BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018206
         (359 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3K5W|A Chain A, Crystal Structure Of A Carbohydrate Kinase (Yjef
           Family)from Helicobacter Pylori
          Length = 475

 Score = 34.7 bits (78), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 56/134 (41%), Gaps = 14/134 (10%)

Query: 44  VEVDTRLDNQSEDTSHGSQGPFCKYEQEASKPFDKIQRRLAQNREAARKSRLRKKAYVQQ 103
           +E D  +D        G   PF  +E  + K   KI   +    ++  K R+ K+A+   
Sbjct: 114 LECDVLIDCVIGSHFKGKLEPFLNFESLSQKARFKIACDIPSGIDS--KGRVDKRAFKAD 171

Query: 104 LETSR--LKLVQLEQELDRARQQGLYVGSGVEGVHMGFSGTVNSAFEMEYGHWLEEQSRQ 161
           L  S   +K   L    DRA+    YVG     + +G  G  N  +E+    +L E+S  
Sbjct: 172 LTISXGAIKSCLLS---DRAKD---YVGE----LKVGHLGVFNPIYEIPTDTFLLEKSDL 221

Query: 162 ICELRNALQAHIGD 175
              LR+   AH GD
Sbjct: 222 KLPLRDKKNAHKGD 235


>pdb|1DH3|A Chain A, Crystal Structure Of A Creb Bzip-Cre Complex Reveals The
           Basis For Creb Faimly Selective Dimerization And Dna
           Binding
 pdb|1DH3|C Chain C, Crystal Structure Of A Creb Bzip-Cre Complex Reveals The
           Basis For Creb Faimly Selective Dimerization And Dna
           Binding
          Length = 55

 Score = 33.1 bits (74), Expect = 0.27,   Method: Composition-based stats.
 Identities = 17/28 (60%), Positives = 22/28 (78%)

Query: 78  KIQRRLAQNREAARKSRLRKKAYVQQLE 105
           K + RL +NREAAR+SR +KK YV+ LE
Sbjct: 1   KREVRLMKNREAARESRRKKKEYVKSLE 28


>pdb|2PER|A Chain A, Crystal Structure Of Human Chloride Intracellular Channel
           Protein 2
          Length = 267

 Score = 28.5 bits (62), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 10/77 (12%)

Query: 23  MSTWVENFKSNGNPNTSAPIIVEVD-TRLDNQSEDTSHGSQGPFCKYEQEASKPFDKIQR 81
           M  W++  K N         +  VD TR   + +D + G+  PF  Y +E    F KI+ 
Sbjct: 58  MILWLKGVKFN---------VTTVDMTRKPEELKDLAPGTNPPFLVYNKELKTDFIKIEE 108

Query: 82  RLAQNREAARKSRLRKK 98
            L Q     R   L  K
Sbjct: 109 FLEQTLAPPRYPHLSPK 125


>pdb|2R4V|A Chain A, Structure Of Human Clic2, Crystal Form A
 pdb|2R5G|A Chain A, Structure Of Human Clic2, Crystal Form B
          Length = 247

 Score = 28.1 bits (61), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 10/77 (12%)

Query: 23  MSTWVENFKSNGNPNTSAPIIVEVD-TRLDNQSEDTSHGSQGPFCKYEQEASKPFDKIQR 81
           M  W++  K N         +  VD TR   + +D + G+  PF  Y +E    F KI+ 
Sbjct: 38  MILWLKGVKFN---------VTTVDMTRKPEELKDLAPGTNPPFLVYNKELKTDFIKIEE 88

Query: 82  RLAQNREAARKSRLRKK 98
            L Q     R   L  K
Sbjct: 89  FLEQTLAPPRYPHLSPK 105


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.131    0.380 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,860,194
Number of Sequences: 62578
Number of extensions: 374161
Number of successful extensions: 984
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 976
Number of HSP's gapped (non-prelim): 13
length of query: 359
length of database: 14,973,337
effective HSP length: 100
effective length of query: 259
effective length of database: 8,715,537
effective search space: 2257324083
effective search space used: 2257324083
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)