Query 018205
Match_columns 359
No_of_seqs 200 out of 2300
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 11:35:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018205.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018205hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a6d_A Hydroxyindole O-methylt 100.0 1.7E-52 5.7E-57 389.9 27.5 328 14-359 7-345 (353)
2 3p9c_A Caffeic acid O-methyltr 100.0 1.3E-50 4.3E-55 378.8 33.1 346 8-359 13-364 (364)
3 3reo_A (ISO)eugenol O-methyltr 100.0 1.9E-49 6.5E-54 371.5 31.2 342 11-359 17-366 (368)
4 3lst_A CALO1 methyltransferase 100.0 2E-49 6.8E-54 369.0 30.4 331 4-359 11-347 (348)
5 1fp2_A Isoflavone O-methyltran 100.0 3.8E-49 1.3E-53 367.8 30.0 346 4-359 5-352 (352)
6 3gwz_A MMCR; methyltransferase 100.0 1.4E-48 4.7E-53 366.0 26.7 327 8-359 31-368 (369)
7 1zg3_A Isoflavanone 4'-O-methy 100.0 3.5E-48 1.2E-52 362.1 29.2 349 10-359 5-358 (358)
8 1fp1_D Isoliquiritigenin 2'-O- 100.0 1.8E-47 6.1E-52 359.1 29.3 343 10-359 17-372 (372)
9 2ip2_A Probable phenazine-spec 100.0 7.4E-47 2.5E-51 350.0 29.2 318 14-359 7-333 (334)
10 3i53_A O-methyltransferase; CO 100.0 6E-48 2E-52 357.0 20.7 315 17-359 7-331 (332)
11 3dp7_A SAM-dependent methyltra 100.0 3.8E-45 1.3E-49 341.9 22.8 327 9-359 9-354 (363)
12 1qzz_A RDMB, aclacinomycin-10- 100.0 3.6E-44 1.2E-48 337.0 24.0 324 12-359 13-355 (374)
13 1tw3_A COMT, carminomycin 4-O- 100.0 2E-43 6.9E-48 330.2 26.3 320 16-359 20-355 (360)
14 2r3s_A Uncharacterized protein 100.0 4.4E-42 1.5E-46 318.1 26.4 314 17-358 8-333 (335)
15 3mcz_A O-methyltransferase; ad 100.0 1.3E-41 4.4E-46 317.0 27.3 311 15-359 24-348 (352)
16 1x19_A CRTF-related protein; m 100.0 2.8E-41 9.6E-46 315.5 28.8 311 10-359 25-358 (359)
17 4gek_A TRNA (CMO5U34)-methyltr 99.9 2E-20 6.7E-25 166.2 18.0 161 192-356 68-254 (261)
18 3dtn_A Putative methyltransfer 99.8 9.9E-19 3.4E-23 152.8 18.3 171 183-358 34-224 (234)
19 3dh0_A SAM dependent methyltra 99.7 3E-17 1E-21 141.8 15.3 154 182-358 27-191 (219)
20 3hnr_A Probable methyltransfer 99.7 3.4E-17 1.2E-21 141.5 15.0 169 182-358 35-210 (220)
21 3ou2_A SAM-dependent methyltra 99.7 4.3E-17 1.5E-21 140.5 14.2 161 182-349 35-206 (218)
22 3ujc_A Phosphoethanolamine N-m 99.7 2.8E-17 9.5E-22 146.1 13.1 155 182-349 45-207 (266)
23 3dlc_A Putative S-adenosyl-L-m 99.7 9E-18 3.1E-22 144.7 9.6 166 182-357 34-212 (219)
24 1ve3_A Hypothetical protein PH 99.7 6.3E-18 2.1E-22 146.8 7.6 160 194-359 38-226 (227)
25 3dli_A Methyltransferase; PSI- 99.7 8.7E-17 3E-21 141.0 14.9 141 192-349 39-185 (240)
26 1vl5_A Unknown conserved prote 99.7 5E-17 1.7E-21 144.3 13.4 152 182-348 27-190 (260)
27 3bus_A REBM, methyltransferase 99.7 1.6E-16 5.3E-21 142.0 16.0 156 182-349 51-217 (273)
28 3pfg_A N-methyltransferase; N, 99.7 6E-17 2E-21 144.0 10.4 162 192-358 48-247 (263)
29 1xxl_A YCGJ protein; structura 99.7 1.9E-16 6.3E-21 138.9 13.3 152 182-348 11-174 (239)
30 1kpg_A CFA synthase;, cyclopro 99.7 2.9E-16 9.9E-21 141.4 13.9 161 182-348 54-228 (287)
31 1xtp_A LMAJ004091AAA; SGPP, st 99.7 1.4E-16 4.8E-21 140.7 11.6 149 182-349 83-239 (254)
32 2o57_A Putative sarcosine dime 99.7 3.7E-16 1.3E-20 141.4 14.5 152 182-348 68-234 (297)
33 3bxo_A N,N-dimethyltransferase 99.7 1.4E-16 4.9E-21 139.3 11.3 162 193-359 39-238 (239)
34 3l8d_A Methyltransferase; stru 99.7 3.1E-16 1.1E-20 137.4 13.4 142 193-348 52-200 (242)
35 1nkv_A Hypothetical protein YJ 99.7 2.3E-16 8E-21 139.5 12.6 152 182-348 26-187 (256)
36 3h2b_A SAM-dependent methyltra 99.7 1.1E-16 3.7E-21 136.6 10.0 138 195-350 42-184 (203)
37 3mgg_A Methyltransferase; NYSG 99.7 3E-16 1E-20 140.5 12.5 152 192-348 35-198 (276)
38 4fsd_A Arsenic methyltransfera 99.7 4.4E-16 1.5E-20 146.1 13.7 145 193-348 82-251 (383)
39 3hem_A Cyclopropane-fatty-acyl 99.7 4.8E-16 1.6E-20 141.1 13.5 163 182-350 62-245 (302)
40 3e23_A Uncharacterized protein 99.7 2.2E-16 7.7E-21 135.5 10.7 138 192-348 41-182 (211)
41 3g2m_A PCZA361.24; SAM-depende 99.7 1.9E-16 6.6E-21 143.5 10.5 169 182-358 73-290 (299)
42 3ege_A Putative methyltransfer 99.7 4.8E-16 1.6E-20 138.1 12.3 151 182-348 24-178 (261)
43 2qe6_A Uncharacterized protein 99.7 1.4E-15 4.7E-20 136.0 15.3 140 194-344 77-238 (274)
44 2fk8_A Methoxy mycolic acid sy 99.7 5.7E-16 1.9E-20 141.6 13.1 161 182-348 80-254 (318)
45 3lcc_A Putative methyl chlorid 99.7 1.6E-16 5.6E-21 138.8 9.0 132 195-349 67-208 (235)
46 3f4k_A Putative methyltransfer 99.7 7.8E-16 2.7E-20 136.1 13.3 151 183-349 36-197 (257)
47 1pjz_A Thiopurine S-methyltran 99.7 1.9E-16 6.4E-21 135.4 8.9 134 192-348 20-176 (203)
48 2p7i_A Hypothetical protein; p 99.7 3.9E-16 1.3E-20 137.1 11.1 144 193-348 41-199 (250)
49 3vc1_A Geranyl diphosphate 2-C 99.7 1.4E-15 4.8E-20 138.7 15.1 154 182-349 106-270 (312)
50 3ocj_A Putative exported prote 99.7 4.4E-16 1.5E-20 141.6 11.3 164 192-358 116-302 (305)
51 3kkz_A Uncharacterized protein 99.6 6.9E-16 2.4E-20 137.5 12.0 150 184-349 37-197 (267)
52 3ccf_A Cyclopropane-fatty-acyl 99.6 1.3E-15 4.6E-20 136.5 13.7 153 182-348 47-210 (279)
53 3i9f_A Putative type 11 methyl 99.6 2.6E-16 8.8E-21 130.4 7.9 146 184-357 9-157 (170)
54 3sm3_A SAM-dependent methyltra 99.6 1.6E-15 5.5E-20 132.1 13.1 148 193-348 29-207 (235)
55 2qm3_A Predicted methyltransfe 99.6 2.7E-15 9.1E-20 140.1 15.4 215 39-297 47-280 (373)
56 3g5l_A Putative S-adenosylmeth 99.6 3.9E-16 1.3E-20 137.9 9.1 157 183-348 35-216 (253)
57 2ex4_A Adrenal gland protein A 99.6 5E-16 1.7E-20 136.2 9.5 138 194-349 79-226 (241)
58 3gu3_A Methyltransferase; alph 99.6 1.3E-15 4.5E-20 137.0 11.9 152 192-348 20-190 (284)
59 3g07_A 7SK snRNA methylphospha 99.6 9.3E-17 3.2E-21 145.1 4.3 155 184-348 36-269 (292)
60 3jwh_A HEN1; methyltransferase 99.6 3.5E-16 1.2E-20 135.0 7.6 141 193-344 28-188 (217)
61 2p35_A Trans-aconitate 2-methy 99.6 1.3E-15 4.5E-20 134.8 11.5 155 182-343 23-185 (259)
62 3jwg_A HEN1, methyltransferase 99.6 9.8E-16 3.3E-20 132.3 10.0 143 193-345 28-189 (219)
63 3cgg_A SAM-dependent methyltra 99.6 1.1E-14 3.7E-19 122.9 15.8 133 182-348 37-175 (195)
64 4htf_A S-adenosylmethionine-de 99.6 1.1E-15 3.7E-20 137.5 9.8 155 183-350 60-234 (285)
65 3bkw_A MLL3908 protein, S-aden 99.6 6.5E-15 2.2E-19 129.0 14.0 159 182-348 33-214 (243)
66 3bkx_A SAM-dependent methyltra 99.6 5.5E-15 1.9E-19 132.1 13.8 159 182-348 33-219 (275)
67 3e8s_A Putative SAM dependent 99.6 8.4E-16 2.9E-20 133.0 6.9 154 182-348 42-209 (227)
68 1y8c_A S-adenosylmethionine-de 99.6 4.7E-15 1.6E-19 130.0 11.5 150 194-348 37-225 (246)
69 2yqz_A Hypothetical protein TT 99.6 1E-14 3.6E-19 129.2 12.9 146 192-347 37-195 (263)
70 1vlm_A SAM-dependent methyltra 99.6 9E-15 3.1E-19 126.3 11.9 137 195-348 48-188 (219)
71 2xvm_A Tellurite resistance pr 99.6 1.7E-14 5.7E-19 122.3 13.2 143 182-348 22-173 (199)
72 3ggd_A SAM-dependent methyltra 99.6 7.2E-15 2.4E-19 129.1 10.6 150 192-348 54-219 (245)
73 3d2l_A SAM-dependent methyltra 99.6 1.7E-14 5.7E-19 126.4 12.4 95 193-293 32-136 (243)
74 4hg2_A Methyltransferase type 99.6 1E-14 3.5E-19 128.9 10.8 99 193-299 38-140 (257)
75 3cc8_A Putative methyltransfer 99.6 2E-14 6.9E-19 124.5 12.5 152 182-349 23-186 (230)
76 2aot_A HMT, histamine N-methyl 99.6 1.4E-14 4.7E-19 130.8 11.0 142 194-345 52-218 (292)
77 2gb4_A Thiopurine S-methyltran 99.6 1.2E-14 4E-19 128.2 10.3 133 193-348 67-227 (252)
78 2zfu_A Nucleomethylin, cerebra 99.6 6.4E-14 2.2E-18 120.4 14.5 130 183-358 57-189 (215)
79 4e2x_A TCAB9; kijanose, tetron 99.5 3.8E-14 1.3E-18 134.4 11.4 149 182-349 97-254 (416)
80 3g5t_A Trans-aconitate 3-methy 99.5 4.2E-14 1.4E-18 128.1 10.9 98 193-296 35-151 (299)
81 2i62_A Nicotinamide N-methyltr 99.5 2.7E-14 9.3E-19 126.7 9.4 140 193-349 55-240 (265)
82 2a14_A Indolethylamine N-methy 99.5 9.1E-15 3.1E-19 130.0 4.9 140 193-349 54-239 (263)
83 3q87_B N6 adenine specific DNA 99.5 3.7E-13 1.3E-17 111.4 14.1 127 193-357 22-159 (170)
84 3grz_A L11 mtase, ribosomal pr 99.5 1E-13 3.5E-18 118.3 10.6 130 193-359 59-196 (205)
85 2p8j_A S-adenosylmethionine-de 99.5 3.6E-14 1.2E-18 121.3 7.1 150 193-346 22-181 (209)
86 3m70_A Tellurite resistance pr 99.5 1.9E-13 6.6E-18 122.8 12.2 141 182-346 110-258 (286)
87 3thr_A Glycine N-methyltransfe 99.5 1.7E-14 5.7E-19 130.2 5.2 108 182-296 47-177 (293)
88 1ri5_A MRNA capping enzyme; me 99.5 7.3E-14 2.5E-18 126.1 8.1 153 193-349 63-251 (298)
89 1wzn_A SAM-dependent methyltra 99.5 1.4E-12 4.8E-17 114.8 16.2 104 183-293 32-144 (252)
90 2g72_A Phenylethanolamine N-me 99.5 3.2E-14 1.1E-18 128.2 5.5 139 194-349 71-257 (289)
91 3mq2_A 16S rRNA methyltransfer 99.5 1.8E-13 6.1E-18 117.9 9.4 149 183-348 18-184 (218)
92 3e05_A Precorrin-6Y C5,15-meth 99.4 1.1E-12 3.7E-17 111.8 13.7 120 183-340 31-160 (204)
93 2gs9_A Hypothetical protein TT 99.4 2.6E-13 9E-18 116.2 9.6 143 183-347 28-177 (211)
94 3giw_A Protein of unknown func 99.4 7E-13 2.4E-17 116.7 11.1 141 194-344 78-243 (277)
95 1fbn_A MJ fibrillarin homologu 99.4 3.1E-12 1E-16 111.2 14.7 140 192-358 72-226 (230)
96 2kw5_A SLR1183 protein; struct 99.4 6.9E-13 2.3E-17 112.8 10.2 131 197-348 32-171 (202)
97 2b3t_A Protein methyltransfera 99.4 1.7E-12 5.7E-17 116.1 12.8 134 193-358 108-274 (276)
98 3p2e_A 16S rRNA methylase; met 99.4 5.6E-13 1.9E-17 115.5 9.3 145 193-349 23-186 (225)
99 3ofk_A Nodulation protein S; N 99.4 4.9E-13 1.7E-17 114.9 8.3 100 192-296 49-156 (216)
100 3htx_A HEN1; HEN1, small RNA m 99.4 7.6E-13 2.6E-17 131.0 9.7 101 193-297 720-837 (950)
101 2vdw_A Vaccinia virus capping 99.4 1.8E-12 6.3E-17 117.2 10.5 151 194-348 48-246 (302)
102 1af7_A Chemotaxis receptor met 99.4 4E-13 1.4E-17 119.4 5.8 96 194-292 105-250 (274)
103 1nt2_A Fibrillarin-like PRE-rR 99.4 6.5E-12 2.2E-16 107.6 12.4 136 192-358 55-208 (210)
104 1dus_A MJ0882; hypothetical pr 99.3 8.1E-12 2.8E-16 104.9 12.6 140 182-358 42-192 (194)
105 3iv6_A Putative Zn-dependent a 99.3 1.1E-12 3.8E-17 115.5 7.5 107 182-296 35-150 (261)
106 3uwp_A Histone-lysine N-methyl 99.3 1E-12 3.6E-17 121.3 7.1 112 182-301 163-295 (438)
107 3hm2_A Precorrin-6Y C5,15-meth 99.3 1.8E-12 6.1E-17 107.7 7.9 101 183-295 16-128 (178)
108 4dzr_A Protein-(glutamine-N5) 99.3 6.7E-13 2.3E-17 113.6 4.7 143 183-357 20-202 (215)
109 2pxx_A Uncharacterized protein 99.3 3E-12 1E-16 109.5 8.9 102 192-297 40-162 (215)
110 2avn_A Ubiquinone/menaquinone 99.3 5.1E-13 1.8E-17 118.3 3.5 148 194-350 54-215 (260)
111 2nxc_A L11 mtase, ribosomal pr 99.3 6.8E-12 2.3E-16 110.7 10.2 125 193-355 119-251 (254)
112 4df3_A Fibrillarin-like rRNA/T 99.3 1.8E-11 6.3E-16 105.6 11.6 141 192-358 75-230 (233)
113 2ipx_A RRNA 2'-O-methyltransfe 99.3 8.9E-12 3E-16 108.4 9.7 133 192-350 75-219 (233)
114 2h00_A Methyltransferase 10 do 99.3 4.6E-13 1.6E-17 118.2 1.4 144 194-348 65-238 (254)
115 3njr_A Precorrin-6Y methylase; 99.3 2.1E-11 7.4E-16 103.8 11.7 123 183-347 46-179 (204)
116 3orh_A Guanidinoacetate N-meth 99.3 1.3E-12 4.5E-17 114.0 4.1 133 193-345 59-207 (236)
117 1xdz_A Methyltransferase GIDB; 99.3 5.4E-12 1.9E-16 110.4 7.6 121 193-348 69-202 (240)
118 3mti_A RRNA methylase; SAM-dep 99.3 1.1E-11 3.6E-16 103.8 9.1 132 192-348 20-169 (185)
119 3kr9_A SAM-dependent methyltra 99.3 1.2E-11 4.1E-16 106.2 9.3 129 193-358 14-156 (225)
120 3evz_A Methyltransferase; NYSG 99.3 2.1E-11 7.1E-16 105.7 11.0 128 192-350 53-208 (230)
121 3bgv_A MRNA CAP guanine-N7 met 99.3 1.3E-11 4.3E-16 112.4 10.1 156 183-348 23-232 (313)
122 1yzh_A TRNA (guanine-N(7)-)-me 99.3 2.4E-11 8.3E-16 104.2 11.3 98 194-294 41-156 (214)
123 1yb2_A Hypothetical protein TA 99.3 6.4E-12 2.2E-16 112.3 7.8 125 183-347 101-236 (275)
124 3m33_A Uncharacterized protein 99.3 2.5E-12 8.4E-17 111.5 4.9 114 193-348 47-167 (226)
125 3fzg_A 16S rRNA methylase; met 99.3 6.9E-12 2.4E-16 103.6 7.1 134 193-353 48-192 (200)
126 1zx0_A Guanidinoacetate N-meth 99.3 3E-12 1E-16 111.7 4.7 100 193-296 59-172 (236)
127 4dcm_A Ribosomal RNA large sub 99.2 1.4E-11 4.8E-16 114.7 9.4 107 183-294 213-334 (375)
128 3eey_A Putative rRNA methylase 99.2 7.9E-12 2.7E-16 105.7 6.7 134 192-348 20-173 (197)
129 3mb5_A SAM-dependent methyltra 99.2 1.6E-11 5.4E-16 108.3 8.9 126 183-348 84-222 (255)
130 3lec_A NADB-rossmann superfami 99.2 2.6E-11 8.9E-16 104.3 9.7 129 193-358 20-162 (230)
131 3hp7_A Hemolysin, putative; st 99.2 2.8E-11 9.5E-16 107.9 10.0 150 182-349 74-233 (291)
132 2pjd_A Ribosomal RNA small sub 99.2 6.7E-12 2.3E-16 115.7 6.2 110 182-296 186-305 (343)
133 3g89_A Ribosomal RNA small sub 99.2 9.8E-12 3.4E-16 109.3 6.9 121 193-348 79-212 (249)
134 1g8a_A Fibrillarin-like PRE-rR 99.2 1.2E-10 4E-15 100.8 13.6 140 192-358 71-225 (227)
135 2plw_A Ribosomal RNA methyltra 99.2 1.2E-10 4.2E-15 98.6 12.8 104 183-294 12-154 (201)
136 3bwc_A Spermidine synthase; SA 99.2 2.4E-11 8.2E-16 110.0 8.8 129 193-348 94-240 (304)
137 3fpf_A Mtnas, putative unchara 99.2 2.6E-11 8.8E-16 108.0 8.8 95 192-294 120-222 (298)
138 1ej0_A FTSJ; methyltransferase 99.2 1E-10 3.5E-15 96.5 11.9 106 183-296 12-138 (180)
139 1l3i_A Precorrin-6Y methyltran 99.2 1.8E-11 6.2E-16 102.6 7.3 120 183-342 24-154 (192)
140 2yxd_A Probable cobalt-precorr 99.2 3.7E-11 1.3E-15 99.9 8.8 120 183-345 26-154 (183)
141 3lpm_A Putative methyltransfer 99.2 9.8E-11 3.4E-15 103.5 11.7 124 192-348 46-201 (259)
142 3id6_C Fibrillarin-like rRNA/T 99.2 1E-10 3.5E-15 101.2 11.2 141 192-358 74-229 (232)
143 2y1w_A Histone-arginine methyl 99.2 1.5E-11 5.1E-16 113.6 6.2 107 182-294 40-155 (348)
144 3gnl_A Uncharacterized protein 99.2 4.6E-11 1.6E-15 103.5 8.8 129 193-358 20-162 (244)
145 3dxy_A TRNA (guanine-N(7)-)-me 99.2 1.7E-11 6E-16 105.5 5.7 98 194-294 34-150 (218)
146 2frn_A Hypothetical protein PH 99.2 1.2E-10 4E-15 104.2 11.1 120 193-344 124-253 (278)
147 2fca_A TRNA (guanine-N(7)-)-me 99.2 5.6E-11 1.9E-15 101.9 8.7 98 194-294 38-153 (213)
148 2pwy_A TRNA (adenine-N(1)-)-me 99.2 5.5E-11 1.9E-15 104.8 8.4 126 183-348 87-224 (258)
149 3opn_A Putative hemolysin; str 99.2 7.1E-11 2.4E-15 102.6 8.3 147 182-348 26-184 (232)
150 3b3j_A Histone-arginine methyl 99.1 2.9E-11 9.9E-16 116.0 5.9 105 182-292 148-261 (480)
151 1u2z_A Histone-lysine N-methyl 99.1 1.1E-10 3.6E-15 109.9 9.1 111 182-300 232-365 (433)
152 1o54_A SAM-dependent O-methylt 99.1 8E-11 2.7E-15 105.2 7.8 126 183-348 103-239 (277)
153 2bm8_A Cephalosporin hydroxyla 99.1 2.5E-10 8.7E-15 99.4 10.4 94 194-295 81-188 (236)
154 1o9g_A RRNA methyltransferase; 99.1 7E-11 2.4E-15 103.9 6.8 100 194-296 51-216 (250)
155 3ckk_A TRNA (guanine-N(7)-)-me 99.1 8.3E-11 2.8E-15 102.4 7.1 99 193-294 45-168 (235)
156 2ld4_A Anamorsin; methyltransf 99.1 8.7E-11 3E-15 97.5 6.8 114 192-347 10-133 (176)
157 2fyt_A Protein arginine N-meth 99.1 1.6E-10 5.6E-15 106.2 9.2 103 183-291 55-168 (340)
158 3q7e_A Protein arginine N-meth 99.1 7E-11 2.4E-15 109.1 6.7 96 193-292 65-171 (349)
159 3lbf_A Protein-L-isoaspartate 99.1 1.7E-10 5.9E-15 98.4 8.1 99 183-296 68-176 (210)
160 3r0q_C Probable protein argini 99.1 1.2E-10 4E-15 108.7 7.3 101 192-296 61-171 (376)
161 2yxe_A Protein-L-isoaspartate 99.1 1.9E-10 6.4E-15 98.6 8.0 100 183-295 68-178 (215)
162 3dou_A Ribosomal RNA large sub 99.1 6.6E-10 2.3E-14 93.5 11.1 103 182-294 14-139 (191)
163 1jsx_A Glucose-inhibited divis 99.1 1.1E-10 3.9E-15 99.3 6.5 91 194-293 65-164 (207)
164 2oxt_A Nucleoside-2'-O-methylt 99.1 7.1E-10 2.4E-14 98.1 11.4 96 192-294 72-185 (265)
165 2ozv_A Hypothetical protein AT 99.1 1.7E-10 5.7E-15 102.1 7.4 99 192-293 34-169 (260)
166 3p9n_A Possible methyltransfer 99.1 2.7E-10 9.3E-15 95.6 8.1 100 193-297 43-156 (189)
167 3lcv_B Sisomicin-gentamicin re 99.1 3.7E-10 1.3E-14 97.6 9.0 136 193-351 131-274 (281)
168 3tfw_A Putative O-methyltransf 99.1 8.6E-11 2.9E-15 103.2 5.1 98 193-298 62-174 (248)
169 3dmg_A Probable ribosomal RNA 99.1 3.6E-10 1.2E-14 105.2 9.2 96 194-294 233-340 (381)
170 2nyu_A Putative ribosomal RNA 99.1 9.8E-10 3.4E-14 92.5 11.0 104 184-295 13-146 (196)
171 3sso_A Methyltransferase; macr 99.1 2.2E-10 7.4E-15 105.6 7.3 95 193-296 215-326 (419)
172 3bzb_A Uncharacterized protein 99.1 5.8E-10 2E-14 99.8 10.0 97 193-293 78-204 (281)
173 3r3h_A O-methyltransferase, SA 99.1 1.9E-10 6.3E-15 100.7 6.6 98 193-298 59-174 (242)
174 2wa2_A Non-structural protein 99.1 7.2E-10 2.5E-14 98.6 10.5 96 192-294 80-193 (276)
175 3ntv_A MW1564 protein; rossman 99.1 6.6E-11 2.3E-15 102.9 3.7 97 193-297 70-179 (232)
176 1vbf_A 231AA long hypothetical 99.0 3.6E-10 1.2E-14 97.9 8.1 99 183-296 61-167 (231)
177 3adn_A Spermidine synthase; am 99.0 2.2E-10 7.5E-15 103.0 6.7 99 193-294 82-198 (294)
178 1nv8_A HEMK protein; class I a 99.0 2.9E-10 9.9E-15 101.8 7.1 94 194-292 123-247 (284)
179 2vdv_E TRNA (guanine-N(7)-)-me 99.0 1.8E-10 6E-15 101.1 5.6 94 193-294 48-173 (246)
180 3duw_A OMT, O-methyltransferas 99.0 1.2E-10 4.1E-15 100.4 4.2 97 193-297 57-170 (223)
181 1p91_A Ribosomal RNA large sub 99.0 4.1E-10 1.4E-14 100.0 7.6 93 193-297 84-181 (269)
182 1g6q_1 HnRNP arginine N-methyl 99.0 3.7E-10 1.3E-14 103.4 7.4 96 193-292 37-143 (328)
183 3gjy_A Spermidine synthase; AP 99.0 3E-10 1E-14 102.4 6.6 98 195-295 90-201 (317)
184 2gpy_A O-methyltransferase; st 99.0 1.9E-10 6.4E-15 100.0 5.1 96 193-296 53-162 (233)
185 1jg1_A PIMT;, protein-L-isoasp 99.0 4.4E-10 1.5E-14 97.8 7.0 100 182-295 81-190 (235)
186 1dl5_A Protein-L-isoaspartate 99.0 6E-10 2.1E-14 101.5 8.1 100 183-295 66-176 (317)
187 3tr6_A O-methyltransferase; ce 99.0 2E-10 6.7E-15 99.2 4.6 98 193-298 63-178 (225)
188 1ws6_A Methyltransferase; stru 99.0 2E-10 6.9E-15 94.4 4.2 95 194-297 41-150 (171)
189 3u81_A Catechol O-methyltransf 99.0 2.1E-10 7.2E-15 98.9 4.4 98 193-296 57-172 (221)
190 2b25_A Hypothetical protein; s 99.0 2.6E-10 9E-15 104.7 5.3 101 183-295 96-220 (336)
191 4hc4_A Protein arginine N-meth 99.0 7.5E-10 2.6E-14 102.4 7.9 95 194-292 83-187 (376)
192 3frh_A 16S rRNA methylase; met 99.0 1.8E-09 6.3E-14 92.4 9.6 134 193-353 104-246 (253)
193 2ift_A Putative methylase HI07 99.0 2E-10 6.9E-15 97.5 3.1 98 194-298 53-167 (201)
194 2p41_A Type II methyltransfera 98.9 2.1E-09 7.3E-14 97.0 9.2 95 192-292 80-189 (305)
195 2esr_A Methyltransferase; stru 98.9 7E-10 2.4E-14 91.9 5.5 107 183-297 21-141 (177)
196 4azs_A Methyltransferase WBDD; 98.9 2.7E-10 9.2E-15 112.0 3.5 103 193-300 65-179 (569)
197 3c3p_A Methyltransferase; NP_9 98.9 2.3E-10 8E-15 97.7 1.9 96 194-297 56-163 (210)
198 2pbf_A Protein-L-isoaspartate 98.9 3.3E-09 1.1E-13 91.6 9.2 94 192-296 78-195 (227)
199 1ixk_A Methyltransferase; open 98.9 3.4E-09 1.2E-13 96.3 9.6 104 192-298 116-250 (315)
200 2fhp_A Methylase, putative; al 98.9 9E-10 3.1E-14 91.9 5.0 98 193-297 43-157 (187)
201 2hnk_A SAM-dependent O-methylt 98.9 4.8E-10 1.7E-14 97.8 3.3 97 193-297 59-184 (239)
202 1r18_A Protein-L-isoaspartate( 98.9 9.6E-10 3.3E-14 95.1 5.1 92 192-294 82-194 (227)
203 3dr5_A Putative O-methyltransf 98.9 4E-10 1.4E-14 97.1 2.6 93 196-296 58-165 (221)
204 1sui_A Caffeoyl-COA O-methyltr 98.9 1E-09 3.4E-14 96.3 4.9 97 193-297 78-193 (247)
205 1i9g_A Hypothetical protein RV 98.9 3.1E-09 1.1E-13 94.8 7.9 102 183-296 90-205 (280)
206 2yvl_A TRMI protein, hypotheti 98.9 5.1E-09 1.7E-13 91.5 8.9 100 183-296 82-192 (248)
207 1i1n_A Protein-L-isoaspartate 98.9 3.5E-09 1.2E-13 91.3 7.4 93 192-295 75-183 (226)
208 1iy9_A Spermidine synthase; ro 98.9 1.2E-09 4.2E-14 97.3 4.4 97 194-293 75-188 (275)
209 1xj5_A Spermidine synthase 1; 98.9 1.3E-09 4.6E-14 99.5 4.7 98 193-293 119-234 (334)
210 2avd_A Catechol-O-methyltransf 98.9 1.2E-09 4E-14 94.5 4.1 97 193-297 68-182 (229)
211 2i7c_A Spermidine synthase; tr 98.9 1.5E-09 5.3E-14 97.1 4.9 98 193-293 77-191 (283)
212 3tma_A Methyltransferase; thum 98.8 6.5E-09 2.2E-13 96.1 9.1 107 183-294 194-317 (354)
213 1mjf_A Spermidine synthase; sp 98.8 1.4E-09 4.9E-14 97.2 4.5 98 193-294 74-193 (281)
214 1zq9_A Probable dimethyladenos 98.8 1.4E-09 4.8E-14 97.4 4.1 101 182-290 18-143 (285)
215 1uir_A Polyamine aminopropyltr 98.8 1.8E-09 6.3E-14 98.0 4.9 99 193-294 76-195 (314)
216 2pt6_A Spermidine synthase; tr 98.8 1.3E-09 4.4E-14 99.3 3.8 96 194-293 116-229 (321)
217 2fpo_A Methylase YHHF; structu 98.8 3.6E-09 1.2E-13 89.8 6.2 96 194-296 54-162 (202)
218 2o07_A Spermidine synthase; st 98.8 1.6E-09 5.5E-14 97.8 4.3 99 193-294 94-209 (304)
219 2xyq_A Putative 2'-O-methyl tr 98.8 2E-08 6.9E-13 89.6 11.1 116 192-346 61-195 (290)
220 2b2c_A Spermidine synthase; be 98.8 2.4E-09 8.1E-14 97.1 5.2 99 193-294 107-222 (314)
221 3cbg_A O-methyltransferase; cy 98.8 1.3E-09 4.3E-14 94.7 3.2 96 194-297 72-185 (232)
222 3c3y_A Pfomt, O-methyltransfer 98.8 2.6E-09 8.9E-14 93.1 4.8 95 193-295 69-182 (237)
223 3a27_A TYW2, uncharacterized p 98.8 4.6E-09 1.6E-13 93.4 6.1 99 192-299 117-224 (272)
224 2cmg_A Spermidine synthase; tr 98.8 7.2E-09 2.5E-13 91.5 7.2 89 193-293 71-170 (262)
225 1wy7_A Hypothetical protein PH 98.8 1.6E-08 5.5E-13 85.8 9.1 88 193-281 48-141 (207)
226 2ih2_A Modification methylase 98.8 3.3E-08 1.1E-12 93.4 11.9 105 183-295 30-165 (421)
227 1ne2_A Hypothetical protein TA 98.8 5.5E-09 1.9E-13 88.4 5.8 88 193-281 50-139 (200)
228 3gdh_A Trimethylguanosine synt 98.8 1E-10 3.5E-15 102.1 -5.3 135 194-351 78-222 (241)
229 2yxl_A PH0851 protein, 450AA l 98.8 3.1E-08 1.1E-12 94.4 10.9 104 192-298 257-393 (450)
230 1inl_A Spermidine synthase; be 98.8 2.4E-09 8.1E-14 96.5 2.7 97 194-293 90-204 (296)
231 3tm4_A TRNA (guanine N2-)-meth 98.7 1.9E-08 6.5E-13 93.6 8.5 120 193-348 216-352 (373)
232 2igt_A SAM dependent methyltra 98.7 3.5E-08 1.2E-12 90.1 9.1 96 194-296 153-274 (332)
233 3ajd_A Putative methyltransfer 98.7 2.5E-08 8.5E-13 88.8 6.9 105 192-299 81-216 (274)
234 3k6r_A Putative transferase PH 98.7 5E-08 1.7E-12 86.5 8.6 120 192-343 123-252 (278)
235 2h1r_A Dimethyladenosine trans 98.7 2E-08 6.7E-13 90.6 5.8 97 182-283 32-151 (299)
236 1yub_A Ermam, rRNA methyltrans 98.6 3.3E-08 1.1E-12 86.4 6.1 104 182-294 19-145 (245)
237 2f8l_A Hypothetical protein LM 98.6 2.3E-08 7.8E-13 92.0 5.2 99 194-295 130-257 (344)
238 3b5i_A S-adenosyl-L-methionine 98.6 1.2E-06 4.1E-11 80.8 15.7 152 194-348 52-298 (374)
239 1sqg_A SUN protein, FMU protei 98.6 1.4E-07 4.9E-12 89.3 9.9 104 192-298 244-378 (429)
240 2b78_A Hypothetical protein SM 98.5 2.9E-08 9.9E-13 92.7 3.5 98 193-294 211-331 (385)
241 1qam_A ERMC' methyltransferase 98.5 1.1E-07 3.6E-12 83.2 6.6 80 182-265 20-106 (244)
242 3m6w_A RRNA methylase; rRNA me 98.5 1.1E-07 3.7E-12 90.3 6.2 103 192-298 99-233 (464)
243 1uwv_A 23S rRNA (uracil-5-)-me 98.5 1.7E-06 5.7E-11 82.0 13.3 97 183-292 277-387 (433)
244 3c0k_A UPF0064 protein YCCW; P 98.5 1.2E-07 4.2E-12 88.8 5.4 97 194-294 220-339 (396)
245 2frx_A Hypothetical protein YE 98.5 6.1E-07 2.1E-11 85.8 10.2 103 194-299 117-251 (479)
246 3gru_A Dimethyladenosine trans 98.4 3E-07 1E-11 82.2 7.1 76 182-261 40-123 (295)
247 2yx1_A Hypothetical protein MJ 98.4 1.8E-07 6.3E-12 85.6 5.7 94 193-298 194-295 (336)
248 3m4x_A NOL1/NOP2/SUN family pr 98.4 2.8E-07 9.4E-12 87.4 6.8 104 192-298 103-238 (456)
249 2as0_A Hypothetical protein PH 98.4 1.6E-07 5.5E-12 88.1 3.9 99 194-296 217-337 (396)
250 1wxx_A TT1595, hypothetical pr 98.4 1.4E-07 4.9E-12 87.9 3.4 98 194-296 209-327 (382)
251 2efj_A 3,7-dimethylxanthine me 98.4 5.3E-06 1.8E-10 76.6 13.6 150 195-347 53-291 (384)
252 3k0b_A Predicted N6-adenine-sp 98.3 7.2E-07 2.5E-11 83.3 7.7 110 183-295 192-351 (393)
253 4gqb_A Protein arginine N-meth 98.3 4.9E-07 1.7E-11 88.5 6.2 127 155-290 322-463 (637)
254 4dmg_A Putative uncharacterize 98.3 5.6E-07 1.9E-11 84.0 6.2 100 193-297 213-329 (393)
255 3ldg_A Putative uncharacterize 98.3 2.1E-06 7.1E-11 79.8 9.6 110 183-295 185-344 (384)
256 3ftd_A Dimethyladenosine trans 98.3 7.1E-07 2.4E-11 78.0 6.1 84 182-268 21-110 (249)
257 1m6e_X S-adenosyl-L-methionnin 98.3 8.3E-06 2.8E-10 74.6 13.4 151 193-346 50-278 (359)
258 2okc_A Type I restriction enzy 98.3 5.1E-07 1.7E-11 86.0 5.5 100 193-295 170-308 (445)
259 3evf_A RNA-directed RNA polyme 98.3 3.7E-06 1.3E-10 73.2 9.9 111 182-298 64-187 (277)
260 3fut_A Dimethyladenosine trans 98.3 1.4E-06 4.8E-11 77.0 7.4 89 182-276 37-133 (271)
261 2jjq_A Uncharacterized RNA met 98.2 2.9E-06 9.9E-11 80.0 9.3 90 193-293 289-386 (425)
262 2k4m_A TR8_protein, UPF0146 pr 98.2 8E-06 2.7E-10 63.9 9.8 84 193-296 34-123 (153)
263 3ldu_A Putative methylase; str 98.2 1.3E-06 4.6E-11 81.3 6.1 110 183-295 186-345 (385)
264 3v97_A Ribosomal RNA large sub 98.2 1.6E-06 5.6E-11 86.8 6.7 97 194-294 539-657 (703)
265 1m6y_A S-adenosyl-methyltransf 98.2 1.1E-06 3.7E-11 78.9 4.7 77 182-260 16-106 (301)
266 3o4f_A Spermidine synthase; am 98.2 2.8E-06 9.6E-11 75.4 7.2 98 193-294 82-198 (294)
267 3uzu_A Ribosomal RNA small sub 98.2 3.9E-07 1.3E-11 81.0 1.7 65 182-248 32-101 (279)
268 2qfm_A Spermine synthase; sper 98.2 1.1E-06 3.6E-11 80.3 4.2 98 193-294 187-314 (364)
269 3tqs_A Ribosomal RNA small sub 98.1 1.9E-06 6.6E-11 75.5 4.9 63 182-248 19-86 (255)
270 3ua3_A Protein arginine N-meth 98.1 1.6E-06 5.4E-11 85.0 3.7 127 155-291 377-531 (745)
271 3gcz_A Polyprotein; flavivirus 98.1 8.1E-06 2.8E-10 71.2 7.7 109 182-297 80-203 (282)
272 1rjd_A PPM1P, carboxy methyl t 98.0 4.4E-05 1.5E-09 69.5 11.3 142 194-341 97-281 (334)
273 2qy6_A UPF0209 protein YFCK; s 98.0 5.7E-06 1.9E-10 72.5 5.2 128 194-357 60-244 (257)
274 2r6z_A UPF0341 protein in RSP 98.0 5E-06 1.7E-10 73.0 4.8 71 192-264 81-173 (258)
275 1qyr_A KSGA, high level kasuga 98.0 3.6E-06 1.2E-10 73.6 3.8 83 182-268 11-105 (252)
276 4auk_A Ribosomal RNA large sub 98.0 4.4E-05 1.5E-09 69.6 10.6 69 192-262 209-280 (375)
277 3bt7_A TRNA (uracil-5-)-methyl 97.9 3.5E-06 1.2E-10 78.1 2.8 88 195-295 214-327 (369)
278 3v97_A Ribosomal RNA large sub 97.9 2E-05 6.8E-10 79.0 7.5 109 183-296 181-349 (703)
279 2dul_A N(2),N(2)-dimethylguano 97.7 1.4E-05 4.9E-10 74.0 3.5 92 194-294 47-164 (378)
280 3eld_A Methyltransferase; flav 97.7 0.00016 5.4E-09 63.5 9.7 105 182-292 71-189 (300)
281 2ar0_A M.ecoki, type I restric 97.7 5E-05 1.7E-09 73.8 7.0 100 193-295 168-313 (541)
282 2b9e_A NOL1/NOP2/SUN domain fa 97.7 8.3E-05 2.9E-09 66.9 7.8 67 192-258 100-180 (309)
283 2uyo_A Hypothetical protein ML 97.7 0.00017 5.7E-09 64.9 9.2 143 194-343 102-274 (310)
284 3axs_A Probable N(2),N(2)-dime 97.6 1.3E-05 4.5E-10 74.4 1.9 92 194-294 52-158 (392)
285 2oyr_A UPF0341 protein YHIQ; a 97.6 2.7E-05 9.1E-10 68.1 2.4 94 183-283 77-192 (258)
286 2px2_A Genome polyprotein [con 97.5 0.0006 2E-08 58.5 10.6 104 182-292 63-181 (269)
287 3iei_A Leucine carboxyl methyl 97.5 0.0025 8.5E-08 57.7 14.5 146 194-348 90-281 (334)
288 3s1s_A Restriction endonucleas 97.5 0.00027 9.1E-09 70.5 8.6 101 193-296 320-467 (878)
289 3p8z_A Mtase, non-structural p 97.4 0.0011 3.6E-08 56.1 10.3 110 182-299 68-190 (267)
290 3ll7_A Putative methyltransfer 97.4 4.3E-05 1.5E-09 71.1 1.9 65 193-259 92-170 (410)
291 3lkd_A Type I restriction-modi 97.4 0.00031 1.1E-08 68.0 7.8 98 194-295 221-359 (542)
292 3lkz_A Non-structural protein 97.4 0.0012 3.9E-08 57.8 10.2 110 182-298 84-207 (321)
293 2vz8_A Fatty acid synthase; tr 97.3 0.00013 4.4E-09 82.6 5.1 142 194-347 1240-1394(2512)
294 1wg8_A Predicted S-adenosylmet 97.3 0.00021 7.2E-09 62.6 4.8 73 182-258 12-95 (285)
295 3c6k_A Spermine synthase; sper 97.3 0.00012 4.1E-09 67.0 3.2 96 194-293 205-330 (381)
296 2heo_A Z-DNA binding protein 1 97.2 0.00015 5.2E-09 49.2 2.2 55 37-102 12-66 (67)
297 3khk_A Type I restriction-modi 97.1 0.00026 8.8E-09 68.7 3.9 97 195-294 245-395 (544)
298 3cvo_A Methyltransferase-like 97.0 0.0019 6.4E-08 54.0 7.6 90 193-296 29-155 (202)
299 2wk1_A NOVP; transferase, O-me 97.0 0.0016 5.4E-08 57.5 7.5 96 193-296 105-245 (282)
300 1y0u_A Arsenical resistance op 96.9 0.00064 2.2E-08 49.7 3.5 62 30-106 26-87 (96)
301 3b73_A PHIH1 repressor-like pr 96.9 0.00037 1.3E-08 52.3 1.9 63 37-111 15-79 (111)
302 3pqk_A Biofilm growth-associat 96.6 0.0016 5.5E-08 48.0 4.1 51 32-87 20-70 (102)
303 3mq0_A Transcriptional repress 96.6 0.00085 2.9E-08 59.2 3.0 57 38-105 33-89 (275)
304 3jth_A Transcription activator 96.6 0.0012 4E-08 48.4 2.9 53 30-87 18-70 (98)
305 1xmk_A Double-stranded RNA-spe 96.5 0.0014 4.7E-08 45.8 2.6 60 37-106 13-73 (79)
306 1u2w_A CADC repressor, cadmium 96.4 0.0018 6.1E-08 49.6 2.8 55 29-87 36-90 (122)
307 3f6o_A Probable transcriptiona 96.3 0.0015 5.2E-08 49.7 2.2 53 30-87 13-65 (118)
308 3r4k_A Transcriptional regulat 96.3 0.0014 4.7E-08 57.4 2.2 58 38-105 9-66 (260)
309 2oqg_A Possible transcriptiona 96.3 0.0017 5.9E-08 48.8 2.4 47 36-87 22-68 (114)
310 1r1u_A CZRA, repressor protein 96.3 0.0017 6E-08 48.3 2.3 49 34-87 25-73 (106)
311 2kko_A Possible transcriptiona 96.2 0.0011 3.7E-08 49.6 1.0 46 37-87 27-72 (108)
312 3r24_A NSP16, 2'-O-methyl tran 96.2 0.022 7.5E-07 49.8 9.0 92 192-293 107-216 (344)
313 3vyw_A MNMC2; tRNA wobble urid 96.2 0.017 5.8E-07 51.3 8.5 127 194-357 96-257 (308)
314 2jsc_A Transcriptional regulat 96.2 0.0019 6.7E-08 49.1 2.1 52 31-87 17-68 (118)
315 3tka_A Ribosomal RNA small sub 96.1 0.0067 2.3E-07 54.4 5.6 64 182-247 47-114 (347)
316 2xrn_A HTH-type transcriptiona 96.1 0.0027 9.2E-08 54.9 2.9 58 39-106 10-67 (241)
317 2jt1_A PEFI protein; solution 96.1 0.0026 8.8E-08 44.2 2.2 37 48-87 22-58 (77)
318 3cuo_A Uncharacterized HTH-typ 96.1 0.0029 1E-07 46.1 2.7 52 32-87 21-72 (99)
319 3f6v_A Possible transcriptiona 96.1 0.0028 9.4E-08 50.5 2.7 55 28-87 51-105 (151)
320 1mkm_A ICLR transcriptional re 96.0 0.0035 1.2E-07 54.4 3.3 57 38-105 11-67 (249)
321 1qgp_A Protein (double strande 96.0 0.0037 1.3E-07 43.5 2.8 58 37-103 16-75 (77)
322 2o0y_A Transcriptional regulat 96.0 0.0036 1.2E-07 54.7 3.3 57 38-105 26-82 (260)
323 4a5n_A Uncharacterized HTH-typ 96.0 0.013 4.4E-07 45.3 6.1 78 15-109 15-94 (131)
324 2g7u_A Transcriptional regulat 96.0 0.0041 1.4E-07 54.3 3.5 57 38-106 17-73 (257)
325 1qbj_A Protein (double-strande 96.0 0.0065 2.2E-07 42.6 3.9 61 37-106 12-74 (81)
326 2ia2_A Putative transcriptiona 95.8 0.0046 1.6E-07 54.2 2.9 56 38-105 24-79 (265)
327 3df8_A Possible HXLR family tr 95.7 0.0037 1.3E-07 46.9 1.9 75 15-109 16-93 (111)
328 1r1t_A Transcriptional repress 95.7 0.006 2E-07 46.6 3.1 49 34-87 45-93 (122)
329 4fzv_A Putative methyltransfer 95.7 0.017 5.8E-07 52.8 6.3 109 192-303 146-293 (359)
330 1oyi_A Double-stranded RNA-bin 95.7 0.0063 2.2E-07 42.6 2.7 59 35-104 17-75 (82)
331 1z7u_A Hypothetical protein EF 95.6 0.016 5.6E-07 43.3 5.2 80 13-109 9-90 (112)
332 2hzt_A Putative HTH-type trans 95.6 0.008 2.7E-07 44.7 3.4 76 17-109 5-82 (107)
333 2zwa_A Leucine carboxyl methyl 95.5 0.1 3.6E-06 52.1 12.2 148 194-348 107-309 (695)
334 1i4w_A Mitochondrial replicati 95.5 0.012 4.1E-07 53.6 4.9 54 195-248 59-116 (353)
335 2y75_A HTH-type transcriptiona 95.5 0.015 5.3E-07 44.7 4.9 48 49-105 25-72 (129)
336 3ech_A MEXR, multidrug resista 95.4 0.017 5.8E-07 45.0 4.8 68 35-109 37-105 (142)
337 1xn7_A Hypothetical protein YH 95.4 0.01 3.6E-07 41.3 3.1 43 40-86 7-49 (78)
338 1r7j_A Conserved hypothetical 95.4 0.011 3.6E-07 43.0 3.2 47 51-109 21-67 (95)
339 1ub9_A Hypothetical protein PH 95.2 0.0065 2.2E-07 44.2 1.5 71 30-106 11-81 (100)
340 2k02_A Ferrous iron transport 95.1 0.011 3.6E-07 42.0 2.4 44 40-87 7-50 (87)
341 3lwf_A LIN1550 protein, putati 95.1 0.027 9.2E-07 45.1 5.1 48 49-105 43-90 (159)
342 1yyv_A Putative transcriptiona 95.1 0.011 3.7E-07 45.8 2.6 77 16-109 25-103 (131)
343 1on2_A Transcriptional regulat 95.0 0.011 3.8E-07 46.2 2.6 50 49-109 21-70 (142)
344 2fu4_A Ferric uptake regulatio 95.0 0.0098 3.4E-07 41.8 2.0 49 36-87 18-72 (83)
345 3iht_A S-adenosyl-L-methionine 95.0 0.13 4.3E-06 40.4 8.3 55 194-248 40-94 (174)
346 2fsw_A PG_0823 protein; alpha- 95.0 0.026 9E-07 41.8 4.5 78 15-109 14-93 (107)
347 2htj_A P fimbrial regulatory p 95.0 0.023 7.9E-07 39.7 3.9 44 39-86 4-47 (81)
348 3fm5_A Transcriptional regulat 94.9 0.018 6.2E-07 45.3 3.6 66 36-109 40-108 (150)
349 1ylf_A RRF2 family protein; st 94.8 0.031 1.1E-06 44.2 4.8 61 30-105 15-75 (149)
350 4g6q_A Putative uncharacterize 94.8 0.01 3.5E-07 48.8 2.0 73 29-106 17-90 (182)
351 2zig_A TTHA0409, putative modi 94.8 0.019 6.4E-07 51.2 3.8 40 193-234 234-274 (297)
352 2lnb_A Z-DNA-binding protein 1 94.8 0.018 6.2E-07 39.1 2.7 56 36-102 20-75 (80)
353 3k69_A Putative transcription 94.8 0.041 1.4E-06 44.2 5.4 49 49-106 27-75 (162)
354 3t8r_A Staphylococcus aureus C 94.7 0.031 1.1E-06 43.9 4.5 48 49-105 27-74 (143)
355 3ufb_A Type I restriction-modi 94.6 0.11 3.7E-06 50.1 8.9 100 193-295 216-363 (530)
356 2zkz_A Transcriptional repress 94.6 0.012 4E-07 43.1 1.5 48 34-87 26-74 (99)
357 2lkp_A Transcriptional regulat 94.5 0.017 5.8E-07 43.7 2.5 48 35-87 32-79 (119)
358 2f2e_A PA1607; transcription f 94.5 0.025 8.7E-07 44.6 3.4 77 16-109 14-90 (146)
359 1tbx_A ORF F-93, hypothetical 94.4 0.016 5.5E-07 42.2 2.0 62 39-109 12-77 (99)
360 3r0a_A Putative transcriptiona 94.2 0.019 6.4E-07 43.9 2.0 47 37-86 28-75 (123)
361 2wte_A CSA3; antiviral protein 94.2 0.019 6.4E-07 49.5 2.2 62 37-109 154-215 (244)
362 3k0l_A Repressor protein; heli 94.1 0.062 2.1E-06 42.8 5.0 66 37-109 48-114 (162)
363 2x4h_A Hypothetical protein SS 94.1 0.027 9.1E-07 43.8 2.7 49 48-108 29-77 (139)
364 2p4w_A Transcriptional regulat 94.0 0.037 1.3E-06 46.2 3.6 70 31-105 11-80 (202)
365 2qvo_A Uncharacterized protein 93.8 0.032 1.1E-06 40.3 2.5 49 50-109 30-81 (95)
366 2nyx_A Probable transcriptiona 93.7 0.058 2E-06 43.3 4.2 66 37-109 47-113 (168)
367 2pg4_A Uncharacterized protein 93.6 0.037 1.3E-06 39.9 2.6 61 41-109 21-83 (95)
368 3bdd_A Regulatory protein MARR 93.6 0.035 1.2E-06 42.9 2.6 66 37-109 33-99 (142)
369 2obp_A Putative DNA-binding pr 93.5 0.066 2.3E-06 38.7 3.7 54 48-108 34-87 (96)
370 1xd7_A YWNA; structural genomi 93.5 0.068 2.3E-06 42.0 4.1 45 52-106 25-69 (145)
371 3kp7_A Transcriptional regulat 93.4 0.13 4.6E-06 40.2 5.9 43 38-85 41-83 (151)
372 2h09_A Transcriptional regulat 93.4 0.038 1.3E-06 43.8 2.6 49 49-108 53-101 (155)
373 2qlz_A Transcription factor PF 93.4 0.017 5.9E-07 49.3 0.5 52 29-85 6-57 (232)
374 3deu_A Transcriptional regulat 93.3 0.021 7.2E-07 45.9 0.9 67 37-109 55-122 (166)
375 3bja_A Transcriptional regulat 93.2 0.025 8.5E-07 43.6 1.1 66 37-109 35-101 (139)
376 2nnn_A Probable transcriptiona 93.2 0.023 7.8E-07 43.9 0.9 66 37-109 40-106 (140)
377 3nrv_A Putative transcriptiona 93.1 0.023 7.8E-07 44.5 0.8 67 36-109 41-108 (148)
378 3cdh_A Transcriptional regulat 93.1 0.033 1.1E-06 44.0 1.7 66 37-109 45-111 (155)
379 3bpv_A Transcriptional regulat 93.0 0.028 9.6E-07 43.3 1.2 47 37-87 31-77 (138)
380 3boq_A Transcriptional regulat 93.0 0.025 8.4E-07 45.0 0.8 67 37-109 49-116 (160)
381 3bro_A Transcriptional regulat 93.0 0.034 1.2E-06 43.0 1.7 66 38-109 37-104 (141)
382 3hrs_A Metalloregulator SCAR; 92.9 0.073 2.5E-06 44.8 3.8 51 48-109 18-68 (214)
383 3eco_A MEPR; mutlidrug efflux 92.8 0.025 8.6E-07 43.7 0.7 67 37-109 33-101 (139)
384 1jgs_A Multiple antibiotic res 92.8 0.039 1.3E-06 42.5 1.7 66 37-109 36-102 (138)
385 1s3j_A YUSO protein; structura 92.7 0.13 4.4E-06 40.4 4.8 65 38-109 40-105 (155)
386 3u2r_A Regulatory protein MARR 92.7 0.041 1.4E-06 44.2 1.9 65 37-109 48-116 (168)
387 3g3z_A NMB1585, transcriptiona 92.6 0.12 3.9E-06 40.2 4.4 67 36-109 32-99 (145)
388 4hbl_A Transcriptional regulat 92.6 0.03 1E-06 44.0 0.8 67 36-109 42-109 (149)
389 3f3x_A Transcriptional regulat 92.6 0.16 5.4E-06 39.4 5.1 64 36-109 38-104 (144)
390 2qww_A Transcriptional regulat 92.5 0.04 1.4E-06 43.4 1.5 66 37-109 43-111 (154)
391 3oop_A LIN2960 protein; protei 92.5 0.023 7.9E-07 44.2 -0.0 66 37-109 39-105 (143)
392 3bj6_A Transcriptional regulat 92.5 0.03 1E-06 44.0 0.7 65 37-108 42-107 (152)
393 2hr3_A Probable transcriptiona 92.4 0.07 2.4E-06 41.5 2.8 68 36-109 36-104 (147)
394 2gxg_A 146AA long hypothetical 92.4 0.046 1.6E-06 42.5 1.7 66 36-109 38-104 (146)
395 1q1h_A TFE, transcription fact 92.3 0.043 1.5E-06 40.7 1.4 47 37-86 20-66 (110)
396 1sfx_A Conserved hypothetical 92.2 0.059 2E-06 39.4 2.0 47 37-87 22-68 (109)
397 4aik_A Transcriptional regulat 92.2 0.066 2.3E-06 42.3 2.4 62 40-109 36-100 (151)
398 2fbh_A Transcriptional regulat 92.2 0.052 1.8E-06 42.2 1.7 64 38-108 40-105 (146)
399 1bja_A Transcription regulator 92.0 0.074 2.5E-06 38.3 2.2 57 40-109 21-78 (95)
400 3hsr_A HTH-type transcriptiona 92.0 0.051 1.7E-06 42.1 1.5 66 37-109 38-104 (140)
401 2rdp_A Putative transcriptiona 92.0 0.038 1.3E-06 43.3 0.7 66 37-109 44-110 (150)
402 2fa5_A Transcriptional regulat 92.0 0.038 1.3E-06 44.0 0.7 66 37-109 51-117 (162)
403 3cjn_A Transcriptional regulat 91.9 0.036 1.2E-06 44.1 0.5 67 36-109 53-120 (162)
404 2a61_A Transcriptional regulat 91.9 0.06 2.1E-06 41.8 1.8 65 36-109 34-101 (145)
405 2bv6_A MGRA, HTH-type transcri 91.8 0.063 2.1E-06 41.6 1.8 66 36-108 38-104 (142)
406 1lj9_A Transcriptional regulat 91.8 0.04 1.4E-06 42.8 0.6 65 38-109 32-97 (144)
407 2pex_A Transcriptional regulat 91.7 0.075 2.6E-06 41.7 2.2 66 37-109 49-115 (153)
408 3s2w_A Transcriptional regulat 91.6 0.039 1.3E-06 43.8 0.4 64 39-109 54-118 (159)
409 3tgn_A ADC operon repressor AD 91.5 0.094 3.2E-06 40.7 2.6 47 36-87 39-85 (146)
410 1uly_A Hypothetical protein PH 91.5 0.13 4.3E-06 42.5 3.4 51 31-86 16-66 (192)
411 2eth_A Transcriptional regulat 91.4 0.051 1.7E-06 42.9 0.9 67 36-109 45-112 (154)
412 1v4r_A Transcriptional repress 91.2 0.21 7.2E-06 36.4 4.1 53 31-87 15-69 (102)
413 1z91_A Organic hydroperoxide r 91.2 0.083 2.8E-06 41.1 2.0 67 37-110 42-109 (147)
414 2fxa_A Protease production reg 91.1 0.33 1.1E-05 40.4 5.7 65 38-109 51-116 (207)
415 3i71_A Ethanolamine utilizatio 91.1 0.34 1.2E-05 30.7 4.2 44 49-104 17-60 (68)
416 3e6m_A MARR family transcripti 91.1 0.15 5.3E-06 40.4 3.5 66 37-109 55-121 (161)
417 2o03_A Probable zinc uptake re 91.0 0.12 4E-06 39.8 2.6 51 34-87 10-65 (131)
418 2fbk_A Transcriptional regulat 90.8 0.051 1.7E-06 44.3 0.4 67 37-109 71-140 (181)
419 2d1h_A ST1889, 109AA long hypo 90.8 0.15 5.2E-06 37.2 3.0 36 49-87 35-70 (109)
420 2esh_A Conserved hypothetical 90.8 0.26 9E-06 37.0 4.3 70 34-109 12-90 (118)
421 2cfx_A HTH-type transcriptiona 90.7 0.13 4.5E-06 40.2 2.7 45 38-86 8-52 (144)
422 2pn6_A ST1022, 150AA long hypo 90.7 0.11 3.8E-06 40.8 2.2 46 37-86 5-50 (150)
423 1p6r_A Penicillinase repressor 90.6 0.075 2.6E-06 37.1 1.0 49 38-87 12-61 (82)
424 3k2z_A LEXA repressor; winged 90.5 0.13 4.4E-06 42.6 2.6 37 48-87 22-58 (196)
425 3jw4_A Transcriptional regulat 90.5 0.23 7.8E-06 38.7 3.9 47 38-87 44-91 (148)
426 2fbi_A Probable transcriptiona 90.4 0.069 2.3E-06 41.2 0.8 48 36-87 37-84 (142)
427 1sfu_A 34L protein; protein/Z- 90.4 0.29 9.8E-06 33.3 3.7 43 41-87 21-63 (75)
428 2w25_A Probable transcriptiona 90.4 0.14 4.9E-06 40.2 2.6 46 37-86 9-54 (150)
429 1cf7_A Protein (transcription 90.3 0.24 8.3E-06 34.0 3.4 37 49-87 29-65 (76)
430 3u1d_A Uncharacterized protein 90.2 1.3 4.5E-05 34.7 8.0 70 36-109 30-105 (151)
431 1zkd_A DUF185; NESG, RPR58, st 90.2 0.29 9.8E-06 45.0 4.8 38 193-230 79-123 (387)
432 2k4b_A Transcriptional regulat 90.0 0.11 3.9E-06 37.8 1.6 50 37-87 37-87 (99)
433 2p5v_A Transcriptional regulat 90.0 0.16 5.5E-06 40.5 2.6 45 38-86 13-57 (162)
434 3nqo_A MARR-family transcripti 89.5 0.089 3.1E-06 43.2 0.8 69 36-110 42-112 (189)
435 1g60_A Adenine-specific methyl 89.4 0.26 8.8E-06 42.7 3.7 39 193-233 211-250 (260)
436 2cg4_A Regulatory protein ASNC 89.4 0.17 5.8E-06 39.8 2.3 46 37-86 10-55 (152)
437 2fe3_A Peroxide operon regulat 89.3 0.19 6.5E-06 39.3 2.6 51 34-87 21-76 (145)
438 3tos_A CALS11; methyltransfera 89.1 0.58 2E-05 40.4 5.7 95 194-296 69-218 (257)
439 2dbb_A Putative HTH-type trans 89.1 0.19 6.5E-06 39.5 2.4 46 37-86 11-56 (151)
440 1ku9_A Hypothetical protein MJ 89.1 0.79 2.7E-05 35.3 6.1 35 49-86 40-74 (152)
441 1j5y_A Transcriptional regulat 89.1 0.29 9.9E-06 40.1 3.6 57 36-104 22-79 (187)
442 3elk_A Putative transcriptiona 89.1 0.18 6.1E-06 38.0 2.1 75 30-109 9-89 (117)
443 2ia0_A Putative HTH-type trans 88.8 0.22 7.6E-06 40.2 2.6 46 37-86 19-64 (171)
444 2cyy_A Putative HTH-type trans 88.8 0.16 5.3E-06 40.1 1.7 46 37-86 9-54 (151)
445 2vn2_A DNAD, chromosome replic 88.6 0.3 1E-05 37.3 3.2 35 50-87 51-85 (128)
446 1g55_A DNA cytosine methyltran 88.6 1.4 4.9E-05 39.7 8.2 125 195-344 2-145 (343)
447 2frh_A SARA, staphylococcal ac 88.5 0.13 4.5E-06 39.1 1.1 66 38-109 40-107 (127)
448 3i4p_A Transcriptional regulat 88.3 0.21 7.3E-06 39.8 2.3 46 37-86 5-50 (162)
449 2dk5_A DNA-directed RNA polyme 88.3 0.17 5.9E-06 36.1 1.5 45 40-87 25-70 (91)
450 1okr_A MECI, methicillin resis 88.2 0.09 3.1E-06 39.7 -0.0 36 49-87 23-62 (123)
451 4esf_A PADR-like transcription 88.2 0.42 1.4E-05 35.9 3.7 73 32-109 8-86 (117)
452 1i1g_A Transcriptional regulat 87.9 0.19 6.5E-06 38.9 1.7 45 38-86 7-51 (141)
453 4b8x_A SCO5413, possible MARR- 87.9 0.19 6.4E-06 39.3 1.6 53 49-109 50-105 (147)
454 2e1c_A Putative HTH-type trans 87.7 0.22 7.6E-06 40.2 2.0 47 36-86 28-74 (171)
455 3g7u_A Cytosine-specific methy 87.3 2 7E-05 39.2 8.5 97 196-299 3-123 (376)
456 1mzb_A Ferric uptake regulatio 87.3 0.27 9.3E-06 38.0 2.2 50 35-87 18-73 (136)
457 2xig_A Ferric uptake regulatio 87.3 0.37 1.3E-05 37.9 3.0 51 34-87 26-81 (150)
458 2xvc_A ESCRT-III, SSO0910; cel 87.2 0.34 1.2E-05 30.7 2.2 45 39-86 14-58 (59)
459 4fx0_A Probable transcriptiona 86.9 0.27 9.2E-06 38.5 2.0 35 49-86 51-85 (148)
460 3f8b_A Transcriptional regulat 86.8 0.51 1.8E-05 35.3 3.4 75 30-109 7-89 (116)
461 2b0l_A GTP-sensing transcripti 86.4 0.58 2E-05 34.1 3.5 45 39-87 32-77 (102)
462 3ubt_Y Modification methylase 86.4 3.7 0.00013 36.5 9.6 121 196-344 1-139 (331)
463 3mwm_A ZUR, putative metal upt 86.0 0.37 1.3E-05 37.4 2.4 51 34-87 13-68 (139)
464 2v79_A DNA replication protein 85.8 0.52 1.8E-05 36.4 3.1 35 49-86 50-84 (135)
465 2g9w_A Conserved hypothetical 85.6 0.35 1.2E-05 37.4 2.0 47 38-87 12-62 (138)
466 1xma_A Predicted transcription 85.2 0.29 9.9E-06 38.3 1.4 71 34-109 40-118 (145)
467 2hoe_A N-acetylglucosamine kin 85.0 0.68 2.3E-05 42.4 4.0 54 29-87 14-67 (380)
468 3ggo_A Prephenate dehydrogenas 84.7 1.7 5.7E-05 38.7 6.4 84 195-283 33-120 (314)
469 3cta_A Riboflavin kinase; stru 84.6 0.43 1.5E-05 40.4 2.3 53 49-109 26-78 (230)
470 1fx7_A Iron-dependent represso 84.4 0.28 9.7E-06 41.6 1.1 48 51-109 25-72 (230)
471 2pjp_A Selenocysteine-specific 84.4 0.76 2.6E-05 34.6 3.4 54 37-103 9-62 (121)
472 3qv2_A 5-cytosine DNA methyltr 84.0 1.3 4.5E-05 39.6 5.4 127 194-345 9-157 (327)
473 3mag_A VP39; methylated adenin 83.9 1.3 4.6E-05 38.5 5.0 35 194-228 60-98 (307)
474 2py6_A Methyltransferase FKBM; 83.3 1.3 4.5E-05 41.0 5.2 40 193-232 225-267 (409)
475 3hhh_A Transcriptional regulat 83.2 0.64 2.2E-05 34.8 2.5 74 31-109 9-88 (116)
476 2w57_A Ferric uptake regulatio 83.0 0.55 1.9E-05 36.9 2.1 50 35-87 17-72 (150)
477 2qq9_A Diphtheria toxin repres 82.8 0.91 3.1E-05 38.3 3.6 49 50-109 24-72 (226)
478 2qlz_A Transcription factor PF 82.3 1.7 5.8E-05 36.8 5.1 52 38-102 168-219 (232)
479 1p4x_A Staphylococcal accessor 82.3 0.43 1.5E-05 41.1 1.4 67 37-109 160-228 (250)
480 2c7p_A Modification methylase 82.3 4.6 0.00016 36.0 8.2 121 195-345 11-150 (327)
481 2g1u_A Hypothetical protein TM 82.2 15 0.00052 28.2 12.0 84 194-283 18-110 (155)
482 1jhg_A Trp operon repressor; c 81.9 0.75 2.6E-05 33.4 2.3 41 33-78 43-83 (101)
483 1sd4_A Penicillinase repressor 81.9 0.4 1.4E-05 36.1 0.9 49 38-87 13-62 (126)
484 3tqn_A Transcriptional regulat 81.6 1.3 4.5E-05 32.7 3.7 36 49-87 31-67 (113)
485 3fwz_A Inner membrane protein 81.5 3.8 0.00013 31.3 6.5 88 195-292 7-103 (140)
486 1yg2_A Gene activator APHA; vi 81.4 0.83 2.9E-05 37.0 2.7 65 37-106 4-76 (179)
487 2yu3_A DNA-directed RNA polyme 80.7 0.67 2.3E-05 33.2 1.7 47 38-87 40-87 (95)
488 1lss_A TRK system potassium up 80.7 4.2 0.00014 30.5 6.5 87 195-292 4-100 (140)
489 2ek5_A Predicted transcription 80.6 2.2 7.4E-05 32.5 4.7 37 48-87 25-62 (129)
490 3l7w_A Putative uncharacterize 79.9 0.23 7.9E-06 36.7 -1.0 67 36-109 10-81 (108)
491 1z6r_A MLC protein; transcript 79.4 1.4 4.8E-05 40.6 3.9 51 33-87 14-64 (406)
492 2o0m_A Transcriptional regulat 79.0 0.4 1.4E-05 43.4 0.0 61 37-110 22-82 (345)
493 2p8t_A Hypothetical protein PH 78.9 1.4 4.9E-05 36.2 3.3 48 49-108 29-76 (200)
494 4f3n_A Uncharacterized ACR, CO 78.8 2.1 7.3E-05 39.7 4.9 61 162-230 113-178 (432)
495 2oo3_A Protein involved in cat 78.7 3.8 0.00013 35.7 6.1 100 195-299 92-203 (283)
496 1bia_A BIRA bifunctional prote 78.6 1.6 5.6E-05 38.9 3.9 55 39-104 9-63 (321)
497 3ius_A Uncharacterized conserv 78.4 9.3 0.00032 32.7 8.8 95 196-296 6-104 (286)
498 3ps9_A TRNA 5-methylaminomethy 78.2 3.3 0.00011 40.9 6.5 33 194-226 66-110 (676)
499 3maj_A DNA processing chain A; 77.5 1.4 4.9E-05 40.2 3.2 52 37-101 330-381 (382)
500 3b1f_A Putative prephenate deh 77.3 4.2 0.00015 35.3 6.3 89 195-292 6-98 (290)
No 1
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=100.00 E-value=1.7e-52 Score=389.90 Aligned_cols=328 Identities=20% Similarity=0.351 Sum_probs=288.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeeccccccc
Q 018205 14 EAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQ 93 (359)
Q Consensus 14 ~~~~~l~~~~~g~~~~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~ 93 (359)
+++..|.+++.||+.+++|++|++|||||.|.+.++|+|++|||+++|+ +++.++||||+|++.|++++..+.
T Consensus 7 ~~~~~L~~l~~Gf~~s~~L~aa~eLglfd~L~~~~~p~t~~eLA~~~g~---~~~~l~rlLr~L~~~gll~~~~~~---- 79 (353)
T 4a6d_A 7 QAYRLLNDYANGFMVSQVLFAACELGVFDLLAEAPGPLDVAAVAAGVRA---SAHGTELLLDICVSLKLLKVETRG---- 79 (353)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHSSSCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEET----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHhcCCCCCCHHHHHHhhCc---CHHHHHHHHHHHHHCCCEEEeccC----
Confidence 6677899999999999999999999999999875579999999999999 789999999999999999865321
Q ss_pred CccceEecccccc-ccccCCCCChhhHHhhhcCcccccchhhhhHhhhcCCCchhhhhcC--CCChhhhcccCccHHHHH
Q 018205 94 QEEEAYALTLTSK-LFLKDKPYCLSPVVLTLTDQVFVNPCHFLSRWFRDNELSAYETAND--GTVFWDYMAKNPDFNSIY 170 (359)
Q Consensus 94 ~~~~~~~~t~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~ 170 (359)
+++.|++|+.++ ++.++++.++..++.+.. ...+..|..|.++++++. +++...++ +.++|+++.++++....|
T Consensus 80 -~~~~y~~t~~s~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~L~~~vr~g~-~~~~~~~g~~~~~~~~~~~~~~~~~~~f 156 (353)
T 4a6d_A 80 -GKAFYRNTELSSDYLTTVSPTSQCSMLKYMG-RTSYRCWGHLADAVREGR-NQYLETFGVPAEELFTAIYRSEGERLQF 156 (353)
T ss_dssp -TEEEEEECHHHHHHHSTTSTTCCHHHHHHHH-HTHHHHHTTHHHHHHHTS-CCHHHHHSCCCSSHHHHHTSSHHHHHHH
T ss_pred -ccceeeCCHHHHHHhhcCCchHHHHHHHHhC-HHHHHHHHHHHHHHhcCC-ChhHHhcCCChHHHHHHHhhCHHHHHHH
Confidence 145899999887 566778888888887764 346788999999999998 56777762 257899999999999999
Q ss_pred HHHHhhcccch-HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCC------CCCCceEee
Q 018205 171 NQAMASDSQLA-NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVP------DTDNLKFIA 243 (359)
Q Consensus 171 ~~~m~~~~~~~-~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~------~~~~v~~~~ 243 (359)
+.+|....... +.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|++++.|+ ..+||+++.
T Consensus 157 ~~aM~~~~~~~~~~~~~~~~--~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~~rv~~~~ 234 (353)
T 4a6d_A 157 MQALQEVWSVNGRSVLTAFD--LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDFQE 234 (353)
T ss_dssp HHHHHTTHHHHHHHHHHSSC--GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--CCSEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhcC--cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcccCceeeec
Confidence 99999888776 88888888 7888999999999999999999999999999999998887665 258999999
Q ss_pred CCCCC-CCCCccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcC
Q 018205 244 GDMFQ-SIPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVR 322 (359)
Q Consensus 244 ~d~~~-~~p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (359)
+|+++ +.|++|+|+++++||+|+|+++.++|++++++|+| ||+++|+|...++....+ .....+|+.|+...+
T Consensus 235 gD~~~~~~~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~p---gg~lli~e~~~~~~~~~~---~~~~~~dl~ml~~~~ 308 (353)
T 4a6d_A 235 GDFFKDPLPEADLYILARVLHDWADGKCSHLLERIYHTCKP---GGGILVIESLLDEDRRGP---LLTQLYSLNMLVQTE 308 (353)
T ss_dssp SCTTTSCCCCCSEEEEESSGGGSCHHHHHHHHHHHHHHCCT---TCEEEEEECCCCTTSCCC---HHHHHHHHHHHHSSS
T ss_pred CccccCCCCCceEEEeeeecccCCHHHHHHHHHHHHhhCCC---CCEEEEEEeeeCCCCCCC---HHHHHHHHHHHHhCC
Confidence 99987 46789999999999999999999999999999999 999999999987665433 234568899998889
Q ss_pred CcccCHHHHHHHHHHcCCceeEEEEeCCceeEEEEeC
Q 018205 323 GSERTEKEWEKLFLDAGFSHFKITPVYGIKSLIEVYP 359 (359)
Q Consensus 323 g~~~t~~~~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 359 (359)
|++||.+||+++|++|||+.+++++.+...++|+++|
T Consensus 309 g~ert~~e~~~ll~~AGf~~v~v~~~~~~~~~i~ArK 345 (353)
T 4a6d_A 309 GQERTPTHYHMLLSSAGFRDFQFKKTGAIYDAILARK 345 (353)
T ss_dssp CCCCCHHHHHHHHHHHTCEEEEEECCSSSCEEEEEEC
T ss_pred CcCCCHHHHHHHHHHCCCceEEEEEcCCceEEEEEEe
Confidence 9999999999999999999999999999999999986
No 2
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=100.00 E-value=1.3e-50 Score=378.77 Aligned_cols=346 Identities=27% Similarity=0.485 Sum_probs=295.3
Q ss_pred CchhhHHHHHHHHHHHHhHHHHHHHHHHHhcCcchhcccCC-CCCCHHHHHHhcCC--CCCCcccHHHHHHHHHccCcee
Q 018205 8 GAKEMFEAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHG-RPITLPQLVSALEI--NPTKADGLFKLMRLLVHTGFFS 84 (359)
Q Consensus 8 ~~~~~~~~~~~l~~~~~g~~~~~~l~~a~~lglf~~L~~~~-~~~t~~ela~~~~~--~~~~~~~l~~~L~~L~~~gll~ 84 (359)
...+..+++..+++++.+++.+++|++|+++|||+.|.+.| +|+|++|||+++|+ +|.+...|+||||+|++.|+|+
T Consensus 13 ~~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lgifd~L~~~g~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~g~l~ 92 (364)
T 3p9c_A 13 AASADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAGGKSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVT 92 (364)
T ss_dssp CHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTHHHHHHHTTTCCBCHHHHHHTTTCTTCTTHHHHHHHHHHHHHHTTSEE
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHCChHHHHhhcCCCCCCHHHHHHhcCCCCCccchhhHHHHHHHHHhCCCEE
Confidence 44567778999999999999999999999999999998854 69999999999997 5433449999999999999999
Q ss_pred eecccccccCccceEeccccccccccC-CCCChhhHHhhhcCcccccchhhhhHhhhcCCCchhhhhcCCCChhhhcccC
Q 018205 85 TANVQSAQQQEEEAYALTLTSKLFLKD-KPYCLSPVVLTLTDQVFVNPCHFLSRWFRDNELSAYETANDGTVFWDYMAKN 163 (359)
Q Consensus 85 ~~~~~~~~~~~~~~~~~t~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~g~~~~~~~~~~ 163 (359)
+......+...+++|++|+.++.|+.+ .+.++..++.+...+.++..|.+|.+++++|. ++|+..+ |.++|+++.++
T Consensus 93 ~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~r~g~-~~~~~~~-g~~~~~~~~~~ 170 (364)
T 3p9c_A 93 CLVEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGG-IPFNKAY-GMSAFEYHGTD 170 (364)
T ss_dssp EEEEECSSSCEEEEEEECGGGGGSSCCTTSCCTHHHHHHHTSHHHHGGGGGHHHHHHHCS-CHHHHHH-SSCHHHHHTTC
T ss_pred EeccccCCCCcCCEEecCHHHHHHcCCCCCCCHHHHHHHhcCHHHHHHHhCHHHHHhhCC-ChHHHhc-CCCHHHHHHhC
Confidence 862100000003689999999988765 46688888877656667889999999999987 7899889 89999999999
Q ss_pred ccHHHHHHHHHhhcccch-HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCCCCCceEe
Q 018205 164 PDFNSIYNQAMASDSQLA-NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPDTDNLKFI 242 (359)
Q Consensus 164 ~~~~~~~~~~m~~~~~~~-~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~ 242 (359)
++..+.|+.+|....... +.+++.++ .+++..+|||||||+|.++..+++++|+++++++|+|.+++.|+..++++++
T Consensus 171 ~~~~~~f~~~m~~~~~~~~~~~~~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~ 249 (364)
T 3p9c_A 171 PRFNRVFNEGMKNHSIIITKKLLELYH-GFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGVTHV 249 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEE
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhcc-cccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhhcCCeEEE
Confidence 999999999999877766 77888776 3567799999999999999999999999999999998899999988999999
Q ss_pred eCCCCCCCCCccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhh-hc
Q 018205 243 AGDMFQSIPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMV-AV 321 (359)
Q Consensus 243 ~~d~~~~~p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 321 (359)
.+|+++++|..|+|++++++|+|+++++.++|++++++|+| ||+++|.|...++.............+++.|+. ..
T Consensus 250 ~~D~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~p---gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~ 326 (364)
T 3p9c_A 250 GGDMFKEVPSGDTILMKWILHDWSDQHCATLLKNCYDALPA---HGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNP 326 (364)
T ss_dssp ECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCT---TCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCS
T ss_pred eCCcCCCCCCCCEEEehHHhccCCHHHHHHHHHHHHHHcCC---CCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhccc
Confidence 99998877767999999999999999999999999999999 999999999887654332112233457787774 36
Q ss_pred CCcccCHHHHHHHHHHcCCceeEEEEeCCceeEEEEeC
Q 018205 322 RGSERTEKEWEKLFLDAGFSHFKITPVYGIKSLIEVYP 359 (359)
Q Consensus 322 ~g~~~t~~~~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 359 (359)
+|+.||.++|.++|+++||+.+++.+..+..++||++|
T Consensus 327 ~g~~rt~~e~~~ll~~AGF~~v~~~~~~~~~~vie~~k 364 (364)
T 3p9c_A 327 GGRERYEREFQALARGAGFTGVKSTYIYANAWAIEFTK 364 (364)
T ss_dssp SCCCCBHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred CCccCCHHHHHHHHHHCCCceEEEEEcCCceEEEEEeC
Confidence 88999999999999999999999999999999999987
No 3
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=100.00 E-value=1.9e-49 Score=371.46 Aligned_cols=342 Identities=30% Similarity=0.519 Sum_probs=291.3
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHhcCcchhcccC---CCCCCHHHHHHhcC-CCCCCcccHHHHHHHHHccCceeee
Q 018205 11 EMFEAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKH---GRPITLPQLVSALE-INPTKADGLFKLMRLLVHTGFFSTA 86 (359)
Q Consensus 11 ~~~~~~~~l~~~~~g~~~~~~l~~a~~lglf~~L~~~---~~~~t~~ela~~~~-~~~~~~~~l~~~L~~L~~~gll~~~ 86 (359)
+..+++..+++++.|++.+++|++|+++|||+.|.+. ++|+|++|||+++| .+|.+.+.|+||||+|++.|+|++.
T Consensus 17 ~~~~~~~~~~~l~~~~~~~~~l~~a~~Lglfd~L~~~~gp~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 96 (368)
T 3reo_A 17 SDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVVTYT 96 (368)
T ss_dssp CHHHHHHHHHHHHTTTHHHHHHHHHHHTTHHHHHHHHCCTTCCBCHHHHHTTSSCCCTTHHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCchhHHhhcCCCCCCcCHHHHHHhcCcCCCcchhhHHHHHHHHHhCCCeEEe
Confidence 5667889999999999999999999999999999873 24799999999998 4543345999999999999999986
Q ss_pred cccccccC-ccceEeccccccccccC-CCCChhhHHhhhcCcccccchhhhhHhhhcCCCchhhhhcCCCChhhhcccCc
Q 018205 87 NVQSAQQQ-EEEAYALTLTSKLFLKD-KPYCLSPVVLTLTDQVFVNPCHFLSRWFRDNELSAYETANDGTVFWDYMAKNP 164 (359)
Q Consensus 87 ~~~~~~~~-~~~~~~~t~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~g~~~~~~~~~~~ 164 (359)
.... +.+ .+++|++|+.++.|+.+ .+.++..++.+..++.++..|.+|.+++++|. ++|+..+ |.++|+++++++
T Consensus 97 ~~~~-~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~g~-~~~~~~~-g~~~~~~~~~~~ 173 (368)
T 3reo_A 97 LREL-PSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGG-IPFNKAY-GMNIFDYHGTDH 173 (368)
T ss_dssp EEEC-TTSCEEEEEEECTTHHHHSCCTTSCCSHHHHHHHTCHHHHGGGGGHHHHHHHCS-CHHHHHS-SSCHHHHHTTCH
T ss_pred cccC-CCCcccceeCcCHHHHHHhCCCCCCCHHHHHHHhcCHHHHhhhhchHHHHhcCC-CHHHHHh-CCCHHHHHhhCH
Confidence 2000 000 02689999999987755 46788888877656667889999999999987 6899888 899999999999
Q ss_pred cHHHHHHHHHhhcccch-HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCCCCCceEee
Q 018205 165 DFNSIYNQAMASDSQLA-NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPDTDNLKFIA 243 (359)
Q Consensus 165 ~~~~~~~~~m~~~~~~~-~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~ 243 (359)
+..+.|+.+|....... ..+++.++ .+++..+|||||||+|.++..+++++|+++++++|+|.+++.++..++++++.
T Consensus 174 ~~~~~f~~~m~~~~~~~~~~~~~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~ 252 (368)
T 3reo_A 174 RINKVFNKGMSSNSTITMKKILEMYN-GFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSGVEHLG 252 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEE
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHhcc-cccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhhhcCCCEEEe
Confidence 99999999999877766 77777775 35677999999999999999999999999999999988999999889999999
Q ss_pred CCCCCCCCCccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhh-cC
Q 018205 244 GDMFQSIPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVA-VR 322 (359)
Q Consensus 244 ~d~~~~~p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 322 (359)
+|+++++|..|+|++++++|+|+++++.++|++++++|+| ||+++|.|...++.............+++.|+.. .+
T Consensus 253 ~d~~~~~p~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 329 (368)
T 3reo_A 253 GDMFDGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPD---HGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPG 329 (368)
T ss_dssp CCTTTCCCCCSEEEEESCGGGBCHHHHHHHHHHHHHHSCT---TCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSB
T ss_pred cCCCCCCCCCCEEEEechhhcCCHHHHHHHHHHHHHHcCC---CCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCC
Confidence 9998877767999999999999999999999999999999 9999999998876543321222334677777764 47
Q ss_pred CcccCHHHHHHHHHHcCCceeEEEEeCCceeEEEEeC
Q 018205 323 GSERTEKEWEKLFLDAGFSHFKITPVYGIKSLIEVYP 359 (359)
Q Consensus 323 g~~~t~~~~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 359 (359)
|+.|+.++|.++|+++||+.+++.+..+..++||++|
T Consensus 330 g~~rt~~e~~~ll~~AGF~~v~~~~~~~~~~vie~~k 366 (368)
T 3reo_A 330 GKERTEKEFQALAMASGFRGFKVASCAFNTYVMEFLK 366 (368)
T ss_dssp CCCCCHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred CccCCHHHHHHHHHHCCCeeeEEEEeCCCcEEEEEEe
Confidence 8999999999999999999999999999999999987
No 4
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=100.00 E-value=2e-49 Score=369.05 Aligned_cols=331 Identities=25% Similarity=0.446 Sum_probs=288.4
Q ss_pred CCccCchhhHHHHHHHHHHHHhHHHHHHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCce
Q 018205 4 IQNEGAKEMFEAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFF 83 (359)
Q Consensus 4 ~~~~~~~~~~~~~~~l~~~~~g~~~~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll 83 (359)
+++-+.....++..++++++.|++.+++|++++++|||+.|.+ +|+|++|||+++|+ +++.++||||+|++.|+|
T Consensus 11 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~l~~--g~~t~~elA~~~g~---~~~~l~rlLr~l~~~g~l 85 (348)
T 3lst_A 11 SRAGGDMDRLQSALALYEEAMGYTYAAALRAAAAVGVADHLVD--GPRTPAELAAATGT---DADALRRVLRLLAVRDVV 85 (348)
T ss_dssp -----CCCHHHHHHHHHHHHTTHHHHHHHHHHHHHTGGGGGTT--SCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSE
T ss_pred CcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhC--CCCCHHHHHHHhCc---CHHHHHHHHHHHHhCCCE
Confidence 3444555667788999999999999999999999999999986 79999999999999 789999999999999999
Q ss_pred eeecccccccCccceEeccccccccccCCCCChhhHHhhhcCcccccchhhhhHhhhcCCCchhhhhcCCCChhhhcccC
Q 018205 84 STANVQSAQQQEEEAYALTLTSKLFLKDKPYCLSPVVLTLTDQVFVNPCHFLSRWFRDNELSAYETANDGTVFWDYMAKN 163 (359)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~g~~~~~~~~~~ 163 (359)
++ . +++|++|+.++.+.++++.++.+++.+..+..++..|.+|++++++|. ++|...+ |.++|+++.++
T Consensus 86 ~~-~--------~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~-g~~~~~~~~~~ 154 (348)
T 3lst_A 86 RE-S--------DGRFALTDKGAALRSDSPVPARAGILMFTDTMFWTMSHRVASALGPER-PAFADIF-GSSLDAYFDGD 154 (348)
T ss_dssp EE-E--------TTEEEECTTTGGGSTTSSSCSHHHHHHHTSHHHHHHHHTHHHHTCTTC-CCHHHHH-SSCHHHHHTTC
T ss_pred Ee-c--------CCEEecCHHHHHHhcCCCccHHHHHHHhcCHHHHHHHHHHHHHHhcCC-ChhhHHh-CCCHHHHHHhC
Confidence 99 4 699999999998888877788888877655556788999999999887 5688888 88899999999
Q ss_pred ccHHHHHHHHHhhcccch-HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCC-----CCC
Q 018205 164 PDFNSIYNQAMASDSQLA-NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVP-----DTD 237 (359)
Q Consensus 164 ~~~~~~~~~~m~~~~~~~-~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~-----~~~ 237 (359)
++..+.|+.+|....... +.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|.++..+. ..+
T Consensus 155 ~~~~~~f~~~m~~~~~~~~~~~~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~ 232 (348)
T 3lst_A 155 AEVEALYYEGMETVSAAEHLILARAGD--FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAG 232 (348)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHSC--CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGTT
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHhCC--ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhcccccccCCCC
Confidence 999999999999887766 78888888 7788999999999999999999999999999999987555332 146
Q ss_pred CceEeeCCCCCCCCCccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhh
Q 018205 238 NLKFIAGDMFQSIPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLM 317 (359)
Q Consensus 238 ~v~~~~~d~~~~~p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (359)
+++++.+|+++++|.||+|++++++|+|+++++.++|++++++|+| ||+++|.|...++..... ....+++.|
T Consensus 233 ~v~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~Lkp---gG~l~i~e~~~~~~~~~~----~~~~~d~~~ 305 (348)
T 3lst_A 233 RWKVVEGDFLREVPHADVHVLKRILHNWGDEDSVRILTNCRRVMPA---HGRVLVIDAVVPEGNDAH----QSKEMDFMM 305 (348)
T ss_dssp SEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHTCCT---TCEEEEEECCBCSSSSCC----HHHHHHHHH
T ss_pred CeEEEecCCCCCCCCCcEEEEehhccCCCHHHHHHHHHHHHHhcCC---CCEEEEEEeccCCCCCcc----hhhhcChhh
Confidence 8999999998777799999999999999999888999999999999 999999998887654321 224567777
Q ss_pred hhhcCCcccCHHHHHHHHHHcCCceeEEEEeCCceeEEEEeC
Q 018205 318 MVAVRGSERTEKEWEKLFLDAGFSHFKITPVYGIKSLIEVYP 359 (359)
Q Consensus 318 ~~~~~g~~~t~~~~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 359 (359)
+...+++.++.++|.++|+++||+++++.+..+..++|+++|
T Consensus 306 ~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~p 347 (348)
T 3lst_A 306 LAARTGQERTAAELEPLFTAAGLRLDRVVGTSSVMSIAVGVP 347 (348)
T ss_dssp HHTTSCCCCBHHHHHHHHHHTTEEEEEEEECSSSCEEEEEEE
T ss_pred hhcCCCcCCCHHHHHHHHHHCCCceEEEEECCCCcEEEEEEe
Confidence 766788999999999999999999999999888899999986
No 5
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=100.00 E-value=3.8e-49 Score=367.80 Aligned_cols=346 Identities=48% Similarity=0.900 Sum_probs=294.0
Q ss_pred CCccCchhhHHHHHHHHHHHHhHHHHHHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCce
Q 018205 4 IQNEGAKEMFEAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFF 83 (359)
Q Consensus 4 ~~~~~~~~~~~~~~~l~~~~~g~~~~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll 83 (359)
|+....++..++..++++++.+++.+++|++++++|||+.|.+.++|.|++|||+++|++|.+++.++||||+|++.|+|
T Consensus 5 ~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~~~~t~~ela~~~~~~~~~~~~l~rlLr~L~~~gll 84 (352)
T 1fp2_A 5 INGRKPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNGFF 84 (352)
T ss_dssp ---CCSTHHHHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHHHHHTSCEEHHHHHHHHTCCGGGHHHHHHHHHHHHHTTSE
T ss_pred ccCCChHHHhhHHHHHHHHHHHHHHHHHHHHHHHCChhhhhhhcCCCccHHHHHHHhCcCCCChHHHHHHHHHHHhCCeE
Confidence 34445577888999999999999999999999999999999874359999999999999776688999999999999999
Q ss_pred eeecccccccCccceEeccccccccccCCCCChhhHHhhhcCcccccchhhhhHhhh-cCCCchhhhhcCCCChhhhccc
Q 018205 84 STANVQSAQQQEEEAYALTLTSKLFLKDKPYCLSPVVLTLTDQVFVNPCHFLSRWFR-DNELSAYETANDGTVFWDYMAK 162 (359)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~-~~~~~~~~~~~~g~~~~~~~~~ 162 (359)
++... +++.|++|+.++.|+++++.++..++.+..++.++..|.+|+++++ +|. ++|...+ |.++|+++++
T Consensus 85 ~~~~~------~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~-~~~~~~~-g~~~~~~~~~ 156 (352)
T 1fp2_A 85 EIITK------EEESYALTVASELLVRGSDLCLAPMVECVLDPTLSGSYHELKKWIYEEDL-TLFGVTL-GSGFWDFLDK 156 (352)
T ss_dssp EEEES------SSEEEEECHHHHTTSTTSSSCCHHHHHHHTCHHHHHGGGGHHHHHTCSSC-CHHHHHH-SSCHHHHHHH
T ss_pred EEecC------CCCeEeCCHHHHHHhCCCCccHHHHHHHhcCchHHHHHHHHHHHHHhcCC-ChHHHHc-CCCHHHHHHh
Confidence 98710 0489999999999998887788888877655556788999999999 665 7888888 8899999999
Q ss_pred CccHHHHHHHHHhhcccch-HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCCCCCceE
Q 018205 163 NPDFNSIYNQAMASDSQLA-NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPDTDNLKF 241 (359)
Q Consensus 163 ~~~~~~~~~~~m~~~~~~~-~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~ 241 (359)
+|+..+.|+.+|....... +. ++.+++.+++..+|||||||+|.++..+++++|+.+++++|++.+++.|++..++++
T Consensus 157 ~~~~~~~f~~~m~~~~~~~~~~-~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~ 235 (352)
T 1fp2_A 157 NPEYNTSFNDAMASDSKLINLA-LRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTY 235 (352)
T ss_dssp CHHHHHHHHHHHHHTHHHHHHH-HHTCHHHHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEE
T ss_pred ChHHHHHHHHHHHhcchhhhhH-HHhcccccccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhcccCCCcEE
Confidence 9999999999999887765 55 777732367789999999999999999999999999999999779999987778999
Q ss_pred eeCCCCCCCCCccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhc
Q 018205 242 IAGDMFQSIPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAV 321 (359)
Q Consensus 242 ~~~d~~~~~p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (359)
+.+|+++++|.||+|++++++|+|+++++.++|++++++|+|+++||+++|.+...++....+........+++.|+. .
T Consensus 236 ~~~d~~~~~p~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~-~ 314 (352)
T 1fp2_A 236 VGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC-L 314 (352)
T ss_dssp EECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGG-G
T ss_pred EeccccCCCCCccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHh-c
Confidence 999998888889999999999999999888999999999997212699999999887654321111233456776665 4
Q ss_pred CCcccCHHHHHHHHHHcCCceeEEEEeCCceeEEEEeC
Q 018205 322 RGSERTEKEWEKLFLDAGFSHFKITPVYGIKSLIEVYP 359 (359)
Q Consensus 322 ~g~~~t~~~~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 359 (359)
++..++.++|.++|+++||+.+++.+.++..++|+++|
T Consensus 315 ~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 352 (352)
T 1fp2_A 315 NGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352 (352)
T ss_dssp TCCCEEHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred cCCCCCHHHHHHHHHHCCCCeeEEEecCCCcEEEEEeC
Confidence 57889999999999999999999999988899999987
No 6
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=100.00 E-value=1.4e-48 Score=366.03 Aligned_cols=327 Identities=28% Similarity=0.509 Sum_probs=289.9
Q ss_pred CchhhHHHHHHHHHHHHhHHHHHHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 8 GAKEMFEAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 8 ~~~~~~~~~~~l~~~~~g~~~~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
......+...++++++.|++.+++|++++++|||+.|.+ +|+|++|||+++|+ +++.++|||++|++.|++++.+
T Consensus 31 ~~~~~~~~~~~l~~l~~~~~~~~~l~~a~~lglf~~l~~--g~~t~~eLA~~~g~---~~~~l~rlLr~L~~~g~l~~~~ 105 (369)
T 3gwz_A 31 GTAARAAAEETVNDILQGAWKARAIHVAVELGVPELLQE--GPRTATALAEATGA---HEQTLRRLLRLLATVGVFDDLG 105 (369)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGTT--SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSSEECS
T ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHCChhhhhcC--CCCCHHHHHHHHCc---CHHHHHHHHHHHHhCCCEEEeC
Confidence 344455668899999999999999999999999999986 79999999999999 7899999999999999999875
Q ss_pred ccccccCccce-EeccccccccccCCCCChhhHHhhhcCcccccchhhhhHhhhcCCCchhhhhcCCCChhhhcccCccH
Q 018205 88 VQSAQQQEEEA-YALTLTSKLFLKDKPYCLSPVVLTLTDQVFVNPCHFLSRWFRDNELSAYETANDGTVFWDYMAKNPDF 166 (359)
Q Consensus 88 ~~~~~~~~~~~-~~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~ 166 (359)
+++ |.+|+.++.|.++++.++..++.+...+..+..|.+|.++++++. ++|...+ |.++|+++.++++.
T Consensus 106 --------~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~-g~~~~~~~~~~~~~ 175 (369)
T 3gwz_A 106 --------HDDLFAQNALSAVLLPDPASPVATDARFQAAPWHWRAWEQLTHSVRTGE-ASFDVAN-GTSFWQLTHEDPKA 175 (369)
T ss_dssp --------STTEEECCHHHHTTSCCTTCHHHHHHHHHHSHHHHHHHHTHHHHHHHSS-CSHHHHH-SSCHHHHHHHCHHH
T ss_pred --------CCceEecCHHHHHHhcCCchhHHHHHHHcCCHHHHHHHHhHHHHHhCCC-ChhHhhc-CCCHHHHHHhCHHH
Confidence 578 999999998888887788888877655446788999999999987 5677788 88899999999999
Q ss_pred HHHHHHHHhhcccch-HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCC-------CCC
Q 018205 167 NSIYNQAMASDSQLA-NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPD-------TDN 238 (359)
Q Consensus 167 ~~~~~~~m~~~~~~~-~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~ 238 (359)
.+.|+.+|....... +.+++.++ +++..+|||||||+|.++..+++++|+++++++|++.+++.|++ .++
T Consensus 176 ~~~f~~~m~~~~~~~~~~l~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~l~~~ 253 (369)
T 3gwz_A 176 RELFNRAMGSVSLTEAGQVAAAYD--FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADR 253 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSC--CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTT
T ss_pred HHHHHHHHHHHHhhhHHHHHHhCC--CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcCcCCc
Confidence 999999999887766 78888887 77789999999999999999999999999999999778887762 578
Q ss_pred ceEeeCCCCCCCC-CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhh
Q 018205 239 LKFIAGDMFQSIP-PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLM 317 (359)
Q Consensus 239 v~~~~~d~~~~~p-~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (359)
++++.+|+++++| .||+|++++++|+|+++++.++|++++++|+| ||+++|.+...++.... . ...+++.|
T Consensus 254 v~~~~~d~~~~~p~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~p---gG~l~i~e~~~~~~~~~----~-~~~~d~~~ 325 (369)
T 3gwz_A 254 CEILPGDFFETIPDGADVYLIKHVLHDWDDDDVVRILRRIATAMKP---DSRLLVIDNLIDERPAA----S-TLFVDLLL 325 (369)
T ss_dssp EEEEECCTTTCCCSSCSEEEEESCGGGSCHHHHHHHHHHHHTTCCT---TCEEEEEEEBCCSSCCH----H-HHHHHHHH
T ss_pred eEEeccCCCCCCCCCceEEEhhhhhccCCHHHHHHHHHHHHHHcCC---CCEEEEEEeccCCCCCC----c-hhHhhHHH
Confidence 9999999987777 69999999999999999988999999999999 99999999998776432 1 34677777
Q ss_pred hhhcCCcccCHHHHHHHHHHcCCceeEEEE-eCCceeEEEEeC
Q 018205 318 MVAVRGSERTEKEWEKLFLDAGFSHFKITP-VYGIKSLIEVYP 359 (359)
Q Consensus 318 ~~~~~g~~~t~~~~~~ll~~aGf~~~~~~~-~~~~~~vi~~~~ 359 (359)
+...+++.++.++|.++|+++||+++++.+ ..+..++|+++|
T Consensus 326 ~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~svie~~~ 368 (369)
T 3gwz_A 326 LVLVGGAERSESEFAALLEKSGLRVERSLPCGAGPVRIVEIRR 368 (369)
T ss_dssp HHHHSCCCBCHHHHHHHHHTTTEEEEEEEECSSSSEEEEEEEE
T ss_pred HhhcCCccCCHHHHHHHHHHCCCeEEEEEECCCCCcEEEEEEe
Confidence 777889999999999999999999999999 578899999986
No 7
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=100.00 E-value=3.5e-48 Score=362.14 Aligned_cols=349 Identities=47% Similarity=0.858 Sum_probs=291.5
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeeccc
Q 018205 10 KEMFEAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQ 89 (359)
Q Consensus 10 ~~~~~~~~~l~~~~~g~~~~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~ 89 (359)
.+..+++..+++++.+++.+++|++++++|||+.|.+.++|+|++|||+++|++|.+++.++||||+|++.|+|++....
T Consensus 5 ~~~~~~~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~gll~~~~~~ 84 (358)
T 1zg3_A 5 SELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNILHRFLRLLTHNGFFAKTIVK 84 (358)
T ss_dssp SCCTTHHHHHHHHHTTHHHHHHHHHHHHHTHHHHHHHHTSCEEHHHHHHHTTCCTTTHHHHHHHHHHHHHTTSEEEEEEC
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHCChHhHHhhcCCCcCHHHHHHhcCCCCcchHHHHHHHHHHhhCCcEEEeccc
Confidence 34556778899999999999999999999999999874359999999999999877789999999999999999876100
Q ss_pred ccc-cC-ccceEeccccccccccCCCCChhhHHhhhcCcccccchhhhhHhhhcCC-CchhhhhcCCCChhhhcccCccH
Q 018205 90 SAQ-QQ-EEEAYALTLTSKLFLKDKPYCLSPVVLTLTDQVFVNPCHFLSRWFRDNE-LSAYETANDGTVFWDYMAKNPDF 166 (359)
Q Consensus 90 ~~~-~~-~~~~~~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~-~~~~~~~~~g~~~~~~~~~~~~~ 166 (359)
..+ .+ .++.|++|+.++.|+++++.++..++.+..++.++..|.+|+++++++. .++|...+ |.++|+++.++|+.
T Consensus 85 ~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~~-g~~~~~~~~~~p~~ 163 (358)
T 1zg3_A 85 GKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTLFECAT-GESFWDFLNKDSES 163 (358)
T ss_dssp CSSSSCCCEEEEEECHHHHTTCTTSTTCCHHHHHHHTSHHHHGGGGGHHHHHHCSCCCCHHHHHH-SSCHHHHHTSGGGH
T ss_pred ccccCCCCCCEEeCCHHHHHHhCCCCccHHHHHHHhcCcHHHHHHHHHHHHHhCCCCCChHHHHh-CCCHHHHHhcChhh
Confidence 000 00 0379999999998988887788888887665567889999999999983 26788888 88999999999999
Q ss_pred HH--HHHHHHhhcccchHHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCCCCCceEeeC
Q 018205 167 NS--IYNQAMASDSQLANLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPDTDNLKFIAG 244 (359)
Q Consensus 167 ~~--~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~ 244 (359)
.+ .|+.+|.........+++.+++.+++..+|||||||+|.++..+++++|+++++++|+|.+++.+++..+++++.+
T Consensus 164 ~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~ 243 (358)
T 1zg3_A 164 STLSMFQDAMASDSRMFKLVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGG 243 (358)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCCCSSEEEEEC
T ss_pred hhHHHHHHHHhcccHHHHHHHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhcccCCCcEEEeC
Confidence 99 9999998766433356666632256778999999999999999999999999999999889999887777999999
Q ss_pred CCCCCCCCccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCc
Q 018205 245 DMFQSIPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGS 324 (359)
Q Consensus 245 d~~~~~p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 324 (359)
|+++++|.||+|+++++||+|+++++.++|++++++|+|+++||+++|.+...++....+........+++.|+...+|+
T Consensus 244 d~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~ 323 (358)
T 1zg3_A 244 DMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGK 323 (358)
T ss_dssp CTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHSCC
T ss_pred ccCCCCCCceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccCCCC
Confidence 99887888999999999999999988899999999999711169999999988765432111123456777777667889
Q ss_pred ccCHHHHHHHHHHcCCceeEEEEeCCceeEEEEeC
Q 018205 325 ERTEKEWEKLFLDAGFSHFKITPVYGIKSLIEVYP 359 (359)
Q Consensus 325 ~~t~~~~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 359 (359)
.++.++|.++|+++||+.+++.+.++..++||++|
T Consensus 324 ~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 358 (358)
T 1zg3_A 324 ERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVYP 358 (358)
T ss_dssp CEEHHHHHHHHHHTTCCEEEEEEETTTEEEEEEEC
T ss_pred CCCHHHHHHHHHHcCCCeeEEEecCCCcEEEEEeC
Confidence 99999999999999999999999988899999987
No 8
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=100.00 E-value=1.8e-47 Score=359.06 Aligned_cols=343 Identities=28% Similarity=0.510 Sum_probs=275.7
Q ss_pred hhhHHHHHHHH--HHHHhHHHHHHHHHHHhcCcchhcccCCCC---CCHHHHHHhcCC---CCCCcccHHHHHHHHHccC
Q 018205 10 KEMFEAQAHLF--KIIYNYVSSTSLKCAVELDIPEVIHKHGRP---ITLPQLVSALEI---NPTKADGLFKLMRLLVHTG 81 (359)
Q Consensus 10 ~~~~~~~~~l~--~~~~g~~~~~~l~~a~~lglf~~L~~~~~~---~t~~ela~~~~~---~~~~~~~l~~~L~~L~~~g 81 (359)
++..+++.+++ +++.|++.+++|++|+++|||+.|.+.|+| +|++|||+++|+ +|.+++.++||||+|++.|
T Consensus 17 ~~~~~~~~~l~~~~l~~~~~~~~~l~~a~~lgif~~L~~~g~pg~~~t~~eLA~~~~~~~~~~~~~~~l~rlLr~L~~~g 96 (372)
T 1fp1_D 17 SEQTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYS 96 (372)
T ss_dssp --CCHHHHHHHHHHHHHTTHHHHHHHHHHHTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTT
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHCChHHHHHhcCCCCCCcCHHHHHHhcCCCCCCCcChHHHHHHHHHHhhCC
Confidence 34566778888 999999999999999999999999873226 999999999999 7767899999999999999
Q ss_pred ceeeecccccccCc--cceEeccccccccccCCC-CChhhHHhhhcCcccccchhhhhHhhhcCCCchhhhhcCCCChhh
Q 018205 82 FFSTANVQSAQQQE--EEAYALTLTSKLFLKDKP-YCLSPVVLTLTDQVFVNPCHFLSRWFRDNELSAYETANDGTVFWD 158 (359)
Q Consensus 82 ll~~~~~~~~~~~~--~~~~~~t~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~g~~~~~ 158 (359)
+|++.... ..++ ++.|++|+.++.|+++++ .++..++.+..++.++..|.+|+++++++..++|...+ |.++|+
T Consensus 97 ll~~~~~~--~~~g~~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~-g~~~~~ 173 (372)
T 1fp1_D 97 VLTSTTRT--IEDGGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVH-GVTKYE 173 (372)
T ss_dssp SEEEEEEE--CTTSCEEEEEEECTTGGGGSTTCTTCCCTHHHHHHTCHHHHHHHTTHHHHHHSCC---------------
T ss_pred ceEecccc--cCCCCcCCeEecCHHHHHHhCCCCCCCHHHHHHHhcCchHHHHHHHHHHHHHcCCCChhHHHh-CCCHHH
Confidence 99886100 0000 259999999998888876 67888888765556678899999999998336788888 888999
Q ss_pred hcccCccHHHHHHHHHhhcccch-HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCCCC
Q 018205 159 YMAKNPDFNSIYNQAMASDSQLA-NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPDTD 237 (359)
Q Consensus 159 ~~~~~~~~~~~~~~~m~~~~~~~-~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~ 237 (359)
++.++|+..+.|+.+|....... +.+++.++ .+++..+|||||||+|.++..+++++|+++++++|++.+++.|++.+
T Consensus 174 ~~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~-~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~ 252 (372)
T 1fp1_D 174 FMGKDKKMNQIFNKSMVDVCATEMKRMLEIYT-GFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLS 252 (372)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCT
T ss_pred HHHhCHHHHHHHHHHHHhhhHHHHHHHHHHhh-ccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHhhhhcC
Confidence 99999999999999998877666 77788775 35677899999999999999999999999999999977999998778
Q ss_pred CceEeeCCCCCCCCCccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhh
Q 018205 238 NLKFIAGDMFQSIPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLM 317 (359)
Q Consensus 238 ~v~~~~~d~~~~~p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (359)
+++++.+|+++++|.||+|++++++|+|+++++.++|++++++|+| ||+++|.|...++.............+++.|
T Consensus 253 ~v~~~~~d~~~~~~~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~ 329 (372)
T 1fp1_D 253 GIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSP---NGKVIIVEFILPEEPNTSEESKLVSTLDNLM 329 (372)
T ss_dssp TEEEEECCTTTCCCCEEEEEEESSGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEEECSSCCSSHHHHHHHHHHHHH
T ss_pred CCEEEeCCcccCCCCCCEEEEecccccCCHHHHHHHHHHHHHhcCC---CCEEEEEEeccCCCCccchHHHHHHHhhHHH
Confidence 8999999998877789999999999999999888999999999999 9999999998876543211111334567766
Q ss_pred hhhcCCcccCHHHHHHHHHHcCCceeEEEEe-CCceeEEEEeC
Q 018205 318 MVAVRGSERTEKEWEKLFLDAGFSHFKITPV-YGIKSLIEVYP 359 (359)
Q Consensus 318 ~~~~~g~~~t~~~~~~ll~~aGf~~~~~~~~-~~~~~vi~~~~ 359 (359)
+...++..++.++|.++|+++||+++++.+. .+..++||++|
T Consensus 330 ~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~vie~~~ 372 (372)
T 1fp1_D 330 FITVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFYK 372 (372)
T ss_dssp HHHHSCCCEEHHHHHHHHHHTTCSEEEEEEEETTTEEEEEEEC
T ss_pred HhccCCccCCHHHHHHHHHHCCCceEEEEEcCCCCeEEEEEeC
Confidence 6555788899999999999999999999984 55259999987
No 9
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=100.00 E-value=7.4e-47 Score=350.01 Aligned_cols=318 Identities=26% Similarity=0.417 Sum_probs=280.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeeccccccc
Q 018205 14 EAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQ 93 (359)
Q Consensus 14 ~~~~~l~~~~~g~~~~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~ 93 (359)
.+...+++++.|++.+++|++++++|||+.|.+ +|.|++|||+++|+ +++.++|||++|++.|++++.+
T Consensus 7 ~~~~~l~~~~~~~~~~~~l~~~~~lgi~~~l~~--~~~t~~ela~~~~~---~~~~l~r~Lr~L~~~g~l~~~~------ 75 (334)
T 2ip2_A 7 AAARNLIQVVTGEWKSRCVYVATRLGLADLIES--GIDSDETLAAAVGS---DAERIHRLMRLLVAFEIFQGDT------ 75 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHT--TCCSHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET------
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCcHHHHhC--CCCCHHHHHHHhCc---CHHHHHHHHHHHHhCCceEecC------
Confidence 567899999999999999999999999999986 79999999999999 7899999999999999999875
Q ss_pred CccceEeccccccccccCCCCChhhHHhhhcCcccccchhhhhHhhhcCCCchhhhhcCCCChhhhcccCccHHHHHHHH
Q 018205 94 QEEEAYALTLTSKLFLKDKPYCLSPVVLTLTDQVFVNPCHFLSRWFRDNELSAYETANDGTVFWDYMAKNPDFNSIYNQA 173 (359)
Q Consensus 94 ~~~~~~~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 173 (359)
++.|++|+.++.++ +++.++.+++.+..+... ..|.+|.++++++. ++|...+ |.++|+++.++++..+.|+.+
T Consensus 76 --~~~y~~t~~s~~l~-~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~-~~~~~~~-g~~~~~~~~~~~~~~~~f~~~ 149 (334)
T 2ip2_A 76 --RDGYANTPTSHLLR-DVEGSFRDMVLFYGEEFH-AAWTPACEALLSGT-PGFELAF-GEDFYSYLKRCPDAGRRFLLA 149 (334)
T ss_dssp --TTEEEECHHHHTTS-SSTTCSHHHHHHHTTHHH-HHTTTHHHHHHHCC-CHHHHHH-SSCHHHHHHHCHHHHHHHHHH
T ss_pred --CCeEecCHHHHHHh-CCCccHHHHHHHhcCchh-hHHHHHHHHHhcCC-Chhhhhc-CCCHHHHHhhChHHHHHHHHH
Confidence 58999999999888 777788888877755444 78999999999987 6788888 889999999999999999999
Q ss_pred Hhhcccch-HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCC-------CCCceEeeCC
Q 018205 174 MASDSQLA-NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPD-------TDNLKFIAGD 245 (359)
Q Consensus 174 m~~~~~~~-~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~d 245 (359)
| ...... +.+++.++ +++ .+|||||||+|.++..+++++|+.+++++|++.+++.|++ .++++++.+|
T Consensus 150 m-~~~~~~~~~~~~~~~--~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d 225 (334)
T 2ip2_A 150 M-KASNLAFHEIPRLLD--FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGD 225 (334)
T ss_dssp H-GGGHHHHHHHHHHSC--CTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHHTTSEEEEESC
T ss_pred H-HHHHHHHHHHHHhCC--CCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCC
Confidence 9 766655 77888887 666 9999999999999999999999999999999668887763 4689999999
Q ss_pred CCCCCCC-ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCc
Q 018205 246 MFQSIPP-ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGS 324 (359)
Q Consensus 246 ~~~~~p~-~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 324 (359)
+++++|. ||+|++++++|+|++++..++|++++++|+| ||.++|.+...++.... .....+++.|+...+|.
T Consensus 226 ~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~----~~~~~~~~~~~~~~~~~ 298 (334)
T 2ip2_A 226 MLQEVPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAG---DGRVVVIERTISASEPS----PMSVLWDVHLFMACAGR 298 (334)
T ss_dssp TTTCCCSSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCT---TCEEEEEECCBCSSSCC----HHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCCCCEEEEchhccCCCHHHHHHHHHHHHHhcCC---CCEEEEEEeccCCCCCc----chhHHhhhHhHhhCCCc
Confidence 9877765 9999999999999999888999999999999 99999999887765332 22345677776666788
Q ss_pred ccCHHHHHHHHHHcCCceeEEEEeCCceeEEEEeC
Q 018205 325 ERTEKEWEKLFLDAGFSHFKITPVYGIKSLIEVYP 359 (359)
Q Consensus 325 ~~t~~~~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 359 (359)
.++.++|.++|+++||+++++.+.++..++|+++|
T Consensus 299 ~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 333 (334)
T 2ip2_A 299 HRTTEEVVDLLGRGGFAVERIVDLPMETRMIVAAR 333 (334)
T ss_dssp CCBHHHHHHHHHHTTEEEEEEEEETTTEEEEEEEE
T ss_pred CCCHHHHHHHHHHCCCceeEEEECCCCCEEEEEEe
Confidence 99999999999999999999999988899999975
No 10
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=100.00 E-value=6e-48 Score=357.00 Aligned_cols=315 Identities=24% Similarity=0.377 Sum_probs=274.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCcc
Q 018205 17 AHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEE 96 (359)
Q Consensus 17 ~~l~~~~~g~~~~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~ 96 (359)
..+++++.|++.+++|++|+++|||+.|.+ +|+|++|||+++|+ +++.++|||++|++.|++++.+ +
T Consensus 7 ~~l~~~~~g~~~~~~l~~a~~lglf~~l~~--g~~t~~elA~~~~~---~~~~l~rlLr~l~~~gl~~~~~--------~ 73 (332)
T 3i53_A 7 HIGLRALADLATPMAVRVAATLRVADHIAA--GHRTAAEIASAAGA---HADSLDRLLRHLVAVGLFTRDG--------Q 73 (332)
T ss_dssp SSCHHHHTCCHHHHHHHHHHHHTHHHHHHT--TCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEECT--------T
T ss_pred HHHHHHHHhhHHHHHHHHHHHcChHHHHhc--CCCCHHHHHHHHCc---CHHHHHHHHHHHHhCCcEEecC--------C
Confidence 467899999999999999999999999986 79999999999999 7899999999999999999875 6
Q ss_pred ceEeccccccccccCCCCChhhHHhhhcCcccc-cchhhhhHhhhcCCCchhhhhcCCCChhhhcccCccHHHHHHHHHh
Q 018205 97 EAYALTLTSKLFLKDKPYCLSPVVLTLTDQVFV-NPCHFLSRWFRDNELSAYETANDGTVFWDYMAKNPDFNSIYNQAMA 175 (359)
Q Consensus 97 ~~~~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~ 175 (359)
+.|.+|+.++.+.++++.++..++.+......+ ..|.+|.++++++. ++|...+ |.++|+++.++++..+.|+.+|.
T Consensus 74 ~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~-g~~~~~~~~~~~~~~~~f~~~m~ 151 (332)
T 3i53_A 74 GVYGLTEFGEQLRDDHAAGKRKWLDMNSAVGRGDLGFVELAHSIRTGQ-PAYPVRY-GTSFWEDLGSDPVLSASFDTLMS 151 (332)
T ss_dssp SBEEECTTGGGGSTTCTTCCHHHHCTTSHHHHHGGGGGGHHHHHHHSS-CSHHHHH-SSCHHHHHHHCHHHHHHHHHHHH
T ss_pred CeEEcCHhHHHHhcCCchhHHHHHHHcCCHhHHHHHHHHhHHHHhcCC-CHHHHhh-CCCHHHHHHhCHHHHHHHHHHHH
Confidence 899999999988888777788887765433334 78999999999988 5688888 88899999999999999999998
Q ss_pred hcccch-HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCC-------CCCceEeeCCCC
Q 018205 176 SDSQLA-NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPD-------TDNLKFIAGDMF 247 (359)
Q Consensus 176 ~~~~~~-~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~d~~ 247 (359)
...... +.+++.++ +++..+|||||||+|.++..+++++|+.+++++|++.+++.|++ .++++++.+|++
T Consensus 152 ~~~~~~~~~~~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 229 (332)
T 3i53_A 152 HHLELDYTGIAAKYD--WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFF 229 (332)
T ss_dssp HHHHHHHTTGGGSSC--CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTT
T ss_pred HhHHhhHHHHHHhCC--CCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCC
Confidence 876554 56666666 56678999999999999999999999999999999778887762 478999999998
Q ss_pred CCCC-CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCccc
Q 018205 248 QSIP-PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSER 326 (359)
Q Consensus 248 ~~~p-~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 326 (359)
+++| +||+|++++++|+|++++..++|++++++|+| ||+++|.|...++. .. ...+++.|+...+++.+
T Consensus 230 ~~~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~-~~------~~~~d~~~~~~~~~~~~ 299 (332)
T 3i53_A 230 DPLPAGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGS---GGVVLVIEAVAGDE-HA------GTGMDLRMLTYFGGKER 299 (332)
T ss_dssp SCCCCSCSEEEEESCGGGSCHHHHHHHHHHHHHHHTT---TCEEEEEECCCC----C------CHHHHHHHHHHHSCCCC
T ss_pred CCCCCCCcEEEEehhhccCCHHHHHHHHHHHHHhcCC---CCEEEEEeecCCCC-Cc------cHHHHHHHHhhCCCCCC
Confidence 7777 69999999999999999889999999999999 99999999887765 11 13567777766788999
Q ss_pred CHHHHHHHHHHcCCceeEEEEeCCceeEEEEeC
Q 018205 327 TEKEWEKLFLDAGFSHFKITPVYGIKSLIEVYP 359 (359)
Q Consensus 327 t~~~~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 359 (359)
+.++|.++|+++||+++++.+.+. .++|++++
T Consensus 300 t~~e~~~ll~~aGf~~~~~~~~~~-~~vie~r~ 331 (332)
T 3i53_A 300 SLAELGELAAQAGLAVRAAHPISY-VSIVEMTA 331 (332)
T ss_dssp CHHHHHHHHHHTTEEEEEEEECSS-SEEEEEEE
T ss_pred CHHHHHHHHHHCCCEEEEEEECCC-cEEEEEee
Confidence 999999999999999999999988 99999875
No 11
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=100.00 E-value=3.8e-45 Score=341.91 Aligned_cols=327 Identities=15% Similarity=0.198 Sum_probs=264.0
Q ss_pred chhhHHHHHHHHHHHHhHHHHHHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecc
Q 018205 9 AKEMFEAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANV 88 (359)
Q Consensus 9 ~~~~~~~~~~l~~~~~g~~~~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~ 88 (359)
+.+..+++.++++++.|++.+++|++++++|||+.|.+.++|+|++|||+++|+ +++.++|||++|++.|+|++.
T Consensus 9 ~~~~~~a~~~l~~l~~g~~~~~~l~~a~~lgifd~L~~~~~~~t~~eLA~~~g~---~~~~l~rlLr~l~~~g~l~~~-- 83 (363)
T 3dp7_A 9 QCTAAEAQRLAQEIAFGPVVFQVSRLMLKFGIFQLLSGKREGYTLQEISGRTGL---TRYAAQVLLEASLTIGTILLE-- 83 (363)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHTCTTCBCHHHHHHHHTC---CHHHHHHHHHHHHHHTSEEEE--
T ss_pred chhHHHHHHHHHHHHhhHHHHHHHHHHHHhCHHHHHHhcCCCCCHHHHHHHhCc---CHHHHHHHHHHHhhCCCeEec--
Confidence 345677888999999999999999999999999999874579999999999999 789999999999999999886
Q ss_pred cccccCccceEeccccccccccCCCCChhhHHhhhcCcccccchhhhhHhhhcCCCchhhhhcCC--CChhhhcccCccH
Q 018205 89 QSAQQQEEEAYALTLTSKLFLKDKPYCLSPVVLTLTDQVFVNPCHFLSRWFRDNELSAYETANDG--TVFWDYMAKNPDF 166 (359)
Q Consensus 89 ~~~~~~~~~~~~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~g--~~~~~~~~~~~~~ 166 (359)
+++|++|+.++.|+++++.+ .++.+. ....++.|.+|++++++|.+ ++...+ | .++|+++.++|+.
T Consensus 84 -------~~~y~~t~~s~~L~~~~~~~--~~~~~~-~~~~~~~~~~L~~~lr~g~~-~~~~~~-g~~~~~~~~~~~~~~~ 151 (363)
T 3dp7_A 84 -------EDRYVLAKAGWFLLNDKMAR--VNMEFN-HDVNYQGLFHLEEALLNGRP-EGLKVF-GEWPTIYEGLSQLPEQ 151 (363)
T ss_dssp -------TTEEEECHHHHHHHHCHHHH--HHHHHH-HHTTHHHHTTHHHHHHHSSC-GGGGGT-CCCSSHHHHGGGSCHH
T ss_pred -------CCEEecccchHHhhCCCccc--chheee-cHHhhhhHHHHHHHHhcCCC-cccccc-CchHhHHHHHhhCHHH
Confidence 58999999999888776322 233332 34568899999999999874 566667 5 6899999999987
Q ss_pred HHH----HHHHHhhcccchHHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCC-------
Q 018205 167 NSI----YNQAMASDSQLANLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPD------- 235 (359)
Q Consensus 167 ~~~----~~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------- 235 (359)
.+. |+.+|..... ..+++.+. ..+..+|||||||+|.++..+++++|+++++++|+|.+++.|++
T Consensus 152 ~~~~~~~f~~~~~~~~~--~~~l~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~ 227 (363)
T 3dp7_A 152 VQKSWFGFDHFYSDQSF--GKALEIVF--SHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSG 227 (363)
T ss_dssp HHHHHHHHHHHTTCCCC--HHHHHHHG--GGCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHhhhhhH--HHHHHHhc--ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhcCc
Confidence 763 5555554322 34455443 25678999999999999999999999999999999778877662
Q ss_pred CCCceEeeCCCCCC---CC-CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchH-HHHHH
Q 018205 236 TDNLKFIAGDMFQS---IP-PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQ-LTEAK 310 (359)
Q Consensus 236 ~~~v~~~~~d~~~~---~p-~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~-~~~~~ 310 (359)
.++++++.+|+++. +| .||+|++++++|+|+++++.++|++++++|+| ||+++|.|...+....... +....
T Consensus 228 ~~~v~~~~~d~~~~~~~~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~~~~~~~~ 304 (363)
T 3dp7_A 228 SERIHGHGANLLDRDVPFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGK---DSKVYIMETLWDRQRYETASYCLTQ 304 (363)
T ss_dssp GGGEEEEECCCCSSSCCCCCCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCT---TCEEEEEECCTTSCSSHHHHHHHHH
T ss_pred ccceEEEEccccccCCCCCCCcCEEEEechhhhCCHHHHHHHHHHHHHhcCC---CcEEEEEeeccCCccccchhhHHHH
Confidence 25899999999874 66 59999999999999999999999999999999 9999999988876543221 00111
Q ss_pred HhhhhhhhhhcCCcccCHHHHHHHHHHcCCceeEEEEeCC-ceeEEEEeC
Q 018205 311 LLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPVYG-IKSLIEVYP 359 (359)
Q Consensus 311 ~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~~~~~~~-~~~vi~~~~ 359 (359)
...++.++...+++.++.++|.++|+++||+++++.+..+ ..++|+++|
T Consensus 305 ~~~~~~~~~~~~~~~~t~~e~~~ll~~AGf~~v~~~~~~g~~~svi~~~~ 354 (363)
T 3dp7_A 305 ISLYFTAMANGNSKMFHSDDLIRCIENAGLEVEEIQDNIGLGHSILQCRL 354 (363)
T ss_dssp HHHHHHHSSCSSCCSCCHHHHHHHHHTTTEEESCCCCCBTTTBEEEEEEE
T ss_pred hhhhHHhhhCCCCcccCHHHHHHHHHHcCCeEEEEEeCCCCCceEEEEee
Confidence 1223333444567889999999999999999999997754 589999875
No 12
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=100.00 E-value=3.6e-44 Score=337.01 Aligned_cols=324 Identities=21% Similarity=0.322 Sum_probs=275.0
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeeccccc
Q 018205 12 MFEAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSA 91 (359)
Q Consensus 12 ~~~~~~~l~~~~~g~~~~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~ 91 (359)
..+....+++++.+++.+++|++++++|||+.|.. +|.|++|||+++|+ +++.++|||++|++.|++++.+
T Consensus 13 ~~~~~~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~--~~~t~~eLA~~~g~---~~~~l~r~Lr~L~~~Gll~~~~---- 83 (374)
T 1qzz_A 13 TDQDLDVLLKNLGNLVTPMALRVAATLRLVDHLLA--GADTLAGLADRTDT---HPQALSRLVRHLTVVGVLEGGE---- 83 (374)
T ss_dssp CHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHHHT--TCCSHHHHHHHHTC---CHHHHHHHHHHHHHTTSEECCC----
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHcChHHHHhC--CCCCHHHHHHHhCc---CHHHHHHHHHHHhhCCCEEEeC----
Confidence 34567789999999999999999999999999975 79999999999999 7899999999999999999864
Q ss_pred ccCccc--eEeccccccccccCCCCChhhHHhhhcCcccc-cchhhhhHhhhcCCCchhhhhcCCCChhhhcccCccHHH
Q 018205 92 QQQEEE--AYALTLTSKLFLKDKPYCLSPVVLTLTDQVFV-NPCHFLSRWFRDNELSAYETANDGTVFWDYMAKNPDFNS 168 (359)
Q Consensus 92 ~~~~~~--~~~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 168 (359)
++ .|++|+.++.+.++++.++..++.+..++..+ ..|..|.++++++. ++|...+ |.++|+++..+++...
T Consensus 84 ----~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~-g~~~~~~~~~~~~~~~ 157 (374)
T 1qzz_A 84 ----KQGRPLRPTRLGMLLADGHPAQQRAWLDLNGAVSHADLAFTGLLDVVRTGR-PAYAGRY-GRPFWEDLSADVALAD 157 (374)
T ss_dssp ----C-CCCCEECTTGGGGSTTCTTCHHHHHCTTSHHHHHHGGGGGHHHHHHHSC-CSHHHHH-SSCHHHHHHHCHHHHH
T ss_pred ----CCCeEEEEChHHHhhcCCCcccHHHHHHHcCChhhHHHHHHHHHHHHhcCC-Chhhhhh-CCCHHHHHhhChHHHH
Confidence 56 99999999999888887888887766433345 78899999999987 5677788 8899999999999999
Q ss_pred HHHHHHhhcccch-HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCC-------CCCce
Q 018205 169 IYNQAMASDSQLA-NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPD-------TDNLK 240 (359)
Q Consensus 169 ~~~~~m~~~~~~~-~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~ 240 (359)
.|+.+|....... +.+++.++ +.+..+|||||||+|.++..+++.+|+++++++|++.+++.|++ .++++
T Consensus 158 ~f~~~~~~~~~~~~~~~~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~ 235 (374)
T 1qzz_A 158 SFDALMSCDEDLAYEAPADAYD--WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVT 235 (374)
T ss_dssp HHHHTCGGGSTTTTHHHHHTSC--CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEE
T ss_pred HHHHHHHHhhHhHHHHHHHhCC--CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCCCCceE
Confidence 9999998777665 78888887 67789999999999999999999999999999999668877662 34899
Q ss_pred EeeCCCCCCCCC-ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee--ecCCCCcchHHHHHHHhhhhhh
Q 018205 241 FIAGDMFQSIPP-ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDI--VINEKKEDAQLTEAKLLYDMLM 317 (359)
Q Consensus 241 ~~~~d~~~~~p~-~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~--~~~~~~~~~~~~~~~~~~~~~~ 317 (359)
++.+|+++++|. ||+|++++++|+|++++..++|++++++|+| ||.++|.+. ..++.... .....+++.+
T Consensus 236 ~~~~d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~~----~~~~~~~~~~ 308 (374)
T 1qzz_A 236 VAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEP---GGRLLVLDRADVEGDGADR----FFSTLLDLRM 308 (374)
T ss_dssp EEECCTTSCCSCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEECCH-------H----HHHHHHHHHH
T ss_pred EEeCCCCCcCCCCCCEEEEeccccCCCHHHHHHHHHHHHHhcCC---CcEEEEEechhhcCCCCCc----chhhhcchHH
Confidence 999999877775 9999999999999998888999999999999 999999998 65443211 2234566666
Q ss_pred hhhcCCcccCHHHHHHHHHHcCCceeEEEEeCCce-----eEEEEeC
Q 018205 318 MVAVRGSERTEKEWEKLFLDAGFSHFKITPVYGIK-----SLIEVYP 359 (359)
Q Consensus 318 ~~~~~g~~~t~~~~~~ll~~aGf~~~~~~~~~~~~-----~vi~~~~ 359 (359)
+...++..++.++|.++|+++||+++++...+... ++|+++|
T Consensus 309 ~~~~~~~~~~~~~~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~ 355 (374)
T 1qzz_A 309 LTFMGGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFTA 355 (374)
T ss_dssp HHHHSCCCCCHHHHHHHHHTTTEEEEEEEEECCSSCSSCEEEEEEEE
T ss_pred HHhCCCcCCCHHHHHHHHHHCCCceEEEEECCCCcccCCcEEEEEEE
Confidence 66667889999999999999999999999987776 8998864
No 13
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=100.00 E-value=2e-43 Score=330.23 Aligned_cols=320 Identities=23% Similarity=0.403 Sum_probs=275.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc
Q 018205 16 QAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE 95 (359)
Q Consensus 16 ~~~l~~~~~g~~~~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~ 95 (359)
..++++++.+++.+++|++++++|||+.|.. +|.|++|||+++|+ +++.+.|||++|++.|+|++.+
T Consensus 20 ~~~~~~~~~~~~~~~~l~~~~~l~i~~~l~~--~~~t~~ela~~~~~---~~~~l~r~L~~L~~~g~~~~~~-------- 86 (360)
T 1tw3_A 20 ALRTLIRLGSLHTPMVVRTAATLRLVDHILA--GARTVKALAARTDT---RPEALLRLIRHLVAIGLLEEDA-------- 86 (360)
T ss_dssp HHHHHHHHHCSHHHHHHHHHHHTTHHHHHHT--TCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE--------
T ss_pred hHHHHHHHHhHHHHHHHHHHHHhCHHHHHhC--CCCCHHHHHHHhCc---CHHHHHHHHHHHHHCCCEEecC--------
Confidence 4678999999999999999999999999975 79999999999999 7899999999999999999865
Q ss_pred cceEeccccccccccCCCCChhhHHhhhcCcc-cccchhhhhHhhhcCCCchhhhhcCCCChhhhcccCccHHHHHHHHH
Q 018205 96 EEAYALTLTSKLFLKDKPYCLSPVVLTLTDQV-FVNPCHFLSRWFRDNELSAYETANDGTVFWDYMAKNPDFNSIYNQAM 174 (359)
Q Consensus 96 ~~~~~~t~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m 174 (359)
+++|++|+.++.++++++.++..++.+...+. .+..|.+|.+.+++|. +++...+ |.++|+++..+++....|...|
T Consensus 87 ~g~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~-g~~~~~~~~~~p~~~~~f~~~~ 164 (360)
T 1tw3_A 87 PGEFVPTEVGELLADDHPAAQRAWHDLTQAVARADISFTRLPDAIRTGR-PTYESIY-GKPFYEDLAGRPDLRASFDSLL 164 (360)
T ss_dssp TTEEEECTTGGGGSTTSTTCHHHHTCTTSHHHHHGGGGGGHHHHHHHCC-CCHHHHH-SSCHHHHHHTCHHHHHHHHHHH
T ss_pred CCeEEeCHHHHHHhcCCchhHHHHHHHhcCchhHHHHHHHHHHHHHcCC-CHHHHhc-CCCHHHHHHhChHHHHHHHHHH
Confidence 68999999999999888878888876654333 5678899999999987 4577777 8899999999999999999999
Q ss_pred hhcccch-HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCC-------CCCceEeeCCC
Q 018205 175 ASDSQLA-NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPD-------TDNLKFIAGDM 246 (359)
Q Consensus 175 ~~~~~~~-~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~d~ 246 (359)
....... +.+++.++ +.+..+|||||||+|.++..+++.+|+++++++|++.+++.|++ .++++++.+|+
T Consensus 165 ~~~~~~~~~~l~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 242 (360)
T 1tw3_A 165 ACDQDVAFDAPAAAYD--WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDF 242 (360)
T ss_dssp TTTTTTTTHHHHHHSC--CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred HHHHHHhHHHHHHhCC--CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCCCCceEEEeCCC
Confidence 8877766 78888887 67788999999999999999999999999999999668877652 34899999999
Q ss_pred CCCCCC-ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee-cCCCCcchHHHHHHHhhhhhhhhhcCCc
Q 018205 247 FQSIPP-ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIV-INEKKEDAQLTEAKLLYDMLMMVAVRGS 324 (359)
Q Consensus 247 ~~~~p~-~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 324 (359)
++++|. ||+|++++++|+|++++..++|++++++|+| ||.+++.+.. .++.... .....+++.++...++.
T Consensus 243 ~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 315 (360)
T 1tw3_A 243 FEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEP---GGRILIHERDDLHENSFN----EQFTELDLRMLVFLGGA 315 (360)
T ss_dssp TSCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEE---EEEEEEEECCBCGGGCCS----HHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCccEEEEcccccCCCHHHHHHHHHHHHHhcCC---CcEEEEEEEeccCCCCCc----chhhhccHHHhhhcCCc
Confidence 877775 9999999999999998888999999999999 9999999987 5543221 12234566666556788
Q ss_pred ccCHHHHHHHHHHcCCceeEEEEeCCc-----eeEEEEeC
Q 018205 325 ERTEKEWEKLFLDAGFSHFKITPVYGI-----KSLIEVYP 359 (359)
Q Consensus 325 ~~t~~~~~~ll~~aGf~~~~~~~~~~~-----~~vi~~~~ 359 (359)
.++.++|.++|+++||+++++.+.+.. .++|+++|
T Consensus 316 ~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~ 355 (360)
T 1tw3_A 316 LRTREKWDGLAASAGLVVEEVRQLPSPTIPYDLSLLVLAP 355 (360)
T ss_dssp CCBHHHHHHHHHHTTEEEEEEEEEECSSSSCEEEEEEEEE
T ss_pred CCCHHHHHHHHHHCCCeEEEEEeCCCCcccCccEEEEEEe
Confidence 999999999999999999999988665 78999875
No 14
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=100.00 E-value=4.4e-42 Score=318.06 Aligned_cols=314 Identities=21% Similarity=0.302 Sum_probs=266.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCcc
Q 018205 17 AHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEE 96 (359)
Q Consensus 17 ~~l~~~~~g~~~~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~ 96 (359)
..+++++.|++.+++|++++++|||+.|.+ +|.|++|||+++|+ +++.++|||++|++.|+|++. +
T Consensus 8 ~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~--~~~t~~ela~~~~~---~~~~l~r~L~~L~~~g~l~~~---------~ 73 (335)
T 2r3s_A 8 ALFFNTVNAYQRSAAIKAAVELNVFTAISQ--GIESSQSLAQKCQT---SERGMRMLCDYLVIIGFMTKQ---------A 73 (335)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHTTHHHHHTT--SEECHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE---------T
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChHHHHhc--CCCCHHHHHHHhCC---CchHHHHHHHHHHhcCCeEec---------C
Confidence 578999999999999999999999999986 79999999999999 789999999999999999875 5
Q ss_pred ceEeccccc-cccccCCCCChhhHHhhhcCcccccchhhhhHhhhcCCCchhhhhcCCCChhhhcccCccHHHHHHHHHh
Q 018205 97 EAYALTLTS-KLFLKDKPYCLSPVVLTLTDQVFVNPCHFLSRWFRDNELSAYETANDGTVFWDYMAKNPDFNSIYNQAMA 175 (359)
Q Consensus 97 ~~~~~t~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~ 175 (359)
+.|++|+.+ ..+.++++.++..++.+..++..+..|.+|.++++++.+ +|. + |+++.++++....|...|.
T Consensus 74 ~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~------~-~~~~~~~~~~~~~~~~~~~ 145 (335)
T 2r3s_A 74 EGYRLTSDSAMFLDRQSKFYVGDAIEFLLSPMITNGFNDLTAAVLKGGT-AIS------S-EGTLSPEHPVWVQFAKAMS 145 (335)
T ss_dssp TEEEECHHHHHHTCTTSTTCCGGGHHHHTCHHHHGGGTTHHHHHHHTSC-CST------T-TGGGSTTCTHHHHHHHHSG
T ss_pred CEEecCHHHHHHhccCCcHHHHHHHHHhcchhhHHHHHhHHHHHhcCCC-CCC------C-cccccCCHHHHHHHHHHHH
Confidence 999999999 678888777888888877543567889999999999873 232 2 7888888999999999888
Q ss_pred hcccch-HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCC-------CCCceEeeCCCC
Q 018205 176 SDSQLA-NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPD-------TDNLKFIAGDMF 247 (359)
Q Consensus 176 ~~~~~~-~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~d~~ 247 (359)
...... ..+++.+++.+.+..+|||||||+|.++..+++.+|+.+++++|++.+++.|++ .++++++.+|++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 225 (335)
T 2r3s_A 146 PMMANPAQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAF 225 (335)
T ss_dssp GGGHHHHHHHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTT
T ss_pred HHHhhhHHHHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEecccc
Confidence 876655 677888772116788999999999999999999999999999999987777663 357999999997
Q ss_pred C-CCCC-ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhc-CCc
Q 018205 248 Q-SIPP-ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAV-RGS 324 (359)
Q Consensus 248 ~-~~p~-~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~ 324 (359)
+ ++|. ||+|++++++|++++++..++|++++++|+| ||.+++.+...++....+ .....+++.|+... ++.
T Consensus 226 ~~~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 299 (335)
T 2r3s_A 226 EVDYGNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAV---EGKVIVFDFIPNSDRITP---PDAAAFSLVMLATTPNGD 299 (335)
T ss_dssp TSCCCSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEECCCCTTSSCS---HHHHHHHHHHHHHSSSCC
T ss_pred cCCCCCCCcEEEEcchhccCCHHHHHHHHHHHHHhCCC---CcEEEEEeecCCCCcCCc---hHHHHHHHHHHeeCCCCC
Confidence 6 5664 9999999999999999889999999999999 999999998877643322 22345666666555 788
Q ss_pred ccCHHHHHHHHHHcCCceeEEEEeCCceeEEEEe
Q 018205 325 ERTEKEWEKLFLDAGFSHFKITPVYGIKSLIEVY 358 (359)
Q Consensus 325 ~~t~~~~~~ll~~aGf~~~~~~~~~~~~~vi~~~ 358 (359)
.++.++|.++|+++||+.+++.+..+..++++++
T Consensus 300 ~~t~~~~~~ll~~aGf~~~~~~~~~~~~~~i~~~ 333 (335)
T 2r3s_A 300 AYTFAEYESMFSNAGFSHSQLHSLPTTQQQVIVA 333 (335)
T ss_dssp CCCHHHHHHHHHHTTCSEEEEECCTTSSSEEEEE
T ss_pred cCCHHHHHHHHHHCCCCeeeEEECCCCceeEEEe
Confidence 9999999999999999999999988777777664
No 15
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=100.00 E-value=1.3e-41 Score=317.05 Aligned_cols=311 Identities=16% Similarity=0.251 Sum_probs=256.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccC
Q 018205 15 AQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQ 94 (359)
Q Consensus 15 ~~~~l~~~~~g~~~~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~ 94 (359)
....+++++.|++.+++|++++++|||+.|. +|+|++|||+++|+ +++.++||||+|++.|+|++.
T Consensus 24 ~p~~l~~~~~~~~~~~~l~~a~~lgif~~l~---~~~t~~elA~~~~~---~~~~l~rlLr~L~~~gll~~~-------- 89 (352)
T 3mcz_A 24 SVVDLVKLSDQYRQSAILHYAVADKLFDLTQ---TGRTPAEVAASFGM---VEGKAAILLHALAALGLLTKE-------- 89 (352)
T ss_dssp SHHHHHHHHHTHHHHHHHHHHHHTTHHHHTT---SCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE--------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCChHHHhC---CCCCHHHHHHHhCc---ChHHHHHHHHHHHHCCCeEec--------
Confidence 3445999999999999999999999999996 39999999999999 789999999999999999987
Q ss_pred ccceEecccccc-ccccCCCCChhhHHhhhcCcccccchhhhhHhhhcCCCchhhhhcCCCChhhhcccCccHHHHHHHH
Q 018205 95 EEEAYALTLTSK-LFLKDKPYCLSPVVLTLTDQVFVNPCHFLSRWFRDNELSAYETANDGTVFWDYMAKNPDFNSIYNQA 173 (359)
Q Consensus 95 ~~~~~~~t~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 173 (359)
+++|++|+.++ .+.++.+.++..++.+. ...+..|.+|.+++++|.+.+|... .++..+++..+.|..+
T Consensus 90 -~~~y~~t~~s~~~l~~~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~g~~~~f~~~-------~~~~~~~~~~~~f~~~ 159 (352)
T 3mcz_A 90 -GDAFRNTALTERYLTTTSADYIGPIVEHQ--YLQWDNWPRLGEILRSEKPLAFQQE-------SRFAHDTRARDAFNDA 159 (352)
T ss_dssp -TTEEEECHHHHHHHSTTCTTCCHHHHHHH--HTTTTTGGGHHHHHTCSSCCTTSHH-------HHTTTCHHHHHHHHHH
T ss_pred -CCeeecCHHHHhhccCCChhhHHHHHHHh--HHHHHHHHHHHHHHhCCCCCCcccc-------cccccCHHHHHHHHHH
Confidence 48999999997 55667777777777654 2467889999999999886544322 1235678888999999
Q ss_pred HhhcccchHHHHHhcccccCC-CCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCC-------CCCceEeeCC
Q 018205 174 MASDSQLANLIVKDCQPIFQG-LGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPD-------TDNLKFIAGD 245 (359)
Q Consensus 174 m~~~~~~~~~~~~~~~~~~~~-~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~d 245 (359)
|.........+++.++ +.+ ..+|||||||+|.++..+++++|+.+++++|++.+++.+++ .++++++.+|
T Consensus 160 m~~~~~~~~~~l~~~~--~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d 237 (352)
T 3mcz_A 160 MVRLSQPMVDVVSELG--VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKN 237 (352)
T ss_dssp HHHHHHHHHHHHHTCG--GGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGGGEEEEECC
T ss_pred HHhhhhhHHHHHHhCC--CcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCCceEEEeCC
Confidence 9873221137788887 555 89999999999999999999999999999999878876652 3579999999
Q ss_pred CCCC---CCC-ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhc
Q 018205 246 MFQS---IPP-ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAV 321 (359)
Q Consensus 246 ~~~~---~p~-~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (359)
+++. .+. ||+|++++++|+|+++++.++|++++++|+| ||+++|.+...++....+ .....+++.|+...
T Consensus 238 ~~~~~~~~~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~---~~~~~~~~~~~~~~ 311 (352)
T 3mcz_A 238 LLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKP---GGALLILTMTMNDDRVTP---ALSADFSLHMMVNT 311 (352)
T ss_dssp TTCGGGGTTCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEE---EEEEEEEEECCCTTSSSS---HHHHHHHHHHHHHS
T ss_pred cccCcccCCCCccEEEEecccccCCHHHHHHHHHHHHHHcCC---CCEEEEEEeccCCCCCCC---chHHHhhHHHHhhC
Confidence 9874 454 9999999999999999899999999999999 999999999887764332 23346777776544
Q ss_pred -CCcccCHHHHHHHHHHcCCceeEEEEeCCceeEEEEeC
Q 018205 322 -RGSERTEKEWEKLFLDAGFSHFKITPVYGIKSLIEVYP 359 (359)
Q Consensus 322 -~g~~~t~~~~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 359 (359)
++..++.++|.++|+++||++++.. .+..+++.++|
T Consensus 312 ~~~~~~t~~e~~~ll~~aGf~~~~~~--~g~~~l~~a~k 348 (352)
T 3mcz_A 312 NHGELHPTPWIAGVVRDAGLAVGERS--IGRYTLLIGQR 348 (352)
T ss_dssp TTCCCCCHHHHHHHHHHTTCEEEEEE--ETTEEEEEEEC
T ss_pred CCCCcCCHHHHHHHHHHCCCceeeec--cCceEEEEEec
Confidence 6889999999999999999998843 35577777654
No 16
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=100.00 E-value=2.8e-41 Score=315.53 Aligned_cols=311 Identities=20% Similarity=0.359 Sum_probs=261.6
Q ss_pred hhhHHHHHHHHHHHH-hHHHHHHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecc
Q 018205 10 KEMFEAQAHLFKIIY-NYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANV 88 (359)
Q Consensus 10 ~~~~~~~~~l~~~~~-g~~~~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~ 88 (359)
.+..++..++++++. |++.+++|++++++|||+.|.+ +|.|++|||+++|+ +++.++|||++|++.|+|++.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~l~~a~~lgif~~L~~--~~~t~~eLA~~~g~---~~~~l~rlLr~L~~~gll~~~-- 97 (359)
T 1x19_A 25 NDLLNYYHRANELVFKGLIEFSCMKAAIELDLFSHMAE--GPKDLATLAADTGS---VPPRLEMLLETLRQMRVINLE-- 97 (359)
T ss_dssp CHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTHHHHHTT--CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE--
T ss_pred cccCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHcC--CCCCHHHHHHHhCc---ChHHHHHHHHHHHhCCCeEee--
Confidence 345667788889886 8999999999999999999986 79999999999999 789999999999999999987
Q ss_pred cccccCccceEeccccc-cccccCCC---CChhhHHhhhcCcccccchhhhhHhhhcCCCchhhhhcCCCChhhhcccCc
Q 018205 89 QSAQQQEEEAYALTLTS-KLFLKDKP---YCLSPVVLTLTDQVFVNPCHFLSRWFRDNELSAYETANDGTVFWDYMAKNP 164 (359)
Q Consensus 89 ~~~~~~~~~~~~~t~~~-~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~g~~~~~~~~~~~ 164 (359)
+++|++|+.+ ..+.++++ .++.+++.+. ....+..|.+|+++++++.+ |+++.++|
T Consensus 98 -------~~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~l~~g~~------------~~~~~~~p 157 (359)
T 1x19_A 98 -------DGKWSLTEFADYMFSPTPKEPNLHQTPVAKAM-AFLADDFYMGLSQAVRGQKN------------FKGQVPYP 157 (359)
T ss_dssp -------TTEEEECHHHHHHSSSSCSBTTBCCHHHHHHH-HHHHHHTGGGHHHHHTTSCC------------CCCSSCSS
T ss_pred -------CCeEecCHHHHHHhcCCCCCccccHHHHHHHH-HHHHHHHHHHHHHHHhcCCC------------CcccccCc
Confidence 4799999964 57777776 6788877765 33567889999999998752 56677888
Q ss_pred c---HHHHHHHHHhhccc-ch-HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCC----
Q 018205 165 D---FNSIYNQAMASDSQ-LA-NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPD---- 235 (359)
Q Consensus 165 ~---~~~~~~~~m~~~~~-~~-~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---- 235 (359)
+ ..+.|...|..... .. +.+++.++ +++..+|||||||+|.++..+++++|+.+++++|++.+++.|++
T Consensus 158 ~~~~~~~~f~~~m~~~~~~~~~~~l~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~ 235 (359)
T 1x19_A 158 PVTREDNLYFEEIHRSNAKFAIQLLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAE 235 (359)
T ss_dssp CCSHHHHHHHHHHHHTTCHHHHHHHHHHCC--CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhccchhHHHHHHhcC--CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHh
Confidence 8 89999999998877 66 78888887 67789999999999999999999999999999999668887762
Q ss_pred ---CCCceEeeCCCCC-CCCCccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHH
Q 018205 236 ---TDNLKFIAGDMFQ-SIPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKL 311 (359)
Q Consensus 236 ---~~~v~~~~~d~~~-~~p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~ 311 (359)
.++++++.+|+++ +++.+|+|++++++|+|++++..++|++++++|+| ||.++|.+...++..... . ..
T Consensus 236 ~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~-~---~~ 308 (359)
T 1x19_A 236 KGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRS---GGRLLILDMVIDDPENPN-F---DY 308 (359)
T ss_dssp TTCTTTEEEEECCTTTSCCCCCSEEEEESCGGGSCHHHHHHHHHHHHTTCCT---TCEEEEEEECCCCTTSCC-H---HH
T ss_pred cCCCCCEEEEeCccccCCCCCCCEEEEechhccCCHHHHHHHHHHHHHhcCC---CCEEEEEecccCCCCCch-H---HH
Confidence 4579999999976 56668999999999999998889999999999999 999999998876652211 1 11
Q ss_pred hhhhhhhh-hcCCcc----cCHHHHHHHHHHcCCceeEEEEeCCceeEEEEeC
Q 018205 312 LYDMLMMV-AVRGSE----RTEKEWEKLFLDAGFSHFKITPVYGIKSLIEVYP 359 (359)
Q Consensus 312 ~~~~~~~~-~~~g~~----~t~~~~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 359 (359)
.+ .++. ..++.. ++.++|.++|+++||+.+++.+.+ ..++++++|
T Consensus 309 ~~--~~~~~~~~g~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~-~~~vi~a~k 358 (359)
T 1x19_A 309 LS--HYILGAGMPFSVLGFKEQARYKEILESLGYKDVTMVRKY-DHLLVQAVK 358 (359)
T ss_dssp HH--HHGGGGGSSCCCCCCCCGGGHHHHHHHHTCEEEEEEEET-TEEEEEEEC
T ss_pred HH--HHHHhcCCCCcccCCCCHHHHHHHHHHCCCceEEEEecC-CceEEEEeC
Confidence 22 2322 234556 899999999999999999999988 788898875
No 17
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=99.85 E-value=2e-20 Score=166.17 Aligned_cols=161 Identities=14% Similarity=0.176 Sum_probs=119.8
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHC--CCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCC-CCCCccEEEEcc
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAF--PGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQ-SIPPADAFFFKA 260 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~-~~p~~D~i~~~~ 260 (359)
.+++.+|||||||+|.++..+++++ |+++++|+|+++ |++.|++ ..+|+++++|+.+ +++.||+|+++.
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~ 147 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNF 147 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEES
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeee
Confidence 4577899999999999999999985 678999999965 9887762 4689999999966 566799999999
Q ss_pred hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhh--------------hcCCccc
Q 018205 261 IFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMV--------------AVRGSER 326 (359)
Q Consensus 261 vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~g~~~ 326 (359)
++|++++++..++|++++++|+| ||.+++.|............ ......++.... ..--..+
T Consensus 148 ~l~~~~~~~~~~~l~~i~~~Lkp---GG~lii~e~~~~~~~~~~~~-~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~~ 223 (261)
T 4gek_A 148 TLQFLEPSERQALLDKIYQGLNP---GGALVLSEKFSFEDAKVGEL-LFNMHHDFKRANGYSELEISQKRSMLENVMLTD 223 (261)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEBCCSSHHHHHH-HHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCB
T ss_pred eeeecCchhHhHHHHHHHHHcCC---CcEEEEEeccCCCCHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHhhhcccccCC
Confidence 99999988888899999999999 99999999877654321100 000011110000 0001246
Q ss_pred CHHHHHHHHHHcCCceeEEEEe-CCceeEEE
Q 018205 327 TEKEWEKLFLDAGFSHFKITPV-YGIKSLIE 356 (359)
Q Consensus 327 t~~~~~~ll~~aGf~~~~~~~~-~~~~~vi~ 356 (359)
|.+++.++|+++||+.++++.- .++.+++-
T Consensus 224 s~~~~~~~L~~AGF~~ve~~fq~~nF~~~iA 254 (261)
T 4gek_A 224 SVETHKARLHKAGFEHSELWFQCFNFGSLVA 254 (261)
T ss_dssp CHHHHHHHHHHHTCSEEEEEEEETTEEEEEE
T ss_pred CHHHHHHHHHHcCCCeEEEEEEeccEEEEEE
Confidence 8999999999999999888654 44445443
No 18
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=99.81 E-value=9.9e-19 Score=152.75 Aligned_cols=171 Identities=18% Similarity=0.220 Sum_probs=126.0
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC----CCCCceEeeCCCCC-CCC-CccE
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP----DTDNLKFIAGDMFQ-SIP-PADA 255 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~----~~~~v~~~~~d~~~-~~p-~~D~ 255 (359)
.++..+. ...+..+|||||||+|.++..+++.+|+.+++++|++. +++.|+ ...+++++.+|+.+ +.+ .||+
T Consensus 34 ~~~~~~~-~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~ 112 (234)
T 3dtn_A 34 VSVSIAS-VDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDM 112 (234)
T ss_dssp HHHHTCC-CSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEEE
T ss_pred HHHHHhh-cCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCceE
Confidence 4444443 23456899999999999999999999999999999954 777665 23489999999965 333 5999
Q ss_pred EEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhh-------------hhhhcC
Q 018205 256 FFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDML-------------MMVAVR 322 (359)
Q Consensus 256 i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~ 322 (359)
|++..++|++++++..++|++++++|+| ||.+++.+...+.......... ..+.... ......
T Consensus 113 v~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (234)
T 3dtn_A 113 VVSALSIHHLEDEDKKELYKRSYSILKE---SGIFINADLVHGETAFIENLNK-TIWRQYVENSGLTEEEIAAGYERSKL 188 (234)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEECBCSSHHHHHHHH-HHHHHHHHTSSCCHHHHHTTC----C
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCC---CcEEEEEEecCCCChhhhhHHH-HHHHHHHHhcCCCHHHHHHHHHhccc
Confidence 9999999999988877899999999999 9999999988765432110000 0000000 000012
Q ss_pred CcccCHHHHHHHHHHcCCceeEEEEeCCceeEEEEe
Q 018205 323 GSERTEKEWEKLFLDAGFSHFKITPVYGIKSLIEVY 358 (359)
Q Consensus 323 g~~~t~~~~~~ll~~aGf~~~~~~~~~~~~~vi~~~ 358 (359)
...++.+++.++|+++||+.+++.......+++..+
T Consensus 189 ~~~~~~~~~~~ll~~aGF~~v~~~~~~~~~~~~~~~ 224 (234)
T 3dtn_A 189 DKDIEMNQQLNWLKEAGFRDVSCIYKYYQFAVMFGR 224 (234)
T ss_dssp CCCCBHHHHHHHHHHTTCEEEEEEEEETTEEEEEEE
T ss_pred ccccCHHHHHHHHHHcCCCceeeeeeecceeEEEEE
Confidence 345789999999999999999998887776666554
No 19
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=99.74 E-value=3e-17 Score=141.79 Aligned_cols=154 Identities=19% Similarity=0.242 Sum_probs=122.2
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeeccc-ccccCCC------CCCceEeeCCCCC-CCC-
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQ-SIP- 251 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~-~~p- 251 (359)
..+++.+. ..+..+|||+|||+|.++..+++.. |..+++++|++. +++.++. ..++++..+|+.+ +++
T Consensus 27 ~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~ 104 (219)
T 3dh0_A 27 EKVLKEFG--LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPD 104 (219)
T ss_dssp HHHHHHHT--CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCS
T ss_pred HHHHHHhC--CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCC
Confidence 45666665 5677899999999999999999996 788999999954 8877762 3579999999965 343
Q ss_pred -CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHH
Q 018205 252 -PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKE 330 (359)
Q Consensus 252 -~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~ 330 (359)
.||+|+++.++|++++. ..+|++++++|+| ||.+++.+.......... .....++.++
T Consensus 105 ~~fD~v~~~~~l~~~~~~--~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~----------------~~~~~~~~~~ 163 (219)
T 3dh0_A 105 NTVDFIFMAFTFHELSEP--LKFLEELKRVAKP---FAYLAIIDWKKEERDKGP----------------PPEEVYSEWE 163 (219)
T ss_dssp SCEEEEEEESCGGGCSSH--HHHHHHHHHHEEE---EEEEEEEEECSSCCSSSC----------------CGGGSCCHHH
T ss_pred CCeeEEEeehhhhhcCCH--HHHHHHHHHHhCC---CeEEEEEEecccccccCC----------------chhcccCHHH
Confidence 39999999999999765 5699999999999 899999887665442111 0013468999
Q ss_pred HHHHHHHcCCceeEEEEeCCceeEEEEe
Q 018205 331 WEKLFLDAGFSHFKITPVYGIKSLIEVY 358 (359)
Q Consensus 331 ~~~ll~~aGf~~~~~~~~~~~~~vi~~~ 358 (359)
|.++|+++||+++++.........+.++
T Consensus 164 ~~~~l~~~Gf~~~~~~~~~~~~~~~~~~ 191 (219)
T 3dh0_A 164 VGLILEDAGIRVGRVVEVGKYCFGVYAM 191 (219)
T ss_dssp HHHHHHHTTCEEEEEEEETTTEEEEEEE
T ss_pred HHHHHHHCCCEEEEEEeeCCceEEEEEE
Confidence 9999999999999999887766666554
No 20
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=99.74 E-value=3.4e-17 Score=141.53 Aligned_cols=169 Identities=15% Similarity=0.225 Sum_probs=119.3
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC--CCCceEeeCCCCC-CCC-CccEE
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD--TDNLKFIAGDMFQ-SIP-PADAF 256 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~--~~~v~~~~~d~~~-~~p-~~D~i 256 (359)
..+++.+. ..+..+|||||||+|.++..+++. +.+++++|++. +++.+++ ..+++++.+|+.+ +.+ .||+|
T Consensus 35 ~~~l~~~~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~fD~v 110 (220)
T 3hnr_A 35 EDILEDVV--NKSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTI 110 (220)
T ss_dssp HHHHHHHH--HTCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCCSCCSEE
T ss_pred HHHHHHhh--ccCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCCCCeEEE
Confidence 35555555 446789999999999999999987 67999999954 8877663 2489999999965 333 59999
Q ss_pred EEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhh--hhhhcCCcccCHHHHHHH
Q 018205 257 FFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDML--MMVAVRGSERTEKEWEKL 334 (359)
Q Consensus 257 ~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~t~~~~~~l 334 (359)
++.+++|++++++...+|++++++|+| ||.+++.++..................... .........++.++|.++
T Consensus 111 ~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (220)
T 3hnr_A 111 VSTYAFHHLTDDEKNVAIAKYSQLLNK---GGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTI 187 (220)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHSCT---TCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHH
T ss_pred EECcchhcCChHHHHHHHHHHHHhcCC---CCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHH
Confidence 999999999988777799999999999 999999987665432111000000000000 000011234589999999
Q ss_pred HHHcCCceeEEEEeCCceeEEEEe
Q 018205 335 FLDAGFSHFKITPVYGIKSLIEVY 358 (359)
Q Consensus 335 l~~aGf~~~~~~~~~~~~~vi~~~ 358 (359)
|+++||+++.+... ....++.+.
T Consensus 188 l~~aGf~v~~~~~~-~~~w~~~~~ 210 (220)
T 3hnr_A 188 FENNGFHVTFTRLN-HFVWVMEAT 210 (220)
T ss_dssp HHHTTEEEEEEECS-SSEEEEEEE
T ss_pred HHHCCCEEEEeecc-ceEEEEeeh
Confidence 99999987666554 455555443
No 21
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=99.73 E-value=4.3e-17 Score=140.47 Aligned_cols=161 Identities=20% Similarity=0.222 Sum_probs=112.9
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC--CCCceEeeCCCCCCCC--CccEE
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD--TDNLKFIAGDMFQSIP--PADAF 256 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~--~~~v~~~~~d~~~~~p--~~D~i 256 (359)
..+++.+. ...+..+|||||||+|.++..+++. +.+++++|++. +++.++. ..+++++.+|+.+..+ .||+|
T Consensus 35 ~~~~~~l~-~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~v 111 (218)
T 3ou2_A 35 PAALERLR-AGNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDAV 111 (218)
T ss_dssp HHHHHHHT-TTTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEEE
T ss_pred HHHHHHHh-cCCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeEE
Confidence 34455444 2445679999999999999999998 67999999954 8877763 3689999999966433 49999
Q ss_pred EEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcC------CcccCHHH
Q 018205 257 FFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVR------GSERTEKE 330 (359)
Q Consensus 257 ~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------g~~~t~~~ 330 (359)
++++++|++++++...+|++++++|+| ||.+++.+...+.......+.......-.... ..+ ...++.++
T Consensus 112 ~~~~~l~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 187 (218)
T 3ou2_A 112 FFAHWLAHVPDDRFEAFWESVRSAVAP---GGVVEFVDVTDHERRLEQQDDSEPEVAVRRTL-QDGRSFRIVKVFRSPAE 187 (218)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEECCCC------------CEEEEEC-TTSCEEEEECCCCCHHH
T ss_pred EEechhhcCCHHHHHHHHHHHHHHcCC---CeEEEEEeCCCCccccchhhhcccccceeeec-CCcchhhHhhcCCCHHH
Confidence 999999999988778899999999999 99999998776432211000000000000000 011 12459999
Q ss_pred HHHHHHHcCCceeEEEEeC
Q 018205 331 WEKLFLDAGFSHFKITPVY 349 (359)
Q Consensus 331 ~~~ll~~aGf~~~~~~~~~ 349 (359)
|.++|+++||++......+
T Consensus 188 ~~~~l~~aGf~v~~~~~~~ 206 (218)
T 3ou2_A 188 LTERLTALGWSCSVDEVHP 206 (218)
T ss_dssp HHHHHHHTTEEEEEEEEET
T ss_pred HHHHHHHCCCEEEeeeccc
Confidence 9999999999955554443
No 22
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=99.73 E-value=2.8e-17 Score=146.11 Aligned_cols=155 Identities=18% Similarity=0.334 Sum_probs=119.4
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC----CCCceEeeCCCCC-CCC--Cc
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD----TDNLKFIAGDMFQ-SIP--PA 253 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~----~~~v~~~~~d~~~-~~p--~~ 253 (359)
..+++.++ ..+..+|||||||+|.++..+++.+ +.+++++|++. +++.|++ ..+++++.+|+.+ +++ .|
T Consensus 45 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f 121 (266)
T 3ujc_A 45 KKILSDIE--LNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNF 121 (266)
T ss_dssp HHHTTTCC--CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCE
T ss_pred HHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcE
Confidence 34455554 5667899999999999999999987 77999999955 7776652 2789999999965 444 49
Q ss_pred cEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHH
Q 018205 254 DAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEK 333 (359)
Q Consensus 254 D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ 333 (359)
|+|++..++|++++++...+|++++++|+| ||.+++.+.......... .. .... ....+...++.++|.+
T Consensus 122 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~---~~--~~~~--~~~~~~~~~~~~~~~~ 191 (266)
T 3ujc_A 122 DLIYSRDAILALSLENKNKLFQKCYKWLKP---TGTLLITDYCATEKENWD---DE--FKEY--VKQRKYTLITVEEYAD 191 (266)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEEESCGGGCC---HH--HHHH--HHHHTCCCCCHHHHHH
T ss_pred EEEeHHHHHHhcChHHHHHHHHHHHHHcCC---CCEEEEEEeccCCcccch---HH--HHHH--HhcCCCCCCCHHHHHH
Confidence 999999999999877788999999999999 999999998776522111 00 0000 1112345679999999
Q ss_pred HHHHcCCceeEEEEeC
Q 018205 334 LFLDAGFSHFKITPVY 349 (359)
Q Consensus 334 ll~~aGf~~~~~~~~~ 349 (359)
+|+++||+++++....
T Consensus 192 ~l~~~Gf~~~~~~~~~ 207 (266)
T 3ujc_A 192 ILTACNFKNVVSKDLS 207 (266)
T ss_dssp HHHHTTCEEEEEEECH
T ss_pred HHHHcCCeEEEEEeCC
Confidence 9999999999887653
No 23
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=99.73 E-value=9e-18 Score=144.72 Aligned_cols=166 Identities=16% Similarity=0.194 Sum_probs=117.2
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCC-CCC-
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQ-SIP- 251 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~-~~p- 251 (359)
..+++.++ ..+. +|||||||+|.++..+++. ++.+++++|++. +++.|+. .++++++.+|+.+ +++
T Consensus 34 ~~~~~~~~--~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 109 (219)
T 3dlc_A 34 ENIINRFG--ITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIED 109 (219)
T ss_dssp HHHHHHHC--CCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCT
T ss_pred HHHHHhcC--CCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCc
Confidence 34455554 3333 9999999999999999998 788999999954 8877662 3589999999966 444
Q ss_pred -CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHH-HHHh-hhhhhhhhcCCcccCH
Q 018205 252 -PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTE-AKLL-YDMLMMVAVRGSERTE 328 (359)
Q Consensus 252 -~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~g~~~t~ 328 (359)
.||+|++..++|++++. ..+|++++++|+| ||.+++.+.......... ... .... ..+..........++.
T Consensus 110 ~~~D~v~~~~~l~~~~~~--~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (219)
T 3dlc_A 110 NYADLIVSRGSVFFWEDV--ATAFREIYRILKS---GGKTYIGGGFGNKELRDS-ISAEMIRKNPDWKEFNRKNISQENV 183 (219)
T ss_dssp TCEEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEECCSSHHHHHH-HHHHHHHHCTTHHHHHHHHSSHHHH
T ss_pred ccccEEEECchHhhccCH--HHHHHHHHHhCCC---CCEEEEEeccCcHHHHHH-HHHHHHHhHHHHHhhhhhccccCCH
Confidence 49999999999999655 5699999999999 899988875543321110 000 0000 0000000112345588
Q ss_pred HHHHHHHHHcCCceeEEEEeCCceeEEEE
Q 018205 329 KEWEKLFLDAGFSHFKITPVYGIKSLIEV 357 (359)
Q Consensus 329 ~~~~~ll~~aGf~~~~~~~~~~~~~vi~~ 357 (359)
++|.++|+++||+.+++........++..
T Consensus 184 ~~~~~~l~~aGf~~v~~~~~~~~~~~~~~ 212 (219)
T 3dlc_A 184 ERFQNVLDEIGISSYEIILGDEGFWIIIS 212 (219)
T ss_dssp HHHHHHHHHHTCSSEEEEEETTEEEEEEB
T ss_pred HHHHHHHHHcCCCeEEEEecCCceEEEEe
Confidence 99999999999999999887665555443
No 24
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=99.72 E-value=6.3e-18 Score=146.76 Aligned_cols=160 Identities=18% Similarity=0.206 Sum_probs=114.6
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC-----CCCceEeeCCCCC-CCC--CccEEEEcchhcc
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD-----TDNLKFIAGDMFQ-SIP--PADAFFFKAIFHA 264 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~-----~~~v~~~~~d~~~-~~p--~~D~i~~~~vl~~ 264 (359)
+..+|||+|||+|.++..+++..+ +++++|++ .+++.|++ ..+++++.+|+.+ +++ .||+|++..++|+
T Consensus 38 ~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~ 115 (227)
T 1ve3_A 38 KRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVH 115 (227)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGG
T ss_pred CCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchHh
Confidence 478999999999999999999876 89999995 48877763 3789999999966 444 4999999999777
Q ss_pred CCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcch--HHHHHHHhhhhhhhhhcC------------------Cc
Q 018205 265 FVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDA--QLTEAKLLYDMLMMVAVR------------------GS 324 (359)
Q Consensus 265 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~------------------g~ 324 (359)
+..++..+++++++++|+| ||.+++.+.......... .................. ..
T Consensus 116 ~~~~~~~~~l~~~~~~L~~---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (227)
T 1ve3_A 116 FEPLELNQVFKEVRRVLKP---SGKFIMYFTDLRELLPRLKESLVVGQKYWISKVIPDQEERTVVIEFKSEQDSFRVRFN 192 (227)
T ss_dssp CCHHHHHHHHHHHHHHEEE---EEEEEEEEECHHHHGGGCCC---------CCEEEEETTTTEEEEEC-----CCEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCC---CcEEEEEecChHHHHHHHHhhhhcccceeecccccCccccEEEEEeccchhhheeehh
Confidence 7767778899999999999 899999877533211100 000000000000000000 11
Q ss_pred ccCHHHHHHHHHHcCCceeEEEEeCCceeEEEEeC
Q 018205 325 ERTEKEWEKLFLDAGFSHFKITPVYGIKSLIEVYP 359 (359)
Q Consensus 325 ~~t~~~~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 359 (359)
.++ .+|.++|+++||+.+++...+....+|+.+|
T Consensus 193 ~w~-~~~~~~l~~~GF~~v~~~~~~~~~~~i~~~~ 226 (227)
T 1ve3_A 193 VWG-KTGVELLAKLYFTKEAEEKVGNYSYLTVYNP 226 (227)
T ss_dssp CCC-HHHHHHHHTTTEEEEEEEEETTTEEEEEEEE
T ss_pred hhc-hHHHHHHHHHhhhHHHHHHhCCceeEEeeCC
Confidence 222 4899999999999999999988888998876
No 25
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=99.72 E-value=8.7e-17 Score=141.02 Aligned_cols=141 Identities=16% Similarity=0.289 Sum_probs=110.5
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCCCCCceEeeCCCCC---CCC--CccEEEEcchhccC
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPDTDNLKFIAGDMFQ---SIP--PADAFFFKAIFHAF 265 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~~v~~~~~d~~~---~~p--~~D~i~~~~vl~~~ 265 (359)
+.+..+|||||||+|.++..+++. +.+++++|++. +++.+++. ++++.+|+.+ +++ .||+|++.+++|++
T Consensus 39 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~--~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~ 114 (240)
T 3dli_A 39 FKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK--FNVVKSDAIEYLKSLPDKYLDGVMISHFVEHL 114 (240)
T ss_dssp TTTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT--SEEECSCHHHHHHTSCTTCBSEEEEESCGGGS
T ss_pred hcCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh--cceeeccHHHHhhhcCCCCeeEEEECCchhhC
Confidence 456789999999999999999998 66899999955 88887654 8999999854 444 49999999999999
Q ss_pred CchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCceeEE
Q 018205 266 VDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKI 345 (359)
Q Consensus 266 ~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~~ 345 (359)
++++...+|++++++|+| ||.+++..+..... ... .... ........++.+++.++|+++||+++++
T Consensus 115 ~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~------~~~---~~~~-~~~~~~~~~~~~~l~~~l~~aGf~~~~~ 181 (240)
T 3dli_A 115 DPERLFELLSLCYSKMKY---SSYIVIESPNPTSL------YSL---INFY-IDPTHKKPVHPETLKFILEYLGFRDVKI 181 (240)
T ss_dssp CGGGHHHHHHHHHHHBCT---TCCEEEEEECTTSH------HHH---HHHT-TSTTCCSCCCHHHHHHHHHHHTCEEEEE
T ss_pred CcHHHHHHHHHHHHHcCC---CcEEEEEeCCcchh------HHH---HHHh-cCccccccCCHHHHHHHHHHCCCeEEEE
Confidence 988888899999999999 89999877653221 111 1111 1112345678999999999999999888
Q ss_pred EEeC
Q 018205 346 TPVY 349 (359)
Q Consensus 346 ~~~~ 349 (359)
....
T Consensus 182 ~~~~ 185 (240)
T 3dli_A 182 EFFE 185 (240)
T ss_dssp EEEC
T ss_pred EEec
Confidence 7764
No 26
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=99.72 E-value=5e-17 Score=144.30 Aligned_cols=152 Identities=15% Similarity=0.312 Sum_probs=115.2
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCC-CCC--
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQ-SIP-- 251 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~-~~p-- 251 (359)
..+++.+. ..+..+|||||||+|.++..+++..+ +++++|++. +++.|++ ..+++++.+|+.+ +++
T Consensus 27 ~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~ 102 (260)
T 1vl5_A 27 AKLMQIAA--LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDE 102 (260)
T ss_dssp HHHHHHHT--CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTT
T ss_pred HHHHHHhC--CCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCC
Confidence 56666666 55778999999999999999999864 899999955 8877652 3579999999965 454
Q ss_pred CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhh-h-hhcCCcccCHH
Q 018205 252 PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLM-M-VAVRGSERTEK 329 (359)
Q Consensus 252 ~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~t~~ 329 (359)
.||+|+++.++|++++. ..+|++++++|+| ||.+++.+...+.... . . .++.... . .......++.+
T Consensus 103 ~fD~V~~~~~l~~~~d~--~~~l~~~~r~Lkp---gG~l~~~~~~~~~~~~---~-~--~~~~~~~~~~~~~~~~~~~~~ 171 (260)
T 1vl5_A 103 RFHIVTCRIAAHHFPNP--ASFVSEAYRVLKK---GGQLLLVDNSAPENDA---F-D--VFYNYVEKERDYSHHRAWKKS 171 (260)
T ss_dssp CEEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEEEBCSSHH---H-H--HHHHHHHHHHCTTCCCCCBHH
T ss_pred CEEEEEEhhhhHhcCCH--HHHHHHHHHHcCC---CCEEEEEEcCCCCCHH---H-H--HHHHHHHHhcCccccCCCCHH
Confidence 49999999999999876 4699999999999 9999998877655421 1 1 1111111 1 11233567899
Q ss_pred HHHHHHHHcCCceeEEEEe
Q 018205 330 EWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 330 ~~~~ll~~aGf~~~~~~~~ 348 (359)
+|.++|+++||+++.+...
T Consensus 172 ~~~~~l~~aGf~~~~~~~~ 190 (260)
T 1vl5_A 172 DWLKMLEEAGFELEELHCF 190 (260)
T ss_dssp HHHHHHHHHTCEEEEEEEE
T ss_pred HHHHHHHHCCCeEEEEEEe
Confidence 9999999999998877665
No 27
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=99.71 E-value=1.6e-16 Score=142.02 Aligned_cols=156 Identities=19% Similarity=0.188 Sum_probs=119.3
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCC-CCC-
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQ-SIP- 251 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~-~~p- 251 (359)
..+++.++ ..+..+|||||||+|.++..+++.+ +.+++++|++. +++.+++ .++++++.+|+.+ +++
T Consensus 51 ~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 127 (273)
T 3bus_A 51 DEMIALLD--VRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFED 127 (273)
T ss_dssp HHHHHHSC--CCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCT
T ss_pred HHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCC
Confidence 45666666 5677899999999999999999987 68999999954 7776652 3579999999965 444
Q ss_pred -CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHH
Q 018205 252 -PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKE 330 (359)
Q Consensus 252 -~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~ 330 (359)
.||+|++..++|++++. ..+|++++++|+| ||.+++.+.......... .....+........+..++.++
T Consensus 128 ~~fD~v~~~~~l~~~~~~--~~~l~~~~~~L~p---gG~l~i~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 198 (273)
T 3bus_A 128 ASFDAVWALESLHHMPDR--GRALREMARVLRP---GGTVAIADFVLLAPVEGA----KKEAVDAFRAGGGVLSLGGIDE 198 (273)
T ss_dssp TCEEEEEEESCTTTSSCH--HHHHHHHHTTEEE---EEEEEEEEEEESSCCCHH----HHHHHHHHHHHHTCCCCCCHHH
T ss_pred CCccEEEEechhhhCCCH--HHHHHHHHHHcCC---CeEEEEEEeeccCCCChh----HHHHHHHHHhhcCccCCCCHHH
Confidence 49999999999999776 5699999999999 999999998765433221 1111111111123456789999
Q ss_pred HHHHHHHcCCceeEEEEeC
Q 018205 331 WEKLFLDAGFSHFKITPVY 349 (359)
Q Consensus 331 ~~~ll~~aGf~~~~~~~~~ 349 (359)
|.++|+++||+++++...+
T Consensus 199 ~~~~l~~aGf~~~~~~~~~ 217 (273)
T 3bus_A 199 YESDVRQAELVVTSTVDIS 217 (273)
T ss_dssp HHHHHHHTTCEEEEEEECH
T ss_pred HHHHHHHcCCeEEEEEECc
Confidence 9999999999999887663
No 28
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=99.69 E-value=6e-17 Score=144.02 Aligned_cols=162 Identities=19% Similarity=0.166 Sum_probs=112.9
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-CCCceEeeCCCCC-CCC-CccEEEEcc-hhccCC
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-TDNLKFIAGDMFQ-SIP-PADAFFFKA-IFHAFV 266 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-~~~v~~~~~d~~~-~~p-~~D~i~~~~-vl~~~~ 266 (359)
.++..+|||||||+|.++..+++.. .+++++|++. +++.|++ ..+++++.+|+.+ +.+ .||+|++.. ++|+++
T Consensus 48 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~ 125 (263)
T 3pfg_A 48 SPKAASLLDVACGTGMHLRHLADSF--GTVEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLA 125 (263)
T ss_dssp CTTCCEEEEETCTTSHHHHHHTTTS--SEEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCCSCCEEEEEECTTGGGGSC
T ss_pred CCCCCcEEEeCCcCCHHHHHHHHcC--CeEEEEECCHHHHHHHHhhCCCCEEEECChHHCCccCCcCEEEEcCchhhhcC
Confidence 3456899999999999999999884 5899999954 8887763 4589999999965 333 499999998 999996
Q ss_pred c-hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchH------------HH--------HHHHhhhhhhhhh-cC--
Q 018205 267 D-EDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQ------------LT--------EAKLLYDMLMMVA-VR-- 322 (359)
Q Consensus 267 ~-~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~------------~~--------~~~~~~~~~~~~~-~~-- 322 (359)
+ ++...+|++++++|+| ||.+++.....++...... +. .....++..+... .+
T Consensus 126 ~~~~~~~~l~~~~~~L~p---gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (263)
T 3pfg_A 126 GQAELDAALERFAAHVLP---DGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRG 202 (263)
T ss_dssp HHHHHHHHHHHHHHTEEE---EEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTE
T ss_pred CHHHHHHHHHHHHHhcCC---CcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEecCCCc
Confidence 4 5667899999999999 8888875433322110000 00 0000000111000 01
Q ss_pred ---------CcccCHHHHHHHHHHcCCceeEEEEeCCceeEEEEe
Q 018205 323 ---------GSERTEKEWEKLFLDAGFSHFKITPVYGIKSLIEVY 358 (359)
Q Consensus 323 ---------g~~~t~~~~~~ll~~aGf~~~~~~~~~~~~~vi~~~ 358 (359)
...++.++|.++|+++||+++++........++.++
T Consensus 203 ~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~~~~~va~ 247 (263)
T 3pfg_A 203 ITHHEESHRITLFTREQYERAFTAAGLSVEFMPGGPSGRGLFTGL 247 (263)
T ss_dssp EEEEEEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEE
T ss_pred EEEEEEEEEEEeecHHHHHHHHHHCCCEEEEeeCCCCCceeEEEe
Confidence 235689999999999999999987776665555554
No 29
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=99.69 E-value=1.9e-16 Score=138.88 Aligned_cols=152 Identities=20% Similarity=0.354 Sum_probs=114.9
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCC-CCC--
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQ-SIP-- 251 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~-~~p-- 251 (359)
..+++.+. ..+..+|||||||+|.++..+++..+ +++++|++. +++.+++ ..+++++.+|+.+ +++
T Consensus 11 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 86 (239)
T 1xxl_A 11 GLMIKTAE--CRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDD 86 (239)
T ss_dssp HHHHHHHT--CCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTT
T ss_pred chHHHHhC--cCCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCC
Confidence 45566666 66789999999999999999998864 899999954 8877652 3579999999955 444
Q ss_pred CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhh-hh-hhcCCcccCHH
Q 018205 252 PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDML-MM-VAVRGSERTEK 329 (359)
Q Consensus 252 ~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~g~~~t~~ 329 (359)
.||+|++.+++|++++. ..+|++++++|+| ||.+++.+...+.... ... +.... .. .......++.+
T Consensus 87 ~fD~v~~~~~l~~~~~~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~ 155 (239)
T 1xxl_A 87 SFDIITCRYAAHHFSDV--RKAVREVARVLKQ---DGRFLLVDHYAPEDPV---LDE---FVNHLNRLRDPSHVRESSLS 155 (239)
T ss_dssp CEEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEECBCSSHH---HHH---HHHHHHHHHCTTCCCCCBHH
T ss_pred cEEEEEECCchhhccCH--HHHHHHHHHHcCC---CcEEEEEEcCCCCChh---HHH---HHHHHHHhccccccCCCCHH
Confidence 49999999999999765 5699999999999 9999998887654421 111 11111 11 11224567999
Q ss_pred HHHHHHHHcCCceeEEEEe
Q 018205 330 EWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 330 ~~~~ll~~aGf~~~~~~~~ 348 (359)
+|.++|+++||+++++...
T Consensus 156 ~~~~ll~~aGf~~~~~~~~ 174 (239)
T 1xxl_A 156 EWQAMFSANQLAYQDIQKW 174 (239)
T ss_dssp HHHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHHCCCcEEEEEee
Confidence 9999999999998887654
No 30
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=99.68 E-value=2.9e-16 Score=141.39 Aligned_cols=161 Identities=16% Similarity=0.145 Sum_probs=118.0
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCCCCCCc
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQSIPPA 253 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~~~p~~ 253 (359)
..+++.++ ..+..+|||||||+|.++..+++.++ .+++++|++. +++.+++ .+++++..+|+.+....|
T Consensus 54 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~f 130 (287)
T 1kpg_A 54 DLALGKLG--LQPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPV 130 (287)
T ss_dssp HHHHTTTT--CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCC
T ss_pred HHHHHHcC--CCCcCEEEEECCcccHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCe
Confidence 34555555 56678999999999999999997764 5999999954 7776652 358999999994322459
Q ss_pred cEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcc-----hHHHHHHHhhhhh-hhhhcCCcccC
Q 018205 254 DAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKED-----AQLTEAKLLYDML-MMVAVRGSERT 327 (359)
Q Consensus 254 D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~g~~~t 327 (359)
|+|++..++|++++++...+|++++++|+| ||.+++.+......... +.........+.. .....++..++
T Consensus 131 D~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 207 (287)
T 1kpg_A 131 DRIVSIGAFEHFGHERYDAFFSLAHRLLPA---DGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPS 207 (287)
T ss_dssp SEEEEESCGGGTCTTTHHHHHHHHHHHSCT---TCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCC
T ss_pred eEEEEeCchhhcChHHHHHHHHHHHHhcCC---CCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCC
Confidence 999999999999876778899999999999 99999998876543210 0000000111111 11123556779
Q ss_pred HHHHHHHHHHcCCceeEEEEe
Q 018205 328 EKEWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 328 ~~~~~~ll~~aGf~~~~~~~~ 348 (359)
.++|.++++++||+++++...
T Consensus 208 ~~~~~~~l~~aGf~~~~~~~~ 228 (287)
T 1kpg_A 208 IPMVQECASANGFTVTRVQSL 228 (287)
T ss_dssp HHHHHHHHHTTTCEEEEEEEC
T ss_pred HHHHHHHHHhCCcEEEEEEeC
Confidence 999999999999999998765
No 31
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42
Probab=99.68 E-value=1.4e-16 Score=140.68 Aligned_cols=149 Identities=17% Similarity=0.269 Sum_probs=115.2
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC----CCCceEeeCCCCC-CCC--Cc
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD----TDNLKFIAGDMFQ-SIP--PA 253 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~----~~~v~~~~~d~~~-~~p--~~ 253 (359)
..+++.++ ..+..+|||||||+|.++..+++.. ..+++++|++. +++.|++ ..+++++.+|+.+ +++ .|
T Consensus 83 ~~~l~~l~--~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f 159 (254)
T 1xtp_A 83 RNFIASLP--GHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTY 159 (254)
T ss_dssp HHHHHTST--TCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCE
T ss_pred HHHHHhhc--ccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCe
Confidence 34555554 4567899999999999999999886 55799999954 8777662 2679999999855 343 49
Q ss_pred cEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHH
Q 018205 254 DAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEK 333 (359)
Q Consensus 254 D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ 333 (359)
|+|++.+++|++++++..++|++++++|+| ||.+++.+........ ..+. ......++.++|.+
T Consensus 160 D~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~---------~~~~----~~~~~~~~~~~~~~ 223 (254)
T 1xtp_A 160 DLIVIQWTAIYLTDADFVKFFKHCQQALTP---NGYIFFKENCSTGDRF---------LVDK----EDSSLTRSDIHYKR 223 (254)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEBC--CCE---------EEET----TTTEEEBCHHHHHH
T ss_pred EEEEEcchhhhCCHHHHHHHHHHHHHhcCC---CeEEEEEecCCCcccc---------eecc----cCCcccCCHHHHHH
Confidence 999999999999988888999999999999 8999998865433211 0110 11234579999999
Q ss_pred HHHHcCCceeEEEEeC
Q 018205 334 LFLDAGFSHFKITPVY 349 (359)
Q Consensus 334 ll~~aGf~~~~~~~~~ 349 (359)
+|+++||+++++....
T Consensus 224 ~l~~aGf~~~~~~~~~ 239 (254)
T 1xtp_A 224 LFNESGVRVVKEAFQE 239 (254)
T ss_dssp HHHHHTCCEEEEEECT
T ss_pred HHHHCCCEEEEeeecC
Confidence 9999999999987764
No 32
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=99.68 E-value=3.7e-16 Score=141.38 Aligned_cols=152 Identities=17% Similarity=0.316 Sum_probs=116.0
Q ss_pred HHHHHhc----ccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCC-
Q 018205 182 NLIVKDC----QPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQ- 248 (359)
Q Consensus 182 ~~~~~~~----~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~- 248 (359)
..+++.+ . +.+..+|||||||+|.++..+++.+ +.+++++|++. +++.|++ .++++++.+|+.+
T Consensus 68 ~~l~~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 144 (297)
T 2o57_A 68 EWLASELAMTGV--LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI 144 (297)
T ss_dssp HHHHHHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC
T ss_pred HHHHHHhhhccC--CCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccC
Confidence 3455555 3 5667899999999999999999986 56999999955 8777652 3689999999965
Q ss_pred CCC--CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCccc
Q 018205 249 SIP--PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSER 326 (359)
Q Consensus 249 ~~p--~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 326 (359)
+++ .||+|++..++|++++. ..+|++++++|+| ||.+++.+.......... .....+... ......
T Consensus 145 ~~~~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~---~~~~~~~~~----~~~~~~ 212 (297)
T 2o57_A 145 PCEDNSYDFIWSQDAFLHSPDK--LKVFQECARVLKP---RGVMAITDPMKEDGIDKS---SIQPILDRI----KLHDMG 212 (297)
T ss_dssp SSCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEEEECTTCCGG---GGHHHHHHH----TCSSCC
T ss_pred CCCCCCEeEEEecchhhhcCCH--HHHHHHHHHHcCC---CeEEEEEEeccCCCCchH---HHHHHHHHh----cCCCCC
Confidence 444 49999999999999874 6799999999999 999999998766543221 111111111 112356
Q ss_pred CHHHHHHHHHHcCCceeEEEEe
Q 018205 327 TEKEWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 327 t~~~~~~ll~~aGf~~~~~~~~ 348 (359)
+.++|.++|+++||+++++...
T Consensus 213 ~~~~~~~~l~~aGf~~~~~~~~ 234 (297)
T 2o57_A 213 SLGLYRSLAKECGLVTLRTFSR 234 (297)
T ss_dssp CHHHHHHHHHHTTEEEEEEEEC
T ss_pred CHHHHHHHHHHCCCeEEEEEEC
Confidence 8999999999999999988765
No 33
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=99.68 E-value=1.4e-16 Score=139.26 Aligned_cols=162 Identities=18% Similarity=0.168 Sum_probs=113.5
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-CCCceEeeCCCCC-CCC-CccEEEE-cchhccCCc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-TDNLKFIAGDMFQ-SIP-PADAFFF-KAIFHAFVD 267 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-~~~v~~~~~d~~~-~~p-~~D~i~~-~~vl~~~~~ 267 (359)
.+..+|||||||+|.++..+++..+ +++++|++. +++.|++ ..+++++.+|+.+ +.+ .||+|+| ..++|++++
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~ 116 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVVSMFSSVGYLKT 116 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCCSSCEEEEEECTTGGGGCCS
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcccCCCCcEEEEcCchHhhcCC
Confidence 4578999999999999999999865 899999954 8887763 4679999999965 333 4999995 559999864
Q ss_pred -hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHH--------H----H--------HHHhhhhhhhhhc-CC--
Q 018205 268 -EDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQL--------T----E--------AKLLYDMLMMVAV-RG-- 323 (359)
Q Consensus 268 -~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~--------~----~--------~~~~~~~~~~~~~-~g-- 323 (359)
++..++|++++++|+| ||.+++.+...+........ . . ........+.... ++
T Consensus 117 ~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (239)
T 3bxo_A 117 TEELGAAVASFAEHLEP---GGVVVVEPWWFPETFADGWVSADVVRRDGRTVARVSHSVREGNATRMEVHFTVADPGKGV 193 (239)
T ss_dssp HHHHHHHHHHHHHTEEE---EEEEEECCCCCTTTCCTTCEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhcCC---CeEEEEEeccCcccccccceEeeEEecCCceEEEEEEEecCCCEEEEEEEEEEecCCCcc
Confidence 5678899999999999 88888876554432100000 0 0 0000001111001 11
Q ss_pred ---------cccCHHHHHHHHHHcCCceeEEEEeCCceeEEEEeC
Q 018205 324 ---------SERTEKEWEKLFLDAGFSHFKITPVYGIKSLIEVYP 359 (359)
Q Consensus 324 ---------~~~t~~~~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 359 (359)
+.++.++|.++|+++||+++.+....+...+++++|
T Consensus 194 ~~~~~~~~~~~~t~~~~~~ll~~aGF~v~~~~~~~~~~~~~va~K 238 (239)
T 3bxo_A 194 RHFSDVHLITLFHQAEYEAAFTAAGLRVEYLEGGPSGRGLFVGVP 238 (239)
T ss_dssp EEEEEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred eEEEEEEEeeecCHHHHHHHHHHCCCEEEEeEcCCCCceEEEEec
Confidence 357999999999999998777766666677777754
No 34
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=99.68 E-value=3.1e-16 Score=137.40 Aligned_cols=142 Identities=22% Similarity=0.269 Sum_probs=108.8
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC---CCCceEeeCCCCC-CCC--CccEEEEcchhccC
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD---TDNLKFIAGDMFQ-SIP--PADAFFFKAIFHAF 265 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~---~~~v~~~~~d~~~-~~p--~~D~i~~~~vl~~~ 265 (359)
++..+|||||||+|.++..+++. +.+++++|++. +++.++. ..+++++.+|+.+ +++ .||+|++.+++|++
T Consensus 52 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 129 (242)
T 3l8d_A 52 KKEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWT 129 (242)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSS
T ss_pred CCCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhc
Confidence 46789999999999999999998 67999999954 7777663 5789999999965 443 49999999999999
Q ss_pred CchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCceeEE
Q 018205 266 VDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKI 345 (359)
Q Consensus 266 ~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~~ 345 (359)
++. ..+|++++++|+| ||.+++.+.......... .+............++.+++.++|+++||++++.
T Consensus 130 ~~~--~~~l~~~~~~L~p---gG~l~i~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 197 (242)
T 3l8d_A 130 EEP--LRALNEIKRVLKS---DGYACIAILGPTAKPREN-------SYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDG 197 (242)
T ss_dssp SCH--HHHHHHHHHHEEE---EEEEEEEEECTTCGGGGG-------GGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEEE
T ss_pred cCH--HHHHHHHHHHhCC---CeEEEEEEcCCcchhhhh-------hhhhhccccccccCCCHHHHHHHHHHcCCEEEEe
Confidence 765 4699999999999 898888875544322111 1111111112234578999999999999999998
Q ss_pred EEe
Q 018205 346 TPV 348 (359)
Q Consensus 346 ~~~ 348 (359)
..+
T Consensus 198 ~~~ 200 (242)
T 3l8d_A 198 IGV 200 (242)
T ss_dssp EEE
T ss_pred ecc
Confidence 765
No 35
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=99.68 E-value=2.3e-16 Score=139.46 Aligned_cols=152 Identities=13% Similarity=0.108 Sum_probs=114.9
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCC-CCC-
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQ-SIP- 251 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~-~~p- 251 (359)
..+++.+. ..+..+|||||||+|.++..+++.+ +.+++++|++. +++.|++ .++++++.+|+.+ +.+
T Consensus 26 ~~l~~~~~--~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 102 (256)
T 1nkv_A 26 ATLGRVLR--MKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANE 102 (256)
T ss_dssp HHHHHHTC--CCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSS
T ss_pred HHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCC
Confidence 35555555 5677899999999999999999987 67999999954 8877752 2589999999965 232
Q ss_pred CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHH
Q 018205 252 PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEW 331 (359)
Q Consensus 252 ~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~ 331 (359)
.||+|++..++|++++. .++|++++++|+| ||.+++.+.......... .....+ ........++.++|
T Consensus 103 ~fD~V~~~~~~~~~~~~--~~~l~~~~r~Lkp---gG~l~~~~~~~~~~~~~~---~~~~~~----~~~~~~~~~~~~~~ 170 (256)
T 1nkv_A 103 KCDVAACVGATWIAGGF--AGAEELLAQSLKP---GGIMLIGEPYWRQLPATE---EIAQAC----GVSSTSDFLTLPGL 170 (256)
T ss_dssp CEEEEEEESCGGGTSSS--HHHHHHHTTSEEE---EEEEEEEEEEETTCCSSH---HHHHTT----TCSCGGGSCCHHHH
T ss_pred CCCEEEECCChHhcCCH--HHHHHHHHHHcCC---CeEEEEecCcccCCCChH---HHHHHH----hcccccccCCHHHH
Confidence 49999999999999765 5699999999999 999999988765443221 110000 00111246799999
Q ss_pred HHHHHHcCCceeEEEEe
Q 018205 332 EKLFLDAGFSHFKITPV 348 (359)
Q Consensus 332 ~~ll~~aGf~~~~~~~~ 348 (359)
.++|+++||+.+++...
T Consensus 171 ~~~l~~aGf~~~~~~~~ 187 (256)
T 1nkv_A 171 VGAFDDLGYDVVEMVLA 187 (256)
T ss_dssp HHHHHTTTBCCCEEEEC
T ss_pred HHHHHHCCCeeEEEEeC
Confidence 99999999999887653
No 36
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=99.68 E-value=1.1e-16 Score=136.63 Aligned_cols=138 Identities=16% Similarity=0.125 Sum_probs=110.9
Q ss_pred CCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-CCCceEeeCCCCC-CCC--CccEEEEcchhccCCchH
Q 018205 195 LGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-TDNLKFIAGDMFQ-SIP--PADAFFFKAIFHAFVDED 269 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-~~~v~~~~~d~~~-~~p--~~D~i~~~~vl~~~~~~~ 269 (359)
..+|||||||+|.++..+++. +.+++++|++. +++.+++ ..+++++.+|+.+ +++ .||+|++.+++|+++.++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~ 119 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGE 119 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTT
T ss_pred CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHH
Confidence 689999999999999999988 66899999954 8887764 5689999999965 333 499999999999998777
Q ss_pred HHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCceeEEEEeC
Q 018205 270 CLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPVY 349 (359)
Q Consensus 270 ~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~~~~~~ 349 (359)
...+|++++++|+| ||.+++........... ... ......++.++|.++|+++||+++++...+
T Consensus 120 ~~~~l~~~~~~L~p---gG~l~i~~~~~~~~~~~---------~~~----~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 183 (203)
T 3h2b_A 120 LPDALVALRMAVED---GGGLLMSFFSGPSLEPM---------YHP----VATAYRWPLPELAQALETAGFQVTSSHWDP 183 (203)
T ss_dssp HHHHHHHHHHTEEE---EEEEEEEEECCSSCEEE---------CCS----SSCEEECCHHHHHHHHHHTTEEEEEEEECT
T ss_pred HHHHHHHHHHHcCC---CcEEEEEEccCCchhhh---------hch----hhhhccCCHHHHHHHHHHCCCcEEEEEecC
Confidence 78899999999999 89888887655442110 000 112346799999999999999999998774
Q ss_pred C
Q 018205 350 G 350 (359)
Q Consensus 350 ~ 350 (359)
.
T Consensus 184 ~ 184 (203)
T 3h2b_A 184 R 184 (203)
T ss_dssp T
T ss_pred C
Confidence 4
No 37
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=99.67 E-value=3e-16 Score=140.49 Aligned_cols=152 Identities=16% Similarity=0.324 Sum_probs=112.8
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCC-CCC--CccEEEEcch
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQ-SIP--PADAFFFKAI 261 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~-~~p--~~D~i~~~~v 261 (359)
+.+..+|||||||+|.++..+++.+|+.+++++|++. +++.+++ ..++++..+|+.+ +++ .||+|+++++
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 114 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV 114 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESC
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEech
Confidence 4677899999999999999999999999999999954 8777652 3579999999965 333 4999999999
Q ss_pred hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhh--hhhhhcCCcccCHHHHHHHHHHcC
Q 018205 262 FHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDM--LMMVAVRGSERTEKEWEKLFLDAG 339 (359)
Q Consensus 262 l~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~t~~~~~~ll~~aG 339 (359)
++++++.. .+|++++++|+| ||.+++.+.........+........+.. ......++..++..++.++|+++|
T Consensus 115 l~~~~~~~--~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aG 189 (276)
T 3mgg_A 115 LEHLQSPE--EALKSLKKVLKP---GGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESG 189 (276)
T ss_dssp GGGCSCHH--HHHHHHHHHEEE---EEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHHTTCCTTGGGGHHHHHHHTT
T ss_pred hhhcCCHH--HHHHHHHHHcCC---CcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHCC
Confidence 99998764 699999999999 99999988654322100000011011111 111123455677889999999999
Q ss_pred CceeEEEEe
Q 018205 340 FSHFKITPV 348 (359)
Q Consensus 340 f~~~~~~~~ 348 (359)
|+++++...
T Consensus 190 f~~v~~~~~ 198 (276)
T 3mgg_A 190 FEKIRVEPR 198 (276)
T ss_dssp CEEEEEEEE
T ss_pred CCeEEEeeE
Confidence 999888755
No 38
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=99.67 E-value=4.4e-16 Score=146.06 Aligned_cols=145 Identities=17% Similarity=0.307 Sum_probs=112.5
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeeccc-ccccCCCC--------------CCceEeeCCCCC-------C
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDLPH-VVPKVPDT--------------DNLKFIAGDMFQ-------S 249 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~-~~~~a~~~--------------~~v~~~~~d~~~-------~ 249 (359)
.+..+|||||||+|.++..+++.+ |+.+++++|++. +++.|++. .+++++.+|+.+ +
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~ 161 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG 161 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence 457899999999999999999986 788999999954 88777632 689999999965 3
Q ss_pred CC--CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccC
Q 018205 250 IP--PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERT 327 (359)
Q Consensus 250 ~p--~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t 327 (359)
++ .||+|+++.++|++++. ..+|++++++|+| ||.+++.+.......... . ...........+..++
T Consensus 162 ~~~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~Lkp---gG~l~i~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~ 230 (383)
T 4fsd_A 162 VPDSSVDIVISNCVCNLSTNK--LALFKEIHRVLRD---GGELYFSDVYADRRLSEA-A-----QQDPILYGECLGGALY 230 (383)
T ss_dssp CCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEEEESSCCCHH-H-----HHCHHHHHTTCTTCCB
T ss_pred CCCCCEEEEEEccchhcCCCH--HHHHHHHHHHcCC---CCEEEEEEeccccccCHh-H-----hhhHHHhhcccccCCC
Confidence 44 49999999999999775 5699999999999 999999887766443221 1 1111122223345678
Q ss_pred HHHHHHHHHHcCCceeEEEEe
Q 018205 328 EKEWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 328 ~~~~~~ll~~aGf~~~~~~~~ 348 (359)
.++|.++|+++||+.+++...
T Consensus 231 ~~~~~~ll~~aGF~~v~~~~~ 251 (383)
T 4fsd_A 231 LEDFRRLVAEAGFRDVRLVSV 251 (383)
T ss_dssp HHHHHHHHHHTTCCCEEEEEE
T ss_pred HHHHHHHHHHCCCceEEEEec
Confidence 999999999999998776543
No 39
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=99.67 E-value=4.8e-16 Score=141.10 Aligned_cols=163 Identities=16% Similarity=0.195 Sum_probs=120.5
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCCCCCCc
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQSIPPA 253 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~~~p~~ 253 (359)
..+++.+. ..+..+|||||||+|.++..+++.++ .+++++|++. +++.|++ .++++++.+|+.+....|
T Consensus 62 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~f 138 (302)
T 3hem_A 62 KLALDKLN--LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPV 138 (302)
T ss_dssp HHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCC
T ss_pred HHHHHHcC--CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHcCCCc
Confidence 35566665 56778999999999999999999976 7999999954 8877762 348999999995442349
Q ss_pred cEEEEcchhccCCc-------hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHH-----HHHHhhhhhhh-hh
Q 018205 254 DAFFFKAIFHAFVD-------EDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLT-----EAKLLYDMLMM-VA 320 (359)
Q Consensus 254 D~i~~~~vl~~~~~-------~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~-----~~~~~~~~~~~-~~ 320 (359)
|+|++..++|++++ +....+++++.++|+| ||.+++.+...+......... ......++... ..
T Consensus 139 D~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (302)
T 3hem_A 139 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPD---DGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIF 215 (302)
T ss_dssp SEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCT---TCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTC
T ss_pred cEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCC---CcEEEEEEEeccCccchhhccccccccccchHHHHHHhcC
Confidence 99999999999954 5567899999999999 999999888766432110000 00000011111 12
Q ss_pred cCCcccCHHHHHHHHHHcCCceeEEEEeCC
Q 018205 321 VRGSERTEKEWEKLFLDAGFSHFKITPVYG 350 (359)
Q Consensus 321 ~~g~~~t~~~~~~ll~~aGf~~~~~~~~~~ 350 (359)
.++..++.+++.++++++||+++++...+.
T Consensus 216 p~~~~~s~~~~~~~l~~aGf~~~~~~~~~~ 245 (302)
T 3hem_A 216 PGGRLPRISQVDYYSSNAGWKVERYHRIGA 245 (302)
T ss_dssp TTCCCCCHHHHHHHHHHHTCEEEEEEECGG
T ss_pred CCCCCCCHHHHHHHHHhCCcEEEEEEeCch
Confidence 356788999999999999999999877643
No 40
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=99.67 E-value=2.2e-16 Score=135.52 Aligned_cols=138 Identities=14% Similarity=0.116 Sum_probs=108.2
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCCCCCceEeeCCCCC-CCC-CccEEEEcchhccCCch
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPDTDNLKFIAGDMFQ-SIP-PADAFFFKAIFHAFVDE 268 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~~v~~~~~d~~~-~~p-~~D~i~~~~vl~~~~~~ 268 (359)
+.+..+|||||||+|.++..+++. +.+++++|++. +++.++...++.+..+|+.+ +.+ .||+|++..++|+++++
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~ 118 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRLGRPVRTMLFHQLDAIDAYDAVWAHACLLHVPRD 118 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHTSCCEECCGGGCCCCSCEEEEEECSCGGGSCHH
T ss_pred cCCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhcCCceEEeeeccCCCCCcEEEEEecCchhhcCHH
Confidence 345789999999999999999987 67999999955 88877754478888999854 322 49999999999999977
Q ss_pred HHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcC-CceeEEEE
Q 018205 269 DCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAG-FSHFKITP 347 (359)
Q Consensus 269 ~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aG-f~~~~~~~ 347 (359)
+...+|++++++|+| ||.+++............ .. .....++.++|.++|+++| |+++++..
T Consensus 119 ~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~--------~~------~~~~~~~~~~~~~~l~~aG~f~~~~~~~ 181 (211)
T 3e23_A 119 ELADVLKLIWRALKP---GGLFYASYKSGEGEGRDK--------LA------RYYNYPSEEWLRARYAEAGTWASVAVES 181 (211)
T ss_dssp HHHHHHHHHHHHEEE---EEEEEEEEECCSSCEECT--------TS------CEECCCCHHHHHHHHHHHCCCSEEEEEE
T ss_pred HHHHHHHHHHHhcCC---CcEEEEEEcCCCcccccc--------cc------hhccCCCHHHHHHHHHhCCCcEEEEEEe
Confidence 888999999999999 888888754443221110 00 0113569999999999999 99998876
Q ss_pred e
Q 018205 348 V 348 (359)
Q Consensus 348 ~ 348 (359)
.
T Consensus 182 ~ 182 (211)
T 3e23_A 182 S 182 (211)
T ss_dssp E
T ss_pred c
Confidence 5
No 41
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=99.66 E-value=1.9e-16 Score=143.51 Aligned_cols=169 Identities=15% Similarity=0.241 Sum_probs=115.8
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----C----CCceEeeCCCCC-CC
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----T----DNLKFIAGDMFQ-SI 250 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----~----~~v~~~~~d~~~-~~ 250 (359)
..+++.++ .+..+|||||||+|.++..+++. +.+++++|++. +++.|++ . .+++++++|+.+ +.
T Consensus 73 ~~~~~~~~---~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~ 147 (299)
T 3g2m_A 73 REFATRTG---PVSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL 147 (299)
T ss_dssp HHHHHHHC---CCCSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC
T ss_pred HHHHHhhC---CCCCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc
Confidence 45555554 23459999999999999999988 67899999954 8887763 1 689999999966 33
Q ss_pred C-CccEEEEc-chhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcch-----HHH-HHHHhhhhhh-----
Q 018205 251 P-PADAFFFK-AIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDA-----QLT-EAKLLYDMLM----- 317 (359)
Q Consensus 251 p-~~D~i~~~-~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~-----~~~-~~~~~~~~~~----- 317 (359)
+ .||+|++. .++|++++++..++|++++++|+| ||.+++............ .+. .....+.+..
T Consensus 148 ~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 224 (299)
T 3g2m_A 148 DKRFGTVVISSGSINELDEADRRGLYASVREHLEP---GGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPA 224 (299)
T ss_dssp SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEE---EEEEEEEEECCHHHHSCCCCC-------------CCEEEEEE
T ss_pred CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCC---CcEEEEEeecCccccccchhccceeecCCCcEEEEEEEEecc
Confidence 4 49988864 778888777788999999999999 888888766543210000 000 0000000000
Q ss_pred --------h-----------hhcCCcccCHHHHHHHHHHcCCceeEEEEeCCc------eeEEEEe
Q 018205 318 --------M-----------VAVRGSERTEKEWEKLFLDAGFSHFKITPVYGI------KSLIEVY 358 (359)
Q Consensus 318 --------~-----------~~~~g~~~t~~~~~~ll~~aGf~~~~~~~~~~~------~~vi~~~ 358 (359)
. .....+.++.++|.++|+++||+++++...... ..++++.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~g~~~~~~~lvea~ 290 (299)
T 3g2m_A 225 EEIQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFASGGAGRKDMVLVEAV 290 (299)
T ss_dssp EEEEEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEECTTSSSSCCEEEEEEE
T ss_pred ccEEEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecCCCCCCccceeeeehh
Confidence 0 000112579999999999999999999988522 3566654
No 42
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Probab=99.66 E-value=4.8e-16 Score=138.11 Aligned_cols=151 Identities=13% Similarity=0.205 Sum_probs=112.5
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCCCCCceEeeCCCCC-CCC--CccEEE
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPDTDNLKFIAGDMFQ-SIP--PADAFF 257 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~~v~~~~~d~~~-~~p--~~D~i~ 257 (359)
..+++.++ ..+..+|||||||+|.++..+++ ++.+++++|++. +++.++...+++++.+|+.+ +++ .||+|+
T Consensus 24 ~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~ 99 (261)
T 3ege_A 24 NAIINLLN--LPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVI 99 (261)
T ss_dssp HHHHHHHC--CCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEE
T ss_pred HHHHHHhC--CCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEE
Confidence 45556565 46678999999999999999997 678999999965 99988876799999999965 444 499999
Q ss_pred EcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHH
Q 018205 258 FKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLD 337 (359)
Q Consensus 258 ~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~ 337 (359)
+.+++|++++. ..+|++++++|+ ||.+++.+.......... .. ..+.. .........++.+++. +|++
T Consensus 100 ~~~~l~~~~~~--~~~l~~~~~~Lk----gG~~~~~~~~~~~~~~~~---~~-~~~~~-~~~~~~~~~~~~~~~~-~l~~ 167 (261)
T 3ege_A 100 SILAIHHFSHL--EKSFQEMQRIIR----DGTIVLLTFDIRLAQRIW---LY-DYFPF-LWEDALRFLPLDEQIN-LLQE 167 (261)
T ss_dssp EESCGGGCSSH--HHHHHHHHHHBC----SSCEEEEEECGGGCCCCG---GG-GTCHH-HHHHHHTSCCHHHHHH-HHHH
T ss_pred EcchHhhccCH--HHHHHHHHHHhC----CcEEEEEEcCCchhHHHH---HH-HHHHH-HhhhhhhhCCCHHHHH-HHHH
Confidence 99999999665 569999999998 488999887654332110 00 00000 0011123455788899 9999
Q ss_pred cCCceeEEEEe
Q 018205 338 AGFSHFKITPV 348 (359)
Q Consensus 338 aGf~~~~~~~~ 348 (359)
+||+.+++...
T Consensus 168 aGF~~v~~~~~ 178 (261)
T 3ege_A 168 NTKRRVEAIPF 178 (261)
T ss_dssp HHCSEEEEEEC
T ss_pred cCCCceeEEEe
Confidence 99999888766
No 43
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Probab=99.66 E-value=1.4e-15 Score=135.96 Aligned_cols=140 Identities=18% Similarity=0.276 Sum_probs=108.5
Q ss_pred CCCeEEEeCCCc---chHHHHHHHHCCCCeEEEeecc-cccccCCC----CCCceEeeCCCCCC------------C--C
Q 018205 194 GLGSLVDVGGGT---GSFARIISEAFPGIKCTVLDLP-HVVPKVPD----TDNLKFIAGDMFQS------------I--P 251 (359)
Q Consensus 194 ~~~~vlDvG~G~---G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~----~~~v~~~~~d~~~~------------~--p 251 (359)
+..+|||||||+ |.++..+.+.+|+.+++++|++ .|++.|++ .++++++.+|+.+. + .
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~ 156 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDFS 156 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCTT
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCCC
Confidence 457999999999 9998888888999999999995 58887762 47899999999641 2 3
Q ss_pred CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHH
Q 018205 252 PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEW 331 (359)
Q Consensus 252 ~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~ 331 (359)
.||+|++..+||++++++...+|++++++|+| ||.+++.+..... ... . ....+...........++.+++
T Consensus 157 ~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~p---GG~l~i~~~~~~~--~~~-~---~~~~~~~~~~~~~~~~~s~~ei 227 (274)
T 2qe6_A 157 RPAAIMLVGMLHYLSPDVVDRVVGAYRDALAP---GSYLFMTSLVDTG--LPA-Q---QKLARITRENLGEGWARTPEEI 227 (274)
T ss_dssp SCCEEEETTTGGGSCTTTHHHHHHHHHHHSCT---TCEEEEEEEBCSS--CHH-H---HHHHHHHHHHHSCCCCBCHHHH
T ss_pred CCEEEEEechhhhCCcHHHHHHHHHHHHhCCC---CcEEEEEEecCcc--hHH-H---HHHHHHHHhcCCCCccCCHHHH
Confidence 58999999999999987788899999999999 9999998877533 111 1 1112222211224567899999
Q ss_pred HHHHHHcCCceeE
Q 018205 332 EKLFLDAGFSHFK 344 (359)
Q Consensus 332 ~~ll~~aGf~~~~ 344 (359)
.++| .||++++
T Consensus 228 ~~~l--~G~~l~~ 238 (274)
T 2qe6_A 228 ERQF--GDFELVE 238 (274)
T ss_dssp HHTT--TTCEECT
T ss_pred HHHh--CCCeEcc
Confidence 9999 6998765
No 44
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=99.66 E-value=5.7e-16 Score=141.64 Aligned_cols=161 Identities=18% Similarity=0.229 Sum_probs=118.9
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCCCCCCc
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQSIPPA 253 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~~~p~~ 253 (359)
..+++.++ ..+..+|||||||+|.++..+++.+ +.+++++|++. +++.|++ .++++++.+|+.+....|
T Consensus 80 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~f 156 (318)
T 2fk8_A 80 DLNLDKLD--LKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPV 156 (318)
T ss_dssp HHHHTTSC--CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCC
T ss_pred HHHHHhcC--CCCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCCCCc
Confidence 35555555 5667899999999999999999887 56999999954 8777662 257999999984422359
Q ss_pred cEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcch----HHH-HHHHhhhhhh-hhhcCCcccC
Q 018205 254 DAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDA----QLT-EAKLLYDMLM-MVAVRGSERT 327 (359)
Q Consensus 254 D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~----~~~-~~~~~~~~~~-~~~~~g~~~t 327 (359)
|+|++..++|++++++..++|+++.++|+| ||.+++.+.......... ... ......+... ....++..++
T Consensus 157 D~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 233 (318)
T 2fk8_A 157 DRIVSIEAFEHFGHENYDDFFKRCFNIMPA---DGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPS 233 (318)
T ss_dssp SEEEEESCGGGTCGGGHHHHHHHHHHHSCT---TCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCC
T ss_pred CEEEEeChHHhcCHHHHHHHHHHHHHhcCC---CcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCC
Confidence 999999999999877778899999999999 999999988875532100 000 0000111111 1113456789
Q ss_pred HHHHHHHHHHcCCceeEEEEe
Q 018205 328 EKEWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 328 ~~~~~~ll~~aGf~~~~~~~~ 348 (359)
.+++.++++++||+++++...
T Consensus 234 ~~~~~~~l~~aGf~~~~~~~~ 254 (318)
T 2fk8_A 234 TEMMVEHGEKAGFTVPEPLSL 254 (318)
T ss_dssp HHHHHHHHHHTTCBCCCCEEC
T ss_pred HHHHHHHHHhCCCEEEEEEec
Confidence 999999999999999887765
No 45
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=99.66 E-value=1.6e-16 Score=138.77 Aligned_cols=132 Identities=20% Similarity=0.259 Sum_probs=106.8
Q ss_pred CCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCCCCC--CccEEEEcchhcc
Q 018205 195 LGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQSIP--PADAFFFKAIFHA 264 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~~~p--~~D~i~~~~vl~~ 264 (359)
..+|||||||+|.++..+++ ++.+++++|++. +++.|++ ..+++++.+|+.+..+ .||+|+++.++|+
T Consensus 67 ~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~ 144 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCA 144 (235)
T ss_dssp CEEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTT
T ss_pred CCCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhc
Confidence 46999999999999999876 477899999954 8877662 2469999999976333 4999999999999
Q ss_pred CCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCceeE
Q 018205 265 FVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFK 344 (359)
Q Consensus 265 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~ 344 (359)
+++++...+|++++++|+| ||.+++.+......... ....++.++|.++|+++||++++
T Consensus 145 ~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~------------------~~~~~~~~~~~~~l~~~Gf~~~~ 203 (235)
T 3lcc_A 145 IEPEMRPAWAKSMYELLKP---DGELITLMYPITDHVGG------------------PPYKVDVSTFEEVLVPIGFKAVS 203 (235)
T ss_dssp SCGGGHHHHHHHHHHHEEE---EEEEEEEECCCSCCCSC------------------SSCCCCHHHHHHHHGGGTEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCC---CcEEEEEEecccccCCC------------------CCccCCHHHHHHHHHHcCCeEEE
Confidence 9977888999999999999 89998877655432211 01225899999999999999999
Q ss_pred EEEeC
Q 018205 345 ITPVY 349 (359)
Q Consensus 345 ~~~~~ 349 (359)
+...+
T Consensus 204 ~~~~~ 208 (235)
T 3lcc_A 204 VEENP 208 (235)
T ss_dssp EEECT
T ss_pred EEecC
Confidence 88774
No 46
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=99.66 E-value=7.8e-16 Score=136.15 Aligned_cols=151 Identities=15% Similarity=0.142 Sum_probs=113.3
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCC-CCC--
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQ-SIP-- 251 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~-~~p-- 251 (359)
.++..+. .+.+..+|||||||+|.++..+++..+. +++++|++. +++.|++ .++++++.+|+.+ +++
T Consensus 36 ~~l~~l~-~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 113 (257)
T 3f4k_A 36 KAVSFIN-ELTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNE 113 (257)
T ss_dssp HHHTTSC-CCCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTT
T ss_pred HHHHHHh-cCCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCC
Confidence 3444443 2456789999999999999999999876 999999954 8776652 4569999999955 343
Q ss_pred CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHH
Q 018205 252 PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEW 331 (359)
Q Consensus 252 ~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~ 331 (359)
.||+|++..++|++ + ...+|++++++|+| ||.+++.+.......... .....+ . ......++.++|
T Consensus 114 ~fD~v~~~~~l~~~-~--~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~---~~~~~~---~--~~~~~~~~~~~~ 179 (257)
T 3f4k_A 114 ELDLIWSEGAIYNI-G--FERGMNEWSKYLKK---GGFIAVSEASWFTSERPA---EIEDFW---M--DAYPEISVIPTC 179 (257)
T ss_dssp CEEEEEEESCSCCC-C--HHHHHHHHHTTEEE---EEEEEEEEEEESSSCCCH---HHHHHH---H--HHCTTCCBHHHH
T ss_pred CEEEEEecChHhhc-C--HHHHHHHHHHHcCC---CcEEEEEEeeccCCCChH---HHHHHH---H--HhCCCCCCHHHH
Confidence 49999999999998 3 35699999999999 999999997754433221 111111 1 011235689999
Q ss_pred HHHHHHcCCceeEEEEeC
Q 018205 332 EKLFLDAGFSHFKITPVY 349 (359)
Q Consensus 332 ~~ll~~aGf~~~~~~~~~ 349 (359)
.++|+++||+++++...+
T Consensus 180 ~~~l~~aGf~~v~~~~~~ 197 (257)
T 3f4k_A 180 IDKMERAGYTPTAHFILP 197 (257)
T ss_dssp HHHHHHTTEEEEEEEECC
T ss_pred HHHHHHCCCeEEEEEECC
Confidence 999999999999987664
No 47
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36
Probab=99.66 E-value=1.9e-16 Score=135.35 Aligned_cols=134 Identities=10% Similarity=0.095 Sum_probs=104.3
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------------------CCCceEeeCCCCC-CC-
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------------------TDNLKFIAGDMFQ-SI- 250 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------------------~~~v~~~~~d~~~-~~- 250 (359)
+.+..+|||+|||+|..+..|+++ +.+++++|+++ |++.|++ ..+++++++|+++ +.
T Consensus 20 ~~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~ 97 (203)
T 1pjz_A 20 VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR 97 (203)
T ss_dssp CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred cCCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcc
Confidence 456789999999999999999998 67999999965 8887752 2579999999966 32
Q ss_pred --CCccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCH
Q 018205 251 --PPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTE 328 (359)
Q Consensus 251 --p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~ 328 (359)
..||+|++..++|++++++..+++++++++|+| ||.++++.......... .....++.
T Consensus 98 ~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~Lkp---gG~~~l~~~~~~~~~~~-----------------~~~~~~~~ 157 (203)
T 1pjz_A 98 DIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQ---ACSGLLITLEYDQALLE-----------------GPPFSVPQ 157 (203)
T ss_dssp HHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCS---EEEEEEEEESSCSSSSS-----------------SCCCCCCH
T ss_pred cCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCC---CcEEEEEEEecCccccC-----------------CCCCCCCH
Confidence 259999999999999987778899999999999 89866655443211000 01122588
Q ss_pred HHHHHHHHHcCCceeEEEEe
Q 018205 329 KEWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 329 ~~~~~ll~~aGf~~~~~~~~ 348 (359)
+++.++|.+ ||++..+...
T Consensus 158 ~el~~~~~~-gf~i~~~~~~ 176 (203)
T 1pjz_A 158 TWLHRVMSG-NWEVTKVGGQ 176 (203)
T ss_dssp HHHHHTSCS-SEEEEEEEES
T ss_pred HHHHHHhcC-CcEEEEeccc
Confidence 999999998 9998777655
No 48
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=99.66 E-value=3.9e-16 Score=137.11 Aligned_cols=144 Identities=15% Similarity=0.226 Sum_probs=106.9
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC--CCCceEeeCCCCCCCC--CccEEEEcchhccCCc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD--TDNLKFIAGDMFQSIP--PADAFFFKAIFHAFVD 267 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~--~~~v~~~~~d~~~~~p--~~D~i~~~~vl~~~~~ 267 (359)
.+..+|||||||+|.++..+++..+ +++++|++. +++.|++ ..+++++.+|+.+..+ .||+|++.+++||+++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~ 118 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDD 118 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCSS
T ss_pred cCCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccEEEEhhHHHhhcC
Confidence 3567899999999999999998865 699999965 8877763 1289999999955433 4999999999999987
Q ss_pred hHHHHHHHHHH-HhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhh---------hhhhhcCCcccCHHHHHHHHHH
Q 018205 268 EDCLKILKRCR-EAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDM---------LMMVAVRGSERTEKEWEKLFLD 337 (359)
Q Consensus 268 ~~~~~~L~~~~-~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~g~~~t~~~~~~ll~~ 337 (359)
. .++|++++ ++|+| ||.+++.++....... ........ ..........++.+++.++|++
T Consensus 119 ~--~~~l~~~~~~~Lkp---gG~l~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 188 (250)
T 2p7i_A 119 P--VALLKRINDDWLAE---GGRLFLVCPNANAVSR-----QIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASR 188 (250)
T ss_dssp H--HHHHHHHHHTTEEE---EEEEEEEEECTTCHHH-----HHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHH
T ss_pred H--HHHHHHHHHHhcCC---CCEEEEEcCChHHHHH-----HHHHHcCccccchhcccccccccccccCCHHHHHHHHHH
Confidence 6 56999999 99999 8999998765432110 00000000 0001123456899999999999
Q ss_pred cCCceeEEEEe
Q 018205 338 AGFSHFKITPV 348 (359)
Q Consensus 338 aGf~~~~~~~~ 348 (359)
+||+++++...
T Consensus 189 ~Gf~~~~~~~~ 199 (250)
T 2p7i_A 189 AGLQVTYRSGI 199 (250)
T ss_dssp TTCEEEEEEEE
T ss_pred CCCeEEEEeee
Confidence 99999988754
No 49
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=99.66 E-value=1.4e-15 Score=138.65 Aligned_cols=154 Identities=12% Similarity=0.115 Sum_probs=115.3
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCC-CCC-
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQ-SIP- 251 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~-~~p- 251 (359)
..+++.+. .+.+..+|||||||+|.++..+++++ +.+++++|++. +++.|++ .++++++.+|+.+ +++
T Consensus 106 ~~l~~~l~-~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 183 (312)
T 3vc1_A 106 EFLMDHLG-QAGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDK 183 (312)
T ss_dssp HHHHTTSC-CCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCT
T ss_pred HHHHHHhc-cCCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCC
Confidence 34455443 24567899999999999999999986 67999999954 8877662 3589999999965 444
Q ss_pred -CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHH
Q 018205 252 -PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKE 330 (359)
Q Consensus 252 -~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~ 330 (359)
.||+|++..++|+++ ...+|++++++|+| ||.+++.+........... ......... .....++.++
T Consensus 184 ~~fD~V~~~~~l~~~~---~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~--~~~~~~~~~----~~~~~~s~~~ 251 (312)
T 3vc1_A 184 GAVTASWNNESTMYVD---LHDLFSEHSRFLKV---GGRYVTITGCWNPRYGQPS--KWVSQINAH----FECNIHSRRE 251 (312)
T ss_dssp TCEEEEEEESCGGGSC---HHHHHHHHHHHEEE---EEEEEEEEEEECTTTCSCC--HHHHHHHHH----HTCCCCBHHH
T ss_pred CCEeEEEECCchhhCC---HHHHHHHHHHHcCC---CcEEEEEEccccccccchh--HHHHHHHhh----hcCCCCCHHH
Confidence 499999999999994 56799999999999 9999999987765431110 111111111 1123678999
Q ss_pred HHHHHHHcCCceeEEEEeC
Q 018205 331 WEKLFLDAGFSHFKITPVY 349 (359)
Q Consensus 331 ~~~ll~~aGf~~~~~~~~~ 349 (359)
|.++|+++||+++++....
T Consensus 252 ~~~~l~~aGf~~~~~~~~~ 270 (312)
T 3vc1_A 252 YLRAMADNRLVPHTIVDLT 270 (312)
T ss_dssp HHHHHHTTTEEEEEEEECH
T ss_pred HHHHHHHCCCEEEEEEeCC
Confidence 9999999999999988753
No 50
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=99.65 E-value=4.4e-16 Score=141.58 Aligned_cols=164 Identities=12% Similarity=0.126 Sum_probs=114.2
Q ss_pred cCCCCeEEEeCCCcchHHHHHH-HHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCC-CCC-CccEEEEcc
Q 018205 192 FQGLGSLVDVGGGTGSFARIIS-EAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQ-SIP-PADAFFFKA 260 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~-~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~-~~p-~~D~i~~~~ 260 (359)
+.+..+|||||||+|.++..++ ...|+.+++++|++. +++.|++ .++++++.+|+.+ +++ .||+|+++.
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~ 195 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNG 195 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECCS
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEECC
Confidence 4567899999999999999986 668899999999954 8777652 3459999999965 333 499999999
Q ss_pred hhccCCchH-HHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcch------HHHH-HHHhhhhhhhhhcC---CcccCHH
Q 018205 261 IFHAFVDED-CLKILKRCREAIASRGDRGKVIIIDIVINEKKEDA------QLTE-AKLLYDMLMMVAVR---GSERTEK 329 (359)
Q Consensus 261 vl~~~~~~~-~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~------~~~~-~~~~~~~~~~~~~~---g~~~t~~ 329 (359)
++|++++++ ..+++++++++|+| ||.+++.+...+...... .+.. ........+..... ...++.+
T Consensus 196 ~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (305)
T 3ocj_A 196 LNIYEPDDARVTELYRRFWQALKP---GGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHA 272 (305)
T ss_dssp SGGGCCCHHHHHHHHHHHHHHEEE---EEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHH
T ss_pred hhhhcCCHHHHHHHHHHHHHhcCC---CeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHH
Confidence 999997554 45689999999999 899998776543321110 0000 00000000100111 1347999
Q ss_pred HHHHHHHHcCCceeEEEEeC-CceeEEEEe
Q 018205 330 EWEKLFLDAGFSHFKITPVY-GIKSLIEVY 358 (359)
Q Consensus 330 ~~~~ll~~aGf~~~~~~~~~-~~~~vi~~~ 358 (359)
++.++|+++||+++++.... .....+.++
T Consensus 273 ~~~~~l~~aGF~~v~~~~~~~~~~~~v~a~ 302 (305)
T 3ocj_A 273 QTRAQLEEAGFTDLRFEDDRARLFPTVIAR 302 (305)
T ss_dssp HHHHHHHHTTCEEEEEECCTTSSSCEEEEE
T ss_pred HHHHHHHHCCCEEEEEEcccCceeeEEEEe
Confidence 99999999999999998653 334444443
No 51
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=99.65 E-value=6.9e-16 Score=137.47 Aligned_cols=150 Identities=13% Similarity=0.092 Sum_probs=114.0
Q ss_pred HHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCC-CCC--C
Q 018205 184 IVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQ-SIP--P 252 (359)
Q Consensus 184 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~-~~p--~ 252 (359)
++..+. .+.+..+|||||||+|.++..+++. +..+++++|++. +++.|++ .++++++.+|+.+ +++ .
T Consensus 37 ~l~~l~-~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 114 (267)
T 3kkz_A 37 ALSFID-NLTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEE 114 (267)
T ss_dssp HHTTCC-CCCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTC
T ss_pred HHHhcc-cCCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCC
Confidence 344443 2456789999999999999999998 788999999954 8877662 3679999999965 333 4
Q ss_pred ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHH
Q 018205 253 ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWE 332 (359)
Q Consensus 253 ~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~ 332 (359)
||+|++..++|++ +. ..+|++++++|+| ||.+++.+.......... .....+. ......++.+++.
T Consensus 115 fD~i~~~~~~~~~-~~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~---~~~~~~~-----~~~~~~~~~~~~~ 180 (267)
T 3kkz_A 115 LDLIWSEGAIYNI-GF--ERGLNEWRKYLKK---GGYLAVSECSWFTDERPA---EINDFWM-----DAYPEIDTIPNQV 180 (267)
T ss_dssp EEEEEESSCGGGT-CH--HHHHHHHGGGEEE---EEEEEEEEEEESSSCCCH---HHHHHHH-----HHCTTCEEHHHHH
T ss_pred EEEEEEcCCceec-CH--HHHHHHHHHHcCC---CCEEEEEEeeecCCCChH---HHHHHHH-----HhCCCCCCHHHHH
Confidence 9999999999999 33 5699999999999 999999998755443221 1111110 1112456899999
Q ss_pred HHHHHcCCceeEEEEeC
Q 018205 333 KLFLDAGFSHFKITPVY 349 (359)
Q Consensus 333 ~ll~~aGf~~~~~~~~~ 349 (359)
++|+++||+++++...+
T Consensus 181 ~~l~~aGf~~v~~~~~~ 197 (267)
T 3kkz_A 181 AKIHKAGYLPVATFILP 197 (267)
T ss_dssp HHHHHTTEEEEEEEECC
T ss_pred HHHHHCCCEEEEEEECC
Confidence 99999999999988764
No 52
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=99.65 E-value=1.3e-15 Score=136.51 Aligned_cols=153 Identities=19% Similarity=0.196 Sum_probs=112.1
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-CCCceEeeCCCCC-CCC-CccEEE
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-TDNLKFIAGDMFQ-SIP-PADAFF 257 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-~~~v~~~~~d~~~-~~p-~~D~i~ 257 (359)
..+++.+. ..+..+|||||||+|.++..+++ ++.+++++|++. +++.++. ..++++..+|+.+ +.+ .||+|+
T Consensus 47 ~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~ 122 (279)
T 3ccf_A 47 EDLLQLLN--PQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKPLDAVF 122 (279)
T ss_dssp CHHHHHHC--CCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCCSSCEEEEE
T ss_pred HHHHHHhC--CCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCcCCCcCEEE
Confidence 56666665 55678999999999999999998 688999999954 8877763 3689999999965 333 499999
Q ss_pred EcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhh-------hhcCCcccCHHH
Q 018205 258 FKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMM-------VAVRGSERTEKE 330 (359)
Q Consensus 258 ~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~g~~~t~~~ 330 (359)
+++++|++++. ..+|++++++|+| ||.+++.......... . ...+...... .......++.++
T Consensus 123 ~~~~l~~~~d~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (279)
T 3ccf_A 123 SNAMLHWVKEP--EAAIASIHQALKS---GGRFVAEFGGKGNIKY---I--LEALYNALETLGIHNPQALNPWYFPSIGE 192 (279)
T ss_dssp EESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEECTTTTHH---H--HHHHHHHHHHHTCCCGGGGCCCCCCCHHH
T ss_pred EcchhhhCcCH--HHHHHHHHHhcCC---CcEEEEEecCCcchHH---H--HHHHHHHHHhcCCccccCcCceeCCCHHH
Confidence 99999999766 4699999999999 8888887654332111 0 0011111000 001123568999
Q ss_pred HHHHHHHcCCceeEEEEe
Q 018205 331 WEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 331 ~~~ll~~aGf~~~~~~~~ 348 (359)
|.++|+++||+++++...
T Consensus 193 ~~~~l~~aGf~~~~~~~~ 210 (279)
T 3ccf_A 193 YVNILEKQGFDVTYAALF 210 (279)
T ss_dssp HHHHHHHHTEEEEEEEEE
T ss_pred HHHHHHHcCCEEEEEEEe
Confidence 999999999999887655
No 53
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=99.64 E-value=2.6e-16 Score=130.35 Aligned_cols=146 Identities=18% Similarity=0.228 Sum_probs=113.2
Q ss_pred HHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-CCCceEeeCCCCC-CCCCccEEEEcc
Q 018205 184 IVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-TDNLKFIAGDMFQ-SIPPADAFFFKA 260 (359)
Q Consensus 184 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-~~~v~~~~~d~~~-~~p~~D~i~~~~ 260 (359)
+++.++ ..+..+|||+|||+|.++..+++... +++++|++. +++.+++ .+++++..+| .. +...||+|+++.
T Consensus 9 ~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~v~~~~~d-~~~~~~~~D~v~~~~ 83 (170)
T 3i9f_A 9 YLPNIF--EGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEKFDSVITLSDP-KEIPDNSVDFILFAN 83 (170)
T ss_dssp THHHHH--SSCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHHCTTSEEESSG-GGSCTTCEEEEEEES
T ss_pred HHHhcC--cCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHhCCCcEEEeCC-CCCCCCceEEEEEcc
Confidence 444454 55678999999999999999999873 899999954 7777764 5789999999 22 223599999999
Q ss_pred hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCC
Q 018205 261 IFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGF 340 (359)
Q Consensus 261 vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf 340 (359)
++|++++. ..++++++++|+| ||.+++.+.........+ .....++.++|.++|+ ||
T Consensus 84 ~l~~~~~~--~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~l~--Gf 140 (170)
T 3i9f_A 84 SFHDMDDK--QHVISEVKRILKD---DGRVIIIDWRKENTGIGP----------------PLSIRMDEKDYMGWFS--NF 140 (170)
T ss_dssp CSTTCSCH--HHHHHHHHHHEEE---EEEEEEEEECSSCCSSSS----------------CGGGCCCHHHHHHHTT--TE
T ss_pred chhcccCH--HHHHHHHHHhcCC---CCEEEEEEcCccccccCc----------------hHhhhcCHHHHHHHHh--Cc
Confidence 99999765 5699999999999 999999887765433211 0013368999999998 99
Q ss_pred ceeEEEEeCCceeEEEE
Q 018205 341 SHFKITPVYGIKSLIEV 357 (359)
Q Consensus 341 ~~~~~~~~~~~~~vi~~ 357 (359)
+++++.........+.+
T Consensus 141 ~~~~~~~~~~~~~~l~~ 157 (170)
T 3i9f_A 141 VVEKRFNPTPYHFGLVL 157 (170)
T ss_dssp EEEEEECSSTTEEEEEE
T ss_pred EEEEccCCCCceEEEEE
Confidence 99999998766555544
No 54
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=99.64 E-value=1.6e-15 Score=132.05 Aligned_cols=148 Identities=17% Similarity=0.185 Sum_probs=108.5
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----------CCCceEeeCCCCC-CCC--CccEEE
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----------TDNLKFIAGDMFQ-SIP--PADAFF 257 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----------~~~v~~~~~d~~~-~~p--~~D~i~ 257 (359)
++..+|||||||+|.++..+++. +.+++++|++. +++.+++ ..++++..+|+.+ +++ .||+|+
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 106 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAV 106 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEE
Confidence 45789999999999999999998 67999999954 7766552 2367999999965 333 499999
Q ss_pred EcchhccCCchH-HHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhc---------------
Q 018205 258 FKAIFHAFVDED-CLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAV--------------- 321 (359)
Q Consensus 258 ~~~vl~~~~~~~-~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 321 (359)
+..+++++++.+ ..++|++++++|+| ||.+++.+......... + .......+......
T Consensus 107 ~~~~l~~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (235)
T 3sm3_A 107 MQAFLTSVPDPKERSRIIKEVFRVLKP---GAYLYLVEFGQNWHLKL--Y-RKRYLHDFPITKEEGSFLARDPETGETEF 180 (235)
T ss_dssp EESCGGGCCCHHHHHHHHHHHHHHEEE---EEEEEEEEEBCCTTSHH--H-HHHHHHHHHHHCSTTEEEEECTTTCCEEE
T ss_pred EcchhhcCCCHHHHHHHHHHHHHHcCC---CeEEEEEECCcchhHHH--H-HHHhhhhccchhhhcceEecccccCCcce
Confidence 999999997653 55799999999999 99999988766443221 1 11111111110000
Q ss_pred CCcccCHHHHHHHHHHcCCceeEEEEe
Q 018205 322 RGSERTEKEWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 322 ~g~~~t~~~~~~ll~~aGf~~~~~~~~ 348 (359)
....++.++|.++|+++||+++++...
T Consensus 181 ~~~~~~~~~l~~ll~~aGf~~~~~~~~ 207 (235)
T 3sm3_A 181 IAHHFTEKELVFLLTDCRFEIDYFRVK 207 (235)
T ss_dssp EEECBCHHHHHHHHHTTTEEEEEEEEE
T ss_pred eeEeCCHHHHHHHHHHcCCEEEEEEec
Confidence 013679999999999999999888654
No 55
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=99.64 E-value=2.7e-15 Score=140.15 Aligned_cols=215 Identities=9% Similarity=0.016 Sum_probs=135.1
Q ss_pred CcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccccccc-cCCCCChh
Q 018205 39 DIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFL-KDKPYCLS 117 (359)
Q Consensus 39 glf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~~l~-~~~~~~~~ 117 (359)
++|..| . +|.|++|||+.+|+ +++.+++||+.|.+.|+++.. ++ |++|+.+..+. ..++....
T Consensus 47 ~ll~~L-~--~~~t~~eLa~~~g~---~~~~v~~~L~~l~~~gll~~~---------~~-~~lt~~~~~~l~~~~~~~~~ 110 (373)
T 2qm3_A 47 NVLSAV-L--ASDDIWRIVDLSEE---PLPLVVAILESLNELGYVTFE---------DG-VKLTEKGEELVAEYGIGKRY 110 (373)
T ss_dssp HHHHHH-H--HCSCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEECS---------SS-SEECHHHHHHHHHHTCCCCC
T ss_pred HHHHHh-c--CCCCHHHHHHHhCC---ChHHHHHHHHHHhhCCcEEEC---------CC-EEECHHHHHHHHhcCccccc
Confidence 778888 5 69999999999999 789999999999999999875 35 99998765333 22211111
Q ss_pred hHHhhhc--Cccccc----chhhhhHhhhcCCCchhhhhcCCCChhhhcccCccHHHHHHHHHhhcccchHHHHHhcccc
Q 018205 118 PVVLTLT--DQVFVN----PCHFLSRWFRDNELSAYETANDGTVFWDYMAKNPDFNSIYNQAMASDSQLANLIVKDCQPI 191 (359)
Q Consensus 118 ~~~~~~~--~~~~~~----~~~~L~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~ 191 (359)
......+ ....+. .|..+.+.++... .+ ...|+..+..++. .. ..++......
T Consensus 111 ~~~~~~~~g~g~~~~~~~~~~~~l~~~~~~~~-~~-------~~~~~~~~~~~~~--~~-----------~~~l~~~~~~ 169 (373)
T 2qm3_A 111 DFTCPHCQGKTVDLQAFADLLEQFREIVKDRP-EP-------LHEFDQAYVTPET--TV-----------ARVILMHTRG 169 (373)
T ss_dssp C------------CGGGHHHHHHHHHHHTTCC-CC-------CGGGTCCCBCHHH--HH-----------HHHHHHHHTT
T ss_pred cccchhhcCCCcchhhhHHHHHHHHHHHhcCC-cc-------chhcCCeecCHHH--HH-----------HHHHHHhhcC
Confidence 1110000 001111 1233444444321 10 0111110001110 00 0111101101
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC------CCCceEeeCCCCCCCC-----CccEEEEc
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD------TDNLKFIAGDMFQSIP-----PADAFFFK 259 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~------~~~v~~~~~d~~~~~p-----~~D~i~~~ 259 (359)
..+..+|||+| |+|.++..+++..|+.+++++|++ .+++.|++ ..+++++.+|+.+.+| .||+|+++
T Consensus 170 ~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~ 248 (373)
T 2qm3_A 170 DLENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITD 248 (373)
T ss_dssp CSTTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEEC
T ss_pred CCCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEEC
Confidence 22468999999 999999999999887899999994 58887762 2389999999976443 49999998
Q ss_pred chhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 018205 260 AIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVI 297 (359)
Q Consensus 260 ~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~ 297 (359)
..++.. ....+++++.++|+| ||++++++...
T Consensus 249 ~p~~~~---~~~~~l~~~~~~Lkp---gG~~~~~~~~~ 280 (373)
T 2qm3_A 249 PPETLE---AIRAFVGRGIATLKG---PRCAGYFGITR 280 (373)
T ss_dssp CCSSHH---HHHHHHHHHHHTBCS---TTCEEEEEECT
T ss_pred CCCchH---HHHHHHHHHHHHccc---CCeEEEEEEec
Confidence 766543 246799999999999 89776666543
No 56
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=99.64 E-value=3.9e-16 Score=137.86 Aligned_cols=157 Identities=14% Similarity=0.108 Sum_probs=108.4
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC---CCCceEeeCCCCC-CCC--CccE
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD---TDNLKFIAGDMFQ-SIP--PADA 255 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~---~~~v~~~~~d~~~-~~p--~~D~ 255 (359)
.+.+.++ ..+..+|||||||+|.++..+++..+. +++++|++. +++.|++ ..+++++.+|+.+ +++ .||+
T Consensus 35 ~l~~~~~--~~~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 111 (253)
T 3g5l_A 35 ELKKMLP--DFNQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNV 111 (253)
T ss_dssp HHHTTCC--CCTTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEE
T ss_pred HHHHhhh--ccCCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEE
Confidence 3444444 346789999999999999999998654 899999954 8877663 4789999999955 443 4999
Q ss_pred EEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCC------------CCcchHHHHHHHhhhhh-----hh
Q 018205 256 FFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINE------------KKEDAQLTEAKLLYDML-----MM 318 (359)
Q Consensus 256 i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~------------~~~~~~~~~~~~~~~~~-----~~ 318 (359)
|++..++|++++. .++|++++++|+| ||.+++....... ....... ....+++.. ..
T Consensus 112 v~~~~~l~~~~~~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 185 (253)
T 3g5l_A 112 VLSSLALHYIASF--DDICKKVYINLKS---SGSFIFSVEHPVFTADGRQDWYTDETGNKLHW-PVDRYFNESMRTSHFL 185 (253)
T ss_dssp EEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEECHHHHSSSSCSCEECSSCCEEEE-EECCTTCCCEEEEEET
T ss_pred EEEchhhhhhhhH--HHHHHHHHHHcCC---CcEEEEEeCCCccccCccccceeccCCceEEE-EeccccccceEEEeec
Confidence 9999999999654 6699999999999 8888886543210 0000000 000000000 00
Q ss_pred -hhcCCcccCHHHHHHHHHHcCCceeEEEEe
Q 018205 319 -VAVRGSERTEKEWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 319 -~~~~g~~~t~~~~~~ll~~aGf~~~~~~~~ 348 (359)
.......++.++|.++|+++||+++++...
T Consensus 186 ~~~~~~~~~t~~~~~~~l~~aGF~~~~~~e~ 216 (253)
T 3g5l_A 186 GEDVQKYHRTVTTYIQTLLKNGFQINSVIEP 216 (253)
T ss_dssp TEEEEEECCCHHHHHHHHHHTTEEEEEEECC
T ss_pred cccCccEecCHHHHHHHHHHcCCeeeeeecC
Confidence 001112349999999999999999998855
No 57
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=99.64 E-value=5e-16 Score=136.21 Aligned_cols=138 Identities=14% Similarity=0.263 Sum_probs=110.0
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCC-CCC--CccEEEEcchhc
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQ-SIP--PADAFFFKAIFH 263 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~-~~p--~~D~i~~~~vl~ 263 (359)
+..+|||||||+|.++..+++.. ..+++++|++. +++.|++ ..+++++.+|+.+ +.+ .||+|++.+++|
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 157 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 157 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence 47899999999999999998876 56899999954 8877662 2358899999854 333 499999999999
Q ss_pred cCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCcee
Q 018205 264 AFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHF 343 (359)
Q Consensus 264 ~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~ 343 (359)
++++++...+|++++++|+| ||.+++.+....... .++. ......++.++|.++|+++||+++
T Consensus 158 ~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~----------~~~~----~~~~~~~~~~~~~~~l~~aGf~~~ 220 (241)
T 2ex4_A 158 HLTDQHLAEFLRRCKGSLRP---NGIIVIKDNMAQEGV----------ILDD----VDSSVCRDLDVVRRIICSAGLSLL 220 (241)
T ss_dssp GSCHHHHHHHHHHHHHHEEE---EEEEEEEEEEBSSSE----------EEET----TTTEEEEBHHHHHHHHHHTTCCEE
T ss_pred hCCHHHHHHHHHHHHHhcCC---CeEEEEEEccCCCcc----------eecc----cCCcccCCHHHHHHHHHHcCCeEE
Confidence 99988778899999999999 999999887765411 1110 112335689999999999999999
Q ss_pred EEEEeC
Q 018205 344 KITPVY 349 (359)
Q Consensus 344 ~~~~~~ 349 (359)
++....
T Consensus 221 ~~~~~~ 226 (241)
T 2ex4_A 221 AEERQE 226 (241)
T ss_dssp EEEECC
T ss_pred EeeecC
Confidence 998764
No 58
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=99.63 E-value=1.3e-15 Score=137.01 Aligned_cols=152 Identities=14% Similarity=0.194 Sum_probs=109.1
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCC-CeEEEeeccc-ccccCCC-----CCCceEeeCCCCC-CCC-CccEEEEcchh
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPG-IKCTVLDLPH-VVPKVPD-----TDNLKFIAGDMFQ-SIP-PADAFFFKAIF 262 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~~~-~~~~a~~-----~~~v~~~~~d~~~-~~p-~~D~i~~~~vl 262 (359)
..+..+|||||||+|.++..+++.+|. .+++++|++. +++.|++ ..+++++.+|+.+ +.+ .||+|++..++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l 99 (284)
T 3gu3_A 20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFL 99 (284)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEEEEEESCG
T ss_pred cCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcCCCeeEEEECChh
Confidence 456789999999999999999999984 8999999954 7776652 3389999999965 333 49999999999
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeec-----CCCCcchHHHH---HHHhhhhhh--hhhcCCcccCHHHHH
Q 018205 263 HAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVI-----NEKKEDAQLTE---AKLLYDMLM--MVAVRGSERTEKEWE 332 (359)
Q Consensus 263 ~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~-----~~~~~~~~~~~---~~~~~~~~~--~~~~~g~~~t~~~~~ 332 (359)
+++++. .+++++++++|+| ||.+++.++.. .....+..... ...+..... ....+....+..++.
T Consensus 100 ~~~~~~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 174 (284)
T 3gu3_A 100 LHMTTP--ETMLQKMIHSVKK---GGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIP 174 (284)
T ss_dssp GGCSSH--HHHHHHHHHTEEE---EEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHTCCCTTGGGTHH
T ss_pred hcCCCH--HHHHHHHHHHcCC---CCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhhcccccHHHHHH
Confidence 999776 4699999999999 99999988761 11000000000 001111111 111233455677899
Q ss_pred HHHHHcCCceeEEEEe
Q 018205 333 KLFLDAGFSHFKITPV 348 (359)
Q Consensus 333 ~ll~~aGf~~~~~~~~ 348 (359)
++|+++||+.+++...
T Consensus 175 ~~l~~aGF~~v~~~~~ 190 (284)
T 3gu3_A 175 IYLSELGVKNIECRVS 190 (284)
T ss_dssp HHHHHTTCEEEEEEEC
T ss_pred HHHHHcCCCeEEEEEc
Confidence 9999999998877543
No 59
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Probab=99.63 E-value=9.3e-17 Score=145.10 Aligned_cols=155 Identities=14% Similarity=0.247 Sum_probs=106.9
Q ss_pred HHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCCC--------------------------
Q 018205 184 IVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPDT-------------------------- 236 (359)
Q Consensus 184 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~-------------------------- 236 (359)
++..+...+....+|||||||+|.++..+++.++..+++++|++. +++.|++.
T Consensus 36 ~l~~l~~~~~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (292)
T 3g07_A 36 RLRVLKPEWFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEE 115 (292)
T ss_dssp GGGTSCGGGTTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-------------------------
T ss_pred HHHhhhhhhcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccc
Confidence 334444233457899999999999999999999999999999954 77665421
Q ss_pred --------------------------------------CCceEeeCCCCCCC--------CCccEEEEcchhccC----C
Q 018205 237 --------------------------------------DNLKFIAGDMFQSI--------PPADAFFFKAIFHAF----V 266 (359)
Q Consensus 237 --------------------------------------~~v~~~~~d~~~~~--------p~~D~i~~~~vl~~~----~ 266 (359)
.++++.++|+.... +.||+|+|..+++++ +
T Consensus 116 ~~~~~~~~~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~ 195 (292)
T 3g07_A 116 GTTTVRKRSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWG 195 (292)
T ss_dssp --------------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHH
T ss_pred ccccccccccccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCC
Confidence 58999999996422 259999999999765 6
Q ss_pred chHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHH--cCCceeE
Q 018205 267 DEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLD--AGFSHFK 344 (359)
Q Consensus 267 ~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~--aGf~~~~ 344 (359)
++...++|++++++|+| ||.+++....+.. +......... .........+..+++.++|.+ +||+.++
T Consensus 196 ~~~~~~~l~~~~~~Lkp---GG~lil~~~~~~~------y~~~~~~~~~-~~~~~~~~~~~p~~~~~~L~~~~~GF~~~~ 265 (292)
T 3g07_A 196 DEGLKRMFRRIYRHLRP---GGILVLEPQPWSS------YGKRKTLTET-IYKNYYRIQLKPEQFSSYLTSPDVGFSSYE 265 (292)
T ss_dssp HHHHHHHHHHHHHHEEE---EEEEEEECCCHHH------HHTTTTSCHH-HHHHHHHCCCCGGGHHHHHTSTTTCCCEEE
T ss_pred HHHHHHHHHHHHHHhCC---CcEEEEecCCchh------hhhhhcccHH-HHhhhhcEEEcHHHHHHHHHhcCCCceEEE
Confidence 67888999999999999 7877774322211 1100000000 000011123457899999999 9998887
Q ss_pred EEEe
Q 018205 345 ITPV 348 (359)
Q Consensus 345 ~~~~ 348 (359)
+...
T Consensus 266 ~~~~ 269 (292)
T 3g07_A 266 LVAT 269 (292)
T ss_dssp EC--
T ss_pred Eecc
Confidence 7654
No 60
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=99.63 E-value=3.5e-16 Score=134.96 Aligned_cols=141 Identities=13% Similarity=0.048 Sum_probs=101.2
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC----C-------CCceEeeCCCCC-CCC--CccEEE
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD----T-------DNLKFIAGDMFQ-SIP--PADAFF 257 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~----~-------~~v~~~~~d~~~-~~p--~~D~i~ 257 (359)
.+..+|||||||+|.++..+++..|..+++++|++. +++.|++ . .+++++.+|+.. +.+ .||+|+
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~ 107 (217)
T 3jwh_A 28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAAT 107 (217)
T ss_dssp TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEE
T ss_pred cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEEe
Confidence 456899999999999999999998888999999954 8877652 1 279999999844 222 599999
Q ss_pred EcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHH-HhhhhhhhhhcCCcccCHHHHH----
Q 018205 258 FKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAK-LLYDMLMMVAVRGSERTEKEWE---- 332 (359)
Q Consensus 258 ~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~t~~~~~---- 332 (359)
+..++|++++++..++|++++++|+| ||.+++.. ..... ... ......+........++.+++.
T Consensus 108 ~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~-~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 176 (217)
T 3jwh_A 108 VIEVIEHLDLSRLGAFERVLFEFAQP---KIVIVTTP-NIEYN-------VKFANLPAGKLRHKDHRFEWTRSQFQNWAN 176 (217)
T ss_dssp EESCGGGCCHHHHHHHHHHHHTTTCC---SEEEEEEE-BHHHH-------HHTC-----------CCSCBCHHHHHHHHH
T ss_pred eHHHHHcCCHHHHHHHHHHHHHHcCC---CEEEEEcc-Ccccc-------hhhcccccccccccccccccCHHHHHHHHH
Confidence 99999999988888999999999999 78555443 21110 000 0000001111223457899998
Q ss_pred HHHHHcCCceeE
Q 018205 333 KLFLDAGFSHFK 344 (359)
Q Consensus 333 ~ll~~aGf~~~~ 344 (359)
++++++||++..
T Consensus 177 ~~~~~~Gf~v~~ 188 (217)
T 3jwh_A 177 KITERFAYNVQF 188 (217)
T ss_dssp HHHHHSSEEEEE
T ss_pred HHHHHcCceEEE
Confidence 999999998644
No 61
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=99.63 E-value=1.3e-15 Score=134.76 Aligned_cols=155 Identities=15% Similarity=0.151 Sum_probs=109.5
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-CCCceEeeCCCCCCCC--CccEEE
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-TDNLKFIAGDMFQSIP--PADAFF 257 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-~~~v~~~~~d~~~~~p--~~D~i~ 257 (359)
..+++.+. ..+..+|||||||+|.++..+++.+|+.+++++|++. +++.+++ ..+++++.+|+.+..+ .||+|+
T Consensus 23 ~~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~ 100 (259)
T 2p35_A 23 RDLLAQVP--LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWKPAQKADLLY 100 (259)
T ss_dssp HHHHTTCC--CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCCCSSCEEEEE
T ss_pred HHHHHhcC--CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcCccCCcCEEE
Confidence 34555555 4567899999999999999999999999999999954 8887763 5689999999965223 499999
Q ss_pred EcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHh--hhhhhhh--hcCCcccCHHHHHH
Q 018205 258 FKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLL--YDMLMMV--AVRGSERTEKEWEK 333 (359)
Q Consensus 258 ~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~g~~~t~~~~~~ 333 (359)
++.++|++++. ..+|++++++|+| ||.+++.................... +...... ......++.++|.+
T Consensus 101 ~~~~l~~~~~~--~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (259)
T 2p35_A 101 ANAVFQWVPDH--LAVLSQLMDQLES---GGVLAVQMPDNLQEPTHIAMHETADGGPWKDAFSGGGLRRKPLPPPSDYFN 175 (259)
T ss_dssp EESCGGGSTTH--HHHHHHHGGGEEE---EEEEEEEEECCTTSHHHHHHHHHHHHSTTGGGC-------CCCCCHHHHHH
T ss_pred EeCchhhCCCH--HHHHHHHHHhcCC---CeEEEEEeCCCCCcHHHHHHHHHhcCcchHHHhccccccccCCCCHHHHHH
Confidence 99999999654 5699999999999 89988887543222111000000000 0000000 01234679999999
Q ss_pred HHHHcCCcee
Q 018205 334 LFLDAGFSHF 343 (359)
Q Consensus 334 ll~~aGf~~~ 343 (359)
+|+++||.+.
T Consensus 176 ~l~~aGf~v~ 185 (259)
T 2p35_A 176 ALSPKSSRVD 185 (259)
T ss_dssp HHGGGEEEEE
T ss_pred HHHhcCCceE
Confidence 9999999743
No 62
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=99.62 E-value=9.8e-16 Score=132.29 Aligned_cols=143 Identities=15% Similarity=0.129 Sum_probs=102.7
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCCC-----------CCceEeeCCCCC-CC--CCccEEE
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPDT-----------DNLKFIAGDMFQ-SI--PPADAFF 257 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~-----------~~v~~~~~d~~~-~~--p~~D~i~ 257 (359)
.+..+|||||||+|.++..+++..|..+++++|++. +++.|++. .+++++.+|+.. +. ..||+|+
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~ 107 (219)
T 3jwg_A 28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAAT 107 (219)
T ss_dssp TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEE
T ss_pred cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEE
Confidence 457899999999999999999998888999999955 88877631 289999999944 22 2599999
Q ss_pred EcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHH----H
Q 018205 258 FKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWE----K 333 (359)
Q Consensus 258 ~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~----~ 333 (359)
+..++|++++++..++|++++++|+| || +++............ ......+........++.+++. +
T Consensus 108 ~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG-~~i~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~ 177 (219)
T 3jwg_A 108 VIEVIEHLDENRLQAFEKVLFEFTRP---QT-VIVSTPNKEYNFHYG------NLFEGNLRHRDHRFEWTRKEFQTWAVK 177 (219)
T ss_dssp EESCGGGCCHHHHHHHHHHHHTTTCC---SE-EEEEEEBGGGGGCCC------CT-----GGGCCTTSBCHHHHHHHHHH
T ss_pred EHHHHHhCCHHHHHHHHHHHHHhhCC---CE-EEEEccchhhhhhhc------ccCcccccccCceeeecHHHHHHHHHH
Confidence 99999999988888899999999999 77 444444332211000 0000001111223456888988 8
Q ss_pred HHHHcCCceeEE
Q 018205 334 LFLDAGFSHFKI 345 (359)
Q Consensus 334 ll~~aGf~~~~~ 345 (359)
+++++||++...
T Consensus 178 l~~~~Gf~v~~~ 189 (219)
T 3jwg_A 178 VAEKYGYSVRFL 189 (219)
T ss_dssp HHHHHTEEEEEE
T ss_pred HHHHCCcEEEEE
Confidence 899999976443
No 63
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=99.62 E-value=1.1e-14 Score=122.85 Aligned_cols=133 Identities=13% Similarity=0.156 Sum_probs=106.8
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-CCCceEeeCCCCC-CCC--CccEE
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-TDNLKFIAGDMFQ-SIP--PADAF 256 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-~~~v~~~~~d~~~-~~p--~~D~i 256 (359)
..++..+. ++..+|||||||+|.++..+++. +.+++++|++. +++.++. ..+++++.+|+.+ +++ .||+|
T Consensus 37 ~~~l~~~~---~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i 111 (195)
T 3cgg_A 37 ARLIDAMA---PRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLI 111 (195)
T ss_dssp HHHHHHHS---CTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEE
T ss_pred HHHHHHhc---cCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEE
Confidence 44555543 46789999999999999999987 67999999954 7777663 4579999999965 444 49999
Q ss_pred EEc-chhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHH
Q 018205 257 FFK-AIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLF 335 (359)
Q Consensus 257 ~~~-~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll 335 (359)
++. .++|++++++...+|+++.++|+| ||.+++..... ..++.+++.+++
T Consensus 112 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~---~G~l~~~~~~~--------------------------~~~~~~~~~~~l 162 (195)
T 3cgg_A 112 VSAGNVMGFLAEDGREPALANIHRALGA---DGRAVIGFGAG--------------------------RGWVFGDFLEVA 162 (195)
T ss_dssp EECCCCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEETT--------------------------SSCCHHHHHHHH
T ss_pred EECCcHHhhcChHHHHHHHHHHHHHhCC---CCEEEEEeCCC--------------------------CCcCHHHHHHHH
Confidence 998 899999888788999999999999 88888754221 124788999999
Q ss_pred HHcCCceeEEEEe
Q 018205 336 LDAGFSHFKITPV 348 (359)
Q Consensus 336 ~~aGf~~~~~~~~ 348 (359)
+++||+++++...
T Consensus 163 ~~~Gf~~~~~~~~ 175 (195)
T 3cgg_A 163 ERVGLELENAFES 175 (195)
T ss_dssp HHHTEEEEEEESS
T ss_pred HHcCCEEeeeecc
Confidence 9999999888655
No 64
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=99.62 E-value=1.1e-15 Score=137.52 Aligned_cols=155 Identities=17% Similarity=0.222 Sum_probs=111.6
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCCC--CC-
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQS--IP- 251 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~~--~p- 251 (359)
.++..++ .++.+|||||||+|.++..+++. +.+++++|++. +++.|++ .++++++.+|+.+. ++
T Consensus 60 ~~l~~~~---~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 134 (285)
T 4htf_A 60 RVLAEMG---PQKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLE 134 (285)
T ss_dssp HHHHHTC---SSCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCS
T ss_pred HHHHhcC---CCCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcC
Confidence 4444444 34689999999999999999988 67999999954 8877763 26899999999552 22
Q ss_pred -CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhh--------hhcC
Q 018205 252 -PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMM--------VAVR 322 (359)
Q Consensus 252 -~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 322 (359)
.||+|++..++|++++. ..+|++++++|+| ||.+++............ .....+..... ....
T Consensus 135 ~~fD~v~~~~~l~~~~~~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 206 (285)
T 4htf_A 135 TPVDLILFHAVLEWVADP--RSVLQTLWSVLRP---GGVLSLMFYNAHGLLMHN---MVAGNFDYVQAGMPKKKKRTLSP 206 (285)
T ss_dssp SCEEEEEEESCGGGCSCH--HHHHHHHHHTEEE---EEEEEEEEEBHHHHHHHH---HHTTCHHHHHTTCCCC----CCC
T ss_pred CCceEEEECchhhcccCH--HHHHHHHHHHcCC---CeEEEEEEeCCchHHHHH---HHhcCHHHHhhhccccccccCCC
Confidence 49999999999999766 5699999999999 899888876543211000 00000000000 0012
Q ss_pred CcccCHHHHHHHHHHcCCceeEEEEeCC
Q 018205 323 GSERTEKEWEKLFLDAGFSHFKITPVYG 350 (359)
Q Consensus 323 g~~~t~~~~~~ll~~aGf~~~~~~~~~~ 350 (359)
...++.+++.++|+++||+++++..+..
T Consensus 207 ~~~~~~~~l~~~l~~aGf~v~~~~~~~~ 234 (285)
T 4htf_A 207 DYPRDPTQVYLWLEEAGWQIMGKTGVRV 234 (285)
T ss_dssp SCCBCHHHHHHHHHHTTCEEEEEEEESS
T ss_pred CCCCCHHHHHHHHHHCCCceeeeeeEEE
Confidence 2467899999999999999999887754
No 65
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=99.61 E-value=6.5e-15 Score=128.97 Aligned_cols=159 Identities=15% Similarity=0.164 Sum_probs=108.5
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC---CCCceEeeCCCCC-CCC--Ccc
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD---TDNLKFIAGDMFQ-SIP--PAD 254 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~---~~~v~~~~~d~~~-~~p--~~D 254 (359)
..+...++ ..+..+|||||||+|.++..+++... .+++++|++. +++.+++ ..+++++.+|+.+ +++ .||
T Consensus 33 ~~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD 109 (243)
T 3bkw_A 33 PALRAMLP--EVGGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFD 109 (243)
T ss_dssp HHHHHHSC--CCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEE
T ss_pred HHHHHhcc--ccCCCEEEEEcCcCCHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCce
Confidence 34555555 44678999999999999999998732 2899999954 7776652 3479999999955 343 499
Q ss_pred EEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCC---CCcchHHHH-------HHHhhh-----hhhhh
Q 018205 255 AFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINE---KKEDAQLTE-------AKLLYD-----MLMMV 319 (359)
Q Consensus 255 ~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~---~~~~~~~~~-------~~~~~~-----~~~~~ 319 (359)
+|++..++|++++. ..+|++++++|+| ||.+++....... ......... ....+. .....
T Consensus 110 ~v~~~~~l~~~~~~--~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (243)
T 3bkw_A 110 LAYSSLALHYVEDV--ARLFRTVHQALSP---GGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLA 184 (243)
T ss_dssp EEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHH
T ss_pred EEEEeccccccchH--HHHHHHHHHhcCc---CcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeecc
Confidence 99999999999754 5699999999999 8988887643210 000000000 000000 00000
Q ss_pred -hcCCcccCHHHHHHHHHHcCCceeEEEEe
Q 018205 320 -AVRGSERTEKEWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 320 -~~~g~~~t~~~~~~ll~~aGf~~~~~~~~ 348 (359)
......++.++|.++|+++||+++++...
T Consensus 185 ~~~~~~~~t~~~~~~~l~~aGF~~~~~~~~ 214 (243)
T 3bkw_A 185 KGVVKHHRTVGTTLNALIRSGFAIEHVEEF 214 (243)
T ss_dssp HSCCEEECCHHHHHHHHHHTTCEEEEEEEC
T ss_pred CceEEEeccHHHHHHHHHHcCCEeeeeccC
Confidence 11223468999999999999999998765
No 66
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=99.61 E-value=5.5e-15 Score=132.06 Aligned_cols=159 Identities=13% Similarity=0.149 Sum_probs=113.8
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeeccc-------ccccCCC-------CCCceEeeCC-
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDLPH-------VVPKVPD-------TDNLKFIAGD- 245 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~-------~~~~a~~-------~~~v~~~~~d- 245 (359)
..+++.+. ..+..+|||||||+|.++..+++.+ |+.+++++|++. +++.|++ .+++++..+|
T Consensus 33 ~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 110 (275)
T 3bkx_A 33 LAIAEAWQ--VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTN 110 (275)
T ss_dssp HHHHHHHT--CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCC
T ss_pred HHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECCh
Confidence 35566665 5677899999999999999999995 778999999954 6666552 2579999998
Q ss_pred CCC-C--CC--CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHH-HHhhhhhh--
Q 018205 246 MFQ-S--IP--PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEA-KLLYDMLM-- 317 (359)
Q Consensus 246 ~~~-~--~p--~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~-~~~~~~~~-- 317 (359)
+.. . ++ .||+|++..++|++++... +++.+.++++| ||.+++.+...+...... .... .......+
T Consensus 111 ~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~--~~~~~~~l~~~---gG~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 184 (275)
T 3bkx_A 111 LSDDLGPIADQHFDRVVLAHSLWYFASANA--LALLFKNMAAV---CDHVDVAEWSMQPTALDQ-IGHLQAAMIQGLLYA 184 (275)
T ss_dssp TTTCCGGGTTCCCSEEEEESCGGGSSCHHH--HHHHHHHHTTT---CSEEEEEEECSSCSSGGG-HHHHHHHHHHHHHHH
T ss_pred hhhccCCCCCCCEEEEEEccchhhCCCHHH--HHHHHHHHhCC---CCEEEEEEecCCCCchhh-hhHHHHHHHHHHHhh
Confidence 532 2 23 4999999999999987753 78888888887 899999998876543221 1110 00110000
Q ss_pred hh----hcCCcccCHHHHHHHHHHcCCceeEEEEe
Q 018205 318 MV----AVRGSERTEKEWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 318 ~~----~~~g~~~t~~~~~~ll~~aGf~~~~~~~~ 348 (359)
.. ......++.++|.++++++||+++++...
T Consensus 185 ~~~~~~~~~~~~~s~~~l~~~l~~aGf~~~~~~~~ 219 (275)
T 3bkx_A 185 IAPSDVANIRTLITPDTLAQIAHDNTWTYTAGTIV 219 (275)
T ss_dssp HSCCTTCSCCCCCCHHHHHHHHHHHTCEEEECCCB
T ss_pred ccccccccccccCCHHHHHHHHHHCCCeeEEEEEe
Confidence 00 01124679999999999999999888766
No 67
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=99.60 E-value=8.4e-16 Score=133.03 Aligned_cols=154 Identities=14% Similarity=0.123 Sum_probs=109.9
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCCCCCceEeeCCCCC----C-C-CC-c
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPDTDNLKFIAGDMFQ----S-I-PP-A 253 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~~v~~~~~d~~~----~-~-p~-~ 253 (359)
..++..+. ..+..+|||||||+|.++..+++. +.+++++|++. +++.+++..++.+..+|+.+ + . .. |
T Consensus 42 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~f 117 (227)
T 3e8s_A 42 QAILLAIL--GRQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDY 117 (227)
T ss_dssp HHHHHHHH--HTCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCE
T ss_pred HHHHHHhh--cCCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCc
Confidence 34555554 345689999999999999999988 67999999955 88888766788898888733 1 1 23 9
Q ss_pred cEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhh------hcCCcccC
Q 018205 254 DAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMV------AVRGSERT 327 (359)
Q Consensus 254 D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~g~~~t 327 (359)
|+|++.+++| ..+. ..+|++++++|+| ||.+++.+.......... +.. .+....... ......++
T Consensus 118 D~v~~~~~l~-~~~~--~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~ 188 (227)
T 3e8s_A 118 DLICANFALL-HQDI--IELLSAMRTLLVP---GGALVIQTLHPWSVADGD-YQD--GWREESFAGFAGDWQPMPWYFRT 188 (227)
T ss_dssp EEEEEESCCC-SSCC--HHHHHHHHHTEEE---EEEEEEEECCTTTTCTTC-CSC--EEEEECCTTSSSCCCCEEEEECC
T ss_pred cEEEECchhh-hhhH--HHHHHHHHHHhCC---CeEEEEEecCccccCccc-ccc--ccchhhhhccccCcccceEEEec
Confidence 9999999999 5444 5699999999999 899998886654332110 000 000000000 01123569
Q ss_pred HHHHHHHHHHcCCceeEEEEe
Q 018205 328 EKEWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 328 ~~~~~~ll~~aGf~~~~~~~~ 348 (359)
.++|.++|+++||+++++...
T Consensus 189 ~~~~~~~l~~aGf~~~~~~~~ 209 (227)
T 3e8s_A 189 LASWLNALDMAGLRLVSLQEP 209 (227)
T ss_dssp HHHHHHHHHHTTEEEEEEECC
T ss_pred HHHHHHHHHHcCCeEEEEecC
Confidence 999999999999999998763
No 68
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=99.60 E-value=4.7e-15 Score=129.99 Aligned_cols=150 Identities=13% Similarity=0.137 Sum_probs=103.5
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----CCCceEeeCCCCC-CCC-CccEEEEcc-hhcc
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----TDNLKFIAGDMFQ-SIP-PADAFFFKA-IFHA 264 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----~~~v~~~~~d~~~-~~p-~~D~i~~~~-vl~~ 264 (359)
+..+|||||||+|.++..+++. +.+++++|++. +++.+++ ..+++++.+|+.+ +.+ .||+|++.. ++|+
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~ 114 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNY 114 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGG
T ss_pred CCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCceEEEEcCccccc
Confidence 5689999999999999999988 56899999954 8877763 2279999999955 333 599999998 9999
Q ss_pred CCc-hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCc---chHH----HH---H--------HHhhhhhhhhhcC---
Q 018205 265 FVD-EDCLKILKRCREAIASRGDRGKVIIIDIVINEKKE---DAQL----TE---A--------KLLYDMLMMVAVR--- 322 (359)
Q Consensus 265 ~~~-~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~---~~~~----~~---~--------~~~~~~~~~~~~~--- 322 (359)
+++ ++..++|++++++|+| ||.+++.......... ...+ .. . .......+....+
T Consensus 115 ~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (246)
T 1y8c_A 115 IIDSDDLKKYFKAVSNHLKE---GGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGEFY 191 (246)
T ss_dssp CCSHHHHHHHHHHHHTTEEE---EEEEEEEEECHHHHHTTTTTCCEEEEETTEEEEEEEEEETTEEEEEEEEEEECSSSE
T ss_pred cCCHHHHHHHHHHHHHhcCC---CcEEEEEecCHHHHHhhcCcceEEecCCcEEEEEecccCCceEEEEEEEEEecCCcc
Confidence 953 5678899999999999 7877763322110000 0000 00 0 0000000000001
Q ss_pred --------CcccCHHHHHHHHHHcCCceeEEEEe
Q 018205 323 --------GSERTEKEWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 323 --------g~~~t~~~~~~ll~~aGf~~~~~~~~ 348 (359)
...++.++|.++|+++||+++++...
T Consensus 192 ~~~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~ 225 (246)
T 1y8c_A 192 KRFDEEHEERAYKEEDIEKYLKHGQLNILDKVDC 225 (246)
T ss_dssp EEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEES
T ss_pred cccEEEEEEEcCCHHHHHHHHHHCCCeEEEEEcc
Confidence 24569999999999999999999765
No 69
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=99.59 E-value=1e-14 Score=129.22 Aligned_cols=146 Identities=14% Similarity=0.146 Sum_probs=103.1
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----CCCceEeeCCCCC-CCC--CccEEEEcchh
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----TDNLKFIAGDMFQ-SIP--PADAFFFKAIF 262 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----~~~v~~~~~d~~~-~~p--~~D~i~~~~vl 262 (359)
..+..+|||||||+|.++..+++. +.+++++|++. +++.+++ ..+++++.+|+.+ +++ .||+|++.+++
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 114 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLW 114 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCG
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCch
Confidence 456789999999999999999987 67899999954 7776652 4689999999955 343 39999999999
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhc----CCcccCHHHHHHHHHHc
Q 018205 263 HAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAV----RGSERTEKEWEKLFLDA 338 (359)
Q Consensus 263 ~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~t~~~~~~ll~~a 338 (359)
|++++. ..++++++++|+| ||.+++. ...........+ ...+......... ....++.+++.++|+++
T Consensus 115 ~~~~~~--~~~l~~~~~~L~p---gG~l~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 186 (263)
T 2yqz_A 115 HLVPDW--PKVLAEAIRVLKP---GGALLEG-WDQAEASPEWTL--QERWRAFAAEEGFPVERGLHAKRLKEVEEALRRL 186 (263)
T ss_dssp GGCTTH--HHHHHHHHHHEEE---EEEEEEE-EEEECCCHHHHH--HHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHT
T ss_pred hhcCCH--HHHHHHHHHHCCC---CcEEEEE-ecCCCccHHHHH--HHHHHHHHHHhCCCcccccccCCHHHHHHHHHHc
Confidence 999764 5699999999999 8888887 222211110000 0001111100000 12356889999999999
Q ss_pred CCceeEEEE
Q 018205 339 GFSHFKITP 347 (359)
Q Consensus 339 Gf~~~~~~~ 347 (359)
||+++.+..
T Consensus 187 Gf~~~~~~~ 195 (263)
T 2yqz_A 187 GLKPRTREV 195 (263)
T ss_dssp TCCCEEEEE
T ss_pred CCCcceEEE
Confidence 999776543
No 70
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=99.58 E-value=9e-15 Score=126.30 Aligned_cols=137 Identities=17% Similarity=0.151 Sum_probs=101.4
Q ss_pred CCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCCCCCceEeeCCCCC-CCC--CccEEEEcchhccCCchHH
Q 018205 195 LGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPDTDNLKFIAGDMFQ-SIP--PADAFFFKAIFHAFVDEDC 270 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~~v~~~~~d~~~-~~p--~~D~i~~~~vl~~~~~~~~ 270 (359)
..+|||||||+|.++..+++. +++|++. +++.++.. +++++.+|+.+ +++ .||+|++.+++|++++.
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~-- 118 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR-GVFVLKGTAENLPLKDESFDFALMVTTICFVDDP-- 118 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT-TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCH--
T ss_pred CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc-CCEEEEcccccCCCCCCCeeEEEEcchHhhccCH--
Confidence 689999999999999988654 9999955 88777654 79999999855 343 49999999999999765
Q ss_pred HHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCceeEEEEe
Q 018205 271 LKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 271 ~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~~~~~ 348 (359)
..+|+++.++|+| ||.+++.+...... ....................++.++|.++|+++||+++++...
T Consensus 119 ~~~l~~~~~~L~p---gG~l~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~ 188 (219)
T 1vlm_A 119 ERALKEAYRILKK---GGYLIVGIVDRESF-----LGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQT 188 (219)
T ss_dssp HHHHHHHHHHEEE---EEEEEEEEECSSSH-----HHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHHHcCC---CcEEEEEEeCCccH-----HHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEecc
Confidence 5699999999999 89888877654321 1011000000000011235679999999999999999988766
No 71
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=99.58 E-value=1.7e-14 Score=122.29 Aligned_cols=143 Identities=13% Similarity=0.151 Sum_probs=109.7
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCC-CCC-C
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQ-SIP-P 252 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~-~~p-~ 252 (359)
..+++.++ ..+..+|||+|||+|.++..+++. +.+++++|++. +++.+++ ..++++..+|+.+ +.+ .
T Consensus 22 ~~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~ 97 (199)
T 2xvm_A 22 SEVLEAVK--VVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQ 97 (199)
T ss_dssp HHHHHHTT--TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCC
T ss_pred HHHHHHhh--ccCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCC
Confidence 35555555 445679999999999999999987 67999999954 8877652 2479999999855 333 4
Q ss_pred ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHH
Q 018205 253 ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWE 332 (359)
Q Consensus 253 ~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~ 332 (359)
||+|++..++|++++++...++++++++|+| ||.+++++.......... ......++.+++.
T Consensus 98 ~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~---gG~l~~~~~~~~~~~~~~---------------~~~~~~~~~~~l~ 159 (199)
T 2xvm_A 98 YDFILSTVVLMFLEAKTIPGLIANMQRCTKP---GGYNLIVAAMDTADYPCT---------------VGFPFAFKEGELR 159 (199)
T ss_dssp EEEEEEESCGGGSCGGGHHHHHHHHHHTEEE---EEEEEEEEEBCCSSSCCC---------------SCCSCCBCTTHHH
T ss_pred ceEEEEcchhhhCCHHHHHHHHHHHHHhcCC---CeEEEEEEeeccCCcCCC---------------CCCCCccCHHHHH
Confidence 9999999999999877788899999999999 899888877654432110 0112356889999
Q ss_pred HHHHHcCCceeEEEEe
Q 018205 333 KLFLDAGFSHFKITPV 348 (359)
Q Consensus 333 ~ll~~aGf~~~~~~~~ 348 (359)
++|++ |++++....
T Consensus 160 ~~~~~--f~~~~~~~~ 173 (199)
T 2xvm_A 160 RYYEG--WERVKYNED 173 (199)
T ss_dssp HHTTT--SEEEEEECC
T ss_pred HHhcC--CeEEEeccc
Confidence 99976 998877643
No 72
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=99.57 E-value=7.2e-15 Score=129.07 Aligned_cols=150 Identities=17% Similarity=0.209 Sum_probs=107.9
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC---CCCCceEeeCCCCC-CCC-------CccEEEEc
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP---DTDNLKFIAGDMFQ-SIP-------PADAFFFK 259 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~---~~~~v~~~~~d~~~-~~p-------~~D~i~~~ 259 (359)
..+..+|||||||+|.++..+++..+ +++++|++. +++.++ ...+++++++|+.+ +.+ .||+|++.
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~ 131 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMR 131 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEE
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEc
Confidence 45678999999999999999999976 799999955 887765 24589999999965 221 28999999
Q ss_pred chhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHH----HhhhhhhhhhcCCcccCHHHHHHHH
Q 018205 260 AIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAK----LLYDMLMMVAVRGSERTEKEWEKLF 335 (359)
Q Consensus 260 ~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~t~~~~~~ll 335 (359)
.++|++++++..++|++++++|+| ||.+++.+....+........... ......+........++.+++.++|
T Consensus 132 ~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (245)
T 3ggd_A 132 TGFHHIPVEKRELLGQSLRILLGK---QGAMYLIELGTGCIDFFNSLLEKYGQLPYELLLVMEHGIRPGIFTAEDIELYF 208 (245)
T ss_dssp SSSTTSCGGGHHHHHHHHHHHHTT---TCEEEEEEECTTHHHHHHHHHHHHSSCCHHHHHHHTTTCCCCCCCHHHHHHHC
T ss_pred chhhcCCHHHHHHHHHHHHHHcCC---CCEEEEEeCCccccHHHHHHHhCCCCCchhhhhccccCCCCCccCHHHHHHHh
Confidence 999999977888999999999999 999999987654321000000000 0000000000111246899999999
Q ss_pred HHcCCceeEEEEe
Q 018205 336 LDAGFSHFKITPV 348 (359)
Q Consensus 336 ~~aGf~~~~~~~~ 348 (359)
+||+++.....
T Consensus 209 --aGf~~~~~~~~ 219 (245)
T 3ggd_A 209 --PDFEILSQGEG 219 (245)
T ss_dssp --TTEEEEEEECC
T ss_pred --CCCEEEecccc
Confidence 99999886554
No 73
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=99.57 E-value=1.7e-14 Score=126.36 Aligned_cols=95 Identities=19% Similarity=0.382 Sum_probs=77.8
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----CCCceEeeCCCCC-CCC-CccEEEEcc-hhc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----TDNLKFIAGDMFQ-SIP-PADAFFFKA-IFH 263 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----~~~v~~~~~d~~~-~~p-~~D~i~~~~-vl~ 263 (359)
.+..+|||||||+|.++..+++. .+++++|++. +++.|++ ..+++++.+|+.+ +.+ .||+|++.. ++|
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~ 108 (243)
T 3d2l_A 32 EPGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITILCDSLN 108 (243)
T ss_dssp CTTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCEEEEEECTTGGG
T ss_pred CCCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCcCEEEEeCCchh
Confidence 34589999999999999999876 6899999954 8877762 3579999999855 333 499999986 999
Q ss_pred cC-CchHHHHHHHHHHHhcccCCCCcEEEEE
Q 018205 264 AF-VDEDCLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 264 ~~-~~~~~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
++ +.++..++|++++++|+| ||.+++.
T Consensus 109 ~~~~~~~~~~~l~~~~~~L~p---gG~l~~~ 136 (243)
T 3d2l_A 109 YLQTEADVKQTFDSAARLLTD---GGKLLFD 136 (243)
T ss_dssp GCCSHHHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHhcCC---CeEEEEE
Confidence 98 456678899999999999 7877763
No 74
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}
Probab=99.56 E-value=1e-14 Score=128.86 Aligned_cols=99 Identities=13% Similarity=0.185 Sum_probs=84.4
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCCCCCceEeeCCCCC-CCC--CccEEEEcchhccCCch
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPDTDNLKFIAGDMFQ-SIP--PADAFFFKAIFHAFVDE 268 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~~v~~~~~d~~~-~~p--~~D~i~~~~vl~~~~~~ 268 (359)
....+|||||||+|.++..|++.+ .+++++|+++ |++.|++..+++++++|+.+ +++ .||+|++..++|+++.
T Consensus 38 ~~~~~vLDvGcGtG~~~~~l~~~~--~~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~~~- 114 (257)
T 4hg2_A 38 PARGDALDCGCGSGQASLGLAEFF--ERVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWFDL- 114 (257)
T ss_dssp SCSSEEEEESCTTTTTHHHHHTTC--SEEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCCTTCCH-
T ss_pred CCCCCEEEEcCCCCHHHHHHHHhC--CEEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeehhHhhH-
Confidence 345799999999999999999874 5799999965 99999988999999999955 455 3999999999987753
Q ss_pred HHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 018205 269 DCLKILKRCREAIASRGDRGKVIIIDIVINE 299 (359)
Q Consensus 269 ~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~ 299 (359)
.+++++++++|+| ||.+++.......
T Consensus 115 --~~~~~e~~rvLkp---gG~l~~~~~~~~~ 140 (257)
T 4hg2_A 115 --DRFWAELRRVARP---GAVFAAVTYGLTR 140 (257)
T ss_dssp --HHHHHHHHHHEEE---EEEEEEEEECCCB
T ss_pred --HHHHHHHHHHcCC---CCEEEEEECCCCC
Confidence 3589999999999 9999888866543
No 75
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}
Probab=99.56 E-value=2e-14 Score=124.51 Aligned_cols=152 Identities=18% Similarity=0.266 Sum_probs=108.9
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCCCCCceEeeCCCCC---CCC--CccE
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPDTDNLKFIAGDMFQ---SIP--PADA 255 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~~v~~~~~d~~~---~~p--~~D~ 255 (359)
..+++.++ .+..+|||||||+|.++..+++. + .+++++|++. +++.++... .++..+|+.+ +++ .||+
T Consensus 23 ~~l~~~~~---~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~fD~ 96 (230)
T 3cc8_A 23 PNLLKHIK---KEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEKL-DHVVLGDIETMDMPYEEEQFDC 96 (230)
T ss_dssp HHHHTTCC---TTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTTS-SEEEESCTTTCCCCSCTTCEEE
T ss_pred HHHHHHhc---cCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHhC-CcEEEcchhhcCCCCCCCccCE
Confidence 45555554 45789999999999999999988 4 8999999955 777766432 3788888854 233 4999
Q ss_pred EEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhh------hhhhcCCcccCHH
Q 018205 256 FFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDML------MMVAVRGSERTEK 329 (359)
Q Consensus 256 i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~g~~~t~~ 329 (359)
|++.+++|++++. ..+|++++++|+| ||.+++..+....... . ........ .........++.+
T Consensus 97 v~~~~~l~~~~~~--~~~l~~~~~~L~~---gG~l~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (230)
T 3cc8_A 97 VIFGDVLEHLFDP--WAVIEKVKPYIKQ---NGVILASIPNVSHISV---L--APLLAGNWTYTEYGLLDKTHIRFFTFN 166 (230)
T ss_dssp EEEESCGGGSSCH--HHHHHHTGGGEEE---EEEEEEEEECTTSHHH---H--HHHHTTCCCCBSSSTTBTTCCCCCCHH
T ss_pred EEECChhhhcCCH--HHHHHHHHHHcCC---CCEEEEEeCCcchHHH---H--HHHhcCCceeccCCCCCcceEEEecHH
Confidence 9999999999876 4699999999999 8988887755432110 0 00000000 0001122457999
Q ss_pred HHHHHHHHcCCceeEEEEeC
Q 018205 330 EWEKLFLDAGFSHFKITPVY 349 (359)
Q Consensus 330 ~~~~ll~~aGf~~~~~~~~~ 349 (359)
+|.++|+++||+++++....
T Consensus 167 ~~~~~l~~~Gf~~~~~~~~~ 186 (230)
T 3cc8_A 167 EMLRMFLKAGYSISKVDRVY 186 (230)
T ss_dssp HHHHHHHHTTEEEEEEEEEE
T ss_pred HHHHHHHHcCCeEEEEEecc
Confidence 99999999999999888763
No 76
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=99.56 E-value=1.4e-14 Score=130.85 Aligned_cols=142 Identities=14% Similarity=0.158 Sum_probs=94.4
Q ss_pred CCCeEEEeCCCcchHHH----HHHHHCCCCeE--EEeeccc-ccccCCC-------CCCce--EeeCCCCC-C------C
Q 018205 194 GLGSLVDVGGGTGSFAR----IISEAFPGIKC--TVLDLPH-VVPKVPD-------TDNLK--FIAGDMFQ-S------I 250 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~----~l~~~~p~~~~--~~~D~~~-~~~~a~~-------~~~v~--~~~~d~~~-~------~ 250 (359)
+..+|||||||+|.++. .++.++|+.++ +++|++. |++.|++ ..+++ +..++..+ + +
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 131 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKK 131 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTT
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcccc
Confidence 45799999999997554 45566688754 9999965 8886652 12343 44555522 1 2
Q ss_pred C--CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCH
Q 018205 251 P--PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTE 328 (359)
Q Consensus 251 p--~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~ 328 (359)
+ .||+|++++++|+++|. .++|++++++|+| ||.+++...... .. +......+.-.+........++.
T Consensus 132 ~~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~Lkp---gG~l~i~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~ 201 (292)
T 2aot_A 132 ELQKWDFIHMIQMLYYVKDI--PATLKFFHSLLGT---NAKMLIIVVSGS-SG----WDKLWKKYGSRFPQDDLCQYITS 201 (292)
T ss_dssp CCCCEEEEEEESCGGGCSCH--HHHHHHHHHTEEE---EEEEEEEEECTT-SH----HHHHHHHHGGGSCCCTTCCCCCH
T ss_pred CCCceeEEEEeeeeeecCCH--HHHHHHHHHHcCC---CcEEEEEEecCC-cc----HHHHHHHHHHhccCCCcccCCCH
Confidence 2 49999999999999876 4599999999999 999999865421 11 11110000000000001245789
Q ss_pred HHHHHHHHHcCCceeEE
Q 018205 329 KEWEKLFLDAGFSHFKI 345 (359)
Q Consensus 329 ~~~~~ll~~aGf~~~~~ 345 (359)
++|.++|+++||+.+..
T Consensus 202 ~~~~~~l~~aGf~~~~~ 218 (292)
T 2aot_A 202 DDLTQMLDNLGLKYECY 218 (292)
T ss_dssp HHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHCCCceEEE
Confidence 99999999999998764
No 77
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=99.56 E-value=1.2e-14 Score=128.21 Aligned_cols=133 Identities=10% Similarity=0.028 Sum_probs=103.5
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----------------------CCCceEeeCCCCC
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----------------------TDNLKFIAGDMFQ 248 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----------------------~~~v~~~~~d~~~ 248 (359)
.+..+|||+|||+|..+..|++. +.+|+|+|+++ +++.|++ ..+++++++|+++
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~ 144 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD 144 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred CCCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence 35689999999999999999987 67999999965 8876631 2579999999976
Q ss_pred -CC---CCccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCc
Q 018205 249 -SI---PPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGS 324 (359)
Q Consensus 249 -~~---p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 324 (359)
+. ..||+|++..+|+++++++..+++++++++|+| ||.++++.......... ....
T Consensus 145 l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~Lkp---GG~l~l~~~~~~~~~~~-----------------g~~~ 204 (252)
T 2gb4_A 145 LPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRK---EFQYLVAVLSYDPTKHA-----------------GPPF 204 (252)
T ss_dssp GGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEE---EEEEEEEEEECCTTSCC-----------------CSSC
T ss_pred CCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCC---CeEEEEEEEecCCccCC-----------------CCCC
Confidence 32 359999999999999988888899999999999 89987766553321100 0011
Q ss_pred ccCHHHHHHHHHHcCCceeEEEEe
Q 018205 325 ERTEKEWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 325 ~~t~~~~~~ll~~aGf~~~~~~~~ 348 (359)
.++.+++.++|.. +|+++.....
T Consensus 205 ~~~~~el~~~l~~-~f~v~~~~~~ 227 (252)
T 2gb4_A 205 YVPSAELKRLFGT-KCSMQCLEEV 227 (252)
T ss_dssp CCCHHHHHHHHTT-TEEEEEEEEE
T ss_pred CCCHHHHHHHhhC-CeEEEEEecc
Confidence 2589999999987 5998777654
No 78
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=99.55 E-value=6.4e-14 Score=120.43 Aligned_cols=130 Identities=15% Similarity=0.157 Sum_probs=99.8
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCCCCCceEeeCCCCC-CCC--CccEEEEc
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPDTDNLKFIAGDMFQ-SIP--PADAFFFK 259 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~-~~p--~~D~i~~~ 259 (359)
.+++.+. ...+..+|||||||+|.++..++ .+++++|++.. ++++..+|+.+ +++ .||+|++.
T Consensus 57 ~~~~~l~-~~~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~--------~~~~~~~d~~~~~~~~~~fD~v~~~ 122 (215)
T 2zfu_A 57 RIARDLR-QRPASLVVADFGCGDCRLASSIR-----NPVHCFDLASL--------DPRVTVCDMAQVPLEDESVDVAVFC 122 (215)
T ss_dssp HHHHHHH-TSCTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS--------STTEEESCTTSCSCCTTCEEEEEEE
T ss_pred HHHHHHh-ccCCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC--------CceEEEeccccCCCCCCCEeEEEEe
Confidence 4555543 13456899999999999988773 57999999654 67888999865 343 49999999
Q ss_pred chhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcC
Q 018205 260 AIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAG 339 (359)
Q Consensus 260 ~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aG 339 (359)
.++| +.+ ...+|++++++|+| ||.+++.+.... ..+.++|.++|+++|
T Consensus 123 ~~l~-~~~--~~~~l~~~~~~L~~---gG~l~i~~~~~~--------------------------~~~~~~~~~~l~~~G 170 (215)
T 2zfu_A 123 LSLM-GTN--IRDFLEEANRVLKP---GGLLKVAEVSSR--------------------------FEDVRTFLRAVTKLG 170 (215)
T ss_dssp SCCC-SSC--HHHHHHHHHHHEEE---EEEEEEEECGGG--------------------------CSCHHHHHHHHHHTT
T ss_pred hhcc-ccC--HHHHHHHHHHhCCC---CeEEEEEEcCCC--------------------------CCCHHHHHHHHHHCC
Confidence 9998 443 46799999999999 899998763210 127899999999999
Q ss_pred CceeEEEEeCCceeEEEEe
Q 018205 340 FSHFKITPVYGIKSLIEVY 358 (359)
Q Consensus 340 f~~~~~~~~~~~~~vi~~~ 358 (359)
|++++.........++.++
T Consensus 171 f~~~~~~~~~~~~~~~~~~ 189 (215)
T 2zfu_A 171 FKIVSKDLTNSHFFLFDFQ 189 (215)
T ss_dssp EEEEEEECCSTTCEEEEEE
T ss_pred CEEEEEecCCCeEEEEEEE
Confidence 9998877666666666655
No 79
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=99.52 E-value=3.8e-14 Score=134.40 Aligned_cols=149 Identities=13% Similarity=0.160 Sum_probs=107.2
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCCCCCceEeeCCCCC----CC----CC
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPDTDNLKFIAGDMFQ----SI----PP 252 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~~v~~~~~d~~~----~~----p~ 252 (359)
..+++.+. ..+..+|||||||+|.++..+++. +.+++++|++. +++.|++. .+......+.. .. ..
T Consensus 97 ~~l~~~~~--~~~~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~l~~~~~~ 171 (416)
T 4e2x_A 97 RDFLATEL--TGPDPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKAREK-GIRVRTDFFEKATADDVRRTEGP 171 (416)
T ss_dssp HHHHHTTT--CSSSCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHTT-TCCEECSCCSHHHHHHHHHHHCC
T ss_pred HHHHHHhC--CCCCCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHHc-CCCcceeeechhhHhhcccCCCC
Confidence 45666665 566789999999999999999987 56899999965 88877654 34333332211 11 24
Q ss_pred ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHH
Q 018205 253 ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWE 332 (359)
Q Consensus 253 ~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~ 332 (359)
||+|++.+++||+++. ..+|++++++|+| ||.+++..+..... ... ..++. ....+...++.++|.
T Consensus 172 fD~I~~~~vl~h~~d~--~~~l~~~~r~Lkp---gG~l~i~~~~~~~~------~~~-~~~~~--~~~~~~~~~s~~~l~ 237 (416)
T 4e2x_A 172 ANVIYAANTLCHIPYV--QSVLEGVDALLAP---DGVFVFEDPYLGDI------VAK-TSFDQ--IFDEHFFLFSATSVQ 237 (416)
T ss_dssp EEEEEEESCGGGCTTH--HHHHHHHHHHEEE---EEEEEEEEECHHHH------HHH-TCGGG--CSTTCCEECCHHHHH
T ss_pred EEEEEECChHHhcCCH--HHHHHHHHHHcCC---CeEEEEEeCChHHh------hhh-cchhh--hhhhhhhcCCHHHHH
Confidence 9999999999999755 5699999999999 88888865443211 010 11111 112344568999999
Q ss_pred HHHHHcCCceeEEEEeC
Q 018205 333 KLFLDAGFSHFKITPVY 349 (359)
Q Consensus 333 ~ll~~aGf~~~~~~~~~ 349 (359)
++|+++||+++++...+
T Consensus 238 ~ll~~aGf~~~~~~~~~ 254 (416)
T 4e2x_A 238 GMAQRCGFELVDVQRLP 254 (416)
T ss_dssp HHHHHTTEEEEEEEEEC
T ss_pred HHHHHcCCEEEEEEEcc
Confidence 99999999999998864
No 80
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=99.52 E-value=4.2e-14 Score=128.06 Aligned_cols=98 Identities=19% Similarity=0.190 Sum_probs=83.1
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeeccc-ccccCCC--------CCCceEeeCCCCC-CC--------CCc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDLPH-VVPKVPD--------TDNLKFIAGDMFQ-SI--------PPA 253 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~-~~~~a~~--------~~~v~~~~~d~~~-~~--------p~~ 253 (359)
.+..+|||||||+|.++..+++.+ +..+++++|++. +++.|++ ..+++++++|+.+ ++ ..|
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 114 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI 114 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence 467899999999999999999987 889999999955 8887752 5799999999965 22 249
Q ss_pred cEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 254 DAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 254 D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
|+|++..++|++ +. .+++++++++|+| ||.+++.+..
T Consensus 115 D~V~~~~~l~~~-~~--~~~l~~~~~~Lkp---gG~l~i~~~~ 151 (299)
T 3g5t_A 115 DMITAVECAHWF-DF--EKFQRSAYANLRK---DGTIAIWGYA 151 (299)
T ss_dssp EEEEEESCGGGS-CH--HHHHHHHHHHEEE---EEEEEEEEEE
T ss_pred eEEeHhhHHHHh-CH--HHHHHHHHHhcCC---CcEEEEEecC
Confidence 999999999999 44 6799999999999 8999885544
No 81
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Probab=99.52 E-value=2.7e-14 Score=126.66 Aligned_cols=140 Identities=14% Similarity=0.163 Sum_probs=102.7
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC---CC-------------------------------
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD---TD------------------------------- 237 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~---~~------------------------------- 237 (359)
.+..+|||||||+|.++..+++..+ .+++++|++. +++.+++ ..
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 133 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR 133 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence 3567999999999999999888755 5899999965 7777642 11
Q ss_pred -Cc-eEeeCCCCCC-C------CCccEEEEcchhccCCc--hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHH
Q 018205 238 -NL-KFIAGDMFQS-I------PPADAFFFKAIFHAFVD--EDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQL 306 (359)
Q Consensus 238 -~v-~~~~~d~~~~-~------p~~D~i~~~~vl~~~~~--~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~ 306 (359)
++ +++.+|+.+. . ..||+|++..++|+++. ++...+|++++++|+| ||.+++.+......
T Consensus 134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~~~~~~~------ 204 (265)
T 2i62_A 134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKP---GGFLVMVDALKSSY------ 204 (265)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEESSCCE------
T ss_pred hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCC---CcEEEEEecCCCce------
Confidence 17 8999998652 1 24999999999995543 3667899999999999 89988887443211
Q ss_pred HHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCceeEEEEeC
Q 018205 307 TEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPVY 349 (359)
Q Consensus 307 ~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~~~~~~ 349 (359)
+...- .......++.+++.++|+++||+++++....
T Consensus 205 ------~~~~~-~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 240 (265)
T 2i62_A 205 ------YMIGE-QKFSSLPLGWETVRDAVEEAGYTIEQFEVIS 240 (265)
T ss_dssp ------EEETT-EEEECCCCCHHHHHHHHHHTTCEEEEEEEEC
T ss_pred ------EEcCC-ccccccccCHHHHHHHHHHCCCEEEEEEEec
Confidence 00000 0011234688999999999999999888764
No 82
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=99.50 E-value=9.1e-15 Score=129.97 Aligned_cols=140 Identities=14% Similarity=0.127 Sum_probs=98.8
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC----C-------------------------------
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD----T------------------------------- 236 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~----~------------------------------- 236 (359)
.+..+|||||||+|.++..++... ..+++++|+++ +++.|++ .
T Consensus 54 ~~g~~vLDiGCG~G~~~~~~~~~~-~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~ 132 (263)
T 2a14_A 54 LQGDTLIDIGSGPTIYQVLAACDS-FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 132 (263)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGT-EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCceEEEeCCCccHHHHHHHHhh-hcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHH
Confidence 456799999999998877666542 12699999965 8876542 0
Q ss_pred CCce-EeeCCCCCC-------CCCccEEEEcchhccCC--chHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHH
Q 018205 237 DNLK-FIAGDMFQS-------IPPADAFFFKAIFHAFV--DEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQL 306 (359)
Q Consensus 237 ~~v~-~~~~d~~~~-------~p~~D~i~~~~vl~~~~--~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~ 306 (359)
.+++ ++++|+.+. .+.||+|+++.+||+.. .++..++|++++++||| ||.+++.+.......
T Consensus 133 ~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKP---GG~li~~~~~~~~~~----- 204 (263)
T 2a14_A 133 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKP---GGHLVTTVTLRLPSY----- 204 (263)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEESSCCEE-----
T ss_pred hhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCC---CcEEEEEEeecCccc-----
Confidence 0133 888998652 23599999999999853 35667899999999999 899988765432110
Q ss_pred HHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCceeEEEEeC
Q 018205 307 TEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPVY 349 (359)
Q Consensus 307 ~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~~~~~~ 349 (359)
...-. ......++.+++.++|+++||+++++....
T Consensus 205 -----~~g~~---~~~~~~~~~~~l~~~l~~aGF~i~~~~~~~ 239 (263)
T 2a14_A 205 -----MVGKR---EFSCVALEKGEVEQAVLDAGFDIEQLLHSP 239 (263)
T ss_dssp -----EETTE---EEECCCCCHHHHHHHHHHTTEEEEEEEEEC
T ss_pred -----eeCCe---EeeccccCHHHHHHHHHHCCCEEEEEeecc
Confidence 00000 011124689999999999999999887653
No 83
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=99.50 E-value=3.7e-13 Score=111.42 Aligned_cols=127 Identities=15% Similarity=0.203 Sum_probs=99.1
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCCCCCceEeeCCCCCCCC--CccEEEEcchhccCCch-
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPDTDNLKFIAGDMFQSIP--PADAFFFKAIFHAFVDE- 268 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~~v~~~~~d~~~~~p--~~D~i~~~~vl~~~~~~- 268 (359)
.+..+|||+|||+|.++..+++.. +++++|++. +++. .++++++.+|+.++.+ .||+|+++..++..++.
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~---~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~~~~~~~ 95 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES---HRGGNLVRADLLCSINQESVDVVVFNPPYVPDTDDP 95 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT---CSSSCEEECSTTTTBCGGGCSEEEECCCCBTTCCCT
T ss_pred CCCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc---ccCCeEEECChhhhcccCCCCEEEECCCCccCCccc
Confidence 345799999999999999999886 999999955 7777 5689999999977555 49999999888865543
Q ss_pred ------HHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCce
Q 018205 269 ------DCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSH 342 (359)
Q Consensus 269 ------~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~ 342 (359)
+...+++++.+.+ | ||.+++..... .+.+++.++++++||+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~l-p---gG~l~~~~~~~----------------------------~~~~~l~~~l~~~gf~~ 143 (170)
T 3q87_B 96 IIGGGYLGREVIDRFVDAV-T---VGMLYLLVIEA----------------------------NRPKEVLARLEERGYGT 143 (170)
T ss_dssp TTBCCGGGCHHHHHHHHHC-C---SSEEEEEEEGG----------------------------GCHHHHHHHHHHTTCEE
T ss_pred cccCCcchHHHHHHHHhhC-C---CCEEEEEEecC----------------------------CCHHHHHHHHHHCCCcE
Confidence 3456889999999 8 89998866321 14567889999999998
Q ss_pred eEEEEe-CCceeEEEE
Q 018205 343 FKITPV-YGIKSLIEV 357 (359)
Q Consensus 343 ~~~~~~-~~~~~vi~~ 357 (359)
..+... .+...++..
T Consensus 144 ~~~~~~~~~~e~~~~~ 159 (170)
T 3q87_B 144 RILKVRKILGETVYII 159 (170)
T ss_dssp EEEEEEECSSSEEEEE
T ss_pred EEEEeeccCCceEEEE
Confidence 888766 344444443
No 84
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=99.49 E-value=1e-13 Score=118.32 Aligned_cols=130 Identities=12% Similarity=0.127 Sum_probs=103.8
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCCCCC-CccEEEEcchhcc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQSIP-PADAFFFKAIFHA 264 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~~~p-~~D~i~~~~vl~~ 264 (359)
.+..+|||+|||+|.++..+++ .+..+++++|++. +++.|++ ..++++..+|+.+..+ .||+|+++..+++
T Consensus 59 ~~~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~~~~~ 137 (205)
T 3grz_A 59 VKPLTVADVGTGSGILAIAAHK-LGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILAEI 137 (205)
T ss_dssp SSCCEEEEETCTTSHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEESCHHH
T ss_pred cCCCEEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECCcHHH
Confidence 4578999999999999999876 4667999999954 8877762 2249999999976443 5999999888765
Q ss_pred CCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCceeE
Q 018205 265 FVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFK 344 (359)
Q Consensus 265 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~ 344 (359)
+ ..++++++++|+| ||.+++.+.... +.+++.++++++||+.++
T Consensus 138 ~-----~~~l~~~~~~L~~---gG~l~~~~~~~~----------------------------~~~~~~~~~~~~Gf~~~~ 181 (205)
T 3grz_A 138 L-----LDLIPQLDSHLNE---DGQVIFSGIDYL----------------------------QLPKIEQALAENSFQIDL 181 (205)
T ss_dssp H-----HHHGGGSGGGEEE---EEEEEEEEEEGG----------------------------GHHHHHHHHHHTTEEEEE
T ss_pred H-----HHHHHHHHHhcCC---CCEEEEEecCcc----------------------------cHHHHHHHHHHcCCceEE
Confidence 3 5799999999999 888888553321 356788999999999999
Q ss_pred EEEeCCceeEEEEeC
Q 018205 345 ITPVYGIKSLIEVYP 359 (359)
Q Consensus 345 ~~~~~~~~~vi~~~~ 359 (359)
+.....+.+++.-+|
T Consensus 182 ~~~~~~w~~~~~~~~ 196 (205)
T 3grz_A 182 KMRAGRWIGLAISRK 196 (205)
T ss_dssp EEEETTEEEEEEEEC
T ss_pred eeccCCEEEEEEecc
Confidence 998888888876554
No 85
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=99.48 E-value=3.6e-14 Score=121.33 Aligned_cols=150 Identities=13% Similarity=0.088 Sum_probs=105.1
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----CCCceEeeCCCCC-CCC--CccEEEEcchhc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----TDNLKFIAGDMFQ-SIP--PADAFFFKAIFH 263 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----~~~v~~~~~d~~~-~~p--~~D~i~~~~vl~ 263 (359)
.+..+|||+|||+|..+..++.. ++.+++++|++. +++.+++ ..+++++.+|+.+ +++ .||+|++..++|
T Consensus 22 ~~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 100 (209)
T 2p8j_A 22 NLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTIF 100 (209)
T ss_dssp SSCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCGG
T ss_pred CCCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChHH
Confidence 45689999999999985544443 467999999955 8877663 3679999999965 443 499999999999
Q ss_pred cCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhh-hhhcCCcccCHHHHHHHHHHcCCce
Q 018205 264 AFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLM-MVAVRGSERTEKEWEKLFLDAGFSH 342 (359)
Q Consensus 264 ~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~t~~~~~~ll~~aGf~~ 342 (359)
+++.++..+++++++++|+| ||.+++.+...++.............+.... ........++.+++.++|.++||..
T Consensus 101 ~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~ 177 (209)
T 2p8j_A 101 HMRKNDVKEAIDEIKRVLKP---GGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVLF 177 (209)
T ss_dssp GSCHHHHHHHHHHHHHHEEE---EEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTTSEEEE
T ss_pred hCCHHHHHHHHHHHHHHcCC---CcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHHHhhcCcee
Confidence 99877788999999999999 8999998877654321000000000000000 0001124679999999999999986
Q ss_pred eEEE
Q 018205 343 FKIT 346 (359)
Q Consensus 343 ~~~~ 346 (359)
.+..
T Consensus 178 ~~~~ 181 (209)
T 2p8j_A 178 KEDR 181 (209)
T ss_dssp EEEE
T ss_pred eeee
Confidence 6543
No 86
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=99.48 E-value=1.9e-13 Score=122.77 Aligned_cols=141 Identities=16% Similarity=0.189 Sum_probs=107.0
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----CCCceEeeCCCCC-CCC-Cc
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----TDNLKFIAGDMFQ-SIP-PA 253 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----~~~v~~~~~d~~~-~~p-~~ 253 (359)
..+++.++ ..+..+|||+|||+|.++..+++. +.+++++|++. +++.++. ..++++..+|+.+ +.+ .|
T Consensus 110 ~~~~~~~~--~~~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~f 185 (286)
T 3m70_A 110 GDVVDAAK--IISPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENY 185 (286)
T ss_dssp HHHHHHHH--HSCSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCE
T ss_pred HHHHHHhh--ccCCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCCc
Confidence 45555554 346789999999999999999988 66999999955 8877662 2389999999965 233 49
Q ss_pred cEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHH
Q 018205 254 DAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEK 333 (359)
Q Consensus 254 D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ 333 (359)
|+|+++.++|++++++...++++++++|+| ||.++++..........+ ......++.+++.+
T Consensus 186 D~i~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~---------------~~~~~~~~~~~l~~ 247 (286)
T 3m70_A 186 DFIVSTVVFMFLNRERVPSIIKNMKEHTNV---GGYNLIVAAMSTDDVPCP---------------LPFSFTFAENELKE 247 (286)
T ss_dssp EEEEECSSGGGSCGGGHHHHHHHHHHTEEE---EEEEEEEEEBCCSSSCCS---------------SCCSCCBCTTHHHH
T ss_pred cEEEEccchhhCCHHHHHHHHHHHHHhcCC---CcEEEEEEecCCCCCCCC---------------CCccccCCHHHHHH
Confidence 999999999999988888999999999999 898787766544322110 01123467888988
Q ss_pred HHHHcCCceeEEE
Q 018205 334 LFLDAGFSHFKIT 346 (359)
Q Consensus 334 ll~~aGf~~~~~~ 346 (359)
++.. |.++...
T Consensus 248 ~~~~--~~~~~~~ 258 (286)
T 3m70_A 248 YYKD--WEFLEYN 258 (286)
T ss_dssp HTTT--SEEEEEE
T ss_pred HhcC--CEEEEEE
Confidence 8854 8887764
No 87
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Probab=99.48 E-value=1.7e-14 Score=130.17 Aligned_cols=108 Identities=18% Similarity=0.192 Sum_probs=85.8
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC----------CCCceEeeCCCCC-C
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD----------TDNLKFIAGDMFQ-S 249 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~----------~~~v~~~~~d~~~-~ 249 (359)
+.+.+.++ ..+..+|||||||+|.++..+++. +.+++++|++. +++.|++ ..++.+..+|+.+ +
T Consensus 47 ~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~ 122 (293)
T 3thr_A 47 AWLLGLLR--QHGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLD 122 (293)
T ss_dssp HHHHHHHH--HTTCCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHH
T ss_pred HHHHHHhc--ccCCCEEEEecCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCc
Confidence 34444444 345789999999999999999998 55999999965 8877752 2577889999855 2
Q ss_pred ---CC--CccEEEEc-chhccCCc-----hHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 250 ---IP--PADAFFFK-AIFHAFVD-----EDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 250 ---~p--~~D~i~~~-~vl~~~~~-----~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
++ .||+|++. +++||+++ ++..++|++++++|+| ||.+++..+.
T Consensus 123 ~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~ 177 (293)
T 3thr_A 123 KDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRP---GGLLVIDHRN 177 (293)
T ss_dssp HHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEE---EEEEEEEEEC
T ss_pred cccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCC---CeEEEEEeCC
Confidence 33 49999998 99999988 6678899999999999 8888887654
No 88
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=99.47 E-value=7.3e-14 Score=126.06 Aligned_cols=153 Identities=14% Similarity=0.027 Sum_probs=106.5
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCC-CC-C--CccEEEEcc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQ-SI-P--PADAFFFKA 260 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~-~~-p--~~D~i~~~~ 260 (359)
.+..+|||||||+|.++..+++. +..+++++|++. +++.|++ ..+++++.+|+.+ ++ + .||+|++..
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~ 141 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF 141 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred CCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECc
Confidence 46789999999999999998876 455999999954 8877662 2468999999965 44 2 499999999
Q ss_pred hhcc--CCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCc--------chHH----------HH-HHHhhhhhhhh
Q 018205 261 IFHA--FVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKE--------DAQL----------TE-AKLLYDMLMMV 319 (359)
Q Consensus 261 vl~~--~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~--------~~~~----------~~-~~~~~~~~~~~ 319 (359)
++|+ ...++..++|++++++|+| ||.+++..+....... ...+ .. ....+.+.+..
T Consensus 142 ~l~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ 218 (298)
T 1ri5_A 142 SFHYAFSTSESLDIAQRNIARHLRP---GGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLD 218 (298)
T ss_dssp CGGGGGSSHHHHHHHHHHHHHTEEE---EEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETT
T ss_pred hhhhhcCCHHHHHHHHHHHHHhcCC---CCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEch
Confidence 9998 5566778899999999999 8988887754321000 0000 00 00000000000
Q ss_pred ---hcCCcccCHHHHHHHHHHcCCceeEEEEeC
Q 018205 320 ---AVRGSERTEKEWEKLFLDAGFSHFKITPVY 349 (359)
Q Consensus 320 ---~~~g~~~t~~~~~~ll~~aGf~~~~~~~~~ 349 (359)
......++.++|.++|+++||+++++....
T Consensus 219 ~~~~~~~~~~~~~~l~~ll~~aGf~~v~~~~~~ 251 (298)
T 1ri5_A 219 SVNNCIEYFVDFTRMVDGFKRLGLSLVERKGFI 251 (298)
T ss_dssp SCSSEEEECCCHHHHHHHHHTTTEEEEEEEEHH
T ss_pred hhcCCcccccCHHHHHHHHHHcCCEEEEecCHH
Confidence 011245689999999999999999887653
No 89
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=99.46 E-value=1.4e-12 Score=114.80 Aligned_cols=104 Identities=23% Similarity=0.322 Sum_probs=81.8
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----CCCceEeeCCCCC-CCC-Ccc
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----TDNLKFIAGDMFQ-SIP-PAD 254 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----~~~v~~~~~d~~~-~~p-~~D 254 (359)
.++.... ..+..+|||+|||+|.++..+++. +.+++++|++. +++.|++ ..+++++.+|+.+ +.+ .||
T Consensus 32 ~~~~~~~--~~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD 107 (252)
T 1wzn_A 32 EIFKEDA--KREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFD 107 (252)
T ss_dssp HHHHHTC--SSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEE
T ss_pred HHHHHhc--ccCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCcc
Confidence 4444443 345689999999999999999987 67999999954 8877762 3479999999965 333 499
Q ss_pred EEEEc-chhccCCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 018205 255 AFFFK-AIFHAFVDEDCLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 255 ~i~~~-~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
+|++. ..+++++.++..++|++++++|+| ||.+++.
T Consensus 108 ~v~~~~~~~~~~~~~~~~~~l~~~~~~L~p---gG~li~~ 144 (252)
T 1wzn_A 108 AVTMFFSTIMYFDEEDLRKLFSKVAEALKP---GGVFITD 144 (252)
T ss_dssp EEEECSSGGGGSCHHHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred EEEEcCCchhcCCHHHHHHHHHHHHHHcCC---CeEEEEe
Confidence 99986 566777777788999999999999 7877654
No 90
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=99.46 E-value=3.2e-14 Score=128.18 Aligned_cols=139 Identities=14% Similarity=0.174 Sum_probs=96.2
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC----C----------C---------------------
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD----T----------D--------------------- 237 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~----~----------~--------------------- 237 (359)
+..+|||||||+|.+... +...+..+++++|+++ +++.|++ . .
T Consensus 71 ~~~~vLDiGcG~G~~~~l-~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLL-SACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp CCSEEEEETCTTCCGGGT-TGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHHHH-hhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 568999999999995543 3333456999999965 8875542 0 0
Q ss_pred -CceEeeCCCCCC-------CCC--ccEEEEcchhccCCch--HHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchH
Q 018205 238 -NLKFIAGDMFQS-------IPP--ADAFFFKAIFHAFVDE--DCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQ 305 (359)
Q Consensus 238 -~v~~~~~d~~~~-------~p~--~D~i~~~~vl~~~~~~--~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~ 305 (359)
.++++.+|+.+. ++. ||+|+++.+||++.++ +..++|++++++|+| ||.+++.+........
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~Lkp---GG~l~~~~~~~~~~~~--- 223 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRP---GGHLLLIGALEESWYL--- 223 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEEESCCEEE---
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCC---CCEEEEEEecCcceEE---
Confidence 134566688542 222 9999999999995533 667899999999999 8999987644321100
Q ss_pred HHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCceeEEEEeC
Q 018205 306 LTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPVY 349 (359)
Q Consensus 306 ~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~~~~~~ 349 (359)
..+. ......++.++|.++|+++||+++++....
T Consensus 224 ------~~~~----~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 257 (289)
T 2g72_A 224 ------AGEA----RLTVVPVSEEEVREALVRSGYKVRDLRTYI 257 (289)
T ss_dssp ------ETTE----EEECCCCCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred ------cCCe----eeeeccCCHHHHHHHHHHcCCeEEEeeEee
Confidence 0000 011235689999999999999998887654
No 91
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}
Probab=99.45 E-value=1.8e-13 Score=117.93 Aligned_cols=149 Identities=11% Similarity=0.075 Sum_probs=96.9
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-cccc----CC------CCCCceEeeCCCCC-CC
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPK----VP------DTDNLKFIAGDMFQ-SI 250 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~----a~------~~~~v~~~~~d~~~-~~ 250 (359)
..+..+. ..+..+|||||||+|.++..+++.+|+.+++++|++. +++. |+ ..++++++.+|+.+ ++
T Consensus 18 ~~~~~l~--~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~ 95 (218)
T 3mq2_A 18 AEFEQLR--SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPP 95 (218)
T ss_dssp HHHHHHH--TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCS
T ss_pred HHHHHhh--ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCC
Confidence 3444444 4567899999999999999999999999999999955 6664 22 24589999999965 33
Q ss_pred C-CccEEE---Ecchhc--cCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCc
Q 018205 251 P-PADAFF---FKAIFH--AFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGS 324 (359)
Q Consensus 251 p-~~D~i~---~~~vl~--~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 324 (359)
+ ..|.|+ ....++ ++++. ..+|++++++|+| ||.+++............ . ..+. .....
T Consensus 96 ~~~~d~v~~~~~~~~~~~~~~~~~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~---~---~~~~----~~~~~ 160 (218)
T 3mq2_A 96 LSGVGELHVLMPWGSLLRGVLGSS--PEMLRGMAAVCRP---GASFLVALNLHAWRPSVP---E---VGEH----PEPTP 160 (218)
T ss_dssp CCCEEEEEEESCCHHHHHHHHTSS--SHHHHHHHHTEEE---EEEEEEEEEGGGBTTBCG---G---GTTC----CCCCH
T ss_pred CCCCCEEEEEccchhhhhhhhccH--HHHHHHHHHHcCC---CcEEEEEecccccccccc---c---cccC----Cccch
Confidence 3 125554 222332 44444 4699999999999 888887332221111100 0 0000 00111
Q ss_pred ccCHHHHHHHHHHcCCceeEEEEe
Q 018205 325 ERTEKEWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 325 ~~t~~~~~~ll~~aGf~~~~~~~~ 348 (359)
.+..+++.++++++||++.++...
T Consensus 161 ~~~~~~l~~~l~~aGf~i~~~~~~ 184 (218)
T 3mq2_A 161 DSADEWLAPRYAEAGWKLADCRYL 184 (218)
T ss_dssp HHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCceeeecc
Confidence 223456888999999999888765
No 92
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=99.45 E-value=1.1e-12 Score=111.82 Aligned_cols=120 Identities=16% Similarity=0.244 Sum_probs=95.8
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCCCC---CC
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQSI---PP 252 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~~~---p~ 252 (359)
.++..+. ..+..+|||+|||+|.++..+++..|..+++++|++. +++.|++ .++++++.+|+.+.. +.
T Consensus 31 ~~l~~l~--~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 108 (204)
T 3e05_A 31 VTLSKLR--LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPD 108 (204)
T ss_dssp HHHHHTT--CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCC
T ss_pred HHHHHcC--CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCC
Confidence 4555665 5677899999999999999999999999999999954 8877763 368999999996533 45
Q ss_pred ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHH
Q 018205 253 ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWE 332 (359)
Q Consensus 253 ~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~ 332 (359)
||+|++...++ +..++++++.++|+| ||.+++...... +.+++.
T Consensus 109 ~D~i~~~~~~~-----~~~~~l~~~~~~Lkp---gG~l~~~~~~~~----------------------------~~~~~~ 152 (204)
T 3e05_A 109 PDRVFIGGSGG-----MLEEIIDAVDRRLKS---EGVIVLNAVTLD----------------------------TLTKAV 152 (204)
T ss_dssp CSEEEESCCTT-----CHHHHHHHHHHHCCT---TCEEEEEECBHH----------------------------HHHHHH
T ss_pred CCEEEECCCCc-----CHHHHHHHHHHhcCC---CeEEEEEecccc----------------------------cHHHHH
Confidence 99999988775 345799999999999 899888543210 345677
Q ss_pred HHHHHcCC
Q 018205 333 KLFLDAGF 340 (359)
Q Consensus 333 ~ll~~aGf 340 (359)
++++++||
T Consensus 153 ~~l~~~g~ 160 (204)
T 3e05_A 153 EFLEDHGY 160 (204)
T ss_dssp HHHHHTTC
T ss_pred HHHHHCCC
Confidence 88899998
No 93
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=99.44 E-value=2.6e-13 Score=116.17 Aligned_cols=143 Identities=11% Similarity=0.066 Sum_probs=99.8
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCC-eEEEeeccc-ccccCCC-CCCceEeeCCCCC-CCC--CccEE
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGI-KCTVLDLPH-VVPKVPD-TDNLKFIAGDMFQ-SIP--PADAF 256 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~~~-~~~~a~~-~~~v~~~~~d~~~-~~p--~~D~i 256 (359)
.++..+. .+..+|||||||+|.++..+ +. +++++|++. +++.+++ ..+++++.+|+.+ +++ .||+|
T Consensus 28 ~~l~~~~---~~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v 99 (211)
T 2gs9_A 28 RALKGLL---PPGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVV 99 (211)
T ss_dssp HHHHTTC---CCCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEE
T ss_pred HHHHHhc---CCCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEE
Confidence 3444443 36789999999999998877 45 899999954 8877663 3689999999965 444 49999
Q ss_pred EEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhh-hhhhhcCCcccCHHHHHHHH
Q 018205 257 FFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDM-LMMVAVRGSERTEKEWEKLF 335 (359)
Q Consensus 257 ~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~t~~~~~~ll 335 (359)
++.+++|++++. .++|++++++|+| ||.+++.+...... .......... ..........++.+++.++|
T Consensus 100 ~~~~~l~~~~~~--~~~l~~~~~~L~p---gG~l~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l 169 (211)
T 2gs9_A 100 LLFTTLEFVEDV--ERVLLEARRVLRP---GGALVVGVLEALSP-----WAALYRRLGEKGVLPWAQARFLAREDLKALL 169 (211)
T ss_dssp EEESCTTTCSCH--HHHHHHHHHHEEE---EEEEEEEEECTTSH-----HHHHHHHHHHTTCTTGGGCCCCCHHHHHHHH
T ss_pred EEcChhhhcCCH--HHHHHHHHHHcCC---CCEEEEEecCCcCc-----HHHHHHHHhhccCccccccccCCHHHHHHHh
Confidence 999999999765 5699999999999 89998887654321 1010000000 00001124568999999999
Q ss_pred HHcCCceeEEEE
Q 018205 336 LDAGFSHFKITP 347 (359)
Q Consensus 336 ~~aGf~~~~~~~ 347 (359)
+ | .+++..
T Consensus 170 ~--G--~~~~~~ 177 (211)
T 2gs9_A 170 G--P--PEAEGE 177 (211)
T ss_dssp C--S--CSEEEE
T ss_pred c--C--cceeEE
Confidence 8 7 444443
No 94
>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*
Probab=99.42 E-value=7e-13 Score=116.69 Aligned_cols=141 Identities=21% Similarity=0.287 Sum_probs=99.8
Q ss_pred CCCeEEEeCCCc---chHHHHHHHHCCCCeEEEeecc-cccccCCC------CCCceEeeCCCCCC-----CC----Ccc
Q 018205 194 GLGSLVDVGGGT---GSFARIISEAFPGIKCTVLDLP-HVVPKVPD------TDNLKFIAGDMFQS-----IP----PAD 254 (359)
Q Consensus 194 ~~~~vlDvG~G~---G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~------~~~v~~~~~d~~~~-----~p----~~D 254 (359)
+..+|||||||+ |.....+.+..|+.+++++|.+ .|++.|+. ..+++++++|+.+. .| .+|
T Consensus 78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D 157 (277)
T 3giw_A 78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLD 157 (277)
T ss_dssp CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCC
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccC
Confidence 567999999997 3444444556899999999995 49998872 24799999999652 01 255
Q ss_pred -----EEEEcchhccCCchH-HHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCH
Q 018205 255 -----AFFFKAIFHAFVDED-CLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTE 328 (359)
Q Consensus 255 -----~i~~~~vl~~~~~~~-~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~ 328 (359)
.|+++.+||++++++ ...++++++++|+| ||.|++.+...+.... ....+.+...........||.
T Consensus 158 ~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~P---GG~Lvls~~~~d~~p~-----~~~~~~~~~~~~g~p~~~rs~ 229 (277)
T 3giw_A 158 LTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPS---GSYLAMSIGTAEFAPQ-----EVGRVAREYAARNMPMRLRTH 229 (277)
T ss_dssp TTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCT---TCEEEEEEECCTTSHH-----HHHHHHHHHHHTTCCCCCCCH
T ss_pred cCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCC---CcEEEEEeccCCCCHH-----HHHHHHHHHHhcCCCCccCCH
Confidence 688999999999875 47899999999999 8999888876543211 111111111111123456899
Q ss_pred HHHHHHHHHcCCceeE
Q 018205 329 KEWEKLFLDAGFSHFK 344 (359)
Q Consensus 329 ~~~~~ll~~aGf~~~~ 344 (359)
+++.++|. ||..++
T Consensus 230 ~ei~~~f~--Glelve 243 (277)
T 3giw_A 230 AEAEEFFE--GLELVE 243 (277)
T ss_dssp HHHHHTTT--TSEECT
T ss_pred HHHHHHhC--CCcccC
Confidence 99999994 998543
No 95
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=99.42 E-value=3.1e-12 Score=111.22 Aligned_cols=140 Identities=11% Similarity=0.182 Sum_probs=98.3
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccC----CCCCCceEeeCCCCC-----CC-CCccEEEEcc
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKV----PDTDNLKFIAGDMFQ-----SI-PPADAFFFKA 260 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a----~~~~~v~~~~~d~~~-----~~-p~~D~i~~~~ 260 (359)
+.+..+|||+|||+|.++..+++..+..+++++|++. +++.+ +...++.++.+|+.+ ++ ..||+|+
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~--- 148 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIY--- 148 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEE---
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEE---
Confidence 4567899999999999999999998877999999954 76543 345789999999854 12 2499998
Q ss_pred hhccCCch-HHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcC
Q 018205 261 IFHAFVDE-DCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAG 339 (359)
Q Consensus 261 vl~~~~~~-~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aG 339 (359)
|+++++ ....+++++.++|+| ||.+++. .......... .. . ....+++. +|+++|
T Consensus 149 --~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~-~~~~~~~~~~---~~----~----------~~~~~~l~-~l~~~G 204 (230)
T 1fbn_A 149 --EDVAQPNQAEILIKNAKWFLKK---GGYGMIA-IKARSIDVTK---DP----K----------EIFKEQKE-ILEAGG 204 (230)
T ss_dssp --ECCCSTTHHHHHHHHHHHHEEE---EEEEEEE-EEGGGTCSSS---CH----H----------HHHHHHHH-HHHHHT
T ss_pred --EecCChhHHHHHHHHHHHhCCC---CcEEEEE-EecCCCCCCC---CH----H----------HhhHHHHH-HHHHCC
Confidence 444433 335679999999999 8888886 2211111000 00 0 01236777 899999
Q ss_pred CceeEEEEeCCc---eeEEEEe
Q 018205 340 FSHFKITPVYGI---KSLIEVY 358 (359)
Q Consensus 340 f~~~~~~~~~~~---~~vi~~~ 358 (359)
|+.+++.....+ +.++.++
T Consensus 205 f~~~~~~~~~~~~~~~~~v~~~ 226 (230)
T 1fbn_A 205 FKIVDEVDIEPFEKDHVMFVGI 226 (230)
T ss_dssp EEEEEEEECTTTSTTEEEEEEE
T ss_pred CEEEEEEccCCCccceEEEEEE
Confidence 999999887554 5555543
No 96
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=99.41 E-value=6.9e-13 Score=112.76 Aligned_cols=131 Identities=8% Similarity=0.075 Sum_probs=98.8
Q ss_pred eEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----CCCceEeeCCCCC-CCC--CccEEEEcchhccCCc
Q 018205 197 SLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----TDNLKFIAGDMFQ-SIP--PADAFFFKAIFHAFVD 267 (359)
Q Consensus 197 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----~~~v~~~~~d~~~-~~p--~~D~i~~~~vl~~~~~ 267 (359)
+|||||||+|.++..+++. +.+++++|++. +++.|++ ..++++..+|+.+ +++ .||+|++. +.+++.
T Consensus 32 ~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~--~~~~~~ 107 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSI--FCHLPS 107 (202)
T ss_dssp EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEE--CCCCCH
T ss_pred CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEE--hhcCCH
Confidence 9999999999999999887 66999999954 8877763 2379999999965 444 49999985 345566
Q ss_pred hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCceeEEEE
Q 018205 268 EDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITP 347 (359)
Q Consensus 268 ~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~~~~ 347 (359)
++...+|++++++|+| ||.+++.+........ ..... ......++.+++.++|+ ||+++++..
T Consensus 108 ~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~---------~~~~~---~~~~~~~~~~~l~~~l~--Gf~v~~~~~ 170 (202)
T 2kw5_A 108 SLRQQLYPKVYQGLKP---GGVFILEGFAPEQLQY---------NTGGP---KDLDLLPKLETLQSELP--SLNWLIANN 170 (202)
T ss_dssp HHHHHHHHHHHTTCCS---SEEEEEEEECTTTGGG---------TSCCS---SSGGGCCCHHHHHHHCS--SSCEEEEEE
T ss_pred HHHHHHHHHHHHhcCC---CcEEEEEEeccccccC---------CCCCC---CcceeecCHHHHHHHhc--CceEEEEEE
Confidence 6778899999999999 8998888766433210 00000 01124679999999998 999988765
Q ss_pred e
Q 018205 348 V 348 (359)
Q Consensus 348 ~ 348 (359)
.
T Consensus 171 ~ 171 (202)
T 2kw5_A 171 L 171 (202)
T ss_dssp E
T ss_pred E
Confidence 5
No 97
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=99.41 E-value=1.7e-12 Score=116.13 Aligned_cols=134 Identities=16% Similarity=0.196 Sum_probs=103.0
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCCCCC--CccEEEEc----
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQSIP--PADAFFFK---- 259 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~~~p--~~D~i~~~---- 259 (359)
.+..+|||+|||+|..+..+++.+|+.+++++|++. +++.|+. ..+++++.+|+++..+ .||+|+++
T Consensus 108 ~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~fD~Iv~npPy~ 187 (276)
T 2b3t_A 108 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYI 187 (276)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCCB
T ss_pred cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCCccEEEECCCCC
Confidence 346799999999999999999999999999999955 8877662 2479999999976542 49999997
Q ss_pred ---------chhccCCc----------hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhh
Q 018205 260 ---------AIFHAFVD----------EDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVA 320 (359)
Q Consensus 260 ---------~vl~~~~~----------~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (359)
.++++.+. +....+++++.++|+| ||.+++...
T Consensus 188 ~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~Lkp---gG~l~~~~~------------------------- 239 (276)
T 2b3t_A 188 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVS---GGFLLLEHG------------------------- 239 (276)
T ss_dssp CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEE---EEEEEEECC-------------------------
T ss_pred CccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCC---CCEEEEEEC-------------------------
Confidence 34444331 3457799999999999 787776310
Q ss_pred cCCcccCHHHHHHHHHHcCCceeEEEEe-CCceeEEEEe
Q 018205 321 VRGSERTEKEWEKLFLDAGFSHFKITPV-YGIKSLIEVY 358 (359)
Q Consensus 321 ~~g~~~t~~~~~~ll~~aGf~~~~~~~~-~~~~~vi~~~ 358 (359)
..+.+++.++++++||+.+++... .+...++.++
T Consensus 240 ----~~~~~~~~~~l~~~Gf~~v~~~~d~~g~~r~~~~~ 274 (276)
T 2b3t_A 240 ----WQQGEAVRQAFILAGYHDVETCRDYGDNERVTLGR 274 (276)
T ss_dssp ----SSCHHHHHHHHHHTTCTTCCEEECTTSSEEEEEEE
T ss_pred ----chHHHHHHHHHHHCCCcEEEEEecCCCCCcEEEEE
Confidence 114577889999999998777654 6667777665
No 98
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*
Probab=99.41 E-value=5.6e-13 Score=115.46 Aligned_cols=145 Identities=11% Similarity=0.065 Sum_probs=92.5
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-c-ccccC---CC------CCCceEeeCCCCCCCCC--ccEEEEc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-H-VVPKV---PD------TDNLKFIAGDMFQSIPP--ADAFFFK 259 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~-~~~~a---~~------~~~v~~~~~d~~~~~p~--~D~i~~~ 259 (359)
.+..+|||||||+|.++..++++.|+.+++|+|++ + |++.| ++ ..++.++.+|+.+ +|. +|.|.+.
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~-l~~~~~d~v~~i 101 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAES-LPFELKNIADSI 101 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTB-CCGGGTTCEEEE
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHH-hhhhccCeEEEE
Confidence 45679999999999999999998999999999996 5 54444 42 3579999999944 342 4666555
Q ss_pred chhccCCch------HHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHH
Q 018205 260 AIFHAFVDE------DCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEK 333 (359)
Q Consensus 260 ~vl~~~~~~------~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ 333 (359)
.+.+.|+.. +...+|++++++|+| ||.+++........... .. ....... ........+++.+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~r~Lkp---GG~l~i~~~~~~~~~~~----~~-~~~~~~~---~~~~~~~~~el~~ 170 (225)
T 3p2e_A 102 SILFPWGTLLEYVIKPNRDILSNVADLAKK---EAHFEFVTTYSDSYEEA----EI-KKRGLPL---LSKAYFLSEQYKA 170 (225)
T ss_dssp EEESCCHHHHHHHHTTCHHHHHHHHTTEEE---EEEEEEEECCCC----------------------CCHHHHHSHHHHH
T ss_pred EEeCCCcHHhhhhhcchHHHHHHHHHhcCC---CcEEEEEEeccccchhc----hh-hhcCCCC---CChhhcchHHHHH
Confidence 544333321 113589999999999 89888844333221100 00 0000000 0001112235999
Q ss_pred HHHHcCCceeEEEEeC
Q 018205 334 LFLDAGFSHFKITPVY 349 (359)
Q Consensus 334 ll~~aGf~~~~~~~~~ 349 (359)
+++++||.+..+....
T Consensus 171 ~l~~aGf~v~~~~~~~ 186 (225)
T 3p2e_A 171 ELSNSGFRIDDVKELD 186 (225)
T ss_dssp HHHHHTCEEEEEEEEC
T ss_pred HHHHcCCCeeeeeecC
Confidence 9999999998887664
No 99
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=99.40 E-value=4.9e-13 Score=114.92 Aligned_cols=100 Identities=13% Similarity=0.211 Sum_probs=82.3
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC----CCCCceEeeCCCCCCCC--CccEEEEcchhcc
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP----DTDNLKFIAGDMFQSIP--PADAFFFKAIFHA 264 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~----~~~~v~~~~~d~~~~~p--~~D~i~~~~vl~~ 264 (359)
..+..+|||||||+|.++..+++.. .+++++|++. +++.++ ...+++++.+|+.+..+ .||+|++++++|+
T Consensus 49 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~ 126 (216)
T 3ofk_A 49 SGAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVVAEVLYY 126 (216)
T ss_dssp TSSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEEESCGGG
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEEccHHHh
Confidence 3456899999999999999999884 5899999954 777665 34589999999966323 4999999999999
Q ss_pred CCc-hHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 265 FVD-EDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 265 ~~~-~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
+++ +...++|++++++|+| ||.+++....
T Consensus 127 ~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~ 156 (216)
T 3ofk_A 127 LEDMTQMRTAIDNMVKMLAP---GGHLVFGSAR 156 (216)
T ss_dssp SSSHHHHHHHHHHHHHTEEE---EEEEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHcCC---CCEEEEEecC
Confidence 986 4556899999999999 8888886653
No 100
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=99.39 E-value=7.6e-13 Score=131.00 Aligned_cols=101 Identities=11% Similarity=0.156 Sum_probs=84.5
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeeccc-ccccCCC------------CCCceEeeCCCCC-CCC--CccE
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDLPH-VVPKVPD------------TDNLKFIAGDMFQ-SIP--PADA 255 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~-~~~~a~~------------~~~v~~~~~d~~~-~~p--~~D~ 255 (359)
.+..+|||||||+|.++..+++.. |..+++++|++. +++.|++ ..+++++.+|+.+ +.+ .||+
T Consensus 720 ~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDl 799 (950)
T 3htx_A 720 SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDI 799 (950)
T ss_dssp SCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCE
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeE
Confidence 467899999999999999999987 567999999965 8877743 3579999999965 333 4999
Q ss_pred EEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 018205 256 FFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVI 297 (359)
Q Consensus 256 i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~ 297 (359)
|++..++||++++....++++++++|+| | .++|..+..
T Consensus 800 VV~~eVLeHL~dp~l~~~L~eI~RvLKP---G-~LIISTPN~ 837 (950)
T 3htx_A 800 GTCLEVIEHMEEDQACEFGEKVLSLFHP---K-LLIVSTPNY 837 (950)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHTTCC---S-EEEEEECBG
T ss_pred EEEeCchhhCChHHHHHHHHHHHHHcCC---C-EEEEEecCc
Confidence 9999999999998888899999999999 6 666666543
No 101
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=99.37 E-value=1.8e-12 Score=117.20 Aligned_cols=151 Identities=11% Similarity=0.069 Sum_probs=98.5
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----CC-------CceEeeCCCCC---------CCC
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----TD-------NLKFIAGDMFQ---------SIP 251 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----~~-------~v~~~~~d~~~---------~~p 251 (359)
+..+|||||||+|..+..++... ..+++|+|+++ +++.|++ .. ++++.+.|+.. .++
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~-~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGE-IALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCeEEEEecCCcHhHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 46899999999998777666543 46899999965 9988873 11 25677777721 123
Q ss_pred --CccEEEEcchhccC-CchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcc----------h-HHHH-HHHh----
Q 018205 252 --PADAFFFKAIFHAF-VDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKED----------A-QLTE-AKLL---- 312 (359)
Q Consensus 252 --~~D~i~~~~vl~~~-~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~----------~-~~~~-~~~~---- 312 (359)
.||+|+|..++|+. ..++..++|++++++|+| ||.+++..+....-... . .+.. ....
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~Lkp---GG~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 203 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTAS---GGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKIA 203 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEE---EEEEEEEEECHHHHTTCCSCEEEECCSSSCTTTSEEEECEEE
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCC---CCEEEEEeCCHHHHHHHHhcCCcccccccccccceeeecccc
Confidence 49999999999984 444567899999999999 89988876642210000 0 0000 0000
Q ss_pred hhhhh-hhhcC------CcccCHHHHHHHHHHcCCceeEEEEe
Q 018205 313 YDMLM-MVAVR------GSERTEKEWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 313 ~~~~~-~~~~~------g~~~t~~~~~~ll~~aGf~~~~~~~~ 348 (359)
.+... ....+ -...+.+++.++++++||+++.....
T Consensus 204 ~~~~~~~~~~~~~~~~~e~~v~~~el~~l~~~~Gl~lv~~~~f 246 (302)
T 2vdw_A 204 DDRIVVYNPSTMSTPMTEYIIKKNDIVRVFNEYGFVLVDNVDF 246 (302)
T ss_dssp TTEEEEBCTTTBSSCEEEECCCHHHHHHHHHHTTEEEEEEEEH
T ss_pred ccccceeeccccCCCceeeeeEHHHHHHHHHHCCCEEEEecCh
Confidence 00000 00001 12567899999999999999888654
No 102
>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*
Probab=99.37 E-value=4e-13 Score=119.42 Aligned_cols=96 Identities=20% Similarity=0.297 Sum_probs=79.2
Q ss_pred CCCeEEEeCCCcch----HHHHHHHHCC----CCeEEEeeccc-ccccCCCC----------------------------
Q 018205 194 GLGSLVDVGGGTGS----FARIISEAFP----GIKCTVLDLPH-VVPKVPDT---------------------------- 236 (359)
Q Consensus 194 ~~~~vlDvG~G~G~----~~~~l~~~~p----~~~~~~~D~~~-~~~~a~~~---------------------------- 236 (359)
+..+|+|+|||+|. +++.|++..| +.+++++|++. +++.|++.
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 35799999999998 6666777654 46899999965 88876521
Q ss_pred ---------CCceEeeCCCCC-CCC---CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEE
Q 018205 237 ---------DNLKFIAGDMFQ-SIP---PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 237 ---------~~v~~~~~d~~~-~~p---~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli 292 (359)
.+|.|.++|+.+ +++ .||+|+|.+++++++++...+++++++++|+| ||.+++
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~p---gG~L~l 250 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKP---DGLLFA 250 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEE---EEEEEE
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCC---CcEEEE
Confidence 268999999977 354 49999999999999988888999999999999 787776
No 103
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=99.35 E-value=6.5e-12 Score=107.58 Aligned_cols=136 Identities=14% Similarity=0.150 Sum_probs=92.8
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-cc----ccCCCCCCceEeeCCCCCC-----CC-CccEEEEcc
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VV----PKVPDTDNLKFIAGDMFQS-----IP-PADAFFFKA 260 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~----~~a~~~~~v~~~~~d~~~~-----~p-~~D~i~~~~ 260 (359)
..+..+|||+|||+|.++..+++..++.+++++|+++ ++ +.|+...++.++.+|+... ++ .||+|++.
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~- 133 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQD- 133 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEEC-
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEe-
Confidence 4567899999999999999999998767999999964 43 4444456789999988542 22 49999986
Q ss_pred hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHH----HHHHH
Q 018205 261 IFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEW----EKLFL 336 (359)
Q Consensus 261 vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~----~~ll~ 336 (359)
+.+ .++...++++++++|+| ||.+++.-.... .+. ..+.+++ .+.++
T Consensus 134 ~~~---~~~~~~~l~~~~r~Lkp---gG~l~i~~~~~~--------------~~~---------~~~~~~~~~~~~~~l~ 184 (210)
T 1nt2_A 134 IAQ---KNQIEILKANAEFFLKE---KGEVVIMVKARS--------------IDS---------TAEPEEVFKSVLKEME 184 (210)
T ss_dssp CCS---TTHHHHHHHHHHHHEEE---EEEEEEEEEHHH--------------HCT---------TSCHHHHHHHHHHHHH
T ss_pred ccC---hhHHHHHHHHHHHHhCC---CCEEEEEEecCC--------------ccc---------cCCHHHHHHHHHHHHH
Confidence 222 23344569999999999 898888732210 000 0122222 12378
Q ss_pred HcCCceeEEEEeCC---ceeEEEEe
Q 018205 337 DAGFSHFKITPVYG---IKSLIEVY 358 (359)
Q Consensus 337 ~aGf~~~~~~~~~~---~~~vi~~~ 358 (359)
++ |++.+...... .+.++.++
T Consensus 185 ~~-f~~~~~~~~~p~~~~h~~~~~~ 208 (210)
T 1nt2_A 185 GD-FKIVKHGSLMPYHRDHIFIHAY 208 (210)
T ss_dssp TT-SEEEEEEECTTTCTTEEEEEEE
T ss_pred hh-cEEeeeecCCCCCCCcEEEEEE
Confidence 88 99999988732 44566654
No 104
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=99.35 E-value=8.1e-12 Score=104.91 Aligned_cols=140 Identities=14% Similarity=0.291 Sum_probs=101.8
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC------CC--CceEeeCCCCCCCC-
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD------TD--NLKFIAGDMFQSIP- 251 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~------~~--~v~~~~~d~~~~~p- 251 (359)
..+++.+. ..+..+|||+|||+|.++..+++. +.+++++|++ .+++.++. .. +++++.+|+.+..+
T Consensus 42 ~~l~~~~~--~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~ 117 (194)
T 1dus_A 42 KILVENVV--VDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKD 117 (194)
T ss_dssp HHHHHHCC--CCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTT
T ss_pred HHHHHHcc--cCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhccccc
Confidence 35566665 456789999999999999999988 7799999995 47776652 23 49999999976543
Q ss_pred -CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHH
Q 018205 252 -PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKE 330 (359)
Q Consensus 252 -~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~ 330 (359)
.||+|++...+|+ ..+....+++++.++|+| ||.+++....... ..+
T Consensus 118 ~~~D~v~~~~~~~~-~~~~~~~~l~~~~~~L~~---gG~l~~~~~~~~~----------------------------~~~ 165 (194)
T 1dus_A 118 RKYNKIITNPPIRA-GKEVLHRIIEEGKELLKD---NGEIWVVIQTKQG----------------------------AKS 165 (194)
T ss_dssp SCEEEEEECCCSTT-CHHHHHHHHHHHHHHEEE---EEEEEEEEESTHH----------------------------HHH
T ss_pred CCceEEEECCCccc-chhHHHHHHHHHHHHcCC---CCEEEEEECCCCC----------------------------hHH
Confidence 4999999888774 345567899999999999 8888887643211 123
Q ss_pred HHHHHHHcCCceeEEEEeCCceeEEEEe
Q 018205 331 WEKLFLDAGFSHFKITPVYGIKSLIEVY 358 (359)
Q Consensus 331 ~~~ll~~aGf~~~~~~~~~~~~~vi~~~ 358 (359)
+.+.+++. |..+++......+.++.++
T Consensus 166 ~~~~l~~~-~~~~~~~~~~~~~~~~~~~ 192 (194)
T 1dus_A 166 LAKYMKDV-FGNVETVTIKGGYRVLKSK 192 (194)
T ss_dssp HHHHHHHH-HSCCEEEEEETTEEEEEEE
T ss_pred HHHHHHHH-hcceEEEecCCcEEEEEEe
Confidence 55666666 6566666665555555554
No 105
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=99.35 E-value=1.1e-12 Score=115.50 Aligned_cols=107 Identities=12% Similarity=0.082 Sum_probs=81.3
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC---CCCceEeeCCCCC----C-CCC
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD---TDNLKFIAGDMFQ----S-IPP 252 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~---~~~v~~~~~d~~~----~-~p~ 252 (359)
..+++.++ ..+..+|||||||+|.++..++++ +.+++++|+++ |++.|++ ...+.....++.. . ...
T Consensus 35 ~~il~~l~--l~~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~ 110 (261)
T 3iv6_A 35 ENDIFLEN--IVPGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGH 110 (261)
T ss_dssp HHHHHTTT--CCTTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTC
T ss_pred HHHHHhcC--CCCcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCC
Confidence 45666666 667789999999999999999987 56899999965 8887763 1112222222211 1 125
Q ss_pred ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 253 ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 253 ~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
||+|+++.++|++..++...+++++.++| | ||.+++....
T Consensus 111 fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-P---GG~l~lS~~~ 150 (261)
T 3iv6_A 111 FDFVLNDRLINRFTTEEARRACLGMLSLV-G---SGTVRASVKL 150 (261)
T ss_dssp CSEEEEESCGGGSCHHHHHHHHHHHHHHH-T---TSEEEEEEEB
T ss_pred ccEEEEhhhhHhCCHHHHHHHHHHHHHhC-c---CcEEEEEecc
Confidence 99999999999999888889999999999 9 8988886543
No 106
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*
Probab=99.34 E-value=1e-12 Score=121.28 Aligned_cols=112 Identities=11% Similarity=0.125 Sum_probs=89.5
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC---------------CCCceEeeCC
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD---------------TDNLKFIAGD 245 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~---------------~~~v~~~~~d 245 (359)
..+++.+. +.+..+|||||||+|..+..++...+..+++|+|+++ +++.|+. ..+|+++++|
T Consensus 163 ~~il~~l~--l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD 240 (438)
T 3uwp_A 163 AQMIDEIK--MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD 240 (438)
T ss_dssp HHHHHHHC--CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECC
T ss_pred HHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECc
Confidence 45666666 6778999999999999999999888766799999964 6665542 3689999999
Q ss_pred CCC-CC----CCccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCC
Q 018205 246 MFQ-SI----PPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKK 301 (359)
Q Consensus 246 ~~~-~~----p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~ 301 (359)
+++ ++ ..||+|+++++++ . ++..+.|+++++.|+| ||+|++.+...+...
T Consensus 241 ~~~lp~~d~~~~aDVVf~Nn~~F-~--pdl~~aL~Ei~RvLKP---GGrIVssE~f~p~d~ 295 (438)
T 3uwp_A 241 FLSEEWRERIANTSVIFVNNFAF-G--PEVDHQLKERFANMKE---GGRIVSSKPFAPLNF 295 (438)
T ss_dssp TTSHHHHHHHHTCSEEEECCTTC-C--HHHHHHHHHHHTTSCT---TCEEEESSCSSCTTC
T ss_pred ccCCccccccCCccEEEEccccc-C--chHHHHHHHHHHcCCC---CcEEEEeecccCCCC
Confidence 976 33 3599999987763 3 4556788999999999 999999988876543
No 107
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=99.34 E-value=1.8e-12 Score=107.68 Aligned_cols=101 Identities=15% Similarity=0.269 Sum_probs=80.3
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCCCC----
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQSI---- 250 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~~~---- 250 (359)
.+++.+. ..+..+|||+|||+|.++..+++.+|+.+++++|++. +++.|++ .+++ ++.+|..+.+
T Consensus 16 ~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~ 92 (178)
T 3hm2_A 16 LAISALA--PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVP 92 (178)
T ss_dssp HHHHHHC--CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCC
T ss_pred HHHHHhc--ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccC
Confidence 4455555 4567899999999999999999999999999999955 8877662 2377 8888885532
Q ss_pred CCccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 018205 251 PPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDI 295 (359)
Q Consensus 251 p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~ 295 (359)
..||+|++...+++ ..+++++.++|+| ||.+++.+.
T Consensus 93 ~~~D~i~~~~~~~~------~~~l~~~~~~L~~---gG~l~~~~~ 128 (178)
T 3hm2_A 93 DNPDVIFIGGGLTA------PGVFAAAWKRLPV---GGRLVANAV 128 (178)
T ss_dssp SCCSEEEECC-TTC------TTHHHHHHHTCCT---TCEEEEEEC
T ss_pred CCCCEEEECCcccH------HHHHHHHHHhcCC---CCEEEEEee
Confidence 35999999999987 3489999999999 899888653
No 108
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=99.33 E-value=6.7e-13 Score=113.62 Aligned_cols=143 Identities=17% Similarity=0.208 Sum_probs=90.7
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCCC-----CCceEeeCCCCCCC------
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPDT-----DNLKFIAGDMFQSI------ 250 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~-----~~v~~~~~d~~~~~------ 250 (359)
.+++.+. ...+..+|||+|||+|.++..+++.+|+.+++++|++ .+++.|+.. .+++++++|+.+.+
T Consensus 20 ~~~~~l~-~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 98 (215)
T 4dzr_A 20 EAIRFLK-RMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAER 98 (215)
T ss_dssp HHHHHHT-TCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHHHHHHHHHT
T ss_pred HHHHHhh-hcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhc
Confidence 4444444 1256789999999999999999999999999999995 488888741 16888989886532
Q ss_pred -CCccEEEEcchhc------cCCchHH------------------HHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchH
Q 018205 251 -PPADAFFFKAIFH------AFVDEDC------------------LKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQ 305 (359)
Q Consensus 251 -p~~D~i~~~~vl~------~~~~~~~------------------~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~ 305 (359)
..||+|+++..++ +++++.. ..++++++++|+| ||.+++++...
T Consensus 99 ~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~-------- 167 (215)
T 4dzr_A 99 GRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLAR---GRAGVFLEVGH-------- 167 (215)
T ss_dssp TCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCS---SSEEEEEECTT--------
T ss_pred cCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcC---CCeEEEEEECC--------
Confidence 3599999964433 2222211 6789999999999 89856654321
Q ss_pred HHHHHHhhhhhhhhhcCCcccCHHHHHHHHH--HcCCceeEEEEe-CCceeEEEE
Q 018205 306 LTEAKLLYDMLMMVAVRGSERTEKEWEKLFL--DAGFSHFKITPV-YGIKSLIEV 357 (359)
Q Consensus 306 ~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~--~aGf~~~~~~~~-~~~~~vi~~ 357 (359)
...+++.++++ ++||..+++... .+...++.+
T Consensus 168 --------------------~~~~~~~~~l~~~~~gf~~~~~~~~~~~~~r~~~~ 202 (215)
T 4dzr_A 168 --------------------NQADEVARLFAPWRERGFRVRKVKDLRGIDRVIAV 202 (215)
T ss_dssp --------------------SCHHHHHHHTGGGGGGTEECCEEECTTSCEEEEEE
T ss_pred --------------------ccHHHHHHHHHHhhcCCceEEEEEecCCCEEEEEE
Confidence 13456777888 889988777766 334445444
No 109
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=99.33 E-value=3e-12 Score=109.54 Aligned_cols=102 Identities=15% Similarity=0.218 Sum_probs=82.8
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC----CCCceEeeCCCCC-CCC--CccEEEEcchhc
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD----TDNLKFIAGDMFQ-SIP--PADAFFFKAIFH 263 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~----~~~v~~~~~d~~~-~~p--~~D~i~~~~vl~ 263 (359)
+.+..+|||+|||+|.++..+++..+. +++++|++. +++.+++ ..++++..+|+.+ +++ .||+|++..+++
T Consensus 40 ~~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~ 118 (215)
T 2pxx_A 40 LRPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLD 118 (215)
T ss_dssp CCTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHH
T ss_pred cCCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchh
Confidence 356789999999999999999998654 899999954 7776652 3689999999965 444 499999999987
Q ss_pred cCC-------------chHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 018205 264 AFV-------------DEDCLKILKRCREAIASRGDRGKVIIIDIVI 297 (359)
Q Consensus 264 ~~~-------------~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~ 297 (359)
++. .++..++|+++.++|+| ||.+++.++..
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~~~~ 162 (215)
T 2pxx_A 119 ALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVP---GGRFISMTSAA 162 (215)
T ss_dssp HHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEE---EEEEEEEESCC
T ss_pred hhccccccccccccchhHHHHHHHHHHHHhCcC---CCEEEEEeCCC
Confidence 764 34567899999999999 89999877543
No 110
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41
Probab=99.32 E-value=5.1e-13 Score=118.34 Aligned_cols=148 Identities=14% Similarity=0.205 Sum_probs=96.7
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCCCCCceEeeCCCCC-CCC--CccEEEEcchhccCCchH
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPDTDNLKFIAGDMFQ-SIP--PADAFFFKAIFHAFVDED 269 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~~v~~~~~d~~~-~~p--~~D~i~~~~vl~~~~~~~ 269 (359)
+..+|||||||+|.++..+++. +.+++++|++. +++.+++...-.++.+|+.+ +++ .||+|++..+++++.++
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~- 130 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN- 130 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC-
T ss_pred CCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhcccc-
Confidence 5689999999999999999987 67899999954 88777632112388889855 443 49999998866665332
Q ss_pred HHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcc----hHHHHHHHhhhhhhhhhc------CCcccCHHHHHHHHHHcC
Q 018205 270 CLKILKRCREAIASRGDRGKVIIIDIVINEKKED----AQLTEAKLLYDMLMMVAV------RGSERTEKEWEKLFLDAG 339 (359)
Q Consensus 270 ~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~------~g~~~t~~~~~~ll~~aG 339 (359)
...+|++++++|+| ||.+++........... ..+............... ....++.+++.++ +|
T Consensus 131 ~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l---aG 204 (260)
T 2avn_A 131 KDKAFSEIRRVLVP---DGLLIATVDNFYTFLQQMIEKDAWDQITRFLKTQTTSVGTTLFSFNSYAFKPEDLDSL---EG 204 (260)
T ss_dssp HHHHHHHHHHHEEE---EEEEEEEEEBHHHHHHHHHHTTCHHHHHHHHHHCEEEEECSSEEEEEECBCGGGGSSC---TT
T ss_pred HHHHHHHHHHHcCC---CeEEEEEeCChHHHHHHhhcchhHHHHHHHHhccccccCCCceeEEEeccCHHHHHHh---cC
Confidence 56799999999999 89888876553210000 000000000000000000 0025688888877 99
Q ss_pred CceeEEEEeCC
Q 018205 340 FSHFKITPVYG 350 (359)
Q Consensus 340 f~~~~~~~~~~ 350 (359)
|+++++.....
T Consensus 205 f~~~~~~~~~~ 215 (260)
T 2avn_A 205 FETVDIRGIGV 215 (260)
T ss_dssp EEEEEEEEECS
T ss_pred ceEEEEECCCC
Confidence 99999887643
No 111
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=99.31 E-value=6.8e-12 Score=110.75 Aligned_cols=125 Identities=19% Similarity=0.273 Sum_probs=97.0
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC-----CCCceEeeCCCCCCCC--CccEEEEcchhcc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD-----TDNLKFIAGDMFQSIP--PADAFFFKAIFHA 264 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~-----~~~v~~~~~d~~~~~p--~~D~i~~~~vl~~ 264 (359)
.+..+|||+|||+|.++..+++..+ +++++|++ .+++.|++ ...+++..+|+.+.++ .||+|+++...+
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~~~~fD~Vv~n~~~~- 195 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAE- 195 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHH-
T ss_pred CCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCcCCCCCEEEECCcHH-
Confidence 4578999999999999999988754 99999994 48877662 1128999999855332 499999876554
Q ss_pred CCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCceeE
Q 018205 265 FVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFK 344 (359)
Q Consensus 265 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~ 344 (359)
....+++++.++|+| ||.+++...... +.+++.++++++||++++
T Consensus 196 ----~~~~~l~~~~~~Lkp---gG~lils~~~~~----------------------------~~~~v~~~l~~~Gf~~~~ 240 (254)
T 2nxc_A 196 ----LHAALAPRYREALVP---GGRALLTGILKD----------------------------RAPLVREAMAGAGFRPLE 240 (254)
T ss_dssp ----HHHHHHHHHHHHEEE---EEEEEEEEEEGG----------------------------GHHHHHHHHHHTTCEEEE
T ss_pred ----HHHHHHHHHHHHcCC---CCEEEEEeeccC----------------------------CHHHHHHHHHHCCCEEEE
Confidence 246799999999999 888888654321 356788999999999999
Q ss_pred EEEeCCceeEE
Q 018205 345 ITPVYGIKSLI 355 (359)
Q Consensus 345 ~~~~~~~~~vi 355 (359)
+.....+..++
T Consensus 241 ~~~~~~W~~l~ 251 (254)
T 2nxc_A 241 EAAEGEWVLLA 251 (254)
T ss_dssp EEEETTEEEEE
T ss_pred EeccCCeEEEE
Confidence 98887766554
No 112
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=99.29 E-value=1.8e-11 Score=105.59 Aligned_cols=141 Identities=14% Similarity=0.141 Sum_probs=97.1
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHH-CCCCeEEEeecc-cccccCC----CCCCceEeeCCCCCC--CC----CccEEEEc
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEA-FPGIKCTVLDLP-HVVPKVP----DTDNLKFIAGDMFQS--IP----PADAFFFK 259 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~~-~~~~~a~----~~~~v~~~~~d~~~~--~p----~~D~i~~~ 259 (359)
+.++.+|||+|||+|.++..+++. .|+-+++++|++ .+++.++ +..++..+.+|...+ .+ .+|+|++.
T Consensus 75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d 154 (233)
T 4df3_A 75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYAD 154 (233)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEEe
Confidence 678899999999999999999987 488899999995 4776544 467899999988542 11 38988763
Q ss_pred chhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcC
Q 018205 260 AIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAG 339 (359)
Q Consensus 260 ~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aG 339 (359)
+++. ++...+++++++.||| ||+++|......... .. ..-. ..++-.+.|+++|
T Consensus 155 --~~~~--~~~~~~l~~~~r~LKp---GG~lvI~ik~r~~d~-------~~----------p~~~--~~~~ev~~L~~~G 208 (233)
T 4df3_A 155 --VAQP--EQAAIVVRNARFFLRD---GGYMLMAIKARSIDV-------TT----------EPSE--VYKREIKTLMDGG 208 (233)
T ss_dssp --CCCT--THHHHHHHHHHHHEEE---EEEEEEEEECCHHHH-------HT----------CCCH--HHHHHHHHHHHTT
T ss_pred --ccCC--hhHHHHHHHHHHhccC---CCEEEEEEecccCCC-------CC----------ChHH--HHHHHHHHHHHCC
Confidence 3222 2345699999999999 899888653221110 00 0000 1133456779999
Q ss_pred CceeEEEEeCCc---eeEEEEe
Q 018205 340 FSHFKITPVYGI---KSLIEVY 358 (359)
Q Consensus 340 f~~~~~~~~~~~---~~vi~~~ 358 (359)
|++.+...+..+ +.++.++
T Consensus 209 F~l~e~i~L~pf~~~H~lv~~~ 230 (233)
T 4df3_A 209 LEIKDVVHLDPFDRDHAMIYAV 230 (233)
T ss_dssp CCEEEEEECTTTSTTEEEEEEC
T ss_pred CEEEEEEccCCCCCceEEEEEE
Confidence 999999887442 5555543
No 113
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=99.29 E-value=8.9e-12 Score=108.44 Aligned_cols=133 Identities=12% Similarity=0.135 Sum_probs=91.3
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeeccc-----ccccCCCCCCceEeeCCCCCC--C----CCccEEEEc
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDLPH-----VVPKVPDTDNLKFIAGDMFQS--I----PPADAFFFK 259 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~-----~~~~a~~~~~v~~~~~d~~~~--~----p~~D~i~~~ 259 (359)
+.+..+|||+|||+|.++..+++.. |+.+++++|++. +++.|+...+++++.+|+.+. . ..||+|++.
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~ 154 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFAD 154 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEc
Confidence 4567899999999999999999986 678999999963 344444457899999999652 2 249999985
Q ss_pred chhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcC
Q 018205 260 AIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAG 339 (359)
Q Consensus 260 ~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aG 339 (359)
.. ..+....+++++.++|+| ||.+++ +.......... ... ..++ .+ .++|+++|
T Consensus 155 ~~----~~~~~~~~~~~~~~~Lkp---gG~l~i-~~~~~~~~~~~---------~~~-------~~~~-~~-~~~l~~~G 208 (233)
T 2ipx_A 155 VA----QPDQTRIVALNAHTFLRN---GGHFVI-SIKANCIDSTA---------SAE-------AVFA-SE-VKKMQQEN 208 (233)
T ss_dssp CC----CTTHHHHHHHHHHHHEEE---EEEEEE-EEEHHHHCSSS---------CHH-------HHHH-HH-HHTTGGGT
T ss_pred CC----CccHHHHHHHHHHHHcCC---CeEEEE-EEcccccccCC---------CHH-------HHHH-HH-HHHHHHCC
Confidence 44 223345579999999999 888877 33221000000 000 0011 23 58889999
Q ss_pred CceeEEEEeCC
Q 018205 340 FSHFKITPVYG 350 (359)
Q Consensus 340 f~~~~~~~~~~ 350 (359)
|+++++.....
T Consensus 209 f~~~~~~~~~~ 219 (233)
T 2ipx_A 209 MKPQEQLTLEP 219 (233)
T ss_dssp EEEEEEEECTT
T ss_pred CceEEEEecCC
Confidence 99999777643
No 114
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=99.29 E-value=4.6e-13 Score=118.18 Aligned_cols=144 Identities=13% Similarity=0.124 Sum_probs=93.4
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCC----CCCC-----CccEE
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMF----QSIP-----PADAF 256 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~----~~~p-----~~D~i 256 (359)
+..+|||+|||+|.++..++++.|+.+++++|++. +++.|++ .++++++.+|+. ++++ .||+|
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 56799999999999999999988889999999954 8877762 346999999853 2333 49999
Q ss_pred EEcchhccCCc-------------hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCC
Q 018205 257 FFKAIFHAFVD-------------EDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRG 323 (359)
Q Consensus 257 ~~~~vl~~~~~-------------~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 323 (359)
+++-.++.... +....++.+++++|+| ||.+.+++..... .........+.....+
T Consensus 145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Lkp---gG~l~~~~~~~~~--------~~~~l~~~g~~~~~~~ 213 (254)
T 2h00_A 145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAE---GGELEFVKRIIHD--------SLQLKKRLRWYSCMLG 213 (254)
T ss_dssp EECCCCC-------------------------CTTTTHHH---HTHHHHHHHHHHH--------HHHHGGGBSCEEEEES
T ss_pred EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEec---CCEEEEEHHHHHH--------HHhcccceEEEEECCC
Confidence 99865554320 1123467889999999 8888776532211 0000000011111123
Q ss_pred cccCHHHHHHHHHHcCCceeEEEEe
Q 018205 324 SERTEKEWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 324 ~~~t~~~~~~ll~~aGf~~~~~~~~ 348 (359)
...+.+++.++|+++||+.+++...
T Consensus 214 ~~~~~~~~~~~l~~~Gf~~v~~~~~ 238 (254)
T 2h00_A 214 KKCSLAPLKEELRIQGVPKVTYTEF 238 (254)
T ss_dssp STTSHHHHHHHHHHTTCSEEEEEEE
T ss_pred ChhHHHHHHHHHHHcCCCceEEEEE
Confidence 3345688999999999998887766
No 115
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=99.29 E-value=2.1e-11 Score=103.84 Aligned_cols=123 Identities=17% Similarity=0.238 Sum_probs=92.8
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC-------CCCceEeeCCCCCC---CC
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD-------TDNLKFIAGDMFQS---IP 251 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~-------~~~v~~~~~d~~~~---~p 251 (359)
.++..+. ..+..+|||+|||+|.++..+++. +.+++++|++ .+++.|++ .++++++.+|+.+. .+
T Consensus 46 ~~l~~l~--~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~ 121 (204)
T 3njr_A 46 LTLAALA--PRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLP 121 (204)
T ss_dssp HHHHHHC--CCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSC
T ss_pred HHHHhcC--CCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCC
Confidence 3455555 566789999999999999999988 7799999995 48877662 23899999999662 34
Q ss_pred CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHH
Q 018205 252 PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEW 331 (359)
Q Consensus 252 ~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~ 331 (359)
.||+|++...+ +.. +++++.++|+| ||.+++...... +..++
T Consensus 122 ~~D~v~~~~~~------~~~-~l~~~~~~Lkp---gG~lv~~~~~~~----------------------------~~~~~ 163 (204)
T 3njr_A 122 LPEAVFIGGGG------SQA-LYDRLWEWLAP---GTRIVANAVTLE----------------------------SETLL 163 (204)
T ss_dssp CCSEEEECSCC------CHH-HHHHHHHHSCT---TCEEEEEECSHH----------------------------HHHHH
T ss_pred CCCEEEECCcc------cHH-HHHHHHHhcCC---CcEEEEEecCcc----------------------------cHHHH
Confidence 69999987644 123 99999999999 898887553210 23556
Q ss_pred HHHHHHcCCceeEEEE
Q 018205 332 EKLFLDAGFSHFKITP 347 (359)
Q Consensus 332 ~~ll~~aGf~~~~~~~ 347 (359)
.+++++.|+.+..+..
T Consensus 164 ~~~l~~~g~~i~~i~~ 179 (204)
T 3njr_A 164 TQLHARHGGQLLRIDI 179 (204)
T ss_dssp HHHHHHHCSEEEEEEE
T ss_pred HHHHHhCCCcEEEEEe
Confidence 6788888988766543
No 116
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=99.28 E-value=1.3e-12 Score=114.02 Aligned_cols=133 Identities=17% Similarity=0.143 Sum_probs=89.0
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCC-----CCCCceEeeCCCCC---CCC--CccEEEE---
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVP-----DTDNLKFIAGDMFQ---SIP--PADAFFF--- 258 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~-----~~~~v~~~~~d~~~---~~p--~~D~i~~--- 258 (359)
.+..+|||||||+|..+..+++..|. +++++|++ .+++.|+ ...+++++.+|..+ .++ .||.|++
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~~-~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~ 137 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred cCCCeEEEECCCccHHHHHHHHhCCc-EEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeee
Confidence 45689999999999999999887664 89999995 4888776 25577888888632 233 3888764
Q ss_pred --cchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHH
Q 018205 259 --KAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFL 336 (359)
Q Consensus 259 --~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~ 336 (359)
...++++. +...++++++++||| ||.+++.+...... .....++ .......+.+...|.
T Consensus 138 ~~~~~~~~~~--~~~~~~~e~~rvLkP---GG~l~f~~~~~~~~-------~~~~~~~-------~~~~~~~~~~~~~L~ 198 (236)
T 3orh_A 138 PLSEETWHTH--QFNFIKNHAFRLLKP---GGVLTYCNLTSWGE-------LMKSKYS-------DITIMFEETQVPALL 198 (236)
T ss_dssp CCBGGGTTTH--HHHHHHHTHHHHEEE---EEEEEECCHHHHHH-------HTTTTCS-------CHHHHHHHHTHHHHH
T ss_pred ecccchhhhc--chhhhhhhhhheeCC---CCEEEEEecCCchh-------hhhhhhh-------hhhhhhHHHHHHHHH
Confidence 45566664 446699999999999 88877643221100 0000000 001112456777889
Q ss_pred HcCCceeEE
Q 018205 337 DAGFSHFKI 345 (359)
Q Consensus 337 ~aGf~~~~~ 345 (359)
++||+...+
T Consensus 199 eaGF~~~~i 207 (236)
T 3orh_A 199 EAGFRRENI 207 (236)
T ss_dssp HHTCCGGGE
T ss_pred HcCCeEEEE
Confidence 999986544
No 117
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=99.27 E-value=5.4e-12 Score=110.36 Aligned_cols=121 Identities=17% Similarity=0.209 Sum_probs=91.7
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCC-CC-----CCccEEEEc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQ-SI-----PPADAFFFK 259 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~-~~-----p~~D~i~~~ 259 (359)
.+..+|||||||+|..+..++...|+.+++++|++. +++.|++ ..+++++.+|+.+ +. ..||+|++.
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 148 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence 457899999999999999999988999999999955 8877662 3469999999844 22 249999997
Q ss_pred chhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcC
Q 018205 260 AIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAG 339 (359)
Q Consensus 260 ~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aG 339 (359)
.+ . +...+++.+.++|+| ||.+++...... . . ..+++.+.++++|
T Consensus 149 ~~----~--~~~~~l~~~~~~Lkp---gG~l~~~~g~~~----~----~------------------~~~~~~~~l~~~g 193 (240)
T 1xdz_A 149 AV----A--RLSVLSELCLPLVKK---NGLFVALKAASA----E----E------------------ELNAGKKAITTLG 193 (240)
T ss_dssp CC----S--CHHHHHHHHGGGEEE---EEEEEEEECC-C----H----H------------------HHHHHHHHHHHTT
T ss_pred cc----C--CHHHHHHHHHHhcCC---CCEEEEEeCCCc----h----H------------------HHHHHHHHHHHcC
Confidence 63 2 245799999999999 888887531110 0 0 1245778889999
Q ss_pred CceeEEEEe
Q 018205 340 FSHFKITPV 348 (359)
Q Consensus 340 f~~~~~~~~ 348 (359)
|.+.++...
T Consensus 194 ~~~~~~~~~ 202 (240)
T 1xdz_A 194 GELENIHSF 202 (240)
T ss_dssp EEEEEEEEE
T ss_pred CeEeEEEEE
Confidence 998887654
No 118
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=99.27 E-value=1.1e-11 Score=103.83 Aligned_cols=132 Identities=14% Similarity=0.194 Sum_probs=89.4
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCC---CCC-CccEEEEcc
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQ---SIP-PADAFFFKA 260 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~---~~p-~~D~i~~~~ 260 (359)
+.+..+|||+|||+|.++..+++. +.+++++|+++ +++.|++ .++++++..|+.. ..+ .||+|+++.
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~ 97 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNL 97 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeC
Confidence 456789999999999999999987 77999999955 8887762 3689999977643 123 399998763
Q ss_pred -hhccC------CchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHH
Q 018205 261 -IFHAF------VDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEK 333 (359)
Q Consensus 261 -vl~~~------~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ 333 (359)
.+++. ..+....+|+++.++|+| ||.+++........... .. ....+|.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~----~~----------------~~~~~~~~ 154 (185)
T 3mti_A 98 GYLPSADKSVITKPHTTLEAIEKILDRLEV---GGRLAIMIYYGHDGGDM----EK----------------DAVLEYVI 154 (185)
T ss_dssp C-----------CHHHHHHHHHHHHHHEEE---EEEEEEEEC------CH----HH----------------HHHHHHHH
T ss_pred CCCCCcchhcccChhhHHHHHHHHHHhcCC---CcEEEEEEeCCCCCCHH----HH----------------HHHHHHHH
Confidence 22220 224556789999999999 89988876543322111 00 12344556
Q ss_pred HHHHcCCceeEEEEe
Q 018205 334 LFLDAGFSHFKITPV 348 (359)
Q Consensus 334 ll~~aGf~~~~~~~~ 348 (359)
.+...+|.+......
T Consensus 155 ~l~~~~~~~~~~~~~ 169 (185)
T 3mti_A 155 GLDQRVFTAMLYQPL 169 (185)
T ss_dssp HSCTTTEEEEEEEES
T ss_pred hCCCceEEEEEehhh
Confidence 666678888877766
No 119
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=99.27 E-value=1.2e-11 Score=106.20 Aligned_cols=129 Identities=11% Similarity=0.066 Sum_probs=100.0
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC-------CCCceEeeCCCCCCCC---CccEEEEcch
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD-------TDNLKFIAGDMFQSIP---PADAFFFKAI 261 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~-------~~~v~~~~~d~~~~~p---~~D~i~~~~v 261 (359)
++..+|+|||||+|.++..+++..|..+++++|++ .+++.|++ .+++++..+|.++.++ .||+|++..+
T Consensus 14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG~ 93 (225)
T 3kr9_A 14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAGM 93 (225)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcCC
Confidence 45689999999999999999999988899999995 48887762 4689999999987655 4999987665
Q ss_pred hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCc
Q 018205 262 FHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFS 341 (359)
Q Consensus 262 l~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~ 341 (359)
- .+-...+|..+.+.|++ +|++++ .+.. ..+..+++|.+.||.
T Consensus 94 G----g~~i~~Il~~~~~~L~~---~~~lVl-q~~~-----------------------------~~~~vr~~L~~~Gf~ 136 (225)
T 3kr9_A 94 G----GRLIARILEEGLGKLAN---VERLIL-QPNN-----------------------------REDDLRIWLQDHGFQ 136 (225)
T ss_dssp C----HHHHHHHHHHTGGGCTT---CCEEEE-EESS-----------------------------CHHHHHHHHHHTTEE
T ss_pred C----hHHHHHHHHHHHHHhCC---CCEEEE-ECCC-----------------------------CHHHHHHHHHHCCCE
Confidence 3 24457799999999998 777666 3221 235577889999999
Q ss_pred eeEEEEe---CCceeEEEEe
Q 018205 342 HFKITPV---YGIKSLIEVY 358 (359)
Q Consensus 342 ~~~~~~~---~~~~~vi~~~ 358 (359)
+++-.-+ +-++.+|.+.
T Consensus 137 i~~e~lv~e~~~~Yeii~~~ 156 (225)
T 3kr9_A 137 IVAESILEEAGKFYEILVVE 156 (225)
T ss_dssp EEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEEECCEEEEEEEEE
Confidence 8876543 4467777664
No 120
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=99.27 E-value=2.1e-11 Score=105.74 Aligned_cols=128 Identities=16% Similarity=0.192 Sum_probs=94.2
Q ss_pred cCCCCeEEEeCCC-cchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----CCCceEeeCCC--CCCCC--CccEEEEcc
Q 018205 192 FQGLGSLVDVGGG-TGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----TDNLKFIAGDM--FQSIP--PADAFFFKA 260 (359)
Q Consensus 192 ~~~~~~vlDvG~G-~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----~~~v~~~~~d~--~~~~p--~~D~i~~~~ 260 (359)
..+..+|||+||| +|.++..+++.. +.+++++|++. +++.|++ ..+++++.+|+ +.+++ .||+|+++-
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~np 131 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAP 131 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECC
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECC
Confidence 4567899999999 999999999987 77999999954 8877762 23799999996 23443 499999986
Q ss_pred hhccCCch-----------------HHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCC
Q 018205 261 IFHAFVDE-----------------DCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRG 323 (359)
Q Consensus 261 vl~~~~~~-----------------~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 323 (359)
.++..++. ....+++++.++|+| ||.+++......
T Consensus 132 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~------------------------- 183 (230)
T 3evz_A 132 PYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNP---GGKVALYLPDKE------------------------- 183 (230)
T ss_dssp CCC---------------CCSSSCHHHHHHHHHHGGGEEE---EEEEEEEEESCH-------------------------
T ss_pred CCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCC---CeEEEEEecccH-------------------------
Confidence 66554331 136799999999999 898888532210
Q ss_pred cccCHHHHHHHHHHcCCceeEEEEeCC
Q 018205 324 SERTEKEWEKLFLDAGFSHFKITPVYG 350 (359)
Q Consensus 324 ~~~t~~~~~~ll~~aGf~~~~~~~~~~ 350 (359)
...+++.+++++.||.+..+....+
T Consensus 184 --~~~~~~~~~l~~~g~~~~~~~~~~g 208 (230)
T 3evz_A 184 --KLLNVIKERGIKLGYSVKDIKFKVG 208 (230)
T ss_dssp --HHHHHHHHHHHHTTCEEEEEEECCC
T ss_pred --hHHHHHHHHHHHcCCceEEEEecCC
Confidence 0246678899999998777765544
No 121
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=99.27 E-value=1.3e-11 Score=112.42 Aligned_cols=156 Identities=14% Similarity=0.023 Sum_probs=105.8
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------------CCCceEeeCCCCC
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------------TDNLKFIAGDMFQ 248 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------------~~~v~~~~~d~~~ 248 (359)
.+++.+.....+..+|||||||+|.++..+++. +..+++++|++. +++.|++ ..+++++++|+.+
T Consensus 23 ~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 101 (313)
T 3bgv_A 23 EFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSK 101 (313)
T ss_dssp HHHHHHHHTC--CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTT
T ss_pred HHHHHhhhccCCCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccc
Confidence 344443322346789999999999999999874 577999999965 8776652 1378999999965
Q ss_pred -C----C--C--CccEEEEcchhccC-C-chHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHH------
Q 018205 249 -S----I--P--PADAFFFKAIFHAF-V-DEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKL------ 311 (359)
Q Consensus 249 -~----~--p--~~D~i~~~~vl~~~-~-~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~------ 311 (359)
+ + + .||+|++..++|+. . .++...+|++++++|+| ||.+++..+.... ......
T Consensus 102 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~~~~~~------l~~~~~~~~~~~ 172 (313)
T 3bgv_A 102 ELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSP---GGYFIGTTPNSFE------LIRRLEASETES 172 (313)
T ss_dssp SCSTTTCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEE---EEEEEEEEECHHH------HHHHHTTSSSSE
T ss_pred cchhhhcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCC---CcEEEEecCChHH------HHHHHHhhccCc
Confidence 2 3 2 59999999999987 3 35567899999999999 8888887654310 000000
Q ss_pred ---------hhhh------------hh-hh-hcCCcccCHHHHHHHHHHcCCceeEEEEe
Q 018205 312 ---------LYDM------------LM-MV-AVRGSERTEKEWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 312 ---------~~~~------------~~-~~-~~~g~~~t~~~~~~ll~~aGf~~~~~~~~ 348 (359)
+.+. .+ .. .......+.+++.+++++.||+++.....
T Consensus 173 ~~~~~~~~~f~~~~~~~~~~~~~~f~l~~~~~~~~~~~~~~~~~~l~~~~G~~~v~~~~f 232 (313)
T 3bgv_A 173 FGNEIYTVKFQKKGDYPLFGCKYDFNLEGVVDVPEFLVYFPLLNEMAKKYNMKLVYKKTF 232 (313)
T ss_dssp EECSSEEEEESCSSCCCSSCCEEEEEEC---CCEEECCCHHHHHHHGGGGTEEEEEEEEH
T ss_pred cCCeeEEEEeCCCCCCCCccceEEEEECCcccCcceEEcHHHHHHHHHHcCcEEEEecCH
Confidence 0000 00 00 00112367899999999999999988754
No 122
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=99.27 E-value=2.4e-11 Score=104.25 Aligned_cols=98 Identities=17% Similarity=0.240 Sum_probs=76.6
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCC-C--CC--CccEEEEcch
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQ-S--IP--PADAFFFKAI 261 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~-~--~p--~~D~i~~~~v 261 (359)
+..+|||||||+|.++..+++.+|+.+++++|++. +++.|++ ..+++++.+|+.+ + ++ .||+|+++..
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~ 120 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 120 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence 46799999999999999999999999999999954 8877662 3689999999965 2 33 3999998865
Q ss_pred hccCCch------HHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 262 FHAFVDE------DCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 262 l~~~~~~------~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
....... ....+++++.++|+| ||.+++..
T Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~ 156 (214)
T 1yzh_A 121 DPWPKKRHEKRRLTYKTFLDTFKRILPE---NGEIHFKT 156 (214)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCT---TCEEEEEE
T ss_pred CCccccchhhhccCCHHHHHHHHHHcCC---CcEEEEEe
Confidence 4322110 124699999999999 89888754
No 123
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=99.27 E-value=6.4e-12 Score=112.26 Aligned_cols=125 Identities=16% Similarity=0.172 Sum_probs=92.0
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHH-CCCCeEEEeecc-cccccCCC----C---CCceEeeCCCCCCCC--
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEA-FPGIKCTVLDLP-HVVPKVPD----T---DNLKFIAGDMFQSIP-- 251 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~~-~~~~~a~~----~---~~v~~~~~d~~~~~p-- 251 (359)
.++..+. ..+..+|||+|||+|.++..+++. .|+.+++++|++ .+++.|++ . +++++..+|+.+.++
T Consensus 101 ~~~~~~~--~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~ 178 (275)
T 1yb2_A 101 YIIMRCG--LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQ 178 (275)
T ss_dssp -----CC--CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSC
T ss_pred HHHHHcC--CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcCC
Confidence 3444454 566789999999999999999998 788999999995 47776652 2 579999999976554
Q ss_pred CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHH
Q 018205 252 PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEW 331 (359)
Q Consensus 252 ~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~ 331 (359)
.||+|++ +.++. ..+|+++.++|+| ||.+++...... ..+++
T Consensus 179 ~fD~Vi~-----~~~~~--~~~l~~~~~~Lkp---gG~l~i~~~~~~----------------------------~~~~~ 220 (275)
T 1yb2_A 179 MYDAVIA-----DIPDP--WNHVQKIASMMKP---GSVATFYLPNFD----------------------------QSEKT 220 (275)
T ss_dssp CEEEEEE-----CCSCG--GGSHHHHHHTEEE---EEEEEEEESSHH----------------------------HHHHH
T ss_pred CccEEEE-----cCcCH--HHHHHHHHHHcCC---CCEEEEEeCCHH----------------------------HHHHH
Confidence 3999998 34444 3599999999999 898888763210 12445
Q ss_pred HHHHHHcCCceeEEEE
Q 018205 332 EKLFLDAGFSHFKITP 347 (359)
Q Consensus 332 ~~ll~~aGf~~~~~~~ 347 (359)
.+.++++||..+++..
T Consensus 221 ~~~l~~~Gf~~~~~~~ 236 (275)
T 1yb2_A 221 VLSLSASGMHHLETVE 236 (275)
T ss_dssp HHHSGGGTEEEEEEEE
T ss_pred HHHHHHCCCeEEEEEE
Confidence 6677778888777765
No 124
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=99.27 E-value=2.5e-12 Score=111.48 Aligned_cols=114 Identities=11% Similarity=0.114 Sum_probs=87.4
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-CCCceEeeCCCCC--CCC---CccEEEEcchhccC
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-TDNLKFIAGDMFQ--SIP---PADAFFFKAIFHAF 265 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-~~~v~~~~~d~~~--~~p---~~D~i~~~~vl~~~ 265 (359)
.+..+|||||||+|.++..+++. +.+++++|++. +++.+++ ..+++++++|+.+ +++ .||+|+++
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~------ 118 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR------ 118 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE------
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC------
Confidence 45789999999999999999998 67999999955 8887763 5689999999965 333 49999987
Q ss_pred CchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCceeEE
Q 018205 266 VDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKI 345 (359)
Q Consensus 266 ~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~~ 345 (359)
.+ ...+|++++++|+| ||.++.. +...+.+++.+++.++||....+
T Consensus 119 ~~--~~~~l~~~~~~Lkp---gG~l~~~-----------------------------~~~~~~~~~~~~l~~~Gf~~~~~ 164 (226)
T 3m33_A 119 RG--PTSVILRLPELAAP---DAHFLYV-----------------------------GPRLNVPEVPERLAAVGWDIVAE 164 (226)
T ss_dssp SC--CSGGGGGHHHHEEE---EEEEEEE-----------------------------ESSSCCTHHHHHHHHTTCEEEEE
T ss_pred CC--HHHHHHHHHHHcCC---CcEEEEe-----------------------------CCcCCHHHHHHHHHHCCCeEEEE
Confidence 12 24589999999999 8877710 01124456888888999988776
Q ss_pred EEe
Q 018205 346 TPV 348 (359)
Q Consensus 346 ~~~ 348 (359)
...
T Consensus 165 ~~~ 167 (226)
T 3m33_A 165 DHV 167 (226)
T ss_dssp EEE
T ss_pred Eee
Confidence 544
No 125
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=99.26 E-value=6.9e-12 Score=103.62 Aligned_cols=134 Identities=11% Similarity=0.090 Sum_probs=91.9
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----C--CCceEeeCCCCCC-CCC-ccEEEEcchh
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----T--DNLKFIAGDMFQS-IPP-ADAFFFKAIF 262 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----~--~~v~~~~~d~~~~-~p~-~D~i~~~~vl 262 (359)
.+..+|||+|||+|.++..++...|+++++++|+++ +++.++. . .++++ .|..+. .++ ||+|++..++
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~~~~~DvVLa~k~L 125 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVYKGTYDVVFLLKML 125 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHTTSEEEEEEEETCH
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCCCCCcChhhHhhHH
Confidence 457899999999999999999999999999999965 9988772 1 24444 666443 333 9999999999
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccC-HHHHHHHHHHcCCc
Q 018205 263 HAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERT-EKEWEKLFLDAGFS 341 (359)
Q Consensus 263 ~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t-~~~~~~ll~~aGf~ 341 (359)
|++ ++....+.++.+.|+| ||.++-++ +..-.+..+ |..-+ ...|++.+ ...+.
T Consensus 126 HlL--~~~~~al~~v~~~L~p---ggvfISfp-tksl~Gr~~------------------gm~~~Y~~~~~~~~-~~~~~ 180 (200)
T 3fzg_A 126 PVL--KQQDVNILDFLQLFHT---QNFVISFP-IKSLSGKEK------------------GMEENYQLWFESFT-KGWIK 180 (200)
T ss_dssp HHH--HHTTCCHHHHHHTCEE---EEEEEEEE-CCCCC--CT------------------TCCCCHHHHHHHHT-TTTSC
T ss_pred Hhh--hhhHHHHHHHHHHhCC---CCEEEEeC-hHHhcCCCc------------------chhhhHHHHHHHhc-cCcce
Confidence 999 3334577799999999 55444444 322222110 11112 34455555 66777
Q ss_pred eeEEEEeCCcee
Q 018205 342 HFKITPVYGIKS 353 (359)
Q Consensus 342 ~~~~~~~~~~~~ 353 (359)
+++...+++-..
T Consensus 181 ~~~~~~~~nEl~ 192 (200)
T 3fzg_A 181 ILDSKVIGNELV 192 (200)
T ss_dssp EEEEEEETTEEE
T ss_pred eeeeeeeCceEE
Confidence 777777765443
No 126
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=99.25 E-value=3e-12 Score=111.66 Aligned_cols=100 Identities=15% Similarity=0.168 Sum_probs=76.0
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----CCCceEeeCCCCC---CCC--CccEEEE-cc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----TDNLKFIAGDMFQ---SIP--PADAFFF-KA 260 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----~~~v~~~~~d~~~---~~p--~~D~i~~-~~ 260 (359)
.+..+|||||||+|.++..+++..+ .+++++|++. +++.|++ ..+++++.+|+.+ +++ .||+|++ .+
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~ 137 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCC-CeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence 4568999999999999999976543 3899999965 8877662 3678999999843 343 4999999 55
Q ss_pred h--hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 261 I--FHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 261 v--l~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
. .+.+.......++++++++|+| ||.+++.+..
T Consensus 138 ~~~~~~~~~~~~~~~l~~~~r~Lkp---gG~l~~~~~~ 172 (236)
T 1zx0_A 138 PLSEETWHTHQFNFIKNHAFRLLKP---GGVLTYCNLT 172 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEE---EEEEEECCHH
T ss_pred ccchhhhhhhhHHHHHHHHHHhcCC---CeEEEEEecC
Confidence 4 3344444556789999999999 8988886643
No 127
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=99.25 E-value=1.4e-11 Score=114.65 Aligned_cols=107 Identities=18% Similarity=0.335 Sum_probs=84.9
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC---------CCCceEeeCCCCCCCC-
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD---------TDNLKFIAGDMFQSIP- 251 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~---------~~~v~~~~~d~~~~~p- 251 (359)
.+++.++ .....+|||+|||+|.++..+++.+|+.+++++|++. +++.|++ ..++++..+|+++.++
T Consensus 213 ~ll~~l~--~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~ 290 (375)
T 4dcm_A 213 FFMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEP 290 (375)
T ss_dssp HHHHTCC--CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCT
T ss_pred HHHHhCc--ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCC
Confidence 4566665 3445899999999999999999999999999999965 8877762 1257889999987665
Q ss_pred -CccEEEEcchhcc---CCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 252 -PADAFFFKAIFHA---FVDEDCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 252 -~~D~i~~~~vl~~---~~~~~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
.||+|+++..+|+ ..+....++++++.++|+| ||.++++.
T Consensus 291 ~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~iv~ 334 (375)
T 4dcm_A 291 FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKI---NGELYIVA 334 (375)
T ss_dssp TCEEEEEECCCC-------CCHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred CCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCC---CcEEEEEE
Confidence 4999999988885 3455556799999999999 89888864
No 128
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=99.24 E-value=7.9e-12 Score=105.74 Aligned_cols=134 Identities=13% Similarity=0.170 Sum_probs=94.0
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCCC--C-C-CccEEEE
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQS--I-P-PADAFFF 258 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~~--~-p-~~D~i~~ 258 (359)
..+..+|||+|||+|.++..+++.+ |..+++++|++. +++.|++ .++++++.+|+.+. . + .||+|++
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~ 99 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMF 99 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEE
Confidence 3567899999999999999999986 677999999954 8887762 36899999997441 2 2 4999998
Q ss_pred cchhcc-------CCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHH
Q 018205 259 KAIFHA-------FVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEW 331 (359)
Q Consensus 259 ~~vl~~-------~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~ 331 (359)
...+.. ...++..++++++.++|+| ||.+++........... .. ....+|
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~---gG~l~~~~~~~~~~~~~----~~----------------~~~~~~ 156 (197)
T 3eey_A 100 NLGYLPSGDHSISTRPETTIQALSKAMELLVT---GGIITVVIYYGGDTGFE----EK----------------EKVLEF 156 (197)
T ss_dssp EESBCTTSCTTCBCCHHHHHHHHHHHHHHEEE---EEEEEEEECCBTTTBSH----HH----------------HHHHHH
T ss_pred cCCcccCcccccccCcccHHHHHHHHHHhCcC---CCEEEEEEccCCCCcHH----HH----------------HHHHHH
Confidence 765511 1123445799999999999 89988877554332211 00 012334
Q ss_pred HHHHHHcCCceeEEEEe
Q 018205 332 EKLFLDAGFSHFKITPV 348 (359)
Q Consensus 332 ~~ll~~aGf~~~~~~~~ 348 (359)
.+.+...+|.+......
T Consensus 157 ~~~l~~~~~~v~~~~~~ 173 (197)
T 3eey_A 157 LKGVDQKKFIVQRTDFI 173 (197)
T ss_dssp HTTSCTTTEEEEEEEET
T ss_pred HHhCCCCcEEEEEEEec
Confidence 44455677888777665
No 129
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=99.24 E-value=1.6e-11 Score=108.29 Aligned_cols=126 Identities=13% Similarity=0.209 Sum_probs=96.4
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHH-CCCCeEEEeecc-cccccCCC-------CCCceEeeCCCCCCCC--
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEA-FPGIKCTVLDLP-HVVPKVPD-------TDNLKFIAGDMFQSIP-- 251 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~~-~~~~~a~~-------~~~v~~~~~d~~~~~p-- 251 (359)
.++..+. ..+..+|||+|||+|.++..+++. .|+.+++++|++ .+++.|++ .+++++..+|+.+.++
T Consensus 84 ~i~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (255)
T 3mb5_A 84 LIVAYAG--ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEE 161 (255)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCCC
T ss_pred HHHHhhC--CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCCC
Confidence 4455555 567789999999999999999999 789999999995 48877762 3569999999976555
Q ss_pred CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHH
Q 018205 252 PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEW 331 (359)
Q Consensus 252 ~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~ 331 (359)
.||+|++ +.++. ..+++++.++|+| ||.+++..+... ..+++
T Consensus 162 ~~D~v~~-----~~~~~--~~~l~~~~~~L~~---gG~l~~~~~~~~----------------------------~~~~~ 203 (255)
T 3mb5_A 162 NVDHVIL-----DLPQP--ERVVEHAAKALKP---GGFFVAYTPCSN----------------------------QVMRL 203 (255)
T ss_dssp SEEEEEE-----CSSCG--GGGHHHHHHHEEE---EEEEEEEESSHH----------------------------HHHHH
T ss_pred CcCEEEE-----CCCCH--HHHHHHHHHHcCC---CCEEEEEECCHH----------------------------HHHHH
Confidence 3999997 34444 3589999999999 898888652210 13456
Q ss_pred HHHHHHcC--CceeEEEEe
Q 018205 332 EKLFLDAG--FSHFKITPV 348 (359)
Q Consensus 332 ~~ll~~aG--f~~~~~~~~ 348 (359)
.++++++| |..+++...
T Consensus 204 ~~~l~~~g~~f~~~~~~e~ 222 (255)
T 3mb5_A 204 HEKLREFKDYFMKPRTINV 222 (255)
T ss_dssp HHHHHHTGGGBSCCEEECC
T ss_pred HHHHHHcCCCccccEEEEE
Confidence 67888888 887777654
No 130
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=99.24 E-value=2.6e-11 Score=104.26 Aligned_cols=129 Identities=9% Similarity=0.014 Sum_probs=100.2
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCCCCC---CccEEEEcch
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQSIP---PADAFFFKAI 261 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~~~p---~~D~i~~~~v 261 (359)
++..+|+|||||+|.++..+++..|..+++++|+++ +++.|++ .+++++..+|.++..+ .||+|++.++
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGm 99 (230)
T 3lec_A 20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICGM 99 (230)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeCC
Confidence 456899999999999999999998888999999954 8887762 4689999999987543 4999987665
Q ss_pred hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCc
Q 018205 262 FHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFS 341 (359)
Q Consensus 262 l~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~ 341 (359)
.- +-...+|....+.|++ +|.+++.- .. ..+.++++|.+.||.
T Consensus 100 Gg----~lI~~IL~~~~~~l~~---~~~lIlqp-~~-----------------------------~~~~lr~~L~~~Gf~ 142 (230)
T 3lec_A 100 GG----RLIADILNNDIDKLQH---VKTLVLQP-NN-----------------------------REDDLRKWLAANDFE 142 (230)
T ss_dssp CH----HHHHHHHHHTGGGGTT---CCEEEEEE-SS-----------------------------CHHHHHHHHHHTTEE
T ss_pred ch----HHHHHHHHHHHHHhCc---CCEEEEEC-CC-----------------------------ChHHHHHHHHHCCCE
Confidence 42 4466799999999998 77766633 10 245678999999999
Q ss_pred eeEEEEe---CCceeEEEEe
Q 018205 342 HFKITPV---YGIKSLIEVY 358 (359)
Q Consensus 342 ~~~~~~~---~~~~~vi~~~ 358 (359)
+++-.-+ +-++.+|.+.
T Consensus 143 i~~E~lv~e~~~~Yeii~~~ 162 (230)
T 3lec_A 143 IVAEDILTENDKRYEILVVK 162 (230)
T ss_dssp EEEEEEEEC--CEEEEEEEE
T ss_pred EEEEEEEEECCEEEEEEEEE
Confidence 8887644 4567777765
No 131
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=99.23 E-value=2.8e-11 Score=107.89 Aligned_cols=150 Identities=12% Similarity=0.119 Sum_probs=96.6
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-cccc-CCCCCCceEee-CCCCC----CCC--C
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPK-VPDTDNLKFIA-GDMFQ----SIP--P 252 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~-a~~~~~v~~~~-~d~~~----~~p--~ 252 (359)
..+++.+. ...+..+|||||||+|.++..+++. +..+++++|++. |++. ++...++.... .|+.. .+| .
T Consensus 74 ~~~l~~~~-~~~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~ 151 (291)
T 3hp7_A 74 EKALAVFN-LSVEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGL 151 (291)
T ss_dssp HHHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCC
T ss_pred HHHHHhcC-CCccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCC
Confidence 34566665 1224679999999999999998886 345899999954 8887 34455654433 34311 233 3
Q ss_pred ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEe-eecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHH
Q 018205 253 ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIID-IVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEW 331 (359)
Q Consensus 253 ~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~ 331 (359)
||+|++..+++++ ..+|.+++++|+| ||.+++.- +.+...... +.......+.. ...++.+++
T Consensus 152 fD~v~~d~sf~sl-----~~vL~e~~rvLkp---GG~lv~lvkPqfe~~~~~--~~~~G~vrd~~------~~~~~~~~v 215 (291)
T 3hp7_A 152 PSFASIDVSFISL-----NLILPALAKILVD---GGQVVALVKPQFEAGREQ--IGKNGIVRESS------IHEKVLETV 215 (291)
T ss_dssp CSEEEECCSSSCG-----GGTHHHHHHHSCT---TCEEEEEECGGGTSCGGG--CC-CCCCCCHH------HHHHHHHHH
T ss_pred CCEEEEEeeHhhH-----HHHHHHHHHHcCc---CCEEEEEECcccccChhh--cCCCCccCCHH------HHHHHHHHH
Confidence 9999998888755 4599999999999 99998852 111111000 00000000000 023468899
Q ss_pred HHHHHHcCCceeEEEEeC
Q 018205 332 EKLFLDAGFSHFKITPVY 349 (359)
Q Consensus 332 ~~ll~~aGf~~~~~~~~~ 349 (359)
.++++++||.+..+...+
T Consensus 216 ~~~~~~~Gf~v~~~~~sp 233 (291)
T 3hp7_A 216 TAFAVDYGFSVKGLDFSP 233 (291)
T ss_dssp HHHHHHTTEEEEEEEECS
T ss_pred HHHHHHCCCEEEEEEECC
Confidence 999999999988887653
No 132
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=99.23 E-value=6.7e-12 Score=115.74 Aligned_cols=110 Identities=18% Similarity=0.281 Sum_probs=87.5
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----CCCceEeeCCCCCCCC-Ccc
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----TDNLKFIAGDMFQSIP-PAD 254 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----~~~v~~~~~d~~~~~p-~~D 254 (359)
..+++.++ .....+|||+|||+|.++..+++.+|+.+++++|++. +++.+++ ...++++.+|+++..+ .||
T Consensus 186 ~~ll~~l~--~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD 263 (343)
T 2pjd_A 186 QLLLSTLT--PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRFD 263 (343)
T ss_dssp HHHHHHSC--TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCEE
T ss_pred HHHHHhcC--cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCCee
Confidence 45566664 2345799999999999999999999999999999965 7877662 3346788999866433 599
Q ss_pred EEEEcchhccC---CchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 255 AFFFKAIFHAF---VDEDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 255 ~i~~~~vl~~~---~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
+|+++..+|+. ..+...+++++++++|+| ||.++++...
T Consensus 264 ~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~ 305 (343)
T 2pjd_A 264 MIISNPPFHDGMQTSLDAAQTLIRGAVRHLNS---GGELRIVANA 305 (343)
T ss_dssp EEEECCCCCSSSHHHHHHHHHHHHHHGGGEEE---EEEEEEEEET
T ss_pred EEEECCCcccCccCCHHHHHHHHHHHHHhCCC---CcEEEEEEcC
Confidence 99999999862 345567899999999999 8999887654
No 133
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=99.23 E-value=9.8e-12 Score=109.28 Aligned_cols=121 Identities=13% Similarity=0.052 Sum_probs=91.9
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCC-CC-----CCccEEEEc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQ-SI-----PPADAFFFK 259 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~-~~-----p~~D~i~~~ 259 (359)
.+..+|||||||+|..+..++..+|+.+++++|++. +++.|++ ..+++++++|+.+ .. ..||+|++.
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~ 158 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR 158 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence 457899999999999999999999999999999965 8877762 3469999999854 22 249999997
Q ss_pred chhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcC
Q 018205 260 AIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAG 339 (359)
Q Consensus 260 ~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aG 339 (359)
.+- +...+++.+.++|+| ||.+++....... . ...++.+.++..|
T Consensus 159 a~~------~~~~ll~~~~~~Lkp---gG~l~~~~g~~~~--------~------------------e~~~~~~~l~~~G 203 (249)
T 3g89_A 159 AVA------PLCVLSELLLPFLEV---GGAAVAMKGPRVE--------E------------------ELAPLPPALERLG 203 (249)
T ss_dssp SSC------CHHHHHHHHGGGEEE---EEEEEEEECSCCH--------H------------------HHTTHHHHHHHHT
T ss_pred CcC------CHHHHHHHHHHHcCC---CeEEEEEeCCCcH--------H------------------HHHHHHHHHHHcC
Confidence 542 235699999999999 8988875522110 0 1234667778889
Q ss_pred CceeEEEEe
Q 018205 340 FSHFKITPV 348 (359)
Q Consensus 340 f~~~~~~~~ 348 (359)
|...++.++
T Consensus 204 ~~~~~~~~~ 212 (249)
T 3g89_A 204 GRLGEVLAL 212 (249)
T ss_dssp EEEEEEEEE
T ss_pred CeEEEEEEe
Confidence 999888766
No 134
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=99.23 E-value=1.2e-10 Score=100.84 Aligned_cols=140 Identities=14% Similarity=0.119 Sum_probs=95.8
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeeccc-ccccC----CCCCCceEeeCCCCCC-----CC-CccEEEEc
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDLPH-VVPKV----PDTDNLKFIAGDMFQS-----IP-PADAFFFK 259 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~-~~~~a----~~~~~v~~~~~d~~~~-----~p-~~D~i~~~ 259 (359)
+.+..+|||+|||+|.++..+++.. |+.+++++|++. +++.+ +...+++++.+|+.+. .+ .||+|++.
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~ 150 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence 4567899999999999999999885 667999999954 55443 3347899999999651 23 49999975
Q ss_pred chhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcC
Q 018205 260 AIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAG 339 (359)
Q Consensus 260 ~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aG 339 (359)
.. .......++++++++|+| ||.+++. .......... . . .....+++.++ .++
T Consensus 151 ~~----~~~~~~~~l~~~~~~Lkp---gG~l~~~-~~~~~~~~~~---~----~----------~~~~~~~l~~l-~~~- 203 (227)
T 1g8a_A 151 VA----QPTQAKILIDNAEVYLKR---GGYGMIA-VKSRSIDVTK---E----P----------EQVFREVEREL-SEY- 203 (227)
T ss_dssp CC----STTHHHHHHHHHHHHEEE---EEEEEEE-EEGGGTCTTS---C----H----------HHHHHHHHHHH-HTT-
T ss_pred CC----CHhHHHHHHHHHHHhcCC---CCEEEEE-EecCCCCCCC---C----h----------hhhhHHHHHHH-Hhh-
Confidence 44 222333469999999999 8888887 2221111000 0 0 01235677777 777
Q ss_pred CceeEEEEeCCc---eeEEEEe
Q 018205 340 FSHFKITPVYGI---KSLIEVY 358 (359)
Q Consensus 340 f~~~~~~~~~~~---~~vi~~~ 358 (359)
|++++....... +.++.++
T Consensus 204 f~~~~~~~~~~~~~~~~~~~~~ 225 (227)
T 1g8a_A 204 FEVIERLNLEPYEKDHALFVVR 225 (227)
T ss_dssp SEEEEEEECTTTSSSEEEEEEE
T ss_pred ceeeeEeccCcccCCCEEEEEE
Confidence 999998887544 5555554
No 135
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=99.22 E-value=1.2e-10 Score=98.59 Aligned_cols=104 Identities=20% Similarity=0.220 Sum_probs=78.1
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCC--CCeEEEeecccccccCCCCCCceEeeCCCCCC-----------
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFP--GIKCTVLDLPHVVPKVPDTDNLKFIAGDMFQS----------- 249 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p--~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~----------- 249 (359)
.+.+.+. .+.+..+|||+|||+|.++..+++++| +.+++++|++++.. .++++++.+|+.+.
T Consensus 12 ~~~~~~~-~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~~----~~~v~~~~~d~~~~~~~~~~~~~~i 86 (201)
T 2plw_A 12 ELDNKYL-FLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMDP----IPNVYFIQGEIGKDNMNNIKNINYI 86 (201)
T ss_dssp HHHHHHC-CCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCCC----CTTCEEEECCTTTTSSCCC------
T ss_pred HHHHHcC-CCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccCC----CCCceEEEccccchhhhhhcccccc
Confidence 4455554 245668999999999999999999988 68999999977422 35789999999653
Q ss_pred ---------------CC--CccEEEEcchhccCC----chH-----HHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 250 ---------------IP--PADAFFFKAIFHAFV----DED-----CLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 250 ---------------~p--~~D~i~~~~vl~~~~----~~~-----~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
++ .||+|++...+|... +.. ..+++++++++|+| ||.+++..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkp---gG~lv~~~ 154 (201)
T 2plw_A 87 DNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINI---GGTYIVKM 154 (201)
T ss_dssp -----CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred ccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccC---CCEEEEEE
Confidence 23 499999988776542 111 12489999999999 88877643
No 136
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=99.22 E-value=2.4e-11 Score=110.04 Aligned_cols=129 Identities=14% Similarity=0.153 Sum_probs=92.4
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC----------CCCceEeeCCCCC---C--CCCccEE
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD----------TDNLKFIAGDMFQ---S--IPPADAF 256 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~----------~~~v~~~~~d~~~---~--~p~~D~i 256 (359)
+++.+|||||||+|.++..+++..+..+++++|++. +++.|++ .++++++.+|+.+ . ...||+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 456899999999999999999877788999999954 7776652 4689999999854 1 1249999
Q ss_pred EEcchhccCCchHH--HHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHH
Q 018205 257 FFKAIFHAFVDEDC--LKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKL 334 (359)
Q Consensus 257 ~~~~vl~~~~~~~~--~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~l 334 (359)
++....+..+.... .+++++++++|+| ||.+++..... .++ ....+++.+.
T Consensus 174 i~d~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~~~~~--------------~~~----------~~~~~~~~~~ 226 (304)
T 3bwc_A 174 IIDTTDPAGPASKLFGEAFYKDVLRILKP---DGICCNQGESI--------------WLD----------LELIEKMSRF 226 (304)
T ss_dssp EEECC---------CCHHHHHHHHHHEEE---EEEEEEEECCT--------------TTC----------HHHHHHHHHH
T ss_pred EECCCCccccchhhhHHHHHHHHHHhcCC---CcEEEEecCCc--------------ccc----------hHHHHHHHHH
Confidence 99766655443322 4799999999999 88877753210 000 1135678899
Q ss_pred HHHcCCceeEEEEe
Q 018205 335 FLDAGFSHFKITPV 348 (359)
Q Consensus 335 l~~aGf~~~~~~~~ 348 (359)
++++||..+.+...
T Consensus 227 l~~~GF~~v~~~~~ 240 (304)
T 3bwc_A 227 IRETGFASVQYALM 240 (304)
T ss_dssp HHHHTCSEEEEEEC
T ss_pred HHhCCCCcEEEEEe
Confidence 99999998887755
No 137
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=99.22 E-value=2.6e-11 Score=107.97 Aligned_cols=95 Identities=17% Similarity=0.283 Sum_probs=76.6
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC------CCCceEeeCCCCC-CCCCccEEEEcchhc
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD------TDNLKFIAGDMFQ-SIPPADAFFFKAIFH 263 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~------~~~v~~~~~d~~~-~~p~~D~i~~~~vl~ 263 (359)
+.++.+|||||||+|.++..++.+.++.+++++|++ ++++.|++ .++++++++|+.+ +...||+|++...
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~d~~FDvV~~~a~-- 197 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVIDGLEFDVLMVAAL-- 197 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGGGCCCSEEEECTT--
T ss_pred CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCCCCCcCEEEECCC--
Confidence 567899999999999877666666789999999995 59888873 3789999999955 2235999998654
Q ss_pred cCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 264 AFVDEDCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 264 ~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
. ++..+++++++++|+| ||++++.+
T Consensus 198 -~--~d~~~~l~el~r~LkP---GG~Lvv~~ 222 (298)
T 3fpf_A 198 -A--EPKRRVFRNIHRYVDT---ETRIIYRT 222 (298)
T ss_dssp -C--SCHHHHHHHHHHHCCT---TCEEEEEE
T ss_pred -c--cCHHHHHHHHHHHcCC---CcEEEEEc
Confidence 2 3345799999999999 99999866
No 138
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=99.21 E-value=1e-10 Score=96.50 Aligned_cols=106 Identities=16% Similarity=0.242 Sum_probs=82.1
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeecccccccCCCCCCceEeeCCCCC-C--------CC-
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDLPHVVPKVPDTDNLKFIAGDMFQ-S--------IP- 251 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~-~--------~p- 251 (359)
.+++.+. ...+..+|||+|||+|.++..+++.+ |+.+++++|++.+++. .++++..+|+.+ + ++
T Consensus 12 ~~~~~~~-~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~----~~~~~~~~d~~~~~~~~~~~~~~~~ 86 (180)
T 1ej0_A 12 EIQQSDK-LFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPI----VGVDFLQGDFRDELVMKALLERVGD 86 (180)
T ss_dssp HHHHHHC-CCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCCC----TTEEEEESCTTSHHHHHHHHHHHTT
T ss_pred HHHHHhC-CCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcccccc----CcEEEEEcccccchhhhhhhccCCC
Confidence 3444443 23566899999999999999999984 7789999999664433 679999999965 3 44
Q ss_pred -CccEEEEcchhccCCchH---------HHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 252 -PADAFFFKAIFHAFVDED---------CLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 252 -~~D~i~~~~vl~~~~~~~---------~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
.||+|++...+|...... ...+++++.++|+| ||.+++....
T Consensus 87 ~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~---gG~l~~~~~~ 138 (180)
T 1ej0_A 87 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAP---GGSFVVKVFQ 138 (180)
T ss_dssp CCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEEES
T ss_pred CceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCC---CcEEEEEEec
Confidence 499999998888765431 14789999999999 8888876643
No 139
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=99.21 E-value=1.8e-11 Score=102.58 Aligned_cols=120 Identities=23% Similarity=0.307 Sum_probs=91.4
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCCC---CC
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQS---IP 251 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~~---~p 251 (359)
.+++.+. ..+..+|||+|||+|.++..+++.. .+++++|++. +++.+++ ..++++..+|+.+. .+
T Consensus 24 ~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 99 (192)
T 1l3i_A 24 LIMCLAE--PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIP 99 (192)
T ss_dssp HHHHHHC--CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSC
T ss_pred HHHHhcC--CCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCC
Confidence 3444454 5567899999999999999999886 7999999954 7776652 26899999998542 24
Q ss_pred CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHH
Q 018205 252 PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEW 331 (359)
Q Consensus 252 ~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~ 331 (359)
.||+|++..+++++ ..+++++.++|+| ||.+++...... +..++
T Consensus 100 ~~D~v~~~~~~~~~-----~~~l~~~~~~l~~---gG~l~~~~~~~~----------------------------~~~~~ 143 (192)
T 1l3i_A 100 DIDIAVVGGSGGEL-----QEILRIIKDKLKP---GGRIIVTAILLE----------------------------TKFEA 143 (192)
T ss_dssp CEEEEEESCCTTCH-----HHHHHHHHHTEEE---EEEEEEEECBHH----------------------------HHHHH
T ss_pred CCCEEEECCchHHH-----HHHHHHHHHhcCC---CcEEEEEecCcc----------------------------hHHHH
Confidence 69999998887543 5699999999999 888887653210 23567
Q ss_pred HHHHHHcCCce
Q 018205 332 EKLFLDAGFSH 342 (359)
Q Consensus 332 ~~ll~~aGf~~ 342 (359)
.+++++.||.+
T Consensus 144 ~~~l~~~g~~~ 154 (192)
T 1l3i_A 144 MECLRDLGFDV 154 (192)
T ss_dssp HHHHHHTTCCC
T ss_pred HHHHHHCCCce
Confidence 78889999954
No 140
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=99.20 E-value=3.7e-11 Score=99.90 Aligned_cols=120 Identities=15% Similarity=0.210 Sum_probs=90.7
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCCCCC--Cc
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQSIP--PA 253 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~~~p--~~ 253 (359)
.+++.+. ..+..+|||+|||+|.++..+++ +..+++++|++. +++.+++ ..+++++.+|+.++++ .|
T Consensus 26 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 101 (183)
T 2yxd_A 26 VSIGKLN--LNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLEF 101 (183)
T ss_dssp HHHHHHC--CCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGGCCC
T ss_pred HHHHHcC--CCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccCCCC
Confidence 4445554 45678999999999999999988 688999999954 8877663 2579999999865444 59
Q ss_pred cEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHH
Q 018205 254 DAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEK 333 (359)
Q Consensus 254 D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ 333 (359)
|+|++..+ .....++++++++ | ||.+++...... +..++.+
T Consensus 102 D~i~~~~~------~~~~~~l~~~~~~--~---gG~l~~~~~~~~----------------------------~~~~~~~ 142 (183)
T 2yxd_A 102 NKAFIGGT------KNIEKIIEILDKK--K---INHIVANTIVLE----------------------------NAAKIIN 142 (183)
T ss_dssp SEEEECSC------SCHHHHHHHHHHT--T---CCEEEEEESCHH----------------------------HHHHHHH
T ss_pred cEEEECCc------ccHHHHHHHHhhC--C---CCEEEEEecccc----------------------------cHHHHHH
Confidence 99999888 2335689999998 7 899888663210 1355778
Q ss_pred HHHHcCCceeEE
Q 018205 334 LFLDAGFSHFKI 345 (359)
Q Consensus 334 ll~~aGf~~~~~ 345 (359)
.++++||.+..+
T Consensus 143 ~l~~~g~~~~~~ 154 (183)
T 2yxd_A 143 EFESRGYNVDAV 154 (183)
T ss_dssp HHHHTTCEEEEE
T ss_pred HHHHcCCeEEEE
Confidence 889999876554
No 141
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=99.20 E-value=9.8e-11 Score=103.53 Aligned_cols=124 Identities=15% Similarity=0.205 Sum_probs=92.0
Q ss_pred cC-CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC-------CCCceEeeCCCCCC---CC--CccEEE
Q 018205 192 FQ-GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD-------TDNLKFIAGDMFQS---IP--PADAFF 257 (359)
Q Consensus 192 ~~-~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~-------~~~v~~~~~d~~~~---~p--~~D~i~ 257 (359)
.. +..+|||+|||+|.++..++++.+. +++++|++ .+++.|++ .++++++.+|+.+. ++ .||+|+
T Consensus 46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii 124 (259)
T 3lpm_A 46 LPIRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVT 124 (259)
T ss_dssp CCSSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEE
T ss_pred CCCCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEE
Confidence 45 6789999999999999999998765 99999995 48777662 35799999999652 32 499999
Q ss_pred EcchhccC------------------CchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhh
Q 018205 258 FKAIFHAF------------------VDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMV 319 (359)
Q Consensus 258 ~~~vl~~~------------------~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (359)
++-.++.. .......+++.+.++|+| ||.++++. +.
T Consensus 125 ~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~---~~-------------------- 178 (259)
T 3lpm_A 125 CNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQ---GGKANFVH---RP-------------------- 178 (259)
T ss_dssp ECCCC-----------------------HHHHHHHHHHHHHEEE---EEEEEEEE---CT--------------------
T ss_pred ECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccC---CcEEEEEE---cH--------------------
Confidence 96443222 113346799999999999 88888842 11
Q ss_pred hcCCcccCHHHHHHHHHHcCCceeEEEEe
Q 018205 320 AVRGSERTEKEWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 320 ~~~g~~~t~~~~~~ll~~aGf~~~~~~~~ 348 (359)
....++.+++.+.||....+.++
T Consensus 179 ------~~~~~~~~~l~~~~~~~~~~~~v 201 (259)
T 3lpm_A 179 ------ERLLDIIDIMRKYRLEPKRIQFV 201 (259)
T ss_dssp ------TTHHHHHHHHHHTTEEEEEEEEE
T ss_pred ------HHHHHHHHHHHHCCCceEEEEEe
Confidence 02455777888899998887766
No 142
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=99.19 E-value=1e-10 Score=101.16 Aligned_cols=141 Identities=11% Similarity=0.088 Sum_probs=92.5
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHH-CCCCeEEEeeccc-cc----ccCCCCCCceEeeCCCCCC-----C-CCccEEEEc
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEA-FPGIKCTVLDLPH-VV----PKVPDTDNLKFIAGDMFQS-----I-PPADAFFFK 259 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~~~-~~----~~a~~~~~v~~~~~d~~~~-----~-p~~D~i~~~ 259 (359)
+.+..+|||+|||+|.++..+++. .|..+++++|++. ++ +.++...++.++.+|+..+ . ..||+|++.
T Consensus 74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d 153 (232)
T 3id6_C 74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVD 153 (232)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEec
Confidence 567799999999999999999887 4677999999954 53 3344456899999998542 1 249999987
Q ss_pred chhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcC
Q 018205 260 AIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAG 339 (359)
Q Consensus 260 ~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aG 339 (359)
... + ++...+++.+.+.|+| ||.+++....... |... +-.. ..++..+.|+++|
T Consensus 154 ~a~---~-~~~~il~~~~~~~Lkp---GG~lvisik~~~~--------------d~t~----~~~e-~~~~~~~~L~~~g 207 (232)
T 3id6_C 154 IAQ---P-DQTDIAIYNAKFFLKV---NGDMLLVIKARSI--------------DVTK----DPKE-IYKTEVEKLENSN 207 (232)
T ss_dssp CCC---T-THHHHHHHHHHHHEEE---EEEEEEEEC---------------------C----CSSS-STTHHHHHHHHTT
T ss_pred CCC---h-hHHHHHHHHHHHhCCC---CeEEEEEEccCCc--------------ccCC----CHHH-HHHHHHHHHHHCC
Confidence 543 2 2223345666779999 8998886322110 0000 0000 1133446778899
Q ss_pred CceeEEEEeCCc---eeEEEEe
Q 018205 340 FSHFKITPVYGI---KSLIEVY 358 (359)
Q Consensus 340 f~~~~~~~~~~~---~~vi~~~ 358 (359)
|++.+...+..+ +.++.++
T Consensus 208 f~~~~~~~l~p~~~~h~~v~~~ 229 (232)
T 3id6_C 208 FETIQIINLDPYDKDHAIVLSK 229 (232)
T ss_dssp EEEEEEEECTTTCSSCEEEEEE
T ss_pred CEEEEEeccCCCcCceEEEEEE
Confidence 999999988433 5555544
No 143
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A
Probab=99.19 E-value=1.5e-11 Score=113.57 Aligned_cols=107 Identities=17% Similarity=0.230 Sum_probs=84.8
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCC-------CCCceEeeCCCCC-CCC-C
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPD-------TDNLKFIAGDMFQ-SIP-P 252 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~d~~~-~~p-~ 252 (359)
..+++.+. ..+..+|||||||+|.++..+++. +..+++++|++++++.|++ .++++++.+|+.+ +.+ .
T Consensus 40 ~~i~~~l~--~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~ 116 (348)
T 2y1w_A 40 RAILQNHT--DFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQ 116 (348)
T ss_dssp HHHHHTGG--GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSC
T ss_pred HHHHhccc--cCCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCc
Confidence 45555554 446789999999999999998886 4569999999776665542 3689999999965 444 4
Q ss_pred ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 253 ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 253 ~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
||+|++..+++++..+.....+.+++++|+| ||.+++..
T Consensus 117 ~D~Ivs~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~ 155 (348)
T 2y1w_A 117 VDIIISEPMGYMLFNERMLESYLHAKKYLKP---SGNMFPTI 155 (348)
T ss_dssp EEEEEECCCBTTBTTTSHHHHHHHGGGGEEE---EEEEESCE
T ss_pred eeEEEEeCchhcCChHHHHHHHHHHHhhcCC---CeEEEEec
Confidence 9999999998888777777889999999999 88877543
No 144
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=99.19 E-value=4.6e-11 Score=103.55 Aligned_cols=129 Identities=9% Similarity=0.067 Sum_probs=98.5
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCCCCC---CccEEEEcch
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQSIP---PADAFFFKAI 261 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~~~p---~~D~i~~~~v 261 (359)
++..+|+|||||+|.++..+++..|..+++++|+++ +++.|++ .+++++..+|.++.++ .||+|++..+
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviagm 99 (244)
T 3gnl_A 20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGM 99 (244)
T ss_dssp CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeCC
Confidence 456899999999999999999998888999999954 8887762 4679999999987543 3999987655
Q ss_pred hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCc
Q 018205 262 FHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFS 341 (359)
Q Consensus 262 l~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~ 341 (359)
. -+-...+|....+.|++ ++.+++.- .. ..+..+++|.+.||.
T Consensus 100 G----g~lI~~IL~~~~~~L~~---~~~lIlq~-~~-----------------------------~~~~lr~~L~~~Gf~ 142 (244)
T 3gnl_A 100 G----GTLIRTILEEGAAKLAG---VTKLILQP-NI-----------------------------AAWQLREWSEQNNWL 142 (244)
T ss_dssp C----HHHHHHHHHHTGGGGTT---CCEEEEEE-SS-----------------------------CHHHHHHHHHHHTEE
T ss_pred c----hHHHHHHHHHHHHHhCC---CCEEEEEc-CC-----------------------------ChHHHHHHHHHCCCE
Confidence 3 24567799999999988 77766633 10 245678899999999
Q ss_pred eeEEEEe---CCceeEEEEe
Q 018205 342 HFKITPV---YGIKSLIEVY 358 (359)
Q Consensus 342 ~~~~~~~---~~~~~vi~~~ 358 (359)
+++-.-+ .-++.++.+.
T Consensus 143 i~~E~lv~e~~k~Yeii~~~ 162 (244)
T 3gnl_A 143 ITSEAILREDNKVYEIMVLA 162 (244)
T ss_dssp EEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEEECCEEEEEEEEE
Confidence 8665533 4456676664
No 145
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=99.18 E-value=1.7e-11 Score=105.50 Aligned_cols=98 Identities=11% Similarity=0.086 Sum_probs=75.6
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC------CCCCceEeeCCCCCC----CC--CccEEEEcc
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP------DTDNLKFIAGDMFQS----IP--PADAFFFKA 260 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~------~~~~v~~~~~d~~~~----~p--~~D~i~~~~ 260 (359)
...+|||||||+|.++..+++.+|+.+++|+|++. +++.|+ ...+++++.+|+.+. ++ .+|.|++.+
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 56799999999999999999999999999999954 777665 235799999997441 33 499999875
Q ss_pred hhccCCchHH------HHHHHHHHHhcccCCCCcEEEEEe
Q 018205 261 IFHAFVDEDC------LKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 261 vl~~~~~~~~------~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
.......... ..++++++++|+| ||.+++..
T Consensus 114 ~~p~~~~~~~~rr~~~~~~l~~~~r~Lkp---GG~l~i~t 150 (218)
T 3dxy_A 114 PDPWHKARHNKRRIVQVPFAELVKSKLQL---GGVFHMAT 150 (218)
T ss_dssp CCCCCSGGGGGGSSCSHHHHHHHHHHEEE---EEEEEEEE
T ss_pred CCCccchhhhhhhhhhHHHHHHHHHHcCC---CcEEEEEe
Confidence 4332221111 2499999999999 88888865
No 146
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=99.18 E-value=1.2e-10 Score=104.19 Aligned_cols=120 Identities=11% Similarity=0.070 Sum_probs=90.7
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC-------CCCceEeeCCCCCCC-C-CccEEEEcchh
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD-------TDNLKFIAGDMFQSI-P-PADAFFFKAIF 262 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~-------~~~v~~~~~d~~~~~-p-~~D~i~~~~vl 262 (359)
.+..+|||+|||+|.++..+++..+. +++++|++ .+++.|++ .++++++++|+.+.. + .||+|++....
T Consensus 124 ~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p~ 202 (278)
T 2frn_A 124 KPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVV 202 (278)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCS
T ss_pred CCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCch
Confidence 45789999999999999999998766 89999995 48877662 346899999997633 2 49999985331
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCce
Q 018205 263 HAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSH 342 (359)
Q Consensus 263 ~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~ 342 (359)
....+++++.++|+| ||.+++.+....... .....+++.+.++++||+.
T Consensus 203 ------~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~----------------------~~~~~~~i~~~~~~~G~~~ 251 (278)
T 2frn_A 203 ------RTHEFIPKALSIAKD---GAIIHYHNTVPEKLM----------------------PREPFETFKRITKEYGYDV 251 (278)
T ss_dssp ------SGGGGHHHHHHHEEE---EEEEEEEEEEEGGGT----------------------TTTTHHHHHHHHHHTTCEE
T ss_pred ------hHHHHHHHHHHHCCC---CeEEEEEEeeccccc----------------------cccHHHHHHHHHHHcCCee
Confidence 124589999999999 888888776532110 0124567889999999997
Q ss_pred eE
Q 018205 343 FK 344 (359)
Q Consensus 343 ~~ 344 (359)
..
T Consensus 252 ~~ 253 (278)
T 2frn_A 252 EK 253 (278)
T ss_dssp EE
T ss_pred EE
Confidence 66
No 147
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=99.17 E-value=5.6e-11 Score=101.94 Aligned_cols=98 Identities=16% Similarity=0.219 Sum_probs=75.3
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCC-C--CC--CccEEEEcch
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQ-S--IP--PADAFFFKAI 261 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~-~--~p--~~D~i~~~~v 261 (359)
+..+|||||||+|.++..+++.+|+.+++++|++. +++.|++ ..+++++.+|+.+ + ++ .+|.|++...
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~ 117 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 117 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence 46799999999999999999999999999999965 8877652 3579999999854 1 33 4899887543
Q ss_pred hccCCch------HHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 262 FHAFVDE------DCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 262 l~~~~~~------~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
..+.... ....+|+++.++|+| ||.+++..
T Consensus 118 ~p~~~~~~~~~rl~~~~~l~~~~~~Lkp---gG~l~~~t 153 (213)
T 2fca_A 118 DPWPKKRHEKRRLTYSHFLKKYEEVMGK---GGSIHFKT 153 (213)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTT---SCEEEEEE
T ss_pred CCCcCccccccccCcHHHHHHHHHHcCC---CCEEEEEe
Confidence 3211110 024699999999999 89888864
No 148
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=99.16 E-value=5.5e-11 Score=104.85 Aligned_cols=126 Identities=13% Similarity=0.172 Sum_probs=94.7
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHH-CCCCeEEEeecc-cccccCCC-------CCCceEeeCCCCCC-CC-
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEA-FPGIKCTVLDLP-HVVPKVPD-------TDNLKFIAGDMFQS-IP- 251 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~~-~~~~~a~~-------~~~v~~~~~d~~~~-~p- 251 (359)
.++..++ ..+..+|||+|||+|.++..+++. .|+.+++++|++ .+++.|++ .+++++..+|+.+. ++
T Consensus 87 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~ 164 (258)
T 2pwy_A 87 AMVTLLD--LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEE 164 (258)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCT
T ss_pred HHHHHcC--CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCC
Confidence 4555555 567789999999999999999998 678899999995 47776652 26899999999663 55
Q ss_pred -CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHH
Q 018205 252 -PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKE 330 (359)
Q Consensus 252 -~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~ 330 (359)
.||+|++ ++++. ..+++++.++|+| ||.+++..+... ...+
T Consensus 165 ~~~D~v~~-----~~~~~--~~~l~~~~~~L~~---gG~l~~~~~~~~----------------------------~~~~ 206 (258)
T 2pwy_A 165 AAYDGVAL-----DLMEP--WKVLEKAALALKP---DRFLVAYLPNIT----------------------------QVLE 206 (258)
T ss_dssp TCEEEEEE-----ESSCG--GGGHHHHHHHEEE---EEEEEEEESCHH----------------------------HHHH
T ss_pred CCcCEEEE-----CCcCH--HHHHHHHHHhCCC---CCEEEEEeCCHH----------------------------HHHH
Confidence 3999997 34444 3589999999999 899988763210 1234
Q ss_pred HHHHHHHcCCceeEEEEe
Q 018205 331 WEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 331 ~~~ll~~aGf~~~~~~~~ 348 (359)
+.+.++++||..+++...
T Consensus 207 ~~~~l~~~gf~~~~~~~~ 224 (258)
T 2pwy_A 207 LVRAAEAHPFRLERVLEV 224 (258)
T ss_dssp HHHHHTTTTEEEEEEEEE
T ss_pred HHHHHHHCCCceEEEEEe
Confidence 556677889987766653
No 149
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=99.15 E-value=7.1e-11 Score=102.58 Aligned_cols=147 Identities=14% Similarity=0.095 Sum_probs=88.4
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-CCCc--------eEee-CCCCCCC
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-TDNL--------KFIA-GDMFQSI 250 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-~~~v--------~~~~-~d~~~~~ 250 (359)
..+++.+. ...+..+|||||||+|.++..+++.. ..+++++|++. |++.|.. ..++ .+.. .|+. .
T Consensus 26 ~~~L~~~~-~~~~g~~VLDiGcGtG~~t~~la~~g-~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~--~ 101 (232)
T 3opn_A 26 EKALKEFH-LEINGKTCLDIGSSTGGFTDVMLQNG-AKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFE--Q 101 (232)
T ss_dssp HHHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHTT-CSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCC--S
T ss_pred HHHHHHcC-CCCCCCEEEEEccCCCHHHHHHHhcC-CCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcC--c
Confidence 34555555 12345799999999999999999873 24999999954 8887542 2333 2222 2221 1
Q ss_pred CCccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhh-hhhhcCCcccCHH
Q 018205 251 PPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDML-MMVAVRGSERTEK 329 (359)
Q Consensus 251 p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~t~~ 329 (359)
+.+|.+.+..++..+ ..+|++++++|+| ||.+++.. .+. +.......... ..........+.+
T Consensus 102 ~~~d~~~~D~v~~~l-----~~~l~~i~rvLkp---gG~lv~~~--~p~------~e~~~~~~~~~G~~~d~~~~~~~~~ 165 (232)
T 3opn_A 102 GRPSFTSIDVSFISL-----DLILPPLYEILEK---NGEVAALI--KPQ------FEAGREQVGKNGIIRDPKVHQMTIE 165 (232)
T ss_dssp CCCSEEEECCSSSCG-----GGTHHHHHHHSCT---TCEEEEEE--CHH------HHSCHHHHC-CCCCCCHHHHHHHHH
T ss_pred CCCCEEEEEEEhhhH-----HHHHHHHHHhccC---CCEEEEEE--Ccc------cccCHHHhCcCCeecCcchhHHHHH
Confidence 114555554444443 4599999999999 89888843 110 10000000000 0000001224788
Q ss_pred HHHHHHHHcCCceeEEEEe
Q 018205 330 EWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 330 ~~~~ll~~aGf~~~~~~~~ 348 (359)
++.++++++||++..+...
T Consensus 166 ~l~~~l~~aGf~v~~~~~~ 184 (232)
T 3opn_A 166 KVLKTATQLGFSVKGLTFS 184 (232)
T ss_dssp HHHHHHHHHTEEEEEEEEC
T ss_pred HHHHHHHHCCCEEEEEEEc
Confidence 9999999999999888765
No 150
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}
Probab=99.14 E-value=2.9e-11 Score=116.00 Aligned_cols=105 Identities=16% Similarity=0.233 Sum_probs=84.9
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCC-------CCCceEeeCCCCC-CCC-C
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPD-------TDNLKFIAGDMFQ-SIP-P 252 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~d~~~-~~p-~ 252 (359)
..+++.+. ..+..+|||||||+|.++..+++ .+..+++++|++.+++.|++ .++++++.+|+.+ +.+ .
T Consensus 148 ~~il~~l~--~~~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~ 224 (480)
T 3b3j_A 148 RAILQNHT--DFKDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQ 224 (480)
T ss_dssp HHHHHTGG--GTTTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSC
T ss_pred HHHHHhhh--hcCCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccCCC
Confidence 45566554 44568999999999999998887 56779999999767666652 3789999999976 455 4
Q ss_pred ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEE
Q 018205 253 ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 253 ~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli 292 (359)
||+|++..+++++.+++....+.+++++|+| ||.+++
T Consensus 225 fD~Ivs~~~~~~~~~e~~~~~l~~~~~~Lkp---gG~li~ 261 (480)
T 3b3j_A 225 VDIIISEPMGYMLFNERMLESYLHAKKYLKP---SGNMFP 261 (480)
T ss_dssp EEEEECCCCHHHHTCHHHHHHHHHGGGGEEE---EEEEES
T ss_pred eEEEEEeCchHhcCcHHHHHHHHHHHHhcCC---CCEEEE
Confidence 9999999888888877777888899999999 787774
No 151
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=99.13 E-value=1.1e-10 Score=109.90 Aligned_cols=111 Identities=15% Similarity=0.215 Sum_probs=85.0
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccC-------C------C--CCCceEeeCC
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKV-------P------D--TDNLKFIAGD 245 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a-------~------~--~~~v~~~~~d 245 (359)
..+++.+. ..+..+|||||||+|.++..+++.++..+++|+|++. +++.| + . ..+++++.+|
T Consensus 232 ~~ml~~l~--l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD 309 (433)
T 1u2z_A 232 SDVYQQCQ--LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKK 309 (433)
T ss_dssp HHHHHHTT--CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESS
T ss_pred HHHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcC
Confidence 34555555 5677899999999999999999988777899999954 76666 3 1 3689999875
Q ss_pred CCC-C------CCCccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCC
Q 018205 246 MFQ-S------IPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEK 300 (359)
Q Consensus 246 ~~~-~------~p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~ 300 (359)
.+. . ...||+|+++++++ . ++....|+++.+.|+| ||.+++.+...+..
T Consensus 310 ~~~~~~~~~~~~~~FDvIvvn~~l~-~--~d~~~~L~el~r~LKp---GG~lVi~d~f~p~~ 365 (433)
T 1u2z_A 310 SFVDNNRVAELIPQCDVILVNNFLF-D--EDLNKKVEKILQTAKV---GCKIISLKSLRSLT 365 (433)
T ss_dssp CSTTCHHHHHHGGGCSEEEECCTTC-C--HHHHHHHHHHHTTCCT---TCEEEESSCSSCTT
T ss_pred ccccccccccccCCCCEEEEeCccc-c--ccHHHHHHHHHHhCCC---CeEEEEeeccCCcc
Confidence 432 1 23599999987773 2 4556789999999999 99999987665543
No 152
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=99.13 E-value=8e-11 Score=105.18 Aligned_cols=126 Identities=16% Similarity=0.250 Sum_probs=93.5
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHH-CCCCeEEEeecc-cccccCCC-------CCCceEeeCCCCCCCC--
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEA-FPGIKCTVLDLP-HVVPKVPD-------TDNLKFIAGDMFQSIP-- 251 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~~-~~~~~a~~-------~~~v~~~~~d~~~~~p-- 251 (359)
.++..+. +.+..+|||+|||+|.++..+++. .|..+++++|++ .+++.|++ .+++++..+|+.+.++
T Consensus 103 ~i~~~~~--~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 180 (277)
T 1o54_A 103 FIAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEK 180 (277)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCC
T ss_pred HHHHHhC--CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccCC
Confidence 4555555 566789999999999999999999 678999999995 47777662 2579999999966554
Q ss_pred CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHH
Q 018205 252 PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEW 331 (359)
Q Consensus 252 ~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~ 331 (359)
.||+|++. .++. ..+++++.++|+| ||.+++...... ...++
T Consensus 181 ~~D~V~~~-----~~~~--~~~l~~~~~~L~p---gG~l~~~~~~~~----------------------------~~~~~ 222 (277)
T 1o54_A 181 DVDALFLD-----VPDP--WNYIDKCWEALKG---GGRFATVCPTTN----------------------------QVQET 222 (277)
T ss_dssp SEEEEEEC-----CSCG--GGTHHHHHHHEEE---EEEEEEEESSHH----------------------------HHHHH
T ss_pred ccCEEEEC-----CcCH--HHHHHHHHHHcCC---CCEEEEEeCCHH----------------------------HHHHH
Confidence 49999982 3433 3589999999999 888888663210 12345
Q ss_pred HHHHHHcCCceeEEEEe
Q 018205 332 EKLFLDAGFSHFKITPV 348 (359)
Q Consensus 332 ~~ll~~aGf~~~~~~~~ 348 (359)
.+.|+++||..+++...
T Consensus 223 ~~~l~~~gf~~~~~~~~ 239 (277)
T 1o54_A 223 LKKLQELPFIRIEVWES 239 (277)
T ss_dssp HHHHHHSSEEEEEEECC
T ss_pred HHHHHHCCCceeEEEEE
Confidence 56677788887766543
No 153
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=99.12 E-value=2.5e-10 Score=99.43 Aligned_cols=94 Identities=16% Similarity=0.192 Sum_probs=75.7
Q ss_pred CCCeEEEeCCCcchHHHHHHHH----CCCCeEEEeecc-cccccCCC-CCCceEeeCCCCCC--CC-----CccEEEEcc
Q 018205 194 GLGSLVDVGGGTGSFARIISEA----FPGIKCTVLDLP-HVVPKVPD-TDNLKFIAGDMFQS--IP-----PADAFFFKA 260 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~----~p~~~~~~~D~~-~~~~~a~~-~~~v~~~~~d~~~~--~p-----~~D~i~~~~ 260 (359)
+..+|||||||+|..+..+++. .|+.+++++|++ .+++.|+. .++++++.+|+.+. ++ .||+|++..
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~ 160 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN 160 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECC
Confidence 3579999999999999999997 688999999995 58888763 46899999999652 22 399999765
Q ss_pred hhccCCchHHHHHHHHHHH-hcccCCCCcEEEEEee
Q 018205 261 IFHAFVDEDCLKILKRCRE-AIASRGDRGKVIIIDI 295 (359)
Q Consensus 261 vl~~~~~~~~~~~L~~~~~-~L~p~~~gG~lli~~~ 295 (359)
. |. +...+|+++.+ .|+| ||.+++.+.
T Consensus 161 ~-~~----~~~~~l~~~~r~~Lkp---GG~lv~~d~ 188 (236)
T 2bm8_A 161 A-HA----NTFNIMKWAVDHLLEE---GDYFIIEDM 188 (236)
T ss_dssp S-CS----SHHHHHHHHHHHTCCT---TCEEEECSC
T ss_pred c-hH----hHHHHHHHHHHhhCCC---CCEEEEEeC
Confidence 4 42 34679999997 9999 898888664
No 154
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=99.12 E-value=7e-11 Score=103.87 Aligned_cols=100 Identities=13% Similarity=0.155 Sum_probs=79.5
Q ss_pred CCCeEEEeCCCcchHHHHHHHH--CCCCeEEEeeccc-ccccCCC---CC-------C----------------------
Q 018205 194 GLGSLVDVGGGTGSFARIISEA--FPGIKCTVLDLPH-VVPKVPD---TD-------N---------------------- 238 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~--~p~~~~~~~D~~~-~~~~a~~---~~-------~---------------------- 238 (359)
+..+|||+|||+|.++..+++. .++.+++++|++. +++.|+. .. +
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 130 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence 4679999999999999999998 7778999999954 8887762 12 2
Q ss_pred ---ce-------------EeeCCCCCCC------C--CccEEEEcchhccCCc-------hHHHHHHHHHHHhcccCCCC
Q 018205 239 ---LK-------------FIAGDMFQSI------P--PADAFFFKAIFHAFVD-------EDCLKILKRCREAIASRGDR 287 (359)
Q Consensus 239 ---v~-------------~~~~d~~~~~------p--~~D~i~~~~vl~~~~~-------~~~~~~L~~~~~~L~p~~~g 287 (359)
++ +..+|+++.. + .||+|+++..+++..+ +....++++++++|+| |
T Consensus 131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---g 207 (250)
T 1o9g_A 131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPA---H 207 (250)
T ss_dssp HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCT---T
T ss_pred hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCC---C
Confidence 67 9999997743 3 5999999877665543 5566899999999999 8
Q ss_pred cEEEEEeee
Q 018205 288 GKVIIIDIV 296 (359)
Q Consensus 288 G~lli~~~~ 296 (359)
|.++++...
T Consensus 208 G~l~~~~~~ 216 (250)
T 1o9g_A 208 AVIAVTDRS 216 (250)
T ss_dssp CEEEEEESS
T ss_pred cEEEEeCcc
Confidence 998885433
No 155
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=99.11 E-value=8.3e-11 Score=102.41 Aligned_cols=99 Identities=19% Similarity=0.227 Sum_probs=73.0
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC------------CCCCceEeeCCCCCC----CC--Cc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP------------DTDNLKFIAGDMFQS----IP--PA 253 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~------------~~~~v~~~~~d~~~~----~p--~~ 253 (359)
.+..+|||||||+|.++..+++.+|+.+++|+|++. +++.|+ ...+++++.+|+.+. ++ .+
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 456789999999999999999999999999999965 776442 246799999999652 33 38
Q ss_pred cEEEEcchhccCCc--hH----HHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 254 DAFFFKAIFHAFVD--ED----CLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 254 D~i~~~~vl~~~~~--~~----~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
|.|++...-.+... .. ...+|+++.++|+| ||.+++..
T Consensus 125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~Lkp---GG~l~~~t 168 (235)
T 3ckk_A 125 TKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRV---GGLVYTIT 168 (235)
T ss_dssp EEEEEESCC-----------CCCHHHHHHHHHHEEE---EEEEEEEE
T ss_pred eEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCC---CCEEEEEe
Confidence 99887543221110 00 13699999999999 88888765
No 156
>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A
Probab=99.11 E-value=8.7e-11 Score=97.46 Aligned_cols=114 Identities=10% Similarity=0.048 Sum_probs=84.9
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC--CCCceEeeCCCCC-CC---C--CccEEEEcchh
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD--TDNLKFIAGDMFQ-SI---P--PADAFFFKAIF 262 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~--~~~v~~~~~d~~~-~~---p--~~D~i~~~~vl 262 (359)
..+..+|||||||. +.+|++. |++.|++ ..++++..+|+.+ +. + .||+|++++++
T Consensus 10 ~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l 73 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVP 73 (176)
T ss_dssp CCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCST
T ss_pred CCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChh
Confidence 56678999999996 2388854 8887763 2358999999854 33 3 39999999999
Q ss_pred ccC-CchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCc
Q 018205 263 HAF-VDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFS 341 (359)
Q Consensus 263 ~~~-~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~ 341 (359)
|++ ++. .++|++++++|+| ||.+++.++...... .....++.++|.++|+++||
T Consensus 74 ~~~~~~~--~~~l~~~~r~Lkp---gG~l~~~~~~~~~~~-------------------~~~~~~~~~~~~~~l~~aGf- 128 (176)
T 2ld4_A 74 GSTTLHS--AEILAEIARILRP---GGCLFLKEPVETAVD-------------------NNSKVKTASKLCSALTLSGL- 128 (176)
T ss_dssp TCCCCCC--HHHHHHHHHHEEE---EEEEEEEEEEESSSC-------------------SSSSSCCHHHHHHHHHHTTC-
T ss_pred hhcccCH--HHHHHHHHHHCCC---CEEEEEEcccccccc-------------------cccccCCHHHHHHHHHHCCC-
Confidence 998 665 5699999999999 899999655432211 01233588999999999999
Q ss_pred eeEEEE
Q 018205 342 HFKITP 347 (359)
Q Consensus 342 ~~~~~~ 347 (359)
+. +..
T Consensus 129 i~-~~~ 133 (176)
T 2ld4_A 129 VE-VKE 133 (176)
T ss_dssp EE-EEE
T ss_pred cE-eec
Confidence 44 444
No 157
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=99.11 E-value=1.6e-10 Score=106.21 Aligned_cols=103 Identities=19% Similarity=0.252 Sum_probs=77.8
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCC-------CCCceEeeCCCCC-CCC--C
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPD-------TDNLKFIAGDMFQ-SIP--P 252 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~d~~~-~~p--~ 252 (359)
.+.+.+. ..+..+|||||||+|.++..+++. +..+++++|++++++.|++ .++++++.+|+.+ ++| .
T Consensus 55 ~i~~~~~--~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 131 (340)
T 2fyt_A 55 FIYQNPH--IFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEK 131 (340)
T ss_dssp HHHHCGG--GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSC
T ss_pred HHHhhhh--hcCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCc
Confidence 3444433 456789999999999999999887 3458999999777776652 2789999999965 455 4
Q ss_pred ccEEEEcchhccC-CchHHHHHHHHHHHhcccCCCCcEEE
Q 018205 253 ADAFFFKAIFHAF-VDEDCLKILKRCREAIASRGDRGKVI 291 (359)
Q Consensus 253 ~D~i~~~~vl~~~-~~~~~~~~L~~~~~~L~p~~~gG~ll 291 (359)
||+|++..+.+.+ .......+|+++.++|+| ||.++
T Consensus 132 ~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~Lkp---gG~li 168 (340)
T 2fyt_A 132 VDVIISEWMGYFLLFESMLDSVLYAKNKYLAK---GGSVY 168 (340)
T ss_dssp EEEEEECCCBTTBTTTCHHHHHHHHHHHHEEE---EEEEE
T ss_pred EEEEEEcCchhhccCHHHHHHHHHHHHhhcCC---CcEEE
Confidence 9999987743322 223456799999999999 88776
No 158
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=99.11 E-value=7e-11 Score=109.09 Aligned_cols=96 Identities=16% Similarity=0.190 Sum_probs=76.0
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCC-------CCCceEeeCCCCC-CCC--CccEEEEcchh
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPD-------TDNLKFIAGDMFQ-SIP--PADAFFFKAIF 262 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~d~~~-~~p--~~D~i~~~~vl 262 (359)
.+..+|||||||+|.++..+++. +..+++++|++++++.|++ .++++++.+|+.+ ++| .||+|++..+.
T Consensus 65 ~~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~ 143 (349)
T 3q7e_A 65 FKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG 143 (349)
T ss_dssp HTTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred CCCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccc
Confidence 45789999999999999999987 5569999999877776652 4569999999966 455 49999997765
Q ss_pred ccC-CchHHHHHHHHHHHhcccCCCCcEEEE
Q 018205 263 HAF-VDEDCLKILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 263 ~~~-~~~~~~~~L~~~~~~L~p~~~gG~lli 292 (359)
+.+ ..+....+++.+.++|+| ||.++.
T Consensus 144 ~~l~~~~~~~~~l~~~~r~Lkp---gG~li~ 171 (349)
T 3q7e_A 144 YCLFYESMLNTVLHARDKWLAP---DGLIFP 171 (349)
T ss_dssp BTBTBTCCHHHHHHHHHHHEEE---EEEEES
T ss_pred ccccCchhHHHHHHHHHHhCCC---CCEEcc
Confidence 443 233456799999999999 787763
No 159
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=99.09 E-value=1.7e-10 Score=98.42 Aligned_cols=99 Identities=13% Similarity=0.134 Sum_probs=79.0
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCCCCC---C
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQSIP---P 252 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~~~p---~ 252 (359)
.+++.+. ..+..+|||||||+|.++..+++. ..+++++|++. +++.|++ ..++++..+|+.+..+ .
T Consensus 68 ~~~~~l~--~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 143 (210)
T 3lbf_A 68 RMTELLE--LTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAP 143 (210)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred HHHHhcC--CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCC
Confidence 4455555 567789999999999999999998 67999999954 8877662 3579999999966332 4
Q ss_pred ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 253 ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 253 ~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
||+|++..+++++++ .+.+.|+| ||.+++.-..
T Consensus 144 ~D~i~~~~~~~~~~~--------~~~~~L~p---gG~lv~~~~~ 176 (210)
T 3lbf_A 144 FDAIIVTAAPPEIPT--------ALMTQLDE---GGILVLPVGE 176 (210)
T ss_dssp EEEEEESSBCSSCCT--------HHHHTEEE---EEEEEEEECS
T ss_pred ccEEEEccchhhhhH--------HHHHhccc---CcEEEEEEcC
Confidence 999999999998875 47889999 8888886544
No 160
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}
Probab=99.09 E-value=1.2e-10 Score=108.67 Aligned_cols=101 Identities=14% Similarity=0.131 Sum_probs=79.3
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCC-------CCCceEeeCCCCC-CCC-CccEEEEcchh
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPD-------TDNLKFIAGDMFQ-SIP-PADAFFFKAIF 262 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~d~~~-~~p-~~D~i~~~~vl 262 (359)
..+..+|||||||+|.++..+++.. ..+++++|++.+++.|++ .++++++.+|+.+ +.+ .||+|++..+.
T Consensus 61 ~~~~~~VLDlGcGtG~ls~~la~~g-~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~~~~~ 139 (376)
T 3r0q_C 61 HFEGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMG 139 (376)
T ss_dssp TTTTCEEEEESCTTTHHHHHHHHTT-CSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEECCCB
T ss_pred cCCCCEEEEeccCcCHHHHHHHhcC-CCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEEcChh
Confidence 4567899999999999999999873 338999999877776652 4679999999965 444 59999997766
Q ss_pred ccCCc-hHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 263 HAFVD-EDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 263 ~~~~~-~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
|.... .....+++.++++|+| ||.+++.+..
T Consensus 140 ~~l~~e~~~~~~l~~~~~~Lkp---gG~li~~~~~ 171 (376)
T 3r0q_C 140 YFLLRESMFDSVISARDRWLKP---TGVMYPSHAR 171 (376)
T ss_dssp TTBTTTCTHHHHHHHHHHHEEE---EEEEESSEEE
T ss_pred hcccchHHHHHHHHHHHhhCCC---CeEEEEecCe
Confidence 65542 3456799999999999 8888765544
No 161
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=99.09 E-value=1.9e-10 Score=98.60 Aligned_cols=100 Identities=16% Similarity=0.176 Sum_probs=79.7
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeeccc-ccccCCC------CCCceEeeCCCCCCCC---
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQSIP--- 251 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~~~p--- 251 (359)
.+++.+. ..+..+|||||||+|.++..+++.. |+.+++++|++. +++.+++ ..++++..+|+....+
T Consensus 68 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 145 (215)
T 2yxe_A 68 MMCELLD--LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLA 145 (215)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGC
T ss_pred HHHHhhC--CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCC
Confidence 4445454 5567899999999999999999987 668999999954 7777663 3569999999855443
Q ss_pred CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 018205 252 PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDI 295 (359)
Q Consensus 252 ~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~ 295 (359)
.||+|++..++++++ +++.++|+| ||.+++...
T Consensus 146 ~fD~v~~~~~~~~~~--------~~~~~~L~p---gG~lv~~~~ 178 (215)
T 2yxe_A 146 PYDRIYTTAAGPKIP--------EPLIRQLKD---GGKLLMPVG 178 (215)
T ss_dssp CEEEEEESSBBSSCC--------HHHHHTEEE---EEEEEEEES
T ss_pred CeeEEEECCchHHHH--------HHHHHHcCC---CcEEEEEEC
Confidence 499999999999886 377899999 888888654
No 162
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=99.08 E-value=6.6e-10 Score=93.50 Aligned_cols=103 Identities=13% Similarity=0.317 Sum_probs=75.5
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCCCCCceEeeCCCCCCC-----------
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPDTDNLKFIAGDMFQSI----------- 250 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~----------- 250 (359)
..+.+.+. .+.+..+|||+|||+|.++..++++ +.+++++|++++. ...+++++++|+.+..
T Consensus 14 ~ei~~~~~-~~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~~----~~~~v~~~~~D~~~~~~~~~~~~~~~~ 86 (191)
T 3dou_A 14 EFLLDRYR-VVRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEME----EIAGVRFIRCDIFKETIFDDIDRALRE 86 (191)
T ss_dssp HHHHHHHC-CSCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCCC----CCTTCEEEECCTTSSSHHHHHHHHHHH
T ss_pred HHHHHHcC-CCCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEeccccc----cCCCeEEEEccccCHHHHHHHHHHhhc
Confidence 45566665 3466789999999999999999988 7799999997642 2358999999996531
Q ss_pred ---CCccEEEEcchhccCC---------chHHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 251 ---PPADAFFFKAIFHAFV---------DEDCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 251 ---p~~D~i~~~~vl~~~~---------~~~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
..||+|++........ .+....+|+.+.++|+| ||.+++..
T Consensus 87 ~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~Lkp---GG~lv~k~ 139 (191)
T 3dou_A 87 EGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRN---GGNVLLKQ 139 (191)
T ss_dssp HTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred ccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccC---CCEEEEEE
Confidence 3699999854321111 12235689999999999 88877644
No 163
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=99.08 E-value=1.1e-10 Score=99.26 Aligned_cols=91 Identities=19% Similarity=0.237 Sum_probs=73.4
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCCCCC--CccEEEEcchhcc
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQSIP--PADAFFFKAIFHA 264 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~~~p--~~D~i~~~~vl~~ 264 (359)
+..+|||+|||+|.++..+++.+|+.+++++|++. +++.++. ..++++..+|+.+..+ .||+|++..+ +
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~-~- 142 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAF-A- 142 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCS-S-
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEecc-C-
Confidence 36799999999999999999999999999999954 7776652 2359999999966332 4999997542 2
Q ss_pred CCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 018205 265 FVDEDCLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 265 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
....+++++.++|+| ||.+++.
T Consensus 143 ----~~~~~l~~~~~~L~~---gG~l~~~ 164 (207)
T 1jsx_A 143 ----SLNDMVSWCHHLPGE---QGRFYAL 164 (207)
T ss_dssp ----SHHHHHHHHTTSEEE---EEEEEEE
T ss_pred ----CHHHHHHHHHHhcCC---CcEEEEE
Confidence 235699999999999 8888775
No 164
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}
Probab=99.08 E-value=7.1e-10 Score=98.11 Aligned_cols=96 Identities=13% Similarity=0.099 Sum_probs=70.9
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCC--CC------CceEe--eCCCCC-CCCCccEEEEcc
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPD--TD------NLKFI--AGDMFQ-SIPPADAFFFKA 260 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~--~~------~v~~~--~~d~~~-~~p~~D~i~~~~ 260 (359)
+.+..+|||||||+|.++..+++. .+++++|++.++..+.+ .. ++.++ .+|+.+ +...||+|++..
T Consensus 72 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~V~sd~ 148 (265)
T 2oxt_A 72 VELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLPVERTDVIMCDV 148 (265)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCCCCCCcEEEEeC
Confidence 456789999999999999999887 58999999776444332 11 68999 999965 222499999987
Q ss_pred hhccCCchH-----HHHHHHHHHHhcccCCCCc--EEEEEe
Q 018205 261 IFHAFVDED-----CLKILKRCREAIASRGDRG--KVIIID 294 (359)
Q Consensus 261 vl~~~~~~~-----~~~~L~~~~~~L~p~~~gG--~lli~~ 294 (359)
. +...+.. ...+|+.+.++|+| || .+++-.
T Consensus 149 ~-~~~~~~~~d~~~~l~~L~~~~r~Lkp---GG~~~fv~kv 185 (265)
T 2oxt_A 149 G-ESSPKWSVESERTIKILELLEKWKVK---NPSADFVVKV 185 (265)
T ss_dssp C-CCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCEEEEEE
T ss_pred c-ccCCccchhHHHHHHHHHHHHHHhcc---CCCeEEEEEe
Confidence 6 4443321 12488999999999 88 777744
No 165
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=99.08 E-value=1.7e-10 Score=102.11 Aligned_cols=99 Identities=10% Similarity=0.225 Sum_probs=74.9
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC---C-------CCceEeeCCCCCC--------CC-
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD---T-------DNLKFIAGDMFQS--------IP- 251 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~---~-------~~v~~~~~d~~~~--------~p- 251 (359)
..+..+|||+|||+|.++..+++++|+.+++++|++ .+++.|++ . ++++++.+|+.+. ++
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 113 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPD 113 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence 445679999999999999999999999999999995 47766541 1 3689999999654 22
Q ss_pred -CccEEEEcchhcc----------------CCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 018205 252 -PADAFFFKAIFHA----------------FVDEDCLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 252 -~~D~i~~~~vl~~----------------~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
.||+|+++--++. ........+++.+.++|+| ||.++++
T Consensus 114 ~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~ 169 (260)
T 2ozv_A 114 EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVS---GGQLSLI 169 (260)
T ss_dssp TCEEEEEECCCC---------------------CCHHHHHHHHHHHEEE---EEEEEEE
T ss_pred CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCC---CCEEEEE
Confidence 4999999732221 1222356799999999999 8888874
No 166
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=99.07 E-value=2.7e-10 Score=95.61 Aligned_cols=100 Identities=9% Similarity=0.049 Sum_probs=78.3
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC------CCCceEeeCCCCCC---C--CCccEEEEcc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD------TDNLKFIAGDMFQS---I--PPADAFFFKA 260 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~------~~~v~~~~~d~~~~---~--p~~D~i~~~~ 260 (359)
.+..+|||+|||+|.++..+++. +..+++++|++ .+++.|++ .++++++++|+.+. . ..||+|++..
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~ 121 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADP 121 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECC
Confidence 35689999999999999987774 45689999995 48887763 35899999998542 2 3599999988
Q ss_pred hhccCCchHHHHHHHHHHH--hcccCCCCcEEEEEeeec
Q 018205 261 IFHAFVDEDCLKILKRCRE--AIASRGDRGKVIIIDIVI 297 (359)
Q Consensus 261 vl~~~~~~~~~~~L~~~~~--~L~p~~~gG~lli~~~~~ 297 (359)
.+++. .++..++++.+.+ +|+| ||.+++.....
T Consensus 122 p~~~~-~~~~~~~l~~~~~~~~L~p---gG~l~~~~~~~ 156 (189)
T 3p9n_A 122 PYNVD-SADVDAILAALGTNGWTRE---GTVAVVERATT 156 (189)
T ss_dssp CTTSC-HHHHHHHHHHHHHSSSCCT---TCEEEEEEETT
T ss_pred CCCcc-hhhHHHHHHHHHhcCccCC---CeEEEEEecCC
Confidence 76643 3556789999999 9999 88888865543
No 167
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=99.07 E-value=3.7e-10 Score=97.63 Aligned_cols=136 Identities=10% Similarity=0.024 Sum_probs=97.2
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----CCCceEeeCCCCCCCC--CccEEEEcchhcc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----TDNLKFIAGDMFQSIP--PADAFFFKAIFHA 264 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----~~~v~~~~~d~~~~~p--~~D~i~~~~vl~~ 264 (359)
..+.+|||||||.|-++..++...|..+++++|+.+ +++.++. ..+.++...|.....| .||++++.-++|+
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~lkti~~ 210 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLLLKTLPC 210 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEETTCHHH
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHHHHHHHH
Confidence 457899999999999999999999999999999955 8887762 4567899999976433 4999999999999
Q ss_pred CCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCceeE
Q 018205 265 FVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFK 344 (359)
Q Consensus 265 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~ 344 (359)
+.+++....+ ++.+.|+| +|.++-++ ...-.+..+ .++- .-...|.+.+.+.|+. ++
T Consensus 211 Le~q~kg~g~-~ll~aL~~---~~vvVSfp-~ksl~Grs~-------gm~~----------~Y~~~~e~~~~~~g~~-~~ 267 (281)
T 3lcv_B 211 LETQQRGSGW-EVIDIVNS---PNIVVTFP-TKSLGQRSK-------GMFQ----------NYSQSFESQARERSCR-IQ 267 (281)
T ss_dssp HHHHSTTHHH-HHHHHSSC---SEEEEEEE-CC--------------CHHH----------HHHHHHHHHHHHHTCC-EE
T ss_pred hhhhhhHHHH-HHHHHhCC---CCEEEecc-chhhcCCCc-------chhh----------HHHHHHHHHHHhcCCc-ee
Confidence 9877655566 99999999 45444444 321111110 1111 1246788999999994 45
Q ss_pred EEEeCCc
Q 018205 345 ITPVYGI 351 (359)
Q Consensus 345 ~~~~~~~ 351 (359)
...+++-
T Consensus 268 ~~~~~nE 274 (281)
T 3lcv_B 268 RLEIGNE 274 (281)
T ss_dssp EEEETTE
T ss_pred eeeecCe
Confidence 5555443
No 168
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=99.07 E-value=8.6e-11 Score=103.24 Aligned_cols=98 Identities=15% Similarity=0.197 Sum_probs=77.3
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCC-CCeEEEeecc-cccccCCC-------CCCceEeeCCCCC---CC---CCccEEE
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFP-GIKCTVLDLP-HVVPKVPD-------TDNLKFIAGDMFQ---SI---PPADAFF 257 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~-~~~~~a~~-------~~~v~~~~~d~~~---~~---p~~D~i~ 257 (359)
.+..+|||||||+|..+..+++.+| +.+++++|++ .+++.|++ .++++++.+|+.+ .. ..||+|+
T Consensus 62 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~ 141 (248)
T 3tfw_A 62 TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIF 141 (248)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEE
T ss_pred cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEE
Confidence 4578999999999999999999988 8899999995 48777662 3589999999844 22 1599999
Q ss_pred EcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecC
Q 018205 258 FKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVIN 298 (359)
Q Consensus 258 ~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~ 298 (359)
+... ......+++++.++|+| ||.+++.+....
T Consensus 142 ~d~~-----~~~~~~~l~~~~~~Lkp---GG~lv~~~~~~~ 174 (248)
T 3tfw_A 142 IDAD-----KPNNPHYLRWALRYSRP---GTLIIGDNVVRD 174 (248)
T ss_dssp ECSC-----GGGHHHHHHHHHHTCCT---TCEEEEECCSGG
T ss_pred ECCc-----hHHHHHHHHHHHHhcCC---CeEEEEeCCCcC
Confidence 8542 34456799999999999 887777655443
No 169
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=99.06 E-value=3.6e-10 Score=105.24 Aligned_cols=96 Identities=11% Similarity=0.188 Sum_probs=79.3
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----CCCceEeeCCCCCC-CC--CccEEEEcchhcc
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----TDNLKFIAGDMFQS-IP--PADAFFFKAIFHA 264 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----~~~v~~~~~d~~~~-~p--~~D~i~~~~vl~~ 264 (359)
+..+|||+|||+|.++..+++. +.+++++|++. +++.|++ ..+++++.+|+.+. .+ .||+|+++..+|+
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~ 310 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHV 310 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCT
T ss_pred CCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhh
Confidence 5679999999999999999987 67999999955 8877762 23589999999763 33 5999999999887
Q ss_pred ---CCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 265 ---FVDEDCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 265 ---~~~~~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
...+...+++++++++|+| ||.++++.
T Consensus 311 ~~~~~~~~~~~~l~~~~~~Lkp---GG~l~iv~ 340 (381)
T 3dmg_A 311 GGAVILDVAQAFVNVAAARLRP---GGVFFLVS 340 (381)
T ss_dssp TCSSCCHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred cccccHHHHHHHHHHHHHhcCc---CcEEEEEE
Confidence 3346677899999999999 88888864
No 170
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=99.05 E-value=9.8e-10 Score=92.53 Aligned_cols=104 Identities=20% Similarity=0.368 Sum_probs=75.8
Q ss_pred HHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCC---------CeEEEeecccccccCCCCCCceEe-eCCCCCC----
Q 018205 184 IVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPG---------IKCTVLDLPHVVPKVPDTDNLKFI-AGDMFQS---- 249 (359)
Q Consensus 184 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~---------~~~~~~D~~~~~~~a~~~~~v~~~-~~d~~~~---- 249 (359)
+...+. .+.+..+|||+|||+|.++..+++.++. .+++++|++++.. ..+++++ .+|+.+.
T Consensus 13 l~~~~~-~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~----~~~~~~~~~~d~~~~~~~~ 87 (196)
T 2nyu_A 13 VNERHQ-ILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFP----LEGATFLCPADVTDPRTSQ 87 (196)
T ss_dssp HHHHHC-CCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCC----CTTCEEECSCCTTSHHHHH
T ss_pred HHHhcC-CCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhccc----CCCCeEEEeccCCCHHHHH
Confidence 344444 2456789999999999999999999764 7999999977422 2468899 9998542
Q ss_pred -----CC--CccEEEEcchhccC----CchH-----HHHHHHHHHHhcccCCCCcEEEEEee
Q 018205 250 -----IP--PADAFFFKAIFHAF----VDED-----CLKILKRCREAIASRGDRGKVIIIDI 295 (359)
Q Consensus 250 -----~p--~~D~i~~~~vl~~~----~~~~-----~~~~L~~~~~~L~p~~~gG~lli~~~ 295 (359)
++ .||+|++...++.. .+.. ...+++++.++|+| ||.+++...
T Consensus 88 ~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lv~~~~ 146 (196)
T 2nyu_A 88 RILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQP---GGTFLCKTW 146 (196)
T ss_dssp HHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEEC
T ss_pred HHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcC---CCEEEEEec
Confidence 22 49999986554432 1221 14689999999999 888887654
No 171
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*
Probab=99.05 E-value=2.2e-10 Score=105.62 Aligned_cols=95 Identities=18% Similarity=0.166 Sum_probs=73.8
Q ss_pred CCCCeEEEeCCC------cchHHHHHHHH-CCCCeEEEeeccc-ccccCCCCCCceEeeCCCCC-CC--------CCccE
Q 018205 193 QGLGSLVDVGGG------TGSFARIISEA-FPGIKCTVLDLPH-VVPKVPDTDNLKFIAGDMFQ-SI--------PPADA 255 (359)
Q Consensus 193 ~~~~~vlDvG~G------~G~~~~~l~~~-~p~~~~~~~D~~~-~~~~a~~~~~v~~~~~d~~~-~~--------p~~D~ 255 (359)
.+..+||||||| +|..+..++++ +|+.+++++|+++ +.. ..++++++++|+.+ ++ ..||+
T Consensus 215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~~---~~~rI~fv~GDa~dlpf~~~l~~~d~sFDl 291 (419)
T 3sso_A 215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHV---DELRIRTIQGDQNDAEFLDRIARRYGPFDI 291 (419)
T ss_dssp TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGGG---CBTTEEEEECCTTCHHHHHHHHHHHCCEEE
T ss_pred CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHhh---cCCCcEEEEecccccchhhhhhcccCCccE
Confidence 456899999999 66666666655 6999999999965 532 45789999999965 22 35999
Q ss_pred EEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 256 FFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 256 i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
|++.. .|++ .+..+.|++++++||| ||.+++.|..
T Consensus 292 Visdg-sH~~--~d~~~aL~el~rvLKP---GGvlVi~Dl~ 326 (419)
T 3sso_A 292 VIDDG-SHIN--AHVRTSFAALFPHVRP---GGLYVIEDMW 326 (419)
T ss_dssp EEECS-CCCH--HHHHHHHHHHGGGEEE---EEEEEEECGG
T ss_pred EEECC-cccc--hhHHHHHHHHHHhcCC---CeEEEEEecc
Confidence 99864 5655 4456799999999999 8888887765
No 172
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=99.05 E-value=5.8e-10 Score=99.81 Aligned_cols=97 Identities=9% Similarity=0.112 Sum_probs=71.4
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-cc-ccccCCC---------C-------CCceEeeCCCCCC---C-
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PH-VVPKVPD---------T-------DNLKFIAGDMFQS---I- 250 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~-~~~~a~~---------~-------~~v~~~~~d~~~~---~- 250 (359)
.+..+|||||||+|.++..+++.. ..+++++|+ +. +++.|+. . +++++...|..+. +
T Consensus 78 ~~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 156 (281)
T 3bzb_A 78 IAGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQ 156 (281)
T ss_dssp TTTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHH
T ss_pred cCCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHH
Confidence 456799999999999999888763 348999999 44 7665541 0 3688886554321 1
Q ss_pred -----CCccEEEEcchhccCCchHHHHHHHHHHHhcc---cCCCCcEEEEE
Q 018205 251 -----PPADAFFFKAIFHAFVDEDCLKILKRCREAIA---SRGDRGKVIII 293 (359)
Q Consensus 251 -----p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~---p~~~gG~lli~ 293 (359)
..||+|+++.++++.+ ....+++.+.++|+ | ++||.++++
T Consensus 157 ~~~~~~~fD~Ii~~dvl~~~~--~~~~ll~~l~~~Lk~~~p-~~gG~l~v~ 204 (281)
T 3bzb_A 157 RCTGLQRFQVVLLADLLSFHQ--AHDALLRSVKMLLALPAN-DPTAVALVT 204 (281)
T ss_dssp HHHSCSSBSEEEEESCCSCGG--GHHHHHHHHHHHBCCTTT-CTTCEEEEE
T ss_pred hhccCCCCCEEEEeCcccChH--HHHHHHHHHHHHhcccCC-CCCCEEEEE
Confidence 3599999999998864 44679999999999 6 336776663
No 173
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=99.05 E-value=1.9e-10 Score=100.69 Aligned_cols=98 Identities=17% Similarity=0.232 Sum_probs=77.6
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCC-CCeEEEeecc-cccccCCC-------CCCceEeeCCCCCC---C------CCcc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFP-GIKCTVLDLP-HVVPKVPD-------TDNLKFIAGDMFQS---I------PPAD 254 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~-~~~~~a~~-------~~~v~~~~~d~~~~---~------p~~D 254 (359)
.++.+|||||||+|..+..+++..| +.+++++|++ .+++.|++ .++++++.+|+.+. . ..||
T Consensus 59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD 138 (242)
T 3r3h_A 59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFD 138 (242)
T ss_dssp HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEE
T ss_pred cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEe
Confidence 3468999999999999999999886 7899999995 58888873 36899999998541 2 3599
Q ss_pred EEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecC
Q 018205 255 AFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVIN 298 (359)
Q Consensus 255 ~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~ 298 (359)
+|++... ......+++++.++|+| ||.+++-+....
T Consensus 139 ~V~~d~~-----~~~~~~~l~~~~~~Lkp---GG~lv~d~~~~~ 174 (242)
T 3r3h_A 139 FIFIDAD-----KTNYLNYYELALKLVTP---KGLIAIDNIFWD 174 (242)
T ss_dssp EEEEESC-----GGGHHHHHHHHHHHEEE---EEEEEEECSSSS
T ss_pred EEEEcCC-----hHHhHHHHHHHHHhcCC---CeEEEEECCccC
Confidence 9998653 34456799999999999 777777655543
No 174
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*
Probab=99.05 E-value=7.2e-10 Score=98.61 Aligned_cols=96 Identities=15% Similarity=0.091 Sum_probs=70.8
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCC--CC------CceEe--eCCCCC-CCCCccEEEEcc
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPD--TD------NLKFI--AGDMFQ-SIPPADAFFFKA 260 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~--~~------~v~~~--~~d~~~-~~p~~D~i~~~~ 260 (359)
+.+..+|||+|||+|.++..++++ .+++++|++.++..+.+ .. ++.++ .+|+.+ +...||+|++..
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~Vvsd~ 156 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKMEPFQADTVLCDI 156 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCCCCCCSEEEECC
T ss_pred CCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCCCCCcCEEEECC
Confidence 456789999999999999999887 58999999776544432 11 68999 999954 222499999987
Q ss_pred hhccCCchH-----HHHHHHHHHHhcccCCCCc--EEEEEe
Q 018205 261 IFHAFVDED-----CLKILKRCREAIASRGDRG--KVIIID 294 (359)
Q Consensus 261 vl~~~~~~~-----~~~~L~~~~~~L~p~~~gG--~lli~~ 294 (359)
. +...... ...+|+.+.++|+| || .+++..
T Consensus 157 ~-~~~~~~~~d~~~~l~~L~~~~r~Lkp---GG~~~~v~~~ 193 (276)
T 2wa2_A 157 G-ESNPTAAVEASRTLTVLNVISRWLEY---NQGCGFCVKV 193 (276)
T ss_dssp C-CCCSCHHHHHHHHHHHHHHHHHHHHH---STTCEEEEEE
T ss_pred C-cCCCchhhhHHHHHHHHHHHHHHhcc---CCCcEEEEEe
Confidence 7 4433221 12479999999999 89 777743
No 175
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=99.05 E-value=6.6e-11 Score=102.88 Aligned_cols=97 Identities=13% Similarity=0.289 Sum_probs=76.5
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC-------CCCceEeeCCCCCCCC-----CccEEEEc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD-------TDNLKFIAGDMFQSIP-----PADAFFFK 259 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~-------~~~v~~~~~d~~~~~p-----~~D~i~~~ 259 (359)
.+..+|||||||+|..+..+++..|+.+++++|++ .+++.|++ .++++++.+|+.+..+ .||+|++.
T Consensus 70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~ 149 (232)
T 3ntv_A 70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFID 149 (232)
T ss_dssp HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEE
T ss_pred cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEc
Confidence 45789999999999999999998889999999995 48877762 3589999999966332 49999975
Q ss_pred chhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 018205 260 AIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVI 297 (359)
Q Consensus 260 ~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~ 297 (359)
.. ......+++++.++|+| ||.+++-+...
T Consensus 150 ~~-----~~~~~~~l~~~~~~Lkp---gG~lv~d~~~~ 179 (232)
T 3ntv_A 150 AA-----KAQSKKFFEIYTPLLKH---QGLVITDNVLY 179 (232)
T ss_dssp TT-----SSSHHHHHHHHGGGEEE---EEEEEEECTTG
T ss_pred Cc-----HHHHHHHHHHHHHhcCC---CeEEEEeeCCc
Confidence 43 23346799999999999 77776644433
No 176
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=99.04 E-value=3.6e-10 Score=97.91 Aligned_cols=99 Identities=18% Similarity=0.281 Sum_probs=78.2
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC----CCCceEeeCCCCCCCC---Ccc
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD----TDNLKFIAGDMFQSIP---PAD 254 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~----~~~v~~~~~d~~~~~p---~~D 254 (359)
.+++.+. ..+..+|||||||+|.++..+++.. .+++++|++. +++.+++ ..+++++.+|+.+..+ .||
T Consensus 61 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD 136 (231)
T 1vbf_A 61 FMLDELD--LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYD 136 (231)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEE
T ss_pred HHHHhcC--CCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCcc
Confidence 4455554 5567899999999999999999985 6899999954 7777652 2279999999965333 499
Q ss_pred EEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 255 AFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 255 ~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
+|++..++|++.+ ++.++|+| ||.+++....
T Consensus 137 ~v~~~~~~~~~~~--------~~~~~L~p---gG~l~~~~~~ 167 (231)
T 1vbf_A 137 RVVVWATAPTLLC--------KPYEQLKE---GGIMILPIGV 167 (231)
T ss_dssp EEEESSBBSSCCH--------HHHHTEEE---EEEEEEEECS
T ss_pred EEEECCcHHHHHH--------HHHHHcCC---CcEEEEEEcC
Confidence 9999999998863 57889999 8888887643
No 177
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=99.04 E-value=2.2e-10 Score=102.96 Aligned_cols=99 Identities=14% Similarity=0.205 Sum_probs=72.4
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----------CCCceEeeCCCCCCC----CCccEE
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----------TDNLKFIAGDMFQSI----PPADAF 256 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----------~~~v~~~~~d~~~~~----p~~D~i 256 (359)
+++.+|||||||+|.++..+++..+..+++++|+++ +++.|++ .++++++.+|..+.. ..||+|
T Consensus 82 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~V~~VDid~~vi~~ar~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fDvI 161 (294)
T 3adn_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp TTCCEEEEESCTTCHHHHHHHTCTTCCEEEEECSCTTHHHHHHHHCHHHHSSCTTCTTCCEECSCSCC---CCCCCEEEE
T ss_pred CCCCEEEEEeCChhHHHHHHHhCCCCCEEEEEECCHHHHHHHHHhhhhcccccccCCceEEEEChHHHHHhhcCCCccEE
Confidence 356899999999999999999987778999999954 8876652 458999999986532 249999
Q ss_pred EEcchhccCCchHH--HHHHHHHHHhcccCCCCcEEEEEe
Q 018205 257 FFKAIFHAFVDEDC--LKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 257 ~~~~vl~~~~~~~~--~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
++....+..+.... ..+++.++++|+| ||.+++..
T Consensus 162 i~D~~~p~~~~~~l~~~~f~~~~~~~Lkp---gG~lv~~~ 198 (294)
T 3adn_A 162 ISDCTDPIGPGESLFTSAFYEGCKRCLNP---GGIFVAQN 198 (294)
T ss_dssp EECC----------CCHHHHHHHHHTEEE---EEEEEEEE
T ss_pred EECCCCccCcchhccHHHHHHHHHHhcCC---CCEEEEec
Confidence 99554332222222 5699999999999 78777654
No 178
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=99.03 E-value=2.9e-10 Score=101.84 Aligned_cols=94 Identities=15% Similarity=0.249 Sum_probs=73.1
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCCCCC-Cc---cEEEEc--
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQSIP-PA---DAFFFK-- 259 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~~~p-~~---D~i~~~-- 259 (359)
+..+|||+|||+|.++..+++. |+.+++++|++. +++.|+. .++++++.+|+++..+ .| |+|+++
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~~~D~IvsnPP 201 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPP 201 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCC
T ss_pred CCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccCCCCEEEEcCC
Confidence 4579999999999999999999 999999999954 8887762 3469999999977544 48 999996
Q ss_pred ----------chhccCCc------hHHHHHHHHHH-HhcccCCCCcEEEE
Q 018205 260 ----------AIFHAFVD------EDCLKILKRCR-EAIASRGDRGKVII 292 (359)
Q Consensus 260 ----------~vl~~~~~------~~~~~~L~~~~-~~L~p~~~gG~lli 292 (359)
.+. +.+. .+-..+++++. +.|+| ||.+++
T Consensus 202 yi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~p---gG~l~~ 247 (284)
T 1nv8_A 202 YVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTS---GKIVLM 247 (284)
T ss_dssp CBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCT---TCEEEE
T ss_pred CCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCC---CCEEEE
Confidence 222 2211 11126899999 99999 887776
No 179
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=99.03 E-value=1.8e-10 Score=101.09 Aligned_cols=94 Identities=22% Similarity=0.341 Sum_probs=71.7
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC--------------CCCCceEeeCCCCCCCC------
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP--------------DTDNLKFIAGDMFQSIP------ 251 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~--------------~~~~v~~~~~d~~~~~p------ 251 (359)
++..+|||||||+|.++..+++.+|+.+++++|++. +++.++ ...+++++.+|+.+.++
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~ 127 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKG 127 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTT
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccc
Confidence 456899999999999999999999999999999965 776553 22579999999865322
Q ss_pred CccEEEEcchhccCCchHH-----------HHHHHHHHHhcccCCCCcEEEEEe
Q 018205 252 PADAFFFKAIFHAFVDEDC-----------LKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 252 ~~D~i~~~~vl~~~~~~~~-----------~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
.+|.|++. ++++.. ..+++++.++|+| ||.+++..
T Consensus 128 ~~d~v~~~-----~p~p~~k~~~~~~r~~~~~~l~~~~~~Lkp---gG~l~~~t 173 (246)
T 2vdv_E 128 QLSKMFFC-----FPDPHFKQRKHKARIITNTLLSEYAYVLKE---GGVVYTIT 173 (246)
T ss_dssp CEEEEEEE-----SCCCC------CSSCCCHHHHHHHHHHEEE---EEEEEEEE
T ss_pred ccCEEEEE-----CCCcccccchhHHhhccHHHHHHHHHHcCC---CCEEEEEe
Confidence 37777643 232211 3699999999999 88888843
No 180
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=99.02 E-value=1.2e-10 Score=100.44 Aligned_cols=97 Identities=16% Similarity=0.201 Sum_probs=76.3
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCC-CCeEEEeecc-cccccCCC-------CCCceEeeCCCCCC---C-----CCccE
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFP-GIKCTVLDLP-HVVPKVPD-------TDNLKFIAGDMFQS---I-----PPADA 255 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~-~~~~~a~~-------~~~v~~~~~d~~~~---~-----p~~D~ 255 (359)
.+..+|||||||+|..+..+++.+| +.+++++|++ .+++.|++ .++++++.+|+.+. . ..||+
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~ 136 (223)
T 3duw_A 57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDF 136 (223)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSE
T ss_pred hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCE
Confidence 4578999999999999999999988 7899999994 47776652 45799999998542 1 34999
Q ss_pred EEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 018205 256 FFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVI 297 (359)
Q Consensus 256 i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~ 297 (359)
|++.... +....+++++.++|+| ||.+++.+...
T Consensus 137 v~~d~~~-----~~~~~~l~~~~~~L~p---gG~lv~~~~~~ 170 (223)
T 3duw_A 137 IFIDADK-----QNNPAYFEWALKLSRP---GTVIIGDNVVR 170 (223)
T ss_dssp EEECSCG-----GGHHHHHHHHHHTCCT---TCEEEEESCSG
T ss_pred EEEcCCc-----HHHHHHHHHHHHhcCC---CcEEEEeCCCc
Confidence 9986542 3446799999999999 88776655544
No 181
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=99.02 E-value=4.1e-10 Score=99.95 Aligned_cols=93 Identities=16% Similarity=0.224 Sum_probs=76.2
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-CCCceEeeCCCCC-CCC--CccEEEEcchhccCCc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-TDNLKFIAGDMFQ-SIP--PADAFFFKAIFHAFVD 267 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-~~~v~~~~~d~~~-~~p--~~D~i~~~~vl~~~~~ 267 (359)
.+..+|||||||+|.++..+++..|+.+++++|++. +++.|++ ..++.+..+|+.+ +++ .||+|++..+.
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~----- 158 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP----- 158 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCC-----
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCCh-----
Confidence 456899999999999999999998888999999955 8877763 4678999999854 333 49999986552
Q ss_pred hHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 018205 268 EDCLKILKRCREAIASRGDRGKVIIIDIVI 297 (359)
Q Consensus 268 ~~~~~~L~~~~~~L~p~~~gG~lli~~~~~ 297 (359)
..++++.++|+| ||.+++..+..
T Consensus 159 ----~~l~~~~~~L~p---gG~l~~~~~~~ 181 (269)
T 1p91_A 159 ----CKAEELARVVKP---GGWVITATPGP 181 (269)
T ss_dssp ----CCHHHHHHHEEE---EEEEEEEEECT
T ss_pred ----hhHHHHHHhcCC---CcEEEEEEcCH
Confidence 258999999999 89999887654
No 182
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6
Probab=99.02 E-value=3.7e-10 Score=103.37 Aligned_cols=96 Identities=14% Similarity=0.222 Sum_probs=74.5
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCC-------CCCceEeeCCCCC-CCC--CccEEEEcchh
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPD-------TDNLKFIAGDMFQ-SIP--PADAFFFKAIF 262 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~d~~~-~~p--~~D~i~~~~vl 262 (359)
.+..+|||||||+|.++..+++. +..+++++|++.+++.|++ .++++++.+|+.+ +.| .||+|++..+.
T Consensus 37 ~~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~ 115 (328)
T 1g6q_1 37 FKDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG 115 (328)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred cCCCEEEEecCccHHHHHHHHHC-CCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCch
Confidence 45689999999999999998886 4458999999877766552 3679999999965 455 49999998654
Q ss_pred ccCC-chHHHHHHHHHHHhcccCCCCcEEEE
Q 018205 263 HAFV-DEDCLKILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 263 ~~~~-~~~~~~~L~~~~~~L~p~~~gG~lli 292 (359)
+.+. ......+++.+.++|+| ||.++.
T Consensus 116 ~~l~~~~~~~~~l~~~~~~Lkp---gG~li~ 143 (328)
T 1g6q_1 116 YFLLYESMMDTVLYARDHYLVE---GGLIFP 143 (328)
T ss_dssp TTBSTTCCHHHHHHHHHHHEEE---EEEEES
T ss_pred hhcccHHHHHHHHHHHHhhcCC---CeEEEE
Confidence 4432 23446799999999999 787763
No 183
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=99.02 E-value=3e-10 Score=102.39 Aligned_cols=98 Identities=17% Similarity=0.310 Sum_probs=75.7
Q ss_pred CCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC------CCCceEeeCCCCC---CCC--CccEEEEcchh
Q 018205 195 LGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD------TDNLKFIAGDMFQ---SIP--PADAFFFKAIF 262 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~------~~~v~~~~~d~~~---~~p--~~D~i~~~~vl 262 (359)
..+|||||||+|.++..+++.+|+.+++++|++ .+++.|++ .++++++.+|..+ ..+ .||+|++....
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~ 169 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFA 169 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence 359999999999999999999999999999995 48887762 4689999999854 233 49999986544
Q ss_pred ccCCchH--HHHHHHHHHHhcccCCCCcEEEEEee
Q 018205 263 HAFVDED--CLKILKRCREAIASRGDRGKVIIIDI 295 (359)
Q Consensus 263 ~~~~~~~--~~~~L~~~~~~L~p~~~gG~lli~~~ 295 (359)
+...... ..+++++++++|+| ||.+++...
T Consensus 170 ~~~~~~~L~t~efl~~~~r~Lkp---gGvlv~~~~ 201 (317)
T 3gjy_A 170 GAITPQNFTTVEFFEHCHRGLAP---GGLYVANCG 201 (317)
T ss_dssp TSCCCGGGSBHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred ccccchhhhHHHHHHHHHHhcCC---CcEEEEEec
Confidence 3322221 15699999999999 777766543
No 184
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=99.02 E-value=1.9e-10 Score=99.99 Aligned_cols=96 Identities=14% Similarity=0.281 Sum_probs=77.3
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC-------CCCceEeeCCCCCC---C---CCccEEEE
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD-------TDNLKFIAGDMFQS---I---PPADAFFF 258 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~-------~~~v~~~~~d~~~~---~---p~~D~i~~ 258 (359)
.+..+|||||||+|..+..+++.+|+.+++++|++ .+++.|++ .++++++.+|+.+. . ..||+|++
T Consensus 53 ~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 132 (233)
T 2gpy_A 53 AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFI 132 (233)
T ss_dssp HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEE
T ss_pred cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEE
Confidence 35689999999999999999999998999999995 47777662 25799999998652 1 24999999
Q ss_pred cchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 259 KAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 259 ~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
....+ ....+++++.++|+| ||.+++.+..
T Consensus 133 ~~~~~-----~~~~~l~~~~~~L~p---gG~lv~~~~~ 162 (233)
T 2gpy_A 133 DAAKG-----QYRRFFDMYSPMVRP---GGLILSDNVL 162 (233)
T ss_dssp EGGGS-----CHHHHHHHHGGGEEE---EEEEEEETTT
T ss_pred CCCHH-----HHHHHHHHHHHHcCC---CeEEEEEcCC
Confidence 77654 346799999999999 8888776543
No 185
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=99.00 E-value=4.4e-10 Score=97.80 Aligned_cols=100 Identities=22% Similarity=0.265 Sum_probs=78.3
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC------CCCceEeeCCCCCCCC---
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD------TDNLKFIAGDMFQSIP--- 251 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~------~~~v~~~~~d~~~~~p--- 251 (359)
..+++.+. ..+..+|||||||+|.++..+++..+ .+++++|++ .+++.|++ ..++++..+|+..+++
T Consensus 81 ~~~~~~l~--~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (235)
T 1jg1_A 81 AIMLEIAN--LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKA 157 (235)
T ss_dssp HHHHHHHT--CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCCC
Confidence 34455554 55678999999999999999999987 799999995 47777652 2469999999844444
Q ss_pred CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 018205 252 PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDI 295 (359)
Q Consensus 252 ~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~ 295 (359)
.||+|++..+++++.+ ++.+.|+| ||.+++...
T Consensus 158 ~fD~Ii~~~~~~~~~~--------~~~~~L~p---gG~lvi~~~ 190 (235)
T 1jg1_A 158 PYDVIIVTAGAPKIPE--------PLIEQLKI---GGKLIIPVG 190 (235)
T ss_dssp CEEEEEECSBBSSCCH--------HHHHTEEE---EEEEEEEEC
T ss_pred CccEEEECCcHHHHHH--------HHHHhcCC---CcEEEEEEe
Confidence 3999999999988753 57889999 888877554
No 186
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=99.00 E-value=6e-10 Score=101.48 Aligned_cols=100 Identities=18% Similarity=0.290 Sum_probs=79.5
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCC-CCeEEEeeccc-ccccCCC------CCCceEeeCCCCCCC---C
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFP-GIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQSI---P 251 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~~~---p 251 (359)
.+++.+. ..+..+|||||||+|.++..+++..+ +.+++++|++. +++.|++ ..++++..+|+.+.. .
T Consensus 66 ~l~~~l~--~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~ 143 (317)
T 1dl5_A 66 LFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFS 143 (317)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHhcC--CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCC
Confidence 4555555 55678999999999999999999877 47899999954 8777662 346999999996533 2
Q ss_pred CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 018205 252 PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDI 295 (359)
Q Consensus 252 ~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~ 295 (359)
.||+|++..++++++ +++.+.|+| ||.+++...
T Consensus 144 ~fD~Iv~~~~~~~~~--------~~~~~~Lkp---gG~lvi~~~ 176 (317)
T 1dl5_A 144 PYDVIFVTVGVDEVP--------ETWFTQLKE---GGRVIVPIN 176 (317)
T ss_dssp CEEEEEECSBBSCCC--------HHHHHHEEE---EEEEEEEBC
T ss_pred CeEEEEEcCCHHHHH--------HHHHHhcCC---CcEEEEEEC
Confidence 499999999999886 467889999 888888653
No 187
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=99.00 E-value=2e-10 Score=99.17 Aligned_cols=98 Identities=12% Similarity=0.138 Sum_probs=76.9
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCC-CCeEEEeecc-cccccCCC-------CCCceEeeCCCCCC---C------CCcc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFP-GIKCTVLDLP-HVVPKVPD-------TDNLKFIAGDMFQS---I------PPAD 254 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~-~~~~~a~~-------~~~v~~~~~d~~~~---~------p~~D 254 (359)
.+..+|||||||+|..+..+++.+| +.+++++|++ .+++.|++ .++++++.+|+.+. . ..||
T Consensus 63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 142 (225)
T 3tr6_A 63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYD 142 (225)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEE
T ss_pred hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCcc
Confidence 3568999999999999999999987 7899999995 47777652 35799999998442 1 4599
Q ss_pred EEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecC
Q 018205 255 AFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVIN 298 (359)
Q Consensus 255 ~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~ 298 (359)
+|++... ......+++++.++|+| ||.+++.+....
T Consensus 143 ~v~~~~~-----~~~~~~~l~~~~~~L~p---gG~lv~~~~~~~ 178 (225)
T 3tr6_A 143 LIYIDAD-----KANTDLYYEESLKLLRE---GGLIAVDNVLRR 178 (225)
T ss_dssp EEEECSC-----GGGHHHHHHHHHHHEEE---EEEEEEECSSGG
T ss_pred EEEECCC-----HHHHHHHHHHHHHhcCC---CcEEEEeCCCcC
Confidence 9996543 34456799999999999 888777665543
No 188
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=98.99 E-value=2e-10 Score=94.43 Aligned_cols=95 Identities=9% Similarity=0.055 Sum_probs=71.2
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----CCCceEeeCCCCCCCC-------CccEEEEcc
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----TDNLKFIAGDMFQSIP-------PADAFFFKA 260 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----~~~v~~~~~d~~~~~p-------~~D~i~~~~ 260 (359)
+..+|||+|||+|.++..+++..+. ++++|++. +++.|+. ..+++++.+|+.+..+ .||+|++..
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 118 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWE--AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCE--EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence 5689999999999999999998655 99999954 8877762 1279999999854221 599999988
Q ss_pred hhccCCchHHHHHHHHHH--HhcccCCCCcEEEEEeeec
Q 018205 261 IFHAFVDEDCLKILKRCR--EAIASRGDRGKVIIIDIVI 297 (359)
Q Consensus 261 vl~~~~~~~~~~~L~~~~--~~L~p~~~gG~lli~~~~~ 297 (359)
.++ -..+ .+++.+. ++|+| ||.+++.....
T Consensus 119 ~~~-~~~~---~~~~~~~~~~~L~~---gG~~~~~~~~~ 150 (171)
T 1ws6_A 119 PYA-MDLA---ALFGELLASGLVEA---GGLYVLQHPKD 150 (171)
T ss_dssp CTT-SCTT---HHHHHHHHHTCEEE---EEEEEEEEETT
T ss_pred CCc-hhHH---HHHHHHHhhcccCC---CcEEEEEeCCc
Confidence 776 2222 3555555 99999 78777755443
No 189
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=98.99 E-value=2.1e-10 Score=98.88 Aligned_cols=98 Identities=10% Similarity=0.246 Sum_probs=76.2
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCC-CCeEEEeecc-cccccCCC-------CCCceEeeCCCCC---CC------CCcc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFP-GIKCTVLDLP-HVVPKVPD-------TDNLKFIAGDMFQ---SI------PPAD 254 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~-~~~~~a~~-------~~~v~~~~~d~~~---~~------p~~D 254 (359)
.+..+|||||||+|..+..+++..+ +.+++++|++ .+++.|++ .++++++.+|+.+ .. ..||
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD 136 (221)
T 3u81_A 57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD 136 (221)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCS
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceE
Confidence 3568999999999999999999864 7899999995 48877763 3579999999732 22 2599
Q ss_pred EEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 255 AFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 255 ~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
+|++....+++. ....+++.+ ++|+| ||.+++.+..
T Consensus 137 ~V~~d~~~~~~~--~~~~~~~~~-~~Lkp---gG~lv~~~~~ 172 (221)
T 3u81_A 137 MVFLDHWKDRYL--PDTLLLEKC-GLLRK---GTVLLADNVI 172 (221)
T ss_dssp EEEECSCGGGHH--HHHHHHHHT-TCCCT---TCEEEESCCC
T ss_pred EEEEcCCcccch--HHHHHHHhc-cccCC---CeEEEEeCCC
Confidence 999988777663 334578777 99999 8877775544
No 190
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=98.99 E-value=2.6e-10 Score=104.74 Aligned_cols=101 Identities=16% Similarity=0.237 Sum_probs=76.6
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHH-CCCCeEEEeeccc-ccccCCC-----------------CCCceEee
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEA-FPGIKCTVLDLPH-VVPKVPD-----------------TDNLKFIA 243 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~~~-~~~~a~~-----------------~~~v~~~~ 243 (359)
.++..+. ..+..+|||+|||+|.++..+++. .|+.+++++|+++ +++.|++ ..++++..
T Consensus 96 ~~l~~l~--~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~ 173 (336)
T 2b25_A 96 MILSMMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH 173 (336)
T ss_dssp HHHHHHT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred HHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEE
Confidence 3455555 566789999999999999999998 5778999999954 7776652 26899999
Q ss_pred CCCCCC---CC--CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 018205 244 GDMFQS---IP--PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDI 295 (359)
Q Consensus 244 ~d~~~~---~p--~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~ 295 (359)
+|+.+. ++ .||+|++.. +++. .+++++.++|+| ||.+++...
T Consensus 174 ~d~~~~~~~~~~~~fD~V~~~~-----~~~~--~~l~~~~~~Lkp---gG~lv~~~~ 220 (336)
T 2b25_A 174 KDISGATEDIKSLTFDAVALDM-----LNPH--VTLPVFYPHLKH---GGVCAVYVV 220 (336)
T ss_dssp SCTTCCC-------EEEEEECS-----SSTT--TTHHHHGGGEEE---EEEEEEEES
T ss_pred CChHHcccccCCCCeeEEEECC-----CCHH--HHHHHHHHhcCC---CcEEEEEeC
Confidence 999653 33 399999843 2221 289999999999 898887664
No 191
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=98.98 E-value=7.5e-10 Score=102.38 Aligned_cols=95 Identities=15% Similarity=0.239 Sum_probs=71.7
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCC-------CCCceEeeCCCCC-CCC-CccEEEEcchhcc
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPD-------TDNLKFIAGDMFQ-SIP-PADAFFFKAIFHA 264 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~d~~~-~~p-~~D~i~~~~vl~~ 264 (359)
+.++|||||||+|.++...++.. ..+|+++|.+++++.|++ .++|+++.+|+.+ .+| .+|+|++-.+-+.
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~aG-A~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~~~ 161 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQAG-ARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGYG 161 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTT-CSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCBTT
T ss_pred CCCEEEEeCCCccHHHHHHHHhC-CCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeeccccc
Confidence 46899999999999998877763 348999999777766652 5789999999966 566 4999998444333
Q ss_pred CC-chHHHHHHHHHHHhcccCCCCcEEEE
Q 018205 265 FV-DEDCLKILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 265 ~~-~~~~~~~L~~~~~~L~p~~~gG~lli 292 (359)
+. ......++....++|+| ||.++-
T Consensus 162 l~~e~~l~~~l~a~~r~Lkp---~G~~iP 187 (376)
T 4hc4_A 162 LLHESMLSSVLHARTKWLKE---GGLLLP 187 (376)
T ss_dssp BTTTCSHHHHHHHHHHHEEE---EEEEES
T ss_pred ccccchhhhHHHHHHhhCCC---CceECC
Confidence 22 23456788888999999 776653
No 192
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Probab=98.98 E-value=1.8e-09 Score=92.43 Aligned_cols=134 Identities=10% Similarity=0.026 Sum_probs=91.3
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC-----CCCCceEeeCCCCC-CCC-CccEEEEcchhcc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP-----DTDNLKFIAGDMFQ-SIP-PADAFFFKAIFHA 264 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~-----~~~~v~~~~~d~~~-~~p-~~D~i~~~~vl~~ 264 (359)
..+.+|||||||+|-++..+. |..+++++|++. +++.++ ...+.++...|... +.| .||++++.-++|+
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLllk~lh~ 180 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALIFKLLPL 180 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEEESCHHH
T ss_pred CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHHHHHHHH
Confidence 457899999999999999887 789999999955 888776 25677899999966 444 4999999999999
Q ss_pred CCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccC-HHHHHHHHHHcCCcee
Q 018205 265 FVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERT-EKEWEKLFLDAGFSHF 343 (359)
Q Consensus 265 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t-~~~~~~ll~~aGf~~~ 343 (359)
+.+++....+ ++.+.|++ ++++|.=++..-.+..+ |...+ ...|++.+ ...+.++
T Consensus 181 LE~q~~~~~~-~ll~aL~~----~~vvVsfPtksl~Gr~~------------------gm~~~Y~~~~e~~~-~~~~~~~ 236 (253)
T 3frh_A 181 LEREQAGSAM-ALLQSLNT----PRMAVSFPTRSLGGRGK------------------GMEANYAAWFEGGL-PAEFEIE 236 (253)
T ss_dssp HHHHSTTHHH-HHHHHCBC----SEEEEEEECC-----------------------------CHHHHHHHHS-CTTEEEE
T ss_pred hhhhchhhHH-HHHHHhcC----CCEEEEcChHHhcCCCc------------------chhhHHHHHHHHHh-hccchhh
Confidence 8766554455 88889998 45555444332221110 01112 33455554 5566777
Q ss_pred EEEEeCCcee
Q 018205 344 KITPVYGIKS 353 (359)
Q Consensus 344 ~~~~~~~~~~ 353 (359)
+...+++-..
T Consensus 237 ~~~~~~nEl~ 246 (253)
T 3frh_A 237 DKKTIGTELI 246 (253)
T ss_dssp EEEEETTEEE
T ss_pred hheecCceEE
Confidence 7777766443
No 193
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=98.96 E-value=2e-10 Score=97.53 Aligned_cols=98 Identities=16% Similarity=0.176 Sum_probs=73.9
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------C--CCceEeeCCCCCC---C--CC-ccEEEE
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------T--DNLKFIAGDMFQS---I--PP-ADAFFF 258 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~--~~v~~~~~d~~~~---~--p~-~D~i~~ 258 (359)
+..+|||+|||+|.++..++.+.. .+++++|++. +++.|++ . ++++++.+|+.+. . .. ||+|++
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 131 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 131 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHccC-CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence 457999999999999998777643 5899999954 8887762 2 6899999998541 1 35 999999
Q ss_pred cchhccCCchHHHHHHHHH--HHhcccCCCCcEEEEEeeecC
Q 018205 259 KAIFHAFVDEDCLKILKRC--REAIASRGDRGKVIIIDIVIN 298 (359)
Q Consensus 259 ~~vl~~~~~~~~~~~L~~~--~~~L~p~~~gG~lli~~~~~~ 298 (359)
...++ . .....+++.+ .++|+| ||.+++......
T Consensus 132 ~~~~~-~--~~~~~~l~~~~~~~~Lkp---gG~l~i~~~~~~ 167 (201)
T 2ift_A 132 DPPFH-F--NLAEQAISLLCENNWLKP---NALIYVETEKDK 167 (201)
T ss_dssp CCCSS-S--CHHHHHHHHHHHTTCEEE---EEEEEEEEESSS
T ss_pred CCCCC-C--ccHHHHHHHHHhcCccCC---CcEEEEEECCCC
Confidence 87754 3 3445688888 557999 888777665443
No 194
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*
Probab=98.94 E-value=2.1e-09 Score=97.02 Aligned_cols=95 Identities=16% Similarity=0.264 Sum_probs=68.9
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-----ccccccCC--C--CCCceEeeC-CCCC-CCCCccEEEEcc
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-----PHVVPKVP--D--TDNLKFIAG-DMFQ-SIPPADAFFFKA 260 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-----~~~~~~a~--~--~~~v~~~~~-d~~~-~~p~~D~i~~~~ 260 (359)
+.+..+|||||||+|.++..++++ .+++++|+ +.+++.+. . .+++.++.+ |+.. +...||+|+|..
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~~~~fD~V~sd~ 156 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLCDI 156 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCCcCCCCEEEECC
Confidence 456689999999999999999987 37999999 43443332 1 257899999 9865 333599999976
Q ss_pred hhc---cCCchH-HHHHHHHHHHhcccCCCCcEEEE
Q 018205 261 IFH---AFVDED-CLKILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 261 vl~---~~~~~~-~~~~L~~~~~~L~p~~~gG~lli 292 (359)
.++ ...+.. ...+|+.+.++|+| ||.+++
T Consensus 157 ~~~~g~~~~d~~~~l~~L~~~~~~Lkp---GG~~v~ 189 (305)
T 2p41_A 157 GESSPNPTVEAGRTLRVLNLVENWLSN---NTQFCV 189 (305)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHCCT---TCEEEE
T ss_pred ccccCcchhhHHHHHHHHHHHHHHhCC---CCEEEE
Confidence 653 222221 22589999999999 886666
No 195
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=98.94 E-value=7e-10 Score=91.93 Aligned_cols=107 Identities=10% Similarity=0.129 Sum_probs=77.0
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCCC---C-
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQS---I- 250 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~~---~- 250 (359)
.+++.+. ...+..+|||+|||+|.++..+++. +..+++++|+++ +++.|++ .++++++.+|+.+. .
T Consensus 21 ~~~~~l~-~~~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 98 (177)
T 2esr_A 21 AIFNMIG-PYFNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLT 98 (177)
T ss_dssp HHHHHHC-SCCCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBC
T ss_pred HHHHHHH-hhcCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhc
Confidence 4444443 1345689999999999999999887 567999999954 8877762 24799999998542 2
Q ss_pred CCccEEEEcchhccCCchHHHHHHHHHH--HhcccCCCCcEEEEEeeec
Q 018205 251 PPADAFFFKAIFHAFVDEDCLKILKRCR--EAIASRGDRGKVIIIDIVI 297 (359)
Q Consensus 251 p~~D~i~~~~vl~~~~~~~~~~~L~~~~--~~L~p~~~gG~lli~~~~~ 297 (359)
..||+|++...++. .....+++.+. ++|+| ||.+++.....
T Consensus 99 ~~fD~i~~~~~~~~---~~~~~~~~~l~~~~~L~~---gG~l~~~~~~~ 141 (177)
T 2esr_A 99 GRFDLVFLDPPYAK---ETIVATIEALAAKNLLSE---QVMVVCETDKT 141 (177)
T ss_dssp SCEEEEEECCSSHH---HHHHHHHHHHHHTTCEEE---EEEEEEEEETT
T ss_pred CCCCEEEECCCCCc---chHHHHHHHHHhCCCcCC---CcEEEEEECCc
Confidence 24999999866542 23345677776 89999 78777765443
No 196
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=98.94 E-value=2.7e-10 Score=111.95 Aligned_cols=103 Identities=17% Similarity=0.277 Sum_probs=81.9
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC----CC--CCceEeeCCCCC---CC-C-CccEEEEcc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP----DT--DNLKFIAGDMFQ---SI-P-PADAFFFKA 260 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~----~~--~~v~~~~~d~~~---~~-p-~~D~i~~~~ 260 (359)
..+.+|||||||.|.++..+++. +.+|+|+|+++ +++.|+ +. .+++|.+++..+ .. + .||+|+|..
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e 142 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLS 142 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEES
T ss_pred CCCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECc
Confidence 45689999999999999999998 78999999965 888776 22 368999998843 22 2 499999999
Q ss_pred hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCC
Q 018205 261 IFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEK 300 (359)
Q Consensus 261 vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~ 300 (359)
+|||.++++...-+.++.+.|++ ++..++......+.
T Consensus 143 ~~ehv~~~~~~~~~~~~~~tl~~---~~~~~~~~~~~~e~ 179 (569)
T 4azs_A 143 VFHHIVHLHGIDEVKRLLSRLAD---VTQAVILELAVKEE 179 (569)
T ss_dssp CHHHHHHHHCHHHHHHHHHHHHH---HSSEEEEECCCTTS
T ss_pred chhcCCCHHHHHHHHHHHHHhcc---ccceeeEEeccccc
Confidence 99999887655556778888888 78888777665543
No 197
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=98.92 E-value=2.3e-10 Score=97.72 Aligned_cols=96 Identities=17% Similarity=0.236 Sum_probs=74.4
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCC-CCeEEEeeccc-ccccCCC-------CCCceEeeCCCCC--C-CCCccEEEEcch
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFP-GIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQ--S-IPPADAFFFKAI 261 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~--~-~p~~D~i~~~~v 261 (359)
+..+|||||||+|..+..+++..| +.+++++|++. +++.|++ .++++++.+|..+ + .++||+|++...
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~ 135 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDIDILFMDCD 135 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCSEEEEEEETT
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCCCCEEEEcCC
Confidence 468999999999999999999987 78999999954 8877662 3579999999854 2 222999998632
Q ss_pred hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 018205 262 FHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVI 297 (359)
Q Consensus 262 l~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~ 297 (359)
......+++++.++|+| ||.+++.+...
T Consensus 136 -----~~~~~~~l~~~~~~Lkp---gG~lv~~~~~~ 163 (210)
T 3c3p_A 136 -----VFNGADVLERMNRCLAK---NALLIAVNALR 163 (210)
T ss_dssp -----TSCHHHHHHHHGGGEEE---EEEEEEESSSS
T ss_pred -----hhhhHHHHHHHHHhcCC---CeEEEEECccc
Confidence 23346799999999999 78777655433
No 198
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=98.92 E-value=3.3e-09 Score=91.59 Aligned_cols=94 Identities=21% Similarity=0.216 Sum_probs=75.4
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHC-----CCCeEEEeeccc-ccccCCC-----------CCCceEeeCCCCCCC----
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAF-----PGIKCTVLDLPH-VVPKVPD-----------TDNLKFIAGDMFQSI---- 250 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~-----p~~~~~~~D~~~-~~~~a~~-----------~~~v~~~~~d~~~~~---- 250 (359)
..+..+|||||||+|.++..+++.. |+.+++++|++. +++.|++ ..+++++.+|+.+..
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK 157 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence 4567899999999999999999986 567999999954 7777652 358999999996543
Q ss_pred C---CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 251 P---PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 251 p---~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
+ .||+|++...++++ ++++.+.|+| ||.+++.-..
T Consensus 158 ~~~~~fD~I~~~~~~~~~--------~~~~~~~Lkp---gG~lv~~~~~ 195 (227)
T 2pbf_A 158 KELGLFDAIHVGASASEL--------PEILVDLLAE---NGKLIIPIEE 195 (227)
T ss_dssp HHHCCEEEEEECSBBSSC--------CHHHHHHEEE---EEEEEEEEEE
T ss_pred ccCCCcCEEEECCchHHH--------HHHHHHhcCC---CcEEEEEEcc
Confidence 2 49999999888754 4778899999 8888886543
No 199
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=98.91 E-value=3.4e-09 Score=96.31 Aligned_cols=104 Identities=10% Similarity=0.140 Sum_probs=76.3
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCC-CCeEEEeeccc-ccccCCC------CCCceEeeCCCCCC--CC-CccEEEEc-
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFP-GIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQS--IP-PADAFFFK- 259 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~~--~p-~~D~i~~~- 259 (359)
..+..+|||+|||+|..+..+++..+ +.+++++|++. +++.+++ ..+++++.+|+.+. .+ .||+|++.
T Consensus 116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~ 195 (315)
T 1ixk_A 116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA 195 (315)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEeC
Confidence 45678999999999999999999875 47999999954 7776652 34799999998542 22 49999973
Q ss_pred -----chhccCC-------chH-------HHHHHHHHHHhcccCCCCcEEEEEeeecC
Q 018205 260 -----AIFHAFV-------DED-------CLKILKRCREAIASRGDRGKVIIIDIVIN 298 (359)
Q Consensus 260 -----~vl~~~~-------~~~-------~~~~L~~~~~~L~p~~~gG~lli~~~~~~ 298 (359)
.+++..+ .++ ..++|+++.++|+| ||.+++.+....
T Consensus 196 Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~Lkp---GG~lv~stcs~~ 250 (315)
T 1ixk_A 196 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKP---GGILVYSTCSLE 250 (315)
T ss_dssp CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEESCCC
T ss_pred CCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCC---CCEEEEEeCCCC
Confidence 2333222 111 14799999999999 888888765443
No 200
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=98.90 E-value=9e-10 Score=91.92 Aligned_cols=98 Identities=10% Similarity=0.078 Sum_probs=73.1
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC-------CCCceEeeCCCCCC-------CCCccEEE
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD-------TDNLKFIAGDMFQS-------IPPADAFF 257 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~-------~~~v~~~~~d~~~~-------~p~~D~i~ 257 (359)
.+..+|||+|||+|.++..+++ .+..+++++|++ .+++.|+. .++++++.+|+.+. ...||+|+
T Consensus 43 ~~~~~vLD~GcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~ 121 (187)
T 2fhp_A 43 FDGGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 121 (187)
T ss_dssp CSSCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCCEEEeCCccCHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEE
Confidence 3568999999999999998887 456799999995 48887762 25799999998552 23599999
Q ss_pred EcchhccCCchHHHHHHHHH--HHhcccCCCCcEEEEEeeec
Q 018205 258 FKAIFHAFVDEDCLKILKRC--REAIASRGDRGKVIIIDIVI 297 (359)
Q Consensus 258 ~~~vl~~~~~~~~~~~L~~~--~~~L~p~~~gG~lli~~~~~ 297 (359)
+...++.... ..+++.+ .++|+| ||.+++.....
T Consensus 122 ~~~~~~~~~~---~~~~~~l~~~~~L~~---gG~l~~~~~~~ 157 (187)
T 2fhp_A 122 LDPPYAKQEI---VSQLEKMLERQLLTN---EAVIVCETDKT 157 (187)
T ss_dssp ECCCGGGCCH---HHHHHHHHHTTCEEE---EEEEEEEEETT
T ss_pred ECCCCCchhH---HHHHHHHHHhcccCC---CCEEEEEeCCc
Confidence 9877653322 3466666 788999 78777755443
No 201
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=98.90 E-value=4.8e-10 Score=97.78 Aligned_cols=97 Identities=16% Similarity=0.243 Sum_probs=75.7
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCC-CCeEEEeecc-cccccCCC-------CCCceEeeCCCCCC---C----------
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFP-GIKCTVLDLP-HVVPKVPD-------TDNLKFIAGDMFQS---I---------- 250 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~-~~~~~a~~-------~~~v~~~~~d~~~~---~---------- 250 (359)
.+..+|||||||+|..+..+++..| +.+++++|++ .+++.|++ .+++++..+|+.+. .
T Consensus 59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 138 (239)
T 2hnk_A 59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWA 138 (239)
T ss_dssp HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGG
T ss_pred hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccc
Confidence 4578999999999999999999987 7899999995 47776652 24699999997431 1
Q ss_pred -------CCccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 018205 251 -------PPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVI 297 (359)
Q Consensus 251 -------p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~ 297 (359)
..||+|++.... +....+++++.++|+| ||.+++.+...
T Consensus 139 ~~f~~~~~~fD~I~~~~~~-----~~~~~~l~~~~~~L~p---gG~lv~~~~~~ 184 (239)
T 2hnk_A 139 SDFAFGPSSIDLFFLDADK-----ENYPNYYPLILKLLKP---GGLLIADNVLW 184 (239)
T ss_dssp TTTCCSTTCEEEEEECSCG-----GGHHHHHHHHHHHEEE---EEEEEEECSSG
T ss_pred ccccCCCCCcCEEEEeCCH-----HHHHHHHHHHHHHcCC---CeEEEEEcccc
Confidence 359999987543 3446799999999999 78877765443
No 202
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=98.90 E-value=9.6e-10 Score=95.07 Aligned_cols=92 Identities=18% Similarity=0.278 Sum_probs=73.8
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCC------CCeEEEeeccc-ccccCCC-----------CCCceEeeCCCCCCCC--
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFP------GIKCTVLDLPH-VVPKVPD-----------TDNLKFIAGDMFQSIP-- 251 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p------~~~~~~~D~~~-~~~~a~~-----------~~~v~~~~~d~~~~~p-- 251 (359)
..+..+|||||||+|.++..+++..+ ..+++++|++. +++.|++ ..++++..+|..+.++
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPN 161 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGG
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCcC
Confidence 45678999999999999999998754 36899999954 7777662 3589999999966443
Q ss_pred -CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 252 -PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 252 -~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
.||+|++...++++. +++.+.|+| ||.+++.-
T Consensus 162 ~~fD~I~~~~~~~~~~--------~~~~~~Lkp---gG~lvi~~ 194 (227)
T 1r18_A 162 APYNAIHVGAAAPDTP--------TELINQLAS---GGRLIVPV 194 (227)
T ss_dssp CSEEEEEECSCBSSCC--------HHHHHTEEE---EEEEEEEE
T ss_pred CCccEEEECCchHHHH--------HHHHHHhcC---CCEEEEEE
Confidence 499999999988764 678889999 88877754
No 203
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=98.90 E-value=4e-10 Score=97.12 Aligned_cols=93 Identities=10% Similarity=0.166 Sum_probs=72.3
Q ss_pred CeEEEeCCCcchHHHHHHHHCC-CCeEEEeeccc-ccccCCC-------C-CCceEeeCCCCC---CC--CCccEEEEcc
Q 018205 196 GSLVDVGGGTGSFARIISEAFP-GIKCTVLDLPH-VVPKVPD-------T-DNLKFIAGDMFQ---SI--PPADAFFFKA 260 (359)
Q Consensus 196 ~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~-~~~~a~~-------~-~~v~~~~~d~~~---~~--p~~D~i~~~~ 260 (359)
.+|||||||+|..+..+++..| +.+++++|++. +++.|++ . ++++++.+|..+ .. ..||+|++..
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d~ 137 (221)
T 3dr5_A 58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQV 137 (221)
T ss_dssp CEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEECC
T ss_pred CCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEcC
Confidence 4999999999999999999875 78999999954 8877762 2 589999999854 23 2499999864
Q ss_pred hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 261 IFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 261 vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
.. .....+++++.++|+| ||.+++.+..
T Consensus 138 ~~-----~~~~~~l~~~~~~Lkp---GG~lv~dn~~ 165 (221)
T 3dr5_A 138 SP-----MDLKALVDAAWPLLRR---GGALVLADAL 165 (221)
T ss_dssp CT-----TTHHHHHHHHHHHEEE---EEEEEETTTT
T ss_pred cH-----HHHHHHHHHHHHHcCC---CcEEEEeCCC
Confidence 32 3345699999999999 7766664433
No 204
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=98.89 E-value=1e-09 Score=96.29 Aligned_cols=97 Identities=16% Similarity=0.151 Sum_probs=75.6
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCC-CCeEEEeeccc-ccccCCC-------CCCceEeeCCCCCC---C-------CCc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFP-GIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQS---I-------PPA 253 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~~---~-------p~~ 253 (359)
.+..+|||||||+|..+..+++..| +.+++++|++. +++.|++ .++++++.+|..+. . ..|
T Consensus 78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 157 (247)
T 1sui_A 78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 157 (247)
T ss_dssp TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence 3568999999999999999999987 78999999954 7777662 35799999998541 2 349
Q ss_pred cEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 018205 254 DAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVI 297 (359)
Q Consensus 254 D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~ 297 (359)
|+|++... ......+++++.++|+| ||.+++-+...
T Consensus 158 D~V~~d~~-----~~~~~~~l~~~~~~Lkp---GG~lv~d~~~~ 193 (247)
T 1sui_A 158 DFIFVDAD-----KDNYLNYHKRLIDLVKV---GGVIGYDNTLW 193 (247)
T ss_dssp SEEEECSC-----STTHHHHHHHHHHHBCT---TCCEEEECTTG
T ss_pred EEEEEcCc-----hHHHHHHHHHHHHhCCC---CeEEEEecCCc
Confidence 99998643 23346799999999999 88777655443
No 205
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=98.88 E-value=3.1e-09 Score=94.77 Aligned_cols=102 Identities=14% Similarity=0.280 Sum_probs=78.9
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHH-CCCCeEEEeecc-cccccCCC---------CCCceEeeCCCCC-CC
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEA-FPGIKCTVLDLP-HVVPKVPD---------TDNLKFIAGDMFQ-SI 250 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~~-~~~~~a~~---------~~~v~~~~~d~~~-~~ 250 (359)
.++..++ ..+..+|||+|||+|.++..+++. .|+.+++++|++ .+++.|++ .+++++..+|+.+ ++
T Consensus 90 ~i~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~ 167 (280)
T 1i9g_A 90 QIVHEGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSEL 167 (280)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCC
T ss_pred HHHHHcC--CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCC
Confidence 4555555 566789999999999999999986 578899999995 47776652 3589999999965 33
Q ss_pred C--CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 251 P--PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 251 p--~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
+ .||+|++ +.++. ..+++++.++|+| ||.+++..+.
T Consensus 168 ~~~~~D~v~~-----~~~~~--~~~l~~~~~~L~p---gG~l~~~~~~ 205 (280)
T 1i9g_A 168 PDGSVDRAVL-----DMLAP--WEVLDAVSRLLVA---GGVLMVYVAT 205 (280)
T ss_dssp CTTCEEEEEE-----ESSCG--GGGHHHHHHHEEE---EEEEEEEESS
T ss_pred CCCceeEEEE-----CCcCH--HHHHHHHHHhCCC---CCEEEEEeCC
Confidence 3 4999998 23333 2589999999999 8998887643
No 206
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=98.87 E-value=5.1e-09 Score=91.52 Aligned_cols=100 Identities=15% Similarity=0.225 Sum_probs=77.9
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCCCC-C--
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQSI-P-- 251 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~~~-p-- 251 (359)
.++..+. ..+..+|||+|||+|.++..+++. ..+++++|+++ +++.|++ .+++++..+|+.+.. +
T Consensus 82 ~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 157 (248)
T 2yvl_A 82 YIALKLN--LNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEG 157 (248)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTT
T ss_pred HHHHhcC--CCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCC
Confidence 3444454 556789999999999999999998 77999999954 7776652 268999999997654 3
Q ss_pred CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 252 PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 252 ~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
.||+|++. .++. ..+++++.++|+| ||.+++....
T Consensus 158 ~~D~v~~~-----~~~~--~~~l~~~~~~L~~---gG~l~~~~~~ 192 (248)
T 2yvl_A 158 IFHAAFVD-----VREP--WHYLEKVHKSLME---GAPVGFLLPT 192 (248)
T ss_dssp CBSEEEEC-----SSCG--GGGHHHHHHHBCT---TCEEEEEESS
T ss_pred cccEEEEC-----CcCH--HHHHHHHHHHcCC---CCEEEEEeCC
Confidence 49999972 3333 3589999999999 8999987643
No 207
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=98.86 E-value=3.5e-09 Score=91.34 Aligned_cols=93 Identities=17% Similarity=0.218 Sum_probs=73.6
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeeccc-ccccCCC-----------CCCceEeeCCCCCCC---CCccE
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDLPH-VVPKVPD-----------TDNLKFIAGDMFQSI---PPADA 255 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~-~~~~a~~-----------~~~v~~~~~d~~~~~---p~~D~ 255 (359)
..+..+|||||||+|..+..+++.. |..+++++|++. +++.+++ .++++++.+|+.... ..||+
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 154 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA 154 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence 4567899999999999999999885 667999999954 7776652 357999999985432 24999
Q ss_pred EEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 018205 256 FFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDI 295 (359)
Q Consensus 256 i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~ 295 (359)
|++...++++ ++++.+.|+| ||.+++...
T Consensus 155 i~~~~~~~~~--------~~~~~~~Lkp---gG~lv~~~~ 183 (226)
T 1i1n_A 155 IHVGAAAPVV--------PQALIDQLKP---GGRLILPVG 183 (226)
T ss_dssp EEECSBBSSC--------CHHHHHTEEE---EEEEEEEES
T ss_pred EEECCchHHH--------HHHHHHhcCC---CcEEEEEEe
Confidence 9998888654 4578899999 888888654
No 208
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=98.86 E-value=1.2e-09 Score=97.28 Aligned_cols=97 Identities=16% Similarity=0.163 Sum_probs=73.1
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC----------CCCceEeeCCCCCC---C-CCccEEEE
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD----------TDNLKFIAGDMFQS---I-PPADAFFF 258 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~----------~~~v~~~~~d~~~~---~-p~~D~i~~ 258 (359)
.+.+|||||||+|.++..+++..+..+++++|++ .+++.|++ .++++++.+|..+. . ..||+|++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~ 154 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV 154 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence 4689999999999999999987677899999995 47776552 46899999998542 2 24999998
Q ss_pred cchhccCCchH--HHHHHHHHHHhcccCCCCcEEEEE
Q 018205 259 KAIFHAFVDED--CLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 259 ~~vl~~~~~~~--~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
....+..+... ..+++++++++|+| ||.+++.
T Consensus 155 d~~~~~~~~~~l~~~~~~~~~~~~L~p---gG~lv~~ 188 (275)
T 1iy9_A 155 DSTEPVGPAVNLFTKGFYAGIAKALKE---DGIFVAQ 188 (275)
T ss_dssp SCSSCCSCCCCCSTTHHHHHHHHHEEE---EEEEEEE
T ss_pred CCCCCCCcchhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence 54433222110 14699999999999 7777664
No 209
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=98.86 E-value=1.3e-09 Score=99.53 Aligned_cols=98 Identities=14% Similarity=0.175 Sum_probs=74.3
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC----------CCCceEeeCCCCC---CCC--CccEE
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD----------TDNLKFIAGDMFQ---SIP--PADAF 256 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~----------~~~v~~~~~d~~~---~~p--~~D~i 256 (359)
..+.+|||||||+|..+..+++..|..+++++|++. +++.|++ .++++++.+|+.+ ..+ .||+|
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 456899999999999999999987888999999954 8776652 3689999999754 222 49999
Q ss_pred EEcchhccCCchH--HHHHHHHHHHhcccCCCCcEEEEE
Q 018205 257 FFKAIFHAFVDED--CLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 257 ~~~~vl~~~~~~~--~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
++....+....+. ...++++++++|+| ||.+++.
T Consensus 199 i~d~~~p~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~ 234 (334)
T 1xj5_A 199 IVDSSDPIGPAKELFEKPFFQSVARALRP---GGVVCTQ 234 (334)
T ss_dssp EECCCCTTSGGGGGGSHHHHHHHHHHEEE---EEEEEEE
T ss_pred EECCCCccCcchhhhHHHHHHHHHHhcCC---CcEEEEe
Confidence 9854321111111 35799999999999 7777764
No 210
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=98.86 E-value=1.2e-09 Score=94.54 Aligned_cols=97 Identities=14% Similarity=0.216 Sum_probs=76.0
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCC-CCeEEEeecc-cccccCCC-------CCCceEeeCCCCCC---C------CCcc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFP-GIKCTVLDLP-HVVPKVPD-------TDNLKFIAGDMFQS---I------PPAD 254 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~-~~~~~a~~-------~~~v~~~~~d~~~~---~------p~~D 254 (359)
.+..+|||||||+|..+..+++..| +.+++++|++ .+++.|++ .++++++.+|+.+. . ..||
T Consensus 68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D 147 (229)
T 2avd_A 68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD 147 (229)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCcc
Confidence 4568999999999999999999887 7899999995 47776652 36899999998431 1 4599
Q ss_pred EEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 018205 255 AFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVI 297 (359)
Q Consensus 255 ~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~ 297 (359)
+|++... ......+++++.++|+| ||.+++.+...
T Consensus 148 ~v~~d~~-----~~~~~~~l~~~~~~L~p---gG~lv~~~~~~ 182 (229)
T 2avd_A 148 VAVVDAD-----KENCSAYYERCLQLLRP---GGILAVLRVLW 182 (229)
T ss_dssp EEEECSC-----STTHHHHHHHHHHHEEE---EEEEEEECCSG
T ss_pred EEEECCC-----HHHHHHHHHHHHHHcCC---CeEEEEECCCc
Confidence 9998543 23446799999999999 78777765443
No 211
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=98.85 E-value=1.5e-09 Score=97.05 Aligned_cols=98 Identities=12% Similarity=0.142 Sum_probs=74.8
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC----------CCCceEeeCCCCCC---CC-CccEEE
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD----------TDNLKFIAGDMFQS---IP-PADAFF 257 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~----------~~~v~~~~~d~~~~---~p-~~D~i~ 257 (359)
+.+.+|||||||+|..+..+++..|..+++++|+++ +++.|++ .++++++.+|..+. .+ .||+|+
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 456899999999999999999887788999999954 7776551 46899999998542 23 499999
Q ss_pred EcchhccCCchHH--HHHHHHHHHhcccCCCCcEEEEE
Q 018205 258 FKAIFHAFVDEDC--LKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 258 ~~~vl~~~~~~~~--~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
+....+..+.... .++++.++++|+| ||.+++.
T Consensus 157 ~d~~~~~~~~~~l~~~~~l~~~~~~L~p---gG~lv~~ 191 (283)
T 2i7c_A 157 VDSSDPIGPAETLFNQNFYEKIYNALKP---NGYCVAQ 191 (283)
T ss_dssp EECCCTTTGGGGGSSHHHHHHHHHHEEE---EEEEEEE
T ss_pred EcCCCCCCcchhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence 8544332222222 5799999999999 7877764
No 212
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=98.85 E-value=6.5e-09 Score=96.08 Aligned_cols=107 Identities=14% Similarity=0.187 Sum_probs=80.1
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeecc-cccccCCC------CCCceEeeCCCCC-C--CC
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDLP-HVVPKVPD------TDNLKFIAGDMFQ-S--IP 251 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~-~~~~~a~~------~~~v~~~~~d~~~-~--~p 251 (359)
.++.... +.+..+|||+|||+|.++..++... |+.+++++|++ .+++.|+. ..++++.++|+.+ + .+
T Consensus 194 ~l~~~~~--~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~~ 271 (354)
T 3tma_A 194 ALLRLAD--ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFFP 271 (354)
T ss_dssp HHHHHTT--CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTCC
T ss_pred HHHHHhC--CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccccC
Confidence 3444444 5667899999999999999999987 88999999995 48887762 2379999999965 2 23
Q ss_pred CccEEEEcchhccCC--ch----HHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 252 PADAFFFKAIFHAFV--DE----DCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 252 ~~D~i~~~~vl~~~~--~~----~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
.||+|+++--+.... .. ....+++++.++|+| ||.++++.
T Consensus 272 ~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~Lkp---gG~l~i~t 317 (354)
T 3tma_A 272 EVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPP---GGRVALLT 317 (354)
T ss_dssp CCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCT---TCEEEEEE
T ss_pred CCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCC---CcEEEEEe
Confidence 489999964432211 11 125799999999999 89998864
No 213
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=98.85 E-value=1.4e-09 Score=97.19 Aligned_cols=98 Identities=13% Similarity=0.148 Sum_probs=71.9
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCC----------------CCCCceEeeCCCCCC---CCC
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVP----------------DTDNLKFIAGDMFQS---IPP 252 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~----------------~~~~v~~~~~d~~~~---~p~ 252 (359)
..+.+|||||||+|.++..+++. |..+++++|++ .+++.|+ ..++++++.+|..+. ...
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~ 152 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 152 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCC
Confidence 34689999999999999999988 88899999995 4766543 246899999997432 235
Q ss_pred ccEEEEcchhccCCchH--HHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 253 ADAFFFKAIFHAFVDED--CLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 253 ~D~i~~~~vl~~~~~~~--~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
||+|++....+..+... ..+++++++++|+| ||.+++..
T Consensus 153 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~p---gG~lv~~~ 193 (281)
T 1mjf_A 153 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNN---PGIYVTQA 193 (281)
T ss_dssp EEEEEEECCCCC-----TTSHHHHHHHHHHEEE---EEEEEEEE
T ss_pred eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCC---CcEEEEEc
Confidence 99999865432221121 25689999999999 77777653
No 214
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=98.84 E-value=1.4e-09 Score=97.45 Aligned_cols=101 Identities=20% Similarity=0.315 Sum_probs=72.5
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCC-CCCC
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQ-SIPP 252 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~-~~p~ 252 (359)
..+++.++ ..+..+|||||||+|.++..+++. ..+++++|++. +++.+++ .++++++.+|+.+ +++.
T Consensus 18 ~~i~~~~~--~~~~~~VLDiG~G~G~lt~~L~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~~ 93 (285)
T 1zq9_A 18 NSIIDKAA--LRPTDVVLEVGPGTGNMTVKLLEK--AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPF 93 (285)
T ss_dssp HHHHHHTC--CCTTCEEEEECCTTSTTHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCC
T ss_pred HHHHHhcC--CCCCCEEEEEcCcccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccchh
Confidence 45566665 556789999999999999999998 45899999954 7776652 2579999999976 5678
Q ss_pred ccEEEEcchhccCCchHHHHHHH--------------HH--HHhcccCCCCcEE
Q 018205 253 ADAFFFKAIFHAFVDEDCLKILK--------------RC--REAIASRGDRGKV 290 (359)
Q Consensus 253 ~D~i~~~~vl~~~~~~~~~~~L~--------------~~--~~~L~p~~~gG~l 290 (359)
||+|+++.. +++..+....+|. ++ +.+++| ||.+
T Consensus 94 fD~vv~nlp-y~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkP---Gg~~ 143 (285)
T 1zq9_A 94 FDTCVANLP-YQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKP---GDKL 143 (285)
T ss_dssp CSEEEEECC-GGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCT---TCTT
T ss_pred hcEEEEecC-cccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCC---CCcc
Confidence 999998533 3444443333442 22 358898 7755
No 215
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=98.84 E-value=1.8e-09 Score=98.02 Aligned_cols=99 Identities=12% Similarity=0.090 Sum_probs=76.1
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----------CCCceEeeCCCCCC----CCCccEE
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----------TDNLKFIAGDMFQS----IPPADAF 256 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----------~~~v~~~~~d~~~~----~p~~D~i 256 (359)
+.+.+|||||||+|.++..+++..|..+++++|++. +++.|++ .++++++.+|+.+. ...||+|
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 356899999999999999999987888999999954 7776551 46899999998542 2249999
Q ss_pred EEcchhcc---CCchH--HHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 257 FFKAIFHA---FVDED--CLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 257 ~~~~vl~~---~~~~~--~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
++....+. -+... ..+++++++++|+| ||.+++..
T Consensus 156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~~ 195 (314)
T 1uir_A 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNP---GGVMGMQT 195 (314)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEE---EEEEEEEE
T ss_pred EECCCCcccccCcchhccHHHHHHHHHHhcCC---CcEEEEEc
Confidence 99765543 11111 25799999999999 88887754
No 216
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=98.84 E-value=1.3e-09 Score=99.26 Aligned_cols=96 Identities=13% Similarity=0.198 Sum_probs=72.8
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC----C------CCCceEeeCCCCCC---C-CCccEEEE
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP----D------TDNLKFIAGDMFQS---I-PPADAFFF 258 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~----~------~~~v~~~~~d~~~~---~-p~~D~i~~ 258 (359)
.+.+|||||||+|.++..+++..|..+++++|+++ +++.|+ . .++++++.+|..+. . ..||+|++
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~ 195 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV 195 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEE
Confidence 46899999999999999999877888999999954 777654 1 46899999998542 2 24999998
Q ss_pred cchhccCC-chHH--HHHHHHHHHhcccCCCCcEEEEE
Q 018205 259 KAIFHAFV-DEDC--LKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 259 ~~vl~~~~-~~~~--~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
... +.+. .... .+++++++++|+| ||.+++.
T Consensus 196 d~~-~p~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~ 229 (321)
T 2pt6_A 196 DSS-DPIGPAETLFNQNFYEKIYNALKP---NGYCVAQ 229 (321)
T ss_dssp ECC-CSSSGGGGGSSHHHHHHHHHHEEE---EEEEEEE
T ss_pred CCc-CCCCcchhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence 543 2222 1111 5799999999999 7777664
No 217
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=98.83 E-value=3.6e-09 Score=89.81 Aligned_cols=96 Identities=11% Similarity=0.197 Sum_probs=71.8
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCC--CC--CCccEEEEcchh
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQ--SI--PPADAFFFKAIF 262 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~--~~--p~~D~i~~~~vl 262 (359)
+..+|||+|||+|.++..++.+.. .+++++|++. +++.|++ .++++++.+|+.+ +. ..||+|++...+
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~ 132 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF 132 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCC
Confidence 458999999999999998877742 3899999954 8887762 2589999999854 22 249999998775
Q ss_pred ccCCchHHHHHHHHHHHh--cccCCCCcEEEEEeee
Q 018205 263 HAFVDEDCLKILKRCREA--IASRGDRGKVIIIDIV 296 (359)
Q Consensus 263 ~~~~~~~~~~~L~~~~~~--L~p~~~gG~lli~~~~ 296 (359)
| . .....+++.+.+. |+| ||.+++....
T Consensus 133 ~-~--~~~~~~l~~l~~~~~L~p---gG~l~i~~~~ 162 (202)
T 2fpo_A 133 R-R--GLLEETINLLEDNGWLAD---EALIYVESEV 162 (202)
T ss_dssp S-T--TTHHHHHHHHHHTTCEEE---EEEEEEEEEG
T ss_pred C-C--CcHHHHHHHHHhcCccCC---CcEEEEEECC
Confidence 4 3 2335688888764 999 7877765543
No 218
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=98.83 E-value=1.6e-09 Score=97.85 Aligned_cols=99 Identities=14% Similarity=0.125 Sum_probs=72.6
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC----------CCCceEeeCCCCC---CC-CCccEEE
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD----------TDNLKFIAGDMFQ---SI-PPADAFF 257 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~----------~~~v~~~~~d~~~---~~-p~~D~i~ 257 (359)
..+.+|||||||+|.++..+++..|..+++++|++ .+++.|++ .++++++.+|..+ .. ..||+|+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 45689999999999999999998788899999995 48776652 4689999999854 12 2499999
Q ss_pred EcchhccCCch--HHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 258 FKAIFHAFVDE--DCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 258 ~~~vl~~~~~~--~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
+....+..+.. ...+++++++++|+| ||.+++..
T Consensus 174 ~d~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~~ 209 (304)
T 2o07_A 174 TDSSDPMGPAESLFKESYYQLMKTALKE---DGVLCCQG 209 (304)
T ss_dssp EECC-----------CHHHHHHHHHEEE---EEEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHhccCC---CeEEEEec
Confidence 85543322111 124689999999999 77776654
No 219
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*
Probab=98.82 E-value=2e-08 Score=89.56 Aligned_cols=116 Identities=14% Similarity=0.090 Sum_probs=79.8
Q ss_pred cCCCCeEEEeCCCc------chHHHHHHHHCC-CCeEEEeecccccccCCCCCCceE-eeCCCCC-CCC-CccEEEEcch
Q 018205 192 FQGLGSLVDVGGGT------GSFARIISEAFP-GIKCTVLDLPHVVPKVPDTDNLKF-IAGDMFQ-SIP-PADAFFFKAI 261 (359)
Q Consensus 192 ~~~~~~vlDvG~G~------G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~~~~v~~-~~~d~~~-~~p-~~D~i~~~~v 261 (359)
+.+..+|||+|||+ |. ..+++..| +.+++++|+++.+ .++++ +++|+.+ +.+ .||+|++...
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~v------~~v~~~i~gD~~~~~~~~~fD~Vvsn~~ 132 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDFV------SDADSTLIGDCATVHTANKWDLIISDMY 132 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCCB------CSSSEEEESCGGGCCCSSCEEEEEECCC
T ss_pred CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCCC------CCCEEEEECccccCCccCcccEEEEcCC
Confidence 45678999999944 66 44566666 6899999996652 47899 9999965 333 4999998643
Q ss_pred hcc--------C-CchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHH
Q 018205 262 FHA--------F-VDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWE 332 (359)
Q Consensus 262 l~~--------~-~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~ 332 (359)
.+. . ..+....+++.++++|+| ||.+++...... ...++.
T Consensus 133 ~~~~g~~~~d~~~~~~l~~~~l~~a~r~Lkp---GG~~v~~~~~~~----------------------------~~~~l~ 181 (290)
T 2xyq_A 133 DPRTKHVTKENDSKEGFFTYLCGFIKQKLAL---GGSIAVKITEHS----------------------------WNADLY 181 (290)
T ss_dssp CCC---CCSCCCCCCTHHHHHHHHHHHHEEE---EEEEEEEECSSS----------------------------CCHHHH
T ss_pred ccccccccccccchHHHHHHHHHHHHHhcCC---CcEEEEEEeccC----------------------------CHHHHH
Confidence 211 1 012345799999999999 888887532211 123566
Q ss_pred HHHHHcCCceeEEE
Q 018205 333 KLFLDAGFSHFKIT 346 (359)
Q Consensus 333 ~ll~~aGf~~~~~~ 346 (359)
+++++.||..+++.
T Consensus 182 ~~l~~~GF~~v~~~ 195 (290)
T 2xyq_A 182 KLMGHFSWWTAFVT 195 (290)
T ss_dssp HHHTTEEEEEEEEE
T ss_pred HHHHHcCCcEEEEE
Confidence 77777888766655
No 220
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=98.82 E-value=2.4e-09 Score=97.07 Aligned_cols=99 Identities=17% Similarity=0.180 Sum_probs=70.9
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC----------CCCceEeeCCCCCC----CCCccEEE
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD----------TDNLKFIAGDMFQS----IPPADAFF 257 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~----------~~~v~~~~~d~~~~----~p~~D~i~ 257 (359)
..+.+|||||||+|..+..+++..|..+++++|++. +++.|++ .++++++.+|..+. ...||+|+
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 346899999999999999999887888999999954 7776551 46899999998542 22499999
Q ss_pred EcchhccCCchHH--HHHHHHHHHhcccCCCCcEEEEEe
Q 018205 258 FKAIFHAFVDEDC--LKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 258 ~~~vl~~~~~~~~--~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
+...-+..+.... .+++++++++|+| ||.+++..
T Consensus 187 ~d~~~~~~~~~~l~t~~~l~~~~~~Lkp---gG~lv~~~ 222 (314)
T 2b2c_A 187 TDSSDPVGPAESLFGQSYYELLRDALKE---DGILSSQG 222 (314)
T ss_dssp ECCC-------------HHHHHHHHEEE---EEEEEEEC
T ss_pred EcCCCCCCcchhhhHHHHHHHHHhhcCC---CeEEEEEC
Confidence 8553322122211 5799999999999 77776643
No 221
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=98.82 E-value=1.3e-09 Score=94.73 Aligned_cols=96 Identities=14% Similarity=0.214 Sum_probs=75.0
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCC-CCeEEEeeccc-ccccCCC-------CCCceEeeCCCCC---CC------CCccE
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFP-GIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQ---SI------PPADA 255 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~---~~------p~~D~ 255 (359)
+..+|||||||+|..+..+++..| +.+++++|+++ +++.|++ .++++++.+|+.+ .+ ..||+
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~ 151 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDL 151 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCE
Confidence 467999999999999999999987 78999999954 7777652 3579999999743 11 45999
Q ss_pred EEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 018205 256 FFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVI 297 (359)
Q Consensus 256 i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~ 297 (359)
|++... .+....+++++.++|+| ||.+++.+...
T Consensus 152 V~~d~~-----~~~~~~~l~~~~~~Lkp---gG~lv~~~~~~ 185 (232)
T 3cbg_A 152 IFIDAD-----KRNYPRYYEIGLNLLRR---GGLMVIDNVLW 185 (232)
T ss_dssp EEECSC-----GGGHHHHHHHHHHTEEE---EEEEEEECTTG
T ss_pred EEECCC-----HHHHHHHHHHHHHHcCC---CeEEEEeCCCc
Confidence 997654 24456799999999999 77777655444
No 222
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=98.81 E-value=2.6e-09 Score=93.07 Aligned_cols=95 Identities=19% Similarity=0.178 Sum_probs=73.7
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCC-CCeEEEeecc-cccccCCC-------CCCceEeeCCCCCC---C-------CCc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFP-GIKCTVLDLP-HVVPKVPD-------TDNLKFIAGDMFQS---I-------PPA 253 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~-~~~~~a~~-------~~~v~~~~~d~~~~---~-------p~~ 253 (359)
.+..+|||||||+|..+..+++..| +.+++++|++ .+++.|++ .++++++.+|..+. . ..|
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 148 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY 148 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence 3568999999999999999999987 7899999995 47776652 35799999998541 2 349
Q ss_pred cEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 018205 254 DAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDI 295 (359)
Q Consensus 254 D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~ 295 (359)
|+|++... ......+++++.++|+| ||.+++-+.
T Consensus 149 D~I~~d~~-----~~~~~~~l~~~~~~L~p---GG~lv~d~~ 182 (237)
T 3c3y_A 149 DFGFVDAD-----KPNYIKYHERLMKLVKV---GGIVAYDNT 182 (237)
T ss_dssp EEEEECSC-----GGGHHHHHHHHHHHEEE---EEEEEEECT
T ss_pred CEEEECCc-----hHHHHHHHHHHHHhcCC---CeEEEEecC
Confidence 99997532 34456799999999999 776655443
No 223
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=98.80 E-value=4.6e-09 Score=93.40 Aligned_cols=99 Identities=16% Similarity=0.138 Sum_probs=78.2
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC------CCCceEeeCCCCCC-CC-CccEEEEcchh
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD------TDNLKFIAGDMFQS-IP-PADAFFFKAIF 262 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~------~~~v~~~~~d~~~~-~p-~~D~i~~~~vl 262 (359)
+.+..+|||+|||+|.++..+++..+..+++++|++ .+++.|++ ..++.++.+|+.+. .+ .||+|++....
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~d~p~ 196 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIMGYVH 196 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEECCCS
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEECCcc
Confidence 456789999999999999999999888899999994 58877762 35789999999653 22 49999986543
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 018205 263 HAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINE 299 (359)
Q Consensus 263 ~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~ 299 (359)
...++++++.+.|+| ||.+++......+
T Consensus 197 ------~~~~~l~~~~~~Lkp---gG~l~~s~~~~~~ 224 (272)
T 3a27_A 197 ------KTHKFLDKTFEFLKD---RGVIHYHETVAEK 224 (272)
T ss_dssp ------SGGGGHHHHHHHEEE---EEEEEEEEEEEGG
T ss_pred ------cHHHHHHHHHHHcCC---CCEEEEEEcCccc
Confidence 234589999999999 8888877765543
No 224
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=98.80 E-value=7.2e-09 Score=91.49 Aligned_cols=89 Identities=11% Similarity=0.089 Sum_probs=71.7
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC----------CCCceEeeCCCCCCCCCccEEEEcch
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD----------TDNLKFIAGDMFQSIPPADAFFFKAI 261 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~----------~~~v~~~~~d~~~~~p~~D~i~~~~v 261 (359)
+.+.+|||||||+|.++..+++. + .+++++|++ .+++.|++ .++++++.+|..+....||+|++.
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~~~fD~Ii~d-- 146 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIFCL-- 146 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCCCCEEEEEES--
T ss_pred CCCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHHhhCCEEEEC--
Confidence 35689999999999999999987 7 899999995 48888763 358999999986533459999985
Q ss_pred hccCCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 018205 262 FHAFVDEDCLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 262 l~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
.+++. .+++.++++|+| ||.+++.
T Consensus 147 ---~~dp~--~~~~~~~~~L~p---gG~lv~~ 170 (262)
T 2cmg_A 147 ---QEPDI--HRIDGLKRMLKE---DGVFISV 170 (262)
T ss_dssp ---SCCCH--HHHHHHHTTEEE---EEEEEEE
T ss_pred ---CCChH--HHHHHHHHhcCC---CcEEEEE
Confidence 23443 399999999999 7777764
No 225
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=98.79 E-value=1.6e-08 Score=85.84 Aligned_cols=88 Identities=15% Similarity=0.123 Sum_probs=68.5
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----CCCceEeeCCCCCCCCCccEEEEcchhccCC
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----TDNLKFIAGDMFQSIPPADAFFFKAIFHAFV 266 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----~~~v~~~~~d~~~~~p~~D~i~~~~vl~~~~ 266 (359)
.+..+|||+|||+|.++..+++.. ..+++++|++. +++.++. ..+++++.+|+.+-...||+|+++-.+|...
T Consensus 48 ~~~~~vlD~g~G~G~~~~~l~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~D~v~~~~p~~~~~ 126 (207)
T 1wy7_A 48 IEGKVVADLGAGTGVLSYGALLLG-AKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPFGSQR 126 (207)
T ss_dssp STTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCCSSSS
T ss_pred CCcCEEEEeeCCCCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcCCCCCEEEEcCCCcccc
Confidence 356899999999999999998873 33799999954 7776652 1179999999955223599999998888776
Q ss_pred chHHHHHHHHHHHhc
Q 018205 267 DEDCLKILKRCREAI 281 (359)
Q Consensus 267 ~~~~~~~L~~~~~~L 281 (359)
......+++++.+++
T Consensus 127 ~~~~~~~l~~~~~~l 141 (207)
T 1wy7_A 127 KHADRPFLLKAFEIS 141 (207)
T ss_dssp TTTTHHHHHHHHHHC
T ss_pred CCchHHHHHHHHHhc
Confidence 555567888888886
No 226
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=98.79 E-value=3.3e-08 Score=93.42 Aligned_cols=105 Identities=11% Similarity=0.124 Sum_probs=77.5
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeecc-cccccCCCCCCceEeeCCCCCCC--CCccEEEE
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDLP-HVVPKVPDTDNLKFIAGDMFQSI--PPADAFFF 258 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~-~~~~~a~~~~~v~~~~~d~~~~~--p~~D~i~~ 258 (359)
.+++.+. ..+..+|||+|||+|.++..+++++ +..+++++|++ .+++.| .+++++++|+++.. ..||+|++
T Consensus 30 ~~~~~~~--~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---~~~~~~~~D~~~~~~~~~fD~Ii~ 104 (421)
T 2ih2_A 30 FMVSLAE--APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---PWAEGILADFLLWEPGEAFDLILG 104 (421)
T ss_dssp HHHHHCC--CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---TTEEEEESCGGGCCCSSCEEEEEE
T ss_pred HHHHhhc--cCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---CCCcEEeCChhhcCccCCCCEEEE
Confidence 4444444 2345699999999999999999886 67899999995 588877 68999999997643 35999999
Q ss_pred cchhc----------cCCchH-----------------HHHHHHHHHHhcccCCCCcEEEEEee
Q 018205 259 KAIFH----------AFVDED-----------------CLKILKRCREAIASRGDRGKVIIIDI 295 (359)
Q Consensus 259 ~~vl~----------~~~~~~-----------------~~~~L~~~~~~L~p~~~gG~lli~~~ 295 (359)
+--.. ++.++. ...+++++.++|+| ||.++++.+
T Consensus 105 NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~---~G~~~~i~p 165 (421)
T 2ih2_A 105 NPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKP---GGVLVFVVP 165 (421)
T ss_dssp CCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred CcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCC---CCEEEEEEC
Confidence 52111 122221 12579999999999 898888664
No 227
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=98.79 E-value=5.5e-09 Score=88.36 Aligned_cols=88 Identities=17% Similarity=0.233 Sum_probs=64.8
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC-CCCceEeeCCCCCCCCCccEEEEcchhccCCchHH
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD-TDNLKFIAGDMFQSIPPADAFFFKAIFHAFVDEDC 270 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~-~~~v~~~~~d~~~~~p~~D~i~~~~vl~~~~~~~~ 270 (359)
.+..+|||+|||+|.++..+++. +..+++++|++ .+++.|+. ..+++++.+|+.+-...||+|+++..+|++.+...
T Consensus 50 ~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~D~v~~~~p~~~~~~~~~ 128 (200)
T 1ne2_A 50 IGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCGGVNFMVADVSEISGKYDTWIMNPPFGSVVKHSD 128 (200)
T ss_dssp SBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCCCCEEEEEECCCC-------C
T ss_pred CCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHHCCCCeeEEEECCCchhccCchh
Confidence 35689999999999999999887 44579999995 48877763 22899999999552235999999999998876444
Q ss_pred HHHHHHHHHhc
Q 018205 271 LKILKRCREAI 281 (359)
Q Consensus 271 ~~~L~~~~~~L 281 (359)
.++++++.+.+
T Consensus 129 ~~~l~~~~~~~ 139 (200)
T 1ne2_A 129 RAFIDKAFETS 139 (200)
T ss_dssp HHHHHHHHHHE
T ss_pred HHHHHHHHHhc
Confidence 56888888876
No 228
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=98.78 E-value=1e-10 Score=102.15 Aligned_cols=135 Identities=14% Similarity=0.157 Sum_probs=93.6
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCCCCC--CccEEEEcchhc
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQSIP--PADAFFFKAIFH 263 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~~~p--~~D~i~~~~vl~ 263 (359)
+..+|||+|||+|.++..+++. +.+++++|++. +++.|+. .++++++.+|+.+..+ .||+|++...+|
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~ 155 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALT--GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWG 155 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCCS
T ss_pred CCCEEEECccccCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCcC
Confidence 5789999999999999999987 47999999955 8887762 1589999999955222 599999999998
Q ss_pred cCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCcee
Q 018205 264 AFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHF 343 (359)
Q Consensus 264 ~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~ 343 (359)
+..+.. ..+.+++++|+| ||.+++ +...... -+... .-....+.+++..++...|...+
T Consensus 156 ~~~~~~--~~~~~~~~~L~p---gG~~i~-~~~~~~~------------~~~~~---~lp~~~~~~~~~~~l~~~g~~~i 214 (241)
T 3gdh_A 156 GPDYAT--AETFDIRTMMSP---DGFEIF-RLSKKIT------------NNIVY---FLPRNADIDQVASLAGPGGQVEI 214 (241)
T ss_dssp SGGGGG--SSSBCTTTSCSS---CHHHHH-HHHHHHC------------SCEEE---EEETTBCHHHHHHTTCTTCCEEE
T ss_pred Ccchhh--hHHHHHHhhcCC---cceeHH-HHHHhhC------------CceEE---ECCCCCCHHHHHHHhccCCCEEE
Confidence 876553 377789999999 887444 2111000 00000 00123467788888888787666
Q ss_pred EEEEeCCc
Q 018205 344 KITPVYGI 351 (359)
Q Consensus 344 ~~~~~~~~ 351 (359)
......+.
T Consensus 215 ~~~~~~~~ 222 (241)
T 3gdh_A 215 EQNFLNNK 222 (241)
T ss_dssp EEEEETTE
T ss_pred EehhhcCc
Confidence 55555443
No 229
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=98.76 E-value=3.1e-08 Score=94.43 Aligned_cols=104 Identities=14% Similarity=0.178 Sum_probs=79.0
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCC-CeEEEeeccc-ccccCCC------CCCceEeeCCCCCC---CC--CccEEEE
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPG-IKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQS---IP--PADAFFF 258 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~~---~p--~~D~i~~ 258 (359)
..+..+|||+|||+|..+..+++..++ .+++++|++. +++.+++ ..+++++.+|+.+. ++ .||+|++
T Consensus 257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~ 336 (450)
T 2yxl_A 257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLL 336 (450)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEE
Confidence 456789999999999999999999876 7999999954 6765542 34799999998652 33 3999996
Q ss_pred ------cchhccCCch-------HH-------HHHHHHHHHhcccCCCCcEEEEEeeecC
Q 018205 259 ------KAIFHAFVDE-------DC-------LKILKRCREAIASRGDRGKVIIIDIVIN 298 (359)
Q Consensus 259 ------~~vl~~~~~~-------~~-------~~~L~~~~~~L~p~~~gG~lli~~~~~~ 298 (359)
..+++..++. +. .++|+++.++|+| ||.+++.+....
T Consensus 337 D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp---GG~lvy~tcs~~ 393 (450)
T 2yxl_A 337 DAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKP---GGRLLYTTCSIF 393 (450)
T ss_dssp ECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEE---EEEEEEEESCCC
T ss_pred cCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeCCCC
Confidence 3445443332 11 5789999999999 899988776654
No 230
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=98.75 E-value=2.4e-09 Score=96.47 Aligned_cols=97 Identities=11% Similarity=0.123 Sum_probs=70.8
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC----------CCCceEeeCCCCCC---C-CCccEEEE
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD----------TDNLKFIAGDMFQS---I-PPADAFFF 258 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~----------~~~v~~~~~d~~~~---~-p~~D~i~~ 258 (359)
.+.+|||||||+|..+..+++..|..+++++|++. +++.|++ .++++++.+|+.+. . ..||+|++
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 169 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 169 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence 45899999999999999999887788999999954 7776552 46899999997442 2 24999997
Q ss_pred cchhccCCch---HHHHHHHHHHHhcccCCCCcEEEEE
Q 018205 259 KAIFHAFVDE---DCLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 259 ~~vl~~~~~~---~~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
...-+..... ...+++++++++|+| ||.+++.
T Consensus 170 d~~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~ 204 (296)
T 1inl_A 170 DSTDPTAGQGGHLFTEEFYQACYDALKE---DGVFSAE 204 (296)
T ss_dssp EC----------CCSHHHHHHHHHHEEE---EEEEEEE
T ss_pred cCCCcccCchhhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence 4322201110 125699999999999 7777764
No 231
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=98.74 E-value=1.9e-08 Score=93.60 Aligned_cols=120 Identities=18% Similarity=0.171 Sum_probs=87.3
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCC-CCC--CccEEEEcch
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQ-SIP--PADAFFFKAI 261 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~-~~p--~~D~i~~~~v 261 (359)
.+..+|||+|||+|.++..++...+..+++++|++. +++.|+. .+++++..+|+.+ +.+ .||+|+++-.
T Consensus 216 ~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~npP 295 (373)
T 3tm4_A 216 LDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNLP 295 (373)
T ss_dssp CCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEECC
T ss_pred CCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECCC
Confidence 467899999999999999999988766899999954 8887772 2589999999965 333 4999999654
Q ss_pred hccCC------chHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHH
Q 018205 262 FHAFV------DEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLF 335 (359)
Q Consensus 262 l~~~~------~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll 335 (359)
++... .+-..++++.++++| + |+.+++.. +.+.+.+.+
T Consensus 296 yg~r~~~~~~~~~ly~~~~~~l~r~l-~---g~~~~i~~--------------------------------~~~~~~~~~ 339 (373)
T 3tm4_A 296 YGLKIGKKSMIPDLYMKFFNELAKVL-E---KRGVFITT--------------------------------EKKAIEEAI 339 (373)
T ss_dssp CC------CCHHHHHHHHHHHHHHHE-E---EEEEEEES--------------------------------CHHHHHHHH
T ss_pred CCcccCcchhHHHHHHHHHHHHHHHc-C---CeEEEEEC--------------------------------CHHHHHHHH
Confidence 33211 111257889999988 5 34444421 234566788
Q ss_pred HHcCCceeEEEEe
Q 018205 336 LDAGFSHFKITPV 348 (359)
Q Consensus 336 ~~aGf~~~~~~~~ 348 (359)
.+.||+..+...+
T Consensus 340 ~~~G~~~~~~~~~ 352 (373)
T 3tm4_A 340 AENGFEIIHHRVI 352 (373)
T ss_dssp HHTTEEEEEEEEE
T ss_pred HHcCCEEEEEEEE
Confidence 8999998887776
No 232
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=98.71 E-value=3.5e-08 Score=90.14 Aligned_cols=96 Identities=15% Similarity=0.226 Sum_probs=72.1
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CC-CceEeeCCCCCC-------CCCccEEE
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TD-NLKFIAGDMFQS-------IPPADAFF 257 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~-~v~~~~~d~~~~-------~p~~D~i~ 257 (359)
+..+|||+|||+|.++..+++. +.+++++|++. +++.|++ .+ +++++++|+++. ...||+|+
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~--ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii 230 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 230 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCCcEEEcccccCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence 4579999999999999999986 44999999955 8887762 22 599999998652 12599999
Q ss_pred Ecch----------hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 258 FKAI----------FHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 258 ~~~v----------l~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
+.-- ++. .++...+++++.++|+| ||.+++....
T Consensus 231 ~dPP~~~~~~~~~~~~~--~~~~~~ll~~~~~~Lkp---gG~lli~~~~ 274 (332)
T 2igt_A 231 TDPPKFGRGTHGEVWQL--FDHLPLMLDICREILSP---KALGLVLTAY 274 (332)
T ss_dssp ECCCSEEECTTCCEEEH--HHHHHHHHHHHHHTBCT---TCCEEEEEEC
T ss_pred ECCccccCCchHHHHHH--HHHHHHHHHHHHHhcCc---CcEEEEEECC
Confidence 8321 111 13456799999999999 8887765544
No 233
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=98.68 E-value=2.5e-08 Score=88.77 Aligned_cols=105 Identities=9% Similarity=0.081 Sum_probs=76.2
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCC-CeEEEeeccc-ccccCCC------CCCceEeeCCCCC-C------CCCccEE
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPG-IKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQ-S------IPPADAF 256 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~-~------~p~~D~i 256 (359)
..+..+|||+|||+|..+..+++..++ .+++++|++. +++.+++ ..+++++.+|+.+ . ...||+|
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 160 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKI 160 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEE
Confidence 455789999999999999999998876 7999999954 7776552 3479999999854 1 2359999
Q ss_pred EEc------chhcc---CCc-------hHHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 018205 257 FFK------AIFHA---FVD-------EDCLKILKRCREAIASRGDRGKVIIIDIVINE 299 (359)
Q Consensus 257 ~~~------~vl~~---~~~-------~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~ 299 (359)
++. .+++. +.. ....++|+++.++|+| ||.+++.......
T Consensus 161 l~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lv~stcs~~~ 216 (274)
T 3ajd_A 161 LLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKK---DGELVYSTCSMEV 216 (274)
T ss_dssp EEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEE---EEEEEEEESCCCT
T ss_pred EEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCC---CCEEEEEECCCCh
Confidence 976 22221 111 1235799999999999 8888887765543
No 234
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=98.67 E-value=5e-08 Score=86.46 Aligned_cols=120 Identities=11% Similarity=0.070 Sum_probs=86.3
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCCC-------CCCceEeeCCCCCCCC--CccEEEEcch
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVPD-------TDNLKFIAGDMFQSIP--PADAFFFKAI 261 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~~p--~~D~i~~~~v 261 (359)
..++.+|||+|||+|.++..+++.. ..+++++|+ |..++.+++ .++++++.+|..+-.+ .||.|++...
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~g-~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~~p 201 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred cCCCCEEEEecCcCcHHHHHHHHhc-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEECCC
Confidence 3467899999999999999998874 568999999 457776652 5789999999965332 4999987532
Q ss_pred hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCc
Q 018205 262 FHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFS 341 (359)
Q Consensus 262 l~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~ 341 (359)
. ....+|..+.++|++ ||.|.+.+....+.. .....+.++++..+.|+.
T Consensus 202 ~------~~~~~l~~a~~~lk~---gG~ih~~~~~~e~~~----------------------~~~~~e~i~~~~~~~g~~ 250 (278)
T 3k6r_A 202 V------RTHEFIPKALSIAKD---GAIIHYHNTVPEKLM----------------------PREPFETFKRITKEYGYD 250 (278)
T ss_dssp S------SGGGGHHHHHHHEEE---EEEEEEEEEEEGGGT----------------------TTTTHHHHHHHHHHTTCE
T ss_pred C------cHHHHHHHHHHHcCC---CCEEEEEeeeccccc----------------------chhHHHHHHHHHHHcCCc
Confidence 1 123588889999999 887777655432211 112346677888899987
Q ss_pred ee
Q 018205 342 HF 343 (359)
Q Consensus 342 ~~ 343 (359)
+.
T Consensus 251 v~ 252 (278)
T 3k6r_A 251 VE 252 (278)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 235
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=98.66 E-value=2e-08 Score=90.55 Aligned_cols=97 Identities=16% Similarity=0.290 Sum_probs=67.9
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCC-CCCCc
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQ-SIPPA 253 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~-~~p~~ 253 (359)
..+++.+. ..+..+|||||||+|.++..+++. ..+++++|++. +++.+++ .++++++.+|+.+ +.+.|
T Consensus 32 ~~i~~~~~--~~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~ 107 (299)
T 2h1r_A 32 DKIIYAAK--IKSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFPKF 107 (299)
T ss_dssp HHHHHHHC--CCTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCCCC
T ss_pred HHHHHhcC--CCCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcccC
Confidence 44555555 456789999999999999999987 56899999954 7776652 3689999999966 45679
Q ss_pred cEEEEcchhccCCchHHHHHH---------------HHHHHhccc
Q 018205 254 DAFFFKAIFHAFVDEDCLKIL---------------KRCREAIAS 283 (359)
Q Consensus 254 D~i~~~~vl~~~~~~~~~~~L---------------~~~~~~L~p 283 (359)
|+|+++- -+++..+....++ ..+.+++++
T Consensus 108 D~Vv~n~-py~~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~ 151 (299)
T 2h1r_A 108 DVCTANI-PYKISSPLIFKLISHRPLFKCAVLMFQKEFAERMLAN 151 (299)
T ss_dssp SEEEEEC-CGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCC
T ss_pred CEEEEcC-CcccccHHHHHHHhcCCccceeeehHHHHHHHHHhcC
Confidence 9999854 4456555555555 336677877
No 236
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=98.63 E-value=3.3e-08 Score=86.41 Aligned_cols=104 Identities=15% Similarity=0.247 Sum_probs=72.2
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC----CCCceEeeCCCCC-CCC---C
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD----TDNLKFIAGDMFQ-SIP---P 252 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~----~~~v~~~~~d~~~-~~p---~ 252 (359)
..+++.+. ..+..+|||||||+|.++..+++.. .+++++|++ .+++.+++ .++++++.+|+.+ +++ .
T Consensus 19 ~~i~~~~~--~~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~ 94 (245)
T 1yub_A 19 NQIIKQLN--LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQR 94 (245)
T ss_dssp HHHHHHCC--CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSE
T ss_pred HHHHHhcC--CCCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCCC
Confidence 45666665 5567899999999999999999984 789999995 48888874 3579999999966 343 2
Q ss_pred ccEEEEcchhccCCchHHHH----------HH----HHHHHhcccCCCCcEEEEEe
Q 018205 253 ADAFFFKAIFHAFVDEDCLK----------IL----KRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 253 ~D~i~~~~vl~~~~~~~~~~----------~L----~~~~~~L~p~~~gG~lli~~ 294 (359)
| .|++ +.-++...+.... ++ +.+.++|+| ||.+.+..
T Consensus 95 f-~vv~-n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~---~G~l~v~~ 145 (245)
T 1yub_A 95 Y-KIVG-NIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDI---HRTLGLLL 145 (245)
T ss_dssp E-EEEE-ECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCG---GGSHHHHT
T ss_pred c-EEEE-eCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCC---CCchhhhh
Confidence 6 4444 3222222222222 33 668899998 78766543
No 237
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=98.62 E-value=2.3e-08 Score=92.03 Aligned_cols=99 Identities=10% Similarity=0.167 Sum_probs=77.7
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCC-----CeEEEeecc-cccccCCC-----CCCceEeeCCCCCCCC--CccEEEEcc
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPG-----IKCTVLDLP-HVVPKVPD-----TDNLKFIAGDMFQSIP--PADAFFFKA 260 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~-----~~~~~~D~~-~~~~~a~~-----~~~v~~~~~d~~~~~p--~~D~i~~~~ 260 (359)
+..+|||+|||+|.++..+++..+. .+++|+|++ .+++.|+. ..++.+..+|.+.+.+ .||+|+++-
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~~~~~fD~Ii~NP 209 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISDL 209 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEEC
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCccccCCccEEEECC
Confidence 4579999999999999999988754 689999995 47777662 2368999999977543 599999987
Q ss_pred hhccCCchHH----------------HHHHHHHHHhcccCCCCcEEEEEee
Q 018205 261 IFHAFVDEDC----------------LKILKRCREAIASRGDRGKVIIIDI 295 (359)
Q Consensus 261 vl~~~~~~~~----------------~~~L~~~~~~L~p~~~gG~lli~~~ 295 (359)
.+++++.++. ..+++++.+.|+| ||.++++.+
T Consensus 210 Pfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~---gG~~~~v~p 257 (344)
T 2f8l_A 210 PVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKP---GGYLFFLVP 257 (344)
T ss_dssp CCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred CCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCC---CCEEEEEEC
Confidence 7766654332 2589999999999 888888663
No 238
>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}
Probab=98.59 E-value=1.2e-06 Score=80.79 Aligned_cols=152 Identities=15% Similarity=0.192 Sum_probs=94.6
Q ss_pred CCCeEEEeCCCcchHHHHH--------HHHC-------CCCeEEEeeccc-c-------cccCCC-----------C-C-
Q 018205 194 GLGSLVDVGGGTGSFARII--------SEAF-------PGIKCTVLDLPH-V-------VPKVPD-----------T-D- 237 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l--------~~~~-------p~~~~~~~D~~~-~-------~~~a~~-----------~-~- 237 (359)
+..+|+|+|||+|..+..+ .+++ |..++..-|+|. . +....+ . .
T Consensus 52 ~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~ 131 (374)
T 3b5i_A 52 PPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRS 131 (374)
T ss_dssp CCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBC
T ss_pred CceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCc
Confidence 3689999999999877766 3333 778999999965 3 222211 0 1
Q ss_pred -CceEeeCCCCC-CCC--CccEEEEcchhccCCch------------------------------------HHHHHHHHH
Q 018205 238 -NLKFIAGDMFQ-SIP--PADAFFFKAIFHAFVDE------------------------------------DCLKILKRC 277 (359)
Q Consensus 238 -~v~~~~~d~~~-~~p--~~D~i~~~~vl~~~~~~------------------------------------~~~~~L~~~ 277 (359)
-+.-+.+.|.. .+| .+|+|+++.+||.+++. +...+|+..
T Consensus 132 ~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~r 211 (374)
T 3b5i_A 132 YFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRAR 211 (374)
T ss_dssp SEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 12334556655 456 49999999999987621 345679999
Q ss_pred HHhcccCCCCcEEEEEeeecCCCCcch--HHHHHH------Hhhhhhhh-----h-----hcCCcccCHHHHHHHHH-Hc
Q 018205 278 REAIASRGDRGKVIIIDIVINEKKEDA--QLTEAK------LLYDMLMM-----V-----AVRGSERTEKEWEKLFL-DA 338 (359)
Q Consensus 278 ~~~L~p~~~gG~lli~~~~~~~~~~~~--~~~~~~------~~~~~~~~-----~-----~~~g~~~t~~~~~~ll~-~a 338 (359)
++.|+| ||++++.-....+..... ...... .+.++... . ......++.+|++++++ +.
T Consensus 212 a~eL~p---GG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P~y~ps~~E~~~~l~~~~ 288 (374)
T 3b5i_A 212 AAEVKR---GGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANG 288 (374)
T ss_dssp HHHEEE---EEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCCBCCCCHHHHHHHHHHHC
T ss_pred HHHhCC---CCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccCCccccCCCHHHHHHHHHhcC
Confidence 999999 888888776655432100 000000 01111000 0 00123579999999998 58
Q ss_pred CCceeEEEEe
Q 018205 339 GFSHFKITPV 348 (359)
Q Consensus 339 Gf~~~~~~~~ 348 (359)
||++.++...
T Consensus 289 ~F~I~~le~~ 298 (374)
T 3b5i_A 289 SFAIDKLVVY 298 (374)
T ss_dssp SEEEEEEEEE
T ss_pred CcEEEEEEEE
Confidence 9998777654
No 239
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=98.59 E-value=1.4e-07 Score=89.31 Aligned_cols=104 Identities=16% Similarity=0.184 Sum_probs=78.1
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----CCCceEeeCCCCCC---CC--CccEEEE--
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----TDNLKFIAGDMFQS---IP--PADAFFF-- 258 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----~~~v~~~~~d~~~~---~p--~~D~i~~-- 258 (359)
..+..+|||+|||+|..+..+++..++.+++++|++. +++.+++ ..+++++.+|+.+. ++ .||+|++
T Consensus 244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 323 (429)
T 1sqg_A 244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA 323 (429)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeC
Confidence 4567899999999999999999999888999999954 7766552 23588999998652 22 4999996
Q ss_pred ----cchhccCCch-------HH-------HHHHHHHHHhcccCCCCcEEEEEeeecC
Q 018205 259 ----KAIFHAFVDE-------DC-------LKILKRCREAIASRGDRGKVIIIDIVIN 298 (359)
Q Consensus 259 ----~~vl~~~~~~-------~~-------~~~L~~~~~~L~p~~~gG~lli~~~~~~ 298 (359)
..++++.++. +. .++|+++.+.|+| ||.+++.+....
T Consensus 324 Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~Lkp---GG~lvystcs~~ 378 (429)
T 1sqg_A 324 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKT---GGTLVYATCSVL 378 (429)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEE---EEEEEEEESCCC
T ss_pred CCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEECCCC
Confidence 2344443331 11 4789999999999 898888776554
No 240
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=98.54 E-value=2.9e-08 Score=92.70 Aligned_cols=98 Identities=14% Similarity=0.165 Sum_probs=70.7
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CC-CceEeeCCCCCCC-------CCccEE
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TD-NLKFIAGDMFQSI-------PPADAF 256 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~-~v~~~~~d~~~~~-------p~~D~i 256 (359)
.+..+|||+|||+|.++..+++.. ..+++++|++. +++.|++ .+ +++++++|+++.. ..||+|
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~I 289 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 289 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEE
Confidence 356899999999999999999863 23899999954 8887762 22 8999999985421 259999
Q ss_pred EEcchh-----ccCC--chHHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 257 FFKAIF-----HAFV--DEDCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 257 ~~~~vl-----~~~~--~~~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
++.--. .... .....++++.+.++|+| ||.+++..
T Consensus 290 i~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~p---gG~l~~~~ 331 (385)
T 2b78_A 290 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSE---NGLIIAST 331 (385)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred EECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCC---CcEEEEEe
Confidence 984222 1121 13345688899999999 77766654
No 241
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=98.53 E-value=1.1e-07 Score=83.17 Aligned_cols=80 Identities=19% Similarity=0.383 Sum_probs=57.2
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC----CCCCceEeeCCCCC-CCC-Ccc
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP----DTDNLKFIAGDMFQ-SIP-PAD 254 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~----~~~~v~~~~~d~~~-~~p-~~D 254 (359)
..+++.+. ..+..+|||||||+|.++..++++. .+++++|++. +++.++ ..++++++.+|+.+ +++ ..+
T Consensus 20 ~~i~~~~~--~~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~ 95 (244)
T 1qam_A 20 DKIMTNIR--LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQS 95 (244)
T ss_dssp HHHHTTCC--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCC
T ss_pred HHHHHhCC--CCCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccCCC
Confidence 34555555 4567899999999999999999985 6899999954 777655 23689999999965 444 233
Q ss_pred EEEEcchhccC
Q 018205 255 AFFFKAIFHAF 265 (359)
Q Consensus 255 ~i~~~~vl~~~ 265 (359)
..++++.-+++
T Consensus 96 ~~vv~nlPy~~ 106 (244)
T 1qam_A 96 YKIFGNIPYNI 106 (244)
T ss_dssp CEEEEECCGGG
T ss_pred eEEEEeCCccc
Confidence 34444444444
No 242
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=98.50 E-value=1.1e-07 Score=90.32 Aligned_cols=103 Identities=8% Similarity=0.075 Sum_probs=75.6
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCC-CeEEEeeccc-ccccCCC------CCCceEeeCCCCC-C--CC-CccEEEE-
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPG-IKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQ-S--IP-PADAFFF- 258 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~-~--~p-~~D~i~~- 258 (359)
..+..+|||+|||+|..+..+++..++ .+++++|++. +++.+++ .. +.++.+|..+ . .+ .||+|++
T Consensus 99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~~~~FD~Il~D 177 (464)
T 3m6w_A 99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGTYFHRVLLD 177 (464)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHHCSCEEEEEEE
T ss_pred cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhccccCCEEEEC
Confidence 456789999999999999999998765 6899999954 7776652 33 8999999744 1 23 4999995
Q ss_pred ---c--chhc-------cCCchHH-------HHHHHHHHHhcccCCCCcEEEEEeeecC
Q 018205 259 ---K--AIFH-------AFVDEDC-------LKILKRCREAIASRGDRGKVIIIDIVIN 298 (359)
Q Consensus 259 ---~--~vl~-------~~~~~~~-------~~~L~~~~~~L~p~~~gG~lli~~~~~~ 298 (359)
+ .+++ .+..++. .++|+++.++|+| ||.+++.+....
T Consensus 178 ~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp---GG~LvysTCs~~ 233 (464)
T 3m6w_A 178 APCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGP---GGVLVYSTCTFA 233 (464)
T ss_dssp CCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEE---EEEEEEEESCCC
T ss_pred CCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeccCc
Confidence 1 2222 2322222 6799999999999 888887765543
No 243
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=98.46 E-value=1.7e-06 Score=82.04 Aligned_cols=97 Identities=11% Similarity=0.154 Sum_probs=67.0
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCCCCC----
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQSIP---- 251 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~~~p---- 251 (359)
.+++.+. ..+..+|||+|||+|.++..+++. ..+++++|++. +++.|+. ..+++++.+|+.+.++
T Consensus 277 ~~~~~l~--~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~ 352 (433)
T 1uwv_A 277 RALEWLD--VQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPW 352 (433)
T ss_dssp HHHHHHT--CCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGG
T ss_pred HHHHhhc--CCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhh
Confidence 3444444 455689999999999999999987 67899999954 8887762 3479999999966321
Q ss_pred ---CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEE
Q 018205 252 ---PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 252 ---~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli 292 (359)
.||+|++.- +......+++.+.+ ++| ++.+++
T Consensus 353 ~~~~fD~Vv~dP-----Pr~g~~~~~~~l~~-~~p---~~ivyv 387 (433)
T 1uwv_A 353 AKNGFDKVLLDP-----ARAGAAGVMQQIIK-LEP---IRIVYV 387 (433)
T ss_dssp GTTCCSEEEECC-----CTTCCHHHHHHHHH-HCC---SEEEEE
T ss_pred hcCCCCEEEECC-----CCccHHHHHHHHHh-cCC---CeEEEE
Confidence 499999742 21112235555554 677 454444
No 244
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=98.46 E-value=1.2e-07 Score=88.83 Aligned_cols=97 Identities=11% Similarity=0.067 Sum_probs=71.5
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------C-C-CceEeeCCCCCCC-------CCccEEE
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------T-D-NLKFIAGDMFQSI-------PPADAFF 257 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~-~-~v~~~~~d~~~~~-------p~~D~i~ 257 (359)
+..+|||+|||+|.++..+++.. ..+++++|++. +++.|++ . . +++++.+|+++.. ..||+|+
T Consensus 220 ~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii 298 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_dssp TTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence 56899999999999999999874 45899999954 8777662 2 3 7899999985521 2599999
Q ss_pred EcchhccC-------CchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 258 FKAIFHAF-------VDEDCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 258 ~~~vl~~~-------~~~~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
+.--.... .......++.++.+.|+| ||.+++..
T Consensus 299 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~ 339 (396)
T 3c0k_A 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNE---GGILLTFS 339 (396)
T ss_dssp ECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred ECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEe
Confidence 85321100 013456799999999999 77777655
No 245
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=98.45 E-value=6.1e-07 Score=85.83 Aligned_cols=103 Identities=16% Similarity=0.195 Sum_probs=76.6
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCC-CCeEEEeeccc-ccccCCC------CCCceEeeCCCCC-C--CC-CccEEEEc--
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFP-GIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQ-S--IP-PADAFFFK-- 259 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~-~--~p-~~D~i~~~-- 259 (359)
+..+|||+|||+|..+..+++..+ ..+++++|++. +++.+++ ..++.++.+|..+ + .+ .||+|++.
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P 196 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP 196 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence 678999999999999999999875 47999999954 7776652 3579999999855 1 33 49999972
Q ss_pred ----chhc-------cCCchH-------HHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 018205 260 ----AIFH-------AFVDED-------CLKILKRCREAIASRGDRGKVIIIDIVINE 299 (359)
Q Consensus 260 ----~vl~-------~~~~~~-------~~~~L~~~~~~L~p~~~gG~lli~~~~~~~ 299 (359)
.++. +|..++ ..++|+++.++|+| ||.+++.+.....
T Consensus 197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp---GG~LvysTcs~~~ 251 (479)
T 2frx_A 197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRP---GGTLVYSTCTLNQ 251 (479)
T ss_dssp CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEESCCSS
T ss_pred cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCC---CCEEEEecccCCc
Confidence 2232 233222 24689999999999 8888887765543
No 246
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=98.44 E-value=3e-07 Score=82.24 Aligned_cols=76 Identities=16% Similarity=0.295 Sum_probs=60.4
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC----CCCceEeeCCCCC-CCCC--c
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD----TDNLKFIAGDMFQ-SIPP--A 253 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~----~~~v~~~~~d~~~-~~p~--~ 253 (359)
..+++.+. ..+..+|||||||+|.++..+++. ..+++++|++ .+++.+++ .++++++.+|+.+ +++. |
T Consensus 40 ~~Iv~~l~--~~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~f 115 (295)
T 3gru_A 40 NKAVESAN--LTKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLDF 115 (295)
T ss_dssp HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSCC
T ss_pred HHHHHhcC--CCCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCCc
Confidence 45556555 556789999999999999999998 5689999995 48877763 4789999999976 5554 9
Q ss_pred cEEEEcch
Q 018205 254 DAFFFKAI 261 (359)
Q Consensus 254 D~i~~~~v 261 (359)
|+|+++.-
T Consensus 116 D~Iv~NlP 123 (295)
T 3gru_A 116 NKVVANLP 123 (295)
T ss_dssp SEEEEECC
T ss_pred cEEEEeCc
Confidence 99997643
No 247
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=98.43 E-value=1.8e-07 Score=85.63 Aligned_cols=94 Identities=15% Similarity=0.196 Sum_probs=72.8
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC-------CCCceEeeCCCCCCCCCccEEEEcchhcc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD-------TDNLKFIAGDMFQSIPPADAFFFKAIFHA 264 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~-------~~~v~~~~~d~~~~~p~~D~i~~~~vl~~ 264 (359)
.+..+|||+|||+|.++.. ++ ...+++++|++ .+++.|++ .++++++.+|+++....||+|++.---
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~~~fD~Vi~dpP~-- 268 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDVKGNRVIMNLPK-- 268 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCCCCEEEEEECCTT--
T ss_pred CCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhcCCCcEEEECCcH--
Confidence 4578999999999999999 76 47799999995 48777662 257999999996644569999985211
Q ss_pred CCchHHHHHHHHHHHhcccCCCCcEEEEEeeecC
Q 018205 265 FVDEDCLKILKRCREAIASRGDRGKVIIIDIVIN 298 (359)
Q Consensus 265 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~ 298 (359)
. ...+++.+.++|+| ||.+++.+....
T Consensus 269 ~----~~~~l~~~~~~L~~---gG~l~~~~~~~~ 295 (336)
T 2yx1_A 269 F----AHKFIDKALDIVEE---GGVIHYYTIGKD 295 (336)
T ss_dssp T----GGGGHHHHHHHEEE---EEEEEEEEEESS
T ss_pred h----HHHHHHHHHHHcCC---CCEEEEEEeecC
Confidence 1 12589999999999 888888776544
No 248
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=98.42 E-value=2.8e-07 Score=87.40 Aligned_cols=104 Identities=12% Similarity=0.144 Sum_probs=74.8
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCC-CeEEEeeccc-ccccCCC------CCCceEeeCCCCC-C--CC-CccEEEEc
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPG-IKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQ-S--IP-PADAFFFK 259 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~-~--~p-~~D~i~~~ 259 (359)
..+..+|||+|||+|..+..+++..++ .+++++|++. +++.+++ ..++.++.+|..+ . .+ .||+|++.
T Consensus 103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~D 182 (456)
T 3m4x_A 103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVD 182 (456)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEEC
Confidence 456789999999999999999988654 6899999954 7766552 3568999999843 1 23 49999973
Q ss_pred c------hhcc-------CCchH-------HHHHHHHHHHhcccCCCCcEEEEEeeecC
Q 018205 260 A------IFHA-------FVDED-------CLKILKRCREAIASRGDRGKVIIIDIVIN 298 (359)
Q Consensus 260 ~------vl~~-------~~~~~-------~~~~L~~~~~~L~p~~~gG~lli~~~~~~ 298 (359)
- ++.. +..++ ..++|+++.++|+| ||.|++.+....
T Consensus 183 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp---GG~LvYsTCs~~ 238 (456)
T 3m4x_A 183 APCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKN---KGQLIYSTCTFA 238 (456)
T ss_dssp CCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEE---EEEEEEEESCCC
T ss_pred CCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEEeecc
Confidence 1 2221 21111 12789999999999 888887766554
No 249
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=98.37 E-value=1.6e-07 Score=88.06 Aligned_cols=99 Identities=16% Similarity=0.149 Sum_probs=73.1
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCCC-------CCCccEEEE
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQS-------IPPADAFFF 258 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~~-------~p~~D~i~~ 258 (359)
+..+|||+|||+|.++..+++. +..+++++|++. +++.|++ .++++++.+|+++. ...||+|++
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 5789999999999999999986 344899999954 8877662 12799999998542 125999998
Q ss_pred cchhccCCc-------hHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 259 KAIFHAFVD-------EDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 259 ~~vl~~~~~-------~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
.--....+. .....++.++.++|+| ||.+++.+..
T Consensus 296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lv~~~~~ 337 (396)
T 2as0_A 296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKD---GGILVTCSCS 337 (396)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEE---EEEEEEEECC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEECC
Confidence 432211111 3456789999999999 8888776644
No 250
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=98.37 E-value=1.4e-07 Score=87.94 Aligned_cols=98 Identities=12% Similarity=0.078 Sum_probs=72.6
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCCC-------CCCccEEEEc
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQS-------IPPADAFFFK 259 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~~-------~p~~D~i~~~ 259 (359)
+..+|||+|||+|.++..+++. ..+++++|++. +++.|+. ..+++++.+|+++. -..||+|++.
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d 286 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 286 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence 5679999999999999999998 56899999954 8877762 23489999998542 1259999984
Q ss_pred chhccCCc-------hHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 260 AIFHAFVD-------EDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 260 ~vl~~~~~-------~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
--....+. .....+++++.++|+| ||.+++....
T Consensus 287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~ 327 (382)
T 1wxx_A 287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKE---GGILATASCS 327 (382)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEE---EEEEEEEECC
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEECC
Confidence 22111111 3446799999999999 8887776643
No 251
>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*
Probab=98.36 E-value=5.3e-06 Score=76.56 Aligned_cols=150 Identities=13% Similarity=0.165 Sum_probs=91.4
Q ss_pred CCeEEEeCCCcchHHHHHHHH-----------------CCCCeEEEeeccc--c----------cccCC----CCCCceE
Q 018205 195 LGSLVDVGGGTGSFARIISEA-----------------FPGIKCTVLDLPH--V----------VPKVP----DTDNLKF 241 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~-----------------~p~~~~~~~D~~~--~----------~~~a~----~~~~v~~ 241 (359)
..+|+|+||++|..+..+... .|.++++.-|+|. . .+..+ ...+-.|
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 689999999999888777665 4678899999972 1 11000 0112233
Q ss_pred ---eeCCCCC-CCC--CccEEEEcchhccCCchH-------------------------H------------HHHHHHHH
Q 018205 242 ---IAGDMFQ-SIP--PADAFFFKAIFHAFVDED-------------------------C------------LKILKRCR 278 (359)
Q Consensus 242 ---~~~d~~~-~~p--~~D~i~~~~vl~~~~~~~-------------------------~------------~~~L~~~~ 278 (359)
+.+.|+. -+| .+|+|+++.+||.+++.. + ..+|+..+
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra 212 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS 212 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455655 456 499999999999875321 1 12377789
Q ss_pred HhcccCCCCcEEEEEeeecCCC--CcchHHHHHHHhhhhhhhh--------hc--CCcccCHHHHHHHHHHcC-CceeEE
Q 018205 279 EAIASRGDRGKVIIIDIVINEK--KEDAQLTEAKLLYDMLMMV--------AV--RGSERTEKEWEKLFLDAG-FSHFKI 345 (359)
Q Consensus 279 ~~L~p~~~gG~lli~~~~~~~~--~~~~~~~~~~~~~~~~~~~--------~~--~g~~~t~~~~~~ll~~aG-f~~~~~ 345 (359)
+.|+| ||++++.-....+. .....-.....+.++.... .. ....++.+|++++++++| |++.++
T Consensus 213 ~eL~p---GG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~l 289 (384)
T 2efj_A 213 EELIS---RGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYL 289 (384)
T ss_dssp HHEEE---EEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEEE
T ss_pred HHhcc---CCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEEE
Confidence 99999 88888777666553 2110000111122211100 01 134579999999999985 777666
Q ss_pred EE
Q 018205 346 TP 347 (359)
Q Consensus 346 ~~ 347 (359)
..
T Consensus 290 e~ 291 (384)
T 2efj_A 290 ET 291 (384)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 252
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=98.35 E-value=7.2e-07 Score=83.26 Aligned_cols=110 Identities=8% Similarity=0.027 Sum_probs=77.2
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCC--------------------------------------CeEEEe
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPG--------------------------------------IKCTVL 224 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~--------------------------------------~~~~~~ 224 (359)
.++.... +.+..+|||.+||+|.+++..+....+ .+++++
T Consensus 192 ~ll~l~~--~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~Gv 269 (393)
T 3k0b_A 192 ALVLLTS--WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGG 269 (393)
T ss_dssp HHHHHSC--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEE
T ss_pred HHHHHhC--CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEE
Confidence 4444445 566789999999999999888875433 569999
Q ss_pred eccc-ccccCCC-------CCCceEeeCCCCC-CCC-CccEEEEcchhcc-CC-chHHHHHHHHHHHhcccCCCCcEEEE
Q 018205 225 DLPH-VVPKVPD-------TDNLKFIAGDMFQ-SIP-PADAFFFKAIFHA-FV-DEDCLKILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 225 D~~~-~~~~a~~-------~~~v~~~~~d~~~-~~p-~~D~i~~~~vl~~-~~-~~~~~~~L~~~~~~L~p~~~gG~lli 292 (359)
|++. +++.|+. .+++++.++|+++ +.+ .||+|+++--... .. .++...+.+.+.+.|++ -+|+.+++
T Consensus 270 Did~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~-~~g~~~~i 348 (393)
T 3k0b_A 270 DIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKR-MPTWSVYV 348 (393)
T ss_dssp ESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHT-CTTCEEEE
T ss_pred ECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhc-CCCCEEEE
Confidence 9954 8887762 3579999999966 233 4999998733211 11 24455677777777765 23788888
Q ss_pred Eee
Q 018205 293 IDI 295 (359)
Q Consensus 293 ~~~ 295 (359)
+..
T Consensus 349 it~ 351 (393)
T 3k0b_A 349 LTS 351 (393)
T ss_dssp EEC
T ss_pred EEC
Confidence 764
No 253
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=98.33 E-value=4.9e-07 Score=88.54 Aligned_cols=127 Identities=17% Similarity=0.165 Sum_probs=84.0
Q ss_pred ChhhhcccCccHHHHHHHHHhhcccchHHHHHhcccc--cCCCCeEEEeCCCcchHHHHHHHHC----CCCeEEEeeccc
Q 018205 155 VFWDYMAKNPDFNSIYNQAMASDSQLANLIVKDCQPI--FQGLGSLVDVGGGTGSFARIISEAF----PGIKCTVLDLPH 228 (359)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~----p~~~~~~~D~~~ 228 (359)
..|+.+++|+-....|.+|+.. ++.+..... ..+...|+|||||+|-++...+++. -+++++++|-+.
T Consensus 322 ~tYevFEkD~vKy~~Ye~AI~~------Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp 395 (637)
T 4gqb_A 322 QTYEVFEKDPIKYSQYQQAIYK------CLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP 395 (637)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH------HHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH
T ss_pred hhhhhhcCChhhHHHHHHHHHH------HHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 3477778888777777776652 333333211 1234679999999998854444332 224789999866
Q ss_pred ccccCCC-------CCCceEeeCCCCC-CCCC-ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEE
Q 018205 229 VVPKVPD-------TDNLKFIAGDMFQ-SIPP-ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKV 290 (359)
Q Consensus 229 ~~~~a~~-------~~~v~~~~~d~~~-~~p~-~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~l 290 (359)
+...+.+ .++|+++.+|+.+ ..|+ +|+|++=.+=...-.+-...+|....+.|+| ||.+
T Consensus 396 ~A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKP---gGim 463 (637)
T 4gqb_A 396 NAVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVSELLGSFADNELSPECLDGAQHFLKD---DGVS 463 (637)
T ss_dssp HHHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEE---EEEE
T ss_pred HHHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEEEEcCcccccccCCHHHHHHHHHhcCC---CcEE
Confidence 5544441 6789999999976 6774 9999974443333334455678888899999 6654
No 254
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=98.32 E-value=5.6e-07 Score=83.96 Aligned_cols=100 Identities=11% Similarity=0.127 Sum_probs=70.9
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----CCCceEeeCCCCCC---CC-CccEEEEcchh
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----TDNLKFIAGDMFQS---IP-PADAFFFKAIF 262 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----~~~v~~~~~d~~~~---~p-~~D~i~~~~vl 262 (359)
.+..+|||+|||+|.++..+++. +.+++++|++. +++.|++ .-..++..+|+++. .+ .||+|++.--.
T Consensus 213 ~~g~~VLDlg~GtG~~sl~~a~~--ga~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~ 290 (393)
T 4dmg_A 213 RPGERVLDVYSYVGGFALRAARK--GAYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPT 290 (393)
T ss_dssp CTTCEEEEESCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCC
T ss_pred cCCCeEEEcccchhHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCc
Confidence 34789999999999999999987 45699999965 8887762 11235678888542 22 39999985322
Q ss_pred ccCCc-------hHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 018205 263 HAFVD-------EDCLKILKRCREAIASRGDRGKVIIIDIVI 297 (359)
Q Consensus 263 ~~~~~-------~~~~~~L~~~~~~L~p~~~gG~lli~~~~~ 297 (359)
..-+. .....+++.+.++|+| ||.+++.+...
T Consensus 291 f~~~~~~~~~~~~~~~~ll~~a~~~Lkp---GG~Lv~~s~s~ 329 (393)
T 4dmg_A 291 LVKRPEELPAMKRHLVDLVREALRLLAE---EGFLWLSSCSY 329 (393)
T ss_dssp CCSSGGGHHHHHHHHHHHHHHHHHTEEE---EEEEEEEECCT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEECCC
Confidence 11111 2335789999999999 88888766544
No 255
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=98.30 E-value=2.1e-06 Score=79.79 Aligned_cols=110 Identities=13% Similarity=0.077 Sum_probs=79.3
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCC--------------------------------------CeEEEe
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPG--------------------------------------IKCTVL 224 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~--------------------------------------~~~~~~ 224 (359)
.++.... +.+...|+|.+||+|.+++..+....+ .+++++
T Consensus 185 all~l~~--~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~Gv 262 (384)
T 3ldg_A 185 AIILLSN--WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGF 262 (384)
T ss_dssp HHHHHTT--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEE
T ss_pred HHHHHhC--CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEE
Confidence 4444444 566789999999999999888865433 569999
Q ss_pred eccc-ccccCCC-------CCCceEeeCCCCC-CCC-CccEEEEcchhc-cC-CchHHHHHHHHHHHhcccCCCCcEEEE
Q 018205 225 DLPH-VVPKVPD-------TDNLKFIAGDMFQ-SIP-PADAFFFKAIFH-AF-VDEDCLKILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 225 D~~~-~~~~a~~-------~~~v~~~~~d~~~-~~p-~~D~i~~~~vl~-~~-~~~~~~~~L~~~~~~L~p~~~gG~lli 292 (359)
|++. +++.|+. .+++++.++|+.+ +.+ .||+|+++--.. .+ ..++...+.+.+.+.|++ -+|+.++|
T Consensus 263 Did~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~-~~g~~~~i 341 (384)
T 3ldg_A 263 DFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAP-LKTWSQFI 341 (384)
T ss_dssp ESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTT-CTTSEEEE
T ss_pred ECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhh-CCCcEEEE
Confidence 9954 8887762 4579999999965 233 499999873322 12 235667788888888875 23788888
Q ss_pred Eee
Q 018205 293 IDI 295 (359)
Q Consensus 293 ~~~ 295 (359)
+..
T Consensus 342 it~ 344 (384)
T 3ldg_A 342 LTN 344 (384)
T ss_dssp EES
T ss_pred EEC
Confidence 764
No 256
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=98.30 E-value=7.1e-07 Score=78.02 Aligned_cols=84 Identities=19% Similarity=0.325 Sum_probs=61.1
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC--CCCceEeeCCCCC-CCCC-c-cE
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD--TDNLKFIAGDMFQ-SIPP-A-DA 255 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~--~~~v~~~~~d~~~-~~p~-~-D~ 255 (359)
..+++.++ ..+..+|||||||+|.++..+++. +..+++++|++. +++.+++ ..+++++.+|+++ +++. + +.
T Consensus 21 ~~iv~~~~--~~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~ 97 (249)
T 3ftd_A 21 KKIAEELN--IEEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCSLGKEL 97 (249)
T ss_dssp HHHHHHTT--CCTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGGSCSSE
T ss_pred HHHHHhcC--CCCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhHccCCc
Confidence 35566665 556789999999999999999987 457899999954 7776654 3578999999965 4443 1 45
Q ss_pred EEEcchhccCCch
Q 018205 256 FFFKAIFHAFVDE 268 (359)
Q Consensus 256 i~~~~vl~~~~~~ 268 (359)
+++.+.-++...+
T Consensus 98 ~vv~NlPy~i~~~ 110 (249)
T 3ftd_A 98 KVVGNLPYNVASL 110 (249)
T ss_dssp EEEEECCTTTHHH
T ss_pred EEEEECchhccHH
Confidence 6666666555443
No 257
>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35
Probab=98.30 E-value=8.3e-06 Score=74.62 Aligned_cols=151 Identities=16% Similarity=0.166 Sum_probs=92.5
Q ss_pred CCCCeEEEeCCCcchHHHHHHHH----------------CCCCeEEEeeccc-ccccC-CC------CCCceE---eeCC
Q 018205 193 QGLGSLVDVGGGTGSFARIISEA----------------FPGIKCTVLDLPH-VVPKV-PD------TDNLKF---IAGD 245 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~----------------~p~~~~~~~D~~~-~~~~a-~~------~~~v~~---~~~d 245 (359)
++..+|+|+||++|..+..+... .|..+++.-|+|. ..... +. ..+-.| +.+.
T Consensus 50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgS 129 (359)
T 1m6e_X 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGS 129 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchh
Confidence 45678999999999654433322 4677899999964 33211 11 012233 4456
Q ss_pred CCC-CCC--CccEEEEcchhccCCc-------------------------------hHHHHHHHHHHHhcccCCCCcEEE
Q 018205 246 MFQ-SIP--PADAFFFKAIFHAFVD-------------------------------EDCLKILKRCREAIASRGDRGKVI 291 (359)
Q Consensus 246 ~~~-~~p--~~D~i~~~~vl~~~~~-------------------------------~~~~~~L~~~~~~L~p~~~gG~ll 291 (359)
|+. -+| .+|+|+++..||.+++ .+...+|+..++.|+| ||+++
T Consensus 130 Fy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~p---GG~mv 206 (359)
T 1m6e_X 130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVP---GGRMV 206 (359)
T ss_dssp SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCT---TCEEE
T ss_pred hhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CceEE
Confidence 665 466 4999999999998753 1234569999999999 89888
Q ss_pred EEeeecCCCCcc-----hHHH-HHHHhhhhhhhh----------hcCCcccCHHHHHHHHHHcCC-ceeEEE
Q 018205 292 IIDIVINEKKED-----AQLT-EAKLLYDMLMMV----------AVRGSERTEKEWEKLFLDAGF-SHFKIT 346 (359)
Q Consensus 292 i~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~----------~~~g~~~t~~~~~~ll~~aGf-~~~~~~ 346 (359)
+.-....+.... ..+. ....+.++.... ......++.+|++++++++|. ++.+..
T Consensus 207 l~~~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~~e 278 (359)
T 1m6e_X 207 LTILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIE 278 (359)
T ss_dssp EEEEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEE
T ss_pred EEEecCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEEEE
Confidence 877766554210 0000 111122221110 012246789999999999965 665543
No 258
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=98.30 E-value=5.1e-07 Score=85.96 Aligned_cols=100 Identities=16% Similarity=0.140 Sum_probs=74.0
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHC-------------CCCeEEEeecc-cccccCCC------C--CCceEeeCCCCCC-
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAF-------------PGIKCTVLDLP-HVVPKVPD------T--DNLKFIAGDMFQS- 249 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~-------------p~~~~~~~D~~-~~~~~a~~------~--~~v~~~~~d~~~~- 249 (359)
....+|+|.|||+|.++..+++.. +..+++|+|+. .+++.|+. . .++.+.++|.+..
T Consensus 170 ~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~ 249 (445)
T 2okc_A 170 QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKE 249 (445)
T ss_dssp CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSC
T ss_pred CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCc
Confidence 446799999999999999888753 35689999994 47776651 1 2688999999763
Q ss_pred C-CCccEEEEcchhccCCch---------------HHHHHHHHHHHhcccCCCCcEEEEEee
Q 018205 250 I-PPADAFFFKAIFHAFVDE---------------DCLKILKRCREAIASRGDRGKVIIIDI 295 (359)
Q Consensus 250 ~-p~~D~i~~~~vl~~~~~~---------------~~~~~L~~~~~~L~p~~~gG~lli~~~ 295 (359)
. ..||+|+++--++..... ....+++++.+.|+| ||++.++.+
T Consensus 250 ~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~---gG~~a~V~p 308 (445)
T 2okc_A 250 PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKT---GGRAAVVLP 308 (445)
T ss_dssp CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred ccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhcc---CCEEEEEEC
Confidence 2 259999997555442211 113689999999999 899888764
No 259
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*
Probab=98.28 E-value=3.7e-06 Score=73.18 Aligned_cols=111 Identities=10% Similarity=0.104 Sum_probs=69.2
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC----CCCceEeeCCCC-CCCC--Cc
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD----TDNLKFIAGDMF-QSIP--PA 253 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~----~~~v~~~~~d~~-~~~p--~~ 253 (359)
..+.++. .+.+..+|||+|||+|.++..++++.+-.+++++|+.. ....... ..++.....++. ..++ .+
T Consensus 64 ~ei~ek~--~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~ 141 (277)
T 3evf_A 64 RWFHERG--YVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVKC 141 (277)
T ss_dssp HHHHHTT--SSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCCC
T ss_pred HHHHHhC--CCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCCc
Confidence 3455553 25677899999999999999988876555677777743 2111111 114444555541 1333 49
Q ss_pred cEEEEcchhc---cCCch-HHHHHHHHHHHhcccCCCC-cEEEEEeeecC
Q 018205 254 DAFFFKAIFH---AFVDE-DCLKILKRCREAIASRGDR-GKVIIIDIVIN 298 (359)
Q Consensus 254 D~i~~~~vl~---~~~~~-~~~~~L~~~~~~L~p~~~g-G~lli~~~~~~ 298 (359)
|+|++....+ ++.|. ....+|+.+.++|+| | |.+++ ....+
T Consensus 142 DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~Lkp---G~G~FV~-KVf~p 187 (277)
T 3evf_A 142 DTLLCDIGESSSSSVTEGERTVRVLDTVEKWLAC---GVDNFCV-KVLAP 187 (277)
T ss_dssp SEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTT---CCSEEEE-EESCT
T ss_pred cEEEecCccCcCchHHHHHHHHHHHHHHHHHhCC---CCCeEEE-EecCC
Confidence 9999977555 11122 223467999999999 8 87776 55543
No 260
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=98.27 E-value=1.4e-06 Score=76.96 Aligned_cols=89 Identities=16% Similarity=0.199 Sum_probs=63.5
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC---CCCceEeeCCCCC-CCC---Cc
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD---TDNLKFIAGDMFQ-SIP---PA 253 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~---~~~v~~~~~d~~~-~~p---~~ 253 (359)
+.+++.+. ..+. +|||||||+|.++..+++.. .+++++|++ .+++.+++ ..+++++.+|+++ +++ .+
T Consensus 37 ~~Iv~~~~--~~~~-~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~~ 111 (271)
T 3fut_A 37 RRIVEAAR--PFTG-PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQG 111 (271)
T ss_dssp HHHHHHHC--CCCS-CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCTT
T ss_pred HHHHHhcC--CCCC-eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccCc
Confidence 35566665 4556 99999999999999999984 689999995 48876652 4689999999965 444 46
Q ss_pred cEEEEcchhccCCchHHHHHHHH
Q 018205 254 DAFFFKAIFHAFVDEDCLKILKR 276 (359)
Q Consensus 254 D~i~~~~vl~~~~~~~~~~~L~~ 276 (359)
|.|+. |.-++.+.+-..++|..
T Consensus 112 ~~iv~-NlPy~iss~il~~ll~~ 133 (271)
T 3fut_A 112 SLLVA-NLPYHIATPLVTRLLKT 133 (271)
T ss_dssp EEEEE-EECSSCCHHHHHHHHHH
T ss_pred cEEEe-cCcccccHHHHHHHhcC
Confidence 66555 45556665544444443
No 261
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=98.25 E-value=2.9e-06 Score=79.98 Aligned_cols=90 Identities=13% Similarity=0.140 Sum_probs=65.2
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCCCCC-CccEEEEcchhcc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQSIP-PADAFFFKAIFHA 264 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~~~p-~~D~i~~~~vl~~ 264 (359)
.+..+|||+|||+|.++..+++. ..+++++|++. +++.|+. .. ++++.+|+.+..+ .||+|++.---..
T Consensus 289 ~~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~~fD~Vv~dPPr~g 365 (425)
T 2jjq_A 289 VEGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVKGFDTVIVDPPRAG 365 (425)
T ss_dssp CCSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCTTCSEEEECCCTTC
T ss_pred CCCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCccCCCEEEEcCCccc
Confidence 45689999999999999999986 56899999954 8887762 23 8999999966444 5999998433211
Q ss_pred CCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 018205 265 FVDEDCLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 265 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
.. ..+++.+. .|+| +|.+++.
T Consensus 366 ~~----~~~~~~l~-~l~p---~givyvs 386 (425)
T 2jjq_A 366 LH----PRLVKRLN-REKP---GVIVYVS 386 (425)
T ss_dssp SC----HHHHHHHH-HHCC---SEEEEEE
T ss_pred hH----HHHHHHHH-hcCC---CcEEEEE
Confidence 11 23555554 4888 6766663
No 262
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=98.23 E-value=8e-06 Score=63.94 Aligned_cols=84 Identities=15% Similarity=0.157 Sum_probs=58.9
Q ss_pred CCCCeEEEeCCCcc-hHHHHHHHHCCCCeEEEeecc-cccccCCCCCCceEeeCCCCCCCC----CccEEEEcchhccCC
Q 018205 193 QGLGSLVDVGGGTG-SFARIISEAFPGIKCTVLDLP-HVVPKVPDTDNLKFIAGDMFQSIP----PADAFFFKAIFHAFV 266 (359)
Q Consensus 193 ~~~~~vlDvG~G~G-~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~v~~~~~d~~~~~p----~~D~i~~~~vl~~~~ 266 (359)
....+|||||||.| ..+..|+++. +..++++|+. ..++ ++..|+|++.. .||+|...+ +
T Consensus 34 ~~~~rVlEVG~G~g~~vA~~La~~~-g~~V~atDInp~Av~---------~v~dDiF~P~~~~Y~~~DLIYsir-----P 98 (153)
T 2k4m_A 34 GPGTRVVEVGAGRFLYVSDYIRKHS-KVDLVLTDIKPSHGG---------IVRDDITSPRMEIYRGAALIYSIR-----P 98 (153)
T ss_dssp CSSSEEEEETCTTCCHHHHHHHHHS-CCEEEEECSSCSSTT---------EECCCSSSCCHHHHTTEEEEEEES-----C
T ss_pred CCCCcEEEEccCCChHHHHHHHHhC-CCeEEEEECCccccc---------eEEccCCCCcccccCCcCEEEEcC-----C
Confidence 34679999999999 5888888743 7889999994 4544 89999988654 699997755 3
Q ss_pred chHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 267 DEDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 267 ~~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
..+....+.++.+.. |.-++|....
T Consensus 99 P~El~~~i~~lA~~v-----~adliI~pL~ 123 (153)
T 2k4m_A 99 PAEIHSSLMRVADAV-----GARLIIKPLT 123 (153)
T ss_dssp CTTTHHHHHHHHHHH-----TCEEEEECBT
T ss_pred CHHHHHHHHHHHHHc-----CCCEEEEcCC
Confidence 344444555555554 3456664433
No 263
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=98.21 E-value=1.3e-06 Score=81.26 Aligned_cols=110 Identities=13% Similarity=0.068 Sum_probs=77.6
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCC--------------------------------------CeEEEe
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPG--------------------------------------IKCTVL 224 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~--------------------------------------~~~~~~ 224 (359)
.++.... +.+..+|||.+||+|.+++.++....+ .+++|+
T Consensus 186 ~ll~~~~--~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~Gv 263 (385)
T 3ldu_A 186 GLIYLTP--WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGY 263 (385)
T ss_dssp HHHHTSC--CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEE
T ss_pred HHHHhhC--CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEE
Confidence 3444444 556789999999999999998776322 579999
Q ss_pred ecc-cccccCCC-------CCCceEeeCCCCCC-CC-CccEEEEcchhcc-CC-chHHHHHHHHHHHhcccCCCCcEEEE
Q 018205 225 DLP-HVVPKVPD-------TDNLKFIAGDMFQS-IP-PADAFFFKAIFHA-FV-DEDCLKILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 225 D~~-~~~~~a~~-------~~~v~~~~~d~~~~-~p-~~D~i~~~~vl~~-~~-~~~~~~~L~~~~~~L~p~~~gG~lli 292 (359)
|++ .+++.|+. .+++++.++|+.+. .+ .||+|+++--... +. .++...+.+++.+.|++ -+|+.+++
T Consensus 264 Did~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~-~~g~~~~i 342 (385)
T 3ldu_A 264 DIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRK-LKNWSYYL 342 (385)
T ss_dssp ESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHT-SBSCEEEE
T ss_pred ECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhh-CCCCEEEE
Confidence 995 48888772 34799999999662 33 4999998644321 22 34556777877777775 22788888
Q ss_pred Eee
Q 018205 293 IDI 295 (359)
Q Consensus 293 ~~~ 295 (359)
+..
T Consensus 343 it~ 345 (385)
T 3ldu_A 343 ITS 345 (385)
T ss_dssp EES
T ss_pred EEC
Confidence 654
No 264
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=98.19 E-value=1.6e-06 Score=86.83 Aligned_cols=97 Identities=15% Similarity=0.170 Sum_probs=71.3
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC--------CCCceEeeCCCCCC---C-CCccEEEEcc
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD--------TDNLKFIAGDMFQS---I-PPADAFFFKA 260 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~--------~~~v~~~~~d~~~~---~-p~~D~i~~~~ 260 (359)
+..+|||+|||+|.++..++... ..+++++|++. +++.|++ .++++++++|+++. . ..||+|++.-
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~g-a~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DP 617 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGG-ARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDP 617 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECC
T ss_pred CCCcEEEeeechhHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECC
Confidence 56899999999999999988853 33699999965 8887762 24799999998652 2 2599999843
Q ss_pred hhc--------cCC-chHHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 261 IFH--------AFV-DEDCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 261 vl~--------~~~-~~~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
-.. .+. ......+++.+.++|+| ||.+++..
T Consensus 618 P~f~~~~~~~~~~~~~~~~~~ll~~a~~~Lkp---gG~L~~s~ 657 (703)
T 3v97_A 618 PTFSNSKRMEDAFDVQRDHLALMKDLKRLLRA---GGTIMFSN 657 (703)
T ss_dssp CSBC-------CCBHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred ccccCCccchhHHHHHHHHHHHHHHHHHhcCC---CcEEEEEE
Confidence 110 111 13456799999999999 77777544
No 265
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=98.18 E-value=1.1e-06 Score=78.88 Aligned_cols=77 Identities=16% Similarity=0.268 Sum_probs=60.9
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----CCCceEeeCCCCC-C--C--
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----TDNLKFIAGDMFQ-S--I-- 250 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----~~~v~~~~~d~~~-~--~-- 250 (359)
+.+++.+. ..+..+|||+|||+|.++..+++++|+.+++++|++. +++.|++ .++++++++|+.+ + .
T Consensus 16 ~e~l~~L~--~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~ 93 (301)
T 1m6y_A 16 REVIEFLK--PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKT 93 (301)
T ss_dssp HHHHHHHC--CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHH
T ss_pred HHHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHh
Confidence 56666665 5567899999999999999999999888999999954 8877652 2689999999843 1 1
Q ss_pred ---CCccEEEEcc
Q 018205 251 ---PPADAFFFKA 260 (359)
Q Consensus 251 ---p~~D~i~~~~ 260 (359)
..||.|++..
T Consensus 94 ~g~~~~D~Vl~D~ 106 (301)
T 1m6y_A 94 LGIEKVDGILMDL 106 (301)
T ss_dssp TTCSCEEEEEEEC
T ss_pred cCCCCCCEEEEcC
Confidence 3599998743
No 266
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=98.18 E-value=2.8e-06 Score=75.38 Aligned_cols=98 Identities=14% Similarity=0.230 Sum_probs=72.9
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCC-----------CCCCceEeeCCCCCCC----CCccEE
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVP-----------DTDNLKFIAGDMFQSI----PPADAF 256 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-----------~~~~v~~~~~d~~~~~----p~~D~i 256 (359)
+.+++||-||+|.|..+..+++..+..+++.+|+ +.+++.++ ..+|++++.+|...-+ ..||+|
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI 161 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence 4678999999999999999998777779999999 55887665 2689999999996632 249999
Q ss_pred EEcchhccCCch---HHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 257 FFKAIFHAFVDE---DCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 257 ~~~~vl~~~~~~---~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
+.-.. ...... -...+++.++++|+| ||.+++..
T Consensus 162 i~D~~-dp~~~~~~L~t~eFy~~~~~~L~p---~Gv~v~q~ 198 (294)
T 3o4f_A 162 ISDCT-DPIGPGESLFTSAFYEGCKRCLNP---GGIFVAQN 198 (294)
T ss_dssp EESCC-CCCCTTCCSSCCHHHHHHHHTEEE---EEEEEEEE
T ss_pred EEeCC-CcCCCchhhcCHHHHHHHHHHhCC---CCEEEEec
Confidence 96422 111100 013589999999999 67666543
No 267
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=98.18 E-value=3.9e-07 Score=80.99 Aligned_cols=65 Identities=17% Similarity=0.317 Sum_probs=51.5
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCC--CeEEEeeccc-ccccCCC--CCCceEeeCCCCC
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPG--IKCTVLDLPH-VVPKVPD--TDNLKFIAGDMFQ 248 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~--~~~~~~D~~~-~~~~a~~--~~~v~~~~~d~~~ 248 (359)
..+++.+. ..+..+|||||||+|.++..|++..+. .+++++|++. +++.+++ ..+++++.+|+++
T Consensus 32 ~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~ 101 (279)
T 3uzu_A 32 DAIVAAIR--PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALT 101 (279)
T ss_dssp HHHHHHHC--CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGG
T ss_pred HHHHHhcC--CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhc
Confidence 34555555 556789999999999999999998543 4599999954 8887764 3689999999965
No 268
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=98.17 E-value=1.1e-06 Score=80.27 Aligned_cols=98 Identities=14% Similarity=0.152 Sum_probs=68.2
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC-----------C---CCceEeeCCCCCC-------C
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD-----------T---DNLKFIAGDMFQS-------I 250 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~-----------~---~~v~~~~~d~~~~-------~ 250 (359)
+.+.+||+||||+|.++..+++..+ .+++++|++ .+++.|++ . ++++++.+|.++. -
T Consensus 187 p~pkrVL~IGgG~G~~arellk~~~-~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~~~ 265 (364)
T 2qfm_A 187 YTGKDVLILGGGDGGILCEIVKLKP-KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEG 265 (364)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTTCC-SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHT
T ss_pred CCCCEEEEEECChhHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhccC
Confidence 4578999999999999999988765 789999995 48876652 1 2799999998652 1
Q ss_pred CCccEEEEcchhccCC-ch---HHHHHHHHH----HHhcccCCCCcEEEEEe
Q 018205 251 PPADAFFFKAIFHAFV-DE---DCLKILKRC----REAIASRGDRGKVIIID 294 (359)
Q Consensus 251 p~~D~i~~~~vl~~~~-~~---~~~~~L~~~----~~~L~p~~~gG~lli~~ 294 (359)
..||+|++--.-..+. .+ -...+++.+ .++|+| ||.+++..
T Consensus 266 ~~fDvII~D~~d~P~~~~p~~L~t~eFy~~~~~~~~~~L~p---gGilv~qs 314 (364)
T 2qfm_A 266 REFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQ---DGKYFTQG 314 (364)
T ss_dssp CCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred CCceEEEECCCCcccCcCchhhhHHHHHHHHHHHHHhhCCC---CcEEEEEc
Confidence 2499999853220110 01 123456666 999999 66666543
No 269
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=98.12 E-value=1.9e-06 Score=75.47 Aligned_cols=63 Identities=19% Similarity=0.337 Sum_probs=51.0
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC----CCCceEeeCCCCC
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD----TDNLKFIAGDMFQ 248 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~----~~~v~~~~~d~~~ 248 (359)
..+++.+. ..+..+|||||||+|.++..++++. .+++++|++. +++.+++ .++++++.+|+++
T Consensus 19 ~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~ 86 (255)
T 3tqs_A 19 QKIVSAIH--PQKTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQ 86 (255)
T ss_dssp HHHHHHHC--CCTTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTT
T ss_pred HHHHHhcC--CCCcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHh
Confidence 35566665 5567899999999999999999874 6899999954 8877652 4789999999976
No 270
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A
Probab=98.08 E-value=1.6e-06 Score=84.99 Aligned_cols=127 Identities=12% Similarity=0.063 Sum_probs=81.5
Q ss_pred ChhhhcccCccHHHHHHHHHhhcccchHHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHC-------------CCCeE
Q 018205 155 VFWDYMAKNPDFNSIYNQAMASDSQLANLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAF-------------PGIKC 221 (359)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-------------p~~~~ 221 (359)
..|+.+.+|+-....|.+|+... +.+.+.. ..+...|+|||||+|-++...+++. ...++
T Consensus 377 ~tYe~fekD~vRy~~Y~~AI~~a------l~d~~~~-~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kV 449 (745)
T 3ua3_A 377 GVYNTFEQDQIKYDVYGEAVVGA------LKDLGAD-GRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKL 449 (745)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH------HHHHHTT-CCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEE
T ss_pred HHHHHHcCChhhHHHHHHHHHHH------HHHhhcc-cCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEE
Confidence 44677777877777777666532 2222210 1235689999999999965332221 23489
Q ss_pred EEeeccc-ccccCC------CCCCceEeeCCCCC-CC------C-CccEEEEcchhccCCchHHHHHHHHHHHhcccCCC
Q 018205 222 TVLDLPH-VVPKVP------DTDNLKFIAGDMFQ-SI------P-PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGD 286 (359)
Q Consensus 222 ~~~D~~~-~~~~a~------~~~~v~~~~~d~~~-~~------p-~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~ 286 (359)
+++|-+. .+...+ -.++|+++.+|+.+ .. | .+|+|++=..=.....+-...+|..+.+.|+|
T Consensus 450 yAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp--- 526 (745)
T 3ua3_A 450 YIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKP--- 526 (745)
T ss_dssp EEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCT---
T ss_pred EEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCC---
Confidence 9999854 332211 15789999999966 44 4 59999986654333344456688888899999
Q ss_pred CcEEE
Q 018205 287 RGKVI 291 (359)
Q Consensus 287 gG~ll 291 (359)
||.++
T Consensus 527 ~Gi~i 531 (745)
T 3ua3_A 527 TTISI 531 (745)
T ss_dssp TCEEE
T ss_pred CcEEE
Confidence 66543
No 271
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}
Probab=98.07 E-value=8.1e-06 Score=71.18 Aligned_cols=109 Identities=17% Similarity=0.177 Sum_probs=69.6
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC----CCCceEee-C-CCCC-CCCCc
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD----TDNLKFIA-G-DMFQ-SIPPA 253 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~----~~~v~~~~-~-d~~~-~~p~~ 253 (359)
..+.+++. +.+..+|||+|||.|.++..+++..+-.+++++|+.. +...+.. ..++.... . |+.. ....+
T Consensus 80 ~ei~eK~~--Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~ 157 (282)
T 3gcz_A 80 RWMEERGY--VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFNMEVIPG 157 (282)
T ss_dssp HHHHHTTS--CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGGSCCCCC
T ss_pred HHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchhhcCCCCc
Confidence 56666664 6677899999999999999988877666788999843 3222221 12333222 2 4322 11249
Q ss_pred cEEEEcchhccCCc----h-HHHHHHHHHHHhcccCCCC--cEEEEEeeec
Q 018205 254 DAFFFKAIFHAFVD----E-DCLKILKRCREAIASRGDR--GKVIIIDIVI 297 (359)
Q Consensus 254 D~i~~~~vl~~~~~----~-~~~~~L~~~~~~L~p~~~g--G~lli~~~~~ 297 (359)
|+|+|-...+ -.. + ....+|+-+.++|+| | |.+++ ....
T Consensus 158 DvVLSDmApn-sG~~~~D~~rs~~LL~~A~~~Lk~---g~~G~Fv~-KvF~ 203 (282)
T 3gcz_A 158 DTLLCDIGES-SPSIAVEEQRTLRVLNCAKQWLQE---GNYTEFCI-KVLC 203 (282)
T ss_dssp SEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHHH---HCCCEEEE-EESC
T ss_pred CEEEecCccC-CCChHHHHHHHHHHHHHHHHHcCC---CCCCcEEE-EEec
Confidence 9999976665 322 1 223468888999999 6 76665 4443
No 272
>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A
Probab=97.99 E-value=4.4e-05 Score=69.46 Aligned_cols=142 Identities=11% Similarity=0.118 Sum_probs=102.4
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCC----C-----------------------CCCceEeeCCC
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVP----D-----------------------TDNLKFIAGDM 246 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~----~-----------------------~~~v~~~~~d~ 246 (359)
+...||.+|||.......+...++++.++-+|.|++++.-+ + .++..++..|+
T Consensus 97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~DL 176 (334)
T 1rjd_A 97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDL 176 (334)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCT
T ss_pred CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecCC
Confidence 46899999999999999999888888999999988664321 0 36899999999
Q ss_pred CCC---------C--C-CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhh
Q 018205 247 FQS---------I--P-PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYD 314 (359)
Q Consensus 247 ~~~---------~--p-~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~ 314 (359)
.+. . + ...++++-.+|++++.++..++|+.+.+.+ | +|.+++.|...+....+. +... ....
T Consensus 177 ~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~---~~~~v~~e~i~~~~~~~~-fg~~-m~~~ 250 (334)
T 1rjd_A 177 NDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-S---HGLWISYDPIGGSQPNDR-FGAI-MQSN 250 (334)
T ss_dssp TCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-S---SEEEEEEEECCCCSTTCC-HHHH-HHHH
T ss_pred CCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-C---CcEEEEEeccCCCCCcch-HHHH-HHHH
Confidence 651 1 1 256888899999999999999999999988 4 688888998876332221 2211 1111
Q ss_pred hhh-h-h--hcCCcccCHHHHHHHHHHcCCc
Q 018205 315 MLM-M-V--AVRGSERTEKEWEKLFLDAGFS 341 (359)
Q Consensus 315 ~~~-~-~--~~~g~~~t~~~~~~ll~~aGf~ 341 (359)
+.. . . .......+.++..+.|.++||.
T Consensus 251 l~~~rg~~l~~~~~y~s~~~~~~rl~~~Gf~ 281 (334)
T 1rjd_A 251 LKESRNLEMPTLMTYNSKEKYASRWSAAPNV 281 (334)
T ss_dssp HHHHHCCCCTTTTTTCSHHHHHGGGTTSSEE
T ss_pred hhcccCCcccccccCCCHHHHHHHHHHCCCC
Confidence 111 0 0 1112346889999999999997
No 273
>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}
Probab=97.98 E-value=5.7e-06 Score=72.48 Aligned_cols=128 Identities=16% Similarity=0.200 Sum_probs=80.0
Q ss_pred CCCeEEEeCCCcchHHHHHHHH-------CCC-----CeEEEeec-c---cccc-----------cCC------------
Q 018205 194 GLGSLVDVGGGTGSFARIISEA-------FPG-----IKCTVLDL-P---HVVP-----------KVP------------ 234 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~-------~p~-----~~~~~~D~-~---~~~~-----------~a~------------ 234 (359)
+..+|||||+|+|..+..+++. .|+ ++++++|. | +.+. .|+
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 4579999999999988776654 674 58999997 4 1111 111
Q ss_pred --------CCCCceEeeCCCCC---CCC-----CccEEEEcchhccCCchH--HHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 235 --------DTDNLKFIAGDMFQ---SIP-----PADAFFFKAIFHAFVDED--CLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 235 --------~~~~v~~~~~d~~~---~~p-----~~D~i~~~~vl~~~~~~~--~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
...+++++.+|+.+ ..+ .||+|++-- +..-..++ ...+|+.+.++|+| ||.++...
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~-fsp~~~p~lw~~~~l~~l~~~L~p---GG~l~tys-- 213 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDG-FAPAKNPDMWTQNLFNAMARLARP---GGTLATFT-- 213 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECS-SCTTTCGGGCCHHHHHHHHHHEEE---EEEEEESC--
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECC-CCcccChhhcCHHHHHHHHHHcCC---CcEEEEEe--
Confidence 12457788999743 222 499999842 21111112 24599999999999 77766411
Q ss_pred cCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCceeEEEEeCCceeEEEE
Q 018205 297 INEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPVYGIKSLIEV 357 (359)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~~~~~~~~~~vi~~ 357 (359)
. ...+++.|.++||.+.++.-.+....++.+
T Consensus 214 --a----------------------------a~~vrr~L~~aGF~v~~~~g~~~kr~m~~a 244 (257)
T 2qy6_A 214 --S----------------------------AGFVRRGLQEAGFTMQKRKGFGRKREMLCG 244 (257)
T ss_dssp --C----------------------------BHHHHHHHHHHTEEEEEECCSTTCCCEEEE
T ss_pred --C----------------------------CHHHHHHHHHCCCEEEeCCCCCCCCceEEE
Confidence 0 013567788899997766555444444443
No 274
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=97.98 E-value=5e-06 Score=73.00 Aligned_cols=71 Identities=11% Similarity=0.284 Sum_probs=53.3
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-c-------cccccCCC-------CCCceEeeCCCCCC---C---
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-P-------HVVPKVPD-------TDNLKFIAGDMFQS---I--- 250 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~-------~~~~~a~~-------~~~v~~~~~d~~~~---~--- 250 (359)
..+..+|||+|||+|..+..+++. +.+++++|+ + .+++.|+. .++++++.+|+.+. +
T Consensus 81 ~~~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~ 158 (258)
T 2r6z_A 81 HTAHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKT 158 (258)
T ss_dssp GGGCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHH
T ss_pred cCCcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhcc
Confidence 345679999999999999999986 578999999 5 55555542 25699999998542 2
Q ss_pred -CCccEEEEcchhcc
Q 018205 251 -PPADAFFFKAIFHA 264 (359)
Q Consensus 251 -p~~D~i~~~~vl~~ 264 (359)
..||+|++.-.+++
T Consensus 159 ~~~fD~V~~dP~~~~ 173 (258)
T 2r6z_A 159 QGKPDIVYLDPMYPE 173 (258)
T ss_dssp HCCCSEEEECCCC--
T ss_pred CCCccEEEECCCCCC
Confidence 35999999655543
No 275
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=97.98 E-value=3.6e-06 Score=73.60 Aligned_cols=83 Identities=14% Similarity=0.150 Sum_probs=56.0
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC----CCCceEeeCCCCC-CCCC---
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD----TDNLKFIAGDMFQ-SIPP--- 252 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~----~~~v~~~~~d~~~-~~p~--- 252 (359)
..+++.+. ..+..+|||||||+|.++. +. +.+..+++++|++ .+++.+++ .++++++.+|+.+ +++.
T Consensus 11 ~~iv~~~~--~~~~~~VLEIG~G~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~~~ 86 (252)
T 1qyr_A 11 DSIVSAIN--PQKGQAMVEIGPGLAALTE-PV-GERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAE 86 (252)
T ss_dssp HHHHHHHC--CCTTCCEEEECCTTTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHHH
T ss_pred HHHHHhcC--CCCcCEEEEECCCCcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHHhhc
Confidence 35555555 5567899999999999999 64 4443349999995 48876653 2479999999965 3332
Q ss_pred ---ccEEEEcchhccCCch
Q 018205 253 ---ADAFFFKAIFHAFVDE 268 (359)
Q Consensus 253 ---~D~i~~~~vl~~~~~~ 268 (359)
.+.++.++.-++.+.+
T Consensus 87 ~~~~~~~vvsNlPY~i~~~ 105 (252)
T 1qyr_A 87 KMGQPLRVFGNLPYNISTP 105 (252)
T ss_dssp HHTSCEEEEEECCTTTHHH
T ss_pred ccCCceEEEECCCCCccHH
Confidence 2345555555555443
No 276
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Probab=97.96 E-value=4.4e-05 Score=69.57 Aligned_cols=69 Identities=14% Similarity=0.172 Sum_probs=56.7
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCCCCCceEeeCCCCCCCC---CccEEEEcchh
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPDTDNLKFIAGDMFQSIP---PADAFFFKAIF 262 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~p---~~D~i~~~~vl 262 (359)
+.++.++||+||++|.++..++++ +.+|+++|+..+-......++|+++.+|.+...| .+|+|+|-.+.
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~ 280 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVE 280 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCSS
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcChhhccCCCeEEEeCccccccCCCCCcCEEEEcCCC
Confidence 467899999999999999999988 6799999986655544567899999999977333 49999997665
No 277
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=97.92 E-value=3.5e-06 Score=78.13 Aligned_cols=88 Identities=13% Similarity=0.216 Sum_probs=63.3
Q ss_pred CCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCCC---C--------------
Q 018205 195 LGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQS---I-------------- 250 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~~---~-------------- 250 (359)
..+|||+|||+|.++..+++. ..+++++|++. +++.|+. .++++++.+|..+. .
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~--~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~ 291 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARN--FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDL 291 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGG--SSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCG
T ss_pred CCEEEEccCCCCHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhcccccccccccc
Confidence 478999999999999999875 45899999954 8877762 35799999998431 1
Q ss_pred --CCccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 018205 251 --PPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDI 295 (359)
Q Consensus 251 --p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~ 295 (359)
..||+|++.- |.. .+..++.+.|++ +|++++++.
T Consensus 292 ~~~~fD~Vv~dP-----Pr~---g~~~~~~~~l~~---~g~ivyvsc 327 (369)
T 3bt7_A 292 KSYQCETIFVDP-----PRS---GLDSETEKMVQA---YPRILYISC 327 (369)
T ss_dssp GGCCEEEEEECC-----CTT---CCCHHHHHHHTT---SSEEEEEES
T ss_pred ccCCCCEEEECc-----Ccc---ccHHHHHHHHhC---CCEEEEEEC
Confidence 1589998632 111 234556666777 788888764
No 278
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=97.87 E-value=2e-05 Score=79.01 Aligned_cols=109 Identities=13% Similarity=0.105 Sum_probs=74.0
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHC------------------------------------------CCCe
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAF------------------------------------------PGIK 220 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~------------------------------------------p~~~ 220 (359)
.++.... +.+..+|||.+||+|.+++..+... +..+
T Consensus 181 ~ll~~~~--~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~ 258 (703)
T 3v97_A 181 AIVMRSG--WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSH 258 (703)
T ss_dssp HHHHHTT--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHhhC--CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCcc
Confidence 4444444 4567899999999999998887642 2358
Q ss_pred EEEeecc-cccccCCC-------CCCceEeeCCCCCC-CC----CccEEEEcchhc-cC-CchHHHHHHHHHHHhcc---
Q 018205 221 CTVLDLP-HVVPKVPD-------TDNLKFIAGDMFQS-IP----PADAFFFKAIFH-AF-VDEDCLKILKRCREAIA--- 282 (359)
Q Consensus 221 ~~~~D~~-~~~~~a~~-------~~~v~~~~~d~~~~-~p----~~D~i~~~~vl~-~~-~~~~~~~~L~~~~~~L~--- 282 (359)
++|+|++ .+++.|+. .+.+++.++|+.+. .| .+|+|+++=-.. .+ .+++...+.+.+.+.|+
T Consensus 259 i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~ 338 (703)
T 3v97_A 259 FYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQF 338 (703)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHC
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhC
Confidence 9999994 58887762 34689999999652 22 589999872221 12 23445556665555554
Q ss_pred cCCCCcEEEEEeee
Q 018205 283 SRGDRGKVIIIDIV 296 (359)
Q Consensus 283 p~~~gG~lli~~~~ 296 (359)
| ||.++|+...
T Consensus 339 ~---g~~~~ilt~~ 349 (703)
T 3v97_A 339 G---GWNLSLFSAS 349 (703)
T ss_dssp T---TCEEEEEESC
T ss_pred C---CCeEEEEeCC
Confidence 6 8999988653
No 279
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=97.73 E-value=1.4e-05 Score=74.02 Aligned_cols=92 Identities=11% Similarity=0.051 Sum_probs=67.9
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC----C-----------------CCceEeeCCCCCC--
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD----T-----------------DNLKFIAGDMFQS-- 249 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~----~-----------------~~v~~~~~d~~~~-- 249 (359)
+..+|||+|||+|..+..++++.+..+++++|++ ..++.+++ . .+++++.+|..+.
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 3689999999999999999999888899999994 46665541 1 2388999998431
Q ss_pred -CC-CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 250 -IP-PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 250 -~p-~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
.+ .||+|++.- . ... ..+++.+.+.|++ ||.+++..
T Consensus 127 ~~~~~fD~I~lDP-~---~~~--~~~l~~a~~~lk~---gG~l~vt~ 164 (378)
T 2dul_A 127 ERHRYFHFIDLDP-F---GSP--MEFLDTALRSAKR---RGILGVTA 164 (378)
T ss_dssp HSTTCEEEEEECC-S---SCC--HHHHHHHHHHEEE---EEEEEEEE
T ss_pred hccCCCCEEEeCC-C---CCH--HHHHHHHHHhcCC---CCEEEEEe
Confidence 22 499999532 1 111 3589999999999 78666543
No 280
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Probab=97.72 E-value=0.00016 Score=63.50 Aligned_cols=105 Identities=14% Similarity=0.157 Sum_probs=66.5
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC----CCCc-eEeeC-CCCCCCC-Cc
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD----TDNL-KFIAG-DMFQSIP-PA 253 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~----~~~v-~~~~~-d~~~~~p-~~ 253 (359)
..+.++ . .+.+..+|||+||++|.++..++++.+-.+++++|+.. +...... ..++ .+..+ |++.-.+ .+
T Consensus 71 ~ei~ek-~-l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~~~ 148 (300)
T 3eld_A 71 RWLHER-G-YLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTEPS 148 (300)
T ss_dssp HHHHHH-T-SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCCCC
T ss_pred HHHHHh-C-CCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCceeeecCCCCc
Confidence 445555 3 46678899999999999999999876555788999843 2221110 1122 33322 4433122 49
Q ss_pred cEEEEcchhccCCch-----HHHHHHHHHHHhcccCCCC-cEEEE
Q 018205 254 DAFFFKAIFHAFVDE-----DCLKILKRCREAIASRGDR-GKVII 292 (359)
Q Consensus 254 D~i~~~~vl~~~~~~-----~~~~~L~~~~~~L~p~~~g-G~lli 292 (359)
|+|++...-+ -... ....+|+-+.++|+| | |.+++
T Consensus 149 DlVlsD~APn-sG~~~~D~~rs~~LL~~A~~~Lkp---G~G~FV~ 189 (300)
T 3eld_A 149 DTLLCDIGES-SSNPLVERDRTMKVLENFERWKHV---NTENFCV 189 (300)
T ss_dssp SEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCT---TCCEEEE
T ss_pred CEEeecCcCC-CCCHHHHHHHHHHHHHHHHHHhcC---CCCcEEE
Confidence 9999965544 3221 123568888999999 7 77666
No 281
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=97.70 E-value=5e-05 Score=73.78 Aligned_cols=100 Identities=16% Similarity=0.135 Sum_probs=71.0
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCC------------------CCeEEEeecc-cccccCC------CCC-----CceEe
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFP------------------GIKCTVLDLP-HVVPKVP------DTD-----NLKFI 242 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p------------------~~~~~~~D~~-~~~~~a~------~~~-----~v~~~ 242 (359)
....+|+|.+||+|.++..+++... ..+++|+|+. .+++.|+ ... ++.+.
T Consensus 168 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~ 247 (541)
T 2ar0_A 168 QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIR 247 (541)
T ss_dssp CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEE
T ss_pred CCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeE
Confidence 4467999999999999988876531 2479999994 4776665 122 27899
Q ss_pred eCCCCCC----CCCccEEEEcchhccCCc------------hHHHHHHHHHHHhcccCCCCcEEEEEee
Q 018205 243 AGDMFQS----IPPADAFFFKAIFHAFVD------------EDCLKILKRCREAIASRGDRGKVIIIDI 295 (359)
Q Consensus 243 ~~d~~~~----~p~~D~i~~~~vl~~~~~------------~~~~~~L~~~~~~L~p~~~gG~lli~~~ 295 (359)
++|.+.. ...||+|+++--+..... .....+++++.+.|+| ||++.++-+
T Consensus 248 ~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~---gGr~a~V~p 313 (541)
T 2ar0_A 248 LGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHP---GGRAAVVVP 313 (541)
T ss_dssp ESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred eCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCC---CCEEEEEec
Confidence 9998762 235999998643332211 1123699999999999 899888754
No 282
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=97.69 E-value=8.3e-05 Score=66.91 Aligned_cols=67 Identities=9% Similarity=0.076 Sum_probs=52.1
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeeccc-ccccCCC------CCCceEeeCCCCCC---C---CCccEEE
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQS---I---PPADAFF 257 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~~---~---p~~D~i~ 257 (359)
..+..+|||+|||+|..+..+++.. +..+++++|++. +++.+++ ..+++++.+|+.+. . ..||.|+
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl 179 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 179 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEE
Confidence 4567899999999999999999875 457999999954 7766552 35799999998541 1 2489999
Q ss_pred E
Q 018205 258 F 258 (359)
Q Consensus 258 ~ 258 (359)
+
T Consensus 180 ~ 180 (309)
T 2b9e_A 180 L 180 (309)
T ss_dssp E
T ss_pred E
Confidence 6
No 283
>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*
Probab=97.65 E-value=0.00017 Score=64.88 Aligned_cols=143 Identities=13% Similarity=0.064 Sum_probs=93.4
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCC---------CCCCceEeeCCCCCCC------CCc-----
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVP---------DTDNLKFIAGDMFQSI------PPA----- 253 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~---------~~~~v~~~~~d~~~~~------p~~----- 253 (359)
+...||++|||-=.....+.. .++++++-+|.|.+++..+ ...+..++..|+.+.+ .++
T Consensus 102 g~~QvV~LGaGlDTra~Rl~~-~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~~P 180 (310)
T 2uyo_A 102 GIRQFVILASGLDSRAYRLDW-PTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSAR 180 (310)
T ss_dssp TCCEEEEETCTTCCHHHHSCC-CTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSC
T ss_pred CCCeEEEeCCCCCchhhhccC-CCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCCCC
Confidence 456899999998887666542 2257899999988766433 2567899999996521 123
Q ss_pred cEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhh-h-hhhhh-----h-cCCcc
Q 018205 254 DAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLY-D-MLMMV-----A-VRGSE 325 (359)
Q Consensus 254 D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~-~-~~~~~-----~-~~g~~ 325 (359)
=++++-.+++++++++...+++.+.+.+.| |..++++....+.... ......+. . +.-.. . .....
T Consensus 181 t~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~----gs~l~~d~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~l~~~~~ 254 (310)
T 2uyo_A 181 TAWLAEGLLMYLPATAQDGLFTEIGGLSAV----GSRIAVETSPLHGDEW--REQMQLRFRRVSDALGFEQAVDVQELIY 254 (310)
T ss_dssp EEEEECSCGGGSCHHHHHHHHHHHHHTCCT----TCEEEEECCCTTCSHH--HHHHHHHHHHHHC-----------CCTT
T ss_pred EEEEEechHhhCCHHHHHHHHHHHHHhCCC----CeEEEEEecCCCCcch--hHHHHHHHHHHHHHcCCcCCCCcccccc
Confidence 367888999999999999999999999888 5566667665543111 00011111 1 10000 0 11122
Q ss_pred -cC-HHHHHHHHHHcCCcee
Q 018205 326 -RT-EKEWEKLFLDAGFSHF 343 (359)
Q Consensus 326 -~t-~~~~~~ll~~aGf~~~ 343 (359)
.+ .++..++|.+.||+.+
T Consensus 255 ~~~~~~~~~~~f~~~G~~~~ 274 (310)
T 2uyo_A 255 HDENRAVVADWLNRHGWRAT 274 (310)
T ss_dssp CCTTCCCHHHHHTTTTEEEE
T ss_pred CCCChHHHHHHHHHCcCccc
Confidence 25 7899999999999987
No 284
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=97.65 E-value=1.3e-05 Score=74.40 Aligned_cols=92 Identities=9% Similarity=0.014 Sum_probs=68.1
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCC-CeEEEeecc-cccccCCC-------CCC-ceEeeCCCCC----CCC-CccEEEE
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPG-IKCTVLDLP-HVVPKVPD-------TDN-LKFIAGDMFQ----SIP-PADAFFF 258 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~~-~~~~~a~~-------~~~-v~~~~~d~~~----~~p-~~D~i~~ 258 (359)
+..+|||++||+|.++..++.+.++ .+++++|++ ..++.+++ .++ ++++.+|.++ ..+ .||+|++
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l 131 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL 131 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence 4679999999999999999998665 589999994 47766652 234 8999999843 223 4999998
Q ss_pred cchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 259 KAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 259 ~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
.- +... ..+++.+.+.|++ ||.|++..
T Consensus 132 DP----~g~~--~~~l~~a~~~Lk~---gGll~~t~ 158 (392)
T 3axs_A 132 DP----FGTP--VPFIESVALSMKR---GGILSLTA 158 (392)
T ss_dssp CC----SSCC--HHHHHHHHHHEEE---EEEEEEEE
T ss_pred CC----CcCH--HHHHHHHHHHhCC---CCEEEEEe
Confidence 54 1111 3489999999999 77555544
No 285
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=97.55 E-value=2.7e-05 Score=68.14 Aligned_cols=94 Identities=17% Similarity=0.304 Sum_probs=60.9
Q ss_pred HHHHhcccccCCC--CeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-c-------cccCC----C----CCCceEeeC
Q 018205 183 LIVKDCQPIFQGL--GSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-V-------VPKVP----D----TDNLKFIAG 244 (359)
Q Consensus 183 ~~~~~~~~~~~~~--~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~-------~~~a~----~----~~~v~~~~~ 244 (359)
.+.+.+. ..+. .+|||+|||+|..+..++.+ +.+++++|++. + ++.++ . ..+++++++
T Consensus 77 ~l~~al~--l~~g~~~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~ 152 (258)
T 2oyr_A 77 AVAKAVG--IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA 152 (258)
T ss_dssp HHHHHTT--CBTTBCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEES
T ss_pred HHHHHhc--ccCCCCCEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEEC
Confidence 4455554 4445 89999999999999999998 56899999954 3 22221 1 157899999
Q ss_pred CCCC---CCC-CccEEEEcchhccCCchHHHHHHHHHHHhccc
Q 018205 245 DMFQ---SIP-PADAFFFKAIFHAFVDEDCLKILKRCREAIAS 283 (359)
Q Consensus 245 d~~~---~~p-~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p 283 (359)
|..+ ..+ .||+|++.-.++.- ... ..+++..+.|++
T Consensus 153 D~~~~L~~~~~~fDvV~lDP~y~~~-~~s--aavkk~~~~lr~ 192 (258)
T 2oyr_A 153 SSLTALTDITPRPQVVYLDPMFPHK-QKS--ALVKKEMRVFQS 192 (258)
T ss_dssp CHHHHSTTCSSCCSEEEECCCCCCC-CC-------HHHHHHHH
T ss_pred CHHHHHHhCcccCCEEEEcCCCCCc-ccc--hHHHHHHHHHHH
Confidence 9843 233 49999997766542 221 344445555544
No 286
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=97.55 E-value=0.0006 Score=58.52 Aligned_cols=104 Identities=17% Similarity=0.195 Sum_probs=62.6
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCC----CeEEEeecccccccCCCCCCc---eEeeC-CCCCCCC-C
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPG----IKCTVLDLPHVVPKVPDTDNL---KFIAG-DMFQSIP-P 252 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~----~~~~~~D~~~~~~~a~~~~~v---~~~~~-d~~~~~p-~ 252 (359)
..+.+++ .+.+..+|||+||+.|.++...+++.+- -.++++|+ +.........++ .+..+ |+++..+ .
T Consensus 63 ~EIdeK~--likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~~~P~~~~~~Gv~~i~~~~G~Df~~~~~~~ 139 (269)
T 2px2_A 63 RWLVERR--FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-HEEPMLMQSYGWNIVTMKSGVDVFYKPSEI 139 (269)
T ss_dssp HHHHHTT--SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-SCCCCCCCSTTGGGEEEECSCCGGGSCCCC
T ss_pred HHHHHcC--CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-ccCCCcccCCCceEEEeeccCCccCCCCCC
Confidence 4566664 4788899999999999999998885211 12344443 111111111455 44447 9976333 5
Q ss_pred ccEEEEcchhccCCchH-----HHHHHHHHHHhcccCCCCc-EEEE
Q 018205 253 ADAFFFKAIFHAFVDED-----CLKILKRCREAIASRGDRG-KVII 292 (359)
Q Consensus 253 ~D~i~~~~vl~~~~~~~-----~~~~L~~~~~~L~p~~~gG-~lli 292 (359)
+|+|+|-..= .-+... ....|.-+.++|+| || .+++
T Consensus 140 ~DvVLSDMAP-nSG~~~vD~~Rs~~aL~~A~~~Lk~---gG~~Fvv 181 (269)
T 2px2_A 140 SDTLLCDIGE-SSPSAEIEEQRTLRILEMVSDWLSR---GPKEFCI 181 (269)
T ss_dssp CSEEEECCCC-CCSCHHHHHHHHHHHHHHHHHHHTT---CCSEEEE
T ss_pred CCEEEeCCCC-CCCccHHHHHHHHHHHHHHHHHhhc---CCcEEEE
Confidence 9999975433 222111 12357777799999 77 5655
No 287
>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*
Probab=97.48 E-value=0.0025 Score=57.71 Aligned_cols=146 Identities=12% Similarity=0.231 Sum_probs=101.8
Q ss_pred CCCeEEEeCCCcchHHHHHHHH-CCCCeEEEeeccccccc-CC----------------------------CCCCceEee
Q 018205 194 GLGSLVDVGGGTGSFARIISEA-FPGIKCTVLDLPHVVPK-VP----------------------------DTDNLKFIA 243 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~~~~~~~-a~----------------------------~~~~v~~~~ 243 (359)
+...||-+|||.=.....+... .++++++=+|.|++++. .+ ..++..++.
T Consensus 90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v~ 169 (334)
T 3iei_A 90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIG 169 (334)
T ss_dssp TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEECHHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEEE
T ss_pred CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCcHHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEEc
Confidence 4679999999999988888765 35788999999886542 00 146889999
Q ss_pred CCCCC--CC---------C-C-ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHH
Q 018205 244 GDMFQ--SI---------P-P-ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAK 310 (359)
Q Consensus 244 ~d~~~--~~---------p-~-~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~ 310 (359)
.|+.+ .. . . .=++++=.++.+++.++..++|+.+.+..++ |.+++.|...++.. +...
T Consensus 170 ~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f~~----~~~i~yE~i~p~d~----fg~~- 240 (334)
T 3iei_A 170 ADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFER----AMFINYEQVNMGDR----FGQI- 240 (334)
T ss_dssp CCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSS----EEEEEEEECCTTSH----HHHH-
T ss_pred cccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhCCC----ceEEEEeccCCCCH----HHHH-
Confidence 99865 11 1 1 3377788899999999999999999998865 88888898865421 2111
Q ss_pred Hhhhhhhhhh-cCC--cccCHHHHHHHHHHcCCceeEEEEe
Q 018205 311 LLYDMLMMVA-VRG--SERTEKEWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 311 ~~~~~~~~~~-~~g--~~~t~~~~~~ll~~aGf~~~~~~~~ 348 (359)
+...+..... ..+ ...+.++..+.|.++||+.+++..+
T Consensus 241 M~~~l~~~g~pl~sl~~y~t~~~~~~r~~~~Gw~~~~~~d~ 281 (334)
T 3iei_A 241 MIENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDM 281 (334)
T ss_dssp HHHHHHTTTCCCTTGGGGGCHHHHHHHHHTTTCSEEEEEEH
T ss_pred HHHHHHHhCCCCcccccCCCHHHHHHHHHHcCCCcceeecH
Confidence 1111111000 011 2357889999999999998877665
No 288
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Probab=97.48 E-value=0.00027 Score=70.55 Aligned_cols=101 Identities=10% Similarity=0.084 Sum_probs=68.4
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCC---CCeEEEeecc-cccccC--C----------CCCCceEeeCCCCCC----CCC
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFP---GIKCTVLDLP-HVVPKV--P----------DTDNLKFIAGDMFQS----IPP 252 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p---~~~~~~~D~~-~~~~~a--~----------~~~~v~~~~~d~~~~----~p~ 252 (359)
.+..+|+|.|||+|.++..+++..+ ..+++|+|+. .+++.| + ......+...|++.. ...
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~k 399 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFAN 399 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTT
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCC
Confidence 4568999999999999999998875 3579999994 466655 1 112235566666542 235
Q ss_pred ccEEEEcchhcc-CC-ch-------------------------HHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 253 ADAFFFKAIFHA-FV-DE-------------------------DCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 253 ~D~i~~~~vl~~-~~-~~-------------------------~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
||+|+++==+-. .. +. -...+++++.+.|+| ||++.++-+.
T Consensus 400 FDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKp---GGrLAfIlP~ 467 (878)
T 3s1s_A 400 VSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQD---GTVISAIMPK 467 (878)
T ss_dssp EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCT---TCEEEEEEET
T ss_pred CCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCC---CcEEEEEECh
Confidence 999998532211 11 10 123478899999999 8998886643
No 289
>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*
Probab=97.42 E-value=0.0011 Score=56.13 Aligned_cols=110 Identities=13% Similarity=0.122 Sum_probs=71.9
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccccccc------CCCCCCceEeeC-CCCCCC-CCc
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPK------VPDTDNLKFIAG-DMFQSI-PPA 253 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~------a~~~~~v~~~~~-d~~~~~-p~~ 253 (359)
..+.+++. +.+..+|||+||++|.++...+....-.+|+++|+-.+-.. .-..+.|+|..+ |++.-. -.+
T Consensus 68 ~ei~ek~~--l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~~~~ 145 (267)
T 3p8z_A 68 QWFVERNM--VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPPEKC 145 (267)
T ss_dssp HHHHHTTS--SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCCCCC
T ss_pred HHHHHhcC--CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecCCccc
Confidence 45666664 66778999999999999998888775558999999332111 113578999999 974422 239
Q ss_pred cEEEEcchhccCCchH--H---HHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 018205 254 DAFFFKAIFHAFVDED--C---LKILKRCREAIASRGDRGKVIIIDIVINE 299 (359)
Q Consensus 254 D~i~~~~vl~~~~~~~--~---~~~L~~~~~~L~p~~~gG~lli~~~~~~~ 299 (359)
|+|+|--.= --+.+. . .++|.-+.++|++ |.++| ...-+.
T Consensus 146 DtllcDIge-Ss~~~~vE~~RtlrvLela~~wL~~----~~fc~-KVl~py 190 (267)
T 3p8z_A 146 DTLLCDIGE-SSPSPTVEESRTIRVLKMVEPWLKN----NQFCI-KVLNPY 190 (267)
T ss_dssp SEEEECCCC-CCSCHHHHHHHHHHHHHHHGGGCSS----CEEEE-EESCCC
T ss_pred cEEEEecCC-CCCChhhhhhHHHHHHHHHHHhccc----CCEEE-EEccCC
Confidence 999985433 222222 1 2366666788887 55655 434333
No 290
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=97.40 E-value=4.3e-05 Score=71.14 Aligned_cols=65 Identities=12% Similarity=0.186 Sum_probs=51.7
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC----C----CCceEeeCCCCCCC-----CCccEEEE
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD----T----DNLKFIAGDMFQSI-----PPADAFFF 258 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~----~----~~v~~~~~d~~~~~-----p~~D~i~~ 258 (359)
....+|||+|||+|..+..+++. +.+++++|++. +++.|+. . ++++++++|+.+.. ..||+|++
T Consensus 92 ~~g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~l 169 (410)
T 3ll7_A 92 REGTKVVDLTGGLGIDFIALMSK--ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYV 169 (410)
T ss_dssp CTTCEEEESSCSSSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEE
T ss_pred CCCCEEEEeCCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEE
Confidence 34689999999999999999887 56899999954 8877652 1 47999999996531 25999998
Q ss_pred c
Q 018205 259 K 259 (359)
Q Consensus 259 ~ 259 (359)
.
T Consensus 170 D 170 (410)
T 3ll7_A 170 D 170 (410)
T ss_dssp C
T ss_pred C
Confidence 4
No 291
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=97.39 E-value=0.00031 Score=68.01 Aligned_cols=98 Identities=14% Similarity=0.100 Sum_probs=70.5
Q ss_pred CCCeEEEeCCCcchHHHHHHHHC---CCCeEEEeecc-cccccCCC--------CCCceEeeCCCCCC-CC-----CccE
Q 018205 194 GLGSLVDVGGGTGSFARIISEAF---PGIKCTVLDLP-HVVPKVPD--------TDNLKFIAGDMFQS-IP-----PADA 255 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~---p~~~~~~~D~~-~~~~~a~~--------~~~v~~~~~d~~~~-~p-----~~D~ 255 (359)
...+|+|.+||+|.++..+++.. +..+++|+|+. .+...|+. .+++.+..+|.+.. .| .||+
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~ 300 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDG 300 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSE
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccE
Confidence 46799999999999999988875 35789999994 47666651 24678999998753 22 4999
Q ss_pred EEEcchh-ccC---------------------CchHHHHHHHHHHHhcc-cCCCCcEEEEEee
Q 018205 256 FFFKAIF-HAF---------------------VDEDCLKILKRCREAIA-SRGDRGKVIIIDI 295 (359)
Q Consensus 256 i~~~~vl-~~~---------------------~~~~~~~~L~~~~~~L~-p~~~gG~lli~~~ 295 (359)
|+++=-+ ..| .+.+ ..+++++.+.|+ | ||++.++-+
T Consensus 301 IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~-~~Fl~~~l~~Lk~~---gGr~a~VlP 359 (542)
T 3lkd_A 301 VLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKAD-FAFLLHGYYHLKQD---NGVMAIVLP 359 (542)
T ss_dssp EEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCH-HHHHHHHHHTBCTT---TCEEEEEEE
T ss_pred EEecCCcCCccccchhhhhhhhhhhhhhcCCCchhh-HHHHHHHHHHhCCC---ceeEEEEec
Confidence 9976111 011 0111 248999999999 8 899887653
No 292
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}
Probab=97.36 E-value=0.0012 Score=57.81 Aligned_cols=110 Identities=11% Similarity=0.199 Sum_probs=71.0
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccc-ccc---CC--CCCCceEeeC-CCCC-CCCCc
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHV-VPK---VP--DTDNLKFIAG-DMFQ-SIPPA 253 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~-~~~---a~--~~~~v~~~~~-d~~~-~~p~~ 253 (359)
..+.+++. +.+..+|||+||++|.++..++....-.+|+++|+-.. -+. .+ ..+-|.+..+ |++. +...+
T Consensus 84 ~ei~~~~~--l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~~~~ 161 (321)
T 3lkz_A 84 RWLVERRF--LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPSECC 161 (321)
T ss_dssp HHHHHTTS--CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCCCCC
T ss_pred HHHHHhcC--CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCCCCC
Confidence 45556654 56677999999999999998887765457999999322 110 11 1244788888 8744 22349
Q ss_pred cEEEEcchhccCCchHH-----HHHHHHHHHhcccCCCC-cEEEEEeeecC
Q 018205 254 DAFFFKAIFHAFVDEDC-----LKILKRCREAIASRGDR-GKVIIIDIVIN 298 (359)
Q Consensus 254 D~i~~~~vl~~~~~~~~-----~~~L~~~~~~L~p~~~g-G~lli~~~~~~ 298 (359)
|+|+|--. .--+.+.+ .++|.-+.++|++ + |.++| ...-+
T Consensus 162 D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~---~~~~f~~-KVl~p 207 (321)
T 3lkz_A 162 DTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHR---GPREFCV-KVLCP 207 (321)
T ss_dssp SEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTT---CCCEEEE-EESCT
T ss_pred CEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhcc---CCCcEEE-EEcCC
Confidence 99998555 44443322 3467777899988 5 66655 44433
No 293
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*
Probab=97.34 E-value=0.00013 Score=82.63 Aligned_cols=142 Identities=13% Similarity=0.118 Sum_probs=67.2
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCC-----CeEEEeeccc-ccccCCCC---CCceEeeCCCCCC---CC-CccEEEEcc
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPG-----IKCTVLDLPH-VVPKVPDT---DNLKFIAGDMFQS---IP-PADAFFFKA 260 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~-----~~~~~~D~~~-~~~~a~~~---~~v~~~~~d~~~~---~p-~~D~i~~~~ 260 (359)
+..+||+||+|+|..+..+.+.... .+++..|++. ..+.|++. -.++....|..++ .+ .||+|++++
T Consensus 1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~~ 1319 (2512)
T 2vz8_A 1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCNC 1319 (2512)
T ss_dssp SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEEC
T ss_pred CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEcc
Confidence 3579999999999887776665432 3689999965 77777642 1122222233222 12 499999999
Q ss_pred hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCC
Q 018205 261 IFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGF 340 (359)
Q Consensus 261 vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf 340 (359)
+||.-++. ...|++++++|+| ||.+++.+...... +......+... ...++...+.++|.++|.++||
T Consensus 1320 vl~~t~~~--~~~l~~~~~lL~p---~G~l~~~e~~~~~~-----~g~~~~~~~~~--~r~~~~~~~~~~w~~~l~~~gf 1387 (2512)
T 2vz8_A 1320 ALATLGDP--AVAVGNMAATLKE---GGFLLLHTLLAGHP-----LGEMVGFLTSP--EQGGRHLLSQDQWESLFAGASL 1387 (2512)
T ss_dssp C-------------------------CCEEEEEEC---------------------------------CTTTTSSTTTTE
T ss_pred cccccccH--HHHHHHHHHhcCC---CcEEEEEecccccc-----ccccccccccc--cccCCcccCHHHHHHHHHhCCC
Confidence 99866443 5689999999999 99998877543110 00000000000 0011234577899999999999
Q ss_pred ceeEEEE
Q 018205 341 SHFKITP 347 (359)
Q Consensus 341 ~~~~~~~ 347 (359)
+.+....
T Consensus 1388 ~~~~~~~ 1394 (2512)
T 2vz8_A 1388 HLVALKR 1394 (2512)
T ss_dssp EEEEEEE
T ss_pred ceeeecc
Confidence 9876643
No 294
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=97.28 E-value=0.00021 Score=62.57 Aligned_cols=73 Identities=22% Similarity=0.252 Sum_probs=57.3
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCCC--CCCceEeeCCCCC--C------C
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVPD--TDNLKFIAGDMFQ--S------I 250 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~v~~~~~d~~~--~------~ 250 (359)
+.+++.+. ..+...+||.+||.|.++..++++ +.+++++|. +.+++.|++ .+|++++.+|+.+ . .
T Consensus 12 ~e~le~L~--~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~l~~~L~~~g~ 87 (285)
T 1wg8_A 12 QEALDLLA--VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGV 87 (285)
T ss_dssp HHHHHHHT--CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTC
T ss_pred HHHHHhhC--CCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHhhccCCEEEEECCcchHHHHHHHcCC
Confidence 67778776 566789999999999999999998 679999999 447655432 2689999999943 1 1
Q ss_pred CCccEEEE
Q 018205 251 PPADAFFF 258 (359)
Q Consensus 251 p~~D~i~~ 258 (359)
..+|.|++
T Consensus 88 ~~vDgIL~ 95 (285)
T 1wg8_A 88 ERVDGILA 95 (285)
T ss_dssp SCEEEEEE
T ss_pred CCcCEEEe
Confidence 34888885
No 295
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=97.27 E-value=0.00012 Score=67.05 Aligned_cols=96 Identities=16% Similarity=0.122 Sum_probs=67.7
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCCC--------------CCCceEeeCCCCCC-------CC
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVPD--------------TDNLKFIAGDMFQS-------IP 251 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------------~~~v~~~~~d~~~~-------~p 251 (359)
++++||-||+|.|..+..+++. |..+++.+|+ +.+++.+++ .+|++++.+|..+. ..
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh-~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~ 283 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKL-KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR 283 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTT-CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred CCCeEEEECCCcHHHHHHHHhc-CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence 4689999999999999999875 5579999999 558776541 35789999998531 12
Q ss_pred CccEEEEcchhccC-Cc-------hHHHHHHHHHHHhcccCCCCcEEEEE
Q 018205 252 PADAFFFKAIFHAF-VD-------EDCLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 252 ~~D~i~~~~vl~~~-~~-------~~~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
.||+|+.--.-... ++ .-...+++.++++|+| ||.++..
T Consensus 284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p---~GVlv~Q 330 (381)
T 3c6k_A 284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQ---DGKYFTQ 330 (381)
T ss_dssp CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEE---EEEEEEE
T ss_pred ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCC---CCEEEEe
Confidence 59999974221110 11 1124688999999999 6765543
No 296
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=97.19 E-value=0.00015 Score=49.24 Aligned_cols=55 Identities=20% Similarity=0.324 Sum_probs=44.9
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecc
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALT 102 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t 102 (359)
+..|++.|.+.+.++|..|||+.+|+ +...+.+.++.|...|++.... .+.|+++
T Consensus 12 ~~~IL~~L~~~~~~~s~~eLA~~lgl---sr~tv~~~l~~L~~~G~I~~~~--------~G~y~lg 66 (67)
T 2heo_A 12 EQKILQVLSDDGGPVAIFQLVKKCQV---PKKTLNQVLYRLKKEDRVSSPS--------PKYWSIG 66 (67)
T ss_dssp HHHHHHHHHHHCSCEEHHHHHHHHCS---CHHHHHHHHHHHHHTTSEEEEE--------TTEEEEC
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEecCC--------CceEeeC
Confidence 44577777653368999999999999 6899999999999999998754 5778764
No 297
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=97.11 E-value=0.00026 Score=68.71 Aligned_cols=97 Identities=16% Similarity=0.133 Sum_probs=66.3
Q ss_pred CCeEEEeCCCcchHHHHHHHHCC---------------CCeEEEeecc-cccccCCC-------CCCceEeeCCCCCC--
Q 018205 195 LGSLVDVGGGTGSFARIISEAFP---------------GIKCTVLDLP-HVVPKVPD-------TDNLKFIAGDMFQS-- 249 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~p---------------~~~~~~~D~~-~~~~~a~~-------~~~v~~~~~d~~~~-- 249 (359)
..+|+|.+||+|.++..+++..+ ..+++|+|+. .+++.|+. ..++.+.++|.+..
T Consensus 245 ~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~ 324 (544)
T 3khk_A 245 KGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQ 324 (544)
T ss_dssp SEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCS
T ss_pred CCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCcc
Confidence 34999999999999888765432 4689999994 47766651 23455588998652
Q ss_pred CC--CccEEEEcchhc--cCCch-------------------------HHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 250 IP--PADAFFFKAIFH--AFVDE-------------------------DCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 250 ~p--~~D~i~~~~vl~--~~~~~-------------------------~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
.+ .||+|+++=-+. .|..+ ....+++++.+.|+| ||++.++-
T Consensus 325 ~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~---gGr~aiVl 395 (544)
T 3khk_A 325 HPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAP---TGSMALLL 395 (544)
T ss_dssp CTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred cccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhcc---CceEEEEe
Confidence 22 499999852222 12110 112589999999999 89988865
No 298
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=97.00 E-value=0.0019 Score=54.04 Aligned_cols=90 Identities=12% Similarity=0.169 Sum_probs=59.9
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCC-------C--CCCceEeeCCCCCC-------------
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVP-------D--TDNLKFIAGDMFQS------------- 249 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~-------~--~~~v~~~~~d~~~~------------- 249 (359)
.+..+|||+||| .-+..+++ .++.+++.+|.. +..+.|+ - .++|+++.+|..+.
T Consensus 29 ~~a~~VLEiGtG--ySTl~lA~-~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~ 105 (202)
T 3cvo_A 29 EEAEVILEYGSG--GSTVVAAE-LPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWR 105 (202)
T ss_dssp HHCSEEEEESCS--HHHHHHHT-STTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGG
T ss_pred hCCCEEEEECch--HHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhh
Confidence 457899999985 45555555 457899999984 4555554 1 46899999995321
Q ss_pred -----------C---CCccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 250 -----------I---PPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 250 -----------~---p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
. ..||+|++-.-. ....+..+.+.|+| || ++++|.+
T Consensus 106 ~l~~~~~~i~~~~~~~~fDlIfIDg~k-------~~~~~~~~l~~l~~---GG-~Iv~DNv 155 (202)
T 3cvo_A 106 SYPDYPLAVWRTEGFRHPDVVLVDGRF-------RVGCALATAFSITR---PV-TLLFDDY 155 (202)
T ss_dssp GTTHHHHGGGGCTTCCCCSEEEECSSS-------HHHHHHHHHHHCSS---CE-EEEETTG
T ss_pred hHHHHhhhhhccccCCCCCEEEEeCCC-------chhHHHHHHHhcCC---Ce-EEEEeCC
Confidence 1 249999985421 12456667789999 55 5566654
No 299
>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}
Probab=96.99 E-value=0.0016 Score=57.50 Aligned_cols=96 Identities=17% Similarity=0.208 Sum_probs=66.1
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHC-----CCCeEEEeeccc-cc--------------------------ccCC------
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAF-----PGIKCTVLDLPH-VV--------------------------PKVP------ 234 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~-----p~~~~~~~D~~~-~~--------------------------~~a~------ 234 (359)
..+.+|||+|+..|..+..++... ++.+++++|.-+ +- +.++
T Consensus 105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~ 184 (282)
T 2wk1_A 105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY 184 (282)
T ss_dssp TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence 346899999999999888887654 478899999622 11 1111
Q ss_pred -C-CCCceEeeCCCCCC---CC--CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 235 -D-TDNLKFIAGDMFQS---IP--PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 235 -~-~~~v~~~~~d~~~~---~p--~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
- .++|+++.||+.+. .+ .+|+|++-.-.+ +.....|..+...|+| |.++++|..
T Consensus 185 gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~y----~~~~~~Le~~~p~L~p----GGiIv~DD~ 245 (282)
T 2wk1_A 185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDLY----ESTWDTLTNLYPKVSV----GGYVIVDDY 245 (282)
T ss_dssp TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCSH----HHHHHHHHHHGGGEEE----EEEEEESSC
T ss_pred CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCcc----ccHHHHHHHHHhhcCC----CEEEEEcCC
Confidence 0 37899999999542 32 388888754221 2345689999999999 456666644
No 300
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=96.89 E-value=0.00064 Score=49.67 Aligned_cols=62 Identities=13% Similarity=0.157 Sum_probs=51.2
Q ss_pred HHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccccc
Q 018205 30 TSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSK 106 (359)
Q Consensus 30 ~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~ 106 (359)
.++..-.++.|+..| . ++.|+.|||+.+|+ +...+.+.|+.|...|++.... +.|++++.++
T Consensus 26 ~~l~~~~r~~Il~~L-~--~~~~~~eLa~~l~i---s~~tv~~~L~~L~~~Glv~~~~---------g~y~l~~~g~ 87 (96)
T 1y0u_A 26 YAVTNPVRRKILRML-D--KGRSEEEIMQTLSL---SKKQLDYHLKVLEAGFCIERVG---------ERWVVTDAGK 87 (96)
T ss_dssp HHHSCHHHHHHHHHH-H--TTCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET---------TEEEECTTTC
T ss_pred HHhCCHHHHHHHHHH-c--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEC---------CEEEECCCch
Confidence 344455667788888 6 78999999999999 6899999999999999999873 5888887654
No 301
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=96.86 E-value=0.00037 Score=52.32 Aligned_cols=63 Identities=16% Similarity=0.246 Sum_probs=52.2
Q ss_pred hcCcchhcccCCCCCCHHHHHHhc--CCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccccccccC
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSAL--EINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFLKD 111 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~--~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~~l~~~ 111 (359)
+..|+..|.+. +++|+.+||+.+ |+ ....+++.|+.|...|+|+..+ .+.|++|+.+..+...
T Consensus 15 d~~IL~~L~~~-g~~s~~eLA~~l~~gi---S~~aVs~rL~~Le~~GLV~~~~--------rg~Y~LT~~G~~~l~~ 79 (111)
T 3b73_A 15 DDRILEIIHEE-GNGSPKELEDRDEIRI---SKSSVSRRLKKLADHDLLQPLA--------NGVYVITEEGEAYLNG 79 (111)
T ss_dssp HHHHHHHHHHH-SCBCHHHHHTSTTCCS---CHHHHHHHHHHHHHTTSEEECS--------TTCEEECHHHHHHHTT
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHhcCC---CHHHHHHHHHHHHHCCCEEecC--------CceEEECchHHHHHHH
Confidence 45567777653 699999999999 99 6799999999999999999874 5689999988755544
No 302
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=96.65 E-value=0.0016 Score=48.02 Aligned_cols=51 Identities=18% Similarity=0.227 Sum_probs=41.4
Q ss_pred HHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 32 LKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 32 l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
|..-.++.|+..|.+ ++.|+.|||+.+|+ .+..+.+.|+.|...|++....
T Consensus 20 l~~~~r~~Il~~L~~--~~~~~~ela~~l~i---s~~tvs~~L~~L~~~Glv~~~~ 70 (102)
T 3pqk_A 20 LSHPVRLMLVCTLVE--GEFSVGELEQQIGI---GQPTLSQQLGVLRESGIVETRR 70 (102)
T ss_dssp HCSHHHHHHHHHHHT--CCBCHHHHHHHHTC---CTTHHHHHHHHHHHTTSEEEEC
T ss_pred cCCHHHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEE
Confidence 333445556666655 68999999999999 6789999999999999998765
No 303
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=96.64 E-value=0.00085 Score=59.24 Aligned_cols=57 Identities=12% Similarity=0.262 Sum_probs=46.9
Q ss_pred cCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccc
Q 018205 38 LDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTS 105 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~ 105 (359)
+.|++.|...++++|+.|||+++|+ +...+.|+|+.|+..|++.++. +++|++++..
T Consensus 33 l~IL~~l~~~~~~ltl~eia~~lgl---~ksTv~RlL~tL~~~G~v~~~~--------~~~Y~LG~~~ 89 (275)
T 3mq0_A 33 VRILDLVAGSPRDLTAAELTRFLDL---PKSSAHGLLAVMTELDLLARSA--------DGTLRIGPHS 89 (275)
T ss_dssp HHHHHHHHHCSSCEEHHHHHHHHTC---C--CHHHHHHHHHHTTSEEECT--------TSEEEECTHH
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEECC--------CCcEEehHHH
Confidence 4577777765468999999999999 6899999999999999999885 5789998754
No 304
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=96.58 E-value=0.0012 Score=48.40 Aligned_cols=53 Identities=17% Similarity=0.342 Sum_probs=45.0
Q ss_pred HHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 30 TSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 30 ~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
.+|..-.++.|+..|.+ ++.|+.|||+.+|+ ++..+.+.|+.|...|++....
T Consensus 18 ~~l~~~~r~~Il~~L~~--~~~~~~ela~~l~i---s~~tvs~~L~~L~~~Glv~~~~ 70 (98)
T 3jth_A 18 KAMANERRLQILCMLHN--QELSVGELCAKLQL---SQSALSQHLAWLRRDGLVTTRK 70 (98)
T ss_dssp HHHCSHHHHHHHHHTTT--SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHcCCHHHHHHHHHHhc--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEE
Confidence 34445566778888876 79999999999999 6899999999999999998775
No 305
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=96.50 E-value=0.0014 Score=45.78 Aligned_cols=60 Identities=8% Similarity=0.076 Sum_probs=47.1
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcc-cHHHHHHHHHccCceeeecccccccCccceEecccccc
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKAD-GLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSK 106 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~-~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~ 106 (359)
+-.|++.|... +|.|+.+||+.+|+ ... .+++.|..|+..|+++..+.+ .-.|.+|+.++
T Consensus 13 ~~~IL~~Lk~~-g~~ta~eiA~~Lgi---t~~~aVr~hL~~Le~eGlV~~~~~g------RP~w~LT~~g~ 73 (79)
T 1xmk_A 13 KEKICDYLFNV-SDSSALNLAKNIGL---TKARDINAVLIDMERQGDVYRQGTT------PPIWHLTDKKR 73 (79)
T ss_dssp HHHHHHHHHHT-CCEEHHHHHHHHCG---GGHHHHHHHHHHHHHTTSEEEECSS------SCEEEECHHHH
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHcCC---CcHHHHHHHHHHHHHCCCEEecCCC------CCCeEeCHhHH
Confidence 44556667664 79999999999999 456 899999999999999866422 23788887665
No 306
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=96.35 E-value=0.0018 Score=49.60 Aligned_cols=55 Identities=9% Similarity=0.131 Sum_probs=45.4
Q ss_pred HHHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 29 STSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 29 ~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
+.+|..-.++.|+..|... ++.|+.|||+.+|+ ++..+.+.|+.|...|++....
T Consensus 36 ~~al~~~~rl~IL~~L~~~-~~~s~~eLa~~l~i---s~stvs~~L~~L~~~Glv~~~~ 90 (122)
T 1u2w_A 36 LKAIADENRAKITYALCQD-EELCVCDIANILGV---TIANASHHLRTLYKQGVVNFRK 90 (122)
T ss_dssp HHHHHSHHHHHHHHHHHHS-SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEC-
T ss_pred HHHhCCHHHHHHHHHHHHC-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEE
Confidence 4455555677888888742 79999999999999 6899999999999999998764
No 307
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=96.32 E-value=0.0015 Score=49.68 Aligned_cols=53 Identities=15% Similarity=0.332 Sum_probs=44.9
Q ss_pred HHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 30 TSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 30 ~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
.+|..-.++.|+..|.+ ++.++.|||+.+|+ ++..+.+.|+.|...|++....
T Consensus 13 ~al~~~~R~~Il~~L~~--~~~~~~eLa~~l~i---s~~tvs~hL~~L~~~GlV~~~~ 65 (118)
T 3f6o_A 13 QALADPTRRAVLGRLSR--GPATVSELAKPFDM---ALPSFMKHIHFLEDSGWIRTHK 65 (118)
T ss_dssp HHHTSHHHHHHHHHHHT--CCEEHHHHHTTCCS---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHhCCHHHHHHHHHHHh--CCCCHHHHHHHhCc---CHHHHHHHHHHHHHCCCeEEEe
Confidence 44555567777777775 79999999999999 6899999999999999998765
No 308
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=96.31 E-value=0.0014 Score=57.38 Aligned_cols=58 Identities=19% Similarity=0.281 Sum_probs=48.4
Q ss_pred cCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccc
Q 018205 38 LDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTS 105 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~ 105 (359)
+.|++.|...++++|+.|||+++|+ ++..+.|+|+.|+..|++++... .++|++++..
T Consensus 9 l~IL~~l~~~~~~lsl~eia~~lgl---~ksT~~RlL~tL~~~G~v~~~~~-------~~~Y~lG~~~ 66 (260)
T 3r4k_A 9 LTLLTYFNHGRLEIGLSDLTRLSGM---NKATVYRLMSELQEAGFVEQVEG-------ARSYRLGPQV 66 (260)
T ss_dssp HHHHTTCBTTBSEEEHHHHHHHHCS---CHHHHHHHHHHHHHTTSEEECSS-------SSEEEECTTH
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEcCC-------CCcEEcCHHH
Confidence 3467777654468999999999999 78999999999999999998752 3799998754
No 309
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=96.30 E-value=0.0017 Score=48.82 Aligned_cols=47 Identities=13% Similarity=0.233 Sum_probs=39.8
Q ss_pred HhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 36 VELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
.++.|+..|.. ++.|+.|||+.+|+ +...+.+.|+.|...|++....
T Consensus 22 ~r~~IL~~L~~--~~~~~~ela~~l~i---s~~tv~~~l~~L~~~gli~~~~ 68 (114)
T 2oqg_A 22 TRWEILTELGR--ADQSASSLATRLPV---SRQAIAKHLNALQACGLVESVK 68 (114)
T ss_dssp HHHHHHHHHHH--SCBCHHHHHHHSSS---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHc--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeeEEe
Confidence 44556666744 68999999999999 6899999999999999998764
No 310
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=96.28 E-value=0.0017 Score=48.27 Aligned_cols=49 Identities=10% Similarity=0.175 Sum_probs=40.8
Q ss_pred HHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 34 CAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 34 ~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
.-.++.|+..|.. ++.|+.|||+.+|+ ++..+.+.|+.|...|++....
T Consensus 25 ~~~r~~IL~~L~~--~~~~~~ela~~l~i---s~stvs~~L~~L~~~Glv~~~~ 73 (106)
T 1r1u_A 25 DYNRIRIMELLSV--SEASVGHISHQLNL---SQSNVSHQLKLLKSVHLVKAKR 73 (106)
T ss_dssp SHHHHHHHHHHHH--CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEE
Confidence 3345556666665 68999999999999 6899999999999999998765
No 311
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=96.24 E-value=0.0011 Score=49.63 Aligned_cols=46 Identities=11% Similarity=0.179 Sum_probs=38.7
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
++.|+..|.+ ++.|+.|||+.+|+ ++..+.+.|+.|...|++....
T Consensus 27 r~~IL~~L~~--~~~s~~eLa~~lgi---s~stvs~~L~~L~~~GlV~~~~ 72 (108)
T 2kko_A 27 RLQILDLLAQ--GERAVEAIATATGM---NLTTASANLQALKSGGLVEARR 72 (108)
T ss_dssp THHHHHHHTT--CCEEHHHHHHHHTC---CHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHc--CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEE
Confidence 3445556654 68999999999999 6899999999999999998764
No 312
>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}
Probab=96.20 E-value=0.022 Score=49.80 Aligned_cols=92 Identities=12% Similarity=0.084 Sum_probs=61.2
Q ss_pred cCCCCeEEEeCC------CcchHHHHHHHHCCC-CeEEEeecccccccCCCCCCceEeeCCCCCC--CCCccEEEEcchh
Q 018205 192 FQGLGSLVDVGG------GTGSFARIISEAFPG-IKCTVLDLPHVVPKVPDTDNLKFIAGDMFQS--IPPADAFFFKAIF 262 (359)
Q Consensus 192 ~~~~~~vlDvG~------G~G~~~~~l~~~~p~-~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~--~p~~D~i~~~~vl 262 (359)
.+.+.+|||+|+ ..|.+ .+.+..|. ..++.+|+.++...+. .++++|+.+. ...||+|++-..=
T Consensus 107 vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~sda~-----~~IqGD~~~~~~~~k~DLVISDMAP 179 (344)
T 3r24_A 107 VPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVSDAD-----STLIGDCATVHTANKWDLIISDMYD 179 (344)
T ss_dssp CCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBCSSS-----EEEESCGGGEEESSCEEEEEECCCC
T ss_pred ecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccccCCC-----eEEEccccccccCCCCCEEEecCCC
Confidence 467899999996 66773 44455775 6999999977554332 5589997442 2349999964221
Q ss_pred -------ccC--CchHHHHHHHHHHHhcccCCCCcEEEEE
Q 018205 263 -------HAF--VDEDCLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 263 -------~~~--~~~~~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
..- ...-+..++.=+.+.|+| ||.+++=
T Consensus 180 NtTG~~D~d~~Rs~~L~ElALdfA~~~Lkp---GGsFvVK 216 (344)
T 3r24_A 180 PRTKHVTKENDSKEGFFTYLCGFIKQKLAL---GGSIAVK 216 (344)
T ss_dssp TTSCSSCSCCCCCCTHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred CcCCccccchhHHHHHHHHHHHHHHHhCcC---CCEEEEE
Confidence 100 112356678888999999 7877773
No 313
>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*
Probab=96.18 E-value=0.017 Score=51.30 Aligned_cols=127 Identities=21% Similarity=0.320 Sum_probs=72.9
Q ss_pred CCCeEEEeCCCcchHHHH----HHHHCCCCe--EEEeecccccccCC--------------------CCCCc--eEeeCC
Q 018205 194 GLGSLVDVGGGTGSFARI----ISEAFPGIK--CTVLDLPHVVPKVP--------------------DTDNL--KFIAGD 245 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~----l~~~~p~~~--~~~~D~~~~~~~a~--------------------~~~~v--~~~~~d 245 (359)
+.-+|+|+|=|+|..... +.+..|+.+ ++.+|-. .++... ...++ ++..+|
T Consensus 96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~-pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GD 174 (308)
T 3vyw_A 96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKE-LLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGD 174 (308)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESS-CCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESC
T ss_pred CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHH-HHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEech
Confidence 346899999999974432 334567765 4555531 111110 02333 566777
Q ss_pred CCC---CCC--CccEEEEcchhccCCchH--HHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhh
Q 018205 246 MFQ---SIP--PADAFFFKAIFHAFVDED--CLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMM 318 (359)
Q Consensus 246 ~~~---~~p--~~D~i~~~~vl~~~~~~~--~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (359)
+.+ .++ .+|++++-. |-.-.+++ ...++++++++++| ||.+.-..
T Consensus 175 a~~~l~~l~~~~~Da~flDg-FsP~kNPeLWs~e~f~~l~~~~~p---gg~laTYt------------------------ 226 (308)
T 3vyw_A 175 ARKRIKEVENFKADAVFHDA-FSPYKNPELWTLDFLSLIKERIDE---KGYWVSYS------------------------ 226 (308)
T ss_dssp HHHHGGGCCSCCEEEEEECC-SCTTTSGGGGSHHHHHHHHTTEEE---EEEEEESC------------------------
T ss_pred HHHHHhhhcccceeEEEeCC-CCcccCcccCCHHHHHHHHHHhCC---CcEEEEEe------------------------
Confidence 743 233 389888643 21111121 13599999999999 66554311
Q ss_pred hhcCCcccCHHHHHHHHHHcCCceeEEEEeCCceeEEEE
Q 018205 319 VAVRGSERTEKEWEKLFLDAGFSHFKITPVYGIKSLIEV 357 (359)
Q Consensus 319 ~~~~g~~~t~~~~~~ll~~aGf~~~~~~~~~~~~~vi~~ 357 (359)
+...+++-|.++||.+.++.-.++-.-+..+
T Consensus 227 --------aag~VRR~L~~aGF~V~k~~G~g~KReml~A 257 (308)
T 3vyw_A 227 --------SSLSVRKSLLTLGFKVGSSREIGRKRKGTVA 257 (308)
T ss_dssp --------CCHHHHHHHHHTTCEEEEEECC---CEEEEE
T ss_pred --------CcHHHHHHHHHCCCEEEecCCCCCCCceeEE
Confidence 1234678899999998888776665555544
No 314
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=96.17 E-value=0.0019 Score=49.07 Aligned_cols=52 Identities=13% Similarity=0.080 Sum_probs=42.7
Q ss_pred HHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 31 SLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 31 ~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
+|..-.++.|+..|.. ++.++.|||+.+|+ ++..+.+.|+.|...|++....
T Consensus 17 aL~~~~r~~IL~~L~~--~~~~~~eLa~~lgi---s~stvs~~L~~L~~~GlV~~~~ 68 (118)
T 2jsc_A 17 ALADPTRCRILVALLD--GVCYPGQLAAHLGL---TRSNVSNHLSCLRGCGLVVATY 68 (118)
T ss_dssp HHSSHHHHHHHHHHHT--TCCSTTTHHHHHSS---CHHHHHHHHHHHTTTTSEEEEE
T ss_pred HhCCHHHHHHHHHHHc--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCceEEEE
Confidence 3444455667777765 68999999999999 6899999999999999998764
No 315
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}
Probab=96.11 E-value=0.0067 Score=54.40 Aligned_cols=64 Identities=19% Similarity=0.276 Sum_probs=53.4
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeec-ccccccCC--CCCCceEeeCCCC
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDL-PHVVPKVP--DTDNLKFIAGDMF 247 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~--~~~~v~~~~~d~~ 247 (359)
+.+++.+. ..+...+||..||.|..+..++++. |+.+++++|. +.+++.|+ ..+|++++.+++.
T Consensus 47 ~Evl~~L~--i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~ 114 (347)
T 3tka_A 47 DEAVNGLN--IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFS 114 (347)
T ss_dssp HHHHHHTC--CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTTCCCTTEEEEESCGG
T ss_pred HHHHHhhC--CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhhcCCcEEEEeCCHH
Confidence 78888887 6677899999999999999999985 7889999999 45777654 2478899999883
No 316
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=96.10 E-value=0.0027 Score=54.85 Aligned_cols=58 Identities=9% Similarity=0.150 Sum_probs=47.2
Q ss_pred CcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccccc
Q 018205 39 DIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSK 106 (359)
Q Consensus 39 glf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~ 106 (359)
.|++.|...++++|+.|||+.+|+ ++..+.|+|+.|+..|++++... +++|++++...
T Consensus 10 ~iL~~l~~~~~~~s~~ela~~~gl---~~stv~r~l~~L~~~G~v~~~~~-------~~~Y~lg~~~~ 67 (241)
T 2xrn_A 10 SIMRALGSHPHGLSLAAIAQLVGL---PRSTVQRIINALEEEFLVEALGP-------AGGFRLGPALG 67 (241)
T ss_dssp HHHHHHHTCTTCEEHHHHHHHTTS---CHHHHHHHHHHHHTTTSEEECGG-------GCEEEECSHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeCC-------CCeEEECHHHH
Confidence 456666554358999999999999 78999999999999999998741 37899987543
No 317
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=96.10 E-value=0.0026 Score=44.23 Aligned_cols=37 Identities=16% Similarity=0.281 Sum_probs=33.8
Q ss_pred CCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 48 GRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 48 ~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
|+|.|+.|||+.+|+ ....+++-|+.|+..|+|....
T Consensus 22 g~~psv~EIa~~lgv---S~~TVrr~L~~Le~kG~I~R~~ 58 (77)
T 2jt1_A 22 GAPVKTRDIADAAGL---SIYQVRLYLEQLHDVGVLEKVN 58 (77)
T ss_dssp TSCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEES
T ss_pred CCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCcEEecC
Confidence 579999999999999 5678999999999999999874
No 318
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=96.10 E-value=0.0029 Score=46.10 Aligned_cols=52 Identities=10% Similarity=0.102 Sum_probs=42.7
Q ss_pred HHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 32 LKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 32 l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
+..-.++.|+..|.. +++.|..|||+.+|+ +...+.+.|+.|...|++....
T Consensus 21 l~~~~~~~il~~l~~-~~~~s~~ela~~l~i---s~~tvs~~l~~L~~~glv~~~~ 72 (99)
T 3cuo_A 21 MSHPKRLLILCMLSG-SPGTSAGELTRITGL---SASATSQHLARMRDEGLIDSQR 72 (99)
T ss_dssp HCSHHHHHHHHHHTT-CCSEEHHHHHHHHCC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred hCChHHHHHHHHHHh-CCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe
Confidence 333455667777765 358999999999999 6899999999999999998775
No 319
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=96.08 E-value=0.0028 Score=50.51 Aligned_cols=55 Identities=9% Similarity=0.174 Sum_probs=48.3
Q ss_pred HHHHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 28 SSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 28 ~~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
.+++|..-.++.|+..|.. +++|+.|||+.+|+ .+..+.+.|+.|...|+|+...
T Consensus 51 ~l~aL~~p~R~~IL~~L~~--~~~t~~eLa~~lgl---s~stvs~hL~~L~~aGlV~~~~ 105 (151)
T 3f6v_A 51 QLEVAAEPTRRRLVQLLTS--GEQTVNNLAAHFPA---SRSAISQHLRVLTEAGLVTPRK 105 (151)
T ss_dssp HHHHHTSHHHHHHHHHGGG--CCEEHHHHHTTSSS---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHhCCHHHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe
Confidence 4566667788889999986 79999999999999 6899999999999999998775
No 320
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=96.03 E-value=0.0035 Score=54.41 Aligned_cols=57 Identities=16% Similarity=0.360 Sum_probs=47.0
Q ss_pred cCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccc
Q 018205 38 LDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTS 105 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~ 105 (359)
+.|++.|...++++|+.|||+.+|+ ++..+.|+|+.|+..|++++.. .++|++++..
T Consensus 11 l~iL~~l~~~~~~~~~~ela~~~gl---~~stv~r~l~~L~~~G~v~~~~--------~~~Y~lg~~~ 67 (249)
T 1mkm_A 11 FEILDFIVKNPGDVSVSEIAEKFNM---SVSNAYKYMVVLEEKGFVLRKK--------DKRYVPGYKL 67 (249)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEECT--------TSCEEECTHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEECC--------CCcEEECHHH
Confidence 3456666654358999999999999 7899999999999999999873 5889998753
No 321
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=96.03 E-value=0.0037 Score=43.53 Aligned_cols=58 Identities=14% Similarity=0.221 Sum_probs=44.9
Q ss_pred hcCcchhcccCC--CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccc
Q 018205 37 ELDIPEVIHKHG--RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTL 103 (359)
Q Consensus 37 ~lglf~~L~~~~--~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~ 103 (359)
+..|++.|.+.+ .++|+.|||+++|+ +...+.+.|..|...|++...+. .++.|..++
T Consensus 16 ~~~IL~~L~~~~~~~~~t~~eLA~~Lgv---s~~tV~~~L~~L~~~G~I~~~g~------~~~~W~i~~ 75 (77)
T 1qgp_A 16 EQRILKFLEELGEGKATTAHDLSGKLGT---PKKEINRVLYSLAKKGKLQKEAG------TPPLWKIAV 75 (77)
T ss_dssp HHHHHHHHHHHCSSSCEEHHHHHHHHCC---CHHHHHHHHHHHHHHTSEEEECS------SSCEEEECC
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEecCC------CCCceEecC
Confidence 455666776631 37999999999999 67899999999999999988642 146676654
No 322
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=96.01 E-value=0.0036 Score=54.72 Aligned_cols=57 Identities=14% Similarity=0.294 Sum_probs=46.7
Q ss_pred cCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccc
Q 018205 38 LDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTS 105 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~ 105 (359)
+.|++.|...++++|+.|||+++|+ ++..+.|+|+.|+..|++.+.. +++|++++..
T Consensus 26 l~iL~~l~~~~~~~~~~eia~~~gl---~kstv~r~l~tL~~~G~v~~~~--------~~~Y~lg~~~ 82 (260)
T 2o0y_A 26 IDLLELFDAAHPTRSLKELVEGTKL---PKTTVVRLVATMCARSVLTSRA--------DGSYSLGPEM 82 (260)
T ss_dssp HHHHTTCBTTBSSBCHHHHHHHHCC---CHHHHHHHHHHHHHTTSEEECT--------TSCEEECHHH
T ss_pred HHHHHHHhhCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEECC--------CCeEEecHHH
Confidence 3456666543368999999999999 7899999999999999999875 3489998753
No 323
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=96.00 E-value=0.013 Score=45.29 Aligned_cols=78 Identities=13% Similarity=0.046 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhcCcchhcccCCCCCCHHHHHHhc-CCCCCCcccHHHHHHHHHccCceeeeccccccc
Q 018205 15 AQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSAL-EINPTKADGLFKLMRLLVHTGFFSTANVQSAQQ 93 (359)
Q Consensus 15 ~~~~l~~~~~g~~~~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~-~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~ 93 (359)
+....++++.+-|...+|... .. ++.++.||++.+ |+ ....|.+.|+.|+..|||++... +.
T Consensus 15 pi~~~l~~lg~kW~l~IL~~L---------~~--g~~rf~eL~~~l~gI---s~~~Ls~~L~~Le~~GLV~R~~~---~~ 77 (131)
T 4a5n_A 15 PVEFTLDVIGGKWKGILFYHM---------ID--GKKRFNEFRRICPSI---TQRMLTLQLRELEADGIVHREVY---HQ 77 (131)
T ss_dssp HHHHHHHHHCSSSHHHHHHHH---------TT--SCBCHHHHHHHCTTS---CHHHHHHHHHHHHHTTSEEEEEE---CS
T ss_pred cHHHHHHHHcCcCHHHHHHHH---------hc--CCcCHHHHHHHhccc---CHHHHHHHHHHHHHCCCEEEEec---CC
Confidence 466777888888877666543 23 699999999999 99 68999999999999999998742 11
Q ss_pred C-ccceEeccccccccc
Q 018205 94 Q-EEEAYALTLTSKLFL 109 (359)
Q Consensus 94 ~-~~~~~~~t~~~~~l~ 109 (359)
+ ..-.|++|+.++.+.
T Consensus 78 d~r~v~y~LT~~G~~l~ 94 (131)
T 4a5n_A 78 VPPKVEYSLTEFGRTLE 94 (131)
T ss_dssp SSCEEEEEECTTGGGGH
T ss_pred CCCeEEEEECHhHHHHH
Confidence 1 113599999887665
No 324
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=95.98 E-value=0.0041 Score=54.26 Aligned_cols=57 Identities=12% Similarity=0.194 Sum_probs=47.7
Q ss_pred cCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccccc
Q 018205 38 LDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSK 106 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~ 106 (359)
+.|++.|...+++.|+.|||+.+|+ ++..+.|+|+.|+..|++++. +++|++++...
T Consensus 17 l~iL~~l~~~~~~~~~~eia~~~gl---~~stv~r~l~~L~~~G~v~~~---------~~~Y~Lg~~~~ 73 (257)
T 2g7u_A 17 FAVLLAFDAQRPNPTLAELATEAGL---SRPAVRRILLTLQKLGYVAGS---------GGRWSLTPRVL 73 (257)
T ss_dssp HHHHHTCSSSCSSCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE---------TTEEEECGGGH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeC---------CCEEEEcHHHH
Confidence 3456667643468999999999999 789999999999999999987 48999988653
No 325
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=95.97 E-value=0.0065 Score=42.64 Aligned_cols=61 Identities=13% Similarity=0.235 Sum_probs=44.5
Q ss_pred hcCcchhcccC--CCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccccc
Q 018205 37 ELDIPEVIHKH--GRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSK 106 (359)
Q Consensus 37 ~lglf~~L~~~--~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~ 106 (359)
+..|++.|.+. |.++|+.|||+++|+ +...+.+.|..|...|+|...+. .++.|.+.+...
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgv---sr~tV~~~L~~Le~~G~I~~~g~------~~~~W~i~~~~~ 74 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGT---PKKEINRVLYSLAKKGKLQKEAG------TPPLWKIAVSTQ 74 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEESS------SSCEEEEC----
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEecCC------CCCeeEEeCcHH
Confidence 44566666653 137999999999999 67899999999999999987642 146787776543
No 326
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=95.75 E-value=0.0046 Score=54.17 Aligned_cols=56 Identities=20% Similarity=0.284 Sum_probs=47.2
Q ss_pred cCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccc
Q 018205 38 LDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTS 105 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~ 105 (359)
+.|++.|...++++|+.|||+++|+ ++..+.|+|+.|+..|++++. +++|++++..
T Consensus 24 l~iL~~l~~~~~~~~~~eia~~~gl---~~stv~r~l~tL~~~G~v~~~---------~~~Y~Lg~~~ 79 (265)
T 2ia2_A 24 LAVIRCFDHRNQRRTLSDVARATDL---TRATARRFLLTLVELGYVATD---------GSAFWLTPRV 79 (265)
T ss_dssp HHHHHTCCSSCSSEEHHHHHHHHTC---CHHHHHHHHHHHHHHTSEEES---------SSEEEECGGG
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEec---------CCEEEEcHHH
Confidence 3466777643468999999999999 789999999999999999986 4899998754
No 327
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=95.73 E-value=0.0037 Score=46.91 Aligned_cols=75 Identities=13% Similarity=0.188 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhcCcchhcccCCCCCC--HHHHHHhc-CCCCCCcccHHHHHHHHHccCceeeeccccc
Q 018205 15 AQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPIT--LPQLVSAL-EINPTKADGLFKLMRLLVHTGFFSTANVQSA 91 (359)
Q Consensus 15 ~~~~l~~~~~g~~~~~~l~~a~~lglf~~L~~~~~~~t--~~ela~~~-~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~ 91 (359)
+...+++.+.+.|...+|. .|.. ++.+ +.||++.+ |+ .+..+.+.|+.|+..|+|++...
T Consensus 16 ~~~~~l~~l~~~wrl~IL~---------~L~~--g~~~~~~~eL~~~l~gi---s~~~ls~~L~~Le~~GlV~r~~~--- 78 (111)
T 3df8_A 16 PSESVLHLLGKKYTMLIIS---------VLGN--GSTRQNFNDIRSSIPGI---SSTILSRRIKDLIDSGLVERRSG--- 78 (111)
T ss_dssp TTSSTHHHHHSTTHHHHHH---------HHTS--SSSCBCHHHHHHTSTTC---CHHHHHHHHHHHHHTTSEEEEES---
T ss_pred HHHHHHHHHcCccHHHHHH---------HHhc--CCCCCCHHHHHHHccCC---CHHHHHHHHHHHHHCCCEEEeec---
Confidence 3445566666777655554 3333 6777 99999999 99 68999999999999999998741
Q ss_pred ccCccceEeccccccccc
Q 018205 92 QQQEEEAYALTLTSKLFL 109 (359)
Q Consensus 92 ~~~~~~~~~~t~~~~~l~ 109 (359)
....|++|+.++.+.
T Consensus 79 ---r~~~y~LT~~G~~l~ 93 (111)
T 3df8_A 79 ---QITTYALTEKGMNVR 93 (111)
T ss_dssp ---SSEEEEECHHHHHHH
T ss_pred ---CcEEEEECccHHHHH
Confidence 135788888876544
No 328
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=95.72 E-value=0.006 Score=46.62 Aligned_cols=49 Identities=12% Similarity=0.197 Sum_probs=42.0
Q ss_pred HHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 34 CAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 34 ~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
.-.++.|+..|.+ ++.++.+||+.+|+ .+..+.+.|+.|...|++....
T Consensus 45 ~~~rl~IL~~L~~--~~~s~~ela~~lgi---s~stvs~~L~~Le~~Glv~~~~ 93 (122)
T 1r1t_A 45 DPNRLRLLSLLAR--SELCVGDLAQAIGV---SESAVSHQLRSLRNLRLVSYRK 93 (122)
T ss_dssp CHHHHHHHHHHTT--CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHHHHHHHc--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEE
Confidence 3456677777875 68999999999999 6899999999999999998764
No 329
>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*
Probab=95.66 E-value=0.017 Score=52.77 Aligned_cols=109 Identities=11% Similarity=0.108 Sum_probs=74.5
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccC------------CCCCCceEeeCCCCC--C-CC-Ccc
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKV------------PDTDNLKFIAGDMFQ--S-IP-PAD 254 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a------------~~~~~v~~~~~d~~~--~-~p-~~D 254 (359)
..++.+|||+.+|.|.=+..+++..++..++++|++. -++.. +...++.+...|... . .+ .||
T Consensus 146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD 225 (359)
T 4fzv_A 146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYD 225 (359)
T ss_dssp CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEE
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCC
Confidence 4567899999999999999999987776899999843 32211 123578888888743 1 22 499
Q ss_pred EEEE----cc----hh-------ccCCchH-------HHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcc
Q 018205 255 AFFF----KA----IF-------HAFVDED-------CLKILKRCREAIASRGDRGKVIIIDIVINEKKED 303 (359)
Q Consensus 255 ~i~~----~~----vl-------~~~~~~~-------~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~ 303 (359)
.|++ +. ++ ..+..++ -.++|+++.+.|+| ||.|+...........+
T Consensus 226 ~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkp---GG~LVYsTCSl~~~ENE 293 (359)
T 4fzv_A 226 RVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKP---GGHVVYSTCSLSHLQNE 293 (359)
T ss_dssp EEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEE---EEEEEEEESCCCTTTTH
T ss_pred EEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCC---CcEEEEEeCCCchhhCH
Confidence 9984 33 11 1122221 14689999999999 88888877776655443
No 330
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=95.65 E-value=0.0063 Score=42.55 Aligned_cols=59 Identities=14% Similarity=0.113 Sum_probs=45.7
Q ss_pred HHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccc
Q 018205 35 AVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLT 104 (359)
Q Consensus 35 a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~ 104 (359)
.....|.+.|.+ .+.|+.|||+++|+ ....+++.|..|+..|++..... .+-.|+++..
T Consensus 17 ~~~~~IL~lL~~--~g~sa~eLAk~Lgi---Sk~aVr~~L~~Le~eG~I~~~~~------~PP~W~~~~~ 75 (82)
T 1oyi_A 17 EIVCEAIKTIGI--EGATAAQLTRQLNM---EKREVNKALYDLQRSAMVYSSDD------IPPRWFMTTE 75 (82)
T ss_dssp HHHHHHHHHHSS--STEEHHHHHHHSSS---CHHHHHHHHHHHHHHTSSEECSS------SSCEEESCC-
T ss_pred HHHHHHHHHHHH--cCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeCCC------CCCcceeccC
Confidence 345566777876 34999999999999 67999999999999999988752 1456766654
No 331
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=95.64 E-value=0.016 Score=43.34 Aligned_cols=80 Identities=14% Similarity=0.110 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhcCcchhcccCCCCCCHHHHHHhc-CCCCCCcccHHHHHHHHHccCceeeeccccc
Q 018205 13 FEAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSAL-EINPTKADGLFKLMRLLVHTGFFSTANVQSA 91 (359)
Q Consensus 13 ~~~~~~l~~~~~g~~~~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~-~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~ 91 (359)
.-+...+++++.+.|...+|.. |.. ++.+..||++.+ ++ +...+.+.|+.|+..|+++....
T Consensus 9 ~c~~~~~l~~l~~~~~~~IL~~---------L~~--~~~~~~eLa~~l~~i---s~~tvs~~L~~Le~~GlI~r~~~--- 71 (112)
T 1z7u_A 9 QTSINLALSTINGKWKLSLMDE---------LFQ--GTKRNGELMRALDGI---TQRVLTDRLREMEKDGLVHRESF--- 71 (112)
T ss_dssp HHHHHHHHHTTCSTTHHHHHHH---------HHH--SCBCHHHHHHHSTTC---CHHHHHHHHHHHHHHTSEEEEEE---
T ss_pred CCCHHHHHHHHcCccHHHHHHH---------HHh--CCCCHHHHHHHhccC---CHHHHHHHHHHHHHCCCEEEeec---
Confidence 3345666776666666555543 333 589999999999 99 68999999999999999987641
Q ss_pred ccC-ccceEeccccccccc
Q 018205 92 QQQ-EEEAYALTLTSKLFL 109 (359)
Q Consensus 92 ~~~-~~~~~~~t~~~~~l~ 109 (359)
+.+ -.-.|.+|+.++.+.
T Consensus 72 ~~d~r~~~~~LT~~G~~~~ 90 (112)
T 1z7u_A 72 NELPPRVEYTLTPEGYALY 90 (112)
T ss_dssp CCSSCEEEEEECHHHHHHH
T ss_pred CCCCCeEEEEECHhHHHHH
Confidence 011 012488888776443
No 332
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=95.63 E-value=0.008 Score=44.69 Aligned_cols=76 Identities=14% Similarity=0.121 Sum_probs=53.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHhcCcchhcccCCCCCCHHHHHHhc-CCCCCCcccHHHHHHHHHccCceeeecccccccC-
Q 018205 17 AHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSAL-EINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQ- 94 (359)
Q Consensus 17 ~~l~~~~~g~~~~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~-~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~- 94 (359)
..+++++.+.|...+|. .|.. ++.++.||++.+ |+ ++..+.+.|+.|++.|++++.... .+
T Consensus 5 ~~~l~~l~~~~~~~IL~---------~L~~--~~~~~~eLa~~l~~i---s~~tls~~L~~Le~~GlI~r~~~~---~d~ 67 (107)
T 2hzt_A 5 EATLEVIGGKWKXVILX---------HLTH--GKKRTSELKRLMPNI---TQKMLTQQLRELEADGVINRIVYN---QVP 67 (107)
T ss_dssp HHHHHHHCSTTHHHHHH---------HHTT--CCBCHHHHHHHCTTS---CHHHHHHHHHHHHHTTSEEEEEEC---SSS
T ss_pred HHHHHHHcCccHHHHHH---------HHHh--CCCCHHHHHHHhcCC---CHHHHHHHHHHHHHCCCEEEeecC---CCC
Confidence 44555555566555443 3333 689999999999 99 689999999999999999976421 11
Q ss_pred ccceEeccccccccc
Q 018205 95 EEEAYALTLTSKLFL 109 (359)
Q Consensus 95 ~~~~~~~t~~~~~l~ 109 (359)
..-.|++|+.++.+.
T Consensus 68 r~~~y~LT~~G~~l~ 82 (107)
T 2hzt_A 68 PKVEYELSEYGRSLE 82 (107)
T ss_dssp CEEEEEECTTGGGGH
T ss_pred CeEEEEECccHHHHH
Confidence 112588888775443
No 333
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.55 E-value=0.1 Score=52.11 Aligned_cols=148 Identities=13% Similarity=0.163 Sum_probs=99.6
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCC--------CCeEEEeeccccccc-CC-----------------------------C
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFP--------GIKCTVLDLPHVVPK-VP-----------------------------D 235 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p--------~~~~~~~D~~~~~~~-a~-----------------------------~ 235 (359)
+...||-+|||.=.....|...+| ++.++=+|.|++++. .+ .
T Consensus 107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~p~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 186 (695)
T 2zwa_A 107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDYSDLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFLT 186 (695)
T ss_dssp SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEECHHHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCEE
T ss_pred CCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECccHHHHHHHHHHHHcChHHHHhhcccccccccccccccccc
Confidence 457899999999999999987755 677888888875531 10 0
Q ss_pred CCCceEeeCCCCCC--C-----------CC-ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCC
Q 018205 236 TDNLKFIAGDMFQS--I-----------PP-ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKK 301 (359)
Q Consensus 236 ~~~v~~~~~d~~~~--~-----------p~-~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~ 301 (359)
.++..++..|+.+. + +. .=++++=.+|.+++.++..++|+.+.+ + + ++.+++.|...+...
T Consensus 187 s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~-~-~---~~~~~~~e~~~~~~~ 261 (695)
T 2zwa_A 187 TPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSK-M-E---NSHFIILEQLIPKGP 261 (695)
T ss_dssp CSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHT-S-S---SEEEEEEEECCTTCT
T ss_pred CCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhh-C-C---CceEEEEEeecCCCC
Confidence 14789999999651 1 11 225677789999999999999999985 4 5 588889898877544
Q ss_pred cchHHHHHHHhhhhhhhhh-cC--CcccCHHHHHHHHHHcCCceeEEEEe
Q 018205 302 EDAQLTEAKLLYDMLMMVA-VR--GSERTEKEWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~-~~--g~~~t~~~~~~ll~~aGf~~~~~~~~ 348 (359)
.+. +... +...+..... .. ....+.++..+.|.+.||..+....+
T Consensus 262 ~d~-f~~~-m~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~Gw~~v~~~~~ 309 (695)
T 2zwa_A 262 FEP-FSKQ-MLAHFKRNDSPLQSVLKYNTIESQVQRFNKLGFAYVNVGDM 309 (695)
T ss_dssp TSH-HHHH-HHHHHHHTTCCCCGGGTCCSHHHHHHHHHHTTCCEEEEEEH
T ss_pred CCh-HHHH-HHHHHHHcCCCCCccccCCCHHHHHHHHHHCCCCCcceeeH
Confidence 432 2211 1111111100 01 12447999999999999987666543
No 334
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=95.54 E-value=0.012 Score=53.59 Aligned_cols=54 Identities=13% Similarity=0.194 Sum_probs=42.2
Q ss_pred CCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC---CCCCceEeeCCCCC
Q 018205 195 LGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP---DTDNLKFIAGDMFQ 248 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~---~~~~v~~~~~d~~~ 248 (359)
...|||||.|.|.++..|+++....+++++|+.. .+...+ ..++++++.+|+++
T Consensus 59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~ 116 (353)
T 1i4w_A 59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD 116 (353)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCccc
Confidence 5889999999999999999875445799999843 443222 35789999999964
No 335
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=95.54 E-value=0.015 Score=44.68 Aligned_cols=48 Identities=17% Similarity=0.231 Sum_probs=39.2
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccc
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTS 105 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~ 105 (359)
++.|+++||+.+|+ +...++++|+.|...|+++..++ ..|.|++++..
T Consensus 25 ~~~s~~ela~~~~i---~~~~v~~il~~L~~~Glv~~~~g------~~ggy~L~~~~ 72 (129)
T 2y75_A 25 GPTSLKSIAQTNNL---SEHYLEQLVSPLRNAGLVKSIRG------AYGGYVLGSEP 72 (129)
T ss_dssp CCBCHHHHHHHTTS---CHHHHHHHHHHHHHTTSEEEC----------CCEEESSCG
T ss_pred CcCCHHHHHHHHCc---CHHHHHHHHHHHHHCCceEecCC------CCCceEeCCCH
Confidence 68999999999999 78999999999999999987641 13678877643
No 336
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=95.42 E-value=0.017 Score=45.00 Aligned_cols=68 Identities=12% Similarity=0.098 Sum_probs=44.8
Q ss_pred HHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc-cceEeccccccccc
Q 018205 35 AVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE-EEAYALTLTSKLFL 109 (359)
Q Consensus 35 a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~-~~~~~~t~~~~~l~ 109 (359)
..++.++..|... ++.|..+||+.+++ +...+.+.++.|+..|++++.... .|. .-.+.+|+.++.+.
T Consensus 37 ~~~~~vL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~L~~~Glv~r~~~~---~DrR~~~~~LT~~G~~~~ 105 (142)
T 3ech_A 37 PPDVHVLKLIDEQ-RGLNLQDLGRQMCR---DKALITRKIRELEGRNLVRRERNP---SDQRSFQLFLTDEGLAIH 105 (142)
T ss_dssp HHHHHHHHHHHHT-TTCCHHHHHHHHC------CHHHHHHHHHHHTTSEEC-------------CCEECHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEeeccCC---CCCCeeeeEECHHHHHHH
Confidence 4556677777764 69999999999999 678999999999999999986410 000 01266676665443
No 337
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=95.41 E-value=0.01 Score=41.25 Aligned_cols=43 Identities=9% Similarity=0.130 Sum_probs=38.2
Q ss_pred cchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeee
Q 018205 40 IPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTA 86 (359)
Q Consensus 40 lf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~ 86 (359)
|.+.|.+. +.++++|||+.+++ .+..++|-|+.|+..|++.+.
T Consensus 7 Il~~L~~~-g~vsv~eLa~~l~V---S~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 7 VRDLLALR-GRMEAAQISQTLNT---PQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHS-CSBCHHHHHHHTTC---CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHc-CCCcHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEe
Confidence 45666664 79999999999999 689999999999999999987
No 338
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=95.36 E-value=0.011 Score=43.01 Aligned_cols=47 Identities=11% Similarity=0.174 Sum_probs=42.8
Q ss_pred CCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccccccc
Q 018205 51 ITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFL 109 (359)
Q Consensus 51 ~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
++..+||..+|+ +.+.+++.++.|...|+++... +.|.+|+.+..+.
T Consensus 21 ~~~t~La~~~~l---s~~~~~~~l~~L~~~GLI~~~~---------~~~~LT~kG~~~l 67 (95)
T 1r7j_A 21 SPKTRIMYGANL---SYALTGRYIKMLMDLEIIRQEG---------KQYMLTKKGEELL 67 (95)
T ss_dssp BCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET---------TEEEECHHHHHHH
T ss_pred CCHHHHHHHhCc---CHHHHHHHHHHHHHCCCeEEEC---------CeeEEChhHHHHH
Confidence 899999999999 6899999999999999999984 7799999987554
No 339
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=95.16 E-value=0.0065 Score=44.22 Aligned_cols=71 Identities=20% Similarity=0.227 Sum_probs=50.9
Q ss_pred HHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccccc
Q 018205 30 TSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSK 106 (359)
Q Consensus 30 ~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~ 106 (359)
.++..-.++.|+..|... ++.|..+||+.+|+ ++..+.+.|+.|...|++...... .......|++|+.+.
T Consensus 11 ~~l~~~~~~~iL~~L~~~-~~~~~~ela~~l~i---s~~tvs~~l~~L~~~gli~~~~~~--~~~r~~~~~lt~~g~ 81 (100)
T 1ub9_A 11 HILGNPVRLGIMIFLLPR-RKAPFSQIQKVLDL---TPGNLDSHIRVLERNGLVKTYKVI--ADRPRTVVEITDFGM 81 (100)
T ss_dssp HHHHSHHHHHHHHHHHHH-SEEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEEEC--SSSCEEEEEECHHHH
T ss_pred cccCChHHHHHHHHHHhc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEecC--CCcceEEEEECHHHH
Confidence 455555667777777542 68999999999999 689999999999999999865310 000123577777653
No 340
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=95.12 E-value=0.011 Score=42.04 Aligned_cols=44 Identities=9% Similarity=0.117 Sum_probs=38.4
Q ss_pred cchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 40 IPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 40 lf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
|.+.|.+. +.++++|||+.+++ .+..++|.|+.|+..|++.+..
T Consensus 7 Il~~L~~~-g~vsv~eLA~~l~V---S~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 7 VRDMLALQ-GRMEAKQLSARLQT---PQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHHHS-CSEEHHHHHHHTTC---CHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHc-CCCcHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe
Confidence 45666664 79999999999999 6899999999999999999873
No 341
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=95.10 E-value=0.027 Score=45.08 Aligned_cols=48 Identities=19% Similarity=0.270 Sum_probs=40.9
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccc
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTS 105 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~ 105 (359)
++.|+++||+.+++ ++..++++|..|...|++...++. .|.|++++..
T Consensus 43 ~~~s~~eIA~~~~i---~~~~l~kil~~L~~aGlv~s~rG~------~GGy~Lar~p 90 (159)
T 3lwf_A 43 GPISLRSIAQDKNL---SEHYLEQLIGPLRNAGIVKSIRGA------HGGYVLNGDP 90 (159)
T ss_dssp CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEECST------TCEEEECSCT
T ss_pred CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCeEEEecCC------CCceEecCCH
Confidence 68999999999999 789999999999999999877531 4789887643
No 342
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=95.08 E-value=0.011 Score=45.80 Aligned_cols=77 Identities=13% Similarity=0.163 Sum_probs=55.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhcCcchhcccCCCCCCHHHHHHhc-CCCCCCcccHHHHHHHHHccCceeeecccccccC
Q 018205 16 QAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSAL-EINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQ 94 (359)
Q Consensus 16 ~~~l~~~~~g~~~~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~-~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~ 94 (359)
...+++++.+.|...+|.. |.. ++.++.||++.+ |+ .+..+.+.|+.|+..|+|++.... .+
T Consensus 25 ~~~~l~~l~~~w~l~IL~~---------L~~--g~~~~~eLa~~l~gi---s~~tls~~L~~Le~~GlV~r~~~~---~d 87 (131)
T 1yyv_A 25 SREVLKHVTSRWGVLILVA---------LRD--GTHRFSDLRRXMGGV---SEXMLAQSLQALEQDGFLNRVSYP---VV 87 (131)
T ss_dssp HHHHHHHHHSHHHHHHHHH---------GGG--CCEEHHHHHHHSTTC---CHHHHHHHHHHHHHHTCEEEEEEC---SS
T ss_pred HHHHHHHHcCCcHHHHHHH---------HHc--CCCCHHHHHHHhccC---CHHHHHHHHHHHHHCCcEEEEecC---CC
Confidence 4556666666666554433 333 699999999999 79 689999999999999999976410 01
Q ss_pred -ccceEeccccccccc
Q 018205 95 -EEEAYALTLTSKLFL 109 (359)
Q Consensus 95 -~~~~~~~t~~~~~l~ 109 (359)
..-.|++|+.++.+.
T Consensus 88 ~r~~~y~LT~~G~~l~ 103 (131)
T 1yyv_A 88 PPHVEYSLTPLGEQVS 103 (131)
T ss_dssp SCEEEEEECHHHHHHH
T ss_pred CCeEEEEECccHHHHH
Confidence 012588998776544
No 343
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=95.05 E-value=0.011 Score=46.22 Aligned_cols=50 Identities=14% Similarity=0.169 Sum_probs=43.8
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccccccc
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFL 109 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
++.|+.+||+.+|+ +...+.+.++.|+..|++.... ...|.+|+.+..+.
T Consensus 21 ~~~~~~ela~~l~v---s~~tvs~~l~~Le~~Glv~r~~--------~~~~~LT~~g~~~~ 70 (142)
T 1on2_A 21 GYARVSDIAEALAV---HPSSVTKMVQKLDKDEYLIYEK--------YRGLVLTSKGKKIG 70 (142)
T ss_dssp SSCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEET--------TTEEEECHHHHHHH
T ss_pred CCCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEee--------CceEEEchhHHHHH
Confidence 68999999999999 6899999999999999999875 47899998776443
No 344
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=95.00 E-value=0.0098 Score=41.84 Aligned_cols=49 Identities=20% Similarity=0.373 Sum_probs=41.2
Q ss_pred HhcCcchhcccCC-CCCCHHHHHHhc-----CCCCCCcccHHHHHHHHHccCceeeec
Q 018205 36 VELDIPEVIHKHG-RPITLPQLVSAL-----EINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 36 ~~lglf~~L~~~~-~~~t~~ela~~~-----~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
-+..|++.|.+.+ ++.|++||++.+ ++ +...+.|.|+.|+..|++.+..
T Consensus 18 ~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~i---s~~TVyR~L~~L~~~Glv~~~~ 72 (83)
T 2fu4_A 18 PRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEI---GLATVYRVLNQFDDAGIVTRHN 72 (83)
T ss_dssp HHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCC---CHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCC---CHhhHHHHHHHHHHCCCeEEEe
Confidence 3455777887643 689999999999 88 6899999999999999998764
No 345
>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}
Probab=95.00 E-value=0.13 Score=40.44 Aligned_cols=55 Identities=16% Similarity=0.232 Sum_probs=43.0
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCCCCCceEeeCCCCC
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPDTDNLKFIAGDMFQ 248 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~ 248 (359)
-..-|+|+|=|+|.+=..+.+.+|+.+++++|..-.+.-....+.-.++.||+.+
T Consensus 40 ~~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~~~~hp~~~P~~e~~ilGdi~~ 94 (174)
T 3iht_A 40 LSGPVYELGLGNGRTYHHLRQHVQGREIYVFERAVASHPDSTPPEAQLILGDIRE 94 (174)
T ss_dssp CCSCEEEECCTTCHHHHHHHHHCCSSCEEEEESSCCCCGGGCCCGGGEEESCHHH
T ss_pred CCCceEEecCCCChhHHHHHHhCCCCcEEEEEeeeccCCCCCCchHheecccHHH
Confidence 3578999999999999999999999999999974333333334455788888854
No 346
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=94.99 E-value=0.026 Score=41.78 Aligned_cols=78 Identities=18% Similarity=0.213 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhcCcchhcccCCCCCCHHHHHHhc-CCCCCCcccHHHHHHHHHccCceeeeccccccc
Q 018205 15 AQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSAL-EINPTKADGLFKLMRLLVHTGFFSTANVQSAQQ 93 (359)
Q Consensus 15 ~~~~l~~~~~g~~~~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~-~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~ 93 (359)
+...+++++.+.|...+|. .|.. ++.++.||++.+ |+ +...+.+.|+.|+..|++++.... .
T Consensus 14 ~~~~~l~~l~~~~~~~IL~---------~L~~--~~~~~~eL~~~l~gi---s~~~ls~~L~~Le~~GlV~r~~~~---~ 76 (107)
T 2fsw_A 14 PVRKSMQIFAGKWTLLIIF---------QINR--RIIRYGELKRAIPGI---SEKMLIDELKFLCGKGLIKKKQYP---E 76 (107)
T ss_dssp HHHHHHHHHTSSSHHHHHH---------HHTT--SCEEHHHHHHHSTTC---CHHHHHHHHHHHHHTTSEEEEEEC---S
T ss_pred CHHHHHHHHcCccHHHHHH---------HHHh--CCcCHHHHHHHcccC---CHHHHHHHHHHHHHCCCEEEeecC---C
Confidence 3556667777777665554 3333 689999999999 59 689999999999999999976421 1
Q ss_pred C-ccceEeccccccccc
Q 018205 94 Q-EEEAYALTLTSKLFL 109 (359)
Q Consensus 94 ~-~~~~~~~t~~~~~l~ 109 (359)
+ ..-.|.+|+.++.+.
T Consensus 77 d~r~~~y~LT~~G~~l~ 93 (107)
T 2fsw_A 77 VPPRVEYSLTPLGEKVL 93 (107)
T ss_dssp SSCEEEEEECHHHHTTH
T ss_pred CCCeeEEEECccHHHHH
Confidence 1 012488898876543
No 347
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=94.97 E-value=0.023 Score=39.73 Aligned_cols=44 Identities=18% Similarity=0.268 Sum_probs=37.2
Q ss_pred CcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeee
Q 018205 39 DIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTA 86 (359)
Q Consensus 39 glf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~ 86 (359)
.|++.|.+. ++.|..|||+.+|+ +...+++.|+.|...|++...
T Consensus 4 ~Il~~L~~~-~~~s~~eLa~~lgv---s~~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 4 EILEFLNRH-NGGKTAEIAEALAV---TDYQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp HHHHHHHHS-CCCCHHHHHHHHTS---CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEe
Confidence 355566553 68999999999999 689999999999999999854
No 348
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=94.93 E-value=0.018 Score=45.31 Aligned_cols=66 Identities=8% Similarity=0.100 Sum_probs=46.1
Q ss_pred HhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccc---eEeccccccccc
Q 018205 36 VELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEE---AYALTLTSKLFL 109 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~---~~~~t~~~~~l~ 109 (359)
.++.++..|...++++|..+||+.+++ +...+.++++.|+..|++++.... .+. .+.+|+.++.+.
T Consensus 40 ~q~~vL~~l~~~~~~~t~~eLa~~l~i---~~~tvs~~l~~Le~~Glv~r~~~~-----~D~R~~~~~LT~~G~~~~ 108 (150)
T 3fm5_A 40 RSYSVLVLACEQAEGVNQRGVAATMGL---DPSQIVGLVDELEERGLVVRTLDP-----SDRRNKLIAATEEGRRLR 108 (150)
T ss_dssp HHHHHHHHHHHSTTCCCSHHHHHHHTC---CHHHHHHHHHHHHTTTSEEC----------------CEECHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHCC---CHhHHHHHHHHHHHCCCEEeeCCc-----cccchheeeECHHHHHHH
Confidence 345556666544457899999999999 689999999999999999876410 012 267777766444
No 349
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=94.85 E-value=0.031 Score=44.16 Aligned_cols=61 Identities=13% Similarity=0.062 Sum_probs=45.6
Q ss_pred HHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccc
Q 018205 30 TSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTS 105 (359)
Q Consensus 30 ~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~ 105 (359)
.+|++.+.+... . +++.|+++||+.+++ +...++++|..|...|+++..++ .|.|++++..
T Consensus 15 yAl~~L~~La~~---~--~~~~~~~~iA~~~~i---~~~~l~kil~~L~~~Glv~s~rG-------~GGy~L~~~p 75 (149)
T 1ylf_A 15 IAVHILSILKNN---P--SSLCTSDYMAESVNT---NPVVIRKIMSYLKQAGFVYVNRG-------PGGAGLLKDL 75 (149)
T ss_dssp HHHHHHHHHHHS---C--GGGCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEC----------CCEEESSCG
T ss_pred HHHHHHHHHHhC---C--CCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEEccC-------CCceEeCCCh
Confidence 455555554431 2 258999999999999 78999999999999999987652 4788887653
No 350
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=94.84 E-value=0.01 Score=48.77 Aligned_cols=73 Identities=18% Similarity=0.328 Sum_probs=52.3
Q ss_pred HHHHHHHHhcCcchhcccCCCCCCHHHHHHhcC-CCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccccc
Q 018205 29 STSLKCAVELDIPEVIHKHGRPITLPQLVSALE-INPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSK 106 (359)
Q Consensus 29 ~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~-~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~ 106 (359)
+++|.-=.++.|+..|.+ ++.|+.+|++.++ + ++..+.+.|+.|...|||+..++..........|++++.+.
T Consensus 17 ~~~La~P~Rl~il~~L~~--~~~~~~~l~~~l~~~---~~~~~s~Hl~~L~~aglv~~~~e~~~~g~~er~y~~~~~~~ 90 (182)
T 4g6q_A 17 VDLLHHPLRWRITQLLIG--RSLTTRELAELLPDV---ATTTLYRQVGILVKAGVLMVTAEHQVRGAVERTYTLNTQAG 90 (182)
T ss_dssp HHHTTSHHHHHHHHHTTT--SCEEHHHHHHHCTTB---CHHHHHHHHHHHHHHTSEEEEEEEEETTEEEEEEEECTTTT
T ss_pred HHHhCCHHHHHHHHHHHh--CCCCHHHHHHHhcCC---CHHHHHHHHHHHHHCCCeEEEEeecccCcceeEEEeccccc
Confidence 344455577888888876 7999999999996 7 67899999999999999986543211111123477666543
No 351
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=94.82 E-value=0.019 Score=51.15 Aligned_cols=40 Identities=15% Similarity=0.027 Sum_probs=33.5
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP 234 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~ 234 (359)
.+...|||++||+|.++..+++. +.+++++|+++ +++.|+
T Consensus 234 ~~~~~vlD~f~GsGt~~~~a~~~--g~~~~g~e~~~~~~~~a~ 274 (297)
T 2zig_A 234 FVGDVVLDPFAGTGTTLIAAARW--GRRALGVELVPRYAQLAK 274 (297)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHH
Confidence 45689999999999999998876 67899999954 777665
No 352
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=94.81 E-value=0.018 Score=39.13 Aligned_cols=56 Identities=21% Similarity=0.294 Sum_probs=47.6
Q ss_pred HhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecc
Q 018205 36 VELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALT 102 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t 102 (359)
.+-.|+++|.++|.|++..+||+.+|+ +..-+...|..|-..|.+.... .-.|+++
T Consensus 20 ~eekVLe~LkeaG~PlkageIae~~Gv---dKKeVdKaik~LKkEgkI~SPk--------RCyw~~~ 75 (80)
T 2lnb_A 20 LEQRILQVLTEAGSPVKLAQLVKECQA---PKRELNQVLYRMKKELKVSLTS--------PATWCLG 75 (80)
T ss_dssp HHHHHHHHHHHHTSCEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEE--------TTEEEES
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCC---CHHHHHHHHHHHHHcCCccCCC--------CceeeCC
Confidence 355677888887899999999999999 7899999999999999998775 4667765
No 353
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=94.79 E-value=0.041 Score=44.15 Aligned_cols=49 Identities=14% Similarity=0.297 Sum_probs=41.3
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccccc
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSK 106 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~ 106 (359)
++.|.++||+.+++ +...+++++..|...||++..++ ..|.|++.+...
T Consensus 27 ~~~s~~~IA~~~~i---s~~~l~kil~~L~~aGlv~s~rG------~~GGy~Lar~p~ 75 (162)
T 3k69_A 27 SKVASRELAQSLHL---NPVMIRNILSVLHKHGYLTGTVG------KNGGYQLDLALA 75 (162)
T ss_dssp SCBCHHHHHHHHTS---CGGGTHHHHHHHHHTTSSEEECS------TTCEEECCSCGG
T ss_pred CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeecC------CCCCeEecCChh
Confidence 68999999999999 68999999999999999987652 146799876443
No 354
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=94.74 E-value=0.031 Score=43.88 Aligned_cols=48 Identities=17% Similarity=0.221 Sum_probs=40.6
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccc
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTS 105 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~ 105 (359)
++.|+++||+.+++ +...++++|..|...|+++..++ ..|.|++++..
T Consensus 27 ~~~s~~~IA~~~~i---~~~~l~kil~~L~~aGlv~s~rG------~~GGy~Lar~p 74 (143)
T 3t8r_A 27 GCISLKSIAEENNL---SDLYLEQLVGPLRNAGLIRSVRG------AKGGYQLRVPA 74 (143)
T ss_dssp CCEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEECSS------SSSEEEESSCG
T ss_pred CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCEEEecCC------CCCCeeecCCc
Confidence 58999999999999 78999999999999999987652 14789887643
No 355
>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}
Probab=94.64 E-value=0.11 Score=50.14 Aligned_cols=100 Identities=15% Similarity=0.123 Sum_probs=64.5
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHC-------------CCCeEEEeec-ccccccCC------CCCCceEeeCCCCC-CC-
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAF-------------PGIKCTVLDL-PHVVPKVP------DTDNLKFIAGDMFQ-SI- 250 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~-------------p~~~~~~~D~-~~~~~~a~------~~~~v~~~~~d~~~-~~- 250 (359)
....+|+|-.||+|.++....+.. ...+++|+|+ +.+...|+ ..+.-.+..+|.+. +.
T Consensus 216 ~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I~~~dtL~~~~~ 295 (530)
T 3ufb_A 216 QLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRIDPENSLRFPLR 295 (530)
T ss_dssp CTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEEECSCTTCSCGG
T ss_pred CCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccccccccccccCchh
Confidence 445799999999999988765532 1346999999 44655554 12334677788754 21
Q ss_pred -----CCccEEEEcchhc---------cCC-----chHHHHHHHHHHHhcc-------cCCCCcEEEEEee
Q 018205 251 -----PPADAFFFKAIFH---------AFV-----DEDCLKILKRCREAIA-------SRGDRGKVIIIDI 295 (359)
Q Consensus 251 -----p~~D~i~~~~vl~---------~~~-----~~~~~~~L~~~~~~L~-------p~~~gG~lli~~~ 295 (359)
..||+|+++=-+- .++ .+....+++.+.+.|+ | ||++.++-+
T Consensus 296 ~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~---gGr~avVlP 363 (530)
T 3ufb_A 296 EMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDN---GGRAAVVVP 363 (530)
T ss_dssp GCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSS---CCEEEEEEE
T ss_pred hhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCC---CceEEEEec
Confidence 1499999763221 111 1112357888888887 5 788888654
No 356
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=94.58 E-value=0.012 Score=43.11 Aligned_cols=48 Identities=8% Similarity=0.200 Sum_probs=38.1
Q ss_pred HHHhcCcchh-cccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 34 CAVELDIPEV-IHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 34 ~a~~lglf~~-L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
.-.++.|+.. +.. ++.++.|||+.+|+ .+..+.+.|+.|... ++....
T Consensus 26 ~~~Rl~IL~~l~~~--~~~~~~ela~~l~i---s~stvs~hL~~L~~~-lv~~~~ 74 (99)
T 2zkz_A 26 HPMRLKIVNELYKH--KALNVTQIIQILKL---PQSTVSQHLCKMRGK-VLKRNR 74 (99)
T ss_dssp SHHHHHHHHHHHHH--SCEEHHHHHHHHTC---CHHHHHHHHHHHBTT-TBEEEE
T ss_pred CHHHHHHHHHHHHC--CCcCHHHHHHHHCc---CHHHHHHHHHHHHHH-hhhheE
Confidence 3445556633 334 68999999999999 689999999999999 998664
No 357
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=94.54 E-value=0.017 Score=43.67 Aligned_cols=48 Identities=17% Similarity=0.323 Sum_probs=40.6
Q ss_pred HHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 35 AVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 35 a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
-.++.|+..|.+ ++.|+.+||+.+|+ ++..+.+.|+.|+..|++....
T Consensus 32 ~~~~~il~~L~~--~~~s~~ela~~l~i---s~stvsr~l~~Le~~Glv~~~~ 79 (119)
T 2lkp_A 32 PSRLMILTQLRN--GPLPVTDLAEAIGM---EQSAVSHQLRVLRNLGLVVGDR 79 (119)
T ss_dssp HHHHHHHHHHHH--CCCCHHHHHHHHSS---CHHHHHHHHHHHHHHCSEEEEE
T ss_pred HHHHHHHHHHHH--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe
Confidence 345666666766 58999999999999 7899999999999999998764
No 358
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=94.46 E-value=0.025 Score=44.55 Aligned_cols=77 Identities=17% Similarity=0.187 Sum_probs=55.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc
Q 018205 16 QAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE 95 (359)
Q Consensus 16 ~~~l~~~~~g~~~~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~ 95 (359)
..+.++++.+.|...+|... .. ++.++.||++.+|+ ....+.+.|+.|++.|++++.... .+.
T Consensus 14 ~~~~l~~l~~~w~l~IL~~L---------~~--g~~~~~eLa~~lgi---s~~tls~~L~~Le~~GlI~r~~~~---~d~ 76 (146)
T 2f2e_A 14 VARPLDVIGDGWSMLIVRDA---------FE--GLTRFGEFQKSLGL---AKNILAARLRNLVEHGVMVAVPAE---SGS 76 (146)
T ss_dssp TTTTHHHHCSSSHHHHHHHH---------HT--TCCSHHHHHHHHCC---CHHHHHHHHHHHHHTTSEEEEECS---SSS
T ss_pred HHHHHHHhCCchHHHHHHHH---------Hh--CCCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEEecC---CCC
Confidence 34456666666665555433 23 68999999999999 689999999999999999987421 011
Q ss_pred cceEeccccccccc
Q 018205 96 EEAYALTLTSKLFL 109 (359)
Q Consensus 96 ~~~~~~t~~~~~l~ 109 (359)
.-.|++|+.++.+.
T Consensus 77 ~~~y~LT~~G~~l~ 90 (146)
T 2f2e_A 77 HQEYRLTDKGRALF 90 (146)
T ss_dssp CEEEEECHHHHTTH
T ss_pred eEEEEECchHHHHH
Confidence 23688888776544
No 359
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=94.41 E-value=0.016 Score=42.16 Aligned_cols=62 Identities=18% Similarity=0.292 Sum_probs=45.9
Q ss_pred CcchhcccCCCCCCHHHH----HHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccccccc
Q 018205 39 DIPEVIHKHGRPITLPQL----VSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFL 109 (359)
Q Consensus 39 glf~~L~~~~~~~t~~el----a~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
.++..|... ++.|..+| |+.+++ +...+.++++.|+..|++++.... ....|.+|+.++.+.
T Consensus 12 ~iL~~l~~~-~~~~~~el~~~la~~l~i---s~~tvs~~l~~Le~~gli~r~~~~-----r~~~~~LT~~G~~~~ 77 (99)
T 1tbx_A 12 IVLAYLYDN-EGIATYDLYKKVNAEFPM---STATFYDAKKFLIQEGFVKERQER-----GEKRLYLTEKGKLFA 77 (99)
T ss_dssp HHHHHHTTC-TTCBHHHHHHHHHTTSCC---CHHHHHHHHHHHHHTTSEEEEEET-----TEEEEEECHHHHHHH
T ss_pred HHHHHHHHc-CCcCHHHHHHHHHHHcCC---CHHHHHHHHHHHHHCCCEEEEecC-----CceEEEECHHHHHHH
Confidence 344555442 68999999 999999 689999999999999999886411 024577777766444
No 360
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=94.21 E-value=0.019 Score=43.88 Aligned_cols=47 Identities=11% Similarity=0.208 Sum_probs=39.3
Q ss_pred hcCcchhcccCCCC-CCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeee
Q 018205 37 ELDIPEVIHKHGRP-ITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTA 86 (359)
Q Consensus 37 ~lglf~~L~~~~~~-~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~ 86 (359)
+..|+..|.+.++| +|+.|||+.+++ +...+.|.|+.|+..|++.+.
T Consensus 28 e~~il~~L~~~~~~~~t~~eLa~~l~~---s~sTV~r~L~~L~~~GlV~r~ 75 (123)
T 3r0a_A 28 DLNVMKSFLNEPDRWIDTDALSKSLKL---DVSTVQRSVKKLHEKEILQRS 75 (123)
T ss_dssp HHHHHHHHHHSTTCCEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEee
Confidence 44566666654456 999999999999 789999999999999999876
No 361
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=94.16 E-value=0.019 Score=49.51 Aligned_cols=62 Identities=13% Similarity=0.206 Sum_probs=49.1
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccccccc
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFL 109 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
.+.|+..|... +++|..|||+.+|+ ++..+.|.|+.|...|++++.+. ...|++|+.+..+.
T Consensus 154 ~~~IL~~L~~~-~~~s~~eLA~~lgl---sksTv~r~L~~Le~~GlV~r~~r-------~~~~~LT~~G~~l~ 215 (244)
T 2wte_A 154 EMKLLNVLYET-KGTGITELAKMLDK---SEKTLINKIAELKKFGILTQKGK-------DRKVELNELGLNVI 215 (244)
T ss_dssp HHHHHHHHHHH-TCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEETT-------TTEEEECHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeCC-------ccEEEECHHHHHHH
Confidence 34455555442 68999999999999 78999999999999999998631 46799998776543
No 362
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=94.05 E-value=0.062 Score=42.81 Aligned_cols=66 Identities=15% Similarity=0.136 Sum_probs=48.6
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc-cceEeccccccccc
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE-EEAYALTLTSKLFL 109 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~-~~~~~~t~~~~~l~ 109 (359)
++.|+..|... +++|..+||+.+++ +...+.++++.|+..|+|++.... .|. .-.+.+|+.++.+.
T Consensus 48 q~~iL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~---~DrR~~~l~LT~~G~~~~ 114 (162)
T 3k0l_A 48 QFTALSVLAAK-PNLSNAKLAERSFI---KPQSANKILQDLLANGWIEKAPDP---THGRRILVTVTPSGLDKL 114 (162)
T ss_dssp HHHHHHHHHHC-TTCCHHHHHHHHTS---CGGGHHHHHHHHHHTTSEEEEECC---SSSCCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCcCeEecCCC---CcCCeeEeEECHhHHHHH
Confidence 34566667664 68999999999999 689999999999999999987411 110 11377787776544
No 363
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=94.05 E-value=0.027 Score=43.76 Aligned_cols=49 Identities=14% Similarity=0.249 Sum_probs=42.2
Q ss_pred CCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccccccc
Q 018205 48 GRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLF 108 (359)
Q Consensus 48 ~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~~l 108 (359)
+++.|..+||+.+|+ +...+.+.++.|+..|+++... ..|.+|+.+..+
T Consensus 29 ~~~~s~~ela~~l~i---s~~tv~~~l~~Le~~Gli~r~~---------~~~~Lt~~g~~~ 77 (139)
T 2x4h_A 29 GEGAKINRIAKDLKI---APSSVFEEVSHLEEKGLVKKKE---------DGVWITNNGTRS 77 (139)
T ss_dssp TSCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET---------TEEEECHHHHHH
T ss_pred CCCcCHHHHHHHhCC---ChHHHHHHHHHHHHCCCEEecC---------CeEEEChhHHHH
Confidence 368999999999999 6899999999999999999873 678888876543
No 364
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=93.97 E-value=0.037 Score=46.17 Aligned_cols=70 Identities=16% Similarity=0.259 Sum_probs=48.8
Q ss_pred HHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccc
Q 018205 31 SLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTS 105 (359)
Q Consensus 31 ~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~ 105 (359)
+|..-.++.|+..|.. +|+|+.+|++.+|+ +...+.+.|+.|...|++.........+...-.|++|+..
T Consensus 11 aL~~~~rl~IL~~L~~--~~~s~~eLa~~l~i---s~stvs~hLk~Le~~GLV~~~~~~~~~g~~~~~Y~Lt~~~ 80 (202)
T 2p4w_A 11 VLGNETRRRILFLLTK--RPYFVSELSRELGV---GQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKGL 80 (202)
T ss_dssp HHHSHHHHHHHHHHHH--SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTTE
T ss_pred HhCCHHHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCceEEEeeccCCCCceEEEEEChHH
Confidence 4444455566666655 79999999999999 6899999999999999998764210000112247776644
No 365
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=93.82 E-value=0.032 Score=40.30 Aligned_cols=49 Identities=8% Similarity=0.088 Sum_probs=39.4
Q ss_pred CCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccc---eEeccccccccc
Q 018205 50 PITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEE---AYALTLTSKLFL 109 (359)
Q Consensus 50 ~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~---~~~~t~~~~~l~ 109 (359)
++|..+||+.+++ +...+.++++.|+..|++.... ++ .+++|+.++.+.
T Consensus 30 ~~t~~eLa~~l~i---~~~tvs~~l~~Le~~Glv~~~~--------d~R~~~v~LT~~G~~~~ 81 (95)
T 2qvo_A 30 DVYIQYIASKVNS---PHSYVWLIIKKFEEAKMVECEL--------EGRTKIIRLTDKGQKIA 81 (95)
T ss_dssp CEEHHHHHHHSSS---CHHHHHHHHHHHHHTTSEEEEE--------ETTEEEEEECHHHHHHH
T ss_pred CcCHHHHHHHHCc---CHHHHHHHHHHHHHCcCccCCC--------CCCeEEEEEChhHHHHH
Confidence 4899999999999 6899999999999999994332 33 478887776443
No 366
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=93.71 E-value=0.058 Score=43.33 Aligned_cols=66 Identities=18% Similarity=0.247 Sum_probs=48.0
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc-cceEeccccccccc
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE-EEAYALTLTSKLFL 109 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~-~~~~~~t~~~~~l~ 109 (359)
++.|+..|... ++.|..+||+.+++ +...+.+.++.|+..|+|++.... .+. .-.+.+|+.++.+.
T Consensus 47 ~~~iL~~L~~~-~~~t~~eLa~~l~i---s~~tvs~~l~~Le~~GlV~r~~~~---~DrR~~~~~LT~~G~~~~ 113 (168)
T 2nyx_A 47 QFRTLVILSNH-GPINLATLATLLGV---QPSATGRMVDRLVGAELIDRLPHP---TSRRELLAALTKRGRDVV 113 (168)
T ss_dssp HHHHHHHHHHH-CSEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEECS---SCSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEeccCC---CCCCeeEEEECHHHHHHH
Confidence 44566666653 68999999999999 689999999999999999886410 010 11377777776444
No 367
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=93.63 E-value=0.037 Score=39.91 Aligned_cols=61 Identities=16% Similarity=0.238 Sum_probs=42.7
Q ss_pred chhcccCCCCCCHHHHHHhcCCCCCCccc-HHHHHHHHHccCceeeecccccccC-ccceEeccccccccc
Q 018205 41 PEVIHKHGRPITLPQLVSALEINPTKADG-LFKLMRLLVHTGFFSTANVQSAQQQ-EEEAYALTLTSKLFL 109 (359)
Q Consensus 41 f~~L~~~~~~~t~~ela~~~~~~~~~~~~-l~~~L~~L~~~gll~~~~~~~~~~~-~~~~~~~t~~~~~l~ 109 (359)
+..|...+.+.|..|||+.+++ +... +.+.++.|+..|++..... + -...+.+|+.++.+.
T Consensus 21 L~~l~~~~~~~t~~eLa~~l~i---s~~t~vs~~l~~Le~~Glv~~~~~-----drR~~~~~LT~~G~~~~ 83 (95)
T 2pg4_A 21 LLEFEKKGYEPSLAEIVKASGV---SEKTFFMGLKDRLIRAGLVKEETL-----SYRVKTLKLTEKGRRLA 83 (95)
T ss_dssp HHHHHHTTCCCCHHHHHHHHCC---CHHHHHTTHHHHHHHTTSEEEEEE-----ETTEEEEEECHHHHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHCC---CchHHHHHHHHHHHHCCCeecCCC-----CCCeEEEEECHhHHHHH
Confidence 3344443237999999999999 6788 9999999999999984321 0 012366777665443
No 368
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=93.60 E-value=0.035 Score=42.95 Aligned_cols=66 Identities=18% Similarity=0.241 Sum_probs=48.7
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc-cceEeccccccccc
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE-EEAYALTLTSKLFL 109 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~-~~~~~~t~~~~~l~ 109 (359)
++.++..|... ++.|..+||+.+++ +...+.+.++.|+..|+++.... +.+. .-.|.+|+.+..+.
T Consensus 33 ~~~iL~~l~~~-~~~~~~ela~~l~i---s~~~vs~~l~~L~~~gli~~~~~---~~d~r~~~~~lT~~G~~~~ 99 (142)
T 3bdd_A 33 RYSILQTLLKD-APLHQLALQERLQI---DRAAVTRHLKLLEESGYIIRKRN---PDNQREVLVWPTEQAREAL 99 (142)
T ss_dssp HHHHHHHHHHH-CSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEC---SSSTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecCC---CCCCCeeEEEECHHHHHHH
Confidence 44566667653 68999999999999 68999999999999999987641 0110 12477787776554
No 369
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=93.51 E-value=0.066 Score=38.69 Aligned_cols=54 Identities=15% Similarity=0.236 Sum_probs=42.0
Q ss_pred CCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccccccc
Q 018205 48 GRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLF 108 (359)
Q Consensus 48 ~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~~l 108 (359)
+++.+..+||+.+++ +...|.|.|..|+..||++.... .++.+...+|+.++.+
T Consensus 34 g~~~s~~eLa~~l~l---~~stLsR~l~rLe~~GLV~r~~~----~D~R~~v~LT~~G~~~ 87 (96)
T 2obp_A 34 ATPWSLPKIAKRAQL---PMSVLRRVLTQLQAAGLADVSVE----ADGRGHASLTQEGAAL 87 (96)
T ss_dssp CCCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEC----TTSCEEEEECHHHHHH
T ss_pred CCCcCHHHHHHHhCC---chhhHHHHHHHHHHCCCEEeecC----CCCceeEEECHHHHHH
Confidence 368899999999999 78999999999999999997541 2233445666666533
No 370
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=93.45 E-value=0.068 Score=41.95 Aligned_cols=45 Identities=7% Similarity=0.101 Sum_probs=38.8
Q ss_pred CHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccccc
Q 018205 52 TLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSK 106 (359)
Q Consensus 52 t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~ 106 (359)
|+++||+.+++ +...++++|..|...|||...++ .|.|++++...
T Consensus 25 s~~~IA~~~~i---~~~~l~kIl~~L~~aGlv~s~rG-------~GGy~Lar~p~ 69 (145)
T 1xd7_A 25 SSEIIADSVNT---NPVVVRRMISLLKKADILTSRAG-------VPGASLKKDPA 69 (145)
T ss_dssp CHHHHHHHHTS---CHHHHHHHHHHHHHTTSEECCSS-------SSSCEESSCGG
T ss_pred CHHHHHHHHCc---CHHHHHHHHHHHHHCCceEeecC-------CCCceecCCHH
Confidence 99999999999 78999999999999999987752 47788876543
No 371
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=93.44 E-value=0.13 Score=40.17 Aligned_cols=43 Identities=7% Similarity=0.174 Sum_probs=37.6
Q ss_pred cCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceee
Q 018205 38 LDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFST 85 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~ 85 (359)
..++..| . .++.|..+||+.+++ +...+.+.++.|+..|+++.
T Consensus 41 ~~iL~~l-~-~~~~t~~eLa~~l~~---~~~~vs~~l~~Le~~Glv~r 83 (151)
T 3kp7_A 41 SHVLNML-S-IEALTVGQITEKQGV---NKAAVSRRVKKLLNAELVKL 83 (151)
T ss_dssp HHHHHHH-H-HSCBCHHHHHHHHCS---CSSHHHHHHHHHHHTTSEEC
T ss_pred HHHHHHH-H-cCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEe
Confidence 4467777 4 379999999999999 67999999999999999997
No 372
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=93.38 E-value=0.038 Score=43.77 Aligned_cols=49 Identities=12% Similarity=0.153 Sum_probs=42.0
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccccccc
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLF 108 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~~l 108 (359)
++.|..+||+.+|+ +...+.+.++.|+..|+|+... +..+.+|+.+..+
T Consensus 53 ~~~~~~~la~~l~v---s~~tvs~~l~~Le~~Glv~r~~--------~~~~~lT~~g~~~ 101 (155)
T 2h09_A 53 GEARQVDMAARLGV---SQPTVAKMLKRLATMGLIEMIP--------WRGVFLTAEGEKL 101 (155)
T ss_dssp SCCCHHHHHHHHTS---CHHHHHHHHHHHHHTTCEEEET--------TTEEEECHHHHHH
T ss_pred CCcCHHHHHHHhCc---CHHHHHHHHHHHHHCCCEEEec--------CCceEEChhHHHH
Confidence 68999999999999 6899999999999999998875 4678888776543
No 373
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=93.37 E-value=0.017 Score=49.25 Aligned_cols=52 Identities=13% Similarity=0.175 Sum_probs=44.0
Q ss_pred HHHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceee
Q 018205 29 STSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFST 85 (359)
Q Consensus 29 ~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~ 85 (359)
+.+|..-.++.|+..|.. +|+|+.|||+.+|+ .+..+.+.|+.|...|++..
T Consensus 6 lkaL~~~~R~~IL~~L~~--g~~s~~ELa~~lgl---S~stVs~hL~~Le~aGLV~~ 57 (232)
T 2qlz_A 6 FYILGNKVRRDLLSHLTC--MECYFSLLSSKVSV---SSTAVAKHLKIMEREGVLQS 57 (232)
T ss_dssp HHHHTSHHHHHHHHHHTT--TTTCSSSSCTTCCC---CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHhCCHHHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEE
Confidence 344555566777888875 79999999999999 67999999999999999987
No 374
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=93.28 E-value=0.021 Score=45.95 Aligned_cols=67 Identities=18% Similarity=0.202 Sum_probs=47.2
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc-cceEeccccccccc
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE-EEAYALTLTSKLFL 109 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~-~~~~~~t~~~~~l~ 109 (359)
++.|+..|...++++|..+||+.+++ +...+.++++.|+..|+|++.... .|. .-.+.+|+.++.+.
T Consensus 55 q~~vL~~L~~~~~~~t~~eLa~~l~i---~~~tvs~~l~~Le~~GlV~r~~~~---~DrR~~~l~LT~~G~~~~ 122 (166)
T 3deu_A 55 HWVTLHNIHQLPPDQSQIQLAKAIGI---EQPSLVRTLDQLEDKGLISRQTCA---SDRRAKRIKLTEKAEPLI 122 (166)
T ss_dssp HHHHHHHHHHSCSSEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEC-----------CEEEECGGGHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCC---CHhhHHHHHHHHHHCCCEEeeCCC---CCCCeeEEEECHHHHHHH
Confidence 45556666553468999999999999 789999999999999999986410 010 12367777766444
No 375
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=93.19 E-value=0.025 Score=43.65 Aligned_cols=66 Identities=12% Similarity=0.250 Sum_probs=47.1
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc-cceEeccccccccc
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE-EEAYALTLTSKLFL 109 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~-~~~~~~t~~~~~l~ 109 (359)
++.++..|... ++.|..+||+.+++ +...+.+.++.|+..|++...... .+. .-.+.+|+.++.+.
T Consensus 35 ~~~iL~~l~~~-~~~~~~ela~~l~~---~~~tvs~~l~~L~~~gli~r~~~~---~d~r~~~~~lT~~G~~~~ 101 (139)
T 3bja_A 35 QFGVIQVLAKS-GKVSMSKLIENMGC---VPSNMTTMIQRMKRDGYVMTEKNP---NDQRETLVYLTKKGEETK 101 (139)
T ss_dssp HHHHHHHHHHS-CSEEHHHHHHHCSS---CCTTHHHHHHHHHHTTSEEEEECS---SCTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCC---ChhHHHHHHHHHHHCCCeeeccCC---CCCceeEEEECHHHHHHH
Confidence 44556666653 68999999999999 678999999999999999876310 010 11266777665443
No 376
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=93.19 E-value=0.023 Score=43.94 Aligned_cols=66 Identities=12% Similarity=0.082 Sum_probs=47.6
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc-cceEeccccccccc
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE-EEAYALTLTSKLFL 109 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~-~~~~~~t~~~~~l~ 109 (359)
++.|+..|... ++.|..+||+.+++ +...+.+.++.|+..|+++..... .+. .-.+.+|+.++.+.
T Consensus 40 ~~~iL~~l~~~-~~~t~~ela~~l~~---~~~tvs~~l~~L~~~glv~r~~~~---~d~R~~~~~lT~~G~~~~ 106 (140)
T 2nnn_A 40 QWAALVRLGET-GPCPQNQLGRLTAM---DAATIKGVVERLDKRGLIQRSADP---DDGRRLLVSLSPAGRAEL 106 (140)
T ss_dssp HHHHHHHHHHH-SSBCHHHHHHHTTC---CHHHHHHHHHHHHHTTCEEEEEET---TEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeeCCC---CCCCeeeeEECHhHHHHH
Confidence 45567777553 69999999999999 689999999999999999876310 000 11367777665443
No 377
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=93.09 E-value=0.023 Score=44.51 Aligned_cols=67 Identities=12% Similarity=0.177 Sum_probs=46.1
Q ss_pred HhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc-cceEeccccccccc
Q 018205 36 VELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE-EEAYALTLTSKLFL 109 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~-~~~~~~t~~~~~l~ 109 (359)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|++++... +.|. ...+.+|+.++.+.
T Consensus 41 ~~~~iL~~l~~~-~~~t~~ela~~l~~---~~~tvs~~l~~Le~~Glv~r~~~---~~D~R~~~~~lT~~G~~~~ 108 (148)
T 3nrv_A 41 TEWRIISVLSSA-SDCSVQKISDILGL---DKAAVSRTVKKLEEKKYIEVNGH---SEDKRTYAINLTEMGQELY 108 (148)
T ss_dssp HHHHHHHHHHHS-SSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEC------------CCBEECHHHHHHH
T ss_pred HHHHHHHHHHcC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeecC---CCCcceeEeEECHhHHHHH
Confidence 344566666654 69999999999999 68999999999999999987631 0010 12366676665433
No 378
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=93.07 E-value=0.033 Score=43.98 Aligned_cols=66 Identities=8% Similarity=0.148 Sum_probs=47.3
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccC-ccceEeccccccccc
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQ-EEEAYALTLTSKLFL 109 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~-~~~~~~~t~~~~~l~ 109 (359)
++.|+..|... ++.|..+||+.+++ +...+.++++.|+..|++++.... .+ -.-.+.+|+.++.+.
T Consensus 45 ~~~iL~~l~~~-~~~t~~ela~~l~i---~~~tvs~~l~~Le~~Glv~r~~~~---~d~R~~~~~lT~~G~~~~ 111 (155)
T 3cdh_A 45 EWRVLACLVDN-DAMMITRLAKLSLM---EQSRMTRIVDQMDARGLVTRVADA---KDKRRVRVRLTDDGRALA 111 (155)
T ss_dssp HHHHHHHHSSC-SCBCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEECC---------CCCEEECHHHHHHH
T ss_pred HHHHHHHHHHC-CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeccCC---CcCCeeEeEECHHHHHHH
Confidence 34566666653 68999999999999 689999999999999999876310 00 012377777765443
No 379
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=93.00 E-value=0.028 Score=43.31 Aligned_cols=47 Identities=17% Similarity=0.310 Sum_probs=39.1
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
++.++..|... ++.|..+||+.+++ +...+.+.++.|+..|+++...
T Consensus 31 ~~~iL~~l~~~-~~~~~~ela~~l~~---s~~tvs~~l~~L~~~glv~~~~ 77 (138)
T 3bpv_A 31 QVACLLRIHRE-PGIKQDELATFFHV---DKGTIARTLRRLEESGFIEREQ 77 (138)
T ss_dssp HHHHHHHHHHS-TTCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeec
Confidence 34455666553 68999999999999 6899999999999999999863
No 380
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=92.98 E-value=0.025 Score=44.98 Aligned_cols=67 Identities=15% Similarity=0.199 Sum_probs=46.6
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc-cceEeccccccccc
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE-EEAYALTLTSKLFL 109 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~-~~~~~~t~~~~~l~ 109 (359)
++.|+..|...+++.|..+||+.+++ +...+.++++.|+..|++++.... .+. .-.+.+|+.++.+.
T Consensus 49 ~~~iL~~L~~~~~~~~~~ela~~l~i---~~~tvs~~l~~Le~~Gli~r~~~~---~d~R~~~~~lT~~G~~~~ 116 (160)
T 3boq_A 49 KFDAMAQLARNPDGLSMGKLSGALKV---TNGNVSGLVNRLIKDGMVVKAMSA---DDRRSFSAKLTDAGLTTF 116 (160)
T ss_dssp HHHHHHHHHHCTTCEEHHHHHHHCSS---CCSCHHHHHHHHHHHTSEEEC-----------CEEEECHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCC---ChhhHHHHHHHHHHCCCEEeecCC---CCCCeEEEEEChhHHHHH
Confidence 45567777322379999999999999 678999999999999999986310 000 11266777665443
No 381
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=92.96 E-value=0.034 Score=42.97 Aligned_cols=66 Identities=12% Similarity=0.156 Sum_probs=46.0
Q ss_pred cCcchhcccCCC-CCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc-cceEeccccccccc
Q 018205 38 LDIPEVIHKHGR-PITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE-EEAYALTLTSKLFL 109 (359)
Q Consensus 38 lglf~~L~~~~~-~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~-~~~~~~t~~~~~l~ 109 (359)
..++..|...++ +.|..+||+.+++ +...+.+.++.|+..|+++..... .+. .-.+.+|+.+..+.
T Consensus 37 ~~iL~~l~~~~~~~~~~~ela~~l~~---~~~tvs~~l~~Le~~Gli~r~~~~---~d~R~~~i~lT~~G~~~~ 104 (141)
T 3bro_A 37 MTIIDYLSRNKNKEVLQRDLESEFSI---KSSTATVLLQRMEIKKLLYRKVSG---KDSRQKCLKLTKKANKLE 104 (141)
T ss_dssp HHHHHHHHHTTTSCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECS---SCTTSEEEEECHHHHTTH
T ss_pred HHHHHHHHHCCCCCcCHHHHHHHHCC---CcchHHHHHHHHHHCCCEEeeCCC---cCCCeeeeEECHHHHHHH
Confidence 345555655322 8999999999999 689999999999999999876410 010 11366676665443
No 382
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=92.93 E-value=0.073 Score=44.80 Aligned_cols=51 Identities=14% Similarity=0.247 Sum_probs=44.6
Q ss_pred CCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccccccc
Q 018205 48 GRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFL 109 (359)
Q Consensus 48 ~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
+++++..+||+.+++ +...+.+.++.|...|++++.. ...+.+|+.++.+.
T Consensus 18 ~~~~~~~~lA~~l~v---s~~tvs~~l~~Le~~GlV~r~~--------~~~i~LT~~G~~~~ 68 (214)
T 3hrs_A 18 HNKITNKEIAQLMQV---SPPAVTEMMKKLLAEELLIKDK--------KAGYLLTDLGLKLV 68 (214)
T ss_dssp CSCCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET--------TTEEEECHHHHHHH
T ss_pred CCCcCHHHHHHHHCC---ChhHHHHHHHHHHHCCCEEEec--------CCCeEECHHHHHHH
Confidence 479999999999999 6899999999999999999986 57789998876443
No 383
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=92.82 E-value=0.025 Score=43.73 Aligned_cols=67 Identities=15% Similarity=0.112 Sum_probs=47.2
Q ss_pred hcCcchhcccCC-CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc-cceEeccccccccc
Q 018205 37 ELDIPEVIHKHG-RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE-EEAYALTLTSKLFL 109 (359)
Q Consensus 37 ~lglf~~L~~~~-~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~-~~~~~~t~~~~~l~ 109 (359)
++.++..|...+ ++.|..+||+.+++ +...+.+.++.|+..|++++... +.|. .-.+.+|+.++.+.
T Consensus 33 ~~~vL~~l~~~~~~~~t~~ela~~l~~---~~~tvs~~l~~Le~~Gli~r~~~---~~D~R~~~~~LT~~G~~~~ 101 (139)
T 3eco_A 33 QGHTLGYLYAHQQDGLTQNDIAKALQR---TGPTVSNLLRNLERKKLIYRYVD---AQDTRRKNIGLTTSGIKLV 101 (139)
T ss_dssp HHHHHHHHHHSTTTCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEC---CC--CCEEEEECHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcCHHHHHHHhCC---CcccHHHHHHHHHHCCCEeecCC---CCCCCeeeeEECHHHHHHH
Confidence 344555665532 48999999999999 68999999999999999997641 1110 11366777665444
No 384
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=92.77 E-value=0.039 Score=42.50 Aligned_cols=66 Identities=17% Similarity=0.161 Sum_probs=46.8
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc-cceEeccccccccc
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE-EEAYALTLTSKLFL 109 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~-~~~~~~t~~~~~l~ 109 (359)
++.++..|... ++.|..+||+.+++ +...+.+.++.|+..|+++..... .+. .-.+.+|+.++.+.
T Consensus 36 ~~~iL~~l~~~-~~~~~~~la~~l~~---~~~tvs~~l~~L~~~gli~r~~~~---~d~R~~~~~lT~~G~~~~ 102 (138)
T 1jgs_A 36 QFKVLCSIRCA-ACITPVELKKVLSV---DLGALTRMLDRLVCKGWVERLPNP---NDKRGVLVKLTTGGAAIC 102 (138)
T ss_dssp HHHHHHHHHHH-SSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECT---TCSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHhc-CCCCHHHHHHHHCC---ChHHHHHHHHHHHHCCCEEecCCc---ccCceeEeEEChhHHHHH
Confidence 34455555543 68999999999999 689999999999999999986410 010 01367777766444
No 385
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=92.73 E-value=0.13 Score=40.37 Aligned_cols=65 Identities=12% Similarity=0.221 Sum_probs=46.4
Q ss_pred cCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc-cceEeccccccccc
Q 018205 38 LDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE-EEAYALTLTSKLFL 109 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~-~~~~~~t~~~~~l~ 109 (359)
+.|+..|... ++.|..+||+.+++ +...+.+.++.|+..|+++..... .+. .-.+.+|+.++.+.
T Consensus 40 ~~iL~~l~~~-~~~t~~ela~~l~~---s~~tvs~~l~~Le~~glv~r~~~~---~d~R~~~~~lT~~G~~~~ 105 (155)
T 1s3j_A 40 LFVLASLKKH-GSLKVSEIAERMEV---KPSAVTLMADRLEQKNLIARTHNT---KDRRVIDLSLTDEGDIKF 105 (155)
T ss_dssp HHHHHHHHHH-SEEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEECS---SCTTSEEEEECHHHHHHH
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeecCCC---CCCceEEEEECHHHHHHH
Confidence 3456666553 68999999999999 689999999999999999886410 010 11366777665443
No 386
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=92.72 E-value=0.041 Score=44.15 Aligned_cols=65 Identities=17% Similarity=0.189 Sum_probs=44.4
Q ss_pred hcCcchhcccC-CCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccc---eEeccccccccc
Q 018205 37 ELDIPEVIHKH-GRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEE---AYALTLTSKLFL 109 (359)
Q Consensus 37 ~lglf~~L~~~-~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~---~~~~t~~~~~l~ 109 (359)
++.|+..|... ++++|..+||+.+++ +...+.++++.|+..|+|++.... .+. .+.+|+.++.+.
T Consensus 48 q~~vL~~l~~~~~~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~-----~DrR~~~l~LT~~G~~~~ 116 (168)
T 3u2r_A 48 QYNTLRLLRSVHPEGMATLQIADRLIS---RAPDITRLIDRLDDRGLVLRTRKP-----ENRRVVEVALTDAGLKLL 116 (168)
T ss_dssp HHHHHHHHHHHTTSCEEHHHHHHHC------CTHHHHHHHHHHHTTSEEEEEET-----TEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcCHHHHHHHHCC---ChhhHHHHHHHHHHCCCEeecCCC-----CCCCeeEeEECHHHHHHH
Confidence 44455566553 269999999999999 678999999999999999986411 022 366676665443
No 387
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=92.65 E-value=0.12 Score=40.21 Aligned_cols=67 Identities=12% Similarity=0.114 Sum_probs=48.5
Q ss_pred HhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc-cceEeccccccccc
Q 018205 36 VELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE-EEAYALTLTSKLFL 109 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~-~~~~~~t~~~~~l~ 109 (359)
.++.++..|... ++.|..+||+.+++ +...+.++++.|+..|++++... +.|. .-.+.+|+.++.+.
T Consensus 32 ~q~~iL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~---~~D~R~~~~~LT~~G~~~~ 99 (145)
T 3g3z_A 32 NLFAVLYTLATE-GSRTQKHIGEKWSL---PKQTVSGVCKTLAGQGLIEWQEG---EQDRRKRLLSLTETGKAYA 99 (145)
T ss_dssp HHHHHHHHHHHH-CSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEECCC---SSCGGGSCEEECHHHHHHH
T ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeeccC---CCCCceeeeeEChhHHHHH
Confidence 345566666553 58999999999999 68999999999999999997641 0110 12377777766443
No 388
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=92.63 E-value=0.03 Score=44.04 Aligned_cols=67 Identities=15% Similarity=0.218 Sum_probs=46.5
Q ss_pred HhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc-cceEeccccccccc
Q 018205 36 VELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE-EEAYALTLTSKLFL 109 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~-~~~~~~t~~~~~l~ 109 (359)
.++.|+..|... ++.|..+||+.+++ +...+.++++.|+..|+|++.... .|. .-.+.+|+.++.+.
T Consensus 42 ~q~~iL~~l~~~-~~~~~~eLa~~l~~---~~~~vs~~l~~L~~~Glv~r~~~~---~D~R~~~~~LT~~G~~~~ 109 (149)
T 4hbl_A 42 SQYLVMLTLWEE-NPQTLNSIGRHLDL---SSNTLTPMLKRLEQSGWVKRERQQ---SDKRQLIITLTDNGQQQQ 109 (149)
T ss_dssp HHHHHHHHHHHS-SSEEHHHHHHHHTC---CHHHHHHHHHHHHHHTSEEC------------CEEEECSHHHHHH
T ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeeCCCC---CCcceeeeeECHHHHHHH
Confidence 345556666653 79999999999999 689999999999999999976410 010 12367777665443
No 389
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=92.63 E-value=0.16 Score=39.35 Aligned_cols=64 Identities=9% Similarity=0.159 Sum_probs=48.0
Q ss_pred HhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccc---eEeccccccccc
Q 018205 36 VELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEE---AYALTLTSKLFL 109 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~---~~~~t~~~~~l~ 109 (359)
.++.++..|... ++ |..+||+.+++ ++..+.+.++.|+..|++++.... .+. .+.+|+.++.+.
T Consensus 38 ~~~~iL~~l~~~-~~-~~~~la~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~-----~D~R~~~~~LT~~G~~~~ 104 (144)
T 3f3x_A 38 LDFSILKATSEE-PR-SMVYLANRYFV---TQSAITAAVDKLEAKGLVRRIRDS-----KDRRIVIVEITPKGRQVL 104 (144)
T ss_dssp HHHHHHHHHHHS-CE-EHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEET-----TEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHC-CC-CHHHHHHHHCC---ChhHHHHHHHHHHHCCCEEeccCC-----CCCceEEEEECHHHHHHH
Confidence 345667777663 34 99999999999 689999999999999999987410 011 378888776544
No 390
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=92.53 E-value=0.04 Score=43.43 Aligned_cols=66 Identities=15% Similarity=0.188 Sum_probs=47.3
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceee--ecccccccCc-cceEeccccccccc
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFST--ANVQSAQQQE-EEAYALTLTSKLFL 109 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~--~~~~~~~~~~-~~~~~~t~~~~~l~ 109 (359)
++.++..|... +++|..+||+.+++ +...+.++++.|+..|++++ ... +.+. .-.+.+|+.++.+.
T Consensus 43 ~~~iL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~---~~d~R~~~~~LT~~G~~~~ 111 (154)
T 2qww_A 43 QLAMINVIYST-PGISVADLTKRLII---TGSSAAANVDGLISLGLVVKLNKTI---PNDSMDLTLKLSKKGEDLS 111 (154)
T ss_dssp HHHHHHHHHHS-TTEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEESCC-----CTTCTTCEEEECHHHHHHH
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecCcCC---CCCCceeEeEECHHHHHHH
Confidence 44556666654 68999999999999 68999999999999999998 421 0110 12477777766443
No 391
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=92.47 E-value=0.023 Score=44.23 Aligned_cols=66 Identities=11% Similarity=0.128 Sum_probs=47.4
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc-cceEeccccccccc
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE-EEAYALTLTSKLFL 109 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~-~~~~~~t~~~~~l~ 109 (359)
++.++..|... ++.|..+||+.+++ +...+.++++.|+..|++++... +.|. .-.+.+|+.++.+.
T Consensus 39 ~~~iL~~l~~~-~~~t~~eLa~~l~~---~~~~vs~~l~~L~~~Glv~r~~~---~~D~R~~~~~LT~~G~~~~ 105 (143)
T 3oop_A 39 QWSVLEGIEAN-EPISQKEIALWTKK---DTPTVNRIVDVLLRKELIVREIS---TEDRRISLLSLTDKGRKET 105 (143)
T ss_dssp HHHHHHHHHHH-SSEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC-------CCSCEEEECHHHHHHH
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCC---CHhhHHHHHHHHHHCCCeeccCC---CccCceeeeeECHHHHHHH
Confidence 34455666553 69999999999999 68999999999999999997641 0110 12377777766444
No 392
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=92.46 E-value=0.03 Score=44.01 Aligned_cols=65 Identities=20% Similarity=0.257 Sum_probs=46.9
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc-cceEecccccccc
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE-EEAYALTLTSKLF 108 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~-~~~~~~t~~~~~l 108 (359)
++.++..|... ++.|..+||+.+++ +...+.+.++.|+..|+++..... .+. .-.+.+|+.++.+
T Consensus 42 ~~~iL~~l~~~-~~~t~~ela~~l~~---~~~~vs~~l~~Le~~Glv~r~~~~---~d~R~~~~~lT~~G~~~ 107 (152)
T 3bj6_A 42 QRAILEGLSLT-PGATAPQLGAALQM---KRQYISRILQEVQRAGLIERRTNP---EHARSHRYWLTPRGEAI 107 (152)
T ss_dssp HHHHHHHHHHS-TTEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEECCS---SSTTSCEEEECHHHHHH
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeeecCCc---ccccceeeEEChhhHHH
Confidence 34456666653 68999999999999 689999999999999999986410 010 1146677766543
No 393
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=92.44 E-value=0.07 Score=41.53 Aligned_cols=68 Identities=21% Similarity=0.262 Sum_probs=47.8
Q ss_pred HhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc-cceEeccccccccc
Q 018205 36 VELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE-EEAYALTLTSKLFL 109 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~-~~~~~~t~~~~~l~ 109 (359)
.++.++..|...+++.|..+||+.+|+ +...+.+.++.|+..|++++.... .+. .-.+.+|+.+..+.
T Consensus 36 ~~~~iL~~l~~~~~~~~~~~la~~l~i---~~~~vs~~l~~Le~~glv~r~~~~---~d~R~~~~~lT~~G~~~~ 104 (147)
T 2hr3_A 36 SQLVVLGAIDRLGGDVTPSELAAAERM---RSSNLAALLRELERGGLIVRHADP---QDGRRTRVSLSSEGRRNL 104 (147)
T ss_dssp HHHHHHHHHHHTTSCBCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEC---------CCEEEECHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHhCC---ChhhHHHHHHHHHHCCCEeeCCCC---CCCCceeeEECHHHHHHH
Confidence 445666677651269999999999999 689999999999999999876310 010 12366777665433
No 394
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=92.41 E-value=0.046 Score=42.50 Aligned_cols=66 Identities=9% Similarity=0.101 Sum_probs=47.3
Q ss_pred HhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc-cceEeccccccccc
Q 018205 36 VELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE-EEAYALTLTSKLFL 109 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~-~~~~~~t~~~~~l~ 109 (359)
.++.++..|. . ++.|..+||+.+++ +...+.+.++.|+..|+++..... .+. .-.+.+|+.+..+.
T Consensus 38 ~~~~iL~~l~-~-~~~~~~ela~~l~~---s~~tvs~~l~~Le~~glv~r~~~~---~d~r~~~~~lT~~G~~~~ 104 (146)
T 2gxg_A 38 LDFLVLRATS-D-GPKTMAYLANRYFV---TQSAITASVDKLEEMGLVVRVRDR---EDRRKILIEITEKGLETF 104 (146)
T ss_dssp HHHHHHHHHT-T-SCBCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEECS---SCTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHh-c-CCcCHHHHHHHhCC---CchhHHHHHHHHHHCCCEEeecCC---CCCceEEEEECHHHHHHH
Confidence 3445566666 2 79999999999999 689999999999999999876410 010 11366777665443
No 395
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=92.35 E-value=0.043 Score=40.74 Aligned_cols=47 Identities=26% Similarity=0.432 Sum_probs=38.2
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeee
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTA 86 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~ 86 (359)
++.|+..+...|.+.|..+||+.+|+ +...+++.|+.|...|+++..
T Consensus 20 ~l~Il~~l~~~g~~~s~~eLa~~lgv---s~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 20 VIDVLRILLDKGTEMTDEEIANQLNI---KVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp THHHHHHHHHHCSCBCHHHHHHTTTS---CHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEE
Confidence 34455555332348999999999999 689999999999999999876
No 396
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=92.22 E-value=0.059 Score=39.45 Aligned_cols=47 Identities=13% Similarity=0.310 Sum_probs=38.7
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
+..|+..|... ++.|..+||+.+|+ +...+.+.|+.|...|++....
T Consensus 22 ~~~il~~l~~~-~~~s~~ela~~l~i---s~~tv~~~l~~L~~~glv~~~~ 68 (109)
T 1sfx_A 22 DVRIYSLLLER-GGMRVSEIARELDL---SARFVRDRLKVLLKRGFVRREI 68 (109)
T ss_dssp HHHHHHHHHHH-CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEEe
Confidence 34455555442 68999999999999 6899999999999999998764
No 397
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=92.21 E-value=0.066 Score=42.29 Aligned_cols=62 Identities=18% Similarity=0.188 Sum_probs=45.5
Q ss_pred cchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccc---eEeccccccccc
Q 018205 40 IPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEE---AYALTLTSKLFL 109 (359)
Q Consensus 40 lf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~---~~~~t~~~~~l~ 109 (359)
++..|...+++.+..+||+.+++ +...+.++++.|+..|++++... +. +. ...+|+.++.+.
T Consensus 36 vL~~L~~~~~~~~~~eLa~~l~~---~~~tvs~~v~~Le~~GlV~R~~~---~~--DrR~~~l~LT~~G~~~~ 100 (151)
T 4aik_A 36 TLYNINRLPPEQSQIQLAKAIGI---EQPSLVRTLDQLEEKGLITRHTS---AN--DRRAKRIKLTEQSSPII 100 (151)
T ss_dssp HHHHHHHSCTTSCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEEC---SS--CTTCEEEEECGGGHHHH
T ss_pred HHHHHHHcCCCCcHHHHHHHHCc---CHHHHHHHHHHHHhCCCeEeecC---CC--CCcchhhhcCHHHHHHH
Confidence 44455443456788999999999 78999999999999999997641 11 22 377787776544
No 398
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=92.16 E-value=0.052 Score=42.18 Aligned_cols=64 Identities=14% Similarity=0.178 Sum_probs=45.7
Q ss_pred cCcchhc-ccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccC-ccceEecccccccc
Q 018205 38 LDIPEVI-HKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQ-EEEAYALTLTSKLF 108 (359)
Q Consensus 38 lglf~~L-~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~-~~~~~~~t~~~~~l 108 (359)
+.++..| .. +++.|..+||+.+++ +...+.+.++.|+..|+++..... .+ -.-.+.+|+.+..+
T Consensus 40 ~~iL~~l~~~-~~~~t~~~la~~l~~---s~~~vs~~l~~L~~~glv~r~~~~---~d~R~~~~~lT~~G~~~ 105 (146)
T 2fbh_A 40 WLVLLHLARH-RDSPTQRELAQSVGV---EGPTLARLLDGLESQGLVRRLAVA---EDRRAKHIVLTPKADVL 105 (146)
T ss_dssp HHHHHHHHHC-SSCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEECCB---TTBCSCEEEECTTHHHH
T ss_pred HHHHHHHHHc-CCCCCHHHHHHHhCC---ChhhHHHHHHHHHHCCCeeecCCC---cccCeeeeEECHhHHHH
Confidence 4456666 43 379999999999999 689999999999999999886410 01 01136667665543
No 399
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=92.03 E-value=0.074 Score=38.27 Aligned_cols=57 Identities=14% Similarity=0.168 Sum_probs=45.5
Q ss_pred cchhcccCCCCCCHHHHHH-hcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccccccc
Q 018205 40 IPEVIHKHGRPITLPQLVS-ALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFL 109 (359)
Q Consensus 40 lf~~L~~~~~~~t~~ela~-~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
|+-.|... ++.|+.+||+ ..++ +...+.|=++.|...|+++..+ +| +.+|+.++.+.
T Consensus 21 iL~~L~~~-~~~t~~~Lae~~l~~---drstvsrnl~~L~r~GlVe~~~--------~D-l~LT~~G~~~l 78 (95)
T 1bja_A 21 ILITIAKK-DFITAAEVREVHPDL---GNAVVNSNIGVLIKKGLVEKSG--------DG-LIITGEAQDII 78 (95)
T ss_dssp HHHHHHHS-TTBCHHHHHHTCTTS---CHHHHHHHHHHHHTTTSEEEET--------TE-EEECHHHHHHH
T ss_pred HHHHHHHC-CCCCHHHHHHHHhcc---cHHHHHHHHHHHHHCCCeecCC--------CC-eeeCHhHHHHH
Confidence 34445554 5999999999 9999 7889999999999999999332 34 88898877554
No 400
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=92.02 E-value=0.051 Score=42.15 Aligned_cols=66 Identities=14% Similarity=0.173 Sum_probs=47.3
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc-cceEeccccccccc
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE-EEAYALTLTSKLFL 109 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~-~~~~~~t~~~~~l~ 109 (359)
++.++..|... ++.|..+||+.+++ +...+.++++.|+..|++++.... .|. .-.+.+|+.++.+.
T Consensus 38 q~~vL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~L~~~Glv~r~~~~---~D~R~~~~~LT~~G~~~~ 104 (140)
T 3hsr_A 38 GYIVLMAIEND-EKLNIKKLGERVFL---DSGTLTPLLKKLEKKDYVVRTREE---KDERNLQISLTEQGKAIK 104 (140)
T ss_dssp HHHHHHHSCTT-CEEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC----------CEEEECHHHHHTH
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCC---ChhhHHHHHHHHHHCCCeEecCCC---CCcceeeeeEChHHHHHH
Confidence 34455666553 79999999999999 689999999999999999987410 010 12477777766444
No 401
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=91.98 E-value=0.038 Score=43.25 Aligned_cols=66 Identities=8% Similarity=0.111 Sum_probs=46.8
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc-cceEeccccccccc
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE-EEAYALTLTSKLFL 109 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~-~~~~~~t~~~~~l~ 109 (359)
++.++..|... ++.|..+||+.+++ +...+.+.++.|+..|++...... .+. .-.+.+|+.++.+.
T Consensus 44 ~~~iL~~l~~~-~~~t~~ela~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~---~d~R~~~~~lT~~G~~~~ 110 (150)
T 2rdp_A 44 QFVALQWLLEE-GDLTVGELSNKMYL---ACSTTTDLVDRMERNGLVARVRDE---HDRRVVRIRLLEKGERII 110 (150)
T ss_dssp HHHHHHHHHHH-CSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECC---C---CEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCC---CchhHHHHHHHHHHCCCeeecCCC---CCcceeEeEECHhHHHHH
Confidence 34455666553 68999999999999 689999999999999999876310 010 11366777665443
No 402
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=91.95 E-value=0.038 Score=43.97 Aligned_cols=66 Identities=9% Similarity=0.145 Sum_probs=45.6
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccC-ccceEeccccccccc
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQ-EEEAYALTLTSKLFL 109 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~-~~~~~~~t~~~~~l~ 109 (359)
++.|+..|... ++.|..+||+.+++ +...+.+.++.|+..|+|++.... .+ -...+.+|+.++.+.
T Consensus 51 ~~~iL~~l~~~-~~~t~~ela~~l~i---s~~tvs~~l~~Le~~glv~r~~~~---~d~R~~~~~lT~~G~~~~ 117 (162)
T 2fa5_A 51 EWRVITILALY-PGSSASEVSDRTAM---DKVAVSRAVARLLERGFIRRETHG---DDRRRSMLALSPAGRQVY 117 (162)
T ss_dssp HHHHHHHHHHS-TTCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEC------------CCCEECHHHHHHH
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeeecCC---CCCCeeEEEECHHHHHHH
Confidence 44566667653 69999999999999 689999999999999999876310 00 012366676665433
No 403
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=91.92 E-value=0.036 Score=44.11 Aligned_cols=67 Identities=9% Similarity=0.088 Sum_probs=48.0
Q ss_pred HhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccC-ccceEeccccccccc
Q 018205 36 VELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQ-EEEAYALTLTSKLFL 109 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~-~~~~~~~t~~~~~l~ 109 (359)
.++.|+..|... ++.|..+||+.+++ +...+.+.++.|+..|+++..... .+ -.-.+.+|+.++.+.
T Consensus 53 ~~~~iL~~l~~~-~~~t~~ela~~l~i---s~~tvs~~l~~Le~~Gli~r~~~~---~d~R~~~~~lT~~G~~~~ 120 (162)
T 3cjn_A 53 AKMRALAILSAK-DGLPIGTLGIFAVV---EQSTLSRALDGLQADGLVRREVDS---DDQRSSRVYLTPAGRAVY 120 (162)
T ss_dssp HHHHHHHHHHHS-CSEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEC-----CCSSEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHCC---ChhHHHHHHHHHHHCCCEEecCCC---CCCCeeEEEECHHHHHHH
Confidence 345566677653 68999999999999 689999999999999999876310 00 012366777665443
No 404
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=91.87 E-value=0.06 Score=41.77 Aligned_cols=65 Identities=15% Similarity=0.208 Sum_probs=47.2
Q ss_pred HhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccc---eEeccccccccc
Q 018205 36 VELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEE---AYALTLTSKLFL 109 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~---~~~~t~~~~~l~ 109 (359)
.++.++..|... ++.|..+||+.+++ +...+.+.++.|+..|+++..... .+. .+.+|+.++.+.
T Consensus 34 ~~~~iL~~l~~~-~~~~~~~la~~l~~---s~~tvs~~l~~L~~~glv~r~~~~-----~d~r~~~~~lT~~G~~~~ 101 (145)
T 2a61_A 34 AQFDILQKIYFE-GPKRPGELSVLLGV---AKSTVTGLVKRLEADGYLTRTPDP-----ADRRAYFLVITRKGEEVI 101 (145)
T ss_dssp HHHHHHHHHHHH-CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEET-----TEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCC---CchhHHHHHHHHHHCCCeeecCCC-----CCCceEEEEECHHHHHHH
Confidence 345566666553 68999999999999 689999999999999999986310 012 366676665443
No 405
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=91.77 E-value=0.063 Score=41.57 Aligned_cols=66 Identities=11% Similarity=0.230 Sum_probs=47.1
Q ss_pred HhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCcc-ceEecccccccc
Q 018205 36 VELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEE-EAYALTLTSKLF 108 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~-~~~~~t~~~~~l 108 (359)
.++.|+..|... ++.|..+||+.+++ +...+.+.++.|+..|+++.... +.+.. -.+.+|+.+..+
T Consensus 38 ~~~~iL~~l~~~-~~~~~~ela~~l~~---~~~tvs~~l~~L~~~gli~r~~~---~~d~R~~~~~lT~~G~~~ 104 (142)
T 2bv6_A 38 PQFLVLTILWDE-SPVNVKKVVTELAL---DTGTVSPLLKRMEQVDLIKRERS---EVDQREVFIHLTDKSETI 104 (142)
T ss_dssp HHHHHHHHHHHS-SEEEHHHHHHHTTC---CTTTHHHHHHHHHHTTSEEEEEC---SSSTTCEEEEECHHHHHH
T ss_pred HHHHHHHHHHHc-CCcCHHHHHHHHCC---ChhhHHHHHHHHHHCCCEEeecC---CCCcceEEEEEChHHHHH
Confidence 345566666653 68999999999999 67899999999999999988641 00101 136667666543
No 406
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=91.77 E-value=0.04 Score=42.79 Aligned_cols=65 Identities=9% Similarity=0.061 Sum_probs=46.4
Q ss_pred cCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc-cceEeccccccccc
Q 018205 38 LDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE-EEAYALTLTSKLFL 109 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~-~~~~~~t~~~~~l~ 109 (359)
+.++..|... ++.|..+||+.+++ +...+.+.++.|+..|++...... .+. .-.+.+|+.++.+.
T Consensus 32 ~~iL~~l~~~-~~~t~~~la~~l~~---s~~~vs~~l~~Le~~gli~r~~~~---~d~R~~~~~lT~~G~~~~ 97 (144)
T 1lj9_A 32 YLYLVRVCEN-PGIIQEKIAELIKV---DRTTAARAIKRLEEQGFIYRQEDA---SNKKIKRIYATEKGKNVY 97 (144)
T ss_dssp HHHHHHHHHS-TTEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECS---SCTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHC-cCcCHHHHHHHHCC---CHhHHHHHHHHHHHCCCEEeecCC---CCCceeeeEEChhHHHHH
Confidence 3455556553 68999999999999 689999999999999999986410 010 11267777665443
No 407
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=91.69 E-value=0.075 Score=41.74 Aligned_cols=66 Identities=15% Similarity=0.200 Sum_probs=47.1
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccC-ccceEeccccccccc
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQ-EEEAYALTLTSKLFL 109 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~-~~~~~~~t~~~~~l~ 109 (359)
++.|+..|... ++.|..+||+.+++ +...+.+.++.|+..|+++..... .+ -.-.+.+|+.++.+.
T Consensus 49 ~~~iL~~l~~~-~~~t~~ela~~l~~---s~~tvs~~l~~Le~~glv~r~~~~---~d~R~~~~~lT~~G~~~~ 115 (153)
T 2pex_A 49 QYLVMLVLWET-DERSVSEIGERLYL---DSATLTPLLKRLQAAGLVTRTRAA---SDERQVIIALTETGRALR 115 (153)
T ss_dssp HHHHHHHHHHS-CSEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC----------CEEEECHHHHHGG
T ss_pred HHHHHHHHHhC-CCcCHHHHHHHhCC---CcccHHHHHHHHHHCCCEeecCCc---ccCCeeEeeECHHHHHHH
Confidence 34456666653 68999999999999 689999999999999999986410 00 011367777666444
No 408
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=91.63 E-value=0.039 Score=43.83 Aligned_cols=64 Identities=16% Similarity=0.127 Sum_probs=45.6
Q ss_pred CcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc-cceEeccccccccc
Q 018205 39 DIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE-EEAYALTLTSKLFL 109 (359)
Q Consensus 39 glf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~-~~~~~~t~~~~~l~ 109 (359)
.++..|... ++.|..+||+.+++ +...+.++++.|+..|++++.... .|. .-.+.+|+.++.+.
T Consensus 54 ~vL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~---~DrR~~~l~LT~~G~~~~ 118 (159)
T 3s2w_A 54 PFLMRLYRE-DGINQESLSDYLKI---DKGTTARAIQKLVDEGYVFRQRDE---KDRRSYRVFLTEKGKKLE 118 (159)
T ss_dssp HHHHHHHHS-CSEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECC------CCEEEEECHHHHHHH
T ss_pred HHHHHHHHC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEecCC---CCCCeeEEEECHHHHHHH
Confidence 345555543 68999999999999 689999999999999999987410 110 11366777665443
No 409
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=91.52 E-value=0.094 Score=40.70 Aligned_cols=47 Identities=19% Similarity=0.342 Sum_probs=38.0
Q ss_pred HhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 36 VELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
.++.|+..|... + .|..+||+.+++ +...+.+.++.|+..|++++..
T Consensus 39 ~~~~iL~~l~~~-~-~t~~eLa~~l~~---s~~tvs~~l~~L~~~Glv~r~~ 85 (146)
T 3tgn_A 39 TQEHILMLLSEE-S-LTNSELARRLNV---SQAAVTKAIKSLVKEGMLETSK 85 (146)
T ss_dssp HHHHHHHHHTTC-C-CCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHHHHHhC-C-CCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEecc
Confidence 345566666662 4 999999999999 6899999999999999998764
No 410
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=91.45 E-value=0.13 Score=42.55 Aligned_cols=51 Identities=14% Similarity=0.263 Sum_probs=43.1
Q ss_pred HHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeee
Q 018205 31 SLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTA 86 (359)
Q Consensus 31 ~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~ 86 (359)
++....+..|+..|.+ ++.|..|||+.+|+ .+..+.+.++.|...|++...
T Consensus 16 ~l~d~~~~~IL~~L~~--~~~s~~eLA~~lgl---S~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 16 VMLEDTRRKILKLLRN--KEMTISQLSEILGK---TPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHSHHHHHHHHHHTT--CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE
T ss_pred HhCCHHHHHHHHHHHc--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEE
Confidence 3344566678888874 79999999999999 679999999999999999876
No 411
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=91.39 E-value=0.051 Score=42.87 Aligned_cols=67 Identities=13% Similarity=0.097 Sum_probs=47.8
Q ss_pred HhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc-cceEeccccccccc
Q 018205 36 VELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE-EEAYALTLTSKLFL 109 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~-~~~~~~t~~~~~l~ 109 (359)
.++.|+..|... ++.|..+||+.+++ +...+.+.++.|+..|+++..... .+. .-.+.+|+.++.+.
T Consensus 45 ~~~~iL~~l~~~-~~~t~~ela~~l~i---s~~tvs~~l~~Le~~Gli~r~~~~---~d~R~~~~~lT~~G~~~~ 112 (154)
T 2eth_A 45 TELYAFLYVALF-GPKKMKEIAEFLST---TKSNVTNVVDSLEKRGLVVREMDP---VDRRTYRVVLTEKGKEIF 112 (154)
T ss_dssp HHHHHHHHHHHH-CCBCHHHHHHHTTS---CHHHHHHHHHHHHHTTSEEEEECT---TTSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeeCCC---CCcceeEEEECHHHHHHH
Confidence 345566666653 58999999999999 689999999999999999876310 010 11366777665443
No 412
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=91.20 E-value=0.21 Score=36.36 Aligned_cols=53 Identities=11% Similarity=0.245 Sum_probs=40.6
Q ss_pred HHHHHHhcCcch-hcccCCCCC-CHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 31 SLKCAVELDIPE-VIHKHGRPI-TLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 31 ~l~~a~~lglf~-~L~~~~~~~-t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
.+...++..|.+ .+.. |..+ |..+||+.+|+ ....+++.|+.|...|+++...
T Consensus 15 ~l~~~i~~~I~~~~l~~-g~~lps~~eLa~~~~v---Sr~tvr~al~~L~~~Gli~~~~ 69 (102)
T 1v4r_A 15 DVATHFRTLIKSGELAP-GDTLPSVADIRAQFGV---AAKTVSRALAVLKSEGLVSSRG 69 (102)
T ss_dssp HHHHHHHHHTTTTSCCT-TSBCCCHHHHHHHSSS---CTTHHHHHTTTTTTSSCCEEET
T ss_pred HHHHHHHHHHHhCCCCC-cCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeC
Confidence 344445555665 3443 3455 99999999999 6789999999999999998775
No 413
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=91.19 E-value=0.083 Score=41.08 Aligned_cols=67 Identities=13% Similarity=0.245 Sum_probs=48.5
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc-cceEecccccccccc
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE-EEAYALTLTSKLFLK 110 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~-~~~~~~t~~~~~l~~ 110 (359)
++.++..|... ++.|..+||+.+++ +...+.+.++.|+..|+++..... .+. .-.+.+|+.++.+..
T Consensus 42 ~~~iL~~l~~~-~~~~~~~la~~l~~---~~~tvs~~l~~L~~~glv~r~~~~---~d~R~~~~~LT~~G~~~~~ 109 (147)
T 1z91_A 42 QYLALLLLWEH-ETLTVKKMGEQLYL---DSGTLTPMLKRMEQQGLITRKRSE---EDERSVLISLTEDGALLKE 109 (147)
T ss_dssp HHHHHHHHHHH-SEEEHHHHHHTTTC---CHHHHHHHHHHHHHHTSEECCBCS---SCTTSBEEEECHHHHSGGG
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHCC---CcCcHHHHHHHHHHCCCEEeccCC---CCCCeeEEEECHhHHHHHH
Confidence 44556666553 58999999999999 689999999999999999876410 010 123777887765543
No 414
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=91.13 E-value=0.33 Score=40.43 Aligned_cols=65 Identities=9% Similarity=0.105 Sum_probs=46.6
Q ss_pred cCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc-cceEeccccccccc
Q 018205 38 LDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE-EEAYALTLTSKLFL 109 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~-~~~~~~t~~~~~l~ 109 (359)
+.|+..|... +++|..+||+.+++ +...+.++++.|+..|+|.+.... .|. .-.+.+|+.++.+.
T Consensus 51 ~~iL~~L~~~-~~~t~~eLa~~l~i---~~stvs~~l~~Le~~GlV~r~~~~---~DrR~~~l~LT~~G~~~~ 116 (207)
T 2fxa_A 51 HHILWIAYQL-NGASISEIAKFGVM---HVSTAFNFSKKLEERGYLRFSKRL---NDKRNTYVQLTEEGTEVF 116 (207)
T ss_dssp HHHHHHHHHH-TSEEHHHHHHHTTC---CHHHHHHHHHHHHHHTSEEEECC---------CEEEECHHHHHHH
T ss_pred HHHHHHHHHC-CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEecCC---CCCceEEEEECHHHHHHH
Confidence 4455566543 68999999999999 689999999999999999987410 010 01467777776443
No 415
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=91.12 E-value=0.34 Score=30.69 Aligned_cols=44 Identities=11% Similarity=0.164 Sum_probs=38.8
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccc
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLT 104 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~ 104 (359)
.++|+.|+|...|+ +.+..+.-|..|...|-+.+.+ .+|++.|-
T Consensus 17 QGMTaGEVAA~f~w---~Le~ar~aLeqLf~~G~LRKRs---------SRYrlkph 60 (68)
T 3i71_A 17 QGMTAGEVAAHFGW---PLEKARNALEQLFSAGTLRKRS---------SRYRLKPH 60 (68)
T ss_dssp TCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC---------CEEEECC-
T ss_pred ccccHHHHHHHhCC---cHHHHHHHHHHHHhcchhhhhc---------cccccCcc
Confidence 58999999999999 6788889999999999999884 89988763
No 416
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=91.06 E-value=0.15 Score=40.38 Aligned_cols=66 Identities=17% Similarity=0.167 Sum_probs=47.6
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc-cceEeccccccccc
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE-EEAYALTLTSKLFL 109 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~-~~~~~~t~~~~~l~ 109 (359)
++.++..|... ++.|..+||+.+++ +...+.++++.|+..|++++... +.|. .-.+.+|+.++.+.
T Consensus 55 q~~vL~~l~~~-~~~t~~eLa~~l~~---~~~~vs~~l~~Le~~Glv~r~~~---~~DrR~~~~~LT~~G~~~~ 121 (161)
T 3e6m_A 55 KLRLLSSLSAY-GELTVGQLATLGVM---EQSTTSRTVDQLVDEGLAARSIS---DADQRKRTVVLTRKGKKKL 121 (161)
T ss_dssp HHHHHHHHHHH-SEEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEECC------CCCSCEEEECHHHHHHH
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeeCC---cccCCeeEeeECHHHHHHH
Confidence 34466666653 68999999999999 68999999999999999998641 0110 12377777766444
No 417
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=91.02 E-value=0.12 Score=39.83 Aligned_cols=51 Identities=12% Similarity=0.221 Sum_probs=42.2
Q ss_pred HHHhcCcchhcccCCCCCCHHHHHHhc-----CCCCCCcccHHHHHHHHHccCceeeec
Q 018205 34 CAVELDIPEVIHKHGRPITLPQLVSAL-----EINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 34 ~a~~lglf~~L~~~~~~~t~~ela~~~-----~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
+-.+.-|++.|...+++.|++||.+.+ ++ +...+.|.|+.|++.|++.+..
T Consensus 10 T~qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~~i---s~~TVYR~L~~L~e~Glv~~~~ 65 (131)
T 2o03_A 10 TRQRAAISTLLETLDDFRSAQELHDELRRRGENI---GLTTVYRTLQSMASSGLVDTLH 65 (131)
T ss_dssp HHHHHHHHHHHHHCCSCEEHHHHHHHHHHTTCCC---CHHHHHHHHHHHHTTTSEEEEE
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC---CHhhHHHHHHHHHHCCCEEEEE
Confidence 445666777776544799999999999 67 6789999999999999998764
No 418
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=90.84 E-value=0.051 Score=44.28 Aligned_cols=67 Identities=12% Similarity=0.200 Sum_probs=45.8
Q ss_pred hcCcchhcccCCCC--CCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc-cceEeccccccccc
Q 018205 37 ELDIPEVIHKHGRP--ITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE-EEAYALTLTSKLFL 109 (359)
Q Consensus 37 ~lglf~~L~~~~~~--~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~-~~~~~~t~~~~~l~ 109 (359)
++.|+..|...+++ +|..+||+.+++ +...+.+.++.|+..|++++.... .+. .-.+.+|+.++.+.
T Consensus 71 ~~~iL~~L~~~~~~~~~t~~eLa~~l~i---s~~tvs~~l~~Le~~GlV~r~~~~---~DrR~~~~~LT~~G~~~~ 140 (181)
T 2fbk_A 71 GWDLLLTLYRSAPPEGLRPTELSALAAI---SGPSTSNRIVRLLEKGLIERREDE---RDRRSASIRLTPQGRALV 140 (181)
T ss_dssp HHHHHHHHHHHCCSSCBCHHHHHHHCSC---CSGGGSSHHHHHHHHTSEECCC----------CCBEECHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHCC---CHHHHHHHHHHHHHCcCEEecCCC---CCCCeeEEEECHHHHHHH
Confidence 34466666653333 999999999999 678999999999999999876310 000 11366776665443
No 419
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=90.78 E-value=0.15 Score=37.17 Aligned_cols=36 Identities=17% Similarity=0.366 Sum_probs=33.7
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
++.|..|||+.+|+ +...+.+.|+.|...|++....
T Consensus 35 ~~~t~~ela~~l~i---s~~tv~~~l~~L~~~g~v~~~~ 70 (109)
T 2d1h_A 35 KPITSEELADIFKL---SKTTVENSLKKLIELGLVVRTK 70 (109)
T ss_dssp SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEeec
Confidence 68999999999999 6899999999999999999874
No 420
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=90.75 E-value=0.26 Score=36.99 Aligned_cols=70 Identities=21% Similarity=0.323 Sum_probs=48.8
Q ss_pred HHHhcCcchhcccCCCCCCHHHHHHhcC--------CCCCCc-ccHHHHHHHHHccCceeeecccccccCccceEecccc
Q 018205 34 CAVELDIPEVIHKHGRPITLPQLVSALE--------INPTKA-DGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLT 104 (359)
Q Consensus 34 ~a~~lglf~~L~~~~~~~t~~ela~~~~--------~~~~~~-~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~ 104 (359)
...++-|+..|.+ +|.+.-+|++.+. + +. ..+.+.|+.|+..|+|+...... +....-.|++|+.
T Consensus 12 ~~~~~~IL~~L~~--~~~~gyel~~~l~~~g~~~~~i---s~~~tly~~L~~Le~~GlI~~~~~~~-~~~~r~~Y~LT~~ 85 (118)
T 2esh_A 12 WWLASTILLLVAE--KPSHGYELAERLAEFGIEIPGI---GHMGNIYRVLADLEESGFLSTEWDTT-VSPPRKIYRITPQ 85 (118)
T ss_dssp HHHHHHHHHHHHH--SCBCHHHHHHHHHTTCCSSTTC---CCCCCHHHHHHHHHHTTSEEEEEECS-SSSCEEEEEECHH
T ss_pred chHHHHHHHHHHc--CCCCHHHHHHHHHHhCCcccCC---CCcchHHHHHHHHHHCCCeEEEeecC-CCCCceEEEEChH
Confidence 3444555666665 6999999999883 5 67 88999999999999998764210 0111235899988
Q ss_pred ccccc
Q 018205 105 SKLFL 109 (359)
Q Consensus 105 ~~~l~ 109 (359)
++...
T Consensus 86 G~~~l 90 (118)
T 2esh_A 86 GKLYL 90 (118)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77543
No 421
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=90.75 E-value=0.13 Score=40.17 Aligned_cols=45 Identities=18% Similarity=0.293 Sum_probs=38.5
Q ss_pred cCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeee
Q 018205 38 LDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTA 86 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~ 86 (359)
..|+..|.+ +++.|..|||+++|+ .+..+.+.++.|...|++...
T Consensus 8 ~~il~~L~~-~~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~ 52 (144)
T 2cfx_A 8 LNIIEELKK-DSRLSMRELGRKIKL---SPPSVTERVRQLESFGIIKQY 52 (144)
T ss_dssp HHHHHHHHH-CSCCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEE
Confidence 356667765 378999999999999 689999999999999999865
No 422
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=90.66 E-value=0.11 Score=40.82 Aligned_cols=46 Identities=15% Similarity=0.248 Sum_probs=39.4
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeee
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTA 86 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~ 86 (359)
+..|+..|.+ +++.|..|||+.+|+ ++..+.+.++.|...|++...
T Consensus 5 ~~~il~~L~~-~~~~~~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~ 50 (150)
T 2pn6_A 5 DLRILKILQY-NAKYSLDEIAREIRI---PKATLSYRIKKLEKDGVIKGY 50 (150)
T ss_dssp HHHHHHHHTT-CTTSCHHHHHHHHTS---CHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEEE
Confidence 4556777765 368999999999999 689999999999999999864
No 423
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=90.61 E-value=0.075 Score=37.06 Aligned_cols=49 Identities=16% Similarity=0.285 Sum_probs=37.0
Q ss_pred cCcchhcccCCCCCCHHHHHHhcCCCC-CCcccHHHHHHHHHccCceeeec
Q 018205 38 LDIPEVIHKHGRPITLPQLVSALEINP-TKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~ela~~~~~~~-~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
..|+..|.. .++.|+.||++.++..+ -+...+.++|+.|+..|++.+..
T Consensus 12 ~~vL~~L~~-~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~~ 61 (82)
T 1p6r_A 12 LEVMKVIWK-HSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHK 61 (82)
T ss_dssp HHHHHHHHT-SSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHc-CCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEEe
Confidence 334455544 26899999999997310 05688999999999999999875
No 424
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=90.48 E-value=0.13 Score=42.56 Aligned_cols=37 Identities=19% Similarity=0.401 Sum_probs=32.5
Q ss_pred CCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 48 GRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 48 ~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
|.|.|..|||+.+|++ ...+.+.|+.|+..|++....
T Consensus 22 g~~~s~~eia~~lgl~---~~tv~~~l~~Le~~G~i~~~~ 58 (196)
T 3k2z_A 22 GYPPSVREIARRFRIT---PRGALLHLIALEKKGYIERKN 58 (196)
T ss_dssp SSCCCHHHHHHHHTSC---HHHHHHHHHHHHHTTSEECC-
T ss_pred CCCCCHHHHHHHcCCC---cHHHHHHHHHHHHCCCEEecC
Confidence 4589999999999994 568999999999999998774
No 425
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=90.45 E-value=0.23 Score=38.66 Aligned_cols=47 Identities=11% Similarity=0.118 Sum_probs=32.7
Q ss_pred cCcchhcccCC-CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 38 LDIPEVIHKHG-RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 38 lglf~~L~~~~-~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
..++..|...+ ++.|..+||+.+++ +...+.+.++.|+..|++++..
T Consensus 44 ~~vL~~l~~~~~~~~t~~eLa~~l~~---~~~~vs~~l~~L~~~Glv~r~~ 91 (148)
T 3jw4_A 44 GRMIGYIYENQESGIIQKDLAQFFGR---RGASITSMLQGLEKKGYIERRI 91 (148)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHHC---------CHHHHHHHHHHTTSBCCC-
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHCC---ChhHHHHHHHHHHHCCCEEeeC
Confidence 34555555432 68999999999999 6789999999999999998764
No 426
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=90.44 E-value=0.069 Score=41.22 Aligned_cols=48 Identities=10% Similarity=0.126 Sum_probs=39.8
Q ss_pred HhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 36 VELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
.++.++..|... ++.|..+||+.+++ +...+.+.++.|+..|+++...
T Consensus 37 ~~~~iL~~l~~~-~~~t~~ela~~l~~---s~~~vs~~l~~Le~~glv~r~~ 84 (142)
T 2fbi_A 37 QQWRVIRILRQQ-GEMESYQLANQACI---LRPSMTGVLARLERDGIVRRWK 84 (142)
T ss_dssp HHHHHHHHHHHH-CSEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCC---CHhHHHHHHHHHHHCCCEEeec
Confidence 345566666553 68999999999999 6899999999999999998763
No 427
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=90.41 E-value=0.29 Score=33.33 Aligned_cols=43 Identities=12% Similarity=0.036 Sum_probs=36.0
Q ss_pred chhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 41 PEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 41 f~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
++.|.+ |+..|+.+||+++|+ ...-+.|.|.-|...|++....
T Consensus 21 i~~L~~-~~~~Ta~~IAkkLg~---sK~~vNr~LY~L~kkG~V~~~~ 63 (75)
T 1sfu_A 21 VLSLNT-NDYTTAISLSNRLKI---NKKKINQQLYKLQKEDTVKMVP 63 (75)
T ss_dssp HHTSCT-TCEECHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHhCCC-CcchHHHHHHHHHCC---CHHHHHHHHHHHHHCCCEecCC
Confidence 346665 245999999999999 6788999999999999998774
No 428
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=90.40 E-value=0.14 Score=40.22 Aligned_cols=46 Identities=13% Similarity=0.128 Sum_probs=38.6
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeee
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTA 86 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~ 86 (359)
+..|+..|.. +++.|..|||+.+|+ ++..+.+.++.|...|++...
T Consensus 9 ~~~iL~~L~~-~~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~ 54 (150)
T 2w25_A 9 DRILVRELAA-DGRATLSELATRAGL---SVSAVQSRVRRLESRGVVQGY 54 (150)
T ss_dssp HHHHHHHHHH-CTTCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEE
Confidence 3456666665 368999999999999 689999999999999999765
No 429
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=90.27 E-value=0.24 Score=33.97 Aligned_cols=37 Identities=11% Similarity=0.292 Sum_probs=33.5
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
+.++++++|+.+++. ..+++..++++|++.|++++..
T Consensus 29 ~~i~l~~aa~~L~v~--~kRRiYDI~NVLe~igli~K~~ 65 (76)
T 1cf7_A 29 GVLDLKLAADTLAVR--QKRRIYDITNVLEGIGLIEKKS 65 (76)
T ss_dssp TEEEHHHHHHHTTTC--CTHHHHHHHHHHHHHTSEEEEE
T ss_pred CcCcHHHHHHHhCCc--cceehhhHHHHHhHhcceeecC
Confidence 678999999999993 3799999999999999999875
No 430
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=90.23 E-value=1.3 Score=34.71 Aligned_cols=70 Identities=19% Similarity=0.200 Sum_probs=47.7
Q ss_pred HhcCcchhcccC-CCCCCHHHHHHhcC-CCCCCcccHHHHHHHHHccCceeeecccccccCccc----eEeccccccccc
Q 018205 36 VELDIPEVIHKH-GRPITLPQLVSALE-INPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEE----AYALTLTSKLFL 109 (359)
Q Consensus 36 ~~lglf~~L~~~-~~~~t~~ela~~~~-~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~----~~~~t~~~~~l~ 109 (359)
.++.|+..|..+ .+..|+++|++.++ + ....+++.|+.|+..|++++..... .....| .|++|+.++...
T Consensus 30 tR~~IL~~Ll~~p~~~~ta~eL~~~l~~l---S~aTVyrhL~~L~eaGLV~~~~~~~-~~~~rGrP~k~Y~LT~~Gr~~l 105 (151)
T 3u1d_A 30 TRLDVLHQILAQPDGVLSVEELLYRNPDE---TEANLRYHVDELVDRGIVEKIPVPR-AKSVDDPPTTFYAVTGEGIALL 105 (151)
T ss_dssp HHHHHHHHHHHSTTSCBCHHHHHHHCTTS---CHHHHHHHHHHHHHTTSEEEEECCC-CTTSSSCCCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHhcCCC---CHHHHHHHHHHHHHCCCeEEeecCc-CcccCCCCceEEEECHHHHHHH
Confidence 344444544332 14689999999998 8 6899999999999999998653210 000112 699998887544
No 431
>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52
Probab=90.17 E-value=0.29 Score=44.98 Aligned_cols=38 Identities=16% Similarity=0.342 Sum_probs=29.0
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHC-------CCCeEEEeeccccc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAF-------PGIKCTVLDLPHVV 230 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~-------p~~~~~~~D~~~~~ 230 (359)
+...+|+|+|+|+|.++..+++.. ..++++.+|+|..+
T Consensus 79 p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~L 123 (387)
T 1zkd_A 79 PQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVL 123 (387)
T ss_dssp CSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHH
T ss_pred CCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHH
Confidence 345689999999999988877642 34589999997633
No 432
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=90.04 E-value=0.11 Score=37.78 Aligned_cols=50 Identities=18% Similarity=0.163 Sum_probs=38.7
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCC-CCcccHHHHHHHHHccCceeeec
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINP-TKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~-~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
+..|...|.+. +++|+.||++.++..+ -....+.++|+.|+..|+|.+..
T Consensus 37 e~~VL~~L~~~-~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~~ 87 (99)
T 2k4b_A 37 ELIVMRVIWSL-GEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTEK 87 (99)
T ss_dssp CSHHHHHHHHH-SCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEEE
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEEe
Confidence 34556666543 6999999999998520 14578999999999999999875
No 433
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=89.97 E-value=0.16 Score=40.52 Aligned_cols=45 Identities=13% Similarity=0.267 Sum_probs=38.2
Q ss_pred cCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeee
Q 018205 38 LDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTA 86 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~ 86 (359)
..|+..|.+ +++.|..|||+++|+ .+..+.+.++.|...|++...
T Consensus 13 ~~il~~L~~-~~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~ 57 (162)
T 2p5v_A 13 IKILQVLQE-NGRLTNVELSERVAL---SPSPCLRRLKQLEDAGIVRQY 57 (162)
T ss_dssp HHHHHHHHH-CTTCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEeee
Confidence 346666665 368999999999999 679999999999999999865
No 434
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=89.53 E-value=0.089 Score=43.20 Aligned_cols=69 Identities=12% Similarity=0.089 Sum_probs=49.8
Q ss_pred HhcCcchhcccC-CCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCcc-ceEecccccccccc
Q 018205 36 VELDIPEVIHKH-GRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEE-EAYALTLTSKLFLK 110 (359)
Q Consensus 36 ~~lglf~~L~~~-~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~-~~~~~t~~~~~l~~ 110 (359)
.++.++..|... ++++|..+||+.+++ +...+.++++.|+..|+|++.... .+.. -.+.+|+.++.+..
T Consensus 42 ~q~~vL~~L~~~~~~~~t~~eLa~~l~i---s~~tvs~~l~~Le~~GlV~r~~~~---~DrR~~~l~LT~~G~~~~~ 112 (189)
T 3nqo_A 42 RQYMTILSILHLPEEETTLNNIARKMGT---SKQNINRLVANLEKNGYVDVIPSP---HDKRAINVKVTDLGKKVMV 112 (189)
T ss_dssp HHHHHHHHHHHSCGGGCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEECS---SCSSCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeccCC---CCCCeeEEEECHHHHHHHH
Confidence 445566666531 268999999999999 689999999999999999986411 1101 24778888775543
No 435
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=89.40 E-value=0.26 Score=42.70 Aligned_cols=39 Identities=18% Similarity=0.153 Sum_probs=32.0
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccC
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKV 233 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a 233 (359)
.+...|||..||+|.++....+. +.+++++|+.+ .++.+
T Consensus 211 ~~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~ 250 (260)
T 1g60_A 211 NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQA 250 (260)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHH
Confidence 45789999999999999988776 67999999954 55544
No 436
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=89.37 E-value=0.17 Score=39.84 Aligned_cols=46 Identities=11% Similarity=0.224 Sum_probs=38.8
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeee
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTA 86 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~ 86 (359)
+..|+..|.+ +++.|..|||+++|+ ++..+.+.++.|...|++...
T Consensus 10 d~~il~~L~~-~~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~ 55 (152)
T 2cg4_A 10 DRGILEALMG-NARTAYAELAKQFGV---SPETIHVRVEKMKQAGIITGA 55 (152)
T ss_dssp HHHHHHHHHH-CTTSCHHHHHHHHTS---CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHcCCcceE
Confidence 3346666765 378999999999999 689999999999999999864
No 437
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=89.34 E-value=0.19 Score=39.34 Aligned_cols=51 Identities=14% Similarity=0.199 Sum_probs=42.0
Q ss_pred HHHhcCcchhcccCCCCCCHHHHHHhc-----CCCCCCcccHHHHHHHHHccCceeeec
Q 018205 34 CAVELDIPEVIHKHGRPITLPQLVSAL-----EINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 34 ~a~~lglf~~L~~~~~~~t~~ela~~~-----~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
+-.+.-|++.|...+++.|++||.+.+ ++ +...+.|.|+.|++.|++.+..
T Consensus 21 T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~i---s~aTVYR~L~~L~e~Glv~~~~ 76 (145)
T 2fe3_A 21 TPQRHAILEYLVNSMAHPTADDIYKALEGKFPNM---SVATVYNNLRVFRESGLVKELT 76 (145)
T ss_dssp CHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTC---CHHHHHHHHHHHHHTTSEEEEC
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC---ChhhHHHHHHHHHHCCCEEEEe
Confidence 344556788886645799999999999 66 6789999999999999998764
No 438
>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*
Probab=89.14 E-value=0.58 Score=40.37 Aligned_cols=95 Identities=18% Similarity=0.243 Sum_probs=62.8
Q ss_pred CCCeEEEeCCCcchHHHHHHHH-------CCCCeEEEeec----cccccc------------------------------
Q 018205 194 GLGSLVDVGGGTGSFARIISEA-------FPGIKCTVLDL----PHVVPK------------------------------ 232 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~-------~p~~~~~~~D~----~~~~~~------------------------------ 232 (359)
-+..|+|+|+-.|..+..++.. .++.+++++|. |+.-+.
T Consensus 69 vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~ 148 (257)
T 3tos_A 69 VPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHE 148 (257)
T ss_dssp SCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHH
T ss_pred CCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHh
Confidence 3579999999999988886642 36789999995 221000
Q ss_pred --CC---CCCCceEeeCCCCCCC-------C--CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 233 --VP---DTDNLKFIAGDMFQSI-------P--PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 233 --a~---~~~~v~~~~~d~~~~~-------p--~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
.+ ..++++++.|++.+.+ | .+|++++-.=.+ +.....+..+...|+| |.++++|..
T Consensus 149 ~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~Y----~~t~~~le~~~p~l~~----GGvIv~DD~ 218 (257)
T 3tos_A 149 CSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDLY----EPTKAVLEAIRPYLTK----GSIVAFDEL 218 (257)
T ss_dssp TTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCCH----HHHHHHHHHHGGGEEE----EEEEEESST
T ss_pred hhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCccc----chHHHHHHHHHHHhCC----CcEEEEcCC
Confidence 00 1378999999985422 3 378887744221 3345689999999999 555555543
No 439
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=89.09 E-value=0.19 Score=39.50 Aligned_cols=46 Identities=11% Similarity=0.272 Sum_probs=39.0
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeee
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTA 86 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~ 86 (359)
+..|+..|.+ +++.|..|||+.+|+ .+..+.+.++.|...|++...
T Consensus 11 d~~il~~L~~-~~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~ 56 (151)
T 2dbb_A 11 DMQLVKILSE-NSRLTYRELADILNT---TRQRIARRIDKLKKLGIIRKF 56 (151)
T ss_dssp HHHHHHHHHH-CTTCCHHHHHHHTTS---CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEE
Confidence 3456677766 378999999999999 678999999999999999865
No 440
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=89.06 E-value=0.79 Score=35.30 Aligned_cols=35 Identities=20% Similarity=0.453 Sum_probs=33.1
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeee
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTA 86 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~ 86 (359)
++.|..+||+.+|+ +...+.+.++.|+..|+++..
T Consensus 40 ~~~t~~ela~~l~~---~~stvs~~l~~L~~~G~v~r~ 74 (152)
T 1ku9_A 40 KPLTISDIMEELKI---SKGNVSMSLKKLEELGFVRKV 74 (152)
T ss_dssp SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEE
Confidence 68999999999999 689999999999999999886
No 441
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=89.06 E-value=0.29 Score=40.08 Aligned_cols=57 Identities=16% Similarity=0.276 Sum_probs=45.0
Q ss_pred HhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCc-eeeecccccccCccceEecccc
Q 018205 36 VELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGF-FSTANVQSAQQQEEEAYALTLT 104 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gl-l~~~~~~~~~~~~~~~~~~t~~ 104 (359)
-...|...|.+.++++|+.|||+.+|+ ..+.++|-++.|...|+ +... .+.|.+...
T Consensus 22 R~~~Il~~L~~~~~~~s~~eLa~~l~v---S~~Ti~rdi~~L~~~G~~I~~~---------~~Gy~l~~~ 79 (187)
T 1j5y_A 22 RLKSIVRILERSKEPVSGAQLAEELSV---SRQVIVQDIAYLRSLGYNIVAT---------PRGYVLAGG 79 (187)
T ss_dssp HHHHHHHHHHHCSSCBCHHHHHHHHTS---CHHHHHHHHHHHHHHTCCCEEE---------TTEEECCTT
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEE---------CCEEEECCc
Confidence 445677777653357999999999999 68999999999999999 7654 366777654
No 442
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=89.05 E-value=0.18 Score=37.96 Aligned_cols=75 Identities=21% Similarity=0.330 Sum_probs=51.0
Q ss_pred HHHHHHHhcCcchhcccCCCCCCHHHHHHhcC------CCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccc
Q 018205 30 TSLKCAVELDIPEVIHKHGRPITLPQLVSALE------INPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTL 103 (359)
Q Consensus 30 ~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~------~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~ 103 (359)
+++.-..++-|+..|.+ +|.+.-+|++.+. + +...+...|+.|+..|+++..............|++|+
T Consensus 9 ~l~~g~l~~~IL~lL~~--~p~~gyel~~~l~~~~~~~i---~~gtly~~L~~Le~~GlI~~~~~~~~~~~~rk~Y~lT~ 83 (117)
T 3elk_A 9 RILHGLITLYILKELVK--RPMHGYELQKSMFETTGQAL---PQGSIYILLKTMKERGFVISESSVNEKGQQLTVYHITD 83 (117)
T ss_dssp HHHHHHHHHHHHHHHHH--SCEEHHHHHHHHHHHHSCCC---CTTHHHHHHHHHHHHTSEEEEEEEC-CCCEEEEEEECH
T ss_pred HHHhhHHHHHHHHHHHc--CCCCHHHHHHHHHHHhCCCC---CcchHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECH
Confidence 34445555666667766 7999999988876 6 56899999999999999986531000000123599999
Q ss_pred cccccc
Q 018205 104 TSKLFL 109 (359)
Q Consensus 104 ~~~~l~ 109 (359)
.++...
T Consensus 84 ~G~~~l 89 (117)
T 3elk_A 84 AGKKFL 89 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887444
No 443
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=88.77 E-value=0.22 Score=40.19 Aligned_cols=46 Identities=15% Similarity=0.258 Sum_probs=39.1
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeee
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTA 86 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~ 86 (359)
+..|+..|.. +++.|..|||+++|+ .+..+.+.++.|...|++...
T Consensus 19 d~~IL~~L~~-~~~~s~~eLA~~lgl---S~~tv~~~l~~L~~~G~I~~~ 64 (171)
T 2ia0_A 19 DRNILRLLKK-DARLTISELSEQLKK---PESTIHFRIKKLQERGVIERY 64 (171)
T ss_dssp HHHHHHHHHH-CTTCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEee
Confidence 3456777766 368999999999999 689999999999999999754
No 444
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=88.76 E-value=0.16 Score=40.06 Aligned_cols=46 Identities=11% Similarity=0.229 Sum_probs=38.6
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeee
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTA 86 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~ 86 (359)
+..|+..|.+ +++.|..|||+++|+ .+..+.+.++.|.+.|++...
T Consensus 9 ~~~il~~L~~-~~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~ 54 (151)
T 2cyy_A 9 DKKIIKILQN-DGKAPLREISKITGL---AESTIHERIRKLRESGVIKKF 54 (151)
T ss_dssp HHHHHHHHHH-CTTCCHHHHHHHHCS---CHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEE
Confidence 3446666665 368999999999999 689999999999999999764
No 445
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=88.56 E-value=0.3 Score=37.26 Aligned_cols=35 Identities=17% Similarity=0.312 Sum_probs=32.3
Q ss_pred CCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 50 PITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 50 ~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
..|.++||+.+|+ +...+.+.++.|+..|+|....
T Consensus 51 ~ps~~~LA~~l~~---s~~~V~~~l~~Le~kGlI~~~~ 85 (128)
T 2vn2_A 51 FPTPAELAERMTV---SAAECMEMVRRLLQKGMIAIEE 85 (128)
T ss_dssp SCCHHHHHHTSSS---CHHHHHHHHHHHHHTTSSEECC
T ss_pred CCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe
Confidence 4799999999999 7899999999999999999864
No 446
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26
Probab=88.56 E-value=1.4 Score=39.70 Aligned_cols=125 Identities=10% Similarity=0.123 Sum_probs=72.4
Q ss_pred CCeEEEeCCCcchHHHHHHHHCCCC-eEEEeeccc-ccccCC-CCCCceEeeCCCCCC----CC--CccEEEEcchhccC
Q 018205 195 LGSLVDVGGGTGSFARIISEAFPGI-KCTVLDLPH-VVPKVP-DTDNLKFIAGDMFQS----IP--PADAFFFKAIFHAF 265 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~~~-~~~~a~-~~~~v~~~~~d~~~~----~p--~~D~i~~~~vl~~~ 265 (359)
..+|+|+-||.|.+...+.+..-.. .+.++|+.. .++..+ ..+...++.+|+.+- ++ .+|+++...-...+
T Consensus 2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~~~~~~~Di~~~~~~~~~~~~~D~l~~gpPCq~f 81 (343)
T 1g55_A 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPF 81 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC----
T ss_pred CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccccccccCCHHHccHhHcCcCCcCEEEEcCCCcch
Confidence 3589999999999999999884222 478889844 555443 234456788888542 22 58999975443222
Q ss_pred C--------chHHHHHHHHHHHhcccCCCC--cEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHH
Q 018205 266 V--------DEDCLKILKRCREAIASRGDR--GKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLF 335 (359)
Q Consensus 266 ~--------~~~~~~~L~~~~~~L~p~~~g--G~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll 335 (359)
+ ++..-.++.++.++++.. . -.+++.|.+..-.. + .+.+.+.+.|
T Consensus 82 S~ag~~~g~~d~r~~l~~~~~~~i~~~--~~~P~~~~~ENV~~l~~---------------------~--~~~~~i~~~l 136 (343)
T 1g55_A 82 TRIGRQGDMTDSRTNSFLHILDILPRL--QKLPKYILLENVKGFEV---------------------S--STRDLLIQTI 136 (343)
T ss_dssp --------------CHHHHHHHHGGGC--SSCCSEEEEEEETTGGG---------------------S--HHHHHHHHHH
T ss_pred hhcCCcCCccCccchHHHHHHHHHHHh--cCCCCEEEEeCCccccC---------------------H--HHHHHHHHHH
Confidence 2 111123455444554320 1 25777776653110 0 1345677888
Q ss_pred HHcCCceeE
Q 018205 336 LDAGFSHFK 344 (359)
Q Consensus 336 ~~aGf~~~~ 344 (359)
++.||.+..
T Consensus 137 ~~~GY~v~~ 145 (343)
T 1g55_A 137 ENCGFQYQE 145 (343)
T ss_dssp HHTTEEEEE
T ss_pred HHCCCeeEE
Confidence 889987644
No 447
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=88.55 E-value=0.13 Score=39.14 Aligned_cols=66 Identities=12% Similarity=0.261 Sum_probs=45.9
Q ss_pred cCcchhcccC-CCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc-cceEeccccccccc
Q 018205 38 LDIPEVIHKH-GRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE-EEAYALTLTSKLFL 109 (359)
Q Consensus 38 lglf~~L~~~-~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~-~~~~~~t~~~~~l~ 109 (359)
+.++..|... +++.|..+||+.+++ +...+.++++.|+..|++++... +.|. .-.+.+|+.++.+.
T Consensus 40 ~~vL~~l~~~~~~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~---~~D~R~~~i~LT~~G~~~~ 107 (127)
T 2frh_A 40 FAVLTYISENKEKEYYLKDIINHLNY---KQPQVVKAVKILSQEDYFDKKRN---EHDERTVLILVNAQQRKKI 107 (127)
T ss_dssp HHHHHHHHHTCCSEEEHHHHHHHSSS---HHHHHHHHHHHHHHTTSSCCBCC---SSSSCCCEEECCSHHHHHH
T ss_pred HHHHHHHHhccCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecCC---CCCCCeeEEEECHHHHHHH
Confidence 3345555442 258999999999999 68999999999999999988531 1110 12366777665443
No 448
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=88.32 E-value=0.21 Score=39.82 Aligned_cols=46 Identities=7% Similarity=0.270 Sum_probs=39.6
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeee
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTA 86 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~ 86 (359)
+..|+..|.+ ++++|..+||+++|+ .+..+.+-++.|...|++...
T Consensus 5 d~~il~~L~~-~~~~s~~~la~~lg~---s~~tv~~rl~~L~~~g~i~~~ 50 (162)
T 3i4p_A 5 DRKILRILQE-DSTLAVADLAKKVGL---STTPCWRRIQKMEEDGVIRRR 50 (162)
T ss_dssp HHHHHHHHTT-CSCSCHHHHHHHHTC---CHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHH-CCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeeec
Confidence 4567778876 479999999999999 678999999999999999754
No 449
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=88.25 E-value=0.17 Score=36.13 Aligned_cols=45 Identities=11% Similarity=0.189 Sum_probs=36.8
Q ss_pred cchhcccCC-CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 40 IPEVIHKHG-RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 40 lf~~L~~~~-~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
|+..|.+.+ .+++..+|++++++ +...+.++|+.|+..||+.+..
T Consensus 25 Vl~~I~~~g~~gi~qkeLa~~~~l---~~~tvt~iLk~LE~kglIkr~~ 70 (91)
T 2dk5_A 25 VYQIIEDAGNKGIWSRDVRYKSNL---PLTEINKILKNLESKKLIKAVK 70 (91)
T ss_dssp HHHHHHHHCTTCEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHcCCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEec
Confidence 444554421 48999999999999 7899999999999999999654
No 450
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=88.24 E-value=0.09 Score=39.67 Aligned_cols=36 Identities=11% Similarity=0.281 Sum_probs=32.9
Q ss_pred CCCCHHHHHHhcC----CCCCCcccHHHHHHHHHccCceeeec
Q 018205 49 RPITLPQLVSALE----INPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 49 ~~~t~~ela~~~~----~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
++.|..+||+.++ + ....+.++|+.|+..|++.+..
T Consensus 23 ~~~t~~ela~~l~~~~~~---s~~tv~~~l~~L~~~Glv~r~~ 62 (123)
T 1okr_A 23 KYASANNIIEEIQMQKDW---SPKTIRTLITRLYKKGFIDRKK 62 (123)
T ss_dssp SSEEHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHTSEEEEE
T ss_pred CCcCHHHHHHHHhccCCC---cHhhHHHHHHHHHHCCCeEEEe
Confidence 6899999999999 6 5789999999999999999875
No 451
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=88.15 E-value=0.42 Score=35.87 Aligned_cols=73 Identities=18% Similarity=0.214 Sum_probs=48.6
Q ss_pred HHHHHhcCcchhcccCCCCCCHHHHHHhc------CCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccc
Q 018205 32 LKCAVELDIPEVIHKHGRPITLPQLVSAL------EINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTS 105 (359)
Q Consensus 32 l~~a~~lglf~~L~~~~~~~t~~ela~~~------~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~ 105 (359)
++-.+++=|+..|.+ +|.+--+|++.+ ++ +...+...|+.|+..|+|+..............|++|+.+
T Consensus 8 ~~g~l~~~IL~lL~~--~p~~Gyei~~~l~~~g~~~i---s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G 82 (117)
T 4esf_A 8 LKGSLEGCVLEIISR--RETYGYEITRHLNDLGFTEV---VEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYSLNEAG 82 (117)
T ss_dssp HHHHHHHHHHHHHHH--SCBCHHHHHHHHHHHTCTTC---CHHHHHHHHHHHHHTTCEEEEEEC-----CEEEEEECHHH
T ss_pred HHChHHHHHHHHHHc--CCCCHHHHHHHHHHcCCCCC---CccHHHHHHHHHHHCCCEEEEeecCCCCCCceEEEECHHH
Confidence 333444445556665 799999999887 56 6789999999999999998763110000012348899887
Q ss_pred cccc
Q 018205 106 KLFL 109 (359)
Q Consensus 106 ~~l~ 109 (359)
+...
T Consensus 83 ~~~l 86 (117)
T 4esf_A 83 RQEL 86 (117)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6443
No 452
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=87.93 E-value=0.19 Score=38.92 Aligned_cols=45 Identities=18% Similarity=0.239 Sum_probs=37.4
Q ss_pred cCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeee
Q 018205 38 LDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTA 86 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~ 86 (359)
..|...|.. +++.|..|||+.+|+ +...+.+.|+.|...|++...
T Consensus 7 ~~il~~L~~-~~~~~~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~ 51 (141)
T 1i1g_A 7 KIILEILEK-DARTPFTEIAKKLGI---SETAVRKRVKALEEKGIIEGY 51 (141)
T ss_dssp HHHHHHHHH-CTTCCHHHHHHHHTS---CHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEecc
Confidence 345556654 368999999999999 689999999999999999755
No 453
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=87.86 E-value=0.19 Score=39.34 Aligned_cols=53 Identities=9% Similarity=0.182 Sum_probs=41.1
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccc---eEeccccccccc
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEE---AYALTLTSKLFL 109 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~---~~~~t~~~~~l~ 109 (359)
+++|..+||+.+++ +...+.++++.|+..|++++.... . +. ...+|+.++.+.
T Consensus 50 ~~~t~~eLa~~l~~---~~~tvs~~v~~Le~~Glv~r~~~~---~--DrR~~~l~LT~~G~~~~ 105 (147)
T 4b8x_A 50 GELPMSKIGERLMV---HPTSVTNTVDRLVRSGLVAKRPNP---N--DGRGTLATITDKGREVV 105 (147)
T ss_dssp GEEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECC---------CEEEEECHHHHHHH
T ss_pred CCcCHHHHHHHHCC---CHHHHHHHHHHHHhCCCEEEeecC---C--cCceeEEEECHHHHHHH
Confidence 68999999999999 789999999999999999987421 1 22 266777766443
No 454
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=87.70 E-value=0.22 Score=40.19 Aligned_cols=47 Identities=11% Similarity=0.246 Sum_probs=39.9
Q ss_pred HhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeee
Q 018205 36 VELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTA 86 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~ 86 (359)
.+..|+..|.+ +++.|..|||+++|+ .+..+.+.|+.|.+.|++...
T Consensus 28 ~d~~IL~~L~~-~~~~s~~eLA~~lgl---S~~tv~~rl~~L~~~G~I~~~ 74 (171)
T 2e1c_A 28 IDKKIIKILQN-DGKAPLREISKITGL---AESTIHERIRKLRESGVIKKF 74 (171)
T ss_dssp HHHHHHHHHHH-CTTCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEee
Confidence 44567777766 379999999999999 689999999999999999764
No 455
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}
Probab=87.32 E-value=2 Score=39.21 Aligned_cols=97 Identities=12% Similarity=0.163 Sum_probs=61.2
Q ss_pred CeEEEeCCCcchHHHHHHHHCCCCe-EEEeeccc-ccccCC-CCCCceEeeCCCCCC----C-------CCccEEEEcch
Q 018205 196 GSLVDVGGGTGSFARIISEAFPGIK-CTVLDLPH-VVPKVP-DTDNLKFIAGDMFQS----I-------PPADAFFFKAI 261 (359)
Q Consensus 196 ~~vlDvG~G~G~~~~~l~~~~p~~~-~~~~D~~~-~~~~a~-~~~~v~~~~~d~~~~----~-------p~~D~i~~~~v 261 (359)
.+++|+-||.|.++..+.++ +.+ +.++|+.. .++..+ ..+...++.+|+.+- + +.+|+|+..--
T Consensus 3 ~~vidLFsG~GGlslG~~~a--G~~~v~avE~d~~a~~t~~~N~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ggpP 80 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARA--GFDVKMAVEIDQHAINTHAINFPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGPP 80 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHH--TCEEEEEECSCHHHHHHHHHHCTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEECCC
T ss_pred CeEEEEccCcCHHHHHHHHC--CCcEEEEEeCCHHHHHHHHHhCCCCceEecChhhcCHHHHHhhcccCCCeeEEEecCC
Confidence 58999999999999999888 454 56889844 444333 245677888888541 1 35899996543
Q ss_pred hccCC-------chHHHHHHHHHH---HhcccCCCCcEEEEEeeecCC
Q 018205 262 FHAFV-------DEDCLKILKRCR---EAIASRGDRGKVIIIDIVINE 299 (359)
Q Consensus 262 l~~~~-------~~~~~~~L~~~~---~~L~p~~~gG~lli~~~~~~~ 299 (359)
...++ ++....++.++. +.++| .+++.|.+..-
T Consensus 81 CQ~fS~ag~~~~~d~r~~L~~~~~~~v~~~~P-----~~~v~ENV~gl 123 (376)
T 3g7u_A 81 CQGFSSIGKGNPDDSRNQLYMHFYRLVSELQP-----LFFLAENVPGI 123 (376)
T ss_dssp CCTTC-------CHHHHHHHHHHHHHHHHHCC-----SEEEEEECTTT
T ss_pred CCCcccccCCCCCCchHHHHHHHHHHHHHhCC-----CEEEEecchHh
Confidence 33332 122223444333 44566 68888877543
No 456
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=87.28 E-value=0.27 Score=37.96 Aligned_cols=50 Identities=12% Similarity=0.304 Sum_probs=40.7
Q ss_pred HHhcCcchhcccCC-CCCCHHHHHHhc-----CCCCCCcccHHHHHHHHHccCceeeec
Q 018205 35 AVELDIPEVIHKHG-RPITLPQLVSAL-----EINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 35 a~~lglf~~L~~~~-~~~t~~ela~~~-----~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
-.+.-|++.|...+ ++.|++||.+.+ ++ +...+.|.|+.|++.|++.+..
T Consensus 18 ~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~i---s~aTVYR~L~~L~e~Glv~~~~ 73 (136)
T 1mzb_A 18 LPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDV---GLATVYRVLTQFEAAGLVVRHN 73 (136)
T ss_dssp HHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCC---CHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCC---CHHHHHHHHHHHHHCCcEEEEE
Confidence 34555778887644 689999999998 56 6789999999999999998764
No 457
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=87.26 E-value=0.37 Score=37.92 Aligned_cols=51 Identities=10% Similarity=0.344 Sum_probs=42.9
Q ss_pred HHHhcCcchhcccCCCCCCHHHHHHhc-----CCCCCCcccHHHHHHHHHccCceeeec
Q 018205 34 CAVELDIPEVIHKHGRPITLPQLVSAL-----EINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 34 ~a~~lglf~~L~~~~~~~t~~ela~~~-----~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
+..+.-|++.|...+++.|++||.+.+ ++ +...+.|.|+.|+..|++.+..
T Consensus 26 T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~i---s~aTVYR~L~~L~e~Glv~~~~ 81 (150)
T 2xig_A 26 SKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNT---SISSVYRILNFLEKENFISVLE 81 (150)
T ss_dssp HHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC---CHhhHHHHHHHHHHCCcEEEEE
Confidence 556667888887655799999999998 56 6789999999999999998764
No 458
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=87.20 E-value=0.34 Score=30.72 Aligned_cols=45 Identities=13% Similarity=0.347 Sum_probs=38.2
Q ss_pred CcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeee
Q 018205 39 DIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTA 86 (359)
Q Consensus 39 glf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~ 86 (359)
.|++-+...||-+.++..++..|+ ..+-+..+|+-|.+.|++.-+
T Consensus 14 ~lL~yIr~sGGildI~~~a~kygV---~kdeV~~~LrrLe~KGLI~le 58 (59)
T 2xvc_A 14 ELLDYIVNNGGFLDIEHFSKVYGV---EKQEVVKLLEALKNKGLIAVE 58 (59)
T ss_dssp HHHHHHHHTTSEEEHHHHHHHHCC---CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCEEeHHHHHHHhCC---CHHHHHHHHHHHHHCCCeecc
Confidence 456667766788899999999999 678899999999999999754
No 459
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=86.86 E-value=0.27 Score=38.52 Aligned_cols=35 Identities=11% Similarity=0.306 Sum_probs=28.7
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeee
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTA 86 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~ 86 (359)
+++|..+||+.+++ +...+.++++.|+..|++...
T Consensus 51 ~~~t~~eLa~~l~~---~~~tvsr~v~~Le~~glVr~~ 85 (148)
T 4fx0_A 51 IDLTMSELAARIGV---ERTTLTRNLEVMRRDGLVRVM 85 (148)
T ss_dssp ---CHHHHHHHHTC---CHHHHHHHHHHHHHTTSBC--
T ss_pred CCcCHHHHHHHHCC---ChhhHHHHHHHHHHCCCEEee
Confidence 46899999999999 789999999999999999543
No 460
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=86.76 E-value=0.51 Score=35.28 Aligned_cols=75 Identities=15% Similarity=0.223 Sum_probs=50.0
Q ss_pred HHHHHHHhcCcchhcccCCCCCCHHHHHHhc--------CCCCCCcccHHHHHHHHHccCceeeecccccccCccceEec
Q 018205 30 TSLKCAVELDIPEVIHKHGRPITLPQLVSAL--------EINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYAL 101 (359)
Q Consensus 30 ~~l~~a~~lglf~~L~~~~~~~t~~ela~~~--------~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~ 101 (359)
.+++-..++=|+..|.+ +|.+--+|.+.+ ++ +...+.+.|+.|+..|+++.......+......|++
T Consensus 7 ~~~~g~l~~~IL~~L~~--~~~~Gyei~~~l~~~~~~~~~i---~~gtly~~L~rLe~~GlI~~~~~~~~~~~~rk~Y~L 81 (116)
T 3f8b_A 7 EMLRAQTNVILLNVLKQ--GDNYVYGIIKQVKEASNGEMEL---NEATLYTIFKRLEKDGIISSYWGDESQGGRRKYYRL 81 (116)
T ss_dssp HHHHHHHHHHHHHHHHH--CCBCHHHHHHHHHHHTTTCCCC---CHHHHHHHHHHHHHTTSEEEEEEC----CCEEEEEE
T ss_pred HHHhchHHHHHHHHHHh--CCCCHHHHHHHHHHHhCCCCCC---CcchHHHHHHHHHHCCCEEEEeeccCCCCCceEEEE
Confidence 34444455556667766 799988998887 45 678999999999999999875310000001234889
Q ss_pred cccccccc
Q 018205 102 TLTSKLFL 109 (359)
Q Consensus 102 t~~~~~l~ 109 (359)
|+.++...
T Consensus 82 T~~G~~~l 89 (116)
T 3f8b_A 82 TEIGHENM 89 (116)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 98876443
No 461
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=86.42 E-value=0.58 Score=34.10 Aligned_cols=45 Identities=13% Similarity=0.237 Sum_probs=35.9
Q ss_pred CcchhcccCCCCC-CHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 39 DIPEVIHKHGRPI-TLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 39 glf~~L~~~~~~~-t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
.|...+.. |+.+ |..+||+.+|+ ....+++-|+.|...|+++...
T Consensus 32 ~I~~~l~~-g~~lps~~eLa~~lgV---Sr~tVr~al~~L~~~GlI~~~~ 77 (102)
T 2b0l_A 32 HIFEELDG-NEGLLVASKIADRVGI---TRSVIVNALRKLESAGVIESRS 77 (102)
T ss_dssp HHTTSSBT-TEEEECHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHhhhcC-CCcCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe
Confidence 34444544 3455 99999999999 6789999999999999998764
No 462
>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*
Probab=86.41 E-value=3.7 Score=36.47 Aligned_cols=121 Identities=15% Similarity=0.197 Sum_probs=71.2
Q ss_pred CeEEEeCCCcchHHHHHHHHCCCCe-EEEeeccc-ccccCCCCCCceEeeCCCCC----CCCCccEEEEcchhcc-----
Q 018205 196 GSLVDVGGGTGSFARIISEAFPGIK-CTVLDLPH-VVPKVPDTDNLKFIAGDMFQ----SIPPADAFFFKAIFHA----- 264 (359)
Q Consensus 196 ~~vlDvG~G~G~~~~~l~~~~p~~~-~~~~D~~~-~~~~a~~~~~v~~~~~d~~~----~~p~~D~i~~~~vl~~----- 264 (359)
.+|+|+=||.|.+...+.+. +.+ +.++|+.. .++.-+..-.-.++.+|+.+ .+|.+|+++.+.=...
T Consensus 1 mkvidLFsG~GG~~~G~~~a--G~~~v~a~e~d~~a~~ty~~N~~~~~~~~DI~~i~~~~~~~~D~l~ggpPCQ~fS~ag 78 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKA--GFRIICANEYDKSIWKTYESNHSAKLIKGDISKISSDEFPKCDGIIGGPPSQSWSEGG 78 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHT--TCEEEEEEECCTTTHHHHHHHCCSEEEESCGGGCCGGGSCCCSEEECCCCGGGTEETT
T ss_pred CeEEEeCcCccHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHHCCCCcccCChhhCCHhhCCcccEEEecCCCCCcCCCC
Confidence 47999999999999998877 454 45778843 44332221223677888843 3667999985422111
Q ss_pred ----CCchHHHHHHHH---HHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHH
Q 018205 265 ----FVDEDCLKILKR---CREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLD 337 (359)
Q Consensus 265 ----~~~~~~~~~L~~---~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~ 337 (359)
..|+. -.++.+ +.+.++| .+++.|.+..-.. ..++ ...+.+.+.|++
T Consensus 79 ~~~g~~d~R-~~L~~~~~r~i~~~~P-----k~~~~ENV~gl~~------------------~~~~--~~~~~i~~~l~~ 132 (331)
T 3ubt_Y 79 SLRGIDDPR-GKLFYEYIRILKQKKP-----IFFLAENVKGMMA------------------QRHN--KAVQEFIQEFDN 132 (331)
T ss_dssp EECCTTCGG-GHHHHHHHHHHHHHCC-----SEEEEEECCGGGG------------------CTTS--HHHHHHHHHHHH
T ss_pred CccCCCCch-hHHHHHHHHHHhccCC-----eEEEeeeeccccc------------------cccc--chhhhhhhhhcc
Confidence 22332 234443 3445577 5788887643110 0111 134667788888
Q ss_pred cCCceeE
Q 018205 338 AGFSHFK 344 (359)
Q Consensus 338 aGf~~~~ 344 (359)
.||.+..
T Consensus 133 ~GY~v~~ 139 (331)
T 3ubt_Y 133 AGYDVHI 139 (331)
T ss_dssp HTEEEEE
T ss_pred CCcEEEE
Confidence 9987543
No 463
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=86.02 E-value=0.37 Score=37.38 Aligned_cols=51 Identities=8% Similarity=0.145 Sum_probs=41.6
Q ss_pred HHHhcCcchhcccCCCCCCHHHHHHhc-----CCCCCCcccHHHHHHHHHccCceeeec
Q 018205 34 CAVELDIPEVIHKHGRPITLPQLVSAL-----EINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 34 ~a~~lglf~~L~~~~~~~t~~ela~~~-----~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
+..+.-|++.|...+++.|++||.+.+ ++ +...+.|.|+.|++.|++.+..
T Consensus 13 T~qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~~i---s~aTVYR~L~~L~e~Glv~~~~ 68 (139)
T 3mwm_A 13 TRQRAAVSAALQEVEEFRSAQELHDMLKHKGDAV---GLTTVYRTLQSLADAGEVDVLR 68 (139)
T ss_dssp HHHHHHHHHHHTTCSSCEEHHHHHHHHHHTTCCC---CHHHHHHHHHHHHHTTSSEEEE
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHCCCEEEEE
Confidence 445666778887655799999999988 45 6789999999999999998764
No 464
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=85.79 E-value=0.52 Score=36.36 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=32.3
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeee
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTA 86 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~ 86 (359)
...|.++||+++|+ +.+-+.+.|+.|...|+++..
T Consensus 50 ~~ps~~~LA~~~~~---s~~~v~~~L~~L~~KGlI~i~ 84 (135)
T 2v79_A 50 YFPTPNQLQEGMSI---SVEECTNRLRMFIQKGFLFIE 84 (135)
T ss_dssp CSCCHHHHHTTSSS---CHHHHHHHHHHHHHHTSCEEE
T ss_pred CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEE
Confidence 46799999999999 789999999999999999975
No 465
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=85.55 E-value=0.35 Score=37.38 Aligned_cols=47 Identities=13% Similarity=0.215 Sum_probs=37.4
Q ss_pred cCcchhcccCCCCCCHHHHHHhcC----CCCCCcccHHHHHHHHHccCceeeec
Q 018205 38 LDIPEVIHKHGRPITLPQLVSALE----INPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~ela~~~~----~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
..|+..|...+++.|..+|++.++ + +...+.++|+-|+..|+|.+..
T Consensus 12 ~~vL~~L~~~~~~~t~~el~~~l~~~~~~---~~~Tvt~~l~rLe~kGlv~r~~ 62 (138)
T 2g9w_A 12 RAVMDHLWSRTEPQTVRQVHEALSARRDL---AYTTVMAVLQRLAKKNLVLQIR 62 (138)
T ss_dssp HHHHHHHHTCSSCEEHHHHHHHHTTTCCC---CHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHhccCCC---CHHHHHHHHHHHHHCCCEEEEe
Confidence 344455543126899999999998 5 5789999999999999999875
No 466
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=85.22 E-value=0.29 Score=38.33 Aligned_cols=71 Identities=14% Similarity=0.156 Sum_probs=48.5
Q ss_pred HHHhcCcchhcccCCCCCCHHHHHHhc--------CCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccc
Q 018205 34 CAVELDIPEVIHKHGRPITLPQLVSAL--------EINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTS 105 (359)
Q Consensus 34 ~a~~lglf~~L~~~~~~~t~~ela~~~--------~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~ 105 (359)
--.++-|+..|.+ +|++.-||++.+ ++ ....+.+.|+.|+..|+|+............-.|++|+.+
T Consensus 40 g~~~~~IL~~L~~--~~~~gyeI~~~l~~~~~~~~~i---s~gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y~LT~~G 114 (145)
T 1xma_A 40 GYVDTIILSLLIE--GDSYGYEISKNIRIKTDELYVI---KETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYRITPEG 114 (145)
T ss_dssp GTHHHHHHHHHHH--CCEEHHHHHHHHHHHHTTSCCC---CHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEEECHHH
T ss_pred CcHHHHHHHHHHh--CCCCHHHHHHHHHHhhCCccCc---ChhHHHHHHHHHHHCCCEEEEEeccCCCCCeEEEEECHHH
Confidence 3445556666665 689988988887 46 6799999999999999998763210000012358889887
Q ss_pred cccc
Q 018205 106 KLFL 109 (359)
Q Consensus 106 ~~l~ 109 (359)
+.+.
T Consensus 115 ~~~l 118 (145)
T 1xma_A 115 IKYY 118 (145)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 467
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=84.97 E-value=0.68 Score=42.44 Aligned_cols=54 Identities=13% Similarity=0.250 Sum_probs=42.3
Q ss_pred HHHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 29 STSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 29 ~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
.++++...+..|++.|. . +++|..|||+.+|+ ....+.++++.|.+.|++.+.+
T Consensus 14 ~~~~~~~~~~~il~~l~-~-~~~sr~~la~~~gl---s~~tv~~~v~~L~~~gli~~~~ 67 (380)
T 2hoe_A 14 PKSVRAENISRILKRIM-K-SPVSRVELAEELGL---TKTTVGEIAKIFLEKGIVVEEK 67 (380)
T ss_dssp --------CCCSHHHHH-H-SCBCHHHHHHHHTC---CHHHHHHHHHHHHHHTSEEEEE
T ss_pred chhHHHHHHHHHHHHHH-c-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeec
Confidence 45677778888999998 4 79999999999999 6899999999999999998864
No 468
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*
Probab=84.74 E-value=1.7 Score=38.69 Aligned_cols=84 Identities=17% Similarity=0.113 Sum_probs=51.9
Q ss_pred CCeEEEeCCCc--chHHHHHHHHCCCCeEEEeeccc-ccccCCCCCCceEeeCCCCC-CCCCccEEEEcchhccCCchHH
Q 018205 195 LGSLVDVGGGT--GSFARIISEAFPGIKCTVLDLPH-VVPKVPDTDNLKFIAGDMFQ-SIPPADAFFFKAIFHAFVDEDC 270 (359)
Q Consensus 195 ~~~vlDvG~G~--G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~~v~~~~~d~~~-~~p~~D~i~~~~vl~~~~~~~~ 270 (359)
..+|.=||+|. +.++..+++.....+++++|.+. .++.+.+..-+.-...|..+ ....+|+|+++- +....
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVilav-----p~~~~ 107 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSS-----PVRTF 107 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEECS-----CGGGH
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEeC-----CHHHH
Confidence 36899999885 34555566553323899999843 54444322222222334423 345689998753 44456
Q ss_pred HHHHHHHHHhccc
Q 018205 271 LKILKRCREAIAS 283 (359)
Q Consensus 271 ~~~L~~~~~~L~p 283 (359)
..+++++...+++
T Consensus 108 ~~vl~~l~~~l~~ 120 (314)
T 3ggo_A 108 REIAKKLSYILSE 120 (314)
T ss_dssp HHHHHHHHHHSCT
T ss_pred HHHHHHHhhccCC
Confidence 6789999999988
No 469
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=84.61 E-value=0.43 Score=40.44 Aligned_cols=53 Identities=15% Similarity=0.188 Sum_probs=43.3
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccccccc
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFL 109 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
++.|+.++|+.+++ .+..+.+.++.|+..|||++.... ....+++|+.++.+.
T Consensus 26 ~~~s~s~aA~~L~i---sq~avSr~I~~LE~~~L~~R~~~~-----R~~~v~LT~~G~~l~ 78 (230)
T 3cta_A 26 AYLTSSKLADMLGI---SQQSASRIIIDLEKNGYITRTVTK-----RGQILNITEKGLDVL 78 (230)
T ss_dssp EECCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEEET-----TEEEEEECHHHHHHH
T ss_pred CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEEEcC-----CeEEEEECHHHHHHH
Confidence 57899999999999 789999999999999999987310 025688888877555
No 470
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=84.44 E-value=0.28 Score=41.59 Aligned_cols=48 Identities=10% Similarity=0.167 Sum_probs=40.6
Q ss_pred CCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccccccc
Q 018205 51 ITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFL 109 (359)
Q Consensus 51 ~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
.+..+||+.+++ +...+.+.++.|+..|++++.. +..+.+|+.++.+.
T Consensus 25 ~~~~~La~~l~v---s~~tvs~~l~~Le~~GlV~r~~--------~~~v~LT~~G~~~~ 72 (230)
T 1fx7_A 25 PLRARIAERLDQ---SGPTVSQTVSRMERDGLLRVAG--------DRHLELTEKGRALA 72 (230)
T ss_dssp CCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEECT--------TSCEEECHHHHHHH
T ss_pred CcHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeC--------CccEEECHHHHHHH
Confidence 344999999999 6789999999999999999885 46788998886443
No 471
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=84.38 E-value=0.76 Score=34.58 Aligned_cols=54 Identities=9% Similarity=0.099 Sum_probs=42.5
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccc
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTL 103 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~ 103 (359)
.-.|...+.. .|.++.+|++.+++ ++..+..||+.|...|.+.... ++.|..+.
T Consensus 9 ~~~i~~~~~~--~p~~~~~la~~~~~---~~~~~~~~l~~l~~~G~l~~i~--------~~~~~~~~ 62 (121)
T 2pjp_A 9 WQKAEPLFGD--EPWWVRDLAKETGT---DEQAMRLTLRQAAQQGIITAIV--------KDRYYRND 62 (121)
T ss_dssp HHHHGGGCSS--SCEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEE--------TTEEEEHH
T ss_pred HHHHHHHHHh--CCCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEec--------CCceECHH
Confidence 3345556643 57899999999999 7889999999999999998886 56665444
No 472
>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}
Probab=84.01 E-value=1.3 Score=39.63 Aligned_cols=127 Identities=13% Similarity=0.100 Sum_probs=75.0
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCe-E-EEeeccc-ccccCCC-CCCceEeeCCCCCC----CC--CccEEEEcchhc
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIK-C-TVLDLPH-VVPKVPD-TDNLKFIAGDMFQS----IP--PADAFFFKAIFH 263 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~-~-~~~D~~~-~~~~a~~-~~~v~~~~~d~~~~----~p--~~D~i~~~~vl~ 263 (359)
...+++|+-||.|.+...+.+..-+.+ + .++|+.. .++..+. .+.. +..+|+.+- ++ .+|+++.+.-..
T Consensus 9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~-~~~~DI~~~~~~~i~~~~~Dil~ggpPCQ 87 (327)
T 3qv2_A 9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE-VQVKNLDSISIKQIESLNCNTWFMSPPCQ 87 (327)
T ss_dssp CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC-CBCCCTTTCCHHHHHHTCCCEEEECCCCT
T ss_pred CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC-cccCChhhcCHHHhccCCCCEEEecCCcc
Confidence 356899999999999999988742234 4 5899944 4443321 1111 567888541 23 489999654433
Q ss_pred cC-----------CchHHHHHHHHHHH-hcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHH
Q 018205 264 AF-----------VDEDCLKILKRCRE-AIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEW 331 (359)
Q Consensus 264 ~~-----------~~~~~~~~L~~~~~-~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~ 331 (359)
.+ .|+. -.++.++.+ +++.....-.+++.|.+..-.. + .+.+.+
T Consensus 88 ~fs~S~ag~~~~~~d~r-~~L~~~~~r~~i~~~~~~P~~~~lENV~gl~~---------------------~--~~~~~i 143 (327)
T 3qv2_A 88 PYNNSIMSKHKDINDPR-AKSVLHLYRDILPYLINKPKHIFIENVPLFKE---------------------S--LVFKEI 143 (327)
T ss_dssp TCSHHHHTTTCTTTCGG-GHHHHHHHHTTGGGCSSCCSEEEEEECGGGGG---------------------S--HHHHHH
T ss_pred CcccccCCCCCCCcccc-chhHHHHHHHHHHHhccCCCEEEEEchhhhcC---------------------h--HHHHHH
Confidence 33 2332 246666666 5542000136888886643110 0 134678
Q ss_pred HHHHHHcCCceeEE
Q 018205 332 EKLFLDAGFSHFKI 345 (359)
Q Consensus 332 ~~ll~~aGf~~~~~ 345 (359)
.+.|++.||.+...
T Consensus 144 ~~~l~~~GY~v~~~ 157 (327)
T 3qv2_A 144 YNILIKNQYYIKDI 157 (327)
T ss_dssp HHHHHHTTCEEEEE
T ss_pred HHHHHhCCCEEEEE
Confidence 88889999986544
No 473
>3mag_A VP39; methylated adenine, methyltransferase, RNA CAP analog, poly (A) polymerase, mRNA processing, transcription; HET: SAH 3MA; 1.80A {Vaccinia virus} SCOP: c.66.1.25 PDB: 1bky_A* 1jsz_A* 1v39_A* 1p39_A* 1vp9_A* 2vp3_A* 1eam_A* 1jte_A* 1jtf_A* 4dcg_A* 3mct_A* 1b42_A* 1eqa_A* 1av6_A* 3er9_A* 2gaf_A 3er8_A 2ga9_A* 3erc_A*
Probab=83.87 E-value=1.3 Score=38.51 Aligned_cols=35 Identities=26% Similarity=0.443 Sum_probs=29.9
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCC----CeEEEeeccc
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPG----IKCTVLDLPH 228 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~----~~~~~~D~~~ 228 (359)
++..|+=||||.|.+...|++.+|+ ++.+++|+..
T Consensus 60 ~~~~VVYVGSApG~HL~~L~~~fp~~f~~ikWvLiDPap 98 (307)
T 3mag_A 60 DGATVVYIGSAPGTHIRYLRDHFYNLGVIIKWMLIDGRH 98 (307)
T ss_dssp TTCEEEEESCCSCHHHHHHHHHHHHTTCCCEEEEEESSC
T ss_pred CCcEEEEecccCccHHHHHHHhchhhCCCeEEEEEcCCc
Confidence 4579999999999999999998875 5899999833
No 474
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56
Probab=83.31 E-value=1.3 Score=40.99 Aligned_cols=40 Identities=10% Similarity=0.039 Sum_probs=32.3
Q ss_pred CCCCeEEEeCCCcchHHHHHH-HHCCC-CeEEEeec-cccccc
Q 018205 193 QGLGSLVDVGGGTGSFARIIS-EAFPG-IKCTVLDL-PHVVPK 232 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~-~~~p~-~~~~~~D~-~~~~~~ 232 (359)
.+...|+|||++.|.++..++ +..+. .+++++|+ |...+.
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~ 267 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQT 267 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHH
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHH
Confidence 567899999999999999988 56664 79999999 544443
No 475
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=83.18 E-value=0.64 Score=34.76 Aligned_cols=74 Identities=18% Similarity=0.187 Sum_probs=49.0
Q ss_pred HHHHHHhcCcchhcccCCCCCCHHHHHHhc------CCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccc
Q 018205 31 SLKCAVELDIPEVIHKHGRPITLPQLVSAL------EINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLT 104 (359)
Q Consensus 31 ~l~~a~~lglf~~L~~~~~~~t~~ela~~~------~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~ 104 (359)
+++-.+++=|+..|.+ +|.+--||++.+ ++ +...+...|+.|+..|+++..............|++|+.
T Consensus 9 l~~g~l~~~IL~lL~~--~p~~Gyei~~~l~~~g~~~i---s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~lT~~ 83 (116)
T 3hhh_A 9 LLKGILEGLVLAIIQR--KETYGYEITKILNDQGFTEI---VEGTVYTILLRLEKNQWVIAEKKPSEKGPMRKFYRLTSS 83 (116)
T ss_dssp HHTTHHHHHHHHHHHH--SCBCHHHHHHHHHTTSCSSC---CHHHHHHHHHHHHHTTSEEEEEEECC--CEEEEEEECHH
T ss_pred HHhhhHHHHHHHHHhc--CCCCHHHHHHHHHHcCCCCC---CccHHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECHH
Confidence 3333344445566665 799988999887 45 678999999999999999875311000001224889988
Q ss_pred ccccc
Q 018205 105 SKLFL 109 (359)
Q Consensus 105 ~~~l~ 109 (359)
++...
T Consensus 84 G~~~l 88 (116)
T 3hhh_A 84 GEAEL 88 (116)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76443
No 476
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=82.96 E-value=0.55 Score=36.91 Aligned_cols=50 Identities=20% Similarity=0.355 Sum_probs=40.5
Q ss_pred HHhcCcchhcccCC-CCCCHHHHHHhc-----CCCCCCcccHHHHHHHHHccCceeeec
Q 018205 35 AVELDIPEVIHKHG-RPITLPQLVSAL-----EINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 35 a~~lglf~~L~~~~-~~~t~~ela~~~-----~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
-.+.-|++.|...+ ++.|++||.+.+ ++ +...+.|.|+.|+..|++.+..
T Consensus 17 ~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~i---s~aTVYR~L~~L~e~Glv~~~~ 72 (150)
T 2w57_A 17 LPRLKILEVLQQPECQHISAEELYKKLIDLGEEI---GLATVYRVLNQFDDAGIVTRHH 72 (150)
T ss_dssp HHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHCCcEEEEE
Confidence 34455777776544 689999999998 55 6789999999999999998764
No 477
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=82.80 E-value=0.91 Score=38.29 Aligned_cols=49 Identities=12% Similarity=0.175 Sum_probs=41.4
Q ss_pred CCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccccccc
Q 018205 50 PITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFL 109 (359)
Q Consensus 50 ~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
+.+..+||+.+++ +...+.+.++.|+..|++++.. ...+.+|+.++.+.
T Consensus 24 ~~~~~~la~~l~v---s~~tvs~~l~~Le~~GlV~r~~--------~~~v~LT~~G~~~~ 72 (226)
T 2qq9_A 24 TPLRARIAERLEQ---SGPTVSQTVARMERDGLVVVAS--------DRSLQMTPTGRTLA 72 (226)
T ss_dssp CCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEECT--------TSBEEECHHHHHHH
T ss_pred CccHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEeC--------CCCeEECHHHHHHH
Confidence 4456999999999 6789999999999999999885 46789999886443
No 478
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=82.33 E-value=1.7 Score=36.82 Aligned_cols=52 Identities=12% Similarity=0.093 Sum_probs=42.6
Q ss_pred cCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecc
Q 018205 38 LDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALT 102 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t 102 (359)
.-|...|.. ++.|+++||+.+|+ +++.+...|+-|...|+++... +++..+.
T Consensus 168 ~~l~~~l~~--~~~t~~~la~~~~l---~~~~V~~~l~~L~~~~~v~~~~--------~~~~~~~ 219 (232)
T 2qlz_A 168 AILHYLLLN--GRATVEELSDRLNL---KEREVREKISEMARFVPVKIIN--------DNTVVLD 219 (232)
T ss_dssp HHHHHHHHS--SEEEHHHHHHHHTC---CHHHHHHHHHHHTTTSCEEEET--------TTEEEEC
T ss_pred HHHHHHHhc--CCCCHHHHHHHhCc---CHHHHHHHHHHHHhcCCeEEec--------CCeEEec
Confidence 445556665 79999999999999 6899999999999999998765 5666544
No 479
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=82.31 E-value=0.43 Score=41.07 Aligned_cols=67 Identities=13% Similarity=0.198 Sum_probs=47.2
Q ss_pred hcCcchhcccCC-CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCcc-ceEeccccccccc
Q 018205 37 ELDIPEVIHKHG-RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEE-EAYALTLTSKLFL 109 (359)
Q Consensus 37 ~lglf~~L~~~~-~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~-~~~~~t~~~~~l~ 109 (359)
+..++..|...+ +++|..|||+.+++ +...+.++++-|+..|++++... +.|.. -...+|+.++.+.
T Consensus 160 q~~vL~~L~~~~~~~~t~~eLa~~l~i---~~~tvt~~v~rLe~~GlV~R~~~---~~DrR~~~i~LT~~G~~~~ 228 (250)
T 1p4x_A 160 EFTILAIITSQNKNIVLLKDLIETIHH---KYPQTVRALNNLKKQGYLIKERS---TEDERKILIHMDDAQQDHA 228 (250)
T ss_dssp HHHHHHHHHTTTTCCEEHHHHHHHSSS---CHHHHHHHHHHHHHHTSSEEEEC---SSSTTCEEEECCHHHHHHH
T ss_pred HHHHHHHHHhCCCCCcCHHHHHHHHCC---ChhhHHHHHHHHHHCCCEEeeCC---CCCCCeEEEEECHHHHHHH
Confidence 344566665543 35999999999999 78999999999999999998752 11111 1366677665443
No 480
>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...
Probab=82.25 E-value=4.6 Score=36.03 Aligned_cols=121 Identities=18% Similarity=0.173 Sum_probs=69.7
Q ss_pred CCeEEEeCCCcchHHHHHHHHCCCCe-EEEeeccc-ccccCCC-CCCceEeeCCCCC----CCCCccEEEEcchhccCC-
Q 018205 195 LGSLVDVGGGTGSFARIISEAFPGIK-CTVLDLPH-VVPKVPD-TDNLKFIAGDMFQ----SIPPADAFFFKAIFHAFV- 266 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~p~~~-~~~~D~~~-~~~~a~~-~~~v~~~~~d~~~----~~p~~D~i~~~~vl~~~~- 266 (359)
..+++|+.||.|.+...+.+. +.+ +.++|+.. .++..+. .+... .+|+.+ .++.+|+++...-...++
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~a--G~~~v~~~e~d~~a~~t~~~N~~~~~--~~Di~~~~~~~~~~~D~l~~gpPCQ~fS~ 86 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESC--GAECVYSNEWDKYAQEVYEMNFGEKP--EGDITQVNEKTIPDHDILCAGFPCQAFSI 86 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHT--TCEEEEEECCCHHHHHHHHHHHSCCC--BSCGGGSCGGGSCCCSEEEEECCCTTTCT
T ss_pred CCcEEEECCCcCHHHHHHHHC--CCeEEEEEeCCHHHHHHHHHHcCCCC--cCCHHHcCHhhCCCCCEEEECCCCCCcch
Confidence 468999999999999999887 454 66788843 4433221 11111 577743 245699999653322221
Q ss_pred --------chHHHHHHH---HHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHH
Q 018205 267 --------DEDCLKILK---RCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLF 335 (359)
Q Consensus 267 --------~~~~~~~L~---~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll 335 (359)
|+. -.++. ++.+.++| .+++.|.+..-... .+| ...+.+.+.|
T Consensus 87 ag~~~g~~d~r-~~L~~~~~r~i~~~~P-----~~~~~ENV~gl~~~------------------~~~--~~~~~i~~~l 140 (327)
T 2c7p_A 87 SGKQKGFEDSR-GTLFFDIARIVREKKP-----KVVFMENVKNFASH------------------DNG--NTLEVVKNTM 140 (327)
T ss_dssp TSCCCGGGSTT-SCHHHHHHHHHHHHCC-----SEEEEEEEGGGGTG------------------GGG--HHHHHHHHHH
T ss_pred hcccCCCcchh-hHHHHHHHHHHHhccC-----cEEEEeCcHHHHhc------------------ccc--HHHHHHHHHH
Confidence 211 11222 23344567 57888876532110 011 2356788888
Q ss_pred HHcCCceeEE
Q 018205 336 LDAGFSHFKI 345 (359)
Q Consensus 336 ~~aGf~~~~~ 345 (359)
++.||.+...
T Consensus 141 ~~~GY~v~~~ 150 (327)
T 2c7p_A 141 NELDYSFHAK 150 (327)
T ss_dssp HHTTBCCEEE
T ss_pred HhCCCEEEEE
Confidence 9999876443
No 481
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=82.25 E-value=15 Score=28.24 Aligned_cols=84 Identities=17% Similarity=0.148 Sum_probs=47.6
Q ss_pred CCCeEEEeCCCc-chHHHHHHHHCCCCeEEEeec-ccccccCCCCCCceEeeCCCCC-----C--CCCccEEEEcchhcc
Q 018205 194 GLGSLVDVGGGT-GSFARIISEAFPGIKCTVLDL-PHVVPKVPDTDNLKFIAGDMFQ-----S--IPPADAFFFKAIFHA 264 (359)
Q Consensus 194 ~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-----~--~p~~D~i~~~~vl~~ 264 (359)
...+|+=+|+|. |......+... +.+++++|. ++.++.++....+.++.+|..+ . ..++|+|+..-
T Consensus 18 ~~~~v~IiG~G~iG~~la~~L~~~-g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~---- 92 (155)
T 2g1u_A 18 KSKYIVIFGCGRLGSLIANLASSS-GHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFT---- 92 (155)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECS----
T ss_pred CCCcEEEECCCHHHHHHHHHHHhC-CCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEe----
Confidence 467899999865 44333333333 568999998 4456655523345667677532 1 23589888643
Q ss_pred CCchHHHHHHHHHHHhccc
Q 018205 265 FVDEDCLKILKRCREAIAS 283 (359)
Q Consensus 265 ~~~~~~~~~L~~~~~~L~p 283 (359)
+++.....+..+.+.+.+
T Consensus 93 -~~~~~~~~~~~~~~~~~~ 110 (155)
T 2g1u_A 93 -NDDSTNFFISMNARYMFN 110 (155)
T ss_dssp -SCHHHHHHHHHHHHHTSC
T ss_pred -CCcHHHHHHHHHHHHHCC
Confidence 223333344444444444
No 482
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=81.88 E-value=0.75 Score=33.38 Aligned_cols=41 Identities=12% Similarity=0.077 Sum_probs=34.3
Q ss_pred HHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHH
Q 018205 33 KCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLV 78 (359)
Q Consensus 33 ~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~ 78 (359)
..+.++||+..|.. +++|..|||+.+|+ ....+.|+=|+|.
T Consensus 43 ~l~~R~~l~~~L~~--ge~TQREIA~~lGi---S~stISRi~r~L~ 83 (101)
T 1jhg_A 43 ALGTRVRIIEELLR--GEMSQRELKNELGA---GIATITRGSNSLK 83 (101)
T ss_dssp HHHHHHHHHHHHHH--CCSCHHHHHHHHCC---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCcCHHHHHHHHCC---ChhhhhHHHHHHH
Confidence 45677999999987 78999999999999 6788888766664
No 483
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=81.87 E-value=0.4 Score=36.10 Aligned_cols=49 Identities=10% Similarity=0.222 Sum_probs=37.3
Q ss_pred cCcchhcccCCCCCCHHHHHHhcCCC-CCCcccHHHHHHHHHccCceeeec
Q 018205 38 LDIPEVIHKHGRPITLPQLVSALEIN-PTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~ela~~~~~~-~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
..|...|.+. ++.|..||++.++.. +-+...+.++|+-|+..|+|.+..
T Consensus 13 ~~vL~~L~~~-~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~~ 62 (126)
T 1sd4_A 13 WDVMNIIWDK-KSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYK 62 (126)
T ss_dssp HHHHHHHHHS-SSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHhc-CCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEEe
Confidence 3344555543 689999999999741 004688999999999999999875
No 484
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=81.61 E-value=1.3 Score=32.74 Aligned_cols=36 Identities=11% Similarity=0.185 Sum_probs=32.1
Q ss_pred CCC-CHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 49 RPI-TLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 49 ~~~-t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
..+ |..+||+.+|+ +...+++.|+.|...|+++...
T Consensus 31 ~~lPs~~~La~~~~v---Sr~tvr~al~~L~~~Gli~~~~ 67 (113)
T 3tqn_A 31 EMIPSIRKISTEYQI---NPLTVSKAYQSLLDDNVIEKRR 67 (113)
T ss_dssp CEECCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET
T ss_pred CcCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEec
Confidence 455 89999999999 6788999999999999998875
No 485
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=81.47 E-value=3.8 Score=31.26 Aligned_cols=88 Identities=16% Similarity=0.134 Sum_probs=50.3
Q ss_pred CCeEEEeCCCc-chHHHHHHHHCCCCeEEEeec-ccccccCCCCCCceEeeCCCCCC-------CCCccEEEEcchhccC
Q 018205 195 LGSLVDVGGGT-GSFARIISEAFPGIKCTVLDL-PHVVPKVPDTDNLKFIAGDMFQS-------IPPADAFFFKAIFHAF 265 (359)
Q Consensus 195 ~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~-------~p~~D~i~~~~vl~~~ 265 (359)
..+|+=+|||. |......+... +.+++++|. ++.++.++. ..+.++.+|..++ ...+|++++.--
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~-g~~v~vid~~~~~~~~~~~-~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~---- 80 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLAS-DIPLVVIETSRTRVDELRE-RGVRAVLGNAANEEIMQLAHLECAKWLILTIP---- 80 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHT-TCCEEEEESCHHHHHHHHH-TTCEEEESCTTSHHHHHHTTGGGCSEEEECCS----
T ss_pred CCCEEEECcCHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHH-cCCCEEECCCCCHHHHHhcCcccCCEEEEECC----
Confidence 46899999875 44333333332 678999999 445554443 4678888988542 235888876321
Q ss_pred CchHHHHHHHHHHHhcccCCCCcEEEE
Q 018205 266 VDEDCLKILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 266 ~~~~~~~~L~~~~~~L~p~~~gG~lli 292 (359)
.+.+...+.. ..+.+.| +..++.
T Consensus 81 ~~~~n~~~~~-~a~~~~~---~~~iia 103 (140)
T 3fwz_A 81 NGYEAGEIVA-SARAKNP---DIEIIA 103 (140)
T ss_dssp CHHHHHHHHH-HHHHHCS---SSEEEE
T ss_pred ChHHHHHHHH-HHHHHCC---CCeEEE
Confidence 1223333334 3444566 555544
No 486
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=81.41 E-value=0.83 Score=36.97 Aligned_cols=65 Identities=11% Similarity=0.205 Sum_probs=45.8
Q ss_pred hcCcchhcccCCCCCCHHHHHHhc--------CCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccccc
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSAL--------EINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSK 106 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~--------~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~ 106 (359)
++-|+..|.+ +|++.-||++.+ ++ +...+.+.|+.|+..|+++..............|++|+.++
T Consensus 4 ~~~iL~lL~~--~~~~gyel~~~l~~~~~~~~~~---s~~~ly~~L~~Le~~GlI~~~~~~~~~~~~r~~Y~lT~~G~ 76 (179)
T 1yg2_A 4 PHVILTVLST--RDATGYDITKEFSASIGYFWKA---SHQQVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSITQAGR 76 (179)
T ss_dssp HHHHHHHHHH--CCBCHHHHHHHHTTGGGGTCCC---CHHHHHHHHHHHHHTTSEEECCC---------CEEECHHHH
T ss_pred HHHHHHHHhc--CCCCHHHHHHHHHHHhCCccCC---CcCcHHHHHHHHHHCCCeEEEeecCCCCCCceEEEeChHHH
Confidence 4446667776 799999999998 45 67899999999999999987532100000123599999886
No 487
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.72 E-value=0.67 Score=33.24 Aligned_cols=47 Identities=11% Similarity=0.138 Sum_probs=38.4
Q ss_pred cCcchhcccCC-CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 38 LDIPEVIHKHG-RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 38 lglf~~L~~~~-~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
.-|+..+.++| .+++..+|..++++ ++..+.+.|+.|+..+|+....
T Consensus 40 ~lVy~~I~~aGn~GIw~kdL~~~tnL---~~~~vtkiLK~LE~k~lIK~Vk 87 (95)
T 2yu3_A 40 KLVYQIIEDAGNKGIWSRDVRYKSNL---PLTEINKILKNLESKKLIKAVK 87 (95)
T ss_dssp HHHHHHHHHHTTSCEEHHHHHHHHTC---CHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHhCC---CHHHHHHHHHHHHhCCCEEEec
Confidence 33455555432 57999999999999 6899999999999999999875
No 488
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=80.70 E-value=4.2 Score=30.51 Aligned_cols=87 Identities=16% Similarity=0.196 Sum_probs=47.6
Q ss_pred CCeEEEeCCCcchHHHHHHHHC--CCCeEEEeecc-cccccCCCCCCceEeeCCCCC-------CCCCccEEEEcchhcc
Q 018205 195 LGSLVDVGGGTGSFARIISEAF--PGIKCTVLDLP-HVVPKVPDTDNLKFIAGDMFQ-------SIPPADAFFFKAIFHA 264 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~~-~~~~~a~~~~~v~~~~~d~~~-------~~p~~D~i~~~~vl~~ 264 (359)
.++|+=+|+|. .+..+++.. .+.+++++|.. +.++.......+.++.+|..+ ....+|+|+..-
T Consensus 4 ~m~i~IiG~G~--iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~---- 77 (140)
T 1lss_A 4 GMYIIIAGIGR--VGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVT---- 77 (140)
T ss_dssp -CEEEEECCSH--HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECC----
T ss_pred CCEEEEECCCH--HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEee----
Confidence 46788888854 333333322 25689999984 343333222245667777632 134589888752
Q ss_pred CCchHHHHHHHHHHHhcccCCCCcEEEE
Q 018205 265 FVDEDCLKILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 265 ~~~~~~~~~L~~~~~~L~p~~~gG~lli 292 (359)
+++.....+..+.+.+.+ +.+++
T Consensus 78 -~~~~~~~~~~~~~~~~~~----~~ii~ 100 (140)
T 1lss_A 78 -GKEEVNLMSSLLAKSYGI----NKTIA 100 (140)
T ss_dssp -SCHHHHHHHHHHHHHTTC----CCEEE
T ss_pred -CCchHHHHHHHHHHHcCC----CEEEE
Confidence 223333345555556776 45554
No 489
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=80.59 E-value=2.2 Score=32.47 Aligned_cols=37 Identities=16% Similarity=0.223 Sum_probs=32.7
Q ss_pred CCCC-CHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 48 GRPI-TLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 48 ~~~~-t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
|..+ |..+||+.+|+ +...+++-|+.|...|+++...
T Consensus 25 G~~LPse~~La~~~gv---Sr~tVr~Al~~L~~~Gli~~~~ 62 (129)
T 2ek5_A 25 DQRVPSTNELAAFHRI---NPATARNGLTLLVEAGILYKKR 62 (129)
T ss_dssp TSCBCCHHHHHHHTTC---CHHHHHHHHHHHHTTTSEEEET
T ss_pred CCcCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEEec
Confidence 3466 89999999999 6788999999999999998875
No 490
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=79.90 E-value=0.23 Score=36.65 Aligned_cols=67 Identities=22% Similarity=0.330 Sum_probs=44.8
Q ss_pred HhcCcchhcccCCCCCCHHHHHHhc----CCCCCCcccHHHHHHHHHccCceeeecccccccC-ccceEeccccccccc
Q 018205 36 VELDIPEVIHKHGRPITLPQLVSAL----EINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQ-EEEAYALTLTSKLFL 109 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~ela~~~----~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~-~~~~~~~t~~~~~l~ 109 (359)
.++-|+..|.+ +|.+--+|++.+ ++ +...+.+.|+.|+..|+|+...... .+ ..-.|++|+.++...
T Consensus 10 l~~~IL~~L~~--~~~~gyel~~~l~~~~~i---~~~tly~~L~~Le~~GlI~~~~~~~--~~r~r~~y~LT~~G~~~l 81 (108)
T 3l7w_A 10 IEYLILAIVSK--HDSYGYDISQTIKLIASI---KESTLYPILKKLEKAGYLSTYTQEH--QGRRRKYYHLTDSGEKHL 81 (108)
T ss_dssp HHHHHHHHHHH--SCEEHHHHHHHHTTTCCC---CHHHHHHHHHHHHHTTSEEEEEEEE--TTEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc--CCCcHHHHHHHHHHHhCC---CcChHHHHHHHHHHCCCeEEEeecC--CCCcceEEEECHHHHHHH
Confidence 34445556655 677777777764 77 6789999999999999998763110 00 012388888876443
No 491
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=79.42 E-value=1.4 Score=40.63 Aligned_cols=51 Identities=10% Similarity=0.165 Sum_probs=42.0
Q ss_pred HHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 33 KCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 33 ~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
+..-+..|++.|... +++|..|||+.+|+ ....+.++++.|.+.|++.+.+
T Consensus 14 r~~n~~~il~~l~~~-~~~sr~~la~~~~l---s~~tv~~~v~~L~~~g~i~~~~ 64 (406)
T 1z6r_A 14 KQTNAGAVYRLIDQL-GPVSRIDLSRLAQL---APASITKIVHEMLEAHLVQELE 64 (406)
T ss_dssp HHHHHHHHHHHHHSS-CSCCHHHHHHHTTC---CHHHHHHHHHHHHHHTSEEEC-
T ss_pred HHhHHHHHHHHHHHc-CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCcEEeec
Confidence 344445577788764 79999999999999 6899999999999999998854
No 492
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=78.99 E-value=0.4 Score=43.44 Aligned_cols=61 Identities=16% Similarity=0.134 Sum_probs=0.0
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccccccccc
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFLK 110 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~~l~~ 110 (359)
+..|+..|... +++|..|||+.+|+ ++..++|.|+.|...|+++... ....+|+.++.+..
T Consensus 22 ~~~iL~~l~~~-~~~t~~eLa~~l~v---s~~Tv~r~l~~Le~~Glv~~~~---------~gi~LT~~G~~~~~ 82 (345)
T 2o0m_A 22 RFQILRNIYWM-QPIGRRSLSETMGI---TERVLRTETDVLKQLNLIEPSK---------SGMTLTERGLEVYQ 82 (345)
T ss_dssp --------------------------------------------------------------------------
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe---------cceEEcHHHHHHHH
Confidence 45667777664 69999999999999 6899999999999999998552 45778887765553
No 493
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=78.87 E-value=1.4 Score=36.22 Aligned_cols=48 Identities=25% Similarity=0.342 Sum_probs=40.9
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccccccc
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLF 108 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~~l 108 (359)
++++..+||+.+|+ .++.++..++.|...|+++... +...+|+.++.+
T Consensus 29 ~~V~~~~LA~~Lgv---S~~SV~~~lkkL~e~GLV~~~~---------~Gv~LTe~G~~~ 76 (200)
T 2p8t_A 29 EPLGRKQISERLEL---GEGSVRTLLRKLSHLDIIRSKQ---------RGHFLTLKGKEI 76 (200)
T ss_dssp SCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEC-----------CEEECHHHHHH
T ss_pred CCccHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEeC---------CCeEECHHHHHH
Confidence 58999999999999 6899999999999999999873 678888877643
No 494
>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*
Probab=78.83 E-value=2.1 Score=39.70 Aligned_cols=61 Identities=20% Similarity=0.404 Sum_probs=39.0
Q ss_pred cCccHHHHHHHHHhhcccchHHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCC-----CCeEEEeeccccc
Q 018205 162 KNPDFNSIYNQAMASDSQLANLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFP-----GIKCTVLDLPHVV 230 (359)
Q Consensus 162 ~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-----~~~~~~~D~~~~~ 230 (359)
+.|+....|.+.+... +++.+. ..+..+|+|+|+|+|.++..+++... ..+++.+|+|..+
T Consensus 113 TAPeiS~~FGe~la~~------~~~~~~--~~g~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~L 178 (432)
T 4f3n_A 113 TAPELSPLFAQTLARP------VAQALD--ASGTRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGEL 178 (432)
T ss_dssp SCGGGHHHHHHHHHHH------HHHHHH--HHTCCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSS
T ss_pred CchhhhHHHHHHHHHH------HHHHHH--hcCCCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHH
Confidence 4567767676655432 222222 11257999999999998887765431 2379999996644
No 495
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=78.65 E-value=3.8 Score=35.66 Aligned_cols=100 Identities=16% Similarity=0.120 Sum_probs=66.4
Q ss_pred CCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-cccccc----CCCCCCceEeeCCCCCC----CC---CccEEEEcchh
Q 018205 195 LGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPK----VPDTDNLKFIAGDMFQS----IP---PADAFFFKAIF 262 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~----a~~~~~v~~~~~d~~~~----~p---~~D~i~~~~vl 262 (359)
...+||+=+|+|.++..+++. .-+++.+|. +..++. .+..++++++..|.+.. .| .||+|++-=-.
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS~--~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPY 169 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLRS--QDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSY 169 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSCT--TSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCC
T ss_pred CCCceeEeCCcHHHHHHHcCC--CCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCC
Confidence 467899999999999999883 568999999 444432 23357899999997431 12 49999974333
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 018205 263 HAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINE 299 (359)
Q Consensus 263 ~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~ 299 (359)
.. ..+..++++.+.+..+. .++|.++|-=++...
T Consensus 170 e~--k~~~~~vl~~L~~~~~r-~~~Gi~v~WYPi~~~ 203 (283)
T 2oo3_A 170 ER--KEEYKEIPYAIKNAYSK-FSTGLYCVWYPVVNK 203 (283)
T ss_dssp CS--TTHHHHHHHHHHHHHHH-CTTSEEEEEEEESSH
T ss_pred CC--CcHHHHHHHHHHHhCcc-CCCeEEEEEEeccch
Confidence 21 23455667666664432 127888886666543
No 496
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=78.60 E-value=1.6 Score=38.92 Aligned_cols=55 Identities=16% Similarity=0.135 Sum_probs=42.9
Q ss_pred CcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccc
Q 018205 39 DIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLT 104 (359)
Q Consensus 39 glf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~ 104 (359)
.|+..|.+ ++++|.+|||+.+++ .+..++|-++.|...|++..... +..|++.+.
T Consensus 9 ~Il~~L~~-~~~~s~~eLa~~l~v---S~~ti~r~l~~L~~~G~~i~~~~-------g~GY~l~~~ 63 (321)
T 1bia_A 9 KLIALLAN-GEFHSGEQLGETLGM---SRAAINKHIQTLRDWGVDVFTVP-------GKGYSLPEP 63 (321)
T ss_dssp HHHHHHTT-SSCBCHHHHHHHHTS---CHHHHHHHHHHHHHTTCCCEEET-------TTEEECSSC
T ss_pred HHHHHHHc-CCCcCHHHHHHHHCC---CHHHHHHHHHHHHhCCCcEEEec-------CCCcEEeec
Confidence 35566654 368999999999999 68999999999999999864431 347887653
No 497
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=78.41 E-value=9.3 Score=32.69 Aligned_cols=95 Identities=14% Similarity=0.065 Sum_probs=56.8
Q ss_pred CeEEEeCCCcchHHHHHHHHC--CCCeEEEeeccc-ccccCCCCCCceEeeCCCCC-CCCCccEEEEcchhccCCchHHH
Q 018205 196 GSLVDVGGGTGSFARIISEAF--PGIKCTVLDLPH-VVPKVPDTDNLKFIAGDMFQ-SIPPADAFFFKAIFHAFVDEDCL 271 (359)
Q Consensus 196 ~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~~~-~~~~a~~~~~v~~~~~d~~~-~~p~~D~i~~~~vl~~~~~~~~~ 271 (359)
++||=.|+ |..+..+++.. .+.++++++.+. -.... ...+++++.+|+.+ ...++|+|+..-......++...
T Consensus 6 ~~ilVtGa--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~~D~~d~~~~~~d~vi~~a~~~~~~~~~~~ 82 (286)
T 3ius_A 6 GTLLSFGH--GYTARVLSRALAPQGWRIIGTSRNPDQMEAI-RASGAEPLLWPGEEPSLDGVTHLLISTAPDSGGDPVLA 82 (286)
T ss_dssp CEEEEETC--CHHHHHHHHHHGGGTCEEEEEESCGGGHHHH-HHTTEEEEESSSSCCCCTTCCEEEECCCCBTTBCHHHH
T ss_pred CcEEEECC--cHHHHHHHHHHHHCCCEEEEEEcChhhhhhH-hhCCCeEEEecccccccCCCCEEEECCCccccccHHHH
Confidence 68999994 87777776654 256899988743 21111 12568999999854 24568988876554433334334
Q ss_pred HHHHHHHHhcccCCCCcEEEEEeee
Q 018205 272 KILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 272 ~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
.+++.+.+.-.. -.+++.+...
T Consensus 83 ~l~~a~~~~~~~---~~~~v~~Ss~ 104 (286)
T 3ius_A 83 ALGDQIAARAAQ---FRWVGYLSTT 104 (286)
T ss_dssp HHHHHHHHTGGG---CSEEEEEEEG
T ss_pred HHHHHHHhhcCC---ceEEEEeecc
Confidence 455555543122 2566666543
No 498
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=78.17 E-value=3.3 Score=40.93 Aligned_cols=33 Identities=21% Similarity=0.207 Sum_probs=23.5
Q ss_pred CCCeEEEeCCCcchHHHHHHHH-------CCC-----CeEEEeec
Q 018205 194 GLGSLVDVGGGTGSFARIISEA-------FPG-----IKCTVLDL 226 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~-------~p~-----~~~~~~D~ 226 (359)
+.-+|+|+|-|+|.......+. +|. ++++.+|.
T Consensus 66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~ 110 (676)
T 3ps9_A 66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEK 110 (676)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEES
T ss_pred CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeC
Confidence 3469999999999866555443 232 46888886
No 499
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Probab=77.53 E-value=1.4 Score=40.15 Aligned_cols=52 Identities=13% Similarity=0.171 Sum_probs=43.6
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEec
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYAL 101 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~ 101 (359)
+..|++.|.. +|.++++|++++|+ +...+...|-.|+-.|++.... ++.|++
T Consensus 330 ~~~vl~~l~~--~~~~~D~l~~~~gl---~~~~v~~~L~~LEl~G~v~~~~--------Gg~~~~ 381 (382)
T 3maj_A 330 RTRILALLGP--SPVGIDDLIRLSGI---SPAVVRTILLELELAGRLERHG--------GSLVSL 381 (382)
T ss_dssp HHHHHHHCCS--SCEEHHHHHHHHCC---CHHHHHHHHHHHHHTTCCEECT--------TSEEEC
T ss_pred HHHHHHhhCC--CCCCHHHHHHHHCc---CHHHHHHHHHHHHhCCcEEeCC--------CceEec
Confidence 3457888875 79999999999999 6788888999999999999885 567765
No 500
>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A
Probab=77.29 E-value=4.2 Score=35.28 Aligned_cols=89 Identities=13% Similarity=0.079 Sum_probs=51.7
Q ss_pred CCeEEEeCCCc--chHHHHHHHHCCCCeEEEeecc-cccccCCCCCCceEeeCCCCCCCCCccEEEEcchhccCCchHHH
Q 018205 195 LGSLVDVGGGT--GSFARIISEAFPGIKCTVLDLP-HVVPKVPDTDNLKFIAGDMFQSIPPADAFFFKAIFHAFVDEDCL 271 (359)
Q Consensus 195 ~~~vlDvG~G~--G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~v~~~~~d~~~~~p~~D~i~~~~vl~~~~~~~~~ 271 (359)
..+|.=||+|. +.++..+++..++.++++.|.. +..+.+.+.........|..+....+|+|++.- +.....
T Consensus 6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVilav-----p~~~~~ 80 (290)
T 3b1f_A 6 EKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILAV-----PIKKTI 80 (290)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEECS-----CHHHHH
T ss_pred cceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEcC-----CHHHHH
Confidence 35788999886 3355566666556789999984 333332211111122234422344689988743 434456
Q ss_pred HHHHHHHHh-cccCCCCcEEEE
Q 018205 272 KILKRCREA-IASRGDRGKVII 292 (359)
Q Consensus 272 ~~L~~~~~~-L~p~~~gG~lli 292 (359)
.+++++... +++ |.+++
T Consensus 81 ~v~~~l~~~~l~~----~~ivi 98 (290)
T 3b1f_A 81 DFIKILADLDLKE----DVIIT 98 (290)
T ss_dssp HHHHHHHTSCCCT----TCEEE
T ss_pred HHHHHHHhcCCCC----CCEEE
Confidence 688888777 877 45554
Done!