Query 018202
Match_columns 359
No_of_seqs 173 out of 239
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 11:32:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018202.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018202hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ddp_A Beclin-1; ECD, autophag 98.8 2.5E-08 8.6E-13 91.3 9.6 97 209-330 42-143 (210)
2 3vp7_A Vacuolar protein sortin 98.5 1.8E-07 6.3E-12 86.1 8.4 109 209-329 16-134 (220)
3 2v4h_A NF-kappa-B essential mo 87.9 10 0.00034 31.0 13.4 86 24-123 19-104 (110)
4 2jee_A YIIU; FTSZ, septum, coi 81.2 17 0.00058 28.1 11.4 25 44-68 11-35 (81)
5 3vkg_A Dynein heavy chain, cyt 80.1 50 0.0017 41.0 18.2 13 296-308 2182-2194(3245)
6 2fzt_A Hypothetical protein TM 78.6 20 0.00068 27.3 9.3 67 56-128 5-77 (79)
7 2xzr_A Immunoglobulin-binding 78.2 18 0.00061 29.0 9.3 12 107-118 81-92 (114)
8 3mq9_A Bone marrow stromal ant 76.7 44 0.0015 32.7 14.2 57 51-107 371-427 (471)
9 3vkg_A Dynein heavy chain, cyt 76.3 37 0.0013 42.1 15.6 43 127-169 2064-2107(3245)
10 3na7_A HP0958; flagellar bioge 75.9 47 0.0016 30.3 19.6 28 38-65 10-37 (256)
11 3ol1_A Vimentin; structural ge 75.3 32 0.0011 28.0 14.3 37 31-70 15-51 (119)
12 2dfs_A Myosin-5A; myosin-V, in 75.0 58 0.002 36.1 15.8 42 77-118 984-1025(1080)
13 3oja_B Anopheles plasmodium-re 71.2 38 0.0013 34.0 12.4 23 44-66 461-483 (597)
14 4abx_A DNA repair protein RECN 63.8 34 0.0012 29.4 8.9 94 25-118 28-131 (175)
15 3ghg_A Fibrinogen alpha chain; 61.1 62 0.0021 33.2 11.2 19 47-65 58-76 (562)
16 3jsv_C NF-kappa-B essential mo 60.7 61 0.0021 25.7 10.6 33 96-128 55-87 (94)
17 2v71_A Nuclear distribution pr 54.8 1.1E+02 0.0039 27.0 16.7 92 40-131 25-124 (189)
18 2ocy_A RAB guanine nucleotide 54.4 1E+02 0.0036 26.4 16.5 83 36-122 10-92 (154)
19 2d4y_A HAP1, flagellar HOOK-as 54.1 1.7E+02 0.0058 28.8 13.9 25 155-179 131-155 (463)
20 3cvf_A Homer-3, homer protein 53.5 73 0.0025 24.4 8.5 23 44-66 11-33 (79)
21 3na7_A HP0958; flagellar bioge 53.4 1.3E+02 0.0044 27.2 18.1 12 156-167 160-171 (256)
22 1x79_B RAB GTPase binding effe 51.8 96 0.0033 25.2 13.0 80 30-118 7-86 (112)
23 1deq_A Fibrinogen (alpha chain 50.1 1.9E+02 0.0067 28.3 12.7 30 91-120 102-131 (390)
24 1ik9_A DNA repair protein XRCC 49.7 1.4E+02 0.0049 26.6 12.9 24 44-67 137-160 (213)
25 2zqm_A Prefoldin beta subunit 47.0 1E+02 0.0035 24.1 12.7 37 33-69 7-43 (117)
26 1deq_A Fibrinogen (alpha chain 46.6 2.2E+02 0.0075 27.9 13.2 38 33-70 64-101 (390)
27 1cii_A Colicin IA; bacteriocin 45.4 2.6E+02 0.0089 28.3 13.9 7 30-36 350-356 (602)
28 3swk_A Vimentin; cytoskeleton, 45.0 1E+02 0.0035 23.6 11.4 25 44-68 5-29 (86)
29 2eqb_B RAB guanine nucleotide 43.3 1.2E+02 0.0042 24.0 13.7 25 94-118 68-92 (97)
30 2fxo_A Myosin heavy chain, car 42.3 1.4E+02 0.0047 24.4 16.3 25 44-68 25-49 (129)
31 3iv1_A Tumor susceptibility ge 41.1 1.2E+02 0.004 23.2 9.9 59 56-114 10-72 (78)
32 2w83_C C-JUN-amino-terminal ki 41.1 1.2E+02 0.004 23.1 9.6 55 57-125 6-60 (77)
33 1f5n_A Interferon-induced guan 40.8 3.2E+02 0.011 28.1 14.6 11 132-142 551-561 (592)
34 3ibp_A Chromosome partition pr 40.8 2.4E+02 0.0083 26.7 12.2 37 89-126 71-107 (302)
35 1wt6_A Myotonin-protein kinase 38.1 1.4E+02 0.0046 23.0 8.6 24 42-65 13-36 (81)
36 4abx_A DNA repair protein RECN 36.7 1.9E+02 0.0067 24.4 11.9 25 43-67 84-108 (175)
37 3i00_A HIP-I, huntingtin-inter 36.0 1.8E+02 0.0061 23.8 11.3 24 46-69 15-38 (120)
38 3plt_A Sphingolipid long chain 34.2 2.7E+02 0.0094 25.4 12.4 35 31-65 89-123 (234)
39 1m1j_B Fibrinogen beta chain; 32.6 3.9E+02 0.013 26.7 15.3 8 171-178 228-235 (464)
40 2e7s_A RAB guanine nucleotide 31.9 1.2E+02 0.004 25.5 6.7 10 109-118 74-83 (135)
41 1m1j_B Fibrinogen beta chain; 31.4 4.1E+02 0.014 26.6 15.0 11 48-58 102-112 (464)
42 4ad8_A DNA repair protein RECN 30.5 4E+02 0.014 26.2 15.3 35 31-65 185-219 (517)
43 1fxk_A Prefoldin; archaeal pro 30.2 1.8E+02 0.0063 22.2 12.3 36 34-69 3-38 (107)
44 2e7s_A RAB guanine nucleotide 30.2 1.8E+02 0.0063 24.3 7.6 23 100-122 58-80 (135)
45 3k4t_A Virion-associated prote 29.0 1.3E+02 0.0045 23.6 6.0 32 39-70 2-33 (95)
46 3oja_A Leucine-rich immune mol 28.3 4.1E+02 0.014 25.7 11.8 13 32-44 324-336 (487)
47 3o0z_A RHO-associated protein 27.3 3.1E+02 0.01 23.8 17.2 60 109-169 97-156 (168)
48 2v66_B Nuclear distribution pr 27.3 2.5E+02 0.0085 22.7 12.7 21 48-68 5-25 (111)
49 1m1j_C Fibrinogen gamma chain; 26.3 3.9E+02 0.013 26.3 10.5 9 170-178 164-172 (409)
50 3bas_A Myosin heavy chain, str 26.3 2.2E+02 0.0074 21.7 10.4 27 44-70 26-52 (89)
51 3tnu_A Keratin, type I cytoske 26.1 2.6E+02 0.009 22.6 13.1 21 48-68 40-60 (131)
52 3a7p_A Autophagy protein 16; c 26.1 3.1E+02 0.011 23.4 10.4 100 43-142 25-129 (152)
53 2dq0_A Seryl-tRNA synthetase; 26.0 2.8E+02 0.0095 27.5 9.5 23 47-69 32-54 (455)
54 3tul_A Cell invasion protein S 25.4 3.2E+02 0.011 23.3 9.3 16 49-64 55-70 (158)
55 3cve_A Homer protein homolog 1 25.4 2.1E+02 0.0073 21.4 9.7 25 43-67 4-28 (72)
56 3tul_A Cell invasion protein S 24.6 3.3E+02 0.011 23.2 11.9 80 46-126 20-100 (158)
57 2v71_A Nuclear distribution pr 24.3 3.7E+02 0.013 23.7 15.3 25 100-124 107-131 (189)
58 2wq1_A General control protein 24.0 1.3E+02 0.0046 19.2 4.2 16 57-72 4-19 (33)
59 3f6n_A Virion-associated prote 23.3 2.3E+02 0.0078 23.4 6.7 33 39-71 2-34 (129)
60 3c3g_A Alpha/beta peptide with 23.0 1.4E+02 0.0049 19.0 4.2 15 57-71 4-18 (33)
61 3s4r_A Vimentin; alpha-helix, 22.9 2.6E+02 0.009 21.5 11.2 26 40-65 17-42 (93)
62 2bni_A General control protein 22.8 1.4E+02 0.0049 19.2 4.2 16 57-72 5-20 (34)
63 2v66_B Nuclear distribution pr 22.6 3.1E+02 0.01 22.2 14.8 20 105-124 45-64 (111)
64 2jee_A YIIU; FTSZ, septum, coi 22.5 2.6E+02 0.009 21.4 10.5 34 53-86 6-39 (81)
65 2ocy_A RAB guanine nucleotide 22.3 3.6E+02 0.012 22.9 15.6 18 101-118 78-95 (154)
66 2fxo_A Myosin heavy chain, car 22.3 3.1E+02 0.011 22.2 17.2 20 48-67 36-55 (129)
67 3tnu_B Keratin, type II cytosk 21.8 3.2E+02 0.011 22.0 13.8 20 48-67 38-57 (129)
68 3qne_A Seryl-tRNA synthetase, 21.7 3.4E+02 0.012 27.3 9.1 23 47-69 34-56 (485)
69 3oja_A Leucine-rich immune mol 21.1 5.6E+02 0.019 24.7 12.5 43 93-138 433-475 (487)
70 2zdi_C Prefoldin subunit alpha 20.5 2.1E+02 0.0071 23.7 6.3 25 100-124 96-120 (151)
71 1wle_A Seryl-tRNA synthetase; 20.2 6.6E+02 0.023 25.1 12.1 25 46-70 70-94 (501)
No 1
>4ddp_A Beclin-1; ECD, autophagy, membrane binding, membrane protein; 1.55A {Homo sapiens}
Probab=98.76 E-value=2.5e-08 Score=91.28 Aligned_cols=97 Identities=23% Similarity=0.295 Sum_probs=78.2
Q ss_pred ceEEeccccCCCcccccccCCChhHHHHHHhHHHHHHHHHHHHHHhcCCCC-CCceeecCCcceeecCCCCCCCCCcccc
Q 018202 209 SLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPL-RYPLRLGGSHTYINDYAPSIEPTSDLSS 287 (359)
Q Consensus 209 ~~tI~Gl~LP~~~~~~~~~f~~~~~~~~isaALGyvAhlv~lls~yL~vpL-pYpi~~~gSrSyI~D~i~~~~~ss~~~~ 287 (359)
-=||.|+.|.-.+.. . -+-.+|+||+|++|.|+..||..+++.+ +|.+.|+||.|+|.+...
T Consensus 42 fgtINglRLGrlp~~----~---V~W~EINAAwGq~~LLL~tla~~l~~~f~~y~L~P~GS~S~I~~~~~---------- 104 (210)
T 4ddp_A 42 FGTINNFRLGRLPSV----P---VEWNEINAAWGQTVLLLHALANKMGLKFQRYRLVPYGNHSYLESLTD---------- 104 (210)
T ss_dssp EEEETTEECCCBTTB----C---CCHHHHHHHHHHHHHHHHHHHHHHTCCCSSEEEECCGGGCEEEESSC----------
T ss_pred ceeEcccccCCCCCC----C---CCHHHHHHHHHHHHHHHHHHHHHcCCCccceeEEecCCcceeeEecC----------
Confidence 457999988776421 1 1223699999999999999999999999 799999999999987642
Q ss_pred cccccCCCCCcccCcccCCCc----hhhHHHHHHHHHHHHHHHHHhc
Q 018202 288 NIALSTNTKPAEFPLFLEGQD----ATRAAYAVFLLNKDIEQLLNYI 330 (359)
Q Consensus 288 ~~~~~~~~~~r~fPLy~~~~d----~~~F~yaV~LLNknI~qL~~~~ 330 (359)
....||||..+.- ..+|+-|+--+-.-+.|++...
T Consensus 105 --------~~~~l~Ly~sg~~~~f~~~kFD~Am~afL~cl~q~~~~~ 143 (210)
T 4ddp_A 105 --------KSKELPLYCSGGLRFFWDNKFDHAMVAFLDCVQQFKEEV 143 (210)
T ss_dssp --------TTCCEESCCCSSCGGGCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred --------CCeEEeceeCCCccccccccccHHHHHHHHHHHHHHHHH
Confidence 2357999987642 2599999999999999998776
No 2
>3vp7_A Vacuolar protein sorting-associated protein 30; targeting, PI3-kinase complex I, PRE-autophagosomal structur protein transport; 2.30A {Saccharomyces cerevisiae}
Probab=98.53 E-value=1.8e-07 Score=86.07 Aligned_cols=109 Identities=20% Similarity=0.231 Sum_probs=74.8
Q ss_pred ceEEeccccCCCcccccccCCChhHHHHHHhHHHHHHHHHHHHHHhcCCCC-CCceeecCCcceeecCCC-CCCCCCccc
Q 018202 209 SLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPL-RYPLRLGGSHTYINDYAP-SIEPTSDLS 286 (359)
Q Consensus 209 ~~tI~Gl~LP~~~~~~~~~f~~~~~~~~isaALGyvAhlv~lls~yL~vpL-pYpi~~~gSrSyI~D~i~-~~~~ss~~~ 286 (359)
-=||.|+.|.-.+... -+-.+|+||+|++|.|+..||..|++.+ .|.+.|+||.|+|.+... ..+- .+.
T Consensus 16 fgTINglRLGrl~~~~-------V~W~EINAAwGq~~LLL~tla~kl~~~f~~Y~L~PmGS~S~I~~~~~~~~~~-~~~- 86 (220)
T 3vp7_A 16 FATINGLRLGSIPESV-------VPWKEINAALGQLILLLATINKNLKINLVDYELQPMGSFSKIKKRMVNSVEY-NNS- 86 (220)
T ss_dssp EEEETTEEECCBTTBC-------CCHHHHHHHHHHHHHHHHHHHHHTTCCCSSEEEECCGGGCEEEEEC-----------
T ss_pred ceeEcccccCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHhCCCcccceEEeCCCcceEeecccccccc-ccc-
Confidence 4579999888664211 1223599999999999999999999999 599999999999998421 1000 000
Q ss_pred ccccccCCCCCcccCcccCCC--------chhhHHHHHHHHHHHHHHHHHh
Q 018202 287 SNIALSTNTKPAEFPLFLEGQ--------DATRAAYAVFLLNKDIEQLLNY 329 (359)
Q Consensus 287 ~~~~~~~~~~~r~fPLy~~~~--------d~~~F~yaV~LLNknI~qL~~~ 329 (359)
+. ........||||..+. -..+|+-|+--+=.-|.|+...
T Consensus 87 ~~---~~~~~~~~l~Ly~s~~~~lg~~f~~~~kFD~aMvafL~cl~ql~~~ 134 (220)
T 3vp7_A 87 TT---NAPGDWLILPVYYDENFNLGRIFRKETKFDKSLETTLEIISEITRQ 134 (220)
T ss_dssp ---------CEEEEESSCCC-----------CHHHHHHHHHHHHHHHHHHH
T ss_pred cc---ccCCCCeEEecccCCCcccccccccccchhHHHHHHHHHHHHHHHH
Confidence 00 0011346799998864 1259999999888888888773
No 3
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=87.88 E-value=10 Score=31.03 Aligned_cols=86 Identities=13% Similarity=0.178 Sum_probs=47.4
Q ss_pred CCccccchhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 018202 24 ENVKVIEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVE 103 (359)
Q Consensus 24 ~~~~~~~~~~~~~~l~rL~~L~~~iq~a~~~~~~L~~qI~~~le~~~~~~~~~~~l~~~~~rl~~~~~~~~~~~~~~r~~ 103 (359)
+.+.-+..+++.. +|.....+|.+-....+.|..+|.. ..+. ...++.++..++. -...-...|.+
T Consensus 19 ~~~~~~ei~~L~~---~L~~AEeaL~~Kq~~idelk~ei~q----~~~~---lE~I~vLkaQv~I----Y~~DF~aERad 84 (110)
T 2v4h_A 19 SHMASMQLEDLRQ---QLQQAEEALVAKQELIDKLKEEAEQ----HKIV---METVPVLKAQADI----YKADFQAERHA 84 (110)
T ss_dssp CCSSCCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH----HHHH---HTHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred hHhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH----HHHH---HHHHHHHHHHHHH----HHHHHccchhh
Confidence 3444455677775 5555555555555555555554433 2222 2334444444432 22333346777
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 018202 104 KEDAKNQEERLSMEVRSLLV 123 (359)
Q Consensus 104 ~~~~~~rre~L~~~ir~l~~ 123 (359)
++.+..++++|..+++.|..
T Consensus 85 REkl~~eKe~L~~ql~~Lq~ 104 (110)
T 2v4h_A 85 REKLVEKKEYLQEQLEQLQR 104 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHH
Confidence 88888888888888865543
No 4
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=81.24 E-value=17 Score=28.12 Aligned_cols=25 Identities=28% Similarity=0.310 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018202 44 LSSALSQADDKKQTLQQKLQSLIQV 68 (359)
Q Consensus 44 L~~~iq~a~~~~~~L~~qI~~~le~ 68 (359)
|..=|++|..+..-|+-.|+++=+.
T Consensus 11 LE~KIq~avdtI~lLqmEieELKek 35 (81)
T 2jee_A 11 LEAKVQQAIDTITLLQMEIEELKEK 35 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444333
No 5
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=80.05 E-value=50 Score=41.00 Aligned_cols=13 Identities=15% Similarity=0.514 Sum_probs=9.7
Q ss_pred CCcccCcccCCCc
Q 018202 296 KPAEFPLFLEGQD 308 (359)
Q Consensus 296 ~~r~fPLy~~~~d 308 (359)
..+.|||..|.+.
T Consensus 2182 ~~~R~PLlIDPq~ 2194 (3245)
T 3vkg_A 2182 RFNRYPLVIDPSG 2194 (3245)
T ss_dssp SCSSCEEEECTTS
T ss_pred cCCCceEEEChHH
Confidence 3578999998754
No 6
>2fzt_A Hypothetical protein TM0693; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.05A {Thermotoga maritima} SCOP: a.46.3.1 PDB: 2g42_A
Probab=78.58 E-value=20 Score=27.33 Aligned_cols=67 Identities=19% Similarity=0.249 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhH
Q 018202 56 QTLQQKLQSLIQVKAESLKRSNELEEMRERL------EARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTAL 128 (359)
Q Consensus 56 ~~L~~qI~~~le~~~~~~~~~~~l~~~~~rl------~~~~~~~~~~~~~~r~~~~~~~~rre~L~~~ir~l~~~~~~l 128 (359)
..++.+|+.+|+. +.-+.+|.+-..++++ +..+-.+++. +.+.+-+.++.++|.........+..++
T Consensus 5 ~EIEk~ID~aIE~--edyE~L~~LL~kREkLlk~L~~e~l~~i~EkD----k~R~~~Ik~~~~~L~q~a~~~rna~ssl 77 (79)
T 2fzt_A 5 DEIERKIDEAIEK--EDYETLLSLLNKRKELMEGLPKDKLSEILEKD----RKRLEIIEKRKTALFQEINVIREARSSL 77 (79)
T ss_dssp HHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHhhCcHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3567888888886 2235666666666664 2233344443 3334667777777777765555444433
No 7
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=78.24 E-value=18 Score=28.96 Aligned_cols=12 Identities=8% Similarity=0.252 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q 018202 107 AKNQEERLSMEV 118 (359)
Q Consensus 107 ~~~rre~L~~~i 118 (359)
++.+-++|..++
T Consensus 81 ~aaqsaaLlsk~ 92 (114)
T 2xzr_A 81 IEDKIEEILSKI 92 (114)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 334444554444
No 8
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=76.73 E-value=44 Score=32.68 Aligned_cols=57 Identities=7% Similarity=0.116 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 018202 51 ADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDA 107 (359)
Q Consensus 51 a~~~~~~L~~qI~~~le~~~~~~~~~~~l~~~~~rl~~~~~~~~~~~~~~r~~~~~~ 107 (359)
..+..+.++++|+.+|+......+..|-...++++|...++-.-..+++.-..+..+
T Consensus 371 ~eeal~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (471)
T 3mq9_A 371 VDEALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTV 427 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhH
Confidence 445566677777777777655544444444455555444444333333333333333
No 9
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=76.32 E-value=37 Score=42.10 Aligned_cols=43 Identities=14% Similarity=0.211 Sum_probs=22.6
Q ss_pred hHHHHHHHhHHhHHHhhccc-ccchHHHHHHHHHHHHHHHHHHH
Q 018202 127 ALSVARKRLQESNRLLAGEK-GYGHLQKLQKMLRMRQQFMISQV 169 (359)
Q Consensus 127 ~l~~a~~~Lqe~~~~L~~e~-~~~~L~~lq~~L~~rr~~lv~qL 169 (359)
.+...+.+|.-|..++++-. .+.|=......+......+++++
T Consensus 2064 e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L~GD~ 2107 (3245)
T 3vkg_A 2064 ESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTVVGDV 2107 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhccHHH
Confidence 34455677777766654421 12333334455555666666654
No 10
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=75.90 E-value=47 Score=30.25 Aligned_cols=28 Identities=11% Similarity=0.171 Sum_probs=12.8
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHH
Q 018202 38 LARLWSLSSALSQADDKKQTLQQKLQSL 65 (359)
Q Consensus 38 l~rL~~L~~~iq~a~~~~~~L~~qI~~~ 65 (359)
|-.|-.+|.-|......+..|-.+|.++
T Consensus 10 L~~LQ~lD~~i~~l~~~~~~lp~el~~l 37 (256)
T 3na7_A 10 LIEISHLDKEIDSLEPLIREKRKDLDKA 37 (256)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3344444444444444444444444443
No 11
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=75.27 E-value=32 Score=28.04 Aligned_cols=37 Identities=16% Similarity=0.241 Sum_probs=26.2
Q ss_pred hhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018202 31 WEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKA 70 (359)
Q Consensus 31 ~~~~~~~l~rL~~L~~~iq~a~~~~~~L~~qI~~~le~~~ 70 (359)
|.-|+..| ..|..-|.++...+.+|..+|+.+-..-.
T Consensus 15 ~~~ye~~I---~~LR~qid~~~~e~a~l~leldn~~~~~e 51 (119)
T 3ol1_A 15 GDLYEEEM---RELRRQVDQLTNDKARVEVERDNLAEDIM 51 (119)
T ss_dssp THHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666543 55777888888888888888887655443
No 12
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=74.98 E-value=58 Score=36.14 Aligned_cols=42 Identities=17% Similarity=0.149 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 018202 77 NELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEV 118 (359)
Q Consensus 77 ~~l~~~~~rl~~~~~~~~~~~~~~r~~~~~~~~rre~L~~~i 118 (359)
+++..+++.++.....+++.....+.+.+..+.-+++|+.++
T Consensus 984 ~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv 1025 (1080)
T 2dfs_A 984 NRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLV 1025 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444433333443333333333333333334444433
No 13
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=71.17 E-value=38 Score=33.95 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 018202 44 LSSALSQADDKKQTLQQKLQSLI 66 (359)
Q Consensus 44 L~~~iq~a~~~~~~L~~qI~~~l 66 (359)
+...++.+.++....++.++..-
T Consensus 461 ~~~~i~~l~~~~~~~~~~l~~~~ 483 (597)
T 3oja_B 461 LRAEVQQLTNEQIQQEQLLQGLH 483 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555544444444444333
No 14
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=63.84 E-value=34 Score=29.36 Aligned_cols=94 Identities=15% Similarity=0.147 Sum_probs=48.8
Q ss_pred CccccchhhhHHHHHHHhcHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 018202 25 NVKVIEWEDYDQELARLWSLSSALSQADDKKQTLQ-------QKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMS 97 (359)
Q Consensus 25 ~~~~~~~~~~~~~l~rL~~L~~~iq~a~~~~~~L~-------~qI~~~le~~~~~~~~~~~l~~~~~rl~~~~~~~~~~~ 97 (359)
+|+.=+|+.+.++..||.|...-...+......|. ..+..++..-.........+....++++.....+++..
T Consensus 28 ~l~~gE~eeLe~e~~rL~nae~l~~~~~~a~~~L~~~e~~~~~~L~~a~~~L~~l~~~d~~l~~~~e~l~~a~~~l~d~~ 107 (175)
T 4abx_A 28 SPDPGEEEGLNTELSRLSNLHTIAQAAAGGVELLSDGDLNAAGLIGEAVRALNAGAKYDETVMQLQNELRAALESVQAIA 107 (175)
T ss_dssp CCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHCHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHH
Confidence 45556799999888888887665555555555443 22333333222211222345555556655555555555
Q ss_pred HhhHHHHHHHH---HHHHHHHHHH
Q 018202 98 MRSKVEKEDAK---NQEERLSMEV 118 (359)
Q Consensus 98 ~~~r~~~~~~~---~rre~L~~~i 118 (359)
..++.....+. .|-+++..++
T Consensus 108 ~~L~~y~~~le~DP~rL~~ie~RL 131 (175)
T 4abx_A 108 GELRDVAEGSAADPEALDRVEARL 131 (175)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHH
Confidence 55544333332 3444444444
No 15
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=61.08 E-value=62 Score=33.15 Aligned_cols=19 Identities=11% Similarity=0.132 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 018202 47 ALSQADDKKQTLQQKLQSL 65 (359)
Q Consensus 47 ~iq~a~~~~~~L~~qI~~~ 65 (359)
.=+|.....+.|.++++++
T Consensus 58 qErDltkrINELKnqLEdl 76 (562)
T 3ghg_A 58 VNQDFTNRINKLKNSLFEY 76 (562)
T ss_dssp HHHHHHHHHHHHHHHHTHH
T ss_pred hcCcHHHHHHHHHHHHHHH
Confidence 3344444445555555555
No 16
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=60.74 E-value=61 Score=25.67 Aligned_cols=33 Identities=15% Similarity=0.087 Sum_probs=21.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhH
Q 018202 96 MSMRSKVEKEDAKNQEERLSMEVRSLLVAGTAL 128 (359)
Q Consensus 96 ~~~~~r~~~~~~~~rre~L~~~ir~l~~~~~~l 128 (359)
.-...|..++.+..++++|...++.+......|
T Consensus 55 DF~aERadREkl~~eKe~L~~ql~~lq~q~~~L 87 (94)
T 3jsv_C 55 DFQAERHAREKLVEKKEYLQEQLEQLQREFNKL 87 (94)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 334467777888888888888886665544333
No 17
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=54.76 E-value=1.1e+02 Score=26.99 Aligned_cols=92 Identities=18% Similarity=0.196 Sum_probs=47.1
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 018202 40 RLWSLSSALSQADDKKQTLQQKLQSLIQVKAES--------LKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQE 111 (359)
Q Consensus 40 rL~~L~~~iq~a~~~~~~L~~qI~~~le~~~~~--------~~~~~~l~~~~~rl~~~~~~~~~~~~~~r~~~~~~~~rr 111 (359)
++--|..-+.+-.....-|+..++.=|+..... .....++...+.+++....-..........-...+...+
T Consensus 25 ~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~ 104 (189)
T 2v71_A 25 SFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIK 104 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566667777777777777776666643211 113344444444444443333333333444444555556
Q ss_pred HHHHHHHHHHHHhchhHHHH
Q 018202 112 ERLSMEVRSLLVAGTALSVA 131 (359)
Q Consensus 112 e~L~~~ir~l~~~~~~l~~a 131 (359)
+.|...||.+-.+-..|..+
T Consensus 105 ~~l~~~ireLEq~NDdlEr~ 124 (189)
T 2v71_A 105 EQLHKYVRELEQANDDLERA 124 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHH
Confidence 66666666555554444433
No 18
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=54.43 E-value=1e+02 Score=26.41 Aligned_cols=83 Identities=13% Similarity=0.187 Sum_probs=42.5
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 018202 36 QELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLS 115 (359)
Q Consensus 36 ~~l~rL~~L~~~iq~a~~~~~~L~~qI~~~le~~~~~~~~~~~l~~~~~rl~~~~~~~~~~~~~~r~~~~~~~~rre~L~ 115 (359)
+++-+-.+|++.+..+....+....+|..+-..+...-....+.... +.....+.......+..+.+++..+..+.
T Consensus 10 ~Ain~qs~LeD~L~~~R~el~~~~~ri~~lE~~r~~~~~l~~~~~~~----~~e~~~L~~~l~~E~~~R~~aE~~~~~ie 85 (154)
T 2ocy_A 10 ESVDKQSHLEEQLNKSLKTIASQKAAIENYNQLKEDYNTLKRELSDR----DDEVKRLREDIAKENELRTKAEEEADKLN 85 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHTHHHHH----HHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556677888888888888777766665444332221111111111 12222222223334555555666666666
Q ss_pred HHHHHHH
Q 018202 116 MEVRSLL 122 (359)
Q Consensus 116 ~~ir~l~ 122 (359)
..+.+|-
T Consensus 86 ~ElEeLT 92 (154)
T 2ocy_A 86 KEVEDLT 92 (154)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6654443
No 19
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=54.14 E-value=1.7e+02 Score=28.76 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHhhhccceeeC
Q 018202 155 QKMLRMRQQFMISQVSFLYPVKILV 179 (359)
Q Consensus 155 q~~L~~rr~~lv~qL~~IyPI~~~~ 179 (359)
-..|.-+|-.++.||+.+.+|+.+.
T Consensus 131 ~ndLlDqRD~ll~eLS~~v~v~v~~ 155 (463)
T 2d4y_A 131 PNDLLDQRDQLVSELNKIVGVEVSV 155 (463)
T ss_dssp -CHHHHHHHHHHHHHHHHSCEEEEE
T ss_pred chHhHHHHHHHHHHHHhhcCeEEEE
Confidence 4467888999999999999999874
No 20
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=53.51 E-value=73 Score=24.37 Aligned_cols=23 Identities=9% Similarity=0.312 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 018202 44 LSSALSQADDKKQTLQQKLQSLI 66 (359)
Q Consensus 44 L~~~iq~a~~~~~~L~~qI~~~l 66 (359)
++..+|++..++..|+.+|..+=
T Consensus 11 ~~~klq~~E~rN~~Le~~v~~le 33 (79)
T 3cvf_A 11 TQQKVQDLETRNAELEHQLRAME 33 (79)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHH
Confidence 33445556665555555555443
No 21
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=53.37 E-value=1.3e+02 Score=27.21 Aligned_cols=12 Identities=0% Similarity=0.271 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHH
Q 018202 156 KMLRMRQQFMIS 167 (359)
Q Consensus 156 ~~L~~rr~~lv~ 167 (359)
..+...|..+..
T Consensus 160 ~~l~~~r~~l~~ 171 (256)
T 3na7_A 160 QIIFKKKEDLVE 171 (256)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 344455555555
No 22
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=51.80 E-value=96 Score=25.25 Aligned_cols=80 Identities=20% Similarity=0.254 Sum_probs=43.4
Q ss_pred chhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 018202 30 EWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKN 109 (359)
Q Consensus 30 ~~~~~~~~l~rL~~L~~~iq~a~~~~~~L~~qI~~~le~~~~~~~~~~~l~~~~~rl~~~~~~~~~~~~~~r~~~~~~~~ 109 (359)
.|+-++.++.. |..-+..+...+..|+.. +....+. -..++.++.++++.-...+.+++...-.+..+++.
T Consensus 7 ~~~~lq~~~~q---l~~qL~k~~~~r~~Le~~----w~~k~E~--~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~ 77 (112)
T 1x79_B 7 QVKKLQLMLRQ---ANDQLEKTMKDKQELEDF----IKQSSED--SSHQISALVLRAQASEILLEELQQGLSQAKRDVQE 77 (112)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHHHHH----HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHH----HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48888866533 334444445555555554 3332221 34455555566665556666655555555665555
Q ss_pred HHHHHHHHH
Q 018202 110 QEERLSMEV 118 (359)
Q Consensus 110 rre~L~~~i 118 (359)
+-..|..+.
T Consensus 78 qL~~Lt~~R 86 (112)
T 1x79_B 78 QMAVLMQSR 86 (112)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555554
No 23
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=50.13 E-value=1.9e+02 Score=28.29 Aligned_cols=30 Identities=20% Similarity=0.067 Sum_probs=14.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 018202 91 LLMEKMSMRSKVEKEDAKNQEERLSMEVRS 120 (359)
Q Consensus 91 ~~~~~~~~~~r~~~~~~~~rre~L~~~ir~ 120 (359)
+.+.+.-...-...++++++..-|+..|+.
T Consensus 102 ~q~~dndn~~~e~s~eLe~~i~~lk~~V~~ 131 (390)
T 1deq_A 102 AKANNNDNTFKQINEDLRSRIEILRRKVIE 131 (390)
T ss_pred HhhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334443344444445555555555555543
No 24
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=49.69 E-value=1.4e+02 Score=26.65 Aligned_cols=24 Identities=4% Similarity=0.055 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018202 44 LSSALSQADDKKQTLQQKLQSLIQ 67 (359)
Q Consensus 44 L~~~iq~a~~~~~~L~~qI~~~le 67 (359)
+...+..+..+.+.|+.+++.+.+
T Consensus 137 ~~~~~~~L~~e~~~l~~~~~~l~~ 160 (213)
T 1ik9_A 137 NQAKNEHLQKENERLLRDWNDVQG 160 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444443
No 25
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=46.96 E-value=1e+02 Score=24.08 Aligned_cols=37 Identities=22% Similarity=0.176 Sum_probs=22.7
Q ss_pred hhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018202 33 DYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVK 69 (359)
Q Consensus 33 ~~~~~l~rL~~L~~~iq~a~~~~~~L~~qI~~~le~~ 69 (359)
.+++.+.++..|..-++.....+..++.+++.+-.+.
T Consensus 7 e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~ 43 (117)
T 2zqm_A 7 QVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKAL 43 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666666666554443
No 26
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=46.64 E-value=2.2e+02 Score=27.91 Aligned_cols=38 Identities=13% Similarity=0.248 Sum_probs=17.0
Q ss_pred hhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018202 33 DYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKA 70 (359)
Q Consensus 33 ~~~~~l~rL~~L~~~iq~a~~~~~~L~~qI~~~le~~~ 70 (359)
+|...+..|-+.=+.++.+-.+...+-..|.+++..+.
T Consensus 64 ~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~ 101 (390)
T 1deq_A 64 DFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDF 101 (390)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 34443333333334444444444445555555555443
No 27
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=45.35 E-value=2.6e+02 Score=28.35 Aligned_cols=7 Identities=43% Similarity=1.113 Sum_probs=5.1
Q ss_pred chhhhHH
Q 018202 30 EWEDYDQ 36 (359)
Q Consensus 30 ~~~~~~~ 36 (359)
+|+.++|
T Consensus 350 e~~~lrQ 356 (602)
T 1cii_A 350 EWDKLRQ 356 (602)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 4888876
No 28
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=44.96 E-value=1e+02 Score=23.60 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018202 44 LSSALSQADDKKQTLQQKLQSLIQV 68 (359)
Q Consensus 44 L~~~iq~a~~~~~~L~~qI~~~le~ 68 (359)
|..-|..+...+.+|..+|+.+-..
T Consensus 5 Lr~qi~~l~~e~~~l~~e~dn~~~~ 29 (86)
T 3swk_A 5 LRRQVDQLTNDKARVEVERDNLAED 29 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3355666666777777776665443
No 29
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=43.30 E-value=1.2e+02 Score=24.02 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=11.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHH
Q 018202 94 EKMSMRSKVEKEDAKNQEERLSMEV 118 (359)
Q Consensus 94 ~~~~~~~r~~~~~~~~rre~L~~~i 118 (359)
.++++..++....++++.+.|..++
T Consensus 68 N~MVa~ar~e~~~~e~kn~~L~~qL 92 (97)
T 2eqb_B 68 NNMVADARKEKYAIEILNKRLTEQL 92 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444445555555555544
No 30
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=42.34 E-value=1.4e+02 Score=24.35 Aligned_cols=25 Identities=32% Similarity=0.593 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018202 44 LSSALSQADDKKQTLQQKLQSLIQV 68 (359)
Q Consensus 44 L~~~iq~a~~~~~~L~~qI~~~le~ 68 (359)
|...+......+..|+.+...+++.
T Consensus 25 lke~l~k~e~~r~ele~~~~~l~~E 49 (129)
T 2fxo_A 25 LKEALEKSEARRKELEEKMVSLLQE 49 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 31
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=41.11 E-value=1.2e+02 Score=23.18 Aligned_cols=59 Identities=15% Similarity=0.232 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 018202 56 QTLQQKLQSLIQVKAESLK----RSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERL 114 (359)
Q Consensus 56 ~~L~~qI~~~le~~~~~~~----~~~~l~~~~~rl~~~~~~~~~~~~~~r~~~~~~~~rre~L 114 (359)
++|..++.+.+...+..++ .-+++..=..+++.+...++...+......+-++.+.++|
T Consensus 10 DKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL 72 (78)
T 3iv1_A 10 DKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEEL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666665543322 3334444444444444444444444444444333333333
No 32
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=41.09 E-value=1.2e+02 Score=23.14 Aligned_cols=55 Identities=16% Similarity=0.252 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018202 57 TLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAG 125 (359)
Q Consensus 57 ~L~~qI~~~le~~~~~~~~~~~l~~~~~rl~~~~~~~~~~~~~~r~~~~~~~~rre~L~~~ir~l~~~~ 125 (359)
-..++++.+|..+.+.+...|.+..+++.| .+++ +++.-+++.|+..+.++..+.
T Consensus 6 gmgkevEnLi~EN~eLl~TKNaLnvvk~DL---I~rv-----------dELt~E~e~l~~El~s~~~~~ 60 (77)
T 2w83_C 6 FMGREVENLILENTQLLETKNALNIVKNDL---IAKV-----------DELTCEKDVLQGELEAVKQAK 60 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH-----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH-----------HHHHhHHHHHHHHHHHHHHHH
Confidence 356788888888888887888887666554 2333 444444555555554444443
No 33
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=40.83 E-value=3.2e+02 Score=28.10 Aligned_cols=11 Identities=45% Similarity=0.634 Sum_probs=6.0
Q ss_pred HHHhHHhHHHh
Q 018202 132 RKRLQESNRLL 142 (359)
Q Consensus 132 ~~~Lqe~~~~L 142 (359)
..+|+|.+++|
T Consensus 551 ~~~~~~~~~~~ 561 (592)
T 1f5n_A 551 ALKLQEQEQLL 561 (592)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34556655555
No 34
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=40.79 E-value=2.4e+02 Score=26.70 Aligned_cols=37 Identities=19% Similarity=0.332 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhch
Q 018202 89 RRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGT 126 (359)
Q Consensus 89 ~~~~~~~~~~~~r~~~~~~~~rre~L~~~ir~l~~~~~ 126 (359)
.+..+++. ...+..++++..++++|...|+.|...|+
T Consensus 71 mq~~Le~E-re~~~~Rd~~a~~k~~Le~~ierLs~pgg 107 (302)
T 3ibp_A 71 LQQLLERE-REAIVERDEVGARKNAVDEEIERLSQPGG 107 (302)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 33444443 34455566777777788888777666443
No 35
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=38.11 E-value=1.4e+02 Score=23.02 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=15.5
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHH
Q 018202 42 WSLSSALSQADDKKQTLQQKLQSL 65 (359)
Q Consensus 42 ~~L~~~iq~a~~~~~~L~~qI~~~ 65 (359)
-+|.++++.=...|+.+..+++.+
T Consensus 13 leLQSALeaEIqAKQ~i~EELs~v 36 (81)
T 1wt6_A 13 RELQEALEEEVLTRQSLSREMEAI 36 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377777777666666666665443
No 36
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=36.73 E-value=1.9e+02 Score=24.44 Aligned_cols=25 Identities=8% Similarity=0.178 Sum_probs=9.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Q 018202 43 SLSSALSQADDKKQTLQQKLQSLIQ 67 (359)
Q Consensus 43 ~L~~~iq~a~~~~~~L~~qI~~~le 67 (359)
..+..+++.........-+++++..
T Consensus 84 ~~d~~l~~~~e~l~~a~~~l~d~~~ 108 (175)
T 4abx_A 84 KYDETVMQLQNELRAALESVQAIAG 108 (175)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhChhHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 37
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=36.01 E-value=1.8e+02 Score=23.78 Aligned_cols=24 Identities=8% Similarity=0.131 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018202 46 SALSQADDKKQTLQQKLQSLIQVK 69 (359)
Q Consensus 46 ~~iq~a~~~~~~L~~qI~~~le~~ 69 (359)
..|-.+..+.+.|...++.+....
T Consensus 15 ~~Ie~Lkreie~lk~ele~l~~E~ 38 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENMKTES 38 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666667777777777775543
No 38
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=34.15 E-value=2.7e+02 Score=25.38 Aligned_cols=35 Identities=14% Similarity=0.483 Sum_probs=27.2
Q ss_pred hhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH
Q 018202 31 WEDYDQELARLWSLSSALSQADDKKQTLQQKLQSL 65 (359)
Q Consensus 31 ~~~~~~~l~rL~~L~~~iq~a~~~~~~L~~qI~~~ 65 (359)
+++++..|-.+-+-..+++.....+++|..+|..+
T Consensus 89 ~d~yR~~LK~IR~~E~svqp~R~~R~~l~~~I~kL 123 (234)
T 3plt_A 89 YDQYRVTLKSIRNIEASVQPSRDRKEKITDEIAHL 123 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 67777777777788888888888888888888653
No 39
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=32.62 E-value=3.9e+02 Score=26.74 Aligned_cols=8 Identities=13% Similarity=0.090 Sum_probs=3.9
Q ss_pred hhccceee
Q 018202 171 FLYPVKIL 178 (359)
Q Consensus 171 ~IyPI~~~ 178 (359)
-+|.|.|.
T Consensus 228 GvY~I~p~ 235 (464)
T 1m1j_B 228 EMYIIQPD 235 (464)
T ss_dssp EEEEECSS
T ss_pred eeEEEEeC
Confidence 45555543
No 40
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=31.86 E-value=1.2e+02 Score=25.52 Aligned_cols=10 Identities=20% Similarity=0.358 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 018202 109 NQEERLSMEV 118 (359)
Q Consensus 109 ~rre~L~~~i 118 (359)
..-|+|.+++
T Consensus 74 ~ElE~LTasL 83 (135)
T 2e7s_A 74 KEVEDLTASL 83 (135)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3334444443
No 41
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=31.44 E-value=4.1e+02 Score=26.60 Aligned_cols=11 Identities=18% Similarity=0.353 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 018202 48 LSQADDKKQTL 58 (359)
Q Consensus 48 iq~a~~~~~~L 58 (359)
|+++....+.|
T Consensus 102 LqeLe~~l~~l 112 (464)
T 1m1j_B 102 LRDLKDRVAKF 112 (464)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 42
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=30.53 E-value=4e+02 Score=26.20 Aligned_cols=35 Identities=14% Similarity=0.248 Sum_probs=14.1
Q ss_pred hhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH
Q 018202 31 WEDYDQELARLWSLSSALSQADDKKQTLQQKLQSL 65 (359)
Q Consensus 31 ~~~~~~~l~rL~~L~~~iq~a~~~~~~L~~qI~~~ 65 (359)
|..++..+..+..+.....+.....+.++.++.++
T Consensus 185 ~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~ql~ei 219 (517)
T 4ad8_A 185 HAAWREAVSRLERLQASQRERARQIDLLAFQVQEI 219 (517)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33333334444443333333333444444444433
No 43
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=30.20 E-value=1.8e+02 Score=22.16 Aligned_cols=36 Identities=17% Similarity=0.222 Sum_probs=22.3
Q ss_pred hHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018202 34 YDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVK 69 (359)
Q Consensus 34 ~~~~l~rL~~L~~~iq~a~~~~~~L~~qI~~~le~~ 69 (359)
+++.+.++..|..-++.+...+..++.+++.+-.+.
T Consensus 3 ~Q~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~ 38 (107)
T 1fxk_A 3 VQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKAL 38 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666666665554443
No 44
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=30.19 E-value=1.8e+02 Score=24.34 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 018202 100 SKVEKEDAKNQEERLSMEVRSLL 122 (359)
Q Consensus 100 ~r~~~~~~~~rre~L~~~ir~l~ 122 (359)
.+..+..++.++..+...+.+|-
T Consensus 58 E~~~R~~aE~~~~~ie~ElE~LT 80 (135)
T 2e7s_A 58 ENELRTKAEEEADKLNKEVEDLT 80 (135)
T ss_dssp TTSHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555666666655554
No 45
>3k4t_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding protein, P binding; 2.59A {Cauliflower mosaic virus}
Probab=29.00 E-value=1.3e+02 Score=23.61 Aligned_cols=32 Identities=9% Similarity=0.317 Sum_probs=27.3
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018202 39 ARLWSLSSALSQADDKKQTLQQKLQSLIQVKA 70 (359)
Q Consensus 39 ~rL~~L~~~iq~a~~~~~~L~~qI~~~le~~~ 70 (359)
|.|+.+..-|.+++....+++..|+.+|+..-
T Consensus 2 ~nl~~i~~Ei~~~~~~~~~~~~~i~aiL~~~g 33 (95)
T 3k4t_A 2 ANLNQIQKEVSEILSDQKSMKADIKAILELLG 33 (95)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46778888899999999999999999998754
No 46
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=28.33 E-value=4.1e+02 Score=25.65 Aligned_cols=13 Identities=23% Similarity=-0.038 Sum_probs=5.8
Q ss_pred hhhHHHHHHHhcH
Q 018202 32 EDYDQELARLWSL 44 (359)
Q Consensus 32 ~~~~~~l~rL~~L 44 (359)
.+|+.++..|..+
T Consensus 324 ~eF~~Eve~L~~i 336 (487)
T 3oja_A 324 ETERLECERENQA 336 (487)
T ss_dssp -CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc
Confidence 3555555444433
No 47
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=27.34 E-value=3.1e+02 Score=23.81 Aligned_cols=60 Identities=23% Similarity=0.133 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHhHHhHHHhhcccccchHHHHHHHHHHHHHHHHHHH
Q 018202 109 NQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAGEKGYGHLQKLQKMLRMRQQFMISQV 169 (359)
Q Consensus 109 ~rre~L~~~ir~l~~~~~~l~~a~~~Lqe~~~~L~~e~~~~~L~~lq~~L~~rr~~lv~qL 169 (359)
.|...|...+..+......+....++|+|--..|..|...-.+ ++...|..-+..+=.++
T Consensus 97 ~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~ei-d~~~eLKalQ~~~eqE~ 156 (168)
T 3o0z_A 97 ARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEI-DLNYKLKSLQQRLEQEV 156 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHH
Confidence 3444444444444444445555566677655555444322110 22344444454444444
No 48
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=27.30 E-value=2.5e+02 Score=22.72 Aligned_cols=21 Identities=14% Similarity=0.199 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 018202 48 LSQADDKKQTLQQKLQSLIQV 68 (359)
Q Consensus 48 iq~a~~~~~~L~~qI~~~le~ 68 (359)
+.++..+.++|...++..=..
T Consensus 5 ~rdL~~~~~~L~~E~e~~k~K 25 (111)
T 2v66_B 5 NRDLQADNQRLKYEVEALKEK 25 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666655444
No 49
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=26.34 E-value=3.9e+02 Score=26.26 Aligned_cols=9 Identities=44% Similarity=0.264 Sum_probs=5.3
Q ss_pred hhhccceee
Q 018202 170 SFLYPVKIL 178 (359)
Q Consensus 170 ~~IyPI~~~ 178 (359)
+-+|.|.|.
T Consensus 164 SGvY~I~p~ 172 (409)
T 1m1j_C 164 SGLYFIKPQ 172 (409)
T ss_dssp CEEEEECCT
T ss_pred CeeEEEecC
Confidence 456666653
No 50
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=26.26 E-value=2.2e+02 Score=21.73 Aligned_cols=27 Identities=19% Similarity=0.380 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018202 44 LSSALSQADDKKQTLQQKLQSLIQVKA 70 (359)
Q Consensus 44 L~~~iq~a~~~~~~L~~qI~~~le~~~ 70 (359)
|...+......+..|+.+...+++...
T Consensus 26 lke~l~k~e~~rkele~~~~~l~~ek~ 52 (89)
T 3bas_A 26 MKEDLAKTERIKKELEEQNVTLLEQKN 52 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555555555555443
No 51
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=26.14 E-value=2.6e+02 Score=22.65 Aligned_cols=21 Identities=29% Similarity=0.377 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 018202 48 LSQADDKKQTLQQKLQSLIQV 68 (359)
Q Consensus 48 iq~a~~~~~~L~~qI~~~le~ 68 (359)
|.+...+...|+.+|+++...
T Consensus 40 i~elrr~iq~L~~el~~l~~~ 60 (131)
T 3tnu_A 40 ISELRRTMQNLEIELQSQLSM 60 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 555555566666666655443
No 52
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=26.05 E-value=3.1e+02 Score=23.42 Aligned_cols=100 Identities=15% Similarity=0.110 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH---HHHHHH
Q 018202 43 SLSSALSQADDKKQTLQQKLQSLIQVKA--ESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQE---ERLSME 117 (359)
Q Consensus 43 ~L~~~iq~a~~~~~~L~~qI~~~le~~~--~~~~~~~~l~~~~~rl~~~~~~~~~~~~~~r~~~~~~~~rr---e~L~~~ 117 (359)
+.|..+-+.+..+..+++....+.+.-. ..-+.+.......+.++.....+..+..+++...++++.+. +.|+..
T Consensus 25 ~md~~l~~rL~~Rd~~E~~~~~l~~e~~~~~~~~~vs~~~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DE 104 (152)
T 3a7p_A 25 SMDDLLIRRLTDRNDKEAHLNELFQDNSGAIGGNIVSHDDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAA 104 (152)
T ss_dssp --------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhchhHHHHHHHhHHhHHHh
Q 018202 118 VRSLLVAGTALSVARKRLQESNRLL 142 (359)
Q Consensus 118 ir~l~~~~~~l~~a~~~Lqe~~~~L 142 (359)
+-++......+..+.++|++-+..|
T Consensus 105 l~aLqlq~n~lE~kl~kLq~EN~~L 129 (152)
T 3a7p_A 105 LISGTIENNVLQQKLSDLKKEHSQL 129 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
No 53
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=26.03 E-value=2.8e+02 Score=27.48 Aligned_cols=23 Identities=13% Similarity=0.195 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 018202 47 ALSQADDKKQTLQQKLQSLIQVK 69 (359)
Q Consensus 47 ~iq~a~~~~~~L~~qI~~~le~~ 69 (359)
.|.++-.++..+..+++.+-..+
T Consensus 32 ~~~~l~~~~r~~~~~~~~l~~~~ 54 (455)
T 2dq0_A 32 EILKLDTEWRTKLKEINRLRHER 54 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 54
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=25.43 E-value=3.2e+02 Score=23.34 Aligned_cols=16 Identities=6% Similarity=0.281 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 018202 49 SQADDKKQTLQQKLQS 64 (359)
Q Consensus 49 q~a~~~~~~L~~qI~~ 64 (359)
.+|..--+-+++.|+.
T Consensus 55 ~eAq~Atd~ye~ai~n 70 (158)
T 3tul_A 55 GEAQEATDLYEASIKK 70 (158)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc
Confidence 3333333333333333
No 55
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=25.41 E-value=2.1e+02 Score=21.36 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=15.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Q 018202 43 SLSSALSQADDKKQTLQQKLQSLIQ 67 (359)
Q Consensus 43 ~L~~~iq~a~~~~~~L~~qI~~~le 67 (359)
+++.-||++..++..|+.+|..+=+
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~ 28 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQ 28 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3455566666666666666655443
No 56
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=24.61 E-value=3.3e+02 Score=23.24 Aligned_cols=80 Identities=19% Similarity=0.162 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 018202 46 SALSQADDKKQTLQQKLQSLIQVKAE-SLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVA 124 (359)
Q Consensus 46 ~~iq~a~~~~~~L~~qI~~~le~~~~-~~~~~~~l~~~~~rl~~~~~~~~~~~~~~r~~~~~~~~rre~L~~~ir~l~~~ 124 (359)
.+++++.-+.+...+.|++=-+.+.. +.+-...++++..-.+.-...+.++-. .+.....++++-++++.++..|...
T Consensus 20 ~Sl~qL~nrla~~~am~~sqqq~~eqlS~eFqtal~eAq~Atd~ye~ai~n~~s-A~~~~d~lekKl~~aq~kL~~L~P~ 98 (158)
T 3tul_A 20 VSLSQLESRLAVWQAMIESQKEMGIQVSKEFQTALGEAQEATDLYEASIKKTDT-AKSVYDAATKKLTQAQNKLQSLDPA 98 (158)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHTC--CCTHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTTC---
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45666666666665555544333211 111223333333333333444444332 2334455566666666666555544
Q ss_pred ch
Q 018202 125 GT 126 (359)
Q Consensus 125 ~~ 126 (359)
.+
T Consensus 99 ~P 100 (158)
T 3tul_A 99 DP 100 (158)
T ss_dssp --
T ss_pred Cc
Confidence 44
No 57
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=24.28 E-value=3.7e+02 Score=23.68 Aligned_cols=25 Identities=8% Similarity=0.137 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Q 018202 100 SKVEKEDAKNQEERLSMEVRSLLVA 124 (359)
Q Consensus 100 ~r~~~~~~~~rre~L~~~ir~l~~~ 124 (359)
.+....+++...|.|.++.|-....
T Consensus 107 l~~~ireLEq~NDdlEr~~R~~~~S 131 (189)
T 2v71_A 107 LHKYVRELEQANDDLERAKRATIMS 131 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhh
Confidence 4444455555666666655544333
No 58
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=23.97 E-value=1.3e+02 Score=19.17 Aligned_cols=16 Identities=13% Similarity=0.135 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 018202 57 TLQQKLQSLIQVKAES 72 (359)
Q Consensus 57 ~L~~qI~~~le~~~~~ 72 (359)
.|+.+++.++..+.+.
T Consensus 4 QLEdKVEell~~~~~l 19 (33)
T 2wq1_A 4 QLEDKIEENTSKIYHN 19 (33)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHH
Confidence 5677777777765433
No 59
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=23.27 E-value=2.3e+02 Score=23.41 Aligned_cols=33 Identities=9% Similarity=0.310 Sum_probs=26.1
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018202 39 ARLWSLSSALSQADDKKQTLQQKLQSLIQVKAE 71 (359)
Q Consensus 39 ~rL~~L~~~iq~a~~~~~~L~~qI~~~le~~~~ 71 (359)
|.|+.+..-|.+++.....|...|.++++....
T Consensus 2 ~nl~~i~~ei~e~~~~i~~l~~~Ik~il~~~~s 34 (129)
T 3f6n_A 2 ANLNQIQKEVSEILSDQKSMKADIKAILELLGS 34 (129)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 567777888888888888888888888887643
No 60
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=22.99 E-value=1.4e+02 Score=19.03 Aligned_cols=15 Identities=13% Similarity=0.133 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHH
Q 018202 57 TLQQKLQSLIQVKAE 71 (359)
Q Consensus 57 ~L~~qI~~~le~~~~ 71 (359)
.|+.+++++|..+.+
T Consensus 4 QLEdKvEeLl~~~~~ 18 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYH 18 (33)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhH
Confidence 467777777776643
No 61
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=22.88 E-value=2.6e+02 Score=21.53 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=13.1
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHH
Q 018202 40 RLWSLSSALSQADDKKQTLQQKLQSL 65 (359)
Q Consensus 40 rL~~L~~~iq~a~~~~~~L~~qI~~~ 65 (359)
||++--+=+..+...+..|+.+|+.+
T Consensus 17 RlAsyIdKVR~LEqqN~~Le~~i~~l 42 (93)
T 3s4r_A 17 RFANLIDKVRFLEQQNKILLAELEQL 42 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555555555555555443
No 62
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=22.83 E-value=1.4e+02 Score=19.18 Aligned_cols=16 Identities=13% Similarity=0.320 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 018202 57 TLQQKLQSLIQVKAES 72 (359)
Q Consensus 57 ~L~~qI~~~le~~~~~ 72 (359)
.|+.+++.+|..+.+.
T Consensus 5 QLEdKvEeLl~~~~~L 20 (34)
T 2bni_A 5 QIEDKLEEILSKGHHI 20 (34)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHH
Confidence 5677777777766543
No 63
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=22.60 E-value=3.1e+02 Score=22.16 Aligned_cols=20 Identities=30% Similarity=0.312 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 018202 105 EDAKNQEERLSMEVRSLLVA 124 (359)
Q Consensus 105 ~~~~~rre~L~~~ir~l~~~ 124 (359)
..+...++.|...||.+..+
T Consensus 45 ~~lr~~~~~l~~~iReLEq~ 64 (111)
T 2v66_B 45 SQTRAIKEQLHKYVRELEQA 64 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33333444444444433333
No 64
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=22.54 E-value=2.6e+02 Score=21.37 Aligned_cols=34 Identities=24% Similarity=0.224 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 018202 53 DKKQTLQQKLQSLIQVKAESLKRSNELEEMRERL 86 (359)
Q Consensus 53 ~~~~~L~~qI~~~le~~~~~~~~~~~l~~~~~rl 86 (359)
+-.+.|+.+|+.+++.-.-.--.+.++++....+
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L 39 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSL 39 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457899999999997643322444444433333
No 65
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=22.34 E-value=3.6e+02 Score=22.95 Aligned_cols=18 Identities=17% Similarity=0.298 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018202 101 KVEKEDAKNQEERLSMEV 118 (359)
Q Consensus 101 r~~~~~~~~rre~L~~~i 118 (359)
...+..++..-|+|.+++
T Consensus 78 E~~~~~ie~ElEeLTasL 95 (154)
T 2ocy_A 78 EEEADKLNKEVEDLTASL 95 (154)
T ss_dssp HTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455566666777666
No 66
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=22.30 E-value=3.1e+02 Score=22.15 Aligned_cols=20 Identities=20% Similarity=0.194 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 018202 48 LSQADDKKQTLQQKLQSLIQ 67 (359)
Q Consensus 48 iq~a~~~~~~L~~qI~~~le 67 (359)
.+++..+...|..+.+++..
T Consensus 36 r~ele~~~~~l~~Ek~~L~~ 55 (129)
T 2fxo_A 36 RKELEEKMVSLLQEKNDLQL 55 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444333
No 67
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=21.82 E-value=3.2e+02 Score=22.04 Aligned_cols=20 Identities=15% Similarity=0.321 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 018202 48 LSQADDKKQTLQQKLQSLIQ 67 (359)
Q Consensus 48 iq~a~~~~~~L~~qI~~~le 67 (359)
|.+...+...|+.+|+++..
T Consensus 38 i~elrr~iq~L~~el~~l~~ 57 (129)
T 3tnu_B 38 ISEMNRMIQRLRAEIDNVKK 57 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44445555555555555433
No 68
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=21.65 E-value=3.4e+02 Score=27.31 Aligned_cols=23 Identities=9% Similarity=-0.051 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 018202 47 ALSQADDKKQTLQQKLQSLIQVK 69 (359)
Q Consensus 47 ~iq~a~~~~~~L~~qI~~~le~~ 69 (359)
.|-++-.++..+..+++.+-..+
T Consensus 34 ~~~~ld~~~r~~~~~~~~l~~~r 56 (485)
T 3qne_A 34 EIIAEYKEWVKLRFDLDEHNKKL 56 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=21.11 E-value=5.6e+02 Score=24.67 Aligned_cols=43 Identities=19% Similarity=0.057 Sum_probs=19.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHhHHh
Q 018202 93 MEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQES 138 (359)
Q Consensus 93 ~~~~~~~~r~~~~~~~~rre~L~~~ir~l~~~~~~l~~a~~~Lqe~ 138 (359)
+..+....+...+.++++++.++..++.+ ...+..|...++|+
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 475 (487)
T 3oja_A 433 AIRDWDMYQHKETQLAEENARLKKLNGEA---DLALASANATLQEL 475 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred chhhhhhhhhHHHHHHHHhhhhhhhhhhh---hhhhHhcccHHHHH
Confidence 33333334444444444444554444332 23344555555554
No 70
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=20.52 E-value=2.1e+02 Score=23.69 Aligned_cols=25 Identities=4% Similarity=-0.102 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Q 018202 100 SKVEKEDAKNQEERLSMEVRSLLVA 124 (359)
Q Consensus 100 ~r~~~~~~~~rre~L~~~ir~l~~~ 124 (359)
...+.+-+++|.+.|..++..+...
T Consensus 96 ~~eA~~~l~~ri~~l~~~l~~l~~~ 120 (151)
T 2zdi_C 96 IDEAISFLEKRLKEYDEAIKKTQGA 120 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555444333
No 71
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=20.18 E-value=6.6e+02 Score=25.15 Aligned_cols=25 Identities=16% Similarity=0.249 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018202 46 SALSQADDKKQTLQQKLQSLIQVKA 70 (359)
Q Consensus 46 ~~iq~a~~~~~~L~~qI~~~le~~~ 70 (359)
+.|.++-.++..+..+++++-..+.
T Consensus 70 ~~~~~ld~~~r~~~~~~~~l~~~rn 94 (501)
T 1wle_A 70 PGIISTWQELRQLREQIRSLEEEKE 94 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555544443
Done!