BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018210
(359 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IEI|A Chain A, Crystal Structure Of Human Leucine
Carboxylmethyltransferase-1 In Complex With S-Adenosyl
Homocysteine
pdb|3IEI|B Chain B, Crystal Structure Of Human Leucine
Carboxylmethyltransferase-1 In Complex With S-Adenosyl
Homocysteine
pdb|3IEI|C Chain C, Crystal Structure Of Human Leucine
Carboxylmethyltransferase-1 In Complex With S-Adenosyl
Homocysteine
pdb|3IEI|D Chain D, Crystal Structure Of Human Leucine
Carboxylmethyltransferase-1 In Complex With S-Adenosyl
Homocysteine
pdb|3IEI|E Chain E, Crystal Structure Of Human Leucine
Carboxylmethyltransferase-1 In Complex With S-Adenosyl
Homocysteine
pdb|3IEI|F Chain F, Crystal Structure Of Human Leucine
Carboxylmethyltransferase-1 In Complex With S-Adenosyl
Homocysteine
pdb|3IEI|G Chain G, Crystal Structure Of Human Leucine
Carboxylmethyltransferase-1 In Complex With S-Adenosyl
Homocysteine
pdb|3IEI|H Chain H, Crystal Structure Of Human Leucine
Carboxylmethyltransferase-1 In Complex With S-Adenosyl
Homocysteine
pdb|3P71|T Chain T, Crystal Structure Of The Complex Of Lcmt-1 And Pp2a
Length = 334
Score = 182 bits (463), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 108/290 (37%), Positives = 157/290 (54%), Gaps = 11/290 (3%)
Query: 11 NKAAVQATNDDASASKLSCVKKGYMKDDYIHLFVR-RPVRRSPIINRGYFARWAALRRLL 69
N V+ T +DAS K V GY D YI FVR R++P INRGYFAR + +L+
Sbjct: 22 NDEGVRGTCEDASLCKRFAVSIGYWHDPYIQHFVRLSKERKAPEINRGYFARVHGVSQLI 81
Query: 70 YQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALI 129
FL +CH QI++LGAG DTT+++L+ E Y E+DF + ++K I
Sbjct: 82 KAFLR-----KTECHC--QIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSI 134
Query: 130 ETHGELKDKVGVTAS--ISQAKGEVL-GDNYKLLPVDLRDIQMLNEVINLANMDPSLPTF 186
+ L + S Q G +L Y ++ DLRD+ L E + NM+ LPT
Sbjct: 135 KCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIGADLRDLSELEEKLKKCNMNTQLPTL 194
Query: 187 IIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIRNLESRGCALLG 246
+IAECVL+Y+ P+ S ++ WA+ +F A+F YEQ++ D FGQ MI NL R C L G
Sbjct: 195 LIAECVLVYMTPEQSANLLKWAANSFERAMFINYEQVNMGDRFGQIMIENLRRRQCDLAG 254
Query: 247 INATPTLLAKEKLFLDQGWQQAVAWDMLRVYSTFINPQERRRYLLEFIFE 296
+ +L ++++ L GW+ A A DM+ +Y+ + R LEF+ E
Sbjct: 255 VETCKSLESQKERLLSNGWETASAVDMMELYNRLPRAEVSRIESLEFLDE 304
>pdb|3O7W|A Chain A, The Crystal Structure Of Human Leucine Carboxyl
Methyltransferase 1
Length = 294
Score = 151 bits (382), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 102/290 (35%), Positives = 149/290 (51%), Gaps = 35/290 (12%)
Query: 11 NKAAVQATNDDASASKLSCVKKGYMKDDYIHLFVR-RPVRRSPIINRGYFARWAALRRLL 69
N V+ T +DAS K V GY D YI FVR R++P INRGYFAR + +L+
Sbjct: 6 NDEGVRGTCEDASLCKRFAVSIGYWHDPYIQHFVRLSKERKAPEINRGYFARVHGVSQLI 65
Query: 70 YQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALI 129
FL +CH QI++LGAG DTT+++L+ E P Y E+DF + ++K I
Sbjct: 66 KAFLR-----KTECHC--QIVNLGAGMDTTFWRLKDEDLLPSKYFEVDFPMIVTRKLHSI 118
Query: 130 ETHGELKDKVGVTAS--ISQAKGEVL-GDNYKLLPVDLRDIQMLNEVINLANMDPSLPTF 186
+ L + S Q G +L Y ++ DLRD+ L E + NM+ LPT
Sbjct: 119 KCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIGADLRDLSELEEKLKKCNMNTQLPTL 178
Query: 187 IIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIRNLESRGCALLG 246
+IAECVL+Y+ P+ S ++ WA+ +F A+F YEQ++ ++LES+
Sbjct: 179 LIAECVLVYMTPEQSANLLKWAANSFERAMFINYEQVNEG--------KSLESQ------ 224
Query: 247 INATPTLLAKEKLFLDQGWQQAVAWDMLRVYSTFINPQERRRYLLEFIFE 296
KE+L L GW+ A A DM+ +Y+ + R LEF+ E
Sbjct: 225 ---------KERL-LSNGWETASAVDMMELYNRLPRAEVSRIESLEFLDE 264
>pdb|2ZW9|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZW9|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZWA|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZWA|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZZK|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZZK|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
Length = 695
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 78/300 (26%), Positives = 138/300 (46%), Gaps = 44/300 (14%)
Query: 14 AVQATNDDASASKLSC---------------VKKGYMKDDYIHLFVRRPVRRSPIINRGY 58
A+Q TN+ + ASK S + K +Y FV + ++RSP INRGY
Sbjct: 26 AIQGTNNSSIASKRSVELLYLPKLSSANNFQMDKNNKLLEYFKFFVPKKIKRSPCINRGY 85
Query: 59 FARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQL----QAEGKAPH--- 111
+ R A+R L ++ + DKK +++LG G+D FQL + + H
Sbjct: 86 WLRLFAIRSRLNSIIE-QTPQDKKI----VVVNLGCGYDPLPFQLLDTNNIQSQQYHDRV 140
Query: 112 LYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLL--------PVD 163
++++D+ ++ K LI+T EL +G +S+ K V N L P D
Sbjct: 141 SFIDIDYSDLLKIKIELIKTIPELSKIIG----LSEDKDYVDDSNVDFLTTPKYLARPCD 196
Query: 164 LRDIQMLNEVINLANM-DPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQ 222
L D +M + ++N + DP++ +AE L Y+ P+ S +I+ SK + F + EQ
Sbjct: 197 LNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSK-MENSHFIILEQ 255
Query: 223 IHPD---DAFGQQMIRNLESRGCALLGINATPTLLAKEKLFLDQGWQQAVAWDMLRVYST 279
+ P + F +QM+ + + L + T+ ++ + F G+ DM +++ +
Sbjct: 256 LIPKGPFEPFSKQMLAHFKRNDSPLQSVLKYNTIESQVQRFNKLGFAYVNVGDMFQLWES 315
>pdb|2OB1|A Chain A, Ppm1 With 1,8-Ans
pdb|2OB1|B Chain B, Ppm1 With 1,8-Ans
pdb|2OB1|C Chain C, Ppm1 With 1,8-Ans
Length = 319
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 120/259 (46%), Gaps = 34/259 (13%)
Query: 44 VRRPVRRS-PIINRGYFARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQ 102
V + +R S P++N G + R + + +FL + K Q+++LG G D
Sbjct: 54 VDKAMRSSFPVMNYGTYLRTVGIDAAILEFL--------VANEKVQVVNLGCGSDLRMLP 105
Query: 103 LQAEGKAPHL-YVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDN--YKL 159
L PHL YV++D+ E K +++ L+ +G++ AK L D YKL
Sbjct: 106 LLQ--MFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKE-DTAKSPFLIDQGRYKL 162
Query: 160 LPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFL 219
DL DI ++++ +PT +I+EC+L Y+ + S+ ++ FS ++
Sbjct: 163 AACDLNDITETTRLLDVCT-KREIPTIVISECLLCYMHNNESQLLINTIMSKFSHGLWIS 221
Query: 220 YEQI---HPDDAFGQQMIRNL-ESRGCALLGINATPTLL---AKEKLFLDQGWQQA---V 269
Y+ I P+D FG M NL ESR + PTL+ +KEK W A +
Sbjct: 222 YDPIGGSQPNDRFGAIMQSNLKESRNLEM------PTLMTYNSKEK--YASRWSAAPNVI 273
Query: 270 AWDMLRVYSTFINPQERRR 288
DM +++ I ER+R
Sbjct: 274 VNDMWEIFNAQIPESERKR 292
>pdb|1RJD|A Chain A, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJD|B Chain B, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJD|C Chain C, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJE|A Chain A, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJE|B Chain B, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJE|C Chain C, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJF|A Chain A, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJF|B Chain B, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJF|C Chain C, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJG|A Chain A, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
Length = 334
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 120/259 (46%), Gaps = 34/259 (13%)
Query: 44 VRRPVRRS-PIINRGYFARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQ 102
V + +R S P++N G + R + + +FL + K Q+++LG G D
Sbjct: 63 VDKAMRSSFPVMNYGTYLRTVGIDAAILEFL--------VANEKVQVVNLGCGSDLRMLP 114
Query: 103 LQAEGKAPHL-YVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDN--YKL 159
L PHL YV++D+ E K +++ L+ +G++ AK L D YKL
Sbjct: 115 LLQ--MFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKE-DTAKSPFLIDQGRYKL 171
Query: 160 LPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFL 219
DL DI ++++ +PT +I+EC+L Y+ + S+ ++ FS ++
Sbjct: 172 AACDLNDITETTRLLDVCT-KREIPTIVISECLLCYMHNNESQLLINTIMSKFSHGLWIS 230
Query: 220 YEQI---HPDDAFGQQMIRNL-ESRGCALLGINATPTLL---AKEKLFLDQGWQQA---V 269
Y+ I P+D FG M NL ESR + PTL+ +KEK W A +
Sbjct: 231 YDPIGGSQPNDRFGAIMQSNLKESRNLEM------PTLMTYNSKEK--YASRWSAAPNVI 282
Query: 270 AWDMLRVYSTFINPQERRR 288
DM +++ I ER+R
Sbjct: 283 VNDMWEIFNAQIPESERKR 301
>pdb|2WOJ|A Chain A, Adp-Alf4 Complex Of S. Cerevisiae Get3
pdb|2WOJ|B Chain B, Adp-Alf4 Complex Of S. Cerevisiae Get3
pdb|2WOJ|C Chain C, Adp-Alf4 Complex Of S. Cerevisiae Get3
pdb|2WOJ|D Chain D, Adp-Alf4 Complex Of S. Cerevisiae Get3
pdb|3H84|A Chain A, Crystal Structure Of Get3
pdb|3H84|B Chain B, Crystal Structure Of Get3
pdb|3ZS8|A Chain A, S. Cerevisiae Get3 Complexed With A Cytosolic Get1
Fragment
pdb|3ZS8|B Chain B, S. Cerevisiae Get3 Complexed With A Cytosolic Get1
Fragment
pdb|3ZS9|A Chain A, S. Cerevisiae Get3-Adp-Alf4- Complex With A Cytosolic Get2
Fragment
pdb|3ZS9|B Chain B, S. Cerevisiae Get3-Adp-Alf4- Complex With A Cytosolic Get2
Fragment
Length = 354
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 15/111 (13%)
Query: 84 HTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTA 143
H K+Q G FDT F G L F+++ + + L+E GE+ +K+G
Sbjct: 148 HIKRQEQGEGETFDTVIFDTAPTGHT------LRFLQLPNTLSKLLEKFGEITNKLGPML 201
Query: 144 SISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLI 194
+ G V + L +++ E I DP L TF+ CV I
Sbjct: 202 NSFMGAGNV------DISGKLNELKANVETIRQQFTDPDLTTFV---CVCI 243
>pdb|3IDQ|A Chain A, Crystal Structure Of S. Cerevisiae Get3 At 3.7 Angstrom
Resolution
Length = 369
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 15/111 (13%)
Query: 84 HTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTA 143
H K+Q G FDT F G L F+++ + + L+E GE+ +K+G
Sbjct: 148 HIKRQEQGEGETFDTVIFDTAPTGHT------LRFLQLPNTLSKLLEKFGEITNKLGPML 201
Query: 144 SISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLI 194
+ G V + L +++ E I DP L TF+ CV I
Sbjct: 202 NSFMGAGNV------DISGKLNELKANVETIRQQFTDPDLTTFV---CVCI 243
>pdb|3SJA|A Chain A, Crystal Structure Of S. Cerevisiae Get3 In The Open State
In Complex With Get1 Cytosolic Domain
pdb|3SJA|B Chain B, Crystal Structure Of S. Cerevisiae Get3 In The Open State
In Complex With Get1 Cytosolic Domain
pdb|3SJA|E Chain E, Crystal Structure Of S. Cerevisiae Get3 In The Open State
In Complex With Get1 Cytosolic Domain
pdb|3SJA|F Chain F, Crystal Structure Of S. Cerevisiae Get3 In The Open State
In Complex With Get1 Cytosolic Domain
pdb|3SJA|I Chain I, Crystal Structure Of S. Cerevisiae Get3 In The Open State
In Complex With Get1 Cytosolic Domain
pdb|3SJB|A Chain A, Crystal Structure Of S. Cerevisiae Get3 In The Open State
In Complex With Get1 Cytosolic Domain
pdb|3SJB|B Chain B, Crystal Structure Of S. Cerevisiae Get3 In The Open State
In Complex With Get1 Cytosolic Domain
pdb|3SJC|A Chain A, Crystal Structure Of S.Cerevisiae Get3 In The Semi-Open
State In Complex With Get1 Cytosolic Domain
pdb|3SJC|B Chain B, Crystal Structure Of S.Cerevisiae Get3 In The Semi-Open
State In Complex With Get1 Cytosolic Domain
pdb|3SJC|E Chain E, Crystal Structure Of S.Cerevisiae Get3 In The Semi-Open
State In Complex With Get1 Cytosolic Domain
pdb|3SJC|F Chain F, Crystal Structure Of S.Cerevisiae Get3 In The Semi-Open
State In Complex With Get1 Cytosolic Domain
pdb|3SJD|A Chain A, Crystal Structure Of S. Cerevisiae Get3 With Bound
Adp-Mg2+ In Complex With Get2 Cytosolic Domain
pdb|3SJD|B Chain B, Crystal Structure Of S. Cerevisiae Get3 With Bound
Adp-Mg2+ In Complex With Get2 Cytosolic Domain
pdb|3SJD|C Chain C, Crystal Structure Of S. Cerevisiae Get3 With Bound
Adp-Mg2+ In Complex With Get2 Cytosolic Domain
Length = 362
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 15/111 (13%)
Query: 84 HTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTA 143
H K+Q G FDT F G L F+++ + + L+E GE+ +K+G
Sbjct: 148 HIKRQEQGEGETFDTVIFDTAPTGHT------LRFLQLPNTLSKLLEKFGEITNKLGPML 201
Query: 144 SISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLI 194
+ G V + L +++ E I DP L TF+ CV I
Sbjct: 202 NSFMGAGNV------DISGKLNELKANVETIRQQFTDPDLTTFV---CVCI 243
>pdb|3VLC|A Chain A, Crystal Structure Of S. Cerevisiae Get3 In The Semi Open
Conformation In Complex With Get1 Cytosolic Domain At
4.5 Angstrom Resolution
Length = 354
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 15/111 (13%)
Query: 84 HTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTA 143
H K+Q G FDT F G L F+++ + + L+E GE+ +K+G
Sbjct: 148 HIKRQEQDEGETFDTVIFDTAPTGHT------LRFLQLPNTLSKLLEKFGEITNKLGPML 201
Query: 144 SISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLI 194
+ G V + L +++ E I DP L TF+ CV I
Sbjct: 202 NSFMGAGNV------DISGKLNELKANVETIRQQFTDPDLTTFV---CVCI 243
>pdb|3A36|A Chain A, Structural Insight Into The Membrane Insertion Of Tail-
Anchored Proteins By Get3
pdb|3A36|B Chain B, Structural Insight Into The Membrane Insertion Of Tail-
Anchored Proteins By Get3
pdb|3A37|A Chain A, Structural Insight Into The Membrane Insertion Of Tail-
Anchored Proteins By Get3
pdb|3A37|B Chain B, Structural Insight Into The Membrane Insertion Of Tail-
Anchored Proteins By Get3
pdb|3B2E|A Chain A, Crystal Structure Of S. Cerevisiae Get3 In The Open
Conformation In Complex With Get1 Cytosolic Domain
pdb|3B2E|B Chain B, Crystal Structure Of S. Cerevisiae Get3 In The Open
Conformation In Complex With Get1 Cytosolic Domain
pdb|3B2E|C Chain C, Crystal Structure Of S. Cerevisiae Get3 In The Open
Conformation In Complex With Get1 Cytosolic Domain
pdb|3B2E|D Chain D, Crystal Structure Of S. Cerevisiae Get3 In The Open
Conformation In Complex With Get1 Cytosolic Domain
Length = 362
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 15/111 (13%)
Query: 84 HTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTA 143
H K+Q G FDT F G L F+++ + + L+E GE+ +K+G
Sbjct: 148 HIKRQEQDEGETFDTVIFDTAPTGHT------LRFLQLPNTLSKLLEKFGEITNKLGPML 201
Query: 144 SISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLI 194
+ G V + L +++ E I DP L TF+ CV I
Sbjct: 202 NSFMGAGNV------DISGKLNELKANVETIRQQFTDPDLTTFV---CVCI 243
>pdb|2EC2|A Chain A, Crystal Structure Of Transposase From Sulfolobus Tokodaii
pdb|2EC2|B Chain B, Crystal Structure Of Transposase From Sulfolobus Tokodaii
pdb|2EC2|C Chain C, Crystal Structure Of Transposase From Sulfolobus Tokodaii
pdb|2EC2|D Chain D, Crystal Structure Of Transposase From Sulfolobus Tokodaii
pdb|2EC2|E Chain E, Crystal Structure Of Transposase From Sulfolobus Tokodaii
pdb|2EC2|F Chain F, Crystal Structure Of Transposase From Sulfolobus Tokodaii
Length = 136
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 38 DYIHLFVRRPVRRSPIINRGYFARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFD 97
D+IHLFV P R +P YF +A R +L +F + + K T+ +S
Sbjct: 59 DHIHLFVNCPPRYAPSYLANYFKGKSA-RLILKKFQELKKSTNGKLWTRSYFVSTSGNVS 117
Query: 98 T 98
+
Sbjct: 118 S 118
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,214,229
Number of Sequences: 62578
Number of extensions: 411027
Number of successful extensions: 959
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 946
Number of HSP's gapped (non-prelim): 13
length of query: 359
length of database: 14,973,337
effective HSP length: 100
effective length of query: 259
effective length of database: 8,715,537
effective search space: 2257324083
effective search space used: 2257324083
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)