Query 018205
Match_columns 359
No_of_seqs 200 out of 2300
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 07:01:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018205.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018205hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3178 Hydroxyindole-O-methyl 100.0 6.2E-40 1.3E-44 290.9 23.3 331 14-359 5-342 (342)
2 TIGR02716 C20_methyl_CrtF C-20 100.0 5E-37 1.1E-41 281.1 22.3 289 27-346 2-305 (306)
3 PF00891 Methyltransf_2: O-met 100.0 9E-37 1.9E-41 270.3 18.0 234 96-336 3-241 (241)
4 COG2226 UbiE Methylase involve 99.8 1.3E-17 2.9E-22 144.0 16.4 165 182-356 41-234 (238)
5 PF01209 Ubie_methyltran: ubiE 99.7 3.6E-18 7.8E-23 149.1 8.9 168 182-358 37-232 (233)
6 PLN02233 ubiquinone biosynthes 99.7 1.1E-16 2.3E-21 143.0 18.3 160 192-358 71-260 (261)
7 TIGR02752 MenG_heptapren 2-hep 99.7 2.3E-16 5E-21 138.9 17.4 168 182-359 35-231 (231)
8 TIGR00740 methyltransferase, p 99.7 1.5E-17 3.2E-22 147.1 9.5 154 193-354 52-234 (239)
9 PRK15451 tRNA cmo(5)U34 methyl 99.7 2.5E-17 5.4E-22 146.1 10.6 153 193-348 55-231 (247)
10 PTZ00098 phosphoethanolamine N 99.7 2.1E-16 4.6E-21 141.2 15.5 155 182-349 42-204 (263)
11 PRK14103 trans-aconitate 2-met 99.7 3.3E-16 7.2E-21 139.8 16.2 157 182-346 19-183 (255)
12 PLN02244 tocopherol O-methyltr 99.7 2.2E-15 4.8E-20 139.6 15.8 151 193-349 117-280 (340)
13 PRK00216 ubiE ubiquinone/menaq 99.6 1.3E-14 2.8E-19 128.3 17.7 168 182-359 41-238 (239)
14 TIGR01934 MenG_MenH_UbiE ubiqu 99.6 2.5E-14 5.4E-19 125.0 17.1 168 182-359 29-223 (223)
15 PF13489 Methyltransf_23: Meth 99.6 2.9E-15 6.4E-20 124.0 10.5 137 192-344 20-160 (161)
16 TIGR00452 methyltransferase, p 99.6 8.2E-15 1.8E-19 133.0 14.2 153 183-348 112-274 (314)
17 PLN02490 MPBQ/MSBQ methyltrans 99.6 6.1E-15 1.3E-19 134.8 13.4 140 193-349 112-258 (340)
18 PRK15068 tRNA mo(5)U34 methylt 99.6 7.6E-15 1.7E-19 134.6 13.9 153 183-348 113-275 (322)
19 PLN02336 phosphoethanolamine N 99.6 1.2E-14 2.6E-19 141.3 15.6 151 182-348 256-415 (475)
20 COG2230 Cfa Cyclopropane fatty 99.6 9.4E-15 2E-19 128.6 12.2 156 182-349 62-225 (283)
21 PRK11207 tellurite resistance 99.6 2E-14 4.4E-19 123.0 13.9 142 182-347 20-170 (197)
22 KOG1540 Ubiquinone biosynthesi 99.6 2.6E-14 5.6E-19 121.4 14.0 169 168-344 74-278 (296)
23 smart00828 PKS_MT Methyltransf 99.6 1.1E-14 2.4E-19 127.5 12.4 136 196-349 1-146 (224)
24 PF12847 Methyltransf_18: Meth 99.6 4E-15 8.7E-20 115.5 8.4 98 194-294 1-111 (112)
25 PRK11036 putative S-adenosyl-L 99.6 8.5E-15 1.8E-19 130.7 11.4 153 193-352 43-212 (255)
26 PLN02396 hexaprenyldihydroxybe 99.6 9.7E-15 2.1E-19 133.1 11.8 144 194-348 131-290 (322)
27 PF02353 CMAS: Mycolic acid cy 99.6 1.1E-14 2.3E-19 130.1 11.9 159 182-349 52-219 (273)
28 PF13847 Methyltransf_31: Meth 99.6 6.3E-15 1.4E-19 121.0 9.0 138 193-339 2-152 (152)
29 PRK01683 trans-aconitate 2-met 99.6 7.6E-14 1.6E-18 124.9 16.5 154 182-342 21-182 (258)
30 PRK11873 arsM arsenite S-adeno 99.6 6E-14 1.3E-18 126.5 14.9 146 192-348 75-231 (272)
31 PRK06922 hypothetical protein; 99.5 2.8E-14 6.1E-19 138.2 11.4 142 154-300 377-543 (677)
32 PRK08317 hypothetical protein; 99.5 1.4E-13 3E-18 121.6 14.2 157 183-348 10-177 (241)
33 TIGR02021 BchM-ChlM magnesium 99.5 1E-13 2.3E-18 120.9 13.0 180 156-348 16-207 (219)
34 PRK05785 hypothetical protein; 99.5 3.2E-13 7E-18 117.9 15.7 152 194-358 51-223 (226)
35 COG4106 Tam Trans-aconitate me 99.5 1.7E-13 3.7E-18 113.6 12.0 156 182-348 20-186 (257)
36 PRK06202 hypothetical protein; 99.5 3.7E-13 8E-18 118.5 14.8 150 193-349 59-224 (232)
37 KOG1270 Methyltransferases [Co 99.5 3.1E-14 6.7E-19 121.8 7.5 143 195-348 90-250 (282)
38 TIGR00477 tehB tellurite resis 99.5 4.2E-13 9.1E-18 114.7 14.4 142 182-347 20-169 (195)
39 PF08242 Methyltransf_12: Meth 99.5 1.9E-14 4E-19 109.2 4.4 87 199-290 1-99 (99)
40 PF08241 Methyltransf_11: Meth 99.5 8.3E-14 1.8E-18 104.4 7.5 88 199-292 1-95 (95)
41 COG2227 UbiG 2-polyprenyl-3-me 99.5 1.1E-13 2.5E-18 117.6 9.1 144 194-348 59-216 (243)
42 smart00138 MeTrc Methyltransfe 99.5 2.5E-13 5.4E-18 121.3 11.6 99 193-294 98-242 (264)
43 PF06080 DUF938: Protein of un 99.5 1.2E-12 2.6E-17 109.8 13.8 162 192-359 22-204 (204)
44 PRK10258 biotin biosynthesis p 99.5 1.5E-12 3.2E-17 116.0 15.2 146 182-342 32-182 (251)
45 TIGR03587 Pse_Me-ase pseudamin 99.5 3.6E-13 7.8E-18 115.6 10.2 102 193-299 42-147 (204)
46 KOG4300 Predicted methyltransf 99.5 7.4E-13 1.6E-17 109.1 11.0 153 193-354 75-239 (252)
47 TIGR02072 BioC biotin biosynth 99.4 2E-12 4.2E-17 114.3 13.9 137 194-347 34-176 (240)
48 PRK07580 Mg-protoporphyrin IX 99.4 1.7E-12 3.7E-17 114.1 12.9 145 193-349 62-216 (230)
49 PRK11705 cyclopropane fatty ac 99.4 1.7E-12 3.8E-17 121.8 13.1 153 183-349 158-314 (383)
50 PRK12335 tellurite resistance 99.4 2.5E-12 5.5E-17 116.6 13.1 140 183-346 111-258 (287)
51 TIGR03438 probable methyltrans 99.4 3.2E-12 6.9E-17 116.6 13.7 132 153-292 27-175 (301)
52 PRK08287 cobalt-precorrin-6Y C 99.4 3.2E-12 6.9E-17 108.7 12.8 127 184-348 23-157 (187)
53 PLN02585 magnesium protoporphy 99.4 9E-13 1.9E-17 119.9 9.9 144 194-349 144-301 (315)
54 PF08003 Methyltransf_9: Prote 99.4 4.3E-12 9.3E-17 111.9 12.6 154 182-348 105-268 (315)
55 PF13649 Methyltransf_25: Meth 99.4 6.1E-13 1.3E-17 101.2 6.4 88 198-288 1-101 (101)
56 PLN02336 phosphoethanolamine N 99.4 3.2E-12 6.9E-17 124.4 12.8 144 182-345 27-180 (475)
57 PLN03075 nicotianamine synthas 99.4 3.8E-12 8.3E-17 113.5 11.4 137 193-359 122-274 (296)
58 TIGR00537 hemK_rel_arch HemK-r 99.4 1.4E-11 3E-16 104.0 14.1 132 194-358 19-176 (179)
59 PF03848 TehB: Tellurite resis 99.4 5.7E-12 1.2E-16 105.7 11.5 140 183-346 21-168 (192)
60 PRK04266 fibrillarin; Provisio 99.4 1.8E-11 3.8E-16 106.5 14.4 133 192-351 70-214 (226)
61 PF05891 Methyltransf_PK: AdoM 99.4 1.8E-12 4E-17 109.2 7.7 140 194-350 55-204 (218)
62 PF05401 NodS: Nodulation prot 99.4 1.9E-12 4E-17 107.3 7.4 135 187-348 38-180 (201)
63 TIGR03840 TMPT_Se_Te thiopurin 99.3 3.3E-11 7.2E-16 104.0 14.6 132 193-347 33-187 (213)
64 TIGR00138 gidB 16S rRNA methyl 99.3 2.4E-11 5.2E-16 102.3 12.0 90 195-293 43-141 (181)
65 TIGR02081 metW methionine bios 99.3 1.4E-11 3E-16 105.4 9.5 141 193-348 12-168 (194)
66 PRK00107 gidB 16S rRNA methylt 99.3 8.6E-11 1.9E-15 99.2 13.9 117 194-348 45-170 (187)
67 PRK15001 SAM-dependent 23S rib 99.3 2E-11 4.3E-16 113.5 10.5 108 182-294 218-340 (378)
68 PRK05134 bifunctional 3-demeth 99.3 9.7E-11 2.1E-15 103.2 13.1 149 193-348 47-206 (233)
69 PRK13255 thiopurine S-methyltr 99.2 1.3E-10 2.9E-15 100.6 13.1 132 193-347 36-190 (218)
70 PF07021 MetW: Methionine bios 99.2 4.1E-11 9E-16 99.2 8.9 143 193-350 12-170 (193)
71 TIGR01983 UbiG ubiquinone bios 99.2 8.1E-11 1.8E-15 103.0 11.4 146 194-348 45-204 (224)
72 TIGR02469 CbiT precorrin-6Y C5 99.2 9.7E-11 2.1E-15 92.3 10.1 101 183-293 10-121 (124)
73 KOG2361 Predicted methyltransf 99.2 1.4E-11 3E-16 104.2 5.2 146 196-346 73-236 (264)
74 PRK09489 rsmC 16S ribosomal RN 99.2 1.1E-10 2.4E-15 107.8 11.3 109 183-296 187-305 (342)
75 PTZ00146 fibrillarin; Provisio 99.2 7.3E-10 1.6E-14 98.6 15.8 133 192-350 130-274 (293)
76 PF05175 MTS: Methyltransferas 99.2 7.9E-11 1.7E-15 98.4 8.5 98 194-294 31-140 (170)
77 PF12147 Methyltransf_20: Puta 99.2 4.7E-10 1E-14 98.1 12.9 155 193-359 134-311 (311)
78 TIGR03534 RF_mod_PrmC protein- 99.2 4.5E-10 9.8E-15 100.0 12.8 124 194-349 87-243 (251)
79 PRK00517 prmA ribosomal protei 99.2 3.8E-10 8.3E-15 100.3 12.2 124 193-358 118-249 (250)
80 PRK11188 rrmJ 23S rRNA methylt 99.1 1E-09 2.2E-14 94.7 12.8 104 183-294 41-165 (209)
81 PRK00121 trmB tRNA (guanine-N( 99.1 1.2E-10 2.5E-15 100.1 7.0 98 194-294 40-156 (202)
82 PRK09328 N5-glutamine S-adenos 99.1 2.4E-09 5.3E-14 96.7 14.7 134 193-358 107-274 (275)
83 PRK14968 putative methyltransf 99.1 2.5E-09 5.5E-14 90.8 14.0 123 193-348 22-174 (188)
84 COG2813 RsmC 16S RNA G1207 met 99.1 3.8E-09 8.3E-14 93.6 14.8 109 182-295 148-267 (300)
85 COG2242 CobL Precorrin-6B meth 99.1 2.4E-09 5.2E-14 88.2 12.2 102 184-296 26-137 (187)
86 PLN02232 ubiquinone biosynthes 99.1 5.5E-10 1.2E-14 92.3 8.5 128 222-356 1-157 (160)
87 COG4123 Predicted O-methyltran 99.1 1.7E-09 3.8E-14 93.8 11.5 133 183-348 34-195 (248)
88 PRK14966 unknown domain/N5-glu 99.0 5.1E-09 1.1E-13 97.7 14.4 134 193-358 250-417 (423)
89 KOG2899 Predicted methyltransf 99.0 1.8E-09 3.9E-14 91.5 10.0 150 182-341 46-249 (288)
90 TIGR00536 hemK_fam HemK family 99.0 3.6E-09 7.9E-14 95.8 12.7 94 196-292 116-242 (284)
91 COG4976 Predicted methyltransf 99.0 3.3E-10 7.1E-15 95.1 5.1 161 166-348 94-266 (287)
92 PHA03411 putative methyltransf 99.0 2.2E-09 4.8E-14 94.5 10.4 123 195-342 65-209 (279)
93 PRK13944 protein-L-isoaspartat 99.0 1.2E-09 2.6E-14 94.1 8.6 98 183-293 63-172 (205)
94 PRK11088 rrmA 23S rRNA methylt 99.0 9.2E-10 2E-14 99.2 7.9 90 194-295 85-182 (272)
95 TIGR00091 tRNA (guanine-N(7)-) 99.0 1.2E-09 2.6E-14 93.3 8.0 97 194-294 16-132 (194)
96 TIGR03533 L3_gln_methyl protei 99.0 1.4E-09 3E-14 98.4 8.4 96 194-292 121-249 (284)
97 KOG1271 Methyltransferases [Ge 99.0 1.7E-09 3.6E-14 87.7 7.5 125 194-350 67-208 (227)
98 PRK01544 bifunctional N5-gluta 99.0 8.5E-09 1.8E-13 100.4 13.0 131 195-357 139-304 (506)
99 PRK00377 cbiT cobalt-precorrin 99.0 8.7E-09 1.9E-13 88.3 11.6 98 185-292 33-143 (198)
100 PF05148 Methyltransf_8: Hypot 98.9 1.7E-08 3.6E-13 84.6 12.6 158 157-358 31-196 (219)
101 PRK13256 thiopurine S-methyltr 98.9 6.3E-09 1.4E-13 89.9 10.3 100 193-297 42-166 (226)
102 PRK13942 protein-L-isoaspartat 98.9 5E-09 1.1E-13 90.7 9.4 100 182-294 66-176 (212)
103 TIGR00438 rrmJ cell division p 98.9 1.2E-08 2.7E-13 86.7 11.5 103 183-293 22-145 (188)
104 PRK14121 tRNA (guanine-N(7)-)- 98.9 5.7E-09 1.2E-13 96.8 10.1 108 183-296 113-237 (390)
105 PF05724 TPMT: Thiopurine S-me 98.9 5E-09 1.1E-13 90.6 9.1 133 192-347 35-190 (218)
106 PRK11805 N5-glutamine S-adenos 98.9 2.9E-09 6.2E-14 97.2 8.0 94 196-292 135-261 (307)
107 TIGR00406 prmA ribosomal prote 98.9 5E-09 1.1E-13 95.1 9.5 93 194-295 159-260 (288)
108 PF01739 CheR: CheR methyltran 98.9 2.2E-09 4.7E-14 91.1 6.1 97 194-293 31-174 (196)
109 TIGR00080 pimt protein-L-isoas 98.9 7.9E-09 1.7E-13 89.8 9.7 98 183-293 68-176 (215)
110 PRK07402 precorrin-6B methylas 98.9 6.4E-09 1.4E-13 89.0 9.0 101 184-295 32-143 (196)
111 PRK14967 putative methyltransf 98.9 2.9E-08 6.2E-13 86.8 13.1 102 192-297 34-162 (223)
112 PRK04457 spermidine synthase; 98.9 3.4E-09 7.3E-14 94.6 7.1 97 193-293 65-176 (262)
113 KOG3045 Predicted RNA methylas 98.9 3.6E-08 7.7E-13 84.4 12.6 157 156-358 138-302 (325)
114 COG2264 PrmA Ribosomal protein 98.9 2E-08 4.4E-13 89.6 11.3 127 193-356 161-297 (300)
115 PF05219 DREV: DREV methyltran 98.9 1E-08 2.2E-13 88.8 8.8 144 194-350 94-243 (265)
116 cd02440 AdoMet_MTases S-adenos 98.8 1.2E-08 2.7E-13 76.8 7.6 92 197-293 1-103 (107)
117 PF06325 PrmA: Ribosomal prote 98.8 2.6E-08 5.7E-13 89.6 10.9 126 193-358 160-294 (295)
118 TIGR03704 PrmC_rel_meth putati 98.8 4.2E-08 9.1E-13 87.1 11.8 123 194-348 86-241 (251)
119 KOG3010 Methyltransferase [Gen 98.8 7.6E-09 1.6E-13 87.9 6.3 96 194-296 33-139 (261)
120 PF13659 Methyltransf_26: Meth 98.8 8.3E-09 1.8E-13 80.5 5.9 96 196-295 2-116 (117)
121 COG2890 HemK Methylase of poly 98.8 7.6E-08 1.6E-12 86.6 12.6 129 197-357 113-274 (280)
122 COG1352 CheR Methylase of chem 98.8 2.8E-08 6E-13 88.0 9.1 98 194-294 96-241 (268)
123 TIGR01177 conserved hypothetic 98.8 8E-08 1.7E-12 89.0 12.1 120 192-348 180-316 (329)
124 PF08100 Dimerisation: Dimeris 98.7 5.4E-09 1.2E-13 67.5 2.3 49 30-78 1-51 (51)
125 PRK10611 chemotaxis methyltran 98.7 4.1E-08 8.8E-13 88.1 7.6 96 195-293 116-261 (287)
126 PRK00811 spermidine synthase; 98.7 2.7E-08 5.9E-13 89.9 6.5 97 193-292 75-189 (283)
127 PRK00312 pcm protein-L-isoaspa 98.7 1E-07 2.2E-12 82.7 9.8 97 183-294 69-175 (212)
128 PF04672 Methyltransf_19: S-ad 98.6 1.6E-07 3.5E-12 82.3 8.9 140 194-343 68-232 (267)
129 PRK03612 spermidine synthase; 98.6 2E-07 4.3E-12 91.4 10.5 97 193-293 296-414 (521)
130 PRK01581 speE spermidine synth 98.6 5.5E-08 1.2E-12 89.1 6.1 98 193-293 149-267 (374)
131 PF03291 Pox_MCEL: mRNA cappin 98.6 1.1E-07 2.4E-12 87.3 7.6 119 174-296 38-188 (331)
132 smart00650 rADc Ribosomal RNA 98.6 1.5E-07 3.3E-12 78.5 7.4 81 183-268 4-92 (169)
133 PLN02366 spermidine synthase 98.6 2.2E-07 4.8E-12 84.5 8.3 97 193-292 90-204 (308)
134 PRK13943 protein-L-isoaspartat 98.6 2.4E-07 5.2E-12 84.8 8.3 99 183-294 71-180 (322)
135 PLN02672 methionine S-methyltr 98.6 4.4E-07 9.6E-12 94.2 11.2 65 195-259 119-210 (1082)
136 TIGR00417 speE spermidine synt 98.5 2.2E-07 4.8E-12 83.5 7.8 98 193-293 71-185 (270)
137 TIGR03439 methyl_EasF probable 98.5 5.8E-07 1.3E-11 81.9 10.6 136 153-296 40-200 (319)
138 COG2518 Pcm Protein-L-isoaspar 98.5 6.2E-07 1.3E-11 75.7 8.6 99 182-295 62-170 (209)
139 COG2519 GCD14 tRNA(1-methylade 98.5 6.5E-07 1.4E-11 77.3 8.5 105 182-298 84-199 (256)
140 PHA03412 putative methyltransf 98.5 6.3E-07 1.4E-11 77.3 7.9 94 195-292 50-160 (241)
141 PLN02781 Probable caffeoyl-CoA 98.5 6.5E-07 1.4E-11 78.6 8.1 97 193-298 67-181 (234)
142 PF01135 PCMT: Protein-L-isoas 98.4 3.6E-07 7.7E-12 78.5 5.6 100 182-294 62-172 (209)
143 KOG1975 mRNA cap methyltransfe 98.4 6.1E-07 1.3E-11 79.4 6.6 103 183-292 109-235 (389)
144 PRK10901 16S rRNA methyltransf 98.4 1.4E-06 3.1E-11 83.5 9.8 110 185-299 237-377 (427)
145 PF11968 DUF3321: Putative met 98.4 4E-06 8.7E-11 70.9 11.1 120 195-349 52-183 (219)
146 PRK11727 23S rRNA mA1618 methy 98.4 2.2E-06 4.7E-11 78.2 9.8 144 194-348 114-293 (321)
147 TIGR00563 rsmB ribosomal RNA s 98.4 1.7E-06 3.8E-11 82.9 9.7 111 185-300 231-374 (426)
148 COG3963 Phospholipid N-methylt 98.4 2.5E-06 5.5E-11 68.5 8.9 110 182-296 38-158 (194)
149 PRK14904 16S rRNA methyltransf 98.4 2.8E-06 6E-11 82.0 10.7 105 192-299 248-382 (445)
150 PRK14902 16S rRNA methyltransf 98.4 2.3E-06 5E-11 82.6 10.0 104 192-298 248-383 (444)
151 PF10294 Methyltransf_16: Puta 98.3 1.3E-06 2.9E-11 73.0 6.9 102 192-298 43-160 (173)
152 PRK13168 rumA 23S rRNA m(5)U19 98.3 6.1E-06 1.3E-10 79.6 12.4 98 182-292 287-398 (443)
153 PF02390 Methyltransf_4: Putat 98.3 1.8E-06 4E-11 73.5 7.8 96 196-295 19-134 (195)
154 KOG1541 Predicted protein carb 98.3 1.6E-06 3.5E-11 72.8 7.1 93 194-292 50-158 (270)
155 PRK14896 ksgA 16S ribosomal RN 98.3 3E-06 6.5E-11 75.7 8.0 80 182-266 19-104 (258)
156 PF01596 Methyltransf_3: O-met 98.3 5.9E-07 1.3E-11 76.9 3.1 97 193-298 44-158 (205)
157 PF08704 GCD14: tRNA methyltra 98.3 4.8E-06 1E-10 73.1 8.8 103 183-297 31-149 (247)
158 TIGR00478 tly hemolysin TlyA f 98.2 1.6E-05 3.4E-10 69.2 11.9 145 182-349 64-219 (228)
159 PRK14901 16S rRNA methyltransf 98.2 6.5E-06 1.4E-10 79.1 10.3 104 192-298 250-388 (434)
160 PF05185 PRMT5: PRMT5 arginine 98.2 1.5E-06 3.2E-11 83.2 5.8 129 154-292 150-294 (448)
161 KOG2940 Predicted methyltransf 98.2 2.3E-06 4.9E-11 72.2 6.1 142 193-346 71-226 (325)
162 TIGR00755 ksgA dimethyladenosi 98.2 3.4E-06 7.5E-11 75.1 7.7 90 182-279 19-116 (253)
163 KOG1331 Predicted methyltransf 98.2 3.3E-06 7.1E-11 74.0 7.2 96 193-295 44-144 (293)
164 TIGR00446 nop2p NOL1/NOP2/sun 98.2 8.5E-06 1.8E-10 73.0 9.7 105 192-299 69-204 (264)
165 PRK00274 ksgA 16S ribosomal RN 98.2 3.8E-06 8.2E-11 75.6 6.7 80 182-266 32-118 (272)
166 COG4122 Predicted O-methyltran 98.2 4.7E-06 1E-10 71.4 6.6 100 192-300 57-171 (219)
167 PRK14903 16S rRNA methyltransf 98.2 1.3E-05 2.9E-10 76.7 10.3 106 192-300 235-372 (431)
168 PF09243 Rsm22: Mitochondrial 98.1 9E-06 1.9E-10 73.1 8.4 102 194-300 33-145 (274)
169 KOG1500 Protein arginine N-met 98.1 4.4E-06 9.6E-11 74.3 6.1 95 194-292 177-280 (517)
170 PLN02476 O-methyltransferase 98.1 5.1E-06 1.1E-10 74.1 6.5 99 192-299 116-232 (278)
171 PTZ00338 dimethyladenosine tra 98.1 5.2E-06 1.1E-10 75.2 6.6 88 182-274 26-122 (294)
172 PF08123 DOT1: Histone methyla 98.1 4.8E-06 1E-10 71.2 5.5 104 182-293 32-157 (205)
173 PRK04148 hypothetical protein; 98.1 1.9E-05 4.1E-10 62.2 8.2 90 194-296 16-111 (134)
174 COG0421 SpeE Spermidine syntha 98.1 7.2E-06 1.6E-10 73.4 6.5 97 193-293 75-189 (282)
175 COG2263 Predicted RNA methylas 98.0 9.2E-06 2E-10 67.0 5.9 86 194-280 45-136 (198)
176 KOG1499 Protein arginine N-met 98.0 5.6E-06 1.2E-10 74.7 4.7 94 194-291 60-164 (346)
177 PLN02823 spermine synthase 98.0 9.5E-06 2.1E-10 74.7 5.9 96 193-292 102-218 (336)
178 PRK11783 rlmL 23S rRNA m(2)G24 98.0 1.1E-05 2.3E-10 82.2 6.7 96 194-293 538-655 (702)
179 PRK10909 rsmD 16S rRNA m(2)G96 98.0 1.5E-05 3.2E-10 68.0 6.4 96 194-297 53-161 (199)
180 PRK15128 23S rRNA m(5)C1962 me 97.9 3E-05 6.4E-10 73.3 8.1 98 194-295 220-340 (396)
181 COG0220 Predicted S-adenosylme 97.9 4.4E-05 9.5E-10 66.2 8.1 96 196-295 50-165 (227)
182 KOG0820 Ribosomal RNA adenine 97.9 2.2E-05 4.8E-10 68.2 6.0 73 182-258 48-129 (315)
183 COG2521 Predicted archaeal met 97.9 9.7E-05 2.1E-09 62.9 9.6 127 192-348 132-278 (287)
184 PLN02589 caffeoyl-CoA O-methyl 97.9 2.6E-05 5.6E-10 68.7 6.4 98 193-299 78-194 (247)
185 PRK00536 speE spermidine synth 97.9 5.1E-05 1.1E-09 67.2 7.9 87 193-292 71-169 (262)
186 PF01564 Spermine_synth: Sperm 97.8 1.7E-05 3.6E-10 70.2 4.4 99 193-294 75-191 (246)
187 KOG1661 Protein-L-isoaspartate 97.8 2.3E-05 5E-10 65.5 4.8 99 183-292 71-191 (237)
188 KOG3987 Uncharacterized conser 97.8 2.9E-06 6.2E-11 70.5 -0.6 148 193-349 111-262 (288)
189 PRK03522 rumB 23S rRNA methylu 97.8 4.2E-05 9.1E-10 70.4 6.8 64 194-259 173-247 (315)
190 PF07942 N2227: N2227-like pro 97.8 0.00045 9.8E-09 61.3 12.6 134 194-347 56-242 (270)
191 PRK11760 putative 23S rRNA C24 97.8 0.0012 2.5E-08 60.2 15.3 96 192-298 209-308 (357)
192 PF04816 DUF633: Family of unk 97.7 0.00012 2.6E-09 62.7 7.6 124 198-358 1-138 (205)
193 TIGR00479 rumA 23S rRNA (uraci 97.7 0.00013 2.7E-09 70.4 8.6 90 192-292 290-394 (431)
194 KOG3191 Predicted N6-DNA-methy 97.7 0.00057 1.2E-08 56.0 10.8 121 195-346 44-192 (209)
195 COG0293 FtsJ 23S rRNA methylas 97.7 0.00049 1.1E-08 58.2 10.8 110 182-299 34-164 (205)
196 PF01728 FtsJ: FtsJ-like methy 97.6 7.7E-05 1.7E-09 62.9 5.1 105 182-294 10-139 (181)
197 KOG2904 Predicted methyltransf 97.6 9.7E-05 2.1E-09 64.4 5.0 67 193-259 147-229 (328)
198 PF02527 GidB: rRNA small subu 97.6 9.4E-05 2E-09 62.2 4.8 89 197-294 51-148 (184)
199 PRK00050 16S rRNA m(4)C1402 me 97.6 8.5E-05 1.8E-09 67.0 4.8 76 182-259 9-97 (296)
200 PRK01544 bifunctional N5-gluta 97.6 0.00018 3.9E-09 70.4 7.4 97 194-294 347-462 (506)
201 PF03141 Methyltransf_29: Puta 97.6 7.1E-05 1.5E-09 70.8 4.3 98 194-298 117-223 (506)
202 COG4301 Uncharacterized conser 97.6 0.00041 9E-09 59.5 8.3 98 193-293 77-192 (321)
203 COG0030 KsgA Dimethyladenosine 97.5 0.00026 5.5E-09 62.3 7.2 82 182-268 20-110 (259)
204 TIGR00095 RNA methyltransferas 97.5 0.00014 2.9E-09 61.8 4.7 96 194-297 49-161 (189)
205 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.5 4.5E-05 9.8E-10 67.2 1.6 148 182-347 44-239 (256)
206 COG5459 Predicted rRNA methyla 97.5 0.00015 3.2E-09 65.3 4.7 102 195-299 114-230 (484)
207 KOG3115 Methyltransferase-like 97.4 0.00013 2.8E-09 60.7 3.6 101 194-297 60-186 (249)
208 KOG2798 Putative trehalase [Ca 97.4 0.0036 7.8E-08 55.8 12.4 135 195-348 151-338 (369)
209 PF09339 HTH_IclR: IclR helix- 97.4 6.4E-05 1.4E-09 49.3 1.3 46 38-86 6-51 (52)
210 TIGR02085 meth_trns_rumB 23S r 97.4 0.0004 8.7E-09 65.5 6.7 89 194-292 233-332 (374)
211 COG0357 GidB Predicted S-adeno 97.4 0.00031 6.7E-09 60.2 5.2 120 195-349 68-197 (215)
212 COG3897 Predicted methyltransf 97.2 0.00092 2E-08 55.5 6.3 102 194-301 79-186 (218)
213 TIGR00027 mthyl_TIGR00027 meth 97.2 0.0045 9.7E-08 55.3 10.8 164 174-345 63-248 (260)
214 COG4076 Predicted RNA methylas 97.2 0.00059 1.3E-08 56.2 4.6 96 196-296 34-137 (252)
215 COG1889 NOP1 Fibrillarin-like 97.1 0.042 9.1E-07 46.1 14.9 141 192-358 74-228 (231)
216 KOG3201 Uncharacterized conser 97.1 0.00024 5.2E-09 57.0 1.4 98 195-297 30-143 (201)
217 KOG3420 Predicted RNA methylas 97.1 0.00052 1.1E-08 54.0 3.2 68 194-262 48-124 (185)
218 PF12840 HTH_20: Helix-turn-he 97.0 0.00037 8E-09 47.3 1.9 55 29-87 4-58 (61)
219 PF00398 RrnaAD: Ribosomal RNA 97.0 0.001 2.2E-08 59.6 5.1 93 182-282 20-122 (262)
220 COG4262 Predicted spermidine s 97.0 0.0014 3.1E-08 59.5 5.6 92 193-293 288-406 (508)
221 PRK04338 N(2),N(2)-dimethylgua 97.0 0.0021 4.5E-08 60.6 7.1 90 195-293 58-157 (382)
222 smart00550 Zalpha Z-DNA-bindin 96.8 0.0016 3.5E-08 45.1 3.9 60 35-103 6-66 (68)
223 COG1092 Predicted SAM-dependen 96.8 0.0017 3.6E-08 61.0 5.1 99 194-297 217-339 (393)
224 PF02475 Met_10: Met-10+ like- 96.8 0.00082 1.8E-08 57.2 2.7 86 192-283 99-194 (200)
225 KOG4589 Cell division protein 96.8 0.0087 1.9E-07 49.4 8.4 72 183-259 59-143 (232)
226 TIGR02143 trmA_only tRNA (urac 96.8 0.0017 3.8E-08 60.6 4.8 51 196-248 199-256 (353)
227 smart00346 HTH_ICLR helix_turn 96.8 0.0013 2.9E-08 48.4 3.3 57 38-104 8-64 (91)
228 COG0500 SmtA SAM-dependent met 96.8 0.0069 1.5E-07 48.9 7.9 96 198-300 52-161 (257)
229 KOG1709 Guanidinoacetate methy 96.7 0.008 1.7E-07 50.8 7.7 102 193-299 100-211 (271)
230 PRK11933 yebU rRNA (cytosine-C 96.7 0.011 2.5E-07 57.0 9.6 105 192-299 111-247 (470)
231 PF13679 Methyltransf_32: Meth 96.6 0.0026 5.7E-08 51.2 4.4 83 193-279 24-122 (141)
232 PRK10141 DNA-binding transcrip 96.6 0.0022 4.9E-08 49.5 3.6 57 27-87 8-64 (117)
233 PF01022 HTH_5: Bacterial regu 96.6 0.001 2.2E-08 42.5 1.4 44 37-85 4-47 (47)
234 PF03059 NAS: Nicotianamine sy 96.6 0.0031 6.6E-08 56.3 4.9 96 194-293 120-229 (276)
235 PF09445 Methyltransf_15: RNA 96.6 0.00046 1E-08 56.5 -0.3 62 196-259 1-76 (163)
236 PF07091 FmrO: Ribosomal RNA m 96.5 0.013 2.8E-07 51.1 8.0 101 192-297 103-211 (251)
237 PF01170 UPF0020: Putative RNA 96.5 0.0029 6.2E-08 53.2 4.0 99 183-283 19-143 (179)
238 COG4798 Predicted methyltransf 96.5 0.043 9.3E-07 45.8 10.3 140 192-348 46-206 (238)
239 TIGR02431 pcaR_pcaU beta-ketoa 96.4 0.0028 6.1E-08 56.2 3.5 56 38-105 12-67 (248)
240 COG2384 Predicted SAM-dependen 96.4 0.065 1.4E-06 45.7 11.3 86 194-283 16-112 (226)
241 COG1414 IclR Transcriptional r 96.4 0.0029 6.2E-08 56.0 3.3 58 38-105 7-64 (246)
242 PRK05031 tRNA (uracil-5-)-meth 96.3 0.0019 4.2E-08 60.5 2.1 51 196-248 208-265 (362)
243 PRK11569 transcriptional repre 96.3 0.0033 7.2E-08 56.6 3.5 58 38-105 31-88 (274)
244 PRK10163 DNA-binding transcrip 96.3 0.0035 7.6E-08 56.4 3.6 58 38-105 28-85 (271)
245 PF02082 Rrf2: Transcriptional 96.3 0.0068 1.5E-07 43.9 4.3 49 49-106 24-72 (83)
246 KOG1663 O-methyltransferase [S 96.3 0.013 2.8E-07 50.2 6.4 98 194-300 73-188 (237)
247 COG1189 Predicted rRNA methyla 96.3 0.058 1.3E-06 46.6 10.3 149 182-349 68-226 (245)
248 PF01269 Fibrillarin: Fibrilla 96.2 0.014 3E-07 50.0 6.3 132 192-350 71-215 (229)
249 COG3315 O-Methyltransferase in 96.2 0.03 6.6E-07 50.9 8.9 147 194-346 92-263 (297)
250 KOG1269 SAM-dependent methyltr 96.1 0.0045 9.7E-08 57.6 3.4 100 194-299 110-220 (364)
251 TIGR01444 fkbM_fam methyltrans 96.1 0.0034 7.4E-08 50.4 2.3 51 197-247 1-58 (143)
252 PF02384 N6_Mtase: N-6 DNA Met 96.1 0.011 2.5E-07 54.2 6.0 99 192-294 44-183 (311)
253 TIGR02987 met_A_Alw26 type II 96.1 0.015 3.3E-07 57.5 6.9 66 194-259 31-119 (524)
254 PRK11783 rlmL 23S rRNA m(2)G24 96.1 0.031 6.6E-07 57.3 9.3 100 193-295 189-348 (702)
255 PHA00738 putative HTH transcri 96.0 0.007 1.5E-07 45.3 3.3 48 36-87 13-60 (108)
256 PRK09834 DNA-binding transcrip 96.0 0.0061 1.3E-07 54.6 3.6 59 38-106 14-72 (263)
257 cd00092 HTH_CRP helix_turn_hel 96.0 0.03 6.6E-07 38.3 6.3 44 49-103 24-67 (67)
258 PRK15090 DNA-binding transcrip 96.0 0.0067 1.5E-07 54.1 3.6 56 39-105 18-73 (257)
259 KOG2915 tRNA(1-methyladenosine 95.9 0.093 2E-06 46.2 10.2 117 170-297 78-213 (314)
260 PF01978 TrmB: Sugar-specific 95.9 0.0028 6E-08 44.0 0.8 47 37-87 10-56 (68)
261 PF03602 Cons_hypoth95: Conser 95.9 0.0051 1.1E-07 51.8 2.4 97 194-298 42-156 (183)
262 PF10672 Methyltrans_SAM: S-ad 95.9 0.0082 1.8E-07 54.1 3.8 98 194-295 123-239 (286)
263 PF08461 HTH_12: Ribonuclease 95.9 0.0061 1.3E-07 41.9 2.3 58 40-105 3-62 (66)
264 PF11312 DUF3115: Protein of u 95.8 0.0078 1.7E-07 54.1 3.3 101 195-298 87-246 (315)
265 COG1041 Predicted DNA modifica 95.8 0.061 1.3E-06 49.3 9.0 99 192-295 195-311 (347)
266 PF13578 Methyltransf_24: Meth 95.8 0.004 8.8E-08 47.3 1.2 89 199-293 1-104 (106)
267 PRK10857 DNA-binding transcrip 95.8 0.02 4.3E-07 47.2 5.2 48 49-105 24-71 (164)
268 PF07757 AdoMet_MTase: Predict 95.7 0.0084 1.8E-07 44.9 2.6 32 193-226 57-88 (112)
269 smart00419 HTH_CRP helix_turn_ 95.7 0.02 4.4E-07 36.3 4.1 35 49-86 7-41 (48)
270 PLN02668 indole-3-acetate carb 95.7 0.19 4E-06 47.3 12.0 73 194-266 63-176 (386)
271 PF13412 HTH_24: Winged helix- 95.6 0.0087 1.9E-07 38.2 2.2 44 37-84 5-48 (48)
272 COG2265 TrmA SAM-dependent met 95.6 0.03 6.6E-07 53.6 6.7 90 192-292 291-394 (432)
273 PF14947 HTH_45: Winged helix- 95.6 0.0097 2.1E-07 42.4 2.5 55 41-109 12-66 (77)
274 PF13463 HTH_27: Winged helix 95.5 0.015 3.2E-07 40.1 3.1 51 48-104 16-67 (68)
275 COG4627 Uncharacterized protei 95.5 0.03 6.4E-07 44.9 5.0 42 252-296 47-88 (185)
276 KOG2918 Carboxymethyl transfer 95.4 0.11 2.4E-06 46.6 9.0 148 192-348 85-278 (335)
277 TIGR00308 TRM1 tRNA(guanine-26 95.4 0.041 8.9E-07 51.7 6.6 91 195-294 45-147 (374)
278 PF13601 HTH_34: Winged helix 95.2 0.0032 6.9E-08 45.2 -1.2 67 36-107 1-67 (80)
279 PF04989 CmcI: Cephalosporin h 95.1 0.097 2.1E-06 44.5 7.3 98 194-297 32-150 (206)
280 PF01861 DUF43: Protein of unk 95.0 0.22 4.8E-06 43.3 9.4 127 194-350 44-181 (243)
281 COG3355 Predicted transcriptio 95.0 0.025 5.5E-07 43.9 3.3 49 37-88 29-77 (126)
282 TIGR02010 IscR iron-sulfur clu 94.7 0.048 1E-06 43.5 4.2 49 49-106 24-72 (135)
283 COG1959 Predicted transcriptio 94.7 0.044 9.5E-07 44.5 4.0 49 49-106 24-72 (150)
284 PF05971 Methyltransf_10: Prot 94.6 0.36 7.8E-06 43.7 10.0 75 193-268 101-193 (299)
285 PRK06474 hypothetical protein; 94.5 0.047 1E-06 45.7 4.0 76 29-107 5-81 (178)
286 PF03141 Methyltransf_29: Puta 94.4 0.13 2.8E-06 49.3 6.9 94 193-294 364-467 (506)
287 KOG1099 SAM-dependent methyltr 94.3 0.091 2E-06 45.0 5.3 95 191-292 38-161 (294)
288 KOG2793 Putative N2,N2-dimethy 94.3 0.22 4.8E-06 43.7 7.9 99 194-298 86-203 (248)
289 PF04703 FaeA: FaeA-like prote 94.3 0.027 5.9E-07 38.0 1.7 46 39-87 4-49 (62)
290 PF08220 HTH_DeoR: DeoR-like h 94.3 0.068 1.5E-06 35.5 3.6 44 40-87 5-48 (57)
291 PF01726 LexA_DNA_bind: LexA D 94.3 0.036 7.9E-07 37.9 2.3 38 48-87 23-60 (65)
292 TIGR00006 S-adenosyl-methyltra 94.2 0.071 1.5E-06 48.4 4.8 64 182-247 10-79 (305)
293 PF03514 GRAS: GRAS domain fam 94.2 0.38 8.3E-06 45.4 9.8 112 182-300 100-249 (374)
294 PRK03902 manganese transport t 94.1 0.069 1.5E-06 42.9 4.0 50 48-108 20-69 (142)
295 KOG2352 Predicted spermine/spe 94.0 0.19 4.1E-06 48.0 7.2 97 196-296 50-163 (482)
296 COG4742 Predicted transcriptio 93.9 0.062 1.3E-06 47.3 3.5 65 31-109 9-73 (260)
297 COG2520 Predicted methyltransf 93.8 0.1 2.2E-06 48.1 5.0 97 193-299 187-294 (341)
298 PF12802 MarR_2: MarR family; 93.8 0.038 8.2E-07 37.2 1.6 46 39-87 9-55 (62)
299 TIGR00738 rrf2_super rrf2 fami 93.7 0.079 1.7E-06 41.9 3.6 49 49-106 24-72 (132)
300 PRK11920 rirA iron-responsive 93.7 0.097 2.1E-06 42.7 4.1 62 30-105 9-70 (153)
301 PRK06266 transcription initiat 93.7 0.12 2.7E-06 43.1 4.8 47 37-87 24-70 (178)
302 PF09012 FeoC: FeoC like trans 93.6 0.05 1.1E-06 37.8 2.1 44 40-87 5-48 (69)
303 PF01795 Methyltransf_5: MraW 93.5 0.089 1.9E-06 47.8 3.9 63 182-246 10-78 (310)
304 KOG4058 Uncharacterized conser 93.4 0.16 3.4E-06 40.4 4.7 107 182-299 62-177 (199)
305 COG4189 Predicted transcriptio 93.4 0.091 2E-06 44.8 3.6 56 27-86 15-70 (308)
306 smart00347 HTH_MARR helix_turn 93.3 0.083 1.8E-06 39.2 3.1 47 37-87 12-58 (101)
307 TIGR02944 suf_reg_Xantho FeS a 93.2 0.097 2.1E-06 41.3 3.5 46 49-103 24-69 (130)
308 TIGR02702 SufR_cyano iron-sulf 93.2 0.13 2.8E-06 44.1 4.4 67 39-109 5-71 (203)
309 PRK11014 transcriptional repre 93.2 0.12 2.6E-06 41.5 3.9 61 30-103 9-69 (141)
310 KOG2730 Methylase [General fun 93.1 0.024 5.2E-07 48.1 -0.2 53 194-248 94-154 (263)
311 PRK11050 manganese transport r 93.1 0.11 2.4E-06 42.3 3.7 57 40-108 42-98 (152)
312 KOG0822 Protein kinase inhibit 93.1 0.4 8.6E-06 46.2 7.7 127 155-291 333-475 (649)
313 PF04967 HTH_10: HTH DNA bindi 93.1 0.19 4.1E-06 32.8 4.0 42 29-77 6-47 (53)
314 COG0742 N6-adenine-specific me 93.1 0.29 6.2E-06 41.0 6.1 100 194-298 43-157 (187)
315 TIGR00122 birA_repr_reg BirA b 93.0 0.11 2.4E-06 36.0 3.1 54 38-104 3-56 (69)
316 PF12692 Methyltransf_17: S-ad 93.0 0.38 8.3E-06 38.4 6.3 54 195-248 29-82 (160)
317 smart00345 HTH_GNTR helix_turn 92.9 0.22 4.8E-06 32.9 4.4 36 49-87 18-54 (60)
318 cd07377 WHTH_GntR Winged helix 92.9 0.31 6.7E-06 32.9 5.2 34 51-87 26-59 (66)
319 PF01047 MarR: MarR family; I 92.8 0.046 9.9E-07 36.5 0.9 43 41-87 9-51 (59)
320 smart00418 HTH_ARSR helix_turn 92.8 0.2 4.2E-06 33.6 4.1 42 41-87 3-44 (66)
321 COG0116 Predicted N6-adenine-s 92.7 0.19 4.1E-06 46.8 5.0 99 192-293 189-343 (381)
322 PF08279 HTH_11: HTH domain; 92.7 0.15 3.2E-06 33.5 3.2 39 40-81 5-43 (55)
323 COG2345 Predicted transcriptio 92.5 0.13 2.7E-06 44.2 3.3 61 39-107 15-79 (218)
324 PF01638 HxlR: HxlR-like helix 92.5 0.088 1.9E-06 38.7 2.1 62 41-109 11-73 (90)
325 PF04072 LCM: Leucine carboxyl 92.5 0.12 2.5E-06 43.6 3.1 85 193-277 77-182 (183)
326 TIGR02337 HpaR homoprotocatech 92.5 0.24 5.1E-06 38.3 4.6 66 37-109 30-96 (118)
327 PF05958 tRNA_U5-meth_tr: tRNA 92.4 0.11 2.3E-06 48.7 3.0 60 182-246 187-253 (352)
328 PF03492 Methyltransf_7: SAM d 92.4 0.96 2.1E-05 42.0 9.2 148 192-342 14-248 (334)
329 cd00090 HTH_ARSR Arsenical Res 92.4 0.18 4E-06 34.9 3.6 44 39-87 11-54 (78)
330 COG1321 TroR Mn-dependent tran 92.2 0.2 4.3E-06 40.8 4.0 50 48-108 22-71 (154)
331 PF06859 Bin3: Bicoid-interact 92.1 0.14 3E-06 38.8 2.6 86 253-348 2-93 (110)
332 TIGR01884 cas_HTH CRISPR locus 91.9 0.19 4E-06 43.1 3.8 58 37-104 145-202 (203)
333 smart00420 HTH_DEOR helix_turn 91.9 0.23 5E-06 31.8 3.4 43 41-87 6-48 (53)
334 TIGR00373 conserved hypothetic 91.9 0.16 3.5E-06 41.5 3.2 46 38-87 17-62 (158)
335 KOG2187 tRNA uracil-5-methyltr 91.8 0.21 4.4E-06 48.0 4.1 53 192-246 381-440 (534)
336 PF01325 Fe_dep_repress: Iron 91.1 0.25 5.3E-06 33.2 2.9 37 48-87 20-56 (60)
337 PF00325 Crp: Bacterial regula 91.1 0.22 4.7E-06 28.7 2.2 31 50-83 2-32 (32)
338 KOG3924 Putative protein methy 91.0 0.54 1.2E-05 43.7 5.9 109 183-299 183-313 (419)
339 PF06163 DUF977: Bacterial pro 91.0 0.25 5.4E-06 38.1 3.1 51 33-87 10-60 (127)
340 COG0144 Sun tRNA and rRNA cyto 90.8 2.5 5.5E-05 39.6 10.4 107 192-301 154-295 (355)
341 smart00529 HTH_DTXR Helix-turn 90.7 0.31 6.6E-06 36.0 3.4 45 53-108 2-46 (96)
342 cd07153 Fur_like Ferric uptake 90.7 0.24 5.3E-06 38.1 3.0 51 37-87 3-55 (116)
343 COG4190 Predicted transcriptio 90.5 0.3 6.5E-06 37.9 3.1 51 33-87 62-112 (144)
344 TIGR01610 phage_O_Nterm phage 90.5 0.48 1E-05 35.1 4.3 45 49-103 46-90 (95)
345 PRK03573 transcriptional regul 90.4 0.26 5.6E-06 39.6 2.9 64 40-109 36-100 (144)
346 PRK11512 DNA-binding transcrip 90.2 0.26 5.7E-06 39.6 2.8 64 39-109 44-108 (144)
347 smart00344 HTH_ASNC helix_turn 90.2 0.24 5.1E-06 37.6 2.4 47 36-86 4-50 (108)
348 KOG1562 Spermidine synthase [A 89.5 0.42 9.1E-06 42.7 3.7 101 192-296 119-238 (337)
349 COG0275 Predicted S-adenosylme 89.4 0.53 1.2E-05 42.3 4.3 63 182-246 13-82 (314)
350 COG2512 Predicted membrane-ass 88.9 0.28 6.1E-06 43.5 2.2 48 37-87 197-244 (258)
351 COG3432 Predicted transcriptio 88.6 0.16 3.4E-06 37.4 0.4 54 48-109 29-82 (95)
352 PRK14165 winged helix-turn-hel 88.1 0.69 1.5E-05 39.9 4.0 53 49-109 20-72 (217)
353 PF10354 DUF2431: Domain of un 88.0 5.4 0.00012 32.9 9.2 120 200-348 2-153 (166)
354 PRK09424 pntA NAD(P) transhydr 87.9 2.2 4.7E-05 41.9 7.8 95 194-295 164-286 (509)
355 PF02636 Methyltransf_28: Puta 87.9 1 2.2E-05 39.9 5.3 36 195-230 19-62 (252)
356 COG1064 AdhP Zn-dependent alco 87.9 2.6 5.7E-05 38.9 7.9 93 192-297 164-262 (339)
357 COG1255 Uncharacterized protei 87.8 6.5 0.00014 30.0 8.4 87 194-296 13-104 (129)
358 COG1733 Predicted transcriptio 87.7 1.6 3.6E-05 33.8 5.6 79 15-109 12-91 (120)
359 PF02319 E2F_TDP: E2F/DP famil 87.7 0.51 1.1E-05 32.9 2.5 38 49-87 23-63 (71)
360 PF14394 DUF4423: Domain of un 87.5 1.9 4.1E-05 35.8 6.2 63 26-107 23-87 (171)
361 COG1378 Predicted transcriptio 87.4 0.72 1.6E-05 40.8 3.9 60 36-105 17-76 (247)
362 PRK01747 mnmC bifunctional tRN 87.3 1.8 3.8E-05 44.3 7.2 93 194-293 57-205 (662)
363 PRK10742 putative methyltransf 87.2 0.86 1.9E-05 40.0 4.2 74 182-259 76-171 (250)
364 PHA02943 hypothetical protein; 87.2 0.84 1.8E-05 36.5 3.7 44 39-87 15-58 (165)
365 PRK15431 ferrous iron transpor 87.1 0.88 1.9E-05 32.1 3.4 42 42-87 9-50 (78)
366 PF03686 UPF0146: Uncharacteri 86.8 3.6 7.8E-05 32.1 6.9 85 194-294 13-102 (127)
367 PF13730 HTH_36: Helix-turn-he 86.7 0.66 1.4E-05 30.3 2.5 30 51-83 26-55 (55)
368 PF03444 HrcA_DNA-bdg: Winged 86.6 0.92 2E-05 32.0 3.2 49 48-105 21-69 (78)
369 KOG1596 Fibrillarin and relate 86.5 2.1 4.5E-05 37.3 5.9 95 192-294 154-261 (317)
370 KOG1501 Arginine N-methyltrans 86.1 0.52 1.1E-05 44.4 2.3 87 194-281 66-164 (636)
371 PF05732 RepL: Firmicute plasm 86.0 0.99 2.1E-05 37.2 3.7 44 50-104 75-118 (165)
372 PF13545 HTH_Crp_2: Crp-like h 86.0 1.2 2.7E-05 31.1 3.8 36 49-87 27-62 (76)
373 PRK10870 transcriptional repre 86.0 0.98 2.1E-05 37.7 3.8 65 39-109 59-125 (176)
374 PF01189 Nol1_Nop2_Fmu: NOL1/N 85.6 1.3 2.8E-05 40.1 4.6 106 192-300 83-225 (283)
375 COG1568 Predicted methyltransf 85.3 0.87 1.9E-05 40.3 3.2 195 52-283 36-249 (354)
376 cd08283 FDH_like_1 Glutathione 84.9 5.7 0.00012 37.6 8.9 100 192-296 182-308 (386)
377 PRK11169 leucine-responsive tr 84.8 0.85 1.8E-05 37.6 2.9 48 34-85 13-60 (164)
378 cd00315 Cyt_C5_DNA_methylase C 84.6 5.2 0.00011 36.0 8.1 125 197-345 2-141 (275)
379 PRK04214 rbn ribonuclease BN/u 84.5 1.3 2.8E-05 42.4 4.3 46 48-104 308-353 (412)
380 PF11899 DUF3419: Protein of u 84.4 1.4 3.1E-05 41.5 4.4 61 236-299 274-339 (380)
381 TIGR00498 lexA SOS regulatory 84.3 1.2 2.6E-05 37.9 3.7 37 49-87 24-60 (199)
382 COG2933 Predicted SAM-dependen 84.0 3.5 7.5E-05 36.4 6.2 84 192-283 209-295 (358)
383 COG1497 Predicted transcriptio 83.7 0.66 1.4E-05 40.1 1.7 61 49-120 24-84 (260)
384 KOG2651 rRNA adenine N-6-methy 83.5 1.6 3.5E-05 40.5 4.2 44 183-228 143-186 (476)
385 PRK11179 DNA-binding transcrip 83.5 0.97 2.1E-05 36.8 2.6 47 36-86 10-56 (153)
386 TIGR01889 Staph_reg_Sar staphy 83.4 1.5 3.2E-05 33.4 3.5 36 49-87 42-77 (109)
387 PF05430 Methyltransf_30: S-ad 83.3 4 8.6E-05 31.9 5.9 82 238-358 32-122 (124)
388 PF07789 DUF1627: Protein of u 83.3 2.1 4.5E-05 34.1 4.1 36 49-87 5-40 (155)
389 COG4565 CitB Response regulato 83.1 1.3 2.7E-05 37.8 3.1 44 40-86 163-206 (224)
390 PF02002 TFIIE_alpha: TFIIE al 82.9 0.71 1.5E-05 34.9 1.5 44 40-87 18-61 (105)
391 PF00392 GntR: Bacterial regul 82.6 2.9 6.2E-05 28.2 4.3 37 48-87 21-58 (64)
392 PRK13509 transcriptional repre 82.5 1.5 3.2E-05 39.0 3.6 45 39-87 9-53 (251)
393 COG3510 CmcI Cephalosporin hyd 82.5 8.4 0.00018 32.4 7.6 103 194-301 69-187 (237)
394 PF10007 DUF2250: Uncharacteri 82.4 1.3 2.7E-05 32.6 2.5 47 37-87 9-55 (92)
395 PF05584 Sulfolobus_pRN: Sulfo 82.3 1.9 4E-05 29.9 3.2 42 40-86 10-51 (72)
396 KOG2352 Predicted spermine/spe 82.3 2.4 5.2E-05 40.7 5.0 129 164-300 268-422 (482)
397 PF06962 rRNA_methylase: Putat 82.2 1.7 3.7E-05 34.7 3.4 104 220-348 1-126 (140)
398 PF05206 TRM13: Methyltransfer 82.1 2.3 4.9E-05 37.9 4.6 56 192-247 16-83 (259)
399 PF05711 TylF: Macrocin-O-meth 82.0 3.6 7.8E-05 36.3 5.7 97 194-294 74-212 (248)
400 KOG2920 Predicted methyltransf 81.7 1.8 3.9E-05 38.6 3.7 37 193-230 115-152 (282)
401 COG1522 Lrp Transcriptional re 81.5 1.3 2.8E-05 35.8 2.7 48 36-87 9-56 (154)
402 PF12793 SgrR_N: Sugar transpo 81.2 2 4.3E-05 33.1 3.4 36 49-87 18-53 (115)
403 PRK05638 threonine synthase; V 81.1 1.4 3.1E-05 42.6 3.2 60 40-108 376-437 (442)
404 COG1565 Uncharacterized conser 80.2 4.9 0.00011 37.3 6.1 62 162-228 50-119 (370)
405 COG1063 Tdh Threonine dehydrog 79.7 7.3 0.00016 36.4 7.4 93 196-299 170-274 (350)
406 PRK04172 pheS phenylalanyl-tRN 79.7 1.4 3E-05 43.3 2.6 65 37-111 8-72 (489)
407 PF07109 Mg-por_mtran_C: Magne 79.4 7.1 0.00015 28.9 5.6 86 259-359 2-97 (97)
408 PF12324 HTH_15: Helix-turn-he 79.1 1.4 3.1E-05 31.0 1.8 34 40-77 29-62 (77)
409 PRK10906 DNA-binding transcrip 78.8 1.8 3.9E-05 38.5 2.9 45 39-87 9-53 (252)
410 KOG2539 Mitochondrial/chloropl 78.4 4.1 8.9E-05 39.0 5.1 102 194-298 200-319 (491)
411 TIGR02147 Fsuc_second hypothet 78.4 3 6.5E-05 37.4 4.1 46 49-105 136-183 (271)
412 PF04182 B-block_TFIIIC: B-blo 78.3 1.8 3.9E-05 30.4 2.2 47 38-87 5-52 (75)
413 PRK13777 transcriptional regul 78.0 2.3 5.1E-05 35.7 3.2 62 39-109 49-113 (185)
414 PLN02853 Probable phenylalanyl 77.5 2 4.4E-05 41.5 3.0 67 35-111 3-70 (492)
415 PF07381 DUF1495: Winged helix 77.5 4 8.7E-05 29.8 3.8 67 34-108 8-86 (90)
416 COG1510 Predicted transcriptio 76.6 2.4 5.2E-05 34.8 2.7 37 48-87 39-75 (177)
417 PF13384 HTH_23: Homeodomain-l 76.5 1.2 2.6E-05 28.3 0.8 40 37-82 7-46 (50)
418 PTZ00357 methyltransferase; Pr 76.4 18 0.00039 36.7 9.0 129 154-283 639-823 (1072)
419 PRK10411 DNA-binding transcrip 76.2 3.5 7.5E-05 36.3 3.9 44 40-87 9-52 (240)
420 COG5631 Predicted transcriptio 76.0 8.1 0.00018 31.3 5.4 77 23-106 64-147 (199)
421 PRK09802 DNA-binding transcrip 75.5 2.9 6.3E-05 37.5 3.3 46 38-87 20-65 (269)
422 COG0287 TyrA Prephenate dehydr 75.5 7.9 0.00017 34.9 6.0 84 195-283 3-90 (279)
423 PF13518 HTH_28: Helix-turn-he 75.3 2.3 5E-05 27.1 2.0 29 51-82 13-41 (52)
424 PRK11886 bifunctional biotin-- 75.3 3.4 7.3E-05 38.1 3.7 55 39-105 8-63 (319)
425 PF08784 RPA_C: Replication pr 75.0 2.1 4.6E-05 32.0 2.0 47 37-86 49-98 (102)
426 PRK09775 putative DNA-binding 75.0 3.4 7.3E-05 39.9 3.7 41 40-87 5-45 (442)
427 PTZ00326 phenylalanyl-tRNA syn 74.9 2.9 6.3E-05 40.6 3.3 67 36-111 7-73 (494)
428 PRK12423 LexA repressor; Provi 74.8 3.6 7.8E-05 35.1 3.6 37 49-87 24-60 (202)
429 PRK07417 arogenate dehydrogena 74.8 6.8 0.00015 35.3 5.5 79 197-283 2-83 (279)
430 PF02796 HTH_7: Helix-turn-hel 73.9 1.6 3.4E-05 27.3 0.8 23 50-75 21-43 (45)
431 TIGR01321 TrpR trp operon repr 73.7 2.7 5.8E-05 30.9 2.1 42 32-78 39-80 (94)
432 PRK10434 srlR DNA-bindng trans 73.7 2.9 6.3E-05 37.2 2.8 46 38-87 8-53 (256)
433 PF01475 FUR: Ferric uptake re 73.3 2 4.3E-05 33.2 1.4 54 34-87 7-62 (120)
434 PRK00215 LexA repressor; Valid 73.2 3.9 8.5E-05 34.9 3.4 38 48-87 21-58 (205)
435 TIGR02787 codY_Gpos GTP-sensin 72.9 4.9 0.00011 35.0 3.8 45 39-86 187-231 (251)
436 PF00376 MerR: MerR family reg 72.9 4.3 9.4E-05 24.3 2.5 26 52-84 1-26 (38)
437 PHA01634 hypothetical protein 72.9 5.6 0.00012 31.1 3.7 39 194-233 28-67 (156)
438 COG1349 GlpR Transcriptional r 72.8 3.6 7.8E-05 36.5 3.2 45 39-87 9-53 (253)
439 COG3413 Predicted DNA binding 71.6 6.3 0.00014 34.0 4.3 43 28-77 160-202 (215)
440 PF02153 PDH: Prephenate dehyd 71.6 2.4 5.3E-05 37.7 1.8 70 208-283 1-71 (258)
441 PF13404 HTH_AsnC-type: AsnC-t 71.2 2.9 6.2E-05 25.7 1.5 27 36-63 4-30 (42)
442 PRK11639 zinc uptake transcrip 71.2 6.3 0.00014 32.6 4.0 54 34-87 25-80 (169)
443 PRK11534 DNA-binding transcrip 71.0 7.1 0.00015 33.8 4.6 37 48-87 28-64 (224)
444 PF03269 DUF268: Caenorhabditi 69.9 7.4 0.00016 31.8 3.9 101 195-300 2-117 (177)
445 PRK09334 30S ribosomal protein 69.8 5.7 0.00012 28.7 3.0 36 49-87 40-75 (86)
446 smart00531 TFIIE Transcription 69.7 4.5 9.7E-05 32.6 2.8 41 39-83 5-45 (147)
447 PF11599 AviRa: RRNA methyltra 69.6 5 0.00011 34.4 3.1 97 193-292 50-212 (246)
448 PRK07502 cyclohexadienyl dehyd 69.4 13 0.00027 34.0 6.1 84 195-283 6-92 (307)
449 TIGR03338 phnR_burk phosphonat 69.1 9.8 0.00021 32.5 5.0 37 48-87 32-68 (212)
450 PF00165 HTH_AraC: Bacterial r 68.8 4.3 9.3E-05 24.7 2.0 27 49-78 7-33 (42)
451 COG1675 TFA1 Transcription ini 68.5 5.4 0.00012 33.1 3.0 46 38-87 21-66 (176)
452 TIGR03697 NtcA_cyano global ni 68.4 7.2 0.00016 32.6 4.0 35 50-87 143-177 (193)
453 TIGR00675 dcm DNA-methyltransf 68.3 22 0.00047 32.7 7.3 119 198-344 1-137 (315)
454 KOG1098 Putative SAM-dependent 68.2 7.6 0.00016 38.6 4.3 109 182-299 33-162 (780)
455 PF02295 z-alpha: Adenosine de 68.1 2 4.3E-05 29.4 0.4 60 36-103 5-64 (66)
456 PF04445 SAM_MT: Putative SAM- 67.8 3.5 7.6E-05 36.0 1.9 78 182-263 63-162 (234)
457 PF08221 HTH_9: RNA polymerase 67.4 4.3 9.3E-05 27.4 1.9 42 41-86 19-60 (62)
458 PHA02701 ORF020 dsRNA-binding 67.3 5 0.00011 33.4 2.6 48 36-86 5-52 (183)
459 COG1725 Predicted transcriptio 67.2 8.7 0.00019 30.0 3.8 35 50-87 35-69 (125)
460 COG0735 Fur Fe2+/Zn2+ uptake r 67.2 4.8 0.0001 32.4 2.5 54 34-87 20-75 (145)
461 PF09681 Phage_rep_org_N: N-te 66.9 11 0.00023 29.4 4.2 44 49-103 52-95 (121)
462 COG0686 Ald Alanine dehydrogen 66.8 14 0.0003 33.7 5.4 86 195-283 168-260 (371)
463 KOG0024 Sorbitol dehydrogenase 66.7 27 0.00059 32.1 7.2 95 192-298 167-277 (354)
464 PF06969 HemN_C: HemN C-termin 66.5 6.7 0.00014 26.5 2.8 47 49-106 19-65 (66)
465 PF01358 PARP_regulatory: Poly 66.0 7.2 0.00016 35.0 3.5 53 193-245 57-113 (294)
466 PRK10046 dpiA two-component re 65.9 6.1 0.00013 34.1 3.1 45 39-86 166-210 (225)
467 PRK11753 DNA-binding transcrip 65.9 8.6 0.00019 32.7 4.0 35 50-87 168-202 (211)
468 PRK01381 Trp operon repressor; 65.6 5.4 0.00012 29.6 2.2 41 33-78 40-80 (99)
469 TIGR03879 near_KaiC_dom probab 65.2 4.5 9.8E-05 28.2 1.7 33 49-84 31-63 (73)
470 PRK10736 hypothetical protein; 65.0 8.6 0.00019 36.2 4.0 45 38-87 311-355 (374)
471 COG0541 Ffh Signal recognition 65.0 15 0.00033 35.0 5.6 102 194-298 99-225 (451)
472 PRK09391 fixK transcriptional 64.9 17 0.00038 31.5 5.8 34 50-86 179-212 (230)
473 PRK11414 colanic acid/biofilm 64.7 12 0.00025 32.4 4.6 37 48-87 32-68 (221)
474 PRK11642 exoribonuclease R; Pr 64.5 7.6 0.00016 40.6 3.9 48 40-87 24-72 (813)
475 TIGR03433 padR_acidobact trans 64.1 13 0.00028 27.7 4.2 63 41-109 10-81 (100)
476 PRK11161 fumarate/nitrate redu 63.6 9.5 0.00021 33.1 3.9 35 50-87 184-218 (235)
477 PRK09462 fur ferric uptake reg 63.1 9.3 0.0002 30.8 3.5 54 34-87 16-72 (148)
478 PF03297 Ribosomal_S25: S25 ri 62.9 9.2 0.0002 28.8 3.1 36 49-87 58-93 (105)
479 COG0640 ArsR Predicted transcr 62.5 9.8 0.00021 27.6 3.4 54 30-87 20-73 (110)
480 COG1802 GntR Transcriptional r 62.2 18 0.00039 31.4 5.4 37 48-87 37-73 (230)
481 PF13460 NAD_binding_10: NADH( 62.2 82 0.0018 25.7 9.3 132 202-348 4-144 (183)
482 PRK13699 putative methylase; P 62.1 40 0.00087 29.3 7.5 76 239-346 2-95 (227)
483 PF09929 DUF2161: Uncharacteri 62.0 20 0.00043 27.6 4.7 57 29-106 59-115 (118)
484 COG1846 MarR Transcriptional r 61.8 5.8 0.00013 30.2 2.0 67 36-109 23-90 (126)
485 PRK13750 replication protein; 61.6 20 0.00043 31.3 5.2 59 25-87 70-134 (285)
486 PRK08507 prephenate dehydrogen 61.2 16 0.00035 32.7 5.0 79 197-283 2-83 (275)
487 cd01842 SGNH_hydrolase_like_5 61.0 15 0.00033 30.5 4.3 43 253-299 51-103 (183)
488 PF09824 ArsR: ArsR transcript 60.9 6.4 0.00014 31.7 2.0 51 28-86 10-60 (160)
489 PRK13918 CRP/FNR family transc 60.9 12 0.00025 31.6 3.9 34 50-86 149-182 (202)
490 TIGR02698 CopY_TcrY copper tra 60.9 12 0.00026 29.4 3.7 47 37-87 6-56 (130)
491 cd08237 ribitol-5-phosphate_DH 60.5 31 0.00066 31.9 6.9 93 193-295 162-257 (341)
492 PF05331 DUF742: Protein of un 60.1 10 0.00023 29.0 3.0 36 49-87 54-89 (114)
493 PF14502 HTH_41: Helix-turn-he 59.8 19 0.00041 22.8 3.6 35 50-87 6-40 (48)
494 PF01555 N6_N4_Mtase: DNA meth 59.7 16 0.00034 31.2 4.6 38 193-232 190-228 (231)
495 PRK00066 ldh L-lactate dehydro 59.1 51 0.0011 30.3 7.9 100 194-294 5-122 (315)
496 PF09821 AAA_assoc_C: C-termin 58.9 10 0.00023 29.3 2.9 75 55-142 2-76 (120)
497 PRK06719 precorrin-2 dehydroge 58.9 76 0.0016 25.8 8.2 62 194-258 12-76 (157)
498 PTZ00117 malate dehydrogenase; 58.8 87 0.0019 28.8 9.5 66 194-260 4-81 (319)
499 PRK13239 alkylmercury lyase; P 58.7 7.2 0.00016 33.3 2.1 37 38-78 25-61 (206)
500 KOG1209 1-Acyl dihydroxyaceton 58.7 1.2E+02 0.0026 26.3 9.2 125 193-345 5-137 (289)
No 1
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=100.00 E-value=6.2e-40 Score=290.92 Aligned_cols=331 Identities=32% Similarity=0.494 Sum_probs=283.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhcCcchhcccCCCCCCHHHHHHhcC--CCCCCcccHHHHHHHHHccCceeeeccccc
Q 018205 14 EAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALE--INPTKADGLFKLMRLLVHTGFFSTANVQSA 91 (359)
Q Consensus 14 ~~~~~l~~~~~g~~~~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~--~~~~~~~~l~~~L~~L~~~gll~~~~~~~~ 91 (359)
++..+++++++++...+++.+|+||||||+|++++ + ..|+|..+- .+|..+..+.|+||.|++.++++..-..
T Consensus 5 ~~~l~~~~l~~~~~~~~~lk~A~eL~v~d~l~~~~-~--p~~ia~~l~~~~~~~~p~ll~r~lr~L~s~~i~k~~~~~-- 79 (342)
T KOG3178|consen 5 EASLRAMRLANGFALPMVLKAACELGVFDILANAG-S--PSEIASLLPTPKNPEAPVLLDRILRLLVSYSILKCRLVG-- 79 (342)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHcChHHHHHhCC-C--HHHHHHhccCCCCCCChhHHHHHHHHHHHhhhceeeeec--
Confidence 44568999999999999999999999999999842 2 777777766 4555788999999999999999877410
Q ss_pred ccCccceEeccccccccccCC-CCChhhHHhhhcCcccccchhhhhHhhhcCCCchhhhhcCCCChhhhcccCccHHHHH
Q 018205 92 QQQEEEAYALTLTSKLFLKDK-PYCLSPVVLTLTDQVFVNPCHFLSRWFRDNELSAYETANDGTVFWDYMAKNPDFNSIY 170 (359)
Q Consensus 92 ~~~~~~~~~~t~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 170 (359)
.. .|.+++..+++.++. ..++..++........++.|..+.++++.+. .+|..++ |...++|...+......+
T Consensus 80 ---~~-~Y~~~~~~~~~l~~~~~~S~a~~~~~~~~~v~~~~w~~l~dai~eg~-~~~~~~~-G~~l~~~~~~~~~~~~~~ 153 (342)
T KOG3178|consen 80 ---GE-VYSATPVCKYFLKDSGGGSLAPLVLLNTSKVIMNTWQFLKDAILEGG-DAFATAH-GMMLGGYGGADERFSKDF 153 (342)
T ss_pred ---ce-eeeccchhhhheecCCCCchhHHHHHhcccchhhhHHHHHHHHHhcc-cCCcccc-chhhhhhcccccccHHHH
Confidence 12 899999999777443 3577777777777788999999999999987 5788888 878899999999888999
Q ss_pred HHHHhhcccch-HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCCC-CCceEeeCCCCC
Q 018205 171 NQAMASDSQLA-NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPDT-DNLKFIAGDMFQ 248 (359)
Q Consensus 171 ~~~m~~~~~~~-~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-~~v~~~~~d~~~ 248 (359)
+.+|...+... +.+++.+. .+++....||||+|.|..+..+...||+++.+-+|+|.+++.|... +.|+.+.+|+|+
T Consensus 154 ~~sm~~l~~~~~~~il~~~~-Gf~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq 232 (342)
T KOG3178|consen 154 NGSMSFLSTLVMKKILEVYT-GFKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQ 232 (342)
T ss_pred HHHHHHHHHHHHHhhhhhhc-ccccCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceecccccc
Confidence 99999888877 77777776 4778899999999999999999999999999999999999998866 889999999999
Q ss_pred CCCCccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCC-CCcchHHHHHHHhhhhhhhhhc-CCccc
Q 018205 249 SIPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINE-KKEDAQLTEAKLLYDMLMMVAV-RGSER 326 (359)
Q Consensus 249 ~~p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~g~~~ 326 (359)
+.|..|+|++.++||||+|+++.++|++|++.|+| +|.|++.|.+.+. ...+.........+|+.|+.+. +|+.|
T Consensus 233 ~~P~~daI~mkWiLhdwtDedcvkiLknC~~sL~~---~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gker 309 (342)
T KOG3178|consen 233 DTPKGDAIWMKWILHDWTDEDCVKILKNCKKSLPP---GGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKER 309 (342)
T ss_pred cCCCcCeEEEEeecccCChHHHHHHHHHHHHhCCC---CCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceec
Confidence 99999999999999999999999999999999999 9999999998875 2222111123356788888775 59999
Q ss_pred CHHHHHHHHHHcCCceeEEEEeCCceeEEEEeC
Q 018205 327 TEKEWEKLFLDAGFSHFKITPVYGIKSLIEVYP 359 (359)
Q Consensus 327 t~~~~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 359 (359)
+.+||+.++.++||....+.-.+..+++|+++|
T Consensus 310 t~~e~q~l~~~~gF~~~~~~~~~~~~~~Ie~~k 342 (342)
T KOG3178|consen 310 TLKEFQALLPEEGFPVCMVALTAYSYSVIEFHK 342 (342)
T ss_pred cHHHHHhcchhhcCceeEEEeccCccchheeCC
Confidence 999999999999999999999999999999886
No 2
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=100.00 E-value=5e-37 Score=281.13 Aligned_cols=289 Identities=21% Similarity=0.371 Sum_probs=210.0
Q ss_pred HHHHHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccccc
Q 018205 27 VSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSK 106 (359)
Q Consensus 27 ~~~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~ 106 (359)
+.+++|++|+++||||.|.+ +|.|++|||+++|+ +++.++|||++|+++|+|++. +++|++|+.++
T Consensus 2 ~~~~~l~aa~~Lglfd~L~~--gp~t~~eLA~~~~~---~~~~~~~lL~~L~~lgll~~~---------~~~y~~t~~~~ 67 (306)
T TIGR02716 2 IEFSCMKAAIELDLFSHMAE--GPKDLATLAADTGS---VPPRLEMLLETLRQMRVINLE---------DGKWSLTEFAD 67 (306)
T ss_pred chHHHHHHHHHcCcHHHHhc--CCCCHHHHHHHcCC---ChHHHHHHHHHHHhCCCeEec---------CCcEecchhHH
Confidence 35789999999999999987 79999999999999 789999999999999999987 58999999998
Q ss_pred ccccCCCCC----hhhHHhhhcCcccccchhhhhHhhhcCCCchhhhhcCCCChhhhcccCccHHHHHHHHHh-hcccch
Q 018205 107 LFLKDKPYC----LSPVVLTLTDQVFVNPCHFLSRWFRDNELSAYETANDGTVFWDYMAKNPDFNSIYNQAMA-SDSQLA 181 (359)
Q Consensus 107 ~l~~~~~~~----~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~-~~~~~~ 181 (359)
.++.+++.. +.....+... .....|.+|.++++++. +|...+ .+....++. ..|...|. ......
T Consensus 68 ~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~r~~~--~~~~~~------~~~~~~~~~-~~~~~~~~~~~~~~~ 137 (306)
T TIGR02716 68 YMFSPTPKEPNLHQTPVAKAMAF-LADDFYMGLSQAVRGQK--NFKGQV------PYPPVTRED-NLYFEEIHRSNAKFA 137 (306)
T ss_pred hhccCCccchhhhcCchHHHHHH-HHHHHHHhHHHHhcCCc--cccccc------CCCCCCHHH-HHhHHHHHHhcchhH
Confidence 666544321 1122222211 12345789999998543 233222 111111222 23333333 333333
Q ss_pred -HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCC-------CCCceEeeCCCCC-CCCC
Q 018205 182 -NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPD-------TDNLKFIAGDMFQ-SIPP 252 (359)
Q Consensus 182 -~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~d~~~-~~p~ 252 (359)
+.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.+++ .+|++++.+|+++ ++|.
T Consensus 138 ~~~l~~~~~--~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~ 215 (306)
T TIGR02716 138 IQLLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE 215 (306)
T ss_pred HHHHHHHcC--CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCC
Confidence 56667666 67788999999999999999999999999999999888776642 4689999999986 6778
Q ss_pred ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHH-HHhhhhhhhhhcCCcccCHHHH
Q 018205 253 ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEA-KLLYDMLMMVAVRGSERTEKEW 331 (359)
Q Consensus 253 ~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~t~~~~ 331 (359)
+|+|++++++|+|+++++.++|++++++|+| ||+++|.|...++..... +... .......+.... ...++.++|
T Consensus 216 ~D~v~~~~~lh~~~~~~~~~il~~~~~~L~p---gG~l~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~e~ 290 (306)
T TIGR02716 216 ADAVLFCRILYSANEQLSTIMCKKAFDAMRS---GGRLLILDMVIDDPENPN-FDYLSHYILGAGMPFSV-LGFKEQARY 290 (306)
T ss_pred CCEEEeEhhhhcCChHHHHHHHHHHHHhcCC---CCEEEEEEeccCCCCCch-hhHHHHHHHHccccccc-ccCCCHHHH
Confidence 9999999999999988888999999999999 999999998876544221 1111 111111111111 123458999
Q ss_pred HHHHHHcCCceeEEE
Q 018205 332 EKLFLDAGFSHFKIT 346 (359)
Q Consensus 332 ~~ll~~aGf~~~~~~ 346 (359)
.++|+++||+.+++.
T Consensus 291 ~~ll~~aGf~~v~~~ 305 (306)
T TIGR02716 291 KEILESLGYKDVTMV 305 (306)
T ss_pred HHHHHHcCCCeeEec
Confidence 999999999987754
No 3
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=100.00 E-value=9e-37 Score=270.29 Aligned_cols=234 Identities=33% Similarity=0.689 Sum_probs=199.4
Q ss_pred cceEeccccccccccCCC-CChhhHHhhhcCcccccchhhhhHhhhcCCCchhhhhcCCCChhhhcccCccHHHHHHHHH
Q 018205 96 EEAYALTLTSKLFLKDKP-YCLSPVVLTLTDQVFVNPCHFLSRWFRDNELSAYETANDGTVFWDYMAKNPDFNSIYNQAM 174 (359)
Q Consensus 96 ~~~~~~t~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m 174 (359)
+++|++|+.++.|+.+++ .++..++.+......+..|.+|.+++++|. ++|...+ |.++|+++.++++..+.|+.+|
T Consensus 3 ~~~y~~t~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~v~~g~-~~~~~~~-g~~~~~~~~~~~~~~~~f~~~m 80 (241)
T PF00891_consen 3 GDRYSLTPLSELLLSDHSSPSMRGFVLFMISPELYPAWFRLTEAVRTGK-PPFEKAF-GTPFFEYLEEDPELAKRFNAAM 80 (241)
T ss_dssp TEEEEE-HHHHGGSTTTTTTHHHHHHHHHTCHHHHHGGGGHHHHHHHSS--HHHHHH-SS-HHHHHHCSHHHHHHHHHHH
T ss_pred CCEEeChHHHHHHhCCCCcCcHHHHHHHhcCHHHHHHHHHHHhhhccCC-CHHHHhc-CCcHHHhhhhChHHHHHHHHHH
Confidence 689999999998887765 456666666556678899999999999998 7888888 8889999999999999999999
Q ss_pred hhcccch--HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCCCCCceEeeCCCCCCCCC
Q 018205 175 ASDSQLA--NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPDTDNLKFIAGDMFQSIPP 252 (359)
Q Consensus 175 ~~~~~~~--~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~p~ 252 (359)
...+... ..+...++ +++..+|||||||+|.++..+++++|+++++++|+|++++.+++.+||+++.+|+++++|.
T Consensus 81 ~~~~~~~~~~~~~~~~d--~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~~P~ 158 (241)
T PF00891_consen 81 AEYSRLNAFDILLEAFD--FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFFDPLPV 158 (241)
T ss_dssp HHHHHHHHHHHHHHHST--TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TTTCCSS
T ss_pred Hhhhhcchhhhhhcccc--ccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHHhhhcc
Confidence 9877655 45566666 7888999999999999999999999999999999999999988899999999999988999
Q ss_pred ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCC--cEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHH
Q 018205 253 ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDR--GKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKE 330 (359)
Q Consensus 253 ~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~g--G~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~ 330 (359)
+|+|+++++||+|+++++.++|++++++|+| | |+|+|.|.+.++....+........+|+.|+...+|+.||.+|
T Consensus 159 ~D~~~l~~vLh~~~d~~~~~iL~~~~~al~p---g~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~G~~rt~~e 235 (241)
T PF00891_consen 159 ADVYLLRHVLHDWSDEDCVKILRNAAAALKP---GKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLTGGKERTEEE 235 (241)
T ss_dssp ESEEEEESSGGGS-HHHHHHHHHHHHHHSEE---CTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHHSSS-EEHHH
T ss_pred ccceeeehhhhhcchHHHHHHHHHHHHHhCC---CCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhcCCCCcCHHH
Confidence 9999999999999999999999999999999 8 9999999999988766522223357899999998999999999
Q ss_pred HHHHHH
Q 018205 331 WEKLFL 336 (359)
Q Consensus 331 ~~~ll~ 336 (359)
|++||.
T Consensus 236 ~~~ll~ 241 (241)
T PF00891_consen 236 WEALLK 241 (241)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 999984
No 4
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.77 E-value=1.3e-17 Score=144.00 Aligned_cols=165 Identities=18% Similarity=0.298 Sum_probs=122.7
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCC-CCCC-
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQ-SIPP- 252 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~-~~p~- 252 (359)
+.++.... ..++.+|||||||||.++..+++..+..+++++|+++ |++.|++ ...++|+.+|+.+ ++|+
T Consensus 41 ~~~i~~~~--~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~ 118 (238)
T COG2226 41 RALISLLG--IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDN 118 (238)
T ss_pred HHHHHhhC--CCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCC
Confidence 45555554 3468999999999999999999999989999999965 9998873 1238999999966 6774
Q ss_pred -ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhh-hhhh----------
Q 018205 253 -ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDML-MMVA---------- 320 (359)
Q Consensus 253 -~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---------- 320 (359)
||+|.+++.|++++|. .+.|++++|+|+| ||++++.|...+...... .....+... .+-.
T Consensus 119 sFD~vt~~fglrnv~d~--~~aL~E~~RVlKp---gG~~~vle~~~p~~~~~~---~~~~~~~~~~v~P~~g~~~~~~~~ 190 (238)
T COG2226 119 SFDAVTISFGLRNVTDI--DKALKEMYRVLKP---GGRLLVLEFSKPDNPVLR---KAYILYYFKYVLPLIGKLVAKDAE 190 (238)
T ss_pred ccCEEEeeehhhcCCCH--HHHHHHHHHhhcC---CeEEEEEEcCCCCchhhH---HHHHHHHHHhHhhhhceeeecChH
Confidence 9999999999999866 5699999999999 999999999887664321 111111111 1000
Q ss_pred -------cCCcccCHHHHHHHHHHcCCceeEEEEe-CCceeEEE
Q 018205 321 -------VRGSERTEKEWEKLFLDAGFSHFKITPV-YGIKSLIE 356 (359)
Q Consensus 321 -------~~g~~~t~~~~~~ll~~aGf~~~~~~~~-~~~~~vi~ 356 (359)
..-...+.+++.++++++||+.+..... .+...+..
T Consensus 191 ~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~~~~~~~G~~~l~~ 234 (238)
T COG2226 191 AYEYLAESIRRFPDQEELKQMIEKAGFEEVRYENLTFGIVALHR 234 (238)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcCceEEeeEeeeeeeEEEEE
Confidence 0112468999999999999998886555 33333433
No 5
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.75 E-value=3.6e-18 Score=149.12 Aligned_cols=168 Identities=19% Similarity=0.335 Sum_probs=83.1
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeeccc-ccccCCC------CCCceEeeCCCCC-CCCC
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQ-SIPP 252 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~-~~p~ 252 (359)
+.+++... ..++.+|||+|||+|..+..++++. |+.+++++|++. |++.|++ ..+|+++++|..+ ++++
T Consensus 37 ~~~~~~~~--~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d 114 (233)
T PF01209_consen 37 RKLIKLLG--LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPD 114 (233)
T ss_dssp SHHHHHHT----S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-T
T ss_pred HHHHhccC--CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCC
Confidence 34444444 4567899999999999999999875 678999999965 9998872 3589999999965 5653
Q ss_pred --ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhh-----hhhcC---
Q 018205 253 --ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLM-----MVAVR--- 322 (359)
Q Consensus 253 --~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~--- 322 (359)
||+|++++.+|+++|. .+.|++++++||| ||+++|.|...+........ ...++...+ +...+
T Consensus 115 ~sfD~v~~~fglrn~~d~--~~~l~E~~RVLkP---GG~l~ile~~~p~~~~~~~~--~~~y~~~ilP~~g~l~~~~~~~ 187 (233)
T PF01209_consen 115 NSFDAVTCSFGLRNFPDR--ERALREMYRVLKP---GGRLVILEFSKPRNPLLRAL--YKFYFKYILPLIGRLLSGDREA 187 (233)
T ss_dssp T-EEEEEEES-GGG-SSH--HHHHHHHHHHEEE---EEEEEEEEEEB-SSHHHHHH--HHH-------------------
T ss_pred CceeEEEHHhhHHhhCCH--HHHHHHHHHHcCC---CeEEEEeeccCCCCchhhce--eeeeeccccccccccccccccc
Confidence 9999999999999876 4599999999999 99999999988875321100 001111000 00000
Q ss_pred --------CcccCHHHHHHHHHHcCCceeEEEEe-CCceeEEEEe
Q 018205 323 --------GSERTEKEWEKLFLDAGFSHFKITPV-YGIKSLIEVY 358 (359)
Q Consensus 323 --------g~~~t~~~~~~ll~~aGf~~~~~~~~-~~~~~vi~~~ 358 (359)
....+.+++.++|+++||+.++..+. .+..++..++
T Consensus 188 Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~v~~~~~~~G~~~i~~g~ 232 (233)
T PF01209_consen 188 YRYLPESIRRFPSPEELKELLEEAGFKNVEYRPLTFGIVTIHVGT 232 (233)
T ss_dssp ---------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccC
Confidence 12457899999999999999888776 4555555544
No 6
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.74 E-value=1.1e-16 Score=142.96 Aligned_cols=160 Identities=22% Similarity=0.271 Sum_probs=117.2
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeeccc-ccccCCC---------CCCceEeeCCCCC-CCC--CccEEE
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDLPH-VVPKVPD---------TDNLKFIAGDMFQ-SIP--PADAFF 257 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~-~~~~a~~---------~~~v~~~~~d~~~-~~p--~~D~i~ 257 (359)
..+..+|||||||+|.++..++++. |+.+++++|+++ |++.|++ ..+++++.+|+.+ +++ .||+|+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~ 150 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT 150 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence 4567899999999999999998875 567999999965 8887752 2478999999955 455 399999
Q ss_pred EcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhh--h-h------------hcC
Q 018205 258 FKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLM--M-V------------AVR 322 (359)
Q Consensus 258 ~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~--~-~------------~~~ 322 (359)
+++++|++++. .++|++++++|+| ||.+++.+...++....... ...+....+ . . ..-
T Consensus 151 ~~~~l~~~~d~--~~~l~ei~rvLkp---GG~l~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~y~~l~~s~ 223 (261)
T PLN02233 151 MGYGLRNVVDR--LKAMQEMYRVLKP---GSRVSILDFNKSTQPFTTSM--QEWMIDNVVVPVATGYGLAKEYEYLKSSI 223 (261)
T ss_pred EecccccCCCH--HHHHHHHHHHcCc---CcEEEEEECCCCCcHHHHHH--HHHHHhhhhhHHHHHhCChHHHHHHHHHH
Confidence 99999999765 5699999999999 99999999876654211100 000110000 0 0 000
Q ss_pred CcccCHHHHHHHHHHcCCceeEEEEeC-CceeEEEEe
Q 018205 323 GSERTEKEWEKLFLDAGFSHFKITPVY-GIKSLIEVY 358 (359)
Q Consensus 323 g~~~t~~~~~~ll~~aGf~~~~~~~~~-~~~~vi~~~ 358 (359)
...++.+++.++++++||+.++..... +...+..++
T Consensus 224 ~~f~s~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~~ 260 (261)
T PLN02233 224 NEYLTGEELEKLALEAGFSSAKHYEISGGLMGNLVAT 260 (261)
T ss_pred HhcCCHHHHHHHHHHCCCCEEEEEEcCCCeeEEEEEe
Confidence 135799999999999999999888774 555666554
No 7
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.73 E-value=2.3e-16 Score=138.85 Aligned_cols=168 Identities=15% Similarity=0.228 Sum_probs=122.8
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeecc-cccccCCC------CCCceEeeCCCCC-CCC-
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDLP-HVVPKVPD------TDNLKFIAGDMFQ-SIP- 251 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~-~~~~~a~~------~~~v~~~~~d~~~-~~p- 251 (359)
..+++.+. ..+..+|||+|||+|.++..+++.. |+.+++++|++ .+++.+++ .++++++.+|+.+ +++
T Consensus 35 ~~~l~~l~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 112 (231)
T TIGR02752 35 KDTMKRMN--VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDD 112 (231)
T ss_pred HHHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCC
Confidence 45566665 5667899999999999999999885 67899999995 48776652 3578999999865 344
Q ss_pred -CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHH-Hhhh---------------
Q 018205 252 -PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAK-LLYD--------------- 314 (359)
Q Consensus 252 -~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~-~~~~--------------- 314 (359)
.||+|++..++|++++. .++|+++.++|+| ||.+++.+...++..... ... .++.
T Consensus 113 ~~fD~V~~~~~l~~~~~~--~~~l~~~~~~Lk~---gG~l~~~~~~~~~~~~~~---~~~~~~~~~~~p~~~~~~~~~~~ 184 (231)
T TIGR02752 113 NSFDYVTIGFGLRNVPDY--MQVLREMYRVVKP---GGKVVCLETSQPTIPGFK---QLYFFYFKYIMPLFGKLFAKSYK 184 (231)
T ss_pred CCccEEEEecccccCCCH--HHHHHHHHHHcCc---CeEEEEEECCCCCChHHH---HHHHHHHcChhHHhhHHhcCCHH
Confidence 49999999999998765 5699999999999 999998886654432111 100 0000
Q ss_pred -hhhhhhcCCcccCHHHHHHHHHHcCCceeEEEEeC-CceeEEEEeC
Q 018205 315 -MLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPVY-GIKSLIEVYP 359 (359)
Q Consensus 315 -~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~~~~~~-~~~~vi~~~~ 359 (359)
...+.......++.+++.++|+++||+.+++.... +..+++.++|
T Consensus 185 ~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 185 EYSWLQESTRDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 00000011134688999999999999999998885 7788888775
No 8
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.72 E-value=1.5e-17 Score=147.14 Aligned_cols=154 Identities=15% Similarity=0.176 Sum_probs=114.7
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHC--CCCeEEEeecc-cccccCCC-------CCCceEeeCCCCC-CCCCccEEEEcch
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAF--PGIKCTVLDLP-HVVPKVPD-------TDNLKFIAGDMFQ-SIPPADAFFFKAI 261 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~~-~~~~~a~~-------~~~v~~~~~d~~~-~~p~~D~i~~~~v 261 (359)
.+..+|||||||+|.++..+++.+ |+++++++|++ .|++.|++ ..+++++.+|+.+ +.+.+|+|+++.+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~ 131 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT 131 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecc
Confidence 456799999999999999999874 78999999995 48887762 3478999999965 5567999999999
Q ss_pred hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhh------------------hcCC
Q 018205 262 FHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMV------------------AVRG 323 (359)
Q Consensus 262 l~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~g 323 (359)
+|++++++...++++++++|+| ||.+++.+.......... . .+..+.... ...-
T Consensus 132 l~~~~~~~~~~~l~~i~~~Lkp---gG~l~i~d~~~~~~~~~~---~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 203 (239)
T TIGR00740 132 LQFLPPEDRIALLTKIYEGLNP---NGVLVLSEKFRFEDTKIN---H--LLIDLHHQFKRANGYSELEISQKRTALENVM 203 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcCC---CeEEEEeecccCCCHhHH---H--HHHHHHHHHHHHcCCCHHHHHHHHHHHhccC
Confidence 9999887788999999999999 999999997765443211 0 011110000 0112
Q ss_pred cccCHHHHHHHHHHcCCceeEEEEeCCceeE
Q 018205 324 SERTEKEWEKLFLDAGFSHFKITPVYGIKSL 354 (359)
Q Consensus 324 ~~~t~~~~~~ll~~aGf~~~~~~~~~~~~~v 354 (359)
...|.+++.++++++||+.+++........+
T Consensus 204 ~~~s~~~~~~~l~~aGF~~~~~~~~~~~~~~ 234 (239)
T TIGR00740 204 RTDSIETHKARLKNVGFSHVELWFQCFNFGS 234 (239)
T ss_pred CCCCHHHHHHHHHHcCCchHHHHHHHHhHhH
Confidence 3569999999999999997665444333333
No 9
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.72 E-value=2.5e-17 Score=146.15 Aligned_cols=153 Identities=12% Similarity=0.143 Sum_probs=111.9
Q ss_pred CCCCeEEEeCCCcchHHHHHHHH--CCCCeEEEeecc-cccccCCC-------CCCceEeeCCCCC-CCCCccEEEEcch
Q 018205 193 QGLGSLVDVGGGTGSFARIISEA--FPGIKCTVLDLP-HVVPKVPD-------TDNLKFIAGDMFQ-SIPPADAFFFKAI 261 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~--~p~~~~~~~D~~-~~~~~a~~-------~~~v~~~~~d~~~-~~p~~D~i~~~~v 261 (359)
.+..+|||||||+|..+..+++. +|+.+++++|++ .|++.|++ ..+++++++|+.+ +.+.+|+|+++.+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~ 134 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT 134 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhH
Confidence 46689999999999999998884 588999999995 49988762 3479999999965 4567999999999
Q ss_pred hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchH-HHHHHHh----hhhhh--hh-----hcC-CcccCH
Q 018205 262 FHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQ-LTEAKLL----YDMLM--MV-----AVR-GSERTE 328 (359)
Q Consensus 262 l~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~-~~~~~~~----~~~~~--~~-----~~~-g~~~t~ 328 (359)
+|++++++...++++++++|+| ||.+++.|........... +...... .++.. .. ..+ -...|.
T Consensus 135 l~~l~~~~~~~~l~~i~~~Lkp---GG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~ 211 (247)
T PRK15451 135 LQFLEPSERQALLDKIYQGLNP---GGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSV 211 (247)
T ss_pred HHhCCHHHHHHHHHHHHHhcCC---CCEEEEEEecCCCcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCH
Confidence 9999887778899999999999 9999999977654432211 0000000 00000 00 001 123589
Q ss_pred HHHHHHHHHcCCceeEEEEe
Q 018205 329 KEWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 329 ~~~~~ll~~aGf~~~~~~~~ 348 (359)
++..++|+++||+.+..+..
T Consensus 212 ~~~~~~L~~aGF~~v~~~~~ 231 (247)
T PRK15451 212 ETHKARLHKAGFEHSELWFQ 231 (247)
T ss_pred HHHHHHHHHcCchhHHHHHH
Confidence 99999999999997655433
No 10
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.71 E-value=2.1e-16 Score=141.20 Aligned_cols=155 Identities=17% Similarity=0.310 Sum_probs=117.7
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC----CCCceEeeCCCCC-CCC--Cc
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD----TDNLKFIAGDMFQ-SIP--PA 253 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~----~~~v~~~~~d~~~-~~p--~~ 253 (359)
..+++.+. +.+..+|||||||+|..+..+++.+ +.+++++|+++ +++.|++ .+++.+..+|+.+ ++| .|
T Consensus 42 ~~~l~~l~--l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~F 118 (263)
T PTZ00098 42 TKILSDIE--LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTF 118 (263)
T ss_pred HHHHHhCC--CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCe
Confidence 45666666 6778899999999999999998775 67999999955 7776652 4679999999865 455 49
Q ss_pred cEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHH
Q 018205 254 DAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEK 333 (359)
Q Consensus 254 D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ 333 (359)
|+|++..+++|++.++..++|++++++|+| ||.+++.+.......... .. .... .........+.+++.+
T Consensus 119 D~V~s~~~l~h~~~~d~~~~l~~i~r~LkP---GG~lvi~d~~~~~~~~~~---~~--~~~~--~~~~~~~~~~~~~~~~ 188 (263)
T PTZ00098 119 DMIYSRDAILHLSYADKKKLFEKCYKWLKP---NGILLITDYCADKIENWD---EE--FKAY--IKKRKYTLIPIQEYGD 188 (263)
T ss_pred EEEEEhhhHHhCCHHHHHHHHHHHHHHcCC---CcEEEEEEeccccccCcH---HH--HHHH--HHhcCCCCCCHHHHHH
Confidence 999999999888866678899999999999 999999988665432211 10 0000 0011223568999999
Q ss_pred HHHHcCCceeEEEEeC
Q 018205 334 LFLDAGFSHFKITPVY 349 (359)
Q Consensus 334 ll~~aGf~~~~~~~~~ 349 (359)
+|+++||+.++.....
T Consensus 189 ~l~~aGF~~v~~~d~~ 204 (263)
T PTZ00098 189 LIKSCNFQNVVAKDIS 204 (263)
T ss_pred HHHHCCCCeeeEEeCc
Confidence 9999999999887754
No 11
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.71 E-value=3.3e-16 Score=139.80 Aligned_cols=157 Identities=17% Similarity=0.214 Sum_probs=110.3
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCCCCCceEeeCCCCCCC--CCccEEEE
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPDTDNLKFIAGDMFQSI--PPADAFFF 258 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~~v~~~~~d~~~~~--p~~D~i~~ 258 (359)
..+++.++ ..+..+|||||||+|.++..+++++|+.+++++|+++ +++.|++ .+++++.+|+.+.. +.||+|++
T Consensus 19 ~~ll~~l~--~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~-~~~~~~~~d~~~~~~~~~fD~v~~ 95 (255)
T PRK14103 19 YDLLARVG--AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE-RGVDARTGDVRDWKPKPDTDVVVS 95 (255)
T ss_pred HHHHHhCC--CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh-cCCcEEEcChhhCCCCCCceEEEE
Confidence 56677776 5667899999999999999999999999999999955 8888865 46899999985422 35999999
Q ss_pred cchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHH--Hhhhhhhh---hhcCCcccCHHHHHH
Q 018205 259 KAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAK--LLYDMLMM---VAVRGSERTEKEWEK 333 (359)
Q Consensus 259 ~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~~~g~~~t~~~~~~ 333 (359)
+.++|++++. .+++++++++|+| ||.+++.................. ..+..... ...+....+.+++.+
T Consensus 96 ~~~l~~~~d~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 170 (255)
T PRK14103 96 NAALQWVPEH--ADLLVRWVDELAP---GSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAE 170 (255)
T ss_pred ehhhhhCCCH--HHHHHHHHHhCCC---CcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHH
Confidence 9999999765 5699999999999 898887643211111000000000 00000000 001223568999999
Q ss_pred HHHHcCCceeEEE
Q 018205 334 LFLDAGFSHFKIT 346 (359)
Q Consensus 334 ll~~aGf~~~~~~ 346 (359)
+|+++||++....
T Consensus 171 ~l~~aGf~v~~~~ 183 (255)
T PRK14103 171 LLTDAGCKVDAWE 183 (255)
T ss_pred HHHhCCCeEEEEe
Confidence 9999999854433
No 12
>PLN02244 tocopherol O-methyltransferase
Probab=99.66 E-value=2.2e-15 Score=139.60 Aligned_cols=151 Identities=17% Similarity=0.256 Sum_probs=108.5
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCC-CCC--CccEEEEcch
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQ-SIP--PADAFFFKAI 261 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~-~~p--~~D~i~~~~v 261 (359)
.+..+|||||||+|.++..+++++ +.+++++|++. +++.+++ .++++++.+|+.+ +++ .||+|++..+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 456899999999999999999987 77999999965 7776552 3579999999965 444 4999999999
Q ss_pred hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcch-HHH-HHHHhhhhhhhhhcCCcccCHHHHHHHHHHcC
Q 018205 262 FHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDA-QLT-EAKLLYDMLMMVAVRGSERTEKEWEKLFLDAG 339 (359)
Q Consensus 262 l~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aG 339 (359)
+||+++. .+++++++++|+| ||.+++.+.......... ... .....++............+.++|.++++++|
T Consensus 196 ~~h~~d~--~~~l~e~~rvLkp---GG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aG 270 (340)
T PLN02244 196 GEHMPDK--RKFVQELARVAAP---GGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLG 270 (340)
T ss_pred hhccCCH--HHHHHHHHHHcCC---CcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCC
Confidence 9999765 5699999999999 999999886543221110 000 00001111000001112358999999999999
Q ss_pred CceeEEEEeC
Q 018205 340 FSHFKITPVY 349 (359)
Q Consensus 340 f~~~~~~~~~ 349 (359)
|..+++....
T Consensus 271 f~~v~~~d~s 280 (340)
T PLN02244 271 LQDIKTEDWS 280 (340)
T ss_pred CCeeEeeeCc
Confidence 9998887653
No 13
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.64 E-value=1.3e-14 Score=128.25 Aligned_cols=168 Identities=18% Similarity=0.254 Sum_probs=120.6
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCC-CCeEEEeeccc-ccccCCC-------CCCceEeeCCCCC-CCC
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFP-GIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQ-SIP 251 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~-~~p 251 (359)
..++..+. ..+..+|||+|||+|.++..+++.+| +.+++++|++. +++.+++ ..++++..+|+.+ +.+
T Consensus 41 ~~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 118 (239)
T PRK00216 41 RKTIKWLG--VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFP 118 (239)
T ss_pred HHHHHHhC--CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCC
Confidence 34455554 34568999999999999999999987 68999999954 7666552 3578999999865 232
Q ss_pred --CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhh-----hhcC--
Q 018205 252 --PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMM-----VAVR-- 322 (359)
Q Consensus 252 --~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-- 322 (359)
.||+|++++++|++++. ..+|+++.++|+| ||.+++.+...+...... .....+...++ ...+
T Consensus 119 ~~~~D~I~~~~~l~~~~~~--~~~l~~~~~~L~~---gG~li~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 190 (239)
T PRK00216 119 DNSFDAVTIAFGLRNVPDI--DKALREMYRVLKP---GGRLVILEFSKPTNPPLK---KAYDFYLFKVLPLIGKLISKNA 190 (239)
T ss_pred CCCccEEEEecccccCCCH--HHHHHHHHHhccC---CcEEEEEEecCCCchHHH---HHHHHHHHhhhHHHHHHHcCCc
Confidence 49999999999998765 5699999999999 999999887665432110 10000000000 0000
Q ss_pred ----------CcccCHHHHHHHHHHcCCceeEEEEe-CCceeEEEEeC
Q 018205 323 ----------GSERTEKEWEKLFLDAGFSHFKITPV-YGIKSLIEVYP 359 (359)
Q Consensus 323 ----------g~~~t~~~~~~ll~~aGf~~~~~~~~-~~~~~vi~~~~ 359 (359)
...++.++|.++|+++||+.+++... .+...++.+++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 238 (239)
T PRK00216 191 EAYSYLAESIRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYK 238 (239)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEec
Confidence 12457899999999999999999986 56778887764
No 14
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.62 E-value=2.5e-14 Score=125.02 Aligned_cols=168 Identities=17% Similarity=0.189 Sum_probs=119.7
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCC-CeEEEeecc-cccccCCC----CCCceEeeCCCCC-CCC--C
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPG-IKCTVLDLP-HVVPKVPD----TDNLKFIAGDMFQ-SIP--P 252 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~~-~~~~~a~~----~~~v~~~~~d~~~-~~p--~ 252 (359)
..++..+. ..+..+|||+|||+|.++..+++.+|. .+++++|++ .+++.+++ ..++++..+|+.+ +.+ .
T Consensus 29 ~~~~~~~~--~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 106 (223)
T TIGR01934 29 RRAVKLIG--VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNS 106 (223)
T ss_pred HHHHHHhc--cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCc
Confidence 34455444 346789999999999999999999986 799999995 46665542 3578999999865 333 4
Q ss_pred ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhc--------C--
Q 018205 253 ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAV--------R-- 322 (359)
Q Consensus 253 ~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~-- 322 (359)
||+|+++.++|+.++. ..++++++++|+| ||.+++.+...+...... .....+...++... +
T Consensus 107 ~D~i~~~~~~~~~~~~--~~~l~~~~~~L~~---gG~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (223)
T TIGR01934 107 FDAVTIAFGLRNVTDI--QKALREMYRVLKP---GGRLVILEFSKPANALLK---KFYKFYLKNVLPSIGGLISKNAEAY 178 (223)
T ss_pred EEEEEEeeeeCCcccH--HHHHHHHHHHcCC---CcEEEEEEecCCCchhhH---HHHHHHHHHhhhhhhhhhcCCchhh
Confidence 9999999999988665 5699999999999 999999887654432110 00000000010000 0
Q ss_pred -------CcccCHHHHHHHHHHcCCceeEEEEeCC-ceeEEEEeC
Q 018205 323 -------GSERTEKEWEKLFLDAGFSHFKITPVYG-IKSLIEVYP 359 (359)
Q Consensus 323 -------g~~~t~~~~~~ll~~aGf~~~~~~~~~~-~~~vi~~~~ 359 (359)
....+.++|..+|+++||+.+++.+..+ ...++++++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 223 (223)
T TIGR01934 179 TYLPESIRAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223 (223)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence 1235789999999999999999998854 466777764
No 15
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.62 E-value=2.9e-15 Score=123.98 Aligned_cols=137 Identities=20% Similarity=0.243 Sum_probs=96.4
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCCCCCceEeeCCCCC---CCCCccEEEEcchhccCCc
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPDTDNLKFIAGDMFQ---SIPPADAFFFKAIFHAFVD 267 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~~v~~~~~d~~~---~~p~~D~i~~~~vl~~~~~ 267 (359)
..+..+|||||||+|.++..+++. +.+++++|++. +++. ..+.....+... +...||+|+++.+|||+++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~~g~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d 93 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR--GFEVTGVDISPQMIEK----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPD 93 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT--TSEEEEEESSHHHHHH----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSSH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHhh----hhhhhhhhhhhhhhccccchhhHhhHHHHhhccc
Confidence 456889999999999999999776 34999999954 6655 222333222211 1235999999999999986
Q ss_pred hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCceeE
Q 018205 268 EDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFK 344 (359)
Q Consensus 268 ~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~ 344 (359)
. ..+|++++++|+| ||.+++.++........ ... ..............++.++|..+|+++||++++
T Consensus 94 ~--~~~l~~l~~~Lkp---gG~l~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 94 P--EEFLKELSRLLKP---GGYLVISDPNRDDPSPR----SFL-KWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp H--HHHHHHHHHCEEE---EEEEEEEEEBTTSHHHH----HHH-HCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred H--HHHHHHHHHhcCC---CCEEEEEEcCCcchhhh----HHH-hcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 4 6799999999999 89988888776431110 111 111111101334678999999999999999875
No 16
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.62 E-value=8.2e-15 Score=132.99 Aligned_cols=153 Identities=15% Similarity=0.160 Sum_probs=107.5
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC-------CCCCceEeeCCCCC-C-CCC
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP-------DTDNLKFIAGDMFQ-S-IPP 252 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~-------~~~~v~~~~~d~~~-~-~p~ 252 (359)
.++..+. ..+..+|||||||+|.++..++...+. .++|+|++. ++..++ ...++.+...++.+ + ...
T Consensus 112 ~~l~~l~--~~~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~ 188 (314)
T TIGR00452 112 RVLPHLS--PLKGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYA 188 (314)
T ss_pred HHHHhcC--CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCC
Confidence 4555554 344689999999999999998887654 799999966 654321 24678888888743 2 235
Q ss_pred ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHH
Q 018205 253 ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWE 332 (359)
Q Consensus 253 ~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~ 332 (359)
||+|++..++||++++ ..+|++++++|+| ||.+++.+...+...... ...... + ..|. .-....+.+++.
T Consensus 189 FD~V~s~gvL~H~~dp--~~~L~el~r~Lkp---GG~Lvletl~i~g~~~~~-l~p~~r-y-~k~~--nv~flpS~~~L~ 258 (314)
T TIGR00452 189 FDTVFSMGVLYHRKSP--LEHLKQLKHQLVI---KGELVLETLVIDGDLNTV-LVPKDR-Y-AKMK--NVYFIPSVSALK 258 (314)
T ss_pred cCEEEEcchhhccCCH--HHHHHHHHHhcCC---CCEEEEEEEEecCccccc-cCchHH-H-Hhcc--ccccCCCHHHHH
Confidence 9999999999999766 4599999999999 999998876654332110 000000 0 0010 011245899999
Q ss_pred HHHHHcCCceeEEEEe
Q 018205 333 KLFLDAGFSHFKITPV 348 (359)
Q Consensus 333 ~ll~~aGf~~~~~~~~ 348 (359)
.+|+++||+.+++...
T Consensus 259 ~~L~~aGF~~V~i~~~ 274 (314)
T TIGR00452 259 NWLEKVGFENFRILDV 274 (314)
T ss_pred HHHHHCCCeEEEEEec
Confidence 9999999999988765
No 17
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.62 E-value=6.1e-15 Score=134.84 Aligned_cols=140 Identities=25% Similarity=0.308 Sum_probs=108.3
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC---CCCceEeeCCCCC-CCC--CccEEEEcchhccC
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD---TDNLKFIAGDMFQ-SIP--PADAFFFKAIFHAF 265 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~---~~~v~~~~~d~~~-~~p--~~D~i~~~~vl~~~ 265 (359)
.+..+|||||||+|.++..+++..+..+++++|++. +++.|++ ..+++++.+|+.+ +++ .||+|+++.++|++
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~ 191 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhC
Confidence 346799999999999999999988888999999954 8877763 3578999999854 443 49999999999999
Q ss_pred CchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCceeEE
Q 018205 266 VDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKI 345 (359)
Q Consensus 266 ~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~~ 345 (359)
++.+ ++|++++++|+| ||.+++.+...+... ......+..+ ...+.+++.++|+++||+.+++
T Consensus 192 ~d~~--~~L~e~~rvLkP---GG~LvIi~~~~p~~~------~~r~~~~~~~------~~~t~eEl~~lL~~aGF~~V~i 254 (340)
T PLN02490 192 PDPQ--RGIKEAYRVLKI---GGKACLIGPVHPTFW------LSRFFADVWM------LFPKEEEYIEWFTKAGFKDVKL 254 (340)
T ss_pred CCHH--HHHHHHHHhcCC---CcEEEEEEecCcchh------HHHHhhhhhc------cCCCHHHHHHHHHHCCCeEEEE
Confidence 8774 599999999999 999988775543210 0001111111 1358899999999999999998
Q ss_pred EEeC
Q 018205 346 TPVY 349 (359)
Q Consensus 346 ~~~~ 349 (359)
....
T Consensus 255 ~~i~ 258 (340)
T PLN02490 255 KRIG 258 (340)
T ss_pred EEcC
Confidence 8764
No 18
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.61 E-value=7.6e-15 Score=134.65 Aligned_cols=153 Identities=15% Similarity=0.164 Sum_probs=107.9
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC-------CCCCceEeeCCCCC-CCC-C
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP-------DTDNLKFIAGDMFQ-SIP-P 252 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~-------~~~~v~~~~~d~~~-~~p-~ 252 (359)
.+...++ .....+|||||||+|.++..+++..+. +++|+|++. ++..++ ...++.++.+|+.+ +.+ .
T Consensus 113 ~l~~~l~--~l~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~ 189 (322)
T PRK15068 113 RVLPHLS--PLKGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKA 189 (322)
T ss_pred HHHHhhC--CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCC
Confidence 4445554 234689999999999999999998765 699999965 554321 24579999999844 333 4
Q ss_pred ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHH
Q 018205 253 ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWE 332 (359)
Q Consensus 253 ~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~ 332 (359)
||+|++..++||..+. ..+|++++++|+| ||.+++.+...+...... ......+.. +. .....+|.+++.
T Consensus 190 FD~V~s~~vl~H~~dp--~~~L~~l~~~Lkp---GG~lvl~~~~i~~~~~~~-l~p~~~y~~--~~--~~~~lps~~~l~ 259 (322)
T PRK15068 190 FDTVFSMGVLYHRRSP--LDHLKQLKDQLVP---GGELVLETLVIDGDENTV-LVPGDRYAK--MR--NVYFIPSVPALK 259 (322)
T ss_pred cCEEEECChhhccCCH--HHHHHHHHHhcCC---CcEEEEEEEEecCCCccc-cCchhHHhc--Cc--cceeCCCHHHHH
Confidence 9999999999998766 4699999999999 899988766554432211 000000100 10 011245899999
Q ss_pred HHHHHcCCceeEEEEe
Q 018205 333 KLFLDAGFSHFKITPV 348 (359)
Q Consensus 333 ~ll~~aGf~~~~~~~~ 348 (359)
.+|+++||+.+++...
T Consensus 260 ~~L~~aGF~~i~~~~~ 275 (322)
T PRK15068 260 NWLERAGFKDVRIVDV 275 (322)
T ss_pred HHHHHcCCceEEEEeC
Confidence 9999999999988765
No 19
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.61 E-value=1.2e-14 Score=141.32 Aligned_cols=151 Identities=17% Similarity=0.232 Sum_probs=115.2
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----CCCceEeeCCCCC-CCC--C
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----TDNLKFIAGDMFQ-SIP--P 252 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----~~~v~~~~~d~~~-~~p--~ 252 (359)
..+++.+. ..+..+|||||||+|..+..+++.+ +.+++++|++. +++.|+. ..++++..+|+.+ ++| .
T Consensus 256 e~l~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~ 332 (475)
T PLN02336 256 KEFVDKLD--LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNS 332 (475)
T ss_pred HHHHHhcC--CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCC
Confidence 34566665 5667899999999999999998876 77999999964 7776642 4578999999966 444 3
Q ss_pred ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHH
Q 018205 253 ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWE 332 (359)
Q Consensus 253 ~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~ 332 (359)
||+|++..+++|+++. .++|++++++|+| ||.+++.+.......... ...... ...+...++.+++.
T Consensus 333 fD~I~s~~~l~h~~d~--~~~l~~~~r~Lkp---gG~l~i~~~~~~~~~~~~---~~~~~~-----~~~g~~~~~~~~~~ 399 (475)
T PLN02336 333 FDVIYSRDTILHIQDK--PALFRSFFKWLKP---GGKVLISDYCRSPGTPSP---EFAEYI-----KQRGYDLHDVQAYG 399 (475)
T ss_pred EEEEEECCcccccCCH--HHHHHHHHHHcCC---CeEEEEEEeccCCCCCcH---HHHHHH-----HhcCCCCCCHHHHH
Confidence 9999999999999776 4699999999999 999999987765433221 111111 11234567899999
Q ss_pred HHHHHcCCceeEEEEe
Q 018205 333 KLFLDAGFSHFKITPV 348 (359)
Q Consensus 333 ~ll~~aGf~~~~~~~~ 348 (359)
++++++||.++.+...
T Consensus 400 ~~l~~aGF~~i~~~d~ 415 (475)
T PLN02336 400 QMLKDAGFDDVIAEDR 415 (475)
T ss_pred HHHHHCCCeeeeeecc
Confidence 9999999999877654
No 20
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.60 E-value=9.4e-15 Score=128.58 Aligned_cols=156 Identities=18% Similarity=0.249 Sum_probs=125.5
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCCCCCCc
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQSIPPA 253 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~~~p~~ 253 (359)
+.+++++. +.++++|||||||.|.+++..++.+ +++|+|+++|. +.+.+++ .+++++...|..+..+.|
T Consensus 62 ~~~~~kl~--L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~f 138 (283)
T COG2230 62 DLILEKLG--LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPF 138 (283)
T ss_pred HHHHHhcC--CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccccccc
Confidence 56777887 8899999999999999999999999 99999999965 7666552 468999999995433349
Q ss_pred cEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHH
Q 018205 254 DAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEK 333 (359)
Q Consensus 254 D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ 333 (359)
|-|++..+++|+..+....++++++++|+| ||.+++.....+...... ...+..-. ...+|...+.+++.+
T Consensus 139 DrIvSvgmfEhvg~~~~~~ff~~~~~~L~~---~G~~llh~I~~~~~~~~~----~~~~i~~y--iFPgG~lPs~~~i~~ 209 (283)
T COG2230 139 DRIVSVGMFEHVGKENYDDFFKKVYALLKP---GGRMLLHSITGPDQEFRR----FPDFIDKY--IFPGGELPSISEILE 209 (283)
T ss_pred ceeeehhhHHHhCcccHHHHHHHHHhhcCC---CceEEEEEecCCCccccc----chHHHHHh--CCCCCcCCCHHHHHH
Confidence 999999999999998889999999999999 999999998887754310 00111111 125788889999999
Q ss_pred HHHHcCCceeEEEEeC
Q 018205 334 LFLDAGFSHFKITPVY 349 (359)
Q Consensus 334 ll~~aGf~~~~~~~~~ 349 (359)
..+++||.+.++...+
T Consensus 210 ~~~~~~~~v~~~~~~~ 225 (283)
T COG2230 210 LASEAGFVVLDVESLR 225 (283)
T ss_pred HHHhcCcEEehHhhhc
Confidence 9999999998876653
No 21
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.60 E-value=2e-14 Score=123.03 Aligned_cols=142 Identities=13% Similarity=0.176 Sum_probs=106.0
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCC-CCC-C
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQ-SIP-P 252 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~-~~p-~ 252 (359)
+.+++.++ ..+..+|||+|||+|..+..++++ +.+++++|++. +++.+++ ..++++...|+.+ +++ .
T Consensus 20 ~~l~~~l~--~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 95 (197)
T PRK11207 20 SEVLEAVK--VVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGE 95 (197)
T ss_pred HHHHHhcc--cCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCC
Confidence 46666665 445689999999999999999986 67899999965 8876652 2458888899854 333 4
Q ss_pred ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHH
Q 018205 253 ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWE 332 (359)
Q Consensus 253 ~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~ 332 (359)
||+|+++.++|++++++...++++++++|+| ||.+++++....+..... . .....++.+++.
T Consensus 96 fD~I~~~~~~~~~~~~~~~~~l~~i~~~Lkp---gG~~~~~~~~~~~~~~~~--------~-------~~~~~~~~~el~ 157 (197)
T PRK11207 96 YDFILSTVVLMFLEAKTIPGLIANMQRCTKP---GGYNLIVAAMDTADYPCT--------V-------GFPFAFKEGELR 157 (197)
T ss_pred cCEEEEecchhhCCHHHHHHHHHHHHHHcCC---CcEEEEEEEecCCCCCCC--------C-------CCCCccCHHHHH
Confidence 9999999999998887888999999999999 899777665443321100 0 001235788899
Q ss_pred HHHHHcCCceeEEEE
Q 018205 333 KLFLDAGFSHFKITP 347 (359)
Q Consensus 333 ~ll~~aGf~~~~~~~ 347 (359)
++|+ ||++++...
T Consensus 158 ~~~~--~~~~~~~~~ 170 (197)
T PRK11207 158 RYYE--GWEMVKYNE 170 (197)
T ss_pred HHhC--CCeEEEeeC
Confidence 8886 898877643
No 22
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.59 E-value=2.6e-14 Score=121.39 Aligned_cols=169 Identities=22% Similarity=0.302 Sum_probs=120.3
Q ss_pred HHHHHHHhhccc-ch-HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCC------CeEEEeec-ccccccCCC---
Q 018205 168 SIYNQAMASDSQ-LA-NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPG------IKCTVLDL-PHVVPKVPD--- 235 (359)
Q Consensus 168 ~~~~~~m~~~~~-~~-~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~------~~~~~~D~-~~~~~~a~~--- 235 (359)
...+++|..... .. +-.+.++. .....++|||+||||..+..+.+.-+. .+++++|+ |+|+..+++
T Consensus 74 D~mND~mSlGiHRlWKd~~v~~L~--p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~ 151 (296)
T KOG1540|consen 74 DIMNDAMSLGIHRLWKDMFVSKLG--PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAK 151 (296)
T ss_pred HHHHHHhhcchhHHHHHHhhhccC--CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHh
Confidence 334556654333 22 45566665 445699999999999999999998766 78999999 668877652
Q ss_pred ------CCCceEeeCCCCC-CCCC--ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHH
Q 018205 236 ------TDNLKFIAGDMFQ-SIPP--ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQL 306 (359)
Q Consensus 236 ------~~~v~~~~~d~~~-~~p~--~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~ 306 (359)
..++.++++|..+ ++|. ||.+++.+-+.++++. .+.|++++++||| ||++.+.|...-++..-..+
T Consensus 152 ~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~--~k~l~EAYRVLKp---GGrf~cLeFskv~~~~l~~f 226 (296)
T KOG1540|consen 152 KRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHI--QKALREAYRVLKP---GGRFSCLEFSKVENEPLKWF 226 (296)
T ss_pred hcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCCH--HHHHHHHHHhcCC---CcEEEEEEccccccHHHHHH
Confidence 4569999999965 6764 9999999999999887 5599999999999 99999999776653211100
Q ss_pred HHHHHhhhh---------------hhhhhcCCcccCHHHHHHHHHHcCCceeE
Q 018205 307 TEAKLLYDM---------------LMMVAVRGSERTEKEWEKLFLDAGFSHFK 344 (359)
Q Consensus 307 ~~~~~~~~~---------------~~~~~~~g~~~t~~~~~~ll~~aGf~~~~ 344 (359)
.. ...++. ..+...=.+..+.+++..+.+++||+.+.
T Consensus 227 y~-~ysf~VlpvlG~~iagd~~sYqYLveSI~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 227 YD-QYSFDVLPVLGEIIAGDRKSYQYLVESIRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred HH-hhhhhhhchhhHhhhhhHhhhhhHHhhhhcCCCHHHHHHHHHHcCCcccc
Confidence 00 001111 00101111356899999999999999886
No 23
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.59 E-value=1.1e-14 Score=127.47 Aligned_cols=136 Identities=15% Similarity=0.241 Sum_probs=106.1
Q ss_pred CeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCC-CCC-CccEEEEcchhccC
Q 018205 196 GSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQ-SIP-PADAFFFKAIFHAF 265 (359)
Q Consensus 196 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~-~~p-~~D~i~~~~vl~~~ 265 (359)
++|||||||+|.++..+++.+|+.+++++|++. +++.++. .+++++...|+.. +.+ .||+|++..++|++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 479999999999999999999999999999954 7766652 4678999999854 344 49999999999999
Q ss_pred CchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCceeEE
Q 018205 266 VDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKI 345 (359)
Q Consensus 266 ~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~~ 345 (359)
++. ..++++++++|+| ||.+++.+.......... . . .......+.++|.++++++||+.++.
T Consensus 81 ~~~--~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~---~-----~-----~~~~~~~s~~~~~~~l~~~Gf~~~~~ 142 (224)
T smart00828 81 KDK--MDLFSNISRHLKD---GGHLVLADFIANLLSAIE---H-----E-----ETTSYLVTREEWAELLARNNLRVVEG 142 (224)
T ss_pred CCH--HHHHHHHHHHcCC---CCEEEEEEcccccCcccc---c-----c-----ccccccCCHHHHHHHHHHCCCeEEEe
Confidence 764 5799999999999 999999887543211100 0 0 01122458999999999999999988
Q ss_pred EEeC
Q 018205 346 TPVY 349 (359)
Q Consensus 346 ~~~~ 349 (359)
....
T Consensus 143 ~~~~ 146 (224)
T smart00828 143 VDAS 146 (224)
T ss_pred EECc
Confidence 7763
No 24
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.59 E-value=4e-15 Score=115.52 Aligned_cols=98 Identities=23% Similarity=0.505 Sum_probs=81.7
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCC-------CCCCceEeeCCC-CC--CCCCccEEEEcc-h
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVP-------DTDNLKFIAGDM-FQ--SIPPADAFFFKA-I 261 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~-------~~~~v~~~~~d~-~~--~~p~~D~i~~~~-v 261 (359)
+..+|||||||+|.++..+++.+|+.+++++|++ .+++.|+ ..++++++++|+ .. ..+.||+|++.. .
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT 80 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence 3679999999999999999999899999999995 4887766 268999999999 33 234599999999 6
Q ss_pred hccCC-chHHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 262 FHAFV-DEDCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 262 l~~~~-~~~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
++++. .++..++++++++.|+| ||.++|.+
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~p---gG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKP---GGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCC---CcEEEEEE
Confidence 66443 35778899999999999 88888765
No 25
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.59 E-value=8.5e-15 Score=130.69 Aligned_cols=153 Identities=18% Similarity=0.208 Sum_probs=105.8
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC-------CCCceEeeCCCCC--CCC--CccEEEEcc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD-------TDNLKFIAGDMFQ--SIP--PADAFFFKA 260 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~-------~~~v~~~~~d~~~--~~p--~~D~i~~~~ 260 (359)
.+..+|||+|||+|.++..+++. +.+++++|++ ++++.|++ .++++++++|+.+ +.+ .||+|++..
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA 120 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh
Confidence 45679999999999999999987 5789999995 48887762 3578999999843 222 499999999
Q ss_pred hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhh-----hhcCCcccCHHHHHHHH
Q 018205 261 IFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMM-----VAVRGSERTEKEWEKLF 335 (359)
Q Consensus 261 vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~g~~~t~~~~~~ll 335 (359)
++|+++++ ..+|+++.++|+| ||.+++.............+..........+. .......++.+++.++|
T Consensus 121 vl~~~~~~--~~~l~~~~~~Lkp---gG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l 195 (255)
T PRK11036 121 VLEWVADP--KSVLQTLWSVLRP---GGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWL 195 (255)
T ss_pred HHHhhCCH--HHHHHHHHHHcCC---CeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHHH
Confidence 99999776 4699999999999 89998876553321000000000000000000 00011246889999999
Q ss_pred HHcCCceeEEEEeCCce
Q 018205 336 LDAGFSHFKITPVYGIK 352 (359)
Q Consensus 336 ~~aGf~~~~~~~~~~~~ 352 (359)
+++||+++.+.-+..+.
T Consensus 196 ~~aGf~~~~~~gi~~~~ 212 (255)
T PRK11036 196 EEAGWQIMGKTGVRVFH 212 (255)
T ss_pred HHCCCeEeeeeeEEEEe
Confidence 99999998777654443
No 26
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.59 E-value=9.7e-15 Score=133.13 Aligned_cols=144 Identities=13% Similarity=0.135 Sum_probs=104.2
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCC-CCC--CccEEEEcchh
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQ-SIP--PADAFFFKAIF 262 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~-~~p--~~D~i~~~~vl 262 (359)
+..+|||||||+|.++..+++. +.+++++|++. +++.|+. ..+++++++|+.+ +.+ .||+|++..++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~--g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM--GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 4569999999999999988864 77999999954 8887762 2478999999843 222 49999999999
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhh-hhhcC----CcccCHHHHHHHHHH
Q 018205 263 HAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLM-MVAVR----GSERTEKEWEKLFLD 337 (359)
Q Consensus 263 ~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----g~~~t~~~~~~ll~~ 337 (359)
||+++++ .+|++++++|+| ||.+++.+....... +........... +...+ .+.++.+++.++|++
T Consensus 209 eHv~d~~--~~L~~l~r~LkP---GG~liist~nr~~~~----~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~ 279 (322)
T PLN02396 209 EHVANPA--EFCKSLSALTIP---NGATVLSTINRTMRA----YASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQR 279 (322)
T ss_pred HhcCCHH--HHHHHHHHHcCC---CcEEEEEECCcCHHH----HHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHH
Confidence 9998774 599999999999 899888876432110 100000000000 00111 236799999999999
Q ss_pred cCCceeEEEEe
Q 018205 338 AGFSHFKITPV 348 (359)
Q Consensus 338 aGf~~~~~~~~ 348 (359)
+||+++++..+
T Consensus 280 aGf~i~~~~G~ 290 (322)
T PLN02396 280 ASVDVKEMAGF 290 (322)
T ss_pred cCCeEEEEeee
Confidence 99999988655
No 27
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.59 E-value=1.1e-14 Score=130.14 Aligned_cols=159 Identities=14% Similarity=0.154 Sum_probs=108.5
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC-------CCCCceEeeCCCCCCCCCc
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP-------DTDNLKFIAGDMFQSIPPA 253 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~-------~~~~v~~~~~d~~~~~p~~ 253 (359)
..+++++. +.++.+|||||||.|.++..+++++ +++++++.++. ..+.++ ..+++++...|+.+--+.|
T Consensus 52 ~~~~~~~~--l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~f 128 (273)
T PF02353_consen 52 DLLCEKLG--LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKF 128 (273)
T ss_dssp HHHHTTTT----TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-
T ss_pred HHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCC
Confidence 45677776 7888999999999999999999998 89999999965 666543 2578999999995433369
Q ss_pred cEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHH-HHHhhhhhhhhhcCCcccCHHHHH
Q 018205 254 DAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTE-AKLLYDMLMMVAVRGSERTEKEWE 332 (359)
Q Consensus 254 D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~t~~~~~ 332 (359)
|.|++..+++|+.++....+++++.++|+| ||.+++............ ... ...++.-. ...+|...+.+++.
T Consensus 129 D~IvSi~~~Ehvg~~~~~~~f~~~~~~Lkp---gG~~~lq~i~~~~~~~~~-~~~~~~~~i~ky--iFPgg~lps~~~~~ 202 (273)
T PF02353_consen 129 DRIVSIEMFEHVGRKNYPAFFRKISRLLKP---GGRLVLQTITHRDPPYHA-ERRSSSDFIRKY--IFPGGYLPSLSEIL 202 (273)
T ss_dssp SEEEEESEGGGTCGGGHHHHHHHHHHHSET---TEEEEEEEEEE--HHHHH-CTTCCCHHHHHH--TSTTS---BHHHHH
T ss_pred CEEEEEechhhcChhHHHHHHHHHHHhcCC---CcEEEEEecccccccchh-hcCCCceEEEEe--eCCCCCCCCHHHHH
Confidence 999999999999988888999999999999 899988777765532110 000 00111111 12577888999999
Q ss_pred HHHHHcCCceeEEEEeC
Q 018205 333 KLFLDAGFSHFKITPVY 349 (359)
Q Consensus 333 ~ll~~aGf~~~~~~~~~ 349 (359)
..++++||++.++...+
T Consensus 203 ~~~~~~~l~v~~~~~~~ 219 (273)
T PF02353_consen 203 RAAEDAGLEVEDVENLG 219 (273)
T ss_dssp HHHHHTT-EEEEEEE-H
T ss_pred HHHhcCCEEEEEEEEcC
Confidence 99999999999887664
No 28
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.58 E-value=6.3e-15 Score=121.03 Aligned_cols=138 Identities=25% Similarity=0.403 Sum_probs=99.3
Q ss_pred CCCCeEEEeCCCcchHHHHHH-HHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCC-C--CC-CccEEEEcc
Q 018205 193 QGLGSLVDVGGGTGSFARIIS-EAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQ-S--IP-PADAFFFKA 260 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~-~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~-~--~p-~~D~i~~~~ 260 (359)
.+..+|||+|||+|.++..++ +.+|+.+++++|+++ +++.|+. .+++++.++|+.+ + ++ .||+|++..
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~ 81 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNG 81 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEES
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcC
Confidence 356899999999999999999 557889999999955 9888773 4589999999977 3 32 599999999
Q ss_pred hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhh-cCCcccCHHHHHHHHHHcC
Q 018205 261 IFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVA-VRGSERTEKEWEKLFLDAG 339 (359)
Q Consensus 261 vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~t~~~~~~ll~~aG 339 (359)
++|++++. ..+++++.++|++ +|.+++.+.......... +..... +....... ..+. ..++|..+|++||
T Consensus 82 ~l~~~~~~--~~~l~~~~~~lk~---~G~~i~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~ag 152 (152)
T PF13847_consen 82 VLHHFPDP--EKVLKNIIRLLKP---GGILIISDPNHNDELPEQ-LEELMN-LYSEVWSMIYIGN--DKEEWKYILEEAG 152 (152)
T ss_dssp TGGGTSHH--HHHHHHHHHHEEE---EEEEEEEEEEHSHHHHHH-HHHHHH-HHHHHHHHCC-----CCCGHHHHHHHTT
T ss_pred chhhccCH--HHHHHHHHHHcCC---CcEEEEEECChHHHHHHH-HHHHHH-HHHHHhhhhhccc--CHHHHHHHHHhcC
Confidence 99999776 4599999999999 899998888732211110 111111 00111100 1112 7789999999998
No 29
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.58 E-value=7.6e-14 Score=124.92 Aligned_cols=154 Identities=14% Similarity=0.199 Sum_probs=107.0
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-CCCceEeeCCCCCCC--CCccEEE
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-TDNLKFIAGDMFQSI--PPADAFF 257 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-~~~v~~~~~d~~~~~--p~~D~i~ 257 (359)
..++..++ ..+..+|||||||+|.++..+++.+|+.+++++|+++ +++.|++ ..++.+..+|+.+.. ..||+|+
T Consensus 21 ~~ll~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~ 98 (258)
T PRK01683 21 RDLLARVP--LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLIF 98 (258)
T ss_pred HHHHhhCC--CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEEE
Confidence 56777776 5677899999999999999999999999999999965 8888764 467899999985422 2599999
Q ss_pred EcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHh--hhhhhhhh--cCCcccCHHHHHH
Q 018205 258 FKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLL--YDMLMMVA--VRGSERTEKEWEK 333 (359)
Q Consensus 258 ~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~g~~~t~~~~~~ 333 (359)
++.++|++++. .+++++++++|+| ||.+++.................... +...+... ......+..++.+
T Consensus 99 ~~~~l~~~~d~--~~~l~~~~~~Lkp---gG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 173 (258)
T PRK01683 99 ANASLQWLPDH--LELFPRLVSLLAP---GGVLAVQMPDNLDEPSHVLMREVAENGPWEQNLPDRGARRAPLPPPHAYYD 173 (258)
T ss_pred EccChhhCCCH--HHHHHHHHHhcCC---CcEEEEECCCCCCCHHHHHHHHHHccCchHHHhccccccCcCCCCHHHHHH
Confidence 99999998765 5699999999999 88887753211111100000000000 00000000 1123457788999
Q ss_pred HHHHcCCce
Q 018205 334 LFLDAGFSH 342 (359)
Q Consensus 334 ll~~aGf~~ 342 (359)
++.++|+.+
T Consensus 174 ~l~~~g~~v 182 (258)
T PRK01683 174 ALAPAACRV 182 (258)
T ss_pred HHHhCCCce
Confidence 999999874
No 30
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.57 E-value=6e-14 Score=126.54 Aligned_cols=146 Identities=18% Similarity=0.331 Sum_probs=109.3
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeecc-cccccCCC------CCCceEeeCCCCC-CCC--CccEEEEcc
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDLP-HVVPKVPD------TDNLKFIAGDMFQ-SIP--PADAFFFKA 260 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~-~~~~~a~~------~~~v~~~~~d~~~-~~p--~~D~i~~~~ 260 (359)
+.+..+|||+|||+|..+..+++.. ++.+++++|++ .+++.|++ .+++++..+|+.+ +++ .||+|++..
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 4567899999999999888777664 56689999995 48887763 3588999999854 444 499999999
Q ss_pred hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCC
Q 018205 261 IFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGF 340 (359)
Q Consensus 261 vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf 340 (359)
++|++++. .+++++++++|+| ||.+++.+.......... ...+..++....+..++.++|.++|+++||
T Consensus 155 v~~~~~d~--~~~l~~~~r~Lkp---GG~l~i~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf 223 (272)
T PRK11873 155 VINLSPDK--ERVFKEAFRVLKP---GGRFAISDVVLRGELPEE------IRNDAELYAGCVAGALQEEEYLAMLAEAGF 223 (272)
T ss_pred cccCCCCH--HHHHHHHHHHcCC---CcEEEEEEeeccCCCCHH------HHHhHHHHhccccCCCCHHHHHHHHHHCCC
Confidence 99988765 4699999999999 999999987764432211 111222222223456789999999999999
Q ss_pred ceeEEEEe
Q 018205 341 SHFKITPV 348 (359)
Q Consensus 341 ~~~~~~~~ 348 (359)
..+++...
T Consensus 224 ~~v~i~~~ 231 (272)
T PRK11873 224 VDITIQPK 231 (272)
T ss_pred CceEEEec
Confidence 98877543
No 31
>PRK06922 hypothetical protein; Provisional
Probab=99.55 E-value=2.8e-14 Score=138.20 Aligned_cols=142 Identities=20% Similarity=0.323 Sum_probs=108.5
Q ss_pred CChhhhcccCccHHHHHHHHHhhcccch---HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-c
Q 018205 154 TVFWDYMAKNPDFNSIYNQAMASDSQLA---NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-V 229 (359)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~m~~~~~~~---~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~ 229 (359)
..+|+++.++++...+|...|.....+. ......++ +.+..+|||||||+|.++..+++.+|+.+++++|++. |
T Consensus 377 ~~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d--~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~M 454 (677)
T PRK06922 377 VLLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILD--YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENV 454 (677)
T ss_pred hHHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhh--hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHH
Confidence 5788999888888888876655432221 22222333 3457899999999999999999999999999999966 8
Q ss_pred cccCCC-----CCCceEeeCCCCC-C--CC--CccEEEEcchhccC-----------CchHHHHHHHHHHHhcccCCCCc
Q 018205 230 VPKVPD-----TDNLKFIAGDMFQ-S--IP--PADAFFFKAIFHAF-----------VDEDCLKILKRCREAIASRGDRG 288 (359)
Q Consensus 230 ~~~a~~-----~~~v~~~~~d~~~-~--~p--~~D~i~~~~vl~~~-----------~~~~~~~~L~~~~~~L~p~~~gG 288 (359)
++.|++ ..++.++++|+.+ + ++ .||+|+++.++|++ ++++..++|++++++|+| ||
T Consensus 455 Le~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKP---GG 531 (677)
T PRK06922 455 IDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKP---GG 531 (677)
T ss_pred HHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCC---Cc
Confidence 887762 3467888899854 2 33 49999999999975 245678899999999999 99
Q ss_pred EEEEEeeecCCC
Q 018205 289 KVIIIDIVINEK 300 (359)
Q Consensus 289 ~lli~~~~~~~~ 300 (359)
.+++.+...+..
T Consensus 532 rLII~D~v~~E~ 543 (677)
T PRK06922 532 RIIIRDGIMTED 543 (677)
T ss_pred EEEEEeCccCCc
Confidence 999998765543
No 32
>PRK08317 hypothetical protein; Provisional
Probab=99.54 E-value=1.4e-13 Score=121.59 Aligned_cols=157 Identities=17% Similarity=0.264 Sum_probs=110.0
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeeccc-ccccCCC-----CCCceEeeCCCCC-CCC--C
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDLPH-VVPKVPD-----TDNLKFIAGDMFQ-SIP--P 252 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~-~~~~a~~-----~~~v~~~~~d~~~-~~p--~ 252 (359)
.++..+. +.+..+|||+|||+|.++..+++.+ |+.+++++|++. +++.+++ ..++++...|+.. +++ .
T Consensus 10 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~ 87 (241)
T PRK08317 10 RTFELLA--VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGS 87 (241)
T ss_pred HHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCC
Confidence 4455555 5677899999999999999999987 788999999954 6665542 4678999999854 333 4
Q ss_pred ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcch-HHHHHHHhhhhhhhhhcCCcccCHHHH
Q 018205 253 ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDA-QLTEAKLLYDMLMMVAVRGSERTEKEW 331 (359)
Q Consensus 253 ~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~t~~~~ 331 (359)
||+|++.++++++++. ..++++++++|+| ||.+++.++......... ............. ......++..+|
T Consensus 88 ~D~v~~~~~~~~~~~~--~~~l~~~~~~L~~---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 160 (241)
T PRK08317 88 FDAVRSDRVLQHLEDP--ARALAEIARVLRP---GGRVVVLDTDWDTLVWHSGDRALMRKILNFWS--DHFADPWLGRRL 160 (241)
T ss_pred ceEEEEechhhccCCH--HHHHHHHHHHhcC---CcEEEEEecCCCceeecCCChHHHHHHHHHHH--hcCCCCcHHHHH
Confidence 9999999999999876 5599999999999 999999875432111000 0000111111111 111233456789
Q ss_pred HHHHHHcCCceeEEEEe
Q 018205 332 EKLFLDAGFSHFKITPV 348 (359)
Q Consensus 332 ~~ll~~aGf~~~~~~~~ 348 (359)
.++|+++||..+++...
T Consensus 161 ~~~l~~aGf~~~~~~~~ 177 (241)
T PRK08317 161 PGLFREAGLTDIEVEPY 177 (241)
T ss_pred HHHHHHcCCCceeEEEE
Confidence 99999999998776554
No 33
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.53 E-value=1e-13 Score=120.88 Aligned_cols=180 Identities=14% Similarity=0.136 Sum_probs=114.9
Q ss_pred hhhhcccCccHHHHHHHHHhhcccch-HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccC
Q 018205 156 FWDYMAKNPDFNSIYNQAMASDSQLA-NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKV 233 (359)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~m~~~~~~~-~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a 233 (359)
.|+.++..+.....+...+....... ..+++.+.....+..+|||+|||+|.++..+++. +.+++++|+++ ++..|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a 93 (219)
T TIGR02021 16 RWARIYGSGDPVSRVRQTVREGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMA 93 (219)
T ss_pred HHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHH
Confidence 34444444333333333332222222 4445444411345789999999999999999876 56899999954 88777
Q ss_pred CC-------CCCceEeeCCCCCCCCCccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHH
Q 018205 234 PD-------TDNLKFIAGDMFQSIPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQL 306 (359)
Q Consensus 234 ~~-------~~~v~~~~~d~~~~~p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~ 306 (359)
++ ..++.+..+|+.+....||+|++..+++++++++...+++++.+.+++ |.++... +.... .
T Consensus 94 ~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~----~~~i~~~---~~~~~---~ 163 (219)
T TIGR02021 94 RNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIHYPASDMAKALGHLASLTKE----RVIFTFA---PKTAW---L 163 (219)
T ss_pred HHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCC----CEEEEEC---CCchH---H
Confidence 62 247899999985533569999999999999877778899999999876 4343322 11110 0
Q ss_pred HHHHHhhhhhhhh---hcCCcccCHHHHHHHHHHcCCceeEEEEe
Q 018205 307 TEAKLLYDMLMMV---AVRGSERTEKEWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 307 ~~~~~~~~~~~~~---~~~g~~~t~~~~~~ll~~aGf~~~~~~~~ 348 (359)
.... .+...... ...-..++.+++.++++++||+++.....
T Consensus 164 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~ 207 (219)
T TIGR02021 164 AFLK-MIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGLV 207 (219)
T ss_pred HHHH-HHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeecc
Confidence 0111 11111100 01123568999999999999999988765
No 34
>PRK05785 hypothetical protein; Provisional
Probab=99.53 E-value=3.2e-13 Score=117.91 Aligned_cols=152 Identities=11% Similarity=0.090 Sum_probs=102.0
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCCCCCceEeeCCCCC-CCC--CccEEEEcchhccCCchH
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPDTDNLKFIAGDMFQ-SIP--PADAFFFKAIFHAFVDED 269 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~~v~~~~~d~~~-~~p--~~D~i~~~~vl~~~~~~~ 269 (359)
+..+|||||||+|.++..+++.+ +.+++++|++. |++.|++. ..++++|+.+ +++ .||+|+++.++|++++.
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~--~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~- 126 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA--DDKVVGSFEALPFRDKSFDVVMSSFALHASDNI- 126 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc--cceEEechhhCCCCCCCEEEEEecChhhccCCH-
Confidence 46899999999999999999887 57999999965 99988753 3567888854 444 39999999999999766
Q ss_pred HHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhh---hhhhcCC-------------cccCHHHHHH
Q 018205 270 CLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDML---MMVAVRG-------------SERTEKEWEK 333 (359)
Q Consensus 270 ~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------~~~t~~~~~~ 333 (359)
.+.|++++++|+| . +.+++...++......+.. .++... +.....+ ...+.+++.+
T Consensus 127 -~~~l~e~~RvLkp---~--~~ile~~~p~~~~~~~~~~--~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~ 198 (226)
T PRK05785 127 -EKVIAEFTRVSRK---Q--VGFIAMGKPDNVIKRKYLS--FYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHRE 198 (226)
T ss_pred -HHHHHHHHHHhcC---c--eEEEEeCCCCcHHHHHHHH--HHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHH
Confidence 5699999999998 3 3344544433221110000 000000 0000111 2457899999
Q ss_pred HHHHcCCceeEEEEe-CCceeEEEEe
Q 018205 334 LFLDAGFSHFKITPV-YGIKSLIEVY 358 (359)
Q Consensus 334 ll~~aGf~~~~~~~~-~~~~~vi~~~ 358 (359)
+|+++| ..++.+.. .+...+..++
T Consensus 199 ~~~~~~-~~~~~~~~~~G~~~~~~~~ 223 (226)
T PRK05785 199 IFEKYA-DIKVYEERGLGLVYFVVGS 223 (226)
T ss_pred HHHHHh-CceEEEEccccEEEEEEEe
Confidence 999984 66677666 4455555554
No 35
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.52 E-value=1.7e-13 Score=113.63 Aligned_cols=156 Identities=15% Similarity=0.236 Sum_probs=115.1
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC-CCCCceEeeCCCCCCCC--CccEEE
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP-DTDNLKFIAGDMFQSIP--PADAFF 257 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~-~~~~v~~~~~d~~~~~p--~~D~i~ 257 (359)
.+++..++ .....+|+|+|||+|..+..|++++|+..++|+|-+. |++.|+ ...+++|..+|+.+-.| .+|+++
T Consensus 20 ~dLla~Vp--~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~~dllf 97 (257)
T COG4106 20 RDLLARVP--LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQPTDLLF 97 (257)
T ss_pred HHHHhhCC--ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCccchhh
Confidence 67888888 7788999999999999999999999999999999954 999887 47899999999965444 599999
Q ss_pred EcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHH-----hhhhhhhh--hcCCcccCHHH
Q 018205 258 FKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKL-----LYDMLMMV--AVRGSERTEKE 330 (359)
Q Consensus 258 ~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~-----~~~~~~~~--~~~g~~~t~~~ 330 (359)
++-+||.++|. .++|.++...|.| ||.+.+.= +++...++...... .+.-.+.. .......+...
T Consensus 98 aNAvlqWlpdH--~~ll~rL~~~L~P---gg~LAVQm---PdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~ 169 (257)
T COG4106 98 ANAVLQWLPDH--PELLPRLVSQLAP---GGVLAVQM---PDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAA 169 (257)
T ss_pred hhhhhhhcccc--HHHHHHHHHhhCC---CceEEEEC---CCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHH
Confidence 99999999776 5699999999999 88777743 33332221111110 01111110 01234668999
Q ss_pred HHHHHHHcCCceeEEEEe
Q 018205 331 WEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 331 ~~~ll~~aGf~~~~~~~~ 348 (359)
+-++|...+-+ ++++++
T Consensus 170 Yy~lLa~~~~r-vDiW~T 186 (257)
T COG4106 170 YYELLAPLACR-VDIWHT 186 (257)
T ss_pred HHHHhCcccce-eeeeee
Confidence 99999888754 445444
No 36
>PRK06202 hypothetical protein; Provisional
Probab=99.51 E-value=3.7e-13 Score=118.46 Aligned_cols=150 Identities=16% Similarity=0.115 Sum_probs=100.9
Q ss_pred CCCCeEEEeCCCcchHHHHHHHH----CCCCeEEEeecc-cccccCCC---CCCceEeeCCCC--CCCC-CccEEEEcch
Q 018205 193 QGLGSLVDVGGGTGSFARIISEA----FPGIKCTVLDLP-HVVPKVPD---TDNLKFIAGDMF--QSIP-PADAFFFKAI 261 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~----~p~~~~~~~D~~-~~~~~a~~---~~~v~~~~~d~~--~~~p-~~D~i~~~~v 261 (359)
.+..+|||||||+|.++..|++. .|+.+++++|++ .+++.|++ ..++++...+.. ...+ .||+|+++.+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 45689999999999998888753 456799999995 48887763 345666665542 2222 4999999999
Q ss_pred hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcC-----CcccCHHHHHHHHH
Q 018205 262 FHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVR-----GSERTEKEWEKLFL 336 (359)
Q Consensus 262 l~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~~~t~~~~~~ll~ 336 (359)
+||+++++..++|++++++++ |.+++.+...+.... ..+........-......+ ...++.+++.++++
T Consensus 139 lhh~~d~~~~~~l~~~~r~~~-----~~~~i~dl~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll~ 212 (232)
T PRK06202 139 LHHLDDAEVVRLLADSAALAR-----RLVLHNDLIRSRLAY-ALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALAP 212 (232)
T ss_pred eecCChHHHHHHHHHHHHhcC-----eeEEEeccccCHHHH-HHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHHhh
Confidence 999998888889999999986 466666655542110 0000000000000000111 13679999999999
Q ss_pred HcCCceeEEEEeC
Q 018205 337 DAGFSHFKITPVY 349 (359)
Q Consensus 337 ~aGf~~~~~~~~~ 349 (359)
+ ||++...++..
T Consensus 213 ~-Gf~~~~~~~~~ 224 (232)
T PRK06202 213 Q-GWRVERQWPFR 224 (232)
T ss_pred C-CCeEEecccee
Confidence 9 99988777664
No 37
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.51 E-value=3.1e-14 Score=121.77 Aligned_cols=143 Identities=15% Similarity=0.178 Sum_probs=106.0
Q ss_pred CCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC--------CC----CceEeeCCCCCCCCCccEEEEcch
Q 018205 195 LGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD--------TD----NLKFIAGDMFQSIPPADAFFFKAI 261 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~--------~~----~v~~~~~d~~~~~p~~D~i~~~~v 261 (359)
..+|||||||.|.++..|++. +.+|+|+|+++ +++.|++ .. ++++.+.|.....+.||.|+|+.+
T Consensus 90 g~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsev 167 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEV 167 (282)
T ss_pred CceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHH
Confidence 378999999999999999998 68899999965 8888873 12 477777777444556999999999
Q ss_pred hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhh-hhcC----CcccCHHHHHHHHH
Q 018205 262 FHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMM-VAVR----GSERTEKEWEKLFL 336 (359)
Q Consensus 262 l~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----g~~~t~~~~~~ll~ 336 (359)
++|..|+ ..+++.+.+.|+| +|.++|.+....-... ...-.+.+.... +..| .+..++++...+++
T Consensus 168 leHV~dp--~~~l~~l~~~lkP---~G~lfittinrt~lS~----~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~ 238 (282)
T KOG1270|consen 168 LEHVKDP--QEFLNCLSALLKP---NGRLFITTINRTILSF----AGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILN 238 (282)
T ss_pred HHHHhCH--HHHHHHHHHHhCC---CCceEeeehhhhHHHh----hccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHH
Confidence 9999666 6699999999999 9999998876543321 111111111111 1122 24678999999999
Q ss_pred HcCCceeEEEEe
Q 018205 337 DAGFSHFKITPV 348 (359)
Q Consensus 337 ~aGf~~~~~~~~ 348 (359)
.+|+.+..+.-.
T Consensus 239 ~~~~~v~~v~G~ 250 (282)
T KOG1270|consen 239 ANGAQVNDVVGE 250 (282)
T ss_pred hcCcchhhhhcc
Confidence 999988766543
No 38
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.51 E-value=4.2e-13 Score=114.70 Aligned_cols=142 Identities=15% Similarity=0.148 Sum_probs=103.0
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----CCCceEeeCCCCC-CCC-Cc
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----TDNLKFIAGDMFQ-SIP-PA 253 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----~~~v~~~~~d~~~-~~p-~~ 253 (359)
..+++.++ ..++.+|||+|||+|..+..++++ +.+++++|+++ +++.++. .-++.+...|+.. +.+ .|
T Consensus 20 ~~l~~~~~--~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~f 95 (195)
T TIGR00477 20 SAVREAVK--TVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDY 95 (195)
T ss_pred HHHHHHhc--cCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCC
Confidence 45666665 345689999999999999999986 67899999955 8876542 2246777778743 233 59
Q ss_pred cEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHH
Q 018205 254 DAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEK 333 (359)
Q Consensus 254 D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ 333 (359)
|+|+++.++|++++++...++++++++|+| ||.+++++.......... . .....++.+++.+
T Consensus 96 D~I~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lli~~~~~~~~~~~~--------~-------~~~~~~~~~el~~ 157 (195)
T TIGR00477 96 DFIFSTVVFMFLQAGRVPEIIANMQAHTRP---GGYNLIVAAMDTADYPCH--------M-------PFSFTFKEDELRQ 157 (195)
T ss_pred CEEEEecccccCCHHHHHHHHHHHHHHhCC---CcEEEEEEecccCCCCCC--------C-------CcCccCCHHHHHH
Confidence 999999999999877888999999999999 898777765433221100 0 0012468899999
Q ss_pred HHHHcCCceeEEEE
Q 018205 334 LFLDAGFSHFKITP 347 (359)
Q Consensus 334 ll~~aGf~~~~~~~ 347 (359)
+|. +|+++....
T Consensus 158 ~f~--~~~~~~~~e 169 (195)
T TIGR00477 158 YYA--DWELLKYNE 169 (195)
T ss_pred HhC--CCeEEEeec
Confidence 885 588777763
No 39
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.49 E-value=1.9e-14 Score=109.21 Aligned_cols=87 Identities=25% Similarity=0.474 Sum_probs=57.9
Q ss_pred EEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CC---CceEeeCCCCCCCC--CccEEEEcchhccCC
Q 018205 199 VDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TD---NLKFIAGDMFQSIP--PADAFFFKAIFHAFV 266 (359)
Q Consensus 199 lDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~---~v~~~~~d~~~~~p--~~D~i~~~~vl~~~~ 266 (359)
||||||+|.++..+++.+|..+++++|++. +++.+++ .. ++++...+.....+ .||+|++++++|++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l- 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL- 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh-
Confidence 799999999999999999999999999965 8877773 12 33444445433322 59999999999999
Q ss_pred chHHHHHHHHHHHhcccCCCCcEE
Q 018205 267 DEDCLKILKRCREAIASRGDRGKV 290 (359)
Q Consensus 267 ~~~~~~~L~~~~~~L~p~~~gG~l 290 (359)
++...++++++++|+| ||.+
T Consensus 80 -~~~~~~l~~~~~~L~p---gG~l 99 (99)
T PF08242_consen 80 -EDIEAVLRNIYRLLKP---GGIL 99 (99)
T ss_dssp -S-HHHHHHHHTTT-TS---S-EE
T ss_pred -hhHHHHHHHHHHHcCC---CCCC
Confidence 4456799999999999 8865
No 40
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.49 E-value=8.3e-14 Score=104.41 Aligned_cols=88 Identities=25% Similarity=0.511 Sum_probs=72.6
Q ss_pred EEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC---CCCCceEeeCCCCC-CCC--CccEEEEcchhccCCchHHH
Q 018205 199 VDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP---DTDNLKFIAGDMFQ-SIP--PADAFFFKAIFHAFVDEDCL 271 (359)
Q Consensus 199 lDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~---~~~~v~~~~~d~~~-~~p--~~D~i~~~~vl~~~~~~~~~ 271 (359)
||+|||+|..+..++++ +..+++++|++. +++.++ ...++.+..+|+.+ ++| .||+|++.+++|++ ++..
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~--~~~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL--EDPE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS--SHHH
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec--cCHH
Confidence 79999999999999998 888999999955 777776 35667799999965 555 39999999999999 4456
Q ss_pred HHHHHHHHhcccCCCCcEEEE
Q 018205 272 KILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 272 ~~L~~~~~~L~p~~~gG~lli 292 (359)
+++++++++||| ||.++|
T Consensus 78 ~~l~e~~rvLk~---gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKP---GGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEE---EEEEEE
T ss_pred HHHHHHHHHcCc---CeEEeC
Confidence 799999999999 888875
No 41
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.49 E-value=1.1e-13 Score=117.57 Aligned_cols=144 Identities=15% Similarity=0.161 Sum_probs=103.8
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC---CC--CceEeeCCCCC-CC--CCccEEEEcchhcc
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD---TD--NLKFIAGDMFQ-SI--PPADAFFFKAIFHA 264 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~---~~--~v~~~~~d~~~-~~--p~~D~i~~~~vl~~ 264 (359)
...+|||||||-|.++..+++. +.+|+++|+++ +++.|+. .. .+++.+...++ .. ..||+|+|..|++|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 4689999999999999999998 68999999966 9988883 22 23455555533 12 35999999999999
Q ss_pred CCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHh-hhhhhhhhcC----CcccCHHHHHHHHHHcC
Q 018205 265 FVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLL-YDMLMMVAVR----GSERTEKEWEKLFLDAG 339 (359)
Q Consensus 265 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----g~~~t~~~~~~ll~~aG 339 (359)
.++++. +++.|.+.+|| ||.+++.+.+..... +...... -.+..+...+ .+....+|...++.++|
T Consensus 137 v~dp~~--~~~~c~~lvkP---~G~lf~STinrt~ka----~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~ 207 (243)
T COG2227 137 VPDPES--FLRACAKLVKP---GGILFLSTINRTLKA----YLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGAN 207 (243)
T ss_pred cCCHHH--HHHHHHHHcCC---CcEEEEeccccCHHH----HHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCC
Confidence 998865 99999999999 898888887754321 1100000 0000111111 24567899999999999
Q ss_pred CceeEEEEe
Q 018205 340 FSHFKITPV 348 (359)
Q Consensus 340 f~~~~~~~~ 348 (359)
+.+...+.+
T Consensus 208 ~~~~~~~g~ 216 (243)
T COG2227 208 LKIIDRKGL 216 (243)
T ss_pred ceEEeecce
Confidence 998887765
No 42
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.49 E-value=2.5e-13 Score=121.33 Aligned_cols=99 Identities=20% Similarity=0.355 Sum_probs=81.4
Q ss_pred CCCCeEEEeCCCcch----HHHHHHHHCC-----CCeEEEeeccc-ccccCCCC--------------------------
Q 018205 193 QGLGSLVDVGGGTGS----FARIISEAFP-----GIKCTVLDLPH-VVPKVPDT-------------------------- 236 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~----~~~~l~~~~p-----~~~~~~~D~~~-~~~~a~~~-------------------------- 236 (359)
.+..+|+|+|||+|. +++.+++.++ +.+++++|++. +++.|++.
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 345799999999996 5666777654 57899999965 89877741
Q ss_pred -------CCceEeeCCCCCC-CC--CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 237 -------DNLKFIAGDMFQS-IP--PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 237 -------~~v~~~~~d~~~~-~p--~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
.+|+|..+|+.+. .+ .||+|+|.++|+++++++..+++++++++|+| ||.+++..
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~p---GG~L~lg~ 242 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKP---GGYLFLGH 242 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCC---CeEEEEEC
Confidence 3789999999763 32 49999999999999988888999999999999 89888844
No 43
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.47 E-value=1.2e-12 Score=109.80 Aligned_cols=162 Identities=15% Similarity=0.162 Sum_probs=122.0
Q ss_pred cCCCC-eEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC------CCCCc-eEeeCCCCCC---CC--------
Q 018205 192 FQGLG-SLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP------DTDNL-KFIAGDMFQS---IP-------- 251 (359)
Q Consensus 192 ~~~~~-~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~------~~~~v-~~~~~d~~~~---~p-------- 251 (359)
++... +|||||||||.++..+++.+|++...-.|... .....+ ..+++ ..+..|+.++ .+
T Consensus 22 l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~ 101 (204)
T PF06080_consen 22 LPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPE 101 (204)
T ss_pred hCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCC
Confidence 34445 59999999999999999999999988888844 322111 12222 3344455332 11
Q ss_pred CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhc-CCcccCHHH
Q 018205 252 PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAV-RGSERTEKE 330 (359)
Q Consensus 252 ~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~t~~~ 330 (359)
.||.|++.|++|-.+-+.+..+++.+.++|++ ||.+++..+...++.... +....||..+.... ....|+.++
T Consensus 102 ~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~---gG~L~~YGPF~~~G~~ts---~SN~~FD~sLr~rdp~~GiRD~e~ 175 (204)
T PF06080_consen 102 SFDAIFCINMLHISPWSAVEGLFAGAARLLKP---GGLLFLYGPFNRDGKFTS---ESNAAFDASLRSRDPEWGIRDIED 175 (204)
T ss_pred CcceeeehhHHHhcCHHHHHHHHHHHHHhCCC---CCEEEEeCCcccCCEeCC---cHHHHHHHHHhcCCCCcCccCHHH
Confidence 49999999999999999999999999999999 999999998877664321 23345666655443 466899999
Q ss_pred HHHHHHHcCCceeEEEEeCCceeEEEEeC
Q 018205 331 WEKLFLDAGFSHFKITPVYGIKSLIEVYP 359 (359)
Q Consensus 331 ~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 359 (359)
+.++..++||+..+...++.+..+++.+|
T Consensus 176 v~~lA~~~GL~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 176 VEALAAAHGLELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred HHHHHHHCCCccCcccccCCCCeEEEEeC
Confidence 99999999999999999988776666554
No 44
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.47 E-value=1.5e-12 Score=116.04 Aligned_cols=146 Identities=15% Similarity=0.185 Sum_probs=102.5
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-CCCceEeeCCCCC-CCC--CccEE
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-TDNLKFIAGDMFQ-SIP--PADAF 256 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-~~~v~~~~~d~~~-~~p--~~D~i 256 (359)
..+++.++ ..+..+|||+|||+|.++..+++. +.+++++|++. +++.++. .....++.+|+.+ +++ .||+|
T Consensus 32 ~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V 107 (251)
T PRK10258 32 DALLAMLP--QRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLA 107 (251)
T ss_pred HHHHHhcC--ccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEE
Confidence 44555555 335689999999999999988765 57899999954 8887764 2346788999854 444 49999
Q ss_pred EEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHH
Q 018205 257 FFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFL 336 (359)
Q Consensus 257 ~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~ 336 (359)
+++.++|+.++. ..+|++++++|+| ||.+++......... .....+.............+.++|.+++.
T Consensus 108 ~s~~~l~~~~d~--~~~l~~~~~~Lk~---gG~l~~~~~~~~~~~------el~~~~~~~~~~~~~~~~~~~~~l~~~l~ 176 (251)
T PRK10258 108 WSNLAVQWCGNL--STALRELYRVVRP---GGVVAFTTLVQGSLP------ELHQAWQAVDERPHANRFLPPDAIEQALN 176 (251)
T ss_pred EECchhhhcCCH--HHHHHHHHHHcCC---CeEEEEEeCCCCchH------HHHHHHHHhccCCccccCCCHHHHHHHHH
Confidence 999999987665 5699999999999 888888765433211 11111111000011234578999999999
Q ss_pred HcCCce
Q 018205 337 DAGFSH 342 (359)
Q Consensus 337 ~aGf~~ 342 (359)
..|+..
T Consensus 177 ~~~~~~ 182 (251)
T PRK10258 177 GWRYQH 182 (251)
T ss_pred hCCcee
Confidence 988864
No 45
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.46 E-value=3.6e-13 Score=115.60 Aligned_cols=102 Identities=13% Similarity=0.208 Sum_probs=86.7
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-CCCceEeeCCCCCCCC--CccEEEEcchhccCCch
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-TDNLKFIAGDMFQSIP--PADAFFFKAIFHAFVDE 268 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-~~~v~~~~~d~~~~~p--~~D~i~~~~vl~~~~~~ 268 (359)
++..+|||||||+|..+..+++..|+.+++++|+++ +++.|++ ..++.+..+|+.++++ .||+|++..+|||++++
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl~p~ 121 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIHINPD 121 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhhCCHH
Confidence 456789999999999999999988889999999965 9998875 4678899999876544 49999999999999877
Q ss_pred HHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 018205 269 DCLKILKRCREAIASRGDRGKVIIIDIVINE 299 (359)
Q Consensus 269 ~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~ 299 (359)
+..+++++++++++ +.++|.+...++
T Consensus 122 ~~~~~l~el~r~~~-----~~v~i~e~~~~~ 147 (204)
T TIGR03587 122 NLPTAYRELYRCSN-----RYILIAEYYNPS 147 (204)
T ss_pred HHHHHHHHHHhhcC-----cEEEEEEeeCCC
Confidence 78899999999974 688888876544
No 46
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.45 E-value=7.4e-13 Score=109.06 Aligned_cols=153 Identities=20% Similarity=0.203 Sum_probs=108.7
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC------CCCCce-EeeCCCCC-C-CC--CccEEEEcc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP------DTDNLK-FIAGDMFQ-S-IP--PADAFFFKA 260 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~------~~~~v~-~~~~d~~~-~-~p--~~D~i~~~~ 260 (359)
+....||+||||+|.--... .--|..++|++|+.+ |.+.+. ...++. |+.++..+ + ++ ++|+|++..
T Consensus 75 ~~K~~vLEvgcGtG~Nfkfy-~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tl 153 (252)
T KOG4300|consen 75 SGKGDVLEVGCGTGANFKFY-PWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTL 153 (252)
T ss_pred cCccceEEecccCCCCcccc-cCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEE
Confidence 44567899999999866543 223678999999954 766554 256676 88887743 2 33 499999999
Q ss_pred hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCC
Q 018205 261 IFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGF 340 (359)
Q Consensus 261 vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf 340 (359)
+|+-..++ .+.|++++++|+| ||+++++|..........- -.+...+........|..++.+.| +.|++|-|
T Consensus 154 vLCSve~~--~k~L~e~~rlLRp---gG~iifiEHva~~y~~~n~--i~q~v~ep~~~~~~dGC~ltrd~~-e~Leda~f 225 (252)
T KOG4300|consen 154 VLCSVEDP--VKQLNEVRRLLRP---GGRIIFIEHVAGEYGFWNR--ILQQVAEPLWHLESDGCVLTRDTG-ELLEDAEF 225 (252)
T ss_pred EEeccCCH--HHHHHHHHHhcCC---CcEEEEEecccccchHHHH--HHHHHhchhhheeccceEEehhHH-HHhhhccc
Confidence 99877554 7799999999999 9999999998876653210 011122222233357888899988 56689999
Q ss_pred ceeEEEEeCCceeE
Q 018205 341 SHFKITPVYGIKSL 354 (359)
Q Consensus 341 ~~~~~~~~~~~~~v 354 (359)
+..+..+.....++
T Consensus 226 ~~~~~kr~~~~ttw 239 (252)
T KOG4300|consen 226 SIDSCKRFNFGTTW 239 (252)
T ss_pred ccchhhcccCCceE
Confidence 99888777554443
No 47
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.44 E-value=2e-12 Score=114.27 Aligned_cols=137 Identities=18% Similarity=0.264 Sum_probs=102.3
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC--CCCceEeeCCCCC-CCC--CccEEEEcchhccCCc
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD--TDNLKFIAGDMFQ-SIP--PADAFFFKAIFHAFVD 267 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~--~~~v~~~~~d~~~-~~p--~~D~i~~~~vl~~~~~ 267 (359)
.+.+|||+|||+|.++..+++.+|..+++++|++. +++.++. .+++.++.+|+.+ +++ .||+|++++++|+..+
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~ 113 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDD 113 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccC
Confidence 35799999999999999999999999999999954 7766552 3478999999855 333 4999999999999866
Q ss_pred hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCceeEEEE
Q 018205 268 EDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITP 347 (359)
Q Consensus 268 ~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~~~~ 347 (359)
. .++|++++++|+| ||.+++.+....... ....... .......+.++|.+++.++ |+...+..
T Consensus 114 ~--~~~l~~~~~~L~~---~G~l~~~~~~~~~~~------~~~~~~~-----~~~~~~~~~~~~~~~l~~~-f~~~~~~~ 176 (240)
T TIGR02072 114 L--SQALSELARVLKP---GGLLAFSTFGPGTLH------ELRQSFG-----QHGLRYLSLDELKALLKNS-FELLTLEE 176 (240)
T ss_pred H--HHHHHHHHHHcCC---CcEEEEEeCCccCHH------HHHHHHH-----HhccCCCCHHHHHHHHHHh-cCCcEEEE
Confidence 5 5699999999999 898888764332211 1111111 0223456889999999998 88766543
No 48
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.43 E-value=1.7e-12 Score=114.06 Aligned_cols=145 Identities=16% Similarity=0.195 Sum_probs=100.3
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCCCCCCccEEEEcchhcc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQSIPPADAFFFKAIFHA 264 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~~~p~~D~i~~~~vl~~ 264 (359)
.+..+|||||||+|.++..+++.. .+++++|++. +++.|++ .+++.+..+|+......||+|++..++|+
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~ 139 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIH 139 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhc
Confidence 456799999999999999999874 5699999955 8877762 25789999996323345999999999999
Q ss_pred CCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhh-h-hhcCCcccCHHHHHHHHHHcCCce
Q 018205 265 FVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLM-M-VAVRGSERTEKEWEKLFLDAGFSH 342 (359)
Q Consensus 265 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~t~~~~~~ll~~aGf~~ 342 (359)
+++++...+++++.+.+++ |.++... +.... ............ . ........+.++|.++++++||++
T Consensus 140 ~~~~~~~~~l~~l~~~~~~----~~~i~~~---~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~ 209 (230)
T PRK07580 140 YPQEDAARMLAHLASLTRG----SLIFTFA---PYTPL---LALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKV 209 (230)
T ss_pred CCHHHHHHHHHHHHhhcCC----eEEEEEC---CccHH---HHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCce
Confidence 9988888999999987653 4444322 11110 000101100000 0 001224568899999999999999
Q ss_pred eEEEEeC
Q 018205 343 FKITPVY 349 (359)
Q Consensus 343 ~~~~~~~ 349 (359)
.++....
T Consensus 210 ~~~~~~~ 216 (230)
T PRK07580 210 VRTERIS 216 (230)
T ss_pred Eeeeecc
Confidence 9988764
No 49
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.42 E-value=1.7e-12 Score=121.78 Aligned_cols=153 Identities=13% Similarity=0.135 Sum_probs=111.2
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC---CCCceEeeCCCCCCCCCccEEEE
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD---TDNLKFIAGDMFQSIPPADAFFF 258 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~---~~~v~~~~~d~~~~~p~~D~i~~ 258 (359)
.+++.+. ..+..+|||||||+|.++..+++.+ +++++++|+++ +++.|++ ...+++...|+.+....||+|++
T Consensus 158 ~l~~~l~--l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~Ivs 234 (383)
T PRK11705 158 LICRKLQ--LKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIVS 234 (383)
T ss_pred HHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEEEE
Confidence 4455555 5677899999999999999998876 67999999955 8877663 23578888887433235999999
Q ss_pred cchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHc
Q 018205 259 KAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDA 338 (359)
Q Consensus 259 ~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~a 338 (359)
..++++.++.....++++++++|+| ||.+++.+...+...... ..+.+-. ...+|...+.+++.+.++ .
T Consensus 235 ~~~~ehvg~~~~~~~l~~i~r~Lkp---GG~lvl~~i~~~~~~~~~-----~~~i~~y--ifp~g~lps~~~i~~~~~-~ 303 (383)
T PRK11705 235 VGMFEHVGPKNYRTYFEVVRRCLKP---DGLFLLHTIGSNKTDTNV-----DPWINKY--IFPNGCLPSVRQIAQASE-G 303 (383)
T ss_pred eCchhhCChHHHHHHHHHHHHHcCC---CcEEEEEEccCCCCCCCC-----CCCceee--ecCCCcCCCHHHHHHHHH-C
Confidence 9999999877777899999999999 899988776544321110 0111111 123566778888888766 5
Q ss_pred CCceeEEEEeC
Q 018205 339 GFSHFKITPVY 349 (359)
Q Consensus 339 Gf~~~~~~~~~ 349 (359)
||.+.++...+
T Consensus 304 ~~~v~d~~~~~ 314 (383)
T PRK11705 304 LFVMEDWHNFG 314 (383)
T ss_pred CcEEEEEecCh
Confidence 89888876654
No 50
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.41 E-value=2.5e-12 Score=116.63 Aligned_cols=140 Identities=17% Similarity=0.186 Sum_probs=102.1
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----CCCceEeeCCCCC-CCC-Ccc
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----TDNLKFIAGDMFQ-SIP-PAD 254 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----~~~v~~~~~d~~~-~~p-~~D 254 (359)
.++..++ ..++.+|||+|||+|..+..+++. +.+++++|++. +++.+++ .-++++...|+.. ..+ .||
T Consensus 111 ~~~~~~~--~~~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD 186 (287)
T PRK12335 111 EVLEAVQ--TVKPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYD 186 (287)
T ss_pred HHHHHhh--ccCCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCcc
Confidence 4444444 234569999999999999999886 67999999965 7776542 3368888888854 233 499
Q ss_pred EEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHH
Q 018205 255 AFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKL 334 (359)
Q Consensus 255 ~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~l 334 (359)
+|+++.++|++++++...+++++.++|+| ||.++++.....+....+ . .....++..++.++
T Consensus 187 ~I~~~~vl~~l~~~~~~~~l~~~~~~Lkp---gG~~l~v~~~~~~~~~~~--------~-------p~~~~~~~~el~~~ 248 (287)
T PRK12335 187 FILSTVVLMFLNRERIPAIIKNMQEHTNP---GGYNLIVCAMDTEDYPCP--------M-------PFSFTFKEGELKDY 248 (287)
T ss_pred EEEEcchhhhCCHHHHHHHHHHHHHhcCC---CcEEEEEEecccccCCCC--------C-------CCCcccCHHHHHHH
Confidence 99999999999888888999999999999 898777654433221100 0 00134678999999
Q ss_pred HHHcCCceeEEE
Q 018205 335 FLDAGFSHFKIT 346 (359)
Q Consensus 335 l~~aGf~~~~~~ 346 (359)
+. +|++++..
T Consensus 249 ~~--~~~i~~~~ 258 (287)
T PRK12335 249 YQ--DWEIVKYN 258 (287)
T ss_pred hC--CCEEEEEe
Confidence 85 48888775
No 51
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.41 E-value=3.2e-12 Score=116.65 Aligned_cols=132 Identities=19% Similarity=0.350 Sum_probs=91.0
Q ss_pred CCChhhhcccCccHHHHHHHHHhhcccchHHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCC-CCeEEEeeccc-cc
Q 018205 153 GTVFWDYMAKNPDFNSIYNQAMASDSQLANLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFP-GIKCTVLDLPH-VV 230 (359)
Q Consensus 153 g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~-~~ 230 (359)
|..+|+.+...|++.-.-.+ +.-.....+.+.+.+ ++..+|||+|||+|..+..|+++.+ ..+++++|++. |+
T Consensus 27 G~~lf~~i~~~peYy~tr~E-~~il~~~~~~ia~~~----~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL 101 (301)
T TIGR03438 27 GSELFEQICELPEYYPTRTE-AAILERHADEIAAAT----GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADAL 101 (301)
T ss_pred HHHHHHHHHCCCccccHHHH-HHHHHHHHHHHHHhh----CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHH
Confidence 56677777666654321110 100000013344433 3457899999999999999999987 58999999976 87
Q ss_pred ccCCC-----C--CCceEeeCCCCCC--CC-Cc-----cEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEE
Q 018205 231 PKVPD-----T--DNLKFIAGDMFQS--IP-PA-----DAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 231 ~~a~~-----~--~~v~~~~~d~~~~--~p-~~-----D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli 292 (359)
+.+.+ . .++.++++|+.+. .+ .+ .++++...++++++++...+|++++++|+| ||.+++
T Consensus 102 ~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~p---gG~~li 175 (301)
T TIGR03438 102 KESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGP---GGGLLI 175 (301)
T ss_pred HHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCC---CCEEEE
Confidence 76652 2 3466789999652 22 23 345566789999999999999999999999 888776
No 52
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.41 E-value=3.2e-12 Score=108.66 Aligned_cols=127 Identities=19% Similarity=0.333 Sum_probs=95.2
Q ss_pred HHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC------CCCceEeeCCCCCCCC-CccE
Q 018205 184 IVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD------TDNLKFIAGDMFQSIP-PADA 255 (359)
Q Consensus 184 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~------~~~v~~~~~d~~~~~p-~~D~ 255 (359)
++..+. ..+..+|||||||+|.++..+++++|+.+++++|++ .+++.+++ ..+++++.+|.....+ .||+
T Consensus 23 ~~~~l~--~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~ 100 (187)
T PRK08287 23 ALSKLE--LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADA 100 (187)
T ss_pred HHHhcC--CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCE
Confidence 344554 456789999999999999999999999999999995 47777652 2478999998854444 4999
Q ss_pred EEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHH
Q 018205 256 FFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLF 335 (359)
Q Consensus 256 i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll 335 (359)
|++....+++ ..+++++++.|+| ||.+++...... +.+++.+++
T Consensus 101 v~~~~~~~~~-----~~~l~~~~~~Lk~---gG~lv~~~~~~~----------------------------~~~~~~~~l 144 (187)
T PRK08287 101 IFIGGSGGNL-----TAIIDWSLAHLHP---GGRLVLTFILLE----------------------------NLHSALAHL 144 (187)
T ss_pred EEECCCccCH-----HHHHHHHHHhcCC---CeEEEEEEecHh----------------------------hHHHHHHHH
Confidence 9997765433 4589999999999 888877432110 235667889
Q ss_pred HHcCCceeEEEEe
Q 018205 336 LDAGFSHFKITPV 348 (359)
Q Consensus 336 ~~aGf~~~~~~~~ 348 (359)
++.||+.+++...
T Consensus 145 ~~~g~~~~~~~~~ 157 (187)
T PRK08287 145 EKCGVSELDCVQL 157 (187)
T ss_pred HHCCCCcceEEEE
Confidence 9999987666544
No 53
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.41 E-value=9e-13 Score=119.92 Aligned_cols=144 Identities=17% Similarity=0.141 Sum_probs=95.7
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----------CCCceEeeCCCCCCCCCccEEEEcch
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----------TDNLKFIAGDMFQSIPPADAFFFKAI 261 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----------~~~v~~~~~d~~~~~p~~D~i~~~~v 261 (359)
+..+|||||||+|.++..+++. +.+++++|++. |++.|++ ..++++...|+.+....||+|+|..+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~v 221 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDV 221 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCE
Confidence 4579999999999999999986 67899999965 8877652 13578888888432235999999999
Q ss_pred hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhh--hhcCCcccCHHHHHHHHHHcC
Q 018205 262 FHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMM--VAVRGSERTEKEWEKLFLDAG 339 (359)
Q Consensus 262 l~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~t~~~~~~ll~~aG 339 (359)
++|++++....+++.+.+. .+ |.++|.. .+.... +......-..... .......++.+++.++|+++|
T Consensus 222 L~H~p~~~~~~ll~~l~~l-~~----g~liIs~--~p~~~~---~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AG 291 (315)
T PLN02585 222 LIHYPQDKADGMIAHLASL-AE----KRLIISF--APKTLY---YDILKRIGELFPGPSKATRAYLHAEADVERALKKAG 291 (315)
T ss_pred EEecCHHHHHHHHHHHHhh-cC----CEEEEEe--CCcchH---HHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCC
Confidence 9999887777788888754 44 4555522 111110 0000000000000 000112448999999999999
Q ss_pred CceeEEEEeC
Q 018205 340 FSHFKITPVY 349 (359)
Q Consensus 340 f~~~~~~~~~ 349 (359)
|++.......
T Consensus 292 f~v~~~~~~~ 301 (315)
T PLN02585 292 WKVARREMTA 301 (315)
T ss_pred CEEEEEEEee
Confidence 9987766553
No 54
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.39 E-value=4.3e-12 Score=111.90 Aligned_cols=154 Identities=12% Similarity=0.108 Sum_probs=103.8
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC-------CCCCceEeeCCCCC--CCC
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP-------DTDNLKFIAGDMFQ--SIP 251 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~-------~~~~v~~~~~d~~~--~~p 251 (359)
+.+...++ --.+++|||||||+|.++..++.+.+. .|+|+|... ...... ...++.....-+.+ ...
T Consensus 105 ~rl~p~l~--~L~gk~VLDIGC~nGY~~frM~~~GA~-~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~ 181 (315)
T PF08003_consen 105 DRLLPHLP--DLKGKRVLDIGCNNGYYSFRMLGRGAK-SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLG 181 (315)
T ss_pred HHHHhhhC--CcCCCEEEEecCCCcHHHHHHhhcCCC-EEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccC
Confidence 45566664 224689999999999999999988544 799999844 222211 12333444333322 123
Q ss_pred CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHH
Q 018205 252 PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEW 331 (359)
Q Consensus 252 ~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~ 331 (359)
.||+|+|..||+|..++ ...|+++++.|+| ||.+++-..+.+...... +.+... ...|. .-....|...+
T Consensus 182 ~FDtVF~MGVLYHrr~P--l~~L~~Lk~~L~~---gGeLvLETlvi~g~~~~~-L~P~~r--Ya~m~--nv~FiPs~~~L 251 (315)
T PF08003_consen 182 AFDTVFSMGVLYHRRSP--LDHLKQLKDSLRP---GGELVLETLVIDGDENTV-LVPEDR--YAKMR--NVWFIPSVAAL 251 (315)
T ss_pred CcCEEEEeeehhccCCH--HHHHHHHHHhhCC---CCEEEEEEeeecCCCceE-EccCCc--ccCCC--ceEEeCCHHHH
Confidence 49999999999999887 5699999999999 888888777766544321 000000 00110 11235699999
Q ss_pred HHHHHHcCCceeEEEEe
Q 018205 332 EKLFLDAGFSHFKITPV 348 (359)
Q Consensus 332 ~~ll~~aGf~~~~~~~~ 348 (359)
..|++++||+.+++...
T Consensus 252 ~~wl~r~gF~~v~~v~~ 268 (315)
T PF08003_consen 252 KNWLERAGFKDVRCVDV 268 (315)
T ss_pred HHHHHHcCCceEEEecC
Confidence 99999999999998766
No 55
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.39 E-value=6.1e-13 Score=101.23 Aligned_cols=88 Identities=19% Similarity=0.371 Sum_probs=71.2
Q ss_pred EEEeCCCcchHHHHHHHHC---CCCeEEEeeccc-ccccCCC-----CCCceEeeCCCCC-C--CCCccEEEEc-chhcc
Q 018205 198 LVDVGGGTGSFARIISEAF---PGIKCTVLDLPH-VVPKVPD-----TDNLKFIAGDMFQ-S--IPPADAFFFK-AIFHA 264 (359)
Q Consensus 198 vlDvG~G~G~~~~~l~~~~---p~~~~~~~D~~~-~~~~a~~-----~~~v~~~~~d~~~-~--~p~~D~i~~~-~vl~~ 264 (359)
|||+|||+|..+..+++.+ |..+++++|+++ +++.+++ ..+++++++|+.+ + .+.||+|+++ .++++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999999987 557999999955 8887762 3589999999955 2 2359999995 55999
Q ss_pred CCchHHHHHHHHHHHhcccCCCCc
Q 018205 265 FVDEDCLKILKRCREAIASRGDRG 288 (359)
Q Consensus 265 ~~~~~~~~~L~~~~~~L~p~~~gG 288 (359)
+++++..++++++.++|+| ||
T Consensus 81 ~~~~~~~~ll~~~~~~l~p---gG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRP---GG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEE---EE
T ss_pred CCHHHHHHHHHHHHHHhCC---CC
Confidence 9999999999999999999 66
No 56
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.39 E-value=3.2e-12 Score=124.41 Aligned_cols=144 Identities=16% Similarity=0.207 Sum_probs=108.7
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC----CCCCceEeeCCCCC---CCC--
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP----DTDNLKFIAGDMFQ---SIP-- 251 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~----~~~~v~~~~~d~~~---~~p-- 251 (359)
..+++.++ ..+..+|||||||+|.++..+++.. .+++++|++. +++.+. ..+++.++++|+.+ ++|
T Consensus 27 ~~il~~l~--~~~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~ 102 (475)
T PLN02336 27 PEILSLLP--PYEGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDG 102 (475)
T ss_pred hHHHhhcC--ccCCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCC
Confidence 34555555 3456799999999999999999874 4799999954 777654 24578999999853 334
Q ss_pred CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHH
Q 018205 252 PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEW 331 (359)
Q Consensus 252 ~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~ 331 (359)
.||+|++..++|++++++..+++++++++|+| ||.+++.|.......... .. ......++...|
T Consensus 103 ~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~---gG~l~~~d~~~~~~~~~~------~~-------~~~~~~~~~~~~ 166 (475)
T PLN02336 103 SVDLIFSNWLLMYLSDKEVENLAERMVKWLKV---GGYIFFRESCFHQSGDSK------RK-------NNPTHYREPRFY 166 (475)
T ss_pred CEEEEehhhhHHhCCHHHHHHHHHHHHHhcCC---CeEEEEEeccCCCCCccc------cc-------CCCCeecChHHH
Confidence 49999999999999988888999999999999 999999887654432110 00 011234578899
Q ss_pred HHHHHHcCCceeEE
Q 018205 332 EKLFLDAGFSHFKI 345 (359)
Q Consensus 332 ~~ll~~aGf~~~~~ 345 (359)
.++|.++||.....
T Consensus 167 ~~~f~~~~~~~~~~ 180 (475)
T PLN02336 167 TKVFKECHTRDEDG 180 (475)
T ss_pred HHHHHHheeccCCC
Confidence 99999999986543
No 57
>PLN03075 nicotianamine synthase; Provisional
Probab=99.38 E-value=3.8e-12 Score=113.52 Aligned_cols=137 Identities=14% Similarity=0.205 Sum_probs=98.0
Q ss_pred CCCCeEEEeCCCcchHH--HHHHHHCCCCeEEEeecc-cccccCCC--------CCCceEeeCCCCCCC---CCccEEEE
Q 018205 193 QGLGSLVDVGGGTGSFA--RIISEAFPGIKCTVLDLP-HVVPKVPD--------TDNLKFIAGDMFQSI---PPADAFFF 258 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~--~~l~~~~p~~~~~~~D~~-~~~~~a~~--------~~~v~~~~~d~~~~~---p~~D~i~~ 258 (359)
.++++|+|||||.|.++ ..++..+|+.+++++|.+ ++++.|++ .++++|..+|..+.. .+||+|++
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence 36799999999988443 334456899999999994 47776662 468999999996532 35999999
Q ss_pred cchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHc
Q 018205 259 KAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDA 338 (359)
Q Consensus 259 ~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~a 338 (359)
. ++|+|..++..++|+++++.|+| ||.+++-.. .+ ....++ .....++.+
T Consensus 202 ~-ALi~~dk~~k~~vL~~l~~~LkP---GG~Lvlr~~---~G-------~r~~LY----------p~v~~~~~~------ 251 (296)
T PLN03075 202 A-ALVGMDKEEKVKVIEHLGKHMAP---GALLMLRSA---HG-------ARAFLY----------PVVDPCDLR------ 251 (296)
T ss_pred e-cccccccccHHHHHHHHHHhcCC---CcEEEEecc---cc-------hHhhcC----------CCCChhhCC------
Confidence 9 99999766778899999999999 887777441 11 111111 112233332
Q ss_pred CCceeEEEEeCC--ceeEEEEeC
Q 018205 339 GFSHFKITPVYG--IKSLIEVYP 359 (359)
Q Consensus 339 Gf~~~~~~~~~~--~~~vi~~~~ 359 (359)
||.+..+.+-.+ ..+||.+++
T Consensus 252 gf~~~~~~~P~~~v~Nsvi~~r~ 274 (296)
T PLN03075 252 GFEVLSVFHPTDEVINSVIIARK 274 (296)
T ss_pred CeEEEEEECCCCCceeeEEEEEe
Confidence 999888876633 578888874
No 58
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.37 E-value=1.4e-11 Score=103.98 Aligned_cols=132 Identities=17% Similarity=0.213 Sum_probs=102.1
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC-----CCCceEeeCCCCCCC-CCccEEEEcchhccCC
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD-----TDNLKFIAGDMFQSI-PPADAFFFKAIFHAFV 266 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~-----~~~v~~~~~d~~~~~-p~~D~i~~~~vl~~~~ 266 (359)
+..+|||+|||+|.++..+++..+ +++++|++ .+++.++. ..+++++.+|..+.. +.||+|+++..+|+.+
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~~ 96 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPLE 96 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCCc
Confidence 357899999999999999999865 89999994 48776662 246788999986533 3599999998877664
Q ss_pred ch-------------------HHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccC
Q 018205 267 DE-------------------DCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERT 327 (359)
Q Consensus 267 ~~-------------------~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t 327 (359)
++ ....+++++.++|+| ||.+++...... .
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~---gG~~~~~~~~~~----------------------------~ 145 (179)
T TIGR00537 97 DDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKE---GGRVQLIQSSLN----------------------------G 145 (179)
T ss_pred chhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCC---CCEEEEEEeccC----------------------------C
Confidence 32 135689999999999 999988763221 2
Q ss_pred HHHHHHHHHHcCCceeEEEEeCCceeEEEEe
Q 018205 328 EKEWEKLFLDAGFSHFKITPVYGIKSLIEVY 358 (359)
Q Consensus 328 ~~~~~~ll~~aGf~~~~~~~~~~~~~vi~~~ 358 (359)
..++.+++++.||....+...+.+.-.++++
T Consensus 146 ~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~ 176 (179)
T TIGR00537 146 EPDTFDKLDERGFRYEIVAERGLFFEELFAI 176 (179)
T ss_pred hHHHHHHHHhCCCeEEEEEEeecCceEEEEE
Confidence 4567888999999999998887776666655
No 59
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.37 E-value=5.7e-12 Score=105.70 Aligned_cols=140 Identities=16% Similarity=0.226 Sum_probs=95.7
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC-----CCCCceEeeCCCCC-CCC-Ccc
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP-----DTDNLKFIAGDMFQ-SIP-PAD 254 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~-----~~~~v~~~~~d~~~-~~p-~~D 254 (359)
.+++.++ ..++.++||+|||.|..+..|+++ +..|+++|.+. .++.+. +.-.|+....|+.+ .++ .||
T Consensus 21 ~v~~a~~--~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~yD 96 (192)
T PF03848_consen 21 EVLEAVP--LLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEYD 96 (192)
T ss_dssp HHHHHCT--TS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTEE
T ss_pred HHHHHHh--hcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCcC
Confidence 5566666 445789999999999999999999 88999999965 665543 34458889999855 444 499
Q ss_pred EEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHH
Q 018205 255 AFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKL 334 (359)
Q Consensus 255 ~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~l 334 (359)
+|++..++++++.+...++++++.+.++| ||.+++.........+.+ .. ....+...|+...
T Consensus 97 ~I~st~v~~fL~~~~~~~i~~~m~~~~~p---GG~~li~~~~~~~d~p~~--------~~-------~~f~~~~~EL~~~ 158 (192)
T PF03848_consen 97 FIVSTVVFMFLQRELRPQIIENMKAATKP---GGYNLIVTFMETPDYPCP--------SP-------FPFLLKPGELREY 158 (192)
T ss_dssp EEEEESSGGGS-GGGHHHHHHHHHHTEEE---EEEEEEEEEB--SSS--S--------S---------S--B-TTHHHHH
T ss_pred EEEEEEEeccCCHHHHHHHHHHHHhhcCC---cEEEEEEEecccCCCCCC--------CC-------CCcccCHHHHHHH
Confidence 99999999999999999999999999999 787777554332211100 00 1123466778887
Q ss_pred HHHcCCceeEEE
Q 018205 335 FLDAGFSHFKIT 346 (359)
Q Consensus 335 l~~aGf~~~~~~ 346 (359)
+ +||.+++..
T Consensus 159 y--~dW~il~y~ 168 (192)
T PF03848_consen 159 Y--ADWEILKYN 168 (192)
T ss_dssp T--TTSEEEEEE
T ss_pred h--CCCeEEEEE
Confidence 7 478877654
No 60
>PRK04266 fibrillarin; Provisional
Probab=99.36 E-value=1.8e-11 Score=106.53 Aligned_cols=133 Identities=9% Similarity=0.106 Sum_probs=92.8
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccc----cCCCCCCceEeeCCCCCC-----CC-CccEEEEcc
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVP----KVPDTDNLKFIAGDMFQS-----IP-PADAFFFKA 260 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~----~a~~~~~v~~~~~d~~~~-----~p-~~D~i~~~~ 260 (359)
+.+..+|||+|||+|.++..+++..+..+++++|+++ |++ .++...++.++.+|...+ ++ .+|+|++.
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~~d- 148 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIYQD- 148 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEEEC-
Confidence 5677899999999999999999988766899999954 665 444456899999998542 12 48999843
Q ss_pred hhccCCch-HHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcC
Q 018205 261 IFHAFVDE-DCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAG 339 (359)
Q Consensus 261 vl~~~~~~-~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aG 339 (359)
.+++ ....+|++++++|+| ||.++|.-...+-..... . . +..++..++++++|
T Consensus 149 ----~~~p~~~~~~L~~~~r~LKp---GG~lvI~v~~~~~d~~~~---~---------------~-~~~~~~~~~l~~aG 202 (226)
T PRK04266 149 ----VAQPNQAEIAIDNAEFFLKD---GGYLLLAIKARSIDVTKD---P---------------K-EIFKEEIRKLEEGG 202 (226)
T ss_pred ----CCChhHHHHHHHHHHHhcCC---CcEEEEEEecccccCcCC---H---------------H-HHHHHHHHHHHHcC
Confidence 3322 234578999999999 999998522211000000 0 0 11244569999999
Q ss_pred CceeEEEEeCCc
Q 018205 340 FSHFKITPVYGI 351 (359)
Q Consensus 340 f~~~~~~~~~~~ 351 (359)
|+.++.......
T Consensus 203 F~~i~~~~l~p~ 214 (226)
T PRK04266 203 FEILEVVDLEPY 214 (226)
T ss_pred CeEEEEEcCCCC
Confidence 999999887543
No 61
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.36 E-value=1.8e-12 Score=109.20 Aligned_cols=140 Identities=18% Similarity=0.316 Sum_probs=99.0
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCC-----CCCCc-eEeeCCCCC--CCC-CccEEEEcchhc
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVP-----DTDNL-KFIAGDMFQ--SIP-PADAFFFKAIFH 263 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-----~~~~v-~~~~~d~~~--~~p-~~D~i~~~~vl~ 263 (359)
+..+.||.|+|.|..+..++-.. --+|-.+|+ +..++.|+ ...++ ++.+..+.+ |.+ .||+|++.+++-
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 56899999999999998876544 236888888 45777776 22343 555555533 333 499999999999
Q ss_pred cCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCcee
Q 018205 264 AFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHF 343 (359)
Q Consensus 264 ~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~ 343 (359)
|++|++..++|++|+++|+| +|.|+|-|.+...... .+|-. .++-.|+.+.|.++|++||++++
T Consensus 134 hLTD~dlv~fL~RCk~~L~~---~G~IvvKEN~~~~~~~---------~~D~~----DsSvTRs~~~~~~lF~~AGl~~v 197 (218)
T PF05891_consen 134 HLTDEDLVAFLKRCKQALKP---NGVIVVKENVSSSGFD---------EFDEE----DSSVTRSDEHFRELFKQAGLRLV 197 (218)
T ss_dssp GS-HHHHHHHHHHHHHHEEE---EEEEEEEEEEESSSEE---------EEETT----TTEEEEEHHHHHHHHHHCT-EEE
T ss_pred cCCHHHHHHHHHHHHHhCcC---CcEEEEEecCCCCCCc---------ccCCc----cCeeecCHHHHHHHHHHcCCEEE
Confidence 99999999999999999999 8888888877665421 12221 34567899999999999999999
Q ss_pred EEEEeCC
Q 018205 344 KITPVYG 350 (359)
Q Consensus 344 ~~~~~~~ 350 (359)
+...-.+
T Consensus 198 ~~~~Q~~ 204 (218)
T PF05891_consen 198 KEEKQKG 204 (218)
T ss_dssp EEEE-TT
T ss_pred EeccccC
Confidence 8776644
No 62
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.35 E-value=1.9e-12 Score=107.30 Aligned_cols=135 Identities=13% Similarity=0.168 Sum_probs=96.0
Q ss_pred hcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC----CCCCceEeeCCCCCCCC--CccEEEEc
Q 018205 187 DCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP----DTDNLKFIAGDMFQSIP--PADAFFFK 259 (359)
Q Consensus 187 ~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~----~~~~v~~~~~d~~~~~p--~~D~i~~~ 259 (359)
.++ -....+++|+|||.|.++..|+.+. -+++++|++. .++.|+ ..++|++.+.|+.+..| .||+|+++
T Consensus 38 aLp--~~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~S 113 (201)
T PF05401_consen 38 ALP--RRRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLS 113 (201)
T ss_dssp HHT--TSSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEE
T ss_pred hcC--ccccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEe
Confidence 455 4456899999999999999999985 4799999955 888776 46899999999966555 49999999
Q ss_pred chhccCCc-hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHc
Q 018205 260 AIFHAFVD-EDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDA 338 (359)
Q Consensus 260 ~vl~~~~~-~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~a 338 (359)
.++|++.+ ++...+++++.++|+| ||.+++.+.... ....+ |.....+.+.++|++.
T Consensus 114 EVlYYL~~~~~L~~~l~~l~~~L~p---gG~LV~g~~rd~------------~c~~w-------gh~~ga~tv~~~~~~~ 171 (201)
T PF05401_consen 114 EVLYYLDDAEDLRAALDRLVAALAP---GGHLVFGHARDA------------NCRRW-------GHAAGAETVLEMLQEH 171 (201)
T ss_dssp S-GGGSSSHHHHHHHHHHHHHTEEE---EEEEEEEEE-HH------------HHHHT-------T-S--HHHHHHHHHHH
T ss_pred hHhHcCCCHHHHHHHHHHHHHHhCC---CCEEEEEEecCC------------ccccc-------CcccchHHHHHHHHHH
Confidence 99999986 6788899999999999 898888764211 00111 2344678888888887
Q ss_pred CCceeEEEEe
Q 018205 339 GFSHFKITPV 348 (359)
Q Consensus 339 Gf~~~~~~~~ 348 (359)
|..++....
T Consensus 172 -~~~~~~~~~ 180 (201)
T PF05401_consen 172 -LTEVERVEC 180 (201)
T ss_dssp -SEEEEEEEE
T ss_pred -hhheeEEEE
Confidence 666666665
No 63
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.34 E-value=3.3e-11 Score=103.97 Aligned_cols=132 Identities=14% Similarity=0.166 Sum_probs=99.1
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC------------------CCCCceEeeCCCCCC----
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP------------------DTDNLKFIAGDMFQS---- 249 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~------------------~~~~v~~~~~d~~~~---- 249 (359)
.+..+|||+|||.|..+..|+++ +.+|+++|+++ +++.+. ...+|+++++|+++.
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 35679999999999999999987 78999999965 666531 135789999999762
Q ss_pred CCCccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHH
Q 018205 250 IPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEK 329 (359)
Q Consensus 250 ~p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~ 329 (359)
.+.||.|+-+.++|+++.+.....++.+.++|+| ||.+++........... .--...+.+
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkp---gG~~ll~~~~~~~~~~~-----------------gpp~~~~~~ 170 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPP---GARQLLITLDYDQSEMA-----------------GPPFSVSPA 170 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCC---CCeEEEEEEEcCCCCCC-----------------CcCCCCCHH
Confidence 2359999999999999988888999999999999 88877776654322100 001235888
Q ss_pred HHHHHHHHcCCceeEEEE
Q 018205 330 EWEKLFLDAGFSHFKITP 347 (359)
Q Consensus 330 ~~~~ll~~aGf~~~~~~~ 347 (359)
++.++|.. +|.+..+..
T Consensus 171 eL~~~f~~-~~~i~~~~~ 187 (213)
T TIGR03840 171 EVEALYGG-HYEIELLES 187 (213)
T ss_pred HHHHHhcC-CceEEEEee
Confidence 99988863 455554443
No 64
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.31 E-value=2.4e-11 Score=102.30 Aligned_cols=90 Identities=19% Similarity=0.234 Sum_probs=71.9
Q ss_pred CCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC------CCCCceEeeCCCCCC--CCCccEEEEcchhccC
Q 018205 195 LGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP------DTDNLKFIAGDMFQS--IPPADAFFFKAIFHAF 265 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~------~~~~v~~~~~d~~~~--~p~~D~i~~~~vl~~~ 265 (359)
..+|||||||+|..+..++...|+.+++++|.+. +++.++ ..++++++.+|+.+- ...||+|++.. ++++
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~~~~ 121 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-LASL 121 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-hhCH
Confidence 6899999999999999999888999999999954 666554 134699999999552 23599999866 4433
Q ss_pred CchHHHHHHHHHHHhcccCCCCcEEEEE
Q 018205 266 VDEDCLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 266 ~~~~~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
..+++.++++|+| ||.+++.
T Consensus 122 -----~~~~~~~~~~Lkp---gG~lvi~ 141 (181)
T TIGR00138 122 -----NVLLELTLNLLKV---GGYFLAY 141 (181)
T ss_pred -----HHHHHHHHHhcCC---CCEEEEE
Confidence 3588899999999 8988875
No 65
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.29 E-value=1.4e-11 Score=105.40 Aligned_cols=141 Identities=13% Similarity=0.121 Sum_probs=93.4
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCCCCCceEeeCCCCC---CCC--CccEEEEcchhccCC
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPDTDNLKFIAGDMFQ---SIP--PADAFFFKAIFHAFV 266 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~~v~~~~~d~~~---~~p--~~D~i~~~~vl~~~~ 266 (359)
++..+|||||||+|.++..+++.. +.+++++|+++ +++.++. .+++++.+|+.+ +++ .||+|++++++|+++
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~-~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~ 89 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVA-RGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATR 89 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHH-cCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCc
Confidence 356799999999999999887754 66889999954 7776653 457888888854 233 499999999999997
Q ss_pred chHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhh----------hhhhhhcCCcccCHHHHHHHHH
Q 018205 267 DEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYD----------MLMMVAVRGSERTEKEWEKLFL 336 (359)
Q Consensus 267 ~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~g~~~t~~~~~~ll~ 336 (359)
+. ..+|+++.+.+++ +++.-+...... ........ ...........++.+++.++++
T Consensus 90 d~--~~~l~e~~r~~~~------~ii~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~ 156 (194)
T TIGR02081 90 NP--EEILDEMLRVGRH------AIVSFPNFGYWR-----VRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCG 156 (194)
T ss_pred CH--HHHHHHHHHhCCe------EEEEcCChhHHH-----HHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHH
Confidence 65 4588888877554 333211111000 00000000 0000001224679999999999
Q ss_pred HcCCceeEEEEe
Q 018205 337 DAGFSHFKITPV 348 (359)
Q Consensus 337 ~aGf~~~~~~~~ 348 (359)
++||++++....
T Consensus 157 ~~Gf~v~~~~~~ 168 (194)
T TIGR02081 157 ELNLRILDRAAF 168 (194)
T ss_pred HCCCEEEEEEEe
Confidence 999999887766
No 66
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.29 E-value=8.6e-11 Score=99.16 Aligned_cols=117 Identities=18% Similarity=0.220 Sum_probs=88.6
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCC-CCC-CccEEEEcchhcc
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQ-SIP-PADAFFFKAIFHA 264 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~-~~p-~~D~i~~~~vl~~ 264 (359)
+..+|||+|||+|..+..++++.|+.+++++|.++ +++.|++ .++++++.+|+.+ ... .||+|+++.+
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~--- 121 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV--- 121 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc---
Confidence 47899999999999999999999999999999954 8876652 3459999999854 222 5999998752
Q ss_pred CCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCceeE
Q 018205 265 FVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFK 344 (359)
Q Consensus 265 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~ 344 (359)
. ....+++++++.|+| ||.+++..... ...++.++.+..|+.+.+
T Consensus 122 -~--~~~~~l~~~~~~Lkp---GG~lv~~~~~~-----------------------------~~~~l~~~~~~~~~~~~~ 166 (187)
T PRK00107 122 -A--SLSDLVELCLPLLKP---GGRFLALKGRD-----------------------------PEEEIAELPKALGGKVEE 166 (187)
T ss_pred -c--CHHHHHHHHHHhcCC---CeEEEEEeCCC-----------------------------hHHHHHHHHHhcCceEee
Confidence 2 235699999999999 89988864211 123355666667999877
Q ss_pred EEEe
Q 018205 345 ITPV 348 (359)
Q Consensus 345 ~~~~ 348 (359)
++..
T Consensus 167 ~~~~ 170 (187)
T PRK00107 167 VIEL 170 (187)
T ss_pred eEEE
Confidence 7655
No 67
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.28 E-value=2e-11 Score=113.46 Aligned_cols=108 Identities=18% Similarity=0.333 Sum_probs=86.1
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC---------CCCceEeeCCCCCCCC
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD---------TDNLKFIAGDMFQSIP 251 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~---------~~~v~~~~~d~~~~~p 251 (359)
+-+++.++ .....+|||+|||+|.++..+++++|+.+++++|.+. +++.|+. ..++++...|.++..+
T Consensus 218 rllL~~lp--~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~ 295 (378)
T PRK15001 218 RFFMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE 295 (378)
T ss_pred HHHHHhCC--cccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCC
Confidence 45566666 2334699999999999999999999999999999975 8877762 1368999999876543
Q ss_pred --CccEEEEcchhcc---CCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 252 --PADAFFFKAIFHA---FVDEDCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 252 --~~D~i~~~~vl~~---~~~~~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
.||+|+|+--+|. .+++...++++.++++|+| ||.++++-
T Consensus 296 ~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~Lkp---GG~L~iV~ 340 (378)
T PRK15001 296 PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKI---NGELYIVA 340 (378)
T ss_pred CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhccc---CCEEEEEE
Confidence 5999999755543 4556667899999999999 89999874
No 68
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.25 E-value=9.7e-11 Score=103.16 Aligned_cols=149 Identities=15% Similarity=0.119 Sum_probs=99.1
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----CCCceEeeCCCCCC---C-CCccEEEEcchh
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----TDNLKFIAGDMFQS---I-PPADAFFFKAIF 262 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----~~~v~~~~~d~~~~---~-p~~D~i~~~~vl 262 (359)
.+..+|||||||+|.++..+++. +.+++++|++. +++.+++ ..++++...|+.+. . ..||+|++++++
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 35689999999999999988875 56899999954 7666542 33567777777331 1 249999999999
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhh-hcCCcccCHHHHHHHHHHcCCc
Q 018205 263 HAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMV-AVRGSERTEKEWEKLFLDAGFS 341 (359)
Q Consensus 263 ~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~t~~~~~~ll~~aGf~ 341 (359)
++.++. ..+|+.+.++|+| ||.+++........................-.. .......+.++|.++++++||+
T Consensus 125 ~~~~~~--~~~l~~~~~~L~~---gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 199 (233)
T PRK05134 125 EHVPDP--ASFVRACAKLVKP---GGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLE 199 (233)
T ss_pred hccCCH--HHHHHHHHHHcCC---CcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCe
Confidence 998765 4599999999999 898887654321110000000000000000000 0112356899999999999999
Q ss_pred eeEEEEe
Q 018205 342 HFKITPV 348 (359)
Q Consensus 342 ~~~~~~~ 348 (359)
+++....
T Consensus 200 ~v~~~~~ 206 (233)
T PRK05134 200 VQDITGL 206 (233)
T ss_pred EeeeeeE
Confidence 9887643
No 69
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.24 E-value=1.3e-10 Score=100.58 Aligned_cols=132 Identities=13% Similarity=0.154 Sum_probs=98.7
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC------------------CCCCceEeeCCCCCC----
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP------------------DTDNLKFIAGDMFQS---- 249 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~------------------~~~~v~~~~~d~~~~---- 249 (359)
.+..+|||+|||.|..+..|+++ +.+|+++|+++ .++.+. ...+|++.++|+++.
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 45679999999999999999986 88999999965 666431 146789999999763
Q ss_pred CCCccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHH
Q 018205 250 IPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEK 329 (359)
Q Consensus 250 ~p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~ 329 (359)
.+.||.|+-+.++|+++.+...+.++.+.++|+| ||.++++.......... ..-...+.+
T Consensus 114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~p---gG~~~l~~~~~~~~~~~-----------------gPp~~~~~~ 173 (218)
T PRK13255 114 LADVDAVYDRAALIALPEEMRERYVQQLAALLPA---GCRGLLVTLDYPQEELA-----------------GPPFSVSDE 173 (218)
T ss_pred CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCC---CCeEEEEEEEeCCccCC-----------------CCCCCCCHH
Confidence 2358999999999999999889999999999999 88766655554322110 001235889
Q ss_pred HHHHHHHHcCCceeEEEE
Q 018205 330 EWEKLFLDAGFSHFKITP 347 (359)
Q Consensus 330 ~~~~ll~~aGf~~~~~~~ 347 (359)
++.++|.. +|.+..+..
T Consensus 174 el~~~~~~-~~~i~~~~~ 190 (218)
T PRK13255 174 EVEALYAG-CFEIELLER 190 (218)
T ss_pred HHHHHhcC-CceEEEeee
Confidence 99999853 266655544
No 70
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.23 E-value=4.1e-11 Score=99.16 Aligned_cols=143 Identities=16% Similarity=0.196 Sum_probs=99.0
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCCCCCceEeeCCCCC---CCC--CccEEEEcchhccCC
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPDTDNLKFIAGDMFQ---SIP--PADAFFFKAIFHAFV 266 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~~v~~~~~d~~~---~~p--~~D~i~~~~vl~~~~ 266 (359)
++..+|||+|||.|.++..|.+. .++++.|+|+.. .+..+. ...+.++++|+.+ .+| .||.|+++.+|.+..
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv-~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~ 89 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACV-ARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVR 89 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHH-HcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHh
Confidence 46799999999999999988885 589999999954 333322 4678999999944 355 399999999999997
Q ss_pred chHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhh----------hhhcCCcccCHHHHHHHHH
Q 018205 267 DEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLM----------MVAVRGSERTEKEWEKLFL 336 (359)
Q Consensus 267 ~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~g~~~t~~~~~~ll~ 336 (359)
+++ ++|+++.++ |...+|.=+++..... ....++.-.| .-..|-+..|.++++++.+
T Consensus 90 ~P~--~vL~EmlRV------gr~~IVsFPNFg~W~~-----R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~ 156 (193)
T PF07021_consen 90 RPD--EVLEEMLRV------GRRAIVSFPNFGHWRN-----RLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCR 156 (193)
T ss_pred HHH--HHHHHHHHh------cCeEEEEecChHHHHH-----HHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHH
Confidence 764 488888777 4455554333221110 1111100001 0112345779999999999
Q ss_pred HcCCceeEEEEeCC
Q 018205 337 DAGFSHFKITPVYG 350 (359)
Q Consensus 337 ~aGf~~~~~~~~~~ 350 (359)
+.|+++.+...+.+
T Consensus 157 ~~~i~I~~~~~~~~ 170 (193)
T PF07021_consen 157 ELGIRIEERVFLDG 170 (193)
T ss_pred HCCCEEEEEEEEcC
Confidence 99999999888744
No 71
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.23 E-value=8.1e-11 Score=102.99 Aligned_cols=146 Identities=12% Similarity=0.089 Sum_probs=98.9
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----CC-CceEeeCCCCC-C--C-CCccEEEEcchh
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----TD-NLKFIAGDMFQ-S--I-PPADAFFFKAIF 262 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----~~-~v~~~~~d~~~-~--~-p~~D~i~~~~vl 262 (359)
+..+|||+|||+|.++..+++.. .+++++|++. +++.++. .. ++++...|+.+ . . ..||+|++.+++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 46799999999999999888764 4699999954 7666552 22 58888888743 1 1 249999999999
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhh---cCCcccCHHHHHHHHHHcC
Q 018205 263 HAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVA---VRGSERTEKEWEKLFLDAG 339 (359)
Q Consensus 263 ~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~t~~~~~~ll~~aG 339 (359)
|+..+. ..+|++++++|+| ||.+++........... .......+-...... ......+.++|.++++++|
T Consensus 123 ~~~~~~--~~~l~~~~~~L~~---gG~l~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G 195 (224)
T TIGR01983 123 EHVPDP--QAFIRACAQLLKP---GGILFFSTINRTPKSYL--LAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAG 195 (224)
T ss_pred HhCCCH--HHHHHHHHHhcCC---CcEEEEEecCCCchHHH--HHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcC
Confidence 999766 4599999999999 89888765432211100 000000000000000 0123458899999999999
Q ss_pred CceeEEEEe
Q 018205 340 FSHFKITPV 348 (359)
Q Consensus 340 f~~~~~~~~ 348 (359)
|+++++...
T Consensus 196 ~~i~~~~~~ 204 (224)
T TIGR01983 196 LRVKDVKGL 204 (224)
T ss_pred CeeeeeeeE
Confidence 999888754
No 72
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.22 E-value=9.7e-11 Score=92.31 Aligned_cols=101 Identities=17% Similarity=0.276 Sum_probs=77.8
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC------CCCCceEeeCCCCC---CC-C
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP------DTDNLKFIAGDMFQ---SI-P 251 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~------~~~~v~~~~~d~~~---~~-p 251 (359)
.++..+. .....+|||+|||+|.++..+++++|+.+++++|+++ +++.++ ...+++++.+|... .. +
T Consensus 10 ~~~~~~~--~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (124)
T TIGR02469 10 LTLSKLR--LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLP 87 (124)
T ss_pred HHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcC
Confidence 3445554 4456799999999999999999999989999999955 777665 23578898888743 11 3
Q ss_pred CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 018205 252 PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 252 ~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
.||+|++....+ ...++++++++.|+| ||.+++.
T Consensus 88 ~~D~v~~~~~~~-----~~~~~l~~~~~~Lk~---gG~li~~ 121 (124)
T TIGR02469 88 EPDRVFIGGSGG-----LLQEILEAIWRRLRP---GGRIVLN 121 (124)
T ss_pred CCCEEEECCcch-----hHHHHHHHHHHHcCC---CCEEEEE
Confidence 599999976543 235799999999999 8887764
No 73
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.21 E-value=1.4e-11 Score=104.21 Aligned_cols=146 Identities=18% Similarity=0.253 Sum_probs=108.5
Q ss_pred CeEEEeCCCcchHHHHHHHHCCC--CeEEEeecc-cccccCCC-----CCCceEeeCCCCCC-----CC--CccEEEEcc
Q 018205 196 GSLVDVGGGTGSFARIISEAFPG--IKCTVLDLP-HVVPKVPD-----TDNLKFIAGDMFQS-----IP--PADAFFFKA 260 (359)
Q Consensus 196 ~~vlDvG~G~G~~~~~l~~~~p~--~~~~~~D~~-~~~~~a~~-----~~~v~~~~~d~~~~-----~p--~~D~i~~~~ 260 (359)
.+||+||||.|.+..-+++-.|+ +++.+.|.+ ..++..++ ..++...+.|+..+ .+ .+|+|++.+
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IF 152 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIF 152 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEE
Confidence 38999999999999999999888 899999995 47776553 34566666666332 11 399999999
Q ss_pred hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCc---ccCHHHHHHHHHH
Q 018205 261 IFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGS---ERTEKEWEKLFLD 337 (359)
Q Consensus 261 vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~t~~~~~~ll~~ 337 (359)
+|..++.+.....+++++++||| ||.|++-|+...+-.... +. ....++.+..+..+|. .++.+++.++|.+
T Consensus 153 vLSAi~pek~~~a~~nl~~llKP---GG~llfrDYg~~DlaqlR-F~-~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~ 227 (264)
T KOG2361|consen 153 VLSAIHPEKMQSVIKNLRTLLKP---GGSLLFRDYGRYDLAQLR-FK-KGQCISENFYVRGDGTRAYFFTEEELDELFTK 227 (264)
T ss_pred EEeccChHHHHHHHHHHHHHhCC---CcEEEEeecccchHHHHh-cc-CCceeecceEEccCCceeeeccHHHHHHHHHh
Confidence 99999999999999999999999 999999887765432110 00 0112233333334443 5799999999999
Q ss_pred cCCceeEEE
Q 018205 338 AGFSHFKIT 346 (359)
Q Consensus 338 aGf~~~~~~ 346 (359)
+||..++..
T Consensus 228 agf~~~~~~ 236 (264)
T KOG2361|consen 228 AGFEEVQLE 236 (264)
T ss_pred cccchhccc
Confidence 999976643
No 74
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.20 E-value=1.1e-10 Score=107.84 Aligned_cols=109 Identities=18% Similarity=0.311 Sum_probs=84.8
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----CCCceEeeCCCCCCCC-CccE
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----TDNLKFIAGDMFQSIP-PADA 255 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----~~~v~~~~~d~~~~~p-~~D~ 255 (359)
.+++.++ .....+|||+|||+|.++..+++++|+.+++++|++. +++.++. .-..+++..|.+...+ .||+
T Consensus 187 lLl~~l~--~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDl 264 (342)
T PRK09489 187 LLLSTLT--PHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDM 264 (342)
T ss_pred HHHHhcc--ccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccE
Confidence 4455555 2334689999999999999999999999999999965 8877762 2245678888866444 4999
Q ss_pred EEEcchhccCC---chHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 256 FFFKAIFHAFV---DEDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 256 i~~~~vl~~~~---~~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
|+++-.+|... .....++++++.+.|+| ||.++|+...
T Consensus 265 IvsNPPFH~g~~~~~~~~~~~i~~a~~~Lkp---gG~L~iVan~ 305 (342)
T PRK09489 265 IISNPPFHDGIQTSLDAAQTLIRGAVRHLNS---GGELRIVANA 305 (342)
T ss_pred EEECCCccCCccccHHHHHHHHHHHHHhcCc---CCEEEEEEeC
Confidence 99999888642 34557899999999999 9999887643
No 75
>PTZ00146 fibrillarin; Provisional
Probab=99.20 E-value=7.3e-10 Score=98.61 Aligned_cols=133 Identities=12% Similarity=0.095 Sum_probs=92.3
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeeccc-----ccccCCCCCCceEeeCCCCCC------CCCccEEEEc
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDLPH-----VVPKVPDTDNLKFIAGDMFQS------IPPADAFFFK 259 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~-----~~~~a~~~~~v~~~~~d~~~~------~p~~D~i~~~ 259 (359)
+.+..+|||+|||+|.++..+++.. +.-.|+++|+++ +++.++...+|.++..|+..+ .+.+|+|++.
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~D 209 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFAD 209 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEe
Confidence 5677899999999999999999986 345899999953 556665567899999998543 2359999887
Q ss_pred chhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcC
Q 018205 260 AIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAG 339 (359)
Q Consensus 260 ~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aG 339 (359)
.. .+ ++...++.++++.|+| ||.++|......-.... +.. ..++ ++. ++|+++|
T Consensus 210 va---~p-dq~~il~~na~r~LKp---GG~~vI~ika~~id~g~----------~pe-------~~f~-~ev-~~L~~~G 263 (293)
T PTZ00146 210 VA---QP-DQARIVALNAQYFLKN---GGHFIISIKANCIDSTA----------KPE-------VVFA-SEV-QKLKKEG 263 (293)
T ss_pred CC---Cc-chHHHHHHHHHHhccC---CCEEEEEEeccccccCC----------CHH-------HHHH-HHH-HHHHHcC
Confidence 64 12 2334577789999999 89998832111111000 000 0112 444 7889999
Q ss_pred CceeEEEEeCC
Q 018205 340 FSHFKITPVYG 350 (359)
Q Consensus 340 f~~~~~~~~~~ 350 (359)
|+.++...+..
T Consensus 264 F~~~e~v~L~P 274 (293)
T PTZ00146 264 LKPKEQLTLEP 274 (293)
T ss_pred CceEEEEecCC
Confidence 99998888743
No 76
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.18 E-value=7.9e-11 Score=98.41 Aligned_cols=98 Identities=20% Similarity=0.395 Sum_probs=78.3
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCCCCC--CccEEEEcchhcc
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQSIP--PADAFFFKAIFHA 264 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~~~p--~~D~i~~~~vl~~ 264 (359)
...+|||+|||+|.++..++++.|+.+++++|++. +++.++. ...++++..|.++..+ .||+|+++--+|.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~~ 110 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFHA 110 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SBT
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchhc
Confidence 57899999999999999999999999999999954 7777652 2238999999988665 4999999877665
Q ss_pred CCc---hHHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 265 FVD---EDCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 265 ~~~---~~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
-.+ +-..++++++.++|+| ||.++++-
T Consensus 111 ~~~~~~~~~~~~i~~a~~~Lk~---~G~l~lv~ 140 (170)
T PF05175_consen 111 GGDDGLDLLRDFIEQARRYLKP---GGRLFLVI 140 (170)
T ss_dssp TSHCHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred ccccchhhHHHHHHHHHHhccC---CCEEEEEe
Confidence 543 3457899999999999 89987744
No 77
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=99.17 E-value=4.7e-10 Score=98.07 Aligned_cols=155 Identities=19% Similarity=0.284 Sum_probs=114.6
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCC--CeEEEeeccc-ccccCC------CCCCc-eEeeCCCCCC------CCCccEE
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPG--IKCTVLDLPH-VVPKVP------DTDNL-KFIAGDMFQS------IPPADAF 256 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~--~~~~~~D~~~-~~~~a~------~~~~v-~~~~~d~~~~------~p~~D~i 256 (359)
..+.+||||.||+|.+....+..+|. .++...|.++ -++..+ ....+ +|.++|.|+. .|.++++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 46789999999999999999999997 6899999955 666554 23444 9999999873 3568999
Q ss_pred EEcchhccCCchH-HHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCC-----cccCHHH
Q 018205 257 FFKAIFHAFVDED-CLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRG-----SERTEKE 330 (359)
Q Consensus 257 ~~~~vl~~~~~~~-~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----~~~t~~~ 330 (359)
+.+.++..++|.+ +...|+.+.+++.| ||.++.....++.+.. +....+..+-+| +.||..|
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~p---gG~lIyTgQPwHPQle---------~IAr~LtsHr~g~~WvMRrRsq~E 281 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEP---GGYLIYTGQPWHPQLE---------MIARVLTSHRDGKAWVMRRRSQAE 281 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCC---CcEEEEcCCCCCcchH---------HHHHHHhcccCCCceEEEecCHHH
Confidence 9999999999876 55579999999999 8877775544443321 111111112222 3589999
Q ss_pred HHHHHHHcCCceeEEEE-eCCceeEEEEeC
Q 018205 331 WEKLFLDAGFSHFKITP-VYGIKSLIEVYP 359 (359)
Q Consensus 331 ~~~ll~~aGf~~~~~~~-~~~~~~vi~~~~ 359 (359)
+.+|+++|||.-++..- -.+.++|..|++
T Consensus 282 mD~Lv~~aGF~K~~q~ID~~GIFTVSlA~r 311 (311)
T PF12147_consen 282 MDQLVEAAGFEKIDQRIDEWGIFTVSLARR 311 (311)
T ss_pred HHHHHHHcCCchhhheeccCCceEEEeecC
Confidence 99999999999655543 367788887764
No 78
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.16 E-value=4.5e-10 Score=100.01 Aligned_cols=124 Identities=20% Similarity=0.342 Sum_probs=92.0
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCCCCC--CccEEEEcchh--
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQSIP--PADAFFFKAIF-- 262 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~~~p--~~D~i~~~~vl-- 262 (359)
...+|||+|||+|.++..+++.+|+.+++++|++. +++.++. .++++++.+|+++.++ .||+|+++--.
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCCCCc
Confidence 45699999999999999999999999999999954 7776652 3469999999976553 49999985322
Q ss_pred ----ccCCch------------------HHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhh
Q 018205 263 ----HAFVDE------------------DCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVA 320 (359)
Q Consensus 263 ----~~~~~~------------------~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (359)
+.+..+ ....+++++.++|+| ||.+++...
T Consensus 167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~---gG~~~~~~~------------------------- 218 (251)
T TIGR03534 167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKP---GGWLLLEIG------------------------- 218 (251)
T ss_pred hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhccc---CCEEEEEEC-------------------------
Confidence 222111 123689999999999 888776210
Q ss_pred cCCcccCHHHHHHHHHHcCCceeEEEEeC
Q 018205 321 VRGSERTEKEWEKLFLDAGFSHFKITPVY 349 (359)
Q Consensus 321 ~~g~~~t~~~~~~ll~~aGf~~~~~~~~~ 349 (359)
....+++.++|+++||..+++....
T Consensus 219 ----~~~~~~~~~~l~~~gf~~v~~~~d~ 243 (251)
T TIGR03534 219 ----YDQGEAVRALFEAAGFADVETRKDL 243 (251)
T ss_pred ----ccHHHHHHHHHHhCCCCceEEEeCC
Confidence 0124568888999999988877653
No 79
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.16 E-value=3.8e-10 Score=100.29 Aligned_cols=124 Identities=19% Similarity=0.223 Sum_probs=89.6
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC---C----CCceEeeCCCCCCCCCccEEEEcchhcc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD---T----DNLKFIAGDMFQSIPPADAFFFKAIFHA 264 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~---~----~~v~~~~~d~~~~~p~~D~i~~~~vl~~ 264 (359)
.+..+|||+|||+|.++..+++..+ .+++++|+++ +++.|++ . .++.+..+|. .||+|+++...
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-----~fD~Vvani~~-- 189 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-----KADVIVANILA-- 189 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-----CcCEEEEcCcH--
Confidence 4578999999999999988776543 3699999955 8877763 1 2233322221 59999986432
Q ss_pred CCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCceeE
Q 018205 265 FVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFK 344 (359)
Q Consensus 265 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~ 344 (359)
+....+++++.++|+| ||.+++...... ..+++.+.+++.||++.+
T Consensus 190 ---~~~~~l~~~~~~~Lkp---gG~lilsgi~~~----------------------------~~~~v~~~l~~~Gf~~~~ 235 (250)
T PRK00517 190 ---NPLLELAPDLARLLKP---GGRLILSGILEE----------------------------QADEVLEAYEEAGFTLDE 235 (250)
T ss_pred ---HHHHHHHHHHHHhcCC---CcEEEEEECcHh----------------------------hHHHHHHHHHHCCCEEEE
Confidence 3345789999999999 898888542211 245678899999999999
Q ss_pred EEEeCCceeEEEEe
Q 018205 345 ITPVYGIKSLIEVY 358 (359)
Q Consensus 345 ~~~~~~~~~vi~~~ 358 (359)
+.....+.+++.-+
T Consensus 236 ~~~~~~W~~~~~~~ 249 (250)
T PRK00517 236 VLERGEWVALVGKK 249 (250)
T ss_pred EEEeCCEEEEEEEe
Confidence 99888888776544
No 80
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.12 E-value=1e-09 Score=94.73 Aligned_cols=104 Identities=15% Similarity=0.248 Sum_probs=78.0
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeecccccccCCCCCCceEeeCCCCCC---------CC-
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDLPHVVPKVPDTDNLKFIAGDMFQS---------IP- 251 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~---------~p- 251 (359)
.+.+.+. .+.+..+|||+|||+|.++..+++.. +..+++++|++++.. ..+++++++|+.+. .+
T Consensus 41 ~~~~~~~-~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~~----~~~v~~i~~D~~~~~~~~~i~~~~~~ 115 (209)
T PRK11188 41 EIQQSDK-LFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMDP----IVGVDFLQGDFRDELVLKALLERVGD 115 (209)
T ss_pred HHHHHhc-cCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccccC----CCCcEEEecCCCChHHHHHHHHHhCC
Confidence 4445554 24567899999999999999999986 456999999976432 24689999999652 22
Q ss_pred -CccEEEEcchhccCCchH---------HHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 252 -PADAFFFKAIFHAFVDED---------CLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 252 -~~D~i~~~~vl~~~~~~~---------~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
.||+|++....+...++. ...+|+.++++|+| ||.+++..
T Consensus 116 ~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~Lkp---GG~~vi~~ 165 (209)
T PRK11188 116 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAP---GGSFVVKV 165 (209)
T ss_pred CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCC---CCEEEEEE
Confidence 499999977665544321 24689999999999 89888864
No 81
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.12 E-value=1.2e-10 Score=100.14 Aligned_cols=98 Identities=17% Similarity=0.196 Sum_probs=76.0
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCC-CC-C--CC--CccEEEEcc
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDM-FQ-S--IP--PADAFFFKA 260 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~-~~-~--~p--~~D~i~~~~ 260 (359)
...+|||+|||+|.++..+++.+|+.+++++|++. +++.|++ ..+++++.+|+ .. + ++ .||+|++.+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 56899999999999999999999999999999954 8876652 36799999998 32 2 33 399999865
Q ss_pred hhccCC------chHHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 261 IFHAFV------DEDCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 261 vl~~~~------~~~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
...... ......+|++++++|+| ||.+++..
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~Lkp---gG~l~i~~ 156 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKP---GGEIHFAT 156 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCC---CCEEEEEc
Confidence 442211 11135699999999999 89998865
No 82
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.10 E-value=2.4e-09 Score=96.67 Aligned_cols=134 Identities=17% Similarity=0.330 Sum_probs=96.5
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCCCCC--CccEEEEcchh-
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQSIP--PADAFFFKAIF- 262 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~~~p--~~D~i~~~~vl- 262 (359)
.+..+|||+|||+|..+..++...|..+++++|++. +++.+++ ..+++++.+|++++.+ .||+|+++--.
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy~ 186 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPPYI 186 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCCcC
Confidence 456799999999999999999999999999999954 7776652 3579999999977554 59999985211
Q ss_pred -----ccCC------------------chHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhh
Q 018205 263 -----HAFV------------------DEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMV 319 (359)
Q Consensus 263 -----~~~~------------------~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (359)
+... -+...++++++.++|+| ||.+++ +...
T Consensus 187 ~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~---gG~l~~-e~g~---------------------- 240 (275)
T PRK09328 187 PEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKP---GGWLLL-EIGY---------------------- 240 (275)
T ss_pred CcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhccc---CCEEEE-EECc----------------------
Confidence 1111 12235788999999999 887776 2100
Q ss_pred hcCCcccCHHHHHHHHHHcCCceeEEE-EeCCceeEEEEe
Q 018205 320 AVRGSERTEKEWEKLFLDAGFSHFKIT-PVYGIKSLIEVY 358 (359)
Q Consensus 320 ~~~g~~~t~~~~~~ll~~aGf~~~~~~-~~~~~~~vi~~~ 358 (359)
...+++.+++.+.||..+++. ...+...++.++
T Consensus 241 ------~~~~~~~~~l~~~gf~~v~~~~d~~~~~r~~~~~ 274 (275)
T PRK09328 241 ------DQGEAVRALLAAAGFADVETRKDLAGRDRVVLGR 274 (275)
T ss_pred ------hHHHHHHHHHHhCCCceeEEecCCCCCceEEEEE
Confidence 013458888999999876664 335566666554
No 83
>PRK14968 putative methyltransferase; Provisional
Probab=99.10 E-value=2.5e-09 Score=90.76 Aligned_cols=123 Identities=18% Similarity=0.299 Sum_probs=89.8
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCC-ceEeeCCCCCCCC--CccEEEEcch
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDN-LKFIAGDMFQSIP--PADAFFFKAI 261 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~-v~~~~~d~~~~~p--~~D~i~~~~v 261 (359)
.+..+|||+|||+|.++..+++. +.+++++|+++ +++.+++ .++ +.++.+|+.+.++ .||+|+++..
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPP 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCC
Confidence 45679999999999999999987 67899999954 7776641 122 8899999876544 4999998654
Q ss_pred hccCC-------------------chHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcC
Q 018205 262 FHAFV-------------------DEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVR 322 (359)
Q Consensus 262 l~~~~-------------------~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (359)
+...+ ......+++++.++|+| ||.+++.....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~---gG~~~~~~~~~------------------------- 151 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKP---GGRILLLQSSL------------------------- 151 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCC---CeEEEEEEccc-------------------------
Confidence 43211 12245689999999999 88887753211
Q ss_pred CcccCHHHHHHHHHHcCCceeEEEEe
Q 018205 323 GSERTEKEWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 323 g~~~t~~~~~~ll~~aGf~~~~~~~~ 348 (359)
...+++.++++++||++..+...
T Consensus 152 ---~~~~~l~~~~~~~g~~~~~~~~~ 174 (188)
T PRK14968 152 ---TGEDEVLEYLEKLGFEAEVVAEE 174 (188)
T ss_pred ---CCHHHHHHHHHHCCCeeeeeeec
Confidence 12356778999999998776544
No 84
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=3.8e-09 Score=93.58 Aligned_cols=109 Identities=18% Similarity=0.308 Sum_probs=86.8
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC---C---CCceEeeCCCCCCCC-Cc
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD---T---DNLKFIAGDMFQSIP-PA 253 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~---~---~~v~~~~~d~~~~~p-~~ 253 (359)
+-+++.++ .....+|+|+|||.|.++..+++.+|+.+++.+|.+. .++.++. . .+..+...|.+++.. .|
T Consensus 148 ~lLl~~l~--~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kf 225 (300)
T COG2813 148 RLLLETLP--PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKF 225 (300)
T ss_pred HHHHHhCC--ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccccccc
Confidence 56677787 4444599999999999999999999999999999976 8887773 1 222577788877655 59
Q ss_pred cEEEEcchhccCC---chHHHHHHHHHHHhcccCCCCcEEEEEee
Q 018205 254 DAFFFKAIFHAFV---DEDCLKILKRCREAIASRGDRGKVIIIDI 295 (359)
Q Consensus 254 D~i~~~~vl~~~~---~~~~~~~L~~~~~~L~p~~~gG~lli~~~ 295 (359)
|.|+|+==+|.-. +.-..+++....+.|++ ||.|.|+-.
T Consensus 226 d~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~---gGeL~iVan 267 (300)
T COG2813 226 DLIISNPPFHAGKAVVHSLAQEIIAAAARHLKP---GGELWIVAN 267 (300)
T ss_pred cEEEeCCCccCCcchhHHHHHHHHHHHHHhhcc---CCEEEEEEc
Confidence 9999998887532 22335899999999999 999999775
No 85
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.07 E-value=2.4e-09 Score=88.17 Aligned_cols=102 Identities=23% Similarity=0.325 Sum_probs=82.2
Q ss_pred HHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCC------CCCCceEeeCCCCC---CCCCc
Q 018205 184 IVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVP------DTDNLKFIAGDMFQ---SIPPA 253 (359)
Q Consensus 184 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------~~~~v~~~~~d~~~---~~p~~ 253 (359)
.+.++. ..+..+++|||||+|..+..++...|..+++++|. +++++..+ ..++++++.+|..+ ..|.+
T Consensus 26 ~ls~L~--~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~ 103 (187)
T COG2242 26 TLSKLR--PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSP 103 (187)
T ss_pred HHHhhC--CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCC
Confidence 356666 67789999999999999999999999999999998 44665444 36899999999855 34569
Q ss_pred cEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 254 DAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 254 D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
|.|++... -. ...+|+.+...|+| ||+|++.-..
T Consensus 104 daiFIGGg-~~-----i~~ile~~~~~l~~---ggrlV~nait 137 (187)
T COG2242 104 DAIFIGGG-GN-----IEEILEAAWERLKP---GGRLVANAIT 137 (187)
T ss_pred CEEEECCC-CC-----HHHHHHHHHHHcCc---CCeEEEEeec
Confidence 99999876 22 25699999999999 8998885433
No 86
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.07 E-value=5.5e-10 Score=92.30 Aligned_cols=128 Identities=20% Similarity=0.255 Sum_probs=86.3
Q ss_pred EEeeccc-ccccCCC---------CCCceEeeCCCCC-CCC--CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCc
Q 018205 222 TVLDLPH-VVPKVPD---------TDNLKFIAGDMFQ-SIP--PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRG 288 (359)
Q Consensus 222 ~~~D~~~-~~~~a~~---------~~~v~~~~~d~~~-~~p--~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG 288 (359)
+|+|+++ |++.|++ ..+++++.+|+.+ +++ .||+|++..++|++++. .++|++++++|+| ||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~--~~~l~ei~rvLkp---GG 75 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDR--LRAMKEMYRVLKP---GS 75 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCH--HHHHHHHHHHcCc---Ce
Confidence 4889965 8887741 2469999999955 444 39999999999999765 5699999999999 99
Q ss_pred EEEEEeeecCCCCcchHHHHHHHhhhhhhh-----hh----------cCCcccCHHHHHHHHHHcCCceeEEEEeC-Cce
Q 018205 289 KVIIIDIVINEKKEDAQLTEAKLLYDMLMM-----VA----------VRGSERTEKEWEKLFLDAGFSHFKITPVY-GIK 352 (359)
Q Consensus 289 ~lli~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~----------~~g~~~t~~~~~~ll~~aGf~~~~~~~~~-~~~ 352 (359)
.++|.|...++..... .... ........ .. .-....+.+++.++|+++||+.+..+... +..
T Consensus 76 ~l~i~d~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~g~~ 153 (160)
T PLN02232 76 RVSILDFNKSNQSVTT-FMQG-WMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGGFM 153 (160)
T ss_pred EEEEEECCCCChHHHH-HHHH-HHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcchHh
Confidence 9999998765432110 0000 00000000 00 00124689999999999999988887774 333
Q ss_pred eEEE
Q 018205 353 SLIE 356 (359)
Q Consensus 353 ~vi~ 356 (359)
.+..
T Consensus 154 ~~~~ 157 (160)
T PLN02232 154 GNLV 157 (160)
T ss_pred HeeE
Confidence 4443
No 87
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.06 E-value=1.7e-09 Score=93.78 Aligned_cols=133 Identities=12% Similarity=0.237 Sum_probs=99.3
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCCC---C-
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQS---I- 250 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~~---~- 250 (359)
-++..+.. .+...+|||+|||+|..+..++++.++++++++|+.+ +.+.|++ .+|++++++|+.+- .
T Consensus 34 iLL~~~~~-~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~ 112 (248)
T COG4123 34 ILLAAFAP-VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALV 112 (248)
T ss_pred HHHHhhcc-cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhccc
Confidence 34444442 3448999999999999999999999889999999955 7777762 68999999999441 2
Q ss_pred -CCccEEEEcchhccCC----------------chHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhh
Q 018205 251 -PPADAFFFKAIFHAFV----------------DEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLY 313 (359)
Q Consensus 251 -p~~D~i~~~~vl~~~~----------------~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~ 313 (359)
..||+|+|+==.+..+ .-....+++.+.++|+| ||.+.++-...
T Consensus 113 ~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~---~G~l~~V~r~e---------------- 173 (248)
T COG4123 113 FASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKP---GGRLAFVHRPE---------------- 173 (248)
T ss_pred ccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccC---CCEEEEEecHH----------------
Confidence 2499999874333222 12245789999999999 89998865210
Q ss_pred hhhhhhhcCCcccCHHHHHHHHHHcCCceeEEEEe
Q 018205 314 DMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 314 ~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~~~~~ 348 (359)
...+|.+++.+.+|...++..+
T Consensus 174 -------------rl~ei~~~l~~~~~~~k~i~~V 195 (248)
T COG4123 174 -------------RLAEIIELLKSYNLEPKRIQFV 195 (248)
T ss_pred -------------HHHHHHHHHHhcCCCceEEEEe
Confidence 2356778888889988888776
No 88
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.04 E-value=5.1e-09 Score=97.67 Aligned_cols=134 Identities=15% Similarity=0.229 Sum_probs=94.1
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----CCCceEeeCCCCCC-CC---CccEEEEcchh
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----TDNLKFIAGDMFQS-IP---PADAFFFKAIF 262 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----~~~v~~~~~d~~~~-~p---~~D~i~~~~vl 262 (359)
++..+|||+|||+|.++..+++..|+.+++++|++. +++.|++ ..+++++.+|+++. .+ .||+|+++--.
T Consensus 250 ~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPY 329 (423)
T PRK14966 250 PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPY 329 (423)
T ss_pred CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCC
Confidence 345699999999999999999999999999999954 8887762 34799999999653 22 49999985321
Q ss_pred ccCC-----------------------chHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhh
Q 018205 263 HAFV-----------------------DEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMV 319 (359)
Q Consensus 263 ~~~~-----------------------~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (359)
..-. -+-..++++.+.+.|+| ||.+++ +....
T Consensus 330 I~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~Lkp---gG~lil-EiG~~--------------------- 384 (423)
T PRK14966 330 IENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAE---GGFLLL-EHGFD--------------------- 384 (423)
T ss_pred CCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCC---CcEEEE-EECcc---------------------
Confidence 0000 01134677788888998 776554 32110
Q ss_pred hcCCcccCHHHHHHHHHHcCCceeEEEEe-CCceeEEEEe
Q 018205 320 AVRGSERTEKEWEKLFLDAGFSHFKITPV-YGIKSLIEVY 358 (359)
Q Consensus 320 ~~~g~~~t~~~~~~ll~~aGf~~~~~~~~-~~~~~vi~~~ 358 (359)
..+.+.+++++.||..+++... .+...++.++
T Consensus 385 -------Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~~ 417 (423)
T PRK14966 385 -------QGAAVRGVLAENGFSGVETLPDLAGLDRVTLGK 417 (423)
T ss_pred -------HHHHHHHHHHHCCCcEEEEEEcCCCCcEEEEEE
Confidence 2356778889999998777655 5556666553
No 89
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.03 E-value=1.8e-09 Score=91.47 Aligned_cols=150 Identities=13% Similarity=0.176 Sum_probs=98.1
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------------------------
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------------------------- 235 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------------------------- 235 (359)
+..++.++..+-.+..+|||||.+|.++..+++.+....+.|+|+.. .++.|++
T Consensus 46 D~rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~ 125 (288)
T KOG2899|consen 46 DPRLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFG 125 (288)
T ss_pred ChhhhhccccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccc
Confidence 45566666556678999999999999999999999888999999954 7766651
Q ss_pred ----------------CCCceEee-------CCCCC-CCCCccEEEEcch----hccCCchHHHHHHHHHHHhcccCCCC
Q 018205 236 ----------------TDNLKFIA-------GDMFQ-SIPPADAFFFKAI----FHAFVDEDCLKILKRCREAIASRGDR 287 (359)
Q Consensus 236 ----------------~~~v~~~~-------~d~~~-~~p~~D~i~~~~v----l~~~~~~~~~~~L~~~~~~L~p~~~g 287 (359)
.+++.++. .||++ ..|.||+|+|-.+ =-+|.|+-..+++++++++|.| |
T Consensus 126 ~is~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~p---g 202 (288)
T KOG2899|consen 126 PISQRNEADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHP---G 202 (288)
T ss_pred cccccccccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCc---C
Confidence 01222222 23433 2456999997543 2357899999999999999999 5
Q ss_pred cEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCc
Q 018205 288 GKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFS 341 (359)
Q Consensus 288 G~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~ 341 (359)
| ++|+|+-.... |........-.-+ ..-.-....+.+..++.+.+..
T Consensus 203 G-iLvvEPQpWks-----Y~kaar~~e~~~~-ny~~i~lkp~~f~~~l~q~~vg 249 (288)
T KOG2899|consen 203 G-ILVVEPQPWKS-----YKKAARRSEKLAA-NYFKIFLKPEDFEDWLNQIVVG 249 (288)
T ss_pred c-EEEEcCCchHH-----HHHHHHHHHHhhc-CccceecCHHHHHhhhhhhhhh
Confidence 5 55555443322 3222221111100 0112345789999999998433
No 90
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.02 E-value=3.6e-09 Score=95.83 Aligned_cols=94 Identities=15% Similarity=0.323 Sum_probs=73.5
Q ss_pred CeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCCCCC--CccEEEEc------
Q 018205 196 GSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQSIP--PADAFFFK------ 259 (359)
Q Consensus 196 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~~~p--~~D~i~~~------ 259 (359)
.+|||+|||+|.++..++..+|+.+++++|++. +++.|+. .++++++.+|++++++ .||+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~ 195 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDE 195 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCc
Confidence 689999999999999999999999999999954 8877662 2469999999987654 49999985
Q ss_pred -------chhccCCc----------hHHHHHHHHHHHhcccCCCCcEEEE
Q 018205 260 -------AIFHAFVD----------EDCLKILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 260 -------~vl~~~~~----------~~~~~~L~~~~~~L~p~~~gG~lli 292 (359)
.++++-+. +....+++++.++|+| ||.+++
T Consensus 196 ~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~---gG~l~~ 242 (284)
T TIGR00536 196 EDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKP---NGFLVC 242 (284)
T ss_pred chhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccC---CCEEEE
Confidence 22222221 1456789999999999 776554
No 91
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.02 E-value=3.3e-10 Score=95.09 Aligned_cols=161 Identities=9% Similarity=0.155 Sum_probs=107.5
Q ss_pred HHHHHHHHHhhcccc----h-HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCCCCCc
Q 018205 166 FNSIYNQAMASDSQL----A-NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPDTDNL 239 (359)
Q Consensus 166 ~~~~~~~~m~~~~~~----~-~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~~v 239 (359)
.+++|.......-.. . .+++.+.+ ..+..++||+|||||.+...|...- -+.+|+|+|+ |+++|.+..-.
T Consensus 94 ~Ae~Fd~~LVdkL~Y~vP~~l~emI~~~~--~g~F~~~lDLGCGTGL~G~~lR~~a--~~ltGvDiS~nMl~kA~eKg~Y 169 (287)
T COG4976 94 YAERFDHILVDKLGYSVPELLAEMIGKAD--LGPFRRMLDLGCGTGLTGEALRDMA--DRLTGVDISENMLAKAHEKGLY 169 (287)
T ss_pred HHHHHHHHHHHHhcCccHHHHHHHHHhcc--CCccceeeecccCcCcccHhHHHHH--hhccCCchhHHHHHHHHhccch
Confidence 345565544432222 1 45555555 3447899999999999999887763 3699999987 99998853322
Q ss_pred -eEeeCC---CCC--CCCCccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhh
Q 018205 240 -KFIAGD---MFQ--SIPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLY 313 (359)
Q Consensus 240 -~~~~~d---~~~--~~p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~ 313 (359)
.+.+.| |.. ....||+|+...||.++.+- ..++--+...|+| ||.+.+.....+....-
T Consensus 170 D~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~L--e~~~~~aa~~L~~---gGlfaFSvE~l~~~~~f---------- 234 (287)
T COG4976 170 DTLYVAEAVLFLEDLTQERFDLIVAADVLPYLGAL--EGLFAGAAGLLAP---GGLFAFSVETLPDDGGF---------- 234 (287)
T ss_pred HHHHHHHHHHHhhhccCCcccchhhhhHHHhhcch--hhHHHHHHHhcCC---CceEEEEecccCCCCCe----------
Confidence 222222 332 22359999999999999765 4599999999999 88777765555443210
Q ss_pred hhhhhhhcCCcccCHHHHHHHHHHcCCceeEEEEe
Q 018205 314 DMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 314 ~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~~~~~ 348 (359)
++........+..-..++++..||.++.+.++
T Consensus 235 ---~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~t 266 (287)
T COG4976 235 ---VLGPSQRYAHSESYVRALLAASGLEVIAIEDT 266 (287)
T ss_pred ---ecchhhhhccchHHHHHHHHhcCceEEEeecc
Confidence 10011112235677899999999999999876
No 92
>PHA03411 putative methyltransferase; Provisional
Probab=99.01 E-value=2.2e-09 Score=94.48 Aligned_cols=123 Identities=15% Similarity=0.173 Sum_probs=90.0
Q ss_pred CCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC-CCCceEeeCCCCCCC--CCccEEEEcchhccCCchH-
Q 018205 195 LGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD-TDNLKFIAGDMFQSI--PPADAFFFKAIFHAFVDED- 269 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~-~~~v~~~~~d~~~~~--p~~D~i~~~~vl~~~~~~~- 269 (359)
..+|||+|||+|.++..++++.+..+++++|++ .+++.++. .++++++.+|+++.. ..||+|+++--+++.+..+
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~~d~ 144 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISNPPFGKINTTDT 144 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEcCCccccCchhh
Confidence 479999999999999999888877899999995 48887764 467999999997632 2499999987777654332
Q ss_pred -----------------HHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHH
Q 018205 270 -----------------CLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWE 332 (359)
Q Consensus 270 -----------------~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~ 332 (359)
..++++.+...|+| +|.++++ .... .+++ ...+.++++
T Consensus 145 ~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p---~G~~~~~---yss~----------~~y~---------~sl~~~~y~ 199 (279)
T PHA03411 145 KDVFEYTGGEFEFKVMTLGQKFADVGYFIVP---TGSAGFA---YSGR----------PYYD---------GTMKSNKYL 199 (279)
T ss_pred hhhhhhccCccccccccHHHHHhhhHheecC---CceEEEE---Eecc----------cccc---------ccCCHHHHH
Confidence 13567777888888 7766665 1110 1121 124788899
Q ss_pred HHHHHcCCce
Q 018205 333 KLFLDAGFSH 342 (359)
Q Consensus 333 ~ll~~aGf~~ 342 (359)
++++++||..
T Consensus 200 ~~l~~~g~~~ 209 (279)
T PHA03411 200 KWSKQTGLVT 209 (279)
T ss_pred HHHHhcCcEe
Confidence 9999999874
No 93
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.01 E-value=1.2e-09 Score=94.08 Aligned_cols=98 Identities=16% Similarity=0.195 Sum_probs=74.4
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCC-CCeEEEeecc-cccccCCC-------CCCceEeeCCCCCCCC--
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFP-GIKCTVLDLP-HVVPKVPD-------TDNLKFIAGDMFQSIP-- 251 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~-~~~~~a~~-------~~~v~~~~~d~~~~~p-- 251 (359)
.+++.+. ..+..+|||||||+|..+..+++..+ ..+++++|++ ++++.|++ .++++++.+|+.+..+
T Consensus 63 ~~~~~l~--~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~ 140 (205)
T PRK13944 63 MMCELIE--PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKH 140 (205)
T ss_pred HHHHhcC--CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccC
Confidence 3445554 45668999999999999999998764 5689999995 47776652 2468999999965333
Q ss_pred -CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 018205 252 -PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 252 -~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
.||+|++...+++++ +++.+.|+| ||.+++.
T Consensus 141 ~~fD~Ii~~~~~~~~~--------~~l~~~L~~---gG~lvi~ 172 (205)
T PRK13944 141 APFDAIIVTAAASTIP--------SALVRQLKD---GGVLVIP 172 (205)
T ss_pred CCccEEEEccCcchhh--------HHHHHhcCc---CcEEEEE
Confidence 499999998876553 356788999 8988774
No 94
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.00 E-value=9.2e-10 Score=99.18 Aligned_cols=90 Identities=17% Similarity=0.283 Sum_probs=71.4
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCC---CeEEEeeccc-ccccCCC-CCCceEeeCCCCC-CCC--CccEEEEcchhccC
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPG---IKCTVLDLPH-VVPKVPD-TDNLKFIAGDMFQ-SIP--PADAFFFKAIFHAF 265 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~---~~~~~~D~~~-~~~~a~~-~~~v~~~~~d~~~-~~p--~~D~i~~~~vl~~~ 265 (359)
+..+|||+|||+|.++..+++..|. .+++++|++. +++.|.+ .+++.+..+|..+ +++ .||+|++...
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~---- 160 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA---- 160 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC----
Confidence 4578999999999999999988764 3789999965 8887763 4678999999865 444 4999997543
Q ss_pred CchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 018205 266 VDEDCLKILKRCREAIASRGDRGKVIIIDI 295 (359)
Q Consensus 266 ~~~~~~~~L~~~~~~L~p~~~gG~lli~~~ 295 (359)
+ ..+++++++|+| ||.++++.+
T Consensus 161 ~-----~~~~e~~rvLkp---gG~li~~~p 182 (272)
T PRK11088 161 P-----CKAEELARVVKP---GGIVITVTP 182 (272)
T ss_pred C-----CCHHHHHhhccC---CCEEEEEeC
Confidence 1 246889999999 999998764
No 95
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.00 E-value=1.2e-09 Score=93.26 Aligned_cols=97 Identities=15% Similarity=0.243 Sum_probs=74.8
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCC----CCC--CccEEEEcc
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQ----SIP--PADAFFFKA 260 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~----~~p--~~D~i~~~~ 260 (359)
...+|||||||+|.++..+++++|+.+++++|++. +++.|.. ..+++++.+|+.+ .++ .+|.|+++.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 45799999999999999999999999999999955 7776652 3589999999853 133 388888765
Q ss_pred hhccCCchH-------HHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 261 IFHAFVDED-------CLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 261 vl~~~~~~~-------~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
-.. |+... ...+++++.++|+| ||.+++..
T Consensus 96 pdp-w~k~~h~~~r~~~~~~l~~~~r~Lkp---gG~l~~~t 132 (194)
T TIGR00091 96 PDP-WPKKRHNKRRITQPHFLKEYANVLKK---GGVIHFKT 132 (194)
T ss_pred CCc-CCCCCccccccCCHHHHHHHHHHhCC---CCEEEEEe
Confidence 432 22111 14689999999999 89988865
No 96
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.99 E-value=1.4e-09 Score=98.35 Aligned_cols=96 Identities=19% Similarity=0.380 Sum_probs=74.0
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCCCCC--CccEEEEcc---
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQSIP--PADAFFFKA--- 260 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~~~p--~~D~i~~~~--- 260 (359)
+..+|||+|||+|.++..+++.+|+.+++++|++. +++.|+. .++++++.+|+++.++ .||+|+++-
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYV 200 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCC
Confidence 45799999999999999999999999999999954 8877762 2579999999976555 499999851
Q ss_pred ----------hhccCCc----------hHHHHHHHHHHHhcccCCCCcEEEE
Q 018205 261 ----------IFHAFVD----------EDCLKILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 261 ----------vl~~~~~----------~~~~~~L~~~~~~L~p~~~gG~lli 292 (359)
.+++-+. +....+++++.+.|+| ||.+++
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~---gG~l~~ 249 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNE---NGVLVV 249 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCC---CCEEEE
Confidence 0111111 1236789999999999 787665
No 97
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.98 E-value=1.7e-09 Score=87.69 Aligned_cols=125 Identities=17% Similarity=0.209 Sum_probs=92.5
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCCC--CC-CccEEEEcchh
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQS--IP-PADAFFFKAIF 262 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~~--~p-~~D~i~~~~vl 262 (359)
...+|||+|||+|.++..|++..-....+|+|.++ .++.|+. .+.|+|.+.|++++ .+ .||+|+=...+
T Consensus 67 ~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~ 146 (227)
T KOG1271|consen 67 QADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTL 146 (227)
T ss_pred cccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCce
Confidence 34499999999999999999885444689999965 7776651 45699999999874 33 49998855544
Q ss_pred ccC------CchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHH
Q 018205 263 HAF------VDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFL 336 (359)
Q Consensus 263 ~~~------~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~ 336 (359)
..+ ++......+..+.+.|+| ||.++|...+ +|.+|+.+.|+
T Consensus 147 DAisLs~d~~~~r~~~Y~d~v~~ll~~---~gifvItSCN-----------------------------~T~dELv~~f~ 194 (227)
T KOG1271|consen 147 DAISLSPDGPVGRLVVYLDSVEKLLSP---GGIFVITSCN-----------------------------FTKDELVEEFE 194 (227)
T ss_pred eeeecCCCCcccceeeehhhHhhccCC---CcEEEEEecC-----------------------------ccHHHHHHHHh
Confidence 332 222334578999999999 8888885532 36778888888
Q ss_pred HcCCceeEEEEeCC
Q 018205 337 DAGFSHFKITPVYG 350 (359)
Q Consensus 337 ~aGf~~~~~~~~~~ 350 (359)
.-||......+.+.
T Consensus 195 ~~~f~~~~tvp~pt 208 (227)
T KOG1271|consen 195 NFNFEYLSTVPTPT 208 (227)
T ss_pred cCCeEEEEeeccce
Confidence 88898877776653
No 98
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.95 E-value=8.5e-09 Score=100.42 Aligned_cols=131 Identities=18% Similarity=0.348 Sum_probs=93.6
Q ss_pred CCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCCCCC--CccEEEEcc----
Q 018205 195 LGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQSIP--PADAFFFKA---- 260 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~~~p--~~D~i~~~~---- 260 (359)
..+|||+|||+|.++..++..+|+.+++++|+++ +++.|+. .++++++.+|+++..+ .||+|+++-
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi~ 218 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYIS 218 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCCC
Confidence 4689999999999999999999999999999965 8877762 3579999999876554 499999841
Q ss_pred ----------hhccCC------c----hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhh
Q 018205 261 ----------IFHAFV------D----EDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVA 320 (359)
Q Consensus 261 ----------vl~~~~------~----~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (359)
+..+.+ . +....+++++.++|+| ||.+++ +... +
T Consensus 219 ~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~---gG~l~l-Eig~-~--------------------- 272 (506)
T PRK01544 219 HSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKP---NGKIIL-EIGF-K--------------------- 272 (506)
T ss_pred chhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccC---CCEEEE-EECC-c---------------------
Confidence 111111 0 1235678899999999 887765 3211 1
Q ss_pred cCCcccCHHHHHHHHHHcCCceeEEEEe-CCceeEEEE
Q 018205 321 VRGSERTEKEWEKLFLDAGFSHFKITPV-YGIKSLIEV 357 (359)
Q Consensus 321 ~~g~~~t~~~~~~ll~~aGf~~~~~~~~-~~~~~vi~~ 357 (359)
..+.+.+++.+.||..+++... .+...++.+
T Consensus 273 ------q~~~v~~~~~~~g~~~~~~~~D~~g~~R~v~~ 304 (506)
T PRK01544 273 ------QEEAVTQIFLDHGYNIESVYKDLQGHSRVILI 304 (506)
T ss_pred ------hHHHHHHHHHhcCCCceEEEecCCCCceEEEe
Confidence 2345778888899987776654 555555544
No 99
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.95 E-value=8.7e-09 Score=88.33 Aligned_cols=98 Identities=21% Similarity=0.283 Sum_probs=74.7
Q ss_pred HHhcccccCCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeecc-cccccCCC-------CCCceEeeCCCCCC---C-C
Q 018205 185 VKDCQPIFQGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDLP-HVVPKVPD-------TDNLKFIAGDMFQS---I-P 251 (359)
Q Consensus 185 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~-~~~~~a~~-------~~~v~~~~~d~~~~---~-p 251 (359)
+..+. ..+..+|||+|||+|.++..+++.. +..+++++|++ .+++.+++ .+++.++.+|+.+. . +
T Consensus 33 l~~l~--~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~ 110 (198)
T PRK00377 33 LSKLR--LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINE 110 (198)
T ss_pred HHHcC--CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCC
Confidence 34455 5677899999999999999988764 56799999994 48776651 35789999998542 2 3
Q ss_pred CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEE
Q 018205 252 PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 252 ~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli 292 (359)
.||.|++... ..+...+++.+.+.|+| ||.+++
T Consensus 111 ~~D~V~~~~~-----~~~~~~~l~~~~~~Lkp---gG~lv~ 143 (198)
T PRK00377 111 KFDRIFIGGG-----SEKLKEIISASWEIIKK---GGRIVI 143 (198)
T ss_pred CCCEEEECCC-----cccHHHHHHHHHHHcCC---CcEEEE
Confidence 5999998542 23446799999999999 888876
No 100
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.95 E-value=1.7e-08 Score=84.58 Aligned_cols=158 Identities=15% Similarity=0.203 Sum_probs=94.8
Q ss_pred hhhcccCccHHHHHHHHHhh-cccch----HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccc
Q 018205 157 WDYMAKNPDFNSIYNQAMAS-DSQLA----NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVP 231 (359)
Q Consensus 157 ~~~~~~~~~~~~~~~~~m~~-~~~~~----~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~ 231 (359)
++.+.++|+....|++..+. ...|. +.+++.+. ..++...|.|+|||.+.++..+.. ..+|..+|+-..
T Consensus 31 ~~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~-~~~~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva~-- 104 (219)
T PF05148_consen 31 LKLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLK-KRPKSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVAP-- 104 (219)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHC-TS-TTS-EEEES-TT-HHHHH--S------EEEEESS-S--
T ss_pred HHHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHH-hcCCCEEEEECCCchHHHHHhccc---CceEEEeeccCC--
Confidence 44455677766666655443 22232 55666665 234567999999999999876532 357999998331
Q ss_pred cCCCCCCceEeeCCCCC-CCC--CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHH
Q 018205 232 KVPDTDNLKFIAGDMFQ-SIP--PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTE 308 (359)
Q Consensus 232 ~a~~~~~v~~~~~d~~~-~~p--~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~ 308 (359)
.+ .+.+.|+.. |++ .+|+++++..|..- ....+|++++|+|+| ||.+.|+|....
T Consensus 105 ----n~--~Vtacdia~vPL~~~svDv~VfcLSLMGT---n~~~fi~EA~RvLK~---~G~L~IAEV~SR---------- 162 (219)
T PF05148_consen 105 ----NP--RVTACDIANVPLEDESVDVAVFCLSLMGT---NWPDFIREANRVLKP---GGILKIAEVKSR---------- 162 (219)
T ss_dssp ----ST--TEEES-TTS-S--TT-EEEEEEES---SS----HHHHHHHHHHHEEE---EEEEEEEEEGGG----------
T ss_pred ----CC--CEEEecCccCcCCCCceeEEEEEhhhhCC---CcHHHHHHHHheecc---CcEEEEEEeccc----------
Confidence 12 466688843 444 39999998888543 346799999999999 999999985431
Q ss_pred HHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCceeEEEEeCCceeEEEEe
Q 018205 309 AKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPVYGIKSLIEVY 358 (359)
Q Consensus 309 ~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~~~~~~~~~~vi~~~ 358 (359)
.-+.+++.+.++..||+..........+.+++.+
T Consensus 163 ----------------f~~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~ 196 (219)
T PF05148_consen 163 ----------------FENVKQFIKALKKLGFKLKSKDESNKHFVLFEFK 196 (219)
T ss_dssp -----------------S-HHHHHHHHHCTTEEEEEEE--STTEEEEEEE
T ss_pred ----------------CcCHHHHHHHHHHCCCeEEecccCCCeEEEEEEE
Confidence 1145778899999999988876555556666543
No 101
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.94 E-value=6.3e-09 Score=89.89 Aligned_cols=100 Identities=13% Similarity=0.166 Sum_probs=84.7
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC------------------CCCCceEeeCCCCCCC---
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP------------------DTDNLKFIAGDMFQSI--- 250 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~------------------~~~~v~~~~~d~~~~~--- 250 (359)
.+..+||+.|||.|.-+..|+++ +.+|+|+|+++ .++.+. ...++++.++|+|+--
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 35689999999999999999998 77899999966 666531 2458999999998731
Q ss_pred ---CCccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 018205 251 ---PPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVI 297 (359)
Q Consensus 251 ---p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~ 297 (359)
..||+|+=..+|+.++.+...+..+++.++|+| ||.++++....
T Consensus 120 ~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~p---gg~llll~~~~ 166 (226)
T PRK13256 120 NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSN---NTQILLLVMEH 166 (226)
T ss_pred cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCC---CcEEEEEEEec
Confidence 249999999999999999999999999999999 89998887644
No 102
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.93 E-value=5e-09 Score=90.70 Aligned_cols=100 Identities=19% Similarity=0.265 Sum_probs=75.5
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeecc-cccccCCC------CCCceEeeCCCCCCC---
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDLP-HVVPKVPD------TDNLKFIAGDMFQSI--- 250 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~-~~~~~a~~------~~~v~~~~~d~~~~~--- 250 (359)
..+++.+. +.+..+|||||||+|.++..+++.. ++.+++++|+. ++++.+++ ..+++++.+|.....
T Consensus 66 ~~~~~~l~--~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~ 143 (212)
T PRK13942 66 AIMCELLD--LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEEN 143 (212)
T ss_pred HHHHHHcC--CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcC
Confidence 34555555 5677899999999999999988875 45699999995 48877662 357999999986532
Q ss_pred CCccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 251 PPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 251 p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
..||+|++....+.. .+.+.+.|+| ||++++..
T Consensus 144 ~~fD~I~~~~~~~~~--------~~~l~~~Lkp---gG~lvi~~ 176 (212)
T PRK13942 144 APYDRIYVTAAGPDI--------PKPLIEQLKD---GGIMVIPV 176 (212)
T ss_pred CCcCEEEECCCcccc--------hHHHHHhhCC---CcEEEEEE
Confidence 249999998766543 3456678999 89888843
No 103
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.93 E-value=1.2e-08 Score=86.67 Aligned_cols=103 Identities=16% Similarity=0.298 Sum_probs=74.1
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeecccccccCCCCCCceEeeCCCCCC---------CC-
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDLPHVVPKVPDTDNLKFIAGDMFQS---------IP- 251 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~---------~p- 251 (359)
.+.+++. ...+..+|||+|||+|.++..+++++ +..+++++|++++. ...+++++.+|+.+. .+
T Consensus 22 ~~~~~~~-~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~~~~~~~l~~~~~~ 96 (188)
T TIGR00438 22 QLNQKFK-LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTDEEVLNKIRERVGD 96 (188)
T ss_pred HHHHHhc-ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCChhHHHHHHHHhCC
Confidence 3444444 24567899999999999999998887 56789999997643 235688898898542 22
Q ss_pred -CccEEEEcchhcc---CC------chHHHHHHHHHHHhcccCCCCcEEEEE
Q 018205 252 -PADAFFFKAIFHA---FV------DEDCLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 252 -~~D~i~~~~vl~~---~~------~~~~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
.+|+|++....|. |. .+....+|+.++++|+| ||.+++.
T Consensus 97 ~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lvi~ 145 (188)
T TIGR00438 97 DKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKP---KGNFVVK 145 (188)
T ss_pred CCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccC---CCEEEEE
Confidence 4999998543221 11 12235789999999999 8988875
No 104
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.93 E-value=5.7e-09 Score=96.79 Aligned_cols=108 Identities=13% Similarity=0.148 Sum_probs=80.7
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC------CCCCceEeeCCCCC---CCC-
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP------DTDNLKFIAGDMFQ---SIP- 251 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~------~~~~v~~~~~d~~~---~~p- 251 (359)
.+++.+. ......+||||||+|.++..+++++|+..++|+|+.. +++.+. ...++.++.+|+.. .++
T Consensus 113 ~~~~~~~--~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~ 190 (390)
T PRK14121 113 NFLDFIS--KNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPS 190 (390)
T ss_pred HHHHHhc--CCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCC
Confidence 4555554 3345699999999999999999999999999999954 666554 24579999999832 344
Q ss_pred -CccEEEEcchhccCCchH-----HHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 252 -PADAFFFKAIFHAFVDED-----CLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 252 -~~D~i~~~~vl~~~~~~~-----~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
.+|.|+++... .|+... ...+|+.+.++|+| ||.+.+.+-.
T Consensus 191 ~s~D~I~lnFPd-PW~KkrHRRlv~~~fL~e~~RvLkp---GG~l~l~TD~ 237 (390)
T PRK14121 191 NSVEKIFVHFPV-PWDKKPHRRVISEDFLNEALRVLKP---GGTLELRTDS 237 (390)
T ss_pred CceeEEEEeCCC-CccccchhhccHHHHHHHHHHHcCC---CcEEEEEEEC
Confidence 49999876433 233221 14689999999999 9999886644
No 105
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.93 E-value=5e-09 Score=90.62 Aligned_cols=133 Identities=17% Similarity=0.232 Sum_probs=97.1
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC------------------CCCCceEeeCCCCCCC--
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP------------------DTDNLKFIAGDMFQSI-- 250 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~------------------~~~~v~~~~~d~~~~~-- 250 (359)
.....+||..|||.|.-+..|+++ +.+|+|+|+++ .++.+. ...+|++.++|+|+--
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 455679999999999999999998 67999999966 666541 1457899999998721
Q ss_pred --CCccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCH
Q 018205 251 --PPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTE 328 (359)
Q Consensus 251 --p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~ 328 (359)
..||+|+=...|+-++.+...+..+++.++|+| ||.++++....+..... +.-...+.
T Consensus 113 ~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p---~g~~lLi~l~~~~~~~~-----------------GPPf~v~~ 172 (218)
T PF05724_consen 113 DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKP---GGRGLLITLEYPQGEME-----------------GPPFSVTE 172 (218)
T ss_dssp CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEE---EEEEEEEEEES-CSCSS-----------------SSS----H
T ss_pred hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCC---CCcEEEEEEEcCCcCCC-----------------CcCCCCCH
Confidence 249999999999999999999999999999999 89966655544322110 00112378
Q ss_pred HHHHHHHHHcCCceeEEEE
Q 018205 329 KEWEKLFLDAGFSHFKITP 347 (359)
Q Consensus 329 ~~~~~ll~~aGf~~~~~~~ 347 (359)
+++.++|. .+|++.....
T Consensus 173 ~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 173 EEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp HHHHHHHT-TTEEEEEEEE
T ss_pred HHHHHHhc-CCcEEEEEec
Confidence 89999998 7888766654
No 106
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.92 E-value=2.9e-09 Score=97.20 Aligned_cols=94 Identities=18% Similarity=0.367 Sum_probs=73.4
Q ss_pred CeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCCCCC--CccEEEEcc-----
Q 018205 196 GSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQSIP--PADAFFFKA----- 260 (359)
Q Consensus 196 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~~~p--~~D~i~~~~----- 260 (359)
.+|||+|||+|.++..+++.+|+.+++++|++. +++.|+. .++++++.+|+++..+ .||+|+++-
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~ 214 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVDA 214 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCCc
Confidence 689999999999999999999999999999954 8887762 3579999999876554 499999861
Q ss_pred --------hhccCCc----------hHHHHHHHHHHHhcccCCCCcEEEE
Q 018205 261 --------IFHAFVD----------EDCLKILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 261 --------vl~~~~~----------~~~~~~L~~~~~~L~p~~~gG~lli 292 (359)
.+++.+. +....+++++.+.|+| ||.+++
T Consensus 215 ~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~p---gG~l~~ 261 (307)
T PRK11805 215 EDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTE---DGVLVV 261 (307)
T ss_pred cchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCC---CCEEEE
Confidence 1111111 2246789999999999 787765
No 107
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.92 E-value=5e-09 Score=95.05 Aligned_cols=93 Identities=19% Similarity=0.221 Sum_probs=68.6
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCCCCC-CccEEEEcchhcc
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQSIP-PADAFFFKAIFHA 264 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~~~p-~~D~i~~~~vl~~ 264 (359)
+..+|||+|||+|.++..+++. +..+++++|++. +++.|++ ..++.+...+.....+ .||+|+++...
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~-- 235 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILA-- 235 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCH--
Confidence 4689999999999999887764 345899999954 8877662 2356666665422222 59999986543
Q ss_pred CCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 018205 265 FVDEDCLKILKRCREAIASRGDRGKVIIIDI 295 (359)
Q Consensus 265 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~ 295 (359)
+....++++++++|+| ||.+++...
T Consensus 236 ---~~l~~ll~~~~~~Lkp---gG~li~sgi 260 (288)
T TIGR00406 236 ---EVIKELYPQFSRLVKP---GGWLILSGI 260 (288)
T ss_pred ---HHHHHHHHHHHHHcCC---CcEEEEEeC
Confidence 2345799999999999 898887653
No 108
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.91 E-value=2.2e-09 Score=91.09 Aligned_cols=97 Identities=16% Similarity=0.286 Sum_probs=70.2
Q ss_pred CCCeEEEeCCCcch----HHHHHHHHC----C-CCeEEEeeccc-ccccCCC----------------------------
Q 018205 194 GLGSLVDVGGGTGS----FARIISEAF----P-GIKCTVLDLPH-VVPKVPD---------------------------- 235 (359)
Q Consensus 194 ~~~~vlDvG~G~G~----~~~~l~~~~----p-~~~~~~~D~~~-~~~~a~~---------------------------- 235 (359)
+..+|+-.||++|. +++.+.+.. + +.++++.|++. +++.|+.
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 56899999999996 455555522 2 46899999965 8887761
Q ss_pred ------CCCceEeeCCCCCCCC---CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 018205 236 ------TDNLKFIAGDMFQSIP---PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 236 ------~~~v~~~~~d~~~~~p---~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
..+|+|...|..+..| .||+|+|.|||-+++++...++++++++.|+| ||.|++-
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~p---gG~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKP---GGYLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEE---EEEEEE-
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCC---CCEEEEe
Confidence 3589999999977222 49999999999999999999999999999999 8888773
No 109
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.90 E-value=7.9e-09 Score=89.79 Aligned_cols=98 Identities=17% Similarity=0.241 Sum_probs=74.5
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCC-CCeEEEeecc-cccccCCC------CCCceEeeCCCCCCC---C
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFP-GIKCTVLDLP-HVVPKVPD------TDNLKFIAGDMFQSI---P 251 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~-~~~~~a~~------~~~v~~~~~d~~~~~---p 251 (359)
.+++.+. ..+..+|||||||+|.++..+++..+ +.+++++|++ ++++.|++ .++++++.+|..+.. .
T Consensus 68 ~~~~~l~--~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~ 145 (215)
T TIGR00080 68 MMTELLE--LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLA 145 (215)
T ss_pred HHHHHhC--CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccC
Confidence 4455555 56778999999999999999999864 4679999994 58877762 357999999986532 2
Q ss_pred CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 018205 252 PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 252 ~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
.||+|++.....+ +.+.+.+.|+| ||++++.
T Consensus 146 ~fD~Ii~~~~~~~--------~~~~~~~~L~~---gG~lv~~ 176 (215)
T TIGR00080 146 PYDRIYVTAAGPK--------IPEALIDQLKE---GGILVMP 176 (215)
T ss_pred CCCEEEEcCCccc--------ccHHHHHhcCc---CcEEEEE
Confidence 4999998765543 34557788999 8988874
No 110
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.90 E-value=6.4e-09 Score=89.03 Aligned_cols=101 Identities=17% Similarity=0.307 Sum_probs=75.9
Q ss_pred HHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCCC------CCCceEeeCCCCC---CC-CC
Q 018205 184 IVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVPD------TDNLKFIAGDMFQ---SI-PP 252 (359)
Q Consensus 184 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~---~~-p~ 252 (359)
+++.+. ..+..+|||+|||+|.++..+++..|+.+++++|+ +.+++.+++ ..+++++.+|+.+ .. +.
T Consensus 32 l~~~l~--~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~ 109 (196)
T PRK07402 32 LISQLR--LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPA 109 (196)
T ss_pred HHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCC
Confidence 455555 45678999999999999999998888899999999 458776652 3578999998854 22 24
Q ss_pred ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 018205 253 ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDI 295 (359)
Q Consensus 253 ~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~ 295 (359)
+|.+++.. ......+++++.+.|+| ||.+++...
T Consensus 110 ~d~v~~~~------~~~~~~~l~~~~~~Lkp---gG~li~~~~ 143 (196)
T PRK07402 110 PDRVCIEG------GRPIKEILQAVWQYLKP---GGRLVATAS 143 (196)
T ss_pred CCEEEEEC------CcCHHHHHHHHHHhcCC---CeEEEEEee
Confidence 67765421 12346799999999999 898888764
No 111
>PRK14967 putative methyltransferase; Provisional
Probab=98.90 E-value=2.9e-08 Score=86.77 Aligned_cols=102 Identities=14% Similarity=0.177 Sum_probs=73.3
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----CCCceEeeCCCCCCCC--CccEEEEcchhc
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----TDNLKFIAGDMFQSIP--PADAFFFKAIFH 263 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----~~~v~~~~~d~~~~~p--~~D~i~~~~vl~ 263 (359)
..+..+|||+|||+|.++..+++.. ..+++++|++. +++.++. ..+++++.+|+.+.++ .||+|+++--.+
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAG-AGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPYV 112 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCCC
Confidence 4456899999999999999988763 34899999954 7765552 2357888999865443 499999863222
Q ss_pred cCCc-------------------hHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 018205 264 AFVD-------------------EDCLKILKRCREAIASRGDRGKVIIIDIVI 297 (359)
Q Consensus 264 ~~~~-------------------~~~~~~L~~~~~~L~p~~~gG~lli~~~~~ 297 (359)
.-+. .....+++++.++|+| ||.++++....
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~---gG~l~~~~~~~ 162 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAP---GGSLLLVQSEL 162 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCC---CcEEEEEEecc
Confidence 1110 1135688999999999 89988865444
No 112
>PRK04457 spermidine synthase; Provisional
Probab=98.89 E-value=3.4e-09 Score=94.63 Aligned_cols=97 Identities=21% Similarity=0.435 Sum_probs=75.0
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCCC-------CCCceEeeCCCCC---CCC-CccEEEEcc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVPD-------TDNLKFIAGDMFQ---SIP-PADAFFFKA 260 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~---~~p-~~D~i~~~~ 260 (359)
+++.+|||||||+|.++..+++.+|+.+++++|+ +++++.|++ .++++++.+|..+ ..+ .||+|++..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 3568999999999999999999999999999999 568887662 4789999999843 233 599999752
Q ss_pred hhcc--CCch-HHHHHHHHHHHhcccCCCCcEEEEE
Q 018205 261 IFHA--FVDE-DCLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 261 vl~~--~~~~-~~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
++. .+.. ....+++++++.|+| ||.+++.
T Consensus 145 -~~~~~~~~~l~t~efl~~~~~~L~p---gGvlvin 176 (262)
T PRK04457 145 -FDGEGIIDALCTQPFFDDCRNALSS---DGIFVVN 176 (262)
T ss_pred -CCCCCCccccCcHHHHHHHHHhcCC---CcEEEEE
Confidence 221 1111 125799999999999 8887774
No 113
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.89 E-value=3.6e-08 Score=84.43 Aligned_cols=157 Identities=18% Similarity=0.231 Sum_probs=107.0
Q ss_pred hhhhcccCccHHHHHHHHHhhc-ccch----HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccccc
Q 018205 156 FWDYMAKNPDFNSIYNQAMASD-SQLA----NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVV 230 (359)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~m~~~-~~~~----~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~ 230 (359)
-++.+..+|+....|++..+.- ..|. +.+++.+. ..++...|.|+|||-+.++... .-+|..+|+-.+
T Consensus 138 A~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik-~r~~~~vIaD~GCGEakiA~~~-----~~kV~SfDL~a~- 210 (325)
T KOG3045|consen 138 AFDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIK-RRPKNIVIADFGCGEAKIASSE-----RHKVHSFDLVAV- 210 (325)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHH-hCcCceEEEecccchhhhhhcc-----ccceeeeeeecC-
Confidence 4455567777777776654432 2232 55666665 2356789999999999887621 236888887432
Q ss_pred ccCCCCCCceEeeCCCCC-CCC--CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHH
Q 018205 231 PKVPDTDNLKFIAGDMFQ-SIP--PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLT 307 (359)
Q Consensus 231 ~~a~~~~~v~~~~~d~~~-~~p--~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~ 307 (359)
+-.++..|+.. +.+ .+|+++++..|.- .....++++++++|++ ||.++|.|....
T Consensus 211 -------~~~V~~cDm~~vPl~d~svDvaV~CLSLMg---tn~~df~kEa~RiLk~---gG~l~IAEv~SR--------- 268 (325)
T KOG3045|consen 211 -------NERVIACDMRNVPLEDESVDVAVFCLSLMG---TNLADFIKEANRILKP---GGLLYIAEVKSR--------- 268 (325)
T ss_pred -------CCceeeccccCCcCccCcccEEEeeHhhhc---ccHHHHHHHHHHHhcc---CceEEEEehhhh---------
Confidence 33566778854 443 4999998877753 2345699999999999 999999884321
Q ss_pred HHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCceeEEEEeCCceeEEEEe
Q 018205 308 EAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPVYGIKSLIEVY 358 (359)
Q Consensus 308 ~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~~~~~~~~~~vi~~~ 358 (359)
.-+...+.+.|...||...+.......+.+++.+
T Consensus 269 -----------------f~dv~~f~r~l~~lGF~~~~~d~~n~~F~lfefk 302 (325)
T KOG3045|consen 269 -----------------FSDVKGFVRALTKLGFDVKHKDVSNKYFTLFEFK 302 (325)
T ss_pred -----------------cccHHHHHHHHHHcCCeeeehhhhcceEEEEEEe
Confidence 1134558888999999988877766666666654
No 114
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.87 E-value=2e-08 Score=89.55 Aligned_cols=127 Identities=14% Similarity=0.215 Sum_probs=89.4
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC---CCCce----EeeCCCCC-CC-CCccEEEEcchh
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD---TDNLK----FIAGDMFQ-SI-PPADAFFFKAIF 262 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~---~~~v~----~~~~d~~~-~~-p~~D~i~~~~vl 262 (359)
.++.+|||+|||+|-+++..++.. ..+++++|+. ..++.|++ .+++. ....+..+ .. ..||+|+++=.-
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kLG-A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANILA 239 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKLG-AKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANILA 239 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHcC-CceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhhH
Confidence 578999999999999999988763 3479999994 47777773 33443 22222222 12 249999986432
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCce
Q 018205 263 HAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSH 342 (359)
Q Consensus 263 ~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~ 342 (359)
+-..++...+++.++| ||.+++.-... + ..+...+.+.++||.+
T Consensus 240 -----~vl~~La~~~~~~lkp---gg~lIlSGIl~-~---------------------------q~~~V~~a~~~~gf~v 283 (300)
T COG2264 240 -----EVLVELAPDIKRLLKP---GGRLILSGILE-D---------------------------QAESVAEAYEQAGFEV 283 (300)
T ss_pred -----HHHHHHHHHHHHHcCC---CceEEEEeehH-h---------------------------HHHHHHHHHHhCCCeE
Confidence 2346799999999999 78777754221 1 1355778889999999
Q ss_pred eEEEEeCCceeEEE
Q 018205 343 FKITPVYGIKSLIE 356 (359)
Q Consensus 343 ~~~~~~~~~~~vi~ 356 (359)
+++.....+.++..
T Consensus 284 ~~~~~~~eW~~i~~ 297 (300)
T COG2264 284 VEVLEREEWVAIVG 297 (300)
T ss_pred eEEEecCCEEEEEE
Confidence 99998877766554
No 115
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.86 E-value=1e-08 Score=88.77 Aligned_cols=144 Identities=17% Similarity=0.214 Sum_probs=95.0
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCCCCCceEeeCCCCCCCC-CccEEEEcchhccCCchHHH
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPDTDNLKFIAGDMFQSIP-PADAFFFKAIFHAFVDEDCL 271 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~~v~~~~~d~~~~~p-~~D~i~~~~vl~~~~~~~~~ 271 (359)
...++||||+|.|..+..++..+.+ +++.|.+. |....+ ..+++++..+-+..-+ .||+|.|.|+|....++ .
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~--v~aTE~S~~Mr~rL~-~kg~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P--~ 168 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKE--VYATEASPPMRWRLS-KKGFTVLDIDDWQQTDFKFDVISCLNVLDRCDRP--L 168 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcce--EEeecCCHHHHHHHH-hCCCeEEehhhhhccCCceEEEeehhhhhccCCH--H
Confidence 4578999999999999999998765 88889876 544433 3456666554444323 59999999999988766 5
Q ss_pred HHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHH--hhhhhhhhhcCCc--ccCHHHHHHHHHHcCCceeEEEE
Q 018205 272 KILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKL--LYDMLMMVAVRGS--ERTEKEWEKLFLDAGFSHFKITP 347 (359)
Q Consensus 272 ~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~--~~t~~~~~~ll~~aGf~~~~~~~ 347 (359)
.+|+.++++|+| +|.++++-...-.. |.+... ...........|. +-..+.+.+.|+.+||+++....
T Consensus 169 ~LL~~i~~~l~p---~G~lilAvVlP~~p-----yVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~~tr 240 (265)
T PF05219_consen 169 TLLRDIRRALKP---NGRLILAVVLPFRP-----YVEFGGGKSNRPSELLPVKGATFEEQVSSLVNVFEPAGFEVERWTR 240 (265)
T ss_pred HHHHHHHHHhCC---CCEEEEEEEecccc-----cEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCEEEEEec
Confidence 699999999999 78887765432111 000000 0000000011122 12344455899999999999988
Q ss_pred eCC
Q 018205 348 VYG 350 (359)
Q Consensus 348 ~~~ 350 (359)
.|.
T Consensus 241 ~PY 243 (265)
T PF05219_consen 241 LPY 243 (265)
T ss_pred cCc
Confidence 864
No 116
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.84 E-value=1.2e-08 Score=76.80 Aligned_cols=92 Identities=23% Similarity=0.391 Sum_probs=73.8
Q ss_pred eEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC------CCCCceEeeCCCCCCC----CCccEEEEcchhccC
Q 018205 197 SLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP------DTDNLKFIAGDMFQSI----PPADAFFFKAIFHAF 265 (359)
Q Consensus 197 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~------~~~~v~~~~~d~~~~~----p~~D~i~~~~vl~~~ 265 (359)
+|+|+|||.|..+..+++ .+..+++++|++. .+..++ ...++++...|+.+.. +.+|+|++..+++++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 589999999999999988 6678999999954 554433 3567899999986532 359999999999874
Q ss_pred CchHHHHHHHHHHHhcccCCCCcEEEEE
Q 018205 266 VDEDCLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 266 ~~~~~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
.+....+++.+.+.|+| +|.+++.
T Consensus 80 -~~~~~~~l~~~~~~l~~---~g~~~~~ 103 (107)
T cd02440 80 -VEDLARFLEEARRLLKP---GGVLVLT 103 (107)
T ss_pred -hhHHHHHHHHHHHHcCC---CCEEEEE
Confidence 35567799999999999 8888764
No 117
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.84 E-value=2.6e-08 Score=89.64 Aligned_cols=126 Identities=18% Similarity=0.203 Sum_probs=86.0
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCCC-------CCCceEee-CCCCCCCCCccEEEEcchhc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVPD-------TDNLKFIA-GDMFQSIPPADAFFFKAIFH 263 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~-~d~~~~~p~~D~i~~~~vl~ 263 (359)
.+..+|||||||+|-+++..++.. ..+++++|+ |..++.|++ .+++.+.. .|. ....||+|+++-..
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~klG-A~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~~--~~~~~dlvvANI~~- 235 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKLG-AKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSEDL--VEGKFDLVVANILA- 235 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHTT-BSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSCT--CCS-EEEEEEES-H-
T ss_pred cCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEeccc--ccccCCEEEECCCH-
Confidence 456899999999999999888763 337999999 447777662 34554431 111 12359999975443
Q ss_pred cCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCcee
Q 018205 264 AFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHF 343 (359)
Q Consensus 264 ~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~ 343 (359)
+....++..+.++|+| ||.+++.-... + ..+++.+.+++ ||.+.
T Consensus 236 ----~vL~~l~~~~~~~l~~---~G~lIlSGIl~-~---------------------------~~~~v~~a~~~-g~~~~ 279 (295)
T PF06325_consen 236 ----DVLLELAPDIASLLKP---GGYLILSGILE-E---------------------------QEDEVIEAYKQ-GFELV 279 (295)
T ss_dssp ----HHHHHHHHHCHHHEEE---EEEEEEEEEEG-G---------------------------GHHHHHHHHHT-TEEEE
T ss_pred ----HHHHHHHHHHHHhhCC---CCEEEEccccH-H---------------------------HHHHHHHHHHC-CCEEE
Confidence 4456789999999999 77777644332 2 13456677776 99999
Q ss_pred EEEEeCCceeEEEEe
Q 018205 344 KITPVYGIKSLIEVY 358 (359)
Q Consensus 344 ~~~~~~~~~~vi~~~ 358 (359)
+......+.++..-+
T Consensus 280 ~~~~~~~W~~l~~~K 294 (295)
T PF06325_consen 280 EEREEGEWVALVFKK 294 (295)
T ss_dssp EEEEETTEEEEEEEE
T ss_pred EEEEECCEEEEEEEe
Confidence 999888877765443
No 118
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.83 E-value=4.2e-08 Score=87.07 Aligned_cols=123 Identities=17% Similarity=0.239 Sum_probs=86.1
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC---CCCceEeeCCCCCCCC-----CccEEEEcchh--
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD---TDNLKFIAGDMFQSIP-----PADAFFFKAIF-- 262 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~---~~~v~~~~~d~~~~~p-----~~D~i~~~~vl-- 262 (359)
+..+|||+|||+|.++..+++..|+.+++++|++ .+++.|++ ..+++++.+|+++..+ .||+|+++--.
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVP 165 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence 3468999999999999999999999999999995 48887763 2346889999865432 49999976311
Q ss_pred ----ccCCch------------------HHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhh
Q 018205 263 ----HAFVDE------------------DCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVA 320 (359)
Q Consensus 263 ----~~~~~~------------------~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (359)
...+++ -...+++.+.++|+| ||.+++.. . .+
T Consensus 166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~---gG~l~l~~-~-~~--------------------- 219 (251)
T TIGR03704 166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAP---GGHLLVET-S-ER--------------------- 219 (251)
T ss_pred chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCC---CCEEEEEE-C-cc---------------------
Confidence 111111 134788888999999 88877642 1 11
Q ss_pred cCCcccCHHHHHHHHHHcCCceeEEEEe
Q 018205 321 VRGSERTEKEWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 321 ~~g~~~t~~~~~~ll~~aGf~~~~~~~~ 348 (359)
...++.++|++.||+..-..+-
T Consensus 220 ------~~~~v~~~l~~~g~~~~~~~~~ 241 (251)
T TIGR03704 220 ------QAPLAVEAFARAGLIARVASSE 241 (251)
T ss_pred ------hHHHHHHHHHHCCCCceeeEcc
Confidence 1234667788888886555444
No 119
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.82 E-value=7.6e-09 Score=87.87 Aligned_cols=96 Identities=18% Similarity=0.220 Sum_probs=72.6
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCCCCCceEeeCCC--CC----C-C--C-CccEEEEcchh
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPDTDNLKFIAGDM--FQ----S-I--P-PADAFFFKAIF 262 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~~v~~~~~d~--~~----~-~--p-~~D~i~~~~vl 262 (359)
....++|||||+|..++.++..+.. ++++|+++ |++.|++..+++....-. -+ + . + ++|+|++...+
T Consensus 33 ~h~~a~DvG~G~Gqa~~~iae~~k~--VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~ 110 (261)
T KOG3010|consen 33 GHRLAWDVGTGNGQAARGIAEHYKE--VIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAV 110 (261)
T ss_pred CcceEEEeccCCCcchHHHHHhhhh--heeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhH
Confidence 4458999999999888998888654 99999965 999999877666655432 11 1 1 1 49999999999
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 263 HAFVDEDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 263 ~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
|.+.. .++.+.++++|++ +||.+.+-...
T Consensus 111 HWFdl---e~fy~~~~rvLRk--~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 111 HWFDL---ERFYKEAYRVLRK--DGGLIAVWNYN 139 (261)
T ss_pred Hhhch---HHHHHHHHHHcCC--CCCEEEEEEcc
Confidence 98854 4599999999998 25555554444
No 120
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.81 E-value=8.3e-09 Score=80.46 Aligned_cols=96 Identities=19% Similarity=0.282 Sum_probs=73.4
Q ss_pred CeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCC-------CCCCceEeeCCCCC---CCC--CccEEEEcchh
Q 018205 196 GSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVP-------DTDNLKFIAGDMFQ---SIP--PADAFFFKAIF 262 (359)
Q Consensus 196 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-------~~~~v~~~~~d~~~---~~p--~~D~i~~~~vl 262 (359)
.+|||+|||+|.++..+++.. ..+++++|+ +..++.++ ..++++++.+|+++ ..+ .||+|+++--+
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 589999999999999999998 789999999 44766665 14689999999955 233 59999997666
Q ss_pred ccCC------chHHHHHHHHHHHhcccCCCCcEEEEEee
Q 018205 263 HAFV------DEDCLKILKRCREAIASRGDRGKVIIIDI 295 (359)
Q Consensus 263 ~~~~------~~~~~~~L~~~~~~L~p~~~gG~lli~~~ 295 (359)
.... .+....+++++.++|+| ||.++++-+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~---gG~~~~~~~ 116 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKP---GGVLVFITP 116 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCC---CeEEEEEeC
Confidence 5421 12346799999999999 888887643
No 121
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=7.6e-08 Score=86.59 Aligned_cols=129 Identities=18% Similarity=0.322 Sum_probs=90.3
Q ss_pred eEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC------CCCceEeeCCCCCCCC-CccEEEEc--chhcc--
Q 018205 197 SLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD------TDNLKFIAGDMFQSIP-PADAFFFK--AIFHA-- 264 (359)
Q Consensus 197 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~------~~~v~~~~~d~~~~~p-~~D~i~~~--~vl~~-- 264 (359)
+|||+|||+|..+..+++..|+++++++|++ ..++.|+. ..++.++.+|.+++.+ .||+|+++ ++=..
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~~ 192 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAEDP 192 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCccc
Confidence 8999999999999999999999999999995 48877762 2566777779888766 59999976 11110
Q ss_pred -C----------------C--chHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcc
Q 018205 265 -F----------------V--DEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSE 325 (359)
Q Consensus 265 -~----------------~--~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 325 (359)
. . -+-..+++..+.+.|+| ||.+++ +.-..
T Consensus 193 ~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~---~g~l~l-e~g~~--------------------------- 241 (280)
T COG2890 193 ELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKP---GGVLIL-EIGLT--------------------------- 241 (280)
T ss_pred ccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCC---CcEEEE-EECCC---------------------------
Confidence 0 0 12345788888889998 554444 42211
Q ss_pred cCHHHHHHHHHHcC-CceeEEEEe-CCceeEEEE
Q 018205 326 RTEKEWEKLFLDAG-FSHFKITPV-YGIKSLIEV 357 (359)
Q Consensus 326 ~t~~~~~~ll~~aG-f~~~~~~~~-~~~~~vi~~ 357 (359)
..+...++|.+.| |..+..... .+...++.+
T Consensus 242 -q~~~v~~~~~~~~~~~~v~~~~d~~g~~rv~~~ 274 (280)
T COG2890 242 -QGEAVKALFEDTGFFEIVETLKDLFGRDRVVLA 274 (280)
T ss_pred -cHHHHHHHHHhcCCceEEEEEecCCCceEEEEE
Confidence 2466889999999 665555554 455555544
No 122
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.78 E-value=2.8e-08 Score=87.98 Aligned_cols=98 Identities=18% Similarity=0.286 Sum_probs=81.7
Q ss_pred CCCeEEEeCCCcch----HHHHHHHHCC-----CCeEEEeeccc-ccccCCC----------------------------
Q 018205 194 GLGSLVDVGGGTGS----FARIISEAFP-----GIKCTVLDLPH-VVPKVPD---------------------------- 235 (359)
Q Consensus 194 ~~~~vlDvG~G~G~----~~~~l~~~~p-----~~~~~~~D~~~-~~~~a~~---------------------------- 235 (359)
+..+|+-.||++|. +++.+.+.+| .+++++.|++. +++.|+.
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 47899999999995 6777777776 47999999965 8887761
Q ss_pred -------CCCceEeeCCCCCC--CC-CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 236 -------TDNLKFIAGDMFQS--IP-PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 236 -------~~~v~~~~~d~~~~--~p-~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
...|.|...|..++ .+ .||+|+|.|||-++..+...+++++++..|+| ||.|++-.
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~---gG~LflG~ 241 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKP---GGLLFLGH 241 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCC---CCEEEEcc
Confidence 24788889998763 34 39999999999999999889999999999999 88888843
No 123
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.77 E-value=8e-08 Score=88.97 Aligned_cols=120 Identities=19% Similarity=0.124 Sum_probs=84.9
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCC-CCC--CccEEEEcch
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQ-SIP--PADAFFFKAI 261 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~-~~p--~~D~i~~~~v 261 (359)
+.+..+|||.|||+|.++...+.. +.+++++|++. +++.++. ...+.+..+|+.+ +.+ .||+|++.--
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPP 257 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPP 257 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCC
Confidence 456789999999999999887654 67899999954 8776552 2347899999965 332 4999998522
Q ss_pred hc-------cCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHH
Q 018205 262 FH-------AFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKL 334 (359)
Q Consensus 262 l~-------~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~l 334 (359)
.. +...+...++|+++.+.|+| ||++++..+.. .+|.++
T Consensus 258 yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~---gG~lv~~~~~~-------------------------------~~~~~~ 303 (329)
T TIGR01177 258 YGRSTTAAGDGLESLYERSLEEFHEVLKS---EGWIVYAVPTR-------------------------------IDLESL 303 (329)
T ss_pred CcCcccccCCchHHHHHHHHHHHHHHccC---CcEEEEEEcCC-------------------------------CCHHHH
Confidence 11 11112246799999999999 89888754211 125567
Q ss_pred HHHcCCceeEEEEe
Q 018205 335 FLDAGFSHFKITPV 348 (359)
Q Consensus 335 l~~aGf~~~~~~~~ 348 (359)
++++|| +......
T Consensus 304 ~~~~g~-i~~~~~~ 316 (329)
T TIGR01177 304 AEDAFR-VVKRFEV 316 (329)
T ss_pred HhhcCc-chheeee
Confidence 888999 7666654
No 124
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=98.74 E-value=5.4e-09 Score=67.53 Aligned_cols=49 Identities=47% Similarity=0.835 Sum_probs=42.8
Q ss_pred HHHHHHHhcCcchhcccCC-CCCCHHHHHHhcC-CCCCCcccHHHHHHHHH
Q 018205 30 TSLKCAVELDIPEVIHKHG-RPITLPQLVSALE-INPTKADGLFKLMRLLV 78 (359)
Q Consensus 30 ~~l~~a~~lglf~~L~~~~-~~~t~~ela~~~~-~~~~~~~~l~~~L~~L~ 78 (359)
++|++|++|||||.|.++| +++|+.||+.++. .+|.+...|.|+||+|+
T Consensus 1 MaLk~aveLgI~dii~~~g~~~ls~~eia~~l~~~~p~~~~~L~RimR~L~ 51 (51)
T PF08100_consen 1 MALKCAVELGIPDIIHNAGGGPLSLSEIAARLPTSNPSAPPMLDRIMRLLV 51 (51)
T ss_dssp HHHHHHHHTTHHHHHHHHTTS-BEHHHHHHTSTCT-TTHHHHHHHHHHHHH
T ss_pred CcHHHHHHcCcHHHHHHcCCCCCCHHHHHHHcCCCCcchHHHHHHHHHHhC
Confidence 5799999999999999976 7999999999999 77767789999999985
No 125
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.70 E-value=4.1e-08 Score=88.09 Aligned_cols=96 Identities=18% Similarity=0.251 Sum_probs=77.0
Q ss_pred CCeEEEeCCCcch----HHHHHHHHCC----CCeEEEeeccc-ccccCCC------------------------------
Q 018205 195 LGSLVDVGGGTGS----FARIISEAFP----GIKCTVLDLPH-VVPKVPD------------------------------ 235 (359)
Q Consensus 195 ~~~vlDvG~G~G~----~~~~l~~~~p----~~~~~~~D~~~-~~~~a~~------------------------------ 235 (359)
..+|+..||++|. +++.+.+..+ ++++++.|++. +++.|+.
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 4799999999996 5555555432 46899999965 8877651
Q ss_pred -------CCCceEeeCCCCC-CCC---CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 018205 236 -------TDNLKFIAGDMFQ-SIP---PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 236 -------~~~v~~~~~d~~~-~~p---~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
..+|+|...|..+ +.| .||+|+|.+++.|++++...+++++++++|+| ||.+++-
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~p---gG~L~lG 261 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKP---DGLLFAG 261 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCC---CcEEEEe
Confidence 1467888899876 333 49999999999999999899999999999999 8877663
No 126
>PRK00811 spermidine synthase; Provisional
Probab=98.70 E-value=2.7e-08 Score=89.88 Aligned_cols=97 Identities=16% Similarity=0.241 Sum_probs=72.3
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC-----------CCCceEeeCCCCCC----CCCccEE
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD-----------TDNLKFIAGDMFQS----IPPADAF 256 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~-----------~~~v~~~~~d~~~~----~p~~D~i 256 (359)
+++.+||+||||.|..+..+++..+..+++++|+. .+++.|++ .+|++++.+|..+- ...||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 45789999999999999999876555689999994 58877762 46899999998542 1249999
Q ss_pred EEcchhccCCchH--HHHHHHHHHHhcccCCCCcEEEE
Q 018205 257 FFKAIFHAFVDED--CLKILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 257 ~~~~vl~~~~~~~--~~~~L~~~~~~L~p~~~gG~lli 292 (359)
++...-...+... ...+++.+++.|+| ||.+++
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~---gGvlv~ 189 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKE---DGIFVA 189 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCC---CcEEEE
Confidence 9854332222211 25689999999999 787665
No 127
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.70 E-value=1e-07 Score=82.67 Aligned_cols=97 Identities=13% Similarity=0.199 Sum_probs=71.8
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC------CCCceEeeCCCCCCCC---C
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD------TDNLKFIAGDMFQSIP---P 252 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~------~~~v~~~~~d~~~~~p---~ 252 (359)
.++..+. ..+..+|||||||+|..+..+++.. .+++++|.+ .+++.+++ ..++++..+|..+..+ .
T Consensus 69 ~l~~~l~--~~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 144 (212)
T PRK00312 69 RMTELLE--LKPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAP 144 (212)
T ss_pred HHHHhcC--CCCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCC
Confidence 3344444 5567899999999999998887774 379999995 47766652 3468999999865433 4
Q ss_pred ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 253 ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 253 ~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
||+|++...++++ .+.+.+.|+| ||.+++.-
T Consensus 145 fD~I~~~~~~~~~--------~~~l~~~L~~---gG~lv~~~ 175 (212)
T PRK00312 145 FDRILVTAAAPEI--------PRALLEQLKE---GGILVAPV 175 (212)
T ss_pred cCEEEEccCchhh--------hHHHHHhcCC---CcEEEEEE
Confidence 9999998766544 3556789999 88888754
No 128
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.63 E-value=1.6e-07 Score=82.33 Aligned_cols=140 Identities=22% Similarity=0.383 Sum_probs=81.1
Q ss_pred CCCeEEEeCCCc---chHHHHHHHHCCCCeEEEeec-ccccccCC----CCCC--ceEeeCCCCCC-----CC---C-cc
Q 018205 194 GLGSLVDVGGGT---GSFARIISEAFPGIKCTVLDL-PHVVPKVP----DTDN--LKFIAGDMFQS-----IP---P-AD 254 (359)
Q Consensus 194 ~~~~vlDvG~G~---G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~----~~~~--v~~~~~d~~~~-----~p---~-~D 254 (359)
+...+||||||- |..-.-..+..|+.+++.+|. |-++..++ ..++ ..++.+|+.++ -| . .|
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 678999999995 455554455689999999999 44888777 2444 89999999763 12 1 33
Q ss_pred -----EEEEcchhccCCc-hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCH
Q 018205 255 -----AFFFKAIFHAFVD-EDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTE 328 (359)
Q Consensus 255 -----~i~~~~vl~~~~~-~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~ 328 (359)
.+++..+||+++| ++...+++.+++.|.| |+.|.|.....+.. .. ...............+..||.
T Consensus 148 ~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lap---GS~L~ish~t~d~~-p~----~~~~~~~~~~~~~~~~~~Rs~ 219 (267)
T PF04672_consen 148 FDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAP---GSYLAISHATDDGA-PE----RAEALEAVYAQAGSPGRPRSR 219 (267)
T ss_dssp TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-T---T-EEEEEEEB-TTS-HH----HHHHHHHHHHHCCS----B-H
T ss_pred CCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCC---CceEEEEecCCCCC-HH----HHHHHHHHHHcCCCCceecCH
Confidence 6889999999987 6788999999999999 77777766654332 11 111222222222345678999
Q ss_pred HHHHHHHHHcCCcee
Q 018205 329 KEWEKLFLDAGFSHF 343 (359)
Q Consensus 329 ~~~~~ll~~aGf~~~ 343 (359)
+++.++|. ||..+
T Consensus 220 ~ei~~~f~--g~elv 232 (267)
T PF04672_consen 220 EEIAAFFD--GLELV 232 (267)
T ss_dssp HHHHHCCT--TSEE-
T ss_pred HHHHHHcC--CCccC
Confidence 99999995 77754
No 129
>PRK03612 spermidine synthase; Provisional
Probab=98.62 E-value=2e-07 Score=91.35 Aligned_cols=97 Identities=15% Similarity=0.278 Sum_probs=72.0
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCC-CeEEEeec-ccccccCCC-------------CCCceEeeCCCCC---CCC-Cc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPG-IKCTVLDL-PHVVPKVPD-------------TDNLKFIAGDMFQ---SIP-PA 253 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-------------~~~v~~~~~d~~~---~~p-~~ 253 (359)
+++.+|||||||+|..+..+++ +|. .+++++|+ +++++.+++ .+|++++.+|..+ ..+ .|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 4578999999999999999987 455 79999999 558887764 3689999999854 222 59
Q ss_pred cEEEEcchhccCCch---HHHHHHHHHHHhcccCCCCcEEEEE
Q 018205 254 DAFFFKAIFHAFVDE---DCLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 254 D~i~~~~vl~~~~~~---~~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
|+|++...-...+.. -..++++++++.|+| ||.+++.
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~p---gG~lv~~ 414 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAP---DGLLVVQ 414 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCC---CeEEEEe
Confidence 999986432221111 123589999999999 8877764
No 130
>PRK01581 speE spermidine synthase; Validated
Probab=98.62 E-value=5.5e-08 Score=89.05 Aligned_cols=98 Identities=11% Similarity=0.104 Sum_probs=72.4
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC-------------CCCceEeeCCCCCC---C-CCcc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD-------------TDNLKFIAGDMFQS---I-PPAD 254 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~-------------~~~v~~~~~d~~~~---~-p~~D 254 (359)
..+.+||+||||.|..+..+++..+..+++++|++ ++++.|+. .+|++++.+|..+. . ..||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 45789999999999999998876556799999995 58887662 57999999998642 2 2499
Q ss_pred EEEEcchhc---cCCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 018205 255 AFFFKAIFH---AFVDEDCLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 255 ~i~~~~vl~---~~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
+|++...-. ....--...+++.+++.|+| ||.+++.
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkP---gGV~V~Q 267 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTE---DGAFVCQ 267 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCC---CcEEEEe
Confidence 999863210 01111225689999999999 8877664
No 131
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.60 E-value=1.1e-07 Score=87.30 Aligned_cols=119 Identities=14% Similarity=0.143 Sum_probs=78.9
Q ss_pred Hhhcccch-HHHHHhccccc---CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------------C
Q 018205 174 MASDSQLA-NLIVKDCQPIF---QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------------T 236 (359)
Q Consensus 174 m~~~~~~~-~~~~~~~~~~~---~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------------~ 236 (359)
|+....|. ..++..+.... .+..+|||+|||-|.-+....... -..++|+|++. .++.|++ .
T Consensus 38 lR~fNNwvKs~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~~-i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~ 116 (331)
T PF03291_consen 38 LRNFNNWVKSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKAK-IKHYVGIDISEESIEEARERYKQLKKRNNSKQ 116 (331)
T ss_dssp HHHHHHHHHHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HT
T ss_pred HHHHhHHHHHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhcC-CCEEEEEeCCHHHHHHHHHHHHHhcccccccc
Confidence 33333444 44555553111 167899999999999888887764 33899999965 7776651 1
Q ss_pred ----CCceEeeCCCCCC-----C--C--CccEEEEcchhccC--CchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 237 ----DNLKFIAGDMFQS-----I--P--PADAFFFKAIFHAF--VDEDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 237 ----~~v~~~~~d~~~~-----~--p--~~D~i~~~~vl~~~--~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
-...++.+|.+.. + + .||+|-|...+|+. +.+.+..+|+++.+.|+| ||.++...+.
T Consensus 117 ~~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~---GG~FIgT~~d 188 (331)
T PF03291_consen 117 YRFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKP---GGYFIGTTPD 188 (331)
T ss_dssp SEECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEE---EEEEEEEEE-
T ss_pred ccccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCC---CCEEEEEecC
Confidence 2346677877541 1 2 49999999999994 566778899999999999 7777766544
No 132
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.59 E-value=1.5e-07 Score=78.46 Aligned_cols=81 Identities=19% Similarity=0.388 Sum_probs=60.0
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC----CCCceEeeCCCCC-CCCC--cc
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD----TDNLKFIAGDMFQ-SIPP--AD 254 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~----~~~v~~~~~d~~~-~~p~--~D 254 (359)
.+++.++ ..+..+|||+|||+|.++..++++ ..+++++|++. +++.+++ .++++++.+|+.+ +.+. +|
T Consensus 4 ~i~~~~~--~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d 79 (169)
T smart00650 4 KIVRAAN--LRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPY 79 (169)
T ss_pred HHHHhcC--CCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCC
Confidence 4556665 556789999999999999999988 56899999954 7766552 4689999999966 3443 88
Q ss_pred EEEEcchhccCCch
Q 018205 255 AFFFKAIFHAFVDE 268 (359)
Q Consensus 255 ~i~~~~vl~~~~~~ 268 (359)
.|+++- -++...+
T Consensus 80 ~vi~n~-Py~~~~~ 92 (169)
T smart00650 80 KVVGNL-PYNISTP 92 (169)
T ss_pred EEEECC-CcccHHH
Confidence 887654 4444433
No 133
>PLN02366 spermidine synthase
Probab=98.56 E-value=2.2e-07 Score=84.53 Aligned_cols=97 Identities=16% Similarity=0.187 Sum_probs=71.2
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC----------CCCceEeeCCCCC---CCC--CccEE
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD----------TDNLKFIAGDMFQ---SIP--PADAF 256 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~----------~~~v~~~~~d~~~---~~p--~~D~i 256 (359)
+++.+||+||||.|.++..+++..+..+++.+|++. +++.+++ .+|++++.+|... ..+ .||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 457899999999999999998753345899999955 7776652 4699999999743 332 49999
Q ss_pred EEcchhccCCch--HHHHHHHHHHHhcccCCCCcEEEE
Q 018205 257 FFKAIFHAFVDE--DCLKILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 257 ~~~~vl~~~~~~--~~~~~L~~~~~~L~p~~~gG~lli 292 (359)
++-..-...+.. -...+++.+++.|+| ||.+++
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~p---gGvlv~ 204 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRP---GGVVCT 204 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCC---CcEEEE
Confidence 985432221111 134689999999999 787755
No 134
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.55 E-value=2.4e-07 Score=84.76 Aligned_cols=99 Identities=18% Similarity=0.301 Sum_probs=72.6
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCC-CeEEEeecc-cccccCCC------CCCceEeeCCCCCCC---C
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPG-IKCTVLDLP-HVVPKVPD------TDNLKFIAGDMFQSI---P 251 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~~-~~~~~a~~------~~~v~~~~~d~~~~~---p 251 (359)
.+++.++ .++..+|||||||+|.++..+++..+. .+++++|++ ++++.|++ .+++.++.+|..+.. .
T Consensus 71 ~ll~~L~--i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~ 148 (322)
T PRK13943 71 LFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFA 148 (322)
T ss_pred HHHHhcC--CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccC
Confidence 4445454 556789999999999999999998753 479999995 47766652 357899999985432 2
Q ss_pred CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 252 PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 252 ~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
.||+|++...+++. ...+.+.|+| ||.+++..
T Consensus 149 ~fD~Ii~~~g~~~i--------p~~~~~~Lkp---gG~Lvv~~ 180 (322)
T PRK13943 149 PYDVIFVTVGVDEV--------PETWFTQLKE---GGRVIVPI 180 (322)
T ss_pred CccEEEECCchHHh--------HHHHHHhcCC---CCEEEEEe
Confidence 49999987655443 2345678999 89887743
No 135
>PLN02672 methionine S-methyltransferase
Probab=98.55 E-value=4.4e-07 Score=94.24 Aligned_cols=65 Identities=20% Similarity=0.189 Sum_probs=54.1
Q ss_pred CCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC----------------------CCCceEeeCCCCCCCC
Q 018205 195 LGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD----------------------TDNLKFIAGDMFQSIP 251 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~----------------------~~~v~~~~~d~~~~~p 251 (359)
..+|||+|||+|..+..+++++|..+++++|++. +++.|+. .+|++++.+|+++..+
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 4689999999999999999999989999999954 7776641 1479999999977543
Q ss_pred ----CccEEEEc
Q 018205 252 ----PADAFFFK 259 (359)
Q Consensus 252 ----~~D~i~~~ 259 (359)
.||+|+++
T Consensus 199 ~~~~~fDlIVSN 210 (1082)
T PLN02672 199 DNNIELDRIVGC 210 (1082)
T ss_pred ccCCceEEEEEC
Confidence 49999975
No 136
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.55 E-value=2.2e-07 Score=83.52 Aligned_cols=98 Identities=15% Similarity=0.191 Sum_probs=72.4
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC----------CCCceEeeCCCCC---C-CCCccEEE
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD----------TDNLKFIAGDMFQ---S-IPPADAFF 257 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~----------~~~v~~~~~d~~~---~-~p~~D~i~ 257 (359)
+++.+||+||||+|.++..+++..+..+++++|++. +++.+++ .++++++.+|..+ . ...||+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 345799999999999999998876667899999954 7766552 3678888888744 1 22599999
Q ss_pred EcchhccCCchH--HHHHHHHHHHhcccCCCCcEEEEE
Q 018205 258 FKAIFHAFVDED--CLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 258 ~~~vl~~~~~~~--~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
+......-+... ..++++.+++.|+| ||.+++.
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~p---gG~lv~~ 185 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNE---DGIFVAQ 185 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCC---CcEEEEc
Confidence 865432222222 35789999999999 8887775
No 137
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.54 E-value=5.8e-07 Score=81.90 Aligned_cols=136 Identities=13% Similarity=0.248 Sum_probs=87.0
Q ss_pred CCChhhhcccCccHHHHHHHHHhhcccchHHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCC----CCeEEEeeccc
Q 018205 153 GTVFWDYMAKNPDFNSIYNQAMASDSQLANLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFP----GIKCTVLDLPH 228 (359)
Q Consensus 153 g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p----~~~~~~~D~~~ 228 (359)
|..+|+.+...|++.-.-.+ +.-.......+.+.++ +...|+|+|||+|.-+..|++... ...++.+|++.
T Consensus 40 Gs~LFe~It~lpEYYptr~E-~~iL~~~~~~Ia~~i~----~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~ 114 (319)
T TIGR03439 40 GLKLFEEITYSPEYYLTNDE-IEILKKHSSDIAASIP----SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSR 114 (319)
T ss_pred HHHHHHHHHcCCccCChHHH-HHHHHHHHHHHHHhcC----CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCH
Confidence 56667766666654211000 0000000135555544 456899999999998777766653 46799999975
Q ss_pred -ccccCC------CCCCceE--eeCCCCCC---CC------CccEE-EEcchhccCCchHHHHHHHHHHH-hcccCCCCc
Q 018205 229 -VVPKVP------DTDNLKF--IAGDMFQS---IP------PADAF-FFKAIFHAFVDEDCLKILKRCRE-AIASRGDRG 288 (359)
Q Consensus 229 -~~~~a~------~~~~v~~--~~~d~~~~---~p------~~D~i-~~~~vl~~~~~~~~~~~L~~~~~-~L~p~~~gG 288 (359)
+++.+. ..+.+++ +.+|+.+. ++ ...++ ++...+.+++++++..+|+++++ .|+| |+
T Consensus 115 ~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~---~d 191 (319)
T TIGR03439 115 SELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSP---SD 191 (319)
T ss_pred HHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCC---CC
Confidence 666543 2345555 78888442 21 24444 45679999999999999999999 9999 77
Q ss_pred EEEE-Eeee
Q 018205 289 KVII-IDIV 296 (359)
Q Consensus 289 ~lli-~~~~ 296 (359)
.++| +|..
T Consensus 192 ~lLiG~D~~ 200 (319)
T TIGR03439 192 SFLIGLDGC 200 (319)
T ss_pred EEEEecCCC
Confidence 7776 4433
No 138
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=6.2e-07 Score=75.71 Aligned_cols=99 Identities=14% Similarity=0.269 Sum_probs=76.7
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCCC------CCCceEeeCCCCCCCC---
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVPD------TDNLKFIAGDMFQSIP--- 251 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~~p--- 251 (359)
..+++.+. +++..+|||||||+|..+.-+++.-. +++.+|. ++..+.|++ ..+|.+.++|-..-+|
T Consensus 62 A~m~~~L~--~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~a 137 (209)
T COG2518 62 ARMLQLLE--LKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEA 137 (209)
T ss_pred HHHHHHhC--CCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCC
Confidence 34566666 77889999999999999999988753 8999998 557777762 5569999999966444
Q ss_pred CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 018205 252 PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDI 295 (359)
Q Consensus 252 ~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~ 295 (359)
.||.|+........|+. +++ .|++ ||++++-..
T Consensus 138 PyD~I~Vtaaa~~vP~~----Ll~----QL~~---gGrlv~PvG 170 (209)
T COG2518 138 PYDRIIVTAAAPEVPEA----LLD----QLKP---GGRLVIPVG 170 (209)
T ss_pred CcCEEEEeeccCCCCHH----HHH----hccc---CCEEEEEEc
Confidence 49999998887666532 444 5899 899998664
No 139
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.48 E-value=6.5e-07 Score=77.28 Aligned_cols=105 Identities=17% Similarity=0.331 Sum_probs=84.5
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHH-HCCCCeEEEeec-ccccccCCC-------CCCceEeeCCCCCC-CC
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISE-AFPGIKCTVLDL-PHVVPKVPD-------TDNLKFIAGDMFQS-IP 251 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~-~p 251 (359)
..++.... +.+.++|+|.|.|+|.++..|+. ..|.-+++.+|. ++..+.|++ .+++++..+|+.+. .+
T Consensus 84 ~~I~~~~g--i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~ 161 (256)
T COG2519 84 GYIVARLG--ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE 161 (256)
T ss_pred HHHHHHcC--CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccc
Confidence 35566666 78899999999999999999997 457779999999 458877763 46699999999663 33
Q ss_pred -CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecC
Q 018205 252 -PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVIN 298 (359)
Q Consensus 252 -~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~ 298 (359)
.||.|++ +++++ ...+.+++++|+| ||.+.+..++.+
T Consensus 162 ~~vDav~L-----Dmp~P--W~~le~~~~~Lkp---gg~~~~y~P~ve 199 (256)
T COG2519 162 EDVDAVFL-----DLPDP--WNVLEHVSDALKP---GGVVVVYSPTVE 199 (256)
T ss_pred cccCEEEE-----cCCCh--HHHHHHHHHHhCC---CcEEEEEcCCHH
Confidence 5999987 56666 5699999999999 899999776654
No 140
>PHA03412 putative methyltransferase; Provisional
Probab=98.46 E-value=6.3e-07 Score=77.34 Aligned_cols=94 Identities=20% Similarity=0.264 Sum_probs=69.7
Q ss_pred CCeEEEeCCCcchHHHHHHHHC---CCCeEEEeeccc-ccccCCC-CCCceEeeCCCCC-CCC-CccEEEEcchhccCC-
Q 018205 195 LGSLVDVGGGTGSFARIISEAF---PGIKCTVLDLPH-VVPKVPD-TDNLKFIAGDMFQ-SIP-PADAFFFKAIFHAFV- 266 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~---p~~~~~~~D~~~-~~~~a~~-~~~v~~~~~d~~~-~~p-~~D~i~~~~vl~~~~- 266 (359)
..+|||+|||+|.++..++++. +..+++++|+.. +++.|+. ..++.+..+|+.. ... .||+|+++==++...
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~~ 129 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISNPPFGKIKT 129 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEECCCCCCccc
Confidence 5799999999999999999875 367999999954 8888874 4578999999965 333 599999874433221
Q ss_pred -c--------hHHHHHHHHHHHhcccCCCCcEEEE
Q 018205 267 -D--------EDCLKILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 267 -~--------~~~~~~L~~~~~~L~p~~~gG~lli 292 (359)
+ .-...+++++.+++++ |.+++
T Consensus 130 ~d~~ar~~g~~~~~~li~~A~~Ll~~----G~~IL 160 (241)
T PHA03412 130 SDFKGKYTGAEFEYKVIERASQIARQ----GTFII 160 (241)
T ss_pred cccCCcccccHHHHHHHHHHHHHcCC----CEEEe
Confidence 1 2245689999997776 66644
No 141
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.45 E-value=6.5e-07 Score=78.64 Aligned_cols=97 Identities=18% Similarity=0.215 Sum_probs=72.9
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCC-CCeEEEeecc-cccccCCC-------CCCceEeeCCCCCC---------CCCcc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFP-GIKCTVLDLP-HVVPKVPD-------TDNLKFIAGDMFQS---------IPPAD 254 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~-~~~~~a~~-------~~~v~~~~~d~~~~---------~p~~D 254 (359)
.++.+|||+|||+|..+..++...+ +.+++.+|++ ++++.|++ .++++++.+|..+. .+.||
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 4578999999999999888888765 6799999994 47776652 46899999998542 12599
Q ss_pred EEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecC
Q 018205 255 AFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVIN 298 (359)
Q Consensus 255 ~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~ 298 (359)
+|++-. ..+....++..+.+.|+| ||. ++++....
T Consensus 147 ~VfiDa-----~k~~y~~~~~~~~~ll~~---GG~-ii~dn~l~ 181 (234)
T PLN02781 147 FAFVDA-----DKPNYVHFHEQLLKLVKV---GGI-IAFDNTLW 181 (234)
T ss_pred EEEECC-----CHHHHHHHHHHHHHhcCC---CeE-EEEEcCCc
Confidence 998732 234456789999999999 665 55555443
No 142
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.42 E-value=3.6e-07 Score=78.47 Aligned_cols=100 Identities=16% Similarity=0.319 Sum_probs=71.3
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeec-ccccccCC------CCCCceEeeCCCCCCCC--
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDL-PHVVPKVP------DTDNLKFIAGDMFQSIP-- 251 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~------~~~~v~~~~~d~~~~~p-- 251 (359)
..+++.+. +.+..+|||||||+|.++..+++.. +.-+++++|. +...+.|+ ...++.++.+|.....+
T Consensus 62 a~~l~~L~--l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~ 139 (209)
T PF01135_consen 62 ARMLEALD--LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEE 139 (209)
T ss_dssp HHHHHHTT--C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG
T ss_pred HHHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccC
Confidence 45666676 7788999999999999999998875 3447999999 55777776 25689999999865443
Q ss_pred -CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 252 -PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 252 -~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
.||.|++.......+ ..+.+.|++ ||++++.-
T Consensus 140 apfD~I~v~~a~~~ip--------~~l~~qL~~---gGrLV~pi 172 (209)
T PF01135_consen 140 APFDRIIVTAAVPEIP--------EALLEQLKP---GGRLVAPI 172 (209)
T ss_dssp -SEEEEEESSBBSS----------HHHHHTEEE---EEEEEEEE
T ss_pred CCcCEEEEeeccchHH--------HHHHHhcCC---CcEEEEEE
Confidence 499999988775443 234456899 88888744
No 143
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.40 E-value=6.1e-07 Score=79.43 Aligned_cols=103 Identities=19% Similarity=0.239 Sum_probs=77.5
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC--------CC----CceEeeCCCCC-
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD--------TD----NLKFIAGDMFQ- 248 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~--------~~----~v~~~~~d~~~- 248 (359)
.++..+. ++...++|+|||-|.-++..-++. --.++++|+.+ .++.|+. .. .+.|+++|.+.
T Consensus 109 ~LI~~y~---~~~~~~~~LgCGKGGDLlKw~kAg-I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~ 184 (389)
T KOG1975|consen 109 VLINLYT---KRGDDVLDLGCGKGGDLLKWDKAG-IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKE 184 (389)
T ss_pred HHHHHHh---ccccccceeccCCcccHhHhhhhc-ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchh
Confidence 4444443 567889999999999888877663 22799999977 7887762 11 36888898853
Q ss_pred --------CCCCccEEEEcchhcc-C-CchHHHHHHHHHHHhcccCCCCcEEEE
Q 018205 249 --------SIPPADAFFFKAIFHA-F-VDEDCLKILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 249 --------~~p~~D~i~~~~vl~~-~-~~~~~~~~L~~~~~~L~p~~~gG~lli 292 (359)
+.|.||+|-|.+++|+ | +.+.++.+|+++.+.|+| ||.+|-
T Consensus 185 ~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~Lkp---GG~FIg 235 (389)
T KOG1975|consen 185 RLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKP---GGVFIG 235 (389)
T ss_pred HHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCC---CcEEEE
Confidence 1235999999999998 3 466778899999999999 776554
No 144
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.40 E-value=1.4e-06 Score=83.48 Aligned_cols=110 Identities=19% Similarity=0.188 Sum_probs=78.0
Q ss_pred HHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----CCCceEeeCCCCCC---C-C-Cc
Q 018205 185 VKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----TDNLKFIAGDMFQS---I-P-PA 253 (359)
Q Consensus 185 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----~~~v~~~~~d~~~~---~-p-~~ 253 (359)
+..++ ..+..+|||+|||+|..+..+++..++.+++++|++. +++.+++ ..+++++.+|+.+. . + .|
T Consensus 237 ~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~f 314 (427)
T PRK10901 237 ATLLA--PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPF 314 (427)
T ss_pred HHHcC--CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCC
Confidence 33444 4567899999999999999999998778999999954 7776652 22478899998642 1 2 49
Q ss_pred cEEEE----cc--hhcc-------CCchH-------HHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 018205 254 DAFFF----KA--IFHA-------FVDED-------CLKILKRCREAIASRGDRGKVIIIDIVINE 299 (359)
Q Consensus 254 D~i~~----~~--vl~~-------~~~~~-------~~~~L~~~~~~L~p~~~gG~lli~~~~~~~ 299 (359)
|.|++ +. ++.. ...++ ..++|+++.+.|+| ||.+++.+.....
T Consensus 315 D~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~Lkp---GG~lvystcs~~~ 377 (427)
T PRK10901 315 DRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKP---GGTLLYATCSILP 377 (427)
T ss_pred CEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCCCh
Confidence 99994 22 1111 11111 24689999999999 8999887765443
No 145
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.40 E-value=4e-06 Score=70.87 Aligned_cols=120 Identities=16% Similarity=0.200 Sum_probs=87.9
Q ss_pred CCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCCCCCceEeeCCCCC-CCC-----CccEEEEcchhccCCch
Q 018205 195 LGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPDTDNLKFIAGDMFQ-SIP-----PADAFFFKAIFHAFVDE 268 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~-~~p-----~~D~i~~~~vl~~~~~~ 268 (359)
..++|||||=+...... ..+-..++.+|+... .-.+.+.||++ ++| .||+|.++.||.+.|++
T Consensus 52 ~lrlLEVGals~~N~~s---~~~~fdvt~IDLns~--------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p 120 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACS---TSGWFDVTRIDLNSQ--------HPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDP 120 (219)
T ss_pred cceEEeecccCCCCccc---ccCceeeEEeecCCC--------CCCceeeccccCCCCCCcccceeEEEEEEEEeeCCCH
Confidence 47999999964433222 244557999998331 12456688876 565 39999999999999855
Q ss_pred -HHHHHHHHHHHhcccCCCCcE-----EEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCce
Q 018205 269 -DCLKILKRCREAIASRGDRGK-----VIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSH 342 (359)
Q Consensus 269 -~~~~~L~~~~~~L~p~~~gG~-----lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~ 342 (359)
+.-++|+++++.|+| +|. ++|+-+... ..|.+..+.+.|.++++..||..
T Consensus 121 ~~RG~Ml~r~~~fL~~---~g~~~~~~LFlVlP~~C---------------------v~NSRy~~~~~l~~im~~LGf~~ 176 (219)
T PF11968_consen 121 KQRGEMLRRAHKFLKP---PGLSLFPSLFLVLPLPC---------------------VTNSRYMTEERLREIMESLGFTR 176 (219)
T ss_pred HHHHHHHHHHHHHhCC---CCccCcceEEEEeCchH---------------------hhcccccCHHHHHHHHHhCCcEE
Confidence 556899999999999 787 666532211 13456678999999999999999
Q ss_pred eEEEEeC
Q 018205 343 FKITPVY 349 (359)
Q Consensus 343 ~~~~~~~ 349 (359)
++.....
T Consensus 177 ~~~~~~~ 183 (219)
T PF11968_consen 177 VKYKKSK 183 (219)
T ss_pred EEEEecC
Confidence 8887664
No 146
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.38 E-value=2.2e-06 Score=78.20 Aligned_cols=144 Identities=17% Similarity=0.218 Sum_probs=88.4
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC--------CCCceEeeC----CCCCCC--C--CccEE
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD--------TDNLKFIAG----DMFQSI--P--PADAF 256 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~--------~~~v~~~~~----d~~~~~--p--~~D~i 256 (359)
...++||||||+|.....++.+.++++++++|++. +++.|+. .++|++... +++..+ + .||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 45899999999999888888888899999999954 8877762 246777542 333322 2 49999
Q ss_pred EEcchhccCCchHH---HHHHHH----------------HHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhh
Q 018205 257 FFKAIFHAFVDEDC---LKILKR----------------CREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLM 317 (359)
Q Consensus 257 ~~~~vl~~~~~~~~---~~~L~~----------------~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (359)
+|+==+|.-..+.. ..-.+. ..+++.+ ||.+-++.....+... + .....+-..
T Consensus 194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~---GGe~~fi~~mi~eS~~---~-~~~~gwfts- 265 (321)
T PRK11727 194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCE---GGEVAFIKRMIEESKA---F-AKQVLWFTS- 265 (321)
T ss_pred EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeC---CcEeeeehHhhHHHHH---H-HhhCcEEEE-
Confidence 99877765443311 111221 1233344 5665554443332210 0 000011111
Q ss_pred hhhcCCcccCHHHHHHHHHHcCCceeEEEEe
Q 018205 318 MVAVRGSERTEKEWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 318 ~~~~~g~~~t~~~~~~ll~~aGf~~~~~~~~ 348 (359)
.-|+.-+.+.+.+.|++.|.+.+.+..+
T Consensus 266 ---mv~kk~~l~~l~~~L~~~~~~~~~~~e~ 293 (321)
T PRK11727 266 ---LVSKKENLPPLYRALKKVGAVEVKTIEM 293 (321)
T ss_pred ---EeeccCCHHHHHHHHHHcCCceEEEEEE
Confidence 1244558999999999999988888776
No 147
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.38 E-value=1.7e-06 Score=82.93 Aligned_cols=111 Identities=16% Similarity=0.163 Sum_probs=78.7
Q ss_pred HHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCCC-C----C
Q 018205 185 VKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQS-I----P 251 (359)
Q Consensus 185 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~~-~----p 251 (359)
...++ ..+..+|||+|||+|..+..+++..+..+++++|++. +++.+++ ..++.+..+|.... . .
T Consensus 231 ~~~L~--~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~ 308 (426)
T TIGR00563 231 ATWLA--PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENE 308 (426)
T ss_pred HHHhC--CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccccccc
Confidence 34444 4566899999999999999999988877999999954 7766552 11334466776431 1 2
Q ss_pred CccEEEE------cchhccCCc-------hH-------HHHHHHHHHHhcccCCCCcEEEEEeeecCCC
Q 018205 252 PADAFFF------KAIFHAFVD-------ED-------CLKILKRCREAIASRGDRGKVIIIDIVINEK 300 (359)
Q Consensus 252 ~~D~i~~------~~vl~~~~~-------~~-------~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~ 300 (359)
.||.|++ ..+++..++ ++ ..++|+++.+.|+| ||.+++.+......
T Consensus 309 ~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lkp---gG~lvystcs~~~~ 374 (426)
T TIGR00563 309 QFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKT---GGTLVYATCSVLPE 374 (426)
T ss_pred ccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeCCCChh
Confidence 4999985 245554433 11 25799999999999 99999988777543
No 148
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.37 E-value=2.5e-06 Score=68.53 Aligned_cols=110 Identities=15% Similarity=0.144 Sum_probs=88.7
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeec-cccccc-CCCCCCceEeeCCCCC-C-----C--
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDL-PHVVPK-VPDTDNLKFIAGDMFQ-S-----I-- 250 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~-a~~~~~v~~~~~d~~~-~-----~-- 250 (359)
+.+.+.++ +..+.-|+|+|.|+|.++.+++++. +..+++.++. ++.... -+..+.++++.+|.++ . .
T Consensus 38 ~~M~s~I~--pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~g 115 (194)
T COG3963 38 RKMASVID--PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKG 115 (194)
T ss_pred HHHHhccC--cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCC
Confidence 55666666 6677899999999999999998874 5568999998 454444 3457888899999864 1 2
Q ss_pred CCccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 251 PPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 251 p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
+.||.|++.--+-.++-....++|+++...|++ ||.++-+.+.
T Consensus 116 q~~D~viS~lPll~~P~~~~iaile~~~~rl~~---gg~lvqftYg 158 (194)
T COG3963 116 QFFDSVISGLPLLNFPMHRRIAILESLLYRLPA---GGPLVQFTYG 158 (194)
T ss_pred CeeeeEEeccccccCcHHHHHHHHHHHHHhcCC---CCeEEEEEec
Confidence 349999999988899988888999999999999 8888887766
No 149
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.36 E-value=2.8e-06 Score=81.97 Aligned_cols=105 Identities=16% Similarity=0.230 Sum_probs=75.5
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCC-CCeEEEeeccc-ccccCCC------CCCceEeeCCCCCCCC--CccEEEEc--
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFP-GIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQSIP--PADAFFFK-- 259 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~~~p--~~D~i~~~-- 259 (359)
..++.+|||+|||+|..+..+++..+ ..+++++|++. +++.+++ ..+++++.+|+.+..+ .||+|++-
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~P 327 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDAP 327 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEEcCC
Confidence 34568999999999999998888654 45899999955 8776652 2468999999855323 49999951
Q ss_pred ----chhc-------cCCchH-------HHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 018205 260 ----AIFH-------AFVDED-------CLKILKRCREAIASRGDRGKVIIIDIVINE 299 (359)
Q Consensus 260 ----~vl~-------~~~~~~-------~~~~L~~~~~~L~p~~~gG~lli~~~~~~~ 299 (359)
.++. .++.++ ..++|.++.+.|+| ||.+++.+.....
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkp---gG~lvystcs~~~ 382 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKP---GGVLVYATCSIEP 382 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeCCCCh
Confidence 1111 122222 23689999999999 8999887766653
No 150
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.35 E-value=2.3e-06 Score=82.60 Aligned_cols=104 Identities=19% Similarity=0.237 Sum_probs=74.5
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeeccc-ccccCCC------CCCceEeeCCCCCC---CC-CccEEEEc
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQS---IP-PADAFFFK 259 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~~---~p-~~D~i~~~ 259 (359)
..+..+|||+|||+|..+..+++.. ++.+++++|++. +++.+++ ..+++++.+|+.+. ++ .||+|++.
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D 327 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVD 327 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEc
Confidence 4556899999999999999999886 567999999954 7766542 24589999998542 33 59999963
Q ss_pred c------hhccC-------CchH-------HHHHHHHHHHhcccCCCCcEEEEEeeecC
Q 018205 260 A------IFHAF-------VDED-------CLKILKRCREAIASRGDRGKVIIIDIVIN 298 (359)
Q Consensus 260 ~------vl~~~-------~~~~-------~~~~L~~~~~~L~p~~~gG~lli~~~~~~ 298 (359)
- ++.+. ...+ ...+|+.+.++|+| ||.+++......
T Consensus 328 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp---GG~lvystcs~~ 383 (444)
T PRK14902 328 APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKK---GGILVYSTCTIE 383 (444)
T ss_pred CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCC---CCEEEEEcCCCC
Confidence 1 11111 1111 14689999999999 899887665543
No 151
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.33 E-value=1.3e-06 Score=72.97 Aligned_cols=102 Identities=14% Similarity=0.188 Sum_probs=65.9
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCC---------CCCCceEeeCCCCCCC------C-CccE
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVP---------DTDNLKFIAGDMFQSI------P-PADA 255 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~---------~~~~v~~~~~d~~~~~------p-~~D~ 255 (359)
...+.+|||+|||+|..+..++...+..+++..|.++.++..+ ...++.+...|--++. + .||+
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 4467899999999999999999886777999999976554333 1467788877763321 2 4999
Q ss_pred EEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecC
Q 018205 256 FFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVIN 298 (359)
Q Consensus 256 i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~ 298 (359)
|+.+.++++ ++....+++.+.++|++ +|.+++....+.
T Consensus 123 IlasDv~Y~--~~~~~~L~~tl~~ll~~---~~~vl~~~~~R~ 160 (173)
T PF10294_consen 123 ILASDVLYD--EELFEPLVRTLKRLLKP---NGKVLLAYKRRR 160 (173)
T ss_dssp EEEES--S---GGGHHHHHHHHHHHBTT----TTEEEEEE-S-
T ss_pred EEEecccch--HHHHHHHHHHHHHHhCC---CCEEEEEeCEec
Confidence 999999986 36667899999999999 777777766653
No 152
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.33 E-value=6.1e-06 Score=79.58 Aligned_cols=98 Identities=11% Similarity=0.157 Sum_probs=66.5
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCCC-----
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQS----- 249 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~~----- 249 (359)
..+++.+. ..+..+|||+|||+|.++..+++.. .+++++|++. +++.|++ ..+++++.+|+.+.
T Consensus 287 ~~vl~~l~--~~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~ 362 (443)
T PRK13168 287 ARALEWLD--PQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQP 362 (443)
T ss_pred HHHHHHhc--CCCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhh
Confidence 34444444 3456899999999999999999884 5899999965 8887762 34699999998532
Q ss_pred C--CCccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEE
Q 018205 250 I--PPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 250 ~--p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli 292 (359)
+ ..||+|++.- |......+++.+.+ ++| ++.+++
T Consensus 363 ~~~~~fD~Vi~dP-----Pr~g~~~~~~~l~~-~~~---~~ivyv 398 (443)
T PRK13168 363 WALGGFDKVLLDP-----PRAGAAEVMQALAK-LGP---KRIVYV 398 (443)
T ss_pred hhcCCCCEEEECc-----CCcChHHHHHHHHh-cCC---CeEEEE
Confidence 1 1389998632 22222345565555 577 455444
No 153
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.33 E-value=1.8e-06 Score=73.46 Aligned_cols=96 Identities=17% Similarity=0.308 Sum_probs=67.8
Q ss_pred CeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCC------CCCCceEeeCCCCCC----CC--CccEEEEcchh
Q 018205 196 GSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVP------DTDNLKFIAGDMFQS----IP--PADAFFFKAIF 262 (359)
Q Consensus 196 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~------~~~~v~~~~~d~~~~----~p--~~D~i~~~~vl 262 (359)
..+||||||.|.++..+|+.+|+..++|+|+. ..+..+. ...++.++.+|+..- ++ ..|-|.+.+-=
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD 98 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPD 98 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCC
Confidence 38999999999999999999999999999994 3554443 478999999998541 22 36766654321
Q ss_pred ccCCch-------HHHHHHHHHHHhcccCCCCcEEEEEee
Q 018205 263 HAFVDE-------DCLKILKRCREAIASRGDRGKVIIIDI 295 (359)
Q Consensus 263 ~~~~~~-------~~~~~L~~~~~~L~p~~~gG~lli~~~ 295 (359)
.|+.. -...+|+.+.++|+| ||.|.+.+-
T Consensus 99 -PWpK~rH~krRl~~~~fl~~~~~~L~~---gG~l~~~TD 134 (195)
T PF02390_consen 99 -PWPKKRHHKRRLVNPEFLELLARVLKP---GGELYFATD 134 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEE---EEEEEEEES
T ss_pred -CCcccchhhhhcCCchHHHHHHHHcCC---CCEEEEEeC
Confidence 12211 124799999999999 898888663
No 154
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.33 E-value=1.6e-06 Score=72.77 Aligned_cols=93 Identities=15% Similarity=0.305 Sum_probs=68.2
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCCCCC--ceEeeCCCCCCCC---C-ccEEEEcchhc---
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPDTDN--LKFIAGDMFQSIP---P-ADAFFFKAIFH--- 263 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~--v~~~~~d~~~~~p---~-~D~i~~~~vl~--- 263 (359)
.+.-|||||||+|..+..|... +...+|+|++ .|++.|.+ .. -.++.+|+-+.+| + ||.+++...+.
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~-~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWLc 126 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVE-RELEGDLILCDMGEGLPFRPGTFDGVISISAVQWLC 126 (270)
T ss_pred CCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHH-hhhhcCeeeeecCCCCCCCCCccceEEEeeeeeeec
Confidence 4788999999999988887765 5789999995 49998874 22 3577788865443 3 99888654432
Q ss_pred ------cCCchHHHHHHHHHHHhcccCCCCcEEEE
Q 018205 264 ------AFVDEDCLKILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 264 ------~~~~~~~~~~L~~~~~~L~p~~~gG~lli 292 (359)
|.+......++..++.+|++ |++-++
T Consensus 127 nA~~s~~~P~~Rl~~FF~tLy~~l~r---g~raV~ 158 (270)
T KOG1541|consen 127 NADKSLHVPKKRLLRFFGTLYSCLKR---GARAVL 158 (270)
T ss_pred ccCccccChHHHHHHHhhhhhhhhcc---CceeEE
Confidence 22344556788999999999 777665
No 155
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.26 E-value=3e-06 Score=75.69 Aligned_cols=80 Identities=16% Similarity=0.303 Sum_probs=60.4
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC----CCCceEeeCCCCC-CCCCccE
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD----TDNLKFIAGDMFQ-SIPPADA 255 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~----~~~v~~~~~d~~~-~~p~~D~ 255 (359)
..+++.++ ..+..+|||||||+|.++..++++ ..+++++|++. +++.+++ .++++++.+|+++ +++.+|.
T Consensus 19 ~~iv~~~~--~~~~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~d~ 94 (258)
T PRK14896 19 DRIVEYAE--DTDGDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEFNK 94 (258)
T ss_pred HHHHHhcC--CCCcCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhceE
Confidence 34555554 456789999999999999999998 45899999954 7766552 4689999999976 5667898
Q ss_pred EEEcchhccCC
Q 018205 256 FFFKAIFHAFV 266 (359)
Q Consensus 256 i~~~~vl~~~~ 266 (359)
|+++-- ++.+
T Consensus 95 Vv~NlP-y~i~ 104 (258)
T PRK14896 95 VVSNLP-YQIS 104 (258)
T ss_pred EEEcCC-cccC
Confidence 877544 3444
No 156
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.26 E-value=5.9e-07 Score=76.87 Aligned_cols=97 Identities=25% Similarity=0.359 Sum_probs=74.1
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCC-CCeEEEeec-ccccccCCC-------CCCceEeeCCCCCC---------CCCcc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFP-GIKCTVLDL-PHVVPKVPD-------TDNLKFIAGDMFQS---------IPPAD 254 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~---------~p~~D 254 (359)
.++++|||||+++|.-+..+++..| +.+++.+|+ ++..+.|++ .++|+++.+|..+. ...||
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 4579999999999999999999886 689999999 447666652 57999999998541 12499
Q ss_pred EEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecC
Q 018205 255 AFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVIN 298 (359)
Q Consensus 255 ~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~ 298 (359)
+|++-. ........+..+.+.|+| |.++|+|....
T Consensus 124 ~VFiDa-----~K~~y~~y~~~~~~ll~~----ggvii~DN~l~ 158 (205)
T PF01596_consen 124 FVFIDA-----DKRNYLEYFEKALPLLRP----GGVIIADNVLW 158 (205)
T ss_dssp EEEEES-----TGGGHHHHHHHHHHHEEE----EEEEEEETTTG
T ss_pred EEEEcc-----cccchhhHHHHHhhhccC----CeEEEEccccc
Confidence 999744 345567789999999999 66777776654
No 157
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.26 E-value=4.8e-06 Score=73.10 Aligned_cols=103 Identities=17% Similarity=0.307 Sum_probs=75.2
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHH-CCCCeEEEeecc-cccccCCC-------CCCceEeeCCCCC-CC--
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEA-FPGIKCTVLDLP-HVVPKVPD-------TDNLKFIAGDMFQ-SI-- 250 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~~-~~~~~a~~-------~~~v~~~~~d~~~-~~-- 250 (359)
.++..++ +.++.+|||.|.|+|.++..|++. .|.-+++.+|.. +..+.|++ .+++++...|+.+ .+
T Consensus 31 ~I~~~l~--i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~ 108 (247)
T PF08704_consen 31 YILMRLD--IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDE 108 (247)
T ss_dssp HHHHHTT----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--ST
T ss_pred HHHHHcC--CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccc
Confidence 4556666 778999999999999999999975 588899999994 47776662 5689999999843 23
Q ss_pred ---CCccEEEEcchhccCCchHHHHHHHHHHHhc-ccCCCCcEEEEEeeec
Q 018205 251 ---PPADAFFFKAIFHAFVDEDCLKILKRCREAI-ASRGDRGKVIIIDIVI 297 (359)
Q Consensus 251 ---p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L-~p~~~gG~lli~~~~~ 297 (359)
..+|.|++ +++++ ...+..+.++| ++ ||.+.+..++.
T Consensus 109 ~~~~~~DavfL-----Dlp~P--w~~i~~~~~~L~~~---gG~i~~fsP~i 149 (247)
T PF08704_consen 109 ELESDFDAVFL-----DLPDP--WEAIPHAKRALKKP---GGRICCFSPCI 149 (247)
T ss_dssp T-TTSEEEEEE-----ESSSG--GGGHHHHHHHE-EE---EEEEEEEESSH
T ss_pred cccCcccEEEE-----eCCCH--HHHHHHHHHHHhcC---CceEEEECCCH
Confidence 24899886 56666 44899999999 88 89998877554
No 158
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.25 E-value=1.6e-05 Score=69.15 Aligned_cols=145 Identities=14% Similarity=0.114 Sum_probs=86.6
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccc-cCCCCCCce-EeeCCCCC----CC----
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVP-KVPDTDNLK-FIAGDMFQ----SI---- 250 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~-~a~~~~~v~-~~~~d~~~----~~---- 250 (359)
..+++.++ ...+..++||+|||+|.++..+++.. ..+++++|++. ++. ..++..++. +...|+.. .+
T Consensus 64 ~~~l~~~~-~~~~~~~vlDiG~gtG~~t~~l~~~g-a~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~ 141 (228)
T TIGR00478 64 KEALEEFN-IDVKNKIVLDVGSSTGGFTDCALQKG-AKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDF 141 (228)
T ss_pred HHHHHhcC-CCCCCCEEEEcccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCc
Confidence 45555554 12356799999999999999999873 45899999955 554 355556654 33334421 11
Q ss_pred CCccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHH
Q 018205 251 PPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKE 330 (359)
Q Consensus 251 p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~ 330 (359)
+.+|+++++..+ +|..+.++|+| +-.++++.+.+.-..... .......|-. ......++
T Consensus 142 ~~~DvsfiS~~~----------~l~~i~~~l~~---~~~~~L~KPqFE~~~~~~--~~~giv~~~~------~~~~~~~~ 200 (228)
T TIGR00478 142 ATFDVSFISLIS----------ILPELDLLLNP---NDLTLLFKPQFEAGREKK--NKKGVVRDKE------AIALALHK 200 (228)
T ss_pred eeeeEEEeehHh----------HHHHHHHHhCc---CeEEEEcChHhhhcHhhc--CcCCeecCHH------HHHHHHHH
Confidence 237777766543 57888889998 555556654443322100 0000000000 01224567
Q ss_pred HHHHHHHcCCceeEEEEeC
Q 018205 331 WEKLFLDAGFSHFKITPVY 349 (359)
Q Consensus 331 ~~~ll~~aGf~~~~~~~~~ 349 (359)
+...+.+.||++..+.+.+
T Consensus 201 ~~~~~~~~~~~~~~~~~s~ 219 (228)
T TIGR00478 201 VIDKGESPDFQEKKIIFSL 219 (228)
T ss_pred HHHHHHcCCCeEeeEEECC
Confidence 7778888999988887664
No 159
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.24 E-value=6.5e-06 Score=79.14 Aligned_cols=104 Identities=15% Similarity=0.189 Sum_probs=76.4
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCC-CCeEEEeeccc-ccccCCC------CCCceEeeCCCCCCC-------CCccEE
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFP-GIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQSI-------PPADAF 256 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~~~-------p~~D~i 256 (359)
..+..+|||+|||+|..+..+++..+ ..+++++|++. +++.+++ ..+++++.+|..+.. ..||.|
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 329 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRI 329 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEE
Confidence 44568999999999999999998864 46899999954 7776652 346899999985421 149999
Q ss_pred EEc------chhccCCc-------hH-------HHHHHHHHHHhcccCCCCcEEEEEeeecC
Q 018205 257 FFK------AIFHAFVD-------ED-------CLKILKRCREAIASRGDRGKVIIIDIVIN 298 (359)
Q Consensus 257 ~~~------~vl~~~~~-------~~-------~~~~L~~~~~~L~p~~~gG~lli~~~~~~ 298 (359)
++. .++++.++ ++ ..++|+++.+.|+| ||.++..+....
T Consensus 330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkp---gG~lvystcsi~ 388 (434)
T PRK14901 330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKP---GGTLVYATCTLH 388 (434)
T ss_pred EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCCC
Confidence 962 34444332 11 25789999999999 899888776554
No 160
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.24 E-value=1.5e-06 Score=83.18 Aligned_cols=129 Identities=18% Similarity=0.244 Sum_probs=81.1
Q ss_pred CChhhhcccCccHHHHHHHHHhhcccchHHHHHhcccc--cCCCCeEEEeCCCcchHHHHHHHHC----CCCeEEEeecc
Q 018205 154 TVFWDYMAKNPDFNSIYNQAMASDSQLANLIVKDCQPI--FQGLGSLVDVGGGTGSFARIISEAF----PGIKCTVLDLP 227 (359)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~----p~~~~~~~D~~ 227 (359)
...|+.+++|+...+.|.+|+.. ++.+..... -.+...|+|||||+|-++...+++. ...++++++-.
T Consensus 150 s~tYe~fE~D~vKY~~Ye~AI~~------al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn 223 (448)
T PF05185_consen 150 SQTYEVFEKDPVKYDQYERAIEE------ALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKN 223 (448)
T ss_dssp HHHHHHHCC-HHHHHHHHHHHHH------HHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESS
T ss_pred cccHhhHhcCHHHHHHHHHHHHH------HHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCC
Confidence 34577788888888888877642 333333210 1135789999999999987776654 34689999974
Q ss_pred c-ccccC----C--C-CCCceEeeCCCCC-CCC-CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEE
Q 018205 228 H-VVPKV----P--D-TDNLKFIAGDMFQ-SIP-PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 228 ~-~~~~a----~--~-~~~v~~~~~d~~~-~~p-~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli 292 (359)
. ++... + . .++|+++.+|+.+ ..| .+|+|++=..=.....+-..+.|....+.|+| +| ++|
T Consensus 224 ~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp---~G-i~I 294 (448)
T PF05185_consen 224 PNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSELLGSFGDNELSPECLDAADRFLKP---DG-IMI 294 (448)
T ss_dssp THHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEE---EE-EEE
T ss_pred HhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEeccCCccccccCHHHHHHHHhhcCC---CC-EEe
Confidence 3 22221 1 1 5889999999976 556 49999974443222334556788888999999 54 444
No 161
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.24 E-value=2.3e-06 Score=72.25 Aligned_cols=142 Identities=17% Similarity=0.251 Sum_probs=96.6
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC--CCCc--eEeeCCCCC-CCC--CccEEEEcchhcc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD--TDNL--KFIAGDMFQ-SIP--PADAFFFKAIFHA 264 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~--~~~v--~~~~~d~~~-~~p--~~D~i~~~~vl~~ 264 (359)
.....++|||||-|.....+.... --+.+-+|.+. |++.++. .+.+ ....+|-.. ++. .+|+|+++..+|.
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW 149 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHW 149 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhh
Confidence 456789999999999999998774 23789999976 8888773 2444 555666522 333 4999999999987
Q ss_pred CCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCc------ccCHHHHHHHHHHc
Q 018205 265 FVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGS------ERTEKEWEKLFLDA 338 (359)
Q Consensus 265 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~------~~t~~~~~~ll~~a 338 (359)
.++ .+..+.+|+.+||| +| ++|......+. +.+......+..+-..+|- .-...++-.+|.+|
T Consensus 150 ~Nd--LPg~m~~ck~~lKP---Dg-~FiasmlggdT-----LyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rA 218 (325)
T KOG2940|consen 150 TND--LPGSMIQCKLALKP---DG-LFIASMLGGDT-----LYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRA 218 (325)
T ss_pred hcc--CchHHHHHHHhcCC---Cc-cchhHHhcccc-----HHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhc
Confidence 654 46799999999999 55 55655555443 3333332333322222332 22467888999999
Q ss_pred CCceeEEE
Q 018205 339 GFSHFKIT 346 (359)
Q Consensus 339 Gf~~~~~~ 346 (359)
||....+-
T Consensus 219 GF~m~tvD 226 (325)
T KOG2940|consen 219 GFSMLTVD 226 (325)
T ss_pred Ccccceec
Confidence 99976553
No 162
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.24 E-value=3.4e-06 Score=75.13 Aligned_cols=90 Identities=14% Similarity=0.255 Sum_probs=62.7
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC----CCCceEeeCCCCC-CCCCcc-
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD----TDNLKFIAGDMFQ-SIPPAD- 254 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~----~~~v~~~~~d~~~-~~p~~D- 254 (359)
..+++.++ ..+..+|||||||+|.++..++++.+ +++++|+++ +++.++. ..+++++.+|+.+ +.+.+|
T Consensus 19 ~~i~~~~~--~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~d~ 94 (253)
T TIGR00755 19 QKIVEAAN--VLEGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDFPK 94 (253)
T ss_pred HHHHHhcC--CCCcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHcCC
Confidence 45555555 55678999999999999999999975 499999954 7766552 4689999999965 444566
Q ss_pred -EEEEcchhccCCchHHHHHHHHHHH
Q 018205 255 -AFFFKAIFHAFVDEDCLKILKRCRE 279 (359)
Q Consensus 255 -~i~~~~vl~~~~~~~~~~~L~~~~~ 279 (359)
.++.++.-++++.+ ++.++..
T Consensus 95 ~~~vvsNlPy~i~~~----il~~ll~ 116 (253)
T TIGR00755 95 QLKVVSNLPYNISSP----LIFKLLE 116 (253)
T ss_pred cceEEEcCChhhHHH----HHHHHhc
Confidence 34444444445433 4555443
No 163
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.23 E-value=3.3e-06 Score=73.97 Aligned_cols=96 Identities=17% Similarity=0.175 Sum_probs=77.2
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCCCCCceEeeCCCCC-CCC--CccEEEEcchhccCC-c
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPDTDNLKFIAGDMFQ-SIP--PADAFFFKAIFHAFV-D 267 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~~v~~~~~d~~~-~~p--~~D~i~~~~vl~~~~-~ 267 (359)
+....++|+|||.|.++.. +|.+..++.|+.. .+..++..+.......|+.. +.+ .||..+...++||+. .
T Consensus 44 ~~gsv~~d~gCGngky~~~----~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~ 119 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLGV----NPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIHHLSTR 119 (293)
T ss_pred CCcceeeecccCCcccCcC----CCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchhhhhhhhhhhH
Confidence 3478999999999987753 5888999999965 77777765554778888866 443 499999999999986 5
Q ss_pred hHHHHHHHHHHHhcccCCCCcEEEEEee
Q 018205 268 EDCLKILKRCREAIASRGDRGKVIIIDI 295 (359)
Q Consensus 268 ~~~~~~L~~~~~~L~p~~~gG~lli~~~ 295 (359)
....++++++.+.++| ||..+|.-.
T Consensus 120 ~RR~~~l~e~~r~lrp---gg~~lvyvw 144 (293)
T KOG1331|consen 120 ERRERALEELLRVLRP---GGNALVYVW 144 (293)
T ss_pred HHHHHHHHHHHHHhcC---CCceEEEEe
Confidence 5667899999999999 888776543
No 164
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.21 E-value=8.5e-06 Score=73.03 Aligned_cols=105 Identities=12% Similarity=0.159 Sum_probs=74.0
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCC-CCeEEEeeccc-ccccCCC------CCCceEeeCCCCC---CCCCccEEEEc-
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFP-GIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQ---SIPPADAFFFK- 259 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~---~~p~~D~i~~~- 259 (359)
..+..+|||+|||+|..+..+++..+ ...++++|++. +++.+++ ..++++...|... ..+.||.|++.
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA 148 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence 34568999999999999999988764 35899999954 7765542 3468888888743 12359999852
Q ss_pred -----chhc-------cCCchH-------HHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 018205 260 -----AIFH-------AFVDED-------CLKILKRCREAIASRGDRGKVIIIDIVINE 299 (359)
Q Consensus 260 -----~vl~-------~~~~~~-------~~~~L~~~~~~L~p~~~gG~lli~~~~~~~ 299 (359)
.++. .+.+++ ..++|+++.+.|+| ||.++........
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkp---gG~lvYstcs~~~ 204 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKP---GGVLVYSTCSLEP 204 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCCCh
Confidence 1121 122222 24699999999999 8988877665543
No 165
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.17 E-value=3.8e-06 Score=75.64 Aligned_cols=80 Identities=20% Similarity=0.339 Sum_probs=57.7
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC---CCCceEeeCCCCC-CCCCc--c
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD---TDNLKFIAGDMFQ-SIPPA--D 254 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~---~~~v~~~~~d~~~-~~p~~--D 254 (359)
..+++.+. ..+..+|||||||+|.++..++++.+ +++++|++ .+++.+++ .++++++.+|+.+ +.+.+ |
T Consensus 32 ~~i~~~l~--~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~ 107 (272)
T PRK00274 32 DKIVDAAG--PQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPL 107 (272)
T ss_pred HHHHHhcC--CCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcc
Confidence 34555555 55678999999999999999999965 79999995 48877653 3689999999965 33433 5
Q ss_pred EEEEcchhccCC
Q 018205 255 AFFFKAIFHAFV 266 (359)
Q Consensus 255 ~i~~~~vl~~~~ 266 (359)
.|+++ .=++.+
T Consensus 108 ~vv~N-lPY~is 118 (272)
T PRK00274 108 KVVAN-LPYNIT 118 (272)
T ss_pred eEEEe-CCccch
Confidence 55543 333343
No 166
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.16 E-value=4.7e-06 Score=71.42 Aligned_cols=100 Identities=19% Similarity=0.296 Sum_probs=78.1
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCC-CCeEEEeec-ccccccCCC-------CCCceEee-CCCCC---C--CCCccEE
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFP-GIKCTVLDL-PHVVPKVPD-------TDNLKFIA-GDMFQ---S--IPPADAF 256 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~v~~~~-~d~~~---~--~p~~D~i 256 (359)
.+++++|||||.+.|.-+..++...| +.++|.+|+ ++..+.|++ .++|+.+. +|..+ . .+.||+|
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence 45789999999999999999999998 789999999 558887772 56688888 57754 2 2359999
Q ss_pred EEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCC
Q 018205 257 FFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEK 300 (359)
Q Consensus 257 ~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~ 300 (359)
|+- ......+.++..+.++|+| |.++++|.+....
T Consensus 137 FID-----adK~~yp~~le~~~~lLr~----GGliv~DNvl~~G 171 (219)
T COG4122 137 FID-----ADKADYPEYLERALPLLRP----GGLIVADNVLFGG 171 (219)
T ss_pred EEe-----CChhhCHHHHHHHHHHhCC----CcEEEEeecccCC
Confidence 973 3334557799999999999 5577777666554
No 167
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.15 E-value=1.3e-05 Score=76.72 Aligned_cols=106 Identities=12% Similarity=0.174 Sum_probs=75.3
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeeccc-ccccCCC------CCCceEeeCCCCC-C--CC-CccEEEEc
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQ-S--IP-PADAFFFK 259 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~-~--~p-~~D~i~~~ 259 (359)
..++.+|||+|||+|..+..+++.. ++.+++++|++. +++.+++ ..++++..+|... + .+ .||.|++.
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVD 314 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence 4566899999999999999999876 457999999954 7776652 2458899999843 1 12 49999862
Q ss_pred ------chhcc-------CCch-------HHHHHHHHHHHhcccCCCCcEEEEEeeecCCC
Q 018205 260 ------AIFHA-------FVDE-------DCLKILKRCREAIASRGDRGKVIIIDIVINEK 300 (359)
Q Consensus 260 ------~vl~~-------~~~~-------~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~ 300 (359)
.++.. ++.+ ...++|.++.+.|+| ||.++.........
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp---GG~LvYsTCs~~~e 372 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEK---GGILLYSTCTVTKE 372 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEECCCChh
Confidence 22221 1111 125689999999999 88887777665433
No 168
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.14 E-value=9e-06 Score=73.14 Aligned_cols=102 Identities=14% Similarity=0.230 Sum_probs=74.2
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCC-eEEEeeccc-ccccCCC----CCCc--eEeeCCCC---CCCCCccEEEEcchh
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGI-KCTVLDLPH-VVPKVPD----TDNL--KFIAGDMF---QSIPPADAFFFKAIF 262 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~~~-~~~~a~~----~~~v--~~~~~d~~---~~~p~~D~i~~~~vl 262 (359)
.+.+|||+|+|.|..+..+.+.++.. +++++|.+. +++.++. .... .....++. .+++..|+|+++++|
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~s~~L 112 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIASYVL 112 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEEehhh
Confidence 46899999999999988888888744 799999965 7776551 1111 11111221 234457999999999
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCC
Q 018205 263 HAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEK 300 (359)
Q Consensus 263 ~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~ 300 (359)
-.+++.....+++++.+.+. +.|+|+|+..+.+
T Consensus 113 ~EL~~~~r~~lv~~LW~~~~-----~~LVlVEpGt~~G 145 (274)
T PF09243_consen 113 NELPSAARAELVRSLWNKTA-----PVLVLVEPGTPAG 145 (274)
T ss_pred hcCCchHHHHHHHHHHHhcc-----CcEEEEcCCChHH
Confidence 99988778888999888875 4899999776654
No 169
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.14 E-value=4.4e-06 Score=74.34 Aligned_cols=95 Identities=19% Similarity=0.297 Sum_probs=73.6
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCC-------CCCceEeeCCCCC-CCCC-ccEEEEcchhcc
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPD-------TDNLKFIAGDMFQ-SIPP-ADAFFFKAIFHA 264 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~d~~~-~~p~-~D~i~~~~vl~~ 264 (359)
..+.|||||||+|.++...+++. ..++.+++-++|.+.|+. .+||.++.|-+.+ ++|+ +|+|++--+-+.
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG~m 255 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAG-AKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMGYM 255 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhC-cceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccchhh
Confidence 35789999999999998888774 348999999999988872 6899999999966 6785 999997554444
Q ss_pred CCchHHHHHHHHHHHhcccCCCCcEEEE
Q 018205 265 FVDEDCLKILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 265 ~~~~~~~~~L~~~~~~L~p~~~gG~lli 292 (359)
+-++...+---..++.|+| .|.++=
T Consensus 256 L~NERMLEsYl~Ark~l~P---~GkMfP 280 (517)
T KOG1500|consen 256 LVNERMLESYLHARKWLKP---NGKMFP 280 (517)
T ss_pred hhhHHHHHHHHHHHhhcCC---CCcccC
Confidence 4455544555567799999 787653
No 170
>PLN02476 O-methyltransferase
Probab=98.14 E-value=5.1e-06 Score=74.12 Aligned_cols=99 Identities=16% Similarity=0.157 Sum_probs=74.6
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCC-CCeEEEeecc-cccccCCC-------CCCceEeeCCCCCC---C------CCc
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFP-GIKCTVLDLP-HVVPKVPD-------TDNLKFIAGDMFQS---I------PPA 253 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~-~~~~~a~~-------~~~v~~~~~d~~~~---~------p~~ 253 (359)
..++++|||||+++|..+..++...| +.+++.+|.. +..+.|++ .++++++.+|..+. + ..|
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 34689999999999999999998765 6689999994 46666652 56899999998542 1 259
Q ss_pred cEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 018205 254 DAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINE 299 (359)
Q Consensus 254 D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~ 299 (359)
|+|++-. ........+..+.+.|+| || ++++|.+...
T Consensus 196 D~VFIDa-----~K~~Y~~y~e~~l~lL~~---GG-vIV~DNvL~~ 232 (278)
T PLN02476 196 DFAFVDA-----DKRMYQDYFELLLQLVRV---GG-VIVMDNVLWH 232 (278)
T ss_pred CEEEECC-----CHHHHHHHHHHHHHhcCC---Cc-EEEEecCccC
Confidence 9998732 345567899999999999 55 5555655443
No 171
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.13 E-value=5.2e-06 Score=75.24 Aligned_cols=88 Identities=18% Similarity=0.349 Sum_probs=63.2
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCC-CCCC
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQ-SIPP 252 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~-~~p~ 252 (359)
..+++... ..+..+|||||||+|.++..+++.. .+++++|++. +++.+++ .++++++.+|+.+ +.+.
T Consensus 26 ~~Iv~~~~--~~~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~~ 101 (294)
T PTZ00338 26 DKIVEKAA--IKPTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFPY 101 (294)
T ss_pred HHHHHhcC--CCCcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcccc
Confidence 34555555 5567899999999999999999874 5799999954 7776652 4689999999976 5567
Q ss_pred ccEEEEcchhccCCchHHHHHH
Q 018205 253 ADAFFFKAIFHAFVDEDCLKIL 274 (359)
Q Consensus 253 ~D~i~~~~vl~~~~~~~~~~~L 274 (359)
+|+|++ +.-++++.+...++|
T Consensus 102 ~d~Vva-NlPY~Istpil~~ll 122 (294)
T PTZ00338 102 FDVCVA-NVPYQISSPLVFKLL 122 (294)
T ss_pred cCEEEe-cCCcccCcHHHHHHH
Confidence 898775 444445544333333
No 172
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.10 E-value=4.8e-06 Score=71.22 Aligned_cols=104 Identities=15% Similarity=0.229 Sum_probs=62.3
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCC---------------CCCCceEeeCC
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVP---------------DTDNLKFIAGD 245 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~---------------~~~~v~~~~~d 245 (359)
..+++.+. +.+...++|+|||.|......+...+--+++|+++ +...+.|+ ...++++..+|
T Consensus 32 ~~il~~~~--l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gd 109 (205)
T PF08123_consen 32 SKILDELN--LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGD 109 (205)
T ss_dssp HHHHHHTT----TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-
T ss_pred HHHHHHhC--CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccC
Confidence 35666666 67789999999999999988887775556999999 33443332 25678899999
Q ss_pred CCCC------CCCccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 018205 246 MFQS------IPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 246 ~~~~------~p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
|.+. +.++|+|++++.. |+++ ...-|.+....||+ |.+|+-.
T Consensus 110 fl~~~~~~~~~s~AdvVf~Nn~~--F~~~-l~~~L~~~~~~lk~---G~~IIs~ 157 (205)
T PF08123_consen 110 FLDPDFVKDIWSDADVVFVNNTC--FDPD-LNLALAELLLELKP---GARIIST 157 (205)
T ss_dssp TTTHHHHHHHGHC-SEEEE--TT--T-HH-HHHHHHHHHTTS-T---T-EEEES
T ss_pred ccccHhHhhhhcCCCEEEEeccc--cCHH-HHHHHHHHHhcCCC---CCEEEEC
Confidence 9762 2358999999886 4444 44556777778888 5555443
No 173
>PRK04148 hypothetical protein; Provisional
Probab=98.09 E-value=1.9e-05 Score=62.20 Aligned_cols=90 Identities=20% Similarity=0.236 Sum_probs=63.8
Q ss_pred CCCeEEEeCCCcch-HHHHHHHHCCCCeEEEeeccc-ccccCCCCCCceEeeCCCCCCCC----CccEEEEcchhccCCc
Q 018205 194 GLGSLVDVGGGTGS-FARIISEAFPGIKCTVLDLPH-VVPKVPDTDNLKFIAGDMFQSIP----PADAFFFKAIFHAFVD 267 (359)
Q Consensus 194 ~~~~vlDvG~G~G~-~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~~v~~~~~d~~~~~p----~~D~i~~~~vl~~~~~ 267 (359)
+..+|+|||||+|. ++..|++. +..++++|+++ .++.+++ ..+.++..|++++-+ ++|+|.+.+ +.
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~-~~~~~v~dDlf~p~~~~y~~a~liysir-----pp 87 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKK-LGLNAFVDDLFNPNLEIYKNAKLIYSIR-----PP 87 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHH-hCCeEEECcCCCCCHHHHhcCCEEEEeC-----CC
Confidence 45789999999996 78888765 67999999954 7776653 357999999988543 499998755 34
Q ss_pred hHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 268 EDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 268 ~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
++...-+.++.+.+. .-++|....
T Consensus 88 ~el~~~~~~la~~~~-----~~~~i~~l~ 111 (134)
T PRK04148 88 RDLQPFILELAKKIN-----VPLIIKPLS 111 (134)
T ss_pred HHHHHHHHHHHHHcC-----CCEEEEcCC
Confidence 555555555555553 456554433
No 174
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.09 E-value=7.2e-06 Score=73.45 Aligned_cols=97 Identities=16% Similarity=0.271 Sum_probs=74.6
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCCC----------CCCceEeeCCCCC---CCC-CccEEE
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVPD----------TDNLKFIAGDMFQ---SIP-PADAFF 257 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~d~~~---~~p-~~D~i~ 257 (359)
+.+++||-||+|.|.+++.+++..+-.+++.+|+ +.+++.+++ .+|++++..|..+ ..+ .||+|+
T Consensus 75 ~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi 154 (282)
T COG0421 75 PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVII 154 (282)
T ss_pred CCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEE
Confidence 3457999999999999999999888889999999 558887762 4899999999855 234 599999
Q ss_pred EcchhccCCch---HHHHHHHHHHHhcccCCCCcEEEEE
Q 018205 258 FKAIFHAFVDE---DCLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 258 ~~~vl~~~~~~---~~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
+-..=. .... -...+++.|+++|++ +|.++..
T Consensus 155 ~D~tdp-~gp~~~Lft~eFy~~~~~~L~~---~Gi~v~q 189 (282)
T COG0421 155 VDSTDP-VGPAEALFTEEFYEGCRRALKE---DGIFVAQ 189 (282)
T ss_pred EcCCCC-CCcccccCCHHHHHHHHHhcCC---CcEEEEe
Confidence 754332 1110 124699999999999 7766664
No 175
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.05 E-value=9.2e-06 Score=67.01 Aligned_cols=86 Identities=16% Similarity=0.191 Sum_probs=61.0
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCCC-----CCCceEeeCCCCCCCCCccEEEEcchhccCCc
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVPD-----TDNLKFIAGDMFQSIPPADAFFFKAIFHAFVD 267 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~~~p~~D~i~~~~vl~~~~~ 267 (359)
..++|+|+|||||.++...+-..| .+++++|+ |+.++.+++ ..++.|+..|+.+.-..+|.++++=-+--+..
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimNPPFG~~~r 123 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGA-SRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMNPPFGSQRR 123 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEECCCCccccc
Confidence 467899999999999998877654 38999999 668887763 45799999999443445898887644433321
Q ss_pred hHHHHHHHHHHHh
Q 018205 268 EDCLKILKRCREA 280 (359)
Q Consensus 268 ~~~~~~L~~~~~~ 280 (359)
..-..+|.+..++
T Consensus 124 haDr~Fl~~Ale~ 136 (198)
T COG2263 124 HADRPFLLKALEI 136 (198)
T ss_pred cCCHHHHHHHHHh
Confidence 1123466666555
No 176
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.03 E-value=5.6e-06 Score=74.74 Aligned_cols=94 Identities=16% Similarity=0.187 Sum_probs=69.1
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCC-------CCCceEeeCCCCC-CCC--CccEEEEcchhc
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPD-------TDNLKFIAGDMFQ-SIP--PADAFFFKAIFH 263 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~d~~~-~~p--~~D~i~~~~vl~ 263 (359)
+.+.|||||||+|-++...+++. -.+++++|-+++.+.|.+ .+.|++..+.+.+ .+| .+|+|++-++=+
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy 138 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGY 138 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhH
Confidence 46899999999999999999986 458999999887776662 5668999998855 444 699999876655
Q ss_pred cCC-chHHHHHHHHHHHhcccCCCCcEEE
Q 018205 264 AFV-DEDCLKILKRCREAIASRGDRGKVI 291 (359)
Q Consensus 264 ~~~-~~~~~~~L~~~~~~L~p~~~gG~ll 291 (359)
.+- +.....+|-.=-+.|+| ||.++
T Consensus 139 ~Ll~EsMldsVl~ARdkwL~~---~G~i~ 164 (346)
T KOG1499|consen 139 FLLYESMLDSVLYARDKWLKE---GGLIY 164 (346)
T ss_pred HHHHhhhhhhhhhhhhhccCC---CceEc
Confidence 432 22233344444588998 77654
No 177
>PLN02823 spermine synthase
Probab=98.01 E-value=9.5e-06 Score=74.74 Aligned_cols=96 Identities=17% Similarity=0.141 Sum_probs=70.1
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCCC----------CCCceEeeCCCCCC---C-CCccEEE
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVPD----------TDNLKFIAGDMFQS---I-PPADAFF 257 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~d~~~~---~-p~~D~i~ 257 (359)
+.+.+||.||+|.|..+..+++..+..+++++|+ +.+++.|++ .+|++++.+|.+.. . ..||+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 3568999999999999999988666678999999 558887762 47999999998552 2 2499999
Q ss_pred EcchhccCCc--h---HHHHHHH-HHHHhcccCCCCcEEEE
Q 018205 258 FKAIFHAFVD--E---DCLKILK-RCREAIASRGDRGKVII 292 (359)
Q Consensus 258 ~~~vl~~~~~--~---~~~~~L~-~~~~~L~p~~~gG~lli 292 (359)
+-. ...+.. . -...+++ .+++.|+| ||.+++
T Consensus 182 ~D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p---~Gvlv~ 218 (336)
T PLN02823 182 GDL-ADPVEGGPCYQLYTKSFYERIVKPKLNP---GGIFVT 218 (336)
T ss_pred ecC-CCccccCcchhhccHHHHHHHHHHhcCC---CcEEEE
Confidence 752 111100 0 0235787 89999999 776554
No 178
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.00 E-value=1.1e-05 Score=82.18 Aligned_cols=96 Identities=14% Similarity=0.181 Sum_probs=69.7
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------C-CCceEeeCCCCCC---CC-CccEEEEcc
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------T-DNLKFIAGDMFQS---IP-PADAFFFKA 260 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~-~~v~~~~~d~~~~---~p-~~D~i~~~~ 260 (359)
+..+|||+|||+|.++..++... ..+++++|++. +++.|++ . ++++++++|+++. .+ .||+|++.-
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~G-a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGG-AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 46899999999999999999862 34799999965 8887762 2 4799999998652 22 599999841
Q ss_pred hh--------ccC-CchHHHHHHHHHHHhcccCCCCcEEEEE
Q 018205 261 IF--------HAF-VDEDCLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 261 vl--------~~~-~~~~~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
=- ..+ .......+++.+.++|+| ||.+++.
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~---gG~l~~~ 655 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRP---GGTLYFS 655 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCC---CCEEEEE
Confidence 10 000 012345689999999999 8877664
No 179
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=97.99 E-value=1.5e-05 Score=68.04 Aligned_cols=96 Identities=13% Similarity=0.223 Sum_probs=63.1
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC------CCCceEeeCCCCCCC---C-CccEEEEcchh
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD------TDNLKFIAGDMFQSI---P-PADAFFFKAIF 262 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~------~~~v~~~~~d~~~~~---p-~~D~i~~~~vl 262 (359)
...+|||+|||+|.++..++.+. ..+++++|.. .+++.++. ..+++++.+|+++.+ . .||+|++.=-+
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence 45799999999999998765554 3589999994 46665552 347899999985522 1 39999986443
Q ss_pred ccCCchHHHHHHHHHHH--hcccCCCCcEEEEEeeec
Q 018205 263 HAFVDEDCLKILKRCRE--AIASRGDRGKVIIIDIVI 297 (359)
Q Consensus 263 ~~~~~~~~~~~L~~~~~--~L~p~~~gG~lli~~~~~ 297 (359)
+. .-...+++.+.+ +|+| ++ +++++...
T Consensus 132 ~~---g~~~~~l~~l~~~~~l~~---~~-iv~ve~~~ 161 (199)
T PRK10909 132 RK---GLLEETINLLEDNGWLAD---EA-LIYVESEV 161 (199)
T ss_pred CC---ChHHHHHHHHHHCCCcCC---Cc-EEEEEecC
Confidence 21 122345555554 3677 45 55555443
No 180
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=97.94 E-value=3e-05 Score=73.30 Aligned_cols=98 Identities=11% Similarity=0.095 Sum_probs=68.5
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------C--CCceEeeCCCCCCC-------CCccEEE
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------T--DNLKFIAGDMFQSI-------PPADAFF 257 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~--~~v~~~~~d~~~~~-------p~~D~i~ 257 (359)
+..+|||+|||+|.++...+.. ...+++++|++. +++.|++ . ++++++.+|+++.. ..||+|+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 4689999999999998876643 345899999965 8777662 1 47899999996521 2499999
Q ss_pred EcchhccCCc-------hHHHHHHHHHHHhcccCCCCcEEEEEee
Q 018205 258 FKAIFHAFVD-------EDCLKILKRCREAIASRGDRGKVIIIDI 295 (359)
Q Consensus 258 ~~~vl~~~~~-------~~~~~~L~~~~~~L~p~~~gG~lli~~~ 295 (359)
+.--...-+. .....+++.+.++|+| ||.++.+..
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~---gG~lv~~sc 340 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNP---GGILLTFSC 340 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCC---CeEEEEEeC
Confidence 7622110111 1234567778899999 888887663
No 181
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.92 E-value=4.4e-05 Score=66.25 Aligned_cols=96 Identities=18% Similarity=0.270 Sum_probs=69.5
Q ss_pred CeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCC------CCCCceEeeCCCCC---C-CC--CccEEEEcchh
Q 018205 196 GSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVP------DTDNLKFIAGDMFQ---S-IP--PADAFFFKAIF 262 (359)
Q Consensus 196 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~------~~~~v~~~~~d~~~---~-~p--~~D~i~~~~vl 262 (359)
..+||||||.|.++..+|+++|+..++|+|+. ..+..|- .-+++.++++|... . ++ +.|-|.+++-=
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 58999999999999999999999999999993 3443332 23389999999843 2 22 36666654321
Q ss_pred ccCCchH-------HHHHHHHHHHhcccCCCCcEEEEEee
Q 018205 263 HAFVDED-------CLKILKRCREAIASRGDRGKVIIIDI 295 (359)
Q Consensus 263 ~~~~~~~-------~~~~L~~~~~~L~p~~~gG~lli~~~ 295 (359)
.|+... ...+|+.+.+.|+| ||.|.+.+-
T Consensus 130 -PWpKkRH~KRRl~~~~fl~~~a~~Lk~---gG~l~~aTD 165 (227)
T COG0220 130 -PWPKKRHHKRRLTQPEFLKLYARKLKP---GGVLHFATD 165 (227)
T ss_pred -CCCCccccccccCCHHHHHHHHHHccC---CCEEEEEec
Confidence 232111 24689999999999 899988663
No 182
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.91 E-value=2.2e-05 Score=68.21 Aligned_cols=73 Identities=25% Similarity=0.525 Sum_probs=60.1
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCC-------CCCCceEeeCCCCC-CCCC
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVP-------DTDNLKFIAGDMFQ-SIPP 252 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-------~~~~v~~~~~d~~~-~~p~ 252 (359)
+.++.+-+ ..+...|||||.|||.++..++++ +.+|+++++ |.|+.... ...+++++.+|++. ++|.
T Consensus 48 ~~I~~ka~--~k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P~ 123 (315)
T KOG0820|consen 48 DQIVEKAD--LKPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLPR 123 (315)
T ss_pred HHHHhccC--CCCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCcc
Confidence 56666666 778899999999999999999999 667999999 55665543 25789999999987 7898
Q ss_pred ccEEEE
Q 018205 253 ADAFFF 258 (359)
Q Consensus 253 ~D~i~~ 258 (359)
||+++.
T Consensus 124 fd~cVs 129 (315)
T KOG0820|consen 124 FDGCVS 129 (315)
T ss_pred cceeec
Confidence 998886
No 183
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.90 E-value=9.7e-05 Score=62.87 Aligned_cols=127 Identities=16% Similarity=0.124 Sum_probs=89.5
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCC-eEEEeec-ccccccCCC--------CCCceEeeCCCCC---CCC--CccEE
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGI-KCTVLDL-PHVVPKVPD--------TDNLKFIAGDMFQ---SIP--PADAF 256 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~--------~~~v~~~~~d~~~---~~p--~~D~i 256 (359)
.+...+|||...|-|.+++..+++ ++ .++-++- |.+++.|.- ..+++++.||..+ .++ +||+|
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~r--GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaI 209 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALER--GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAI 209 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHc--CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceE
Confidence 356799999999999999999988 55 7888888 669988872 3478999999965 344 39988
Q ss_pred EE-----cchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHH
Q 018205 257 FF-----KAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEW 331 (359)
Q Consensus 257 ~~-----~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~ 331 (359)
+- +..=+- -..++-++++++|+| ||+++-.... .... +.... -....
T Consensus 210 iHDPPRfS~AgeL----YseefY~El~RiLkr---gGrlFHYvG~--Pg~r---------yrG~d----------~~~gV 261 (287)
T COG2521 210 IHDPPRFSLAGEL----YSEEFYRELYRILKR---GGRLFHYVGN--PGKR---------YRGLD----------LPKGV 261 (287)
T ss_pred eeCCCccchhhhH----hHHHHHHHHHHHcCc---CCcEEEEeCC--CCcc---------cccCC----------hhHHH
Confidence 72 222222 235689999999999 8998754322 1110 11111 24668
Q ss_pred HHHHHHcCCceeEEEEe
Q 018205 332 EKLFLDAGFSHFKITPV 348 (359)
Q Consensus 332 ~~ll~~aGf~~~~~~~~ 348 (359)
.+.|+++||..++...-
T Consensus 262 a~RLr~vGF~~v~~~~~ 278 (287)
T COG2521 262 AERLRRVGFEVVKKVRE 278 (287)
T ss_pred HHHHHhcCceeeeeehh
Confidence 89999999997766544
No 184
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.90 E-value=2.6e-05 Score=68.70 Aligned_cols=98 Identities=17% Similarity=0.151 Sum_probs=73.8
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeec-ccccccCC-------CCCCceEeeCCCCCC---C-------CCc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDL-PHVVPKVP-------DTDNLKFIAGDMFQS---I-------PPA 253 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~-------~~~~v~~~~~d~~~~---~-------p~~ 253 (359)
.++.+|||||+++|.-+..+++.. ++.+++.+|. ++..+.|+ -.++|+++.+|..+. + ..|
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~f 157 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTF 157 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcc
Confidence 357899999999999999999876 4779999999 44666665 258999999988541 1 359
Q ss_pred cEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 018205 254 DAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINE 299 (359)
Q Consensus 254 D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~ 299 (359)
|+|++-. ........+..+.+.|+| |.++|+|.+...
T Consensus 158 D~iFiDa-----dK~~Y~~y~~~~l~ll~~----GGviv~DNvl~~ 194 (247)
T PLN02589 158 DFIFVDA-----DKDNYINYHKRLIDLVKV----GGVIGYDNTLWN 194 (247)
T ss_pred cEEEecC-----CHHHhHHHHHHHHHhcCC----CeEEEEcCCCCC
Confidence 9999743 234456788899999999 456666766544
No 185
>PRK00536 speE spermidine synthase; Provisional
Probab=97.88 E-value=5.1e-05 Score=67.24 Aligned_cols=87 Identities=9% Similarity=0.088 Sum_probs=66.3
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC----------CCCceEeeCCCCCCC-CCccEEEEcc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD----------TDNLKFIAGDMFQSI-PPADAFFFKA 260 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~----------~~~v~~~~~d~~~~~-p~~D~i~~~~ 260 (359)
+.+++||=||||.|..++.+++. |. +++.+|+.+ +++.+++ .+|++++.. +.+.. ..||+|++-.
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~~~~~fDVIIvDs 147 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDLDIKKYDLIICLQ 147 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhccCCcCCEEEEcC
Confidence 56799999999999999999985 44 999999954 8877663 688888862 32222 3599999754
Q ss_pred hhccCCchHHHHHHHHHHHhcccCCCCcEEEE
Q 018205 261 IFHAFVDEDCLKILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 261 vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli 292 (359)
. + + ..+.+.++++|+| ||.++.
T Consensus 148 ~---~--~--~~fy~~~~~~L~~---~Gi~v~ 169 (262)
T PRK00536 148 E---P--D--IHKIDGLKRMLKE---DGVFIS 169 (262)
T ss_pred C---C--C--hHHHHHHHHhcCC---CcEEEE
Confidence 3 1 2 3588999999999 776665
No 186
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.85 E-value=1.7e-05 Score=70.21 Aligned_cols=99 Identities=18% Similarity=0.273 Sum_probs=70.9
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCCC----------CCCceEeeCCCCC---C-CC-CccEE
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVPD----------TDNLKFIAGDMFQ---S-IP-PADAF 256 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~d~~~---~-~p-~~D~i 256 (359)
+.+.+||-||+|.|..+..+++..+-.+++++|+ +.+++.+++ .+|++++.+|... . .. .||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 3679999999999999999987665679999999 458887762 5799999999843 2 33 59999
Q ss_pred EEcchhccCCchH--HHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 257 FFKAIFHAFVDED--CLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 257 ~~~~vl~~~~~~~--~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
+.-..-...+... ...+++.+++.|+| +|.+++..
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~---~Gv~v~~~ 191 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKP---DGVLVLQA 191 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEE---EEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCC---CcEEEEEc
Confidence 9733221111111 24699999999999 77666644
No 187
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=2.3e-05 Score=65.50 Aligned_cols=99 Identities=19% Similarity=0.300 Sum_probs=70.6
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHC--CCCeEEEeec-ccccccCC----------------CCCCceEee
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAF--PGIKCTVLDL-PHVVPKVP----------------DTDNLKFIA 243 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~----------------~~~~v~~~~ 243 (359)
.+++.+...+.+..++||||+|+|.++..++.-. ++...+|+|. |+.++.++ +..++.++.
T Consensus 71 ~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivv 150 (237)
T KOG1661|consen 71 TALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVV 150 (237)
T ss_pred HHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEe
Confidence 3344444345677899999999999998887543 4445589998 77776554 156889999
Q ss_pred CCCCCC---CCCccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEE
Q 018205 244 GDMFQS---IPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 244 ~d~~~~---~p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli 292 (359)
+|...- ...||.|.+.-.- .++.+++...|++ ||+++|
T Consensus 151 GDgr~g~~e~a~YDaIhvGAaa--------~~~pq~l~dqL~~---gGrlli 191 (237)
T KOG1661|consen 151 GDGRKGYAEQAPYDAIHVGAAA--------SELPQELLDQLKP---GGRLLI 191 (237)
T ss_pred CCccccCCccCCcceEEEccCc--------cccHHHHHHhhcc---CCeEEE
Confidence 998652 3359999987332 3356667777888 888888
No 188
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.84 E-value=2.9e-06 Score=70.52 Aligned_cols=148 Identities=16% Similarity=0.207 Sum_probs=88.0
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCCCCCceEeeCC-CCCCCCCccEEEEcchhccCCchHH
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPDTDNLKFIAGD-MFQSIPPADAFFFKAIFHAFVDEDC 270 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~~v~~~~~d-~~~~~p~~D~i~~~~vl~~~~~~~~ 270 (359)
..+.++||+|+|.|..+...+..+.. +.+.+++. |....+. .+..+.... -.+.--++|+|.|.++|...-++
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~fee--vyATElS~tMr~rL~k-k~ynVl~~~ew~~t~~k~dli~clNlLDRc~~p-- 185 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPTFEE--VYATELSWTMRDRLKK-KNYNVLTEIEWLQTDVKLDLILCLNLLDRCFDP-- 185 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcchHHH--HHHHHhhHHHHHHHhh-cCCceeeehhhhhcCceeehHHHHHHHHhhcCh--
Confidence 34689999999999999888766543 77778876 6555442 122222211 11111149999999999887555
Q ss_pred HHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccC--HHHHHHHHHHcCCceeEEEEe
Q 018205 271 LKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERT--EKEWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 271 ~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t--~~~~~~ll~~aGf~~~~~~~~ 348 (359)
-++|+.++.+|.|. .|++++.=.. +...--. ...........-....+|+.+. ...+.++|+.|||.+...+..
T Consensus 186 ~kLL~Di~~vl~ps--ngrvivaLVL-P~~hYVE-~N~~g~~~rPdn~Le~~Gr~~ee~v~~~~e~lr~~g~~veawTrl 261 (288)
T KOG3987|consen 186 FKLLEDIHLVLAPS--NGRVIVALVL-PYMHYVE-TNTSGLPLRPDNLLENNGRSFEEEVARFMELLRNCGYRVEAWTRL 261 (288)
T ss_pred HHHHHHHHHHhccC--CCcEEEEEEe-cccceee-cCCCCCcCCchHHHHhcCccHHHHHHHHHHHHHhcCchhhhhhcC
Confidence 56999999999992 6777764322 2111000 0000000000011123444332 345789999999999888776
Q ss_pred C
Q 018205 349 Y 349 (359)
Q Consensus 349 ~ 349 (359)
+
T Consensus 262 P 262 (288)
T KOG3987|consen 262 P 262 (288)
T ss_pred C
Confidence 5
No 189
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=97.82 E-value=4.2e-05 Score=70.41 Aligned_cols=64 Identities=20% Similarity=0.228 Sum_probs=50.7
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCCC---C-CCccEEEEc
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQS---I-PPADAFFFK 259 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~~---~-p~~D~i~~~ 259 (359)
+..+|||+|||+|.++..+++. +.+++++|++. +++.|++ ..+++++.+|+.+. . ..||+|++.
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d 247 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN 247 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence 3589999999999999999985 56899999954 8877762 35789999998541 2 248999975
No 190
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.80 E-value=0.00045 Score=61.30 Aligned_cols=134 Identities=16% Similarity=0.175 Sum_probs=93.5
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-cc-------cc---CC----------------------------
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VV-------PK---VP---------------------------- 234 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~-------~~---a~---------------------------- 234 (359)
...+||-=|||.|.++-.++.. +..+.+.|.+- |+ .. ..
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 4579999999999999999998 66788888865 42 11 11
Q ss_pred --------CCCCceEeeCCCCC--CCC----CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCC
Q 018205 235 --------DTDNLKFIAGDMFQ--SIP----PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEK 300 (359)
Q Consensus 235 --------~~~~v~~~~~d~~~--~~p----~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~ 300 (359)
...++....|||.+ ..+ .+|+|+.++.+.-. +.+...|+.|.++||| ||.+|=+.+.....
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA--~Ni~~Yi~tI~~lLkp---gG~WIN~GPLlyh~ 208 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTA--ENIIEYIETIEHLLKP---GGYWINFGPLLYHF 208 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeech--HHHHHHHHHHHHHhcc---CCEEEecCCccccC
Confidence 03478889999965 222 49999988776543 4567899999999999 77544444333222
Q ss_pred CcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCceeEEEE
Q 018205 301 KEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITP 347 (359)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~~~~ 347 (359)
.. .. ......-++|.+|+..+.+..||++++...
T Consensus 209 ~~------------~~-~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 209 EP------------MS-IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CC------------CC-CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 11 00 000112467999999999999999877665
No 191
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.79 E-value=0.0012 Score=60.24 Aligned_cols=96 Identities=15% Similarity=0.225 Sum_probs=72.7
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCCCCCceEeeCCCCCCCC---CccEEEEcchhccCCch
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPDTDNLKFIAGDMFQSIP---PADAFFFKAIFHAFVDE 268 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~p---~~D~i~~~~vl~~~~~~ 268 (359)
+.+..++||+||++|.++..++++ +.+|+++|...+-......++|+...+|.+...| .+|+++|-.+-. +
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve~----P 282 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVEK----P 282 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecccC----H
Confidence 356789999999999999999998 6799999987666666678999999999876433 389999866632 2
Q ss_pred HHHHHHHHHHHhcccCCCC-cEEEEEeeecC
Q 018205 269 DCLKILKRCREAIASRGDR-GKVIIIDIVIN 298 (359)
Q Consensus 269 ~~~~~L~~~~~~L~p~~~g-G~lli~~~~~~ 298 (359)
.++++-+.++|.. | .+-.|+..-++
T Consensus 283 --~rva~lm~~Wl~~---g~cr~aIfnLKlp 308 (357)
T PRK11760 283 --ARVAELMAQWLVN---GWCREAIFNLKLP 308 (357)
T ss_pred --HHHHHHHHHHHhc---CcccEEEEEEEcC
Confidence 3477888888876 2 33455554443
No 192
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.73 E-value=0.00012 Score=62.70 Aligned_cols=124 Identities=17% Similarity=0.222 Sum_probs=84.5
Q ss_pred EEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCC-------CCCCceEeeCCCCCCCC--C-ccEEEEcchhccCC
Q 018205 198 LVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVP-------DTDNLKFIAGDMFQSIP--P-ADAFFFKAIFHAFV 266 (359)
Q Consensus 198 vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~-------~~~~v~~~~~d~~~~~p--~-~D~i~~~~vl~~~~ 266 (359)
|+||||.+|.+...|+++..--++++.|+. ..++.|+ ..+++++..+|-++.++ + .|+|++..+=
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMG---- 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMG---- 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-----
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCC----
Confidence 689999999999999999876689999994 4777666 26789999999877544 3 8888876653
Q ss_pred chHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCceeEEE
Q 018205 267 DEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKIT 346 (359)
Q Consensus 267 ~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~~~ 346 (359)
-....++|.+....++. ...+++ .+. .....++++|.+.||.+.+-.
T Consensus 77 G~lI~~ILe~~~~~~~~---~~~lIL-qP~-----------------------------~~~~~LR~~L~~~gf~I~~E~ 123 (205)
T PF04816_consen 77 GELIIEILEAGPEKLSS---AKRLIL-QPN-----------------------------THAYELRRWLYENGFEIIDED 123 (205)
T ss_dssp HHHHHHHHHHTGGGGTT-----EEEE-EES-----------------------------S-HHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHhhHHHhcc---CCeEEE-eCC-----------------------------CChHHHHHHHHHCCCEEEEeE
Confidence 34566788888777765 344444 211 134568899999999987765
Q ss_pred Ee---CCceeEEEEe
Q 018205 347 PV---YGIKSLIEVY 358 (359)
Q Consensus 347 ~~---~~~~~vi~~~ 358 (359)
-+ +-++.+|.+.
T Consensus 124 lv~e~~~~YeIi~~~ 138 (205)
T PF04816_consen 124 LVEENGRFYEIIVAE 138 (205)
T ss_dssp EEEETTEEEEEEEEE
T ss_pred EEeECCEEEEEEEEE
Confidence 54 3456677664
No 193
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.72 E-value=0.00013 Score=70.37 Aligned_cols=90 Identities=19% Similarity=0.298 Sum_probs=62.4
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC------CCCceEeeCCCCCC-----C-C-CccEEE
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD------TDNLKFIAGDMFQS-----I-P-PADAFF 257 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~------~~~v~~~~~d~~~~-----~-p-~~D~i~ 257 (359)
..+..+|||+|||+|.++..+++.. .+++++|++ .+++.|+. ..+++++.+|+.+. . . .||+|+
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi 367 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLL 367 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEE
Confidence 4556899999999999999999874 479999995 48877762 35799999998431 1 1 389988
Q ss_pred EcchhccCCchH-HHHHHHHHHHhcccCCCCcEEEE
Q 018205 258 FKAIFHAFVDED-CLKILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 258 ~~~vl~~~~~~~-~~~~L~~~~~~L~p~~~gG~lli 292 (359)
+.- +... ...+++.+.+ ++| ++.+++
T Consensus 368 ~dP-----Pr~G~~~~~l~~l~~-l~~---~~ivyv 394 (431)
T TIGR00479 368 LDP-----PRKGCAAEVLRTIIE-LKP---ERIVYV 394 (431)
T ss_pred ECc-----CCCCCCHHHHHHHHh-cCC---CEEEEE
Confidence 632 1111 1346666554 777 565554
No 194
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.72 E-value=0.00057 Score=56.02 Aligned_cols=121 Identities=15% Similarity=0.331 Sum_probs=80.0
Q ss_pred CCeEEEeCCCcchHHHHHHHHC-CCCeEEEeec-ccccccCC-----CCCCceEeeCCCCCCC--CCccEEEEcchhcc-
Q 018205 195 LGSLVDVGGGTGSFARIISEAF-PGIKCTVLDL-PHVVPKVP-----DTDNLKFIAGDMFQSI--PPADAFFFKAIFHA- 264 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~-----~~~~v~~~~~d~~~~~--p~~D~i~~~~vl~~- 264 (359)
+.-++|||||+|..+..|++.. |+.-+...|+ |+.++... ..-++..+..|+...+ .+.|+++++--.--
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfNPPYVpt 123 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFNPPYVPT 123 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEECCCcCcC
Confidence 6789999999999999888864 7788999999 55555432 2445678888886532 35888776532211
Q ss_pred -------------CC-----chHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCccc
Q 018205 265 -------------FV-----DEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSER 326 (359)
Q Consensus 265 -------------~~-----~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 326 (359)
|. .+-..++|.++-.+|.| .|.+++.-...+
T Consensus 124 ~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp---~Gv~Ylv~~~~N---------------------------- 172 (209)
T KOG3191|consen 124 SDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSP---RGVFYLVALRAN---------------------------- 172 (209)
T ss_pred CcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCc---CceEEeeehhhc----------------------------
Confidence 11 12234677777788888 788777543322
Q ss_pred CHHHHHHHHHHcCCceeEEE
Q 018205 327 TEKEWEKLFLDAGFSHFKIT 346 (359)
Q Consensus 327 t~~~~~~ll~~aGf~~~~~~ 346 (359)
..+++-++++.-||......
T Consensus 173 ~p~ei~k~l~~~g~~~~~~~ 192 (209)
T KOG3191|consen 173 KPKEILKILEKKGYGVRIAM 192 (209)
T ss_pred CHHHHHHHHhhcccceeEEE
Confidence 24556667777787754443
No 195
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.71 E-value=0.00049 Score=58.23 Aligned_cols=110 Identities=16% Similarity=0.241 Sum_probs=76.7
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCC-CCeEEEeecccccccCCCCCCceEeeCCCCCC---------CC
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFP-GIKCTVLDLPHVVPKVPDTDNLKFIAGDMFQS---------IP 251 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~---------~p 251 (359)
.++.+++. .+++..+|+|+|+..|.++..+++... +.+++++|+-++-.. .+|.++++|++++ ++
T Consensus 34 ~el~~k~~-i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~----~~V~~iq~d~~~~~~~~~l~~~l~ 108 (205)
T COG0293 34 LELNEKFK-LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI----PGVIFLQGDITDEDTLEKLLEALG 108 (205)
T ss_pred HHHHHhcC-eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccC----CCceEEeeeccCccHHHHHHHHcC
Confidence 67777774 678899999999999999999888764 456999999665443 3499999999753 12
Q ss_pred C--ccEEEEcch---hccCC-c-----hHHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 018205 252 P--ADAFFFKAI---FHAFV-D-----EDCLKILKRCREAIASRGDRGKVIIIDIVINE 299 (359)
Q Consensus 252 ~--~D~i~~~~v---l~~~~-~-----~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~ 299 (359)
. +|+|++-.. --++. | .-+...+.-+.+.|+| ||.+++-.....+
T Consensus 109 ~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~---~G~fv~K~fqg~~ 164 (205)
T COG0293 109 GAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKP---GGSFVAKVFQGED 164 (205)
T ss_pred CCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCC---CCeEEEEEEeCCC
Confidence 2 699985322 11111 1 2233456777789999 8888776655443
No 196
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.64 E-value=7.7e-05 Score=62.87 Aligned_cols=105 Identities=20% Similarity=0.256 Sum_probs=63.4
Q ss_pred HHHHHhcccccC--CCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeecccccccCCCCCCceEeeCCCCCC---------
Q 018205 182 NLIVKDCQPIFQ--GLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDLPHVVPKVPDTDNLKFIAGDMFQS--------- 249 (359)
Q Consensus 182 ~~~~~~~~~~~~--~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~--------- 249 (359)
.++.+.++ .++ +..++||+||++|.++..++++. +..+++++|+..+-. ...+..+.+|+.++
T Consensus 10 ~ei~~~~~-~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~----~~~~~~i~~d~~~~~~~~~i~~~ 84 (181)
T PF01728_consen 10 YEIDEKFK-IFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDP----LQNVSFIQGDITNPENIKDIRKL 84 (181)
T ss_dssp HHHHHTTS-SS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-----TTEEBTTGGGEEEEHSHHGGGS
T ss_pred HHHHHHCC-CCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccccc----ccceeeeecccchhhHHHhhhhh
Confidence 45666666 233 45899999999999999999987 667999999955411 13455555555321
Q ss_pred C----CCccEEEEcchhccCC---------chHHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 250 I----PPADAFFFKAIFHAFV---------DEDCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 250 ~----p~~D~i~~~~vl~~~~---------~~~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
. ..+|+|++-.....-. -+-+...|.-+.+.|+| ||.+++--
T Consensus 85 ~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~---gG~~v~K~ 139 (181)
T PF01728_consen 85 LPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKP---GGTFVIKV 139 (181)
T ss_dssp HGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCT---TEEEEEEE
T ss_pred ccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcC---CCEEEEEe
Confidence 1 2499999765221111 12223445555677899 78766644
No 197
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.59 E-value=9.7e-05 Score=64.35 Aligned_cols=67 Identities=16% Similarity=0.303 Sum_probs=52.2
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC-------CCCCceEeeCCC----CCCCC----CccEE
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP-------DTDNLKFIAGDM----FQSIP----PADAF 256 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~-------~~~~v~~~~~d~----~~~~p----~~D~i 256 (359)
.....|||+|||+|..+..+++..|.+.++++|.+. ++..|. ..+++.++..++ +.+.+ .+|++
T Consensus 147 ~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dll 226 (328)
T KOG2904|consen 147 SKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLL 226 (328)
T ss_pred cccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEE
Confidence 445689999999999999999999999999999976 665554 267888886555 33332 38888
Q ss_pred EEc
Q 018205 257 FFK 259 (359)
Q Consensus 257 ~~~ 259 (359)
+++
T Consensus 227 vsN 229 (328)
T KOG2904|consen 227 VSN 229 (328)
T ss_pred ecC
Confidence 875
No 198
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.58 E-value=9.4e-05 Score=62.16 Aligned_cols=89 Identities=19% Similarity=0.296 Sum_probs=67.2
Q ss_pred eEEEeCCCcchHHHHHHHHCCCCeEEEeeccc----ccccCC---CCCCceEeeCCCCC-CC-CCccEEEEcchhccCCc
Q 018205 197 SLVDVGGGTGSFARIISEAFPGIKCTVLDLPH----VVPKVP---DTDNLKFIAGDMFQ-SI-PPADAFFFKAIFHAFVD 267 (359)
Q Consensus 197 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~----~~~~a~---~~~~v~~~~~d~~~-~~-p~~D~i~~~~vl~~~~~ 267 (359)
+++|||+|.|.=++-++-.+|+.+++.+|... .++.+. .-++++++++.+.+ .. ..||+|++.-+-.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~~---- 126 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVAP---- 126 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSSS----
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhcC----
Confidence 89999999999999999999999999999832 444333 35689999999855 23 3599999987641
Q ss_pred hHHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 268 EDCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 268 ~~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
...++.-+...+++ ||.++..-
T Consensus 127 --l~~l~~~~~~~l~~---~G~~l~~K 148 (184)
T PF02527_consen 127 --LDKLLELARPLLKP---GGRLLAYK 148 (184)
T ss_dssp --HHHHHHHHGGGEEE---EEEEEEEE
T ss_pred --HHHHHHHHHHhcCC---CCEEEEEc
Confidence 24588888899999 88888754
No 199
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.58 E-value=8.5e-05 Score=67.03 Aligned_cols=76 Identities=18% Similarity=0.298 Sum_probs=59.5
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCC-CCeEEEeec-ccccccCCC----CCCceEeeCCCCC--C-C--
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFP-GIKCTVLDL-PHVVPKVPD----TDNLKFIAGDMFQ--S-I-- 250 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~--~-~-- 250 (359)
+.+++.+. ..+...+||.+||.|.++..+++..| +.+++++|. +++++.|++ .++++++.+|+.+ . .
T Consensus 9 ~Evl~~L~--~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~~ 86 (296)
T PRK00050 9 DEVVDALA--IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLAE 86 (296)
T ss_pred HHHHHhhC--CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHHc
Confidence 67777776 45567999999999999999999986 789999999 558877763 3689999999843 1 1
Q ss_pred --CCccEEEEc
Q 018205 251 --PPADAFFFK 259 (359)
Q Consensus 251 --p~~D~i~~~ 259 (359)
+.+|.|++.
T Consensus 87 ~~~~vDgIl~D 97 (296)
T PRK00050 87 GLGKVDGILLD 97 (296)
T ss_pred CCCccCEEEEC
Confidence 248887753
No 200
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.58 E-value=0.00018 Score=70.38 Aligned_cols=97 Identities=12% Similarity=0.194 Sum_probs=70.2
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccC-C-----CCCCceEeeCCCC---CCCC--CccEEEEcch
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKV-P-----DTDNLKFIAGDMF---QSIP--PADAFFFKAI 261 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a-~-----~~~~v~~~~~d~~---~~~p--~~D~i~~~~v 261 (359)
....+||||||.|.++..+++.+|+..++|+|+.. .+..+ + ...++.+++.|+. ..+| ..|-|++++-
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 46789999999999999999999999999999943 33322 2 2457788888762 2344 3787776543
Q ss_pred hccCCch-------HHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 262 FHAFVDE-------DCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 262 l~~~~~~-------~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
= .|+.. -...+|+.+.+.|+| ||.+.+.+
T Consensus 427 D-PWpKkrh~krRl~~~~fl~~~~~~Lk~---gG~i~~~T 462 (506)
T PRK01544 427 D-PWIKNKQKKKRIFNKERLKILQDKLKD---NGNLVFAS 462 (506)
T ss_pred C-CCCCCCCccccccCHHHHHHHHHhcCC---CCEEEEEc
Confidence 2 23211 124799999999999 89988855
No 201
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.57 E-value=7.1e-05 Score=70.84 Aligned_cols=98 Identities=15% Similarity=0.221 Sum_probs=65.4
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec---c-cccccCCCCCCceEeeCCC---CCCCCC--ccEEEEcchhcc
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL---P-HVVPKVPDTDNLKFIAGDM---FQSIPP--ADAFFFKAIFHA 264 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~---~-~~~~~a~~~~~v~~~~~d~---~~~~p~--~D~i~~~~vl~~ 264 (359)
....+||||||+|.++..++++ ++..+.+-+ . ..++.|-+ ..+-.+-+-+ .-++|. ||+|.|+.++..
T Consensus 117 ~iR~~LDvGcG~aSF~a~l~~r--~V~t~s~a~~d~~~~qvqfale-RGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~ 193 (506)
T PF03141_consen 117 GIRTALDVGCGVASFGAYLLER--NVTTMSFAPNDEHEAQVQFALE-RGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIP 193 (506)
T ss_pred ceEEEEeccceeehhHHHHhhC--CceEEEcccccCCchhhhhhhh-cCcchhhhhhccccccCCccchhhhhccccccc
Confidence 3467999999999999999988 443333322 1 13333322 1122222222 115564 999999999999
Q ss_pred CCchHHHHHHHHHHHhcccCCCCcEEEEEeeecC
Q 018205 265 FVDEDCLKILKRCREAIASRGDRGKVIIIDIVIN 298 (359)
Q Consensus 265 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~ 298 (359)
|...+- .+|-++.++|+| ||.++...+...
T Consensus 194 W~~~~g-~~l~evdRvLRp---GGyfv~S~ppv~ 223 (506)
T PF03141_consen 194 WHPNDG-FLLFEVDRVLRP---GGYFVLSGPPVY 223 (506)
T ss_pred chhccc-ceeehhhhhhcc---CceEEecCCccc
Confidence 976543 489999999999 888877766555
No 202
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=97.56 E-value=0.00041 Score=59.54 Aligned_cols=98 Identities=17% Similarity=0.364 Sum_probs=73.0
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCC----CeEEEeeccc-cccc-CC----CCCC--ceEeeCCCCC---CCCC---cc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPG----IKCTVLDLPH-VVPK-VP----DTDN--LKFIAGDMFQ---SIPP---AD 254 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~----~~~~~~D~~~-~~~~-a~----~~~~--v~~~~~d~~~---~~p~---~D 254 (359)
.+..+++|+|+|+..-+..|...+.. ++++-+|++. +++. |+ +.+. +.-+++|+.. ..|. -=
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl 156 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRL 156 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEE
Confidence 45789999999999988888777755 6899999976 4432 22 3444 4555677733 3443 22
Q ss_pred EEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 018205 255 AFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 255 ~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
.++....|-+++++++..+|.++..+|+| |-.+++-
T Consensus 157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~p---Gd~~LlG 192 (321)
T COG4301 157 FVFLGSTLGNLTPGECAVFLTQLRGALRP---GDYFLLG 192 (321)
T ss_pred EEEecccccCCChHHHHHHHHHHHhcCCC---cceEEEe
Confidence 45677889999999999999999999999 7777763
No 203
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.55 E-value=0.00026 Score=62.34 Aligned_cols=82 Identities=17% Similarity=0.315 Sum_probs=58.8
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC----CCCCceEeeCCCCC-CCCC---
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP----DTDNLKFIAGDMFQ-SIPP--- 252 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~----~~~~v~~~~~d~~~-~~p~--- 252 (359)
+.+++..+ ..+..+|+|||+|.|.++..|+++. .+++++++.. +++..+ ..++++++.+|++. +++.
T Consensus 20 ~kIv~~a~--~~~~d~VlEIGpG~GaLT~~Ll~~~--~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~ 95 (259)
T COG0030 20 DKIVEAAN--ISPGDNVLEIGPGLGALTEPLLERA--ARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQ 95 (259)
T ss_pred HHHHHhcC--CCCCCeEEEECCCCCHHHHHHHhhc--CeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhcC
Confidence 45666665 5557899999999999999999994 4588888844 555443 36899999999977 5663
Q ss_pred ccEEEEcchhccCCch
Q 018205 253 ADAFFFKAIFHAFVDE 268 (359)
Q Consensus 253 ~D~i~~~~vl~~~~~~ 268 (359)
++.|+. |.=++++-+
T Consensus 96 ~~~vVa-NlPY~Issp 110 (259)
T COG0030 96 PYKVVA-NLPYNISSP 110 (259)
T ss_pred CCEEEE-cCCCcccHH
Confidence 455543 444455444
No 204
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.50 E-value=0.00014 Score=61.76 Aligned_cols=96 Identities=10% Similarity=0.190 Sum_probs=62.6
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCCC---C---C-CccEEEE
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQS---I---P-PADAFFF 258 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~~---~---p-~~D~i~~ 258 (359)
...+|||++||+|.++..++.+.. .+++++|.+. +++.+++ .++++++.+|.++. . . .+|+|++
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 368999999999999999999864 3899999954 6655541 34789999998441 1 1 2677776
Q ss_pred cchhccCCchHHHHHHHHHHH--hcccCCCCcEEEEEeeec
Q 018205 259 KAIFHAFVDEDCLKILKRCRE--AIASRGDRGKVIIIDIVI 297 (359)
Q Consensus 259 ~~vl~~~~~~~~~~~L~~~~~--~L~p~~~gG~lli~~~~~ 297 (359)
-=-+.. .....+++.+.+ +|++ +.++|+|...
T Consensus 128 DPPy~~---~~~~~~l~~l~~~~~l~~----~~iiv~E~~~ 161 (189)
T TIGR00095 128 DPPFFN---GALQALLELCENNWILED----TVLIVVEEDR 161 (189)
T ss_pred CcCCCC---CcHHHHHHHHHHCCCCCC----CeEEEEEecC
Confidence 332211 122334554443 5666 5577777554
No 205
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.48 E-value=4.5e-05 Score=67.19 Aligned_cols=148 Identities=11% Similarity=0.129 Sum_probs=85.2
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCC-eEEEeeccc-ccccC-------C--------------C---
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGI-KCTVLDLPH-VVPKV-------P--------------D--- 235 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~~~-~~~~a-------~--------------~--- 235 (359)
+.+.+.+....-+..++||||||.-.+-..-+. +.. +++..|..+ -.+.. . +
T Consensus 44 ~~l~~~f~~g~~~g~~llDiGsGPtiy~~lsa~--~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~ 121 (256)
T PF01234_consen 44 KNLHETFSSGGVKGETLLDIGSGPTIYQLLSAC--EWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKR 121 (256)
T ss_dssp HHHHHHHHTSSS-EEEEEEES-TT--GGGTTGG--GTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSS
T ss_pred HHHHHHhCccCcCCCEEEEeCCCcHHHhhhhHH--HhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCc
Confidence 344444432222457999999999655332222 222 588888733 22111 1 0
Q ss_pred ----------CCCc-eEeeCCCCCC--------CCC-ccEEEEcchhccCC--chHHHHHHHHHHHhcccCCCCcEEEEE
Q 018205 236 ----------TDNL-KFIAGDMFQS--------IPP-ADAFFFKAIFHAFV--DEDCLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 236 ----------~~~v-~~~~~d~~~~--------~p~-~D~i~~~~vl~~~~--~~~~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
...| .++..|.+++ .|. ||+|++..+|.... .++....++++.++||| ||.++++
T Consensus 122 ~~~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkp---GG~Lil~ 198 (256)
T PF01234_consen 122 EKWEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKP---GGHLILA 198 (256)
T ss_dssp SGHHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEE---EEEEEEE
T ss_pred chhhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCC---CcEEEEE
Confidence 1123 3666787552 233 99999999998754 55678899999999999 8999988
Q ss_pred eeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCceeEEEE
Q 018205 294 DIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITP 347 (359)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~~~~ 347 (359)
.......-. .+-. ....-..+.+.+++.|+++||.+.+...
T Consensus 199 ~~l~~t~Y~----------vG~~---~F~~l~l~ee~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 199 GVLGSTYYM----------VGGH---KFPCLPLNEEFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp EESS-SEEE----------ETTE---EEE---B-HHHHHHHHHHTTEEEEEEEG
T ss_pred EEcCceeEE----------ECCE---ecccccCCHHHHHHHHHHcCCEEEeccc
Confidence 765432100 0000 0111235899999999999999988875
No 206
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.47 E-value=0.00015 Score=65.30 Aligned_cols=102 Identities=21% Similarity=0.403 Sum_probs=68.3
Q ss_pred CCeEEEeCCCcchHHHHHHHHCCCC-eEEEeecccccccCC-------CCCCceEeeCCCCC---CCCCccEEEEcchhc
Q 018205 195 LGSLVDVGGGTGSFARIISEAFPGI-KCTVLDLPHVVPKVP-------DTDNLKFIAGDMFQ---SIPPADAFFFKAIFH 263 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~~~~~~~a~-------~~~~v~~~~~d~~~---~~p~~D~i~~~~vl~ 263 (359)
+.+|||||.|.|.-+.++-..+|++ +++.++.+..+...- ......+...|+.. ++|..|.|.+..++|
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~~ 193 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVLD 193 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhhh
Confidence 5679999999999988888888987 467777654433221 12223344445432 566666666555554
Q ss_pred cC----CchHHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 018205 264 AF----VDEDCLKILKRCREAIASRGDRGKVIIIDIVINE 299 (359)
Q Consensus 264 ~~----~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~ 299 (359)
.+ ....+...++++..++.| ||.++|+|...+-
T Consensus 194 eLl~d~~ek~i~~~ie~lw~l~~~---gg~lVivErGtp~ 230 (484)
T COG5459 194 ELLPDGNEKPIQVNIERLWNLLAP---GGHLVIVERGTPA 230 (484)
T ss_pred hhccccCcchHHHHHHHHHHhccC---CCeEEEEeCCCch
Confidence 43 333444589999999999 9999999976543
No 207
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.43 E-value=0.00013 Score=60.74 Aligned_cols=101 Identities=17% Similarity=0.249 Sum_probs=66.8
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC-------------CCCCceEeeCCCCCCCCC-ccEEEE
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP-------------DTDNLKFIAGDMFQSIPP-ADAFFF 258 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~-------------~~~~v~~~~~d~~~~~p~-~D~i~~ 258 (359)
....+.|||||.|.++..|+..+|+.-+.|.++.. +.+..+ ...++.+...+.+.-.|. |.--.+
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc
Confidence 44679999999999999999999999999999833 443222 145667776666544443 222222
Q ss_pred cchhccCCchH-----------HHHHHHHHHHhcccCCCCcEEEEEeeec
Q 018205 259 KAIFHAFVDED-----------CLKILKRCREAIASRGDRGKVIIIDIVI 297 (359)
Q Consensus 259 ~~vl~~~~~~~-----------~~~~L~~~~~~L~p~~~gG~lli~~~~~ 297 (359)
+-.++.++|+- ...++.+..-+|++ ||.++.+.-+.
T Consensus 140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~---gg~~ytitDv~ 186 (249)
T KOG3115|consen 140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLRE---GGILYTITDVK 186 (249)
T ss_pred ccceeecCChhHhhhhccceeechhHHHHHHhhhhc---CceEEEEeeHH
Confidence 23333333332 13577788888998 89888877554
No 208
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.41 E-value=0.0036 Score=55.83 Aligned_cols=135 Identities=12% Similarity=0.122 Sum_probs=87.6
Q ss_pred CCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc--------ccccC---------------------------------
Q 018205 195 LGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH--------VVPKV--------------------------------- 233 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~--------~~~~a--------------------------------- 233 (359)
..+||-=|||.|.++..|+...+.+++- +.+- ++...
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~~~qGN--EfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~ 228 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGFKCQGN--EFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDI 228 (369)
T ss_pred CceEEecCCCchhHHHHHHHhccccccc--HHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccc
Confidence 5789999999999999999987765431 2211 01000
Q ss_pred ------CCCCCceEeeCCCCCC--CC----CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCC
Q 018205 234 ------PDTDNLKFIAGDMFQS--IP----PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKK 301 (359)
Q Consensus 234 ------~~~~~v~~~~~d~~~~--~p----~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~ 301 (359)
...+..+...|||.+- .+ .+|+|+.++.+.-- ..+...|+.|+++|+| ||.++=+.+......
T Consensus 229 ~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa--~NileYi~tI~~iLk~---GGvWiNlGPLlYHF~ 303 (369)
T KOG2798|consen 229 HPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTA--HNILEYIDTIYKILKP---GGVWINLGPLLYHFE 303 (369)
T ss_pred cccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeech--HHHHHHHHHHHHhccC---CcEEEeccceeeecc
Confidence 0124456678999762 22 39999988666433 4567899999999999 776665555443222
Q ss_pred cchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCceeEEEEe
Q 018205 302 EDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~~~~~ 348 (359)
... +. ....+-+++.+++..+...-||++++-..+
T Consensus 304 d~~---------g~---~~~~siEls~edl~~v~~~~GF~~~ke~~I 338 (369)
T KOG2798|consen 304 DTH---------GV---ENEMSIELSLEDLKRVASHRGFEVEKERGI 338 (369)
T ss_pred CCC---------CC---cccccccccHHHHHHHHHhcCcEEEEeeee
Confidence 110 00 001134679999999999999998877644
No 209
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.
Probab=97.41 E-value=6.4e-05 Score=49.26 Aligned_cols=46 Identities=28% Similarity=0.557 Sum_probs=39.9
Q ss_pred cCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeee
Q 018205 38 LDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTA 86 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~ 86 (359)
+.|++.|...++++|+.|||+++|+ +...+.|+|+.|+..|+++++
T Consensus 6 l~iL~~l~~~~~~~t~~eia~~~gl---~~stv~r~L~tL~~~g~v~~d 51 (52)
T PF09339_consen 6 LRILEALAESGGPLTLSEIARALGL---PKSTVHRLLQTLVEEGYVERD 51 (52)
T ss_dssp HHHHHCHHCTBSCEEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCcCeecC
Confidence 4567788776678899999999999 789999999999999999875
No 210
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.37 E-value=0.0004 Score=65.47 Aligned_cols=89 Identities=13% Similarity=0.118 Sum_probs=59.7
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC------CCCceEeeCCCCCCC----CCccEEEEcchh
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD------TDNLKFIAGDMFQSI----PPADAFFFKAIF 262 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~------~~~v~~~~~d~~~~~----p~~D~i~~~~vl 262 (359)
+..+|||+|||+|.++..++.. ..+++++|++ .+++.|+. .+++++..+|+.+.. ..||+|++.=--
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr 310 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPR 310 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCC
Confidence 3479999999999999999865 5689999994 47776662 347899999984421 248998874221
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCcEEEE
Q 018205 263 HAFVDEDCLKILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 263 ~~~~~~~~~~~L~~~~~~L~p~~~gG~lli 292 (359)
- .-...+++.+.+ ++| ++.+++
T Consensus 311 ~----G~~~~~l~~l~~-~~p---~~ivyv 332 (374)
T TIGR02085 311 R----GIGKELCDYLSQ-MAP---KFILYS 332 (374)
T ss_pred C----CCcHHHHHHHHh-cCC---CeEEEE
Confidence 1 111345555543 677 454444
No 211
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.36 E-value=0.00031 Score=60.19 Aligned_cols=120 Identities=21% Similarity=0.229 Sum_probs=83.9
Q ss_pred CCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-c---ccccCC---CCCCceEeeCCCCCC--CCC-ccEEEEcchhcc
Q 018205 195 LGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-H---VVPKVP---DTDNLKFIAGDMFQS--IPP-ADAFFFKAIFHA 264 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~---~~~~a~---~~~~v~~~~~d~~~~--~p~-~D~i~~~~vl~~ 264 (359)
..+++|||+|.|.=+.-++-.+|+.+++.+|.- . .++.+. ..++++++++.+.+- .+. ||+|++.-+-.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva~- 146 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVAS- 146 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehccc-
Confidence 689999999999999999988999999999972 2 444444 367799999988442 234 99999877642
Q ss_pred CCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCceeE
Q 018205 265 FVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFK 344 (359)
Q Consensus 265 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~ 344 (359)
...++.-+...+++ ||.++..-... ..+ -..+.+......|+...+
T Consensus 147 -----L~~l~e~~~pllk~---~g~~~~~k~~~--------------~~~------------e~~e~~~a~~~~~~~~~~ 192 (215)
T COG0357 147 -----LNVLLELCLPLLKV---GGGFLAYKGLA--------------GKD------------ELPEAEKAILPLGGQVEK 192 (215)
T ss_pred -----hHHHHHHHHHhccc---CCcchhhhHHh--------------hhh------------hHHHHHHHHHhhcCcEEE
Confidence 23477777788888 77665411000 000 234556666777888888
Q ss_pred EEEeC
Q 018205 345 ITPVY 349 (359)
Q Consensus 345 ~~~~~ 349 (359)
+....
T Consensus 193 ~~~~~ 197 (215)
T COG0357 193 VFSLT 197 (215)
T ss_pred EEEee
Confidence 87663
No 212
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.22 E-value=0.00092 Score=55.54 Aligned_cols=102 Identities=16% Similarity=0.220 Sum_probs=71.7
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC-----CCCCceEeeCCCCCCCCCccEEEEcchhccCCc
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP-----DTDNLKFIAGDMFQSIPPADAFFFKAIFHAFVD 267 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~-----~~~~v~~~~~d~~~~~p~~D~i~~~~vl~~~~~ 267 (359)
..++|||+|.|+|..++..++.. -..++..|++. .+..++ ..-.+.+...|..-+-+.+|+++.+.++++-
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~LagDlfy~~-- 155 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLLAGDLFYNH-- 155 (218)
T ss_pred ccceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeEEEeeceecCc--
Confidence 46899999999999999887763 23677777743 333332 2345677778875555579999999999766
Q ss_pred hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCC
Q 018205 268 EDCLKILKRCREAIASRGDRGKVIIIDIVINEKK 301 (359)
Q Consensus 268 ~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~ 301 (359)
....++++ +...|..+ |-.++|.++.++.-.
T Consensus 156 ~~a~~l~~-~~~~l~~~--g~~vlvgdp~R~~lp 186 (218)
T COG3897 156 TEADRLIP-WKDRLAEA--GAAVLVGDPGRAYLP 186 (218)
T ss_pred hHHHHHHH-HHHHHHhC--CCEEEEeCCCCCCCc
Confidence 44456888 55555542 778888887776654
No 213
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=97.18 E-value=0.0045 Score=55.26 Aligned_cols=164 Identities=15% Similarity=0.114 Sum_probs=100.4
Q ss_pred HhhcccchHHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCC---------CCCCceEeeC
Q 018205 174 MASDSQLANLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVP---------DTDNLKFIAG 244 (359)
Q Consensus 174 m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~---------~~~~v~~~~~ 244 (359)
+...+++....+..+- -.+...||.+|||--.....+.. .++++++-+|.|++++.-+ ...+..++..
T Consensus 63 ~~~Rtr~~D~~i~~~~--~~g~~qvV~LGaGlDTr~~Rl~~-~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~ 139 (260)
T TIGR00027 63 IAVRTRFFDDFLLAAV--AAGIRQVVILGAGLDTRAYRLPW-PDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPV 139 (260)
T ss_pred HHHHHHHHHHHHHHHH--hcCCcEEEEeCCccccHHHhcCC-CCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEecc
Confidence 3444444433333332 13456899999999877776632 2367888888888665221 2578899999
Q ss_pred CCCCCC------CCc-----cEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhh
Q 018205 245 DMFQSI------PPA-----DAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLY 313 (359)
Q Consensus 245 d~~~~~------p~~-----D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~ 313 (359)
|+.+.. .+| -++++-.++.+++.+++.++|+.+.+...| |..+++|...+........ ......
T Consensus 140 Dl~~~w~~~L~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~----gs~l~~d~~~~~~~~~~~~-~~~~~~ 214 (260)
T TIGR00027 140 DLRQDWPAALAAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAP----GSRLAFDYVRPLDGEWRAG-MRAPVY 214 (260)
T ss_pred CchhhHHHHHHhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCC----CcEEEEEeccccchhHHHH-HHHHHH
Confidence 985321 123 377788999999999999999999998877 4556667655421110000 001111
Q ss_pred hhhhhhhcC--CcccCHHHHHHHHHHcCCceeEE
Q 018205 314 DMLMMVAVR--GSERTEKEWEKLFLDAGFSHFKI 345 (359)
Q Consensus 314 ~~~~~~~~~--g~~~t~~~~~~ll~~aGf~~~~~ 345 (359)
......... -...+.+++.++|++.||.....
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 215 HAARGVDGSGLVFGIDRADVAEWLAERGWRASEH 248 (260)
T ss_pred HhhhcccccccccCCChhhHHHHHHHCCCeeecC
Confidence 000000000 11247899999999999998765
No 214
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.16 E-value=0.00059 Score=56.16 Aligned_cols=96 Identities=16% Similarity=0.310 Sum_probs=71.3
Q ss_pred CeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCCC------CCCceEeeCCCCC-CCCCccEEEEcchhccCCc
Q 018205 196 GSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVPD------TDNLKFIAGDMFQ-SIPPADAFFFKAIFHAFVD 267 (359)
Q Consensus 196 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~p~~D~i~~~~vl~~~~~ 267 (359)
..+.|+|.|+|-++...++. .-++++++. |...+.|.+ ..+++++.+|..+ .+..+|+|+|-..=-.+-+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvicEmlDTaLi~ 111 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVICEMLDTALIE 111 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHHHHhhHHhhc
Confidence 67899999999998877766 447999988 545555553 5789999999976 6767999998544333334
Q ss_pred hHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 268 EDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 268 ~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
++...+++.+.+.|+. ++.++=.+..
T Consensus 112 E~qVpV~n~vleFLr~---d~tiiPq~v~ 137 (252)
T COG4076 112 EKQVPVINAVLEFLRY---DPTIIPQEVR 137 (252)
T ss_pred ccccHHHHHHHHHhhc---CCccccHHHh
Confidence 5556789999999998 7877755433
No 215
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.11 E-value=0.042 Score=46.14 Aligned_cols=141 Identities=11% Similarity=0.116 Sum_probs=95.2
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-c----ccccCCCCCCceEeeCCCCCCC------CCccEEEEcc
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-H----VVPKVPDTDNLKFIAGDMFQSI------PPADAFFFKA 260 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~----~~~~a~~~~~v~~~~~d~~~~~------p~~D~i~~~~ 260 (359)
+++.++||=+|+.+|++...++...+.-.+.+++.+ . .+..|++.+++-.+-+|...+. +.+|+|+.--
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~DV 153 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQDV 153 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEEEec
Confidence 678999999999999999999998887789999983 2 4455667889999999985442 3588887522
Q ss_pred hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCC
Q 018205 261 IFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGF 340 (359)
Q Consensus 261 vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf 340 (359)
. .+.++.-+..++..-|++ +|.+++.--...-..... ... . =.++. +-|++.||
T Consensus 154 A----Qp~Qa~I~~~Na~~FLk~---~G~~~i~iKArSIdvT~d---p~~-v--------------f~~ev-~kL~~~~f 207 (231)
T COG1889 154 A----QPNQAEILADNAEFFLKK---GGYVVIAIKARSIDVTAD---PEE-V--------------FKDEV-EKLEEGGF 207 (231)
T ss_pred C----CchHHHHHHHHHHHhccc---CCeEEEEEEeecccccCC---HHH-H--------------HHHHH-HHHHhcCc
Confidence 1 234555578888999998 776666543333222110 000 0 01233 45688899
Q ss_pred ceeEEEEeCC---ceeEEEEe
Q 018205 341 SHFKITPVYG---IKSLIEVY 358 (359)
Q Consensus 341 ~~~~~~~~~~---~~~vi~~~ 358 (359)
++.++..+.. -+.+|.++
T Consensus 208 ~i~e~~~LePye~DH~~i~~~ 228 (231)
T COG1889 208 EILEVVDLEPYEKDHALIVAK 228 (231)
T ss_pred eeeEEeccCCcccceEEEEEe
Confidence 9999988743 35565554
No 216
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.07 E-value=0.00024 Score=56.96 Aligned_cols=98 Identities=13% Similarity=0.162 Sum_probs=67.6
Q ss_pred CCeEEEeCCCc-chHHHHHHHHCCCCeEEEeeccc-ccccCC---------CCCCceEeeCCCCCC-----CCCccEEEE
Q 018205 195 LGSLVDVGGGT-GSFARIISEAFPGIKCTVLDLPH-VVPKVP---------DTDNLKFIAGDMFQS-----IPPADAFFF 258 (359)
Q Consensus 195 ~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~---------~~~~v~~~~~d~~~~-----~p~~D~i~~ 258 (359)
..+||++|+|. |..+..++..-|..+|...|-.+ .++..+ ...++..+..+.... ...||+|++
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence 47899999995 66667777778888999999843 554433 234454555555332 224999999
Q ss_pred cchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 018205 259 KAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVI 297 (359)
Q Consensus 259 ~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~ 297 (359)
...+.. ++-...+.+.|+..|+| .|+-++..+-+
T Consensus 110 ADClFf--dE~h~sLvdtIk~lL~p---~g~Al~fsPRR 143 (201)
T KOG3201|consen 110 ADCLFF--DEHHESLVDTIKSLLRP---SGRALLFSPRR 143 (201)
T ss_pred ccchhH--HHHHHHHHHHHHHHhCc---ccceeEecCcc
Confidence 988742 34456799999999999 67766655443
No 217
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.06 E-value=0.00052 Score=54.04 Aligned_cols=68 Identities=16% Similarity=0.192 Sum_probs=49.4
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCCC-----CCCceEeeCCCCCCCC--C-ccEEEEcchh
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVPD-----TDNLKFIAGDMFQSIP--P-ADAFFFKAIF 262 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~~~p--~-~D~i~~~~vl 262 (359)
.++.+.|+|||.|.++.... .+..-.++|+|+ |+.++.+.. .-++.+++.|+.+..+ + ||..+.+--+
T Consensus 48 Egkkl~DLgcgcGmLs~a~s-m~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFS-MPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPF 124 (185)
T ss_pred cCcchhhhcCchhhhHHHhh-cCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCC
Confidence 47899999999999984433 233457999999 668887662 3456888899876433 2 8988876554
No 218
>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B ....
Probab=97.02 E-value=0.00037 Score=47.30 Aligned_cols=55 Identities=18% Similarity=0.292 Sum_probs=45.4
Q ss_pred HHHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 29 STSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 29 ~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
+.+|..-.++.|+..|.. ++|.|+.|||+.+|+ +...+.+.|+.|...|+++...
T Consensus 4 ~~aL~~p~R~~Il~~L~~-~~~~t~~ela~~l~~---~~~t~s~hL~~L~~aGli~~~~ 58 (61)
T PF12840_consen 4 FKALSDPTRLRILRLLAS-NGPMTVSELAEELGI---SQSTVSYHLKKLEEAGLIEVER 58 (61)
T ss_dssp HHHHTSHHHHHHHHHHHH-CSTBEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHhCCHHHHHHHHHHhc-CCCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEEec
Confidence 345556677888888833 279999999999999 6789999999999999999875
No 219
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.01 E-value=0.001 Score=59.57 Aligned_cols=93 Identities=14% Similarity=0.272 Sum_probs=63.2
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCC----CCCCceEeeCCCCC-CCCC---
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVP----DTDNLKFIAGDMFQ-SIPP--- 252 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~----~~~~v~~~~~d~~~-~~p~--- 252 (359)
+.+++.++ ..+...|+|||+|.|.++..|++.. .+++++|.. ..++..+ ..++++++.+|+++ +.+.
T Consensus 20 ~~Iv~~~~--~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~~ 95 (262)
T PF00398_consen 20 DKIVDALD--LSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDLLK 95 (262)
T ss_dssp HHHHHHHT--CGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHCS
T ss_pred HHHHHhcC--CCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHhhc
Confidence 45666666 5578999999999999999999986 689999994 3554433 46899999999976 3322
Q ss_pred -ccEEEEcchhccCCchHHHHHHHHHHHhcc
Q 018205 253 -ADAFFFKAIFHAFVDEDCLKILKRCREAIA 282 (359)
Q Consensus 253 -~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~ 282 (359)
-.+.+.++.=++.+ ..++.++...-+
T Consensus 96 ~~~~~vv~NlPy~is----~~il~~ll~~~~ 122 (262)
T PF00398_consen 96 NQPLLVVGNLPYNIS----SPILRKLLELYR 122 (262)
T ss_dssp SSEEEEEEEETGTGH----HHHHHHHHHHGG
T ss_pred CCceEEEEEecccch----HHHHHHHhhccc
Confidence 23444444444343 346666666433
No 220
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.98 E-value=0.0014 Score=59.47 Aligned_cols=92 Identities=21% Similarity=0.409 Sum_probs=69.7
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCC-CeEEEeec-ccccccCC-------------CCCCceEeeCCCCCCC----CCc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPG-IKCTVLDL-PHVVPKVP-------------DTDNLKFIAGDMFQSI----PPA 253 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~-------------~~~~v~~~~~d~~~~~----p~~ 253 (359)
++..+||-+|||.|..++.+.+ +|+ -+++.+|+ |.|++.++ ..+|++++..|.++.. ..|
T Consensus 288 ~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 5678999999999999999876 774 48999999 67998877 2689999999987632 249
Q ss_pred cEEEEcchhccCCchH--------HHHHHHHHHHhcccCCCCcEEEEE
Q 018205 254 DAFFFKAIFHAFVDED--------CLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 254 D~i~~~~vl~~~~~~~--------~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
|.|+.- ++|+. ..++-.-+++.|++ +|.+++.
T Consensus 367 D~vIVD-----l~DP~tps~~rlYS~eFY~ll~~~l~e---~Gl~VvQ 406 (508)
T COG4262 367 DVVIVD-----LPDPSTPSIGRLYSVEFYRLLSRHLAE---TGLMVVQ 406 (508)
T ss_pred cEEEEe-----CCCCCCcchhhhhhHHHHHHHHHhcCc---CceEEEe
Confidence 988852 33322 23567777889998 7776663
No 221
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=96.97 E-value=0.0021 Score=60.60 Aligned_cols=90 Identities=17% Similarity=0.114 Sum_probs=66.3
Q ss_pred CCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCCC------CCCceEeeCCCCCC---CCCccEEEEcchhcc
Q 018205 195 LGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVPD------TDNLKFIAGDMFQS---IPPADAFFFKAIFHA 264 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~---~p~~D~i~~~~vl~~ 264 (359)
..+|||++||+|..+..++...+..+++++|+ +..++.++. ..++++..+|.... ...||+|++.- .
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~-- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F-- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C--
Confidence 46899999999999999988876568999999 457776652 33466888887431 23599999842 1
Q ss_pred CCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 018205 265 FVDEDCLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 265 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
..+ ..+++.+.+.+++ +|.+++.
T Consensus 135 -Gs~--~~~l~~al~~~~~---~gilyvS 157 (382)
T PRK04338 135 -GSP--APFLDSAIRSVKR---GGLLCVT 157 (382)
T ss_pred -CCc--HHHHHHHHHHhcC---CCEEEEE
Confidence 222 3488887788888 7888876
No 222
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=96.85 E-value=0.0016 Score=45.15 Aligned_cols=60 Identities=20% Similarity=0.211 Sum_probs=47.0
Q ss_pred HHhcCcchhcccCCC-CCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccc
Q 018205 35 AVELDIPEVIHKHGR-PITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTL 103 (359)
Q Consensus 35 a~~lglf~~L~~~~~-~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~ 103 (359)
..+-.|+..|...|+ ++|+.|||+.+|+ +...++++|..|...|+++.... .++.|+++.
T Consensus 6 ~~~~~IL~~L~~~g~~~~ta~eLa~~lgl---~~~~v~r~L~~L~~~G~V~~~~~------~~~~W~i~~ 66 (68)
T smart00550 6 SLEEKILEFLENSGDETSTALQLAKNLGL---PKKEVNRVLYSLEKKGKVCKQGG------TPPLWKLTD 66 (68)
T ss_pred HHHHHHHHHHHHCCCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecCC------CCCceEeec
Confidence 345567788877544 3999999999999 67899999999999999988642 136677654
No 223
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=96.84 E-value=0.0017 Score=60.95 Aligned_cols=99 Identities=18% Similarity=0.264 Sum_probs=74.6
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCC-eEEEeeccc-ccccCCC--------CCCceEeeCCCCCCC----C---CccEE
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGI-KCTVLDLPH-VVPKVPD--------TDNLKFIAGDMFQSI----P---PADAF 256 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~~~-~~~~a~~--------~~~v~~~~~d~~~~~----p---~~D~i 256 (359)
.+++|||+=|=||.++...+.. ++ ++|.+|.+. .++.|++ ..++.++++|.++.+ . .||+|
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~g--GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlI 294 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALG--GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLI 294 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhc--CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEE
Confidence 3799999999999999998876 56 899999977 8887772 567899999997632 1 49999
Q ss_pred EEc------chhccCC-chHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 018205 257 FFK------AIFHAFV-DEDCLKILKRCREAIASRGDRGKVIIIDIVI 297 (359)
Q Consensus 257 ~~~------~vl~~~~-~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~ 297 (359)
++- .--.-|. ..+...++..+.++|+| ||.+++.....
T Consensus 295 ilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~p---gG~l~~~s~~~ 339 (393)
T COG1092 295 ILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAP---GGTLVTSSCSR 339 (393)
T ss_pred EECCcccccCcccchhHHHHHHHHHHHHHHHcCC---CCEEEEEecCC
Confidence 952 0000121 23456799999999999 88888766443
No 224
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=96.81 E-value=0.00082 Score=57.23 Aligned_cols=86 Identities=17% Similarity=0.224 Sum_probs=58.9
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCC-------CCCCceEeeCCCCCCC--CCccEEEEcch
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVP-------DTDNLKFIAGDMFQSI--PPADAFFFKAI 261 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-------~~~~v~~~~~d~~~~~--p~~D~i~~~~v 261 (359)
..+..+|+|.-||.|.++..+++..+...++++|+ |..++..+ -.+++....+|..+-. ..+|-|++..-
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~lp 178 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNLP 178 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--T
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECCh
Confidence 34678999999999999999999777888999999 55655443 2577899999995533 24898887542
Q ss_pred hccCCchHHHHHHHHHHHhccc
Q 018205 262 FHAFVDEDCLKILKRCREAIAS 283 (359)
Q Consensus 262 l~~~~~~~~~~~L~~~~~~L~p 283 (359)
- ....+|..+.+++++
T Consensus 179 ~------~~~~fl~~~~~~~~~ 194 (200)
T PF02475_consen 179 E------SSLEFLDAALSLLKE 194 (200)
T ss_dssp S------SGGGGHHHHHHHEEE
T ss_pred H------HHHHHHHHHHHHhcC
Confidence 1 123488999999998
No 225
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=96.81 E-value=0.0087 Score=49.44 Aligned_cols=72 Identities=21% Similarity=0.414 Sum_probs=50.0
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeecccccccCCCCCCceEeeC-CCCCC---------CC
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDLPHVVPKVPDTDNLKFIAG-DMFQS---------IP 251 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~v~~~~~-d~~~~---------~p 251 (359)
++-+++. .+.+..+|||+||..|.++.-..++. |+-.+.|+|+-..... ..+.++.+ |+.++ .|
T Consensus 59 EindKy~-~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p~----~Ga~~i~~~dvtdp~~~~ki~e~lp 133 (232)
T KOG4589|consen 59 EINDKYR-FLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEPP----EGATIIQGNDVTDPETYRKIFEALP 133 (232)
T ss_pred eehhhcc-ccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccCC----CCcccccccccCCHHHHHHHHHhCC
Confidence 4455555 46778999999999999998887776 9999999998442221 33455555 66432 34
Q ss_pred C--ccEEEEc
Q 018205 252 P--ADAFFFK 259 (359)
Q Consensus 252 ~--~D~i~~~ 259 (359)
. +|+|++-
T Consensus 134 ~r~VdvVlSD 143 (232)
T KOG4589|consen 134 NRPVDVVLSD 143 (232)
T ss_pred CCcccEEEec
Confidence 3 7888753
No 226
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=96.78 E-value=0.0017 Score=60.61 Aligned_cols=51 Identities=20% Similarity=0.363 Sum_probs=41.4
Q ss_pred CeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC------CCCceEeeCCCCC
Q 018205 196 GSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD------TDNLKFIAGDMFQ 248 (359)
Q Consensus 196 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~------~~~v~~~~~d~~~ 248 (359)
.+|||++||+|.++..+++... +++++|.+ ++++.|++ ..+++++.+|..+
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence 4799999999999999998863 89999995 48877762 3468899998743
No 227
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation.
Probab=96.77 E-value=0.0013 Score=48.40 Aligned_cols=57 Identities=18% Similarity=0.302 Sum_probs=46.4
Q ss_pred cCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccc
Q 018205 38 LDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLT 104 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~ 104 (359)
+.|++.|...++++|+.|||+.+|+ +...+.|.|+.|+..|++..... ++.|++++.
T Consensus 8 ~~Il~~l~~~~~~~t~~~ia~~l~i---~~~tv~r~l~~L~~~g~l~~~~~-------~~~y~l~~~ 64 (91)
T smart00346 8 LAVLRALAEEPGGLTLAELAERLGL---SKSTAHRLLNTLQELGYVEQDGQ-------NGRYRLGPK 64 (91)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHhCC---CHHHHHHHHHHHHHCCCeeecCC-------CCceeecHH
Confidence 4566777664368999999999999 68999999999999999988631 467888764
No 228
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=96.77 E-value=0.0069 Score=48.90 Aligned_cols=96 Identities=16% Similarity=0.306 Sum_probs=63.8
Q ss_pred EEEeCCCcchHHHHHHHHCCC-CeEEEeeccc-ccccCCC-C--CC---ceEeeCCCCC---CCC---CccEEEEcchhc
Q 018205 198 LVDVGGGTGSFARIISEAFPG-IKCTVLDLPH-VVPKVPD-T--DN---LKFIAGDMFQ---SIP---PADAFFFKAIFH 263 (359)
Q Consensus 198 vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~~~-~~~~a~~-~--~~---v~~~~~d~~~---~~p---~~D~i~~~~vl~ 263 (359)
++|+|||+|... .+....+. ..++++|.+. ++..+.. . .. +.+..+|... ++. .+|++ +....+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 999999999976 44443333 4788899954 5554331 1 11 5777777643 333 48999 544444
Q ss_pred cCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCC
Q 018205 264 AFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEK 300 (359)
Q Consensus 264 ~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~ 300 (359)
++.+ ....+.++.+.++| +|.+++........
T Consensus 130 ~~~~--~~~~~~~~~~~l~~---~g~~~~~~~~~~~~ 161 (257)
T COG0500 130 HLLP--PAKALRELLRVLKP---GGRLVLSDLLRDGL 161 (257)
T ss_pred hcCC--HHHHHHHHHHhcCC---CcEEEEEeccCCCC
Confidence 4433 46799999999999 88888877765543
No 229
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=96.71 E-value=0.008 Score=50.80 Aligned_cols=102 Identities=18% Similarity=0.340 Sum_probs=74.0
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCC-----CCCCceEeeCCC---CCCCC--CccEEEEcchh
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVP-----DTDNLKFIAGDM---FQSIP--PADAFFFKAIF 262 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~-----~~~~v~~~~~d~---~~~~p--~~D~i~~~~vl 262 (359)
+++.+||.||-|-|.....+.++.|..+.+.---|.+.+.-+ +..+|.+..+-- ...+| .||-|..--.-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~ 179 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYS 179 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechh
Confidence 678999999999999999998888876655433366666554 467888888744 33455 39998875443
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 018205 263 HAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINE 299 (359)
Q Consensus 263 ~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~ 299 (359)
.+. ++...+-+.+.++||| +|.+-.+.....+
T Consensus 180 e~y--Edl~~~hqh~~rLLkP---~gv~SyfNg~~~~ 211 (271)
T KOG1709|consen 180 ELY--EDLRHFHQHVVRLLKP---EGVFSYFNGLGAD 211 (271)
T ss_pred hHH--HHHHHHHHHHhhhcCC---CceEEEecCcccc
Confidence 444 6677899999999999 8877666554433
No 230
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=96.67 E-value=0.011 Score=57.05 Aligned_cols=105 Identities=13% Similarity=0.161 Sum_probs=72.6
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCC-CeEEEeeccc-ccccCC------CCCCceEeeCCCCC---CCC-CccEEE--
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPG-IKCTVLDLPH-VVPKVP------DTDNLKFIAGDMFQ---SIP-PADAFF-- 257 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~~~-~~~~a~------~~~~v~~~~~d~~~---~~p-~~D~i~-- 257 (359)
..+..+|||+++|.|.-+..++....+ -.+++.|++. -++..+ ...++.+...|... .++ .||.|+
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 356789999999999999999998754 4899999943 444333 23567777777642 234 399999
Q ss_pred --Ecch---------hccCCchHH-------HHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 018205 258 --FKAI---------FHAFVDEDC-------LKILKRCREAIASRGDRGKVIIIDIVINE 299 (359)
Q Consensus 258 --~~~v---------l~~~~~~~~-------~~~L~~~~~~L~p~~~gG~lli~~~~~~~ 299 (359)
|+.. ...|+.+++ .++|..+.+.|+| ||.|+........
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~Lkp---GG~LVYSTCT~~~ 247 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKP---GGTLVYSTCTLNR 247 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCC---CcEEEEECCCCCH
Confidence 5422 222332222 5799999999999 8888776665543
No 231
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=96.64 E-value=0.0026 Score=51.16 Aligned_cols=83 Identities=20% Similarity=0.328 Sum_probs=55.4
Q ss_pred CCCCeEEEeCCCcchHHHHHHHH----CCCCeEEEeecc-cccccCCC---------CCCceEeeCCCCCC--CCCccEE
Q 018205 193 QGLGSLVDVGGGTGSFARIISEA----FPGIKCTVLDLP-HVVPKVPD---------TDNLKFIAGDMFQS--IPPADAF 256 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~----~p~~~~~~~D~~-~~~~~a~~---------~~~v~~~~~d~~~~--~p~~D~i 256 (359)
.+..+|+|+|||.|.++..|+.. .++.+++++|.. ..++.+.. ..++++..+++... ....+++
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDIL 103 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeEE
Confidence 56789999999999999999982 278899999994 45555541 25667777766332 2236677
Q ss_pred EEcchhccCCchHHHHHHHHHHH
Q 018205 257 FFKAIFHAFVDEDCLKILKRCRE 279 (359)
Q Consensus 257 ~~~~vl~~~~~~~~~~~L~~~~~ 279 (359)
+.-|.--.++ ..+|+.+.+
T Consensus 104 vgLHaCG~Ls----~~~l~~~~~ 122 (141)
T PF13679_consen 104 VGLHACGDLS----DRALRLFIR 122 (141)
T ss_pred EEeecccchH----HHHHHHHHH
Confidence 7544433332 346666665
No 232
>PRK10141 DNA-binding transcriptional repressor ArsR; Provisional
Probab=96.62 E-value=0.0022 Score=49.45 Aligned_cols=57 Identities=16% Similarity=0.199 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 27 VSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 27 ~~~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
-.+++|.--.++.|+..|... ++.++.||++.+++ .+..+.+.|+.|...|+++..+
T Consensus 8 ~~fkaLadptRl~IL~~L~~~-~~~~v~ela~~l~l---sqstvS~HL~~L~~AGLV~~~r 64 (117)
T PRK10141 8 QLFKILSDETRLGIVLLLRES-GELCVCDLCTALDQ---SQPKISRHLALLRESGLLLDRK 64 (117)
T ss_pred HHHHHhCCHHHHHHHHHHHHc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCceEEEE
Confidence 356677777889999999752 68999999999999 6899999999999999998776
No 233
>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities. One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B ....
Probab=96.62 E-value=0.001 Score=42.46 Aligned_cols=44 Identities=18% Similarity=0.388 Sum_probs=38.3
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceee
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFST 85 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~ 85 (359)
++.|...|.+ ++.++.||++.+|+ ++..+.+.|+.|...|++++
T Consensus 4 R~~Il~~L~~--~~~~~~el~~~l~~---s~~~vs~hL~~L~~~glV~~ 47 (47)
T PF01022_consen 4 RLRILKLLSE--GPLTVSELAEELGL---SQSTVSHHLKKLREAGLVEK 47 (47)
T ss_dssp HHHHHHHHTT--SSEEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHh--CCCchhhHHHhccc---cchHHHHHHHHHHHCcCeeC
Confidence 4566777877 89999999999999 78999999999999999864
No 234
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.61 E-value=0.0031 Score=56.28 Aligned_cols=96 Identities=17% Similarity=0.346 Sum_probs=55.1
Q ss_pred CCCeEEEeCCCc-chHHHHHHHHC-CCCeEEEeec-ccccccCCC--------CCCceEeeCCCCC---CCCCccEEEEc
Q 018205 194 GLGSLVDVGGGT-GSFARIISEAF-PGIKCTVLDL-PHVVPKVPD--------TDNLKFIAGDMFQ---SIPPADAFFFK 259 (359)
Q Consensus 194 ~~~~vlDvG~G~-G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~--------~~~v~~~~~d~~~---~~p~~D~i~~~ 259 (359)
.+.+|+=||||. -..++.+++.+ ++..++++|+ ++.++.+++ ..+++|+++|..+ +...||+|++.
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 357999999996 45666666553 6788999999 446666641 6789999999854 23469999886
Q ss_pred chhccCCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 018205 260 AIFHAFVDEDCLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 260 ~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
.... ...++..++|.++.+.++| |..|++-
T Consensus 200 alVg-~~~e~K~~Il~~l~~~m~~---ga~l~~R 229 (276)
T PF03059_consen 200 ALVG-MDAEPKEEILEHLAKHMAP---GARLVVR 229 (276)
T ss_dssp TT-S-----SHHHHHHHHHHHS-T---TSEEEEE
T ss_pred hhcc-cccchHHHHHHHHHhhCCC---CcEEEEe
Confidence 6553 3334557899999999999 6766663
No 235
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=96.61 E-value=0.00046 Score=56.48 Aligned_cols=62 Identities=24% Similarity=0.475 Sum_probs=44.5
Q ss_pred CeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCC-------CCCCceEeeCCCCCC---CC--C-ccEEEEc
Q 018205 196 GSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVP-------DTDNLKFIAGDMFQS---IP--P-ADAFFFK 259 (359)
Q Consensus 196 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-------~~~~v~~~~~d~~~~---~p--~-~D~i~~~ 259 (359)
..|+|+-||.|.-++.+++.++ +++++|+ +..++.|+ -.++|+++.+|+++. +. . +|+|+++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~--~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFD--RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred CEEEEeccCcCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 3699999999999999999854 5999999 44666655 267999999999652 22 2 7999965
No 236
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.53 E-value=0.013 Score=51.14 Aligned_cols=101 Identities=17% Similarity=0.149 Sum_probs=66.5
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCC-----CCCCceEeeCCCCCCCC--CccEEEEcchhc
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVP-----DTDNLKFIAGDMFQSIP--PADAFFFKAIFH 263 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~-----~~~~v~~~~~d~~~~~p--~~D~i~~~~vl~ 263 (359)
.+.+.+|+|||||.-=++.-.....|+..+++.|+. .+++... ...+.++...|.....| .+|+.++.-++|
T Consensus 103 ~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLllK~lp 182 (251)
T PF07091_consen 103 IPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALLLKTLP 182 (251)
T ss_dssp S---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEEET-HH
T ss_pred CCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhHHHHHH
Confidence 345899999999999888888888888999999994 4666544 35677888889977655 399999999998
Q ss_pred cCCchHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 018205 264 AFVDEDCLKILKRCREAIASRGDRGKVIIIDIVI 297 (359)
Q Consensus 264 ~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~ 297 (359)
.+...+. ..-.++-+.++. -.++|.-+..
T Consensus 183 ~le~q~~-g~g~~ll~~~~~----~~~vVSfPtr 211 (251)
T PF07091_consen 183 CLERQRR-GAGLELLDALRS----PHVVVSFPTR 211 (251)
T ss_dssp HHHHHST-THHHHHHHHSCE----SEEEEEEES-
T ss_pred HHHHHhc-chHHHHHHHhCC----CeEEEecccc
Confidence 7754433 344455556653 4566655444
No 237
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=96.52 E-value=0.0029 Score=53.18 Aligned_cols=99 Identities=13% Similarity=0.124 Sum_probs=62.4
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCe---------EEEeecc-cccccCC-------CCCCceEeeCC
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIK---------CTVLDLP-HVVPKVP-------DTDNLKFIAGD 245 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~---------~~~~D~~-~~~~~a~-------~~~~v~~~~~d 245 (359)
.++.... +.+...|+|--||+|++++..+...++.. ++|.|+. .+++.|+ -...+.+...|
T Consensus 19 ~ll~la~--~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D 96 (179)
T PF01170_consen 19 ALLNLAG--WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWD 96 (179)
T ss_dssp HHHHHTT----TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--
T ss_pred HHHHHhC--CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecc
Confidence 3444344 45678999999999999998888777766 9999995 4777665 24568899999
Q ss_pred CCC-CC-C-CccEEEEcchhcc-CCc-----hHHHHHHHHHHHhccc
Q 018205 246 MFQ-SI-P-PADAFFFKAIFHA-FVD-----EDCLKILKRCREAIAS 283 (359)
Q Consensus 246 ~~~-~~-p-~~D~i~~~~vl~~-~~~-----~~~~~~L~~~~~~L~p 283 (359)
+.+ +. + .+|+|++.-=.-. ... .-..++++++.+++++
T Consensus 97 ~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 97 ARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred hhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 965 32 2 4899998633211 111 1224567888888886
No 238
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=96.48 E-value=0.043 Score=45.77 Aligned_cols=140 Identities=16% Similarity=0.147 Sum_probs=84.5
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeecccccccCC-----------C--CCCceEeeCCCCC-CCC-CccE
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDLPHVVPKVP-----------D--TDNLKFIAGDMFQ-SIP-PADA 255 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~-----------~--~~~v~~~~~d~~~-~~p-~~D~ 255 (359)
+++..+|+|+=.|.|.++..++... |.-.++.+=..+....+. + ..+++.+-.+... ..| +.|+
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d~ 125 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLDL 125 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCcccc
Confidence 6788999999999999999887754 443555543323322211 1 2344444444432 122 3666
Q ss_pred EEEcchhccC-----CchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHH
Q 018205 256 FFFKAIFHAF-----VDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKE 330 (359)
Q Consensus 256 i~~~~vl~~~-----~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~ 330 (359)
++....-|.+ ......++-+.+++.||| ||.++|.|.......+.. ..... ..++...
T Consensus 126 ~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKP---GGv~~V~dH~a~pG~~~~---dt~~~-----------~ri~~a~ 188 (238)
T COG4798 126 VPTAQNYHDMHNKNIHPATAAKVNAAVFKALKP---GGVYLVEDHRADPGSGLS---DTITL-----------HRIDPAV 188 (238)
T ss_pred cccchhhhhhhccccCcchHHHHHHHHHHhcCC---CcEEEEEeccccCCCChh---hhhhh-----------cccChHH
Confidence 6653333222 234566799999999999 898888887766544321 11100 1235677
Q ss_pred HHHHHHHcCCceeEEEEe
Q 018205 331 WEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 331 ~~~ll~~aGf~~~~~~~~ 348 (359)
..+..+.+||+..--..+
T Consensus 189 V~a~veaaGFkl~aeS~i 206 (238)
T COG4798 189 VIAEVEAAGFKLEAESEI 206 (238)
T ss_pred HHHHHHhhcceeeeeehh
Confidence 788889999997655444
No 239
>TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family. Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU.
Probab=96.41 E-value=0.0028 Score=56.25 Aligned_cols=56 Identities=18% Similarity=0.260 Sum_probs=47.2
Q ss_pred cCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccc
Q 018205 38 LDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTS 105 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~ 105 (359)
+.|++.+...+.+.|+.|||+++|+ +...+.|+|..|+..|+++++ +++|++.+..
T Consensus 12 l~IL~~l~~~~~~~~l~eia~~lgl---pksT~~RlL~tL~~~G~l~~~---------~~~Y~lG~~~ 67 (248)
T TIGR02431 12 LAVIEAFGAERPRLTLTDVAEATGL---TRAAARRFLLTLVELGYVTSD---------GRLFWLTPRV 67 (248)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeC---------CCEEEecHHH
Confidence 4566777654478999999999999 789999999999999999875 4889998754
No 240
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.39 E-value=0.065 Score=45.72 Aligned_cols=86 Identities=12% Similarity=0.182 Sum_probs=66.7
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCC-------CCCCceEeeCCCCCCCC---CccEEEEcchh
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVP-------DTDNLKFIAGDMFQSIP---PADAFFFKAIF 262 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-------~~~~v~~~~~d~~~~~p---~~D~i~~~~vl 262 (359)
...++.||||-++.+...|.+.++...++..|+ +..++.|. ..++++...+|-+..+. .+|+++...+
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGM- 94 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGM- 94 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCC-
Confidence 445699999999999999999999999999999 44665554 36789999999876542 3898887654
Q ss_pred ccCCchHHHHHHHHHHHhccc
Q 018205 263 HAFVDEDCLKILKRCREAIAS 283 (359)
Q Consensus 263 ~~~~~~~~~~~L~~~~~~L~p 283 (359)
.-.-...+|.+-.+-|+.
T Consensus 95 ---GG~lI~~ILee~~~~l~~ 112 (226)
T COG2384 95 ---GGTLIREILEEGKEKLKG 112 (226)
T ss_pred ---cHHHHHHHHHHhhhhhcC
Confidence 334566788888888873
No 241
>COG1414 IclR Transcriptional regulator [Transcription]
Probab=96.38 E-value=0.0029 Score=56.03 Aligned_cols=58 Identities=19% Similarity=0.343 Sum_probs=47.5
Q ss_pred cCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccc
Q 018205 38 LDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTS 105 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~ 105 (359)
+.|++.|...+.++++.|||+++|+ +...++|+|..|++.|+++++.. +++|++++..
T Consensus 7 l~iL~~l~~~~~~l~l~ela~~~gl---pksT~~RlL~tL~~~G~v~~d~~-------~g~Y~Lg~~~ 64 (246)
T COG1414 7 LAILDLLAEGPGGLSLAELAERLGL---PKSTVHRLLQTLVELGYVEQDPE-------DGRYRLGPRL 64 (246)
T ss_pred HHHHHHHHhCCCCCCHHHHHHHhCc---CHHHHHHHHHHHHHCCCEEEcCC-------CCcEeehHHH
Confidence 4567777763344679999999999 68999999999999999999862 4689998754
No 242
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=96.34 E-value=0.0019 Score=60.54 Aligned_cols=51 Identities=20% Similarity=0.361 Sum_probs=41.1
Q ss_pred CeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCC
Q 018205 196 GSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQ 248 (359)
Q Consensus 196 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~ 248 (359)
.+|||++||+|.++..+++.. .+++++|.+. +++.|++ ..+++++.+|..+
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~--~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~ 265 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF--RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE 265 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence 579999999999999998875 3799999954 8876662 3478899988743
No 243
>PRK11569 transcriptional repressor IclR; Provisional
Probab=96.33 E-value=0.0033 Score=56.64 Aligned_cols=58 Identities=16% Similarity=0.275 Sum_probs=47.2
Q ss_pred cCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccc
Q 018205 38 LDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTS 105 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~ 105 (359)
+.|++.|.+.+++.|+.|||+.+|+ ++..+.|+|..|+..|+++++.. .++|++.+..
T Consensus 31 l~IL~~l~~~~~~~~lseia~~lgl---pksTv~RlL~tL~~~G~l~~~~~-------~~~Y~lG~~l 88 (274)
T PRK11569 31 LKLLEWIAESNGSVALTELAQQAGL---PNSTTHRLLTTMQQQGFVRQVGE-------LGHWAIGAHA 88 (274)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEcCC-------CCeEecCHHH
Confidence 3455566554478999999999999 78999999999999999987642 5889988754
No 244
>PRK10163 DNA-binding transcriptional repressor AllR; Provisional
Probab=96.33 E-value=0.0035 Score=56.41 Aligned_cols=58 Identities=16% Similarity=0.303 Sum_probs=47.4
Q ss_pred cCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccc
Q 018205 38 LDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTS 105 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~ 105 (359)
+.|++.+...+++.|+.|||+++|+ ++..+.|+|+.|+..|++.++.. .++|+++...
T Consensus 28 l~IL~~~~~~~~~~tl~eIa~~lgl---pkStv~RlL~tL~~~G~l~~~~~-------~~~Y~lG~~l 85 (271)
T PRK10163 28 IAILQYLEKSGGSSSVSDISLNLDL---PLSTTFRLLKVLQAADFVYQDSQ-------LGWWHIGLGV 85 (271)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEcCC-------CCeEEecHHH
Confidence 4456666654468999999999999 78999999999999999988642 5789988753
No 245
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp. (strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.
Probab=96.28 E-value=0.0068 Score=43.88 Aligned_cols=49 Identities=18% Similarity=0.362 Sum_probs=39.7
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccccc
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSK 106 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~ 106 (359)
++.|.+|||+++++ ++..++++++.|...|+++..++ ..|.|.+++..+
T Consensus 24 ~~~s~~eiA~~~~i---~~~~l~kil~~L~~~Gli~s~~G------~~GGy~L~~~~~ 72 (83)
T PF02082_consen 24 KPVSSKEIAERLGI---SPSYLRKILQKLKKAGLIESSRG------RGGGYRLARPPE 72 (83)
T ss_dssp C-BEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEETS------TTSEEEESS-CC
T ss_pred CCCCHHHHHHHHCc---CHHHHHHHHHHHhhCCeeEecCC------CCCceeecCCHH
Confidence 46999999999999 78999999999999999987652 148899887543
No 246
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.25 E-value=0.013 Score=50.19 Aligned_cols=98 Identities=20% Similarity=0.228 Sum_probs=72.0
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCC-CCeEEEeeccc-ccccC-------CCCCCceEeeCCCCCCC---------CCccE
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFP-GIKCTVLDLPH-VVPKV-------PDTDNLKFIAGDMFQSI---------PPADA 255 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~-~~~~a-------~~~~~v~~~~~d~~~~~---------p~~D~ 255 (359)
++++.+|||.=+|.-+..++...| +-+++.+|++. ..+.+ .....|+++.++..+.+ ..||.
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf 152 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF 152 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence 479999999999999999988887 46899999943 44433 34788999999885432 13898
Q ss_pred EEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCC
Q 018205 256 FFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEK 300 (359)
Q Consensus 256 i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~ 300 (359)
+|. .++.+.- .....++.+++++ |.+++++.+...+
T Consensus 153 aFv----DadK~nY-~~y~e~~l~Llr~----GGvi~~DNvl~~G 188 (237)
T KOG1663|consen 153 AFV----DADKDNY-SNYYERLLRLLRV----GGVIVVDNVLWPG 188 (237)
T ss_pred EEE----ccchHHH-HHHHHHHHhhccc----ccEEEEeccccCC
Confidence 884 4454443 3789999999999 5566777655443
No 247
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.25 E-value=0.058 Score=46.61 Aligned_cols=149 Identities=11% Similarity=0.134 Sum_probs=93.3
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc--ccccCCCCCCceEeeC-CCCC----CCC-Cc
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH--VVPKVPDTDNLKFIAG-DMFQ----SIP-PA 253 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~--~~~~a~~~~~v~~~~~-d~~~----~~p-~~ 253 (359)
...++.|+ ...++..+||||+.||.++..++++. -.+++++|... ..-..+..+|+..+.. |+.. .+. ..
T Consensus 68 ~~ale~F~-l~~k~kv~LDiGsSTGGFTd~lLq~g-Ak~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~ 145 (245)
T COG1189 68 EKALEEFE-LDVKGKVVLDIGSSTGGFTDVLLQRG-AKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKP 145 (245)
T ss_pred HHHHHhcC-cCCCCCEEEEecCCCccHHHHHHHcC-CcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCC
Confidence 34556665 33577999999999999999999974 33799999843 4445666778866665 4422 122 36
Q ss_pred cEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEE-EeeecCCCCcchHHHHHHHhhhhh-hhhhcCCcccCHHHH
Q 018205 254 DAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVII-IDIVINEKKEDAQLTEAKLLYDML-MMVAVRGSERTEKEW 331 (359)
Q Consensus 254 D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~t~~~~ 331 (359)
|+++|--.|- ....+|-.+...+++ ++.++. +-+.+...... ..-. ...-......-..++
T Consensus 146 d~~v~DvSFI-----SL~~iLp~l~~l~~~---~~~~v~LvKPQFEagr~~---------v~kkGvv~d~~~~~~v~~~i 208 (245)
T COG1189 146 DLIVIDVSFI-----SLKLILPALLLLLKD---GGDLVLLVKPQFEAGREQ---------VGKKGVVRDPKLHAEVLSKI 208 (245)
T ss_pred CeEEEEeehh-----hHHHHHHHHHHhcCC---CceEEEEecchhhhhhhh---------cCcCceecCcchHHHHHHHH
Confidence 7888755542 235689999999998 554443 44333322110 0000 000001123356788
Q ss_pred HHHHHHcCCceeEEEEeC
Q 018205 332 EKLFLDAGFSHFKITPVY 349 (359)
Q Consensus 332 ~~ll~~aGf~~~~~~~~~ 349 (359)
.+++.+.||++..+...+
T Consensus 209 ~~~~~~~g~~~~gl~~Sp 226 (245)
T COG1189 209 ENFAKELGFQVKGLIKSP 226 (245)
T ss_pred HHHHhhcCcEEeeeEccC
Confidence 899999999998887663
No 248
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.20 E-value=0.014 Score=50.01 Aligned_cols=132 Identities=14% Similarity=0.191 Sum_probs=85.8
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeeccc-----ccccCCCCCCceEeeCCCCCC------CCCccEEEEc
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDLPH-----VVPKVPDTDNLKFIAGDMFQS------IPPADAFFFK 259 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~-----~~~~a~~~~~v~~~~~d~~~~------~p~~D~i~~~ 259 (359)
+.+..+||-+|.++|.+...++..- |+-.+.+++.+. .+..|+...+|-.+-.|...| .+.+|+|++-
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~D 150 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQD 150 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEEE
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEec
Confidence 6778999999999999999999875 467899999843 445666788999999998653 2348988863
Q ss_pred chhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCc-chHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHc
Q 018205 260 AIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKE-DAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDA 338 (359)
Q Consensus 260 ~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~a 338 (359)
-. ..++..-++.++...||+ ||.+++.--...-... ++ . ..+ .++ .+.|++.
T Consensus 151 Va----Qp~Qa~I~~~Na~~fLk~---gG~~~i~iKa~siD~t~~p---~--~vf--------------~~e-~~~L~~~ 203 (229)
T PF01269_consen 151 VA----QPDQARIAALNARHFLKP---GGHLIISIKARSIDSTADP---E--EVF--------------AEE-VKKLKEE 203 (229)
T ss_dssp -S----STTHHHHHHHHHHHHEEE---EEEEEEEEEHHHH-SSSSH---H--HHH--------------HHH-HHHHHCT
T ss_pred CC----ChHHHHHHHHHHHhhccC---CcEEEEEEecCcccCcCCH---H--HHH--------------HHH-HHHHHHc
Confidence 32 234556688899999999 8888875432211110 00 0 000 122 3556788
Q ss_pred CCceeEEEEeCC
Q 018205 339 GFSHFKITPVYG 350 (359)
Q Consensus 339 Gf~~~~~~~~~~ 350 (359)
||++.+...+..
T Consensus 204 ~~~~~e~i~LeP 215 (229)
T PF01269_consen 204 GFKPLEQITLEP 215 (229)
T ss_dssp TCEEEEEEE-TT
T ss_pred CCChheEeccCC
Confidence 999999988843
No 249
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.18 E-value=0.03 Score=50.87 Aligned_cols=147 Identities=17% Similarity=0.237 Sum_probs=92.9
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCC-CCeEEEeecccccccCC----C-----CCCceEeeCCCCC-CCC------Ccc--
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFP-GIKCTVLDLPHVVPKVP----D-----TDNLKFIAGDMFQ-SIP------PAD-- 254 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~----~-----~~~v~~~~~d~~~-~~p------~~D-- 254 (359)
+...||-+|||--.-+-.+- .| ++++.-+|.|++++.=+ + ..++++++.|+++ +.+ +||
T Consensus 92 g~~qvViLgaGLDTRayRl~--~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~ 169 (297)
T COG3315 92 GIRQVVILGAGLDTRAYRLD--WPKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRS 169 (297)
T ss_pred cccEEEEeccccccceeecC--CCCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcC
Confidence 36889999998765444432 33 57888899999776322 2 3489999999984 433 355
Q ss_pred ---EEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee-cCCCCcch-HHHHHHHhhhhhhh-hhcCCcccCH
Q 018205 255 ---AFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIV-INEKKEDA-QLTEAKLLYDMLMM-VAVRGSERTE 328 (359)
Q Consensus 255 ---~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~-~~~~~~~~-~~~~~~~~~~~~~~-~~~~g~~~t~ 328 (359)
++++-.++.+++.+...++|..|...+.| |..++.+.. ........ .............. ...-......
T Consensus 170 ~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~----gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 245 (297)
T COG3315 170 RPTLWIAEGLLMYLPEEAVDRLLSRIAALSAP----GSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGELVYFGDDP 245 (297)
T ss_pred CCeEEEeccccccCCHHHHHHHHHHHHHhCCC----CceEEEeccccHHHHhcccchhhhhhccccccccccceeccCCH
Confidence 68888999999999999999999999998 555555553 11111000 00000000000000 0000122458
Q ss_pred HHHHHHHHHcCCceeEEE
Q 018205 329 KEWEKLFLDAGFSHFKIT 346 (359)
Q Consensus 329 ~~~~~ll~~aGf~~~~~~ 346 (359)
.++..++.+.||......
T Consensus 246 ~e~~~~l~~~g~~~~~~~ 263 (297)
T COG3315 246 AEIETWLAERGWRSTLNR 263 (297)
T ss_pred HHHHHHHHhcCEEEEecC
Confidence 999999999999987763
No 250
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=96.15 E-value=0.0045 Score=57.64 Aligned_cols=100 Identities=18% Similarity=0.204 Sum_probs=76.4
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC-------CCCCceEeeCCCCC-CCCC--ccEEEEcchh
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP-------DTDNLKFIAGDMFQ-SIPP--ADAFFFKAIF 262 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~-------~~~~v~~~~~d~~~-~~p~--~D~i~~~~vl 262 (359)
+...++|+|||.|.....+.. +..+.++++|... -+..+. ..+...++..|+.. ++++ ||.+-+..+.
T Consensus 110 ~~~~~~~~~~g~~~~~~~i~~-f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~ 188 (364)
T KOG1269|consen 110 PGSKVLDVGTGVGGPSRYIAV-FKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVV 188 (364)
T ss_pred ccccccccCcCcCchhHHHHH-hccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeec
Confidence 445899999999999988766 4567899999843 333332 24555668889866 4553 9999999999
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 018205 263 HAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINE 299 (359)
Q Consensus 263 ~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~ 299 (359)
.|.++. ..++++++++++| ||..++.+.+...
T Consensus 189 ~~~~~~--~~~y~Ei~rv~kp---GG~~i~~e~i~~~ 220 (364)
T KOG1269|consen 189 CHAPDL--EKVYAEIYRVLKP---GGLFIVKEWIKTA 220 (364)
T ss_pred ccCCcH--HHHHHHHhcccCC---CceEEeHHHHHhh
Confidence 999877 4599999999999 8888887766543
No 251
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=96.13 E-value=0.0034 Score=50.45 Aligned_cols=51 Identities=12% Similarity=0.197 Sum_probs=40.5
Q ss_pred eEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCCC------CCCceEeeCCCC
Q 018205 197 SLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVPD------TDNLKFIAGDMF 247 (359)
Q Consensus 197 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~ 247 (359)
+++|||||.|.++..+++.+|+.+++++|+ |.+.+.++. ..+++++...+.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~ 58 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVG 58 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeee
Confidence 489999999999999999999999999999 556665442 245777776664
No 252
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=96.12 E-value=0.011 Score=54.22 Aligned_cols=99 Identities=17% Similarity=0.246 Sum_probs=64.0
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHH-------CCCCeEEEeecc-cccccCC--------CCCCceEeeCCCCCC--CC--
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEA-------FPGIKCTVLDLP-HVVPKVP--------DTDNLKFIAGDMFQS--IP-- 251 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~-------~p~~~~~~~D~~-~~~~~a~--------~~~~v~~~~~d~~~~--~p-- 251 (359)
.....+|+|-.||+|.++..+.+. .+..+++|+|+. .++..|+ ......+..+|.+.. ..
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~ 123 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKN 123 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 345678999999999999888774 367899999994 4555443 133345888888652 22
Q ss_pred -CccEEEEcc--hhccC------------------CchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 252 -PADAFFFKA--IFHAF------------------VDEDCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 252 -~~D~i~~~~--vl~~~------------------~~~~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
.||+|+++- ....| ...+ ..++.++.+.|++ +|++.++-
T Consensus 124 ~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Fi~~~l~~Lk~---~G~~~~Il 183 (311)
T PF02384_consen 124 QKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAE-YAFIEHALSLLKP---GGRAAIIL 183 (311)
T ss_dssp --EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHH-HHHHHHHHHTEEE---EEEEEEEE
T ss_pred cccccccCCCCccccccccccccccccccccCCCccchh-hhhHHHHHhhccc---ccceeEEe
Confidence 499999752 22201 1112 2488999999999 89877654
No 253
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.07 E-value=0.015 Score=57.52 Aligned_cols=66 Identities=9% Similarity=0.119 Sum_probs=45.4
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCC--------CeEEEeeccc-ccccCCC------CCCceEeeCCCCCC--------C
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPG--------IKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQS--------I 250 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~--------~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~~--------~ 250 (359)
...+|+|.|||+|.++..+++..+. ..++++|+.. .+..++. ...+.+...|+... .
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 4579999999999999999887642 5689999944 6554431 12455666665321 2
Q ss_pred CCccEEEEc
Q 018205 251 PPADAFFFK 259 (359)
Q Consensus 251 p~~D~i~~~ 259 (359)
+.||+|+.+
T Consensus 111 ~~fD~IIgN 119 (524)
T TIGR02987 111 DLFDIVITN 119 (524)
T ss_pred CcccEEEeC
Confidence 359999975
No 254
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=96.06 E-value=0.031 Score=57.28 Aligned_cols=100 Identities=13% Similarity=0.163 Sum_probs=66.1
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHC----C--------------------------------------CCeEEEeecc-cc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAF----P--------------------------------------GIKCTVLDLP-HV 229 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~----p--------------------------------------~~~~~~~D~~-~~ 229 (359)
.+...++|-+||+|++++..+... | ..+++|+|+. .+
T Consensus 189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a 268 (702)
T PRK11783 189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV 268 (702)
T ss_pred CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence 346899999999999998876531 1 2368999994 58
Q ss_pred cccCCC-------CCCceEeeCCCCC-CCC----CccEEEEcchh-ccCC-chHHHHHHHHHHHhcc---cCCCCcEEEE
Q 018205 230 VPKVPD-------TDNLKFIAGDMFQ-SIP----PADAFFFKAIF-HAFV-DEDCLKILKRCREAIA---SRGDRGKVII 292 (359)
Q Consensus 230 ~~~a~~-------~~~v~~~~~d~~~-~~p----~~D~i~~~~vl-~~~~-~~~~~~~L~~~~~~L~---p~~~gG~lli 292 (359)
++.|+. .+++.+..+|+.+ +.+ .+|+|+++-=. ..+. ..+...+.+++.+.++ + |+.+++
T Consensus 269 v~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~---g~~~~l 345 (702)
T PRK11783 269 IQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFG---GWNAAL 345 (702)
T ss_pred HHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCC---CCeEEE
Confidence 887762 4568999999965 222 38999986222 1122 2344445555555554 5 777777
Q ss_pred Eee
Q 018205 293 IDI 295 (359)
Q Consensus 293 ~~~ 295 (359)
+..
T Consensus 346 lt~ 348 (702)
T PRK11783 346 FSS 348 (702)
T ss_pred EeC
Confidence 664
No 255
>PHA00738 putative HTH transcription regulator
Probab=96.04 E-value=0.007 Score=45.26 Aligned_cols=48 Identities=13% Similarity=0.267 Sum_probs=42.4
Q ss_pred HhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 36 VELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
.+..|++.|.. +++.++.+|++.+++ .++.+.+.|+.|...|||....
T Consensus 13 tRr~IL~lL~~-~e~~~V~eLae~l~l---SQptVS~HLKvLreAGLV~srK 60 (108)
T PHA00738 13 LRRKILELIAE-NYILSASLISHTLLL---SYTTVLRHLKILNEQGYIELYK 60 (108)
T ss_pred HHHHHHHHHHH-cCCccHHHHHHhhCC---CHHHHHHHHHHHHHCCceEEEE
Confidence 56778888876 347999999999999 7899999999999999999876
No 256
>PRK09834 DNA-binding transcriptional activator MhpR; Provisional
Probab=96.03 E-value=0.0061 Score=54.61 Aligned_cols=59 Identities=15% Similarity=0.296 Sum_probs=47.8
Q ss_pred cCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccccc
Q 018205 38 LDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSK 106 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~ 106 (359)
+.|++.|...+++.|+.||++.+|+ +...+.|+|+.|++.|++++... ++.|++++...
T Consensus 14 l~iL~~l~~~~~~ls~~eia~~lgl---~kstv~RlL~tL~~~g~v~~~~~-------~~~Y~Lg~~~~ 72 (263)
T PRK09834 14 LMVLRALNRLDGGATVGLLAELTGL---HRTTVRRLLETLQEEGYVRRSAS-------DDSFRLTLKVR 72 (263)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEecC-------CCcEEEcHHHH
Confidence 4456666554457999999999999 78999999999999999998742 57899987543
No 257
>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family.
Probab=96.00 E-value=0.03 Score=38.33 Aligned_cols=44 Identities=16% Similarity=0.317 Sum_probs=38.6
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccc
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTL 103 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~ 103 (359)
.++|..+||+.+|+ +...+.+.|+.|...|++.... .+.|.+++
T Consensus 24 ~~~s~~ela~~~g~---s~~tv~r~l~~L~~~g~i~~~~--------~~~~~l~~ 67 (67)
T cd00092 24 LPLTRQEIADYLGL---TRETVSRTLKELEEEGLISRRG--------RGKYRVNP 67 (67)
T ss_pred CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecC--------CCeEEeCC
Confidence 68999999999999 6899999999999999999873 37787764
No 258
>PRK15090 DNA-binding transcriptional regulator KdgR; Provisional
Probab=95.96 E-value=0.0067 Score=54.13 Aligned_cols=56 Identities=18% Similarity=0.409 Sum_probs=45.8
Q ss_pred CcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccc
Q 018205 39 DIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTS 105 (359)
Q Consensus 39 glf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~ 105 (359)
.|++.|... ++.|+.|||+.+|+ +...+.|+|+.|+..|++++... .++|++.+..
T Consensus 18 ~IL~~l~~~-~~l~l~eia~~lgl---~kstv~Rll~tL~~~G~l~~~~~-------~~~Y~lG~~~ 73 (257)
T PRK15090 18 GILQALGEE-REIGITELSQRVMM---SKSTVYRFLQTMKTLGYVAQEGE-------SEKYSLTLKL 73 (257)
T ss_pred HHHHHhhcC-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEcCC-------CCcEEecHHH
Confidence 345555543 58999999999999 78999999999999999998642 5889998754
No 259
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=95.94 E-value=0.093 Score=46.18 Aligned_cols=117 Identities=17% Similarity=0.299 Sum_probs=78.6
Q ss_pred HHHHHhhcccch-----HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeeccc-ccccCCC-------
Q 018205 170 YNQAMASDSQLA-----NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDLPH-VVPKVPD------- 235 (359)
Q Consensus 170 ~~~~m~~~~~~~-----~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~-~~~~a~~------- 235 (359)
|-.+|...++.. ..++..++ ..+..+||+-|.|+|.++.++++.- |.-+++-+|.-+ -.+.|.+
T Consensus 78 WTl~LphRTQI~Yt~Dia~I~~~L~--i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi 155 (314)
T KOG2915|consen 78 WTLALPHRTQILYTPDIAMILSMLE--IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI 155 (314)
T ss_pred hhhhccCcceEEecccHHHHHHHhc--CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC
Confidence 334454444432 45566676 7788999999999999999999875 777899999844 4444432
Q ss_pred CCCceEeeCCCCC-CCC----CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 018205 236 TDNLKFIAGDMFQ-SIP----PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVI 297 (359)
Q Consensus 236 ~~~v~~~~~d~~~-~~p----~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~ 297 (359)
.+++++...|+-. -++ .+|.|++ +++.+ ...+-.++++|+.. ||++..+.++.
T Consensus 156 ~~~vt~~hrDVc~~GF~~ks~~aDaVFL-----DlPaP--w~AiPha~~~lk~~--g~r~csFSPCI 213 (314)
T KOG2915|consen 156 GDNVTVTHRDVCGSGFLIKSLKADAVFL-----DLPAP--WEAIPHAAKILKDE--GGRLCSFSPCI 213 (314)
T ss_pred CcceEEEEeecccCCccccccccceEEE-----cCCCh--hhhhhhhHHHhhhc--CceEEeccHHH
Confidence 6789999998833 222 3898886 44433 23566677788871 55666655443
No 260
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=95.93 E-value=0.0028 Score=43.97 Aligned_cols=47 Identities=17% Similarity=0.335 Sum_probs=39.4
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
+..++..|... ++.|+++||+.+|+ +...+.+.|+-|...|+++...
T Consensus 10 E~~vy~~Ll~~-~~~t~~eIa~~l~i---~~~~v~~~L~~L~~~GlV~~~~ 56 (68)
T PF01978_consen 10 EAKVYLALLKN-GPATAEEIAEELGI---SRSTVYRALKSLEEKGLVEREE 56 (68)
T ss_dssp HHHHHHHHHHH-CHEEHHHHHHHHTS---SHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEc
Confidence 44455555432 79999999999999 7899999999999999999885
No 261
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=95.92 E-value=0.0051 Score=51.79 Aligned_cols=97 Identities=14% Similarity=0.195 Sum_probs=63.9
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCC-------CCCCceEeeCCCCCC-------CCCccEEEE
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVP-------DTDNLKFIAGDMFQS-------IPPADAFFF 258 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~-------~~~~v~~~~~d~~~~-------~p~~D~i~~ 258 (359)
...++||+=||+|.++...+.+. -.+++.+|.+ ..+...+ ..++++++..|.+.. ...||+|++
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 47999999999999999988884 3489999994 3555444 245688999996432 124999997
Q ss_pred cchhccCCchH-HHHHHHHHH--HhcccCCCCcEEEEEeeecC
Q 018205 259 KAIFHAFVDED-CLKILKRCR--EAIASRGDRGKVIIIDIVIN 298 (359)
Q Consensus 259 ~~vl~~~~~~~-~~~~L~~~~--~~L~p~~~gG~lli~~~~~~ 298 (359)
-==. .... ..+++..+. .+|++ +.++|+|....
T Consensus 121 DPPY---~~~~~~~~~l~~l~~~~~l~~----~~~ii~E~~~~ 156 (183)
T PF03602_consen 121 DPPY---AKGLYYEELLELLAENNLLNE----DGLIIIEHSKK 156 (183)
T ss_dssp --ST---TSCHHHHHHHHHHHHTTSEEE----EEEEEEEEETT
T ss_pred CCCc---ccchHHHHHHHHHHHCCCCCC----CEEEEEEecCC
Confidence 4322 1222 356777776 78887 66777777655
No 262
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=95.91 E-value=0.0082 Score=54.05 Aligned_cols=98 Identities=17% Similarity=0.227 Sum_probs=67.2
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC--------CCCceEeeCCCCCC------CCCccEEEE
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD--------TDNLKFIAGDMFQS------IPPADAFFF 258 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~--------~~~v~~~~~d~~~~------~p~~D~i~~ 258 (359)
..++|||+=|=+|.++...+... -.+++.+|.+. .++.+++ ..++++++.|+++. ...||+|++
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gG-A~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGG-AKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTT-ESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 46899999999999999877642 34799999976 8877762 46899999999752 225999995
Q ss_pred c---chhccCC-chHHHHHHHHHHHhcccCCCCcEEEEEee
Q 018205 259 K---AIFHAFV-DEDCLKILKRCREAIASRGDRGKVIIIDI 295 (359)
Q Consensus 259 ~---~vl~~~~-~~~~~~~L~~~~~~L~p~~~gG~lli~~~ 295 (359)
- +.=..+. ..+..++++.+.++|+| ||.++.+..
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~---gG~l~~~sc 239 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKP---GGLLLTCSC 239 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEE---EEEEEEEE-
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCC---CCEEEEEcC
Confidence 2 1100111 23456799999999999 777766553
No 263
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=95.90 E-value=0.0061 Score=41.94 Aligned_cols=58 Identities=14% Similarity=0.302 Sum_probs=44.7
Q ss_pred cchhcccCCCCCCHHHHHHhcCCCCCC--cccHHHHHHHHHccCceeeecccccccCccceEeccccc
Q 018205 40 IPEVIHKHGRPITLPQLVSALEINPTK--ADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTS 105 (359)
Q Consensus 40 lf~~L~~~~~~~t~~ela~~~~~~~~~--~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~ 105 (359)
|++.|.+.++|++..+|++.+.....+ ++.++|.|++|...|++.+.+ .+.+.+|+.+
T Consensus 3 IL~~L~~~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~Glt~~~g--------~~G~~iT~~G 62 (66)
T PF08461_consen 3 ILRILAESDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDGLTRKVG--------RQGRIITEKG 62 (66)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCCCccccC--------CcccccCHHH
Confidence 456777767899999999999765434 488999999999999887664 3556677654
No 264
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=95.83 E-value=0.0078 Score=54.13 Aligned_cols=101 Identities=21% Similarity=0.339 Sum_probs=70.5
Q ss_pred CCeEEEeCCCcchHHHHHHHHC--------------------CCCeEEEeecc---cccccCC-----------------
Q 018205 195 LGSLVDVGGGTGSFARIISEAF--------------------PGIKCTVLDLP---HVVPKVP----------------- 234 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~--------------------p~~~~~~~D~~---~~~~~a~----------------- 234 (359)
..+||-||||.|.=..+++..+ +.++++.+|+. .++....
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 4799999999987555555444 23689999992 2553221
Q ss_pred ------CCCCceEeeCCCCCC-C---------CCccEEEEcchhccC---CchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 018205 235 ------DTDNLKFIAGDMFQS-I---------PPADAFFFKAIFHAF---VDEDCLKILKRCREAIASRGDRGKVIIIDI 295 (359)
Q Consensus 235 ------~~~~v~~~~~d~~~~-~---------p~~D~i~~~~vl~~~---~~~~~~~~L~~~~~~L~p~~~gG~lli~~~ 295 (359)
..-+++|.+.|++.. . |..|+|.+.+.+..+ ...+..++|.++...++| |..++|+|.
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~---GslLLVvDS 243 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPP---GSLLLVVDS 243 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCC---CcEEEEEcC
Confidence 123678899998752 1 236777776666542 355667899999999999 888999886
Q ss_pred ecC
Q 018205 296 VIN 298 (359)
Q Consensus 296 ~~~ 298 (359)
...
T Consensus 244 pGS 246 (315)
T PF11312_consen 244 PGS 246 (315)
T ss_pred CCC
Confidence 644
No 265
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=95.80 E-value=0.061 Score=49.28 Aligned_cols=99 Identities=15% Similarity=0.126 Sum_probs=70.9
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeC-CCCC-CCCC--ccEEEEcc
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAG-DMFQ-SIPP--ADAFFFKA 260 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~-d~~~-~~p~--~D~i~~~~ 260 (359)
...+..|||==||||.+++...-. +++++|.|+.. |++-|+. -....+... |+.. ++++ +|.|++--
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDP 272 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDP 272 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecC
Confidence 456789999999999999998766 88999999976 8888873 123434444 7744 5665 99988521
Q ss_pred h------hccCC-chHHHHHHHHHHHhcccCCCCcEEEEEee
Q 018205 261 I------FHAFV-DEDCLKILKRCREAIASRGDRGKVIIIDI 295 (359)
Q Consensus 261 v------l~~~~-~~~~~~~L~~~~~~L~p~~~gG~lli~~~ 295 (359)
- ..--. ++-..++|+.+++.|++ ||.+++..+
T Consensus 273 PYGrst~~~~~~l~~Ly~~~le~~~evLk~---gG~~vf~~p 311 (347)
T COG1041 273 PYGRSTKIKGEGLDELYEEALESASEVLKP---GGRIVFAAP 311 (347)
T ss_pred CCCcccccccccHHHHHHHHHHHHHHHhhc---CcEEEEecC
Confidence 1 11111 34457899999999999 888887554
No 266
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=95.79 E-value=0.004 Score=47.26 Aligned_cols=89 Identities=22% Similarity=0.343 Sum_probs=38.3
Q ss_pred EEeCCCcchHHHHHHHHCCCC---eEEEeeccc----ccccCC---CCCCceEeeCCCCCC---CC--CccEEEEcchhc
Q 018205 199 VDVGGGTGSFARIISEAFPGI---KCTVLDLPH----VVPKVP---DTDNLKFIAGDMFQS---IP--PADAFFFKAIFH 263 (359)
Q Consensus 199 lDvG~G~G~~~~~l~~~~p~~---~~~~~D~~~----~~~~a~---~~~~v~~~~~d~~~~---~p--~~D~i~~~~vl~ 263 (359)
||||+..|..+..+++..+.. +++++|... .-+..+ ..++++++.++..+. ++ .+|+++.-. -|
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-DH 79 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-CC
Confidence 689999999988888776543 699999933 222222 256899999999542 22 589888743 23
Q ss_pred cCCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 018205 264 AFVDEDCLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 264 ~~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
.. +....-++.+.+.|+| ||.+++-
T Consensus 80 ~~--~~~~~dl~~~~~~l~~---ggviv~d 104 (106)
T PF13578_consen 80 SY--EAVLRDLENALPRLAP---GGVIVFD 104 (106)
T ss_dssp -H--HHHHHHHHHHGGGEEE---EEEEEEE
T ss_pred CH--HHHHHHHHHHHHHcCC---CeEEEEe
Confidence 22 4556688899999999 6655553
No 267
>PRK10857 DNA-binding transcriptional regulator IscR; Provisional
Probab=95.75 E-value=0.02 Score=47.24 Aligned_cols=48 Identities=21% Similarity=0.263 Sum_probs=40.9
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccc
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTS 105 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~ 105 (359)
++.|+++||+++++ +.+.+.++|+.|...||+...++ .+|.|.+.+..
T Consensus 24 ~~vs~~eIA~~~~i---p~~~l~kIl~~L~~aGLv~s~rG------~~GGy~Lar~p 71 (164)
T PRK10857 24 GPVPLADISERQGI---SLSYLEQLFSRLRKNGLVSSVRG------PGGGYLLGKDA 71 (164)
T ss_pred CcCcHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeCCC------CCCCeeccCCH
Confidence 68999999999999 78999999999999999997642 15789887643
No 268
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=95.74 E-value=0.0084 Score=44.90 Aligned_cols=32 Identities=28% Similarity=0.440 Sum_probs=26.6
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL 226 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~ 226 (359)
.+....+|+|||+|.+.--|.+. +.+..|+|.
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~ 88 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNSE--GYPGWGIDA 88 (112)
T ss_pred CCCCceEEccCCchHHHHHHHhC--CCCcccccc
Confidence 35678999999999998887766 667899997
No 269
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein.
Probab=95.70 E-value=0.02 Score=36.25 Aligned_cols=35 Identities=17% Similarity=0.353 Sum_probs=32.4
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeee
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTA 86 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~ 86 (359)
-++|..+||+.+|+ +...+.+.|+.|.+.|+++..
T Consensus 7 ~~~s~~~la~~l~~---s~~tv~~~l~~L~~~g~l~~~ 41 (48)
T smart00419 7 LPLTRQEIAELLGL---TRETVSRTLKRLEKEGLISRE 41 (48)
T ss_pred eccCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEe
Confidence 37899999999999 678999999999999999876
No 270
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=95.69 E-value=0.19 Score=47.26 Aligned_cols=73 Identities=22% Similarity=0.230 Sum_probs=45.6
Q ss_pred CCCeEEEeCCCcchHHHHH--------HHH-------CCCCeEEEeeccc--ccccCCC------------------CCC
Q 018205 194 GLGSLVDVGGGTGSFARII--------SEA-------FPGIKCTVLDLPH--VVPKVPD------------------TDN 238 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l--------~~~-------~p~~~~~~~D~~~--~~~~a~~------------------~~~ 238 (359)
+..+|+|+|||+|..+..+ .++ .|..++..-|+|. .-...+. ..+
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~ 142 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR 142 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence 4679999999999654332 222 2467888888863 1111110 001
Q ss_pred ---ceEeeCCCCC-CCCC--ccEEEEcchhccCC
Q 018205 239 ---LKFIAGDMFQ-SIPP--ADAFFFKAIFHAFV 266 (359)
Q Consensus 239 ---v~~~~~d~~~-~~p~--~D~i~~~~vl~~~~ 266 (359)
+.-+.|.|+. -+|. .+++++++.+|.++
T Consensus 143 ~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS 176 (386)
T PLN02668 143 SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLS 176 (386)
T ss_pred ceEEEecCccccccccCCCceEEEEeeccceecc
Confidence 2334567766 3563 89999999998775
No 271
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=95.65 E-value=0.0087 Score=38.24 Aligned_cols=44 Identities=18% Similarity=0.295 Sum_probs=36.4
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCcee
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFS 84 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~ 84 (359)
+..|+..|.+. +++|..|||+.+|+ ....+.+.++.|...|+++
T Consensus 5 ~~~Il~~l~~~-~~~t~~ela~~~~i---s~~tv~~~l~~L~~~g~I~ 48 (48)
T PF13412_consen 5 QRKILNYLREN-PRITQKELAEKLGI---SRSTVNRYLKKLEEKGLIE 48 (48)
T ss_dssp HHHHHHHHHHC-TTS-HHHHHHHHTS----HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHhCC---CHHHHHHHHHHHHHCcCcC
Confidence 45577778773 67999999999999 6899999999999999985
No 272
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.63 E-value=0.03 Score=53.56 Aligned_cols=90 Identities=21% Similarity=0.297 Sum_probs=63.1
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCCC------CCCceEeeCCCCC---CC---CCccEEEE
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVPD------TDNLKFIAGDMFQ---SI---PPADAFFF 258 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~---~~---p~~D~i~~ 258 (359)
..+..+|+|+=||.|.++..|+++ ..+++|+|+ +++++.|+. -++++|..++..+ .. ..+|.|+.
T Consensus 291 ~~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~Vvv 368 (432)
T COG2265 291 LAGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVV 368 (432)
T ss_pred hcCCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEE
Confidence 456789999999999999999965 568999999 458877762 4569999999854 12 14788886
Q ss_pred cchhccCCchHHH-HHHHHHHHhcccCCCCcEEEE
Q 018205 259 KAIFHAFVDEDCL-KILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 259 ~~vl~~~~~~~~~-~~L~~~~~~L~p~~~gG~lli 292 (359)
+-|+.-+. .+++.+.+.-.+ ..++|
T Consensus 369 -----DPPR~G~~~~~lk~l~~~~p~----~IvYV 394 (432)
T COG2265 369 -----DPPRAGADREVLKQLAKLKPK----RIVYV 394 (432)
T ss_pred -----CCCCCCCCHHHHHHHHhcCCC----cEEEE
Confidence 33333333 467776665443 55555
No 273
>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A.
Probab=95.59 E-value=0.0097 Score=42.39 Aligned_cols=55 Identities=20% Similarity=0.303 Sum_probs=41.5
Q ss_pred chhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccccccc
Q 018205 41 PEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFL 109 (359)
Q Consensus 41 f~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
+..+.. ++.+..+|+..+++ +...+.+.|+.|...|+++.. ++.|++|+.+..+.
T Consensus 12 L~~l~~--~~~~~t~i~~~~~L---~~~~~~~yL~~L~~~gLI~~~---------~~~Y~lTekG~~~l 66 (77)
T PF14947_consen 12 LKILSK--GGAKKTEIMYKANL---NYSTLKKYLKELEEKGLIKKK---------DGKYRLTEKGKEFL 66 (77)
T ss_dssp HHHH-T--T-B-HHHHHTTST-----HHHHHHHHHHHHHTTSEEEE---------TTEEEE-HHHHHHH
T ss_pred HHHHHc--CCCCHHHHHHHhCc---CHHHHHHHHHHHHHCcCeeCC---------CCEEEECccHHHHH
Confidence 344443 79999999999999 789999999999999999775 59999999887544
No 274
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A.
Probab=95.49 E-value=0.015 Score=40.12 Aligned_cols=51 Identities=20% Similarity=0.355 Sum_probs=36.7
Q ss_pred CCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCcc-ceEecccc
Q 018205 48 GRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEE-EAYALTLT 104 (359)
Q Consensus 48 ~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~-~~~~~t~~ 104 (359)
+++++..+|++.+++ +...+.+.++.|...|+|++... +.++. ..|++|+.
T Consensus 16 ~~~~t~~~l~~~~~~---~~~~vs~~i~~L~~~glv~~~~~---~~d~R~~~~~LT~~ 67 (68)
T PF13463_consen 16 DGPMTQSDLAERLGI---SKSTVSRIIKKLEEKGLVEKERD---PHDKRSKRYRLTPA 67 (68)
T ss_dssp TS-BEHHHHHHHTT-----HHHHHHHHHHHHHTTSEEEEEE---SSCTTSEEEEE-HH
T ss_pred CCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEecCC---CCcCCeeEEEeCCC
Confidence 379999999999999 78999999999999999977641 11212 34777764
No 275
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.47 E-value=0.03 Score=44.88 Aligned_cols=42 Identities=19% Similarity=0.323 Sum_probs=37.9
Q ss_pred CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 252 PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 252 ~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
+.|+|.+.+++.|++-++-...++.|++.|+| ||.+-|+-+-
T Consensus 47 s~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp---~G~LriAvPd 88 (185)
T COG4627 47 SVDAIYAEHVLEHLTYDEGTSALKECHRFLRP---GGKLRIAVPD 88 (185)
T ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHHhCc---CcEEEEEcCC
Confidence 49999999999999988889999999999999 8998886544
No 276
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.45 E-value=0.11 Score=46.61 Aligned_cols=148 Identities=14% Similarity=0.260 Sum_probs=97.3
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHC--CCCeEEEeeccccc-ccCC---C------------------------CCCceE
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAF--PGIKCTVLDLPHVV-PKVP---D------------------------TDNLKF 241 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~~~~~-~~a~---~------------------------~~~v~~ 241 (359)
..+...|+.+|||.-.+...|...+ +.++++=+|.|+++ .+.. . .++...
T Consensus 85 ~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~ 164 (335)
T KOG2918|consen 85 TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYHL 164 (335)
T ss_pred cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCceee
Confidence 4567899999999999999998887 67788888988743 3331 0 233444
Q ss_pred eeCCCCC--CCC------C-----ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHH
Q 018205 242 IAGDMFQ--SIP------P-----ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTE 308 (359)
Q Consensus 242 ~~~d~~~--~~p------~-----~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~ 308 (359)
...|..+ .+. + +-++++=-+|.++++++...+++.+.+..+. +.+++.|.+.+... ++.
T Consensus 165 ~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~----a~fv~YEQi~~~D~----Fg~ 236 (335)
T KOG2918|consen 165 IGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFEN----AHFVNYEQINPNDR----FGK 236 (335)
T ss_pred eccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCCc----ccEEEEeccCCCCh----HHH
Confidence 4444421 000 0 2245556778889989888999999999885 88999999885543 111
Q ss_pred HHHhhhhhhhhh-cCC--cccCHHHHHHHHHHcCCceeEEEEe
Q 018205 309 AKLLYDMLMMVA-VRG--SERTEKEWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 309 ~~~~~~~~~~~~-~~g--~~~t~~~~~~ll~~aGf~~~~~~~~ 348 (359)
. +.-++.-... ..| ..-|.+..+.-|.++||..+.+..+
T Consensus 237 v-M~~nlk~r~~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~Dm 278 (335)
T KOG2918|consen 237 V-MLANLKRRGCPLHGLETYNSIESQRSRFLKAGWEYVIAVDM 278 (335)
T ss_pred H-HHHHHHhcCCCCchhhhcccHHHHHHHHHhcCCceeehhhH
Confidence 0 1111110000 011 2347888999999999998887765
No 277
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=95.41 E-value=0.041 Score=51.71 Aligned_cols=91 Identities=15% Similarity=0.207 Sum_probs=67.0
Q ss_pred CCeEEEeCCCcchHHHHHHHHCCC-CeEEEeec-ccccccCCC------CCCceEeeCCCCCCC----CCccEEEEcchh
Q 018205 195 LGSLVDVGGGTGSFARIISEAFPG-IKCTVLDL-PHVVPKVPD------TDNLKFIAGDMFQSI----PPADAFFFKAIF 262 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~~----p~~D~i~~~~vl 262 (359)
..+|||.-||+|..++.++...++ -+++++|+ +..++.+++ ..++++..+|...-+ ..||+|.+-- +
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f 123 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F 123 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence 368999999999999999998654 47999999 456665542 235788888885421 3499998743 2
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 263 HAFVDEDCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 263 ~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
..+ ..++..+.+.+++ +|.+++..
T Consensus 124 ---Gs~--~~fld~al~~~~~---~glL~vTa 147 (374)
T TIGR00308 124 ---GTP--APFVDSAIQASAE---RGLLLVTA 147 (374)
T ss_pred ---CCc--HHHHHHHHHhccc---CCEEEEEe
Confidence 222 2489999999998 78888864
No 278
>PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A.
Probab=95.17 E-value=0.0032 Score=45.23 Aligned_cols=67 Identities=19% Similarity=0.272 Sum_probs=46.0
Q ss_pred HhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccccc
Q 018205 36 VELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKL 107 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~~ 107 (359)
++++|...|... +.+++.+|.+.+|+ +...|.+.|+.|+..|+++...... ..-..-.|++|+.++.
T Consensus 1 vRl~Il~~L~~~-~~~~f~~L~~~l~l---t~g~Ls~hL~~Le~~GyV~~~k~~~-~~~p~t~~~lT~~Gr~ 67 (80)
T PF13601_consen 1 VRLAILALLYAN-EEATFSELKEELGL---TDGNLSKHLKKLEEAGYVEVEKEFE-GRRPRTWYSLTDKGRE 67 (80)
T ss_dssp HHHHHHHHHHHH-SEEEHHHHHHHTT-----HHHHHHHHHHHHHTTSEEEEEE-S-SS--EEEEEE-HHHHH
T ss_pred CHHHHHHHHhhc-CCCCHHHHHHHhCc---CHHHHHHHHHHHHHCCCEEEEEecc-CCCCeEEEEECHHHHH
Confidence 356667777653 68999999999999 6799999999999999998765211 0001123888877753
No 279
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=95.09 E-value=0.097 Score=44.54 Aligned_cols=98 Identities=18% Similarity=0.236 Sum_probs=53.4
Q ss_pred CCCeEEEeCCCcchHHHHHH---HHC-CCCeEEEeec--ccccccCCC----CCCceEeeCCCCCC-----C------CC
Q 018205 194 GLGSLVDVGGGTGSFARIIS---EAF-PGIKCTVLDL--PHVVPKVPD----TDNLKFIAGDMFQS-----I------PP 252 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~---~~~-p~~~~~~~D~--~~~~~~a~~----~~~v~~~~~d~~~~-----~------p~ 252 (359)
++..|+++|.-.|.-+...+ +.+ ++.+++++|+ +..-..+.+ .+||+++.||..++ . +.
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 37999999999988665554 344 7789999999 333333444 48999999998542 1 12
Q ss_pred ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 018205 253 ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVI 297 (359)
Q Consensus 253 ~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~ 297 (359)
..+|+ -..=|.. +.+.+.|+.....+++ |+.++|.|...
T Consensus 112 ~vlVi-lDs~H~~--~hvl~eL~~y~plv~~---G~Y~IVeDt~~ 150 (206)
T PF04989_consen 112 PVLVI-LDSSHTH--EHVLAELEAYAPLVSP---GSYLIVEDTII 150 (206)
T ss_dssp SEEEE-ESS------SSHHHHHHHHHHT--T---T-EEEETSHHH
T ss_pred ceEEE-ECCCccH--HHHHHHHHHhCccCCC---CCEEEEEeccc
Confidence 33333 3333433 3346688889999999 78777766554
No 280
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=95.02 E-value=0.22 Score=43.30 Aligned_cols=127 Identities=16% Similarity=0.196 Sum_probs=68.7
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC-----CCCCceEeeCCCCCCCC-----CccEEEEcchh
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP-----DTDNLKFIAGDMFQSIP-----PADAFFFKAIF 262 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~-----~~~~v~~~~~d~~~~~p-----~~D~i~~~~vl 262 (359)
.+++||=||=.- ..+.+++-..+..+++++|+.+ .++..+ ..-.|+.+..|+..++| .||++++-=.
T Consensus 44 ~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPP- 121 (243)
T PF01861_consen 44 EGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPP- 121 (243)
T ss_dssp TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE----
T ss_pred cCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCC-
Confidence 468999999544 5666666666677999999965 666544 13349999999988777 3999997422
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCce
Q 018205 263 HAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSH 342 (359)
Q Consensus 263 ~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~ 342 (359)
++.+-..-++.+..+.|+. +|+..++ .....+... . ...++++.+.+.||.+
T Consensus 122 --yT~~G~~LFlsRgi~~Lk~--~g~~gy~-~~~~~~~s~-----~------------------~~~~~Q~~l~~~gl~i 173 (243)
T PF01861_consen 122 --YTPEGLKLFLSRGIEALKG--EGCAGYF-GFTHKEASP-----D------------------KWLEVQRFLLEMGLVI 173 (243)
T ss_dssp --SSHHHHHHHHHHHHHTB-S--TT-EEEE-EE-TTT--H-----H------------------HHHHHHHHHHTS--EE
T ss_pred --CCHHHHHHHHHHHHHHhCC--CCceEEE-EEecCcCcH-----H------------------HHHHHHHHHHHCCcCH
Confidence 3446667799999999997 2444333 322211100 0 1124667777888888
Q ss_pred eEEEEeCC
Q 018205 343 FKITPVYG 350 (359)
Q Consensus 343 ~~~~~~~~ 350 (359)
.++.+-++
T Consensus 174 ~dii~~Fn 181 (243)
T PF01861_consen 174 TDIIPDFN 181 (243)
T ss_dssp EEEEEEEE
T ss_pred HHHHhhhc
Confidence 88877644
No 281
>COG3355 Predicted transcriptional regulator [Transcription]
Probab=95.02 E-value=0.025 Score=43.86 Aligned_cols=49 Identities=14% Similarity=0.406 Sum_probs=40.1
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecc
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANV 88 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~ 88 (359)
+..+|-+|-+.++|.|+++||+.++. +...+.|-|+-|...|++.++..
T Consensus 29 Dv~v~~~LL~~~~~~tvdelae~lnr---~rStv~rsl~~L~~~GlV~Rek~ 77 (126)
T COG3355 29 DVEVYKALLEENGPLTVDELAEILNR---SRSTVYRSLQNLLEAGLVEREKV 77 (126)
T ss_pred HHHHHHHHHhhcCCcCHHHHHHHHCc---cHHHHHHHHHHHHHcCCeeeeee
Confidence 44455555422389999999999999 78999999999999999998863
No 282
>TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR. This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system.
Probab=94.66 E-value=0.048 Score=43.45 Aligned_cols=49 Identities=20% Similarity=0.274 Sum_probs=40.8
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccccc
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSK 106 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~ 106 (359)
++.|+++||+.+++ +.+.++++|+.|...|++...++ ..|.|.+++...
T Consensus 24 ~~~s~~~ia~~~~i---p~~~l~kil~~L~~~glv~s~~G------~~Ggy~l~~~~~ 72 (135)
T TIGR02010 24 GPVTLADISERQGI---SLSYLEQLFAKLRKAGLVKSVRG------PGGGYQLGRPAE 72 (135)
T ss_pred CcCcHHHHHHHHCc---CHHHHHHHHHHHHHCCceEEEeC------CCCCEeccCCHH
Confidence 58999999999999 78999999999999999986542 146788876443
No 283
>COG1959 Predicted transcriptional regulator [Transcription]
Probab=94.66 E-value=0.044 Score=44.50 Aligned_cols=49 Identities=16% Similarity=0.280 Sum_probs=42.0
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccccc
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSK 106 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~ 106 (359)
++.|+++||+..|+ ++.+|.++|..|...||++..++. .|.|++++-..
T Consensus 24 ~~~s~~~IA~~~~i---s~~~L~kil~~L~kaGlV~S~rG~------~GGy~Lar~~~ 72 (150)
T COG1959 24 GPVSSAEIAERQGI---SPSYLEKILSKLRKAGLVKSVRGK------GGGYRLARPPE 72 (150)
T ss_pred CcccHHHHHHHhCc---CHHHHHHHHHHHHHcCCEEeecCC------CCCccCCCChH
Confidence 38899999999999 679999999999999999877632 58899887543
No 284
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=94.58 E-value=0.36 Score=43.70 Aligned_cols=75 Identities=13% Similarity=0.249 Sum_probs=40.6
Q ss_pred CCCCeEEEeCCCcch-HHHHHHHHCCCCeEEEeecc-cccccCCC--------CCCceEeeC----CCCCCC----CCcc
Q 018205 193 QGLGSLVDVGGGTGS-FARIISEAFPGIKCTVLDLP-HVVPKVPD--------TDNLKFIAG----DMFQSI----PPAD 254 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~-~~~~l~~~~p~~~~~~~D~~-~~~~~a~~--------~~~v~~~~~----d~~~~~----p~~D 254 (359)
+...++||||+|..- +...-++.+ ++++++.|+. ..++.|++ .++|+++.. +++..+ ..||
T Consensus 101 ~~~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~d 179 (299)
T PF05971_consen 101 PEKVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFD 179 (299)
T ss_dssp S---EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EE
T ss_pred ccceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceee
Confidence 346799999999875 444444444 9999999994 47777762 567888755 344422 1399
Q ss_pred EEEEcchhccCCch
Q 018205 255 AFFFKAIFHAFVDE 268 (359)
Q Consensus 255 ~i~~~~vl~~~~~~ 268 (359)
..+|+==||.-.++
T Consensus 180 ftmCNPPFy~s~~e 193 (299)
T PF05971_consen 180 FTMCNPPFYSSQEE 193 (299)
T ss_dssp EEEE-----SS---
T ss_pred EEecCCccccChhh
Confidence 99998888766544
No 285
>PRK06474 hypothetical protein; Provisional
Probab=94.51 E-value=0.047 Score=45.70 Aligned_cols=76 Identities=18% Similarity=0.336 Sum_probs=53.8
Q ss_pred HHHHHHHHhcCcchhcccCCCCCCHHHHHHhc-CCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccccc
Q 018205 29 STSLKCAVELDIPEVIHKHGRPITLPQLVSAL-EINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKL 107 (359)
Q Consensus 29 ~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~-~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~~ 107 (359)
..+|..-.++.|++.|...+++.|+.+|++.+ ++ +...+.|.|+.|+..|+++......+-...+..|+++..+..
T Consensus 5 ~~~La~p~R~~Il~~L~~~~~~~ta~el~~~l~~i---s~aTvYrhL~~L~e~GLI~~~~~~~~~~~~ek~y~~~~~~~~ 81 (178)
T PRK06474 5 AEILMHPVRMKICQVLMRNKEGLTPLELVKILKDV---PQATLYRHLQTMVDSGILHVVKEKKVRSVSEKYYAINEEDAK 81 (178)
T ss_pred HHhhCCHHHHHHHHHHHhCCCCCCHHHHHHHhcCC---CHHHHHHHHHHHHHCCCEEEeecccccCceeEEEEeccceee
Confidence 35666778888999997743459999999999 56 678899999999999999976421100111234777765543
No 286
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=94.37 E-value=0.13 Score=49.34 Aligned_cols=94 Identities=24% Similarity=0.418 Sum_probs=61.7
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-----ccccccCCCCCCceEeeCCC---CCCCCC-ccEEEEcchhc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-----PHVVPKVPDTDNLKFIAGDM---FQSIPP-ADAFFFKAIFH 263 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-----~~~~~~a~~~~~v~~~~~d~---~~~~p~-~D~i~~~~vl~ 263 (359)
.....|+|..+|.|.++.+|.+. | +.+... +..+...-. ..+--+-.|- |...|. ||++...++|.
T Consensus 364 ~~iRNVMDMnAg~GGFAAAL~~~-~---VWVMNVVP~~~~ntL~vIyd-RGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs 438 (506)
T PF03141_consen 364 GRIRNVMDMNAGYGGFAAALIDD-P---VWVMNVVPVSGPNTLPVIYD-RGLIGVYHDWCEAFSTYPRTYDLLHADGLFS 438 (506)
T ss_pred cceeeeeeecccccHHHHHhccC-C---ceEEEecccCCCCcchhhhh-cccchhccchhhccCCCCcchhheehhhhhh
Confidence 45678999999999999999764 2 444433 222221111 1122222333 223554 99999999998
Q ss_pred cCC-chHHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 264 AFV-DEDCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 264 ~~~-~~~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
.+. .-+...+|-++-|+|+| +|.++|-|
T Consensus 439 ~~~~rC~~~~illEmDRILRP---~G~~iiRD 467 (506)
T PF03141_consen 439 LYKDRCEMEDILLEMDRILRP---GGWVIIRD 467 (506)
T ss_pred hhcccccHHHHHHHhHhhcCC---CceEEEec
Confidence 765 33556789999999999 89988854
No 287
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.35 E-value=0.091 Score=45.01 Aligned_cols=95 Identities=21% Similarity=0.375 Sum_probs=66.6
Q ss_pred ccCCCCeEEEeCCCcchHHHHHHHHCCC------C---eEEEeecccccccCCCCCCceEeeCCCCCC---------CC-
Q 018205 191 IFQGLGSLVDVGGGTGSFARIISEAFPG------I---KCTVLDLPHVVPKVPDTDNLKFIAGDMFQS---------IP- 251 (359)
Q Consensus 191 ~~~~~~~vlDvG~G~G~~~~~l~~~~p~------~---~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~---------~p- 251 (359)
.+.+..+++|+.+..|.++..|.++.-+ . +++.+|+..|... +.|.-+++|+..+ +.
T Consensus 38 i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI----~GV~qlq~DIT~~stae~Ii~hfgg 113 (294)
T KOG1099|consen 38 IFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPI----EGVIQLQGDITSASTAEAIIEHFGG 113 (294)
T ss_pred HHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCcc----CceEEeecccCCHhHHHHHHHHhCC
Confidence 4567889999999999999988887521 1 3999999776555 5688888999642 12
Q ss_pred -CccEEEEcch-----hccCCc----hHHHHHHHHHHHhcccCCCCcEEEE
Q 018205 252 -PADAFFFKAI-----FHAFVD----EDCLKILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 252 -~~D~i~~~~v-----l~~~~~----~~~~~~L~~~~~~L~p~~~gG~lli 292 (359)
.+|+|+|-.. +|.+.. +-....|.-...+|+| ||.++-
T Consensus 114 ekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~---Gg~FVa 161 (294)
T KOG1099|consen 114 EKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKP---GGSFVA 161 (294)
T ss_pred CCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecC---CCeeeh
Confidence 3899998643 666532 1223445666788999 776553
No 288
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=94.33 E-value=0.22 Score=43.70 Aligned_cols=99 Identities=16% Similarity=0.199 Sum_probs=61.4
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCC---C---------CCCceEeeCCCCC------CCCC-cc
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVP---D---------TDNLKFIAGDMFQ------SIPP-AD 254 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~---~---------~~~v~~~~~d~~~------~~p~-~D 254 (359)
...+||++|+|+|..+.. +......+++.-|++..++..+ . ...+.....+--. -.|. +|
T Consensus 86 ~~~~vlELGsGtglvG~~-aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGIL-AALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred cceeEEEecCCccHHHHH-HHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 467899999999955554 4444578999999977544332 1 1123322222111 1234 89
Q ss_pred EEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecC
Q 018205 255 AFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVIN 298 (359)
Q Consensus 255 ~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~ 298 (359)
+|+.+.+++.-... ..+++-+...|.. ++.+++.-....
T Consensus 165 lilasDvvy~~~~~--e~Lv~tla~ll~~---~~~i~l~~~lr~ 203 (248)
T KOG2793|consen 165 LILASDVVYEEESF--EGLVKTLAFLLAK---DGTIFLAYPLRR 203 (248)
T ss_pred EEEEeeeeecCCcc--hhHHHHHHHHHhc---CCeEEEEEeccc
Confidence 99999998765433 4478888888877 675555444443
No 289
>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.
Probab=94.27 E-value=0.027 Score=38.01 Aligned_cols=46 Identities=17% Similarity=0.213 Sum_probs=35.9
Q ss_pred CcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 39 DIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 39 glf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
.|.+.|....+|.+..|||+.+|+ +.-..+++|..|+..|.++...
T Consensus 4 ~Il~~i~~~~~p~~T~eiA~~~gl---s~~~aR~yL~~Le~eG~V~~~~ 49 (62)
T PF04703_consen 4 KILEYIKEQNGPLKTREIADALGL---SIYQARYYLEKLEKEGKVERSP 49 (62)
T ss_dssp CHHHHHHHHTS-EEHHHHHHHHTS----HHHHHHHHHHHHHCTSEEEES
T ss_pred HHHHHHHHcCCCCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEec
Confidence 344555542379999999999999 6788999999999999998753
No 290
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular
Probab=94.27 E-value=0.068 Score=35.53 Aligned_cols=44 Identities=11% Similarity=0.275 Sum_probs=38.4
Q ss_pred cchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 40 IPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 40 lf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
|.+.|.+. +..|+++||+.+|+ ....++|=|+.|...|++.+..
T Consensus 5 Il~~l~~~-~~~s~~ela~~~~V---S~~TiRRDl~~L~~~g~i~r~~ 48 (57)
T PF08220_consen 5 ILELLKEK-GKVSVKELAEEFGV---SEMTIRRDLNKLEKQGLIKRTH 48 (57)
T ss_pred HHHHHHHc-CCEEHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEc
Confidence 45566663 79999999999999 6799999999999999999885
No 291
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=94.26 E-value=0.036 Score=37.91 Aligned_cols=38 Identities=18% Similarity=0.400 Sum_probs=31.6
Q ss_pred CCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 48 GRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 48 ~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
|-|.|+.||++.+|+. ....+.+.|+.|+..|+|....
T Consensus 23 G~~Pt~rEIa~~~g~~--S~~tv~~~L~~Le~kG~I~r~~ 60 (65)
T PF01726_consen 23 GYPPTVREIAEALGLK--STSTVQRHLKALERKGYIRRDP 60 (65)
T ss_dssp SS---HHHHHHHHTSS--SHHHHHHHHHHHHHTTSEEEGC
T ss_pred CCCCCHHHHHHHhCCC--ChHHHHHHHHHHHHCcCccCCC
Confidence 4588999999999995 5899999999999999999874
No 292
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=94.23 E-value=0.071 Score=48.44 Aligned_cols=64 Identities=16% Similarity=0.240 Sum_probs=52.3
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCCC-----CCCceEeeCCCC
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVPD-----TDNLKFIAGDMF 247 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~ 247 (359)
+.+++.+. ..+...++|.=+|.|.++..++++.|+.+++++|. +.+++.+++ .+|++++.++|.
T Consensus 10 ~Evl~~L~--~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~ 79 (305)
T TIGR00006 10 DEVVEGLN--IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFA 79 (305)
T ss_pred HHHHHhcC--cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHH
Confidence 67777776 45667999999999999999999987789999999 457776652 358999998884
No 293
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=94.19 E-value=0.38 Score=45.37 Aligned_cols=112 Identities=16% Similarity=0.253 Sum_probs=66.3
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcch----HHHHHHHHC---CCCeEEEeeccc-----ccccCC-------C--CCCce
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGS----FARIISEAF---PGIKCTVLDLPH-----VVPKVP-------D--TDNLK 240 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~----~~~~l~~~~---p~~~~~~~D~~~-----~~~~a~-------~--~~~v~ 240 (359)
+.|++.+. -.+..+|+|+|.|.|. +...|+.+. |.+++|+++.|. .++.+. + .-.++
T Consensus 100 qaIleA~~--g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fe 177 (374)
T PF03514_consen 100 QAILEAFE--GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFE 177 (374)
T ss_pred HHHHHHhc--cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEE
Confidence 67778776 4567899999999996 445555543 678999999943 222221 0 22334
Q ss_pred EeeC--CCCCCC--------C-CccEEEEcchhccCCch------HHHHHHHHHHHhcccCCCCcEEEEEeeecCCC
Q 018205 241 FIAG--DMFQSI--------P-PADAFFFKAIFHAFVDE------DCLKILKRCREAIASRGDRGKVIIIDIVINEK 300 (359)
Q Consensus 241 ~~~~--d~~~~~--------p-~~D~i~~~~vl~~~~~~------~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~ 300 (359)
|... +-.+.+ + ++=+|-+...||++.++ ....+|+.++ .|+| -.++++|...+.+
T Consensus 178 f~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir-~L~P----~vvv~~E~ea~~n 249 (374)
T PF03514_consen 178 FHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIR-SLNP----KVVVLVEQEADHN 249 (374)
T ss_pred EEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHH-hcCC----CEEEEEeecCCCC
Confidence 4432 221221 1 13344466778888632 2344676665 6788 5777777765543
No 294
>PRK03902 manganese transport transcriptional regulator; Provisional
Probab=94.09 E-value=0.069 Score=42.95 Aligned_cols=50 Identities=14% Similarity=0.191 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccccccc
Q 018205 48 GRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLF 108 (359)
Q Consensus 48 ~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~~l 108 (359)
+++.++.+||+.+++ ....+.+.++.|...|++.... ...|++|+.+..+
T Consensus 20 ~~~~~~~ela~~l~v---s~~svs~~l~~L~~~Gli~~~~--------~~~i~LT~~G~~~ 69 (142)
T PRK03902 20 KGYARVSDIAEALSV---HPSSVTKMVQKLDKDEYLIYEK--------YRGLVLTPKGKKI 69 (142)
T ss_pred CCCcCHHHHHHHhCC---ChhHHHHHHHHHHHCCCEEEec--------CceEEECHHHHHH
Confidence 378899999999999 6789999999999999998764 4789999887643
No 295
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=93.96 E-value=0.19 Score=47.97 Aligned_cols=97 Identities=22% Similarity=0.291 Sum_probs=72.8
Q ss_pred CeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-cccc-----CCCCCCceEeeCCCCC-CCC--CccEEEEcchhccCC
Q 018205 196 GSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPK-----VPDTDNLKFIAGDMFQ-SIP--PADAFFFKAIFHAFV 266 (359)
Q Consensus 196 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~-----a~~~~~v~~~~~d~~~-~~p--~~D~i~~~~vl~~~~ 266 (359)
.+++-+|||.-.+...+-+.. ...++.+|.+. +++. +++.....+...|+.. .++ +||+|+....++++-
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G-~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNG-FEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcC-CCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 489999999998888776653 33699999966 4432 2356778899999965 455 599999999998863
Q ss_pred -chHH-------HHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 267 -DEDC-------LKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 267 -~~~~-------~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
+++. ...+..+++++++ ||+.+.+...
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~---~gk~~svtl~ 163 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAP---GGKYISVTLV 163 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhcc---CCEEEEEEee
Confidence 3322 2458899999999 8998888874
No 296
>COG4742 Predicted transcriptional regulator [Transcription]
Probab=93.86 E-value=0.062 Score=47.33 Aligned_cols=65 Identities=14% Similarity=0.331 Sum_probs=55.2
Q ss_pred HHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccccccc
Q 018205 31 SLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFL 109 (359)
Q Consensus 31 ~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
++...-+.+|+-.|.+ ||+|.+||-..+++ ....+..-++-|...|++.++ ++.|++|..+..++
T Consensus 9 if~SekRk~lLllL~e--gPkti~EI~~~l~v---s~~ai~pqiKkL~~~~LV~~~---------~~~Y~LS~~G~iiv 73 (260)
T COG4742 9 LFLSEKRKDLLLLLKE--GPKTIEEIKNELNV---SSSAILPQIKKLKDKGLVVQE---------GDRYSLSSLGKIIV 73 (260)
T ss_pred HHccHHHHHHHHHHHh--CCCCHHHHHHHhCC---CcHHHHHHHHHHhhCCCEEec---------CCEEEecchHHHHH
Confidence 4456677888888987 89999999999999 567788889999999999998 49999998876544
No 297
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=93.85 E-value=0.1 Score=48.11 Aligned_cols=97 Identities=19% Similarity=0.228 Sum_probs=73.1
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCCC-------CCCceEeeCCCCCCC---CCccEEEEcch
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVPD-------TDNLKFIAGDMFQSI---PPADAFFFKAI 261 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~~---p~~D~i~~~~v 261 (359)
..+.+|||.=+|.|-++..+++.. ..+++++|+ |..++..++ .++++.+.+|..+-. +.+|-|++...
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g-~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p 265 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKG-RPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP 265 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcC-CceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence 347999999999999999999874 334999999 666665542 456899999996522 45999998764
Q ss_pred hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 018205 262 FHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINE 299 (359)
Q Consensus 262 l~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~ 299 (359)
- ...+++..+.+.+++ ||.+.+.+....+
T Consensus 266 ~------~a~~fl~~A~~~~k~---~g~iHyy~~~~e~ 294 (341)
T COG2520 266 K------SAHEFLPLALELLKD---GGIIHYYEFVPED 294 (341)
T ss_pred C------cchhhHHHHHHHhhc---CcEEEEEeccchh
Confidence 3 224588888889998 7888777765544
No 298
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=93.77 E-value=0.038 Score=37.25 Aligned_cols=46 Identities=15% Similarity=0.294 Sum_probs=36.4
Q ss_pred CcchhcccCCCC-CCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 39 DIPEVIHKHGRP-ITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 39 glf~~L~~~~~~-~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
.++..|...+++ +|..|||+.+++ ++..+.+.++.|+..|++++..
T Consensus 9 ~vL~~l~~~~~~~~t~~~la~~l~~---~~~~vs~~v~~L~~~Glv~r~~ 55 (62)
T PF12802_consen 9 RVLMALARHPGEELTQSELAERLGI---SKSTVSRIVKRLEKKGLVERER 55 (62)
T ss_dssp HHHHHHHHSTTSGEEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHCCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeC
Confidence 344455553222 899999999999 6899999999999999999874
No 299
>TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator). This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency.
Probab=93.69 E-value=0.079 Score=41.92 Aligned_cols=49 Identities=18% Similarity=0.320 Sum_probs=40.1
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccccc
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSK 106 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~ 106 (359)
++.|.++||+.+++ +...++++|+.|...|++....+ ..|.|.+++...
T Consensus 24 ~~~s~~eia~~~~i---~~~~v~~il~~L~~~gli~~~~g------~~ggy~l~~~~~ 72 (132)
T TIGR00738 24 GPVSVKEIAERQGI---SRSYLEKILRTLRRAGLVESVRG------PGGGYRLARPPE 72 (132)
T ss_pred CcCcHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEeccC------CCCCccCCCCHH
Confidence 59999999999999 68999999999999999986531 146788766443
No 300
>PRK11920 rirA iron-responsive transcriptional regulator; Reviewed
Probab=93.66 E-value=0.097 Score=42.66 Aligned_cols=62 Identities=18% Similarity=0.282 Sum_probs=47.1
Q ss_pred HHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccc
Q 018205 30 TSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTS 105 (359)
Q Consensus 30 ~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~ 105 (359)
+++++.+.+-.. . +++.|+++||+..++ +...|.++|..|...||++..++. .|.|++++..
T Consensus 9 YAlr~L~~LA~~----~-~~~~s~~eIA~~~~i---s~~~L~kIl~~L~~aGlv~S~rG~------~GGy~La~~p 70 (153)
T PRK11920 9 YAIRMLMYCAAN----D-GKLSRIPEIARAYGV---SELFLFKILQPLVEAGLVETVRGR------NGGVRLGRPA 70 (153)
T ss_pred HHHHHHHHHHhC----C-CCcCcHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeecCC------CCCeeecCCH
Confidence 455555554321 1 257899999999999 789999999999999999877632 5789887644
No 301
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=93.65 E-value=0.12 Score=43.11 Aligned_cols=47 Identities=13% Similarity=0.174 Sum_probs=40.6
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
...|+++|..+ +++|.++||+.+|+ ....++++|..|...||+....
T Consensus 24 ~~~Vl~~L~~~-g~~tdeeLA~~Lgi---~~~~VRk~L~~L~e~gLv~~~r 70 (178)
T PRK06266 24 GFEVLKALIKK-GEVTDEEIAEQTGI---KLNTVRKILYKLYDARLADYKR 70 (178)
T ss_pred HhHHHHHHHHc-CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEEee
Confidence 34478888775 69999999999999 6899999999999999998553
No 302
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=93.61 E-value=0.05 Score=37.76 Aligned_cols=44 Identities=14% Similarity=0.413 Sum_probs=35.5
Q ss_pred cchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 40 IPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 40 lf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
|-+.|.+ .+.+|+.|||+.+++ ++..+..+|..|+..|.+.+..
T Consensus 5 i~~~l~~-~~~~S~~eLa~~~~~---s~~~ve~mL~~l~~kG~I~~~~ 48 (69)
T PF09012_consen 5 IRDYLRE-RGRVSLAELAREFGI---SPEAVEAMLEQLIRKGYIRKVD 48 (69)
T ss_dssp HHHHHHH-S-SEEHHHHHHHTT-----HHHHHHHHHHHHCCTSCEEEE
T ss_pred HHHHHHH-cCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEEec
Confidence 3455665 378999999999999 6899999999999999999875
No 303
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=93.47 E-value=0.089 Score=47.81 Aligned_cols=63 Identities=22% Similarity=0.332 Sum_probs=47.5
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCC-----CCCCceEeeCCC
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVP-----DTDNLKFIAGDM 246 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-----~~~~v~~~~~d~ 246 (359)
+++++.+. ..+...++|.=-|.|.++..+++++|+.+++++|. |.+++.|+ ..+|+.++..+|
T Consensus 10 ~Evl~~L~--~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F 78 (310)
T PF01795_consen 10 KEVLEALN--PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNF 78 (310)
T ss_dssp HHHHHHHT----TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-G
T ss_pred HHHHHhhC--cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccH
Confidence 67777776 56678999999999999999999999999999999 55776554 257899999888
No 304
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.43 E-value=0.16 Score=40.44 Aligned_cols=107 Identities=13% Similarity=0.183 Sum_probs=70.6
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCC-------CCCCceEeeCCCCC-CCCC
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVP-------DTDNLKFIAGDMFQ-SIPP 252 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-------~~~~v~~~~~d~~~-~~p~ 252 (359)
+.++.-+. ..+..+.+|+|+|.|......++.. -...+|+++ |..+..++ -..+..|...|+++ ++..
T Consensus 62 ~nVLSll~--~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~d 138 (199)
T KOG4058|consen 62 ENVLSLLR--GNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRD 138 (199)
T ss_pred HHHHHHcc--CCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccc
Confidence 45555555 3455899999999999988877763 357899999 55655544 26788899999987 5666
Q ss_pred ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 018205 253 ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINE 299 (359)
Q Consensus 253 ~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~ 299 (359)
|..++.+.+=..++ .+-.+++.-|+. +.+++-.-...+.
T Consensus 139 y~~vviFgaes~m~-----dLe~KL~~E~p~---nt~vvacRFPLP~ 177 (199)
T KOG4058|consen 139 YRNVVIFGAESVMP-----DLEDKLRTELPA---NTRVVACRFPLPT 177 (199)
T ss_pred cceEEEeehHHHHh-----hhHHHHHhhCcC---CCeEEEEecCCCc
Confidence 66555544332222 244555656666 6777766655554
No 305
>COG4189 Predicted transcriptional regulator [Transcription]
Probab=93.37 E-value=0.091 Score=44.84 Aligned_cols=56 Identities=18% Similarity=0.373 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeee
Q 018205 27 VSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTA 86 (359)
Q Consensus 27 ~~~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~ 86 (359)
-..++|...+++.|+..|+.. +|+.+.|||+++|+ ++..+..-+..|+..|++.-+
T Consensus 15 dv~kalaS~vRv~Il~lL~~k-~plNvneiAe~lgL---pqst~s~~ik~Le~aGlirT~ 70 (308)
T COG4189 15 DVLKALASKVRVAILQLLHRK-GPLNVNEIAEALGL---PQSTMSANIKVLEKAGLIRTE 70 (308)
T ss_pred hHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHhCC---chhhhhhhHHHHHhcCceeee
Confidence 345678889999999999885 79999999999999 788999999999999999754
No 306
>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein.
Probab=93.35 E-value=0.083 Score=39.22 Aligned_cols=47 Identities=11% Similarity=0.321 Sum_probs=39.0
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
++.++..|... +++|..+|++.+++ +...+.+.++-|+..|+++...
T Consensus 12 ~~~il~~l~~~-~~~~~~~la~~~~~---s~~~i~~~l~~L~~~g~v~~~~ 58 (101)
T smart00347 12 QFLVLRILYEE-GPLSVSELAKRLGV---SPSTVTRVLDRLEKKGLIRRLP 58 (101)
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCC---CchhHHHHHHHHHHCCCeEecC
Confidence 44566666653 57999999999999 6788999999999999998764
No 307
>TIGR02944 suf_reg_Xantho FeS assembly SUF system regulator, gammaproteobacterial. The SUF system is an oxygen-resistant iron-sulfur cluster assembly system found in both aerobes and facultative anaerobes. Its presence appears to be a marker of oxygen tolerance; strict anaerobes and microaerophiles tend to have different FeS cluster biosynthesis systems. Members of this protein family belong to the rrf2 family of transcriptional regulators and are found, typically, as the first gene of a SUF operon. It is found only in a subset of genomes that encode the SUF system, including the genus Xanthomonas. The conserved location suggests an autoregulatory role.
Probab=93.24 E-value=0.097 Score=41.34 Aligned_cols=46 Identities=17% Similarity=0.333 Sum_probs=38.2
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccc
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTL 103 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~ 103 (359)
++.|+.|||+.+++ +...+.++|+.|...|++....+ ..+.|.+.+
T Consensus 24 ~~~s~~eia~~l~i---s~~~v~~~l~~L~~~Gli~~~~g------~~ggy~l~~ 69 (130)
T TIGR02944 24 QPYSAAEIAEQTGL---NAPTVSKILKQLSLAGIVTSKRG------VEGGYTLAR 69 (130)
T ss_pred CCccHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEecCC------CCCChhhcC
Confidence 68999999999999 68999999999999999986531 135677654
No 308
>TIGR02702 SufR_cyano iron-sulfur cluster biosynthesis transcriptional regulator SufR. All members of this cyanobacterial protein family are the transcriptional regulator SufR and regulate the SUF system, which makes possible iron-sulfur cluster biosynthesis despite exposure to oxygen. In all cases, the sufR gene is encoded near SUF system genes but in the opposite direction. This DNA-binding protein belongs to the the DeoR family of helix-loop-helix proteins. All members also have a probable metal-binding motif C-X(12)-C-X(13)-C-X(14)-C near the C-terminus.
Probab=93.21 E-value=0.13 Score=44.13 Aligned_cols=67 Identities=19% Similarity=0.237 Sum_probs=46.6
Q ss_pred CcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccccccc
Q 018205 39 DIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFL 109 (359)
Q Consensus 39 glf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
.|+..|... +++|+.+||+.+|+ +...+++.|+.|+..|+++........+-..-.|++|+.+....
T Consensus 5 ~IL~~L~~~-~~~t~~eLA~~lgi---s~~tV~~~L~~Le~~GlV~r~~~~~~~gRp~~~y~LT~~G~~~~ 71 (203)
T TIGR02702 5 DILSYLLKQ-GQATAAALAEALAI---SPQAVRRHLKDLETEGLIEYEAVVQGMGRPQYHYQLSRQGREQF 71 (203)
T ss_pred HHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEeecccCCCCCceEEEECcchhhhc
Confidence 456666553 68999999999999 67999999999999999987621000000112378887765443
No 309
>PRK11014 transcriptional repressor NsrR; Provisional
Probab=93.18 E-value=0.12 Score=41.51 Aligned_cols=61 Identities=11% Similarity=0.273 Sum_probs=45.9
Q ss_pred HHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccc
Q 018205 30 TSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTL 103 (359)
Q Consensus 30 ~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~ 103 (359)
+++++.+.++.+ .. |.+.|.++||+..|+ +...+++.|+.|...|+++...+. +|.|.+.+
T Consensus 9 YAl~~~i~la~~---~~-g~~~s~~~ia~~~~i---s~~~vrk~l~~L~~~Glv~s~~G~------~GG~~l~~ 69 (141)
T PRK11014 9 YGLRALIYMASL---PE-GRMTSISEVTEVYGV---SRNHMVKIINQLSRAGYVTAVRGK------NGGIRLGK 69 (141)
T ss_pred HHHHHHHHHhcC---CC-CCccCHHHHHHHHCc---CHHHHHHHHHHHHhCCEEEEecCC------CCCeeecC
Confidence 455555555433 22 357899999999999 689999999999999999877521 46787765
No 310
>KOG2730 consensus Methylase [General function prediction only]
Probab=93.15 E-value=0.024 Score=48.14 Aligned_cols=53 Identities=23% Similarity=0.325 Sum_probs=41.9
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCC-------CCCCceEeeCCCCC
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVP-------DTDNLKFIAGDMFQ 248 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-------~~~~v~~~~~d~~~ 248 (359)
....|+|.-||.|.-++.++.++|. |+++|+ |.-+.-|+ -.+||+|++||+++
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~--VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld 154 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPY--VIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLD 154 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCe--EEEEeccHHHHHHHhccceeecCCceeEEEechHHH
Confidence 4678999999999999999988664 889998 43444444 15699999999975
No 311
>PRK11050 manganese transport regulator MntR; Provisional
Probab=93.15 E-value=0.11 Score=42.33 Aligned_cols=57 Identities=14% Similarity=0.197 Sum_probs=45.4
Q ss_pred cchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccccccc
Q 018205 40 IPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLF 108 (359)
Q Consensus 40 lf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~~l 108 (359)
|...+.. +++.+..+||+.+++ +...+.++++.|...|++.... ...+++|+.+..+
T Consensus 42 I~~~l~~-~~~~t~~eLA~~l~i---s~stVsr~l~~Le~~GlI~r~~--------~~~v~LT~~G~~l 98 (152)
T PRK11050 42 IADLIAE-VGEARQVDIAARLGV---SQPTVAKMLKRLARDGLVEMRP--------YRGVFLTPEGEKL 98 (152)
T ss_pred HHHHHHh-cCCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEec--------CCceEECchHHHH
Confidence 4445544 368999999999999 6899999999999999998764 3567788766544
No 312
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=93.13 E-value=0.4 Score=46.23 Aligned_cols=127 Identities=18% Similarity=0.275 Sum_probs=82.5
Q ss_pred ChhhhcccCccHHHHHHHHHhhcccchHHHHHhccccc-CCCCeEEEeCCCcchHHHHHHHHC----CCCeEEEeec-cc
Q 018205 155 VFWDYMAKNPDFNSIYNQAMASDSQLANLIVKDCQPIF-QGLGSLVDVGGGTGSFARIISEAF----PGIKCTVLDL-PH 228 (359)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~-~~~~~vlDvG~G~G~~~~~l~~~~----p~~~~~~~D~-~~ 228 (359)
..|+.+++|+-....|.+|+. .++++..+... +....|.-+|+|.|-+..+..+.- ..+++++++- |.
T Consensus 333 ~TYetFEkD~VKY~~Yq~Ai~------~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPN 406 (649)
T KOG0822|consen 333 QTYETFEKDPVKYDQYQQAIL------KALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPN 406 (649)
T ss_pred hhhhhhhccchHHHHHHHHHH------HHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcc
Confidence 346667777766666665554 35555555322 225678889999998776665532 3567888886 65
Q ss_pred ccccCC------CCCCceEeeCCCCC-CCC--CccEEEEcchhccCCc-hHHHHHHHHHHHhcccCCCCcEEE
Q 018205 229 VVPKVP------DTDNLKFIAGDMFQ-SIP--PADAFFFKAIFHAFVD-EDCLKILKRCREAIASRGDRGKVI 291 (359)
Q Consensus 229 ~~~~a~------~~~~v~~~~~d~~~-~~p--~~D~i~~~~vl~~~~~-~~~~~~L~~~~~~L~p~~~gG~ll 291 (359)
++.... -.++|+++..||.. .-| .+|++++ ..|--+.| +-..+.|.-+-+.|+| +|.-|
T Consensus 407 AivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VS-ELLGSFGDNELSPECLDG~q~fLkp---dgIsI 475 (649)
T KOG0822|consen 407 AIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVS-ELLGSFGDNELSPECLDGAQKFLKP---DGISI 475 (649)
T ss_pred hhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHH-HhhccccCccCCHHHHHHHHhhcCC---CceEc
Confidence 443322 16899999999966 333 4898875 33444443 3346789999999999 75433
No 313
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=93.09 E-value=0.19 Score=32.76 Aligned_cols=42 Identities=33% Similarity=0.336 Sum_probs=34.3
Q ss_pred HHHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHH
Q 018205 29 STSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLL 77 (359)
Q Consensus 29 ~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L 77 (359)
-.+|.+|.+.|-||.= ...|++|||+.+|+ ....+...||-.
T Consensus 6 ~e~L~~A~~~GYfd~P----R~~tl~elA~~lgi---s~st~~~~LRra 47 (53)
T PF04967_consen 6 REILKAAYELGYFDVP----RRITLEELAEELGI---SKSTVSEHLRRA 47 (53)
T ss_pred HHHHHHHHHcCCCCCC----CcCCHHHHHHHhCC---CHHHHHHHHHHH
Confidence 3588999999999875 37899999999999 566777777654
No 314
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=93.09 E-value=0.29 Score=41.01 Aligned_cols=100 Identities=12% Similarity=0.216 Sum_probs=64.8
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC-------CCCCceEeeCCCCCC------CCCccEEEEc
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP-------DTDNLKFIAGDMFQS------IPPADAFFFK 259 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~-------~~~~v~~~~~d~~~~------~p~~D~i~~~ 259 (359)
.+.++||+=+|+|.++...+.+. -.+++.+|.+. .+...+ ...+++++..|.... .+.||+|++-
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRG-A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD 121 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRG-AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD 121 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence 47899999999999999998885 34899999843 554443 257888888888531 1139999975
Q ss_pred chhc-cCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecC
Q 018205 260 AIFH-AFVDEDCLKILKRCREAIASRGDRGKVIIIDIVIN 298 (359)
Q Consensus 260 ~vl~-~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~ 298 (359)
==++ ..-+.....++-.-..+|+| +.++++|....
T Consensus 122 PPy~~~l~~~~~~~~~~~~~~~L~~----~~~iv~E~~~~ 157 (187)
T COG0742 122 PPYAKGLLDKELALLLLEENGWLKP----GALIVVEHDKD 157 (187)
T ss_pred CCCccchhhHHHHHHHHHhcCCcCC----CcEEEEEeCCC
Confidence 4443 11111221122224577998 55666665544
No 315
>TIGR00122 birA_repr_reg BirA biotin operon repressor domain. This model may recognize some other putative repressor proteins, such as DnrO of Streptomyces peucetius with scores below the noise cutoff but with significance shown by low E-value.
Probab=93.05 E-value=0.11 Score=35.97 Aligned_cols=54 Identities=19% Similarity=0.214 Sum_probs=42.2
Q ss_pred cCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccc
Q 018205 38 LDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLT 104 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~ 104 (359)
+.|+..|.+ ++.+..+||+.+|+ ....+.+.++.|.+.|+..... +..|++.+.
T Consensus 3 ~~il~~L~~--~~~~~~eLa~~l~v---S~~tv~~~l~~L~~~g~~i~~~--------~~g~~l~~~ 56 (69)
T TIGR00122 3 LRLLALLAD--NPFSGEKLGEALGM---SRTAVNKHIQTLREWGVDVLTV--------GKGYRLPPP 56 (69)
T ss_pred HHHHHHHHc--CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEEec--------CCceEecCc
Confidence 456667776 68999999999999 6899999999999999965443 356666543
No 316
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=93.03 E-value=0.38 Score=38.36 Aligned_cols=54 Identities=22% Similarity=0.361 Sum_probs=32.7
Q ss_pred CCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCCCCCceEeeCCCCC
Q 018205 195 LGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPDTDNLKFIAGDMFQ 248 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~ 248 (359)
..-|+|+|=|+|.+=..|.+.+|+.+++++|..-.+.-....+.-.++.||+.+
T Consensus 29 ~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~~P~~~~~ilGdi~~ 82 (160)
T PF12692_consen 29 PGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSSTPPEEDLILGDIRE 82 (160)
T ss_dssp -S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG---GGGEEES-HHH
T ss_pred CCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCCCCchHheeeccHHH
Confidence 478999999999999999999999999999974333222223445788888854
No 317
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=92.92 E-value=0.22 Score=32.92 Aligned_cols=36 Identities=11% Similarity=0.173 Sum_probs=32.2
Q ss_pred CCC-CHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 49 RPI-TLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 49 ~~~-t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
..+ |..+||+.+|+ +...+++.|+.|...|++....
T Consensus 18 ~~l~s~~~la~~~~v---s~~tv~~~l~~L~~~g~i~~~~ 54 (60)
T smart00345 18 DKLPSERELAAQLGV---SRTTVREALSRLEAEGLVQRRP 54 (60)
T ss_pred CcCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEec
Confidence 455 89999999999 6899999999999999998764
No 318
>cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators. This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is
Probab=92.89 E-value=0.31 Score=32.90 Aligned_cols=34 Identities=15% Similarity=0.175 Sum_probs=30.5
Q ss_pred CCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 51 ITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 51 ~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
.|..+||+.+++ +...+.+.|..|...|+++...
T Consensus 26 ~~~~~la~~~~i---s~~~v~~~l~~L~~~G~i~~~~ 59 (66)
T cd07377 26 PSERELAEELGV---SRTTVREALRELEAEGLVERRP 59 (66)
T ss_pred CCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecC
Confidence 359999999999 6799999999999999998664
No 319
>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance. This family of transcription regulators is named after Escherichia coli MarR, a repressor of genes which activate the multiple antibiotic resistance and oxidative stress regulons, and after slyA from Salmonella typhimurium and E. coli, a transcription regulator that is required for virulence and survival in the macrophage environment. Regulators with the MarR-type HTH domain are present in bacteria and archaea and control a variety of biological functions, including resistance to multiple antibiotics, household disinfectants, organic solvents, oxidative stress agents and regulation of the virulence factor synthesis in pathogens of humans and plants. Many of the MarR-like regulators respond to aromatic compounds [, , ]. The crystal structures of MarR, MexR and SlyA have been determined and show a winged HTH DNA-binding core flanked by helices involved in dimerisation. The DNA-binding domains are ascribed to the superfamily of winged helix proteins, containing a three (four)-helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-(H1')-H2-B1-H3-H4-B2-B3-H5-H6. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. The helices 1, 5 and 6 are involved in dimerisation, as most MarR-like transcription regulators form dimers [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1JGS_A 2NYX_D 2PEX_B 2PFB_A 3BPX_A 3BPV_A 2BV6_A 3BJA_A 3E6M_B 2ETH_A ....
Probab=92.84 E-value=0.046 Score=36.46 Aligned_cols=43 Identities=16% Similarity=0.307 Sum_probs=35.8
Q ss_pred chhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 41 PEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 41 f~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
+..|.+. +++|..+||+.+++ +...+.++++.|+..|++++..
T Consensus 9 L~~l~~~-~~~~~~~la~~~~~---~~~~~t~~i~~L~~~g~I~r~~ 51 (59)
T PF01047_consen 9 LRILYEN-GGITQSELAEKLGI---SRSTVTRIIKRLEKKGLIERER 51 (59)
T ss_dssp HHHHHHH-SSEEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHc-CCCCHHHHHHHHCC---ChhHHHHHHHHHHHCCCEEecc
Confidence 3334443 68999999999999 7899999999999999999875
No 320
>smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor.
Probab=92.80 E-value=0.2 Score=33.57 Aligned_cols=42 Identities=10% Similarity=0.225 Sum_probs=35.4
Q ss_pred chhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 41 PEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 41 f~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
+..|.. ++.|..+|++.+++ +...+.+.|+.|...|++....
T Consensus 3 l~~l~~--~~~~~~~i~~~l~i---s~~~v~~~l~~L~~~g~i~~~~ 44 (66)
T smart00418 3 LKLLAE--GELCVCELAEILGL---SQSTVSHHLKKLREAGLVESRR 44 (66)
T ss_pred HHHhhc--CCccHHHHHHHHCC---CHHHHHHHHHHHHHCCCeeeee
Confidence 444443 68999999999999 5788999999999999998664
No 321
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=92.74 E-value=0.19 Score=46.80 Aligned_cols=99 Identities=12% Similarity=0.107 Sum_probs=65.9
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCC---------------------------------------eEEEeecc-cccc
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGI---------------------------------------KCTVLDLP-HVVP 231 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~---------------------------------------~~~~~D~~-~~~~ 231 (359)
+.+...++|==||+|++++..+...+++ .++|+|+. .+++
T Consensus 189 w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~ 268 (381)
T COG0116 189 WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIE 268 (381)
T ss_pred CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHH
Confidence 4455799999999999999988877532 27799994 5888
Q ss_pred cCC-------CCCCceEeeCCCCC-CCC--CccEEEEcchh-ccCCchHH-----HHHHHHHHHhcccCCCCcEEEEE
Q 018205 232 KVP-------DTDNLKFIAGDMFQ-SIP--PADAFFFKAIF-HAFVDEDC-----LKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 232 ~a~-------~~~~v~~~~~d~~~-~~p--~~D~i~~~~vl-~~~~~~~~-----~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
.|+ ..+.|+|.++|+.. .-| .+|+|+++--- ..+.++.. ..+.+.+++.++. .+..+++
T Consensus 269 ~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~---ws~~v~t 343 (381)
T COG0116 269 GAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAG---WSRYVFT 343 (381)
T ss_pred HHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcC---CceEEEE
Confidence 776 26789999999954 233 58999986211 01222221 2355566666664 4555553
No 322
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets. The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....
Probab=92.69 E-value=0.15 Score=33.46 Aligned_cols=39 Identities=21% Similarity=0.299 Sum_probs=31.9
Q ss_pred cchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccC
Q 018205 40 IPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTG 81 (359)
Q Consensus 40 lf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g 81 (359)
|+..|.+.++++|.++||+.+++ ..+.+.+-++.|...|
T Consensus 5 il~~L~~~~~~it~~eLa~~l~v---S~rTi~~~i~~L~~~~ 43 (55)
T PF08279_consen 5 ILKLLLESKEPITAKELAEELGV---SRRTIRRDIKELREWG 43 (55)
T ss_dssp HHHHHHHTTTSBEHHHHHHHCTS----HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCcCHHHHHHHhCC---CHHHHHHHHHHHHHCC
Confidence 44556333467999999999999 6899999999999999
No 323
>COG2345 Predicted transcriptional regulator [Transcription]
Probab=92.50 E-value=0.13 Score=44.19 Aligned_cols=61 Identities=21% Similarity=0.280 Sum_probs=45.8
Q ss_pred CcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccc----eEeccccccc
Q 018205 39 DIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEE----AYALTLTSKL 107 (359)
Q Consensus 39 glf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~----~~~~t~~~~~ 107 (359)
.|...|.++ +|+|++|||+++|+ +...+++.|..|++.|+++.... ..+-| .|++|..+..
T Consensus 15 ~il~lL~~~-g~~sa~elA~~Lgi---s~~avR~HL~~Le~~Glv~~~~~----~~g~GRP~~~y~Lt~~g~~ 79 (218)
T COG2345 15 RILELLKKS-GPVSADELAEELGI---SPMAVRRHLDDLEAEGLVEVERQ----QGGRGRPAKLYRLTEKGRE 79 (218)
T ss_pred HHHHHHhcc-CCccHHHHHHHhCC---CHHHHHHHHHHHHhCcceeeeec----cCCCCCCceeeeecccchh
Confidence 344556654 79999999999999 67999999999999999986631 11112 3888877654
No 324
>PF01638 HxlR: HxlR-like helix-turn-helix; InterPro: IPR002577 The hxlR-type HTH domain is a domain of ~90-100 amino acids present in putative transcription regulators with a winged helix-turn-helix (wHTH) structure. The domain is named after Bacillus subtilis hxlR, a transcription activator of the hxlAB operon involved in the detoxification of formaldehyde []. The hxlR-type domain forms the core of putative transcription regulators and of hypothetical proteins occurring in eubacteria as well as in archaea. The sequence and structure of hxlR-type proteins show similarities with the marR-type wHTH []. The crystal structure of ytfH resembles the DNA-binding domains of winged helix proteins, containing a three helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-H2-B1-H3-H4-B2-B3-H5-H6. This topology corresponds with that of the marR-type DNA-binding domain, wherein helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. ; PDB: 2F2E_B 3DF8_A 1Z7U_B 1YYV_A 4A5M_D 4A5N_B 2FSW_A 2HZT_D.
Probab=92.47 E-value=0.088 Score=38.67 Aligned_cols=62 Identities=19% Similarity=0.273 Sum_probs=45.1
Q ss_pred chhcccCCCCCCHHHHHHhc-CCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccccccc
Q 018205 41 PEVIHKHGRPITLPQLVSAL-EINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFL 109 (359)
Q Consensus 41 f~~L~~~~~~~t~~ela~~~-~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
+..|.. ++....||.+.+ |+ ....|.+-|+.|++.|++++...... ...-.|++|+.+..+.
T Consensus 11 L~~l~~--g~~rf~el~~~l~~i---s~~~L~~~L~~L~~~GLv~r~~~~~~--p~~v~Y~LT~~G~~l~ 73 (90)
T PF01638_consen 11 LRALFQ--GPMRFSELQRRLPGI---SPKVLSQRLKELEEAGLVERRVYPEV--PPRVEYSLTEKGKELL 73 (90)
T ss_dssp HHHHTT--SSEEHHHHHHHSTTS----HHHHHHHHHHHHHTTSEEEEEESSS--SSEEEEEE-HHHHHHH
T ss_pred HHHHHh--CCCcHHHHHHhcchh---HHHHHHHHHHHHHHcchhhcccccCC--CCCCccCCCcCHHHHH
Confidence 344554 799999999999 88 67899999999999999988742110 0123599999887655
No 325
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=92.47 E-value=0.12 Score=43.56 Aligned_cols=85 Identities=19% Similarity=0.393 Sum_probs=58.5
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCC----C-----CCCceEeeCCCCCC-----CC--C----
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVP----D-----TDNLKFIAGDMFQS-----IP--P---- 252 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~----~-----~~~v~~~~~d~~~~-----~p--~---- 252 (359)
++...|+-+|||--.....+....++++++-+|.|++++.-+ + ..+++++..|+.++ +. +
T Consensus 77 ~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~ 156 (183)
T PF04072_consen 77 PGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPD 156 (183)
T ss_dssp TTESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TT
T ss_pred CCCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCC
Confidence 344599999999999999998877788999999998665432 1 12467899999641 11 2
Q ss_pred -ccEEEEcchhccCCchHHHHHHHHH
Q 018205 253 -ADAFFFKAIFHAFVDEDCLKILKRC 277 (359)
Q Consensus 253 -~D~i~~~~vl~~~~~~~~~~~L~~~ 277 (359)
.-++++-.++.+++.+++..+|+.+
T Consensus 157 ~ptl~i~Egvl~Yl~~~~~~~ll~~i 182 (183)
T PF04072_consen 157 RPTLFIAEGVLMYLSPEQVDALLRAI 182 (183)
T ss_dssp SEEEEEEESSGGGS-HHHHHHHHHHH
T ss_pred CCeEEEEcchhhcCCHHHHHHHHHHh
Confidence 3377788889999999888888765
No 326
>TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR. This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate.
Probab=92.46 E-value=0.24 Score=38.34 Aligned_cols=66 Identities=14% Similarity=0.212 Sum_probs=48.4
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc-cceEeccccccccc
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE-EEAYALTLTSKLFL 109 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~-~~~~~~t~~~~~l~ 109 (359)
...++..|... ++.|..+||+.+++ +...+.+.++-|+..|+++.... +.|. .-.+.+|+.+..+.
T Consensus 30 q~~iL~~l~~~-~~~t~~ela~~~~~---~~~tvs~~l~~Le~~GlI~r~~~---~~D~R~~~v~LT~~G~~~~ 96 (118)
T TIGR02337 30 QWRILRILAEQ-GSMEFTQLANQACI---LRPSLTGILARLERDGLVTRLKA---SNDQRRVYISLTPKGQALY 96 (118)
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHhCC---CchhHHHHHHHHHHCCCEEeccC---CCCCCeeEEEECHhHHHHH
Confidence 34466666653 68999999999999 67899999999999999998641 1110 12488888776554
No 327
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=92.41 E-value=0.11 Score=48.73 Aligned_cols=60 Identities=22% Similarity=0.376 Sum_probs=40.9
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCC------CCCCceEeeCCC
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVP------DTDNLKFIAGDM 246 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------~~~~v~~~~~d~ 246 (359)
..+++.++ ..+ .+|||+=||.|.++..+++.. .+++|+|. +++++.|+ .-++++|+.++.
T Consensus 187 ~~~~~~l~--~~~-~~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~ 253 (352)
T PF05958_consen 187 EQALEWLD--LSK-GDVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA 253 (352)
T ss_dssp HHHHHHCT--T-T-TEEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred HHHHHHhh--cCC-CcEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence 34444444 333 389999999999999999874 47999999 45888776 246788887765
No 328
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=92.36 E-value=0.96 Score=41.97 Aligned_cols=148 Identities=16% Similarity=0.183 Sum_probs=75.1
Q ss_pred cCCCCeEEEeCCCcchHHHHHHH--------HC--------CCCeEEEeeccc--ccccCCC----------CCCc--eE
Q 018205 192 FQGLGSLVDVGGGTGSFARIISE--------AF--------PGIKCTVLDLPH--VVPKVPD----------TDNL--KF 241 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~--------~~--------p~~~~~~~D~~~--~~~~a~~----------~~~v--~~ 241 (359)
.++..+|+|+||.+|..+..+.. ++ |..+++.-|+|. .-...+. ...+ .-
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g 93 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG 93 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence 45678999999999986554432 21 235788889864 2222111 1233 44
Q ss_pred eeCCCCCC-CCC--ccEEEEcchhccCCc-------------------------------------hHHHHHHHHHHHhc
Q 018205 242 IAGDMFQS-IPP--ADAFFFKAIFHAFVD-------------------------------------EDCLKILKRCREAI 281 (359)
Q Consensus 242 ~~~d~~~~-~p~--~D~i~~~~vl~~~~~-------------------------------------~~~~~~L~~~~~~L 281 (359)
+.+.|+.. +|. .|++++++.||.++. .+...+|+.=.+=|
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 173 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL 173 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred cCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 56788773 563 999999999987742 01112333333557
Q ss_pred ccCCCCcEEEEEeeecCCCCcch-----HHHH-HHHhhhhhhhhh----------cCCcccCHHHHHHHHHHcC-Cce
Q 018205 282 ASRGDRGKVIIIDIVINEKKEDA-----QLTE-AKLLYDMLMMVA----------VRGSERTEKEWEKLFLDAG-FSH 342 (359)
Q Consensus 282 ~p~~~gG~lli~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~----------~~g~~~t~~~~~~ll~~aG-f~~ 342 (359)
+| ||++++.-...++..... .+.. ...+.++.-... ..-..++.+|+++.+++.| |++
T Consensus 174 v~---GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gsF~I 248 (334)
T PF03492_consen 174 VP---GGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEEGSFEI 248 (334)
T ss_dssp EE---EEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHHTSEEE
T ss_pred cc---CcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcCCCEEE
Confidence 88 898888887777632110 0100 112222211100 0113579999999999987 444
No 329
>cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.
Probab=92.36 E-value=0.18 Score=34.91 Aligned_cols=44 Identities=16% Similarity=0.357 Sum_probs=36.3
Q ss_pred CcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 39 DIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 39 glf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
.|+..+.. ++.+..||++.+++ +...+.+.|+.|...|++....
T Consensus 11 ~il~~l~~--~~~~~~ei~~~~~i---~~~~i~~~l~~L~~~g~i~~~~ 54 (78)
T cd00090 11 RILRLLLE--GPLTVSELAERLGL---SQSTVSRHLKKLEEAGLVESRR 54 (78)
T ss_pred HHHHHHHH--CCcCHHHHHHHHCc---CHhHHHHHHHHHHHCCCeEEEE
Confidence 34555555 34999999999999 6789999999999999998764
No 330
>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]
Probab=92.22 E-value=0.2 Score=40.85 Aligned_cols=50 Identities=10% Similarity=0.100 Sum_probs=43.9
Q ss_pred CCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccccccc
Q 018205 48 GRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLF 108 (359)
Q Consensus 48 ~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~~l 108 (359)
++++...+||+.+++ .+..+...++-|...|+++... .+.+.+|+.++..
T Consensus 22 ~~~~~~~diA~~L~V---sp~sVt~ml~rL~~~GlV~~~~--------y~gi~LT~~G~~~ 71 (154)
T COG1321 22 KGFARTKDIAERLKV---SPPSVTEMLKRLERLGLVEYEP--------YGGVTLTEKGREK 71 (154)
T ss_pred cCcccHHHHHHHhCC---CcHHHHHHHHHHHHCCCeEEec--------CCCeEEChhhHHH
Confidence 379999999999999 5688899999999999999986 6899999887644
No 331
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=92.06 E-value=0.14 Score=38.75 Aligned_cols=86 Identities=17% Similarity=0.280 Sum_probs=43.5
Q ss_pred ccEEEEcchhc----cCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCH
Q 018205 253 ADAFFFKAIFH----AFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTE 328 (359)
Q Consensus 253 ~D~i~~~~vl~----~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~ 328 (359)
||+|+|..|-- ++.|+-...+++++++.|+| |.++|.|+-... +|......... +......-.+.+
T Consensus 2 yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~p----GG~lilEpQ~w~-----sY~~~~~~~~~-~~~n~~~i~lrP 71 (110)
T PF06859_consen 2 YDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRP----GGILILEPQPWK-----SYKKAKRLSEE-IRENYKSIKLRP 71 (110)
T ss_dssp EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEE----EEEEEEE---HH-----HHHTTTTS-HH-HHHHHHH----G
T ss_pred ccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCC----CCEEEEeCCCcH-----HHHHHhhhhHH-HHhHHhceEECh
Confidence 89999987742 25688899999999999999 455666644321 12111100000 000001112345
Q ss_pred HHHHHHHHH--cCCceeEEEEe
Q 018205 329 KEWEKLFLD--AGFSHFKITPV 348 (359)
Q Consensus 329 ~~~~~ll~~--aGf~~~~~~~~ 348 (359)
+++.+.|.+ .||+..+....
T Consensus 72 ~~F~~~L~~~evGF~~~e~~~~ 93 (110)
T PF06859_consen 72 DQFEDYLLEPEVGFSSVEELGV 93 (110)
T ss_dssp GGHHHHHTSTTT---EEEEE--
T ss_pred HHHHHHHHhcccceEEEEEccc
Confidence 678888887 59998775544
No 332
>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein. Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.
Probab=91.95 E-value=0.19 Score=43.13 Aligned_cols=58 Identities=19% Similarity=0.285 Sum_probs=44.5
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccc
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLT 104 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~ 104 (359)
+..++..|.+. ++.+..+||+.+++ ++..+.+.|+.|...|++.+... ....|.+|+.
T Consensus 145 ~~~IL~~l~~~-g~~s~~eia~~l~i---s~stv~r~L~~Le~~GlI~r~~~------r~~~~~lT~~ 202 (203)
T TIGR01884 145 ELKVLEVLKAE-GEKSVKNIAKKLGK---SLSTISRHLRELEKKGLVEQKGR------KGKRYSLTKL 202 (203)
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEcC------CccEEEeCCC
Confidence 34556666553 58899999999999 67899999999999999998741 0345777764
No 333
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor.
Probab=91.92 E-value=0.23 Score=31.84 Aligned_cols=43 Identities=12% Similarity=0.267 Sum_probs=35.7
Q ss_pred chhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 41 PEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 41 f~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
++.|.+. ++.|+.+|++.+++ ....+.+.|+.|...|++....
T Consensus 6 l~~l~~~-~~~s~~~l~~~l~~---s~~tv~~~l~~L~~~g~i~~~~ 48 (53)
T smart00420 6 LELLAQQ-GKVSVEELAELLGV---SEMTIRRDLNKLEEQGLLTRVH 48 (53)
T ss_pred HHHHHHc-CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEee
Confidence 3344432 57999999999999 6799999999999999998764
No 334
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=91.91 E-value=0.16 Score=41.55 Aligned_cols=46 Identities=15% Similarity=0.046 Sum_probs=39.3
Q ss_pred cCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 38 LDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
..|+++|..+ +++|-++||+.+|+ +...++++|..|...||+...+
T Consensus 17 v~Vl~aL~~~-~~~tdEeLa~~Lgi---~~~~VRk~L~~L~e~~Lv~~~r 62 (158)
T TIGR00373 17 GLVLFSLGIK-GEFTDEEISLELGI---KLNEVRKALYALYDAGLADYKR 62 (158)
T ss_pred HHHHHHHhcc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCceeee
Confidence 4467777754 69999999999999 7899999999999999997553
No 335
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=91.80 E-value=0.21 Score=48.01 Aligned_cols=53 Identities=23% Similarity=0.391 Sum_probs=43.0
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCCC------CCCceEeeCCC
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVPD------TDNLKFIAGDM 246 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~ 246 (359)
++..+.++|+-||||.++..+++. -.+++|+++ ++.++.|+. -.+.+|+++-.
T Consensus 381 l~~~k~llDv~CGTG~iglala~~--~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqa 440 (534)
T KOG2187|consen 381 LPADKTLLDVCCGTGTIGLALARG--VKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQA 440 (534)
T ss_pred CCCCcEEEEEeecCCceehhhhcc--ccceeeeecChhhcchhhhcchhcCccceeeeecch
Confidence 566689999999999999999887 457999999 558887773 45778999844
No 336
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=91.14 E-value=0.25 Score=33.21 Aligned_cols=37 Identities=14% Similarity=0.363 Sum_probs=33.3
Q ss_pred CCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 48 GRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 48 ~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
+++.+..+||+.+|+ .+..+...++-|...|+++.+.
T Consensus 20 ~~~v~~~~iA~~L~v---s~~tvt~ml~~L~~~GlV~~~~ 56 (60)
T PF01325_consen 20 GGPVRTKDIAERLGV---SPPTVTEMLKRLAEKGLVEYEP 56 (60)
T ss_dssp TSSBBHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEET
T ss_pred CCCccHHHHHHHHCC---ChHHHHHHHHHHHHCCCEEecC
Confidence 479999999999999 5789999999999999999874
No 337
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=91.05 E-value=0.22 Score=28.70 Aligned_cols=31 Identities=16% Similarity=0.427 Sum_probs=25.7
Q ss_pred CCCHHHHHHhcCCCCCCcccHHHHHHHHHccCce
Q 018205 50 PITLPQLVSALEINPTKADGLFKLMRLLVHTGFF 83 (359)
Q Consensus 50 ~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll 83 (359)
|+|-+|||+.+|+ ..+.+.|.|..|...|++
T Consensus 2 ~mtr~diA~~lG~---t~ETVSR~l~~l~~~glI 32 (32)
T PF00325_consen 2 PMTRQDIADYLGL---TRETVSRILKKLERQGLI 32 (32)
T ss_dssp E--HHHHHHHHTS----HHHHHHHHHHHHHTTSE
T ss_pred CcCHHHHHHHhCC---cHHHHHHHHHHHHHcCCC
Confidence 5788999999999 579999999999998875
No 338
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=91.05 E-value=0.54 Score=43.69 Aligned_cols=109 Identities=13% Similarity=0.168 Sum_probs=73.9
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC---------------CCCCceEeeCCC
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP---------------DTDNLKFIAGDM 246 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~---------------~~~~v~~~~~d~ 246 (359)
.+.+.+. ..+.....|+|+|.|.....++.-.....-+|+++.. .-+.|. ....++.+.++|
T Consensus 183 si~dEl~--~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf 260 (419)
T KOG3924|consen 183 SIVDELK--LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSF 260 (419)
T ss_pred HHHHHhc--cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeeccccc
Confidence 3444444 6677899999999999998887755444677877722 111111 256788999999
Q ss_pred CCC------CCCccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 018205 247 FQS------IPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINE 299 (359)
Q Consensus 247 ~~~------~p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~ 299 (359)
..+ .+.+++|+++++.. .++.. .=++++..-+++ |-+++-.++..+-
T Consensus 261 ~~~~~v~eI~~eatvi~vNN~~F--dp~L~-lr~~eil~~ck~---gtrIiS~~~L~~r 313 (419)
T KOG3924|consen 261 LDPKRVTEIQTEATVIFVNNVAF--DPELK-LRSKEILQKCKD---GTRIISSKPLVPR 313 (419)
T ss_pred CCHHHHHHHhhcceEEEEecccC--CHHHH-HhhHHHHhhCCC---cceEecccccccc
Confidence 653 24599999999873 33332 234477777888 7888877777763
No 339
>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=91.02 E-value=0.25 Score=38.08 Aligned_cols=51 Identities=24% Similarity=0.321 Sum_probs=44.1
Q ss_pred HHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 33 KCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 33 ~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
+..+...|.+.+.++ |.+|+.+++..+|+ +...+.++++.|++.|-|...+
T Consensus 10 r~eLk~rIvElVRe~-GRiTi~ql~~~TGa---sR~Tvk~~lreLVa~G~l~~~G 60 (127)
T PF06163_consen 10 REELKARIVELVREH-GRITIKQLVAKTGA---SRNTVKRYLRELVARGDLYRHG 60 (127)
T ss_pred HHHHHHHHHHHHHHc-CCccHHHHHHHHCC---CHHHHHHHHHHHHHcCCeEeCC
Confidence 345667788888875 79999999999999 6899999999999999998874
No 340
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=90.85 E-value=2.5 Score=39.57 Aligned_cols=107 Identities=12% Similarity=0.193 Sum_probs=71.7
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCC--CeEEEeeccc-ccccCC------CCCCceEeeCCCCC---CCC---CccEE
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPG--IKCTVLDLPH-VVPKVP------DTDNLKFIAGDMFQ---SIP---PADAF 256 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~--~~~~~~D~~~-~~~~a~------~~~~v~~~~~d~~~---~~p---~~D~i 256 (359)
..++.+|||..++.|.=+..+++..++ ..++++|.+. -++... ...++..+..|... ..+ .||.|
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence 456799999999999999999998875 5679999954 333222 13446777777632 122 28988
Q ss_pred EEc------chh-------ccCCchH-------HHHHHHHHHHhcccCCCCcEEEEEeeecCCCC
Q 018205 257 FFK------AIF-------HAFVDED-------CLKILKRCREAIASRGDRGKVIIIDIVINEKK 301 (359)
Q Consensus 257 ~~~------~vl-------~~~~~~~-------~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~ 301 (359)
++- .++ ..+...+ -.++|+.+.+.|+| ||.|+..........
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~---GG~LVYSTCS~~~eE 295 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKP---GGVLVYSTCSLTPEE 295 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEccCCchhc
Confidence 831 222 2333222 24789999999999 888888777665443
No 341
>smart00529 HTH_DTXR Helix-turn-helix diphteria tox regulatory element. iron dependent repressor
Probab=90.74 E-value=0.31 Score=36.04 Aligned_cols=45 Identities=11% Similarity=0.230 Sum_probs=38.5
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccccccc
Q 018205 53 LPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLF 108 (359)
Q Consensus 53 ~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~~l 108 (359)
+.+||+.+++ +...+.+.++.|+..|++.... +..|.+|+.+..+
T Consensus 2 ~~ela~~l~i---s~stvs~~l~~L~~~glI~r~~--------~~~~~lT~~g~~~ 46 (96)
T smart00529 2 TSEIAERLNV---SPPTVTQMLKKLEKDGLVEYEP--------YRGITLTEKGRRL 46 (96)
T ss_pred HHHHHHHhCC---ChHHHHHHHHHHHHCCCEEEcC--------CCceEechhHHHH
Confidence 5689999999 6899999999999999999985 4578888877544
No 342
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=90.71 E-value=0.24 Score=38.07 Aligned_cols=51 Identities=18% Similarity=0.307 Sum_probs=39.2
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCC--CCCcccHHHHHHHHHccCceeeec
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEIN--PTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~--~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
+.-|++.|...+++.|++||.+.+.-. ..+...+.|.|+.|++.|++.+..
T Consensus 3 R~~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~~~ 55 (116)
T cd07153 3 RLAILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVREIE 55 (116)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEEEE
Confidence 344677776655789999999998321 116788999999999999998764
No 343
>COG4190 Predicted transcriptional regulator [Transcription]
Probab=90.50 E-value=0.3 Score=37.87 Aligned_cols=51 Identities=14% Similarity=0.286 Sum_probs=43.6
Q ss_pred HHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 33 KCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 33 ~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
-+=-.+.|...|++. +|.|+.|+|+.+|= +...+.|-|+.|+..|++..+.
T Consensus 62 Lsp~nleLl~~Ia~~-~P~Si~ElAe~vgR---dv~nvhr~Ls~l~~~GlI~fe~ 112 (144)
T COG4190 62 LSPRNLELLELIAQE-EPASINELAELVGR---DVKNVHRTLSTLADLGLIFFEE 112 (144)
T ss_pred hChhHHHHHHHHHhc-CcccHHHHHHHhCc---chHHHHHHHHHHHhcCeEEEec
Confidence 334456778888875 79999999999998 7899999999999999999875
No 344
>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain. This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins.
Probab=90.49 E-value=0.48 Score=35.13 Aligned_cols=45 Identities=4% Similarity=0.039 Sum_probs=38.5
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccc
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTL 103 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~ 103 (359)
.++|-.|||+.+|+ +...+.|.|+.|+..|+|...+. .+.|..+.
T Consensus 46 ~~is~~eLa~~~g~---sr~tVsr~L~~Le~~GlI~r~~~-------~~~~~~n~ 90 (95)
T TIGR01610 46 DRVTATVIAELTGL---SRTHVSDAIKSLARRRIIFRQGM-------MGIVGVNT 90 (95)
T ss_pred CccCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeeeecC-------CceeecCC
Confidence 59999999999999 67899999999999999997742 37777763
No 345
>PRK03573 transcriptional regulator SlyA; Provisional
Probab=90.38 E-value=0.26 Score=39.62 Aligned_cols=64 Identities=19% Similarity=0.231 Sum_probs=44.5
Q ss_pred cchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCcc-ceEeccccccccc
Q 018205 40 IPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEE-EAYALTLTSKLFL 109 (359)
Q Consensus 40 lf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~-~~~~~t~~~~~l~ 109 (359)
++..|...+++.|..+||+.+++ +...+.+.++.|+..|+|++... +.|.. -...+|+.++.+.
T Consensus 36 vL~~l~~~~~~~t~~eLa~~l~~---~~~tvt~~v~~Le~~GlV~r~~~---~~DrR~~~l~LT~~G~~~~ 100 (144)
T PRK03573 36 TLHNIHQLPPEQSQIQLAKAIGI---EQPSLVRTLDQLEEKGLISRQTC---ASDRRAKRIKLTEKAEPLI 100 (144)
T ss_pred HHHHHHHcCCCCCHHHHHHHhCC---ChhhHHHHHHHHHHCCCEeeecC---CCCcCeeeeEEChHHHHHH
Confidence 34445432346899999999999 67899999999999999998741 01100 1366777665444
No 346
>PRK11512 DNA-binding transcriptional repressor MarR; Provisional
Probab=90.16 E-value=0.26 Score=39.61 Aligned_cols=64 Identities=17% Similarity=0.173 Sum_probs=45.5
Q ss_pred CcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCcc-ceEeccccccccc
Q 018205 39 DIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEE-EAYALTLTSKLFL 109 (359)
Q Consensus 39 glf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~-~~~~~t~~~~~l~ 109 (359)
.|+..|.. .+++|..+||+.+++ +...+.+.++.|+..|++.+... +.|.. -...+|+.++.+.
T Consensus 44 ~vL~~l~~-~~~~t~~eLa~~l~i---~~~tvsr~l~~Le~~GlI~R~~~---~~DrR~~~l~LT~~G~~~~ 108 (144)
T PRK11512 44 KVLCSIRC-AACITPVELKKVLSV---DLGALTRMLDRLVCKGWVERLPN---PNDKRGVLVKLTTSGAAIC 108 (144)
T ss_pred HHHHHHHH-cCCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeccC---cccCCeeEeEEChhHHHHH
Confidence 34555654 268999999999999 68999999999999999998741 11101 1256666665443
No 347
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=90.16 E-value=0.24 Score=37.59 Aligned_cols=47 Identities=17% Similarity=0.298 Sum_probs=39.6
Q ss_pred HhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeee
Q 018205 36 VELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTA 86 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~ 86 (359)
.+..|+..|.+. ++.|..+||+.+|+ ++..+.+.++.|...|++...
T Consensus 4 ~D~~il~~L~~~-~~~~~~~la~~l~~---s~~tv~~~l~~L~~~g~i~~~ 50 (108)
T smart00344 4 IDRKILEELQKD-ARISLAELAKKVGL---SPSTVHNRVKRLEEEGVIKGY 50 (108)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeece
Confidence 345667777763 68999999999999 689999999999999999843
No 348
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=89.50 E-value=0.42 Score=42.71 Aligned_cols=101 Identities=16% Similarity=0.196 Sum_probs=67.3
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCC-eEEEeeccc-ccccCC----------CCCCceEeeCCCCC---CC--CCcc
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGI-KCTVLDLPH-VVPKVP----------DTDNLKFIAGDMFQ---SI--PPAD 254 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~~~-~~~~a~----------~~~~v~~~~~d~~~---~~--p~~D 254 (359)
.+.+++++-||+|.|.+.+...+. +.+ ++..+|+.. +++..+ +.++|.+.-||-+. .. ..||
T Consensus 119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence 457899999999999999988776 544 577888855 555443 37899999998743 22 3499
Q ss_pred EEEEcchhccCCch--HHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 255 AFFFKAIFHAFVDE--DCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 255 ~i~~~~vl~~~~~~--~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
+|+.-..=-..+-. -...++.-+.++||+ +|.+++..-.
T Consensus 198 Vii~dssdpvgpa~~lf~~~~~~~v~~aLk~---dgv~~~q~ec 238 (337)
T KOG1562|consen 198 VIITDSSDPVGPACALFQKPYFGLVLDALKG---DGVVCTQGEC 238 (337)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHHhhCC---CcEEEEecce
Confidence 99853211111100 012456667788998 7887776543
No 349
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=89.37 E-value=0.53 Score=42.31 Aligned_cols=63 Identities=21% Similarity=0.359 Sum_probs=53.4
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCC-eEEEeec-ccccccCCC-----CCCceEeeCCC
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGI-KCTVLDL-PHVVPKVPD-----TDNLKFIAGDM 246 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~ 246 (359)
+.+++.+. ..+....+|.=-|.|.++..+++++|.. +++++|. |.+++.|++ .+|++++..+|
T Consensus 13 ~E~i~~L~--~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F 82 (314)
T COG0275 13 NEVVELLA--PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNF 82 (314)
T ss_pred HHHHHhcc--cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcH
Confidence 67777777 5567999999999999999999999866 5999999 568888873 56899999887
No 350
>COG2512 Predicted membrane-associated trancriptional regulator [Transcription]
Probab=88.86 E-value=0.28 Score=43.50 Aligned_cols=48 Identities=25% Similarity=0.419 Sum_probs=42.0
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
+..+.+.|.++||.++=+||.+++|+ ++..+.|+|+-|+.+|++++.+
T Consensus 197 e~~il~~i~~~GGri~Q~eL~r~lgl---sktTvsR~L~~LEk~GlIe~~K 244 (258)
T COG2512 197 EKEILDLIRERGGRITQAELRRALGL---SKTTVSRILRRLEKRGLIEKEK 244 (258)
T ss_pred HHHHHHHHHHhCCEEeHHHHHHhhCC---ChHHHHHHHHHHHhCCceEEEE
Confidence 34566777777888999999999999 6899999999999999999876
No 351
>COG3432 Predicted transcriptional regulator [Transcription]
Probab=88.58 E-value=0.16 Score=37.36 Aligned_cols=54 Identities=20% Similarity=0.336 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccccccc
Q 018205 48 GRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFL 109 (359)
Q Consensus 48 ~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
+++....-|.-.+++ +-......++.|+..|++....++. ...|.+|+.+..|.
T Consensus 29 ~~~~~~Tri~y~aNl---ny~~~~~yi~~L~~~Gli~~~~~~~-----~~~y~lT~KG~~fl 82 (95)
T COG3432 29 EGGIGITRIIYGANL---NYKRAQKYIEMLVEKGLIIKQDNGR-----RKVYELTEKGKRFL 82 (95)
T ss_pred CCCCCceeeeeecCc---CHHHHHHHHHHHHhCCCEEeccCCc-----cceEEEChhHHHHH
Confidence 478888999999999 7899999999999999777664210 12699999987664
No 352
>PRK14165 winged helix-turn-helix domain-containing protein/riboflavin kinase; Provisional
Probab=88.09 E-value=0.69 Score=39.92 Aligned_cols=53 Identities=11% Similarity=0.174 Sum_probs=42.5
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccccccc
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFL 109 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
..+|..+||+.+++ +...+.|.|+.|+..|++++.... ....+++|+.+..+.
T Consensus 20 ~~IS~~eLA~~L~i---S~~Tvsr~Lk~LEe~GlI~R~~~~-----r~~~v~LTekG~~ll 72 (217)
T PRK14165 20 VKISSSEFANHTGT---SSKTAARILKQLEDEGYITRTIVP-----RGQLITITEKGLDVL 72 (217)
T ss_pred CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEEcC-----CceEEEECHHHHHHH
Confidence 46899999999999 689999999999999999987421 134577787776444
No 353
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=88.03 E-value=5.4 Score=32.91 Aligned_cols=120 Identities=19% Similarity=0.210 Sum_probs=71.7
Q ss_pred EeCCCcchHHHHHHHHCC-CC--eEEEeeccc-ccccCC---------CCCCceEeeC-CCCC---CC--C--CccEEEE
Q 018205 200 DVGGGTGSFARIISEAFP-GI--KCTVLDLPH-VVPKVP---------DTDNLKFIAG-DMFQ---SI--P--PADAFFF 258 (359)
Q Consensus 200 DvG~G~G~~~~~l~~~~p-~~--~~~~~D~~~-~~~~a~---------~~~~v~~~~~-d~~~---~~--p--~~D~i~~ 258 (359)
=||=|.=.++..|++.++ .. -+|..|-.+ +.+... +..++.++.+ |..+ .. . .||.|+.
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEE
Confidence 467788889999999987 44 455566533 444433 1334444433 5532 12 1 3999997
Q ss_pred cchhcc-----------CCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccC
Q 018205 259 KAIFHA-----------FVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERT 327 (359)
Q Consensus 259 ~~vl~~-----------~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t 327 (359)
++=-.- ....-...+++.+.++|++ +|.|.|.-..... ++
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~---~G~IhVTl~~~~p--------------------------y~ 132 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKP---DGEIHVTLKDGQP--------------------------YD 132 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCCCC--------------------------Cc
Confidence 543221 0122345788899999999 8988885433221 11
Q ss_pred HHHHHHHHHHcCCceeEEEEe
Q 018205 328 EKEWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 328 ~~~~~~ll~~aGf~~~~~~~~ 348 (359)
.=.+.++.+++||...+..+.
T Consensus 133 ~W~i~~lA~~~gl~l~~~~~F 153 (166)
T PF10354_consen 133 SWNIEELAAEAGLVLVRKVPF 153 (166)
T ss_pred cccHHHHHHhcCCEEEEEecC
Confidence 112446677789988887766
No 354
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=87.94 E-value=2.2 Score=41.90 Aligned_cols=95 Identities=15% Similarity=0.176 Sum_probs=60.7
Q ss_pred CCCeEEEeCCCc-chHHHHHHHHCCCCeEEEeec-ccccccCCCCCCceEeeCCCC------------------------
Q 018205 194 GLGSLVDVGGGT-GSFARIISEAFPGIKCTVLDL-PHVVPKVPDTDNLKFIAGDMF------------------------ 247 (359)
Q Consensus 194 ~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~------------------------ 247 (359)
++.+|+=+|||. |..+...++.. +.+++++|. ++..+.+++. ..+++..|..
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~l-GA~V~a~D~~~~rle~aesl-GA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~ 241 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSL-GAIVRAFDTRPEVAEQVESM-GAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMAL 241 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc-CCeEEEeccccccccccchhhhcchhHHHHHHHH
Confidence 578999999996 67777778777 568999999 4466666542 2222211110
Q ss_pred -C-CCCCccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 018205 248 -Q-SIPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDI 295 (359)
Q Consensus 248 -~-~~p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~ 295 (359)
. ...++|+++..-....-+.+ ..+.++..+.++| ||.++.+..
T Consensus 242 ~~~~~~gaDVVIetag~pg~~aP--~lit~~~v~~mkp---GgvIVdvg~ 286 (509)
T PRK09424 242 FAEQAKEVDIIITTALIPGKPAP--KLITAEMVASMKP---GSVIVDLAA 286 (509)
T ss_pred HHhccCCCCEEEECCCCCcccCc--chHHHHHHHhcCC---CCEEEEEcc
Confidence 0 01358999876543222122 1246999999999 888777654
No 355
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=87.94 E-value=1 Score=39.94 Aligned_cols=36 Identities=19% Similarity=0.439 Sum_probs=26.7
Q ss_pred CCeEEEeCCCcchHHHHHHHHCC--------CCeEEEeeccccc
Q 018205 195 LGSLVDVGGGTGSFARIISEAFP--------GIKCTVLDLPHVV 230 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~p--------~~~~~~~D~~~~~ 230 (359)
+.+|+|+|+|+|.++..+++... .++++.+|.+..+
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L 62 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYL 62 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHH
Confidence 47999999999999988877553 3589999996533
No 356
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=87.86 E-value=2.6 Score=38.90 Aligned_cols=93 Identities=15% Similarity=0.184 Sum_probs=63.7
Q ss_pred cCCCCeEEEeCCC-cchHHHHHHHHCCCCeEEEeeccc-ccccCCCCCCceEeeCC---CCCCCCC-ccEEEEcchhccC
Q 018205 192 FQGLGSLVDVGGG-TGSFARIISEAFPGIKCTVLDLPH-VVPKVPDTDNLKFIAGD---MFQSIPP-ADAFFFKAIFHAF 265 (359)
Q Consensus 192 ~~~~~~vlDvG~G-~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~~v~~~~~d---~~~~~p~-~D~i~~~~vl~~~ 265 (359)
..+..+|+=+|+| .|.++..+++.. +.+++++|.++ -.+.|++...-.++... ..+...+ +|+|+..-. .
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~-ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~-- 239 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAM-GAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-P-- 239 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc-CCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-h--
Confidence 5567888888877 456888888877 48999999965 66666654444444432 2222333 898886443 1
Q ss_pred CchHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 018205 266 VDEDCLKILKRCREAIASRGDRGKVIIIDIVI 297 (359)
Q Consensus 266 ~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~ 297 (359)
..+....+.|++ +|+++++-...
T Consensus 240 ------~~~~~~l~~l~~---~G~~v~vG~~~ 262 (339)
T COG1064 240 ------ATLEPSLKALRR---GGTLVLVGLPG 262 (339)
T ss_pred ------hhHHHHHHHHhc---CCEEEEECCCC
Confidence 256677778998 89999988764
No 357
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=87.76 E-value=6.5 Score=30.04 Aligned_cols=87 Identities=18% Similarity=0.280 Sum_probs=57.6
Q ss_pred CCCeEEEeCCCcchHH-HHHHHHCCCCeEEEeecccccccCCCCCCceEeeCCCCCCC----CCccEEEEcchhccCCch
Q 018205 194 GLGSLVDVGGGTGSFA-RIISEAFPGIKCTVLDLPHVVPKVPDTDNLKFIAGDMFQSI----PPADAFFFKAIFHAFVDE 268 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~-~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~----p~~D~i~~~~vl~~~~~~ 268 (359)
..++|++||-|.=... ..|+++ ++.++++|+.+- .|. ..++++.-|++++- .++|+|.+-. +.+
T Consensus 13 ~~gkVvEVGiG~~~~VA~~L~e~--g~dv~atDI~~~--~a~--~g~~~v~DDitnP~~~iY~~A~lIYSiR-----ppp 81 (129)
T COG1255 13 ARGKVVEVGIGFFLDVAKRLAER--GFDVLATDINEK--TAP--EGLRFVVDDITNPNISIYEGADLIYSIR-----PPP 81 (129)
T ss_pred cCCcEEEEccchHHHHHHHHHHc--CCcEEEEecccc--cCc--ccceEEEccCCCccHHHhhCccceeecC-----CCH
Confidence 4569999999976544 444444 578999999543 332 67899999998752 2588887633 445
Q ss_pred HHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 269 DCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 269 ~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
+....+-.+.+.++ ..++|.-..
T Consensus 82 El~~~ildva~aVg-----a~l~I~pL~ 104 (129)
T COG1255 82 ELQSAILDVAKAVG-----APLYIKPLT 104 (129)
T ss_pred HHHHHHHHHHHhhC-----CCEEEEecC
Confidence 55556666666664 345554433
No 358
>COG1733 Predicted transcriptional regulators [Transcription]
Probab=87.73 E-value=1.6 Score=33.83 Aligned_cols=79 Identities=15% Similarity=0.175 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhcCcchhcccCCCCCCHHHHHHhcC-CCCCCcccHHHHHHHHHccCceeeeccccccc
Q 018205 15 AQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALE-INPTKADGLFKLMRLLVHTGFFSTANVQSAQQ 93 (359)
Q Consensus 15 ~~~~l~~~~~g~~~~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~-~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~ 93 (359)
+....++++.+-|..-+|....+ ++.-..||-+.++ + .+..|.+-|+.|+..|++++..-...|
T Consensus 12 ~~~~~l~~ig~kW~~lIl~~L~~-----------g~~RF~eL~r~i~~I---s~k~Ls~~Lk~Le~~Glv~R~~~~~~P- 76 (120)
T COG1733 12 PVEEALEVIGGKWTLLILRDLFD-----------GPKRFNELRRSIGGI---SPKMLSRRLKELEEDGLVERVVYPEEP- 76 (120)
T ss_pred CHHHHHHHHcCccHHHHHHHHhc-----------CCCcHHHHHHHcccc---CHHHHHHHHHHHHHCCCEEeeecCCCC-
Confidence 36677888888888777765443 5889999999998 8 679999999999999999987521111
Q ss_pred CccceEeccccccccc
Q 018205 94 QEEEAYALTLTSKLFL 109 (359)
Q Consensus 94 ~~~~~~~~t~~~~~l~ 109 (359)
..-.|++|+.++.+.
T Consensus 77 -prveY~LT~~G~~L~ 91 (120)
T COG1733 77 -PRVEYRLTEKGRDLL 91 (120)
T ss_pred -ceeEEEEhhhHHHHH
Confidence 234699998876554
No 359
>PF02319 E2F_TDP: E2F/DP family winged-helix DNA-binding domain; InterPro: IPR003316 The mammalian transcription factor E2F plays an important role in regulating the expression of genes that are required for passage through the cell cycle. Multiple E2F family members have been identified that bind to DNA as heterodimers, interacting with proteins known as DP - the dimerisation partners [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005667 transcription factor complex; PDB: 1CF7_B.
Probab=87.72 E-value=0.51 Score=32.90 Aligned_cols=38 Identities=16% Similarity=0.461 Sum_probs=32.9
Q ss_pred CCCCHHHHHHhc---CCCCCCcccHHHHHHHHHccCceeeec
Q 018205 49 RPITLPQLVSAL---EINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 49 ~~~t~~ela~~~---~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
+.+++.++|+.+ +... ..+++..++++|++.|++++..
T Consensus 23 ~~i~l~~ia~~l~~~~~k~-~~RRlYDI~NVLealgli~K~~ 63 (71)
T PF02319_consen 23 KSISLNEIADKLISENVKT-QRRRLYDIINVLEALGLIEKQS 63 (71)
T ss_dssp TEEEHHHHHHHCHHHCCHH-HCHHHHHHHHHHHHCTSEEEEE
T ss_pred CcccHHHHHHHHccccccc-ccchhhHHHHHHHHhCceeecC
Confidence 689999999999 8721 3699999999999999999964
No 360
>PF14394 DUF4423: Domain of unknown function (DUF4423)
Probab=87.54 E-value=1.9 Score=35.83 Aligned_cols=63 Identities=14% Similarity=0.104 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhcCcchhcccCCCCCCHHHHHHhc--CCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccc
Q 018205 26 YVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSAL--EINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTL 103 (359)
Q Consensus 26 ~~~~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~--~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~ 103 (359)
-|...+++..+.+.= +..++++||+++ ++ ...-++.-|+.|+..|++++.+ +|.|..|.
T Consensus 23 ~W~~~~ir~l~~l~~--------~~~d~~~iak~l~p~i---s~~ev~~sL~~L~~~gli~k~~--------~g~y~~t~ 83 (171)
T PF14394_consen 23 SWYHPAIRELLPLMP--------FAPDPEWIAKRLRPKI---SAEEVRDSLEFLEKLGLIKKDG--------DGKYVQTD 83 (171)
T ss_pred hhHHHHHHHHhhcCC--------CCCCHHHHHHHhcCCC---CHHHHHHHHHHHHHCCCeEECC--------CCcEEEec
Confidence 344445555444332 244899999999 99 6788999999999999999997 67999887
Q ss_pred cccc
Q 018205 104 TSKL 107 (359)
Q Consensus 104 ~~~~ 107 (359)
.+-.
T Consensus 84 ~~l~ 87 (171)
T PF14394_consen 84 KSLT 87 (171)
T ss_pred ceee
Confidence 6543
No 361
>COG1378 Predicted transcriptional regulators [Transcription]
Probab=87.43 E-value=0.72 Score=40.78 Aligned_cols=60 Identities=12% Similarity=0.140 Sum_probs=46.2
Q ss_pred HhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccc
Q 018205 36 VELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTS 105 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~ 105 (359)
.|..++-+|-.. |++|+.|||+.+|+ +...+..+|+.|...|+++...+ .+..|+.-+-.
T Consensus 17 yEa~vY~aLl~~-g~~tA~eis~~sgv---P~~kvY~vl~sLe~kG~v~~~~g------~P~~y~av~p~ 76 (247)
T COG1378 17 YEAKVYLALLCL-GEATAKEISEASGV---PRPKVYDVLRSLEKKGLVEVIEG------RPKKYRAVPPE 76 (247)
T ss_pred HHHHHHHHHHHh-CCccHHHHHHHcCC---CchhHHHHHHHHHHCCCEEeeCC------CCceEEeCCHH
Confidence 344445555443 79999999999999 78999999999999999998742 25678866543
No 362
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=87.26 E-value=1.8 Score=44.34 Aligned_cols=93 Identities=18% Similarity=0.279 Sum_probs=55.1
Q ss_pred CCCeEEEeCCCcchHHHHHHHHC-------C-----CCeEEEeec-c---cccccC----------------------C-
Q 018205 194 GLGSLVDVGGGTGSFARIISEAF-------P-----GIKCTVLDL-P---HVVPKV----------------------P- 234 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~-------p-----~~~~~~~D~-~---~~~~~a----------------------~- 234 (359)
+.-+|+|+|=|+|.-.....+.+ | .++++.+|. | +.+..+ .
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 45799999999998555554333 3 468888886 2 111100 0
Q ss_pred ------CCC--CceEeeCCCCCC---CC-CccEEEEcchh-----ccCCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 018205 235 ------DTD--NLKFIAGDMFQS---IP-PADAFFFKAIF-----HAFVDEDCLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 235 ------~~~--~v~~~~~d~~~~---~p-~~D~i~~~~vl-----~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
... ++++..+|+.+. +. .+|++++-..- ..|+ ..+++++.++++| ||.+.-.
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~----~~~~~~l~~~~~~---~~~~~t~ 205 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWS----PNLFNALARLARP---GATLATF 205 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhcc----HHHHHHHHHHhCC---CCEEEEe
Confidence 012 334666777442 22 38888863211 1243 3489999999998 7766643
No 363
>PRK10742 putative methyltransferase; Provisional
Probab=87.22 E-value=0.86 Score=40.03 Aligned_cols=74 Identities=18% Similarity=0.328 Sum_probs=50.8
Q ss_pred HHHHHhcccccCCCC--eEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC-------------C--CCCceEee
Q 018205 182 NLIVKDCQPIFQGLG--SLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP-------------D--TDNLKFIA 243 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~--~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~-------------~--~~~v~~~~ 243 (359)
+.+++... ++++. +|||.=+|.|..+..++.. +++++++|.+. +....+ . ..|++++.
T Consensus 76 ~~l~kAvg--lk~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~ 151 (250)
T PRK10742 76 EAVAKAVG--IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH 151 (250)
T ss_pred cHHHHHhC--CCCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEe
Confidence 35666665 55555 9999999999999999988 78899999854 332111 0 14677888
Q ss_pred CCCCC---CCC-CccEEEEc
Q 018205 244 GDMFQ---SIP-PADAFFFK 259 (359)
Q Consensus 244 ~d~~~---~~p-~~D~i~~~ 259 (359)
+|..+ ..+ .||+|++-
T Consensus 152 ~da~~~L~~~~~~fDVVYlD 171 (250)
T PRK10742 152 ASSLTALTDITPRPQVVYLD 171 (250)
T ss_pred CcHHHHHhhCCCCCcEEEEC
Confidence 87743 222 48888743
No 364
>PHA02943 hypothetical protein; Provisional
Probab=87.19 E-value=0.84 Score=36.45 Aligned_cols=44 Identities=9% Similarity=0.091 Sum_probs=36.7
Q ss_pred CcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 39 DIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 39 glf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
.|++.|.. |..|..|||+++|+ +-...+-.|..|+..|.+.+.+
T Consensus 15 eILE~Lk~--G~~TtseIAkaLGl---S~~qa~~~LyvLErEG~VkrV~ 58 (165)
T PHA02943 15 KTLRLLAD--GCKTTSRIANKLGV---SHSMARNALYQLAKEGMVLKVE 58 (165)
T ss_pred HHHHHHhc--CCccHHHHHHHHCC---CHHHHHHHHHHHHHcCceEEEe
Confidence 34556643 78999999999999 5678889999999999999875
No 365
>PRK15431 ferrous iron transport protein FeoC; Provisional
Probab=87.14 E-value=0.88 Score=32.09 Aligned_cols=42 Identities=10% Similarity=0.121 Sum_probs=36.9
Q ss_pred hhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 42 EVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 42 ~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
|.|... +.+++.+||..+++ +++.++.+|..|+.+|-+++..
T Consensus 9 d~l~~~-gr~s~~~Ls~~~~~---p~~~VeaMLe~l~~kGkverv~ 50 (78)
T PRK15431 9 DLLALR-GRMEAAQISQTLNT---PQPMINAMLQQLESMGKAVRIQ 50 (78)
T ss_pred HHHHHc-CcccHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEeec
Confidence 455554 79999999999999 6899999999999999999874
No 366
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=86.84 E-value=3.6 Score=32.06 Aligned_cols=85 Identities=20% Similarity=0.324 Sum_probs=44.8
Q ss_pred CCCeEEEeCCCcch-HHHHHHHHCCCCeEEEeecccccccCCCCCCceEeeCCCCCCCC----CccEEEEcchhccCCch
Q 018205 194 GLGSLVDVGGGTGS-FARIISEAFPGIKCTVLDLPHVVPKVPDTDNLKFIAGDMFQSIP----PADAFFFKAIFHAFVDE 268 (359)
Q Consensus 194 ~~~~vlDvG~G~G~-~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~p----~~D~i~~~~vl~~~~~~ 268 (359)
...+|++||-|.=. .+..|.+. +..++++|+.+. .+ ..++.++.-|++++-. ++|+|.+.+- ..
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~--G~dV~~tDi~~~--~a--~~g~~~v~DDif~P~l~iY~~a~lIYSiRP-----P~ 81 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKER--GFDVIATDINPR--KA--PEGVNFVVDDIFNPNLEIYEGADLIYSIRP-----PP 81 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHH--S-EEEEE-SS-S--------STTEE---SSS--HHHHTTEEEEEEES-------T
T ss_pred CCCcEEEECcCCCHHHHHHHHHc--CCcEEEEECccc--cc--ccCcceeeecccCCCHHHhcCCcEEEEeCC-----Ch
Confidence 35699999999765 45555555 589999999443 22 2689999999988533 5888887553 33
Q ss_pred HHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 269 DCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 269 ~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
+...-+.++.+.. |.-++|..
T Consensus 82 El~~~il~lA~~v-----~adlii~p 102 (127)
T PF03686_consen 82 ELQPPILELAKKV-----GADLIIRP 102 (127)
T ss_dssp TSHHHHHHHHHHH-----T-EEEEE-
T ss_pred HHhHHHHHHHHHh-----CCCEEEEC
Confidence 4444555555554 34566544
No 367
>PF13730 HTH_36: Helix-turn-helix domain
Probab=86.71 E-value=0.66 Score=30.26 Aligned_cols=30 Identities=13% Similarity=0.228 Sum_probs=27.7
Q ss_pred CCHHHHHHhcCCCCCCcccHHHHHHHHHccCce
Q 018205 51 ITLPQLVSALEINPTKADGLFKLMRLLVHTGFF 83 (359)
Q Consensus 51 ~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll 83 (359)
.|.+.||+.+|+ ..+.+.+.++.|+..|++
T Consensus 26 pS~~~la~~~g~---s~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 26 PSQETLAKDLGV---SRRTVQRAIKELEEKGLI 55 (55)
T ss_pred cCHHHHHHHHCc---CHHHHHHHHHHHHHCcCC
Confidence 489999999999 689999999999999986
No 368
>PF03444 HrcA_DNA-bdg: Winged helix-turn-helix transcription repressor, HrcA DNA-binding; InterPro: IPR005104 Prokaryotic cells have a defence mechanism against a sudden heat-shock stress. Commonly, they induce a set of proteins that protect cellular proteins from being denatured by heat. Among such proteins are the GroE and DnaK chaperones whose transcription is regulated by a heat-shock repressor protein HrcA. HrcA is a winged helix-turn-helix repressor that negatively regulates the transcription of dnaK and groE operons by binding the upstream CIRCE (controlling inverted repeat of chaperone expression) element. In Bacillus subtilis this element is a perfect 9 base pair inverted repeat separated by a 9 base pair spacer. The crystal structure of a heat-inducible transcriptional repressor, HrcA, from Thermotoga maritima has been reported at 2.2A resolution. HrcA is composed of three domains: an N-terminal winged helix-turn-helix domain (WHTH), a GAF-like domain, and an inserted dimerizing domain (IDD). The IDD shows a unique structural fold with an anti-parallel beta-sheet composed of three beta-strands sided by four alpha-helices. HrcA crystallises as a dimer, which is formed through hydrophobic contact between the IDDs and a limited contact that involves conserved residues between the GAF-like domains []. The structural studies suggest that the inactive form of HrcA is the dimer and this is converted to its DNA-binding form by interaction with GroEL, which binds to a conserved C-terminal sequence region [, ]. Comparison of the HrcA-CIRCE complexes from B. subtilis and Bacillus thermoglucosidasius (Geobacillus thermoglucosidasius), which grow at vastly different ranges of temperature shows that the thermostability profiles were consistent with the difference in the growth temperatures suggesting that HrcA can function as a thermosensor to detect temperature changes in cells []. Any increase in temperature causes the dissociation of the HrcA from the CIRCE complex with the concomitant activation of transcription of the groE and dnaK operons. This domain represents the winged helix-turn-helix DNA-binding domain which is located close to the N terminus of HrcA. This domain is also found at the N terminus of a set of uncharacterised proteins that have two C-terminal CBS domains. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=86.57 E-value=0.92 Score=32.01 Aligned_cols=49 Identities=14% Similarity=0.116 Sum_probs=38.2
Q ss_pred CCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccc
Q 018205 48 GRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTS 105 (359)
Q Consensus 48 ~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~ 105 (359)
+.|+..++||+.+++ +...++.-+..|.++|||+.... ..+.|..|..+
T Consensus 21 ~~PVgSk~ia~~l~~---s~aTIRN~M~~Le~lGlve~~p~------~s~GriPT~~a 69 (78)
T PF03444_consen 21 GEPVGSKTIAEELGR---SPATIRNEMADLEELGLVESQPH------PSGGRIPTDKA 69 (78)
T ss_pred CCCcCHHHHHHHHCC---ChHHHHHHHHHHHHCCCccCCCC------CCCCCCcCHHH
Confidence 479999999999999 56889999999999999985321 03566666543
No 369
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=86.49 E-value=2.1 Score=37.27 Aligned_cols=95 Identities=13% Similarity=0.181 Sum_probs=68.0
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeeccc-----ccccCCCCCCceEeeCCCCCCC------CCccEEEEc
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDLPH-----VVPKVPDTDNLKFIAGDMFQSI------PPADAFFFK 259 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~-----~~~~a~~~~~v~~~~~d~~~~~------p~~D~i~~~ 259 (359)
+.+..+||-+|+++|.....+...- |.--+++++.+. .+..|++..+|..+.-|...+. +-.|+|++
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDvIFa- 232 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFA- 232 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEEEec-
Confidence 4678999999999999888877653 666788888732 4556677788888888885543 23677765
Q ss_pred chhccCC-chHHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 260 AIFHAFV-DEDCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 260 ~vl~~~~-~~~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
+.+ .++.+.+.-++...|++ ||.++|.-
T Consensus 233 ----Dvaqpdq~RivaLNA~~FLk~---gGhfvisi 261 (317)
T KOG1596|consen 233 ----DVAQPDQARIVALNAQYFLKN---GGHFVISI 261 (317)
T ss_pred ----cCCCchhhhhhhhhhhhhhcc---CCeEEEEE
Confidence 222 33445566778889999 88888754
No 370
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=86.11 E-value=0.52 Score=44.37 Aligned_cols=87 Identities=18% Similarity=0.237 Sum_probs=54.5
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCCC-------CCCceEeeCCCCC-C-CCC--ccEEEEcch
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVPD-------TDNLKFIAGDMFQ-S-IPP--ADAFFFKAI 261 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~-~p~--~D~i~~~~v 261 (359)
+...|||||.|||.++...++...+ ++++++. ..|.+.|+. .++|+++..-..+ . .|. +|+++.-.+
T Consensus 66 gkv~vLdigtGTGLLSmMAvragaD-~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~f 144 (636)
T KOG1501|consen 66 GKVFVLDIGTGTGLLSMMAVRAGAD-SVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVREDF 144 (636)
T ss_pred ceEEEEEccCCccHHHHHHHHhcCC-eEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhhh
Confidence 4567999999999999999888744 6999998 447666652 5677776655433 1 222 666654333
Q ss_pred hccCCchHHHHHHHHHHHhc
Q 018205 262 FHAFVDEDCLKILKRCREAI 281 (359)
Q Consensus 262 l~~~~~~~~~~~L~~~~~~L 281 (359)
.-.+--+-+..-++++++.|
T Consensus 145 dtEligeGalps~qhAh~~L 164 (636)
T KOG1501|consen 145 DTELIGEGALPSLQHAHDML 164 (636)
T ss_pred hhhhhccccchhHHHHHHHh
Confidence 32222222334556666555
No 371
>PF05732 RepL: Firmicute plasmid replication protein (RepL); InterPro: IPR008813 This entry consists of proteins thought to be involved in plasmid replication. ; GO: 0006260 DNA replication, 0006276 plasmid maintenance
Probab=86.01 E-value=0.99 Score=37.22 Aligned_cols=44 Identities=14% Similarity=0.198 Sum_probs=39.3
Q ss_pred CCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccc
Q 018205 50 PITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLT 104 (359)
Q Consensus 50 ~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~ 104 (359)
-+|..+||+.+|+ +.+.+.|.++.|...++|.+.. .|.|.++|.
T Consensus 75 ~~t~~~ia~~l~i---S~~Tv~r~ik~L~e~~iI~k~~--------~G~Y~iNP~ 118 (165)
T PF05732_consen 75 VATQKEIAEKLGI---SKPTVSRAIKELEEKNIIKKIR--------NGAYMINPN 118 (165)
T ss_pred EeeHHHHHHHhCC---CHHHHHHHHHHHHhCCcEEEcc--------CCeEEECcH
Confidence 4589999999999 6799999999999999999875 589999985
No 372
>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A ....
Probab=85.98 E-value=1.2 Score=31.08 Aligned_cols=36 Identities=14% Similarity=0.367 Sum_probs=33.0
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
-+.|-++||+.+|+ ....+.+.|+.|...|+++..+
T Consensus 27 ~~lt~~~iA~~~g~---sr~tv~r~l~~l~~~g~I~~~~ 62 (76)
T PF13545_consen 27 LPLTQEEIADMLGV---SRETVSRILKRLKDEGIIEVKR 62 (76)
T ss_dssp EESSHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEET
T ss_pred ecCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEcC
Confidence 48999999999999 6789999999999999999774
No 373
>PRK10870 transcriptional repressor MprA; Provisional
Probab=85.96 E-value=0.98 Score=37.71 Aligned_cols=65 Identities=15% Similarity=0.164 Sum_probs=45.6
Q ss_pred CcchhcccC-CCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCcc-ceEeccccccccc
Q 018205 39 DIPEVIHKH-GRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEE-EAYALTLTSKLFL 109 (359)
Q Consensus 39 glf~~L~~~-~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~-~~~~~t~~~~~l~ 109 (359)
.++..|... +++.|..+||+.+++ +...+.++++-|+..|++++.... .|.. -..++|+.++.+.
T Consensus 59 ~iL~~L~~~~~~~it~~eLa~~l~l---~~~tvsr~v~rLe~kGlV~R~~~~---~DrR~~~v~LT~~G~~~~ 125 (176)
T PRK10870 59 MALITLESQENHSIQPSELSCALGS---SRTNATRIADELEKRGWIERRESD---NDRRCLHLQLTEKGHEFL 125 (176)
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecCCC---CCCCeeEEEECHHHHHHH
Confidence 344444432 357899999999999 679999999999999999987421 1111 1366777766544
No 374
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=85.60 E-value=1.3 Score=40.09 Aligned_cols=106 Identities=14% Similarity=0.143 Sum_probs=70.1
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCC-CCeEEEeeccc-ccccCC------CCCCceEeeCCCCCC----CC-CccEEEE
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFP-GIKCTVLDLPH-VVPKVP------DTDNLKFIAGDMFQS----IP-PADAFFF 258 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~-~~~~a~------~~~~v~~~~~d~~~~----~p-~~D~i~~ 258 (359)
..+..+|||..++.|.=+..+++..+ ...+++.|++. -+...+ ....+.....|.... .+ .||.|++
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 34578899999999999999999887 56899999943 333222 245667776776332 22 3898884
Q ss_pred ----cc--hhccCCc-------hH-------HHHHHHHHHHhc----ccCCCCcEEEEEeeecCCC
Q 018205 259 ----KA--IFHAFVD-------ED-------CLKILKRCREAI----ASRGDRGKVIIIDIVINEK 300 (359)
Q Consensus 259 ----~~--vl~~~~~-------~~-------~~~~L~~~~~~L----~p~~~gG~lli~~~~~~~~ 300 (359)
+. ++..-++ ++ -.++|+++.+.+ +| ||.++.........
T Consensus 163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~---gG~lvYsTCS~~~e 225 (283)
T PF01189_consen 163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKP---GGRLVYSTCSLSPE 225 (283)
T ss_dssp ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEE---EEEEEEEESHHHGG
T ss_pred CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccC---CCeEEEEeccHHHH
Confidence 22 1221111 11 137899999999 99 88888877665443
No 375
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=85.30 E-value=0.87 Score=40.34 Aligned_cols=195 Identities=11% Similarity=0.100 Sum_probs=106.5
Q ss_pred CHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccccccccCCCCChhhHHhhhcC-----c
Q 018205 52 TLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFLKDKPYCLSPVVLTLTD-----Q 126 (359)
Q Consensus 52 t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~~l~~~~~~~~~~~~~~~~~-----~ 126 (359)
++-.|++...+ +.+.+..+++.|...|++.... +...+|..+..++..- .+.....+-|. .
T Consensus 36 d~wkIvd~s~~---plp~v~~i~~~l~~egiv~~~~---------g~v~~TekG~E~~e~~--gi~~~~~~~C~~CeGrg 101 (354)
T COG1568 36 DFWKIVDYSDL---PLPLVASILEILEDEGIVKIEE---------GGVELTEKGEELAEEL--GIKKKYDYTCECCEGRG 101 (354)
T ss_pred chHhhhhhccC---CchHHHHHHHHHHhcCcEEEec---------CcEeehhhhHHHHHHh--CCCccccccccCcCCcc
Confidence 88889999988 6899999999999999999884 6688998887666421 22211111111 0
Q ss_pred ccccchhhhhHhhhcCCCchhhhhcCCCChhhhcccCccHHHHHHHHHhhcc-cch-HHHHHhcccccCCCCeEEEeCCC
Q 018205 127 VFVNPCHFLSRWFRDNELSAYETANDGTVFWDYMAKNPDFNSIYNQAMASDS-QLA-NLIVKDCQPIFQGLGSLVDVGGG 204 (359)
Q Consensus 127 ~~~~~~~~L~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~-~~~-~~~~~~~~~~~~~~~~vlDvG~G 204 (359)
.....+..|-+.+ -++....|+-...|++....-. ... -.++..-. --.++.|+-+| -
T Consensus 102 i~l~~f~dll~kf-----------------~eiaK~RP~p~~~yDQgfvTpEttv~Rv~lm~~RG--DL~gK~I~vvG-D 161 (354)
T COG1568 102 ISLQAFKDLLEKF-----------------REIAKDRPEPLHQYDQGFVTPETTVSRVALMYSRG--DLEGKEIFVVG-D 161 (354)
T ss_pred ccchhHHHHHHHH-----------------HHHHhcCCCcchhcccccccccceeeeeeeecccc--CcCCCeEEEEc-C
Confidence 0011112222221 1222222222222222211100 000 01111111 12357899999 4
Q ss_pred cchHHHHHHHHCCCCeEEEeeccc-ccccCC------CCCCceEeeCCCCCCCC-----CccEEEEcchhccCCchHHHH
Q 018205 205 TGSFARIISEAFPGIKCTVLDLPH-VVPKVP------DTDNLKFIAGDMFQSIP-----PADAFFFKAIFHAFVDEDCLK 272 (359)
Q Consensus 205 ~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~------~~~~v~~~~~d~~~~~p-----~~D~i~~~~vl~~~~~~~~~~ 272 (359)
.-.++++++-..---++.++|+.+ .+.... ..++++.+..|..+++| .||+++.--. + +-+....
T Consensus 162 DDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiTDPp-e--Ti~alk~ 238 (354)
T COG1568 162 DDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFITDPP-E--TIKALKL 238 (354)
T ss_pred chhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHHhhCCeeecCch-h--hHHHHHH
Confidence 445555554432222799999965 554333 25779999999988888 3999875211 0 0122345
Q ss_pred HHHHHHHhccc
Q 018205 273 ILKRCREAIAS 283 (359)
Q Consensus 273 ~L~~~~~~L~p 283 (359)
+|.+=...|+.
T Consensus 239 FlgRGI~tLkg 249 (354)
T COG1568 239 FLGRGIATLKG 249 (354)
T ss_pred HHhccHHHhcC
Confidence 66666778875
No 376
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=84.86 E-value=5.7 Score=37.55 Aligned_cols=100 Identities=16% Similarity=0.163 Sum_probs=61.8
Q ss_pred cCCCCeEEEeCCCc-chHHHHHHHHCCCCeEEEeecc-cccccCCCCCCceEee---CC-CCC---C-CC--CccEEEEc
Q 018205 192 FQGLGSLVDVGGGT-GSFARIISEAFPGIKCTVLDLP-HVVPKVPDTDNLKFIA---GD-MFQ---S-IP--PADAFFFK 259 (359)
Q Consensus 192 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~v~~~~---~d-~~~---~-~p--~~D~i~~~ 259 (359)
..+..+||.+|||. |..+..+++...-.+++++|.+ +..+.+++.....++. .+ +.+ . .+ .+|+|+-+
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~ 261 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDA 261 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEEC
Confidence 45568999999988 8899999998754368898874 3555544321222222 11 111 1 11 47887753
Q ss_pred c---------------hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 260 A---------------IFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 260 ~---------------vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
- +|+..++. ...++++.+.|++ +|++++....
T Consensus 262 vg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~---~G~iv~~g~~ 308 (386)
T cd08283 262 VGMEAHGSPLHKAEQALLKLETDR--PDALREAIQAVRK---GGTVSIIGVY 308 (386)
T ss_pred CCCcccccccccccccccccccCc--hHHHHHHHHHhcc---CCEEEEEcCC
Confidence 2 12222333 3478899999999 8999887643
No 377
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=84.85 E-value=0.85 Score=37.60 Aligned_cols=48 Identities=17% Similarity=0.249 Sum_probs=41.6
Q ss_pred HHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceee
Q 018205 34 CAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFST 85 (359)
Q Consensus 34 ~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~ 85 (359)
...+..|+..|.+ ++.+|..+||+++|+ .+..+.+=++.|...|+++.
T Consensus 13 D~~D~~IL~~Lq~-d~R~s~~eiA~~lgl---S~~tv~~Ri~rL~~~GvI~~ 60 (164)
T PRK11169 13 DRIDRNILNELQK-DGRISNVELSKRVGL---SPTPCLERVRRLERQGFIQG 60 (164)
T ss_pred HHHHHHHHHHhcc-CCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEE
Confidence 3467788889987 489999999999999 57888999999999999974
No 378
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=84.60 E-value=5.2 Score=36.00 Aligned_cols=125 Identities=14% Similarity=0.156 Sum_probs=70.2
Q ss_pred eEEEeCCCcchHHHHHHHHCCCC-eEEEeeccc-ccccCCCCCCceEeeCCCCC----C-CCCccEEEEcchhccCC---
Q 018205 197 SLVDVGGGTGSFARIISEAFPGI-KCTVLDLPH-VVPKVPDTDNLKFIAGDMFQ----S-IPPADAFFFKAIFHAFV--- 266 (359)
Q Consensus 197 ~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~~~-~~~~a~~~~~v~~~~~d~~~----~-~p~~D~i~~~~vl~~~~--- 266 (359)
+++|+-||.|.+...+.+.. . .+.++|+.. .++..+..-.-....+|+.+ . .+.+|+++.+.-...++
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G--~~~v~a~e~~~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~ag 79 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG--FEIVAANEIDKSAAETYEANFPNKLIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIAG 79 (275)
T ss_pred cEEEEccCcchHHHHHHHcC--CEEEEEEeCCHHHHHHHHHhCCCCCccCccccCchhhcCCCCCEEEeCCCChhhhHHh
Confidence 68999999999999888763 4 467789844 55443321111256677744 1 34689999654322221
Q ss_pred -----chHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCc
Q 018205 267 -----DEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFS 341 (359)
Q Consensus 267 -----~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~ 341 (359)
++....++.++.++++.. .-.++++|.+..-... . .....+.|.+.|++.||.
T Consensus 80 ~~~~~~d~r~~L~~~~~~~i~~~--~P~~~v~ENV~g~~~~------------------~--~~~~~~~i~~~l~~~GY~ 137 (275)
T cd00315 80 KRKGFEDTRGTLFFEIIRILKEK--KPKYFLLENVKGLLTH------------------D--NGNTLKVILNTLEELGYN 137 (275)
T ss_pred hcCCCCCchHHHHHHHHHHHHhc--CCCEEEEEcCcchhcc------------------C--chHHHHHHHHHHHhCCcE
Confidence 112223444444443321 1257887866432110 0 112456788888899988
Q ss_pred eeEE
Q 018205 342 HFKI 345 (359)
Q Consensus 342 ~~~~ 345 (359)
+...
T Consensus 138 ~~~~ 141 (275)
T cd00315 138 VYWK 141 (275)
T ss_pred EEEE
Confidence 6443
No 379
>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed
Probab=84.51 E-value=1.3 Score=42.44 Aligned_cols=46 Identities=15% Similarity=0.276 Sum_probs=39.2
Q ss_pred CCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccc
Q 018205 48 GRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLT 104 (359)
Q Consensus 48 ~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~ 104 (359)
|.|.|.++|++++++ +.+.++++|+.|.+.|++.+.+ ++.|.+.+.
T Consensus 308 g~~~t~~~La~~l~~---~~~~v~~iL~~L~~agLI~~~~--------~g~~~l~rd 353 (412)
T PRK04214 308 GKALDVDEIRRLEPM---GYDELGELLCELARIGLLRRGE--------RGQWVLARD 353 (412)
T ss_pred CCCCCHHHHHHHhCC---CHHHHHHHHHHHHhCCCeEecC--------CCceEecCC
Confidence 479999999999999 6899999999999999998654 466876653
No 380
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=84.39 E-value=1.4 Score=41.52 Aligned_cols=61 Identities=10% Similarity=0.151 Sum_probs=52.0
Q ss_pred CCCceEeeCCCCC---CCC--CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 018205 236 TDNLKFIAGDMFQ---SIP--PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINE 299 (359)
Q Consensus 236 ~~~v~~~~~d~~~---~~p--~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~ 299 (359)
.++|+++++++.+ ..| .+|.+++...+..+++++..+.++++.+.++| ||+|+.-....+.
T Consensus 274 ~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~p---gaRV~~Rsa~~~~ 339 (380)
T PF11899_consen 274 LDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARP---GARVLWRSAAVPP 339 (380)
T ss_pred CCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCC---CCEEEEeeCCCCC
Confidence 5899999999854 233 49999999999999999999999999999999 9999997765543
No 381
>TIGR00498 lexA SOS regulatory protein LexA. LexA acts as a homodimer to repress a number of genes involved in the response to DNA damage (SOS response), including itself and RecA. RecA, in the presence of single-stranded DNA, acts as a co-protease to activate a latent autolytic protease activity (EC 3.4.21.88) of LexA, where the active site Ser is part of LexA. The autolytic cleavage site is an Ala-Gly bond in LexA (at position 84-85 in E. coli LexA; this sequence is replaced by Gly-Gly in Synechocystis). The cleavage leads to derepression of the SOS regulon and eventually to DNA repair. LexA in Bacillus subtilis is called DinR. LexA is much less broadly distributed than RecA.
Probab=84.26 E-value=1.2 Score=37.88 Aligned_cols=37 Identities=11% Similarity=0.287 Sum_probs=32.8
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
-+.|+.|||+.+|++ ....+.+.|+.|...|+++...
T Consensus 24 ~~~~~~ela~~~~~~--s~~tv~~~l~~L~~~g~i~~~~ 60 (199)
T TIGR00498 24 YPPSIREIARAVGLR--SPSAAEEHLKALERKGYIERDP 60 (199)
T ss_pred CCCcHHHHHHHhCCC--ChHHHHHHHHHHHHCCCEecCC
Confidence 478999999999993 2789999999999999999883
No 382
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=83.97 E-value=3.5 Score=36.40 Aligned_cols=84 Identities=14% Similarity=0.186 Sum_probs=65.3
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCCCCCceEeeCCCCCCCC---CccEEEEcchhccCCch
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPDTDNLKFIAGDMFQSIP---PADAFFFKAIFHAFVDE 268 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~p---~~D~i~~~~vl~~~~~~ 268 (359)
+.+.+.-+|+|+-.|.++-.|.++ ++.++.+|-..|.+..-...+|+.+..|-|.-.| ..|-.+|-.| +
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr--~m~V~aVDng~ma~sL~dtg~v~h~r~DGfk~~P~r~~idWmVCDmV------E 280 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKR--NMRVYAVDNGPMAQSLMDTGQVTHLREDGFKFRPTRSNIDWMVCDMV------E 280 (358)
T ss_pred hcCCceeeecccCCCccchhhhhc--ceEEEEeccchhhhhhhcccceeeeeccCcccccCCCCCceEEeehh------c
Confidence 457899999999999999999988 8899999987666666667889999999877444 3888887655 2
Q ss_pred HHHHHHHHHHHhccc
Q 018205 269 DCLKILKRCREAIAS 283 (359)
Q Consensus 269 ~~~~~L~~~~~~L~p 283 (359)
+..++-+.+.++|..
T Consensus 281 kP~rv~~li~~Wl~n 295 (358)
T COG2933 281 KPARVAALIAKWLVN 295 (358)
T ss_pred CcHHHHHHHHHHHHc
Confidence 224466667777875
No 383
>COG1497 Predicted transcriptional regulator [Transcription]
Probab=83.66 E-value=0.66 Score=40.08 Aligned_cols=61 Identities=15% Similarity=0.234 Sum_probs=47.8
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccccccccCCCCChhhHH
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFLKDKPYCLSPVV 120 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~~l~~~~~~~~~~~~ 120 (359)
+...-.|||+++|++ ...+...++-|+..|++++.+ .++|..|+.+..++.+.-+.++.+.
T Consensus 24 p~v~q~eIA~~lgiT---~QaVsehiK~Lv~eG~i~~~g--------R~~Y~iTkkG~e~l~~~~~dlr~f~ 84 (260)
T COG1497 24 PRVKQKEIAKKLGIT---LQAVSEHIKELVKEGLIEKEG--------RGEYEITKKGAEWLLEQLSDLRRFS 84 (260)
T ss_pred CCCCHHHHHHHcCCC---HHHHHHHHHHHHhccceeecC--------CeeEEEehhHHHHHHHHHHHHHHHH
Confidence 578999999999994 688999999999999999975 6899999988654444322344333
No 384
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=83.48 E-value=1.6 Score=40.48 Aligned_cols=44 Identities=27% Similarity=0.594 Sum_probs=35.1
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH 228 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~ 228 (359)
.++..+. .+.+...|+|+|.|.|.++..+.-.| +++|.++|-+.
T Consensus 143 elvSsi~-~f~gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq 186 (476)
T KOG2651|consen 143 ELVSSIS-DFTGIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQ 186 (476)
T ss_pred HHHHHHH-hhcCCCeeEEcCCCchHHHHHHhhcc-CceEEEeccch
Confidence 3444443 25678899999999999999988777 88999999976
No 385
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=83.45 E-value=0.97 Score=36.76 Aligned_cols=47 Identities=9% Similarity=0.213 Sum_probs=40.4
Q ss_pred HhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeee
Q 018205 36 VELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTA 86 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~ 86 (359)
.+..|.+.|.. ++..|..+||+++|+ .+..+.+=++.|.+.|++..-
T Consensus 10 ~D~~Il~~Lq~-d~R~s~~eiA~~lgl---S~~tV~~Ri~rL~~~GvI~~~ 56 (153)
T PRK11179 10 LDRGILEALME-NARTPYAELAKQFGV---SPGTIHVRVEKMKQAGIITGT 56 (153)
T ss_pred HHHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeeeE
Confidence 56678888877 489999999999999 578888899999999999743
No 386
>TIGR01889 Staph_reg_Sar staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam model pfam01047.
Probab=83.44 E-value=1.5 Score=33.36 Aligned_cols=36 Identities=25% Similarity=0.519 Sum_probs=33.6
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
+++|..+|++.+++ +...+.+.++.|+..|++.+..
T Consensus 42 ~~~t~~eL~~~l~~---~~stvs~~i~~Le~kg~I~r~~ 77 (109)
T TIGR01889 42 GKLTLKEIIKEILI---KQSALVKIIKKLSKKGYLSKER 77 (109)
T ss_pred CcCcHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeccC
Confidence 68999999999999 6899999999999999999764
No 387
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=83.34 E-value=4 Score=31.91 Aligned_cols=82 Identities=13% Similarity=0.237 Sum_probs=50.2
Q ss_pred CceEeeCCCCC---CC-CCccEEEEcchh-----ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHH
Q 018205 238 NLKFIAGDMFQ---SI-PPADAFFFKAIF-----HAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTE 308 (359)
Q Consensus 238 ~v~~~~~d~~~---~~-p~~D~i~~~~vl-----~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~ 308 (359)
.+++..+|+.+ .+ ..+|+|++-..- ..|+ ..++++++++++| ||.+....
T Consensus 32 ~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs----~e~~~~l~~~~~~---~~~l~Tys-------------- 90 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWS----EELFKKLARLSKP---GGTLATYS-------------- 90 (124)
T ss_dssp EEEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSS----HHHHHHHHHHEEE---EEEEEES---------------
T ss_pred EEEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCC----HHHHHHHHHHhCC---CcEEEEee--------------
Confidence 45666677633 12 247877764321 2343 3499999999999 66554411
Q ss_pred HHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCceeEEEEeCCceeEEEEe
Q 018205 309 AKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPVYGIKSLIEVY 358 (359)
Q Consensus 309 ~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~~~~~~~~~~vi~~~ 358 (359)
+...+++.|.++||.+.+....++-..++.+.
T Consensus 91 ------------------~a~~Vr~~L~~aGF~v~~~~g~g~Kr~~~~a~ 122 (124)
T PF05430_consen 91 ------------------SAGAVRRALQQAGFEVEKVPGFGRKREMLRAV 122 (124)
T ss_dssp -------------------BHHHHHHHHHCTEEEEEEE-STTSSEEEEEE
T ss_pred ------------------chHHHHHHHHHcCCEEEEcCCCCCcchheEEE
Confidence 12337788999999998888777766666554
No 388
>PF07789 DUF1627: Protein of unknown function (DUF1627); InterPro: IPR012432 This is a group of sequences found in hypothetical proteins predicted to be expressed in a number of bacterial species. The region in question is approximately 150 amino acid residues long.
Probab=83.26 E-value=2.1 Score=34.07 Aligned_cols=36 Identities=14% Similarity=0.201 Sum_probs=33.3
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
|++|.+|||-+.|+ ..+.+.--|.++++.|-|.+..
T Consensus 5 Ga~T~eELA~~FGv---ttRkvaStLa~~ta~Grl~Rv~ 40 (155)
T PF07789_consen 5 GAKTAEELAGKFGV---TTRKVASTLAMVTATGRLIRVN 40 (155)
T ss_pred CcccHHHHHHHhCc---chhhhHHHHHHHHhcceeEEec
Confidence 89999999999999 5788899999999999999875
No 389
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=83.12 E-value=1.3 Score=37.82 Aligned_cols=44 Identities=20% Similarity=0.341 Sum_probs=36.0
Q ss_pred cchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeee
Q 018205 40 IPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTA 86 (359)
Q Consensus 40 lf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~ 86 (359)
|.+++...+.+.|.+|+|+++|+ ..-..+|.|.+|++.|+++.+
T Consensus 163 i~~~~~~~~~~~Taeela~~~gi---SRvTaRRYLeyl~~~~~l~a~ 206 (224)
T COG4565 163 VREALKEPDQELTAEELAQALGI---SRVTARRYLEYLVSNGILEAE 206 (224)
T ss_pred HHHHHhCcCCccCHHHHHHHhCc---cHHHHHHHHHHHHhcCeeeEE
Confidence 34445433369999999999999 578899999999999999865
No 390
>PF02002 TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024550 The general transcription factor TFIIE has an essential role in eukaryotic transcription initiation, together with RNA polymerase II and other general factors. Human TFIIE consists of two subunits, TFIIE-alpha and TFIIE-beta, and joins the preinitiation complex after RNA polymerase II and TFIIF []. This entry represents a helix-turn-helix (HTH) domain found in eukaryotic TFIIE-alpha []. It is also found in proteins from archaebacteria that are presumed to be TFIIE-alpha subunits [], the transcriptional regulator SarR, and also DNA-directed RNA polymerase III subunit Rpc3.; PDB: 1VD4_A 1Q1H_A.
Probab=82.87 E-value=0.71 Score=34.86 Aligned_cols=44 Identities=20% Similarity=0.285 Sum_probs=32.7
Q ss_pred cchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 40 IPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 40 lf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
|++.|... +.++-++||+.+|+ +..-++++|..|...|++....
T Consensus 18 Il~~L~~~-~~l~de~la~~~~l---~~~~vRkiL~~L~~~~lv~~~~ 61 (105)
T PF02002_consen 18 ILDALLRK-GELTDEDLAKKLGL---KPKEVRKILYKLYEDGLVSYRR 61 (105)
T ss_dssp HHHHHHHH---B-HHHHHHTT-S----HHHHHHHHHHHHHHSS-EEEE
T ss_pred HHHHHHHc-CCcCHHHHHHHhCC---CHHHHHHHHHHHHHCCCeEEEE
Confidence 56777653 68999999999999 6899999999999999997653
No 391
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=82.64 E-value=2.9 Score=28.25 Aligned_cols=37 Identities=14% Similarity=0.230 Sum_probs=31.7
Q ss_pred CCCC-CHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 48 GRPI-TLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 48 ~~~~-t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
|..+ |..+||+.+|+ +...+++.|+.|.+.|+++...
T Consensus 21 g~~lps~~~la~~~~v---sr~tvr~al~~L~~~g~i~~~~ 58 (64)
T PF00392_consen 21 GDRLPSERELAERYGV---SRTTVREALRRLEAEGLIERRP 58 (64)
T ss_dssp TSBE--HHHHHHHHTS----HHHHHHHHHHHHHTTSEEEET
T ss_pred CCEeCCHHHHHHHhcc---CCcHHHHHHHHHHHCCcEEEEC
Confidence 3577 99999999999 6789999999999999998875
No 392
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=82.55 E-value=1.5 Score=38.96 Aligned_cols=45 Identities=13% Similarity=0.164 Sum_probs=39.0
Q ss_pred CcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 39 DIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 39 glf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
.|.+.|.+. +.++++|||+.+|+ .+..++|-|+.|.+.|++.+..
T Consensus 9 ~Il~~l~~~-~~~~~~ela~~l~v---S~~TirRdL~~Le~~g~i~r~~ 53 (251)
T PRK13509 9 ILLELLAQL-GFVTVEKVIERLGI---SPATARRDINKLDESGKLKKVR 53 (251)
T ss_pred HHHHHHHHc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEec
Confidence 356677663 79999999999999 6789999999999999998875
No 393
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=82.55 E-value=8.4 Score=32.42 Aligned_cols=103 Identities=17% Similarity=0.228 Sum_probs=71.9
Q ss_pred CCCeEEEeCCCcchHHHHHHHH----CCCCeEEEeeccc-c-cccCCCCCCceEeeCCCCCC-C--C------C-ccEEE
Q 018205 194 GLGSLVDVGGGTGSFARIISEA----FPGIKCTVLDLPH-V-VPKVPDTDNLKFIAGDMFQS-I--P------P-ADAFF 257 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~----~p~~~~~~~D~~~-~-~~~a~~~~~v~~~~~d~~~~-~--p------~-~D~i~ 257 (359)
++..|+++|.-.|.-+..++.. ....+++++|++- . -..|.+.++|.|+.++-.++ + + . --+.+
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~~~~y~kIfv 148 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRLKNEYPKIFV 148 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHHHhcCCCcEEE
Confidence 4689999999998866665543 2347899999854 3 34455688999999998653 1 0 1 24556
Q ss_pred EcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCC
Q 018205 258 FKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKK 301 (359)
Q Consensus 258 ~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~ 301 (359)
|-..-|+. +.+.+.|+-...+|.- |..+++.|.+.++-.
T Consensus 149 ilDsdHs~--~hvLAel~~~~pllsa---G~Y~vVeDs~v~dlp 187 (237)
T COG3510 149 ILDSDHSM--EHVLAELKLLAPLLSA---GDYLVVEDSNVNDLP 187 (237)
T ss_pred EecCCchH--HHHHHHHHHhhhHhhc---CceEEEecccccCCC
Confidence 66666655 4556678888888887 788888887776654
No 394
>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function.
Probab=82.45 E-value=1.3 Score=32.59 Aligned_cols=47 Identities=17% Similarity=0.273 Sum_probs=40.2
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
.+.|+..|... +|-.+.-||..+++ +...+...|+.|+.+|+|++..
T Consensus 9 ~~~IL~hl~~~-~~Dy~k~ia~~l~~---~~~~v~~~l~~Le~~GLler~~ 55 (92)
T PF10007_consen 9 DLKILQHLKKA-GPDYAKSIARRLKI---PLEEVREALEKLEEMGLLERVE 55 (92)
T ss_pred HHHHHHHHHHH-CCCcHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEEec
Confidence 44566667664 68899999999999 7899999999999999999985
No 395
>PF05584 Sulfolobus_pRN: Sulfolobus plasmid regulatory protein; InterPro: IPR008848 This family consists of several plasmid regulatory proteins from the extreme thermophilic and acidophilic archaea Sulfolobus.
Probab=82.30 E-value=1.9 Score=29.94 Aligned_cols=42 Identities=24% Similarity=0.304 Sum_probs=36.3
Q ss_pred cchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeee
Q 018205 40 IPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTA 86 (359)
Q Consensus 40 lf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~ 86 (359)
|...++. +..|.+||-+.+|+ +...+...|..|...|++++.
T Consensus 10 IL~~ls~--~c~TLeeL~ekTgi---~k~~LlV~LsrL~k~GiI~Rk 51 (72)
T PF05584_consen 10 ILIILSK--RCCTLEELEEKTGI---SKNTLLVYLSRLAKRGIIERK 51 (72)
T ss_pred HHHHHHh--ccCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeeee
Confidence 4445555 58999999999999 788999999999999999876
No 396
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=82.28 E-value=2.4 Score=40.74 Aligned_cols=129 Identities=21% Similarity=0.284 Sum_probs=81.0
Q ss_pred ccHHHHHHHHHhhcccch-HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCCC------
Q 018205 164 PDFNSIYNQAMASDSQLA-NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVPD------ 235 (359)
Q Consensus 164 ~~~~~~~~~~m~~~~~~~-~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------ 235 (359)
++..-.|+..|.+...+. ...-.. ......+|-||-|.|.+...+...+|..+++++++ |++++.|+.
T Consensus 268 ~~l~s~~h~~m~~g~aL~~n~~~~~----~~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q 343 (482)
T KOG2352|consen 268 PELASQYHQMMIGGLALIMNRPPQK----LDTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQ 343 (482)
T ss_pred cccCcchhhhhhccceeccccCchh----ccccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhh
Confidence 445555666666655433 211122 23456788888888999999999999999999999 779999883
Q ss_pred CCCceEeeCCCCC----------CCCCccEEEE----cchhccCC--c--hHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 018205 236 TDNLKFIAGDMFQ----------SIPPADAFFF----KAIFHAFV--D--EDCLKILKRCREAIASRGDRGKVIIIDIVI 297 (359)
Q Consensus 236 ~~~v~~~~~d~~~----------~~p~~D~i~~----~~vl~~~~--~--~~~~~~L~~~~~~L~p~~~gG~lli~~~~~ 297 (359)
.+|..+.-.|-.+ ....||+++. .. -|-.. . --...+|..++.+|+| .|.++|.-...
T Consensus 344 ~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl~~dvds~d-~~g~~~pp~~fva~~~l~~~k~~l~p---~g~f~inlv~r 419 (482)
T KOG2352|consen 344 SDRNKVHIADGLDFLQRTAKSQQEDICPDVLMVDVDSKD-SHGMQCPPPAFVAQVALQPVKMILPP---RGMFIINLVTR 419 (482)
T ss_pred hhhhhhhHhhchHHHHHHhhccccccCCcEEEEECCCCC-cccCcCCchHHHHHHHHHHHhhccCc---cceEEEEEecC
Confidence 2334444333321 1224888774 22 22221 1 1245789999999999 67765554444
Q ss_pred CCC
Q 018205 298 NEK 300 (359)
Q Consensus 298 ~~~ 300 (359)
+..
T Consensus 420 ~~~ 422 (482)
T KOG2352|consen 420 NSS 422 (482)
T ss_pred Ccc
Confidence 433
No 397
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=82.23 E-value=1.7 Score=34.66 Aligned_cols=104 Identities=20% Similarity=0.276 Sum_probs=62.2
Q ss_pred eEEEeec-ccccccCCC-------CCCceEeeCCCC---CCCC--CccEEEEcchhccCC---------chHHHHHHHHH
Q 018205 220 KCTVLDL-PHVVPKVPD-------TDNLKFIAGDMF---QSIP--PADAFFFKAIFHAFV---------DEDCLKILKRC 277 (359)
Q Consensus 220 ~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~---~~~p--~~D~i~~~~vl~~~~---------~~~~~~~L~~~ 277 (359)
+|+++|+ ++.++..++ .++++++..+=. +.++ .+|+++++.- ++| .+...+.|+++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLG--YLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLG--YLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEES--B-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECC--cCCCCCCCCCcCcHHHHHHHHHH
Confidence 5889999 447776652 457888877542 2234 3888887533 233 22345789999
Q ss_pred HHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCceeEEEEe
Q 018205 278 REAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 278 ~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~~~~~ 348 (359)
.+.|+| ||.+.|+-+...+.+.. +.. ...+|.+-|....|.+.+...+
T Consensus 79 l~lL~~---gG~i~iv~Y~GH~gG~e----E~~----------------av~~~~~~L~~~~~~V~~~~~~ 126 (140)
T PF06962_consen 79 LELLKP---GGIITIVVYPGHPGGKE----ESE----------------AVEEFLASLDQKEFNVLKYQFI 126 (140)
T ss_dssp HHHEEE---EEEEEEEE--STCHHHH----HHH----------------HHHHHHHTS-TTTEEEEEEEES
T ss_pred HHhhcc---CCEEEEEEeCCCCCCHH----HHH----------------HHHHHHHhCCcceEEEEEEEcc
Confidence 999999 89888888776665321 111 2344555556667777777666
No 398
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=82.08 E-value=2.3 Score=37.88 Aligned_cols=56 Identities=16% Similarity=0.299 Sum_probs=40.0
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHC-----CCCeEEEeecccccccCC----CC---CCceEeeCCCC
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAF-----PGIKCTVLDLPHVVPKVP----DT---DNLKFIAGDMF 247 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~-----p~~~~~~~D~~~~~~~a~----~~---~~v~~~~~d~~ 247 (359)
+.+...++|+|||.|.++..+++.. +...++.+|....-..+. .. ..++-+..|+.
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~D~~~~~~~~~~~~~R~riDI~ 83 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKADNKIRKDESEPKFERLRIDIK 83 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccchhhhhccCCCCceEEEEEEee
Confidence 4567899999999999999999988 567899999843211221 11 35666666763
No 399
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=81.97 E-value=3.6 Score=36.34 Aligned_cols=97 Identities=20% Similarity=0.291 Sum_probs=50.7
Q ss_pred CCCeEEEeCCCcchHHHHH---HHHC--CCCeEEEeec----ccc-cc-cCC-------------------------C--
Q 018205 194 GLGSLVDVGGGTGSFARII---SEAF--PGIKCTVLDL----PHV-VP-KVP-------------------------D-- 235 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l---~~~~--p~~~~~~~D~----~~~-~~-~a~-------------------------~-- 235 (359)
-+..|+|+||=.|..+..+ ++.+ ++.+++++|. |+. .+ ... .
T Consensus 74 vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g 153 (248)
T PF05711_consen 74 VPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG 153 (248)
T ss_dssp S-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred CCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence 3589999999999866544 3333 4568999997 331 11 000 0
Q ss_pred --CCCceEeeCCCCCCCCC--ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 236 --TDNLKFIAGDMFQSIPP--ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 236 --~~~v~~~~~d~~~~~p~--~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
.+++.++.|.|.+.+|. .+-|-+-++=.++= +.....|..++..|.| ||.|++-|
T Consensus 154 l~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlY-esT~~aLe~lyprl~~---GGiIi~DD 212 (248)
T PF05711_consen 154 LLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLY-ESTKDALEFLYPRLSP---GGIIIFDD 212 (248)
T ss_dssp TSSTTEEEEES-HHHHCCC-TT--EEEEEE---SH-HHHHHHHHHHGGGEEE---EEEEEESS
T ss_pred CCcccEEEECCcchhhhccCCCccEEEEEEeccch-HHHHHHHHHHHhhcCC---CeEEEEeC
Confidence 35889999998554442 12222222211222 2345689999999999 56555533
No 400
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=81.68 E-value=1.8 Score=38.62 Aligned_cols=37 Identities=11% Similarity=0.063 Sum_probs=27.8
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-cc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VV 230 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~ 230 (359)
-..++|||+|||+|.-.+....+. ..++...|.+. ++
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~-~~~~~fqD~na~vl 152 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKG-AVSVHFQDFNAEVL 152 (282)
T ss_pred ecCceeEecCCcccccchhhhhhc-cceeeeEecchhhe
Confidence 356899999999999888877664 25677777743 55
No 401
>COG1522 Lrp Transcriptional regulators [Transcription]
Probab=81.54 E-value=1.3 Score=35.84 Aligned_cols=48 Identities=10% Similarity=0.262 Sum_probs=40.7
Q ss_pred HhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 36 VELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
.+..|...|.+ +++.|..+||+++|+ ++..+.+-++-|...|++..-.
T Consensus 9 ~D~~IL~~L~~-d~r~~~~eia~~lgl---S~~~v~~Ri~~L~~~GiI~~~~ 56 (154)
T COG1522 9 IDRRILRLLQE-DARISNAELAERVGL---SPSTVLRRIKRLEEEGVIKGYT 56 (154)
T ss_pred HHHHHHHHHHH-hCCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCceeeEE
Confidence 45667788877 478999999999999 5788899999999999998653
No 402
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=81.21 E-value=2 Score=33.10 Aligned_cols=36 Identities=17% Similarity=0.211 Sum_probs=33.0
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
.+.|++|||+.+.+ ..+.++.+|+.|.+.|.|+...
T Consensus 18 ~~vtl~elA~~l~c---S~Rn~r~lLkkm~~~gWi~W~p 53 (115)
T PF12793_consen 18 VEVTLDELAELLFC---SRRNARTLLKKMQEEGWITWQP 53 (115)
T ss_pred cceeHHHHHHHhCC---CHHHHHHHHHHHHHCCCeeeeC
Confidence 57899999999999 5789999999999999999874
No 403
>PRK05638 threonine synthase; Validated
Probab=81.13 E-value=1.4 Score=42.62 Aligned_cols=60 Identities=18% Similarity=0.279 Sum_probs=43.3
Q ss_pred cchhcccCCCCCCHHHHHHhcC--CCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccccccc
Q 018205 40 IPEVIHKHGRPITLPQLVSALE--INPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLF 108 (359)
Q Consensus 40 lf~~L~~~~~~~t~~ela~~~~--~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~~l 108 (359)
|+..|.+ ++++.-||++.++ + ....+.+.|+.|...|+++.... ....-.|++|+.++.+
T Consensus 376 IL~~L~~--~~~~~~el~~~l~~~~---s~~~v~~hL~~Le~~GLV~~~~~----~g~~~~Y~Lt~~g~~~ 437 (442)
T PRK05638 376 ILKILSE--REMYGYEIWKALGKPL---KYQAVYQHIKELEELGLIEEAYR----KGRRVYYKLTEKGRRL 437 (442)
T ss_pred HHHHHhh--CCccHHHHHHHHcccC---CcchHHHHHHHHHHCCCEEEeec----CCCcEEEEECcHHHHH
Confidence 4444554 6899999999998 6 57899999999999999975310 0012348888876543
No 404
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=80.22 E-value=4.9 Score=37.30 Aligned_cols=62 Identities=16% Similarity=0.372 Sum_probs=41.0
Q ss_pred cCccHHHHHHHHHhhcccchHHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHC----C----CCeEEEeeccc
Q 018205 162 KNPDFNSIYNQAMASDSQLANLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAF----P----GIKCTVLDLPH 228 (359)
Q Consensus 162 ~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~----p----~~~~~~~D~~~ 228 (359)
..|+..+.|.+.+..+-. .+.+.+. .+.+..+|++|+|+|.++..+++.. | .+++..++++.
T Consensus 50 TApels~lFGella~~~~---~~wq~~g--~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~ 119 (370)
T COG1565 50 TAPELSQLFGELLAEQFL---QLWQELG--RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSP 119 (370)
T ss_pred echhHHHHHHHHHHHHHH---HHHHHhc--CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCH
Confidence 346676777665553221 2233333 3456789999999999887776543 4 56899999865
No 405
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=79.73 E-value=7.3 Score=36.39 Aligned_cols=93 Identities=18% Similarity=0.235 Sum_probs=64.7
Q ss_pred CeEEEeCCCc-chHHHHHHHHCCCCeEEEeecc-cccccCCCCCCceEeeCCCC--------C-CC-CCccEEEEcchhc
Q 018205 196 GSLVDVGGGT-GSFARIISEAFPGIKCTVLDLP-HVVPKVPDTDNLKFIAGDMF--------Q-SI-PPADAFFFKAIFH 263 (359)
Q Consensus 196 ~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~v~~~~~d~~--------~-~~-p~~D~i~~~~vl~ 263 (359)
.+|+=+|||. |.++..+++.+.-.+++++|.+ .-++.|++........-.-. + .- .++|+++=.--
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G-- 247 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG-- 247 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC--
Confidence 4999999997 8888888998887899999994 47777764222222211110 1 11 24898885333
Q ss_pred cCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 018205 264 AFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINE 299 (359)
Q Consensus 264 ~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~ 299 (359)
....+..+.++++| +|.+.++......
T Consensus 248 ------~~~~~~~ai~~~r~---gG~v~~vGv~~~~ 274 (350)
T COG1063 248 ------SPPALDQALEALRP---GGTVVVVGVYGGE 274 (350)
T ss_pred ------CHHHHHHHHHHhcC---CCEEEEEeccCCc
Confidence 13378899999999 9999998887665
No 406
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=79.71 E-value=1.4 Score=43.29 Aligned_cols=65 Identities=20% Similarity=0.358 Sum_probs=50.1
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccccccccC
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFLKD 111 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~~l~~~ 111 (359)
+..++..|... ++.|..+||+.+++ +...+.+.++.|.+.|+++..... ...+.+|+.++.+..+
T Consensus 8 e~~vL~~L~~~-~~~s~~eLA~~l~l---~~~tVt~~i~~Le~kGlV~~~~~~------~~~i~LTeeG~~~~~~ 72 (489)
T PRK04172 8 EKKVLKALKEL-KEATLEELAEKLGL---PPEAVMRAAEWLEEKGLVKVEERV------EEVYVLTEEGKKYAEE 72 (489)
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHhCc---CHHHHHHHHHHHHhCCCEEEEeee------EEEEEECHHHHHHHHh
Confidence 33445555543 68999999999999 679999999999999999976411 2568999998866554
No 407
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process
Probab=79.40 E-value=7.1 Score=28.90 Aligned_cols=86 Identities=15% Similarity=0.224 Sum_probs=50.3
Q ss_pred cchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCC-------cccCHHHH
Q 018205 259 KAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRG-------SERTEKEW 331 (359)
Q Consensus 259 ~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-------~~~t~~~~ 331 (359)
..+|-|++.++..++|.++....+ +.+++.= .+... + ...+....-+ +.+ .....+++
T Consensus 2 mDvLIHYp~~d~~~~l~~La~~t~-----~~~ifTf--AP~T~----~--L~~m~~iG~l--FP~~dRsp~i~~~~e~~l 66 (97)
T PF07109_consen 2 MDVLIHYPAEDAAQMLAHLASRTR-----GSLIFTF--APRTP----L--LALMHAIGKL--FPRPDRSPRIYPHREEDL 66 (97)
T ss_pred cceEeccCHHHHHHHHHHHHHhcc-----CcEEEEE--CCCCH----H--HHHHHHHhcc--CCCCCCCCcEEEeCHHHH
Confidence 345667888999999999988765 4555521 11111 0 0011111000 111 13468999
Q ss_pred HHHHHHcCCceeEEEEeC-Cc--eeEEEEeC
Q 018205 332 EKLFLDAGFSHFKITPVY-GI--KSLIEVYP 359 (359)
Q Consensus 332 ~~ll~~aGf~~~~~~~~~-~~--~~vi~~~~ 359 (359)
.+.++++||++.+...+. ++ .-++|++|
T Consensus 67 ~~~l~~~g~~~~r~~ris~gFY~S~llE~~r 97 (97)
T PF07109_consen 67 RRALAAAGWRIGRTERISSGFYISQLLEAVR 97 (97)
T ss_pred HHHHHhCCCeeeecccccCcChHHHHhhccC
Confidence 999999999998887773 22 23555543
No 408
>PF12324 HTH_15: Helix-turn-helix domain of alkylmercury lyase; InterPro: IPR024259 Alkylmercury lyase (EC:4.99.1.2) cleaves the carbon-mercury bond of organomercurials such as phenylmercuric acetate. This entry represents the N-terminal helix-turn-helix domain.; PDB: 3FN8_B 3F2G_B 3F0P_A 3F2F_B 3F2H_A 3F0O_B 1S6L_A.
Probab=79.13 E-value=1.4 Score=30.96 Aligned_cols=34 Identities=24% Similarity=0.436 Sum_probs=22.3
Q ss_pred cchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHH
Q 018205 40 IPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLL 77 (359)
Q Consensus 40 lf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L 77 (359)
++..|+. |.|+|+++||.++|+ ..+.+...|..+
T Consensus 29 LLr~LA~-G~PVt~~~LA~a~g~---~~e~v~~~L~~~ 62 (77)
T PF12324_consen 29 LLRLLAK-GQPVTVEQLAAALGW---PVEEVRAALAAM 62 (77)
T ss_dssp HHHHHTT-TS-B-HHHHHHHHT-----HHHHHHHHHH-
T ss_pred HHHHHHc-CCCcCHHHHHHHHCC---CHHHHHHHHHhC
Confidence 6677887 689999999999999 555555555544
No 409
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=78.84 E-value=1.8 Score=38.45 Aligned_cols=45 Identities=11% Similarity=0.177 Sum_probs=39.0
Q ss_pred CcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 39 DIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 39 glf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
.|.+.|.+. +.+++.|||+.+++ .+..++|-|..|...|++.+..
T Consensus 9 ~Il~~l~~~-~~~~~~ela~~l~v---S~~TiRRdL~~Le~~g~l~r~~ 53 (252)
T PRK10906 9 AIIELVKQQ-GYVSTEELVEHFSV---SPQTIRRDLNDLAEQNKILRHH 53 (252)
T ss_pred HHHHHHHHc-CCEeHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEec
Confidence 456677663 68999999999999 6899999999999999998875
No 410
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=78.39 E-value=4.1 Score=38.95 Aligned_cols=102 Identities=14% Similarity=0.104 Sum_probs=60.0
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCC--CeEEEeeccc-ccccCCC------CCCceEeeC-CCCC---CCC---CccEEE
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPG--IKCTVLDLPH-VVPKVPD------TDNLKFIAG-DMFQ---SIP---PADAFF 257 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~--~~~~~~D~~~-~~~~a~~------~~~v~~~~~-d~~~---~~p---~~D~i~ 257 (359)
.+..+.|+|.|.|.-...+....+. -.++.||.+. |...... ...--++.. .++. +.+ +||+|+
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi 279 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVI 279 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEE
Confidence 3567888888877644444444433 3688999865 6554441 111112222 2322 222 399999
Q ss_pred EcchhccCCchH-HHHHHHH-HHHhcccCCCCcEEEEEeeecC
Q 018205 258 FKAIFHAFVDED-CLKILKR-CREAIASRGDRGKVIIIDIVIN 298 (359)
Q Consensus 258 ~~~vl~~~~~~~-~~~~L~~-~~~~L~p~~~gG~lli~~~~~~ 298 (359)
+.+++|++.... ...+.++ +++..++ |+.+++++....
T Consensus 280 ~ah~l~~~~s~~~R~~v~~s~~r~~~r~---g~~lViIe~g~~ 319 (491)
T KOG2539|consen 280 CAHKLHELGSKFSRLDVPESLWRKTDRS---GYFLVIIEKGTT 319 (491)
T ss_pred eeeeeeccCCchhhhhhhHHHHHhccCC---CceEEEEecCCc
Confidence 999999987443 2233344 4455666 889999886543
No 411
>TIGR02147 Fsuc_second hypothetical protein, TIGR02147. This family consists of the 40 members of a paralogous protein family in the rumen anaerobe Fibrobacter succinogenes S85. Member proteins are about 270 residues long and appear to lack signal sequences and transmembrane helices. The only perfectly conserved residue is a glycine in an otherwise poorly conserved region, suggesting members are not enzymes. The family is not characterized.
Probab=78.36 E-value=3 Score=37.37 Aligned_cols=46 Identities=17% Similarity=0.144 Sum_probs=39.0
Q ss_pred CCCCHHHHHHhcC--CCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccc
Q 018205 49 RPITLPQLVSALE--INPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTS 105 (359)
Q Consensus 49 ~~~t~~ela~~~~--~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~ 105 (359)
+..++++||++++ + ...-++.-|+.|+..|++++++ +|.|..|..+
T Consensus 136 ~~~~~~~ia~~l~p~i---s~~ev~~sL~~L~~~glikk~~--------~g~y~~t~~~ 183 (271)
T TIGR02147 136 FADDPEELAKRCFPKI---SAEQVKESLDLLERLGLIKKNE--------DGFYKQTDKA 183 (271)
T ss_pred CCCCHHHHHHHhCCCC---CHHHHHHHHHHHHHCCCeeECC--------CCcEEeecce
Confidence 3447899999999 5 5677899999999999999986 6889988764
No 412
>PF04182 B-block_TFIIIC: B-block binding subunit of TFIIIC; InterPro: IPR007309 Yeast transcription factor IIIC (TFIIIC) is a multisubunit protein complex that interacts with two control elements of class III promoters called the A and B blocks. This family represents the subunit within TFIIIC involved in B-block binding []. Although defined as a yeast protein, it is also found in a number of other organisms.
Probab=78.27 E-value=1.8 Score=30.44 Aligned_cols=47 Identities=21% Similarity=0.282 Sum_probs=38.1
Q ss_pred cCcchhcccCC-CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 38 LDIPEVIHKHG-RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 38 lglf~~L~~~~-~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
..+++.++... .+.+..+|++.+|. |.+.+...++.|...|++.+..
T Consensus 5 ~~~Le~I~rsR~~Gi~q~~L~~~~~~---D~r~i~~~~k~L~~~gLI~k~~ 52 (75)
T PF04182_consen 5 YCLLERIARSRYNGITQSDLSKLLGI---DPRSIFYRLKKLEKKGLIVKQS 52 (75)
T ss_pred HHHHHHHHhcCCCCEehhHHHHHhCC---CchHHHHHHHHHHHCCCEEEEE
Confidence 34455555432 58899999999998 7899999999999999999874
No 413
>PRK13777 transcriptional regulator Hpr; Provisional
Probab=77.98 E-value=2.3 Score=35.72 Aligned_cols=62 Identities=11% Similarity=0.194 Sum_probs=45.0
Q ss_pred CcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccc---eEeccccccccc
Q 018205 39 DIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEE---AYALTLTSKLFL 109 (359)
Q Consensus 39 glf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~---~~~~t~~~~~l~ 109 (359)
.++..|... +++|..+||+.+++ +...+.++++-|+..|++.+.... . +. ...+|+.++.+.
T Consensus 49 ~iL~~L~~~-~~itq~eLa~~l~l---~~sTvtr~l~rLE~kGlI~R~~~~---~--DrR~~~I~LTekG~~l~ 113 (185)
T PRK13777 49 HILWIAYHL-KGASISEIAKFGVM---HVSTAFNFSKKLEERGYLTFSKKE---D--DKRNTYIELTEKGEELL 113 (185)
T ss_pred HHHHHHHhC-CCcCHHHHHHHHCC---CHhhHHHHHHHHHHCCCEEecCCC---C--CCCeeEEEECHHHHHHH
Confidence 445555543 68999999999999 678899999999999999976411 1 22 256676665443
No 414
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=77.55 E-value=2 Score=41.54 Aligned_cols=67 Identities=10% Similarity=0.216 Sum_probs=52.5
Q ss_pred HHhcCcchhcccCCCC-CCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccccccccC
Q 018205 35 AVELDIPEVIHKHGRP-ITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFLKD 111 (359)
Q Consensus 35 a~~lglf~~L~~~~~~-~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~~l~~~ 111 (359)
+.+..|+..|... ++ .+.++||+.+|+ +...+.+.+..|.+.|+++..... ...|.+|..++..+++
T Consensus 3 ~~e~~iL~~l~~~-~~~~~~~~la~~~g~---~~~~v~~~~~~L~~kg~v~~~~~~------~~~~~LT~eG~~~l~~ 70 (492)
T PLN02853 3 MAEEALLGALSNN-EEISDSGQFAASHGL---DHNEVVGVIKSLHGFRYVDAQDIK------RETWVLTEEGKKYAAE 70 (492)
T ss_pred hHHHHHHHHHHhc-CCCCCHHHHHHHcCC---CHHHHHHHHHHHHhCCCEEEEEEE------EEEEEECHHHHHHHHc
Confidence 4556677777653 44 799999999999 678899999999999999866432 4789999999855544
No 415
>PF07381 DUF1495: Winged helix DNA-binding domain (DUF1495); InterPro: IPR010863 This family consists of several hypothetical archaeal proteins of around 110 residues in length. The function of this family is unknown, although one sequence (Q8U3W1 from SWISSPROT) is described as a putative HTH transcription regulator.
Probab=77.51 E-value=4 Score=29.82 Aligned_cols=67 Identities=15% Similarity=0.168 Sum_probs=44.3
Q ss_pred HHHhcCcchhcccC-CCCCCHHHHHHhcCCCCCCcccHHHHH----------HHHHccCce-eeecccccccCccceEec
Q 018205 34 CAVELDIPEVIHKH-GRPITLPQLVSALEINPTKADGLFKLM----------RLLVHTGFF-STANVQSAQQQEEEAYAL 101 (359)
Q Consensus 34 ~a~~lglf~~L~~~-~~~~t~~ela~~~~~~~~~~~~l~~~L----------~~L~~~gll-~~~~~~~~~~~~~~~~~~ 101 (359)
.=++..|+..|... ..+.++.|||+.++++ ...+..-| +.|+.+|++ ++... .+...|++
T Consensus 8 S~~R~~vl~~L~~~yp~~~~~~eIar~v~~~---~snV~GaL~G~g~rY~~e~SLv~lGLV~~~~~~-----~g~k~Y~l 79 (90)
T PF07381_consen 8 SKVRKKVLEYLCSIYPEPAYPSEIARSVGSD---YSNVLGALRGDGKRYNKEDSLVGLGLVEEEEEK-----GGFKYYRL 79 (90)
T ss_pred HHHHHHHHHHHHHcCCCcCCHHHHHHHHCCC---HHHHHHHHhcCCCCcCcchhHHHcCCeeEeeec-----CCeeEEEe
Confidence 44566677777664 4689999999999995 34444444 468899999 33321 01236888
Q ss_pred ccccccc
Q 018205 102 TLTSKLF 108 (359)
Q Consensus 102 t~~~~~l 108 (359)
|+.+..+
T Consensus 80 T~~G~~~ 86 (90)
T PF07381_consen 80 TEKGKRI 86 (90)
T ss_pred ChhhhhH
Confidence 8876543
No 416
>COG1510 Predicted transcriptional regulators [Transcription]
Probab=76.63 E-value=2.4 Score=34.76 Aligned_cols=37 Identities=16% Similarity=0.246 Sum_probs=33.3
Q ss_pred CCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 48 GRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 48 ~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
..|+|++||++++|+ ....+.--++.|...|++.+.-
T Consensus 39 ~~Pmtl~Ei~E~lg~---Sks~vS~~lkkL~~~~lV~~~~ 75 (177)
T COG1510 39 RKPLTLDEIAEALGM---SKSNVSMGLKKLQDWNLVKKVF 75 (177)
T ss_pred CCCccHHHHHHHHCC---CcchHHHHHHHHHhcchHHhhh
Confidence 379999999999999 6788999999999999998763
No 417
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=76.53 E-value=1.2 Score=28.29 Aligned_cols=40 Identities=8% Similarity=0.305 Sum_probs=22.5
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCc
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGF 82 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gl 82 (359)
+..+...+.+ +.|..+||+.+|+ +...+.+|++...+.|+
T Consensus 7 R~~ii~l~~~---G~s~~~ia~~lgv---s~~Tv~~w~kr~~~~G~ 46 (50)
T PF13384_consen 7 RAQIIRLLRE---GWSIREIAKRLGV---SRSTVYRWIKRYREEGL 46 (50)
T ss_dssp ---HHHHHHH---T--HHHHHHHHTS----HHHHHHHHT-------
T ss_pred HHHHHHHHHC---CCCHHHHHHHHCc---CHHHHHHHHHHcccccc
Confidence 3444445554 8999999999999 68999999988766663
No 418
>PTZ00357 methyltransferase; Provisional
Probab=76.43 E-value=18 Score=36.67 Aligned_cols=129 Identities=11% Similarity=0.098 Sum_probs=75.4
Q ss_pred CChhhhcccCccHHHHHHHHHhhccc-chH------------HH------HHhccccc--CCCCeEEEeCCCcchHHHHH
Q 018205 154 TVFWDYMAKNPDFNSIYNQAMASDSQ-LAN------------LI------VKDCQPIF--QGLGSLVDVGGGTGSFARII 212 (359)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~m~~~~~-~~~------------~~------~~~~~~~~--~~~~~vlDvG~G~G~~~~~l 212 (359)
...|+.+++|+-..+.|.+++...-. +.. .+ +++.+..- .....|+-||+|-|-+....
T Consensus 639 S~TYEVFEKDpVKYdqYE~AI~kAL~Dw~~~~~~~~~~~~ns~~~~k~~~mdrvp~~~~d~~~vVImVVGAGRGPLVdra 718 (1072)
T PTZ00357 639 SGVYEVFERDARKYRQYREAVFHYVRDWYAAGAEQQHAHQNSEFFAKHGVMQRVPVPSPDERTLHLVLLGCGRGPLIDEC 718 (1072)
T ss_pred hhhHHHHcCCcHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccCCCceEEEEEEcCCccHHHHHH
Confidence 45688889999877888877654321 000 00 01111000 11246899999999888777
Q ss_pred HHHCC----CCeEEEeec-cccc---ccC--C--C--------CCCceEeeCCCCC-CCC-------------CccEEEE
Q 018205 213 SEAFP----GIKCTVLDL-PHVV---PKV--P--D--------TDNLKFIAGDMFQ-SIP-------------PADAFFF 258 (359)
Q Consensus 213 ~~~~p----~~~~~~~D~-~~~~---~~a--~--~--------~~~v~~~~~d~~~-~~p-------------~~D~i~~ 258 (359)
.+... .+++++++= |..+ ... . . .++|+++..|+.. ..+ .+|++|+
T Consensus 719 LrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~s~~~P~~~gKaDIVVS 798 (1072)
T PTZ00357 719 LHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENGSLTLPADFGLCDLIVS 798 (1072)
T ss_pred HHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccccccccccccccceehH
Confidence 66543 357788876 3411 111 1 1 3469999999955 111 4898885
Q ss_pred cchhccCCch-HHHHHHHHHHHhccc
Q 018205 259 KAIFHAFVDE-DCLKILKRCREAIAS 283 (359)
Q Consensus 259 ~~vl~~~~~~-~~~~~L~~~~~~L~p 283 (359)
..|--|.|. -..+.|.-+.+.||+
T Consensus 799 -ELLGSFGDNELSPECLDGaQrfLKd 823 (1072)
T PTZ00357 799 -ELLGSLGDNELSPECLEAFHAQLED 823 (1072)
T ss_pred -hhhcccccccCCHHHHHHHHHhhhh
Confidence 334444433 346678888877763
No 419
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=76.18 E-value=3.5 Score=36.32 Aligned_cols=44 Identities=16% Similarity=0.267 Sum_probs=37.7
Q ss_pred cchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 40 IPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 40 lf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
|.+.|.+. +..+++|||+.+|+ .+..++|-|+.|...|.+.+..
T Consensus 9 Il~~l~~~-~~~~~~eLa~~l~V---S~~TiRRdL~~L~~~~~l~r~~ 52 (240)
T PRK10411 9 IVDLLLNH-TSLTTEALAEQLNV---SKETIRRDLNELQTQGKILRNH 52 (240)
T ss_pred HHHHHHHc-CCCcHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEec
Confidence 55666653 79999999999999 6899999999999999998764
No 420
>COG5631 Predicted transcription regulator, contains HTH domain (MarR family) [Transcription]
Probab=76.02 E-value=8.1 Score=31.25 Aligned_cols=77 Identities=17% Similarity=0.317 Sum_probs=55.6
Q ss_pred HHhHHHHHHHHHHHhcCc-------chhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc
Q 018205 23 IYNYVSSTSLKCAVELDI-------PEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE 95 (359)
Q Consensus 23 ~~g~~~~~~l~~a~~lgl-------f~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~ 95 (359)
.++-|...++.++.+.++ +..+...+.|+++.+|+..++.. |......-||.|...|+++..+.. .
T Consensus 64 Af~rW~vrCmAaag~~~ls~~e~l~lH~irhrdR~K~laDic~~ln~e--Dth~itYslrKL~k~gLit~t~~g-----k 136 (199)
T COG5631 64 AFGRWQVRCMAAAGEFSLSGPENLLLHIIRHRDRPKSLADICQMLNRE--DTHNITYSLRKLLKGGLITRTGSG-----K 136 (199)
T ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCchhhHHHHHHHhccc--cchhHHHHHHHHHhccceecCCCC-----c
Confidence 445666667777655443 22233335799999999999998 678888899999999999987531 1
Q ss_pred cceEecccccc
Q 018205 96 EEAYALTLTSK 106 (359)
Q Consensus 96 ~~~~~~t~~~~ 106 (359)
+-.|..|+.+.
T Consensus 137 evTy~vTa~G~ 147 (199)
T COG5631 137 EVTYEVTALGH 147 (199)
T ss_pred eEEEEEecchH
Confidence 34688888764
No 421
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=75.49 E-value=2.9 Score=37.50 Aligned_cols=46 Identities=11% Similarity=0.146 Sum_probs=39.6
Q ss_pred cCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 38 LDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
..|.+.|.+. +.+++.|||+.+++ ...-++|=|..|.+.|++.+..
T Consensus 20 ~~Il~~L~~~-~~vtv~eLa~~l~V---S~~TIRRDL~~Le~~G~l~r~~ 65 (269)
T PRK09802 20 EQIIQRLRQQ-GSVQVNDLSALYGV---STVTIRNDLAFLEKQGIAVRAY 65 (269)
T ss_pred HHHHHHHHHc-CCEeHHHHHHHHCC---CHHHHHHHHHHHHhCCCeEEEe
Confidence 4466777764 68999999999999 6799999999999999999875
No 422
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=75.45 E-value=7.9 Score=34.91 Aligned_cols=84 Identities=18% Similarity=0.103 Sum_probs=53.1
Q ss_pred CCeEEEeCCCc--chHHHHHHHHCCCCeEEEeeccc-ccccCCCCCCceEeeCCC-CCCCCCccEEEEcchhccCCchHH
Q 018205 195 LGSLVDVGGGT--GSFARIISEAFPGIKCTVLDLPH-VVPKVPDTDNLKFIAGDM-FQSIPPADAFFFKAIFHAFVDEDC 270 (359)
Q Consensus 195 ~~~vlDvG~G~--G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~~v~~~~~d~-~~~~p~~D~i~~~~vl~~~~~~~~ 270 (359)
..+|+=+|.|- |.++..+.++.+...+++.|.+. .++.+...+-+.-...+. ......+|+|+.+-=. ...
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi-----~~~ 77 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPI-----EAT 77 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccH-----HHH
Confidence 35777788774 66777777777777788888854 555544222111111222 2344568999875433 455
Q ss_pred HHHHHHHHHhccc
Q 018205 271 LKILKRCREAIAS 283 (359)
Q Consensus 271 ~~~L~~~~~~L~p 283 (359)
..+++++...|++
T Consensus 78 ~~~l~~l~~~l~~ 90 (279)
T COG0287 78 EEVLKELAPHLKK 90 (279)
T ss_pred HHHHHHhcccCCC
Confidence 6789999888888
No 423
>PF13518 HTH_28: Helix-turn-helix domain
Probab=75.32 E-value=2.3 Score=27.06 Aligned_cols=29 Identities=7% Similarity=0.289 Sum_probs=26.0
Q ss_pred CCHHHHHHhcCCCCCCcccHHHHHHHHHccCc
Q 018205 51 ITLPQLVSALEINPTKADGLFKLMRLLVHTGF 82 (359)
Q Consensus 51 ~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gl 82 (359)
.|+.++|+.+|+ +...+.+|++.....|+
T Consensus 13 ~s~~~~a~~~gi---s~~tv~~w~~~y~~~G~ 41 (52)
T PF13518_consen 13 ESVREIAREFGI---SRSTVYRWIKRYREGGI 41 (52)
T ss_pred CCHHHHHHHHCC---CHhHHHHHHHHHHhcCH
Confidence 499999999999 67899999999988775
No 424
>PRK11886 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor; Provisional
Probab=75.30 E-value=3.4 Score=38.10 Aligned_cols=55 Identities=18% Similarity=0.243 Sum_probs=42.1
Q ss_pred CcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCc-eeeecccccccCccceEeccccc
Q 018205 39 DIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGF-FSTANVQSAQQQEEEAYALTLTS 105 (359)
Q Consensus 39 glf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gl-l~~~~~~~~~~~~~~~~~~t~~~ 105 (359)
.|.+.|.+ +.+.+.++||+++|+ ....+.+.++.|.+.|+ +.... +..|++.+..
T Consensus 8 ~il~~L~~-~~~~s~~~LA~~lgv---sr~tV~~~l~~L~~~G~~i~~~~--------~~Gy~L~~~~ 63 (319)
T PRK11886 8 QLLSLLAD-GDFHSGEQLGEELGI---SRAAIWKHIQTLEEWGLDIFSVK--------GKGYRLAEPL 63 (319)
T ss_pred HHHHHHHc-CCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCceEEec--------CCeEEecCcc
Confidence 45566665 368899999999999 68999999999999999 54443 3468765543
No 425
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=75.04 E-value=2.1 Score=32.02 Aligned_cols=47 Identities=11% Similarity=0.260 Sum_probs=36.5
Q ss_pred hcCcchhccc---CCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeee
Q 018205 37 ELDIPEVIHK---HGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTA 86 (359)
Q Consensus 37 ~lglf~~L~~---~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~ 86 (359)
.-.|++.|.. .+.++++++|++.+++ +..-++..++.|...|++-..
T Consensus 49 ~~~Vl~~i~~~~~~~~Gv~v~~I~~~l~~---~~~~v~~al~~L~~eG~IYsT 98 (102)
T PF08784_consen 49 QDKVLNFIKQQPNSEEGVHVDEIAQQLGM---SENEVRKALDFLSNEGHIYST 98 (102)
T ss_dssp HHHHHHHHHC----TTTEEHHHHHHHSTS----HHHHHHHHHHHHHTTSEEES
T ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHhCc---CHHHHHHHHHHHHhCCeEecc
Confidence 4445555544 1368999999999999 789999999999999998654
No 426
>PRK09775 putative DNA-binding transcriptional regulator; Provisional
Probab=74.98 E-value=3.4 Score=39.91 Aligned_cols=41 Identities=15% Similarity=0.281 Sum_probs=34.9
Q ss_pred cchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 40 IPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 40 lf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
|...|.+ +|.|+.||++.+|+ .+..+.+.|+.| .|+|...+
T Consensus 5 ~~~~L~~--g~~~~~eL~~~l~~---sq~~~s~~L~~L--~~~V~~~~ 45 (442)
T PRK09775 5 LTTLLLQ--GPLSAAELAARLGV---SQATLSRLLAAL--GDQVVRFG 45 (442)
T ss_pred HHHHHhc--CCCCHHHHHHHhCC---CHHHHHHHHHHh--hcceeEec
Confidence 3455665 89999999999999 789999999999 88887765
No 427
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=74.94 E-value=2.9 Score=40.64 Aligned_cols=67 Identities=16% Similarity=0.246 Sum_probs=51.2
Q ss_pred HhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccccccccC
Q 018205 36 VELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFLKD 111 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~~l~~~ 111 (359)
.+..|+..|...++..+.++||+.+|+ +...+.+.+..|.+.|+++..... ...|.+|..++..+.+
T Consensus 7 ~e~~iL~~l~~~~~~~~~~~la~~~~~---~~~~v~~~~~~L~~kg~v~~~~~~------~~~~~LT~eG~~~~~~ 73 (494)
T PTZ00326 7 EENTILSKLESENEIVNSLALAESLNI---DHQKVVGAIKSLESANYITTEMKK------SNTWTLTEEGEDYLKN 73 (494)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHcCC---CHHHHHHHHHHHHhCCCEEEEEEE------EEEEEECHHHHHHHHc
Confidence 344455666542257899999999999 678899999999999999866432 4789999999855544
No 428
>PRK12423 LexA repressor; Provisional
Probab=74.83 E-value=3.6 Score=35.14 Aligned_cols=37 Identities=16% Similarity=0.281 Sum_probs=31.8
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
-+.|..|||+.+|+. ....+++.|+.|+..|+|+...
T Consensus 24 ~~Ps~~eia~~~g~~--s~~~v~~~l~~L~~~G~l~~~~ 60 (202)
T PRK12423 24 QPPSLAEIAQAFGFA--SRSVARKHVQALAEAGLIEVVP 60 (202)
T ss_pred CCCCHHHHHHHhCCC--ChHHHHHHHHHHHHCCCEEecC
Confidence 367999999999963 4677899999999999999874
No 429
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=74.81 E-value=6.8 Score=35.27 Aligned_cols=79 Identities=13% Similarity=0.055 Sum_probs=46.5
Q ss_pred eEEEeCCCc--chHHHHHHHHCCCCeEEEeecc-cccccCCCCCCceEeeCCCCCCCCCccEEEEcchhccCCchHHHHH
Q 018205 197 SLVDVGGGT--GSFARIISEAFPGIKCTVLDLP-HVVPKVPDTDNLKFIAGDMFQSIPPADAFFFKAIFHAFVDEDCLKI 273 (359)
Q Consensus 197 ~vlDvG~G~--G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~v~~~~~d~~~~~p~~D~i~~~~vl~~~~~~~~~~~ 273 (359)
+|.=||+|. |.++..|+++ +.+++++|.. +.++.+.....+.....+. +....+|+|+.+- +.....++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~--g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~-~~~~~aDlVilav-----p~~~~~~~ 73 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL--GHTVYGVSRRESTCERAIERGLVDEASTDL-SLLKDCDLVILAL-----PIGLLLPP 73 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHCCCcccccCCH-hHhcCCCEEEEcC-----CHHHHHHH
Confidence 566788775 3455555554 5689999984 3555443222222111122 2234589988753 44555678
Q ss_pred HHHHHHhccc
Q 018205 274 LKRCREAIAS 283 (359)
Q Consensus 274 L~~~~~~L~p 283 (359)
++++...+++
T Consensus 74 ~~~l~~~l~~ 83 (279)
T PRK07417 74 SEQLIPALPP 83 (279)
T ss_pred HHHHHHhCCC
Confidence 8888888887
No 430
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=73.86 E-value=1.6 Score=27.30 Aligned_cols=23 Identities=0% Similarity=0.377 Sum_probs=16.4
Q ss_pred CCCHHHHHHhcCCCCCCcccHHHHHH
Q 018205 50 PITLPQLVSALEINPTKADGLFKLMR 75 (359)
Q Consensus 50 ~~t~~ela~~~~~~~~~~~~l~~~L~ 75 (359)
+.|+.+||+.+|+ ....+.|+|+
T Consensus 21 G~si~~IA~~~gv---sr~TvyR~l~ 43 (45)
T PF02796_consen 21 GMSIAEIAKQFGV---SRSTVYRYLN 43 (45)
T ss_dssp T--HHHHHHHTTS----HHHHHHHHC
T ss_pred CCCHHHHHHHHCc---CHHHHHHHHh
Confidence 4999999999999 5677777653
No 431
>TIGR01321 TrpR trp operon repressor, proteobacterial. This model represents TrpR, the repressor of the trp operon. It is found so far only in the gamma subdivision of the proteobacteria and in Chlamydia trachomatis. All members belong to species capable of tryptophan biosynthesis.
Probab=73.74 E-value=2.7 Score=30.93 Aligned_cols=42 Identities=10% Similarity=0.057 Sum_probs=34.3
Q ss_pred HHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHH
Q 018205 32 LKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLV 78 (359)
Q Consensus 32 l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~ 78 (359)
-..+.+.+|+..|.+ +++|-.|||+.+|+ ....+.|+=+.|.
T Consensus 39 ~~l~~R~~i~~~Ll~--~~~tQrEIa~~lGi---S~atIsR~sn~lk 80 (94)
T TIGR01321 39 EDLGDRIRIVNELLN--GNMSQREIASKLGV---SIATITRGSNNLK 80 (94)
T ss_pred HHHHHHHHHHHHHHh--CCCCHHHHHHHhCC---ChhhhhHHHhhcc
Confidence 356788999998876 79999999999999 5677777766654
No 432
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=73.72 E-value=2.9 Score=37.20 Aligned_cols=46 Identities=17% Similarity=0.233 Sum_probs=39.5
Q ss_pred cCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 38 LDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
..|.+.|.+. +.+++.|||+.+++ .+..++|=|+.|...|++.+..
T Consensus 8 ~~Il~~L~~~-~~v~v~eLa~~l~V---S~~TIRRDL~~Le~~g~l~r~~ 53 (256)
T PRK10434 8 AAILEYLQKQ-GKTSVEELAQYFDT---TGTTIRKDLVILEHAGTVIRTY 53 (256)
T ss_pred HHHHHHHHHc-CCEEHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEEE
Confidence 3456777764 78999999999999 6789999999999999998875
No 433
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=73.28 E-value=2 Score=33.22 Aligned_cols=54 Identities=15% Similarity=0.281 Sum_probs=40.6
Q ss_pred HHHhcCcchhcccCCCCCCHHHHHHhcCCC--CCCcccHHHHHHHHHccCceeeec
Q 018205 34 CAVELDIPEVIHKHGRPITLPQLVSALEIN--PTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 34 ~a~~lglf~~L~~~~~~~t~~ela~~~~~~--~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
+..+.-|++.|.+.+++.|++||.+.+.-. ..+...+.|-|+.|.+.|++.+..
T Consensus 7 T~~R~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~~~~ 62 (120)
T PF01475_consen 7 TPQRLAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIRKIE 62 (120)
T ss_dssp HHHHHHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEEEEE
Confidence 445566777887755799999999988531 114567999999999999999874
No 434
>PRK00215 LexA repressor; Validated
Probab=73.15 E-value=3.9 Score=34.92 Aligned_cols=38 Identities=18% Similarity=0.392 Sum_probs=33.0
Q ss_pred CCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 48 GRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 48 ~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
+.+.|..|||+.+|+. +...+.++|+.|+..|++++..
T Consensus 21 ~~~~s~~ela~~~~~~--~~~tv~~~l~~L~~~g~i~~~~ 58 (205)
T PRK00215 21 GYPPSRREIADALGLR--SPSAVHEHLKALERKGFIRRDP 58 (205)
T ss_pred CCCCCHHHHHHHhCCC--ChHHHHHHHHHHHHCCCEEeCC
Confidence 3588999999999993 2588999999999999998874
No 435
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=72.91 E-value=4.9 Score=35.00 Aligned_cols=45 Identities=13% Similarity=0.214 Sum_probs=38.3
Q ss_pred CcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeee
Q 018205 39 DIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTA 86 (359)
Q Consensus 39 glf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~ 86 (359)
.|++.|...++.++..+||+++|+ ....+++-++.|++.|+++..
T Consensus 187 ~IL~~L~~~egrlse~eLAerlGV---SRs~ireAlrkLE~aGvIe~r 231 (251)
T TIGR02787 187 HIFEELDGNEGLLVASKIADRVGI---TRSVIVNALRKLESAGVIESR 231 (251)
T ss_pred HHHHHhccccccccHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEec
Confidence 467777652379999999999999 567899999999999999877
No 436
>PF00376 MerR: MerR family regulatory protein; InterPro: IPR000551 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these is the MerR subfamily. MerR, which is found in many bacterial species mediates the mercuric-dependent induction of the mercury resistance operon. In the absence of mercury merR represses transcription by binding tightly, as a dimer, to the 'mer' operator region; when mercury is present the dimeric complex binds a single ion and becomes a potent transcriptional activator, while remaining bound to the mer site. Members of the family include the mercuric resistance operon regulatory protein merR; Bacillus subtilis bltR and bmrR; Bacillus glnR; Streptomyces coelicolor hspR; Bradyrhizobium japonicum nolA; Escherichia coli superoxide response regulator soxR; and Streptomyces lividans transcriptional activator tipA [, , , , , ]. Other members include hypothetical proteins from E. coli, B. subtilis and Haemophilus influenzae. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3HH0_A 2DG6_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q07_A 1Q06_A 1Q05_B ....
Probab=72.89 E-value=4.3 Score=24.30 Aligned_cols=26 Identities=15% Similarity=0.362 Sum_probs=20.1
Q ss_pred CHHHHHHhcCCCCCCcccHHHHHHHHHccCcee
Q 018205 52 TLPQLVSALEINPTKADGLFKLMRLLVHTGFFS 84 (359)
Q Consensus 52 t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~ 84 (359)
|+.|+|+.+|++ .+-||.....|+|.
T Consensus 1 ti~e~A~~~gvs-------~~tlR~ye~~Gll~ 26 (38)
T PF00376_consen 1 TIGEVAKLLGVS-------PRTLRYYEREGLLP 26 (38)
T ss_dssp EHHHHHHHHTS--------HHHHHHHHHTTSS-
T ss_pred CHHHHHHHHCCC-------HHHHHHHHHCCCCC
Confidence 578999999994 46677788899993
No 437
>PHA01634 hypothetical protein
Probab=72.86 E-value=5.6 Score=31.08 Aligned_cols=39 Identities=15% Similarity=-0.061 Sum_probs=29.9
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccC
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKV 233 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a 233 (359)
..++|+|||++.|..++.++.+. .-++++++..+ ..+..
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~G-AK~Vva~E~~~kl~k~~ 67 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRG-ASFVVQYEKEEKLRKKW 67 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcC-ccEEEEeccCHHHHHHH
Confidence 46899999999999999998874 22688888844 44433
No 438
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=72.82 E-value=3.6 Score=36.53 Aligned_cols=45 Identities=11% Similarity=0.245 Sum_probs=39.7
Q ss_pred CcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 39 DIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 39 glf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
.|.+.|.+. +.++++|||+.+++ .+..++|=|+.|+..|++.+..
T Consensus 9 ~Il~~l~~~-g~v~v~eLa~~~~V---S~~TIRRDL~~Le~~g~l~R~h 53 (253)
T COG1349 9 KILELLKEK-GKVSVEELAELFGV---SEMTIRRDLNELEEQGLLLRVH 53 (253)
T ss_pred HHHHHHHHc-CcEEHHHHHHHhCC---CHHHHHHhHHHHHHCCcEEEEe
Confidence 456777774 79999999999999 6799999999999999999985
No 439
>COG3413 Predicted DNA binding protein [General function prediction only]
Probab=71.58 E-value=6.3 Score=34.00 Aligned_cols=43 Identities=21% Similarity=0.240 Sum_probs=34.1
Q ss_pred HHHHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHH
Q 018205 28 SSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLL 77 (359)
Q Consensus 28 ~~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L 77 (359)
.-.+|+.|.++|-||.= ...+.++||+.+|++ ...+...||..
T Consensus 160 Q~~vL~~A~~~GYFd~P----R~~~l~dLA~~lGIS---kst~~ehLRrA 202 (215)
T COG3413 160 QLEVLRLAYKMGYFDYP----RRVSLKDLAKELGIS---KSTLSEHLRRA 202 (215)
T ss_pred HHHHHHHHHHcCCCCCC----ccCCHHHHHHHhCCC---HHHHHHHHHHH
Confidence 34689999999999875 478999999999995 55666666543
No 440
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=71.55 E-value=2.4 Score=37.71 Aligned_cols=70 Identities=11% Similarity=0.107 Sum_probs=43.1
Q ss_pred HHHHHHHHCCCCeEEEeeccc-ccccCCCCCCceEeeCCCCCCCCCccEEEEcchhccCCchHHHHHHHHHHHhccc
Q 018205 208 FARIISEAFPGIKCTVLDLPH-VVPKVPDTDNLKFIAGDMFQSIPPADAFFFKAIFHAFVDEDCLKILKRCREAIAS 283 (359)
Q Consensus 208 ~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~~v~~~~~d~~~~~p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p 283 (359)
++..|.++.++.++++.|.+. .++.|.+.+-+.-...+ .+.+..+|+|+++- |-.....+++++...+++
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~-~~~~~~~Dlvvlav-----P~~~~~~~l~~~~~~~~~ 71 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTD-IEAVEDADLVVLAV-----PVSAIEDVLEEIAPYLKP 71 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESH-HHHGGCCSEEEE-S------HHHHHHHHHHHHCGS-T
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCC-HhHhcCCCEEEEcC-----CHHHHHHHHHHhhhhcCC
Confidence 357788888889999999954 66666433333333332 12345689988754 335556788888877776
No 441
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=71.19 E-value=2.9 Score=25.74 Aligned_cols=27 Identities=11% Similarity=0.278 Sum_probs=19.6
Q ss_pred HhcCcchhcccCCCCCCHHHHHHhcCCC
Q 018205 36 VELDIPEVIHKHGRPITLPQLVSALEIN 63 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~ela~~~~~~ 63 (359)
++..|...|.. ++..|+.+||+.+|++
T Consensus 4 ~D~~Il~~Lq~-d~r~s~~~la~~lglS 30 (42)
T PF13404_consen 4 LDRKILRLLQE-DGRRSYAELAEELGLS 30 (42)
T ss_dssp HHHHHHHHHHH--TTS-HHHHHHHHTS-
T ss_pred HHHHHHHHHHH-cCCccHHHHHHHHCcC
Confidence 34556777776 4799999999999995
No 442
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=71.16 E-value=6.3 Score=32.63 Aligned_cols=54 Identities=15% Similarity=0.322 Sum_probs=41.9
Q ss_pred HHHhcCcchhcccCCCCCCHHHHHHhcCCC--CCCcccHHHHHHHHHccCceeeec
Q 018205 34 CAVELDIPEVIHKHGRPITLPQLVSALEIN--PTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 34 ~a~~lglf~~L~~~~~~~t~~ela~~~~~~--~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
+--+.-|++.|...++++|+++|.+.+.-. ..+...+.|.|+.|+..|++.+..
T Consensus 25 T~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~~~ 80 (169)
T PRK11639 25 TPQRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHKVE 80 (169)
T ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEEEe
Confidence 445666777776655799999999888432 125688999999999999998874
No 443
>PRK11534 DNA-binding transcriptional regulator CsiR; Provisional
Probab=70.96 E-value=7.1 Score=33.77 Aligned_cols=37 Identities=16% Similarity=0.225 Sum_probs=33.0
Q ss_pred CCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 48 GRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 48 ~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
|..++..+||+.+|+ +..-++.-|+.|...|+|+...
T Consensus 28 G~~L~e~eLae~lgV---SRtpVREAL~~L~~eGlv~~~~ 64 (224)
T PRK11534 28 DEKLRMSLLTSRYAL---GVGPLREALSQLVAERLVTVVN 64 (224)
T ss_pred CCcCCHHHHHHHHCC---ChHHHHHHHHHHHHCCCEEEeC
Confidence 568899999999999 5678999999999999998774
No 444
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=69.86 E-value=7.4 Score=31.80 Aligned_cols=101 Identities=13% Similarity=0.044 Sum_probs=60.2
Q ss_pred CCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCCCCCc-eEeeCCCCCC---CC-CccEEEEcchhccCC--
Q 018205 195 LGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPDTDNL-KFIAGDMFQS---IP-PADAFFFKAIFHAFV-- 266 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~~v-~~~~~d~~~~---~p-~~D~i~~~~vl~~~~-- 266 (359)
.++.+-+|...=+.-...++ +...++.-+|... -++.- -.+|+ ++.+.||-.. .+ .||.+.+.++++|..
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~-~GA~~iltveyn~L~i~~~-~~dr~ssi~p~df~~~~~~y~~~fD~~as~~siEh~GLG 79 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQ-HGAAKILTVEYNKLEIQEE-FRDRLSSILPVDFAKNWQKYAGSFDFAASFSSIEHFGLG 79 (177)
T ss_pred CceEEEEecCCchhhHHHHH-cCCceEEEEeecccccCcc-cccccccccHHHHHHHHHHhhccchhhheechhcccccc
Confidence 45777788876554443333 3344566666533 11111 12333 3333444221 22 499999998887752
Q ss_pred ---c----hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCC
Q 018205 267 ---D----EDCLKILKRCREAIASRGDRGKVIIIDIVINEK 300 (359)
Q Consensus 267 ---~----~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~ 300 (359)
| .-..+.+++++++||| ||.+++.-++..+.
T Consensus 80 RYGDPidp~Gdl~~m~~i~~vLK~---GG~L~l~vPvG~d~ 117 (177)
T PF03269_consen 80 RYGDPIDPIGDLRAMAKIKCVLKP---GGLLFLGVPVGTDA 117 (177)
T ss_pred ccCCCCCccccHHHHHHHHHhhcc---CCeEEEEeecCCcc
Confidence 1 1224688999999999 99999988877644
No 445
>PRK09334 30S ribosomal protein S25e; Provisional
Probab=69.78 E-value=5.7 Score=28.70 Aligned_cols=36 Identities=25% Similarity=0.204 Sum_probs=32.3
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
.-+|...||+++++ +-.+.++.|+-|+..|++....
T Consensus 40 K~ITps~lserlkI---~~SlAr~~Lr~L~~kG~Ik~V~ 75 (86)
T PRK09334 40 KIVTPYTLASKYGI---KISVAKKVLRELEKRGVLVLYS 75 (86)
T ss_pred cEEcHHHHHHHhcc---hHHHHHHHHHHHHHCCCEEEEe
Confidence 46799999999999 7899999999999999997663
No 446
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=69.70 E-value=4.5 Score=32.64 Aligned_cols=41 Identities=22% Similarity=0.276 Sum_probs=34.5
Q ss_pred CcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCce
Q 018205 39 DIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFF 83 (359)
Q Consensus 39 glf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll 83 (359)
-|+++|... +.+|-++||+.+|+ +...++++|..|...+++
T Consensus 5 ~v~d~L~~~-~~~~dedLa~~l~i---~~n~vRkiL~~L~ed~~~ 45 (147)
T smart00531 5 LVLDALMRN-GCVTEEDLAELLGI---KQKQLRKILYLLYDEKLI 45 (147)
T ss_pred eehHHHHhc-CCcCHHHHHHHhCC---CHHHHHHHHHHHHhhhcc
Confidence 467777664 68999999999999 789999999999995554
No 447
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=69.60 E-value=5 Score=34.42 Aligned_cols=97 Identities=13% Similarity=0.226 Sum_probs=57.1
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCC--CeEEEeecc-cccccCCC----------------------------------
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPG--IKCTVLDLP-HVVPKVPD---------------------------------- 235 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~--~~~~~~D~~-~~~~~a~~---------------------------------- 235 (359)
.++.++.|=.||.|.++.-+.--+++ ..+++-|+. ++++.|++
T Consensus 50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~ 129 (246)
T PF11599_consen 50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALE 129 (246)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 56789999999999987666555544 278999994 48877651
Q ss_pred --------------CCCceEeeCCCCCCCC--------CccEEEEc---chhccCC----chHHHHHHHHHHHhcccCCC
Q 018205 236 --------------TDNLKFIAGDMFQSIP--------PADAFFFK---AIFHAFV----DEDCLKILKRCREAIASRGD 286 (359)
Q Consensus 236 --------------~~~v~~~~~d~~~~~p--------~~D~i~~~---~vl~~~~----~~~~~~~L~~~~~~L~p~~~ 286 (359)
.......+.|+|++.+ ..|+|+.- .-+-.|. .+-..++|..++.+|.+
T Consensus 130 sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~--- 206 (246)
T PF11599_consen 130 SADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPE--- 206 (246)
T ss_dssp HHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-T---
T ss_pred HHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCC---
Confidence 1234677788876321 27888842 1122343 34567899999999954
Q ss_pred CcEEEE
Q 018205 287 RGKVII 292 (359)
Q Consensus 287 gG~lli 292 (359)
++.|.+
T Consensus 207 ~sVV~v 212 (246)
T PF11599_consen 207 RSVVAV 212 (246)
T ss_dssp T-EEEE
T ss_pred CcEEEE
Confidence 444444
No 448
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=69.40 E-value=13 Score=34.04 Aligned_cols=84 Identities=12% Similarity=0.037 Sum_probs=46.1
Q ss_pred CCeEEEeCCCc-c-hHHHHHHHHCCCCeEEEeeccc-ccccCCCCCCceEeeCCCCCCCCCccEEEEcchhccCCchHHH
Q 018205 195 LGSLVDVGGGT-G-SFARIISEAFPGIKCTVLDLPH-VVPKVPDTDNLKFIAGDMFQSIPPADAFFFKAIFHAFVDEDCL 271 (359)
Q Consensus 195 ~~~vlDvG~G~-G-~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~~v~~~~~d~~~~~p~~D~i~~~~vl~~~~~~~~~ 271 (359)
..+|.=||+|. | .++..+.+.....+++++|.+. ..+.+.+..-......+..+....+|+|+.+-- .....
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp-----~~~~~ 80 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVP-----VGASG 80 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCC-----HHHHH
Confidence 46788999886 3 3444454443224789999843 444443221111111222112446898887542 23345
Q ss_pred HHHHHHHHhccc
Q 018205 272 KILKRCREAIAS 283 (359)
Q Consensus 272 ~~L~~~~~~L~p 283 (359)
.+++++...+++
T Consensus 81 ~v~~~l~~~l~~ 92 (307)
T PRK07502 81 AVAAEIAPHLKP 92 (307)
T ss_pred HHHHHHHhhCCC
Confidence 577778778887
No 449
>TIGR03338 phnR_burk phosphonate utilization associated transcriptional regulator. This family of proteins are members of the GntR family (pfam00392) containing an N-terminal helix-turn-helix (HTH) motif. This clade is found adjacent to or inside of operons for the degradation of 2-aminoethylphosphonate (AEP) in Polaromonas, Burkholderia, Ralstonia and Verminephrobacter.
Probab=69.13 E-value=9.8 Score=32.50 Aligned_cols=37 Identities=14% Similarity=0.285 Sum_probs=33.1
Q ss_pred CCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 48 GRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 48 ~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
|..++-.+||+.+|+ +..-++.-|+.|...|+|+...
T Consensus 32 G~~L~e~~La~~lgV---SRtpVReAL~~L~~eGlv~~~~ 68 (212)
T TIGR03338 32 GAKLNESDIAARLGV---SRGPVREAFRALEEAGLVRNEK 68 (212)
T ss_pred CCEecHHHHHHHhCC---ChHHHHHHHHHHHHCCCEEEec
Confidence 568899999999999 5678999999999999998775
No 450
>PF00165 HTH_AraC: Bacterial regulatory helix-turn-helix proteins, AraC family; PDB: 1WPK_A 1ZGW_A 1U8B_A.
Probab=68.81 E-value=4.3 Score=24.68 Aligned_cols=27 Identities=11% Similarity=0.183 Sum_probs=20.5
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHH
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLV 78 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~ 78 (359)
.+.|+++||+.+|+ ++..+.|.++...
T Consensus 7 ~~~~l~~iA~~~g~---S~~~f~r~Fk~~~ 33 (42)
T PF00165_consen 7 QKLTLEDIAEQAGF---SPSYFSRLFKKET 33 (42)
T ss_dssp SS--HHHHHHHHTS----HHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 48999999999999 6788888887654
No 451
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=68.54 E-value=5.4 Score=33.12 Aligned_cols=46 Identities=17% Similarity=0.273 Sum_probs=39.1
Q ss_pred cCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 38 LDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
..|++.|.+. |..|=++||+.+|+ ...-++++|..|...|++....
T Consensus 21 ~~v~~~l~~k-ge~tDeela~~l~i---~~~~vrriL~~L~e~~li~~~k 66 (176)
T COG1675 21 VLVVDALLEK-GELTDEELAELLGI---KKNEVRRILYALYEDGLISYRK 66 (176)
T ss_pred hHHHHHHHhc-CCcChHHHHHHhCc---cHHHHHHHHHHHHhCCceEEEe
Confidence 4467777763 47999999999999 7899999999999999998654
No 452
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=68.41 E-value=7.2 Score=32.57 Aligned_cols=35 Identities=11% Similarity=0.132 Sum_probs=32.6
Q ss_pred CCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 50 PITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 50 ~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
|+|-+|||+.+|+ ....+.|.|+.|...|+++..+
T Consensus 143 ~~t~~~iA~~lG~---tretvsR~l~~l~~~g~I~~~~ 177 (193)
T TIGR03697 143 RLSHQAIAEAIGS---TRVTITRLLGDLRKKKLISIHK 177 (193)
T ss_pred CCCHHHHHHHhCC---cHHHHHHHHHHHHHCCCEEecC
Confidence 7899999999999 6799999999999999998874
No 453
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=68.33 E-value=22 Score=32.74 Aligned_cols=119 Identities=18% Similarity=0.262 Sum_probs=67.4
Q ss_pred EEEeCCCcchHHHHHHHHCCCCeE-EEeeccc-ccccCC-CCCCceEeeCCCCC----CCCCccEEEEcchhccCC----
Q 018205 198 LVDVGGGTGSFARIISEAFPGIKC-TVLDLPH-VVPKVP-DTDNLKFIAGDMFQ----SIPPADAFFFKAIFHAFV---- 266 (359)
Q Consensus 198 vlDvG~G~G~~~~~l~~~~p~~~~-~~~D~~~-~~~~a~-~~~~v~~~~~d~~~----~~p~~D~i~~~~vl~~~~---- 266 (359)
|+|+=||.|.+...+.+. +.++ .++|+.. .++.-+ ..+. .+..+|+.+ .+|.+|+++...-...++
T Consensus 1 vidLF~G~GG~~~Gl~~a--G~~~~~a~e~~~~a~~ty~~N~~~-~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS~ag~ 77 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA--GFKCVFASEIDKYAQKTYEANFGN-KVPFGDITKISPSDIPDFDILLGGFPCQPFSIAGK 77 (315)
T ss_pred CEEEecCccHHHHHHHHc--CCeEEEEEeCCHHHHHHHHHhCCC-CCCccChhhhhhhhCCCcCEEEecCCCcccchhcc
Confidence 589999999999999876 4554 5688843 443322 1222 455677743 256789988543222221
Q ss_pred ----chHHHHHHHHHHHhc---ccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcC
Q 018205 267 ----DEDCLKILKRCREAI---ASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAG 339 (359)
Q Consensus 267 ----~~~~~~~L~~~~~~L---~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aG 339 (359)
++....++..+.+++ +| .+++.|.+..-.. ...| .....|.+.|++.|
T Consensus 78 ~~~~~d~r~~L~~~~~r~i~~~~P-----~~~v~ENV~~l~~------------------~~~~--~~~~~i~~~l~~~G 132 (315)
T TIGR00675 78 RKGFEDTRGTLFFEIVRILKEKKP-----KFFLLENVKGLVS------------------HDKG--RTFKVIIETLEELG 132 (315)
T ss_pred cCCCCCchhhHHHHHHHHHhhcCC-----CEEEeeccHHHHh------------------cccc--hHHHHHHHHHHhCC
Confidence 122223444444444 55 5777775532110 0111 23567788888899
Q ss_pred CceeE
Q 018205 340 FSHFK 344 (359)
Q Consensus 340 f~~~~ 344 (359)
|.+..
T Consensus 133 Y~v~~ 137 (315)
T TIGR00675 133 YKVYY 137 (315)
T ss_pred CEEEE
Confidence 87643
No 454
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=68.16 E-value=7.6 Score=38.55 Aligned_cols=109 Identities=19% Similarity=0.292 Sum_probs=65.8
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCC-CCeEEEeecccccccCCCCCCceEeeCCCCCC---C-------
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFP-GIKCTVLDLPHVVPKVPDTDNLKFIAGDMFQS---I------- 250 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~---~------- 250 (359)
-++...|. .+.+...|||+||..|.++.-.++..| +.-++|+|+-.+... +++...+.|+... +
T Consensus 33 lQln~ky~-fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pikp~----~~c~t~v~dIttd~cr~~l~k~l~ 107 (780)
T KOG1098|consen 33 LQLNKKYK-FLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIKPI----PNCDTLVEDITTDECRSKLRKILK 107 (780)
T ss_pred HHHHHHhc-cccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecccC----CccchhhhhhhHHHHHHHHHHHHH
Confidence 35556665 456788999999999999999998887 446899999442222 3345555555321 1
Q ss_pred -CCccEEE---EcchhccCCchH------HHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 018205 251 -PPADAFF---FKAIFHAFVDED------CLKILKRCREAIASRGDRGKVIIIDIVINE 299 (359)
Q Consensus 251 -p~~D~i~---~~~vl~~~~~~~------~~~~L~~~~~~L~p~~~gG~lli~~~~~~~ 299 (359)
..+|+|+ +.+|--.|..+. ....|+-+...|.. ||. ++.....+.
T Consensus 108 t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~---~g~-fvtkvfrs~ 162 (780)
T KOG1098|consen 108 TWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAK---GGT-FVTKVFRSE 162 (780)
T ss_pred hCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHh---cCc-cccccccCC
Confidence 1367776 233433343221 22345566677777 666 554544433
No 455
>PF02295 z-alpha: Adenosine deaminase z-alpha domain; InterPro: IPR000607 Double-stranded RNA-specific adenosine deaminase (3.5 from EC) converts multiple adenosines to inosines and creates I/U mismatched base pairs in double-helical RNA substrates without apparent sequence specificity. DRADA has been found to modify adenosines in AU-rich regions more frequently, probably due to the relative ease of melting A/U base pairs compared to G/C base pairs. The protein functions to modify viral RNA genomes, and may be responsible for hypermutation of certain negative-stranded viruses. DRADA edits the mRNAs for the glutamate receptor subunits by site-selective adenosine deamination. The DRADA repeat is also found in viral E3 proteins, which contain a double-stranded RNA-binding domain.; GO: 0003723 RNA binding, 0003726 double-stranded RNA adenosine deaminase activity; PDB: 1OYI_A 3EYI_A 2L4M_A 2HEO_D 1J75_A 1SFU_B 3IRR_B 2ACJ_C 3F22_B 2L54_A ....
Probab=68.11 E-value=2 Score=29.42 Aligned_cols=60 Identities=17% Similarity=0.206 Sum_probs=41.4
Q ss_pred HhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccc
Q 018205 36 VELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTL 103 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~ 103 (359)
.+-.|++.|...| +.++..+|...|++- +..-+.+.|..|...|.+...+.+ +-.|+++.
T Consensus 5 ~ee~Il~~L~~~g-~~~a~~ia~~~~L~~-~kk~VN~~LY~L~k~g~v~k~~~~------PP~W~l~~ 64 (66)
T PF02295_consen 5 LEEKILDFLKELG-GSTATAIAKALGLSV-PKKEVNRVLYRLEKQGKVCKEGGT------PPKWSLTE 64 (66)
T ss_dssp HHHHHHHHHHHHT-SSEEEHHHHHHHHTS--HHHHHHHHHHHHHTTSEEEECSS------STEEEE-H
T ss_pred HHHHHHHHHHhcC-CccHHHHHHHhCcch-hHHHHHHHHHHHHHCCCEeeCCCC------CCceEecc
Confidence 4556777777754 677777777776631 368899999999999999877421 45566553
No 456
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=67.85 E-value=3.5 Score=35.98 Aligned_cols=78 Identities=22% Similarity=0.376 Sum_probs=44.3
Q ss_pred HHHHHhcccccCCC--CeEEEeCCCcchHHHHHHHHCCCCeEEEeeccccccc-CC----------C-----CCCceEee
Q 018205 182 NLIVKDCQPIFQGL--GSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPK-VP----------D-----TDNLKFIA 243 (359)
Q Consensus 182 ~~~~~~~~~~~~~~--~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~-a~----------~-----~~~v~~~~ 243 (359)
+.+++... +.+. .+|||.=+|-|.-+.-++.. +++|++++.+.++.. .+ . ..|++++.
T Consensus 63 ~~l~kA~G--lk~~~~~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~ 138 (234)
T PF04445_consen 63 DPLAKAVG--LKPGMRPSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIH 138 (234)
T ss_dssp SHHHHHTT---BTTB---EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEE
T ss_pred cHHHHHhC--CCCCCCCEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEc
Confidence 45666665 3333 49999999999999988865 779999999654321 11 1 25899999
Q ss_pred CCCCCC--C--CCccEEEEcchhc
Q 018205 244 GDMFQS--I--PPADAFFFKAIFH 263 (359)
Q Consensus 244 ~d~~~~--~--p~~D~i~~~~vl~ 263 (359)
+|..+- . ..+|+|.+-=++.
T Consensus 139 ~d~~~~L~~~~~s~DVVY~DPMFp 162 (234)
T PF04445_consen 139 GDALEYLRQPDNSFDVVYFDPMFP 162 (234)
T ss_dssp S-CCCHCCCHSS--SEEEE--S--
T ss_pred CCHHHHHhhcCCCCCEEEECCCCC
Confidence 998652 2 2499998755543
No 457
>PF08221 HTH_9: RNA polymerase III subunit RPC82 helix-turn-helix domain; InterPro: IPR013197 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This family consists of several DNA-directed RNA polymerase III polypeptides which are related to the Saccharomyces cerevisiae (Baker's yeast) RPC82 protein. RNA polymerase C (III) promotes the transcription of tRNA and 5S RNA genes. In S. cerevisiae, the enzyme is composed of 15 subunits, ranging from 10 kDa to about 160 kDa []. This region is probably a DNA-binding helix-turn-helix.; PDB: 2XV4_S 2XUB_A.
Probab=67.35 E-value=4.3 Score=27.36 Aligned_cols=42 Identities=17% Similarity=0.246 Sum_probs=32.5
Q ss_pred chhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeee
Q 018205 41 PEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTA 86 (359)
Q Consensus 41 f~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~ 86 (359)
++.|-.. |+.|+.+|.+.+++ +.+.++.-|-.|...|++...
T Consensus 19 ~~~Ll~~-G~ltl~~i~~~t~l---~~~~Vk~~L~~LiQh~~v~y~ 60 (62)
T PF08221_consen 19 GEVLLSR-GRLTLREIVRRTGL---SPKQVKKALVVLIQHNLVQYF 60 (62)
T ss_dssp HHHHHHC--SEEHHHHHHHHT-----HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHc-CCcCHHHHHHHhCC---CHHHHHHHHHHHHHcCCeeee
Confidence 4444443 79999999999999 678999999999999999764
No 458
>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional
Probab=67.26 E-value=5 Score=33.37 Aligned_cols=48 Identities=13% Similarity=0.145 Sum_probs=40.0
Q ss_pred HhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeee
Q 018205 36 VELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTA 86 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~ 86 (359)
++..|++.|...|...|+.+||+++|+ +...+.|.|..|...|.|...
T Consensus 5 ~~~~i~~~l~~~~~~~~a~~i~k~l~i---~k~~vNr~LY~L~~~~~v~~~ 52 (183)
T PHA02701 5 CASLILTLLSSSGDKLPAKRIAKELGI---SKHEANRCLYRLLESDAVSCE 52 (183)
T ss_pred HHHHHHHHHHhcCCCCcHHHHHHHhCc---cHHHHHHHHHHHhhcCcEecC
Confidence 456788999886546999999999999 567799999999989888654
No 459
>COG1725 Predicted transcriptional regulators [Transcription]
Probab=67.23 E-value=8.7 Score=29.98 Aligned_cols=35 Identities=14% Similarity=0.228 Sum_probs=31.9
Q ss_pred CCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 50 PITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 50 ~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
=.|+-|+|..+|+ |...+.|..+.|+..|++...+
T Consensus 35 LPSvRelA~~~~V---NpnTv~raY~eLE~eG~i~t~r 69 (125)
T COG1725 35 LPSVRELAKDLGV---NPNTVQRAYQELEREGIVETKR 69 (125)
T ss_pred CCcHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEec
Confidence 4599999999999 6789999999999999998876
No 460
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=67.16 E-value=4.8 Score=32.38 Aligned_cols=54 Identities=13% Similarity=0.250 Sum_probs=42.7
Q ss_pred HHHhcCcchhcccCCCCCCHHHHHHhcCC--CCCCcccHHHHHHHHHccCceeeec
Q 018205 34 CAVELDIPEVIHKHGRPITLPQLVSALEI--NPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 34 ~a~~lglf~~L~~~~~~~t~~ela~~~~~--~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
+--++.|++.|.+.+++.|+++|-+.+.- ++.+...++|-|+.|+..|++.+-.
T Consensus 20 T~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv~~~~ 75 (145)
T COG0735 20 TPQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLVHRLE 75 (145)
T ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCEEEEE
Confidence 34567788888876678999999988753 2225688999999999999998764
No 461
>PF09681 Phage_rep_org_N: N-terminal phage replisome organiser (Phage_rep_org_N); InterPro: IPR010056 This entry is represented by the N-terminal domain of Bacteriophage A500, Gp45. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The proteins in this entry contains a region of low-complexity sequence that reflects DNA direct repeats able to function as an origin of phage replication. The low-complexity region is adjacent to this N-terminal domain.
Probab=66.87 E-value=11 Score=29.36 Aligned_cols=44 Identities=11% Similarity=0.150 Sum_probs=38.8
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccc
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTL 103 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~ 103 (359)
-|.|.++||..++- +.+.++.-|.+|...|+++... ++.|..+.
T Consensus 52 ipy~~e~LA~~~~~---~~~~V~~AL~~f~k~glIe~~e--------d~~i~i~~ 95 (121)
T PF09681_consen 52 IPYTAEMLALEFDR---PVDTVRLALAVFQKLGLIEIDE--------DGVIYIPN 95 (121)
T ss_pred CCCcHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEec--------CCeEEeec
Confidence 59999999999998 7899999999999999999875 57776654
No 462
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=66.78 E-value=14 Score=33.71 Aligned_cols=86 Identities=17% Similarity=0.259 Sum_probs=56.7
Q ss_pred CCeEEEeCCCc-chHHHHHHHHCCCCeEEEeecc-cccccCCC--CCCceEeeCCCC---CCCCCccEEEEcchhccCCc
Q 018205 195 LGSLVDVGGGT-GSFARIISEAFPGIKCTVLDLP-HVVPKVPD--TDNLKFIAGDMF---QSIPPADAFFFKAIFHAFVD 267 (359)
Q Consensus 195 ~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~--~~~v~~~~~d~~---~~~p~~D~i~~~~vl~~~~~ 267 (359)
..+|+-+|+|. |.-+..++--. +..++.+|++ .-++.... ..|+...-.+.. +...++|+++..-.+---..
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~gl-gA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgaka 246 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGL-GADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKA 246 (371)
T ss_pred CccEEEECCccccchHHHHHhcc-CCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCC
Confidence 46788889885 66666666544 6789999995 35554442 456666655442 24667999887554433334
Q ss_pred hHHHHHHHHHHHhccc
Q 018205 268 EDCLKILKRCREAIAS 283 (359)
Q Consensus 268 ~~~~~~L~~~~~~L~p 283 (359)
+.. +.++..+.|+|
T Consensus 247 PkL--vt~e~vk~Mkp 260 (371)
T COG0686 247 PKL--VTREMVKQMKP 260 (371)
T ss_pred cee--hhHHHHHhcCC
Confidence 433 78888999999
No 463
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=66.66 E-value=27 Score=32.05 Aligned_cols=95 Identities=13% Similarity=0.182 Sum_probs=63.6
Q ss_pred cCCCCeEEEeCCCc-chHHHHHHHHCCCCeEEEeecc-cccccCCCCCCceEeeCCCC--------C----CCC--CccE
Q 018205 192 FQGLGSLVDVGGGT-GSFARIISEAFPGIKCTVLDLP-HVVPKVPDTDNLKFIAGDMF--------Q----SIP--PADA 255 (359)
Q Consensus 192 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~v~~~~~d~~--------~----~~p--~~D~ 255 (359)
+....+||-+|+|. |.++...++.+--.+++++|+. .-++.|++ -..+....+.. + ... .+|+
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~ 245 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGATVTDPSSHKSSPQELAELVEKALGKKQPDV 245 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCeEEeeccccccHHHHHHHHHhhccccCCCe
Confidence 56789999999996 8888888898877899999994 48887774 11111111110 0 011 2788
Q ss_pred EEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecC
Q 018205 256 FFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVIN 298 (359)
Q Consensus 256 i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~ 298 (359)
.+-+..++ ..++....++++ +|.++++....+
T Consensus 246 ~~dCsG~~--------~~~~aai~a~r~---gGt~vlvg~g~~ 277 (354)
T KOG0024|consen 246 TFDCSGAE--------VTIRAAIKATRS---GGTVVLVGMGAE 277 (354)
T ss_pred EEEccCch--------HHHHHHHHHhcc---CCEEEEeccCCC
Confidence 77665553 256666778998 899888775543
No 464
>PF06969 HemN_C: HemN C-terminal domain; InterPro: IPR010723 Proteins containing this domain are all oxygen-independent coproporphyrinogen-III oxidases (HemN). This enzyme catalyses the oxygen-independent conversion of coproporphyrinogen-III to protoporphyrinogen-IX [], one of the last steps in haem biosynthesis. The function of this domain is unclear, but comparison to other proteins containing a radical SAM domain suggest it may be a substrate binding domain.; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin-containing compound biosynthetic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1OLT_A.
Probab=66.46 E-value=6.7 Score=26.49 Aligned_cols=47 Identities=19% Similarity=0.244 Sum_probs=34.5
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccccc
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSK 106 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~ 106 (359)
.+++.+++.++.|.+ -.+.....+..+.+.|+++.+ ++++++|+.+.
T Consensus 19 ~Gi~~~~~~~~~g~~--~~~~~~~~l~~l~~~Gll~~~---------~~~l~lT~~G~ 65 (66)
T PF06969_consen 19 EGIDLSEFEQRFGID--FAEEFQKELEELQEDGLLEID---------GGRLRLTEKGR 65 (66)
T ss_dssp SEEEHHHHHHHTT----THHH-HHHHHHHHHTTSEEE----------SSEEEE-TTTG
T ss_pred CCcCHHHHHHHHCcC--HHHHHHHHHHHHHHCCCEEEe---------CCEEEECcccC
Confidence 488999999999984 234557778899999999988 59999998763
No 465
>PF01358 PARP_regulatory: Poly A polymerase regulatory subunit; InterPro: IPR000176 This family contains viral proteins that are bifunctional, acting as both an mRNA cap-specific RNA 2'-O-methyltransferase, which methylates the ribose 2' OH group of the first transcribed nucleotide, thereby producing a 2'-o-methylpurine cap and a poly(A) polymerase processivity factor which binds to Poly(A) but has no catalytic activity. The structure of this protein is known [].; GO: 0004483 mRNA (nucleoside-2'-O-)-methyltransferase activity, 0006370 mRNA capping, 0006397 mRNA processing; PDB: 4DCG_A 1B42_A 3ERC_A 1AV6_A 2VP3_A 1JTF_A 1JTE_A 1VP3_A 3ER9_A 1P39_A ....
Probab=65.96 E-value=7.2 Score=34.98 Aligned_cols=53 Identities=19% Similarity=0.359 Sum_probs=34.2
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCe----EEEeecccccccCCCCCCceEeeCC
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIK----CTVLDLPHVVPKVPDTDNLKFIAGD 245 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~----~~~~D~~~~~~~a~~~~~v~~~~~d 245 (359)
.+...||=+|++.|.+...|.+.+|+.. .+.+|+.......++..+|+++..=
T Consensus 57 ~~~~~VVYiGsApG~Hi~~L~~lf~~~~~~i~wvLiDp~~f~~~l~~l~~v~l~~~f 113 (294)
T PF01358_consen 57 DGPVTVVYIGSAPGTHIPFLFDLFPDLKVPIKWVLIDPRPFCISLEELSNVTLIQRF 113 (294)
T ss_dssp TT-EEEEEES-SS-HHHHHHHHHHHHTT--EEEEEEESS---GGGTT-TTEEEEES-
T ss_pred CCceEEEEecCCCcchHHHHHHHHHhcCCceEEEEECCcchhhhhcccCcEEeehhh
Confidence 4557899999999999999999998755 8999986544444433445555443
No 466
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=65.91 E-value=6.1 Score=34.11 Aligned_cols=45 Identities=11% Similarity=0.154 Sum_probs=36.4
Q ss_pred CcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeee
Q 018205 39 DIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTA 86 (359)
Q Consensus 39 glf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~ 86 (359)
.|+..+.+..++.|.+|||+++++ .+..+++.+..|+..|++...
T Consensus 166 ~Vl~~~~~g~~g~s~~eIa~~l~i---S~~Tv~~~~~~~~~~~~~~~~ 210 (225)
T PRK10046 166 AVRKLFKEPGVQHTAETVAQALTI---SRTTARRYLEYCASRHLIIAE 210 (225)
T ss_pred HHHHHHHcCCCCcCHHHHHHHhCc---cHHHHHHHHHHHHhCCeEEEE
Confidence 345556541126899999999999 678999999999999999876
No 467
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=65.89 E-value=8.6 Score=32.65 Aligned_cols=35 Identities=14% Similarity=0.251 Sum_probs=32.2
Q ss_pred CCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 50 PITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 50 ~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
+.|-++||+.+|+ ....+.|.|+.|...|++...+
T Consensus 168 ~~t~~~lA~~lG~---tr~tvsR~l~~l~~~gii~~~~ 202 (211)
T PRK11753 168 KITRQEIGRIVGC---SREMVGRVLKMLEDQGLISAHG 202 (211)
T ss_pred CCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEecC
Confidence 7899999999999 5789999999999999998773
No 468
>PRK01381 Trp operon repressor; Provisional
Probab=65.63 E-value=5.4 Score=29.62 Aligned_cols=41 Identities=10% Similarity=0.102 Sum_probs=31.8
Q ss_pred HHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHH
Q 018205 33 KCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLV 78 (359)
Q Consensus 33 ~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~ 78 (359)
..+.+++|+..|.+ |++|--|||+.+|+ ....+.|--++|-
T Consensus 40 al~~R~~I~~~L~~--g~~sQREIa~~lGv---SiaTITRgsn~Lk 80 (99)
T PRK01381 40 ALGTRVRIVEELLR--GELSQREIKQELGV---GIATITRGSNSLK 80 (99)
T ss_pred HHHHHHHHHHHHHc--CCcCHHHHHHHhCC---ceeeehhhHHHhc
Confidence 45788999999987 79999999999999 4455555544443
No 469
>TIGR03879 near_KaiC_dom probable regulatory domain. This model describes a common domain shared by two different families of proteins, each of which occurs regularly next to its corresponding partner family, a probable regulatory with homology to KaiC. By implication, this protein family likely is also involved in sensory transduction and/or regulation.
Probab=65.19 E-value=4.5 Score=28.25 Aligned_cols=33 Identities=9% Similarity=0.026 Sum_probs=28.2
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCcee
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFS 84 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~ 84 (359)
..+|..|||+.+|+ ++..+..++..+...|.+.
T Consensus 31 eGlS~kEIAe~LGI---S~~TVk~~l~~~~~~~~~~ 63 (73)
T TIGR03879 31 AGKTASEIAEELGR---TEQTVRNHLKGETKAGGLV 63 (73)
T ss_pred cCCCHHHHHHHHCc---CHHHHHHHHhcCcccchHH
Confidence 48999999999999 6788999988887777664
No 470
>PRK10736 hypothetical protein; Provisional
Probab=65.03 E-value=8.6 Score=36.15 Aligned_cols=45 Identities=4% Similarity=0.042 Sum_probs=38.4
Q ss_pred cCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 38 LDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
..|++.|.. .|.++++|+.++|+ +...+...|-.|+-.|++....
T Consensus 311 ~~v~~~l~~--~~~~iD~L~~~~~l---~~~~v~~~L~~LEl~G~v~~~~ 355 (374)
T PRK10736 311 PELLANVGD--EVTPVDVVAERAGQ---PVPEVVTQLLELELAGWIAAVP 355 (374)
T ss_pred HHHHHhcCC--CCCCHHHHHHHHCc---CHHHHHHHHHHHHhCCcEEEcC
Confidence 356667754 68999999999999 6788889999999999999885
No 471
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=65.02 E-value=15 Score=35.01 Aligned_cols=102 Identities=17% Similarity=0.307 Sum_probs=66.9
Q ss_pred CCCeEEEeC---CC----cchHHHHHHHHCCCCeEEEeec--ccccccCC---CCCCceEeeCCCC-CCC----------
Q 018205 194 GLGSLVDVG---GG----TGSFARIISEAFPGIKCTVLDL--PHVVPKVP---DTDNLKFIAGDMF-QSI---------- 250 (359)
Q Consensus 194 ~~~~vlDvG---~G----~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a~---~~~~v~~~~~d~~-~~~---------- 250 (359)
++..|+=|| +| +|-++.+|.++....-++..|. |..++..+ +.-++.|..-+-. +|.
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~a 178 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKA 178 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHH
Confidence 456677775 33 2345555555444455788898 55666554 3455666655321 121
Q ss_pred --CCccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecC
Q 018205 251 --PPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVIN 298 (359)
Q Consensus 251 --p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~ 298 (359)
..+|+|++--.=.+.-|++...=+++++++++| .-.++|+|....
T Consensus 179 k~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P---~E~llVvDam~G 225 (451)
T COG0541 179 KEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINP---DETLLVVDAMIG 225 (451)
T ss_pred HHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCC---CeEEEEEecccc
Confidence 138999986665555578888889999999999 899999997654
No 472
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=64.90 E-value=17 Score=31.50 Aligned_cols=34 Identities=12% Similarity=0.310 Sum_probs=31.6
Q ss_pred CCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeee
Q 018205 50 PITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTA 86 (359)
Q Consensus 50 ~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~ 86 (359)
++|-++||..+|+ ....+.|.|+.|...|+++..
T Consensus 179 ~lt~~~IA~~lGi---sretlsR~L~~L~~~GlI~~~ 212 (230)
T PRK09391 179 PMSRRDIADYLGL---TIETVSRALSQLQDRGLIGLS 212 (230)
T ss_pred cCCHHHHHHHHCC---CHHHHHHHHHHHHHCCcEEec
Confidence 7899999999999 578999999999999999876
No 473
>PRK11414 colanic acid/biofilm transcriptional regulator; Provisional
Probab=64.72 E-value=12 Score=32.38 Aligned_cols=37 Identities=19% Similarity=0.196 Sum_probs=32.8
Q ss_pred CCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 48 GRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 48 ~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
|..++..+||+.+|+ +..-++.-|+.|...|+|+...
T Consensus 32 G~~L~e~~La~~lgV---SRtpVREAL~~L~~eGLV~~~~ 68 (221)
T PRK11414 32 GARLITKNLAEQLGM---SITPVREALLRLVSVNALSVAP 68 (221)
T ss_pred CCccCHHHHHHHHCC---CchhHHHHHHHHHHCCCEEecC
Confidence 567888999999999 5678899999999999998764
No 474
>PRK11642 exoribonuclease R; Provisional
Probab=64.50 E-value=7.6 Score=40.62 Aligned_cols=48 Identities=21% Similarity=0.323 Sum_probs=37.3
Q ss_pred cchhcccCCCCCCHHHHHHhcCCCCC-CcccHHHHHHHHHccCceeeec
Q 018205 40 IPEVIHKHGRPITLPQLVSALEINPT-KADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 40 lf~~L~~~~~~~t~~ela~~~~~~~~-~~~~l~~~L~~L~~~gll~~~~ 87 (359)
|++.|...+.|++.++|++.++++.. ....|.+.|+.|...|.|....
T Consensus 24 Il~~l~~~~~~~~~~~L~~~l~l~~~~~~~~l~~~L~~L~~~g~l~~~~ 72 (813)
T PRK11642 24 ILEHLTKREKPASREELAVELNIEGEEQLEALRRRLRAMERDGQLVFTR 72 (813)
T ss_pred HHHHHHhcCCCCCHHHHHHHhCCCChHHHHHHHHHHHHHHHCCCEEEcC
Confidence 45555443479999999999999632 2356999999999999998764
No 475
>TIGR03433 padR_acidobact transcriptional regulator, Acidobacterial, PadR-family. Members of this protein family are putative transcriptional regulators of the PadR family, as found in species of the Acidobacteria. This family of proteins has expanded greatly in this lineage, and where it regularly is found in the vicinity of a putative transporter protein
Probab=64.10 E-value=13 Score=27.65 Aligned_cols=63 Identities=13% Similarity=0.264 Sum_probs=41.9
Q ss_pred chhcccCCCCCCHHHHHHhc--------CCCCCCcccHHHHHHHHHccCceeeecccccccC-ccceEeccccccccc
Q 018205 41 PEVIHKHGRPITLPQLVSAL--------EINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQ-EEEAYALTLTSKLFL 109 (359)
Q Consensus 41 f~~L~~~~~~~t~~ela~~~--------~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~-~~~~~~~t~~~~~l~ 109 (359)
+-.|.+ +|++--||.+.+ .+ +...+.+.|+.|+..|+++..... .+.+ ....|++|+.++...
T Consensus 10 L~~L~~--~~~~GYei~~~l~~~~~~~~~i---~~gtlY~~L~rLe~~GlI~~~~~~-~~~~~~rk~y~iT~~Gr~~l 81 (100)
T TIGR03433 10 LKTLSL--GPLHGYGIAQRIQQISEDVLQV---EEGSLYPALHRLERRGWIAAEWGE-SENNRRAKFYRLTAAGRKQL 81 (100)
T ss_pred HHHHhc--CCCCHHHHHHHHHHHcCCcccc---CCCcHHHHHHHHHHCCCeEEEeee-cCCCCCceEEEECHHHHHHH
Confidence 344554 577877777765 34 668899999999999999874211 0111 124599998887544
No 476
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=63.56 E-value=9.5 Score=33.09 Aligned_cols=35 Identities=11% Similarity=0.272 Sum_probs=32.4
Q ss_pred CCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 50 PITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 50 ~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
++|-++||+.+|+ ....+.|.|+.|...|+++..+
T Consensus 184 ~lt~~~iA~~lG~---sr~tvsR~l~~l~~~g~I~~~~ 218 (235)
T PRK11161 184 TMTRGDIGNYLGL---TVETISRLLGRFQKSGMLAVKG 218 (235)
T ss_pred cccHHHHHHHhCC---cHHHHHHHHHHHHHCCCEEecC
Confidence 7899999999999 5789999999999999999884
No 477
>PRK09462 fur ferric uptake regulator; Provisional
Probab=63.09 E-value=9.3 Score=30.75 Aligned_cols=54 Identities=15% Similarity=0.223 Sum_probs=40.6
Q ss_pred HHHhcCcchhcccC-CCCCCHHHHHHhcCCC--CCCcccHHHHHHHHHccCceeeec
Q 018205 34 CAVELDIPEVIHKH-GRPITLPQLVSALEIN--PTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 34 ~a~~lglf~~L~~~-~~~~t~~ela~~~~~~--~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
+--+.-|++.|... +++.|++||-+.+.-. ..+...+.|.|+.|+..|++.+..
T Consensus 16 T~qR~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~~~~ 72 (148)
T PRK09462 16 TLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHN 72 (148)
T ss_pred CHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 44566677888653 3699999999888421 125688999999999999998763
No 478
>PF03297 Ribosomal_S25: S25 ribosomal protein; InterPro: IPR004977 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S25 ribosomal protein is a component of the 40S ribosomal subunit.; PDB: 2XZM_8 2XZN_8 3O30_Q 3U5G_Z 3IZB_V 3U5C_Z 3O2Z_Q 3IZ6_V.
Probab=62.90 E-value=9.2 Score=28.82 Aligned_cols=36 Identities=25% Similarity=0.259 Sum_probs=32.6
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
.-+|+..||+++++ +-.+.++.|+.|.+.|++....
T Consensus 58 K~ITp~~lserlkI---~~SlAr~~Lr~L~~kG~Ik~V~ 93 (105)
T PF03297_consen 58 KLITPSVLSERLKI---NGSLARKALRELESKGLIKPVS 93 (105)
T ss_dssp SCECHHHHHHHHCC---SCHHHHHHHHHHHHCCSSEEEE
T ss_pred cEeeHHHHHHhHhh---HHHHHHHHHHHHHHCCCEEEEe
Confidence 46799999999999 6899999999999999998764
No 479
>COG0640 ArsR Predicted transcriptional regulators [Transcription]
Probab=62.48 E-value=9.8 Score=27.56 Aligned_cols=54 Identities=17% Similarity=0.295 Sum_probs=43.9
Q ss_pred HHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 30 TSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 30 ~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
.++....++.++..|.+. .+.++.+|+..+++ ....+.+.|..|...|+++...
T Consensus 20 ~~l~~~~r~~il~~l~~~-~~~~~~~l~~~~~~---~~~~v~~hL~~L~~~glv~~~~ 73 (110)
T COG0640 20 KALADPTRLEILSLLAEG-GELTVGELAEALGL---SQSTVSHHLKVLREAGLVELRR 73 (110)
T ss_pred HHhCCHHHHHHHHHHHhc-CCccHHHHHHHHCC---ChhHHHHHHHHHHHCCCeEEEe
Confidence 344455677777777762 37899999999999 6899999999999999999865
No 480
>COG1802 GntR Transcriptional regulators [Transcription]
Probab=62.23 E-value=18 Score=31.40 Aligned_cols=37 Identities=16% Similarity=0.277 Sum_probs=33.3
Q ss_pred CCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 48 GRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 48 ~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
|.+++-.+||+.+|++ .--++.-|..|++.|+|+...
T Consensus 37 G~~l~e~~La~~~gvS---rtPVReAL~rL~~eGlv~~~p 73 (230)
T COG1802 37 GERLSEEELAEELGVS---RTPVREALRRLEAEGLVEIEP 73 (230)
T ss_pred CCCccHHHHHHHhCCC---CccHHHHHHHHHHCCCeEecC
Confidence 5799999999999994 566899999999999999885
No 481
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=62.18 E-value=82 Score=25.68 Aligned_cols=132 Identities=20% Similarity=0.235 Sum_probs=69.3
Q ss_pred CCCcchHHHHHHHHC--CCCeEEEeecc-cccccCCCCCCceEeeCCCCCC------CCCccEEEEcchhccCCchHHHH
Q 018205 202 GGGTGSFARIISEAF--PGIKCTVLDLP-HVVPKVPDTDNLKFIAGDMFQS------IPPADAFFFKAIFHAFVDEDCLK 272 (359)
Q Consensus 202 G~G~G~~~~~l~~~~--p~~~~~~~D~~-~~~~~a~~~~~v~~~~~d~~~~------~p~~D~i~~~~vl~~~~~~~~~~ 272 (359)
=||+|..+..+++.. .+.+++++-.+ +-.+. ..+++++.+|+.+. +.++|.|++...- ...+ ..
T Consensus 4 ~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~---~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~--~~~~--~~ 76 (183)
T PF13460_consen 4 FGATGFVGRALAKQLLRRGHEVTALVRSPSKAED---SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP--PPKD--VD 76 (183)
T ss_dssp ETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH---CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS--TTTH--HH
T ss_pred ECCCChHHHHHHHHHHHCCCEEEEEecCchhccc---ccccccceeeehhhhhhhhhhhhcchhhhhhhh--hccc--cc
Confidence 356777666665543 24688887663 32222 67899999999763 2368988876532 2222 44
Q ss_pred HHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCceeEEEEe
Q 018205 273 ILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 273 ~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~~~~~ 348 (359)
..+.+.++++..+ -.++++.....-...... ...+... ...........+..+.+++.|+...-+++.
T Consensus 77 ~~~~~~~a~~~~~-~~~~v~~s~~~~~~~~~~------~~~~~~~-~~~~~~~~~~~~~e~~~~~~~~~~~ivrp~ 144 (183)
T PF13460_consen 77 AAKNIIEAAKKAG-VKRVVYLSSAGVYRDPPG------LFSDEDK-PIFPEYARDKREAEEALRESGLNWTIVRPG 144 (183)
T ss_dssp HHHHHHHHHHHTT-SSEEEEEEETTGTTTCTS------EEEGGTC-GGGHHHHHHHHHHHHHHHHSTSEEEEEEES
T ss_pred ccccccccccccc-cccceeeeccccCCCCCc------ccccccc-cchhhhHHHHHHHHHHHHhcCCCEEEEECc
Confidence 5666666665411 235666554443322110 0000000 000011223445567778889876666554
No 482
>PRK13699 putative methylase; Provisional
Probab=62.07 E-value=40 Score=29.33 Aligned_cols=76 Identities=16% Similarity=0.166 Sum_probs=0.0
Q ss_pred ceEeeCCCCC---CCCC--ccEEEEc-------------chhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCC
Q 018205 239 LKFIAGDMFQ---SIPP--ADAFFFK-------------AIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEK 300 (359)
Q Consensus 239 v~~~~~d~~~---~~p~--~D~i~~~-------------~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~ 300 (359)
.++..+|..+ .+|. +|+|+.. ..-.....+-....+++++++|+| ||.+++.-
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKp---gg~l~if~------ 72 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKK---DALMVSFY------ 72 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCC---CCEEEEEe------
Q ss_pred CcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCceeEEE
Q 018205 301 KEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKIT 346 (359)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~~~ 346 (359)
.......+..+++++||......
T Consensus 73 -----------------------~~~~~~~~~~al~~~GF~l~~~I 95 (227)
T PRK13699 73 -----------------------GWNRVDRFMAAWKNAGFSVVGHL 95 (227)
T ss_pred -----------------------ccccHHHHHHHHHHCCCEEeeEE
No 483
>PF09929 DUF2161: Uncharacterized conserved protein (DUF2161); InterPro: IPR018679 This family of various hypothetical prokaryotic proteins has no known function.
Probab=61.97 E-value=20 Score=27.56 Aligned_cols=57 Identities=26% Similarity=0.459 Sum_probs=40.4
Q ss_pred HHHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccccc
Q 018205 29 STSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSK 106 (359)
Q Consensus 29 ~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~ 106 (359)
-.+|++|. .|.++ ||.+..+|++.++++ ...++|+-= .-|.|++.+ .|.|.+|+.++
T Consensus 59 Q~Al~~A~------~L~~~-Gp~~~~~l~~~~~~~-----~A~~IL~~N-~YGWFeRv~--------rGvY~LT~~G~ 115 (118)
T PF09929_consen 59 QDALRCAA------ALAEH-GPSRPADLRKATGVP-----KATSILRDN-HYGWFERVE--------RGVYALTPAGR 115 (118)
T ss_pred HHHHHHHH------HHHHc-CCCCHHHHHHhcCCC-----hHHHHHHhC-cccceeeec--------cceEecCcchh
Confidence 34555554 45543 799999999999993 334555443 368888886 79999999875
No 484
>COG1846 MarR Transcriptional regulators [Transcription]
Probab=61.83 E-value=5.8 Score=30.18 Aligned_cols=67 Identities=15% Similarity=0.210 Sum_probs=45.3
Q ss_pred HhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc-cceEeccccccccc
Q 018205 36 VELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE-EEAYALTLTSKLFL 109 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~-~~~~~~t~~~~~l~ 109 (359)
.+..++..|... ++.+..+||+.+++ +...+.++++.|+..|++++.... .|. .-.+.+|+.++.+.
T Consensus 23 ~q~~~L~~l~~~-~~~~~~~la~~l~i---~~~~vt~~l~~Le~~glv~r~~~~---~DrR~~~l~lT~~G~~~~ 90 (126)
T COG1846 23 PQYQVLLALYEA-GGITVKELAERLGL---DRSTVTRLLKRLEDKGLIERLRDP---EDRRAVLVRLTEKGRELL 90 (126)
T ss_pred HHHHHHHHHHHh-CCCcHHHHHHHHCC---CHHHHHHHHHHHHHCCCeeecCCc---cccceeeEEECccHHHHH
Confidence 444555556553 34443999999999 679999999999999999987521 110 12366777665443
No 485
>PRK13750 replication protein; Provisional
Probab=61.56 E-value=20 Score=31.32 Aligned_cols=59 Identities=8% Similarity=0.070 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCc------ccHHHHHHHHHccCceeeec
Q 018205 25 NYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKA------DGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 25 g~~~~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~------~~l~~~L~~L~~~gll~~~~ 87 (359)
..+.+.+...+..+++...+. ..|+++||..||++-.+. ....|++..|+.+|++..+.
T Consensus 70 rAi~A~lqaMlyh~Ni~S~~V----~aSIeqLadeCGLST~S~aGnkSITRASR~I~fLEpmGfI~cek 134 (285)
T PRK13750 70 RAIDALLQGLCFHYDPLANRV----QCSITTLAIECGLATESAAGKLSITRATRALTFLAELGLITYQT 134 (285)
T ss_pred HHHHHHHHHHHHHcCcchhHH----HHHHHHHHHHhCCcccCcCCCcchHHHHHHHHHHHhcCceeeee
Confidence 345555666677777777764 689999999999963222 35678888999999998875
No 486
>PRK08507 prephenate dehydrogenase; Validated
Probab=61.23 E-value=16 Score=32.72 Aligned_cols=79 Identities=16% Similarity=0.143 Sum_probs=44.7
Q ss_pred eEEEeCCCc--chHHHHHHHHCCCCeEEEeeccc-ccccCCCCCCceEeeCCCCCCCCCccEEEEcchhccCCchHHHHH
Q 018205 197 SLVDVGGGT--GSFARIISEAFPGIKCTVLDLPH-VVPKVPDTDNLKFIAGDMFQSIPPADAFFFKAIFHAFVDEDCLKI 273 (359)
Q Consensus 197 ~vlDvG~G~--G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~~v~~~~~d~~~~~p~~D~i~~~~vl~~~~~~~~~~~ 273 (359)
+|.=||+|. |.++..+.+.....+++++|.+. .++.+.+..-+.. ..+. .+...+|+|+++- +......+
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~-~~~~-~~~~~aD~Vilav-----p~~~~~~~ 74 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDE-IVSF-EELKKCDVIFLAI-----PVDAIIEI 74 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcc-cCCH-HHHhcCCEEEEeC-----cHHHHHHH
Confidence 566788775 44556666553335788899843 4443332221111 1122 1223489888743 55566778
Q ss_pred HHHHHHhccc
Q 018205 274 LKRCREAIAS 283 (359)
Q Consensus 274 L~~~~~~L~p 283 (359)
++++.. +++
T Consensus 75 ~~~l~~-l~~ 83 (275)
T PRK08507 75 LPKLLD-IKE 83 (275)
T ss_pred HHHHhc-cCC
Confidence 888887 877
No 487
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=61.00 E-value=15 Score=30.50 Aligned_cols=43 Identities=7% Similarity=0.187 Sum_probs=30.6
Q ss_pred ccEEEEcchhccCCc----------hHHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 018205 253 ADAFFFKAIFHAFVD----------EDCLKILKRCREAIASRGDRGKVIIIDIVINE 299 (359)
Q Consensus 253 ~D~i~~~~vl~~~~~----------~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~ 299 (359)
.|+|++++.|+++.. +...+++.++.++|+| +.++|.....|-
T Consensus 51 ~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~----~allIW~tt~Pv 103 (183)
T cd01842 51 LDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPI----ECLIVWNTAMPV 103 (183)
T ss_pred eeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCC----ccEEEEecCCCC
Confidence 699999999998864 2345677777777777 566666555553
No 488
>PF09824 ArsR: ArsR transcriptional regulator; InterPro: IPR014517 Members of this family of archaeal proteins are conserved transcriptional regulators belonging to the ArsR family.
Probab=60.91 E-value=6.4 Score=31.71 Aligned_cols=51 Identities=12% Similarity=0.101 Sum_probs=42.5
Q ss_pred HHHHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeee
Q 018205 28 SSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTA 86 (359)
Q Consensus 28 ~~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~ 86 (359)
..+++.....-.||+.|.+ +.+|.+||.+..|- +. .+-|.+|...|+++..
T Consensus 10 ll~~f~s~~~kkV~~~Ls~--~W~T~~El~e~~G~---d~---~~~L~~LkK~gLiE~q 60 (160)
T PF09824_consen 10 LLQTFNSEVYKKVYDELSK--GWMTEEELEEKYGK---DV---RESLLILKKGGLIESQ 60 (160)
T ss_pred HHHHhCCHHHHHHHHHHHh--ccCCHHHHHHHHCc---CH---HHHHHHHHHcCchhhc
Confidence 4456667788899999998 89999999999998 33 7888999999999743
No 489
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=60.90 E-value=12 Score=31.60 Aligned_cols=34 Identities=18% Similarity=0.248 Sum_probs=31.6
Q ss_pred CCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeee
Q 018205 50 PITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTA 86 (359)
Q Consensus 50 ~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~ 86 (359)
++|-++||+.+|+ ....+.|.|+.|...|+++..
T Consensus 149 ~~t~~~iA~~lG~---tretvsR~l~~l~~~g~I~~~ 182 (202)
T PRK13918 149 YATHDELAAAVGS---VRETVTKVIGELSREGYIRSG 182 (202)
T ss_pred cCCHHHHHHHhCc---cHHHHHHHHHHHHHCCCEEcC
Confidence 7899999999999 578999999999999999865
No 490
>TIGR02698 CopY_TcrY copper transport repressor, CopY/TcrY family. This family includes metal-fist type transcriptional repressors of copper transport systems such as copYZAB of Enterococcus hirae and tcrYAZB (transferble copper resistance) of an Enterocuccus faecium plasmid. High levels of copper can displace zinc and prevent binding by the repressor, activating efflux by copper resistance transporters. The most closely related proteins excluded by this model are antibiotic resistance regulators including the methicillin resistance regulatory protein MecI.
Probab=60.90 E-value=12 Score=29.42 Aligned_cols=47 Identities=19% Similarity=0.297 Sum_probs=34.8
Q ss_pred hcCcchhcccCCCCCCHHHHHHhc----CCCCCCcccHHHHHHHHHccCceeeec
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSAL----EINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~----~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
++.|...|=+. ++.|+.+|.+.+ ++ ....+..+|+-|...|+|+...
T Consensus 6 E~~VM~vlW~~-~~~t~~eI~~~l~~~~~~---~~tTv~T~L~rL~~KG~v~~~k 56 (130)
T TIGR02698 6 EWEVMRVVWTL-GETTSRDIIRILAEKKDW---SDSTIKTLLGRLVDKGCLTTEK 56 (130)
T ss_pred HHHHHHHHHcC-CCCCHHHHHHHHhhccCC---cHHHHHHHHHHHHHCCceeeec
Confidence 34444455332 689999977665 56 5678999999999999998764
No 491
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=60.48 E-value=31 Score=31.93 Aligned_cols=93 Identities=13% Similarity=0.207 Sum_probs=54.0
Q ss_pred CCCCeEEEeCCCc-chHHHHHHHH-CCCCeEEEeeccc-ccccCCCCCCceEeeCCCCCCCCCccEEEEcchhccCCchH
Q 018205 193 QGLGSLVDVGGGT-GSFARIISEA-FPGIKCTVLDLPH-VVPKVPDTDNLKFIAGDMFQSIPPADAFFFKAIFHAFVDED 269 (359)
Q Consensus 193 ~~~~~vlDvG~G~-G~~~~~l~~~-~p~~~~~~~D~~~-~~~~a~~~~~v~~~~~d~~~~~p~~D~i~~~~vl~~~~~~~ 269 (359)
....+||-+|||. |.++..++++ ....+++++|.++ -++.++..... ....+. ....++|+|+=.- ....
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~-~~~~~~-~~~~g~d~viD~~-----G~~~ 234 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADET-YLIDDI-PEDLAVDHAFECV-----GGRG 234 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCce-eehhhh-hhccCCcEEEECC-----CCCc
Confidence 4567899898764 5566666765 5556899999843 44444432211 111111 1112478877321 1111
Q ss_pred HHHHHHHHHHhcccCCCCcEEEEEee
Q 018205 270 CLKILKRCREAIASRGDRGKVIIIDI 295 (359)
Q Consensus 270 ~~~~L~~~~~~L~p~~~gG~lli~~~ 295 (359)
....++...++|++ +|+++++..
T Consensus 235 ~~~~~~~~~~~l~~---~G~iv~~G~ 257 (341)
T cd08237 235 SQSAINQIIDYIRP---QGTIGLMGV 257 (341)
T ss_pred cHHHHHHHHHhCcC---CcEEEEEee
Confidence 13478888899999 999988764
No 492
>PF05331 DUF742: Protein of unknown function (DUF742); InterPro: IPR007995 This family consists of several uncharacterised Streptomyces proteins as well as one from Mycobacterium tuberculosis. The function of these proteins is unknown.
Probab=60.10 E-value=10 Score=29.04 Aligned_cols=36 Identities=17% Similarity=0.333 Sum_probs=32.4
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
.+.|+.|||..+++ +...++-++.-|...|++....
T Consensus 54 ~~~SVAEiAA~L~l---PlgVvrVLvsDL~~~G~v~v~~ 89 (114)
T PF05331_consen 54 RPLSVAEIAARLGL---PLGVVRVLVSDLADAGLVRVRA 89 (114)
T ss_pred CCccHHHHHHhhCC---CchhhhhhHHHHHhCCCEEEeC
Confidence 49999999999999 6788899999999999998764
No 493
>PF14502 HTH_41: Helix-turn-helix domain
Probab=59.83 E-value=19 Score=22.83 Aligned_cols=35 Identities=9% Similarity=0.184 Sum_probs=30.7
Q ss_pred CCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 50 PITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 50 ~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
=.|++|+++++++ ..-.++.-|+.|.+.|-+..+.
T Consensus 6 i~tI~e~~~~~~v---s~GtiQ~Alk~Le~~gaI~Le~ 40 (48)
T PF14502_consen 6 IPTISEYSEKFGV---SRGTIQNALKFLEENGAIKLES 40 (48)
T ss_pred cCCHHHHHHHhCc---chhHHHHHHHHHHHCCcEEeee
Confidence 4699999999999 6788899999999999988664
No 494
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=59.73 E-value=16 Score=31.24 Aligned_cols=38 Identities=16% Similarity=0.151 Sum_probs=27.9
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-cccc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPK 232 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~ 232 (359)
.++..|||-=||+|+++.+..+. +.+++|+|+.+ .++.
T Consensus 190 ~~gdiVlDpF~GSGTT~~aa~~l--~R~~ig~E~~~~y~~~ 228 (231)
T PF01555_consen 190 NPGDIVLDPFAGSGTTAVAAEEL--GRRYIGIEIDEEYCEI 228 (231)
T ss_dssp -TT-EEEETT-TTTHHHHHHHHT--T-EEEEEESSHHHHHH
T ss_pred ccceeeehhhhccChHHHHHHHc--CCeEEEEeCCHHHHHH
Confidence 46789999999999999987776 67899999954 4443
No 495
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=59.05 E-value=51 Score=30.32 Aligned_cols=100 Identities=22% Similarity=0.172 Sum_probs=55.7
Q ss_pred CCCeEEEeCCCc-chHHHHHHHHCCCC-eEEEeeccc-cc-ccCC------C-CCCceEeeCCCCCCCCCccEEEEcchh
Q 018205 194 GLGSLVDVGGGT-GSFARIISEAFPGI-KCTVLDLPH-VV-PKVP------D-TDNLKFIAGDMFQSIPPADAFFFKAIF 262 (359)
Q Consensus 194 ~~~~vlDvG~G~-G~~~~~l~~~~p~~-~~~~~D~~~-~~-~~a~------~-~~~v~~~~~d~~~~~p~~D~i~~~~vl 262 (359)
.+.+|.=||+|. |......+...+-. ++..+|+.+ .+ ..+. . ..++.+..+|. +.+.++|+|++..-.
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~-~~~~~adivIitag~ 83 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDY-SDCKDADLVVITAGA 83 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCH-HHhCCCCEEEEecCC
Confidence 456899999987 55554444444333 699999843 21 1111 1 13455555554 456679998875544
Q ss_pred ccCC---chH----HHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 263 HAFV---DED----CLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 263 ~~~~---~~~----~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
-.-+ +.+ ...+++++.+.++..+|.+.++++.
T Consensus 84 ~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs 122 (315)
T PRK00066 84 PQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS 122 (315)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 2221 111 2345666555554323378888766
No 496
>PF09821 AAA_assoc_C: C-terminal AAA-associated domain; InterPro: IPR018632 Members of this family are found in various prokaryotic ABC transporters, predominantly involved in nitrate, sulphonate and bicarbonate translocation.
Probab=58.92 E-value=10 Score=29.35 Aligned_cols=75 Identities=19% Similarity=0.200 Sum_probs=52.6
Q ss_pred HHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccccccccCCCCChhhHHhhhcCcccccchhh
Q 018205 55 QLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFLKDKPYCLSPVVLTLTDQVFVNPCHF 134 (359)
Q Consensus 55 ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (359)
+||+.+++ +-+-|--+++++.-+|+++.. +|-..+|+.++.++..+....+.++.-.... ..+....
T Consensus 2 ~La~~l~~---eiDdL~p~~eAaelLgf~~~~---------~Gdi~LT~~G~~f~~a~~~~rK~if~~~l~~-~~Pl~~~ 68 (120)
T PF09821_consen 2 QLADELHL---EIDDLLPIVEAAELLGFAEVE---------EGDIRLTPLGRRFAEADIDERKEIFREQLLR-HVPLAAH 68 (120)
T ss_pred chHHHhCC---cHHHHHHHHHHHHHcCCeeec---------CCcEEeccchHHHHHCChHHHHHHHHHHHHh-cCCHHHH
Confidence 47888999 678889999999999999988 4899999999988866533444444432211 2333455
Q ss_pred hhHhhhcC
Q 018205 135 LSRWFRDN 142 (359)
Q Consensus 135 L~~~l~~~ 142 (359)
+...++..
T Consensus 69 I~~~L~~~ 76 (120)
T PF09821_consen 69 IRRVLRER 76 (120)
T ss_pred HHHHHHhC
Confidence 55566543
No 497
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=58.86 E-value=76 Score=25.78 Aligned_cols=62 Identities=16% Similarity=0.257 Sum_probs=37.8
Q ss_pred CCCeEEEeCCCcchH--HHHHHHHCCCCeEEEeecccccccCCCCCCceEeeCCCCC-CCCCccEEEE
Q 018205 194 GLGSLVDVGGGTGSF--ARIISEAFPGIKCTVLDLPHVVPKVPDTDNLKFIAGDMFQ-SIPPADAFFF 258 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~--~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~-~~p~~D~i~~ 258 (359)
.+.+||=||||.=.. +..|++. +.++++++. +..+.......+++....+.+ .+.++|+|++
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~--ga~V~VIsp-~~~~~l~~l~~i~~~~~~~~~~dl~~a~lVia 76 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDT--GAFVTVVSP-EICKEMKELPYITWKQKTFSNDDIKDAHLIYA 76 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEcC-ccCHHHHhccCcEEEecccChhcCCCceEEEE
Confidence 468999999986433 3344443 667888863 333322223456666666643 3556888887
No 498
>PTZ00117 malate dehydrogenase; Provisional
Probab=58.80 E-value=87 Score=28.83 Aligned_cols=66 Identities=17% Similarity=0.230 Sum_probs=39.0
Q ss_pred CCCeEEEeCCCc-chHHHHHHHHCCCCeEEEeecccccccCC--------C--CCCceEee-CCCCCCCCCccEEEEcc
Q 018205 194 GLGSLVDVGGGT-GSFARIISEAFPGIKCTVLDLPHVVPKVP--------D--TDNLKFIA-GDMFQSIPPADAFFFKA 260 (359)
Q Consensus 194 ~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~~~~~~~a~--------~--~~~v~~~~-~d~~~~~p~~D~i~~~~ 260 (359)
+..+|.=||+|+ |.....++....-..++.+|+.+-...+. . .....+.. .|. +.+.++|+|+...
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~-~~l~~ADiVVita 81 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNY-EDIKDSDVVVITA 81 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCH-HHhCCCCEEEECC
Confidence 346899999998 76665555544325799999954211121 1 11233332 444 3566799998765
No 499
>PRK13239 alkylmercury lyase; Provisional
Probab=58.75 E-value=7.2 Score=33.28 Aligned_cols=37 Identities=19% Similarity=0.425 Sum_probs=27.5
Q ss_pred cCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHH
Q 018205 38 LDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLV 78 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~ 78 (359)
.-|+..|++ |.|.|+++||+.+|+ +.+.++..|+.|.
T Consensus 25 ~~llr~la~-G~pvt~~~lA~~~~~---~~~~v~~~L~~l~ 61 (206)
T PRK13239 25 VPLLRLLAK-GRPVSVTTLAAALGW---PVEEVEAVLEAMP 61 (206)
T ss_pred HHHHHHHHc-CCCCCHHHHHHHhCC---CHHHHHHHHHhCC
Confidence 345566775 689999999999999 6766666666543
No 500
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=58.67 E-value=1.2e+02 Score=26.35 Aligned_cols=125 Identities=12% Similarity=0.111 Sum_probs=65.5
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHC--CCCeEEEeec--ccccccCCCCCCceEeeCCCCCCCCCccEEEEcchhccCCch
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAF--PGIKCTVLDL--PHVVPKVPDTDNLKFIAGDMFQSIPPADAFFFKAIFHAFVDE 268 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~--~~~~~~a~~~~~v~~~~~d~~~~~p~~D~i~~~~vl~~~~~~ 268 (359)
+....||-.||..|..+..|++.+ .+..++..-. +.|...+. ..++.....|. -.++
T Consensus 5 ~~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~-~~gl~~~kLDV------------------~~~~ 65 (289)
T KOG1209|consen 5 SQPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAI-QFGLKPYKLDV------------------SKPE 65 (289)
T ss_pred cCCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHH-hhCCeeEEecc------------------CChH
Confidence 456889999999999999998877 3556655543 12322221 12344444444 2446
Q ss_pred HHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcch----HHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCceeE
Q 018205 269 DCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDA----QLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFK 344 (359)
Q Consensus 269 ~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~ 344 (359)
++.++..+++.- | .|.+=+.-.........+ +.......++.+ .-|..+--.++...+.++-=+++.
T Consensus 66 ~V~~v~~evr~~--~---~Gkld~L~NNAG~~C~~Pa~d~~i~ave~~f~vN----vfG~irM~~a~~h~likaKGtIVn 136 (289)
T KOG1209|consen 66 EVVTVSGEVRAN--P---DGKLDLLYNNAGQSCTFPALDATIAAVEQCFKVN----VFGHIRMCRALSHFLIKAKGTIVN 136 (289)
T ss_pred HHHHHHHHHhhC--C---CCceEEEEcCCCCCcccccccCCHHHHHhhhccc----eeeeehHHHHHHHHHHHccceEEE
Confidence 667777777765 4 576655433322222111 011111122222 224455555666666666545554
Q ss_pred E
Q 018205 345 I 345 (359)
Q Consensus 345 ~ 345 (359)
+
T Consensus 137 v 137 (289)
T KOG1209|consen 137 V 137 (289)
T ss_pred e
Confidence 4
Done!