred HHHHHHHhHHhHHHhh
Q 018202 128 LSVARKRLQESNRLLA 143 (359)
Q Consensus 128 l~~a~~~Lqe~~~~L~ 143 (359)
+.+.-..|++++..|+
T Consensus 586 ~~d~l~~le~~k~~ls 601 (1317)
T KOG0612|consen 586 LEDKLSLLEESKSKLS 601 (1317)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333334444433333
No 130
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=50.04 E-value=3.5e+02 Score=28.86 Aligned_cols=39 Identities=18% Similarity=0.191 Sum_probs=26.4
Q ss_pred ccCCCCccccchhhhHHHHHHHhcHHHHHHHHHHHHHHH
Q 018202 20 AIDPENVKVIEWEDYDQELARLWSLSSALSQADDKKQTL 58 (359)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~l~rL~~L~~~iq~a~~~~~~L 58 (359)
-++.-+|+.-+|++++.+..+|.|-..-.+.+......|
T Consensus 200 ELe~~~l~~~E~e~L~~e~~~L~n~e~i~~~~~~~~~~L 238 (563)
T TIGR00634 200 ELEEADLQPGEDEALEAEQQRLSNLEKLRELSQNALAAL 238 (563)
T ss_pred HHHhCCcCCCcHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 345556777778888888888888766655555544444
No 131
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=50.01 E-value=2.4e+02 Score=29.70 Aligned_cols=20 Identities=10% Similarity=0.262 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 018202 44 LSSALSQADDKKQTLQQKLQ 63 (359)
Q Consensus 44 L~~~iq~a~~~~~~L~~qI~ 63 (359)
|.+.|+++..+.+.++.+++
T Consensus 76 l~~~l~~l~~~~~~~~~~~~ 95 (525)
T TIGR02231 76 LRKQIRELEAELRDLEDRGD 95 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444433
No 132
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=49.58 E-value=3.9e+02 Score=29.30 Aligned_cols=62 Identities=24% Similarity=0.283 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHhHHhHHH
Q 018202 80 EEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRL 141 (359)
Q Consensus 80 ~~~~~rl~~~~~~~~~~~~~~r~~~~~~~~rre~L~~~ir~l~~~~~~l~~a~~~Lqe~~~~ 141 (359)
..+-++++.....++....+.++-.+.++.+.++++.+.+.-....+.+....+++......
T Consensus 428 ~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~ 489 (652)
T COG2433 428 EETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKE 489 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 33333444444444444444555555555555555555543333333343333334333333
No 133
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=49.54 E-value=2.4e+02 Score=26.81 Aligned_cols=119 Identities=18% Similarity=0.197 Sum_probs=54.3
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH-----HhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 018202 41 LWSLSSALSQADDKKQTLQQKLQSLIQVKAE-------SL-----KRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAK 108 (359)
Q Consensus 41 L~~L~~~iq~a~~~~~~L~~qI~~~le~~~~-------~~-----~~~~~l~~~~~rl~~~~~~~~~~~~~~r~~~~~~~ 108 (359)
|..+..++.++......++.+++........ ++ ...++..+....++......+..........+.++
T Consensus 40 l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~ 119 (225)
T COG1842 40 LAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLK 119 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666655554321 11 12223333333444444444444455555555555
Q ss_pred HHHHHHHHHHHHHHHhc------hhHHHHHHHhHHhHHHhhcccccchHHHHHHHHH
Q 018202 109 NQEERLSMEVRSLLVAG------TALSVARKRLQESNRLLAGEKGYGHLQKLQKMLR 159 (359)
Q Consensus 109 ~rre~L~~~ir~l~~~~------~~l~~a~~~Lqe~~~~L~~e~~~~~L~~lq~~L~ 159 (359)
+.-.+|..+|..+...- .....++.++.......+.......+..+...+.
T Consensus 120 ~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~~sa~~~fer~e~kie 176 (225)
T COG1842 120 KQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSSSSAMAAFERMEEKIE 176 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHH
Confidence 55556665554333222 2233344455544333333223333444444443
No 134
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=49.36 E-value=4.2e+02 Score=29.69 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 018202 44 LSSALSQADDKKQTLQQKLQS 64 (359)
Q Consensus 44 L~~~iq~a~~~~~~L~~qI~~ 64 (359)
=+..+-...++++.|..+++-
T Consensus 103 kda~lrq~eekn~slqerLel 123 (916)
T KOG0249|consen 103 KDADLRQNEEKNRSLQERLEL 123 (916)
T ss_pred cchhhchhHHhhhhhhHHHHH
Confidence 333444444444444444433
No 135
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=49.29 E-value=3.9e+02 Score=29.24 Aligned_cols=62 Identities=15% Similarity=0.151 Sum_probs=43.0
Q ss_pred HHhhhhccCCCccccccCCCCccccchhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018202 5 QRQRQHLQHPTSTSKAIDPENVKVIEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKA 70 (359)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~rL~~L~~~iq~a~~~~~~L~~qI~~~le~~~ 70 (359)
+|.-.|+.++.+.-.+..+-. .-+++++.-+-|+..|+-|+.+....++++......++...
T Consensus 255 E~e~e~L~~ql~~~N~~~~~~----~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~ 316 (629)
T KOG0963|consen 255 EREVEQLREQLAKANSSKKLA----KIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHK 316 (629)
T ss_pred HHHHHHHHHHHHhhhhhhhhc----cCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555544433322211 46788888889999999999999999999988777777643
No 136
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=49.24 E-value=1.3e+02 Score=24.29 Aligned_cols=33 Identities=24% Similarity=0.415 Sum_probs=26.1
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018202 39 ARLWSLSSALSQADDKKQTLQQKLQSLIQVKAE 71 (359)
Q Consensus 39 ~rL~~L~~~iq~a~~~~~~L~~qI~~~le~~~~ 71 (359)
..|-.|..||-....+.+.|..++..+|+.+++
T Consensus 33 s~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq 65 (83)
T PF03670_consen 33 SMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQ 65 (83)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 355667788888888888999999999887653
No 137
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=48.73 E-value=2.8e+02 Score=29.19 Aligned_cols=19 Identities=21% Similarity=0.375 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 018202 44 LSSALSQADDKKQTLQQKL 62 (359)
Q Consensus 44 L~~~iq~a~~~~~~L~~qI 62 (359)
|...+.++..+++.+++++
T Consensus 83 l~~~~~~~~~~~~~~~~~~ 101 (525)
T TIGR02231 83 LEAELRDLEDRGDALKALA 101 (525)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444
No 138
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=48.49 E-value=2.9e+02 Score=27.51 Aligned_cols=64 Identities=19% Similarity=0.246 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 018202 46 SALSQADDKKQTLQQKLQSLIQVKAE--SLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKN 109 (359)
Q Consensus 46 ~~iq~a~~~~~~L~~qI~~~le~~~~--~~~~~~~l~~~~~rl~~~~~~~~~~~~~~r~~~~~~~~ 109 (359)
.--++|..+--.....|+.+.+.-++ ..+....+..+++.+...+..++++..+++.+...++.
T Consensus 41 Q~~EQAr~~A~~fA~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~ 106 (301)
T PF06120_consen 41 QNAEQARQEAIEFADSLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKN 106 (301)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577777777788888888876553 33456666666666766667776666666555555543
No 139
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.27 E-value=3.1e+02 Score=30.64 Aligned_cols=31 Identities=10% Similarity=0.292 Sum_probs=25.8
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018202 40 RLWSLSSALSQADDKKQTLQQKLQSLIQVKA 70 (359)
Q Consensus 40 rL~~L~~~iq~a~~~~~~L~~qI~~~le~~~ 70 (359)
.|.++|+-|+....+...+-++|...+....
T Consensus 34 SL~~id~li~ki~~eir~~d~~l~~~Vr~q~ 64 (793)
T KOG2180|consen 34 SLTNIDSLIQKIQGEIRRVDKNLLAVVRTQE 64 (793)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 7788999999888888888888888887643
No 140
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=47.53 E-value=1.8e+02 Score=24.86 Aligned_cols=27 Identities=19% Similarity=0.044 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhch
Q 018202 100 SKVEKEDAKNQEERLSMEVRSLLVAGT 126 (359)
Q Consensus 100 ~r~~~~~~~~rre~L~~~ir~l~~~~~ 126 (359)
...+.+-++++.+.|..++..+.....
T Consensus 92 ~~eA~~~l~~~~~~l~~~~~~l~~~l~ 118 (140)
T PRK03947 92 LDEAIEILDKRKEELEKALEKLEEALQ 118 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666655444433
No 141
>PHA02562 46 endonuclease subunit; Provisional
Probab=47.37 E-value=3.5e+02 Score=28.20 Aligned_cols=11 Identities=27% Similarity=0.181 Sum_probs=5.4
Q ss_pred HHHHHhHHHHH
Q 018202 234 VQRSATALGYI 244 (359)
Q Consensus 234 ~~~isaALGyv 244 (359)
.+.++.|+..+
T Consensus 474 ~~r~~la~~l~ 484 (562)
T PHA02562 474 KARIDLALLFT 484 (562)
T ss_pred HHHHHHHHHHH
Confidence 34555555444
No 142
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=47.24 E-value=3.2e+02 Score=27.73 Aligned_cols=10 Identities=20% Similarity=0.361 Sum_probs=4.5
Q ss_pred hhhhHHHHHH
Q 018202 31 WEDYDQELAR 40 (359)
Q Consensus 31 ~~~~~~~l~r 40 (359)
+.+.+.++.|
T Consensus 193 ~~eWklEvER 202 (359)
T PF10498_consen 193 PAEWKLEVER 202 (359)
T ss_pred HHHHHHHHHH
Confidence 4444444444
No 143
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=47.23 E-value=3.3e+02 Score=32.01 Aligned_cols=130 Identities=12% Similarity=0.117 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 018202 31 WEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQ 110 (359)
Q Consensus 31 ~~~~~~~l~rL~~L~~~iq~a~~~~~~L~~qI~~~le~~~~~~~~~~~l~~~~~rl~~~~~~~~~~~~~~r~~~~~~~~r 110 (359)
+++.+..-.+...+...|+++-...+.++++|+..-+........... .+.++++......+.+ .++...+...+
T Consensus 57 l~~~~~~~~~~~~~~~~i~~ap~~~~~~~~~l~~~~~~~~~~~~~~s~-~~Leq~l~~~~~~L~~----~q~~l~~~~~~ 131 (1109)
T PRK10929 57 LEERKGSLERAKQYQQVIDNFPKLSAELRQQLNNERDEPRSVPPNMST-DALEQEILQVSSQLLE----KSRQAQQEQDR 131 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcccccccccCCH-HHHHHHHHHHHHHHHH----HHHHHHHHhhh
Q ss_pred HHHHHHHHHHHHHhchhHHHHHHHhHHhHHHhhc-ccccchHHHHHHHHHHHHHHHHHH
Q 018202 111 EERLSMEVRSLLVAGTALSVARKRLQESNRLLAG-EKGYGHLQKLQKMLRMRQQFMISQ 168 (359)
Q Consensus 111 re~L~~~ir~l~~~~~~l~~a~~~Lqe~~~~L~~-e~~~~~L~~lq~~L~~rr~~lv~q 168 (359)
-.++..+++.+- ....++++++++.+..|.. -.....+...++..-..++.+...
T Consensus 132 ~~~~~~~l~~~p---q~~~~~~~~l~~i~~~L~~~~~~~~~l~~a~~~~lqae~~~l~~ 187 (1109)
T PRK10929 132 AREISDSLSQLP---QQQTEARRQLNEIERRLQTLGTPNTPLAQAQLTALQAESAALKA 187 (1109)
T ss_pred hHHHHHHHhhch---hhHHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHH
No 144
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=47.15 E-value=1.9e+02 Score=25.07 Aligned_cols=69 Identities=9% Similarity=0.166 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 018202 47 ALSQADDKKQTLQQKLQSLIQVKAESLK-RSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLS 115 (359)
Q Consensus 47 ~iq~a~~~~~~L~~qI~~~le~~~~~~~-~~~~l~~~~~rl~~~~~~~~~~~~~~r~~~~~~~~rre~L~ 115 (359)
-.++....++.++..++.++........ .++.-..+...+..-+..+..++.....++..+..++++|+
T Consensus 41 ~~~~f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~i~~sq~~i~~lK~~L~~ak~~L~~~~~eL~ 110 (142)
T PF04048_consen 41 RYQEFEELKKRIEKALQEVVNEHYQGFNSSIGSYSQILSSISESQERIRELKESLQEAKSLLGCRREELK 110 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 4566666777777777777776654322 33333333333333333333333344444444444444444
No 145
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=46.75 E-value=1.9e+02 Score=24.84 Aligned_cols=52 Identities=21% Similarity=0.300 Sum_probs=27.9
Q ss_pred ccccCCCCccccchhhhHHHHHHH----hcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018202 18 SKAIDPENVKVIEWEDYDQELARL----WSLSSALSQADDKKQTLQQKLQSLIQVK 69 (359)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~l~rL----~~L~~~iq~a~~~~~~L~~qI~~~le~~ 69 (359)
+.+.....|.+--.+.+...|.++ .+|..-+..+..+++.+..+|-.+...+
T Consensus 5 ~~s~~~~~~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~ 60 (120)
T PF12325_consen 5 SVSTSSGGPSVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEEN 60 (120)
T ss_pred hhccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555666555542 3445555555666666666665555544
No 146
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=46.67 E-value=2.5e+02 Score=26.35 Aligned_cols=18 Identities=28% Similarity=0.457 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018202 105 EDAKNQEERLSMEVRSLL 122 (359)
Q Consensus 105 ~~~~~rre~L~~~ir~l~ 122 (359)
+....+.+.+..+|+.|.
T Consensus 165 ~~~~~re~~~e~~i~~L~ 182 (237)
T PF00261_consen 165 EKASEREDEYEEKIRDLE 182 (237)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHH
Confidence 344445555555554444
No 147
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=46.52 E-value=2.2e+02 Score=25.48 Aligned_cols=9 Identities=33% Similarity=0.457 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 018202 52 DDKKQTLQQ 60 (359)
Q Consensus 52 ~~~~~~L~~ 60 (359)
......+..
T Consensus 87 ~~~l~~l~~ 95 (191)
T PF04156_consen 87 QQQLQQLQE 95 (191)
T ss_pred HHHHHHHHH
Confidence 333333333
No 148
>PRK11281 hypothetical protein; Provisional
Probab=46.30 E-value=5e+02 Score=30.51 Aligned_cols=11 Identities=45% Similarity=0.522 Sum_probs=5.1
Q ss_pred hhhhHHHHHHH
Q 018202 31 WEDYDQELARL 41 (359)
Q Consensus 31 ~~~~~~~l~rL 41 (359)
-++++++|.-|
T Consensus 62 ~~~l~~tL~~L 72 (1113)
T PRK11281 62 QQDLEQTLALL 72 (1113)
T ss_pred HHHHHHHHHHH
Confidence 34555544333
No 149
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=46.18 E-value=4.4e+02 Score=28.96 Aligned_cols=23 Identities=30% Similarity=0.281 Sum_probs=11.2
Q ss_pred HHHhHHHHHHHHHHHHHHhcCCCC
Q 018202 236 RSATALGYIAHVVSLIASYLEVPL 259 (359)
Q Consensus 236 ~isaALGyvAhlv~lls~yL~vpL 259 (359)
++++|+-|-+. +..|+.-|++|+
T Consensus 494 rl~~~~~~~~~-l~~l~~~L~fp~ 516 (632)
T PF14817_consen 494 RLHAASPYGAS-LISLLESLGFPL 516 (632)
T ss_pred HhcccCCCCch-HHHHHHhcCCCC
Confidence 34444444332 234556666666
No 150
>PF11887 DUF3407: Protein of unknown function (DUF3407); InterPro: IPR024516 This entry represents a domain of unknown function found at the C terminus of many proteins in the mammalian cell entry family.
Probab=45.38 E-value=2.9e+02 Score=26.63 Aligned_cols=23 Identities=13% Similarity=0.065 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 018202 100 SKVEKEDAKNQEERLSMEVRSLL 122 (359)
Q Consensus 100 ~r~~~~~~~~rre~L~~~ir~l~ 122 (359)
.....+.+..++++|..-+....
T Consensus 82 ~~~~s~tL~~~~~~L~~lL~~~~ 104 (267)
T PF11887_consen 82 LTTTSRTLVDQRQQLDALLLSAT 104 (267)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Confidence 44444555556666655554333
No 151
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=45.36 E-value=3.5e+02 Score=29.16 Aligned_cols=17 Identities=35% Similarity=0.313 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHhcC
Q 018202 315 AVFLLNKDIEQLLNYIG 331 (359)
Q Consensus 315 aV~LLNknI~qL~~~~G 331 (359)
+-+-+.+.|.+.+....
T Consensus 471 ~~~~~~~~i~~~l~~i~ 487 (555)
T TIGR03545 471 GSFEATKYILQVLKKID 487 (555)
T ss_pred CccHHHHHHHHHHhhCC
Confidence 34567777777776543
No 152
>PF08287 DASH_Spc19: Spc19; InterPro: IPR013251 Spc19 is a component of the DASH complex. The DASH complex associates with the spindle pole body and is important for spindle and kinetochore integrity during cell division [, ].
Probab=45.25 E-value=2.2e+02 Score=25.35 Aligned_cols=79 Identities=16% Similarity=0.233 Sum_probs=42.5
Q ss_pred HHhcHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhh--HHHHHHHHHH-HHHHHHHHHHHHhhHHHHHHHHHH
Q 018202 40 RLWSLSSALSQADDKKQTLQQ------KLQSLIQVKAESLKRS--NELEEMRERL-EARRLLMEKMSMRSKVEKEDAKNQ 110 (359)
Q Consensus 40 rL~~L~~~iq~a~~~~~~L~~------qI~~~le~~~~~~~~~--~~l~~~~~rl-~~~~~~~~~~~~~~r~~~~~~~~r 110 (359)
+..+|.+|++-+..+.++|.. .+..+|+.++.+ +.+ -.+..++..+ +++.=.++.+..+.....+.+++|
T Consensus 5 cV~SL~~S~~lL~~Si~~L~~~~~D~pRL~kvL~t~R~F-eLvpe~dl~~Aq~~l~~EI~P~I~~Ll~k~e~~l~kL~Rr 83 (153)
T PF08287_consen 5 CVSSLRSSVQLLQSSIETLDSGTSDFPRLTKVLQTTRHF-ELVPEPDLQAAQQSLRDEIEPQINHLLDKAEKHLEKLQRR 83 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHcccCcc-cccCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666654 334556655533 222 2333333333 334444444555566666777777
Q ss_pred HHHHHHHHH
Q 018202 111 EERLSMEVR 119 (359)
Q Consensus 111 re~L~~~ir 119 (359)
.+.|+++..
T Consensus 84 ~~tL~ak~E 92 (153)
T PF08287_consen 84 EETLKAKCE 92 (153)
T ss_pred HHHHHHHHH
Confidence 777777763
No 153
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=45.15 E-value=4.3e+02 Score=28.54 Aligned_cols=6 Identities=33% Similarity=0.744 Sum_probs=2.7
Q ss_pred HHHHHH
Q 018202 242 GYIAHV 247 (359)
Q Consensus 242 GyvAhl 247 (359)
-||..|
T Consensus 445 ~yi~~L 450 (546)
T PF07888_consen 445 EYIERL 450 (546)
T ss_pred HHHHHH
Confidence 344444
No 154
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.61 E-value=5.2e+02 Score=29.37 Aligned_cols=12 Identities=25% Similarity=0.185 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 018202 44 LSSALSQADDKK 55 (359)
Q Consensus 44 L~~~iq~a~~~~ 55 (359)
|+.-|+|.....
T Consensus 456 ls~kl~Dvr~~~ 467 (1118)
T KOG1029|consen 456 LSGKLQDVRVDI 467 (1118)
T ss_pred Hhhhhhhheecc
Confidence 444444443333
No 155
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=44.28 E-value=3.2e+02 Score=26.82 Aligned_cols=35 Identities=20% Similarity=0.436 Sum_probs=22.5
Q ss_pred hhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH
Q 018202 31 WEDYDQELARLWSLSSALSQADDKKQTLQQKLQSL 65 (359)
Q Consensus 31 ~~~~~~~l~rL~~L~~~iq~a~~~~~~L~~qI~~~ 65 (359)
+++++..|-.+-+...+|+.....+++|..+|..+
T Consensus 123 ~d~yR~~LK~IR~~E~sl~p~R~~r~~l~d~I~kL 157 (271)
T PF13805_consen 123 LDQYRIHLKSIRNREESLQPSRDRRRKLQDEIAKL 157 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHH
Confidence 55666666666666666666666666666666653
No 156
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=44.22 E-value=3.9e+02 Score=27.80 Aligned_cols=12 Identities=25% Similarity=0.451 Sum_probs=6.5
Q ss_pred cccchhhhHHHH
Q 018202 27 KVIEWEDYDQEL 38 (359)
Q Consensus 27 ~~~~~~~~~~~l 38 (359)
.|++.+|++-.|
T Consensus 72 gVfqlddi~~ql 83 (499)
T COG4372 72 GVFQLDDIRPQL 83 (499)
T ss_pred hhhhHHHHHHHH
Confidence 355566666444
No 157
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=44.13 E-value=5.5e+02 Score=29.45 Aligned_cols=51 Identities=14% Similarity=0.226 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHH
Q 018202 45 SSALSQADDKKQTLQQKLQSLIQVKAESL-KRSNELEEMRERLEARRLLMEK 95 (359)
Q Consensus 45 ~~~iq~a~~~~~~L~~qI~~~le~~~~~~-~~~~~l~~~~~rl~~~~~~~~~ 95 (359)
+-.|..+..+.+.+..+++.+.+..+... +..+++.+++-.+++.+...++
T Consensus 332 ~~~~~~~~~e~~~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe 383 (980)
T KOG0980|consen 332 ELQIEQLSREVAQLKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQE 383 (980)
T ss_pred hHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 35566666666777777666655433322 2344444444444443333333
No 158
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=43.73 E-value=2.8e+02 Score=25.91 Aligned_cols=17 Identities=12% Similarity=0.307 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018202 46 SALSQADDKKQTLQQKL 62 (359)
Q Consensus 46 ~~iq~a~~~~~~L~~qI 62 (359)
.-+.+..+.+..|+.+.
T Consensus 98 ~~LA~~eirR~~LeAQk 114 (192)
T PF11180_consen 98 ARLADVEIRRAQLEAQK 114 (192)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33566666677776653
No 159
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=43.32 E-value=2.2e+02 Score=24.69 Aligned_cols=15 Identities=13% Similarity=0.282 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 018202 104 KEDAKNQEERLSMEV 118 (359)
Q Consensus 104 ~~~~~~rre~L~~~i 118 (359)
.+++++.-.+++..+
T Consensus 84 ~~~i~~eV~~v~~dv 98 (126)
T PF07889_consen 84 SKQIKDEVTEVREDV 98 (126)
T ss_pred HHHHHHHHHHHHhhH
Confidence 333333333333333
No 160
>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=43.16 E-value=5.5e+02 Score=29.20 Aligned_cols=25 Identities=4% Similarity=0.074 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHH-HHhhhcccee
Q 018202 153 KLQKMLRMRQQFMIS-QVSFLYPVKI 177 (359)
Q Consensus 153 ~lq~~L~~rr~~lv~-qL~~IyPI~~ 177 (359)
+.-.++-..|+.|.. .+...++|.+
T Consensus 171 ~~ld~I~~~RReLf~~~l~~~~~is~ 196 (835)
T COG3264 171 DILDQILDTRRELLNSLLSQREAISL 196 (835)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccCH
Confidence 333444444444444 3455555554
No 161
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=43.12 E-value=2.2e+02 Score=24.67 Aligned_cols=7 Identities=29% Similarity=0.249 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 018202 48 LSQADDK 54 (359)
Q Consensus 48 iq~a~~~ 54 (359)
+.+|...
T Consensus 41 m~~A~~~ 47 (126)
T PF07889_consen 41 MSDAVAS 47 (126)
T ss_pred HHHHHHH
Confidence 3344333
No 162
>KOG3032 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.05 E-value=1.4e+02 Score=28.70 Aligned_cols=16 Identities=31% Similarity=0.268 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 018202 105 EDAKNQEERLSMEVRS 120 (359)
Q Consensus 105 ~~~~~rre~L~~~ir~ 120 (359)
+.++.|+++|..+.|+
T Consensus 214 ekl~~qK~ellnkkRe 229 (264)
T KOG3032|consen 214 EKLKRQKMELLNKKRE 229 (264)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4555566666666544
No 163
>PRK04863 mukB cell division protein MukB; Provisional
Probab=42.94 E-value=7e+02 Score=30.36 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=15.9
Q ss_pred HHHhHHHHHH---------HHHHHHHHhcCCC
Q 018202 236 RSATALGYIA---------HVVSLIASYLEVP 258 (359)
Q Consensus 236 ~isaALGyvA---------hlv~lls~yL~vp 258 (359)
.++|+||-.. ++...|.+.-++|
T Consensus 701 ~~~A~lg~~~~~iVv~d~~~A~~ai~~L~~~p 732 (1486)
T PRK04863 701 YFSALYGPARHAIVVPDLSDAAEQLAGLEDCP 732 (1486)
T ss_pred HHHHHHHhhhCeEEeCCHHHHHHHHHhccCCc
Confidence 4777777653 4567778888765
No 164
>PRK00106 hypothetical protein; Provisional
Probab=42.33 E-value=4.7e+02 Score=28.16 Aligned_cols=16 Identities=25% Similarity=0.138 Sum_probs=10.2
Q ss_pred cceEEeccccCCCccc
Q 018202 208 GSLTILGLHLTILPFT 223 (359)
Q Consensus 208 ~~~tI~Gl~LP~~~~~ 223 (359)
...|+.-++|||..++
T Consensus 222 ~e~tvs~v~lp~demk 237 (535)
T PRK00106 222 TEQTITTVHLPDDNMK 237 (535)
T ss_pred hhheeeeEEcCChHhh
Confidence 3566777777775443
No 165
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.21 E-value=3.9e+02 Score=27.21 Aligned_cols=41 Identities=24% Similarity=0.272 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 018202 54 KKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLME 94 (359)
Q Consensus 54 ~~~~L~~qI~~~le~~~~~~~~~~~l~~~~~rl~~~~~~~~ 94 (359)
+.+++.+.++++=....+...-.+++.+++++|+.+..-+.
T Consensus 226 eme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~ 266 (365)
T KOG2391|consen 226 EMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQ 266 (365)
T ss_pred HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 33444444444333333333355555555555554444443
No 166
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=41.85 E-value=3.8e+02 Score=27.03 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCCceeecC
Q 018202 241 LGYIAHVVSLIASYLEVPLRYPLRLGG 267 (359)
Q Consensus 241 LGyvAhlv~lls~yL~vpLpYpi~~~g 267 (359)
.+..--+|+++..|..-.--|.++-.|
T Consensus 216 f~~~~~~vq~lQ~~YQ~~~Ly~l~AlG 242 (330)
T PF07851_consen 216 FSLYQSVVQFLQYRYQRGCLYRLRALG 242 (330)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 333344556666665554445554444
No 167
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=41.59 E-value=3.7e+02 Score=26.77 Aligned_cols=29 Identities=28% Similarity=0.527 Sum_probs=22.8
Q ss_pred CCChhHHHHHHhHHHHHHHHHHHHHHhcCC
Q 018202 228 FTDKKEVQRSATALGYIAHVVSLIASYLEV 257 (359)
Q Consensus 228 f~~~~~~~~isaALGyvAhlv~lls~yL~v 257 (359)
|+.. .+...|.|.|..|.-|..+-.|..|
T Consensus 184 F~~e-~v~~~S~Aa~~Lc~WV~A~~~Y~~v 212 (344)
T PF12777_consen 184 FNPE-KVRKASKAAGSLCKWVRAMVKYYEV 212 (344)
T ss_dssp SSHH-HHHHH-TTHHHHHHHHHHHHHHHHH
T ss_pred CCHH-HHHHHhhcchHHHHHHHHHHHHHHH
Confidence 5443 4668899999999999999999876
No 168
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=41.18 E-value=4.4e+02 Score=27.52 Aligned_cols=29 Identities=21% Similarity=0.394 Sum_probs=19.9
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018202 40 RLWSLSSALSQADDKKQTLQQKLQSLIQV 68 (359)
Q Consensus 40 rL~~L~~~iq~a~~~~~~L~~qI~~~le~ 68 (359)
-|..+...|.+...+..+|+++|.++-..
T Consensus 46 ei~~~~~~i~~~~~~~~kL~~~lk~~e~~ 74 (420)
T COG4942 46 EIAALEKKIREQQDQRAKLEKQLKSLETE 74 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777777777777777766554
No 169
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=40.60 E-value=2.4e+02 Score=24.38 Aligned_cols=20 Identities=5% Similarity=0.102 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 018202 46 SALSQADDKKQTLQQKLQSL 65 (359)
Q Consensus 46 ~~iq~a~~~~~~L~~qI~~~ 65 (359)
+||.+....++.=...-+++
T Consensus 38 n~i~~Ll~~~~r~~~~~e~l 57 (151)
T PF11559_consen 38 NCIYDLLQQRDRDMEQREDL 57 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444443333333333
No 170
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=40.50 E-value=6.9e+02 Score=29.62 Aligned_cols=32 Identities=22% Similarity=0.281 Sum_probs=16.5
Q ss_pred CCcccCcccCCCch--hhHHHHH--HHHHHHHHHHH
Q 018202 296 KPAEFPLFLEGQDA--TRAAYAV--FLLNKDIEQLL 327 (359)
Q Consensus 296 ~~r~fPLy~~~~d~--~~F~yaV--~LLNknI~qL~ 327 (359)
.||-|-|.-.+.++ ..|-+++ .|..+|++|.-
T Consensus 693 vPRLfDLv~~~d~~~r~aFYfaLrdtLV~d~LeQAt 728 (1293)
T KOG0996|consen 693 VPRLFDLVKCKDEKFRPAFYFALRDTLVADNLEQAT 728 (1293)
T ss_pred cchHhhhhccCCHHHHHHHHHHHhhhhhhcCHHHHH
Confidence 45666665443332 2343333 56677777653
No 171
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=40.39 E-value=5.1e+02 Score=28.06 Aligned_cols=82 Identities=24% Similarity=0.226 Sum_probs=47.7
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 018202 37 ELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRS----NELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEE 112 (359)
Q Consensus 37 ~l~rL~~L~~~iq~a~~~~~~L~~qI~~~le~~~~~~~~~----~~l~~~~~rl~~~~~~~~~~~~~~r~~~~~~~~rre 112 (359)
.|..+++.|..+.++....+...-+++++...-+..++.. +++.+.++|+........||.... +++-...+
T Consensus 253 ~l~~~~~~d~~l~~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~ve~Rl~~L~~l~RKY~~~~----~~l~~~~~ 328 (557)
T COG0497 253 ALEDLSEYDGKLSELAELLEEALYELEEASEELRAYLDELEFDPNRLEEVEERLFALKSLARKYGVTI----EDLLEYLD 328 (557)
T ss_pred HHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCH----HHHHHHHH
Confidence 3444455555566666666666666666666555555422 457777777777777777766655 44444455
Q ss_pred HHHHHHHHHH
Q 018202 113 RLSMEVRSLL 122 (359)
Q Consensus 113 ~L~~~ir~l~ 122 (359)
++..++..+.
T Consensus 329 ~~~~el~~L~ 338 (557)
T COG0497 329 KIKEELAQLD 338 (557)
T ss_pred HHHHHHHHhh
Confidence 5555554443
No 172
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=40.24 E-value=2.7e+02 Score=24.79 Aligned_cols=8 Identities=0% Similarity=-0.026 Sum_probs=3.3
Q ss_pred ccchhhhH
Q 018202 28 VIEWEDYD 35 (359)
Q Consensus 28 ~~~~~~~~ 35 (359)
.++|..|-
T Consensus 16 ~~~~~~~~ 23 (174)
T PRK07352 16 GLNLNLLE 23 (174)
T ss_pred CCchhHHH
Confidence 34444443
No 173
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=40.21 E-value=3e+02 Score=25.26 Aligned_cols=15 Identities=27% Similarity=0.403 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q 018202 105 EDAKNQEERLSMEVR 119 (359)
Q Consensus 105 ~~~~~rre~L~~~ir 119 (359)
++++++.++|..++.
T Consensus 113 ~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 113 EELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444445554443
No 174
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=40.16 E-value=52 Score=29.93 Aligned_cols=15 Identities=20% Similarity=0.333 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHH
Q 018202 55 KQTLQQKLQSLIQVK 69 (359)
Q Consensus 55 ~~~L~~qI~~~le~~ 69 (359)
.+.+|+++|.+||.+
T Consensus 2 LeD~EsklN~AIERn 16 (166)
T PF04880_consen 2 LEDFESKLNQAIERN 16 (166)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 466788888888875
No 175
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=39.93 E-value=3.6e+02 Score=26.12 Aligned_cols=61 Identities=15% Similarity=0.256 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 018202 46 SALSQADDKKQTLQQKLQSLIQVKAE-SLKRSNELEEMRERLEARRLLMEKMSMRSKVEKED 106 (359)
Q Consensus 46 ~~iq~a~~~~~~L~~qI~~~le~~~~-~~~~~~~l~~~~~rl~~~~~~~~~~~~~~r~~~~~ 106 (359)
........-.+..+.+|...|..+.. ......++.+.++.+......+...+...+.+.+.
T Consensus 35 ~~~ekLs~~ldvVe~~L~~~I~~~s~~f~~a~~~v~el~~~l~~a~~~~~~~R~~L~~~~~~ 96 (291)
T PF10475_consen 35 ELQEKLSHYLDVVEKKLSREISEKSDSFFQAMSSVQELQDELEEALVICKNLRRNLKSADEN 96 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556666666666665553 33455566666666555555555555555555544
No 176
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=39.89 E-value=3.6e+02 Score=26.12 Aligned_cols=13 Identities=15% Similarity=0.158 Sum_probs=6.2
Q ss_pred ccchHHHHHHHHH
Q 018202 337 PRHVLANLKELLR 349 (359)
Q Consensus 337 ~r~tL~NLk~Ll~ 349 (359)
++.+|..|+.+|.
T Consensus 271 l~~l~~~l~~im~ 283 (291)
T PF10475_consen 271 LLELLEVLWDIMC 283 (291)
T ss_pred HHHHHHHHHHHHH
Confidence 3445555555543
No 177
>PRK09343 prefoldin subunit beta; Provisional
Probab=39.76 E-value=2.4e+02 Score=23.98 Aligned_cols=35 Identities=20% Similarity=0.329 Sum_probs=18.3
Q ss_pred hhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 018202 33 DYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQ 67 (359)
Q Consensus 33 ~~~~~l~rL~~L~~~iq~a~~~~~~L~~qI~~~le 67 (359)
.+++.++.+-.+..-|+.....+..|+.+++..--
T Consensus 8 ~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~ 42 (121)
T PRK09343 8 EVQAQLAQLQQLQQQLERLLQQKSQIDLELREINK 42 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555554433
No 178
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=39.64 E-value=80 Score=25.07 Aligned_cols=24 Identities=25% Similarity=0.572 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 018202 75 RSNELEEMRERLEARRLLMEKMSM 98 (359)
Q Consensus 75 ~~~~l~~~~~rl~~~~~~~~~~~~ 98 (359)
+.+++...+++++..+..+.+++.
T Consensus 57 q~~~i~~Le~~i~~k~~~L~~~~~ 80 (83)
T PF07544_consen 57 QEEEIEELEEQIRKKREVLQKFKE 80 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666655543
No 179
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=39.59 E-value=3.2e+02 Score=25.41 Aligned_cols=12 Identities=8% Similarity=0.501 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHH
Q 018202 60 QKLQSLIQVKAE 71 (359)
Q Consensus 60 ~qI~~~le~~~~ 71 (359)
..|..+|+.|+.
T Consensus 76 ~pI~~vLe~R~~ 87 (204)
T PRK09174 76 PRIGGIIETRRD 87 (204)
T ss_pred HHHHHHHHHHHH
Confidence 455566665543
No 180
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=39.50 E-value=2.6e+02 Score=30.10 Aligned_cols=38 Identities=18% Similarity=0.261 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 018202 84 ERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSL 121 (359)
Q Consensus 84 ~rl~~~~~~~~~~~~~~r~~~~~~~~rre~L~~~ir~l 121 (359)
+.++..+..++..+..++.+.++++.-+++++..++.+
T Consensus 219 ~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~l 256 (555)
T TIGR03545 219 EEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAEL 256 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33333334444444444444444444444444444333
No 181
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=38.85 E-value=6.1e+02 Score=28.52 Aligned_cols=75 Identities=20% Similarity=0.159 Sum_probs=46.5
Q ss_pred hHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 018202 34 YDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKN 109 (359)
Q Consensus 34 ~~~~l~rL~~L~~~iq~a~~~~~~L~~qI~~~le~~~~~~~~~~~l~~~~~rl~~~~~~~~~~~~~~r~~~~~~~~ 109 (359)
+.+-.-++.+|...+.-|..+..+-.+ .+.+.++..+.-+..+++..++++-..+.-++.++.....+.+.++.+
T Consensus 107 lrq~eekn~slqerLelaE~~l~qs~r-ae~lpeveael~qr~~al~~aee~~~~~eer~~kl~~~~qe~naeL~r 181 (916)
T KOG0249|consen 107 LRQNEEKNRSLQERLELAEPKLQQSLR-AETLPEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLEELNAELQR 181 (916)
T ss_pred hchhHHhhhhhhHHHHHhhHhhHhHHh-hhhhhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 444455777777777777777666555 666666666555566666666666555555555555555555555553
No 182
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=38.21 E-value=5.6e+02 Score=27.91 Aligned_cols=115 Identities=12% Similarity=0.126 Sum_probs=0.0
Q ss_pred hHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH---------------HHHHHHHHHHHHHHHHHHH
Q 018202 34 YDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNEL---------------EEMRERLEARRLLMEKMSM 98 (359)
Q Consensus 34 ~~~~l~rL~~L~~~iq~a~~~~~~L~~qI~~~le~~~~~~~~~~~l---------------~~~~~rl~~~~~~~~~~~~ 98 (359)
.++.|-+|.-+..-+.-..+..++|+.++++++++.....+..+.+ .+-+..++..-..+..+.+
T Consensus 597 k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp~l~~AErdFk~Elq~~~~~~~~L~~ 676 (741)
T KOG4460|consen 597 KKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSELPVLSDAERDFKKELQLIPDQLRHLGN 676 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHhHHHHHHHHH
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhchhHHHH-HHHhHHhHHHhhccccc
Q 018202 99 RSKVEKEDAKNQEERLSMEVRSLLVAGTALSVA-RKRLQESNRLLAGEKGY 148 (359)
Q Consensus 99 ~~r~~~~~~~~rre~L~~~ir~l~~~~~~l~~a-~~~Lqe~~~~L~~e~~~ 148 (359)
.+..++....|++.-......++....-.+.+. ++.+|+--..|.++...
T Consensus 677 ~iET~~~~~~KQ~~H~~~v~~al~K~~Y~l~~~Q~~~iqsiL~~L~~~i~~ 727 (741)
T KOG4460|consen 677 AIETVTMKKDKQQQHMEKVLSALPKPTYILSAYQRKCIQSILKELGEHIRE 727 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCcccccHHHHHHHHHHHHHHHHHHHH
No 183
>PRK11546 zraP zinc resistance protein; Provisional
Probab=37.84 E-value=2.5e+02 Score=24.99 Aligned_cols=29 Identities=0% Similarity=0.046 Sum_probs=20.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 018202 90 RLLMEKMSMRSKVEKEDAKNQEERLSMEV 118 (359)
Q Consensus 90 ~~~~~~~~~~~r~~~~~~~~rre~L~~~i 118 (359)
....+++..+...+++++..++.+|+.-.
T Consensus 53 q~I~~~f~~~t~~LRqqL~aKr~ELnALl 81 (143)
T PRK11546 53 QKIHNDFYAQTSALRQQLVSKRYEYNALL 81 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666677777777777777777665
No 184
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=37.33 E-value=4.1e+02 Score=26.08 Aligned_cols=13 Identities=15% Similarity=0.411 Sum_probs=7.5
Q ss_pred hHHHHHHHHHHHH
Q 018202 239 TALGYIAHVVSLI 251 (359)
Q Consensus 239 aALGyvAhlv~ll 251 (359)
.||-.+.-+|..+
T Consensus 248 salnivgDllRkv 260 (333)
T KOG1853|consen 248 SALNIVGDLLRKV 260 (333)
T ss_pred HHHHHHHHHHHHh
Confidence 4566666666544
No 185
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=37.33 E-value=2.4e+02 Score=23.32 Aligned_cols=28 Identities=21% Similarity=0.338 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhH
Q 018202 101 KVEKEDAKNQEERLSMEVRSLLVAGTAL 128 (359)
Q Consensus 101 r~~~~~~~~rre~L~~~ir~l~~~~~~l 128 (359)
..+...+++|.+.+...|..+......+
T Consensus 66 ~e~~~~l~~r~e~ie~~i~~lek~~~~l 93 (110)
T TIGR02338 66 EEAIQELKEKKETLELRVKTLQRQEERL 93 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666666665554444333
No 186
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=37.21 E-value=3.3e+02 Score=24.98 Aligned_cols=40 Identities=23% Similarity=0.399 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 018202 78 ELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSME 117 (359)
Q Consensus 78 ~l~~~~~rl~~~~~~~~~~~~~~r~~~~~~~~rre~L~~~ 117 (359)
++...+.++..+...++.-........+.+.++..+|..+
T Consensus 79 el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~ 118 (201)
T PF12072_consen 79 ELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQR 118 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444433333333334444444443333
No 187
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=37.20 E-value=6.4e+02 Score=28.24 Aligned_cols=22 Identities=23% Similarity=0.141 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018202 47 ALSQADDKKQTLQQKLQSLIQV 68 (359)
Q Consensus 47 ~iq~a~~~~~~L~~qI~~~le~ 68 (359)
.+.+...+.+-..++++..||.
T Consensus 35 ~ls~l~~kLql~~qe~~~~le~ 56 (766)
T PF10191_consen 35 HLSSLVMKLQLYSQEVNASLEE 56 (766)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555556666666654
No 188
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=36.62 E-value=3.1e+02 Score=24.42 Aligned_cols=13 Identities=8% Similarity=0.230 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 018202 56 QTLQQKLQSLIQV 68 (359)
Q Consensus 56 ~~L~~qI~~~le~ 68 (359)
+.+.+.++++-+.
T Consensus 50 ~~I~~~l~~Ae~~ 62 (173)
T PRK13460 50 SGVQNDINKASEL 62 (173)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444433
No 189
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=36.53 E-value=2.3e+02 Score=26.90 Aligned_cols=12 Identities=25% Similarity=0.293 Sum_probs=5.3
Q ss_pred hhhhHHHHHHHh
Q 018202 31 WEDYDQELARLW 42 (359)
Q Consensus 31 ~~~~~~~l~rL~ 42 (359)
-+.|+..|..|.
T Consensus 104 ~~~~~~~l~~l~ 115 (262)
T PF14257_consen 104 ADKFDSFLDELS 115 (262)
T ss_pred HHHHHHHHHHHh
Confidence 344554444443
No 190
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=35.57 E-value=7.3e+02 Score=28.48 Aligned_cols=10 Identities=10% Similarity=0.305 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 018202 109 NQEERLSMEV 118 (359)
Q Consensus 109 ~rre~L~~~i 118 (359)
+.+.+|..++
T Consensus 466 ~~~~~L~d~l 475 (980)
T KOG0980|consen 466 EENTNLNDQL 475 (980)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 191
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=35.53 E-value=2.4e+02 Score=22.95 Aligned_cols=23 Identities=13% Similarity=0.300 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 018202 101 KVEKEDAKNQEERLSMEVRSLLV 123 (359)
Q Consensus 101 r~~~~~~~~rre~L~~~ir~l~~ 123 (359)
..+...++.+.+.+...+..+..
T Consensus 62 ~ea~~~Le~~~e~le~~i~~l~~ 84 (105)
T cd00632 62 EEARTELKERLETIELRIKRLER 84 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555544433
No 192
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=35.39 E-value=4.4e+02 Score=28.01 Aligned_cols=122 Identities=16% Similarity=0.161 Sum_probs=0.0
Q ss_pred ChhHHHhhhhccCCCccccccCCCCccccchhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 018202 1 MEQRQRQRQHLQHPTSTSKAIDPENVKVIEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELE 80 (359)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~rL~~L~~~iq~a~~~~~~L~~qI~~~le~~~~~~~~~~~l~ 80 (359)
+.+|.-.-.| ..-++...+.-...|.++.-.+-+ .+.++-.+++++....-+-..+==-.|.....+ ++
T Consensus 367 L~qRl~El~~-~~~~~l~~~~~~~ap~~lq~~t~~----~i~~ml~~V~~ii~~Lt~~~~~~L~~Ik~SprY------vd 435 (507)
T PF05600_consen 367 LKQRLYELSN-EESSSLSFSQFQNAPSILQQQTAE----SIEEMLSAVEEIISQLTNPRTQHLFMIKSSPRY------VD 435 (507)
T ss_pred HHHHHHHhcc-cccchHHHHHhhhccHHHHhcCHH----HHHHHHHHHHHHHHHhcCHHHHHHHHHhcCHHH------HH
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHhHH
Q 018202 81 EMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQE 137 (359)
Q Consensus 81 ~~~~rl~~~~~~~~~~~~~~r~~~~~~~~rre~L~~~ir~l~~~~~~l~~a~~~Lqe 137 (359)
.+.+.|++.+..+++ .+...+.+..|+.+++.++..+......+-+..+.||.
T Consensus 436 rl~~~L~qk~~~~~k----~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~ 488 (507)
T PF05600_consen 436 RLVESLQQKLKQEEK----LRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQK 488 (507)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
No 193
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=35.28 E-value=2.8e+02 Score=23.52 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=17.3
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHH
Q 018202 39 ARLWSLSSALSQADDKKQTLQQK 61 (359)
Q Consensus 39 ~rL~~L~~~iq~a~~~~~~L~~q 61 (359)
++|.+|..+|.+...+...|.++
T Consensus 16 n~La~Le~slE~~K~S~~eL~kq 38 (107)
T PF09304_consen 16 NRLASLERSLEDEKTSQGELAKQ 38 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHh
Confidence 47788888888888887777444
No 194
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=35.25 E-value=4.5e+02 Score=25.96 Aligned_cols=88 Identities=24% Similarity=0.296 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHH-HHH-------H-HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 018202 50 QADDKKQTLQQKLQSLIQV-KAESLKRSNELEEMRE-RLE-------A-RRLLMEKMSMRSKVEKEDAKNQEERLSMEVR 119 (359)
Q Consensus 50 ~a~~~~~~L~~qI~~~le~-~~~~~~~~~~l~~~~~-rl~-------~-~~~~~~~~~~~~r~~~~~~~~rre~L~~~ir 119 (359)
.=.+++..|+.+++++.+- ..++++++..+.+-.+ +++ . .-..=.+|...+++++++-+.++..|...+
T Consensus 39 ~yk~kLa~Lq~~Leel~~g~~~eYl~~~~~L~~~~kerl~~aely~e~~~e~v~~eYe~E~~aAk~e~E~~~~lLke~l- 117 (291)
T KOG4466|consen 39 MYKDKLAQLQAQLEELGQGTAPEYLKRVKKLDESRKERLRVAELYREYCVERVEREYECEIKAAKKEYESKKKLLKENL- 117 (291)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3456777888888888773 4466666666653221 110 0 011112344455555555555555554443
Q ss_pred HHHHhchhHHHHHHHhHHhHHHhh
Q 018202 120 SLLVAGTALSVARKRLQESNRLLA 143 (359)
Q Consensus 120 ~l~~~~~~l~~a~~~Lqe~~~~L~ 143 (359)
...|+...++|+|.+.+++
T Consensus 118 -----~seleeKkrkieeeR~smD 136 (291)
T KOG4466|consen 118 -----ISELEEKKRKIEEERLSMD 136 (291)
T ss_pred -----HHHHHHHHHHHHHHHhhhh
Confidence 3455666677777655543
No 195
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=35.03 E-value=2.4e+02 Score=26.77 Aligned_cols=36 Identities=25% Similarity=0.243 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHhHH
Q 018202 102 VEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQE 137 (359)
Q Consensus 102 ~~~~~~~~rre~L~~~ir~l~~~~~~l~~a~~~Lqe 137 (359)
+++++++++++++..=..-+..+...-.+|+.++|.
T Consensus 23 ~A~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~ 58 (214)
T PF07795_consen 23 EANEELRKREEQIAHLKDLLKKAYQERDEAREQLQK 58 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777776665555555554444444544443
No 196
>PHA03332 membrane glycoprotein; Provisional
Probab=35.02 E-value=8.1e+02 Score=28.84 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=10.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHH
Q 018202 148 YGHLQKLQKMLRMRQQFMISQV 169 (359)
Q Consensus 148 ~~~L~~lq~~L~~rr~~lv~qL 169 (359)
+++|..+..++.+--.+|-.++
T Consensus 985 YQQlnsltnqv~~saskL~~qv 1006 (1328)
T PHA03332 985 YQQLNSLTNQVTQSASKLGYQV 1006 (1328)
T ss_pred HHHHHHHHHHHHHHHHHHHhHH
Confidence 3344455555554444444444
No 197
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=34.81 E-value=8e+02 Score=28.70 Aligned_cols=49 Identities=22% Similarity=0.359 Sum_probs=22.6
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHH
Q 018202 40 RLWSLSSALSQADDKKQTLQQKLQSLIQVKAESL-KRSNELEEMRERLEA 88 (359)
Q Consensus 40 rL~~L~~~iq~a~~~~~~L~~qI~~~le~~~~~~-~~~~~l~~~~~rl~~ 88 (359)
.|-....++++...+...|++.+.+.=..+..-+ +..+++..+..++++
T Consensus 756 ~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~ 805 (1174)
T KOG0933|consen 756 QIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEE 805 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHH
Confidence 3333444444444455555555554444333222 255555555555543
No 198
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=34.65 E-value=7.4e+02 Score=28.25 Aligned_cols=22 Identities=0% Similarity=0.104 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018202 47 ALSQADDKKQTLQQKLQSLIQV 68 (359)
Q Consensus 47 ~iq~a~~~~~~L~~qI~~~le~ 68 (359)
-|+...++.+.+...++.+...
T Consensus 883 ~IK~~~~tq~~~~~~~d~~~~~ 904 (1259)
T KOG0163|consen 883 KIKMPRITQREMNSEYDVAVKN 904 (1259)
T ss_pred HhcccccchHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 199
>PF11902 DUF3422: Protein of unknown function (DUF3422); InterPro: IPR021830 This family of proteins are functionally uncharacterised. This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 426 to 444 amino acids in length.
Probab=34.54 E-value=3.9e+02 Score=27.81 Aligned_cols=37 Identities=19% Similarity=0.108 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHhchhHHHHHHHhHHh
Q 018202 102 VEKEDAKNQEERLSMEV------------RSLLVAGTALSVARKRLQES 138 (359)
Q Consensus 102 ~~~~~~~~rre~L~~~i------------r~l~~~~~~l~~a~~~Lqe~ 138 (359)
+=-+=++.|.++|+++. |++..+-+.+..+.+++++.
T Consensus 269 AY~~iV~~RL~eLrE~~i~g~~tl~eF~~RRl~PAmrTC~a~~~R~~~L 317 (420)
T PF11902_consen 269 AYYEIVEQRLAELREERIPGYQTLSEFLERRLTPAMRTCEAVERRQEDL 317 (420)
T ss_pred HHHHHHHHHHHHhcccccCCCCcHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33444556667776663 45556666666555555554
No 200
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=34.08 E-value=6.1e+02 Score=27.13 Aligned_cols=44 Identities=23% Similarity=0.267 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 018202 75 RSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEV 118 (359)
Q Consensus 75 ~~~~l~~~~~rl~~~~~~~~~~~~~~r~~~~~~~~rre~L~~~i 118 (359)
+..++.+++++-+..++.+...+..--.+...++++-+++....
T Consensus 134 nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F 177 (560)
T PF06160_consen 134 NREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEF 177 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHH
Confidence 33344444445544444444444444555555555555555554
No 201
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=33.77 E-value=5.2e+02 Score=26.17 Aligned_cols=23 Identities=35% Similarity=0.317 Sum_probs=12.0
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHH
Q 018202 39 ARLWSLSSALSQADDKKQTLQQK 61 (359)
Q Consensus 39 ~rL~~L~~~iq~a~~~~~~L~~q 61 (359)
.+|..|...+..+.......+.+
T Consensus 215 ~~l~~l~~~l~~~~~~~~~~~~~ 237 (444)
T TIGR03017 215 ARLNELSAQLVAAQAQVMDASSK 237 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666665555554444333
No 202
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=33.67 E-value=3.9e+02 Score=24.73 Aligned_cols=13 Identities=0% Similarity=0.235 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 018202 56 QTLQQKLQSLIQV 68 (359)
Q Consensus 56 ~~L~~qI~~~le~ 68 (359)
+.+++.++++-+.
T Consensus 82 ~~I~~~L~~Ae~~ 94 (205)
T PRK06231 82 ELIEAEINQANEL 94 (205)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444333
No 203
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=33.34 E-value=5.4e+02 Score=26.30 Aligned_cols=13 Identities=23% Similarity=0.388 Sum_probs=6.0
Q ss_pred HHHHHhhhcccee
Q 018202 165 MISQVSFLYPVKI 177 (359)
Q Consensus 165 lv~qL~~IyPI~~ 177 (359)
+...|..+-|...
T Consensus 384 l~~rL~~lsP~~~ 396 (438)
T PRK00286 384 LAQQLEALSPLAT 396 (438)
T ss_pred HHHHHHhCCChhH
Confidence 3444444445443
No 204
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=33.17 E-value=7.4e+02 Score=27.81 Aligned_cols=18 Identities=17% Similarity=0.196 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018202 44 LSSALSQADDKKQTLQQK 61 (359)
Q Consensus 44 L~~~iq~a~~~~~~L~~q 61 (359)
=+.-|...+++=++|.++
T Consensus 451 kdE~I~~lm~EGEkLSK~ 468 (961)
T KOG4673|consen 451 KDEIINQLMAEGEKLSKK 468 (961)
T ss_pred HHHHHHHHHHHHHHhHHH
Confidence 344455555555555444
No 205
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=32.78 E-value=5.8e+02 Score=26.48 Aligned_cols=89 Identities=20% Similarity=0.295 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 018202 44 LSSALSQADDKKQTLQQKLQSLIQVKAESLKRSN-ELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLL 122 (359)
Q Consensus 44 L~~~iq~a~~~~~~L~~qI~~~le~~~~~~~~~~-~l~~~~~rl~~~~~~~~~~~~~~r~~~~~~~~rre~L~~~ir~l~ 122 (359)
+..|||+-.=+.++||.|+|++.+-.+...-+.. |+.-|++|+.- +.-.+-++++.--|.++.+|..+.
T Consensus 297 i~etLQEERyR~erLEEqLNdlteLqQnEi~nLKqElasmeervaY----------QsyERaRdIqEalEscqtrisKlE 366 (455)
T KOG3850|consen 297 IAETLQEERYRYERLEEQLNDLTELQQNEIANLKQELASMEERVAY----------QSYERARDIQEALESCQTRISKLE 366 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhchhHHHHHHHhHH---hHHHh
Q 018202 123 VAGTALSVARKRLQE---SNRLL 142 (359)
Q Consensus 123 ~~~~~l~~a~~~Lqe---~~~~L 142 (359)
...-.-+..+-..-+ +..+|
T Consensus 367 l~qq~qqv~Q~e~~~na~a~~ll 389 (455)
T KOG3850|consen 367 LQQQQQQVVQLEGLENAVARRLL 389 (455)
T ss_pred HHHHHHHHHHHHhhhhccHHHHH
No 206
>PF08181 DegQ: DegQ (SacQ) family; InterPro: IPR012554 This family consists of the DegQ (formerly sacQ) regulatory peptides. The DegQ family of peptides control the rates of synthesis of a class of both secreted and intracellular degradative enzymes in Bacillus subtilis. DegQ is 46 amino acids long and activates the synthesis of degradative enzymes. The expression of this peptide was shown to be subjected both to catabolite repression and DegS-DegU-mediated control. Thus allowing an increase in the rate of synthesis of degQ under conditions of nitrogen starvation [].
Probab=32.65 E-value=99 Score=21.74 Aligned_cols=31 Identities=19% Similarity=0.508 Sum_probs=22.8
Q ss_pred hhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Q 018202 31 WEDYDQELARLWSLSSALSQADDKKQTLQQKLQS 64 (359)
Q Consensus 31 ~~~~~~~l~rL~~L~~~iq~a~~~~~~L~~qI~~ 64 (359)
.++++| -||.|.+-|.+...+.+++-..|+.
T Consensus 6 ieelkq---ll~rle~eirett~sl~ninksidq 36 (46)
T PF08181_consen 6 IEELKQ---LLWRLENEIRETTDSLRNINKSIDQ 36 (46)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 456665 4688888888888888877776654
No 207
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=32.64 E-value=5.2e+02 Score=25.91 Aligned_cols=29 Identities=24% Similarity=0.218 Sum_probs=13.1
Q ss_pred HHHhHHhHHHhhcccccchHHHHHHHHHH
Q 018202 132 RKRLQESNRLLAGEKGYGHLQKLQKMLRM 160 (359)
Q Consensus 132 ~~~Lqe~~~~L~~e~~~~~L~~lq~~L~~ 160 (359)
..+|++--..+..+.+......+|.-++.
T Consensus 344 vsKLk~et~~mnv~igv~ehs~lq~~l~~ 372 (384)
T KOG0972|consen 344 VSKLKEETQTMNVQIGVFEHSILQTYLRD 372 (384)
T ss_pred HHHHHHHHHhhhhheehhhHHHHHHHHHH
Confidence 44444444444444444334445555444
No 208
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=32.21 E-value=6.7e+02 Score=27.03 Aligned_cols=25 Identities=12% Similarity=0.143 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHhhhccceeeCC
Q 018202 156 KMLRMRQQFMISQVSFLYPVKILVG 180 (359)
Q Consensus 156 ~~L~~rr~~lv~qL~~IyPI~~~~~ 180 (359)
..|.-+|-.|+.+|+.+.+|.....
T Consensus 197 NdLlDqRD~Lv~eLs~~i~i~V~~~ 221 (552)
T COG1256 197 NDLLDQRDQLVDELSQLIGISVSKR 221 (552)
T ss_pred hhHHHHHHHHHHHHHhhcceEEEEc
Confidence 4566678899999999999998753
No 209
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=32.10 E-value=5.9e+02 Score=26.32 Aligned_cols=10 Identities=40% Similarity=0.660 Sum_probs=4.4
Q ss_pred ccCCCccccc
Q 018202 11 LQHPTSTSKA 20 (359)
Q Consensus 11 ~~~~~~~~~~ 20 (359)
...||-|.++
T Consensus 241 ~ra~TPtaaa 250 (432)
T TIGR00237 241 LRAPTPSAAA 250 (432)
T ss_pred ccCCCcHHHH
Confidence 3444444443
No 210
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=32.06 E-value=4e+02 Score=24.40 Aligned_cols=27 Identities=19% Similarity=0.225 Sum_probs=15.1
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018202 42 WSLSSALSQADDKKQTLQQKLQSLIQV 68 (359)
Q Consensus 42 ~~L~~~iq~a~~~~~~L~~qI~~~le~ 68 (359)
..+..++..+......++.+++.+...
T Consensus 40 ~~a~~~~a~~~a~~~~le~~~~~~~~~ 66 (221)
T PF04012_consen 40 RKARQALARVMANQKRLERKLDEAEEE 66 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335555555666666666666555543
No 211
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=31.78 E-value=3e+02 Score=22.84 Aligned_cols=24 Identities=21% Similarity=0.422 Sum_probs=15.7
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHHH
Q 018202 41 LWSLSSALSQADDKKQTLQQKLQS 64 (359)
Q Consensus 41 L~~L~~~iq~a~~~~~~L~~qI~~ 64 (359)
+|..+.-|..+.++.+..++.|..
T Consensus 20 l~~qs~~i~~L~a~n~~q~~tI~q 43 (110)
T PF10828_consen 20 LWYQSQRIDRLRAENKAQAQTIQQ 43 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666677777777666666543
No 212
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=31.62 E-value=7.1e+02 Score=27.13 Aligned_cols=84 Identities=12% Similarity=0.133 Sum_probs=44.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHhHHhHHHhhcccccchHHHHHHHHHHHHHHHHHHHh
Q 018202 91 LLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAGEKGYGHLQKLQKMLRMRQQFMISQVS 170 (359)
Q Consensus 91 ~~~~~~~~~~r~~~~~~~~rre~L~~~ir~l~~~~~~l~~a~~~Lqe~~~~L~~e~~~~~L~~lq~~L~~rr~~lv~qL~ 170 (359)
..++.+..+.+.....++..++++..+|...... +...-++|.+.+..+......+ .-...|.-+|-.++.||+
T Consensus 146 ~~A~~La~~~n~~~~~L~~~~~~~~~~i~~~V~~---iN~ll~qIa~LN~qI~~~~~~g---~~~ndLlDqRD~ll~eLS 219 (627)
T PRK06665 146 ERAQSLGERIHDRYRSLERIRDMANDEIEITVEE---INNILRNIADLNEQIVKSQAMG---DNPNDLLDRRDLLVDKLS 219 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhcCC---CCchhhHHHHHHHHHHHH
Confidence 3344444445555555555555555555322222 1222233333333322111101 124568888999999999
Q ss_pred hhccceeeCC
Q 018202 171 FLYPVKILVG 180 (359)
Q Consensus 171 ~IyPI~~~~~ 180 (359)
.+-+|+....
T Consensus 220 ~~v~i~v~~~ 229 (627)
T PRK06665 220 SLIDVSIERS 229 (627)
T ss_pred hhcCeEEEEc
Confidence 9999998753
No 213
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=31.52 E-value=5.3e+02 Score=25.62 Aligned_cols=43 Identities=14% Similarity=0.176 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 018202 47 ALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLL 92 (359)
Q Consensus 47 ~iq~a~~~~~~L~~qI~~~le~~~~~~~~~~~l~~~~~rl~~~~~~ 92 (359)
++++...+..-++.+...+.-.+. ++-|+-..+.-.++..+..
T Consensus 78 s~r~lk~~l~evEekyrkAMv~na---QLDNek~~l~yqvd~Lkd~ 120 (302)
T PF09738_consen 78 SLRDLKDSLAEVEEKYRKAMVSNA---QLDNEKSALMYQVDLLKDK 120 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHh---hhchHHHHHHHHHHHHHHH
Confidence 455555555555555555444332 3444444444444333333
No 214
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=31.10 E-value=5.5e+02 Score=25.67 Aligned_cols=30 Identities=20% Similarity=0.378 Sum_probs=15.9
Q ss_pred cccchhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHH
Q 018202 27 KVIEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLI 66 (359)
Q Consensus 27 ~~~~~~~~~~~l~rL~~L~~~iq~a~~~~~~L~~qI~~~l 66 (359)
+.++.+.++. =++.+.+++..|..+...+-
T Consensus 158 ~~~~le~Lq~----------Klk~LEeEN~~LR~Ea~~L~ 187 (306)
T PF04849_consen 158 KCIQLEALQE----------KLKSLEEENEQLRSEASQLK 187 (306)
T ss_pred cchhHHHHHH----------HHHHHHHHHHHHHHHHHHhh
Confidence 4455666664 34445555555555555444
No 215
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=31.05 E-value=7.7e+02 Score=27.36 Aligned_cols=19 Identities=37% Similarity=0.554 Sum_probs=13.2
Q ss_pred chhhhHHHHHHHhcHHHHH
Q 018202 30 EWEDYDQELARLWSLSSAL 48 (359)
Q Consensus 30 ~~~~~~~~l~rL~~L~~~i 48 (359)
+.++|+..|+||.+=-+++
T Consensus 105 ~~~~yQerLaRLe~dkesL 123 (861)
T KOG1899|consen 105 EYPEYQERLARLEMDKESL 123 (861)
T ss_pred cchHHHHHHHHHhcchhhh
Confidence 4788998888876654443
No 216
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=31.00 E-value=4.9e+02 Score=25.02 Aligned_cols=16 Identities=25% Similarity=0.364 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 018202 44 LSSALSQADDKKQTLQ 59 (359)
Q Consensus 44 L~~~iq~a~~~~~~L~ 59 (359)
|+.+|.+....-+.+.
T Consensus 167 L~~~L~eiR~~ye~~~ 182 (312)
T PF00038_consen 167 LSAALREIRAQYEEIA 182 (312)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred chhhhhhHHHHHHHHH
Confidence 5556655544444333
No 217
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=30.95 E-value=6.3e+02 Score=26.33 Aligned_cols=11 Identities=18% Similarity=0.262 Sum_probs=5.7
Q ss_pred CCcccCcccCC
Q 018202 296 KPAEFPLFLEG 306 (359)
Q Consensus 296 ~~r~fPLy~~~ 306 (359)
+.+.-|.|++.
T Consensus 380 ger~i~~f~d~ 390 (499)
T COG4372 380 GERLIPRFCDR 390 (499)
T ss_pred cchhhHHHHhh
Confidence 34455666553
No 218
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=30.93 E-value=2.9e+02 Score=22.34 Aligned_cols=19 Identities=5% Similarity=0.136 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 018202 101 KVEKEDAKNQEERLSMEVR 119 (359)
Q Consensus 101 r~~~~~~~~rre~L~~~ir 119 (359)
+.++.++..|-+.....|+
T Consensus 66 e~~~~Evs~rL~~a~e~Ir 84 (89)
T PF13747_consen 66 EEANREVSRRLDSAIETIR 84 (89)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444443333
No 219
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=30.71 E-value=5.7e+02 Score=25.69 Aligned_cols=70 Identities=13% Similarity=0.150 Sum_probs=52.1
Q ss_pred hhHHHHHHHHHH----HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHhHHhHHHhhc
Q 018202 75 RSNELEEMRERL----EARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAG 144 (359)
Q Consensus 75 ~~~~l~~~~~rl----~~~~~~~~~~~~~~r~~~~~~~~rre~L~~~ir~l~~~~~~l~~a~~~Lqe~~~~L~~ 144 (359)
.+.+...++..+ ......++++...+..+.+.+..|..-|..++..+...-+++++....+++.-..+++
T Consensus 228 H~~QM~s~~~nIe~~~~~~~~~Ldklh~eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~ 301 (384)
T KOG0972|consen 228 HLEQMNSMHKNIEQKVGNVGPYLDKLHKEITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQASV 301 (384)
T ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344444444443 4566788899999999999999999999999988887777777777777776555544
No 220
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=30.56 E-value=8.3e+02 Score=27.57 Aligned_cols=30 Identities=33% Similarity=0.591 Sum_probs=16.4
Q ss_pred hhhhHHHH-HHHhcHHHHHHHHHHHHHHHHH
Q 018202 31 WEDYDQEL-ARLWSLSSALSQADDKKQTLQQ 60 (359)
Q Consensus 31 ~~~~~~~l-~rL~~L~~~iq~a~~~~~~L~~ 60 (359)
|+-++..| .+|..+..-+..+.++...|..
T Consensus 83 ~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~ 113 (769)
T PF05911_consen 83 WEKIKSELEAKLAELSKRLAESAAENSALSK 113 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 77666333 2455555555555555555544
No 221
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=30.09 E-value=2.9e+02 Score=23.20 Aligned_cols=31 Identities=32% Similarity=0.414 Sum_probs=25.2
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018202 40 RLWSLSSALSQADDKKQTLQQKLQSLIQVKA 70 (359)
Q Consensus 40 rL~~L~~~iq~a~~~~~~L~~qI~~~le~~~ 70 (359)
+|..|+.-|.+...+...|..++..+++.+.
T Consensus 9 ~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~ 39 (107)
T PF06156_consen 9 RLDQLEQQLGQLLEELEELKKQLQELLEENA 39 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677888888888888888888888888774
No 222
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=29.98 E-value=7.4e+02 Score=26.81 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 018202 48 LSQADDKKQTLQQKLQSLIQVKA 70 (359)
Q Consensus 48 iq~a~~~~~~L~~qI~~~le~~~ 70 (359)
|....++.+.+=..++.-++.++
T Consensus 283 l~~I~e~ie~lYd~lE~EveA~~ 305 (570)
T COG4477 283 LGLIQEKIESLYDLLEREVEAKN 305 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444333
No 223
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=29.88 E-value=8.6e+02 Score=27.55 Aligned_cols=36 Identities=17% Similarity=0.252 Sum_probs=25.8
Q ss_pred CCCCcccCcccCCCchhhHHHHHHHHHHHHHHHHHhc
Q 018202 294 NTKPAEFPLFLEGQDATRAAYAVFLLNKDIEQLLNYI 330 (359)
Q Consensus 294 ~~~~r~fPLy~~~~d~~~F~yaV~LLNknI~qL~~~~ 330 (359)
.|...-|.-|.- .|-.-|.-|+.-|--||+-|=.+.
T Consensus 819 ~wS~ss~stfts-~de~~f~~glaalda~iarlq~sl 854 (861)
T PF15254_consen 819 DWSISSFSTFTS-RDEQDFRNGLAALDANIARLQRSL 854 (861)
T ss_pred cccccccccccc-ccHHHHHhhHHHhhhhHHHHHHHH
Confidence 344555555533 366789999999999999886654
No 224
>PRK07191 flgK flagellar hook-associated protein FlgK; Validated
Probab=29.64 E-value=6.6e+02 Score=26.09 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHhhhccceeeCC
Q 018202 155 QKMLRMRQQFMISQVSFLYPVKILVG 180 (359)
Q Consensus 155 q~~L~~rr~~lv~qL~~IyPI~~~~~ 180 (359)
...|.-+|-.++.+|+.+-+|+....
T Consensus 192 ~ndL~DqRD~ll~eLS~~v~i~v~~~ 217 (456)
T PRK07191 192 ISDLLDQRDLQIKKLSGLIEVRVVQQ 217 (456)
T ss_pred CchhHHHHHHHHHHHHhhcCeEEEEc
Confidence 35678889999999999999998753
No 225
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=29.49 E-value=7.6e+02 Score=27.12 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHH
Q 018202 59 QQKLQSLIQVKAESLKRSNELEE 81 (359)
Q Consensus 59 ~~qI~~~le~~~~~~~~~~~l~~ 81 (359)
-++++.+|-.+...++..|.+..
T Consensus 300 GrEVeNLilENsqLLetKNALNi 322 (832)
T KOG2077|consen 300 GREVENLILENSQLLETKNALNI 322 (832)
T ss_pred hHHHHHHHHhhHHHHhhhhHHHH
Confidence 34444444444444444444433
No 226
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=29.42 E-value=2.9e+02 Score=27.59 Aligned_cols=19 Identities=16% Similarity=0.496 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 018202 49 SQADDKKQTLQQKLQSLIQ 67 (359)
Q Consensus 49 q~a~~~~~~L~~qI~~~le 67 (359)
+++++++..+..++.++++
T Consensus 2 ~el~~~~~~~~~~~r~l~~ 20 (378)
T TIGR01554 2 SELKEQREEIVAEIRSLLD 20 (378)
T ss_pred hhHHHHHHHHHHHHHHHHh
Confidence 4555666666666666665
No 227
>PRK06799 flgK flagellar hook-associated protein FlgK; Validated
Probab=28.77 E-value=6.7e+02 Score=25.91 Aligned_cols=24 Identities=8% Similarity=0.130 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHhhhccceee
Q 018202 155 QKMLRMRQQFMISQVSFLYPVKIL 178 (359)
Q Consensus 155 q~~L~~rr~~lv~qL~~IyPI~~~ 178 (359)
...|.-+|..++.+|+.+-+|+..
T Consensus 195 ~ndL~DqRD~ll~eLS~~i~i~v~ 218 (431)
T PRK06799 195 PNQLLDERDRILTEMSKYANIEVS 218 (431)
T ss_pred chhhHHHHHHHHHHHHhhcCeEEE
Confidence 346788899999999999999975
No 228
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=28.75 E-value=4.5e+02 Score=27.76 Aligned_cols=10 Identities=40% Similarity=0.594 Sum_probs=7.1
Q ss_pred ceEEeccccC
Q 018202 209 SLTILGLHLT 218 (359)
Q Consensus 209 ~~tI~Gl~LP 218 (359)
-.||.|+++-
T Consensus 494 mctvdglhfn 503 (699)
T KOG4367|consen 494 MCTVDGLHFN 503 (699)
T ss_pred eEEecceecc
Confidence 4677788874
No 229
>PLN03223 Polycystin cation channel protein; Provisional
Probab=28.68 E-value=3.2e+02 Score=32.86 Aligned_cols=63 Identities=13% Similarity=0.179 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 018202 52 DDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSME 117 (359)
Q Consensus 52 ~~~~~~L~~qI~~~le~~~~~~~~~~~l~~~~~rl~~~~~~~~~~~~~~r~~~~~~~~rre~L~~~ 117 (359)
..-.+.|+.+++++|.+++.++.-..+...+.+ .+..++++-.++++++...++++...++..
T Consensus 836 ~~~~~~~~~~~~~il~kq~~al~~~~~~~~~~~---~~~~la~~~~~~~~~l~~av~~q~~~i~~a 898 (1634)
T PLN03223 836 KAGQAALEAKLDEILGKQQQALAAAQESLAIQQ---RTNGLAERQAAAIEKLAKAVEKQLSSIKSA 898 (1634)
T ss_pred HhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666677777665554432222222222 234455555555666666666666555444
No 230
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=28.47 E-value=6e+02 Score=25.27 Aligned_cols=31 Identities=13% Similarity=0.302 Sum_probs=19.3
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018202 40 RLWSLSSALSQADDKKQTLQQKLQSLIQVKA 70 (359)
Q Consensus 40 rL~~L~~~iq~a~~~~~~L~~qI~~~le~~~ 70 (359)
+...|...+.+...+++.|.+++..+-+.+.
T Consensus 14 K~~~lk~~~~e~~ekR~El~~~~~~~~ekRd 44 (294)
T COG1340 14 KRKQLKEEIEELKEKRDELRKEASELAEKRD 44 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3335666666677777666666666666553
No 231
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=28.40 E-value=5.7e+02 Score=25.02 Aligned_cols=10 Identities=20% Similarity=0.109 Sum_probs=4.7
Q ss_pred ecCCcceeec
Q 018202 265 LGGSHTYIND 274 (359)
Q Consensus 265 ~~gSrSyI~D 274 (359)
+.|.=++|..
T Consensus 277 ~~G~V~~Is~ 286 (346)
T PRK10476 277 FEGKVDSIGW 286 (346)
T ss_pred EEEEEEEECC
Confidence 4454455543
No 232
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=28.39 E-value=5.1e+02 Score=30.29 Aligned_cols=49 Identities=16% Similarity=0.376 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 018202 48 LSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKE 105 (359)
Q Consensus 48 iq~a~~~~~~L~~qI~~~le~~~~~~~~~~~l~~~~~rl~~~~~~~~~~~~~~r~~~~ 105 (359)
|.+..++.++|..+++.+ ...++.+.+++++...++++.....-.....
T Consensus 366 irElReEve~lr~qL~~a---------e~~~~~el~e~l~esekli~ei~~twEEkl~ 414 (1714)
T KOG0241|consen 366 IRELREEVEKLREQLEQA---------EAMKLPELKEKLEESEKLIKEITVTWEEKLR 414 (1714)
T ss_pred HHHHHHHHHHHHHHHhhh---------hhccchHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 666666666666665541 1224455556665555555554443333333
No 233
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=28.38 E-value=6e+02 Score=25.35 Aligned_cols=12 Identities=0% Similarity=0.127 Sum_probs=6.3
Q ss_pred cHHHHHHHHHHH
Q 018202 43 SLSSALSQADDK 54 (359)
Q Consensus 43 ~L~~~iq~a~~~ 54 (359)
||+.+++|+..-
T Consensus 154 nIEKSvKDLqRc 165 (302)
T PF07139_consen 154 NIEKSVKDLQRC 165 (302)
T ss_pred cHHHHHHHHHHH
Confidence 555555555443
No 234
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=28.09 E-value=7.5e+02 Score=26.25 Aligned_cols=17 Identities=29% Similarity=0.487 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHhcCCC
Q 018202 242 GYIAHVVSLIASYLEVP 258 (359)
Q Consensus 242 GyvAhlv~lls~yL~vp 258 (359)
|..+|++..+...|-++
T Consensus 494 g~~~~~~s~~~S~l~~~ 510 (582)
T PF09731_consen 494 GLLGHLLSYLFSLLLFR 510 (582)
T ss_pred CHHHHHHHHHHheeeee
Confidence 67777777777777554
No 235
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.09 E-value=3.9e+02 Score=22.97 Aligned_cols=18 Identities=22% Similarity=0.442 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018202 52 DDKKQTLQQKLQSLIQVK 69 (359)
Q Consensus 52 ~~~~~~L~~qI~~~le~~ 69 (359)
..+.+.+++|+++.++.-
T Consensus 28 ~~k~~~tq~QvdeVv~IM 45 (116)
T KOG0860|consen 28 NDKLQQTQAQVDEVVDIM 45 (116)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 345556677777776653
No 236
>PLN03223 Polycystin cation channel protein; Provisional
Probab=28.02 E-value=1e+03 Score=28.89 Aligned_cols=43 Identities=16% Similarity=0.258 Sum_probs=25.5
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 018202 38 LARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRE 84 (359)
Q Consensus 38 l~rL~~L~~~iq~a~~~~~~L~~qI~~~le~~~~~~~~~~~l~~~~~ 84 (359)
-+.|.|+-.++...--+...|..+|+.+=.. .++.|++.+++.
T Consensus 777 ~~~l~~~~~~v~~~~t~q~~~~~~~~~~~~~----~~~~~~~a~~~~ 819 (1634)
T PLN03223 777 AATLTNILTQVGTLSTTQTSLDTQIETLKTQ----QDRANQEAEAHH 819 (1634)
T ss_pred HHHHHHHHHHhhhhhhhhhhHHHHHHHHHHH----HHHHHHHHHhhc
Confidence 3456666666766666666676666654332 345556655554
No 237
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=27.89 E-value=8.2e+02 Score=27.94 Aligned_cols=8 Identities=0% Similarity=-0.014 Sum_probs=3.4
Q ss_pred ceEEeccc
Q 018202 209 SLTILGLH 216 (359)
Q Consensus 209 ~~tI~Gl~ 216 (359)
.|-+.+|.
T Consensus 1064 KYDl~~wk 1071 (1259)
T KOG0163|consen 1064 KYDLSKWK 1071 (1259)
T ss_pred cccccccc
Confidence 34444443
No 238
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=27.89 E-value=8.5e+02 Score=26.85 Aligned_cols=18 Identities=6% Similarity=0.128 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHhcCCCC
Q 018202 317 FLLNKDIEQLLNYIGVKS 334 (359)
Q Consensus 317 ~LLNknI~qL~~~~Gl~~ 334 (359)
.-+.-|++..+...|.++
T Consensus 546 Ttva~nLA~~la~~G~rV 563 (726)
T PRK09841 546 TFVSSTLAAVIAQSDQKV 563 (726)
T ss_pred HHHHHHHHHHHHhCCCeE
Confidence 334445555555555444
No 239
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=27.75 E-value=5.1e+02 Score=24.20 Aligned_cols=24 Identities=21% Similarity=0.163 Sum_probs=18.0
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHH
Q 018202 42 WSLSSALSQADDKKQTLQQKLQSL 65 (359)
Q Consensus 42 ~~L~~~iq~a~~~~~~L~~qI~~~ 65 (359)
+.|-+||.|+...+.+|..+-..+
T Consensus 4 ~dL~~~v~dL~~~n~~L~~en~kL 27 (193)
T PF14662_consen 4 SDLLSCVEDLQLNNQKLADENAKL 27 (193)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHH
Confidence 357788889888888888774443
No 240
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=27.50 E-value=2.7e+02 Score=29.48 Aligned_cols=20 Identities=10% Similarity=0.237 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 018202 46 SALSQADDKKQTLQQKLQSL 65 (359)
Q Consensus 46 ~~iq~a~~~~~~L~~qI~~~ 65 (359)
+++.+...+.+.|+++|+++
T Consensus 69 SALteqQ~kasELEKqLaaL 88 (475)
T PRK13729 69 HATTEMQVTAAQMQKQYEEI 88 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666555
No 241
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=27.35 E-value=5.6e+02 Score=24.58 Aligned_cols=17 Identities=12% Similarity=0.177 Sum_probs=7.2
Q ss_pred hhHHHHHHHhHHhHHHh
Q 018202 126 TALSVARKRLQESNRLL 142 (359)
Q Consensus 126 ~~l~~a~~~Lqe~~~~L 142 (359)
....+|+..+.-+...|
T Consensus 91 ~~h~aAKe~v~laEq~l 107 (239)
T PF05276_consen 91 SMHAAAKEMVALAEQSL 107 (239)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444443333
No 242
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=27.10 E-value=5.2e+02 Score=24.15 Aligned_cols=126 Identities=18% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--HHHHH-------
Q 018202 48 LSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEER--LSMEV------- 118 (359)
Q Consensus 48 iq~a~~~~~~L~~qI~~~le~~~~~~~~~~~l~~~~~rl~~~~~~~~~~~~~~r~~~~~~~~rre~--L~~~i------- 118 (359)
|+.+... ...+..-..+++.-..++..+.++.....+.+.-...++.+=..++.+.+++.+-+.. -...+
T Consensus 3 L~~l~~~-~~~~~~~~~~i~~l~~al~~L~~~~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~ 81 (240)
T PF12795_consen 3 LDQLNKR-KLDEPEQKALIQDLQQALSFLDEIKKQKKRAAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILANLSLE 81 (240)
T ss_pred HhHhhcc-CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCcccCCHH
Q ss_pred ---HHHHHhchhHHHHHHHhHHhHHHh-hcccccchHHHHHHHHHHHHHHHHHHHhhhcc
Q 018202 119 ---RSLLVAGTALSVARKRLQESNRLL-AGEKGYGHLQKLQKMLRMRQQFMISQVSFLYP 174 (359)
Q Consensus 119 ---r~l~~~~~~l~~a~~~Lqe~~~~L-~~e~~~~~L~~lq~~L~~rr~~lv~qL~~IyP 174 (359)
..+......+...+.+|.+.+..| .......+........+.+...+-.+|...+|
T Consensus 82 eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~ 141 (240)
T PF12795_consen 82 ELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPP 141 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCC
No 243
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=27.05 E-value=7.3e+02 Score=25.80 Aligned_cols=7 Identities=29% Similarity=0.453 Sum_probs=3.0
Q ss_pred HHHHHHH
Q 018202 322 DIEQLLN 328 (359)
Q Consensus 322 nI~qL~~ 328 (359)
++..++.
T Consensus 308 el~~~L~ 314 (445)
T PRK13428 308 RLAILLS 314 (445)
T ss_pred HHHHHHh
Confidence 3444443
No 244
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=26.78 E-value=4e+02 Score=22.63 Aligned_cols=87 Identities=16% Similarity=0.200 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH---HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhH
Q 018202 52 DDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARR---LLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTAL 128 (359)
Q Consensus 52 ~~~~~~L~~qI~~~le~~~~~~~~~~~l~~~~~rl~~~~---~~~~~~~~~~r~~~~~~~~rre~L~~~ir~l~~~~~~l 128 (359)
..+...|+.+|+-+=... ...+++-+..+-..++.-+ .+..+....+......|..|..+|...... ...+-+
T Consensus 23 ~~K~~~Ie~qI~~Ak~~g--N~~rv~GLe~AL~~v~~~Ctd~~l~~e~q~ki~~~~~kV~ere~eL~eA~~~--G~~~KI 98 (115)
T PF06476_consen 23 EAKEQAIEKQIEYAKAHG--NQHRVAGLEKALEEVKAHCTDEGLKAERQQKIAEKQQKVAEREAELKEAQAK--GDSDKI 98 (115)
T ss_pred HHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCHHHH
Confidence 456677777776554421 1124555555444442111 223333344555666666777777666522 011234
Q ss_pred HHHHHHhHHhHHHh
Q 018202 129 SVARKRLQESNRLL 142 (359)
Q Consensus 129 ~~a~~~Lqe~~~~L 142 (359)
...+++|.|++.-|
T Consensus 99 ~K~~~KL~ea~~eL 112 (115)
T PF06476_consen 99 AKRQKKLAEAKAEL 112 (115)
T ss_pred HHHHHHHHHHHHHH
Confidence 45566666665444
No 245
>PHA03247 large tegument protein UL36; Provisional
Probab=26.34 E-value=1.2e+03 Score=30.34 Aligned_cols=139 Identities=12% Similarity=0.077 Sum_probs=86.5
Q ss_pred hhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 018202 31 WEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAE--SLKRSNE-LEEMRERLEARRLLMEKMSMRSKVEKEDA 107 (359)
Q Consensus 31 ~~~~~~~l~rL~~L~~~iq~a~~~~~~L~~qI~~~le~~~~--~~~~~~~-l~~~~~rl~~~~~~~~~~~~~~r~~~~~~ 107 (359)
|..|.++.-|.|.=.+....|.+.-..|+..-+-++.-+.+ +-++-.. +-....|..++...++.+....+.....+
T Consensus 1731 W~~F~r~~~~~~~S~e~~~~A~~~a~aLQas~~~V~~Lrad~~Y~RLPak~~g~i~aK~aeR~~ale~f~~~~~~~e~~~ 1810 (3151)
T PHA03247 1731 WGRFGRVRGGAWKSPEALRAAREQLRALQTATNTVLGLRADAHYERLPAKYQGALGAKSAERAGAVEELGAAVARHDGLL 1810 (3151)
T ss_pred HHHHHHhccccccChHHHHHHHHHHHHHHHHHHHHHhhhcchhhccCCHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888888888888888888888888775543 2221111 12223466777788888888888887778
Q ss_pred HHHHHHHHHHH------HHHHHhchhHHHHHHHhHHhHHHhhcccccchHHHHHHHHHHHHHHHHHHHhhhccceee
Q 018202 108 KNQEERLSMEV------RSLLVAGTALSVARKRLQESNRLLAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKIL 178 (359)
Q Consensus 108 ~~rre~L~~~i------r~l~~~~~~l~~a~~~Lqe~~~~L~~e~~~~~L~~lq~~L~~rr~~lv~qL~~IyPI~~~ 178 (359)
.+.+|+|..+| +.|......+.+-.++|--- ...--.-.+.|-+.|-.|-..-+.|+++...
T Consensus 1811 ~rl~d~l~~rip~E~~~d~Lr~lla~FD~~a~~LPkW---------~~~~~~~~r~Ll~lRl~LY~aYa~~~~~~~~ 1878 (3151)
T PHA03247 1811 ARLREEVVARVPWEMNADALGRLLAEFDALAGDLAPW---------AVDEFRGARALVQHRLGLYSAYAKARAQTGA 1878 (3151)
T ss_pred HHHHHHHHHhCCcccCHHHHHHHHHHHHHHHhhccHH---------HHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Confidence 78888998887 33444433343333323211 0000012345555566666677788876543
No 246
>PTZ00491 major vault protein; Provisional
Probab=26.32 E-value=1e+03 Score=27.22 Aligned_cols=15 Identities=33% Similarity=0.319 Sum_probs=7.4
Q ss_pred hhHHHHHHhHHHHHH
Q 018202 231 KKEVQRSATALGYIA 245 (359)
Q Consensus 231 ~~~~~~isaALGyvA 245 (359)
++++.-.++|=|.+.
T Consensus 831 ~sPiNLf~ta~gl~g 845 (850)
T PTZ00491 831 KSPINLFNTANGLIG 845 (850)
T ss_pred CCchhHHhhhhhhhc
Confidence 344444555555544
No 247
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=26.02 E-value=6.5e+02 Score=24.84 Aligned_cols=20 Identities=20% Similarity=0.228 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 018202 44 LSSALSQADDKKQTLQQKLQ 63 (359)
Q Consensus 44 L~~~iq~a~~~~~~L~~qI~ 63 (359)
+...++.+....+.++.+|+
T Consensus 142 ~~~~~~~l~~~i~~~~~~i~ 161 (423)
T TIGR01843 142 LRAQLELILAQIKQLEAELA 161 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444443
No 248
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=25.65 E-value=8.3e+02 Score=25.95 Aligned_cols=10 Identities=20% Similarity=0.547 Sum_probs=4.6
Q ss_pred CcceeecCCC
Q 018202 268 SHTYINDYAP 277 (359)
Q Consensus 268 SrSyI~D~i~ 277 (359)
|.-|+.=++|
T Consensus 307 t~DfVlMFiP 316 (475)
T PRK10361 307 TLDYVLMFIP 316 (475)
T ss_pred CCCEEEEeec
Confidence 4444444443
No 249
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=25.50 E-value=4.2e+02 Score=22.47 Aligned_cols=23 Identities=4% Similarity=0.102 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 018202 100 SKVEKEDAKNQEERLSMEVRSLL 122 (359)
Q Consensus 100 ~r~~~~~~~~rre~L~~~ir~l~ 122 (359)
.+..+....+|..+|+++|.++.
T Consensus 49 L~~q~~s~~qr~~eLqaki~ea~ 71 (107)
T PF09304_consen 49 LQAQNASRNQRIAELQAKIDEAR 71 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556666666664443
No 250
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=25.31 E-value=5e+02 Score=23.30 Aligned_cols=10 Identities=10% Similarity=0.165 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 018202 57 TLQQKLQSLI 66 (359)
Q Consensus 57 ~L~~qI~~~l 66 (359)
.+...++++-
T Consensus 59 ~I~~~l~~Ae 68 (184)
T CHL00019 59 TILNTIRNSE 68 (184)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 251
>PLN02678 seryl-tRNA synthetase
Probab=25.14 E-value=6.4e+02 Score=26.43 Aligned_cols=13 Identities=23% Similarity=0.534 Sum_probs=6.6
Q ss_pred HHHHHHHHhcCCC
Q 018202 321 KDIEQLLNYIGVK 333 (359)
Q Consensus 321 knI~qL~~~~Gl~ 333 (359)
.+++.++...|++
T Consensus 310 ~~~~~i~~~L~lp 322 (448)
T PLN02678 310 KNSEDFYQSLGIP 322 (448)
T ss_pred HHHHHHHHHcCCC
Confidence 4445555555544
No 252
>PF05400 FliT: Flagellar protein FliT; InterPro: IPR008622 This entry represents the bacterial flagellar FliT family of dual-function proteins. Together with FlgN, FliT has been proposed to act as a substrate-specific export chaperone, facilitating the incorporation of the enterobacterial hook-associated axial proteins (HAPs) FlgK/FlgL and FliD into the growing flagellum []. FliT has also been shown to act as a transcriptional regulator in Salmonella typhimurium [].; GO: 0019861 flagellum; PDB: 3A7M_A 3H3M_B 3NKZ_C 2G42_A 2FZT_B.
Probab=24.51 E-value=3.1e+02 Score=20.57 Aligned_cols=20 Identities=15% Similarity=0.235 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 018202 101 KVEKEDAKNQEERLSMEVRS 120 (359)
Q Consensus 101 r~~~~~~~~rre~L~~~ir~ 120 (359)
+....-++.++++|...++.
T Consensus 54 ~~i~~ll~~~~~~l~~~l~~ 73 (84)
T PF05400_consen 54 QEIRALLQARRDELKQELRQ 73 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444555566666666543
No 253
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=24.48 E-value=7.4e+02 Score=25.00 Aligned_cols=22 Identities=18% Similarity=0.330 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHhhhccce
Q 018202 154 LQKMLRMRQQFMISQVSFLYPVK 176 (359)
Q Consensus 154 lq~~L~~rr~~lv~qL~~IyPI~ 176 (359)
++..+..++. .+.|.-...|=+
T Consensus 73 L~~~Ik~r~~-~l~DmEa~LPkk 94 (330)
T PF07851_consen 73 LEEDIKERRC-QLFDMEAFLPKK 94 (330)
T ss_pred HHHHHHHHHh-hHHHHHhhCCCC
Confidence 4444554442 334444333433
No 254
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=24.43 E-value=9.6e+02 Score=26.28 Aligned_cols=92 Identities=13% Similarity=0.107 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH--HHHhchhHHHHHHHhHHhHH------HhhcccccchHHHHH-
Q 018202 85 RLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRS--LLVAGTALSVARKRLQESNR------LLAGEKGYGHLQKLQ- 155 (359)
Q Consensus 85 rl~~~~~~~~~~~~~~r~~~~~~~~rre~L~~~ir~--l~~~~~~l~~a~~~Lqe~~~------~L~~e~~~~~L~~lq- 155 (359)
.++.+...++......+....+++.+-.+|..+.++ +.++.--+.-|.++|+-..+ +|.. ...+|..+.
T Consensus 382 ~~~~~l~~le~~l~~~~~~~~~L~~~~~~l~~~r~dW~laEae~Ll~lA~q~L~l~~dv~~A~~~L~~--AD~~La~~~~ 459 (656)
T PRK06975 382 QLDSQFAQLDGKLADAQSAQQALEQQYQDLSRNRDDWMIAEVEQMLSSASQQLQLTGNVQLALIALQN--ADARLATSDS 459 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH--HHHHHHhcCC
Confidence 344444444444444444444444444444433322 22333344455555543211 1111 112232222
Q ss_pred HHHHHHHHHHHHHHhhhccceee
Q 018202 156 KMLRMRQQFMISQVSFLYPVKIL 178 (359)
Q Consensus 156 ~~L~~rr~~lv~qL~~IyPI~~~ 178 (359)
-.+..-|+.|..++..+=-+..+
T Consensus 460 P~l~~lR~Ala~Di~~L~~~~~~ 482 (656)
T PRK06975 460 PQAVAVRKAIAQDIERLKAAPSA 482 (656)
T ss_pred cchHHHHHHHHHHHHHHhcCCcC
Confidence 23566677777777766544443
No 255
>PF10376 Mei5: Double-strand recombination repair protein ; InterPro: IPR018468 Mei5 is one of a pair of meiosis-specific proteins which facilitate the loading of Dmc1 on to Rad51 on DNA at double-strand breaks during recombination. Recombination is carried out by a large protein complex based around the two RecA homologues, Rad51 and Dmc1 []. This complex may play both a catalytic and a structural role in the interaction between homologous chromosomes during meiosis. Mei5 is seen to contain a coiled-coli region.
Probab=24.15 E-value=6.2e+02 Score=23.97 Aligned_cols=17 Identities=12% Similarity=0.435 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018202 48 LSQADDKKQTLQQKLQS 64 (359)
Q Consensus 48 iq~a~~~~~~L~~qI~~ 64 (359)
.+++..++..|+.||.+
T Consensus 133 ~~el~~ek~kL~~q~~e 149 (221)
T PF10376_consen 133 QQELEEEKRKLEKQVDE 149 (221)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 57777777777777766
No 256
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=23.82 E-value=9.8e+02 Score=26.19 Aligned_cols=15 Identities=33% Similarity=0.284 Sum_probs=8.1
Q ss_pred HHHHHhHHhHHHhhc
Q 018202 130 VARKRLQESNRLLAG 144 (359)
Q Consensus 130 ~a~~~Lqe~~~~L~~ 144 (359)
.|..-|+.++..|..
T Consensus 442 ~A~~~L~~AD~~La~ 456 (656)
T PRK06975 442 LALIALQNADARLAT 456 (656)
T ss_pred HHHHHHHHHHHHHHh
Confidence 445555655555543
No 257
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=23.78 E-value=5.2e+02 Score=22.95 Aligned_cols=13 Identities=8% Similarity=0.199 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 018202 55 KQTLQQKLQSLIQ 67 (359)
Q Consensus 55 ~~~L~~qI~~~le 67 (359)
++.+...++++-+
T Consensus 51 ~~~I~~~l~~Ae~ 63 (175)
T PRK14472 51 EKGIQSSIDRAHS 63 (175)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444433
No 258
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=23.65 E-value=9e+02 Score=25.66 Aligned_cols=84 Identities=25% Similarity=0.352 Sum_probs=38.5
Q ss_pred hhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------H-HhhHHHHHHHHHHHHHHHHHHHH
Q 018202 32 EDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAES--------------L-KRSNELEEMRERLEARRLLMEKM 96 (359)
Q Consensus 32 ~~~~~~l~rL~~L~~~iq~a~~~~~~L~~qI~~~le~~~~~--------------~-~~~~~l~~~~~rl~~~~~~~~~~ 96 (359)
.++...+.....|..-+..+......|+.++....+..-.. + ....++.+++..|+....-+..+
T Consensus 228 ~~L~~e~~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L 307 (522)
T PF05701_consen 228 EELKEELEAAKDLESKLAEASAELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSL 307 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444445555555566666665555521111 1 14445555555554444444444
Q ss_pred HHhhHHHHHHHHHHHHHHH
Q 018202 97 SMRSKVEKEDAKNQEERLS 115 (359)
Q Consensus 97 ~~~~r~~~~~~~~rre~L~ 115 (359)
+.....++.++.+-+.++.
T Consensus 308 ~~~vesL~~ELe~~K~el~ 326 (522)
T PF05701_consen 308 RASVESLRSELEKEKEELE 326 (522)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444333
No 259
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=23.64 E-value=5.8e+02 Score=23.49 Aligned_cols=45 Identities=24% Similarity=0.431 Sum_probs=25.8
Q ss_pred cHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 018202 43 SLSSALSQADD---KKQTLQQKLQSLIQVKAESLKRSNELEEMRERLE 87 (359)
Q Consensus 43 ~L~~~iq~a~~---~~~~L~~qI~~~le~~~~~~~~~~~l~~~~~rl~ 87 (359)
++.+++.+... ....|..+|+.+|.-........++...++.++.
T Consensus 73 ~~~~tl~~LE~~GFnV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~ 120 (190)
T PF05266_consen 73 SLMKTLSELEEHGFNVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIE 120 (190)
T ss_pred HHHHHHHHHHHcCCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34455555443 4566777777777766555545555554444443
No 260
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=23.48 E-value=4e+02 Score=28.88 Aligned_cols=17 Identities=29% Similarity=0.425 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018202 55 KQTLQQKLQSLIQVKAE 71 (359)
Q Consensus 55 ~~~L~~qI~~~le~~~~ 71 (359)
+++|++.|...|..-.+
T Consensus 3 ~RKLq~eIdr~lkKv~E 19 (575)
T KOG2150|consen 3 KRKLQQEIDRCLKKVDE 19 (575)
T ss_pred hhHHHHHHHHHHHHhhh
Confidence 45566666655554333
No 261
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=23.47 E-value=5.4e+02 Score=23.07 Aligned_cols=17 Identities=6% Similarity=0.167 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018202 55 KQTLQQKLQSLIQVKAE 71 (359)
Q Consensus 55 ~~~L~~qI~~~le~~~~ 71 (359)
+.-+=..|..+|+.|+.
T Consensus 28 ~kf~~ppI~~iLe~R~~ 44 (155)
T PRK06569 28 YKFITPKAEEIFNNRQT 44 (155)
T ss_pred HHHhHHHHHHHHHHHHH
Confidence 34445556666666554
No 262
>PLN02678 seryl-tRNA synthetase
Probab=23.04 E-value=5.9e+02 Score=26.72 Aligned_cols=21 Identities=5% Similarity=0.219 Sum_probs=10.2
Q ss_pred HHHHHHHHHHhcC-CCCCCcee
Q 018202 244 IAHVVSLIASYLE-VPLRYPLR 264 (359)
Q Consensus 244 vAhlv~lls~yL~-vpLpYpi~ 264 (359)
.-.++.+.-.+|. .-|||.+.
T Consensus 305 ~e~~l~~~~~i~~~L~lpyrvv 326 (448)
T PLN02678 305 HEEMLKNSEDFYQSLGIPYQVV 326 (448)
T ss_pred HHHHHHHHHHHHHHcCCCeEEE
Confidence 3334444433333 46667774
No 263
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=23.03 E-value=5.6e+02 Score=23.07 Aligned_cols=63 Identities=19% Similarity=0.206 Sum_probs=35.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHhHHhHH
Q 018202 75 RSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNR 140 (359)
Q Consensus 75 ~~~~l~~~~~rl~~~~~~~~~~~~~~r~~~~~~~~rre~L~~~ir~l~~~~~~l~~a~~~Lqe~~~ 140 (359)
+...+++...+|..++-.++-+..=.++..+.++++.|.....+ ..+|..++.+.+...++.+
T Consensus 57 ~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vNreL---kpl~~~cqKKEkEykeale 119 (159)
T PF04949_consen 57 QLGRVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVNREL---KPLGQSCQKKEKEYKEALE 119 (159)
T ss_pred HHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666666666666666666555444 4445555555444444433
No 264
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=22.97 E-value=1e+03 Score=26.07 Aligned_cols=25 Identities=12% Similarity=0.286 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018202 45 SSALSQADDKKQTLQQKLQSLIQVK 69 (359)
Q Consensus 45 ~~~iq~a~~~~~~L~~qI~~~le~~ 69 (359)
.+-++.+..+++.|+.++...++.+
T Consensus 86 q~E~~~L~kElE~L~~qlqaqv~~n 110 (617)
T PF15070_consen 86 QAEAEHLRKELESLEEQLQAQVENN 110 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445556666666666655543
No 265
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=22.93 E-value=4.6e+02 Score=22.19 Aligned_cols=31 Identities=19% Similarity=0.219 Sum_probs=23.6
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018202 40 RLWSLSSALSQADDKKQTLQQKLQSLIQVKA 70 (359)
Q Consensus 40 rL~~L~~~iq~a~~~~~~L~~qI~~~le~~~ 70 (359)
+|.+|..-|.+...+...|++++..+++.+.
T Consensus 9 ~l~~le~~l~~l~~el~~LK~~~~el~EEN~ 39 (110)
T PRK13169 9 ALDDLEQNLGVLLKELGALKKQLAELLEENT 39 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777778888888888888888777764
No 266
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=22.92 E-value=6.1e+02 Score=24.04 Aligned_cols=22 Identities=18% Similarity=0.199 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018202 101 KVEKEDAKNQEERLSMEVRSLL 122 (359)
Q Consensus 101 r~~~~~~~~rre~L~~~ir~l~ 122 (359)
..+...+-+.||+.+.+...+.
T Consensus 39 ~~Ll~~a~~ERDEAr~qlq~Ll 60 (214)
T PF07795_consen 39 KDLLKKAYQERDEAREQLQKLL 60 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455666666655444
No 267
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=22.91 E-value=6.3e+02 Score=23.60 Aligned_cols=71 Identities=15% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHhHH
Q 018202 63 QSLIQVKAESLK-RSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQE 137 (359)
Q Consensus 63 ~~~le~~~~~~~-~~~~l~~~~~rl~~~~~~~~~~~~~~r~~~~~~~~rre~L~~~ir~l~~~~~~l~~a~~~Lqe 137 (359)
.+.+..++..++ ...+++.+.++. +.+.+..-..++.++..+.|.++|.....++......+...-.++++
T Consensus 73 s~a~~~~ks~~qeLe~~L~~~~qk~----~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e 144 (203)
T KOG3433|consen 73 SEAICDRKSVLQELESQLATGSQKK----ATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQE 144 (203)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhH----hHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 268
>PRK11166 chemotaxis regulator CheZ; Provisional
Probab=22.77 E-value=6.6e+02 Score=23.77 Aligned_cols=15 Identities=20% Similarity=0.496 Sum_probs=10.8
Q ss_pred CChhHHHHHHhHHHH
Q 018202 229 TDKKEVQRSATALGY 243 (359)
Q Consensus 229 ~~~~~~~~isaALGy 243 (359)
.+.++++.+-++|||
T Consensus 200 ~~Qd~VDdLL~SLGF 214 (214)
T PRK11166 200 ASQDQVDDLLDSLGF 214 (214)
T ss_pred CCHHHHHHHHHhcCC
Confidence 356677778888885
No 269
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=22.77 E-value=76 Score=27.06 Aligned_cols=81 Identities=19% Similarity=0.232 Sum_probs=17.1
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 018202 38 LARLWSLSSALSQADDKKQTLQQKLQSLIQVKA-ESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSM 116 (359)
Q Consensus 38 l~rL~~L~~~iq~a~~~~~~L~~qI~~~le~~~-~~~~~~~~l~~~~~rl~~~~~~~~~~~~~~r~~~~~~~~rre~L~~ 116 (359)
..|=.+|+.-.+|+..-...|.+++-++|-..- ++......+.-+.+.++..+.-+..++.++......+....+++..
T Consensus 22 ~~~~~~Le~L~~dL~~~~~~L~~~Li~lIN~dY~dFv~Ls~~L~g~~~~i~~l~~~L~~~~~~v~~~~~~l~~~~~~i~~ 101 (133)
T PF06148_consen 22 NRRYVSLEDLRKDLRSYSKELKNELIELINDDYADFVSLSTNLVGMDEKIEELRKPLSQFREEVESVRDELDNTQEEIED 101 (133)
T ss_dssp ----------------------------------------------------HHHHHHHHHHHHHHHHHS-STTHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777777777777777776543 4566777777777777666666666666665555555555555555
Q ss_pred HH
Q 018202 117 EV 118 (359)
Q Consensus 117 ~i 118 (359)
.+
T Consensus 102 ~l 103 (133)
T PF06148_consen 102 KL 103 (133)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 270
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=22.76 E-value=1.2e+03 Score=26.75 Aligned_cols=118 Identities=19% Similarity=0.232 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 018202 44 LSSALSQADDKKQTLQQKLQSLIQVKA--------ESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLS 115 (359)
Q Consensus 44 L~~~iq~a~~~~~~L~~qI~~~le~~~--------~~~~~~~~l~~~~~rl~~~~~~~~~~~~~~r~~~~~~~~rre~L~ 115 (359)
|......|......+.+++=.+-++-+ ++.+..++-.++.++| ++.++.+.++..+.+++++....++.
T Consensus 939 L~~~y~qA~~~q~q~~qq~FAL~dv~qRr~HF~Y~ds~~~l~e~sdLnekL---r~rL~q~eaeR~~~reqlrQ~Q~Q~s 1015 (1480)
T COG3096 939 LKEDYAQAQQMQRQARQQAFALTEVVQRRAHFSYSDSAEMLSENSDLNEKL---RQRLEQAEAERTRAREQLRQHQAQLS 1015 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhhhcccchhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhchhHHHHHHHhHHhHHHhhc----------ccccchHHHHHHHHHHHHHH
Q 018202 116 MEVRSLLVAGTALSVARKRLQESNRLLAG----------EKGYGHLQKLQKMLRMRQQF 164 (359)
Q Consensus 116 ~~ir~l~~~~~~l~~a~~~Lqe~~~~L~~----------e~~~~~L~~lq~~L~~rr~~ 164 (359)
.=.+-+...-....+...-|+|....+.. |+.+.+-..+...|...|.+
T Consensus 1016 qYnqvl~~LksS~~~K~~~l~El~qEl~d~GV~AD~gAeeRA~~RRDELh~~Lst~RsR 1074 (1480)
T COG3096 1016 QYNQVLASLKSSYDTKKELLNELQQELQDIGVRADSGAEERARIRRDELHAQLSTNRSR 1074 (1480)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCcCcchHHHHHHHHHHHHHHHhccHhH
No 271
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=22.58 E-value=3.8e+02 Score=28.38 Aligned_cols=10 Identities=10% Similarity=0.029 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q 018202 109 NQEERLSMEV 118 (359)
Q Consensus 109 ~rre~L~~~i 118 (359)
++++++..+|
T Consensus 97 aq~~dle~KI 106 (475)
T PRK13729 97 KQRGDDQRRI 106 (475)
T ss_pred hhhhhHHHHH
Confidence 4444444444
No 272
>PRK07521 flgK flagellar hook-associated protein FlgK; Validated
Probab=22.55 E-value=9e+02 Score=25.28 Aligned_cols=84 Identities=8% Similarity=0.092 Sum_probs=43.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHhHHhHHHhhcccccchHHHHHHHHHHHHHHHHHHHh
Q 018202 91 LLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAGEKGYGHLQKLQKMLRMRQQFMISQVS 170 (359)
Q Consensus 91 ~~~~~~~~~~r~~~~~~~~rre~L~~~ir~l~~~~~~l~~a~~~Lqe~~~~L~~e~~~~~L~~lq~~L~~rr~~lv~qL~ 170 (359)
..++.+..+.+....+++..+.++..+|...... +...-++|.+.+..+......+ .-...|.-.|-.++.+|+
T Consensus 129 ~~a~~L~~~~n~~~~~L~~~~~~~~~~i~~~V~~---iN~l~~~Ia~LN~~I~~~~~~g---~~~ndL~DqRD~ll~~LS 202 (483)
T PRK07521 129 DAAQDLANSLNDASDAVQSARADADAEIADSVDT---LNDLLAQFEDANNAVVSGTATG---RDASDALDQRDKLLKQIS 202 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhccCC---CCchhhHHHHHHHHHHHH
Confidence 3334444445555555555555555555322222 1122233333333322111101 113467888999999999
Q ss_pred hhccceeeCC
Q 018202 171 FLYPVKILVG 180 (359)
Q Consensus 171 ~IyPI~~~~~ 180 (359)
.+-+|+....
T Consensus 203 ~~v~i~v~~~ 212 (483)
T PRK07521 203 QIVGVTTVTR 212 (483)
T ss_pred hhcCeEEEEe
Confidence 9999997753
No 273
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=22.47 E-value=4.3e+02 Score=21.49 Aligned_cols=13 Identities=8% Similarity=0.077 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 018202 49 SQADDKKQTLQQK 61 (359)
Q Consensus 49 q~a~~~~~~L~~q 61 (359)
+.....+..|+.+
T Consensus 16 ~~l~~~~~~l~~~ 28 (105)
T cd00632 16 QAYIVQRQKVEAQ 28 (105)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 274
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=22.43 E-value=1.1e+03 Score=26.05 Aligned_cols=38 Identities=24% Similarity=0.348 Sum_probs=29.5
Q ss_pred hhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018202 31 WEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQV 68 (359)
Q Consensus 31 ~~~~~~~l~rL~~L~~~iq~a~~~~~~L~~qI~~~le~ 68 (359)
.+++..+|.-+=+++..|+.+..+.+.++++...-++.
T Consensus 130 lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~ 167 (629)
T KOG0963|consen 130 LEEVNNELADLKTQQVTVRNLKERLRKLEQLLEIFIEN 167 (629)
T ss_pred HHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 45666777777888888888888888888887777763
No 275
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=22.34 E-value=7.3e+02 Score=25.58 Aligned_cols=77 Identities=12% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 018202 38 LARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSME 117 (359)
Q Consensus 38 l~rL~~L~~~iq~a~~~~~~L~~qI~~~le~~~~~~~~~~~l~~~~~rl~~~~~~~~~~~~~~r~~~~~~~~rre~L~~~ 117 (359)
+-+|..|+.--.++..+.+.|..+.|.+=..-.......++.+++.++....+..+.. .....++++.+..++-.+
T Consensus 27 vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~ 102 (425)
T PRK05431 27 VDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKA----LEAELDELEAELEELLLR 102 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHh
Q ss_pred H
Q 018202 118 V 118 (359)
Q Consensus 118 i 118 (359)
|
T Consensus 103 i 103 (425)
T PRK05431 103 I 103 (425)
T ss_pred C
No 276
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=22.33 E-value=7.1e+02 Score=23.99 Aligned_cols=24 Identities=13% Similarity=0.282 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018202 44 LSSALSQADDKKQTLQQKLQSLIQ 67 (359)
Q Consensus 44 L~~~iq~a~~~~~~L~~qI~~~le 67 (359)
++.-+..+..+...++++++...+
T Consensus 140 ~~~~i~~l~~~~~~~~~~~~~~~~ 163 (301)
T PF14362_consen 140 LDAEIAALQAEIDQLEKEIDRAQQ 163 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444443
No 277
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=22.24 E-value=9.6e+02 Score=25.48 Aligned_cols=9 Identities=22% Similarity=0.383 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 018202 245 AHVVSLIAS 253 (359)
Q Consensus 245 Ahlv~lls~ 253 (359)
+|+-.+=.|
T Consensus 282 ~H~~svr~H 290 (475)
T PRK10361 282 EHIASVRNH 290 (475)
T ss_pred HHHHHHHHH
Confidence 344444333
No 278
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=22.16 E-value=7.9e+02 Score=24.50 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018202 47 ALSQADDKKQTLQQKLQSLIQVKA 70 (359)
Q Consensus 47 ~iq~a~~~~~~L~~qI~~~le~~~ 70 (359)
-+.|+..++..|+.|=..-|++..
T Consensus 317 ~~ed~e~kkrqlerqekqeleqma 340 (445)
T KOG2891|consen 317 HLEDAEIKKRQLERQEKQELEQMA 340 (445)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 367888888888887666666544
No 279
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=22.05 E-value=4.5e+02 Score=21.62 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=17.1
Q ss_pred hHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018202 34 YDQELARLWSLSSALSQADDKKQTLQQKLQSLIQV 68 (359)
Q Consensus 34 ~~~~l~rL~~L~~~iq~a~~~~~~L~~qI~~~le~ 68 (359)
++..++.+..+..-++.....+..|+.+++..--+
T Consensus 5 ~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v 39 (110)
T TIGR02338 5 VQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKA 39 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555555555555555444433
No 280
>PHA01750 hypothetical protein
Probab=21.90 E-value=1.4e+02 Score=23.30 Aligned_cols=9 Identities=11% Similarity=0.390 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 018202 55 KQTLQQKLQ 63 (359)
Q Consensus 55 ~~~L~~qI~ 63 (359)
..+|..+|+
T Consensus 44 LdNL~~ei~ 52 (75)
T PHA01750 44 LDNLKTEIE 52 (75)
T ss_pred HHHHHHHHH
Confidence 334444433
No 281
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=21.62 E-value=7.6e+02 Score=25.42 Aligned_cols=24 Identities=21% Similarity=0.205 Sum_probs=9.6
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHH
Q 018202 40 RLWSLSSALSQADDKKQTLQQKLQ 63 (359)
Q Consensus 40 rL~~L~~~iq~a~~~~~~L~~qI~ 63 (359)
.|..|+.--.++..+.+.|..+.|
T Consensus 31 ~i~~ld~~~r~~~~~~~~l~~erN 54 (418)
T TIGR00414 31 KLIALDDERKKLLSEIEELQAKRN 54 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344443444444444443333
No 282
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=21.53 E-value=5.1e+02 Score=22.02 Aligned_cols=20 Identities=30% Similarity=0.421 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 018202 48 LSQADDKKQTLQQKLQSLIQ 67 (359)
Q Consensus 48 iq~a~~~~~~L~~qI~~~le 67 (359)
|++.......+..+++.+..
T Consensus 8 l~~l~~~~~~l~~~~~~l~~ 27 (140)
T PRK03947 8 LEELAAQLQALQAQIEALQQ 27 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444333
No 283
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=21.34 E-value=5.4e+02 Score=25.51 Aligned_cols=23 Identities=13% Similarity=0.160 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 018202 46 SALSQADDKKQTLQQKLQSLIQV 68 (359)
Q Consensus 46 ~~iq~a~~~~~~L~~qI~~~le~ 68 (359)
.+|.+.....+.|.+=++++...
T Consensus 18 Eti~qi~~aL~~L~~v~~diF~r 40 (297)
T PF11945_consen 18 ETILQIADALEYLDKVSNDIFSR 40 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555565555555553
No 284
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.31 E-value=1.1e+03 Score=25.83 Aligned_cols=12 Identities=33% Similarity=0.678 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 018202 53 DKKQTLQQKLQS 64 (359)
Q Consensus 53 ~~~~~L~~qI~~ 64 (359)
+++..|++++++
T Consensus 43 eeK~~Lkqq~eE 54 (772)
T KOG0999|consen 43 EEKEDLKQQLEE 54 (772)
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 285
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=21.22 E-value=1e+03 Score=25.43 Aligned_cols=133 Identities=17% Similarity=0.220 Sum_probs=0.0
Q ss_pred hhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 018202 32 EDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQE 111 (359)
Q Consensus 32 ~~~~~~l~rL~~L~~~iq~a~~~~~~L~~qI~~~le~~~~~~~~~~~l~~~~~rl~~~~~~~~~~~~~~r~~~~~~~~rr 111 (359)
+.|..+=.-|..+...|..+....+.+...++.+++... ++..++.+++++-+..++.+-..+-.--.+...++++-
T Consensus 98 ~~f~~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~---~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l 174 (569)
T PRK04778 98 FRFRKAKHEINEIESLLDLIEEDIEQILEELQELLESEE---KNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQL 174 (569)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHH
Q ss_pred HHHHHHH---HHHHHhchhHHHH--HHHhHHhHHHhhcccccchHHHHHHHHHHHHHHHHHHHhhh
Q 018202 112 ERLSMEV---RSLLVAGTALSVA--RKRLQESNRLLAGEKGYGHLQKLQKMLRMRQQFMISQVSFL 172 (359)
Q Consensus 112 e~L~~~i---r~l~~~~~~l~~a--~~~Lqe~~~~L~~e~~~~~L~~lq~~L~~rr~~lv~qL~~I 172 (359)
+++.... ..+..+|.-+.+. -.++++.-..|.. .+..+-..+..-+..+=.||..|
T Consensus 175 ~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~-----~~~~iP~l~~~~~~~~P~ql~el 235 (569)
T PRK04778 175 ENLEEEFSQFVELTESGDYVEAREILDQLEEELAALEQ-----IMEEIPELLKELQTELPDQLQEL 235 (569)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhhHHHHHH
No 286
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=21.22 E-value=5.6e+02 Score=22.36 Aligned_cols=8 Identities=13% Similarity=0.368 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 018202 62 LQSLIQVK 69 (359)
Q Consensus 62 I~~~le~~ 69 (359)
|..+++.|
T Consensus 47 i~~~l~~R 54 (156)
T CHL00118 47 LLKVLDER 54 (156)
T ss_pred HHHHHHHH
Confidence 33344433
No 287
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=20.74 E-value=1e+03 Score=25.23 Aligned_cols=12 Identities=25% Similarity=0.277 Sum_probs=5.8
Q ss_pred HHhHHhHHHhhc
Q 018202 133 KRLQESNRLLAG 144 (359)
Q Consensus 133 ~~Lqe~~~~L~~ 144 (359)
-+|.|+.+..+.
T Consensus 434 vrl~eaeea~~~ 445 (488)
T PF06548_consen 434 VRLREAEEAASV 445 (488)
T ss_pred HHHHhHHHHHHH
Confidence 455555444433
No 288
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=20.70 E-value=8.4e+02 Score=24.25 Aligned_cols=39 Identities=28% Similarity=0.471 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 018202 48 LSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERL 86 (359)
Q Consensus 48 iq~a~~~~~~L~~qI~~~le~~~~~~~~~~~l~~~~~rl 86 (359)
+++...+...|...++.+.+.+.+....++++.+.++.+
T Consensus 8 ~~E~e~K~~~lk~~~~e~~ekR~El~~~~~~~~ekRdel 46 (294)
T COG1340 8 LDELELKRKQLKEEIEELKEKRDELRKEASELAEKRDEL 46 (294)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666667777777776655555555555555544
No 289
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=20.54 E-value=5.8e+02 Score=22.29 Aligned_cols=32 Identities=19% Similarity=0.255 Sum_probs=17.6
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018202 38 LARLWSLSSALSQADDKKQTLQQKLQSLIQVK 69 (359)
Q Consensus 38 l~rL~~L~~~iq~a~~~~~~L~~qI~~~le~~ 69 (359)
..|.--+..-++++......++.+|.++=...
T Consensus 13 ~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~ 44 (143)
T PF12718_consen 13 QDRAEELEAKVKQLEQENEQKEQEITSLQKKN 44 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455556666666666666666554443
No 290
>PRK12714 flgK flagellar hook-associated protein FlgK; Provisional
Probab=20.47 E-value=1.1e+03 Score=25.60 Aligned_cols=81 Identities=7% Similarity=-0.000 Sum_probs=43.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHhHHhHHHhhcccccchHHHHHHHHHHHHHHHHHHHh
Q 018202 91 LLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAGEKGYGHLQKLQKMLRMRQQFMISQVS 170 (359)
Q Consensus 91 ~~~~~~~~~~r~~~~~~~~rre~L~~~ir~l~~~~~~l~~a~~~Lqe~~~~L~~e~~~~~L~~lq~~L~~rr~~lv~qL~ 170 (359)
..++.+..+.+.....+...++.+..+|......-. .--++|.+.+..+....+ + -...|.-.|-.++.||+
T Consensus 134 ~~A~~La~~f~~~~~~L~~~~~~~n~~i~~~V~~IN---~l~~~IA~LN~~I~~~~~-~----~~ndLlDqRD~ll~eLS 205 (624)
T PRK12714 134 DSGNSLATRFKQLNGQMDSLSNEVNSGLTSSVDEVN---RLTQQIAKINGTIGSSAQ-N----AAPDLLDQRDALVSKLV 205 (624)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcC-C----CchhhHHHHHHHHHHHH
Confidence 334444445555555555555555555533322222 222333333333221101 0 13467888999999999
Q ss_pred hhccceeeC
Q 018202 171 FLYPVKILV 179 (359)
Q Consensus 171 ~IyPI~~~~ 179 (359)
.+-+|+.+.
T Consensus 206 ~~v~v~v~~ 214 (624)
T PRK12714 206 GYTGGTAVI 214 (624)
T ss_pred hhcCeEEEE
Confidence 999998774
No 291
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=20.32 E-value=1.4e+03 Score=26.82 Aligned_cols=103 Identities=20% Similarity=0.221 Sum_probs=0.0
Q ss_pred hhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 018202 32 EDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQE 111 (359)
Q Consensus 32 ~~~~~~l~rL~~L~~~iq~a~~~~~~L~~qI~~~le~~~~~~~~~~~l~~~~~rl~~~~~~~~~~~~~~r~~~~~~~~rr 111 (359)
+.+++.+.+-..+.+-+++.......+..+++.+.....+.-+...++. ...+++......+.++.....
T Consensus 395 ~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~----------~d~~~l~~~~~~~~~~~~e~n 464 (1141)
T KOG0018|consen 395 DTLDHELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELK----------HDLDSLESLVSSAEEEPYELN 464 (1141)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------hcHHHHHHHHhhhhhhHHHHH
Q ss_pred HHHHHHHHHHHHhchhHH--HHHHHhHHhHHHhhc
Q 018202 112 ERLSMEVRSLLVAGTALS--VARKRLQESNRLLAG 144 (359)
Q Consensus 112 e~L~~~ir~l~~~~~~l~--~a~~~Lqe~~~~L~~ 144 (359)
++|..-...+..+..... ...++++++-..|..
T Consensus 465 ~eL~~~~~ql~das~dr~e~sR~~~~~eave~lKr 499 (1141)
T KOG0018|consen 465 EELVEVLDQLLDASADRHEGSRRSRKQEAVEALKR 499 (1141)
T ss_pred HHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHHHH
No 292
>PRK11519 tyrosine kinase; Provisional
Probab=20.15 E-value=1.2e+03 Score=25.73 Aligned_cols=21 Identities=5% Similarity=0.170 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCC
Q 018202 315 AVFLLNKDIEQLLNYIGVKSL 335 (359)
Q Consensus 315 aV~LLNknI~qL~~~~Gl~~~ 335 (359)
|=.-+.-|++..+...|-+++
T Consensus 539 GKTt~a~nLA~~la~~g~rvL 559 (719)
T PRK11519 539 GKTFVCANLAAVISQTNKRVL 559 (719)
T ss_pred CHHHHHHHHHHHHHhCCCcEE
Confidence 334455666666666665543
No 293
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=20.15 E-value=8.8e+02 Score=24.25 Aligned_cols=64 Identities=17% Similarity=0.170 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHH----HHHH---H-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 018202 55 KQTLQQKLQSLIQVKAESLKRSNELEE----MRER---L-EARRLLMEKMSMRSKVEKEDAKNQEERLSMEV 118 (359)
Q Consensus 55 ~~~L~~qI~~~le~~~~~~~~~~~l~~----~~~r---l-~~~~~~~~~~~~~~r~~~~~~~~rre~L~~~i 118 (359)
.+.|+.++..+-+.+.......+.+.. .+++ | ...+..+.....++..+.+++.++.++...+-
T Consensus 162 le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQ 233 (306)
T PF04849_consen 162 LEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQ 233 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 355666666665555544434444442 2222 1 22233444445555556666666666555543
Done!