Query 018206
Match_columns 359
No_of_seqs 189 out of 243
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 07:02:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018206.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018206hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14144 DOG1: Seed dormancy c 100.0 4.7E-34 1E-38 229.2 7.5 79 160-238 1-80 (80)
2 smart00338 BRLZ basic region l 98.7 4.5E-08 9.6E-13 75.1 6.9 45 75-122 2-46 (65)
3 PF00170 bZIP_1: bZIP transcri 98.6 8.4E-08 1.8E-12 73.4 6.1 44 76-122 3-46 (64)
4 PF07716 bZIP_2: Basic region 98.6 2E-07 4.2E-12 69.5 7.0 47 74-124 1-47 (54)
5 KOG3584 cAMP response element 97.5 0.00035 7.6E-09 68.6 7.8 38 75-115 288-325 (348)
6 COG3678 CpxP P pilus assembly/ 96.6 0.036 7.8E-07 50.4 11.7 107 217-339 36-145 (160)
7 PF13801 Metal_resist: Heavy-m 96.6 0.046 1E-06 44.3 11.4 84 241-331 41-124 (125)
8 KOG4343 bZIP transcription fac 96.6 0.0038 8.2E-08 65.8 6.1 47 74-123 274-323 (655)
9 PRK12750 cpxP periplasmic repr 96.2 0.31 6.6E-06 44.6 15.5 94 241-341 52-153 (170)
10 PF03131 bZIP_Maf: bZIP Maf tr 96.1 0.0047 1E-07 50.7 3.0 34 77-110 29-62 (92)
11 KOG0709 CREB/ATF family transc 94.3 0.04 8.7E-07 57.4 3.8 43 77-119 250-292 (472)
12 PRK10455 periplasmic protein; 94.3 0.46 9.9E-06 43.2 10.2 102 218-335 35-140 (161)
13 PRK12751 cpxP periplasmic stre 92.5 4.3 9.3E-05 37.1 13.3 100 241-350 56-155 (162)
14 PRK10363 cpxP periplasmic repr 92.4 2.2 4.8E-05 39.3 11.3 99 241-352 50-151 (166)
15 KOG0837 Transcriptional activa 91.9 0.24 5.2E-06 48.5 4.8 29 78-106 206-234 (279)
16 PF07813 LTXXQ: LTXXQ motif fa 91.3 1.3 2.9E-05 35.1 7.9 83 237-333 11-96 (100)
17 KOG4005 Transcription factor X 89.6 0.82 1.8E-05 44.5 6.1 44 75-121 66-109 (292)
18 KOG3119 Basic region leucine z 80.2 4.4 9.6E-05 39.5 6.3 46 74-122 190-235 (269)
19 KOG4571 Activating transcripti 72.5 13 0.00028 37.2 7.1 52 72-123 220-283 (294)
20 KOG4196 bZIP transcription fac 42.4 83 0.0018 28.2 6.2 34 76-109 51-84 (135)
21 PRK11702 hypothetical protein; 39.5 14 0.00031 31.9 1.0 13 91-103 5-17 (108)
22 PF07889 DUF1664: Protein of u 38.2 1.2E+02 0.0027 26.7 6.6 57 219-275 21-77 (126)
23 PF13628 DUF4142: Domain of un 37.0 2.7E+02 0.0058 23.8 10.0 97 94-193 30-133 (139)
24 PF11459 DUF2893: Protein of u 35.6 82 0.0018 25.2 4.6 41 301-341 21-61 (69)
25 PF11471 Sugarporin_N: Maltopo 35.4 37 0.00081 26.2 2.6 18 103-123 36-53 (60)
26 KOG2391 Vacuolar sorting prote 34.0 2.7E+02 0.0058 28.8 9.0 26 250-275 244-269 (365)
27 cd00223 TOPRIM_TopoIIB_SPO TOP 32.0 61 0.0013 28.7 3.8 38 220-258 90-127 (160)
28 PF06013 WXG100: Proteins of 1 31.3 2.2E+02 0.0047 21.1 9.3 51 99-166 18-68 (86)
29 PF15219 TEX12: Testis-express 31.0 3E+02 0.0065 23.5 7.4 60 262-321 35-94 (100)
30 KOG3759 Uncharacterized RUN do 30.1 2.5E+02 0.0054 30.4 8.3 83 92-200 142-229 (621)
31 TIGR02302 aProt_lowcomp conser 28.2 9.8E+02 0.021 27.7 15.7 45 159-203 506-550 (851)
32 PF10552 ORF6C: ORF6C domain; 27.6 3.8E+02 0.0082 22.7 8.7 43 180-234 69-113 (116)
33 KOG3725 SH3 domain protein SH3 27.1 5.5E+02 0.012 26.0 9.6 25 177-201 236-260 (375)
34 PF06698 DUF1192: Protein of u 25.9 84 0.0018 24.4 3.1 20 101-123 23-42 (59)
35 PF02181 FH2: Formin Homology 25.2 6.8E+02 0.015 24.8 10.9 82 261-343 283-368 (370)
36 PF13586 DDE_Tnp_1_2: Transpos 24.9 32 0.0007 27.3 0.7 18 211-228 45-62 (88)
37 PF09036 Bcr-Abl_Oligo: Bcr-Ab 24.7 79 0.0017 25.8 2.9 27 102-128 33-59 (79)
38 PF09789 DUF2353: Uncharacteri 24.5 85 0.0018 31.9 3.7 47 74-120 99-151 (319)
39 PF14362 DUF4407: Domain of un 24.3 3.7E+02 0.008 26.1 8.1 15 336-350 240-254 (301)
40 PF06210 DUF1003: Protein of u 24.1 2.3E+02 0.005 24.2 5.8 38 82-120 54-91 (108)
41 PF05837 CENP-H: Centromere pr 24.1 2.4E+02 0.0053 23.7 5.9 29 105-133 54-91 (106)
42 PF07047 OPA3: Optic atrophy 3 23.1 2.3E+02 0.005 24.8 5.8 39 85-123 95-133 (134)
43 PHA03395 p10 fibrous body prot 23.1 4.5E+02 0.0098 22.0 7.2 60 256-327 8-67 (87)
44 COG3165 Uncharacterized protei 21.8 4.3E+02 0.0093 25.4 7.6 49 257-317 139-188 (204)
45 PF00589 Phage_integrase: Phag 21.5 39 0.00084 28.2 0.6 19 220-238 29-47 (173)
46 PF07445 priB_priC: Primosomal 21.4 3.8E+02 0.0082 24.5 7.0 45 152-197 43-87 (173)
47 PF13334 DUF4094: Domain of un 21.0 97 0.0021 25.9 2.8 22 100-124 74-95 (95)
48 PF13990 YjcZ: YjcZ-like prote 20.9 8.5E+02 0.018 24.3 10.8 30 238-267 90-120 (270)
49 PF11471 Sugarporin_N: Maltopo 20.5 1.2E+02 0.0027 23.3 3.1 17 104-123 30-46 (60)
50 cd07637 BAR_ACAP3 The Bin/Amph 20.5 2.7E+02 0.006 26.1 6.1 68 100-170 3-89 (200)
No 1
>PF14144 DOG1: Seed dormancy control
Probab=100.00 E-value=4.7e-34 Score=229.21 Aligned_cols=79 Identities=62% Similarity=0.964 Sum_probs=76.5
Q ss_pred HHHHHHHHHHhcCC-CchHHHHHHHHHHhhHHHHHHHHHHhhhcCcchhccCCCCChhhhHHHhhcCCCchhhHHhhccc
Q 018206 160 RQICELRNALQAHI-GDVELRILVDAGMSHYFELFRMKTTAAKADVFYVMSGMWKTPAERFFFWIGGFRPSELLKVLVPQ 238 (359)
Q Consensus 160 r~l~eLR~AL~s~~-~d~eL~~LVd~~l~HY~e~f~~Ks~aA~~DVf~llsg~W~tp~Er~FLWiGGfRPS~llkLL~~~ 238 (359)
|++.|||+|++++. +|.+|+.|||++|+||++||++|+.+|++|||++|+|+|+||+||||+||||||||++||||+++
T Consensus 1 ~~l~eLr~al~~~~~~~~~L~~lV~~~~~Hy~~y~~~K~~aa~~DV~~~~s~~W~sp~Er~flWiGG~RPS~~~~ll~s~ 80 (80)
T PF14144_consen 1 RQLNELRAALQSHADSDDELRSLVDKVMSHYDEYYRAKSAAAKADVFHLLSPPWKSPLERCFLWIGGWRPSELFKLLYSQ 80 (80)
T ss_pred CcHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHhCCCCCCHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 57899999999998 89999999999999999999999999999999999999999999999999999999999999874
No 2
>smart00338 BRLZ basic region leucin zipper.
Probab=98.70 E-value=4.5e-08 Score=75.08 Aligned_cols=45 Identities=51% Similarity=0.626 Sum_probs=38.8
Q ss_pred cchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 018206 75 PFDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLEQELDRAR 122 (359)
Q Consensus 75 ~~~k~~rrlaqnreaArksrlrkkayvqqLE~sr~kl~qleqel~rar 122 (359)
.|+|-.||+.+||+||++||.|||.|++.||. ++..|+.|....+
T Consensus 2 ~~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~---~~~~L~~en~~L~ 46 (65)
T smart00338 2 EDEKRRRRRERNREAARRSRERKKAEIEELER---KVEQLEAENERLK 46 (65)
T ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 47899999999999999999999999999999 7777766666544
No 3
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=98.62 E-value=8.4e-08 Score=73.43 Aligned_cols=44 Identities=50% Similarity=0.698 Sum_probs=37.3
Q ss_pred chHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 018206 76 FDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLEQELDRAR 122 (359)
Q Consensus 76 ~~k~~rrlaqnreaArksrlrkkayvqqLE~sr~kl~qleqel~rar 122 (359)
..+-.+|+.+||+|||+||.|||+|+++||. ++..|+.|....+
T Consensus 3 ~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~---~~~~L~~en~~L~ 46 (64)
T PF00170_consen 3 EDKRERRRERNREAARRSRQRKKQYIEELEE---KVEELESENEELK 46 (64)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HHHHHHHHHHHHH
Confidence 3567899999999999999999999999999 8888877776554
No 4
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=98.58 E-value=2e-07 Score=69.46 Aligned_cols=47 Identities=47% Similarity=0.603 Sum_probs=39.9
Q ss_pred CcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 018206 74 KPFDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLEQELDRARQQ 124 (359)
Q Consensus 74 ~~~~k~~rrlaqnreaArksrlrkkayvqqLE~sr~kl~qleqel~rar~q 124 (359)
+.+++..+|. +||+||++||.|||.|++.||. ++.+|+.|....+++
T Consensus 1 ~~~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~---~~~~L~~en~~L~~~ 47 (54)
T PF07716_consen 1 KDEEKRERRE-RNREAARRSRQRKKQREEELEQ---EVQELEEENEQLRQE 47 (54)
T ss_dssp TCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 3577889999 9999999999999999999999 777777777665543
No 5
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=97.48 E-value=0.00035 Score=68.61 Aligned_cols=38 Identities=47% Similarity=0.627 Sum_probs=33.1
Q ss_pred cchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 018206 75 PFDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLE 115 (359)
Q Consensus 75 ~~~k~~rrlaqnreaArksrlrkkayvqqLE~sr~kl~qle 115 (359)
..-|-.=||-+||||||.+|-.||-||.-||+ |++=||
T Consensus 288 ~trKRevRLmKNREAARECRRKKKEYVKCLEN---RVAVLE 325 (348)
T KOG3584|consen 288 ATRKREVRLMKNREAARECRRKKKEYVKCLEN---RVAVLE 325 (348)
T ss_pred hhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHh---HHHHHh
Confidence 34567779999999999999999999999999 776665
No 6
>COG3678 CpxP P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein [Intracellular trafficking and secretion / Cell motility and secretio / Signal transduction mechanisms / Inorganic ion transport and metabolism]
Probab=96.58 E-value=0.036 Score=50.38 Aligned_cols=107 Identities=26% Similarity=0.275 Sum_probs=72.5
Q ss_pred hhHHHhhcCCCchh---hHHhhcccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCChhhH
Q 018206 217 ERFFFWIGGFRPSE---LLKVLVPQLEPLTEQQLIDVCNLRQSCQQAEDALSQGMDKLQQTLAETVAAGQLAEVGYNPRT 293 (359)
Q Consensus 217 Er~FLWiGGfRPS~---llkLL~~~LepLTeqQl~~I~~LqqstqqaEdaLsq~ma~LQqslad~~aa~~lg~g~~~~qm 293 (359)
... +|.|+|-|=- .++.| +||++|..+|..+...-+ .++.+-+..-...+-+.+.++..+.
T Consensus 36 ~~~-~~~g~~~~~~~~~~~~~l-----~lT~~Qrqqi~~i~~~~~---~a~~~~~~~~r~~l~~li~a~~~D~------- 99 (160)
T COG3678 36 ADA-HHGGQFGPRHQGGMFKGL-----DLTRAQRQQIRDLMQAQR---RAQREQLRSKRRALHELIAADQFDE------- 99 (160)
T ss_pred ccc-ccCCCCCccccccccccc-----cccHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcCCcCH-------
Confidence 444 5777766653 34444 899999999998877666 4444444444445555554333332
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 018206 294 GTAMDKLEALVSFVSQADHLRQETLQQMSRILTTRQAARGLLALGE 339 (359)
Q Consensus 294 ~~Am~kl~~Le~fl~qAD~LR~qTL~ql~~ILTp~QAA~fLlAl~e 339 (359)
+.|=...+.++....+.+.+|.++-.+|..||||.|.+.+=--.++
T Consensus 100 aka~a~~~~m~~~~~~~~~~r~k~~~~m~~vLTPEQr~~l~~~~~~ 145 (160)
T COG3678 100 AKARAQAEKMENQRQALRELRVKSDNQMYQVLTPEQRAKLQELLAQ 145 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 1222455778888899999999999999999999999776555544
No 7
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=96.58 E-value=0.046 Score=44.27 Aligned_cols=84 Identities=25% Similarity=0.241 Sum_probs=65.5
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCChhhHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 018206 241 PLTEQQLIDVCNLRQSCQQAEDALSQGMDKLQQTLAETVAAGQLAEVGYNPRTGTAMDKLEALVSFVSQADHLRQETLQQ 320 (359)
Q Consensus 241 pLTeqQl~~I~~LqqstqqaEdaLsq~ma~LQqslad~~aa~~lg~g~~~~qm~~Am~kl~~Le~fl~qAD~LR~qTL~q 320 (359)
+||++|..+|..+.......-..+-+.+......+...+.++++.. ..+..++ +.+...-.+....|.+++.+
T Consensus 41 ~Lt~eQ~~~l~~~~~~~~~~~~~~r~~~~~~r~~l~~ll~~~~~D~----~~i~a~~---~~~~~~~~~l~~~~~~~~~~ 113 (125)
T PF13801_consen 41 NLTPEQQAKLRALMDEFRQEMRALRQELRAARQELRALLAAPPPDE----AAIEALL---EEIREAQAELRQERLEHLLE 113 (125)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSS-H----HHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCH----HHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999988886554442 2333333 44555556667789999999
Q ss_pred HHhcCCHHHHH
Q 018206 321 MSRILTTRQAA 331 (359)
Q Consensus 321 l~~ILTp~QAA 331 (359)
+..+|||.|=+
T Consensus 114 ~~~~LtpeQR~ 124 (125)
T PF13801_consen 114 IRAVLTPEQRA 124 (125)
T ss_dssp HHHTT-GGGHH
T ss_pred HHHcCCHHHhC
Confidence 99999999855
No 8
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=96.58 E-value=0.0038 Score=65.76 Aligned_cols=47 Identities=34% Similarity=0.451 Sum_probs=40.1
Q ss_pred CcchHHH---HHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 018206 74 KPFDKIQ---RRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLEQELDRARQ 123 (359)
Q Consensus 74 ~~~~k~~---rrlaqnreaArksrlrkkayvqqLE~sr~kl~qleqel~rar~ 123 (359)
+.|+|++ .|..+|||.|--||.|||-|++-||+ +|..|++|=+..|.
T Consensus 274 ~~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~---rLq~ll~Ene~Lk~ 323 (655)
T KOG4343|consen 274 GSDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEA---RLQALLSENEQLKK 323 (655)
T ss_pred ccCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHh
Confidence 4566654 68999999999999999999999999 99999888776553
No 9
>PRK12750 cpxP periplasmic repressor CpxP; Reviewed
Probab=96.19 E-value=0.31 Score=44.62 Aligned_cols=94 Identities=20% Similarity=0.143 Sum_probs=60.2
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhhcccCCCCChhhHHHHHHHHHHHHHHHHHHhH
Q 018206 241 PLTEQQLIDVCNLRQSCQQAEDA--------LSQGMDKLQQTLAETVAAGQLAEVGYNPRTGTAMDKLEALVSFVSQADH 312 (359)
Q Consensus 241 pLTeqQl~~I~~LqqstqqaEda--------Lsq~ma~LQqslad~~aa~~lg~g~~~~qm~~Am~kl~~Le~fl~qAD~ 312 (359)
+||++|...|..++...+..=.+ ..+.|....+.+.+.+.++++.+. .+....+++ ..--.+.--
T Consensus 52 ~LTdeQk~qik~i~~~~r~~~k~~~~~~r~~~~~~m~a~~~~~~~Ll~a~~FDea----avral~~~~---~~~~~e~~v 124 (170)
T PRK12750 52 DLTDAQKEQLKEMREANRAEMKAKYSGNREQSHAEMKAHHAKVQALVLADDFDEA----AANDLAKQM---VEKQVERRV 124 (170)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHhcCCCCHH----HHHHHHHHH---HHHHHHHHH
Confidence 79999999999998777764333 455666677777777766555432 122221211 111111112
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 018206 313 LRQETLQQMSRILTTRQAARGLLALGEYF 341 (359)
Q Consensus 313 LR~qTL~ql~~ILTp~QAA~fLlAl~ey~ 341 (359)
-|.++.+++..||||-|=+.|---..+..
T Consensus 125 ~~~~~~~~~~~vLTpEQRak~~e~~~~r~ 153 (170)
T PRK12750 125 KMLEKRHQMLSILTPEQKAKFQELQQERM 153 (170)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 36678999999999999999887655543
No 10
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=96.11 E-value=0.0047 Score=50.70 Aligned_cols=34 Identities=32% Similarity=0.330 Sum_probs=29.9
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHH
Q 018206 77 DKIQRRLAQNREAARKSRLRKKAYVQQLETSRLK 110 (359)
Q Consensus 77 ~k~~rrlaqnreaArksrlrkkayvqqLE~sr~k 110 (359)
=|-.||..+||.||++||.||+.++..||.....
T Consensus 29 lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~ 62 (92)
T PF03131_consen 29 LKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQ 62 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3778999999999999999999999999994433
No 11
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=94.34 E-value=0.04 Score=57.37 Aligned_cols=43 Identities=35% Similarity=0.439 Sum_probs=32.7
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018206 77 DKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLEQELD 119 (359)
Q Consensus 77 ~k~~rrlaqnreaArksrlrkkayvqqLE~sr~kl~qleqel~ 119 (359)
=|..||...|-+.|--||-|||-||..||.-...-..=.|||+
T Consensus 250 LKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~ 292 (472)
T KOG0709|consen 250 LKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQ 292 (472)
T ss_pred HHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHH
Confidence 3667999999999999999999999999992222222244554
No 12
>PRK10455 periplasmic protein; Reviewed
Probab=94.33 E-value=0.46 Score=43.18 Aligned_cols=102 Identities=15% Similarity=0.167 Sum_probs=60.0
Q ss_pred hHHHhhc---CCCchhhHHhhcccCCCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcccCCCCChhhH
Q 018206 218 RFFFWIG---GFRPSELLKVLVPQLEPLTEQQLIDVCNLRQSCQQAEDALS-QGMDKLQQTLAETVAAGQLAEVGYNPRT 293 (359)
Q Consensus 218 r~FLWiG---GfRPS~llkLL~~~LepLTeqQl~~I~~LqqstqqaEdaLs-q~ma~LQqslad~~aa~~lg~g~~~~qm 293 (359)
.+.+|-| |..+..+|+-| +||++|...|..|.+..+..-...+ +..+.++ +.+.++++.. ..+
T Consensus 35 ~~~~~~~~~~g~~~~~m~~~L-----~LT~~Qrqqir~im~~~r~~~~~~~~~~r~~l~----~li~ad~FDe----aav 101 (161)
T PRK10455 35 KPMMHHKGKFGPHHDMMFKGL-----NLTDAQKQQIRDIMKAQRDQMKRPPLEERRAMH----DIIASDTFDK----AKA 101 (161)
T ss_pred CccccCCCCCCchhhhhhhhC-----CCCHHHHHHHHHHHHHHHHhhccccHHHHHHHH----HHHccCccCH----HHH
Confidence 4456655 44455555544 8999999999998777665533222 2333333 2233333322 123
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHH
Q 018206 294 GTAMDKLEALVSFVSQADHLRQETLQQMSRILTTRQAARGLL 335 (359)
Q Consensus 294 ~~Am~kl~~Le~fl~qAD~LR~qTL~ql~~ILTp~QAA~fLl 335 (359)
...++++..+ -.+.--.|.++-.+|..||||-|=+.|=-
T Consensus 102 ra~~~k~~~~---~~~~~~~~~~~~~qiy~vLTPEQr~q~~~ 140 (161)
T PRK10455 102 EAQITKMEAQ---RKARMLAHMETQNKIYNVLTPEQKKQFNA 140 (161)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3334444332 22222367888999999999999997753
No 13
>PRK12751 cpxP periplasmic stress adaptor protein CpxP; Reviewed
Probab=92.46 E-value=4.3 Score=37.10 Aligned_cols=100 Identities=18% Similarity=0.177 Sum_probs=64.8
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCChhhHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 018206 241 PLTEQQLIDVCNLRQSCQQAEDALSQGMDKLQQTLAETVAAGQLAEVGYNPRTGTAMDKLEALVSFVSQADHLRQETLQQ 320 (359)
Q Consensus 241 pLTeqQl~~I~~LqqstqqaEdaLsq~ma~LQqslad~~aa~~lg~g~~~~qm~~Am~kl~~Le~fl~qAD~LR~qTL~q 320 (359)
+||++|...|..+....+....... .+ .-+.+-+.+.++++.+. .+...++++.. .-..---.+.++.++
T Consensus 56 ~LTd~QR~qmr~im~~~r~~~~~~~--~~-~~~~m~~Li~Ad~FDea----Avra~~~kma~---~~~e~~v~~~~~~~q 125 (162)
T PRK12751 56 NLTEQQRQQMRDLMRQSHQSQPRLD--LE-DREAMHKLITADKFDEA----AVRAQAEKMSQ---NQIERHVEMAKVRNQ 125 (162)
T ss_pred CCCHHHHHHHHHHHHHhhhcccchh--HH-HHHHHHHHHhcCCCCHH----HHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 8999999999998877776532111 11 22334445555555432 33333444332 111222257789999
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHhccc
Q 018206 321 MSRILTTRQAARGLLALGEYFLRLRALSSL 350 (359)
Q Consensus 321 l~~ILTp~QAA~fLlAl~ey~~rLR~Lssl 350 (359)
+..+|||-|-+.|=--..+....+|.++.+
T Consensus 126 my~lLTPEQra~l~~~~e~r~~~~~~~~~~ 155 (162)
T PRK12751 126 MYNLLTPEQKEALNKKHQERIEKLQQKPAA 155 (162)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999998888888888886643
No 14
>PRK10363 cpxP periplasmic repressor CpxP; Reviewed
Probab=92.37 E-value=2.2 Score=39.29 Aligned_cols=99 Identities=21% Similarity=0.221 Sum_probs=62.3
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcccCCCCChhhHHHHHHHHHH--HHHHHHHHhHHHHHH
Q 018206 241 PLTEQQLIDVCNLRQSCQQAEDALSQ-GMDKLQQTLAETVAAGQLAEVGYNPRTGTAMDKLEA--LVSFVSQADHLRQET 317 (359)
Q Consensus 241 pLTeqQl~~I~~LqqstqqaEdaLsq-~ma~LQqslad~~aa~~lg~g~~~~qm~~Am~kl~~--Le~fl~qAD~LR~qT 317 (359)
+||++|...|..|.+.-+.+...++. +++.++ +-+.++.+.. ..+...++|+.. .+.-| -|.++
T Consensus 50 dLTdaQRqQmRdLm~~~r~~~~~~~~~er~amh----~LI~ad~FDE----aavra~a~kma~~~~e~~V-----em~k~ 116 (166)
T PRK10363 50 SLTEHQRQQMRDLMQQARHEQPPVNVSEMETMH----RLVTAENFDE----NAVRAQAEKMAQEQVARQV-----EMAKV 116 (166)
T ss_pred CCCHHHHHHHHHHHHHHHhcccccCHHHHHHHH----HHHhcCCCCH----HHHHHHHHHHHHHHHHHHH-----HHHHH
Confidence 89999999999999888766554432 344444 3333333332 233333344432 22222 35677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHhccccc
Q 018206 318 LQQMSRILTTRQAARGLLALGEYFLRLRALSSLWA 352 (359)
Q Consensus 318 L~ql~~ILTp~QAA~fLlAl~ey~~rLR~Lsslw~ 352 (359)
-++|..||||-|-+.|=--.-+....+|.++.+=.
T Consensus 117 ~nqmy~lLTPEQKaq~~~~~~~rm~~~~~~~~~q~ 151 (166)
T PRK10363 117 RNQMYRLLTPEQQAVLNEKHQQRMEQLRDVTQWQK 151 (166)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 88999999999999996666666667777664433
No 15
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=91.93 E-value=0.24 Score=48.46 Aligned_cols=29 Identities=45% Similarity=0.597 Sum_probs=24.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 018206 78 KIQRRLAQNREAARKSRLRKKAYVQQLET 106 (359)
Q Consensus 78 k~~rrlaqnreaArksrlrkkayvqqLE~ 106 (359)
|..|+=+.|||||+|||.||---|-+||.
T Consensus 206 kleRkrlrnreaa~Kcr~rkLdrisrLEd 234 (279)
T KOG0837|consen 206 KLERKRLRNREAASKCRKRKLDRISRLED 234 (279)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 45577788999999999999877777776
No 16
>PF07813 LTXXQ: LTXXQ motif family protein; InterPro: IPR012899 This five residue motif is found in a number of bacterial proteins bearing similarity to the protein CpxP (P32158 from SWISSPROT). This is a periplasmic protein that aids in combating extracytoplasmic protein-mediated toxicity, and may also be involved in the response to alkaline pH []. Another member of this family, Spy (P77754 from SWISSPROT) is also a periplasmic protein that may be involved in the response to stress []. The homology between CpxP and Spy may indicate that these two proteins are functionally related []. The motif is found repeated twice in many members of this entry. ; GO: 0042597 periplasmic space; PDB: 3ITF_B 3QZC_B 3OEO_D 3O39_A.
Probab=91.30 E-value=1.3 Score=35.09 Aligned_cols=83 Identities=16% Similarity=0.249 Sum_probs=45.3
Q ss_pred ccCCCCcHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhcccCCCCChhhHHHHHHHHHHHHHHHHHHhHH
Q 018206 237 PQLEPLTEQQLIDVCNLRQSCQQAEDAL---SQGMDKLQQTLAETVAAGQLAEVGYNPRTGTAMDKLEALVSFVSQADHL 313 (359)
Q Consensus 237 ~~LepLTeqQl~~I~~LqqstqqaEdaL---sq~ma~LQqslad~~aa~~lg~g~~~~qm~~Am~kl~~Le~fl~qAD~L 313 (359)
..| +||++|...|..|....+..-..+ .+.+.++.. +++...-..++.+++.+...-.+.-..
T Consensus 11 ~~L-~LT~eQ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (100)
T PF07813_consen 11 EEL-NLTDEQKAKWRAIRQAMKAKMKPLKAMREQLRALRD-------------PSFDEAAPEALAAMAEMMELRAEMMEE 76 (100)
T ss_dssp TTS---THHHHHHHHHHHHHHCTTS------HHHHHHHHH-------------SS--HHHHHHHH--HHCHHHHHHHHHH
T ss_pred hhC-CCCHHHHHHHHHHHHHHHHHHHhhcccHHHHHHhcc-------------ccCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 445 699999999999988887776666 222222222 011001111122223444444455556
Q ss_pred HHHHHHHHHhcCCHHHHHHH
Q 018206 314 RQETLQQMSRILTTRQAARG 333 (359)
Q Consensus 314 R~qTL~ql~~ILTp~QAA~f 333 (359)
|..+...+..||||-|=+.|
T Consensus 77 ~~~~~~~~~~vLt~eQk~~~ 96 (100)
T PF07813_consen 77 RAKAQHALYAVLTPEQKEKF 96 (100)
T ss_dssp HHHHHHHHHTTS-HHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHH
Confidence 77889999999999998776
No 17
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=89.64 E-value=0.82 Score=44.47 Aligned_cols=44 Identities=36% Similarity=0.417 Sum_probs=36.1
Q ss_pred cchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 018206 75 PFDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLEQELDRA 121 (359)
Q Consensus 75 ~~~k~~rrlaqnreaArksrlrkkayvqqLE~sr~kl~qleqel~ra 121 (359)
...|++||=-+||=||..+|=||||-...+|- ....|+.|-++.
T Consensus 66 ~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~---~i~dL~een~~L 109 (292)
T KOG4005|consen 66 WEEKVQRRKLKNRVAAQTARDRKKARMEEMEY---EIKDLTEENEIL 109 (292)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 46799999999999999999999999999988 555555554443
No 18
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=80.19 E-value=4.4 Score=39.55 Aligned_cols=46 Identities=33% Similarity=0.340 Sum_probs=31.5
Q ss_pred CcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 018206 74 KPFDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLEQELDRAR 122 (359)
Q Consensus 74 ~~~~k~~rrlaqnreaArksrlrkkayvqqLE~sr~kl~qleqel~rar 122 (359)
+.+++-..|...|=+|+||||...|.=- .|. ..|...||.|.+..|
T Consensus 190 ~~~~~y~err~rNN~A~~kSR~~~k~~~--~e~-~~r~~~leken~~lr 235 (269)
T KOG3119|consen 190 KKDPEYKERRRRNNEAVRKSRDKRKQKE--DEM-AHRVAELEKENEALR 235 (269)
T ss_pred cCCHHHHHHHHhhhHHHHHhhhhHHHHH--HHH-HHHHHHHHHHHHHHH
Confidence 4577888899999999999998766433 222 335556665555544
No 19
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=72.46 E-value=13 Score=37.20 Aligned_cols=52 Identities=29% Similarity=0.296 Sum_probs=37.3
Q ss_pred cCCcchHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHh-----------HHHHHHHHHHHHHHHh
Q 018206 72 ASKPFDKIQRRLAQNREA-ARKSRLRKKAYVQQLETS-----------RLKLVQLEQELDRARQ 123 (359)
Q Consensus 72 ~~~~~~k~~rrlaqnrea-ArksrlrkkayvqqLE~s-----------r~kl~qleqel~rar~ 123 (359)
..+.+.|++||=+|+|.+ |-+=|-||||=-+.|+.. |.++..||.|++.-||
T Consensus 220 ~~~~~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKq 283 (294)
T KOG4571|consen 220 PYKTPEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQ 283 (294)
T ss_pred CCCCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777766665 888999999999888753 3345567888877774
No 20
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=42.45 E-value=83 Score=28.23 Aligned_cols=34 Identities=26% Similarity=0.320 Sum_probs=25.0
Q ss_pred chHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHH
Q 018206 76 FDKIQRRLAQNREAARKSRLRKKAYVQQLETSRL 109 (359)
Q Consensus 76 ~~k~~rrlaqnreaArksrlrkkayvqqLE~sr~ 109 (359)
.-|-.||--+||-=|-.+|.+.=---.+||+.+.
T Consensus 51 rlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~ 84 (135)
T KOG4196|consen 51 RLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKA 84 (135)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3466789999999999999876555556666333
No 21
>PRK11702 hypothetical protein; Provisional
Probab=39.46 E-value=14 Score=31.88 Aligned_cols=13 Identities=46% Similarity=0.698 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHH
Q 018206 91 RKSRLRKKAYVQQ 103 (359)
Q Consensus 91 rksrlrkkayvqq 103 (359)
|+.|||||-||-.
T Consensus 5 RsRRlRKKL~v~E 17 (108)
T PRK11702 5 RSRRLRKKMHIDE 17 (108)
T ss_pred hhHHHHhhhhhHh
Confidence 6889999999854
No 22
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=38.18 E-value=1.2e+02 Score=26.75 Aligned_cols=57 Identities=19% Similarity=0.318 Sum_probs=30.4
Q ss_pred HHHhhcCCCchhhHHhhcccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018206 219 FFFWIGGFRPSELLKVLVPQLEPLTEQQLIDVCNLRQSCQQAEDALSQGMDKLQQTL 275 (359)
Q Consensus 219 ~FLWiGGfRPS~llkLL~~~LepLTeqQl~~I~~LqqstqqaEdaLsq~ma~LQqsl 275 (359)
+++|.-||.=|.+.=+....|.+=-..=-..+.++-.++..+-+.|+++++.+=..+
T Consensus 21 ~Y~wwKGws~sD~M~vTrr~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~kl 77 (126)
T PF07889_consen 21 GYMWWKGWSFSDLMFVTRRSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKL 77 (126)
T ss_pred eeeeecCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 589999999888776554444331111112334444445555555555554444333
No 23
>PF13628 DUF4142: Domain of unknown function (DUF4142)
Probab=37.03 E-value=2.7e+02 Score=23.81 Aligned_cols=97 Identities=19% Similarity=0.224 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH-HHhhccccc-CCCCCCC---C-CCCCccchHHHHHHHHHHHHHhHH-HHHHH
Q 018206 94 RLRKKAYVQQLETSRLKLVQLEQELDR-ARQQGLYVG-SGVEGVH---M-GFSGTVNSAFEMEYGHWLEEQSRQ-ICELR 166 (359)
Q Consensus 94 rlrkkayvqqLE~sr~kl~qleqel~r-ar~qg~~~~-~~~~~~~---~-~~~~~~~~~F~~~Y~~Wleeq~r~-l~eLR 166 (359)
.-.=|+|-+.+.+ --.++.++|.+ |.+.|+-+. ......+ + ...+.....|+..|-.....-++. +..+.
T Consensus 30 ~~~Vk~~A~~~~~---dh~~~~~~l~~la~~~~v~lp~~~~~~~~~~~l~~L~~~~g~~FD~~yl~~~i~~h~~~l~~~~ 106 (139)
T PF13628_consen 30 SPEVKAFAQQMVE---DHTQANQQLAALAAKKGVTLPPTALSAEQQAELDRLQKLSGSAFDRAYLDAQIKAHEKALALFE 106 (139)
T ss_pred CHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCCcccccccHhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445799999988 55566667753 456787776 2211110 0 011223359999998877655544 66666
Q ss_pred HHHhcCCCchHHHHHHHHHHhhHHHHH
Q 018206 167 NALQAHIGDVELRILVDAGMSHYFELF 193 (359)
Q Consensus 167 ~AL~s~~~d~eL~~LVd~~l~HY~e~f 193 (359)
..+..+..|.+|+.++...+.-.....
T Consensus 107 ~~~~~~~~~~~lk~~a~~~lp~l~~hl 133 (139)
T PF13628_consen 107 KQLAASGKDPELKAFAQETLPVLEAHL 133 (139)
T ss_pred HHhhccCCCHHHHHHHHHHhHHHHHHH
Confidence 635566678899998887765544443
No 24
>PF11459 DUF2893: Protein of unknwon function (DUF2893); InterPro: IPR021561 This is a bacterial family of uncharacterised proteins.
Probab=35.61 E-value=82 Score=25.17 Aligned_cols=41 Identities=24% Similarity=0.231 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 018206 301 EALVSFVSQADHLRQETLQQMSRILTTRQAARGLLALGEYF 341 (359)
Q Consensus 301 ~~Le~fl~qAD~LR~qTL~ql~~ILTp~QAA~fLlAl~ey~ 341 (359)
+....++.-..+||-+.|+++.+--|-+++.|-++.+|+.+
T Consensus 21 e~a~~l~egL~nLrp~~lq~LL~~C~svKvkRLfl~lA~~~ 61 (69)
T PF11459_consen 21 EEADELMEGLRNLRPRVLQELLEHCTSVKVKRLFLYLAERA 61 (69)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHCccHHHHHHHHHHHHHc
Confidence 34466677777899999999999999999999999999865
No 25
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=35.38 E-value=37 Score=26.21 Aligned_cols=18 Identities=33% Similarity=0.364 Sum_probs=10.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHh
Q 018206 103 QLETSRLKLVQLEQELDRARQ 123 (359)
Q Consensus 103 qLE~sr~kl~qleqel~rar~ 123 (359)
+||. +|.+.||+++.++.
T Consensus 36 ~LE~---rL~~ae~ra~~ae~ 53 (60)
T PF11471_consen 36 ALEQ---RLQAAEQRAQAAEA 53 (60)
T ss_pred HHHH---HHHHHHHHHHHHHH
Confidence 3555 66666666665543
No 26
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.02 E-value=2.7e+02 Score=28.84 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018206 250 VCNLRQSCQQAEDALSQGMDKLQQTL 275 (359)
Q Consensus 250 I~~LqqstqqaEdaLsq~ma~LQqsl 275 (359)
|..-++++..+++.|.+.+..||..+
T Consensus 244 L~~G~~kL~~~~etLEqq~~~L~~ni 269 (365)
T KOG2391|consen 244 LNIGKQKLVAMKETLEQQLQSLQKNI 269 (365)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 44556778888888888888888654
No 27
>cd00223 TOPRIM_TopoIIB_SPO TOPRIM_TopoIIB_SPO: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in the type IIB family of DNA topoisomerases and Spo11. This subgroup contains proteins similar to Sulfolobus shibatae topoisomerase VI (TopoVI) and Saccharomyces cerevisiae meiotic recombination factor: Spo11. Type II DNA topoisomerases catalyze the ATP-dependent transport of one DNA duplex through another, in the process generating transient double strand breaks via covalent attachments to both DNA strands at the 5' positions. TopoVI enzymes are heterotetramers found in archaea and plants. Spo11 plays a role in generating the double strand breaks that initiate homologous recombination during meiosis. S. shibatae TopoVI relaxes both positive and negative supercoils, and in addition has a strong decatenase activity. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspart
Probab=32.02 E-value=61 Score=28.71 Aligned_cols=38 Identities=29% Similarity=0.576 Sum_probs=30.0
Q ss_pred HHhhcCCCchhhHHhhcccCCCCcHHHHHHHHHHHHHHH
Q 018206 220 FFWIGGFRPSELLKVLVPQLEPLTEQQLIDVCNLRQSCQ 258 (359)
Q Consensus 220 FLWiGGfRPS~llkLL~~~LepLTeqQl~~I~~Lqqstq 258 (359)
+.|+ |.+|+++.++-.....|||+..+..+.+|..+..
T Consensus 90 l~~~-G~~~~d~~~~~~~~~~~Ls~~d~~~l~~ll~~~~ 127 (160)
T cd00223 90 LRWL-GLRPSDIIRLPDLPLLPLSERDLKRAKSLLRRPR 127 (160)
T ss_pred cEEc-cCCHHHHhhccccccCCCCHHHHHHHHHHHhccc
Confidence 5665 6889999874445677999999999999888654
No 28
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=31.34 E-value=2.2e+02 Score=21.05 Aligned_cols=51 Identities=25% Similarity=0.431 Sum_probs=32.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhcccccCCCCCCCCCCCCccchHHHHHHHHHHHHHhHHHHHHH
Q 018206 99 AYVQQLETSRLKLVQLEQELDRARQQGLYVGSGVEGVHMGFSGTVNSAFEMEYGHWLEEQSRQICELR 166 (359)
Q Consensus 99 ayvqqLE~sr~kl~qleqel~rar~qg~~~~~~~~~~~~~~~~~~~~~F~~~Y~~Wleeq~r~l~eLR 166 (359)
.+...|++ .+.+|+..++.. ++. ..|..+..|...|..|-....+....|.
T Consensus 18 ~~~~~l~~---~~~~l~~~~~~l--~~~------------W~G~a~~af~~~~~~~~~~~~~~~~~L~ 68 (86)
T PF06013_consen 18 AQADELQS---QLQQLESSIDSL--QAS------------WQGEAADAFQDKFEEWNQAFRQLNEALE 68 (86)
T ss_dssp HHHHHHHH---HHHHHHHHHHHH--GGG------------BTSSTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHH--hhh------------CCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555 556666666543 111 1344577999999999887777766653
No 29
>PF15219 TEX12: Testis-expressed 12
Probab=31.03 E-value=3e+02 Score=23.46 Aligned_cols=60 Identities=15% Similarity=0.266 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCCChhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 018206 262 DALSQGMDKLQQTLAETVAAGQLAEVGYNPRTGTAMDKLEALVSFVSQADHLRQETLQQM 321 (359)
Q Consensus 262 daLsq~ma~LQqslad~~aa~~lg~g~~~~qm~~Am~kl~~Le~fl~qAD~LR~qTL~ql 321 (359)
+.++++|.-+--..|..+.........|+..++.....-.+||+|++|--..=+|++.-+
T Consensus 35 ~d~skEinlmls~yA~ilSEraavd~syi~eiD~lfkEA~~lEnfLkqkre~LrQrlt~i 94 (100)
T PF15219_consen 35 NDMSKEINLMLSTYAKILSERAAVDASYITEIDGLFKEANALENFLKQKRECLRQRLTVI 94 (100)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666665666655332223346777777777777889999988765433444433
No 30
>KOG3759 consensus Uncharacterized RUN domain protein [Signal transduction mechanisms]
Probab=30.05 E-value=2.5e+02 Score=30.38 Aligned_cols=83 Identities=31% Similarity=0.415 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccccCCCCCCCCCCCCccchHHHHHHHHHHHHHhHHHHHHHHHHhc
Q 018206 92 KSRLRKKAYVQQLETSRLKLVQLEQELDRARQQGLYVGSGVEGVHMGFSGTVNSAFEMEYGHWLEEQSRQICELRNALQA 171 (359)
Q Consensus 92 ksrlrkkayvqqLE~sr~kl~qleqel~rar~qg~~~~~~~~~~~~~~~~~~~~~F~~~Y~~Wleeq~r~l~eLR~AL~s 171 (359)
|-+=|.|-.|+||-+ .|..||+- .|=.|.|. +. .++ -++.|+-.+.|||.-|+=
T Consensus 142 kq~e~qkeLi~QLk~---Ql~dLE~~--------AYe~Geg~---LP--q~v----------iLekQk~ilDeLr~Kl~l 195 (621)
T KOG3759|consen 142 KQNERQKELIKQLKE---QLEDLERT--------AYENGEGE---LP--QTV----------ILEKQKAILDELREKLEL 195 (621)
T ss_pred hhcchHHHHHHHHHH---HHHHHHHH--------HHhcCCCc---Cc--hHH----------HHHHHHHHHHHHHHHhhc
Confidence 344567788888877 66666643 23222111 11 111 178888899999999863
Q ss_pred C-----CCchHHHHHHHHHHhhHHHHHHHHHHhh
Q 018206 172 H-----IGDVELRILVDAGMSHYFELFRMKTTAA 200 (359)
Q Consensus 172 ~-----~~d~eL~~LVd~~l~HY~e~f~~Ks~aA 200 (359)
+ .+-.||+.-||.++..+-.-|++|.-+.
T Consensus 196 nl~i~~lsteelr~qVD~A~~q~VnP~k~KeQLV 229 (621)
T KOG3759|consen 196 NLDIDKLSTEELRRQVDDALKQLVNPFKEKEQLV 229 (621)
T ss_pred cCCcccccHHHHHHHHHHHHHHHhChHHHHHHHH
Confidence 3 4467999999999999999999997543
No 31
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=28.17 E-value=9.8e+02 Score=27.65 Aligned_cols=45 Identities=18% Similarity=0.188 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHhcCCCchHHHHHHHHHHhhHHHHHHHHHHhhhcC
Q 018206 159 SRQICELRNALQAHIGDVELRILVDAGMSHYFELFRMKTTAAKAD 203 (359)
Q Consensus 159 ~r~l~eLR~AL~s~~~d~eL~~LVd~~l~HY~e~f~~Ks~aA~~D 203 (359)
..--..|+.||...++|.|+..|.+....--++|.+..+.-+..+
T Consensus 506 r~AQ~aL~eAL~~gAsdeEI~~Lm~eLR~Am~~ym~~LAeq~~~~ 550 (851)
T TIGR02302 506 RAAQDALKDALERGASDEEIKQLTDKLRAAMQTYMRQLAQQLRNN 550 (851)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Confidence 334567888899999999999999999999999999887766544
No 32
>PF10552 ORF6C: ORF6C domain; InterPro: IPR018878 This entry represents the carboxy-terminal domain from ORF6 (Q9B012 from SWISSPROT), an antirepressor protein from Lactococcus phage bIL285 [].
Probab=27.56 E-value=3.8e+02 Score=22.65 Aligned_cols=43 Identities=19% Similarity=0.252 Sum_probs=30.5
Q ss_pred HHHHHHHhhHHHHHHHHHH--hhhcCcchhccCCCCChhhhHHHhhcCCCchhhHHh
Q 018206 180 ILVDAGMSHYFELFRMKTT--AAKADVFYVMSGMWKTPAERFFFWIGGFRPSELLKV 234 (359)
Q Consensus 180 ~LVd~~l~HY~e~f~~Ks~--aA~~DVf~llsg~W~tp~Er~FLWiGGfRPS~llkL 234 (359)
.+...+-..+..+|.+.+. ..+.| +|.++-+|-+|+|+..+..
T Consensus 69 k~f~~i~~~lk~~F~V~sY~~I~~kd------------fd~A~~~I~~W~p~~~l~~ 113 (116)
T PF10552_consen 69 KLFSDIYRDLKRHFGVPSYKDIPRKD------------FDEALEFINNWEPSTALKM 113 (116)
T ss_pred HHHHHHHHHHHHHhCCchHHhhhHHH------------HHHHHHHHHHcCCCHHHHH
Confidence 4666667777777777542 23344 5889999999999987754
No 33
>KOG3725 consensus SH3 domain protein SH3GLB [Signal transduction mechanisms]
Probab=27.05 E-value=5.5e+02 Score=25.95 Aligned_cols=25 Identities=28% Similarity=0.390 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhh
Q 018206 177 ELRILVDAGMSHYFELFRMKTTAAK 201 (359)
Q Consensus 177 eL~~LVd~~l~HY~e~f~~Ks~aA~ 201 (359)
=|+..|+.-|..|.+-|+.-..+-+
T Consensus 236 CL~dFVeaQmtyYAQcyq~MlDLQk 260 (375)
T KOG3725|consen 236 CLRDFVEAQMTYYAQCYQLMLDLQK 260 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999998887654443
No 34
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=25.92 E-value=84 Score=24.38 Aligned_cols=20 Identities=35% Similarity=0.592 Sum_probs=14.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHh
Q 018206 101 VQQLETSRLKLVQLEQELDRARQ 123 (359)
Q Consensus 101 vqqLE~sr~kl~qleqel~rar~ 123 (359)
|..|+. ++..|+.|+.|+++
T Consensus 23 v~EL~~---RIa~L~aEI~R~~~ 42 (59)
T PF06698_consen 23 VEELEE---RIALLEAEIARLEA 42 (59)
T ss_pred HHHHHH---HHHHHHHHHHHHHH
Confidence 456666 77778888888774
No 35
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=25.24 E-value=6.8e+02 Score=24.80 Aligned_cols=82 Identities=13% Similarity=0.162 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCCC----hhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018206 261 EDALSQGMDKLQQTLAETVAAGQLAEVGY----NPRTGTAMDKLEALVSFVSQADHLRQETLQQMSRILTTRQAARGLLA 336 (359)
Q Consensus 261 EdaLsq~ma~LQqslad~~aa~~lg~g~~----~~qm~~Am~kl~~Le~fl~qAD~LR~qTL~ql~~ILTp~QAA~fLlA 336 (359)
-..|..++..++..+..... +.-+.+.+ ..-++.+-.++..|...+.+++..-.+++.-.-+-=+....-+|+--
T Consensus 283 i~~l~~~~~~~~~~l~~~~~-~~~~~~~f~~~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~~~~~~ff~~ 361 (370)
T PF02181_consen 283 IKELEKGLEKIKKELEAIEK-DEEDDDKFKEKMKEFLEEAETKLDELQELYEELEEAFKQLLQYFGEDPKKMSPEEFFKI 361 (370)
T ss_dssp HHHHHHHHHHHHHHHHHCCT-TSSTT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccc-cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence 33445555555555544322 11111222 23355666788899999999998888888777554455667777777
Q ss_pred HHHHHHH
Q 018206 337 LGEYFLR 343 (359)
Q Consensus 337 l~ey~~r 343 (359)
+.+|...
T Consensus 362 l~~F~~~ 368 (370)
T PF02181_consen 362 LSQFIDM 368 (370)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776543
No 36
>PF13586 DDE_Tnp_1_2: Transposase DDE domain
Probab=24.92 E-value=32 Score=27.33 Aligned_cols=18 Identities=33% Similarity=0.575 Sum_probs=14.5
Q ss_pred CCCChhhhHHHhhcCCCc
Q 018206 211 MWKTPAERFFFWIGGFRP 228 (359)
Q Consensus 211 ~W~tp~Er~FLWiGGfRP 228 (359)
..+.-.||+|-||.+||-
T Consensus 45 ~~Rw~VEr~f~wlk~~Rr 62 (88)
T PF13586_consen 45 KRRWVVERTFAWLKRFRR 62 (88)
T ss_pred ccceehhhhhHHHHHcCc
Confidence 344569999999999974
No 37
>PF09036 Bcr-Abl_Oligo: Bcr-Abl oncoprotein oligomerisation domain; InterPro: IPR015123 This entry represents the oligomerisation domain of the breakpoint cluster region oncoprotein Bcr, and the Bcr/Abl (Abelson-leukemia-virus) fusion protein created by a reciprocal (9;22) fusion []. Brc displays serine/threonine protein kinase activity (2.7.11.1 from EC), acting as a GTPase-activating protein for RAC1 and CDC42. Brc promotes the exchange of RAC or CDC42-bound GDP by GTP, thereby activating them []. The Bcr/Abl fusion protein loses some of the regulatory function of Bcr with regards to small Rho-like GTPases with negative consequences on cell motility, in particular on the capacity to adhere to endothelial cells []. The Bcr, Bcr/Abl oncoprotein oligomerisation domain consists of a short N-terminal helix (alpha-1), a flexible loop and a long C-terminal helix (alpha-2). Together these form an N-shaped structure, with the loop allowing the two helices to assume a parallel orientation. The monomeric domains associate into a dimer through the formation of an antiparallel coiled coil between the alpha-2 helices and domain swapping of two alpha-1 helices, where one alpha-1 helix swings back and packs against the alpha-2 helix from the second monomer. Two dimers then associate into a tetramer. The oligomerisation domain is essential for the oncogenicity of the Bcr-Abl protein []. ; GO: 0004674 protein serine/threonine kinase activity, 0005096 GTPase activator activity, 0006468 protein phosphorylation, 0007165 signal transduction; PDB: 1K1F_C.
Probab=24.74 E-value=79 Score=25.85 Aligned_cols=27 Identities=33% Similarity=0.604 Sum_probs=21.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhhcccc
Q 018206 102 QQLETSRLKLVQLEQELDRARQQGLYV 128 (359)
Q Consensus 102 qqLE~sr~kl~qleqel~rar~qg~~~ 128 (359)
|.||.++..+..||||+-+-|=-=+|+
T Consensus 33 ~eLerCK~sirrLeqevnkERFrmiYL 59 (79)
T PF09036_consen 33 QELERCKASIRRLEQEVNKERFRMIYL 59 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 679999999999999998776555555
No 38
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=24.52 E-value=85 Score=31.87 Aligned_cols=47 Identities=32% Similarity=0.379 Sum_probs=34.4
Q ss_pred CcchHHHHH-HHhhHHHH-----HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018206 74 KPFDKIQRR-LAQNREAA-----RKSRLRKKAYVQQLETSRLKLVQLEQELDR 120 (359)
Q Consensus 74 ~~~~k~~rr-laqnreaA-----rksrlrkkayvqqLE~sr~kl~qleqel~r 120 (359)
..|-|++|. +|+.|-.. |..==.|..||.|||..+-|..|||-+++.
T Consensus 99 qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs 151 (319)
T PF09789_consen 99 QGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQS 151 (319)
T ss_pred hchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777776 66555332 222235679999999999999999999984
No 39
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=24.31 E-value=3.7e+02 Score=26.07 Aligned_cols=15 Identities=40% Similarity=0.467 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHhccc
Q 018206 336 ALGEYFLRLRALSSL 350 (359)
Q Consensus 336 Al~ey~~rLR~Lssl 350 (359)
+..++..|+.+|..|
T Consensus 240 ~~~G~l~R~~Al~~L 254 (301)
T PF14362_consen 240 ANDGFLARLEALWEL 254 (301)
T ss_pred cCCCHHHHHHHHHHH
Confidence 344466666666554
No 40
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=24.12 E-value=2.3e+02 Score=24.25 Aligned_cols=38 Identities=34% Similarity=0.418 Sum_probs=21.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018206 82 RLAQNREAARKSRLRKKAYVQQLETSRLKLVQLEQELDR 120 (359)
Q Consensus 82 rlaqnreaArksrlrkkayvqqLE~sr~kl~qleqel~r 120 (359)
=++|||-++| .|+|-+-=+|-=+.+......|-.+|+.
T Consensus 54 lmsQNRq~~~-dr~ra~~D~~inl~ae~ei~~l~~~l~~ 91 (108)
T PF06210_consen 54 LMSQNRQAAR-DRLRAELDYQINLKAEQEIERLHRKLDA 91 (108)
T ss_pred HHHhhHhHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3679998877 5666654444444444455555555543
No 41
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=24.06 E-value=2.4e+02 Score=23.70 Aligned_cols=29 Identities=52% Similarity=0.733 Sum_probs=19.9
Q ss_pred HHhHHHHHHHHHHHHHHHhh---------cccccCCCC
Q 018206 105 ETSRLKLVQLEQELDRARQQ---------GLYVGSGVE 133 (359)
Q Consensus 105 E~sr~kl~qleqel~rar~q---------g~~~~~~~~ 133 (359)
+..+-+|..++.+++..|+. |+++|+|.|
T Consensus 54 ~~~~~~l~~~~~~lk~~r~~~~v~k~v~q~lI~gSgVd 91 (106)
T PF05837_consen 54 EELSEKLEKLEKELKKSRQRWRVMKNVFQALIVGSGVD 91 (106)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 44556788888888888873 666665543
No 42
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=23.13 E-value=2.3e+02 Score=24.82 Aligned_cols=39 Identities=18% Similarity=0.380 Sum_probs=28.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 018206 85 QNREAARKSRLRKKAYVQQLETSRLKLVQLEQELDRARQ 123 (359)
Q Consensus 85 qnreaArksrlrkkayvqqLE~sr~kl~qleqel~rar~ 123 (359)
...-++||++.+....-+.||+=+.++..|++++++-.+
T Consensus 95 E~~Rs~~ke~~Ke~~~~~~l~~L~~~i~~L~~~~~~~~~ 133 (134)
T PF07047_consen 95 EYWRSARKEAKKEEELQERLEELEERIEELEEQVEKQQE 133 (134)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 555566777777666667777777799999988886443
No 43
>PHA03395 p10 fibrous body protein; Provisional
Probab=23.08 E-value=4.5e+02 Score=22.02 Aligned_cols=60 Identities=22% Similarity=0.281 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCChhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCH
Q 018206 256 SCQQAEDALSQGMDKLQQTLAETVAAGQLAEVGYNPRTGTAMDKLEALVSFVSQADHLRQETLQQMSRILTT 327 (359)
Q Consensus 256 stqqaEdaLsq~ma~LQqslad~~aa~~lg~g~~~~qm~~Am~kl~~Le~fl~qAD~LR~qTL~ql~~ILTp 327 (359)
-++.+-.++++.+..||+.+.+--. -...+.+--+||.++-.-+.-.+ .++..+..||+|
T Consensus 8 ~Ir~dIkavd~KVdalQ~~V~~l~~--------nlpdv~~l~~kLdaq~~~Ltti~----tkv~~I~diLnp 67 (87)
T PHA03395 8 LIRQDIKAVSDKVDALQAAVDDVRA--------NLPDVTEINEKLDAQSASLDTIS----SAVDNITDILNP 67 (87)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHh--------cCCcHHHHHHHHHhHHHHHHHHH----HHHHHHHHccCC
Confidence 3677788899999999998877641 11223333355655555554333 566677888886
No 44
>COG3165 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.76 E-value=4.3e+02 Score=25.37 Aligned_cols=49 Identities=27% Similarity=0.420 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc-ccCCCCChhhHHHHHHHHHHHHHHHHHHhHHHHHH
Q 018206 257 CQQAEDALSQGMDKLQQTLAETVAAG-QLAEVGYNPRTGTAMDKLEALVSFVSQADHLRQET 317 (359)
Q Consensus 257 tqqaEdaLsq~ma~LQqslad~~aa~-~lg~g~~~~qm~~Am~kl~~Le~fl~qAD~LR~qT 317 (359)
.+..-..+.+++.++|+.+|+.+... ++..|. .+++.|..+-|+||..+
T Consensus 139 l~~~~~~l~~~~~~~q~~~Ae~iTEE~r~~v~~------------~ela~f~~evd~lr~~~ 188 (204)
T COG3165 139 LRSGSRFLKHGLKQLQRNLAEAITEEWRMAVGP------------LELADFAEEVDALRDAV 188 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchhhccCCh------------HHHHHHHHHHHHHHHHH
Confidence 45556678899999999999998532 222221 23466666666666544
No 45
>PF00589 Phage_integrase: Phage integrase family; InterPro: IPR002104 Phage integrase proteins cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment [, ]. The catalytic site residues in CRE recombinase (P06956 from SWISSPROT) are Arg-173, His-289, Arg-292 and Tyr-324.; GO: 0003677 DNA binding, 0006310 DNA recombination, 0015074 DNA integration; PDB: 1A0P_A 1Z1G_B 1Z19_A 1AE9_A 1Z1B_A 1P7D_B 2A3V_C 1Q3V_E 1Q3U_A 1OUQ_F ....
Probab=21.51 E-value=39 Score=28.23 Aligned_cols=19 Identities=37% Similarity=0.634 Sum_probs=12.9
Q ss_pred HHhhcCCCchhhHHhhccc
Q 018206 220 FFWIGGFRPSELLKVLVPQ 238 (359)
Q Consensus 220 FLWiGGfRPS~llkLL~~~ 238 (359)
+++.+|+||++++.|=..+
T Consensus 29 l~~~tG~R~~El~~l~~~~ 47 (173)
T PF00589_consen 29 LLLYTGLRPSELLRLRWDD 47 (173)
T ss_dssp HHHHHT--HHHHHT-BGGG
T ss_pred HHHHHccchhhhhhhhhhh
Confidence 7888999999999876543
No 46
>PF07445 priB_priC: Primosomal replication protein priB and priC; InterPro: IPR010890 This family contains the bacterial primosomal replication proteins priB and priC (approximately 180 residues long). In Escherichia coli, these function in the assembly of the primosome [].
Probab=21.41 E-value=3.8e+02 Score=24.53 Aligned_cols=45 Identities=13% Similarity=0.217 Sum_probs=35.2
Q ss_pred HHHHHHHhHHHHHHHHHHhcCCCchHHHHHHHHHHhhHHHHHHHHH
Q 018206 152 GHWLEEQSRQICELRNALQAHIGDVELRILVDAGMSHYFELFRMKT 197 (359)
Q Consensus 152 ~~Wleeq~r~l~eLR~AL~s~~~d~eL~~LVd~~l~HY~e~f~~Ks 197 (359)
...+.|-+..+..|..+...+.. ....-+.+++.+.+..+.+.-.
T Consensus 43 ~~yl~Ei~~~l~~L~~~~~~~~~-~~~~~laEkL~~Q~~AL~r~l~ 87 (173)
T PF07445_consen 43 SDYLQEIEQTLAQLQQQVEQNRL-QQVAFLAEKLVAQIEALQRELA 87 (173)
T ss_pred HHHHHHHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 33488999999999988876643 5567899999999999877654
No 47
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=20.96 E-value=97 Score=25.93 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=19.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHhh
Q 018206 100 YVQQLETSRLKLVQLEQELDRARQQ 124 (359)
Q Consensus 100 yvqqLE~sr~kl~qleqel~rar~q 124 (359)
=||-|+. +++.||-||-.||++
T Consensus 74 aIq~LdK---tIS~LEMELAaARa~ 95 (95)
T PF13334_consen 74 AIQSLDK---TISSLEMELAAARAE 95 (95)
T ss_pred HHHHHHH---HHHHHHHHHHHHhcC
Confidence 3778888 999999999999964
No 48
>PF13990 YjcZ: YjcZ-like protein
Probab=20.87 E-value=8.5e+02 Score=24.35 Aligned_cols=30 Identities=37% Similarity=0.367 Sum_probs=23.6
Q ss_pred cCCCCcHHHHHHH-HHHHHHHHHHHHHHHHH
Q 018206 238 QLEPLTEQQLIDV-CNLRQSCQQAEDALSQG 267 (359)
Q Consensus 238 ~LepLTeqQl~~I-~~LqqstqqaEdaLsq~ 267 (359)
+..|-+.+|+..+ +++.+++-..|.+|++.
T Consensus 90 ~~s~~l~~qL~~l~~~f~qr~~~lE~~L~q~ 120 (270)
T PF13990_consen 90 QYSPSLRQQLEALAEQFNQRAAHLEKALSQR 120 (270)
T ss_pred ccChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445667787664 88999999999999985
No 49
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=20.54 E-value=1.2e+02 Score=23.35 Aligned_cols=17 Identities=47% Similarity=0.657 Sum_probs=12.7
Q ss_pred HHHhHHHHHHHHHHHHHHHh
Q 018206 104 LETSRLKLVQLEQELDRARQ 123 (359)
Q Consensus 104 LE~sr~kl~qleqel~rar~ 123 (359)
+|. ||.+||+.|+.+.+
T Consensus 30 iEq---RLa~LE~rL~~ae~ 46 (60)
T PF11471_consen 30 IEQ---RLAALEQRLQAAEQ 46 (60)
T ss_pred HHH---HHHHHHHHHHHHHH
Confidence 555 88888888887764
No 50
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=20.48 E-value=2.7e+02 Score=26.13 Aligned_cols=68 Identities=13% Similarity=0.203 Sum_probs=36.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHh---------------hcccccCCCCCCCCCCCCc-cc---hHHHHHHHHHHHHHhH
Q 018206 100 YVQQLETSRLKLVQLEQELDRARQ---------------QGLYVGSGVEGVHMGFSGT-VN---SAFEMEYGHWLEEQSR 160 (359)
Q Consensus 100 yvqqLE~sr~kl~qleqel~rar~---------------qg~~~~~~~~~~~~~~~~~-~~---~~F~~~Y~~Wleeq~r 160 (359)
=|+++|. -..+||++|+|.=. +..|+++-.+...-..+++ ++ ..|-.....|...+..
T Consensus 3 ~~~~~E~---~~~~le~~l~kl~K~~~~~~d~g~~~~~a~~~F~~~l~d~~~~~~gd~~i~~~L~kF~~~l~ei~~~~~~ 79 (200)
T cd07637 3 TIDEVET---DVVEIEAKLDKLVKLCSGMIEAGKAYATTNKLFVSGIRDLSQQCKKDEMISECLDKFGDSLQEMVNYHMI 79 (200)
T ss_pred hHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777 77888888887322 2233322111111111222 22 3677777777777777
Q ss_pred HHHHHHHHHh
Q 018206 161 QICELRNALQ 170 (359)
Q Consensus 161 ~l~eLR~AL~ 170 (359)
.+.+....+.
T Consensus 80 l~~q~e~~l~ 89 (200)
T cd07637 80 LFDQAQRSVR 89 (200)
T ss_pred HHHHHHHHHH
Confidence 7766655554
Done!