Query 018210
Match_columns 359
No_of_seqs 230 out of 1343
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 07:04:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018210.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018210hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2918 Carboxymethyl transfer 100.0 7E-82 1.5E-86 591.2 23.2 300 9-321 17-321 (335)
2 TIGR00027 mthyl_TIGR00027 meth 100.0 5.8E-41 1.3E-45 317.1 23.4 230 17-280 2-257 (260)
3 COG3315 O-Methyltransferase in 100.0 2.3E-38 4.9E-43 304.1 21.2 238 10-279 9-271 (297)
4 PF04072 LCM: Leucine carboxyl 100.0 8.4E-38 1.8E-42 281.0 7.0 165 19-209 1-183 (183)
5 PF04672 Methyltransf_19: S-ad 98.3 2.9E-06 6.2E-11 80.4 9.9 157 85-269 68-233 (267)
6 TIGR00740 methyltransferase, p 97.7 0.0042 9.1E-08 57.8 18.7 153 86-269 54-224 (239)
7 PRK15451 tRNA cmo(5)U34 methyl 97.3 0.024 5.2E-07 53.2 17.4 153 86-269 57-227 (247)
8 TIGR02716 C20_methyl_CrtF C-20 97.2 0.022 4.7E-07 55.1 17.2 151 86-270 150-304 (306)
9 PTZ00098 phosphoethanolamine N 97.0 0.044 9.5E-07 52.0 16.7 156 86-281 53-211 (263)
10 TIGR00452 methyltransferase, p 96.8 0.02 4.3E-07 56.0 12.8 152 86-275 122-276 (314)
11 PRK11036 putative S-adenosyl-L 96.4 0.16 3.4E-06 47.7 15.8 192 37-272 7-207 (255)
12 PRK15068 tRNA mo(5)U34 methylt 96.3 0.16 3.4E-06 49.8 15.1 151 87-274 124-276 (322)
13 PF00891 Methyltransf_2: O-met 95.9 0.047 1E-06 50.7 9.0 101 86-226 101-204 (241)
14 TIGR02752 MenG_heptapren 2-hep 95.8 0.59 1.3E-05 42.8 15.8 153 87-271 47-217 (231)
15 PLN02233 ubiquinone biosynthes 95.7 0.99 2.1E-05 42.7 17.4 158 86-272 74-248 (261)
16 TIGR02021 BchM-ChlM magnesium 95.6 0.5 1.1E-05 43.1 14.6 149 86-271 56-205 (219)
17 PF12147 Methyltransf_20: Puta 95.5 0.92 2E-05 43.9 16.1 176 59-267 113-293 (311)
18 PLN02336 phosphoethanolamine N 95.3 0.3 6.4E-06 50.1 13.2 153 86-279 267-421 (475)
19 PLN02490 MPBQ/MSBQ methyltrans 95.2 0.52 1.1E-05 46.6 14.1 145 87-276 115-260 (340)
20 PLN02244 tocopherol O-methyltr 94.8 2.5 5.4E-05 41.6 17.6 153 86-274 119-280 (340)
21 PRK07580 Mg-protoporphyrin IX 94.6 2 4.4E-05 39.0 15.5 150 86-272 64-214 (230)
22 TIGR03587 Pse_Me-ase pseudamin 94.1 1.2 2.6E-05 40.6 12.9 103 86-225 44-146 (204)
23 PF01209 Ubie_methyltran: ubiE 94.1 1.1 2.4E-05 41.8 12.7 154 86-271 48-219 (233)
24 PF03848 TehB: Tellurite resis 94.0 0.57 1.2E-05 42.6 10.1 104 86-223 31-134 (192)
25 PLN03075 nicotianamine synthas 93.8 1.8 3.9E-05 42.0 13.8 155 33-221 76-232 (296)
26 PF08003 Methyltransf_9: Prote 93.3 0.73 1.6E-05 44.8 10.1 163 86-289 116-279 (315)
27 PLN02585 magnesium protoporphy 93.1 5.8 0.00012 38.8 16.4 147 86-270 145-297 (315)
28 PF13649 Methyltransf_25: Meth 92.7 0.27 5.9E-06 39.0 5.4 95 89-214 1-99 (101)
29 PRK14103 trans-aconitate 2-met 92.3 6.2 0.00013 36.8 15.0 142 86-268 30-180 (255)
30 PLN02396 hexaprenyldihydroxybe 92.3 6.9 0.00015 38.4 15.7 177 60-271 107-288 (322)
31 PRK11873 arsM arsenite S-adeno 92.3 6.1 0.00013 37.2 14.9 149 86-270 78-228 (272)
32 TIGR03438 probable methyltrans 91.7 5.9 0.00013 38.2 14.4 111 86-221 64-176 (301)
33 PF06080 DUF938: Protein of un 91.4 4.2 9.1E-05 37.4 12.1 177 64-275 13-195 (204)
34 PRK11207 tellurite resistance 91.0 3.8 8.2E-05 36.9 11.6 106 87-226 32-139 (197)
35 PF13489 Methyltransf_23: Meth 90.9 6.1 0.00013 33.2 12.3 151 64-269 8-160 (161)
36 smart00828 PKS_MT Methyltransf 90.2 7.2 0.00016 35.4 12.8 150 88-281 2-153 (224)
37 PLN02336 phosphoethanolamine N 90.1 4.1 8.9E-05 41.7 12.2 105 87-223 39-144 (475)
38 TIGR01934 MenG_MenH_UbiE ubiqu 89.5 15 0.00032 32.8 17.2 153 86-272 40-210 (223)
39 PRK06202 hypothetical protein; 89.3 17 0.00037 33.3 15.0 150 86-270 61-220 (232)
40 TIGR00477 tehB tellurite resis 88.8 10 0.00022 34.1 12.5 104 86-224 31-136 (195)
41 PF12847 Methyltransf_18: Meth 88.5 6.4 0.00014 31.1 9.9 105 87-221 3-110 (112)
42 PF03291 Pox_MCEL: mRNA cappin 87.5 2.9 6.2E-05 41.3 8.6 207 86-315 63-325 (331)
43 KOG2361 Predicted methyltransf 87.4 1 2.2E-05 42.5 4.9 153 88-269 74-234 (264)
44 cd02440 AdoMet_MTases S-adenos 86.8 9.6 0.00021 28.3 9.7 101 89-220 2-102 (107)
45 COG4106 Tam Trans-aconitate me 86.3 4 8.8E-05 38.0 8.2 137 86-264 31-178 (257)
46 PRK12335 tellurite resistance 86.3 6.8 0.00015 37.5 10.3 104 86-224 121-226 (287)
47 PF13847 Methyltransf_31: Meth 85.8 17 0.00036 30.9 11.6 107 86-223 4-112 (152)
48 PF02353 CMAS: Mycolic acid cy 85.4 35 0.00076 32.6 15.0 169 64-278 46-223 (273)
49 PRK05134 bifunctional 3-demeth 83.6 35 0.00075 31.1 13.7 151 86-271 49-204 (233)
50 KOG4300 Predicted methyltransf 83.4 13 0.00028 34.5 10.0 119 85-236 76-197 (252)
51 KOG1975 mRNA cap methyltransfe 83.2 31 0.00066 34.2 13.0 194 50-284 93-329 (389)
52 PRK00216 ubiE ubiquinone/menaq 82.7 36 0.00078 30.6 16.8 155 87-272 53-225 (239)
53 PF08241 Methyltransf_11: Meth 82.4 18 0.0004 27.0 9.8 93 91-219 2-94 (95)
54 TIGR01983 UbiG ubiquinone bios 82.0 38 0.00083 30.4 15.9 152 86-271 46-202 (224)
55 PLN02366 spermidine synthase 79.6 21 0.00046 34.8 10.8 45 86-131 92-137 (308)
56 smart00138 MeTrc Methyltransfe 79.0 21 0.00045 33.8 10.4 56 155-220 185-240 (264)
57 PLN02232 ubiquinone biosynthes 77.7 11 0.00025 32.6 7.6 104 155-270 26-145 (160)
58 COG2230 Cfa Cyclopropane fatty 77.6 58 0.0013 31.5 12.9 149 87-276 74-227 (283)
59 PRK00536 speE spermidine synth 77.1 23 0.0005 33.8 10.0 118 86-214 73-194 (262)
60 TIGR03439 methyl_EasF probable 76.8 55 0.0012 32.1 12.8 117 86-224 77-201 (319)
61 PRK08317 hypothetical protein; 75.8 59 0.0013 29.0 17.0 145 86-270 20-174 (241)
62 PRK00811 spermidine synthase; 75.6 32 0.0007 32.9 10.8 122 86-215 77-215 (283)
63 PRK00121 trmB tRNA (guanine-N( 74.8 37 0.00081 30.6 10.5 127 86-242 41-174 (202)
64 PF05401 NodS: Nodulation prot 73.7 42 0.0009 30.8 10.2 100 86-220 44-144 (201)
65 PRK11705 cyclopropane fatty ac 70.8 39 0.00084 34.0 10.4 148 87-279 169-319 (383)
66 PF03059 NAS: Nicotianamine sy 70.7 46 0.00099 32.1 10.4 107 86-221 121-229 (276)
67 PRK01683 trans-aconitate 2-met 66.2 1.1E+02 0.0024 28.2 19.0 141 86-267 32-182 (258)
68 PRK06922 hypothetical protein; 61.7 2.4E+02 0.0051 30.7 14.4 175 86-290 419-625 (677)
69 COG4262 Predicted spermidine s 61.1 26 0.00057 35.2 6.7 118 85-210 289-426 (508)
70 PF01564 Spermine_synth: Sperm 60.5 43 0.00094 31.4 8.0 120 86-213 77-213 (246)
71 TIGR02072 BioC biotin biosynth 59.9 1.3E+02 0.0028 26.9 16.8 139 86-269 35-173 (240)
72 PRK05785 hypothetical protein; 59.4 1.4E+02 0.0031 27.3 12.7 135 87-264 53-204 (226)
73 TIGR00417 speE spermidine synt 57.1 1.4E+02 0.0029 28.2 10.9 44 86-130 73-117 (270)
74 PHA03412 putative methyltransf 56.9 11 0.00024 35.5 3.2 34 87-120 194-228 (241)
75 COG0421 SpeE Spermidine syntha 56.6 1E+02 0.0022 29.7 9.9 121 86-214 77-213 (282)
76 PTZ00146 fibrillarin; Provisio 56.1 2E+02 0.0044 27.9 12.7 134 87-273 134-272 (293)
77 PF07109 Mg-por_mtran_C: Magne 53.6 92 0.002 25.2 7.6 72 192-270 4-80 (97)
78 PRK10258 biotin biosynthesis p 52.5 1.9E+02 0.0041 26.5 16.3 138 86-266 43-181 (251)
79 TIGR03840 TMPT_Se_Te thiopurin 51.4 1.9E+02 0.0042 26.3 12.3 115 87-222 36-152 (213)
80 COG4301 Uncharacterized conser 51.0 2.4E+02 0.0051 27.2 11.4 126 86-238 79-225 (321)
81 KOG0406 Glutathione S-transfer 50.6 78 0.0017 29.7 7.8 72 156-239 34-105 (231)
82 KOG3178 Hydroxyindole-O-methyl 50.3 1.1E+02 0.0024 30.4 9.1 139 86-270 178-328 (342)
83 PF05185 PRMT5: PRMT5 arginine 49.9 95 0.0021 32.0 9.0 121 61-212 162-287 (448)
84 TIGR00091 tRNA (guanine-N(7)-) 48.8 1.9E+02 0.0042 25.6 13.9 126 86-241 17-149 (194)
85 smart00650 rADc Ribosomal RNA 48.4 1.8E+02 0.0039 25.1 9.7 58 86-167 14-71 (169)
86 PRK15128 23S rRNA m(5)C1962 me 45.6 3.4E+02 0.0073 27.4 13.7 150 56-245 202-365 (396)
87 PHA03411 putative methyltransf 45.6 13 0.00028 35.8 1.8 33 88-120 207-240 (279)
88 TIGR03534 RF_mod_PrmC protein- 43.2 2.5E+02 0.0055 25.4 14.4 31 87-118 89-119 (251)
89 PRK11783 rlmL 23S rRNA m(2)G24 41.6 2.6E+02 0.0056 30.5 11.3 82 55-166 519-600 (702)
90 PF07283 TrbH: Conjugal transf 41.2 64 0.0014 27.1 5.2 46 200-246 8-54 (121)
91 PRK05904 coproporphyrinogen II 40.4 1.8E+02 0.0039 28.7 9.2 60 182-243 56-115 (353)
92 PLN02781 Probable caffeoyl-CoA 40.0 3E+02 0.0066 25.3 12.3 110 86-224 69-180 (234)
93 TIGR00438 rrmJ cell division p 39.8 2.6E+02 0.0056 24.5 11.2 107 86-224 33-148 (188)
94 COG0635 HemN Coproporphyrinoge 36.7 2.1E+02 0.0045 29.2 9.0 61 181-243 86-149 (416)
95 PRK13255 thiopurine S-methyltr 36.6 3.4E+02 0.0073 24.8 12.5 111 87-216 39-149 (218)
96 PRK07379 coproporphyrinogen II 35.0 2.6E+02 0.0056 28.1 9.4 87 181-269 65-169 (400)
97 PRK11188 rrmJ 23S rRNA methylt 34.9 3.4E+02 0.0075 24.5 12.5 102 87-220 53-163 (209)
98 PRK13883 conjugal transfer pro 34.1 1E+02 0.0022 27.0 5.5 45 200-245 36-81 (151)
99 PF01739 CheR: CheR methyltran 32.8 53 0.0011 29.8 3.7 57 154-220 117-173 (196)
100 PF08242 Methyltransf_12: Meth 31.8 45 0.00099 25.7 2.7 31 185-217 68-98 (99)
101 TIGR02081 metW methionine bios 31.3 3.6E+02 0.0079 23.6 14.4 141 87-270 15-165 (194)
102 PRK10611 chemotaxis methyltran 30.3 47 0.001 32.1 3.1 35 186-220 226-260 (287)
103 PF14965 BRI3BP: Negative regu 30.1 68 0.0015 28.7 3.7 33 170-210 50-82 (177)
104 PLN02823 spermine synthase 29.5 4.2E+02 0.0092 26.1 9.7 122 86-215 104-246 (336)
105 COG2263 Predicted RNA methylas 28.2 1.3E+02 0.0029 27.4 5.3 118 87-270 47-166 (198)
106 PF05175 MTS: Methyltransferas 27.6 3.2E+02 0.0069 23.6 7.7 44 86-130 32-77 (170)
107 PRK13347 coproporphyrinogen II 26.9 4.7E+02 0.01 26.7 9.8 85 182-268 103-205 (453)
108 KOG1500 Protein arginine N-met 25.8 3.1E+02 0.0068 27.5 7.7 77 86-194 178-254 (517)
109 COG3580 Uncharacterized protei 25.6 83 0.0018 30.9 3.7 46 69-120 264-314 (351)
110 PLN02589 caffeoyl-CoA O-methyl 25.5 5.7E+02 0.012 24.0 10.5 110 86-224 80-192 (247)
111 PRK05660 HemN family oxidoredu 24.7 3.2E+02 0.0069 27.2 8.0 86 181-268 57-160 (378)
112 PRK08446 coproporphyrinogen II 24.6 3.5E+02 0.0077 26.5 8.2 60 182-243 51-110 (350)
113 PF06180 CbiK: Cobalt chelatas 24.4 3E+02 0.0065 26.2 7.3 114 157-270 75-202 (262)
114 KOG1540 Ubiquinone biosynthesi 23.0 7E+02 0.015 24.2 13.3 153 86-269 101-278 (296)
115 PRK14968 putative methyltransf 22.9 4.8E+02 0.01 22.2 15.6 42 87-130 25-66 (188)
116 PF07091 FmrO: Ribosomal RNA m 20.5 1.1E+02 0.0024 29.0 3.5 44 86-131 106-151 (251)
117 PF08557 Lipid_DES: Sphingolip 20.5 83 0.0018 21.1 1.9 33 109-142 4-36 (39)
118 TIGR00539 hemN_rel putative ox 20.0 7.7E+02 0.017 24.1 9.6 40 182-221 51-92 (360)
No 1
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7e-82 Score=591.16 Aligned_cols=300 Identities=36% Similarity=0.629 Sum_probs=278.0
Q ss_pred cCCcCcHHHHHHHHHHHhhcCCCCCCCCCHhHHHHHc-CCCCCCcccccchhHHHHHHHHHHHHHHhcCCCCCCcCCCcc
Q 018210 9 QSNKAAVQATNDDASASKLSCVKKGYMKDDYIHLFVR-RPVRRSPIINRGYFARWAALRRLLYQFLDCGSDGDKKCHTKK 87 (359)
Q Consensus 9 ~~~d~~V~~Ta~~a~~~R~Sa~~~gy~~Dp~a~~fv~-~~~rr~P~inrG~~~R~~~id~~i~~Fl~~~~~~~~~~~~~~ 87 (359)
...|.+||+||++++.||+++.+.||+.|||+..|+. +..||+|.||||||+|+.+||..|..||+... +++
T Consensus 17 ~~~d~~vq~Tnddss~ck~~~~~~gy~~d~~~~~~~~~~~~rr~P~inRGy~~R~~aI~~~v~~Fl~~~~-------~~~ 89 (335)
T KOG2918|consen 17 KSADSAVQGTNDDSSLCKRSATKSGYWHDPFIKLFVPSKKARRAPEINRGYWARTMAIRHAVRAFLEQTD-------GKK 89 (335)
T ss_pred cCcchhhhhccchhhhhhhHHHhcCCccCchhhhhccccccCCCceecchhhHHHHHHHHHHHHHHHhcC-------Cce
Confidence 4678899999999999999999999999999999998 56789999999999999999999999999965 389
Q ss_pred eEEEeCCCCchhhhhhccCC-CCCcEEEEecchhHHHHHHHHHhhcccc---cccccccccccccCCCccCCCeEEEecc
Q 018210 88 QILSLGAGFDTTYFQLQAEG-KAPHLYVELDFIEVTSKKAALIETHGEL---KDKVGVTASISQAKGEVLGDNYKLLPVD 163 (359)
Q Consensus 88 QVV~LGAGlDTr~fRL~~~~-~~~~~~~EvD~p~vi~~K~~~i~~~~~l---~~~~g~~~~~~~~~~~~~s~~y~lv~~D 163 (359)
||||||||+||++|||.+.+ ..++.|+|||||+++++|..++.+.+.+ ..+.+++ ....+++.+++.+|+++|||
T Consensus 90 qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD-~~~~s~~~l~s~~Y~~~g~D 168 (335)
T KOG2918|consen 90 QIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDED-VVDLSGTDLHSGRYHLIGCD 168 (335)
T ss_pred EEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhcccccc-ccccCcceeccCceeeeccc
Confidence 99999999999999999875 5789999999999999999555554442 2222333 34556668999999999999
Q ss_pred CCCchhHHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHhcCCCceEEeeeccCCCCHHHHHHHHHHHHcCCC
Q 018210 164 LRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIRNLESRGCA 243 (359)
Q Consensus 164 L~~~~~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~~~s~i~ye~i~p~d~Fg~~m~~~l~~~g~~ 243 (359)
|||++.++++|..+++|.+.|||||+||||+||+|+++..||+|+++.|+++.+|+|||++|+|+||++|++||++||+|
T Consensus 169 Lrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~a~fv~YEQi~~~D~Fg~vM~~nlk~r~~~ 248 (335)
T KOG2918|consen 169 LRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFENAHFVNYEQINPNDRFGKVMLANLKRRGCP 248 (335)
T ss_pred hhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCCcccEEEEeccCCCChHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCChhHHHHHHHhCCCceeeeccHHHHHhcCCCHHHHHhhhhccCCcCCCCChhcHHHHhhCcEEEEEEecc
Q 018210 244 LLGINATPTLLAKEKLFLDQGWQQAVAWDMLRVYSTFINPQERRRYLLEFIFESVSDNLIQKFSMLDGRYELIIDCLA 321 (359)
Q Consensus 244 l~gi~~y~t~~~~~~r~~~~Gw~~~~~~d~~~~y~~~l~~~er~Ri~~lE~fDE~~~~~~Ee~~l~~~HY~i~~a~~~ 321 (359)
|+|+..|+|+|+|.+||.++||+.+.+.||+++|+.++|.+||+|+++||+|||+ |||+++|+||||++|++.
T Consensus 249 L~gle~y~s~Esq~~Rf~~~Gw~~v~a~Dm~ei~n~~lp~~Ek~rie~lE~lDE~-----Eel~~l~~HYcL~~A~~~ 321 (335)
T KOG2918|consen 249 LHGLETYNSIESQRSRFLKAGWEYVIAVDMNEIYNFSLPEAEKKRIESLEPLDEL-----EELHLLCQHYCLCHATKG 321 (335)
T ss_pred CchhhhcccHHHHHHHHHhcCCceeehhhHHHHHHhhCCHHHHHHHhhcccchhH-----HHHHHHHHHheeeeeecc
Confidence 9999999999999999999999999999999999989999999999999999999 999999999999999864
No 2
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=100.00 E-value=5.8e-41 Score=317.12 Aligned_cols=230 Identities=19% Similarity=0.263 Sum_probs=190.6
Q ss_pred HHHHHHHHHhh--cCCCCCCCCCHhHHHHHcCCCC------------------CCcccccchhHHHHHHHHHHHHHHhcC
Q 018210 17 ATNDDASASKL--SCVKKGYMKDDYIHLFVRRPVR------------------RSPIINRGYFARWAALRRLLYQFLDCG 76 (359)
Q Consensus 17 ~Ta~~a~~~R~--Sa~~~gy~~Dp~a~~fv~~~~r------------------r~P~inrG~~~R~~~id~~i~~Fl~~~ 76 (359)
.|+..+++.|+ |.+++++|+||||..|+++... ..|.+..+..+|++.||..+.+|++++
T Consensus 2 ~Tal~~a~~RA~es~r~~~l~~Dp~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rtr~~D~~i~~~~~~g 81 (260)
T TIGR00027 2 RTALGVAAARAIETQRPDRLFRDPYAAAFLGAAGRAAMPLDGLLRADAGAYDGLLGGFADFIAVRTRFFDDFLLAAVAAG 81 (260)
T ss_pred hHHHHHHHHHHHHhCCCCcCcCChHHHHHhchhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 69999999999 7788899999999999976432 012234456789999999999999754
Q ss_pred CCCCCcCCCcceEEEeCCCCchhhhhhccCCCCCcEEEEecchhHHHHHHHHHhhcccccccccccccccccCCCccCCC
Q 018210 77 SDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDN 156 (359)
Q Consensus 77 ~~~~~~~~~~~QVV~LGAGlDTr~fRL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~~~s~~ 156 (359)
..||||||||+|||+|||.++ .+++|||||+|+|++.|+++|+++. ..++++
T Consensus 82 ---------~~qvV~LGaGlDTr~~Rl~~~--~~~~~~EvD~P~v~~~K~~~l~~~~-----------------~~~~~~ 133 (260)
T TIGR00027 82 ---------IRQVVILGAGLDTRAYRLPWP--DGTRVFEVDQPAVLAFKEKVLAELG-----------------AEPPAH 133 (260)
T ss_pred ---------CcEEEEeCCccccHHHhcCCC--CCCeEEECCChHHHHHHHHHHHHcC-----------------CCCCCc
Confidence 479999999999999999887 5799999999999999999999852 223789
Q ss_pred eEEEeccCCCchhHHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHhcCCCceEEeeeccCCCCH-----HHH
Q 018210 157 YKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDA-----FGQ 231 (359)
Q Consensus 157 y~lv~~DL~~~~~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~~~s~i~ye~i~p~d~-----Fg~ 231 (359)
|++|++||+ ++|.+.|..+|+|++.||+||+|||+|||++++++++|+++++.+++||.+++|++.+.+. +++
T Consensus 134 ~~~v~~Dl~--~~w~~~L~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~~~~~~~~~~~~ 211 (260)
T TIGR00027 134 RRAVPVDLR--QDWPAALAAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRPLDGEWRAGMRA 211 (260)
T ss_pred eEEeccCch--hhHHHHHHhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccccchhHHHHHHH
Confidence 999999999 3799999999999999999999999999999999999999999998999999999987432 344
Q ss_pred HHHHHHH-HcCCCCCCCCCCCChhHHHHHHHhCCCceeeeccHHHHHhcC
Q 018210 232 QMIRNLE-SRGCALLGINATPTLLAKEKLFLDQGWQQAVAWDMLRVYSTF 280 (359)
Q Consensus 232 ~m~~~l~-~~g~~l~gi~~y~t~~~~~~r~~~~Gw~~~~~~d~~~~y~~~ 280 (359)
.|.+... ..+.+|.. ..++++..++|..+||+.... +..++-.+|
T Consensus 212 ~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~Gw~~~~~-~~~e~~~~y 257 (260)
T TIGR00027 212 PVYHAARGVDGSGLVF---GIDRADVAEWLAERGWRASEH-TPGELARRY 257 (260)
T ss_pred HHHHhhhccccccccc---CCChhhHHHHHHHCCCeeecC-CHHHHHHHh
Confidence 4444333 45666652 235788899999999998877 776665443
No 3
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.3e-38 Score=304.08 Aligned_cols=238 Identities=21% Similarity=0.266 Sum_probs=189.5
Q ss_pred CCcCcHHHHHHHHHHHhh--cCCCCCCCCCHhHHHHHcCCC---CCC--ccc--------cc--chhHHHHHHHHHHHHH
Q 018210 10 SNKAAVQATNDDASASKL--SCVKKGYMKDDYIHLFVRRPV---RRS--PII--------NR--GYFARWAALRRLLYQF 72 (359)
Q Consensus 10 ~~d~~V~~Ta~~a~~~R~--Sa~~~gy~~Dp~a~~fv~~~~---rr~--P~i--------nr--G~~~R~~~id~~i~~F 72 (359)
..-..|..|+..+++.|+ |....++++||||..|++... .+. |.. ++ ++.+|++.+|+.+.+|
T Consensus 9 ~~~~~v~~Tal~~a~~RA~es~~~~~L~~D~~A~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~Rtr~fD~~~~~~ 88 (297)
T COG3315 9 DKLSGVGKTALIVAAARALESRKPDPLIDDPFAEELVRQGDDDFTKLADPALALGGGDFLERMNFLAARTRYFDDFVRAA 88 (297)
T ss_pred hhhcchhHHHHHHHHHHHHHhcCCCcccCCHHHHHHHhhhHHHHHHhcChhhhcccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 345579999999999999 777789999999999998431 111 221 22 4778999999999999
Q ss_pred HhcCCCCCCcCCCcceEEEeCCCCchhhhhhccCCCCCcEEEEecchhHHHHHHHHHhhcccccccccccccccccCCCc
Q 018210 73 LDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEV 152 (359)
Q Consensus 73 l~~~~~~~~~~~~~~QVV~LGAGlDTr~fRL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~~ 152 (359)
++++ .+|||+||||||||+||+.++ .+++|||||+|+|++.|+++|+++. ..
T Consensus 89 ~~~g---------~~qvViLgaGLDTRayRl~~~--~~~~vfEvD~Pevi~~K~~~l~e~~-----------------~~ 140 (297)
T COG3315 89 LDAG---------IRQVVILGAGLDTRAYRLDWP--KGTRVFEVDLPEVIEFKKKLLAERG-----------------AT 140 (297)
T ss_pred HHhc---------ccEEEEeccccccceeecCCC--CCCeEEECCCcHHHHHHHHHhhhcC-----------------CC
Confidence 9887 379999999999999999998 6899999999999999999999862 23
Q ss_pred cCCCeEEEeccCCCchhHHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHhcCCCceEEeeeccCCCCHHHHH
Q 018210 153 LGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQ 232 (359)
Q Consensus 153 ~s~~y~lv~~DL~~~~~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~~~s~i~ye~i~p~d~Fg~~ 232 (359)
.++++++|++||++. +|.+.|.++|||++.||+||+||||+||++++++++|+.|++++++||.+.+++..+.....+.
T Consensus 141 ~~~~~~~Va~Dl~~~-dw~~~L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~ 219 (297)
T COG3315 141 PPAHRRLVAVDLRED-DWPQALAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRL 219 (297)
T ss_pred CCceEEEEecccccc-chHHHHHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcc
Confidence 477999999999974 7999999999999999999999999999999999999999999999999999986333222221
Q ss_pred --HHHHH------HHcCCCCCCCCCCCChhHHHHHHHhCCCceeeeccHHHHHhc
Q 018210 233 --MIRNL------ESRGCALLGINATPTLLAKEKLFLDQGWQQAVAWDMLRVYST 279 (359)
Q Consensus 233 --m~~~l------~~~g~~l~gi~~y~t~~~~~~r~~~~Gw~~~~~~d~~~~y~~ 279 (359)
+.... ...|.++.+ .....+....+.++||.........+.+.+
T Consensus 220 ~~~~~~~~~~~~~~~~~e~~~~---~~~~~e~~~~l~~~g~~~~~~~~~~~~~~~ 271 (297)
T COG3315 220 RRPAARKTMRGEDLDRGELVYF---GDDPAEIETWLAERGWRSTLNRTTEDLAAR 271 (297)
T ss_pred cchhhhhhccccccccccceec---cCCHHHHHHHHHhcCEEEEecCCcHHHHHH
Confidence 11111 123444432 234677888899999998776544444443
No 4
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=100.00 E-value=8.4e-38 Score=280.98 Aligned_cols=165 Identities=32% Similarity=0.487 Sum_probs=136.4
Q ss_pred HHHHHHHhh--cCCCCCCCCCHhHHHHHcCCCC----------------CCcccccchhHHHHHHHHHHHHHHhcCCCCC
Q 018210 19 NDDASASKL--SCVKKGYMKDDYIHLFVRRPVR----------------RSPIINRGYFARWAALRRLLYQFLDCGSDGD 80 (359)
Q Consensus 19 a~~a~~~R~--Sa~~~gy~~Dp~a~~fv~~~~r----------------r~P~inrG~~~R~~~id~~i~~Fl~~~~~~~ 80 (359)
|..++..|+ |.++.+||+||||..|+++... +.|.+++|+++|+++||..+++|+..+++
T Consensus 1 al~~~~~RA~~s~~~~~~~~Dp~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rt~~iD~~v~~~i~~~~~-- 78 (183)
T PF04072_consen 1 ALITAAARAAESKRPDPYFEDPYAARLLSKLGRAWLKDYDFSKFNAASARDPGINRGYAARTRYIDDAVREFIAKHPG-- 78 (183)
T ss_dssp HHHHHHHHHHHHHHHHCSSHTCCCCHHHHCCCCHCC-B--SGHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred CHHHHHHHHHHhCCCCcccCCHhHHHHHcccccccccchhhhcccccccccHHHHhHHHHHHHHHHHHHHHhhccCCC--
Confidence 345666676 5556999999999999987621 36788999999999999999999998774
Q ss_pred CcCCCcceEEEeCCCCchhhhhhccCCCCCcEEEEecchhHHHHHHHHHhhcccccccccccccccccCCCccCCCeEEE
Q 018210 81 KKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLL 160 (359)
Q Consensus 81 ~~~~~~~QVV~LGAGlDTr~fRL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~lv 160 (359)
.+|||+||||||||+|||..+ .++++|||||+|+|++.|+++|++.... .+++++++
T Consensus 79 -----~~qvV~LGaGlDTr~~Rl~~~-~~~~~~~evD~p~v~~~K~~~l~~~~~~-----------------~~~~~~~v 135 (183)
T PF04072_consen 79 -----ARQVVNLGAGLDTRAYRLDNP-AGGVRWFEVDLPEVIALKRRLLPESGAR-----------------PPANYRYV 135 (183)
T ss_dssp -----ESEEEEET-TT--HHHHHHHT-TTTEEEEEEE-HHHHHHHHHHHHHTHHH-----------------HHEESSEE
T ss_pred -----CcEEEEcCCCCCchHHHhhcc-ccceEEEEeCCHHHHHHHHHHHHhCccc-----------------CCcceeEE
Confidence 569999999999999999987 2489999999999999999999986321 13567889
Q ss_pred eccCCCchhHHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHH
Q 018210 161 PVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWAS 209 (359)
Q Consensus 161 ~~DL~~~~~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la 209 (359)
++||++ +.|.+.|.++|++++.||+||+|||++||++++++++|++|+
T Consensus 136 ~~Dl~~-~~~~~~L~~~g~~~~~ptl~i~Egvl~Yl~~~~~~~ll~~ia 183 (183)
T PF04072_consen 136 PADLRD-DSWIDALPKAGFDPDRPTLFIAEGVLMYLSPEQVDALLRAIA 183 (183)
T ss_dssp ES-TTS-HHHHHHHHHCTT-TTSEEEEEEESSGGGS-HHHHHHHHHHH-
T ss_pred eccccc-hhhHHHHHHhCCCCCCCeEEEEcchhhcCCHHHHHHHHHHhC
Confidence 999999 589999999999999999999999999999999999999986
No 5
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.33 E-value=2.9e-06 Score=80.39 Aligned_cols=157 Identities=18% Similarity=0.228 Sum_probs=89.2
Q ss_pred CcceEEEeCCCCchhh--hhhc---cCCCCCcEEEEecchhHHHHHHHHHhhcccccccccccccccccCCCccCCCeEE
Q 018210 85 TKKQILSLGAGFDTTY--FQLQ---AEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKL 159 (359)
Q Consensus 85 ~~~QVV~LGAGlDTr~--fRL~---~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~l 159 (359)
|..|++-||||+=|.. .... .+ ..++.|+|.| |-|++.-+.+|..++ ..+-.+
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P-~aRVVYVD~D-Pvv~ah~ralL~~~~--------------------~g~t~~ 125 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAP-DARVVYVDND-PVVLAHARALLADNP--------------------RGRTAY 125 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-T-T-EEEEEESS-HHHHHCCHHHHTT-T--------------------TSEEEE
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCC-CceEEEECCC-chHHHHHHhhhcCCC--------------------CccEEE
Confidence 4899999999996652 2221 11 1345555555 456666666666532 234789
Q ss_pred EeccCCCchhHHHHHH-hCCCCCCCcEEEEEecccccCCH-HHHHHHHHHHHhcCCCceEEeeeccCCCC-H-HHHHHHH
Q 018210 160 LPVDLRDIQMLNEVIN-LANMDPSLPTFIIAECVLIYLDP-DSSRAIVGWASKTFSTAVFFLYEQIHPDD-A-FGQQMIR 235 (359)
Q Consensus 160 v~~DL~~~~~l~~~L~-~~g~d~~~PTl~i~EgvL~YL~~-~~~~~ll~~la~~f~~~s~i~ye~i~p~d-~-Fg~~m~~ 235 (359)
|.+|+++++.+.+... ..-+|.++|+-++.=+||.+++. +....+++.+.+..++||.+.+.+...+. + ..+.+..
T Consensus 126 v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~ 205 (267)
T PF04672_consen 126 VQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPERAEALEA 205 (267)
T ss_dssp EE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHH
T ss_pred EeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHH
Confidence 9999999866544221 23589999999999999999977 88999999999999999999998887642 2 2355566
Q ss_pred HHHHcCCCCCCCCCCCChhHHHHHHHhCCCceee
Q 018210 236 NLESRGCALLGINATPTLLAKEKLFLDQGWQQAV 269 (359)
Q Consensus 236 ~l~~~g~~l~gi~~y~t~~~~~~r~~~~Gw~~~~ 269 (359)
.+.+.+.++. ..|.++..+.|. ||+.++
T Consensus 206 ~~~~~~~~~~----~Rs~~ei~~~f~--g~elve 233 (267)
T PF04672_consen 206 VYAQAGSPGR----PRSREEIAAFFD--GLELVE 233 (267)
T ss_dssp HHHHCCS--------B-HHHHHHCCT--TSEE-T
T ss_pred HHHcCCCCce----ecCHHHHHHHcC--CCccCC
Confidence 6777777764 335555555553 898776
No 6
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=97.72 E-value=0.0042 Score=57.77 Aligned_cols=153 Identities=14% Similarity=0.211 Sum_probs=99.2
Q ss_pred cceEEEeCCCCchhhhhhccCC-CCCcEEEEecc-hhHHHHHHHHHhhcccccccccccccccccCCCccCCCeEEEecc
Q 018210 86 KKQILSLGAGFDTTYFQLQAEG-KAPHLYVELDF-IEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVD 163 (359)
Q Consensus 86 ~~QVV~LGAGlDTr~fRL~~~~-~~~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~lv~~D 163 (359)
...|+-+|||.=.....+.... .++.+++=+|. |++++.=++.+.+.+ ...+.+++..|
T Consensus 54 ~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~-------------------~~~~v~~~~~d 114 (239)
T TIGR00740 54 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH-------------------SEIPVEILCND 114 (239)
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC-------------------CCCCeEEEECC
Confidence 3579999999876655554320 24678888888 666655445554421 13467888888
Q ss_pred CCCchhHHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHhcCC-CceEEeeeccCCCCHHH-HHHHHH---H-
Q 018210 164 LRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFS-TAVFFLYEQIHPDDAFG-QQMIRN---L- 237 (359)
Q Consensus 164 L~~~~~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~-~~s~i~ye~i~p~d~Fg-~~m~~~---l- 237 (359)
+.+.+ +. ...++++-.++.|++++....+++.+.+... +|.+++.|.+.+.+... ..+.+. +
T Consensus 115 ~~~~~----------~~--~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~~~ 182 (239)
T TIGR00740 115 IRHVE----------IK--NASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFK 182 (239)
T ss_pred hhhCC----------CC--CCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHHHH
Confidence 87641 11 2347888889999999888899999988775 56777788877654332 333221 1
Q ss_pred HHcCC----------CCCCCCCCCChhHHHHHHHhCCCceee
Q 018210 238 ESRGC----------ALLGINATPTLLAKEKLFLDQGWQQAV 269 (359)
Q Consensus 238 ~~~g~----------~l~gi~~y~t~~~~~~r~~~~Gw~~~~ 269 (359)
...|. .+.+.....|++.+.++++++||+.+.
T Consensus 183 ~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGF~~~~ 224 (239)
T TIGR00740 183 RANGYSELEISQKRTALENVMRTDSIETHKARLKNVGFSHVE 224 (239)
T ss_pred HHcCCCHHHHHHHHHHHhccCCCCCHHHHHHHHHHcCCchHH
Confidence 11232 122345567899999999999998544
No 7
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=97.26 E-value=0.024 Score=53.17 Aligned_cols=153 Identities=14% Similarity=0.268 Sum_probs=96.4
Q ss_pred cceEEEeCCCCchhhhhhccC-CCCCcEEEEecc-hhHHHHHHHHHhhcccccccccccccccccCCCccCCCeEEEecc
Q 018210 86 KKQILSLGAGFDTTYFQLQAE-GKAPHLYVELDF-IEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVD 163 (359)
Q Consensus 86 ~~QVV~LGAGlDTr~fRL~~~-~~~~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~lv~~D 163 (359)
...|+-+|||.=.....+... ..++.+++=+|. |++++.=++.+...+ ...+.+++..|
T Consensus 57 ~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~-------------------~~~~v~~~~~d 117 (247)
T PRK15451 57 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK-------------------APTPVDVIEGD 117 (247)
T ss_pred CCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC-------------------CCCCeEEEeCC
Confidence 357999999987655444331 025678888888 556555444444321 13467888888
Q ss_pred CCCchhHHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHhcCC-CceEEeeeccCCCC-HHHHHHHHH----H
Q 018210 164 LRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFS-TAVFFLYEQIHPDD-AFGQQMIRN----L 237 (359)
Q Consensus 164 L~~~~~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~-~~s~i~ye~i~p~d-~Fg~~m~~~----l 237 (359)
+.+.. + ...-++++=.++.+++++.-..+++.+.+... +|.+++.|.+.+.+ ..+..+.+. .
T Consensus 118 ~~~~~----------~--~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~~~ 185 (247)
T PRK15451 118 IRDIA----------I--ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFK 185 (247)
T ss_pred hhhCC----------C--CCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHHHHH
Confidence 76531 1 11236777788899999888899999988775 46778888776543 334332221 1
Q ss_pred HHcCCC----------CCCCCCCCChhHHHHHHHhCCCceee
Q 018210 238 ESRGCA----------LLGINATPTLLAKEKLFLDQGWQQAV 269 (359)
Q Consensus 238 ~~~g~~----------l~gi~~y~t~~~~~~r~~~~Gw~~~~ 269 (359)
...|.+ +..+....|.+.+.++++++||+.+.
T Consensus 186 ~~~g~s~~ei~~~~~~~~~~~~~~~~~~~~~~L~~aGF~~v~ 227 (247)
T PRK15451 186 RANGYSELEISQKRSMLENVMLTDSVETHKARLHKAGFEHSE 227 (247)
T ss_pred HHcCCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHcCchhHH
Confidence 223332 12233335889999999999998654
No 8
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=97.23 E-value=0.022 Score=55.06 Aligned_cols=151 Identities=10% Similarity=0.136 Sum_probs=101.3
Q ss_pred cceEEEeCCCCchhhhhhccCCCCCcEEEEecchhHHHHHHHHHhhcccccccccccccccccCCCccCCCeEEEeccCC
Q 018210 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (359)
Q Consensus 86 ~~QVV~LGAGlDTr~fRL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~lv~~DL~ 165 (359)
...|+-+|||.=+....+... .+++++.=+|.|++++.=++.+.+.. ..+++++++.|+.
T Consensus 150 ~~~vlDiG~G~G~~~~~~~~~-~p~~~~~~~D~~~~~~~a~~~~~~~g-------------------l~~rv~~~~~d~~ 209 (306)
T TIGR02716 150 VKKMIDVGGGIGDISAAMLKH-FPELDSTILNLPGAIDLVNENAAEKG-------------------VADRMRGIAVDIY 209 (306)
T ss_pred CCEEEEeCCchhHHHHHHHHH-CCCCEEEEEecHHHHHHHHHHHHhCC-------------------ccceEEEEecCcc
Confidence 468999999999888887765 36778888889998877555555431 1467999999987
Q ss_pred CchhHHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHhcCCC-ceEEeeeccCCC---CHHHHHHHHHHHHcC
Q 018210 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFST-AVFFLYEQIHPD---DAFGQQMIRNLESRG 241 (359)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~~-~s~i~ye~i~p~---d~Fg~~m~~~l~~~g 241 (359)
+. .+ . + .-+++.-.++...+++....+++.+.+..++ |.++++|.+.+. ..+.. +...+...+
T Consensus 210 ~~-~~---------~-~-~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~-~~~~~~~~~ 276 (306)
T TIGR02716 210 KE-SY---------P-E-ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDY-LSHYILGAG 276 (306)
T ss_pred CC-CC---------C-C-CCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhH-HHHHHHHcc
Confidence 63 22 1 1 1344455677788888899999999887765 667788876542 12322 222222222
Q ss_pred CCCCCCCCCCChhHHHHHHHhCCCceeee
Q 018210 242 CALLGINATPTLLAKEKLFLDQGWQQAVA 270 (359)
Q Consensus 242 ~~l~gi~~y~t~~~~~~r~~~~Gw~~~~~ 270 (359)
.++ ++..+.+.++..+.|.+.||+.+..
T Consensus 277 ~~~-~~~~~~~~~e~~~ll~~aGf~~v~~ 304 (306)
T TIGR02716 277 MPF-SVLGFKEQARYKEILESLGYKDVTM 304 (306)
T ss_pred ccc-ccccCCCHHHHHHHHHHcCCCeeEe
Confidence 221 3334556788899999999997753
No 9
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=97.02 E-value=0.044 Score=52.04 Aligned_cols=156 Identities=10% Similarity=0.134 Sum_probs=97.7
Q ss_pred cceEEEeCCCCchhhhhhccCCCCCcEEEEecchhHHHHHHH-HHhhcccccccccccccccccCCCccCCCeEEEeccC
Q 018210 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAA-LIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDL 164 (359)
Q Consensus 86 ~~QVV~LGAGlDTr~fRL~~~~~~~~~~~EvD~p~vi~~K~~-~i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~lv~~DL 164 (359)
...|+-+|||.-.....+... .+.+++=+|..+.+-...+ .... ..+..++.+|+
T Consensus 53 ~~~VLDiGcG~G~~a~~la~~--~~~~v~giD~s~~~~~~a~~~~~~----------------------~~~i~~~~~D~ 108 (263)
T PTZ00098 53 NSKVLDIGSGLGGGCKYINEK--YGAHVHGVDICEKMVNIAKLRNSD----------------------KNKIEFEANDI 108 (263)
T ss_pred CCEEEEEcCCCChhhHHHHhh--cCCEEEEEECCHHHHHHHHHHcCc----------------------CCceEEEECCc
Confidence 357999999987766666543 2456777777443322222 1111 24577777787
Q ss_pred CCchhHHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHhcCCC-ceEEeeeccCCCC-HHHHHHHHHHHHcCC
Q 018210 165 RDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFST-AVFFLYEQIHPDD-AFGQQMIRNLESRGC 242 (359)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~~-~s~i~ye~i~p~d-~Fg~~m~~~l~~~g~ 242 (359)
.+. .+....=-++++-.++.+++.+....+++.+.+...+ |.+++.|...... .....+......++.
T Consensus 109 ~~~----------~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~ 178 (263)
T PTZ00098 109 LKK----------DFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKY 178 (263)
T ss_pred ccC----------CCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCC
Confidence 642 1222233467776667788877888999999887765 5556666654331 222333332333332
Q ss_pred CCCCCCCCCChhHHHHHHHhCCCceeeeccHHHHHhcCC
Q 018210 243 ALLGINATPTLLAKEKLFLDQGWQQAVAWDMLRVYSTFI 281 (359)
Q Consensus 243 ~l~gi~~y~t~~~~~~r~~~~Gw~~~~~~d~~~~y~~~l 281 (359)
.+.++++..+.++++||+.+...|+.+.|.+++
T Consensus 179 ------~~~~~~~~~~~l~~aGF~~v~~~d~~~~~~~~~ 211 (263)
T PTZ00098 179 ------TLIPIQEYGDLIKSCNFQNVVAKDISDYWLELL 211 (263)
T ss_pred ------CCCCHHHHHHHHHHCCCCeeeEEeCcHHHHHHH
Confidence 345788899999999999999888887776644
No 10
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=96.83 E-value=0.02 Score=56.00 Aligned_cols=152 Identities=13% Similarity=0.184 Sum_probs=90.1
Q ss_pred cceEEEeCCCCchhhhhhccCCCCCcEEEEecchhHHHHHHHHHhhcccccccccccccccccCCCccCCCeEEEeccCC
Q 018210 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (359)
Q Consensus 86 ~~QVV~LGAGlDTr~fRL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~lv~~DL~ 165 (359)
.+.|+-+|||.-...+++...+ ...++-||.-..+-...+.+++. ++ ...+.+++++|+.
T Consensus 122 g~~VLDvGCG~G~~~~~~~~~g--~~~v~GiDpS~~ml~q~~~~~~~------~~------------~~~~v~~~~~~ie 181 (314)
T TIGR00452 122 GRTILDVGCGSGYHMWRMLGHG--AKSLVGIDPTVLFLCQFEAVRKL------LD------------NDKRAILEPLGIE 181 (314)
T ss_pred CCEEEEeccCCcHHHHHHHHcC--CCEEEEEcCCHHHHHHHHHHHHH------hc------------cCCCeEEEECCHH
Confidence 3689999999988888887652 23678889766544333333321 00 0246777777776
Q ss_pred CchhHHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHhcCCCceEEeeec-cCCCCHHHHHHH--HHHHHcCC
Q 018210 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQ-IHPDDAFGQQMI--RNLESRGC 242 (359)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~~~s~i~ye~-i~p~d~Fg~~m~--~~l~~~g~ 242 (359)
+... ...|| ++++.+|+.++... ...|+.+.+...+|..++++. +...+. ...+. ....+
T Consensus 182 ~lp~------~~~FD-----~V~s~gvL~H~~dp--~~~L~el~r~LkpGG~Lvletl~i~g~~-~~~l~p~~ry~k--- 244 (314)
T TIGR00452 182 QLHE------LYAFD-----TVFSMGVLYHRKSP--LEHLKQLKHQLVIKGELVLETLVIDGDL-NTVLVPKDRYAK--- 244 (314)
T ss_pred HCCC------CCCcC-----EEEEcchhhccCCH--HHHHHHHHHhcCCCCEEEEEEEEecCcc-ccccCchHHHHh---
Confidence 5421 01244 67888998887433 467788888776655555443 222111 00000 00111
Q ss_pred CCCCCCCCCChhHHHHHHHhCCCceeeeccHHH
Q 018210 243 ALLGINATPTLLAKEKLFLDQGWQQAVAWDMLR 275 (359)
Q Consensus 243 ~l~gi~~y~t~~~~~~r~~~~Gw~~~~~~d~~~ 275 (359)
+..+...+|.+...+.+.++||+.+.+.+...
T Consensus 245 -~~nv~flpS~~~L~~~L~~aGF~~V~i~~~~~ 276 (314)
T TIGR00452 245 -MKNVYFIPSVSALKNWLEKVGFENFRILDVLK 276 (314)
T ss_pred -ccccccCCCHHHHHHHHHHCCCeEEEEEeccC
Confidence 22334467888999999999999998765443
No 11
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.44 E-value=0.16 Score=47.73 Aligned_cols=192 Identities=17% Similarity=0.183 Sum_probs=109.3
Q ss_pred CHhHHHHHcCCCCCCcccccchhHHHHHHHHHHHHHHhcCCCCCCcCCCcceEEEeCCCCchhhhhhccCCCCCcEEEEe
Q 018210 37 DDYIHLFVRRPVRRSPIINRGYFARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVEL 116 (359)
Q Consensus 37 Dp~a~~fv~~~~rr~P~inrG~~~R~~~id~~i~~Fl~~~~~~~~~~~~~~QVV~LGAGlDTr~fRL~~~~~~~~~~~Ev 116 (359)
|..|..|.+... ....| .+|...+..-++.+++..+. ....|+-+|||.-.....|... +..++=+
T Consensus 7 d~~a~~f~~~~y----~~~~g-~~r~~~~~~~~~~~l~~l~~------~~~~vLDiGcG~G~~a~~la~~---g~~v~~v 72 (255)
T PRK11036 7 DDIAEKFSRNIY----GTTKG-QIRQAILWQDLDRLLAELPP------RPLRVLDAGGGEGQTAIKLAEL---GHQVILC 72 (255)
T ss_pred hhHHHHHHHhcc----CCCcc-HHHHHHHHHHHHHHHHhcCC------CCCEEEEeCCCchHHHHHHHHc---CCEEEEE
Confidence 456777775431 01112 24555555556667665442 2468999999999888888765 3566667
Q ss_pred cc-hhHHHHHHHHHhhcccccccccccccccccCCCccCCCeEEEeccCCCchhHHHHHHhCCCCCCCcEEEEEeccccc
Q 018210 117 DF-IEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIY 195 (359)
Q Consensus 117 D~-p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~lv~~DL~~~~~l~~~L~~~g~d~~~PTl~i~EgvL~Y 195 (359)
|. |++++.=++.+.+.+ ...+.+++.+|..+.. . +....--++++-.++.|
T Consensus 73 D~s~~~l~~a~~~~~~~g-------------------~~~~v~~~~~d~~~l~---~------~~~~~fD~V~~~~vl~~ 124 (255)
T PRK11036 73 DLSAEMIQRAKQAAEAKG-------------------VSDNMQFIHCAAQDIA---Q------HLETPVDLILFHAVLEW 124 (255)
T ss_pred ECCHHHHHHHHHHHHhcC-------------------CccceEEEEcCHHHHh---h------hcCCCCCEEEehhHHHh
Confidence 76 445544444444321 1356788888876631 1 11123347788899999
Q ss_pred CCHHHHHHHHHHHHhcCCCceEEeeeccCCCCHHHH-HHHHHHH--HcCCCC-----CCCCCCCChhHHHHHHHhCCCce
Q 018210 196 LDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQ-QMIRNLE--SRGCAL-----LGINATPTLLAKEKLFLDQGWQQ 267 (359)
Q Consensus 196 L~~~~~~~ll~~la~~f~~~s~i~ye~i~p~d~Fg~-~m~~~l~--~~g~~l-----~gi~~y~t~~~~~~r~~~~Gw~~ 267 (359)
++.. ..+++.+.+...+|..++.-..+++....+ .+..++. ..+.+- .....+.++++..+.+.++||+.
T Consensus 125 ~~~~--~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~aGf~~ 202 (255)
T PRK11036 125 VADP--KSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWLEEAGWQI 202 (255)
T ss_pred hCCH--HHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHHHHHCCCeE
Confidence 9644 367888888777665554433333321111 1112221 112111 01123457888889999999998
Q ss_pred eeecc
Q 018210 268 AVAWD 272 (359)
Q Consensus 268 ~~~~d 272 (359)
+....
T Consensus 203 ~~~~g 207 (255)
T PRK11036 203 MGKTG 207 (255)
T ss_pred eeeee
Confidence 76443
No 12
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=96.27 E-value=0.16 Score=49.85 Aligned_cols=151 Identities=14% Similarity=0.193 Sum_probs=94.0
Q ss_pred ceEEEeCCCCchhhhhhccCCCCCcEEEEecchhHHHHHHHHHhhcccccccccccccccccCCCccCCCeEEEeccCCC
Q 018210 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRD 166 (359)
Q Consensus 87 ~QVV~LGAGlDTr~fRL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~lv~~DL~~ 166 (359)
+.|+-+|||.=...+++...+ ...++-+|.....-.+.+.+.+. .+ ...+.+++.+|+.+
T Consensus 124 ~~VLDIGCG~G~~~~~la~~g--~~~V~GiD~S~~~l~q~~a~~~~------~~------------~~~~i~~~~~d~e~ 183 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGAG--AKLVVGIDPSQLFLCQFEAVRKL------LG------------NDQRAHLLPLGIEQ 183 (322)
T ss_pred CEEEEeccCCcHHHHHHHHcC--CCEEEEEcCCHHHHHHHHHHHHh------cC------------CCCCeEEEeCCHHH
Confidence 689999999999999998763 33588888766554444444331 00 02468888888876
Q ss_pred chhHHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHhcCCCceEEeeecc-CCCCHHHHHH-HHHHHHcCCCC
Q 018210 167 IQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQI-HPDDAFGQQM-IRNLESRGCAL 244 (359)
Q Consensus 167 ~~~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~~~s~i~ye~i-~p~d~Fg~~m-~~~l~~~g~~l 244 (359)
.+ . ...|| ++++-+|+.++.. ...+|+.+.+...+|..++++.+ .+.+.-...+ ..... .+
T Consensus 184 lp-~-----~~~FD-----~V~s~~vl~H~~d--p~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~----~~ 246 (322)
T PRK15068 184 LP-A-----LKAFD-----TVFSMGVLYHRRS--PLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYA----KM 246 (322)
T ss_pred CC-C-----cCCcC-----EEEECChhhccCC--HHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHh----cC
Confidence 42 1 11233 7778888888753 35678888887777666666543 2221100000 11111 13
Q ss_pred CCCCCCCChhHHHHHHHhCCCceeeeccHH
Q 018210 245 LGINATPTLLAKEKLFLDQGWQQAVAWDML 274 (359)
Q Consensus 245 ~gi~~y~t~~~~~~r~~~~Gw~~~~~~d~~ 274 (359)
.++...+|.+...+.+.++||+.+.+.+..
T Consensus 247 ~~~~~lps~~~l~~~L~~aGF~~i~~~~~~ 276 (322)
T PRK15068 247 RNVYFIPSVPALKNWLERAGFKDVRIVDVS 276 (322)
T ss_pred ccceeCCCHHHHHHHHHHcCCceEEEEeCC
Confidence 334445788999999999999998876654
No 13
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=95.86 E-value=0.047 Score=50.68 Aligned_cols=101 Identities=19% Similarity=0.240 Sum_probs=78.7
Q ss_pred cceEEEeCCCCchhhhhhccCCCCCcEEEEecchhHHHHHHHHHhhcccccccccccccccccCCCccCCCeEEEeccCC
Q 018210 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (359)
Q Consensus 86 ~~QVV~LGAGlDTr~fRL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~lv~~DL~ 165 (359)
..+||-+|+|.=.....+... ++++++.=+|+|+|++.=.+ .+++.+++.|+.
T Consensus 101 ~~~vvDvGGG~G~~~~~l~~~-~P~l~~~v~Dlp~v~~~~~~--------------------------~~rv~~~~gd~f 153 (241)
T PF00891_consen 101 FKTVVDVGGGSGHFAIALARA-YPNLRATVFDLPEVIEQAKE--------------------------ADRVEFVPGDFF 153 (241)
T ss_dssp SSEEEEET-TTSHHHHHHHHH-STTSEEEEEE-HHHHCCHHH--------------------------TTTEEEEES-TT
T ss_pred ccEEEeccCcchHHHHHHHHH-CCCCcceeeccHhhhhcccc--------------------------ccccccccccHH
Confidence 578999999999998888776 58999999999999765443 268999999998
Q ss_pred CchhHHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHhcCCC---ceEEeeeccCCC
Q 018210 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFST---AVFFLYEQIHPD 226 (359)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~~---~s~i~ye~i~p~ 226 (359)
+. + . . -=+++.=-||...+++++..||+.+++..++ |..++.|++.+.
T Consensus 154 ~~--~---------P-~-~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~ 204 (241)
T PF00891_consen 154 DP--L---------P-V-ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPD 204 (241)
T ss_dssp TC--C---------S-S-ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECS
T ss_pred hh--h---------c-c-ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCC
Confidence 52 1 1 1 2377778899999999999999999998865 577889999765
No 14
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=95.75 E-value=0.59 Score=42.78 Aligned_cols=153 Identities=12% Similarity=0.092 Sum_probs=84.0
Q ss_pred ceEEEeCCCCchhhhhhccCCCCCcEEEEecc-hhHHHHHHHHHhhcccccccccccccccccCCCccCCCeEEEeccCC
Q 018210 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDF-IEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (359)
Q Consensus 87 ~QVV~LGAGlDTr~fRL~~~~~~~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~lv~~DL~ 165 (359)
..|+-+|||.=.....+.....+...++=+|. |+.++.-++.+.+.. .+++.++..|..
T Consensus 47 ~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--------------------~~~v~~~~~d~~ 106 (231)
T TIGR02752 47 TSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAG--------------------LHNVELVHGNAM 106 (231)
T ss_pred CEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcC--------------------CCceEEEEechh
Confidence 57999999987766666543113456666666 444444333343310 246777887876
Q ss_pred CchhHHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHhcCCC-ceEEeeeccCCCCHHHHHHHHH--------
Q 018210 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFST-AVFFLYEQIHPDDAFGQQMIRN-------- 236 (359)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~~-~s~i~ye~i~p~d~Fg~~m~~~-------- 236 (359)
+.+ + ....+| ++++-.++.+++. ..++++.+.+...+ |.+++.|...|+...-+.....
T Consensus 107 ~~~-~----~~~~fD-----~V~~~~~l~~~~~--~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ 174 (231)
T TIGR02752 107 ELP-F----DDNSFD-----YVTIGFGLRNVPD--YMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPL 174 (231)
T ss_pred cCC-C----CCCCcc-----EEEEecccccCCC--HHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHH
Confidence 531 1 111233 4444455566653 34677777666654 5666677665543222111110
Q ss_pred HHH--------cCCCCCCCCCCCChhHHHHHHHhCCCceeeec
Q 018210 237 LES--------RGCALLGINATPTLLAKEKLFLDQGWQQAVAW 271 (359)
Q Consensus 237 l~~--------~g~~l~gi~~y~t~~~~~~r~~~~Gw~~~~~~ 271 (359)
+.. .+.-..++..|++.++..+.+.++||+.+...
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~ 217 (231)
T TIGR02752 175 FGKLFAKSYKEYSWLQESTRDFPGMDELAEMFQEAGFKDVEVK 217 (231)
T ss_pred hhHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCeeEEE
Confidence 000 00000134567889999999999999987654
No 15
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=95.69 E-value=0.99 Score=42.71 Aligned_cols=158 Identities=18% Similarity=0.123 Sum_probs=89.4
Q ss_pred cceEEEeCCCCchhhhhhccCCCCCcEEEEecchhHHHHHHH-HHhhcccccccccccccccccCCCccCCCeEEEeccC
Q 018210 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAA-LIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDL 164 (359)
Q Consensus 86 ~~QVV~LGAGlDTr~fRL~~~~~~~~~~~EvD~p~vi~~K~~-~i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~lv~~DL 164 (359)
...|+-+|||.=.....+.....+...++=+|.-+-+-...+ ...... .....+.+++..|.
T Consensus 74 ~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~-----------------~~~~~~i~~~~~d~ 136 (261)
T PLN02233 74 GDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKA-----------------KSCYKNIEWIEGDA 136 (261)
T ss_pred CCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhh-----------------hccCCCeEEEEccc
Confidence 358999999997766666543113457777777443322221 111100 00134678888888
Q ss_pred CCchhHHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHhcCC-CceEEeeeccCCCCHHHHHHHHHHHHc-CC
Q 018210 165 RDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFS-TAVFFLYEQIHPDDAFGQQMIRNLESR-GC 242 (359)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~-~~s~i~ye~i~p~d~Fg~~m~~~l~~~-g~ 242 (359)
.+.+ +..+.--++++-.++..++ ...++++.+.+... +|.+++.|...+...|+..+.+.+-+. -.
T Consensus 137 ~~lp----------~~~~sfD~V~~~~~l~~~~--d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~ 204 (261)
T PLN02233 137 TDLP----------FDDCYFDAITMGYGLRNVV--DRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVV 204 (261)
T ss_pred ccCC----------CCCCCEeEEEEecccccCC--CHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhh
Confidence 7642 2222233555555556664 24566777777665 466677888777766665443321110 00
Q ss_pred CC--------------CCCCCCCChhHHHHHHHhCCCceeeecc
Q 018210 243 AL--------------LGINATPTLLAKEKLFLDQGWQQAVAWD 272 (359)
Q Consensus 243 ~l--------------~gi~~y~t~~~~~~r~~~~Gw~~~~~~d 272 (359)
|+ .++..+.+.++..+.++++||+.+...+
T Consensus 205 ~~~~~~~~~~~y~~l~~s~~~f~s~~el~~ll~~aGF~~~~~~~ 248 (261)
T PLN02233 205 PVATGYGLAKEYEYLKSSINEYLTGEELEKLALEAGFSSAKHYE 248 (261)
T ss_pred HHHHHhCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCEEEEEE
Confidence 00 1234577888888899999998776543
No 16
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=95.60 E-value=0.5 Score=43.12 Aligned_cols=149 Identities=14% Similarity=0.138 Sum_probs=83.4
Q ss_pred cceEEEeCCCCchhhhhhccCCCCCcEEEEecc-hhHHHHHHHHHhhcccccccccccccccccCCCccCCCeEEEeccC
Q 018210 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDF-IEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDL 164 (359)
Q Consensus 86 ~~QVV~LGAGlDTr~fRL~~~~~~~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~lv~~DL 164 (359)
...|+-+|||.=.....+... +..++=+|. |+++..=++.+.... ...+..++.+|+
T Consensus 56 ~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~-------------------~~~~i~~~~~d~ 113 (219)
T TIGR02021 56 GKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRD-------------------VAGNVEFEVNDL 113 (219)
T ss_pred CCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcC-------------------CCCceEEEECCh
Confidence 468999999998777677654 234445554 333333333333210 124677777777
Q ss_pred CCchhHHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHhcCCCceEEeeeccCCCCHHHHHHHHHHHHcCCCC
Q 018210 165 RDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIRNLESRGCAL 244 (359)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~~~s~i~ye~i~p~d~Fg~~m~~~l~~~g~~l 244 (359)
.+.+ ...-++++-.++.|++++....+++.+.+...++..+.+-+-.+....-+.+...+. +.+-
T Consensus 114 ~~~~-------------~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~ 178 (219)
T TIGR02021 114 LSLC-------------GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFP--GSSR 178 (219)
T ss_pred hhCC-------------CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCc--Cccc
Confidence 6531 123366666667888888888899988876555554444221111011111211111 1111
Q ss_pred CCCCCCCChhHHHHHHHhCCCceeeec
Q 018210 245 LGINATPTLLAKEKLFLDQGWQQAVAW 271 (359)
Q Consensus 245 ~gi~~y~t~~~~~~r~~~~Gw~~~~~~ 271 (359)
.....+.++++..+.+.++||+.....
T Consensus 179 ~~~~~~~~~~~~~~~l~~~Gf~v~~~~ 205 (219)
T TIGR02021 179 ATSAYLHPMTDLERALGELGWKIVREG 205 (219)
T ss_pred ccceEEecHHHHHHHHHHcCceeeeee
Confidence 111234578888999999999987753
No 17
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=95.48 E-value=0.92 Score=43.88 Aligned_cols=176 Identities=19% Similarity=0.222 Sum_probs=113.6
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCcCCCcceEEEeCCCCchhhhhhccCC-CCCcEEEEecc-hhHHHHHHHHHhhccccc
Q 018210 59 FARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEG-KAPHLYVELDF-IEVTSKKAALIETHGELK 136 (359)
Q Consensus 59 ~~R~~~id~~i~~Fl~~~~~~~~~~~~~~QVV~LGAGlDTr~fRL~~~~-~~~~~~~EvD~-p~vi~~K~~~i~~~~~l~ 136 (359)
-.|-..+..+|++-+..-.. ..++.-||.+.||-=---+-..... .....+.=.|+ |..++.=+++|++..
T Consensus 113 R~Rk~~l~~~i~~ai~~L~~----~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~g--- 185 (311)
T PF12147_consen 113 RQRKVHLEELIRQAIARLRE----QGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERG--- 185 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHh----cCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcC---
Confidence 34666666666666654321 1136899999999633233322221 11245566666 566777777887742
Q ss_pred ccccccccccccCCCccCCCeEEEeccCCCchhHHHHHHhCCCCCCCcEEEEEecccccCCHHH-HHHHHHHHHhcCCCc
Q 018210 137 DKVGVTASISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDS-SRAIVGWASKTFSTA 215 (359)
Q Consensus 137 ~~~g~~~~~~~~~~~~~s~~y~lv~~DL~~~~~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~-~~~ll~~la~~f~~~ 215 (359)
+ .+-.++.-.|..|.+.+.. ++ -.|||.|.-|+.-|++... +...|+.++...+++
T Consensus 186 ---------------L-~~i~~f~~~dAfd~~~l~~------l~-p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pg 242 (311)
T PF12147_consen 186 ---------------L-EDIARFEQGDAFDRDSLAA------LD-PAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPG 242 (311)
T ss_pred ---------------C-ccceEEEecCCCCHhHhhc------cC-CCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCC
Confidence 1 3445888888888544322 32 4799999999999999966 888999999988998
Q ss_pred eEEeeeccCCCCHHHHHHHHHHHH--cCCCCCCCCCCCChhHHHHHHHhCCCce
Q 018210 216 VFFLYEQIHPDDAFGQQMIRNLES--RGCALLGINATPTLLAKEKLFLDQGWQQ 267 (359)
Q Consensus 216 s~i~ye~i~p~d~Fg~~m~~~l~~--~g~~l~gi~~y~t~~~~~~r~~~~Gw~~ 267 (359)
.+++|.- .|.++-=++....|.+ -|.+|. +...|-.++-+.+..+||+.
T Consensus 243 G~lIyTg-QPwHPQle~IAr~LtsHr~g~~Wv--MRrRsq~EmD~Lv~~aGF~K 293 (311)
T PF12147_consen 243 GYLIYTG-QPWHPQLEMIARVLTSHRDGKAWV--MRRRSQAEMDQLVEAAGFEK 293 (311)
T ss_pred cEEEEcC-CCCCcchHHHHHHHhcccCCCceE--EEecCHHHHHHHHHHcCCch
Confidence 8899864 2333222333333433 356774 55667778888889999974
No 18
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=95.28 E-value=0.3 Score=50.11 Aligned_cols=153 Identities=12% Similarity=0.092 Sum_probs=91.9
Q ss_pred cceEEEeCCCCchhhhhhccCCCCCcEEEEecchhHHHHHHH-HHhhcccccccccccccccccCCCccCCCeEEEeccC
Q 018210 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAA-LIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDL 164 (359)
Q Consensus 86 ~~QVV~LGAGlDTr~fRL~~~~~~~~~~~EvD~p~vi~~K~~-~i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~lv~~DL 164 (359)
...|+-+|||.=.....|... .+.+++=+|..+..-..++ .... ...+..++..|+
T Consensus 267 ~~~vLDiGcG~G~~~~~la~~--~~~~v~gvDiS~~~l~~A~~~~~~---------------------~~~~v~~~~~d~ 323 (475)
T PLN02336 267 GQKVLDVGCGIGGGDFYMAEN--FDVHVVGIDLSVNMISFALERAIG---------------------RKCSVEFEVADC 323 (475)
T ss_pred CCEEEEEeccCCHHHHHHHHh--cCCEEEEEECCHHHHHHHHHHhhc---------------------CCCceEEEEcCc
Confidence 357999999997776666654 3556777777433222221 1111 034677788887
Q ss_pred CCchhHHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHhcCCCceE-EeeeccCCCCHHHHHHHHHHHHcCCC
Q 018210 165 RDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVF-FLYEQIHPDDAFGQQMIRNLESRGCA 243 (359)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~~~s~-i~ye~i~p~d~Fg~~m~~~l~~~g~~ 243 (359)
.+.. +....--++++-+++.+++. ..++++.+.+...+|.. ++-|.......-+..+...+...|..
T Consensus 324 ~~~~----------~~~~~fD~I~s~~~l~h~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~ 391 (475)
T PLN02336 324 TKKT----------YPDNSFDVIYSRDTILHIQD--KPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYD 391 (475)
T ss_pred ccCC----------CCCCCEEEEEECCcccccCC--HHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCC
Confidence 6631 21223458888888888864 35788888887766554 44444332211112222334444432
Q ss_pred CCCCCCCCChhHHHHHHHhCCCceeeeccHHHHHhc
Q 018210 244 LLGINATPTLLAKEKLFLDQGWQQAVAWDMLRVYST 279 (359)
Q Consensus 244 l~gi~~y~t~~~~~~r~~~~Gw~~~~~~d~~~~y~~ 279 (359)
+++.++..+.+.++||+.+...|+.+-|..
T Consensus 392 ------~~~~~~~~~~l~~aGF~~i~~~d~~~~~~~ 421 (475)
T PLN02336 392 ------LHDVQAYGQMLKDAGFDDVIAEDRTDQFLQ 421 (475)
T ss_pred ------CCCHHHHHHHHHHCCCeeeeeecchHHHHH
Confidence 456778889999999999988776665543
No 19
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=95.23 E-value=0.52 Score=46.65 Aligned_cols=145 Identities=13% Similarity=0.084 Sum_probs=85.6
Q ss_pred ceEEEeCCCCchhhhhhccCCCCCcEEEEecchhHHHHHHHHHhhcccccccccccccccccCCCccCCCeEEEeccCCC
Q 018210 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRD 166 (359)
Q Consensus 87 ~QVV~LGAGlDTr~fRL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~lv~~DL~~ 166 (359)
..|+-+|||.=.....+... .+...+.=+|..+.+-.+.+.... ..+..++..|+.+
T Consensus 115 ~~VLDLGcGtG~~~l~La~~-~~~~~VtgVD~S~~mL~~A~~k~~----------------------~~~i~~i~gD~e~ 171 (340)
T PLN02490 115 LKVVDVGGGTGFTTLGIVKH-VDAKNVTILDQSPHQLAKAKQKEP----------------------LKECKIIEGDAED 171 (340)
T ss_pred CEEEEEecCCcHHHHHHHHH-CCCCEEEEEECCHHHHHHHHHhhh----------------------ccCCeEEeccHHh
Confidence 57999999986655555432 123566667764333323222111 1234566666655
Q ss_pred chhHHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHhcCCC-ceEEeeeccCCCCHHHHHHHHHHHHcCCCCC
Q 018210 167 IQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFST-AVFFLYEQIHPDDAFGQQMIRNLESRGCALL 245 (359)
Q Consensus 167 ~~~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~~-~s~i~ye~i~p~d~Fg~~m~~~l~~~g~~l~ 245 (359)
. ++..+.--++++-+++.|++.. ..+++.+.+...+ |.+++.+...+.....+.+... +
T Consensus 172 l----------p~~~~sFDvVIs~~~L~~~~d~--~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~-------~- 231 (340)
T PLN02490 172 L----------PFPTDYADRYVSAGSIEYWPDP--QRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADV-------W- 231 (340)
T ss_pred C----------CCCCCceeEEEEcChhhhCCCH--HHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhh-------h-
Confidence 3 2322334478888889988754 3578888776655 5555667666543222221110 1
Q ss_pred CCCCCCChhHHHHHHHhCCCceeeeccHHHH
Q 018210 246 GINATPTLLAKEKLFLDQGWQQAVAWDMLRV 276 (359)
Q Consensus 246 gi~~y~t~~~~~~r~~~~Gw~~~~~~d~~~~ 276 (359)
..+++.++..+.+++.||+.+...+....
T Consensus 232 --~~~~t~eEl~~lL~~aGF~~V~i~~i~~~ 260 (340)
T PLN02490 232 --MLFPKEEEYIEWFTKAGFKDVKLKRIGPK 260 (340)
T ss_pred --ccCCCHHHHHHHHHHCCCeEEEEEEcChh
Confidence 12467888999999999998887665443
No 20
>PLN02244 tocopherol O-methyltransferase
Probab=94.80 E-value=2.5 Score=41.65 Aligned_cols=153 Identities=14% Similarity=0.109 Sum_probs=87.5
Q ss_pred cceEEEeCCCCchhhhhhccCCCCCcEEEEecchhHHHHHHHHHhhcccccccccccccccccCCCccCCCeEEEeccCC
Q 018210 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (359)
Q Consensus 86 ~~QVV~LGAGlDTr~fRL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~lv~~DL~ 165 (359)
...|+-+|||.=.....|... .+..++=||..+.+..+.+...+.. | ..++..++..|..
T Consensus 119 ~~~VLDiGCG~G~~~~~La~~--~g~~v~gvD~s~~~i~~a~~~~~~~------g------------~~~~v~~~~~D~~ 178 (340)
T PLN02244 119 PKRIVDVGCGIGGSSRYLARK--YGANVKGITLSPVQAARANALAAAQ------G------------LSDKVSFQVADAL 178 (340)
T ss_pred CCeEEEecCCCCHHHHHHHHh--cCCEEEEEECCHHHHHHHHHHHHhc------C------------CCCceEEEEcCcc
Confidence 468999999998877777654 2466777777555444433332210 0 1356788888887
Q ss_pred CchhHHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHhcCCC-ceEEeeeccCC----CC----HHHHHHHHH
Q 018210 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFST-AVFFLYEQIHP----DD----AFGQQMIRN 236 (359)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~~-~s~i~ye~i~p----~d----~Fg~~m~~~ 236 (359)
+.+ + ....|| ++++-.++.+++. ..++++.+.....+ |.+++.+.... .. ...+.++..
T Consensus 179 ~~~-~----~~~~FD-----~V~s~~~~~h~~d--~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~ 246 (340)
T PLN02244 179 NQP-F----EDGQFD-----LVWSMESGEHMPD--KRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDK 246 (340)
T ss_pred cCC-C----CCCCcc-----EEEECCchhccCC--HHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHH
Confidence 641 1 111233 5666566677753 34677777776654 56666564432 11 111222222
Q ss_pred HHHcCCCCCCCCCCCChhHHHHHHHhCCCceeeeccHH
Q 018210 237 LESRGCALLGINATPTLLAKEKLFLDQGWQQAVAWDML 274 (359)
Q Consensus 237 l~~~g~~l~gi~~y~t~~~~~~r~~~~Gw~~~~~~d~~ 274 (359)
+.. +. .+..+.++++..+.++++||..+...|..
T Consensus 247 i~~-~~---~~p~~~s~~~~~~~l~~aGf~~v~~~d~s 280 (340)
T PLN02244 247 ICA-AY---YLPAWCSTSDYVKLAESLGLQDIKTEDWS 280 (340)
T ss_pred HHh-hc---cCCCCCCHHHHHHHHHHCCCCeeEeeeCc
Confidence 211 11 11234578889999999999998865544
No 21
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=94.59 E-value=2 Score=39.00 Aligned_cols=150 Identities=13% Similarity=0.120 Sum_probs=83.5
Q ss_pred cceEEEeCCCCchhhhhhccCCCCCcEEEEecc-hhHHHHHHHHHhhcccccccccccccccccCCCccCCCeEEEeccC
Q 018210 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDF-IEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDL 164 (359)
Q Consensus 86 ~~QVV~LGAGlDTr~fRL~~~~~~~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~lv~~DL 164 (359)
...|+-+|||.=.....|... +..+.=+|. ++.++.-++.+...+ . ..+.+++.+|+
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~~~------------------~-~~~i~~~~~d~ 121 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARR---GAKVVASDISPQMVEEARERAPEAG------------------L-AGNITFEVGDL 121 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcC------------------C-ccCcEEEEcCc
Confidence 357999999988776667654 233555555 333333333333211 0 24677777774
Q ss_pred CCchhHHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHhcCCCceEEeeeccCCCCHHHHHHHHHHHHcCCCC
Q 018210 165 RDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIRNLESRGCAL 244 (359)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~~~s~i~ye~i~p~d~Fg~~m~~~l~~~g~~l 244 (359)
... ...+| ++++-.++.+++.+....+++.+.+..+++.++.+..-.+...+-+.+...+.....
T Consensus 122 ~~~--------~~~fD-----~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~-- 186 (230)
T PRK07580 122 ESL--------LGRFD-----TVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFTFAPYTPLLALLHWIGGLFPGPSR-- 186 (230)
T ss_pred hhc--------cCCcC-----EEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEEECCccHHHHHHHHhccccCCccC--
Confidence 321 11243 667777788889899999999998866665555554322211111111111110000
Q ss_pred CCCCCCCChhHHHHHHHhCCCceeeecc
Q 018210 245 LGINATPTLLAKEKLFLDQGWQQAVAWD 272 (359)
Q Consensus 245 ~gi~~y~t~~~~~~r~~~~Gw~~~~~~d 272 (359)
..-..+.+.++..+.+.++||+......
T Consensus 187 ~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 214 (230)
T PRK07580 187 TTRIYPHREKGIRRALAAAGFKVVRTER 214 (230)
T ss_pred CCCccccCHHHHHHHHHHCCCceEeeee
Confidence 0111234667778888999999887643
No 22
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=94.14 E-value=1.2 Score=40.60 Aligned_cols=103 Identities=18% Similarity=0.196 Sum_probs=64.2
Q ss_pred cceEEEeCCCCchhhhhhccCCCCCcEEEEecchhHHHHHHHHHhhcccccccccccccccccCCCccCCCeEEEeccCC
Q 018210 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (359)
Q Consensus 86 ~~QVV~LGAGlDTr~fRL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~lv~~DL~ 165 (359)
...|+-+|||.=.....|... .++..++=||.-+.+-...+. +. .+..++..|+.
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~-~~~~~v~giDiS~~~l~~A~~--~~----------------------~~~~~~~~d~~ 98 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRL-LPFKHIYGVEINEYAVEKAKA--YL----------------------PNINIIQGSLF 98 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHh-CCCCeEEEEECCHHHHHHHHh--hC----------------------CCCcEEEeecc
Confidence 457999999997766666543 134566666764332222221 11 11234445554
Q ss_pred CchhHHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHhcCCCceEEeeeccCC
Q 018210 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHP 225 (359)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~~~s~i~ye~i~p 225 (359)
+. +....--++++-+||.+++++...++++.+.+.. ++.+++.|..+|
T Consensus 99 ~~-----------~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~-~~~v~i~e~~~~ 146 (204)
T TIGR03587 99 DP-----------FKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS-NRYILIAEYYNP 146 (204)
T ss_pred CC-----------CCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc-CcEEEEEEeeCC
Confidence 41 2222345888999999999999999999998865 456677776665
No 23
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=94.07 E-value=1.1 Score=41.83 Aligned_cols=154 Identities=11% Similarity=0.097 Sum_probs=60.7
Q ss_pred cceEEEeCCCCchhhhhhccCCCCCcEEEEecch-hHHHHHHHHHhhcccccccccccccccccCCCccCCCeEEEeccC
Q 018210 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFI-EVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDL 164 (359)
Q Consensus 86 ~~QVV~LGAGlDTr~fRL~~~~~~~~~~~EvD~p-~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~lv~~DL 164 (359)
...|+-+|||.=.....+.....++..++=+|+. ++++.=++.+++.+ ..+.+++.+|.
T Consensus 48 g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~--------------------~~~i~~v~~da 107 (233)
T PF01209_consen 48 GDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREG--------------------LQNIEFVQGDA 107 (233)
T ss_dssp --EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT----------------------SEEEEE-BT
T ss_pred CCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhC--------------------CCCeeEEEcCH
Confidence 3589999999987777775431245788889984 44444444454421 23788899888
Q ss_pred CCchhHHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHhcC-CCceEEeeeccCCCCHHHHHHHHHHHHcCCC
Q 018210 165 RDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFLYEQIHPDDAFGQQMIRNLESRGCA 243 (359)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f-~~~s~i~ye~i~p~d~Fg~~m~~~l~~~g~~ 243 (359)
.+++ +..+.=-.+++=..+..++. -.+.++-+.+.. |+|.+++.|.-.|..+..+...+-.-+.=.|
T Consensus 108 ~~lp----------~~d~sfD~v~~~fglrn~~d--~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y~~~ilP 175 (233)
T PF01209_consen 108 EDLP----------FPDNSFDAVTCSFGLRNFPD--RERALREMYRVLKPGGRLVILEFSKPRNPLLRALYKFYFKYILP 175 (233)
T ss_dssp TB------------S-TT-EEEEEEES-GGG-SS--HHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH-------
T ss_pred HHhc----------CCCCceeEEEHHhhHHhhCC--HHHHHHHHHHHcCCCeEEEEeeccCCCCchhhceeeeeeccccc
Confidence 8752 21122223444344445542 233555555545 5677888998888654333222111000011
Q ss_pred ---------------C-CCCCCCCChhHHHHHHHhCCCceeeec
Q 018210 244 ---------------L-LGINATPTLLAKEKLFLDQGWQQAVAW 271 (359)
Q Consensus 244 ---------------l-~gi~~y~t~~~~~~r~~~~Gw~~~~~~ 271 (359)
| .++..||+.++..+.++++||+.+...
T Consensus 176 ~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~v~~~ 219 (233)
T PF01209_consen 176 LIGRLLSGDREAYRYLPESIRRFPSPEELKELLEEAGFKNVEYR 219 (233)
T ss_dssp --------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccc
Confidence 2 277889999999999999999977653
No 24
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=93.96 E-value=0.57 Score=42.62 Aligned_cols=104 Identities=17% Similarity=0.219 Sum_probs=70.3
Q ss_pred cceEEEeCCCCchhhhhhccCCCCCcEEEEecchhHHHHHHHHHhhcccccccccccccccccCCCccCCCeEEEeccCC
Q 018210 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (359)
Q Consensus 86 ~~QVV~LGAGlDTr~fRL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~lv~~DL~ 165 (359)
.++++-||||-==-+..|... +..+.=+|..++--.|.+.+.+.. .-..+..-+||+
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~--------------------~l~i~~~~~Dl~ 87 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEE--------------------GLDIRTRVADLN 87 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHT--------------------T-TEEEEE-BGC
T ss_pred CCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhc--------------------CceeEEEEecch
Confidence 579999999986557777776 456666666666666655565432 223777788988
Q ss_pred CchhHHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHhcCCCceEEeeecc
Q 018210 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQI 223 (359)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~~~s~i~ye~i 223 (359)
+. .+. ..--++++-+|++||.++...++++.+.+...+|.+.+++..
T Consensus 88 ~~-~~~----------~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 88 DF-DFP----------EEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp CB-S-T----------TTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hc-ccc----------CCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 75 221 122388899999999999999999999887777766666443
No 25
>PLN03075 nicotianamine synthase; Provisional
Probab=93.81 E-value=1.8 Score=42.04 Aligned_cols=155 Identities=12% Similarity=0.258 Sum_probs=86.6
Q ss_pred CCCCCHhHHHHHcCCCCCCcccccchhHHHHHHHHHHHHHHhcCCCCCCcCCCcceEEEeCCC-CchhhhhhccCCCCCc
Q 018210 33 GYMKDDYIHLFVRRPVRRSPIINRGYFARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAG-FDTTYFQLQAEGKAPH 111 (359)
Q Consensus 33 gy~~Dp~a~~fv~~~~rr~P~inrG~~~R~~~id~~i~~Fl~~~~~~~~~~~~~~QVV~LGAG-lDTr~fRL~~~~~~~~ 111 (359)
+.++-.|+..+.........+-+.-||-+..-+...--+++...... +.++|+-+||| .=-.+.-+.....++.
T Consensus 76 ~~lE~~~a~~i~~~~~p~~~l~~Fpy~~nY~~L~~lE~~~L~~~~~~-----~p~~VldIGcGpgpltaiilaa~~~p~~ 150 (296)
T PLN03075 76 GLLEAHFSTILGSFDNPLDHLNLFPYYNNYLKLSKLEFDLLSQHVNG-----VPTKVAFVGSGPLPLTSIVLAKHHLPTT 150 (296)
T ss_pred HHHHHHHHHHHhcCCcHHHHhhcCCchHHHHHHHHHHHHHHHHhhcC-----CCCEEEEECCCCcHHHHHHHHHhcCCCC
Confidence 45566677777754311111111234333333333333555443221 25789999999 4223444432212555
Q ss_pred EEEEecch-hHHHHHHHHHhhcccccccccccccccccCCCccCCCeEEEeccCCCchhHHHHHHhCCCCCCCcEEEEEe
Q 018210 112 LYVELDFI-EVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAE 190 (359)
Q Consensus 112 ~~~EvD~p-~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~lv~~DL~~~~~l~~~L~~~g~d~~~PTl~i~E 190 (359)
++.-+|.- +.++.=++.+.+.+. + +++.++.-.|+.+.... +. .|| .+|+.
T Consensus 151 ~~~giD~d~~ai~~Ar~~~~~~~g-----------------L-~~rV~F~~~Da~~~~~~---l~--~FD----lVF~~- 202 (296)
T PLN03075 151 SFHNFDIDPSANDVARRLVSSDPD-----------------L-SKRMFFHTADVMDVTES---LK--EYD----VVFLA- 202 (296)
T ss_pred EEEEEeCCHHHHHHHHHHhhhccC-----------------c-cCCcEEEECchhhcccc---cC--CcC----EEEEe-
Confidence 66666663 333333333433211 1 56788888888763111 11 244 56666
Q ss_pred cccccCCHHHHHHHHHHHHhcCCCceEEeee
Q 018210 191 CVLIYLDPDSSRAIVGWASKTFSTAVFFLYE 221 (359)
Q Consensus 191 gvL~YL~~~~~~~ll~~la~~f~~~s~i~ye 221 (359)
++.|++++.-.++++.+.+...+|..+++-
T Consensus 203 -ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr 232 (296)
T PLN03075 203 -ALVGMDKEEKVKVIEHLGKHMAPGALLMLR 232 (296)
T ss_pred -cccccccccHHHHHHHHHHhcCCCcEEEEe
Confidence 999999999999999999988888877764
No 26
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=93.28 E-value=0.73 Score=44.82 Aligned_cols=163 Identities=15% Similarity=0.200 Sum_probs=103.4
Q ss_pred cceEEEeCCCCchhhhhhccCCCCCcEEEEecchhHHHHHHHHHhhcccccccccccccccccCCCccCCCeEEEeccCC
Q 018210 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (359)
Q Consensus 86 ~~QVV~LGAGlDTr~fRL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~lv~~DL~ 165 (359)
.+-|+-+|||-==..||+...+ .-.++=+|.-...-..-+.+++- +|. ....+.+|.-+.
T Consensus 116 gk~VLDIGC~nGY~~frM~~~G--A~~ViGiDP~~lf~~QF~~i~~~------lg~------------~~~~~~lplgvE 175 (315)
T PF08003_consen 116 GKRVLDIGCNNGYYSFRMLGRG--AKSVIGIDPSPLFYLQFEAIKHF------LGQ------------DPPVFELPLGVE 175 (315)
T ss_pred CCEEEEecCCCcHHHHHHhhcC--CCEEEEECCChHHHHHHHHHHHH------hCC------------CccEEEcCcchh
Confidence 3689999999988899998773 44567777655554444455542 221 235666665555
Q ss_pred CchhHHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHhcCCCceEEeeeccC-CCCHHHHHHHHHHHHcCCCC
Q 018210 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIH-PDDAFGQQMIRNLESRGCAL 244 (359)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~~~s~i~ye~i~-p~d~Fg~~m~~~l~~~g~~l 244 (359)
++.. + ..|| ++++-|||+.+...- ..|+.+.+...+|..+++|.+. +.+. +..++ =..+-..|
T Consensus 176 ~Lp~----~--~~FD-----tVF~MGVLYHrr~Pl--~~L~~Lk~~L~~gGeLvLETlvi~g~~-~~~L~--P~~rYa~m 239 (315)
T PF08003_consen 176 DLPN----L--GAFD-----TVFSMGVLYHRRSPL--DHLKQLKDSLRPGGELVLETLVIDGDE-NTVLV--PEDRYAKM 239 (315)
T ss_pred hccc----c--CCcC-----EEEEeeehhccCCHH--HHHHHHHHhhCCCCEEEEEEeeecCCC-ceEEc--cCCcccCC
Confidence 5321 2 2477 899999999976443 4566666666666666766543 2211 11110 01233456
Q ss_pred CCCCCCCChhHHHHHHHhCCCceeeeccHHHHHhcCCCHHHHHhh
Q 018210 245 LGINATPTLLAKEKLFLDQGWQQAVAWDMLRVYSTFINPQERRRY 289 (359)
Q Consensus 245 ~gi~~y~t~~~~~~r~~~~Gw~~~~~~d~~~~y~~~l~~~er~Ri 289 (359)
+++.--||+.....++.++||+.+++.|... .+.+|+++-
T Consensus 240 ~nv~FiPs~~~L~~wl~r~gF~~v~~v~~~~-----Tt~~EQR~T 279 (315)
T PF08003_consen 240 RNVWFIPSVAALKNWLERAGFKDVRCVDVSP-----TTIEEQRKT 279 (315)
T ss_pred CceEEeCCHHHHHHHHHHcCCceEEEecCcc-----CCHHHhccC
Confidence 6777779999999999999999999876532 555666653
No 27
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=93.15 E-value=5.8 Score=38.84 Aligned_cols=147 Identities=14% Similarity=0.153 Sum_probs=83.0
Q ss_pred cceEEEeCCCCchhhhhhccCCCCCcEEEEecchhH-HHHHHHHHhhcccccccccccccccccCCCccCCCeEEEeccC
Q 018210 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEV-TSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDL 164 (359)
Q Consensus 86 ~~QVV~LGAGlDTr~fRL~~~~~~~~~~~EvD~p~v-i~~K~~~i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~lv~~DL 164 (359)
...|+-+|||.=.....|... +..++=+|+.+. ++.=++..+... .. .....+..+...|+
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~~-----~~----------~~~~~~~~f~~~Dl 206 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEAL-----AA----------LPPEVLPKFEANDL 206 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcc-----cc----------cccccceEEEEcch
Confidence 358999999997777777654 356777777543 332222222210 00 00023455666666
Q ss_pred CCchhHHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHhcCCCceEEeeeccCCCCHHHHHHHHHHHHcCCCC
Q 018210 165 RDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIRNLESRGCAL 244 (359)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~~~s~i~ye~i~p~d~Fg~~m~~~l~~~g~~l 244 (359)
.+. . ..+| ++++-.++.+++.+....+++++....+++.++.+ .|.. +...+.+. .|..+
T Consensus 207 ~~l-------~-~~fD-----~Vv~~~vL~H~p~~~~~~ll~~l~~l~~g~liIs~---~p~~-~~~~~l~~---~g~~~ 266 (315)
T PLN02585 207 ESL-------S-GKYD-----TVTCLDVLIHYPQDKADGMIAHLASLAEKRLIISF---APKT-LYYDILKR---IGELF 266 (315)
T ss_pred hhc-------C-CCcC-----EEEEcCEEEecCHHHHHHHHHHHHhhcCCEEEEEe---CCcc-hHHHHHHH---HHhhc
Confidence 432 1 1355 66777777788888888999999886554444433 2332 11222222 22223
Q ss_pred CCC----CCC-CChhHHHHHHHhCCCceeee
Q 018210 245 LGI----NAT-PTLLAKEKLFLDQGWQQAVA 270 (359)
Q Consensus 245 ~gi----~~y-~t~~~~~~r~~~~Gw~~~~~ 270 (359)
.+- ..| .+.++..+.++++||+....
T Consensus 267 ~g~~~~~r~y~~s~eel~~lL~~AGf~v~~~ 297 (315)
T PLN02585 267 PGPSKATRAYLHAEADVERALKKAGWKVARR 297 (315)
T ss_pred CCCCcCceeeeCCHHHHHHHHHHCCCEEEEE
Confidence 321 123 36788888889999997653
No 28
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=92.65 E-value=0.27 Score=39.02 Aligned_cols=95 Identities=17% Similarity=0.225 Sum_probs=55.9
Q ss_pred EEEeCCCCchhhhhhccCC--CCCcEEEEecch-hHHHHHHHHHhhcccccccccccccccccCCCccCCCeEEEeccCC
Q 018210 89 ILSLGAGFDTTYFQLQAEG--KAPHLYVELDFI-EVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (359)
Q Consensus 89 VV~LGAGlDTr~fRL~~~~--~~~~~~~EvD~p-~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~lv~~DL~ 165 (359)
|+-||||.=+....+.... .+..++.=||.- +.++.=++..... ..+.+++..|+.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~---------------------~~~~~~~~~D~~ 59 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSED---------------------GPKVRFVQADAR 59 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHT---------------------TTTSEEEESCTT
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhc---------------------CCceEEEECCHh
Confidence 5778888755444443220 123677777763 3333222222221 226788999998
Q ss_pred CchhHHHHHHhCCCCCCCcEEEEE-ecccccCCHHHHHHHHHHHHhcCCC
Q 018210 166 DIQMLNEVINLANMDPSLPTFIIA-ECVLIYLDPDSSRAIVGWASKTFST 214 (359)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~-EgvL~YL~~~~~~~ll~~la~~f~~ 214 (359)
+.+ . . .....++++ -+++.|+++++..++++.+++...+
T Consensus 60 ~l~---~------~-~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~p 99 (101)
T PF13649_consen 60 DLP---F------S-DGKFDLVVCSGLSLHHLSPEELEALLRRIARLLRP 99 (101)
T ss_dssp CHH---H------H-SSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEE
T ss_pred HCc---c------c-CCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCC
Confidence 742 1 1 124456666 7779999999999999999987654
No 29
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=92.33 E-value=6.2 Score=36.83 Aligned_cols=142 Identities=14% Similarity=0.132 Sum_probs=81.5
Q ss_pred cceEEEeCCCCchhhhhhccCCCCCcEEEEecchhHHHHHHHHHhhcccccccccccccccccCCCccCCCeEEEeccCC
Q 018210 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (359)
Q Consensus 86 ~~QVV~LGAGlDTr~fRL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~lv~~DL~ 165 (359)
...|+-+|||.-.....+... .++.+++=+|.-+.+-.+.+ + .+..++.+|+.
T Consensus 30 ~~~vLDlGcG~G~~~~~l~~~-~p~~~v~gvD~s~~~~~~a~---~-----------------------~~~~~~~~d~~ 82 (255)
T PRK14103 30 ARRVVDLGCGPGNLTRYLARR-WPGAVIEALDSSPEMVAAAR---E-----------------------RGVDARTGDVR 82 (255)
T ss_pred CCEEEEEcCCCCHHHHHHHHH-CCCCEEEEEECCHHHHHHHH---h-----------------------cCCcEEEcChh
Confidence 468999999999887777655 24667888888433332221 1 12345556654
Q ss_pred CchhHHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHhcCCCceEEeeeccCC-CCHHHHHHHHHHH------
Q 018210 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHP-DDAFGQQMIRNLE------ 238 (359)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~~~s~i~ye~i~p-~d~Fg~~m~~~l~------ 238 (359)
+.. ....|| ++++-.++.+++. -..+++.+.+...+|..+++..... ..+....+ ..+.
T Consensus 83 ~~~------~~~~fD-----~v~~~~~l~~~~d--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~-~~~~~~~~w~ 148 (255)
T PRK14103 83 DWK------PKPDTD-----VVVSNAALQWVPE--HADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAV-RALARREPWA 148 (255)
T ss_pred hCC------CCCCce-----EEEEehhhhhCCC--HHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHH-HHHhccCchh
Confidence 320 111233 8888888899864 3567777777676665555542221 11222221 1111
Q ss_pred H--cCCCCCCCCCCCChhHHHHHHHhCCCcee
Q 018210 239 S--RGCALLGINATPTLLAKEKLFLDQGWQQA 268 (359)
Q Consensus 239 ~--~g~~l~gi~~y~t~~~~~~r~~~~Gw~~~ 268 (359)
. .+.++..-..+.+++...+.++++||+..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~ 180 (255)
T PRK14103 149 KLLRDIPFRVGAVVQTPAGYAELLTDAGCKVD 180 (255)
T ss_pred HHhcccccccCcCCCCHHHHHHHHHhCCCeEE
Confidence 1 12223222345688899999999999743
No 30
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=92.32 E-value=6.9 Score=38.41 Aligned_cols=177 Identities=10% Similarity=-0.003 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCcCCCcceEEEeCCCCchhhhhhccCCCCCcEEEEecchh-HHHHHHHHHhhccccccc
Q 018210 60 ARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIE-VTSKKAALIETHGELKDK 138 (359)
Q Consensus 60 ~R~~~id~~i~~Fl~~~~~~~~~~~~~~QVV~LGAGlDTr~fRL~~~~~~~~~~~EvD~p~-vi~~K~~~i~~~~~l~~~ 138 (359)
.|...|+..+.+.+.+..... .......|+-+|||-=.....|... +..++=||.-. .++.-++.....
T Consensus 107 ~R~~~i~~~l~~~~~~~~~~~-~~~~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~------ 176 (322)
T PLN02396 107 TRLAFIRSTLCRHFSKDPSSA-KPFEGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMD------ 176 (322)
T ss_pred HHHHHHHHHHHHHhccchhhc-cCCCCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhc------
Confidence 477777776666654422100 0001347999999988766666544 45667777643 333222222111
Q ss_pred ccccccccccCCCccCCCeEEEeccCCCchhHHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHhcCCCceEE
Q 018210 139 VGVTASISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFF 218 (359)
Q Consensus 139 ~g~~~~~~~~~~~~~s~~y~lv~~DL~~~~~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~~~s~i 218 (359)
....+..++..|..+.. .....|| ++++-.|+..++.. ..+++.+.+...+|..+
T Consensus 177 -------------~~~~~i~~~~~dae~l~-----~~~~~FD-----~Vi~~~vLeHv~d~--~~~L~~l~r~LkPGG~l 231 (322)
T PLN02396 177 -------------PVTSTIEYLCTTAEKLA-----DEGRKFD-----AVLSLEVIEHVANP--AEFCKSLSALTIPNGAT 231 (322)
T ss_pred -------------CcccceeEEecCHHHhh-----hccCCCC-----EEEEhhHHHhcCCH--HHHHHHHHHHcCCCcEE
Confidence 00245677777764421 1111244 67776788888754 47888888888776666
Q ss_pred eeeccCCCC-HHHHHHHH-HHHHcCCCC--CCCCCCCChhHHHHHHHhCCCceeeec
Q 018210 219 LYEQIHPDD-AFGQQMIR-NLESRGCAL--LGINATPTLLAKEKLFLDQGWQQAVAW 271 (359)
Q Consensus 219 ~ye~i~p~d-~Fg~~m~~-~l~~~g~~l--~gi~~y~t~~~~~~r~~~~Gw~~~~~~ 271 (359)
++..++... .+...... ..-.+..|- .....+.|+++..+.+.++||+.....
T Consensus 232 iist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~~ 288 (322)
T PLN02396 232 VLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEMA 288 (322)
T ss_pred EEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEEe
Confidence 766666532 22211110 000111111 112346789999999999999987753
No 31
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=92.25 E-value=6.1 Score=37.20 Aligned_cols=149 Identities=13% Similarity=0.168 Sum_probs=79.9
Q ss_pred cceEEEeCCCCchhhhhhccCCCCCcEEEEecc-hhHHHHHHHHHhhcccccccccccccccccCCCccCCCeEEEeccC
Q 018210 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDF-IEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDL 164 (359)
Q Consensus 86 ~~QVV~LGAGlDTr~fRL~~~~~~~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~lv~~DL 164 (359)
...|+.+|||.-...+.+.....+..+++=+|. |+.++.=++.+... | -.+..++..|+
T Consensus 78 g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~-------g-------------~~~v~~~~~d~ 137 (272)
T PRK11873 78 GETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKA-------G-------------YTNVEFRLGEI 137 (272)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHc-------C-------------CCCEEEEEcch
Confidence 357889999986544443322113456788887 44444433333321 1 13566777776
Q ss_pred CCchhHHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHhcCCC-ceEEeeeccCCCCHHHHHHHHHHHHcCCC
Q 018210 165 RDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFST-AVFFLYEQIHPDDAFGQQMIRNLESRGCA 243 (359)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~~-~s~i~ye~i~p~d~Fg~~m~~~l~~~g~~ 243 (359)
.+.+ +....--++++.+++...+. ..++++.+.+...+ |.+++.|.....+ ....+.+...-.+..
T Consensus 138 ~~l~----------~~~~~fD~Vi~~~v~~~~~d--~~~~l~~~~r~LkpGG~l~i~~~~~~~~-~~~~~~~~~~~~~~~ 204 (272)
T PRK11873 138 EALP----------VADNSVDVIISNCVINLSPD--KERVFKEAFRVLKPGGRFAISDVVLRGE-LPEEIRNDAELYAGC 204 (272)
T ss_pred hhCC----------CCCCceeEEEEcCcccCCCC--HHHHHHHHHHHcCCCcEEEEEEeeccCC-CCHHHHHhHHHHhcc
Confidence 5531 21122237888888876642 24566666665654 5666666554322 112222222222111
Q ss_pred CCCCCCCCChhHHHHHHHhCCCceeee
Q 018210 244 LLGINATPTLLAKEKLFLDQGWQQAVA 270 (359)
Q Consensus 244 l~gi~~y~t~~~~~~r~~~~Gw~~~~~ 270 (359)
+....+.++..+.+.+.||..+..
T Consensus 205 ---~~~~~~~~e~~~~l~~aGf~~v~i 228 (272)
T PRK11873 205 ---VAGALQEEEYLAMLAEAGFVDITI 228 (272)
T ss_pred ---ccCCCCHHHHHHHHHHCCCCceEE
Confidence 112346677888889999997754
No 32
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=91.75 E-value=5.9 Score=38.25 Aligned_cols=111 Identities=14% Similarity=0.080 Sum_probs=67.5
Q ss_pred cceEEEeCCCCchhhhhhccCCCCCcEEEEecchhH-HHHHHHHHhhcccccccccccccccccCCCccCCCeEEEeccC
Q 018210 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEV-TSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDL 164 (359)
Q Consensus 86 ~~QVV~LGAGlDTr~fRL~~~~~~~~~~~EvD~p~v-i~~K~~~i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~lv~~DL 164 (359)
...||-||||.=...-.|......+.+|+=||...- ++.=++.+... .+.-+...+..|+
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~-------------------~p~~~v~~i~gD~ 124 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAAD-------------------YPQLEVHGICADF 124 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhh-------------------CCCceEEEEEEcc
Confidence 367999999986655555543111467888888543 33333333321 1123466778899
Q ss_pred CCchhHHHHHHhCCCCCCCcEEEEEec-ccccCCHHHHHHHHHHHHhcCCCceEEeee
Q 018210 165 RDIQMLNEVINLANMDPSLPTFIIAEC-VLIYLDPDSSRAIVGWASKTFSTAVFFLYE 221 (359)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~PTl~i~Eg-vL~YL~~~~~~~ll~~la~~f~~~s~i~ye 221 (359)
.+...+ +. ..+ +.+.++++-| .+..++++++.++|+.+.+...+|..++++
T Consensus 125 ~~~~~~---~~--~~~-~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 125 TQPLAL---PP--EPA-AGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred cchhhh---hc--ccc-cCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 873122 11 122 3466666665 456689999999999999988776555543
No 33
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=91.36 E-value=4.2 Score=37.36 Aligned_cols=177 Identities=18% Similarity=0.176 Sum_probs=116.2
Q ss_pred HHHHHHHHHHhcCCCCCCcCCCcceEEEeCCCCchhhhhhccCCCCCcEEEEecchhHHHHHHHH-Hhhccccccccccc
Q 018210 64 ALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAAL-IETHGELKDKVGVT 142 (359)
Q Consensus 64 ~id~~i~~Fl~~~~~~~~~~~~~~QVV~LGAGlDTr~fRL~~~~~~~~~~~EvD~p~vi~~K~~~-i~~~~~l~~~~g~~ 142 (359)
.|-.++++++.... ..|+-+|+|.=.-+=.+... .+.++|.=-|..+....-.+. +...+ +
T Consensus 13 pIl~vL~~~l~~~~---------~~vLEiaSGtGqHa~~FA~~-lP~l~WqPSD~~~~~~~sI~a~~~~~~-~------- 74 (204)
T PF06080_consen 13 PILEVLKQYLPDSG---------TRVLEIASGTGQHAVYFAQA-LPHLTWQPSDPDDNLRPSIRAWIAEAG-L------- 74 (204)
T ss_pred HHHHHHHHHhCccC---------ceEEEEcCCccHHHHHHHHH-CCCCEEcCCCCChHHHhhHHHHHHhcC-C-------
Confidence 34456677775432 25999999998876555544 578999988887766333322 33221 1
Q ss_pred ccccccCCCccCCCeEEEeccCCCchhHHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHhcCC-CceEEeee
Q 018210 143 ASISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFS-TAVFFLYE 221 (359)
Q Consensus 143 ~~~~~~~~~~~s~~y~lv~~DL~~~~~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~-~~s~i~ye 221 (359)
+.-..-+..|+.+. .|.-.. .++.....--.+++==++..++.+.+..|++..++..+ +|.+++|-
T Consensus 75 -----------~Nv~~P~~lDv~~~-~w~~~~-~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YG 141 (204)
T PF06080_consen 75 -----------PNVRPPLALDVSAP-PWPWEL-PAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYG 141 (204)
T ss_pred -----------cccCCCeEeecCCC-CCcccc-ccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeC
Confidence 11223356788874 332221 11334445567888888899999999999999999876 47788898
Q ss_pred ccCCCCHH---H-HHHHHHHHHcCCCCCCCCCCCChhHHHHHHHhCCCceeeeccHHH
Q 018210 222 QIHPDDAF---G-QQMIRNLESRGCALLGINATPTLLAKEKLFLDQGWQQAVAWDMLR 275 (359)
Q Consensus 222 ~i~p~d~F---g-~~m~~~l~~~g~~l~gi~~y~t~~~~~~r~~~~Gw~~~~~~d~~~ 275 (359)
+..-+..| + ...-..|+.++..| |+. ++++..+...++|+......+|-.
T Consensus 142 PF~~~G~~ts~SN~~FD~sLr~rdp~~-GiR---D~e~v~~lA~~~GL~l~~~~~MPA 195 (204)
T PF06080_consen 142 PFNRDGKFTSESNAAFDASLRSRDPEW-GIR---DIEDVEALAAAHGLELEEDIDMPA 195 (204)
T ss_pred CcccCCEeCCcHHHHHHHHHhcCCCCc-Ccc---CHHHHHHHHHHCCCccCcccccCC
Confidence 87754322 1 33345677787554 654 678888888999999888777753
No 34
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=91.04 E-value=3.8 Score=36.92 Aligned_cols=106 Identities=17% Similarity=0.281 Sum_probs=66.4
Q ss_pred ceEEEeCCCCchhhhhhccCCCCCcEEEEecc-hhHHHHHHHHHhhcccccccccccccccccCCCccCCCeEEEeccCC
Q 018210 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDF-IEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (359)
Q Consensus 87 ~QVV~LGAGlDTr~fRL~~~~~~~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~lv~~DL~ 165 (359)
..|+-+|||.=.....|... +.++.=+|. |+.++.=++.+.... ..+.+.+..|+.
T Consensus 32 ~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~--------------------~~~v~~~~~d~~ 88 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAEN--------------------LDNLHTAVVDLN 88 (197)
T ss_pred CcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcC--------------------CCcceEEecChh
Confidence 57999999987666667654 345666666 344433333333320 134566667776
Q ss_pred CchhHHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHhcCCCceE-EeeeccCCC
Q 018210 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVF-FLYEQIHPD 226 (359)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~~~s~-i~ye~i~p~ 226 (359)
+. .+ . ..+| ++++-.++.|++++....+++.+.+...++.. ++.+.+.++
T Consensus 89 ~~-~~----~-~~fD-----~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~ 139 (197)
T PRK11207 89 NL-TF----D-GEYD-----FILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTA 139 (197)
T ss_pred hC-Cc----C-CCcC-----EEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCC
Confidence 53 11 1 1233 77777888999999999999999998866554 555555443
No 35
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=90.93 E-value=6.1 Score=33.20 Aligned_cols=151 Identities=16% Similarity=0.107 Sum_probs=87.3
Q ss_pred HHHHHHHHHHhcCCCCCCcCCCcceEEEeCCCCchhhhhhccCCCCCcEEEEecchhHHHHHHHHHhhcccccccccccc
Q 018210 64 ALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTA 143 (359)
Q Consensus 64 ~id~~i~~Fl~~~~~~~~~~~~~~QVV~LGAGlDTr~fRL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~ 143 (359)
.+...+.++...... ...|+-+|||.=...-.+... +.+++=+|.-+.+..+ ...
T Consensus 8 ~~~~~~~~~~~~~~~-------~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~~~~~~~----~~~----------- 62 (161)
T PF13489_consen 8 AYADLLERLLPRLKP-------GKRVLDIGCGTGSFLRALAKR---GFEVTGVDISPQMIEK----RNV----------- 62 (161)
T ss_dssp CHHHHHHHHHTCTTT-------TSEEEEESSTTSHHHHHHHHT---TSEEEEEESSHHHHHH----TTS-----------
T ss_pred HHHHHHHHHhcccCC-------CCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHhh----hhh-----------
Confidence 344556667653222 579999999985444444433 3477777775444444 110
Q ss_pred cccccCCCccCCCeEEEeccCCCchhHHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHhcCCCceEEeeecc
Q 018210 144 SISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQI 223 (359)
Q Consensus 144 ~~~~~~~~~~s~~y~lv~~DL~~~~~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~~~s~i~ye~i 223 (359)
.....+..+. + .....--++++-.+|.|++ ....+|+.+.+...++..+++...
T Consensus 63 --------------~~~~~~~~~~--~--------~~~~~fD~i~~~~~l~~~~--d~~~~l~~l~~~LkpgG~l~~~~~ 116 (161)
T PF13489_consen 63 --------------VFDNFDAQDP--P--------FPDGSFDLIICNDVLEHLP--DPEEFLKELSRLLKPGGYLVISDP 116 (161)
T ss_dssp --------------EEEEEECHTH--H--------CHSSSEEEEEEESSGGGSS--HHHHHHHHHHHCEEEEEEEEEEEE
T ss_pred --------------hhhhhhhhhh--h--------ccccchhhHhhHHHHhhcc--cHHHHHHHHHHhcCCCCEEEEEEc
Confidence 0011111111 0 1123445888899999999 488999999998876555554444
Q ss_pred CCCCHHHHHHHHHHHHcCCCCC--CCCCCCChhHHHHHHHhCCCceee
Q 018210 224 HPDDAFGQQMIRNLESRGCALL--GINATPTLLAKEKLFLDQGWQQAV 269 (359)
Q Consensus 224 ~p~d~Fg~~m~~~l~~~g~~l~--gi~~y~t~~~~~~r~~~~Gw~~~~ 269 (359)
.....-.+. +......-. +...|.+.++..+.++++||+.++
T Consensus 117 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 117 NRDDPSPRS----FLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp BTTSHHHHH----HHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred CCcchhhhH----HHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 433221221 222222111 333577899999999999998764
No 36
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=90.16 E-value=7.2 Score=35.36 Aligned_cols=150 Identities=11% Similarity=0.097 Sum_probs=85.6
Q ss_pred eEEEeCCCCchhhhhhccCCCCCcEEEEecchhHH-HHHHHHHhhcccccccccccccccccCCCccCCCeEEEeccCCC
Q 018210 88 QILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVT-SKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRD 166 (359)
Q Consensus 88 QVV~LGAGlDTr~fRL~~~~~~~~~~~EvD~p~vi-~~K~~~i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~lv~~DL~~ 166 (359)
.|+-+|||.=.....+... .++..+.-+|....+ +.=++.+... | ...+..++..|..+
T Consensus 2 ~vLDiGcG~G~~~~~la~~-~~~~~v~gid~s~~~~~~a~~~~~~~-------g------------l~~~i~~~~~d~~~ 61 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAER-HPHLQLHGYTISPEQAEVGRERIRAL-------G------------LQGRIRIFYRDSAK 61 (224)
T ss_pred eEEEECCCCCHHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHhc-------C------------CCcceEEEeccccc
Confidence 4889999987766666544 245677777774333 3333333331 1 13567788888754
Q ss_pred chhHHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHhcCCC-ceEEeeeccCCCCHHHHHHHHHHHHcCCCCC
Q 018210 167 IQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFST-AVFFLYEQIHPDDAFGQQMIRNLESRGCALL 245 (359)
Q Consensus 167 ~~~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~~-~s~i~ye~i~p~d~Fg~~m~~~l~~~g~~l~ 245 (359)
. .+ . ..+| ++++-.++..++. ...+++.+.+...+ |.+++.|.+... +. ..+.+.
T Consensus 62 ~-~~----~-~~fD-----~I~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~--~~--------~~~~~~- 117 (224)
T smart00828 62 D-PF----P-DTYD-----LVFGFEVIHHIKD--KMDLFSNISRHLKDGGHLVLADFIANL--LS--------AIEHEE- 117 (224)
T ss_pred C-CC----C-CCCC-----EeehHHHHHhCCC--HHHHHHHHHHHcCCCCEEEEEEccccc--Cc--------cccccc-
Confidence 2 12 1 1244 5666666666643 46788888886655 555555543211 00 001111
Q ss_pred CCCCCCChhHHHHHHHhCCCceeeeccHHHHHhcCC
Q 018210 246 GINATPTLLAKEKLFLDQGWQQAVAWDMLRVYSTFI 281 (359)
Q Consensus 246 gi~~y~t~~~~~~r~~~~Gw~~~~~~d~~~~y~~~l 281 (359)
....+++.++-.+.+.+.||+.....++..-|..++
T Consensus 118 ~~~~~~s~~~~~~~l~~~Gf~~~~~~~~~~~~~~~l 153 (224)
T smart00828 118 TTSYLVTREEWAELLARNNLRVVEGVDASLEIANFL 153 (224)
T ss_pred cccccCCHHHHHHHHHHCCCeEEEeEECcHhHhhhc
Confidence 111256777788888999999988777665454433
No 37
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=90.06 E-value=4.1 Score=41.75 Aligned_cols=105 Identities=27% Similarity=0.358 Sum_probs=67.4
Q ss_pred ceEEEeCCCCchhhhhhccCCCCCcEEEEecchhHHHHHHHHHhhcccccccccccccccccCCCccCCCeEEEeccCCC
Q 018210 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRD 166 (359)
Q Consensus 87 ~QVV~LGAGlDTr~fRL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~lv~~DL~~ 166 (359)
..|+-+|||.=.....|... ...++=||.-..+-.+.+...+. ..+..++..|+.+
T Consensus 39 ~~vLDlGcG~G~~~~~la~~---~~~v~giD~s~~~l~~a~~~~~~---------------------~~~i~~~~~d~~~ 94 (475)
T PLN02336 39 KSVLELGAGIGRFTGELAKK---AGQVIALDFIESVIKKNESINGH---------------------YKNVKFMCADVTS 94 (475)
T ss_pred CEEEEeCCCcCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHhcc---------------------CCceEEEEecccc
Confidence 47999999987776666654 23456666533332222222110 2467788888865
Q ss_pred chhHHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHhcCCC-ceEEeeecc
Q 018210 167 IQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFST-AVFFLYEQI 223 (359)
Q Consensus 167 ~~~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~~-~s~i~ye~i 223 (359)
. .+ .+..+..-++++..+++|++.+...++++.+.+...+ |.+++.|..
T Consensus 95 ~-~~-------~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~ 144 (475)
T PLN02336 95 P-DL-------NISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESC 144 (475)
T ss_pred c-cc-------CCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEecc
Confidence 2 11 2333455699999999999999999999999887765 555555654
No 38
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=89.54 E-value=15 Score=32.80 Aligned_cols=153 Identities=13% Similarity=0.168 Sum_probs=81.7
Q ss_pred cceEEEeCCCCchhhhhhccCCCCCcEEEEecc-hhHHHHHHHHHhhcccccccccccccccccCCCccCCCeEEEeccC
Q 018210 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDF-IEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDL 164 (359)
Q Consensus 86 ~~QVV~LGAGlDTr~fRL~~~~~~~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~lv~~DL 164 (359)
...|+-+|||.-.....+.........++=+|. |+.++.-++.+.. ..+.+++..|+
T Consensus 40 ~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~----------------------~~~i~~~~~d~ 97 (223)
T TIGR01934 40 GQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSEL----------------------PLNIEFIQADA 97 (223)
T ss_pred CCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhcc----------------------CCCceEEecch
Confidence 468999999987766665544212145665665 3333333322221 24566777777
Q ss_pred CCchhHHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHhcCC-CceEEeeeccCCCCH-HHHH---HHHHH-H
Q 018210 165 RDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFS-TAVFFLYEQIHPDDA-FGQQ---MIRNL-E 238 (359)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~-~~s~i~ye~i~p~d~-Fg~~---m~~~l-~ 238 (359)
.+.. +.....-++++-.++.+++ ....+++.+..... +|.+++.+...+... +... +...+ .
T Consensus 98 ~~~~----------~~~~~~D~i~~~~~~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (223)
T TIGR01934 98 EALP----------FEDNSFDAVTIAFGLRNVT--DIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLP 165 (223)
T ss_pred hcCC----------CCCCcEEEEEEeeeeCCcc--cHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhh
Confidence 6631 1122344666666665554 35577887777665 456666776555432 2111 11111 1
Q ss_pred HcCCCCC-----------CCCCCCChhHHHHHHHhCCCceeeecc
Q 018210 239 SRGCALL-----------GINATPTLLAKEKLFLDQGWQQAVAWD 272 (359)
Q Consensus 239 ~~g~~l~-----------gi~~y~t~~~~~~r~~~~Gw~~~~~~d 272 (359)
..+-.+. ....|.+.++..+.+.++||+......
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 210 (223)
T TIGR01934 166 SIGGLISKNAEAYTYLPESIRAFPSQEELAAMLKEAGFEEVRYRS 210 (223)
T ss_pred hhhhhhcCCchhhHHHHHHHHhCCCHHHHHHHHHHcCCccceeee
Confidence 0010000 113456778888889999998766543
No 39
>PRK06202 hypothetical protein; Provisional
Probab=89.34 E-value=17 Score=33.27 Aligned_cols=150 Identities=12% Similarity=0.045 Sum_probs=82.4
Q ss_pred cceEEEeCCCCchhhhhhccC---CCCCcEEEEecc-hhHHHHHHHHHhhcccccccccccccccccCCCccCCCeEEEe
Q 018210 86 KKQILSLGAGFDTTYFQLQAE---GKAPHLYVELDF-IEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLP 161 (359)
Q Consensus 86 ~~QVV~LGAGlDTr~fRL~~~---~~~~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~lv~ 161 (359)
...|+-||||.-.....|... ..++.+++=+|. |++++.=++.... .+.....
T Consensus 61 ~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~-----------------------~~~~~~~ 117 (232)
T PRK06202 61 PLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR-----------------------PGVTFRQ 117 (232)
T ss_pred CcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc-----------------------CCCeEEE
Confidence 468999999997765555421 013568888888 4444332222211 1222222
Q ss_pred ccCCCchhHHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHhcCCCceEEeeeccCCCCHHHHHHHHHH-HH-
Q 018210 162 VDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIRNL-ES- 239 (359)
Q Consensus 162 ~DL~~~~~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~~~s~i~ye~i~p~d~Fg~~m~~~l-~~- 239 (359)
.|..+.. ...+.--++++=.++.++++++..++++.+.+... +.+++-|...+...+........ ..
T Consensus 118 ~~~~~l~----------~~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~-~~~~i~dl~~~~~~~~~~~~~~~~~~~ 186 (232)
T PRK06202 118 AVSDELV----------AEGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR-RLVLHNDLIRSRLAYALFWAGTRLLSR 186 (232)
T ss_pred Eeccccc----------ccCCCccEEEECCeeecCChHHHHHHHHHHHHhcC-eeEEEeccccCHHHHHHHHHHHHHhcc
Confidence 3322211 01122337777778999998888889999987654 44444444433211111000000 00
Q ss_pred ----cCCCCCCCCCCCChhHHHHHHHhCCCceeee
Q 018210 240 ----RGCALLGINATPTLLAKEKLFLDQGWQQAVA 270 (359)
Q Consensus 240 ----~g~~l~gi~~y~t~~~~~~r~~~~Gw~~~~~ 270 (359)
++-...++..++|.++..+.+.+ ||+....
T Consensus 187 ~~~~~~d~~~s~~~~~~~~el~~ll~~-Gf~~~~~ 220 (232)
T PRK06202 187 SSFVHTDGLLSVRRSYTPAELAALAPQ-GWRVERQ 220 (232)
T ss_pred CceeeccchHHHHhhcCHHHHHHHhhC-CCeEEec
Confidence 11122366678899999998888 9986554
No 40
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=88.84 E-value=10 Score=34.06 Aligned_cols=104 Identities=12% Similarity=0.128 Sum_probs=64.6
Q ss_pred cceEEEeCCCCchhhhhhccCCCCCcEEEEecc-hhHHHHHHHHHhhcccccccccccccccccCCCccCCCeEEEeccC
Q 018210 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDF-IEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDL 164 (359)
Q Consensus 86 ~~QVV~LGAGlDTr~fRL~~~~~~~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~lv~~DL 164 (359)
...|+-+|||.-.....+... +..++=+|. |..++.-++..... .+ +.+...+|+
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~------------------~~---~v~~~~~d~ 86 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARE------------------NL---PLRTDAYDI 86 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHh------------------CC---CceeEeccc
Confidence 358999999998887777654 345555666 44444333333321 01 134445555
Q ss_pred CCchhHHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHhcCCCce-EEeeeccC
Q 018210 165 RDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAV-FFLYEQIH 224 (359)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~~~s-~i~ye~i~ 224 (359)
... . ++ ...-++++-.++.+++++....+++.+.+...+|. +++.+...
T Consensus 87 ~~~-~---------~~-~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~ 136 (195)
T TIGR00477 87 NAA-A---------LN-EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMD 136 (195)
T ss_pred hhc-c---------cc-CCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecc
Confidence 432 1 11 12348888889999999999999999988776655 45555443
No 41
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=88.47 E-value=6.4 Score=31.14 Aligned_cols=105 Identities=15% Similarity=0.107 Sum_probs=69.1
Q ss_pred ceEEEeCCCCchhhhhhccCCCCCcEEEEecc-hhHHHHHHHHHhhcccccccccccccccccCCCccCCCeEEEeccCC
Q 018210 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDF-IEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (359)
Q Consensus 87 ~QVV~LGAGlDTr~fRL~~~~~~~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~lv~~DL~ 165 (359)
..|+-||||.=.....+... .++.+++=||. |++++.=++...+. -..++.+++..|+
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~-------------------~~~~~i~~~~~d~- 61 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARL-FPGARVVGVDISPEMLEIARERAAEE-------------------GLSDRITFVQGDA- 61 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHH-HTTSEEEEEESSHHHHHHHHHHHHHT-------------------TTTTTEEEEESCC-
T ss_pred CEEEEEcCcCCHHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHHhc-------------------CCCCCeEEEECcc-
Confidence 46899999998887777762 13566666666 45555444444221 1167899999999
Q ss_pred CchhHHHHHHhCCCCCCCcEEEEEec-ccc-cCCHHHHHHHHHHHHhcCCCceEEeee
Q 018210 166 DIQMLNEVINLANMDPSLPTFIIAEC-VLI-YLDPDSSRAIVGWASKTFSTAVFFLYE 221 (359)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Eg-vL~-YL~~~~~~~ll~~la~~f~~~s~i~ye 221 (359)
.. .+ -.....-++++-+ .+. |++.+...++++.+.+...++..++++
T Consensus 62 ~~-~~--------~~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 62 EF-DP--------DFLEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp HG-GT--------TTSSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cc-Cc--------ccCCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence 21 11 0112356777777 444 666688999999999988777776654
No 42
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=87.53 E-value=2.9 Score=41.26 Aligned_cols=207 Identities=12% Similarity=0.062 Sum_probs=112.8
Q ss_pred cceEEEeCC--CCchhhhhhccCCCCCcEEEEecchhHHHHHHHHHhhcccccccccccccccccCCCccCCCeEEEecc
Q 018210 86 KKQILSLGA--GFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVD 163 (359)
Q Consensus 86 ~~QVV~LGA--GlDTr~fRL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~lv~~D 163 (359)
...|+-||| |-|..=|.-... ....-+|++...+-+.+.+.-.-... ... ...-..-...++..|
T Consensus 63 ~~~VLDl~CGkGGDL~Kw~~~~i--~~~vg~Dis~~si~ea~~Ry~~~~~~----~~~-------~~~~~~f~a~f~~~D 129 (331)
T PF03291_consen 63 GLTVLDLCCGKGGDLQKWQKAKI--KHYVGIDISEESIEEARERYKQLKKR----NNS-------KQYRFDFIAEFIAAD 129 (331)
T ss_dssp T-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHHTS----TT--------HTSEECCEEEEEEST
T ss_pred CCeEEEecCCCchhHHHHHhcCC--CEEEEEeCCHHHHHHHHHHHHHhccc----ccc-------ccccccchhheeccc
Confidence 579999999 589998887654 45666777777777777766111000 000 000001224566777
Q ss_pred CCCchhHHHHHHhCCCCCCCc-EEEEEecccccC--CHHHHHHHHHHHHhcCCCceEEeeeccCCCCHHHHHHHHHHHH-
Q 018210 164 LRDIQMLNEVINLANMDPSLP-TFIIAECVLIYL--DPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIRNLES- 239 (359)
Q Consensus 164 L~~~~~l~~~L~~~g~d~~~P-Tl~i~EgvL~YL--~~~~~~~ll~~la~~f~~~s~i~ye~i~p~d~Fg~~m~~~l~~- 239 (359)
.... .+.+.+.. ...+ -++-+.-.+.|+ +++.+..+|+.+++...+|..++...+. +...++.|..
T Consensus 130 ~f~~-~l~~~~~~----~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d-----~~~i~~~l~~~ 199 (331)
T PF03291_consen 130 CFSE-SLREKLPP----RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD-----SDEIVKRLREK 199 (331)
T ss_dssp TCCS-HHHCTSSS----TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE------HHHHHCCHHC-
T ss_pred cccc-hhhhhccc----cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC-----HHHHHHHHHhh
Confidence 6652 34333221 1122 478889999887 7788899999999988776555543332 2333333332
Q ss_pred --------------------------cCCC----CC-CC---CCCC-ChhHHHHHHHhCCCceeeeccHHHHHhcCCC--
Q 018210 240 --------------------------RGCA----LL-GI---NATP-TLLAKEKLFLDQGWQQAVAWDMLRVYSTFIN-- 282 (359)
Q Consensus 240 --------------------------~g~~----l~-gi---~~y~-t~~~~~~r~~~~Gw~~~~~~d~~~~y~~~l~-- 282 (359)
.|.. |. .+ ..|- ..+.-.+.+.++|+..+...+..++|+...+
T Consensus 200 ~~~~~~~~~gN~~y~I~f~~~~~~~~fG~~Y~F~L~~~v~~~~EYlV~~~~~~~la~eyGLeLV~~~~F~ef~~e~~~~~ 279 (331)
T PF03291_consen 200 KSNSEKKKFGNSVYSIEFDSDDFFPPFGAKYDFYLEDAVDDCPEYLVPFDFFVKLAKEYGLELVEKKNFHEFYEEEKNKY 279 (331)
T ss_dssp EEECCCSCSETSSEEEEESCCSS--CTTEEEEEEETTCSSCEEEE---HHHHHHHHHHTTEEEEEEEEHHHHHHHHCCCC
T ss_pred cccccccccCCccEEEEecccCCCCCCCcEEEEEecCcCCCCceEEeeHHHHHHHHHHcCCEEEEeCChHHHHHHhccCc
Confidence 0100 01 01 1121 2345567779999999999999999984332
Q ss_pred --HHHHHhhhhccCCcCCC-----------CChhcHHHHhhCcEEE
Q 018210 283 --PQERRRYLLEFIFESVS-----------DNLIQKFSMLDGRYEL 315 (359)
Q Consensus 283 --~~er~Ri~~lE~fDE~~-----------~~~~Ee~~l~~~HY~i 315 (359)
.....+...|+..+.-. .--.+||.-..+-|.+
T Consensus 280 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~s~~ewea~~~lY~~ 325 (331)
T PF03291_consen 280 EKRSLLERMKALEKRPGSYNDNEQKRISLGTLSKDEWEAASSLYLV 325 (331)
T ss_dssp HCHHHHHCHGGG--SHHHHHHHHHHHHHCCSS-CCCHHHHCTTEEE
T ss_pred hhhHHHHHHHhhcCCCCcccchhhccccccCCCHHHHHHHHhheEE
Confidence 23445666666554321 0112578777767754
No 43
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=87.38 E-value=1 Score=42.47 Aligned_cols=153 Identities=20% Similarity=0.213 Sum_probs=93.5
Q ss_pred eEEEeCCCCchhhhhhccCC-CCCcEEEEecchhHHHHHHHHHhhcccccccccccccccccCCCccCCCeEEEeccCCC
Q 018210 88 QILSLGAGFDTTYFQLQAEG-KAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRD 166 (359)
Q Consensus 88 QVV~LGAGlDTr~fRL~~~~-~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~lv~~DL~~ 166 (359)
-|.-+|||-=...|=|.... .+++.+|-.|+.+- -..+++++. .....+.+.--+||..
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~---Ai~~vk~~~-----------------~~~e~~~~afv~Dlt~ 133 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPR---AIELVKKSS-----------------GYDESRVEAFVWDLTS 133 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChH---HHHHHHhcc-----------------ccchhhhcccceeccc
Confidence 58889999988888876542 24599999999532 123344432 1224567777889988
Q ss_pred chhHHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHhcCCCceEEe-eeccCCCC---HHH--HHHHHHHHHc
Q 018210 167 IQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFL-YEQIHPDD---AFG--QQMIRNLESR 240 (359)
Q Consensus 167 ~~~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~~~s~i~-ye~i~p~d---~Fg--~~m~~~l~~~ 240 (359)
. .|.......++|...-++++ .=++|+.-+..|+.+.+...+|+.++ -|+-.-+- .|. +.+-.|+--|
T Consensus 134 ~-~~~~~~~~~svD~it~IFvL-----SAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVR 207 (264)
T KOG2361|consen 134 P-SLKEPPEEGSVDIITLIFVL-----SAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVR 207 (264)
T ss_pred h-hccCCCCcCccceEEEEEEE-----eccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEc
Confidence 5 45554444455544444444 44679999999999999887665554 44432211 121 2222232222
Q ss_pred CCCCCCCCC-CCChhHHHHHHHhCCCceee
Q 018210 241 GCALLGINA-TPTLLAKEKLFLDQGWQQAV 269 (359)
Q Consensus 241 g~~l~gi~~-y~t~~~~~~r~~~~Gw~~~~ 269 (359)
|- |... |.+.+...+.|.+.||..+.
T Consensus 208 gD---GT~~YfF~~eeL~~~f~~agf~~~~ 234 (264)
T KOG2361|consen 208 GD---GTRAYFFTEEELDELFTKAGFEEVQ 234 (264)
T ss_pred cC---CceeeeccHHHHHHHHHhcccchhc
Confidence 22 3333 45677778899999998654
No 44
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=86.82 E-value=9.6 Score=28.31 Aligned_cols=101 Identities=17% Similarity=0.171 Sum_probs=59.2
Q ss_pred EEEeCCCCchhhhhhccCCCCCcEEEEecchhHHHHHHHHHhhcccccccccccccccccCCCccCCCeEEEeccCCCch
Q 018210 89 ILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRDIQ 168 (359)
Q Consensus 89 VV~LGAGlDTr~fRL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~lv~~DL~~~~ 168 (359)
|+.+|||.-.....+.......+..+|+|...+...|+ ..... ...+..++..|..+..
T Consensus 2 ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~--------------------~~~~~~~~~~~~~~~~ 60 (107)
T cd02440 2 VLDLGCGTGALALALASGPGARVTGVDISPVALELARK-AAAAL--------------------LADNVEVLKGDAEELP 60 (107)
T ss_pred eEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHH-HHhcc--------------------cccceEEEEcChhhhc
Confidence 68899998777666654311334445554444333332 11110 1345677777877642
Q ss_pred hHHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHhcCCCceEEee
Q 018210 169 MLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLY 220 (359)
Q Consensus 169 ~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~~~s~i~y 220 (359)
. .....+-++++-.++.++ .+....+++.+.....++..+++
T Consensus 61 -~--------~~~~~~d~i~~~~~~~~~-~~~~~~~l~~~~~~l~~~g~~~~ 102 (107)
T cd02440 61 -P--------EADESFDVIISDPPLHHL-VEDLARFLEEARRLLKPGGVLVL 102 (107)
T ss_pred -c--------ccCCceEEEEEccceeeh-hhHHHHHHHHHHHHcCCCCEEEE
Confidence 1 123456688887777776 77888888888876765554444
No 45
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=86.34 E-value=4 Score=38.02 Aligned_cols=137 Identities=18% Similarity=0.213 Sum_probs=74.7
Q ss_pred cceEEEeCCCCchhhhhhccCCCCCcEEEEecc-hhHHHHHHHHHhhcccccccccccccccccCCCccCCCeEEEeccC
Q 018210 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDF-IEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDL 164 (359)
Q Consensus 86 ~~QVV~LGAGlDTr~fRL~~~~~~~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~lv~~DL 164 (359)
..+||-||||-=-.-=-|... .+...+.-||. |++++.-++.+. +.++.-.|+
T Consensus 31 ~~~v~DLGCGpGnsTelL~~R-wP~A~i~GiDsS~~Mla~Aa~rlp-------------------------~~~f~~aDl 84 (257)
T COG4106 31 PRRVVDLGCGPGNSTELLARR-WPDAVITGIDSSPAMLAKAAQRLP-------------------------DATFEEADL 84 (257)
T ss_pred cceeeecCCCCCHHHHHHHHh-CCCCeEeeccCCHHHHHHHHHhCC-------------------------CCceecccH
Confidence 579999999864332222222 35778899998 555554444333 345566666
Q ss_pred CCchhHHHHHHhCCCCCCCcE-EEEEecccccCCHHHHHHHHHHHHhcCCCceEEeeeccCCCC-HHHHHHHHHHHHcCC
Q 018210 165 RDIQMLNEVINLANMDPSLPT-FIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDD-AFGQQMIRNLESRGC 242 (359)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~PT-l~i~EgvL~YL~~~~~~~ll~~la~~f~~~s~i~ye~i~p~d-~Fg~~m~~~l~~~g~ 242 (359)
++ +.+..|+ ++.+-.||.+|+. ..+-+-+++.. ..+|.++...+-.-.+ +-=+.|.... +.+
T Consensus 85 ~~------------w~p~~~~dllfaNAvlqWlpd-H~~ll~rL~~~-L~Pgg~LAVQmPdN~depsH~~mr~~A-~~~- 148 (257)
T COG4106 85 RT------------WKPEQPTDLLFANAVLQWLPD-HPELLPRLVSQ-LAPGGVLAVQMPDNLDEPSHRLMRETA-DEA- 148 (257)
T ss_pred hh------------cCCCCccchhhhhhhhhhccc-cHHHHHHHHHh-hCCCceEEEECCCccCchhHHHHHHHH-hcC-
Confidence 65 3455554 7788899999964 44444444555 5556555544332212 2223333332 211
Q ss_pred CCC----C----CCCCCChhHHHHHHHhCC
Q 018210 243 ALL----G----INATPTLLAKEKLFLDQG 264 (359)
Q Consensus 243 ~l~----g----i~~y~t~~~~~~r~~~~G 264 (359)
|+. | -..-+++....+.+...|
T Consensus 149 p~~~~l~~~~~~r~~v~s~a~Yy~lLa~~~ 178 (257)
T COG4106 149 PFAQELGGRGLTRAPLPSPAAYYELLAPLA 178 (257)
T ss_pred chhhhhCccccccCCCCCHHHHHHHhCccc
Confidence 211 1 123456777777776653
No 46
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=86.33 E-value=6.8 Score=37.46 Aligned_cols=104 Identities=16% Similarity=0.232 Sum_probs=65.3
Q ss_pred cceEEEeCCCCchhhhhhccCCCCCcEEEEecchhHHHHHH-HHHhhcccccccccccccccccCCCccCCCeEEEeccC
Q 018210 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKA-ALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDL 164 (359)
Q Consensus 86 ~~QVV~LGAGlDTr~fRL~~~~~~~~~~~EvD~p~vi~~K~-~~i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~lv~~DL 164 (359)
...|+-+|||.=..+..|... +..++=+|.....-.+. +..... .-+.+.+..|+
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~---------------------~l~v~~~~~D~ 176 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKE---------------------NLNIRTGLYDI 176 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHc---------------------CCceEEEEech
Confidence 358999999986666666654 34566666633322222 222221 11466666777
Q ss_pred CCchhHHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHhcCCCceE-EeeeccC
Q 018210 165 RDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVF-FLYEQIH 224 (359)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~~~s~-i~ye~i~ 224 (359)
.+. .+ ...+| ++++-+++++++++....+++.+.+...+|.. ++.+.+.
T Consensus 177 ~~~-~~-----~~~fD-----~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~ 226 (287)
T PRK12335 177 NSA-SI-----QEEYD-----FILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMD 226 (287)
T ss_pred hcc-cc-----cCCcc-----EEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 653 12 11244 89999999999999999999999988876554 4444443
No 47
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=85.76 E-value=17 Score=30.90 Aligned_cols=107 Identities=20% Similarity=0.244 Sum_probs=69.0
Q ss_pred cceEEEeCCCCchhhhhhccCCCCCcEEEEecchhHHHHHHHH-HhhcccccccccccccccccCCCccCCCeEEEeccC
Q 018210 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAAL-IETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDL 164 (359)
Q Consensus 86 ~~QVV~LGAGlDTr~fRL~~~~~~~~~~~EvD~p~vi~~K~~~-i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~lv~~DL 164 (359)
...|+-||||.=...+.|.....++.+++=||.-+.+-.+.+. +++.+ .++++++..|+
T Consensus 4 ~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~--------------------~~ni~~~~~d~ 63 (152)
T PF13847_consen 4 NKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELG--------------------LDNIEFIQGDI 63 (152)
T ss_dssp TSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTT--------------------STTEEEEESBT
T ss_pred CCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccc--------------------ccccceEEeeh
Confidence 5789999999887777777321256778888885544444444 33321 34899999999
Q ss_pred CCchhHHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHhcCC-CceEEeeecc
Q 018210 165 RDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFS-TAVFFLYEQI 223 (359)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~-~~s~i~ye~i 223 (359)
.+.+.. +. ..--++++-+++.++... ..+++.+.+... +|.+++.+..
T Consensus 64 ~~l~~~--------~~-~~~D~I~~~~~l~~~~~~--~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 64 EDLPQE--------LE-EKFDIIISNGVLHHFPDP--EKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TCGCGC--------SS-TTEEEEEEESTGGGTSHH--HHHHHHHHHHEEEEEEEEEEEEE
T ss_pred hccccc--------cC-CCeeEEEEcCchhhccCH--HHHHHHHHHHcCCCcEEEEEECC
Confidence 885311 11 334489999999888755 366777766665 4555555554
No 48
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=85.42 E-value=35 Score=32.61 Aligned_cols=169 Identities=15% Similarity=0.128 Sum_probs=98.3
Q ss_pred HHHHHHHHHHhcCCCCCCcCCCcceEEEeCCCCchhhhhhccCCCCCcEEEEecchhHHHH-HHHHHhhccccccccccc
Q 018210 64 ALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSK-KAALIETHGELKDKVGVT 142 (359)
Q Consensus 64 ~id~~i~~Fl~~~~~~~~~~~~~~QVV~LGAGlDTr~fRL~~~~~~~~~~~EvD~p~vi~~-K~~~i~~~~~l~~~~g~~ 142 (359)
+-...++..++...-+ ....|+-+|||-=....++... -++++.=|...+.+.. =++.+++. |
T Consensus 46 AQ~~k~~~~~~~~~l~-----~G~~vLDiGcGwG~~~~~~a~~--~g~~v~gitlS~~Q~~~a~~~~~~~-------g-- 109 (273)
T PF02353_consen 46 AQERKLDLLCEKLGLK-----PGDRVLDIGCGWGGLAIYAAER--YGCHVTGITLSEEQAEYARERIREA-------G-- 109 (273)
T ss_dssp HHHHHHHHHHTTTT-------TT-EEEEES-TTSHHHHHHHHH--H--EEEEEES-HHHHHHHHHHHHCS-------T--
T ss_pred HHHHHHHHHHHHhCCC-----CCCEEEEeCCCccHHHHHHHHH--cCcEEEEEECCHHHHHHHHHHHHhc-------C--
Confidence 3344455555553321 1357999999999999998876 2667777766433332 22334432 1
Q ss_pred ccccccCCCccCCCeEEEeccCCCchhHHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHhcCCCceEEeeec
Q 018210 143 ASISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQ 222 (359)
Q Consensus 143 ~~~~~~~~~~~s~~y~lv~~DL~~~~~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~~~s~i~ye~ 222 (359)
+ .++..++-+|.++.+. .+| -+++=+++-.+.++.-..+++.+.+...+|..++...
T Consensus 110 ---------l-~~~v~v~~~D~~~~~~--------~fD-----~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 110 ---------L-EDRVEVRLQDYRDLPG--------KFD-----RIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp ---------S-SSTEEEEES-GGG-----------S-S-----EEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred ---------C-CCceEEEEeeccccCC--------CCC-----EEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence 1 4677788888877421 355 3566677888999999999999999888777766665
Q ss_pred cCCCCHHH--------HHHHHHHHHcCCCCCCCCCCCChhHHHHHHHhCCCceeeeccHHHHHh
Q 018210 223 IHPDDAFG--------QQMIRNLESRGCALLGINATPTLLAKEKLFLDQGWQQAVAWDMLRVYS 278 (359)
Q Consensus 223 i~p~d~Fg--------~~m~~~l~~~g~~l~gi~~y~t~~~~~~r~~~~Gw~~~~~~d~~~~y~ 278 (359)
+...++.. ..|.+.. ++|- ..|+++.....+.+.||++....++..-|.
T Consensus 167 i~~~~~~~~~~~~~~~~~i~kyi------FPgg-~lps~~~~~~~~~~~~l~v~~~~~~~~hY~ 223 (273)
T PF02353_consen 167 ITHRDPPYHAERRSSSDFIRKYI------FPGG-YLPSLSEILRAAEDAGLEVEDVENLGRHYA 223 (273)
T ss_dssp EEE--HHHHHCTTCCCHHHHHHT------STTS----BHHHHHHHHHHTT-EEEEEEE-HHHHH
T ss_pred cccccccchhhcCCCceEEEEee------CCCC-CCCCHHHHHHHHhcCCEEEEEEEEcCcCHH
Confidence 55332221 2233332 3432 256777888888899999888777765554
No 49
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=83.55 E-value=35 Score=31.05 Aligned_cols=151 Identities=9% Similarity=-0.015 Sum_probs=77.2
Q ss_pred cceEEEeCCCCchhhhhhccCCCCCcEEEEecchhH-HHHHHHHHhhcccccccccccccccccCCCccCCCeEEEeccC
Q 018210 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEV-TSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDL 164 (359)
Q Consensus 86 ~~QVV~LGAGlDTr~fRL~~~~~~~~~~~EvD~p~v-i~~K~~~i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~lv~~DL 164 (359)
...|+.+|||.-.....+... ...+.-+|.... ++.-++.+... ..+..++.+|.
T Consensus 49 ~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~---------------------~~~~~~~~~~~ 104 (233)
T PRK05134 49 GKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALES---------------------GLKIDYRQTTA 104 (233)
T ss_pred CCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHc---------------------CCceEEEecCH
Confidence 357999999987776666554 344555665433 33222223221 11344555555
Q ss_pred CCchhHHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHhcCCCceEEeeeccCCCC-HHH-HHHHHHHHHcCC
Q 018210 165 RDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDD-AFG-QQMIRNLESRGC 242 (359)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~~~s~i~ye~i~p~d-~Fg-~~m~~~l~~~g~ 242 (359)
.+. +.. ....--++++-.++.+++. ...+++.+.+...++..+++....... .+. ..+.......+.
T Consensus 105 ~~~------~~~---~~~~fD~Ii~~~~l~~~~~--~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~ 173 (233)
T PRK05134 105 EEL------AAE---HPGQFDVVTCMEMLEHVPD--PASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRML 173 (233)
T ss_pred HHh------hhh---cCCCccEEEEhhHhhccCC--HHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhc
Confidence 432 111 0122335555555555543 346788888877665555555433221 111 111111111111
Q ss_pred CC--CCCCCCCChhHHHHHHHhCCCceeeec
Q 018210 243 AL--LGINATPTLLAKEKLFLDQGWQQAVAW 271 (359)
Q Consensus 243 ~l--~gi~~y~t~~~~~~r~~~~Gw~~~~~~ 271 (359)
+. .....|.+.++-.+.+.++||+.+...
T Consensus 174 ~~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~ 204 (233)
T PRK05134 174 PKGTHDYKKFIKPSELAAWLRQAGLEVQDIT 204 (233)
T ss_pred CcccCchhhcCCHHHHHHHHHHCCCeEeeee
Confidence 11 122346788888999999999988753
No 50
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=83.35 E-value=13 Score=34.54 Aligned_cols=119 Identities=11% Similarity=0.125 Sum_probs=75.8
Q ss_pred CcceEEEeCCCCchhhhhhccCCCCCcEEEEecchhHHH-HHHHHHhhcccccccccccccccccCCCccCCCeE-EEec
Q 018210 85 TKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTS-KKAALIETHGELKDKVGVTASISQAKGEVLGDNYK-LLPV 162 (359)
Q Consensus 85 ~~~QVV~LGAGlDTr~fRL~~~~~~~~~~~EvD~p~vi~-~K~~~i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~-lv~~ 162 (359)
++.-|+-+|||.-+-+=-+++. +.+++.=+|-.+-++ .-.+.+.+. ...++. +|-+
T Consensus 76 ~K~~vLEvgcGtG~Nfkfy~~~--p~~svt~lDpn~~mee~~~ks~~E~--------------------k~~~~~~fvva 133 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANFKFYPWK--PINSVTCLDPNEKMEEIADKSAAEK--------------------KPLQVERFVVA 133 (252)
T ss_pred CccceEEecccCCCCcccccCC--CCceEEEeCCcHHHHHHHHHHHhhc--------------------cCcceEEEEee
Confidence 3667899999998886556665 678888888855443 222222221 134555 7888
Q ss_pred cCCCchhHHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHhcC-CCceEEeeeccCCCCHHHHHHHHH
Q 018210 163 DLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFLYEQIHPDDAFGQQMIRN 236 (359)
Q Consensus 163 DL~~~~~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f-~~~s~i~ye~i~p~d~Fg~~m~~~ 236 (359)
|.++..++ ....+|.=.-||+|+ +.+...+.|+.+.+.. |.|.++..|.+.....|--.|.++
T Consensus 134 ~ge~l~~l----~d~s~DtVV~TlvLC-------Sve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~ 197 (252)
T KOG4300|consen 134 DGENLPQL----ADGSYDTVVCTLVLC-------SVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQ 197 (252)
T ss_pred chhcCccc----ccCCeeeEEEEEEEe-------ccCCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHH
Confidence 88886544 333466555565554 4566777788888766 457788889887655554444443
No 51
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=83.16 E-value=31 Score=34.18 Aligned_cols=194 Identities=16% Similarity=0.209 Sum_probs=108.1
Q ss_pred CCccccc---chhHHHHHHHHHHHHHHhcCCCCCCcCCCcceEEEeCCCCchhhhhhccCCCCCcEEEEecchhHHH-HH
Q 018210 50 RSPIINR---GYFARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTS-KK 125 (359)
Q Consensus 50 r~P~inr---G~~~R~~~id~~i~~Fl~~~~~~~~~~~~~~QVV~LGAGlDTr~fRL~~~~~~~~~~~EvD~p~vi~-~K 125 (359)
++|+|+. .-|+-...|+ .|... ..|+..||||-=--.-+.... .--.|+=+|-.+|-- .=
T Consensus 93 ~S~Ii~lRnfNNwIKs~LI~----~y~~~----------~~~~~~LgCGKGGDLlKw~kA--gI~~~igiDIAevSI~qa 156 (389)
T KOG1975|consen 93 RSPIIFLRNFNNWIKSVLIN----LYTKR----------GDDVLDLGCGKGGDLLKWDKA--GIGEYIGIDIAEVSINQA 156 (389)
T ss_pred cCceeehhhhhHHHHHHHHH----HHhcc----------ccccceeccCCcccHhHhhhh--cccceEeeehhhccHHHH
Confidence 5788752 2355544443 44332 357888999864433333322 234577788776532 11
Q ss_pred HHHHhhcccccccccccccccccCCCccCCCeEEEeccCCCchhHHHHHHhCCCCCCCc--EEEEEeccccc--CCHHHH
Q 018210 126 AALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLP--TFIIAECVLIY--LDPDSS 201 (359)
Q Consensus 126 ~~~i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~lv~~DL~~~~~l~~~L~~~g~d~~~P--Tl~i~EgvL~Y--L~~~~~ 201 (359)
++..+......... .=...++.+|-... .+.+.+. +..| -++-++-++.| -+.+.+
T Consensus 157 ~~RYrdm~~r~~~~--------------~f~a~f~~~Dc~~~-~l~d~~e-----~~dp~fDivScQF~~HYaFetee~a 216 (389)
T KOG1975|consen 157 RKRYRDMKNRFKKF--------------IFTAVFIAADCFKE-RLMDLLE-----FKDPRFDIVSCQFAFHYAFETEESA 216 (389)
T ss_pred HHHHHHHHhhhhcc--------------cceeEEEEeccchh-HHHHhcc-----CCCCCcceeeeeeeEeeeeccHHHH
Confidence 22222211100000 11357788887763 5666542 2233 47888888887 477889
Q ss_pred HHHHHHHHhcCCCceEEeeeccCCCCHHHHHHHHHHHH----------------------cCCCCCCCCC---------C
Q 018210 202 RAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIRNLES----------------------RGCALLGINA---------T 250 (359)
Q Consensus 202 ~~ll~~la~~f~~~s~i~ye~i~p~d~Fg~~m~~~l~~----------------------~g~~l~gi~~---------y 250 (359)
+-.++.+++..++|...+-.. |+. -..++++++ ...|+-|..- +
T Consensus 217 r~~l~Nva~~LkpGG~FIgTi--Pds---d~Ii~rlr~~e~~~~gNdiykv~y~~~~~k~~~~p~fG~kY~F~LedaVdc 291 (389)
T KOG1975|consen 217 RIALRNVAKCLKPGGVFIGTI--PDS---DVIIKRLRAGEVERFGNDIYKVTYEIEFQKEFDVPPFGAKYRFHLEDAVDC 291 (389)
T ss_pred HHHHHHHHhhcCCCcEEEEec--CcH---HHHHHHHHhccchhhcceeeeEeeeeecccccCCCCccceEEEEcccccCC
Confidence 999999999887765544332 321 122222211 1124334221 1
Q ss_pred C----ChhHHHHHHHhCCCceeeeccHHHHHhcCCCHH
Q 018210 251 P----TLLAKEKLFLDQGWQQAVAWDMLRVYSTFINPQ 284 (359)
Q Consensus 251 ~----t~~~~~~r~~~~Gw~~~~~~d~~~~y~~~l~~~ 284 (359)
| ..+.....+.++|.+.+......++|+.++...
T Consensus 292 PEylV~F~~l~~lae~y~LeLv~~k~F~df~~e~~~~~ 329 (389)
T KOG1975|consen 292 PEYLVPFPTLVSLAEEYGLELVFVKPFADFYEEELKKN 329 (389)
T ss_pred cceeeehHHHHHHHHhcCcEEEEeccHHHHHHHhcccc
Confidence 1 123455667889999999999999999888554
No 52
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=82.66 E-value=36 Score=30.60 Aligned_cols=155 Identities=14% Similarity=0.121 Sum_probs=80.6
Q ss_pred ceEEEeCCCCchhhhhhccCCCCCcEEEEecchhHHHHHHH-HHhhcccccccccccccccccCCCccCCCeEEEeccCC
Q 018210 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAA-LIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (359)
Q Consensus 87 ~QVV~LGAGlDTr~fRL~~~~~~~~~~~EvD~p~vi~~K~~-~i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~lv~~DL~ 165 (359)
..|+-+|||.=.....+........+++=+|.......+.+ .+...+ ...+..++.+|+.
T Consensus 53 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~-------------------~~~~~~~~~~d~~ 113 (239)
T PRK00216 53 DKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLG-------------------LSGNVEFVQGDAE 113 (239)
T ss_pred CeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccc-------------------cccCeEEEecccc
Confidence 57999999986555555443212467777777443333322 222210 0245677777876
Q ss_pred CchhHHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHhcCCC-ceEEeeeccCCCCHHHHHHHHH-----HHH
Q 018210 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFST-AVFFLYEQIHPDDAFGQQMIRN-----LES 239 (359)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~~-~s~i~ye~i~p~d~Fg~~m~~~-----l~~ 239 (359)
+.. +.....-++++-.++.+++ ....+++.+.+...+ |.+++.|...+....-+...+. +..
T Consensus 114 ~~~----------~~~~~~D~I~~~~~l~~~~--~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (239)
T PRK00216 114 ALP----------FPDNSFDAVTIAFGLRNVP--DIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPL 181 (239)
T ss_pred cCC----------CCCCCccEEEEecccccCC--CHHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHHHHHHHhhhHH
Confidence 631 1112223444445555554 356778877776655 5566666655543211111110 000
Q ss_pred cCCCC-----------CCCCCCCChhHHHHHHHhCCCceeeecc
Q 018210 240 RGCAL-----------LGINATPTLLAKEKLFLDQGWQQAVAWD 272 (359)
Q Consensus 240 ~g~~l-----------~gi~~y~t~~~~~~r~~~~Gw~~~~~~d 272 (359)
.+..+ ..+..+++.+...+.+.++||+......
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 225 (239)
T PRK00216 182 IGKLISKNAEAYSYLAESIRAFPDQEELAAMLEEAGFERVRYRN 225 (239)
T ss_pred HHHHHcCCcHHHHHHHHHHHhCCCHHHHHHHHHhCCCceeeeee
Confidence 00000 0123456777888888999999776543
No 53
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=82.44 E-value=18 Score=27.05 Aligned_cols=93 Identities=13% Similarity=0.105 Sum_probs=54.5
Q ss_pred EeCCCCchhhhhhccCCCCCcEEEEecchhHHHHHHHHHhhcccccccccccccccccCCCccCCCeEEEeccCCCchhH
Q 018210 91 SLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRDIQML 170 (359)
Q Consensus 91 ~LGAGlDTr~fRL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~lv~~DL~~~~~l 170 (359)
-+|||.=...-.|... +...++=+|.-.-...+.+.... ..+..++..|..+.
T Consensus 2 diG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~----------------------~~~~~~~~~d~~~l--- 54 (95)
T PF08241_consen 2 DIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLK----------------------NEGVSFRQGDAEDL--- 54 (95)
T ss_dssp EET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTT----------------------TSTEEEEESBTTSS---
T ss_pred EecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhccc----------------------ccCchheeehHHhC---
Confidence 4778765555555444 34555555554443333333222 23344778888775
Q ss_pred HHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHhcCCCceEEe
Q 018210 171 NEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFL 219 (359)
Q Consensus 171 ~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~~~s~i~ 219 (359)
.+..+.=.++++-.++.|+ +...++++.+.+...++..++
T Consensus 55 -------~~~~~sfD~v~~~~~~~~~--~~~~~~l~e~~rvLk~gG~l~ 94 (95)
T PF08241_consen 55 -------PFPDNSFDVVFSNSVLHHL--EDPEAALREIYRVLKPGGRLV 94 (95)
T ss_dssp -------SS-TT-EEEEEEESHGGGS--SHHHHHHHHHHHHEEEEEEEE
T ss_pred -------ccccccccccccccceeec--cCHHHHHHHHHHHcCcCeEEe
Confidence 2333444588999999999 778888888888776665544
No 54
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=81.95 E-value=38 Score=30.41 Aligned_cols=152 Identities=10% Similarity=-0.021 Sum_probs=78.2
Q ss_pred cceEEEeCCCCchhhhhhccCCCCCcEEEEecch-hHHHHHHHHHhhcccccccccccccccccCCCccCCCeEEEeccC
Q 018210 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFI-EVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDL 164 (359)
Q Consensus 86 ~~QVV~LGAGlDTr~fRL~~~~~~~~~~~EvD~p-~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~lv~~DL 164 (359)
...|+.+|||.-+....+...+ . .+.-+|.. ..++..++.+...+ ..+.+++..|+
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~-~--~v~~iD~s~~~~~~a~~~~~~~~--------------------~~~~~~~~~d~ 102 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLG-A--NVTGIDASEENIEVAKLHAKKDP--------------------LLKIEYRCTSV 102 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcC-C--eEEEEeCCHHHHHHHHHHHHHcC--------------------CCceEEEeCCH
Confidence 4579999999877766665542 3 35555553 33444333333321 11345555554
Q ss_pred CCchhHHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHhcCCCceEEeeeccCCCC-H-HHHHHHHHHHHcCC
Q 018210 165 RDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDD-A-FGQQMIRNLESRGC 242 (359)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~~~s~i~ye~i~p~d-~-Fg~~m~~~l~~~g~ 242 (359)
.+. ... .+..--++++-.++.+... ...+++.+.+...++..+++.-.+... . +...+...+.....
T Consensus 103 ~~~------~~~---~~~~~D~i~~~~~l~~~~~--~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~ 171 (224)
T TIGR01983 103 EDL------AEK---GAKSFDVVTCMEVLEHVPD--PQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIV 171 (224)
T ss_pred HHh------hcC---CCCCccEEEehhHHHhCCC--HHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcC
Confidence 331 100 0123346777667777654 346788887766655444443333221 1 11111111111111
Q ss_pred CCC--CCCCCCChhHHHHHHHhCCCceeeec
Q 018210 243 ALL--GINATPTLLAKEKLFLDQGWQQAVAW 271 (359)
Q Consensus 243 ~l~--gi~~y~t~~~~~~r~~~~Gw~~~~~~ 271 (359)
+-. ....|.+.++..+.+.+.||+.++..
T Consensus 172 ~~~~~~~~~~~~~~~l~~~l~~~G~~i~~~~ 202 (224)
T TIGR01983 172 PKGTHDWEKFIKPSELTSWLESAGLRVKDVK 202 (224)
T ss_pred CCCcCChhhcCCHHHHHHHHHHcCCeeeeee
Confidence 111 11245677888889999999987654
No 55
>PLN02366 spermidine synthase
Probab=79.59 E-value=21 Score=34.81 Aligned_cols=45 Identities=16% Similarity=0.172 Sum_probs=29.8
Q ss_pred cceEEEeCCCCchhhhhhcc-CCCCCcEEEEecchhHHHHHHHHHhh
Q 018210 86 KKQILSLGAGFDTTYFQLQA-EGKAPHLYVELDFIEVTSKKAALIET 131 (359)
Q Consensus 86 ~~QVV~LGAGlDTr~fRL~~-~~~~~~~~~EvD~p~vi~~K~~~i~~ 131 (359)
.+.|+.+|+|-=.....+.. +....+..+|+| |+|++.=++.+..
T Consensus 92 pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD-~~Vi~~ar~~f~~ 137 (308)
T PLN02366 92 PKKVLVVGGGDGGVLREIARHSSVEQIDICEID-KMVIDVSKKFFPD 137 (308)
T ss_pred CCeEEEEcCCccHHHHHHHhCCCCCeEEEEECC-HHHHHHHHHhhhh
Confidence 56799999987666544433 212467889999 5677766665543
No 56
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=79.00 E-value=21 Score=33.84 Aligned_cols=56 Identities=14% Similarity=0.243 Sum_probs=41.6
Q ss_pred CCeEEEeccCCCchhHHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHhcCCCceEEee
Q 018210 155 DNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLY 220 (359)
Q Consensus 155 ~~y~lv~~DL~~~~~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~~~s~i~y 220 (359)
.+.++...|+.+.. . ....--++++-.||+|++++...++++.+.+...+|..++.
T Consensus 185 ~~V~F~~~dl~~~~-~---------~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~l 240 (264)
T smart00138 185 ERVRFAKHNLLAES-P---------PLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFL 240 (264)
T ss_pred CcCEEeeccCCCCC-C---------ccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEE
Confidence 45677777877642 1 11223488888999999999999999999998887766664
No 57
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=77.72 E-value=11 Score=32.63 Aligned_cols=104 Identities=13% Similarity=0.041 Sum_probs=62.2
Q ss_pred CCeEEEeccCCCchhHHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHhcCCC-ceEEeeeccCCCCHHHHHH
Q 018210 155 DNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFST-AVFFLYEQIHPDDAFGQQM 233 (359)
Q Consensus 155 ~~y~lv~~DL~~~~~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~~-~s~i~ye~i~p~d~Fg~~m 233 (359)
.+.+++..|..+.+ +..+.--++++-.++.+++ .-.+.++.+.+...+ |.+++.|.-.++..+.+.+
T Consensus 26 ~~i~~~~~d~~~lp----------~~~~~fD~v~~~~~l~~~~--d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~ 93 (160)
T PLN02232 26 KCIEWIEGDAIDLP----------FDDCEFDAVTMGYGLRNVV--DRLRAMKEMYRVLKPGSRVSILDFNKSNQSVTTFM 93 (160)
T ss_pred CceEEEEechhhCC----------CCCCCeeEEEecchhhcCC--CHHHHHHHHHHHcCcCeEEEEEECCCCChHHHHHH
Confidence 46778888877642 2222233556667777774 345677777776654 6677788776654443322
Q ss_pred HHHHH-HcCCC-------------C-CCCCCCCChhHHHHHHHhCCCceeee
Q 018210 234 IRNLE-SRGCA-------------L-LGINATPTLLAKEKLFLDQGWQQAVA 270 (359)
Q Consensus 234 ~~~l~-~~g~~-------------l-~gi~~y~t~~~~~~r~~~~Gw~~~~~ 270 (359)
..... ..+.| + .++..++++++..+.++++||+.+..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~ 145 (160)
T PLN02232 94 QGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACH 145 (160)
T ss_pred HHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceE
Confidence 22111 01111 1 13457789999999999999987754
No 58
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=77.55 E-value=58 Score=31.48 Aligned_cols=149 Identities=16% Similarity=0.170 Sum_probs=103.5
Q ss_pred ceEEEeCCCCchhhhhhccCCCCCcEEEEecchhHHHHH-HHHHhhcccccccccccccccccCCCccCCCeEEEeccCC
Q 018210 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKK-AALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (359)
Q Consensus 87 ~QVV~LGAGlDTr~fRL~~~~~~~~~~~EvD~p~vi~~K-~~~i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~lv~~DL~ 165 (359)
.-|+-+|||-=...-+.... -+++++=|++.+.+..- ++.+++.+ + ..+.+++..|.+
T Consensus 74 ~~lLDiGCGWG~l~~~aA~~--y~v~V~GvTlS~~Q~~~~~~r~~~~g------------------l-~~~v~v~l~d~r 132 (283)
T COG2230 74 MTLLDIGCGWGGLAIYAAEE--YGVTVVGVTLSEEQLAYAEKRIAARG------------------L-EDNVEVRLQDYR 132 (283)
T ss_pred CEEEEeCCChhHHHHHHHHH--cCCEEEEeeCCHHHHHHHHHHHHHcC------------------C-CcccEEEecccc
Confidence 57999999999998888776 38999999996555443 33355531 1 368889999999
Q ss_pred CchhHHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHhcCCCceEEeeecc-CCCC---HHHHHHHHHHHHcC
Q 018210 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQI-HPDD---AFGQQMIRNLESRG 241 (359)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~~~s~i~ye~i-~p~d---~Fg~~m~~~l~~~g 241 (359)
+.+.. || =++|=|.+-|+..+..+..++.+.+..+++..++.--| .+.. .+.....+.+
T Consensus 133 d~~e~--------fD-----rIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~yi---- 195 (283)
T COG2230 133 DFEEP--------FD-----RIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFIDKYI---- 195 (283)
T ss_pred ccccc--------cc-----eeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHHHHhC----
Confidence 86432 55 37788899999999999999999998887655444444 3332 3334333322
Q ss_pred CCCCCCCCCCChhHHHHHHHhCCCceeeeccHHHH
Q 018210 242 CALLGINATPTLLAKEKLFLDQGWQQAVAWDMLRV 276 (359)
Q Consensus 242 ~~l~gi~~y~t~~~~~~r~~~~Gw~~~~~~d~~~~ 276 (359)
++|- ..||.....+...+.||.+.....+..-
T Consensus 196 --FPgG-~lPs~~~i~~~~~~~~~~v~~~~~~~~h 227 (283)
T COG2230 196 --FPGG-ELPSISEILELASEAGFVVLDVESLRPH 227 (283)
T ss_pred --CCCC-cCCCHHHHHHHHHhcCcEEehHhhhcHH
Confidence 3432 2567777777789999998876444433
No 59
>PRK00536 speE spermidine synthase; Provisional
Probab=77.05 E-value=23 Score=33.78 Aligned_cols=118 Identities=13% Similarity=0.070 Sum_probs=72.3
Q ss_pred cceEEEeCCCCchhhhh-h-ccCCCCCcEEEEecchhHHHHHHHHHhhcccccccccccccccccCC--CccCCCeEEEe
Q 018210 86 KKQILSLGAGFDTTYFQ-L-QAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKG--EVLGDNYKLLP 161 (359)
Q Consensus 86 ~~QVV~LGAGlDTr~fR-L-~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~--~~~s~~y~lv~ 161 (359)
++.|+++|+| |--.-| + +.+ ..+..+|||- +|++.=++.+.... ..+. ++....-.. ....++|..|-
T Consensus 73 pk~VLIiGGG-DGg~~REvLkh~--~~v~mVeID~-~Vv~~~k~~lP~~~---~~~~-DpRv~l~~~~~~~~~~~fDVII 144 (262)
T PRK00536 73 LKEVLIVDGF-DLELAHQLFKYD--THVDFVQADE-KILDSFISFFPHFH---EVKN-NKNFTHAKQLLDLDIKKYDLII 144 (262)
T ss_pred CCeEEEEcCC-chHHHHHHHCcC--CeeEEEECCH-HHHHHHHHHCHHHH---Hhhc-CCCEEEeehhhhccCCcCCEEE
Confidence 6889999988 444444 3 333 4799999997 57776666555421 1111 111100000 11236799999
Q ss_pred ccCCCchhHHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHhcCCC
Q 018210 162 VDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFST 214 (359)
Q Consensus 162 ~DL~~~~~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~~ 214 (359)
+|........+.+..+ +. .--+++.+.=..|+.++....+.+.+.+.|+.
T Consensus 145 vDs~~~~~fy~~~~~~-L~--~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~~F~~ 194 (262)
T PRK00536 145 CLQEPDIHKIDGLKRM-LK--EDGVFISVAKHPLLEHVSMQNALKNMGDFFSI 194 (262)
T ss_pred EcCCCChHHHHHHHHh-cC--CCcEEEECCCCcccCHHHHHHHHHHHHhhCCc
Confidence 9965544443333221 21 11277777778888999999999999999984
No 60
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=76.78 E-value=55 Score=32.14 Aligned_cols=117 Identities=15% Similarity=0.035 Sum_probs=69.0
Q ss_pred cceEEEeCCCCchhhhhhcc---CCCCCcEEEEecch-hHHHHHHHHHhhcccccccccccccccccCCCccCCCeEEEe
Q 018210 86 KKQILSLGAGFDTTYFQLQA---EGKAPHLYVELDFI-EVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLP 161 (359)
Q Consensus 86 ~~QVV~LGAGlDTr~fRL~~---~~~~~~~~~EvD~p-~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~lv~ 161 (359)
...+|-||||.=+---.|.. .....++|+=||.- +.++.=.+.|... ..+.=..+-+.
T Consensus 77 ~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~------------------~~p~l~v~~l~ 138 (319)
T TIGR03439 77 GSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLG------------------NFSHVRCAGLL 138 (319)
T ss_pred CCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhc------------------cCCCeEEEEEE
Confidence 35899999996443222211 11135889988885 3444433334311 11122344577
Q ss_pred ccCCCchhHHHHHHhCCCCCCCcEEEEEec-ccccCCHHHHHHHHHHHHh-cCC-CceE-EeeeccC
Q 018210 162 VDLRDIQMLNEVINLANMDPSLPTFIIAEC-VLIYLDPDSSRAIVGWASK-TFS-TAVF-FLYEQIH 224 (359)
Q Consensus 162 ~DL~~~~~l~~~L~~~g~d~~~PTl~i~Eg-vL~YL~~~~~~~ll~~la~-~f~-~~s~-i~ye~i~ 224 (359)
+|+.+.-.| |.. ...++.|.++++=| .+--++++++.++|+.+++ ... ++.+ |..|...
T Consensus 139 gdy~~~l~~---l~~-~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k 201 (319)
T TIGR03439 139 GTYDDGLAW---LKR-PENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGCK 201 (319)
T ss_pred ecHHHHHhh---ccc-ccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCCC
Confidence 788774222 221 11135677888887 8889999999999999988 654 4443 3466654
No 61
>PRK08317 hypothetical protein; Provisional
Probab=75.76 E-value=59 Score=29.02 Aligned_cols=145 Identities=14% Similarity=0.101 Sum_probs=77.0
Q ss_pred cceEEEeCCCCchhhhhhccCCCCCcEEEEecchhHH--HHHHHHHhhcccccccccccccccccCCCccCCCeEEEecc
Q 018210 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVT--SKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVD 163 (359)
Q Consensus 86 ~~QVV~LGAGlDTr~fRL~~~~~~~~~~~EvD~p~vi--~~K~~~i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~lv~~D 163 (359)
...|+-+|||.-.....+.....+...++=+|..... ..+++ ... ...+.+++..|
T Consensus 20 ~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~-~~~---------------------~~~~~~~~~~d 77 (241)
T PRK08317 20 GDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKER-AAG---------------------LGPNVEFVRGD 77 (241)
T ss_pred CCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH-hhC---------------------CCCceEEEecc
Confidence 3579999999877666665431134456666653322 22222 111 13467777778
Q ss_pred CCCchhHHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHhcCCCceE-Eeeecc------CCC-CHHHHHHHH
Q 018210 164 LRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVF-FLYEQI------HPD-DAFGQQMIR 235 (359)
Q Consensus 164 L~~~~~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~~~s~-i~ye~i------~p~-d~Fg~~m~~ 235 (359)
+.+.+ +....--++++-.++.++.. ...+++.+.+...++.. ++.++- .+. ...-..+..
T Consensus 78 ~~~~~----------~~~~~~D~v~~~~~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (241)
T PRK08317 78 ADGLP----------FPDGSFDAVRSDRVLQHLED--PARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILN 145 (241)
T ss_pred cccCC----------CCCCCceEEEEechhhccCC--HHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHH
Confidence 76531 22233447777788888764 45677777776665544 444421 111 112222333
Q ss_pred HHHHcCCCCCCCCCCCChhHHHHHHHhCCCceeee
Q 018210 236 NLESRGCALLGINATPTLLAKEKLFLDQGWQQAVA 270 (359)
Q Consensus 236 ~l~~~g~~l~gi~~y~t~~~~~~r~~~~Gw~~~~~ 270 (359)
.+...+ ....+.....+.+.++||..+..
T Consensus 146 ~~~~~~------~~~~~~~~~~~~l~~aGf~~~~~ 174 (241)
T PRK08317 146 FWSDHF------ADPWLGRRLPGLFREAGLTDIEV 174 (241)
T ss_pred HHHhcC------CCCcHHHHHHHHHHHcCCCceeE
Confidence 222211 11223445667789999986653
No 62
>PRK00811 spermidine synthase; Provisional
Probab=75.55 E-value=32 Score=32.88 Aligned_cols=122 Identities=14% Similarity=0.143 Sum_probs=64.3
Q ss_pred cceEEEeCCCCchhhhhhccC-CCCCcEEEEecchhHHHHHHHHHhh-------cccccccccccccccccCCCccCCCe
Q 018210 86 KKQILSLGAGFDTTYFQLQAE-GKAPHLYVELDFIEVTSKKAALIET-------HGELKDKVGVTASISQAKGEVLGDNY 157 (359)
Q Consensus 86 ~~QVV~LGAGlDTr~fRL~~~-~~~~~~~~EvD~p~vi~~K~~~i~~-------~~~l~~~~g~~~~~~~~~~~~~s~~y 157 (359)
.+.|+.||||-=.....+... +...+..+|+|-. +++.=++.+.. .+.+.-+.++..... .-...+|
T Consensus 77 p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~-vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l----~~~~~~y 151 (283)
T PRK00811 77 PKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDER-VVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFV----AETENSF 151 (283)
T ss_pred CCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHH-HHHHHHHHhHHhccccccCCceEEEECchHHHH----hhCCCcc
Confidence 467899999876665544332 2346889999975 44444444432 111111111110000 0124578
Q ss_pred EEEeccCCCch---------hHHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHhcCCCc
Q 018210 158 KLLPVDLRDIQ---------MLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTA 215 (359)
Q Consensus 158 ~lv~~DL~~~~---------~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~~~ 215 (359)
.+|-+|+.++. ++.+.+.. -+.++- +++..+-..++.++....+.+.+.+.|+..
T Consensus 152 DvIi~D~~dp~~~~~~l~t~ef~~~~~~-~L~~gG--vlv~~~~~~~~~~~~~~~i~~tl~~~F~~v 215 (283)
T PRK00811 152 DVIIVDSTDPVGPAEGLFTKEFYENCKR-ALKEDG--IFVAQSGSPFYQADEIKDMHRKLKEVFPIV 215 (283)
T ss_pred cEEEECCCCCCCchhhhhHHHHHHHHHH-hcCCCc--EEEEeCCCcccCHHHHHHHHHHHHHHCCCE
Confidence 88888876541 11111111 132222 344445556667788888888888888764
No 63
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=74.78 E-value=37 Score=30.56 Aligned_cols=127 Identities=13% Similarity=0.157 Sum_probs=64.6
Q ss_pred cceEEEeCCCCchhhhhhccCCCCCcEEEEecchh-HHHHHHHHHhhcccccccccccccccccCCCccCCCeEEEeccC
Q 018210 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIE-VTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDL 164 (359)
Q Consensus 86 ~~QVV~LGAGlDTr~fRL~~~~~~~~~~~EvD~p~-vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~lv~~DL 164 (359)
...|+-+|||.=.....+... .++..++=||.-. .++.=++.+.... ..+..++.+|.
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~-~p~~~v~gVD~s~~~i~~a~~~~~~~~--------------------~~~v~~~~~d~ 99 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKA-NPDINFIGIEVHEPGVGKALKKIEEEG--------------------LTNLRLLCGDA 99 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHH-CCCccEEEEEechHHHHHHHHHHHHcC--------------------CCCEEEEecCH
Confidence 368999999998887777543 2455666666633 2222222222210 24577788777
Q ss_pred CCchhHHHHHHhCCCCCCCcEEEEEecccccCCH------HHHHHHHHHHHhcCCCceEEeeeccCCCCHHHHHHHHHHH
Q 018210 165 RDIQMLNEVINLANMDPSLPTFIIAECVLIYLDP------DSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIRNLE 238 (359)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~------~~~~~ll~~la~~f~~~s~i~ye~i~p~d~Fg~~m~~~l~ 238 (359)
.+ .+...+....+ -.+++ -....+... .....+++.+.+...++..+++-. +...+-+.|.+.++
T Consensus 100 ~~--~l~~~~~~~~~----D~V~~-~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~--~~~~~~~~~~~~~~ 170 (202)
T PRK00121 100 VE--VLLDMFPDGSL----DRIYL-NFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT--DWEGYAEYMLEVLS 170 (202)
T ss_pred HH--HHHHHcCcccc----ceEEE-ECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc--CCHHHHHHHHHHHH
Confidence 22 22222211112 22332 222222221 123567888887776655444322 23344566777776
Q ss_pred HcCC
Q 018210 239 SRGC 242 (359)
Q Consensus 239 ~~g~ 242 (359)
+.|.
T Consensus 171 ~~g~ 174 (202)
T PRK00121 171 AEGG 174 (202)
T ss_pred hCcc
Confidence 6663
No 64
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=73.72 E-value=42 Score=30.80 Aligned_cols=100 Identities=15% Similarity=0.255 Sum_probs=59.9
Q ss_pred cceEEEeCCCCchhhhhhccCCCCCcEEEEecchhHHHHHHHHHhhcccccccccccccccccCCCccCCCeEEEeccCC
Q 018210 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (359)
Q Consensus 86 ~~QVV~LGAGlDTr~fRL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~lv~~DL~ 165 (359)
...++-+|||-=..--+|... -..+...|+.-..+ +.=++.+.. ..+...+-.|+.
T Consensus 44 y~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al-~~Ar~Rl~~----------------------~~~V~~~~~dvp 99 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRAL-ARARERLAG----------------------LPHVEWIQADVP 99 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHH-HHHHHHTTT-----------------------SSEEEEES-TT
T ss_pred cceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHH-HHHHHhcCC----------------------CCCeEEEECcCC
Confidence 578999999998888888755 23445555544444 444444443 357889999997
Q ss_pred CchhHHHHHHhCCCCCCCcEEEEEecccccCCH-HHHHHHHHHHHhcCCCceEEee
Q 018210 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDP-DSSRAIVGWASKTFSTAVFFLY 220 (359)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~-~~~~~ll~~la~~f~~~s~i~y 220 (359)
+. |. ...|| .++++| |++||++ +....+++.+.+...++..+++
T Consensus 100 ~~--~P----~~~FD----LIV~SE-VlYYL~~~~~L~~~l~~l~~~L~pgG~LV~ 144 (201)
T PF05401_consen 100 EF--WP----EGRFD----LIVLSE-VLYYLDDAEDLRAALDRLVAALAPGGHLVF 144 (201)
T ss_dssp T---------SS-EE----EEEEES--GGGSSSHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred CC--CC----CCCee----EEEEeh-HhHcCCCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 62 31 11344 455555 9999985 7889999999887765444443
No 65
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=70.75 E-value=39 Score=33.95 Aligned_cols=148 Identities=11% Similarity=0.095 Sum_probs=82.5
Q ss_pred ceEEEeCCCCchhhhhhccCCCCCcEEEEecchh-HHHHHHHHHhhcccccccccccccccccCCCccCCCeEEEeccCC
Q 018210 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIE-VTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (359)
Q Consensus 87 ~QVV~LGAGlDTr~fRL~~~~~~~~~~~EvD~p~-vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~lv~~DL~ 165 (359)
..|+-+|||.=.....+... .+++++=+|.-+ .++.=++.+.. -+.++...|.+
T Consensus 169 ~rVLDIGcG~G~~a~~la~~--~g~~V~giDlS~~~l~~A~~~~~~-----------------------l~v~~~~~D~~ 223 (383)
T PRK11705 169 MRVLDIGCGWGGLARYAAEH--YGVSVVGVTISAEQQKLAQERCAG-----------------------LPVEIRLQDYR 223 (383)
T ss_pred CEEEEeCCCccHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHhcc-----------------------CeEEEEECchh
Confidence 57999999998887777654 356677777633 33222221211 12344444543
Q ss_pred CchhHHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHhcCCCceEEeeeccCCCCHH--HHHHHHHHHHcCCC
Q 018210 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAF--GQQMIRNLESRGCA 243 (359)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~~~s~i~ye~i~p~d~F--g~~m~~~l~~~g~~ 243 (359)
+. ...+| .+++-+++.++.......+++.+.+...++..++...+...+.- ....+ .+. -
T Consensus 224 ~l--------~~~fD-----~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~~~~i---~~y--i 285 (383)
T PRK11705 224 DL--------NGQFD-----RIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNVDPWI---NKY--I 285 (383)
T ss_pred hc--------CCCCC-----EEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCCCCCc---eee--e
Confidence 31 11244 56677777888888888899999888877665555444322100 00000 000 1
Q ss_pred CCCCCCCCChhHHHHHHHhCCCceeeeccHHHHHhc
Q 018210 244 LLGINATPTLLAKEKLFLDQGWQQAVAWDMLRVYST 279 (359)
Q Consensus 244 l~gi~~y~t~~~~~~r~~~~Gw~~~~~~d~~~~y~~ 279 (359)
+++ ..+|+++...+. .+.||......++..-|.+
T Consensus 286 fp~-g~lps~~~i~~~-~~~~~~v~d~~~~~~hy~~ 319 (383)
T PRK11705 286 FPN-GCLPSVRQIAQA-SEGLFVMEDWHNFGADYDR 319 (383)
T ss_pred cCC-CcCCCHHHHHHH-HHCCcEEEEEecChhhHHH
Confidence 121 135677775554 4468988776666655543
No 66
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=70.72 E-value=46 Score=32.05 Aligned_cols=107 Identities=13% Similarity=0.210 Sum_probs=53.7
Q ss_pred cceEEEeCCCCchh-hhhhccCCCCCcEEEEecc-hhHHHHHHHHHhhcccccccccccccccccCCCccCCCeEEEecc
Q 018210 86 KKQILSLGAGFDTT-YFQLQAEGKAPHLYVELDF-IEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVD 163 (359)
Q Consensus 86 ~~QVV~LGAGlDTr-~fRL~~~~~~~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~lv~~D 163 (359)
+..|+.+|+|==|. ...|......+..+.-+|. |+-++.-++++..... + +.+..++..|
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~-----------------L-~~~m~f~~~d 182 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLG-----------------L-SKRMSFITAD 182 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---H-----------------H--SSEEEEES-
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccc-----------------c-cCCeEEEecc
Confidence 46999999994444 6666643223555444444 3444555566663321 1 5678888888
Q ss_pred CCCchhHHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHhcCCCceEEeee
Q 018210 164 LRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYE 221 (359)
Q Consensus 164 L~~~~~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~~~s~i~ye 221 (359)
..+.. ..|. .+| .+|++ .|..|+.+.-.++|+.+++..++|..+++=
T Consensus 183 ~~~~~---~dl~--~~D----vV~lA--alVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 183 VLDVT---YDLK--EYD----VVFLA--ALVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp GGGG----GG------S----EEEE---TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hhccc---cccc--cCC----EEEEh--hhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 76642 1121 233 34444 577899999999999999999999988874
No 67
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=66.21 E-value=1.1e+02 Score=28.23 Aligned_cols=141 Identities=14% Similarity=0.091 Sum_probs=79.2
Q ss_pred cceEEEeCCCCchhhhhhccCCCCCcEEEEecchhHHHHHHHHHhhcccccccccccccccccCCCccCCCeEEEeccCC
Q 018210 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (359)
Q Consensus 86 ~~QVV~LGAGlDTr~fRL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~lv~~DL~ 165 (359)
...|+-+|||.-.....+... .++.+++=+|..+.+-.+.+. + ..+..++..|+.
T Consensus 32 ~~~vLDiGcG~G~~~~~la~~-~~~~~v~gvD~s~~~i~~a~~--~----------------------~~~~~~~~~d~~ 86 (258)
T PRK01683 32 PRYVVDLGCGPGNSTELLVER-WPAARITGIDSSPAMLAEARS--R----------------------LPDCQFVEADIA 86 (258)
T ss_pred CCEEEEEcccCCHHHHHHHHH-CCCCEEEEEECCHHHHHHHHH--h----------------------CCCCeEEECchh
Confidence 468999999998877777654 245678888875443333221 1 123455666665
Q ss_pred CchhHHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHhcCCCceEEeeeccCCCCHHH-HHHHHH--------
Q 018210 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFG-QQMIRN-------- 236 (359)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~~~s~i~ye~i~p~d~Fg-~~m~~~-------- 236 (359)
+.. . ...--++++-.++.+++. ...+++.+.+...+|..++..........+ ..|...
T Consensus 87 ~~~------~-----~~~fD~v~~~~~l~~~~d--~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 153 (258)
T PRK01683 87 SWQ------P-----PQALDLIFANASLQWLPD--HLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQ 153 (258)
T ss_pred ccC------C-----CCCccEEEEccChhhCCC--HHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHH
Confidence 420 0 112236667777788864 356788888777766555554322212122 222211
Q ss_pred -HHHcCCCCCCCCCCCChhHHHHHHHhCCCce
Q 018210 237 -LESRGCALLGINATPTLLAKEKLFLDQGWQQ 267 (359)
Q Consensus 237 -l~~~g~~l~gi~~y~t~~~~~~r~~~~Gw~~ 267 (359)
+...+. + ...+++++...+.+.+.|+..
T Consensus 154 ~~~~~~~-~--~~~~~~~~~~~~~l~~~g~~v 182 (258)
T PRK01683 154 NLPDRGA-R--RAPLPPPHAYYDALAPAACRV 182 (258)
T ss_pred Hhccccc-c--CcCCCCHHHHHHHHHhCCCce
Confidence 111110 1 124577888888898889764
No 68
>PRK06922 hypothetical protein; Provisional
Probab=61.74 E-value=2.4e+02 Score=30.75 Aligned_cols=175 Identities=11% Similarity=0.150 Sum_probs=93.3
Q ss_pred cceEEEeCCCCchhhhhhccCCCCCcEEEEecchhHHHHHHHH-HhhcccccccccccccccccCCCccCCCeEEEeccC
Q 018210 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAAL-IETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDL 164 (359)
Q Consensus 86 ~~QVV~LGAGlDTr~fRL~~~~~~~~~~~EvD~p~vi~~K~~~-i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~lv~~DL 164 (359)
...|+-+|||.=.....+... .++..++=+|....+-.+.+. +... ..+++++.+|.
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~-~P~~kVtGIDIS~~MLe~Ararl~~~---------------------g~~ie~I~gDa 476 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEE-TEDKRIYGIDISENVIDTLKKKKQNE---------------------GRSWNVIKGDA 476 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHhhhc---------------------CCCeEEEEcch
Confidence 358999999986665566544 367888999997765544432 2211 23567777776
Q ss_pred CCchhHHHHHHhCCCCCCCcEEEEEecc----cccCC-------HHHHHHHHHHHHhcCC-CceEEeeeccCCCCHH-H-
Q 018210 165 RDIQMLNEVINLANMDPSLPTFIIAECV----LIYLD-------PDSSRAIVGWASKTFS-TAVFFLYEQIHPDDAF-G- 230 (359)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~PTl~i~Egv----L~YL~-------~~~~~~ll~~la~~f~-~~s~i~ye~i~p~d~F-g- 230 (359)
.+... .+.+..--++++=.+ +.|++ .+...++++.+..... +|.+++.|.+.+.+.- .
T Consensus 477 ~dLp~--------~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~~E~~~l~r 548 (677)
T PRK06922 477 INLSS--------SFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIMTEDKRLMR 548 (677)
T ss_pred HhCcc--------ccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCccCCchhHHH
Confidence 55311 122222334443322 23443 4567788888776664 5677777876553321 1
Q ss_pred ------HHHHHHHHHcCCCCCCCC-CCC---------ChhHHHHHHHhCCC-ceeeeccHHHHHhcCCCHHHHHhhh
Q 018210 231 ------QQMIRNLESRGCALLGIN-ATP---------TLLAKEKLFLDQGW-QQAVAWDMLRVYSTFINPQERRRYL 290 (359)
Q Consensus 231 ------~~m~~~l~~~g~~l~gi~-~y~---------t~~~~~~r~~~~Gw-~~~~~~d~~~~y~~~l~~~er~Ri~ 290 (359)
..|...+.+...++++.. .+. ...+..+.+.++-| +......+.+-++.|.+.+-+.-++
T Consensus 549 ~Irf~D~dgl~f~nR~~~~Fkgr~I~~~~l~~~~~~l~~~da~e~L~s~dwp~~~~~~E~~Eqfg~~t~~~~~~~~~ 625 (677)
T PRK06922 549 VIRFKDAGGMKFLEQYVQEFKGRIIQYEVLADNTVKMPVNDAMEFLYTYTWGEDSFVHEVQEQFGIFTPNDYKDFVK 625 (677)
T ss_pred HhccccchHHHHHHHHHhhccCcEEEeccccceEEEEecchHHHHHHhcCCCCcccHHHHHHHHcCCCHHHHHHHHh
Confidence 012222222222333210 111 11455667777788 4455566667777654444444443
No 69
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=61.11 E-value=26 Score=35.23 Aligned_cols=118 Identities=14% Similarity=0.216 Sum_probs=67.6
Q ss_pred CcceEEEeCCCCchhhhhh--ccCCCCCcEEEEecchhHHHHHH--HHHhhccccccccccccccc--ccC--C--CccC
Q 018210 85 TKKQILSLGAGFDTTYFQL--QAEGKAPHLYVELDFIEVTSKKA--ALIETHGELKDKVGVTASIS--QAK--G--EVLG 154 (359)
Q Consensus 85 ~~~QVV~LGAGlDTr~fRL--~~~~~~~~~~~EvD~p~vi~~K~--~~i~~~~~l~~~~g~~~~~~--~~~--~--~~~s 154 (359)
+..-|+.||+| |-.+-|= +-++...++-+|+| |.+++.-+ ..+++.++- .+. ++.+. .++ . .-..
T Consensus 289 ~a~~vLvlGGG-DGLAlRellkyP~~~qI~lVdLD-P~miela~~~~vlr~~N~~--sf~-dpRv~Vv~dDAf~wlr~a~ 363 (508)
T COG4262 289 GARSVLVLGGG-DGLALRELLKYPQVEQITLVDLD-PRMIELASHATVLRALNQG--SFS-DPRVTVVNDDAFQWLRTAA 363 (508)
T ss_pred ccceEEEEcCC-chHHHHHHHhCCCcceEEEEecC-HHHHHHhhhhhHhhhhccC--Ccc-CCeeEEEeccHHHHHHhhc
Confidence 35679999988 7888883 33322356666776 56776544 555543210 010 11110 000 0 1124
Q ss_pred CCeEEEeccCCCchh----------HHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHh
Q 018210 155 DNYKLLPVDLRDIQM----------LNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASK 210 (359)
Q Consensus 155 ~~y~lv~~DL~~~~~----------l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~ 210 (359)
+.|..+-+||.|++. +-..+.. .+ ..--+++.+.-..|.+|+.-..+++++.+
T Consensus 364 ~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~-~l--~e~Gl~VvQags~y~tp~vfw~i~aTik~ 426 (508)
T COG4262 364 DMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSR-HL--AETGLMVVQAGSPYFTPRVFWRIDATIKS 426 (508)
T ss_pred ccccEEEEeCCCCCCcchhhhhhHHHHHHHHH-hc--CcCceEEEecCCCccCCceeeeehhHHHh
Confidence 678899999998632 1112211 11 12237888888899999998888888876
No 70
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=60.51 E-value=43 Score=31.38 Aligned_cols=120 Identities=17% Similarity=0.210 Sum_probs=61.8
Q ss_pred cceEEEeCCCCchhhhhhccC-CCCCcEEEEecchhHHHHHHHHHhhcc------cccccccccccccccCCCccCC-Ce
Q 018210 86 KKQILSLGAGFDTTYFQLQAE-GKAPHLYVELDFIEVTSKKAALIETHG------ELKDKVGVTASISQAKGEVLGD-NY 157 (359)
Q Consensus 86 ~~QVV~LGAGlDTr~fRL~~~-~~~~~~~~EvD~p~vi~~K~~~i~~~~------~l~~~~g~~~~~~~~~~~~~s~-~y 157 (359)
.+.|+.||+|-=..+..+... ....+..+|+|-. |++.=++.+.... .++=+.++..... .-..+ .|
T Consensus 77 p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~-Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l----~~~~~~~y 151 (246)
T PF01564_consen 77 PKRVLIIGGGDGGTARELLKHPPVESITVVEIDPE-VVELARKYFPEFSEGLDDPRVRIIIGDGRKFL----KETQEEKY 151 (246)
T ss_dssp T-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HH-HHHHHHHHTHHHHTTGGSTTEEEEESTHHHHH----HTSSST-E
T ss_pred cCceEEEcCCChhhhhhhhhcCCcceEEEEecChH-HHHHHHHhchhhccccCCCceEEEEhhhHHHH----HhccCCcc
Confidence 567888887655555554432 1246899999964 6665555554421 1111111100000 01123 79
Q ss_pred EEEeccCCCch---------hHHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHhcCC
Q 018210 158 KLLPVDLRDIQ---------MLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFS 213 (359)
Q Consensus 158 ~lv~~DL~~~~---------~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~ 213 (359)
.+|-+|+.++. ++-+.+... +. .-=+++..+-..++.++....+.+.+.+.|+
T Consensus 152 DvIi~D~~dp~~~~~~l~t~ef~~~~~~~-L~--~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~ 213 (246)
T PF01564_consen 152 DVIIVDLTDPDGPAPNLFTREFYQLCKRR-LK--PDGVLVLQAGSPFLHPELFKSILKTLRSVFP 213 (246)
T ss_dssp EEEEEESSSTTSCGGGGSSHHHHHHHHHH-EE--EEEEEEEEEEETTTTHHHHHHHHHHHHTTSS
T ss_pred cEEEEeCCCCCCCcccccCHHHHHHHHhh-cC--CCcEEEEEccCcccchHHHHHHHHHHHHhCC
Confidence 99999998831 122222110 11 1113444445567788888888888888887
No 71
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=59.91 E-value=1.3e+02 Score=26.85 Aligned_cols=139 Identities=12% Similarity=0.189 Sum_probs=74.6
Q ss_pred cceEEEeCCCCchhhhhhccCCCCCcEEEEecchhHHHHHHHHHhhcccccccccccccccccCCCccCCCeEEEeccCC
Q 018210 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (359)
Q Consensus 86 ~~QVV~LGAGlDTr~fRL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~lv~~DL~ 165 (359)
...|+-+|||.-.....+.... +...++=+|.........+. .. ..+..++.+|+.
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~--~~---------------------~~~~~~~~~d~~ 90 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKT--KL---------------------SENVQFICGDAE 90 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHH--hc---------------------CCCCeEEecchh
Confidence 3579999999987666665442 45555555653332222211 00 124566777776
Q ss_pred CchhHHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHhcCCCceEEeeeccCCCCHHHHHHHHHHHHcCCCCC
Q 018210 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIRNLESRGCALL 245 (359)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~~~s~i~ye~i~p~d~Fg~~m~~~l~~~g~~l~ 245 (359)
+.. +.....-++++-.++.|+.. ..++++.+.+...++..+++....... + ..+...+...+
T Consensus 91 ~~~----------~~~~~fD~vi~~~~l~~~~~--~~~~l~~~~~~L~~~G~l~~~~~~~~~-~-~~~~~~~~~~~---- 152 (240)
T TIGR02072 91 KLP----------LEDSSFDLIVSNLALQWCDD--LSQALSELARVLKPGGLLAFSTFGPGT-L-HELRQSFGQHG---- 152 (240)
T ss_pred hCC----------CCCCceeEEEEhhhhhhccC--HHHHHHHHHHHcCCCcEEEEEeCCccC-H-HHHHHHHHHhc----
Confidence 531 22234458888888888843 456788887766655455544333222 1 11122222222
Q ss_pred CCCCCCChhHHHHHHHhCCCceee
Q 018210 246 GINATPTLLAKEKLFLDQGWQQAV 269 (359)
Q Consensus 246 gi~~y~t~~~~~~r~~~~Gw~~~~ 269 (359)
..|.+.+...+.+.+. |....
T Consensus 153 --~~~~~~~~~~~~l~~~-f~~~~ 173 (240)
T TIGR02072 153 --LRYLSLDELKALLKNS-FELLT 173 (240)
T ss_pred --cCCCCHHHHHHHHHHh-cCCcE
Confidence 2355666666777665 65443
No 72
>PRK05785 hypothetical protein; Provisional
Probab=59.42 E-value=1.4e+02 Score=27.30 Aligned_cols=135 Identities=10% Similarity=0.120 Sum_probs=71.2
Q ss_pred ceEEEeCCCCchhhhhhccCCCCCcEEEEecch-hHHHHHHHHHhhcccccccccccccccccCCCccCCCeEEEeccCC
Q 018210 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFI-EVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (359)
Q Consensus 87 ~QVV~LGAGlDTr~fRL~~~~~~~~~~~EvD~p-~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~lv~~DL~ 165 (359)
..|+-+|||.=.....+... .+..++=+|+- ++++.-++ +. ..+.+|..
T Consensus 53 ~~VLDlGcGtG~~~~~l~~~--~~~~v~gvD~S~~Ml~~a~~---~~-------------------------~~~~~d~~ 102 (226)
T PRK05785 53 KKVLDVAAGKGELSYHFKKV--FKYYVVALDYAENMLKMNLV---AD-------------------------DKVVGSFE 102 (226)
T ss_pred CeEEEEcCCCCHHHHHHHHh--cCCEEEEECCCHHHHHHHHh---cc-------------------------ceEEechh
Confidence 58999999998877777654 14678888884 44433211 00 11233333
Q ss_pred CchhHHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHhcCCCceEEeeeccCCCCHHHHHHHHHHHH------
Q 018210 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIRNLES------ 239 (359)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~~~s~i~ye~i~p~d~Fg~~m~~~l~~------ 239 (359)
+. .+..+.--++++-.++.+++. ..+.++.+.+...+. .++.|.-.|+..+.+........
T Consensus 103 ~l----------p~~d~sfD~v~~~~~l~~~~d--~~~~l~e~~RvLkp~-~~ile~~~p~~~~~~~~~~~y~~~~~P~~ 169 (226)
T PRK05785 103 AL----------PFRDKSFDVVMSSFALHASDN--IEKVIAEFTRVSRKQ-VGFIAMGKPDNVIKRKYLSFYLRYIMPYI 169 (226)
T ss_pred hC----------CCCCCCEEEEEecChhhccCC--HHHHHHHHHHHhcCc-eEEEEeCCCCcHHHHHHHHHHHHHHHHHH
Confidence 22 232233335555556666543 345666666655552 33556556654332222111110
Q ss_pred ------cCCC---CC-CCCCCCChhHHHHHHHhCC
Q 018210 240 ------RGCA---LL-GINATPTLLAKEKLFLDQG 264 (359)
Q Consensus 240 ------~g~~---l~-gi~~y~t~~~~~~r~~~~G 264 (359)
.... |. ++..||+.++..+.++++|
T Consensus 170 ~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~~~~~~ 204 (226)
T PRK05785 170 ACLAGAKCRDYKYIYYIYERLPTNSFHREIFEKYA 204 (226)
T ss_pred HHHhcCChHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 0011 11 5667788888888887753
No 73
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=57.09 E-value=1.4e+02 Score=28.25 Aligned_cols=44 Identities=16% Similarity=0.225 Sum_probs=27.6
Q ss_pred cceEEEeCCCCchhhhhhccCC-CCCcEEEEecchhHHHHHHHHHh
Q 018210 86 KKQILSLGAGFDTTYFQLQAEG-KAPHLYVELDFIEVTSKKAALIE 130 (359)
Q Consensus 86 ~~QVV~LGAGlDTr~fRL~~~~-~~~~~~~EvD~p~vi~~K~~~i~ 130 (359)
.+-|+.+|||.=.....+.... ...+..+|+|- ++++.=++.+.
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~-~vi~~a~~~~~ 117 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDE-KVIELSKKFLP 117 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCH-HHHHHHHHHhH
Confidence 4589999999766554443221 24688999984 55555444443
No 74
>PHA03412 putative methyltransferase; Provisional
Probab=56.94 E-value=11 Score=35.54 Aligned_cols=34 Identities=29% Similarity=0.394 Sum_probs=27.9
Q ss_pred ceEEEeCCCCchhhhhhccCC-CCCcEEEEecchh
Q 018210 87 KQILSLGAGFDTTYFQLQAEG-KAPHLYVELDFIE 120 (359)
Q Consensus 87 ~QVV~LGAGlDTr~fRL~~~~-~~~~~~~EvD~p~ 120 (359)
.-+.+-|||-||-+||=.|.+ .+-+.+++|||-+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (241)
T PHA03412 194 GLEMNPGCGIDTGYYLEDWKGVKPLCEVVCMEFNE 228 (241)
T ss_pred CeeecCCCCccceeehhhccCCCccceEEEEeecC
Confidence 358899999999999988876 4557889999853
No 75
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=56.61 E-value=1e+02 Score=29.70 Aligned_cols=121 Identities=17% Similarity=0.156 Sum_probs=66.3
Q ss_pred cceEEEeCCCCchhhhhhccC-CCCCcEEEEecchhHHHHHHHHHhhccccccccccccc--ccccCC----CccCCCeE
Q 018210 86 KKQILSLGAGFDTTYFQLQAE-GKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTAS--ISQAKG----EVLGDNYK 158 (359)
Q Consensus 86 ~~QVV~LGAGlDTr~fRL~~~-~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~--~~~~~~----~~~s~~y~ 158 (359)
.+-|+.+|.|-=.....+... ....++.+|||- +|++.=++.+........ ++. .....| .-.+..|.
T Consensus 77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~-~Vi~~ar~~l~~~~~~~~----dpRv~i~i~Dg~~~v~~~~~~fD 151 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDP-AVIELARKYLPEPSGGAD----DPRVEIIIDDGVEFLRDCEEKFD 151 (282)
T ss_pred CCeEEEECCCccHHHHHHHhcCCcceEEEEEcCH-HHHHHHHHhccCcccccC----CCceEEEeccHHHHHHhCCCcCC
Confidence 357888887765554444322 136789999995 788888888776431110 111 111111 01133688
Q ss_pred EEeccCCCch---------hHHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHhcCCC
Q 018210 159 LLPVDLRDIQ---------MLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFST 214 (359)
Q Consensus 159 lv~~DL~~~~---------~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~~ 214 (359)
+|-+|..|.. .+-+.+.. .+ +.+=++++.+-..++..+.....-+.+...|+.
T Consensus 152 vIi~D~tdp~gp~~~Lft~eFy~~~~~-~L--~~~Gi~v~q~~~~~~~~~~~~~~~~~~~~vf~~ 213 (282)
T COG0421 152 VIIVDSTDPVGPAEALFTEEFYEGCRR-AL--KEDGIFVAQAGSPFLQDEEIALAYRNVSRVFSI 213 (282)
T ss_pred EEEEcCCCCCCcccccCCHHHHHHHHH-hc--CCCcEEEEecCCcccchHHHHHHHHHHHhhccc
Confidence 8888888861 11111111 01 223356666555777776666666666666654
No 76
>PTZ00146 fibrillarin; Provisional
Probab=56.13 E-value=2e+02 Score=27.94 Aligned_cols=134 Identities=18% Similarity=0.179 Sum_probs=68.4
Q ss_pred ceEEEeCCCCchhhhhhccCCCCCcEEEEecchhHHHHHHHHHhhcccccccccccccccccCCCccCCCeEEEeccCCC
Q 018210 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRD 166 (359)
Q Consensus 87 ~QVV~LGAGlDTr~fRL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~lv~~DL~~ 166 (359)
.-|+-||||.=+..--+...--+.-.+|=||+.+-+.. .++.... ...|...+-.|.++
T Consensus 134 ~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~--dLl~~ak-------------------~r~NI~~I~~Da~~ 192 (293)
T PTZ00146 134 SKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGR--DLTNMAK-------------------KRPNIVPIIEDARY 192 (293)
T ss_pred CEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHH--HHHHHhh-------------------hcCCCEEEECCccC
Confidence 46999999998876666543112336777776532221 2222210 02456677778776
Q ss_pred chhHHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHhcCCC-ceEEeeeccCCCCHHHHHHHHHHHHcCCCCC
Q 018210 167 IQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFST-AVFFLYEQIHPDDAFGQQMIRNLESRGCALL 245 (359)
Q Consensus 167 ~~~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~~-~s~i~ye~i~p~d~Fg~~m~~~l~~~g~~l~ 245 (359)
...... +....- ++++-. ..+++.+.++..+.....+ |.+++ + +. +.
T Consensus 193 p~~y~~------~~~~vD-vV~~Dv----a~pdq~~il~~na~r~LKpGG~~vI-~-ik-------------------a~ 240 (293)
T PTZ00146 193 PQKYRM------LVPMVD-VIFADV----AQPDQARIVALNAQYFLKNGGHFII-S-IK-------------------AN 240 (293)
T ss_pred hhhhhc------ccCCCC-EEEEeC----CCcchHHHHHHHHHHhccCCCEEEE-E-Ee-------------------cc
Confidence 321111 111122 222222 1467777777666665555 44444 2 21 11
Q ss_pred CCCCCCChhHH----HHHHHhCCCceeeeccH
Q 018210 246 GINATPTLLAK----EKLFLDQGWQQAVAWDM 273 (359)
Q Consensus 246 gi~~y~t~~~~----~~r~~~~Gw~~~~~~d~ 273 (359)
+++.-+++++. .+.+++.||+..+..++
T Consensus 241 ~id~g~~pe~~f~~ev~~L~~~GF~~~e~v~L 272 (293)
T PTZ00146 241 CIDSTAKPEVVFASEVQKLKKEGLKPKEQLTL 272 (293)
T ss_pred ccccCCCHHHHHHHHHHHHHHcCCceEEEEec
Confidence 22333334443 57788889987665543
No 77
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process
Probab=53.60 E-value=92 Score=25.20 Aligned_cols=72 Identities=13% Similarity=0.275 Sum_probs=46.3
Q ss_pred ccccCCHHHHHHHHHHHHhcCCCceEEeeeccCCCCHHHHHHHHHHHHcCCCCCCCCC----CCChhH-HHHHHHhCCCc
Q 018210 192 VLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIRNLESRGCALLGINA----TPTLLA-KEKLFLDQGWQ 266 (359)
Q Consensus 192 vL~YL~~~~~~~ll~~la~~f~~~s~i~ye~i~p~d~Fg~~m~~~l~~~g~~l~gi~~----y~t~~~-~~~r~~~~Gw~ 266 (359)
||.|-+++.+.++|+.++++......+.|= |..+ ++..+...|.=+++-+. ||-.++ ..+.+.+.||.
T Consensus 4 vLIHYp~~d~~~~l~~La~~t~~~~ifTfA---P~T~----~L~~m~~iG~lFP~~dRsp~i~~~~e~~l~~~l~~~g~~ 76 (97)
T PF07109_consen 4 VLIHYPAEDAAQMLAHLASRTRGSLIFTFA---PRTP----LLALMHAIGKLFPRPDRSPRIYPHREEDLRRALAAAGWR 76 (97)
T ss_pred eEeccCHHHHHHHHHHHHHhccCcEEEEEC---CCCH----HHHHHHHHhccCCCCCCCCcEEEeCHHHHHHHHHhCCCe
Confidence 678889999999999999976655555553 3332 33344555665664443 333344 44556889998
Q ss_pred eeee
Q 018210 267 QAVA 270 (359)
Q Consensus 267 ~~~~ 270 (359)
....
T Consensus 77 ~~r~ 80 (97)
T PF07109_consen 77 IGRT 80 (97)
T ss_pred eeec
Confidence 7653
No 78
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=52.47 E-value=1.9e+02 Score=26.54 Aligned_cols=138 Identities=8% Similarity=0.016 Sum_probs=72.6
Q ss_pred cceEEEeCCCCchhhhhhccCCCCCcEEEEecc-hhHHHHHHHHHhhcccccccccccccccccCCCccCCCeEEEeccC
Q 018210 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDF-IEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDL 164 (359)
Q Consensus 86 ~~QVV~LGAGlDTr~fRL~~~~~~~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~lv~~DL 164 (359)
...|+-+|||.-.....+... +..++-+|. |+.++.-++... ...++..|+
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~-------------------------~~~~~~~d~ 94 (251)
T PRK10258 43 FTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDA-------------------------ADHYLAGDI 94 (251)
T ss_pred CCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC-------------------------CCCEEEcCc
Confidence 357999999986555455443 456777777 444332221110 123455666
Q ss_pred CCchhHHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHhcCCCceEEeeeccCCCCHHHHHHHHHHHHcCCCC
Q 018210 165 RDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIRNLESRGCAL 244 (359)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~~~s~i~ye~i~p~d~Fg~~m~~~l~~~g~~l 244 (359)
.+.+ +....--++++-.++.+++. ...+|+.+.+...++..+++-...+.. + ..+.+.+...+.+
T Consensus 95 ~~~~----------~~~~~fD~V~s~~~l~~~~d--~~~~l~~~~~~Lk~gG~l~~~~~~~~~-~-~el~~~~~~~~~~- 159 (251)
T PRK10258 95 ESLP----------LATATFDLAWSNLAVQWCGN--LSTALRELYRVVRPGGVVAFTTLVQGS-L-PELHQAWQAVDER- 159 (251)
T ss_pred ccCc----------CCCCcEEEEEECchhhhcCC--HHHHHHHHHHHcCCCeEEEEEeCCCCc-h-HHHHHHHHHhccC-
Confidence 5531 11112235566556666543 457778777777665555554433321 1 1222223322222
Q ss_pred CCCCCCCChhHHHHHHHhCCCc
Q 018210 245 LGINATPTLLAKEKLFLDQGWQ 266 (359)
Q Consensus 245 ~gi~~y~t~~~~~~r~~~~Gw~ 266 (359)
.....|.+.++..+.+...|+.
T Consensus 160 ~~~~~~~~~~~l~~~l~~~~~~ 181 (251)
T PRK10258 160 PHANRFLPPDAIEQALNGWRYQ 181 (251)
T ss_pred CccccCCCHHHHHHHHHhCCce
Confidence 2344677888888777766654
No 79
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=51.39 E-value=1.9e+02 Score=26.34 Aligned_cols=115 Identities=10% Similarity=0.064 Sum_probs=70.0
Q ss_pred ceEEEeCCCCchhhhhhccCCCCCcEEEEecchhHHHHHHHHHhhcccccc--cccccccccccCCCccCCCeEEEeccC
Q 018210 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKD--KVGVTASISQAKGEVLGDNYKLLPVDL 164 (359)
Q Consensus 87 ~QVV~LGAGlDTr~fRL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~--~~g~~~~~~~~~~~~~s~~y~lv~~DL 164 (359)
..|+.+|||.-.-+-.|... +..+.=||+-++.-.+.. .+...... .++. .......+.+++-+|+
T Consensus 36 ~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~--~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~D~ 103 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFF--AENGLTPTVTQQGE-------FTRYRAGNIEIFCGDF 103 (213)
T ss_pred CeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHH--HHcCCCcceecccc-------ceeeecCceEEEEccC
Confidence 58999999997767777765 678888998665444421 11100000 0000 0001245788899999
Q ss_pred CCchhHHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHhcCCCceEEeeec
Q 018210 165 RDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQ 222 (359)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~~~s~i~ye~ 222 (359)
.+.+. . . . ..-.+++-=++++-++++.=...++.+.+...+|..+++.-
T Consensus 104 ~~~~~-~--~----~--~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~ 152 (213)
T TIGR03840 104 FALTA-A--D----L--GPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLIT 152 (213)
T ss_pred CCCCc-c--c----C--CCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 87521 0 0 0 11235555577789999999999999999888776544443
No 80
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=50.98 E-value=2.4e+02 Score=27.19 Aligned_cols=126 Identities=17% Similarity=0.166 Sum_probs=76.9
Q ss_pred cceEEEeCCCCchhhhhhccCC---CCCcEEEEecch-hHHHHHHHHHhh-cccccccccccccccccCCCccCCCeEEE
Q 018210 86 KKQILSLGAGFDTTYFQLQAEG---KAPHLYVELDFI-EVTSKKAALIET-HGELKDKVGVTASISQAKGEVLGDNYKLL 160 (359)
Q Consensus 86 ~~QVV~LGAGlDTr~fRL~~~~---~~~~~~~EvD~p-~vi~~K~~~i~~-~~~l~~~~g~~~~~~~~~~~~~s~~y~lv 160 (359)
.+-.|-||+|..|..-+|...- ....+|+-||.. ++++.-.+.|.. .| .=...-+
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~--------------------~l~v~~l 138 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYP--------------------GLEVNAL 138 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCC--------------------CCeEeeh
Confidence 6899999999999877765431 123789888885 445555555543 21 1122333
Q ss_pred eccCCCchhHHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHhcCCCce-E-EeeeccCCC--------C---
Q 018210 161 PVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAV-F-FLYEQIHPD--------D--- 227 (359)
Q Consensus 161 ~~DL~~~~~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~~~s-~-i~ye~i~p~--------d--- 227 (359)
+.| ++..|.... ......++..--.|--++|+....++..+.....+|- + +..|.++|. |
T Consensus 139 ~~~------~~~~La~~~-~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k~Ae~Le~AYdDp~g 211 (321)
T COG4301 139 CGD------YELALAELP-RGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLRKPAERLEAAYDDPQG 211 (321)
T ss_pred hhh------HHHHHhccc-CCCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEeccccCHHHHHHHhhcCccc
Confidence 333 444454322 2223334444445678999999999999999887663 3 446777662 3
Q ss_pred ---HHHHHHHHHHH
Q 018210 228 ---AFGQQMIRNLE 238 (359)
Q Consensus 228 ---~Fg~~m~~~l~ 238 (359)
.|-+-|+.|+.
T Consensus 212 VTa~FnlNvLa~lN 225 (321)
T COG4301 212 VTAEFNLNVLAHLN 225 (321)
T ss_pred hHHHHHHHHHHHHH
Confidence 35566777764
No 81
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=50.58 E-value=78 Score=29.67 Aligned_cols=72 Identities=17% Similarity=0.233 Sum_probs=55.2
Q ss_pred CeEEEeccCCCchhHHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHhcCCCceEEeeeccCCCCHHHHHHHH
Q 018210 156 NYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIR 235 (359)
Q Consensus 156 ~y~lv~~DL~~~~~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~~~s~i~ye~i~p~d~Fg~~m~~ 235 (359)
.|.++..||.+-+.| .|+........|+|+...+. --++.-+++.|-+.++++. .+.|.|++-|.+.+
T Consensus 34 ~yE~veedl~~Ks~~--ll~~np~hkKVPvL~Hn~k~-----i~ESliiveYiDe~w~~~~-----~iLP~DPy~Ra~ar 101 (231)
T KOG0406|consen 34 PYEYVEEDLTNKSEW--LLEKNPVHKKVPVLEHNGKP-----ICESLIIVEYIDETWPSGP-----PILPSDPYERAQAR 101 (231)
T ss_pred ceEEEecCCCCCCHH--HHHhccccccCCEEEECCce-----ehhhHHHHHHHHhhccCCC-----CCCCCCHHHHHHHH
Confidence 499999999864455 34555588899999999998 3477888999999998643 46799988887766
Q ss_pred HHHH
Q 018210 236 NLES 239 (359)
Q Consensus 236 ~l~~ 239 (359)
-+..
T Consensus 102 fwa~ 105 (231)
T KOG0406|consen 102 FWAE 105 (231)
T ss_pred HHHH
Confidence 6543
No 82
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=50.32 E-value=1.1e+02 Score=30.43 Aligned_cols=139 Identities=15% Similarity=0.178 Sum_probs=94.6
Q ss_pred cceEEEeCCCCchhhhhhccCCCCCcEEEEecchhHHHHHHHHHhhcccccccccccccccccCCCccCCCeEEEeccCC
Q 018210 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (359)
Q Consensus 86 ~~QVV~LGAGlDTr~fRL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~lv~~DL~ 165 (359)
..-.|-+|+|.=...=++... ++.+.-++.|.|.+++.+..+- .....+.+|..
T Consensus 178 v~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp~v~~~a~~~~-------------------------~gV~~v~gdmf 231 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLPFVLAAAPYLA-------------------------PGVEHVAGDMF 231 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHh-CCCCceeecCHHHHHhhhhhhc-------------------------CCcceeccccc
Confidence 567899999997776666654 6889999999999998766442 11455666765
Q ss_pred CchhHHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHhcCC-CceEEeeeccCCC-CHHH---------HHHH
Q 018210 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFS-TAVFFLYEQIHPD-DAFG---------QQMI 234 (359)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~-~~s~i~ye~i~p~-d~Fg---------~~m~ 234 (359)
+. ..++ -++...-||.-++.+..-++|+.|.+.++ +|-.++-|.+.|. +.++ .-|.
T Consensus 232 q~------~P~~-------daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~l 298 (342)
T KOG3178|consen 232 QD------TPKG-------DAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLL 298 (342)
T ss_pred cc------CCCc-------CeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHH
Confidence 41 1111 18888999999999999999999999886 4788899998884 3332 1122
Q ss_pred HH-HHHcCCCCCCCCCCCChhHHHHHHHhCCCceeee
Q 018210 235 RN-LESRGCALLGINATPTLLAKEKLFLDQGWQQAVA 270 (359)
Q Consensus 235 ~~-l~~~g~~l~gi~~y~t~~~~~~r~~~~Gw~~~~~ 270 (359)
.. +.+-|-.. |..+-...+.+.||.+...
T Consensus 299 m~~~~~~Gker-------t~~e~q~l~~~~gF~~~~~ 328 (342)
T KOG3178|consen 299 MLTQTSGGKER-------TLKEFQALLPEEGFPVCMV 328 (342)
T ss_pred HHHHhccceec-------cHHHHHhcchhhcCceeEE
Confidence 22 22223221 3444455567889987764
No 83
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=49.90 E-value=95 Score=31.96 Aligned_cols=121 Identities=17% Similarity=0.249 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCCcCCCcceEEEeCCCCchhhhhhccCC---CCCcEEEEecc-h-hHHHHHHHHHhhcccc
Q 018210 61 RWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEG---KAPHLYVELDF-I-EVTSKKAALIETHGEL 135 (359)
Q Consensus 61 R~~~id~~i~~Fl~~~~~~~~~~~~~~QVV~LGAGlDTr~fRL~~~~---~~~~~~~EvD~-p-~vi~~K~~~i~~~~~l 135 (359)
|...-+.+|.+.+.+.........+.+.|+.+|||.-++..+-...+ ...+++|=|.- | .++..| ++++.+.
T Consensus 162 KY~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~-~~v~~n~-- 238 (448)
T PF05185_consen 162 KYDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQ-KRVNANG-- 238 (448)
T ss_dssp HHHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHH-HHHHHTT--
T ss_pred HHHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHH-HHHHhcC--
Confidence 44444444445555433211000013679999999999976543221 12356666654 3 344444 3334421
Q ss_pred cccccccccccccCCCccCCCeEEEeccCCCchhHHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHhcC
Q 018210 136 KDKVGVTASISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF 212 (359)
Q Consensus 136 ~~~~g~~~~~~~~~~~~~s~~y~lv~~DL~~~~~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f 212 (359)
. .++.++|..|.++.+ + +.+.=++|+|.+=.++..|-+-+.|....+..
T Consensus 239 ----------------w-~~~V~vi~~d~r~v~-l----------pekvDIIVSElLGsfg~nEl~pE~Lda~~rfL 287 (448)
T PF05185_consen 239 ----------------W-GDKVTVIHGDMREVE-L----------PEKVDIIVSELLGSFGDNELSPECLDAADRFL 287 (448)
T ss_dssp ----------------T-TTTEEEEES-TTTSC-H----------SS-EEEEEE---BTTBTTTSHHHHHHHGGGGE
T ss_pred ----------------C-CCeEEEEeCcccCCC-C----------CCceeEEEEeccCCccccccCHHHHHHHHhhc
Confidence 1 567999999999962 2 22556999999988998888888887665533
No 84
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=48.85 E-value=1.9e+02 Score=25.59 Aligned_cols=126 Identities=8% Similarity=0.136 Sum_probs=69.0
Q ss_pred cceEEEeCCCCchhhhhhccCCCCCcEEEEecchh-HHHHHHHHHhhcccccccccccccccccCCCccCCCeEEEeccC
Q 018210 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIE-VTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDL 164 (359)
Q Consensus 86 ~~QVV~LGAGlDTr~fRL~~~~~~~~~~~EvD~p~-vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~lv~~DL 164 (359)
...|+-+|||.=.....+... .++..++-||.-. .++.=++.+.+.. -.|.+++.+|+
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~-~p~~~v~gvD~~~~~l~~a~~~~~~~~--------------------l~ni~~i~~d~ 75 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQ-NPDKNFLGIEIHTPIVLAANNKANKLG--------------------LKNLHVLCGDA 75 (194)
T ss_pred CceEEEeCCCccHHHHHHHHh-CCCCCEEEEEeeHHHHHHHHHHHHHhC--------------------CCCEEEEccCH
Confidence 357999999998887777755 2566677777733 3332223333321 24788898888
Q ss_pred CCchhHHHHHHhCCCCCCCcEEEEEecccccCCHHH------HHHHHHHHHhcCCCceEEeeeccCCCCHHHHHHHHHHH
Q 018210 165 RDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDS------SRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIRNLE 238 (359)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~------~~~ll~~la~~f~~~s~i~ye~i~p~d~Fg~~m~~~l~ 238 (359)
.+. +... ++...-..++.-....+..... ...+++.+++...+|..+.+.. ....+...|++.+.
T Consensus 76 ~~~--~~~~-----~~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t--d~~~~~~~~~~~~~ 146 (194)
T TIGR00091 76 NEL--LDKF-----FPDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT--DNEPLFEDMLKVLS 146 (194)
T ss_pred HHH--HHhh-----CCCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe--CCHHHHHHHHHHHH
Confidence 663 2111 2211122222222223322111 1467888888777665554422 22345677788887
Q ss_pred HcC
Q 018210 239 SRG 241 (359)
Q Consensus 239 ~~g 241 (359)
..+
T Consensus 147 ~~~ 149 (194)
T TIGR00091 147 END 149 (194)
T ss_pred hCC
Confidence 665
No 85
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=48.45 E-value=1.8e+02 Score=25.07 Aligned_cols=58 Identities=17% Similarity=0.224 Sum_probs=37.3
Q ss_pred cceEEEeCCCCchhhhhhccCCCCCcEEEEecchhHHHHHHHHHhhcccccccccccccccccCCCccCCCeEEEeccCC
Q 018210 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (359)
Q Consensus 86 ~~QVV~LGAGlDTr~fRL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~lv~~DL~ 165 (359)
...|+-+|||.=.....+... ...+.-+|+|- ..++.-++.+.. ..+.+++..|+.
T Consensus 14 ~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~-~~~~~~~~~~~~----------------------~~~v~ii~~D~~ 69 (169)
T smart00650 14 GDTVLEIGPGKGALTEELLER-AARVTAIEIDP-RLAPRLREKFAA----------------------ADNLTVIHGDAL 69 (169)
T ss_pred cCEEEEECCCccHHHHHHHhc-CCeEEEEECCH-HHHHHHHHHhcc----------------------CCCEEEEECchh
Confidence 358999999987766666655 25677788884 333332322221 246788888887
Q ss_pred Cc
Q 018210 166 DI 167 (359)
Q Consensus 166 ~~ 167 (359)
+.
T Consensus 70 ~~ 71 (169)
T smart00650 70 KF 71 (169)
T ss_pred cC
Confidence 74
No 86
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=45.59 E-value=3.4e+02 Score=27.43 Aligned_cols=150 Identities=11% Similarity=0.091 Sum_probs=79.1
Q ss_pred cchhHHHHHHHHHHHHHHhcCCCCCCcCCCcceEEEeCCCCchhhhhhccCCCCCcEEEEecchhHHHHHHHHHhhcccc
Q 018210 56 RGYFARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGEL 135 (359)
Q Consensus 56 rG~~~R~~~id~~i~~Fl~~~~~~~~~~~~~~QVV~LGAGlDTr~fRL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l 135 (359)
-|.|+-.+..|..+.++.. .+.|+.||||.=.........+...+.-+|++-..+-..|+.+-.+
T Consensus 202 tG~flDqr~~R~~~~~~~~-----------g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~N---- 266 (396)
T PRK15128 202 TGYYLDQRDSRLATRRYVE-----------NKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELN---- 266 (396)
T ss_pred cCcChhhHHHHHHHHHhcC-----------CCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc----
Confidence 4677766666666665521 3579999999877655433332246778888876665555443222
Q ss_pred cccccccccccccCCCccCCCeEEEeccCCCchhHHHHHHhC--CCCCCCcEEEEEecccccCCHH---------HHHHH
Q 018210 136 KDKVGVTASISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLA--NMDPSLPTFIIAECVLIYLDPD---------SSRAI 204 (359)
Q Consensus 136 ~~~~g~~~~~~~~~~~~~s~~y~lv~~DL~~~~~l~~~L~~~--g~d~~~PTl~i~EgvL~YL~~~---------~~~~l 204 (359)
.+..++.+++..|+.+. + ..+... .|| ++++ =-.|+.+. .-..+
T Consensus 267 ---------------gl~~~~v~~i~~D~~~~--l-~~~~~~~~~fD-----lVil--DPP~f~~~k~~l~~~~~~y~~l 321 (396)
T PRK15128 267 ---------------KLDLSKAEFVRDDVFKL--L-RTYRDRGEKFD-----VIVM--DPPKFVENKSQLMGACRGYKDI 321 (396)
T ss_pred ---------------CCCCCcEEEEEccHHHH--H-HHHHhcCCCCC-----EEEE--CCCCCCCChHHHHHHHHHHHHH
Confidence 11124688888888652 2 233221 233 2321 11233222 12333
Q ss_pred HHHHHhcCCC-ceEEeeecc--CCCCHHHHHHHHHHHHcCCCCC
Q 018210 205 VGWASKTFST-AVFFLYEQI--HPDDAFGQQMIRNLESRGCALL 245 (359)
Q Consensus 205 l~~la~~f~~-~s~i~ye~i--~p~d~Fg~~m~~~l~~~g~~l~ 245 (359)
++...+...+ |.++.+..- ...+.|-+++.+.....|..+.
T Consensus 322 ~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~ 365 (396)
T PRK15128 322 NMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQ 365 (396)
T ss_pred HHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEE
Confidence 4444455554 444444322 2235677777666666665544
No 87
>PHA03411 putative methyltransferase; Provisional
Probab=45.56 E-value=13 Score=35.84 Aligned_cols=33 Identities=21% Similarity=0.327 Sum_probs=26.8
Q ss_pred eEEEeCCCCchhhhhhccCC-CCCcEEEEecchh
Q 018210 88 QILSLGAGFDTTYFQLQAEG-KAPHLYVELDFIE 120 (359)
Q Consensus 88 QVV~LGAGlDTr~fRL~~~~-~~~~~~~EvD~p~ 120 (359)
=+.-=|||-||.+||=.|.+ .+-+.+++|||-+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (279)
T PHA03411 207 LVTYAGCGIDTSIYRDEWHSTNVLTEVVEVRYYE 240 (279)
T ss_pred cEecCCCCcccceehhhccCCCccceEEEEEecc
Confidence 46778999999999988876 4557889999843
No 88
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=43.25 E-value=2.5e+02 Score=25.37 Aligned_cols=31 Identities=23% Similarity=0.371 Sum_probs=21.2
Q ss_pred ceEEEeCCCCchhhhhhccCCCCCcEEEEecc
Q 018210 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDF 118 (359)
Q Consensus 87 ~QVV~LGAGlDTr~fRL~~~~~~~~~~~EvD~ 118 (359)
..|+-+|||.=.....+... .++..++=+|.
T Consensus 89 ~~ilDig~G~G~~~~~l~~~-~~~~~v~~iD~ 119 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKE-RPDARVTAVDI 119 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHH-CCCCEEEEEEC
Confidence 47999999998877777654 23445555554
No 89
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=41.57 E-value=2.6e+02 Score=30.48 Aligned_cols=82 Identities=18% Similarity=0.187 Sum_probs=53.7
Q ss_pred ccchhHHHHHHHHHHHHHHhcCCCCCCcCCCcceEEEeCCCCchhhhhhccCCCCCcEEEEecchhHHHHHHHHHhhccc
Q 018210 55 NRGYFARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGE 134 (359)
Q Consensus 55 nrG~~~R~~~id~~i~~Fl~~~~~~~~~~~~~~QVV~LGAGlDTr~fRL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~ 134 (359)
+.|.++-.+-.|..+.++.. .+.|++||||.=.....+...+...+.-+|++-..+-..|+.+-.+.
T Consensus 519 ~tG~flDqr~~R~~~~~~~~-----------g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng-- 585 (702)
T PRK11783 519 DTGLFLDHRPTRRMIGQMAK-----------GKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNG-- 585 (702)
T ss_pred cceECHHHHHHHHHHHHhcC-----------CCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC--
Confidence 45778766566665554431 25799999999888777765533347777877777766666554331
Q ss_pred ccccccccccccccCCCccCCCeEEEeccCCC
Q 018210 135 LKDKVGVTASISQAKGEVLGDNYKLLPVDLRD 166 (359)
Q Consensus 135 l~~~~g~~~~~~~~~~~~~s~~y~lv~~DL~~ 166 (359)
+...+.+++..|..+
T Consensus 586 -----------------~~~~~v~~i~~D~~~ 600 (702)
T PRK11783 586 -----------------LSGRQHRLIQADCLA 600 (702)
T ss_pred -----------------CCccceEEEEccHHH
Confidence 112478888888765
No 90
>PF07283 TrbH: Conjugal transfer protein TrbH; InterPro: IPR010837 This entry represents TrbH, a bacterial conjugal transfer protein approximately 150 residues long. TrbH contains a putative membrane lipoprotein lipid attachment site [].
Probab=41.19 E-value=64 Score=27.15 Aligned_cols=46 Identities=24% Similarity=0.406 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhcCCCce-EEeeeccCCCCHHHHHHHHHHHHcCCCCCC
Q 018210 200 SSRAIVGWASKTFSTAV-FFLYEQIHPDDAFGQQMIRNLESRGCALLG 246 (359)
Q Consensus 200 ~~~~ll~~la~~f~~~s-~i~ye~i~p~d~Fg~~m~~~l~~~g~~l~g 246 (359)
-++.+.+.|++..|++. .+.+-+ ...|+||..+.+.|+.+|-.+..
T Consensus 8 iA~D~v~qL~~~ypPA~Tt~~L~q-~~~d~Fg~aL~~~LR~~GYaV~e 54 (121)
T PF07283_consen 8 IAGDMVSQLAEQYPPAKTTFELKQ-KDPDPFGQALENALRAKGYAVIE 54 (121)
T ss_pred HHHHHHHHHHHhcCCCccEEEEEc-CCCChHHHHHHHHHHhcCcEEEe
Confidence 46677888888898864 233322 34689999999999999876653
No 91
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=40.42 E-value=1.8e+02 Score=28.75 Aligned_cols=60 Identities=13% Similarity=0.102 Sum_probs=41.3
Q ss_pred CCcEEEEEecccccCCHHHHHHHHHHHHhcCCCceEEeeeccCCCCHHHHHHHHHHHHcCCC
Q 018210 182 SLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIRNLESRGCA 243 (359)
Q Consensus 182 ~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~~~s~i~ye~i~p~d~Fg~~m~~~l~~~g~~ 243 (359)
...|+++--|--..|+++...++++.+.+.+++...+..| .+|++ +....++.+++.|+.
T Consensus 56 ~~~tiy~GGGTPs~L~~~~l~~ll~~i~~~~~~~~eitiE-~nP~~-lt~e~l~~lk~~G~n 115 (353)
T PRK05904 56 QFKTIYLGGGTPNCLNDQLLDILLSTIKPYVDNNCEFTIE-CNPEL-ITQSQINLLKKNKVN 115 (353)
T ss_pred CeEEEEECCCccccCCHHHHHHHHHHHHHhcCCCCeEEEE-eccCc-CCHHHHHHHHHcCCC
Confidence 3568888888888899999999999998888766566666 35532 223344555555554
No 92
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=39.98 E-value=3e+02 Score=25.34 Aligned_cols=110 Identities=13% Similarity=0.141 Sum_probs=60.8
Q ss_pred cceEEEeCC--CCchhhhhhccCCCCCcEEEEecchhHHHHHHHHHhhcccccccccccccccccCCCccCCCeEEEecc
Q 018210 86 KKQILSLGA--GFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVD 163 (359)
Q Consensus 86 ~~QVV~LGA--GlDTr~fRL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~lv~~D 163 (359)
.+.|+.+|+ |+.+..+-...+....+.-+|+|-. .++.=++.+++.+ + .++.+++-.|
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~-~~~~A~~n~~~~g------------------l-~~~i~~~~gd 128 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKE-AYEVGLEFIKKAG------------------V-DHKINFIQSD 128 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHH-HHHHHHHHHHHcC------------------C-CCcEEEEEcc
Confidence 468999995 5655543322221245777788854 4444444455431 1 3568888888
Q ss_pred CCCchhHHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHhcCCCceEEeeeccC
Q 018210 164 LRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIH 224 (359)
Q Consensus 164 L~~~~~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~~~s~i~ye~i~ 224 (359)
..+. + ..|...+-+ ...-++...+ ..+.-..++..+.....+|..+++|.+.
T Consensus 129 a~~~--L-~~l~~~~~~-~~fD~VfiDa-----~k~~y~~~~~~~~~ll~~GG~ii~dn~l 180 (234)
T PLN02781 129 ALSA--L-DQLLNNDPK-PEFDFAFVDA-----DKPNYVHFHEQLLKLVKVGGIIAFDNTL 180 (234)
T ss_pred HHHH--H-HHHHhCCCC-CCCCEEEECC-----CHHHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 7652 3 333221111 1122333332 2345557778888888888888888764
No 93
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=39.77 E-value=2.6e+02 Score=24.46 Aligned_cols=107 Identities=14% Similarity=0.145 Sum_probs=55.3
Q ss_pred cceEEEeCCCCchhhhhhccCCCCCcEEEEecchhHHHHHHHHHhhcccccccccccccccccCCCccCCCeEEEeccCC
Q 018210 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (359)
Q Consensus 86 ~~QVV~LGAGlDTr~fRL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~lv~~DL~ 165 (359)
..+|+-+|||.=....-+.....+..+++=+|.-+.. . ..+..++..|+.
T Consensus 33 g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~----------------------~~~i~~~~~d~~ 82 (188)
T TIGR00438 33 GDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------P----------------------IENVDFIRGDFT 82 (188)
T ss_pred CCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------c----------------------CCCceEEEeeCC
Confidence 4689999999876544333221123345555554321 1 123566777887
Q ss_pred CchhHHHHHHhCCCCCCCcEEEEEeccccc-----CCH----HHHHHHHHHHHhcCCCceEEeeeccC
Q 018210 166 DIQMLNEVINLANMDPSLPTFIIAECVLIY-----LDP----DSSRAIVGWASKTFSTAVFFLYEQIH 224 (359)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~EgvL~Y-----L~~----~~~~~ll~~la~~f~~~s~i~ye~i~ 224 (359)
+.+... .+.. .+..+..-++++.+...+ +.. +....+++.+.+...++..++.+...
T Consensus 83 ~~~~~~-~l~~-~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~ 148 (188)
T TIGR00438 83 DEEVLN-KIRE-RVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ 148 (188)
T ss_pred ChhHHH-HHHH-HhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc
Confidence 753222 2322 122334557776654221 111 22467778877776665555554333
No 94
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=36.69 E-value=2.1e+02 Score=29.15 Aligned_cols=61 Identities=13% Similarity=0.210 Sum_probs=46.7
Q ss_pred CCCcEEEEEecccccCCHHHHHHHHHHHHhcCC---CceEEeeeccCCCCHHHHHHHHHHHHcCCC
Q 018210 181 PSLPTFIIAECVLIYLDPDSSRAIVGWASKTFS---TAVFFLYEQIHPDDAFGQQMIRNLESRGCA 243 (359)
Q Consensus 181 ~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~---~~s~i~ye~i~p~d~Fg~~m~~~l~~~g~~ 243 (359)
...-|+++==|--.+|++++...+++.+.+.|+ +...+..|. +|.+ +...+.+.++..|..
T Consensus 86 ~~v~ti~~GGGTPslL~~~~l~~ll~~l~~~~~~~~~~~EitiE~-nP~~-~~~e~~~~l~~~GvN 149 (416)
T COG0635 86 REVKTIYFGGGTPSLLSPEQLERLLKALRELFNDLDPDAEITIEA-NPGT-VEAEKFKALKEAGVN 149 (416)
T ss_pred CeEEEEEECCCccccCCHHHHHHHHHHHHHhcccCCCCceEEEEe-CCCC-CCHHHHHHHHHcCCC
Confidence 357799999999999999999999999999993 336788886 7752 344556666666554
No 95
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=36.56 E-value=3.4e+02 Score=24.84 Aligned_cols=111 Identities=12% Similarity=0.100 Sum_probs=69.9
Q ss_pred ceEEEeCCCCchhhhhhccCCCCCcEEEEecchhHHHHHHHHHhhcccccccccccccccccCCCccCCCeEEEeccCCC
Q 018210 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRD 166 (359)
Q Consensus 87 ~QVV~LGAGlDTr~fRL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~lv~~DL~~ 166 (359)
..|+.+|||.-.-+-.|... +..++=||+-++--.|.. .+.. +....... .......+.+.++.-+|+.+
T Consensus 39 ~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~--~~~~-l~~~~~~~----~~~~~~~~~~v~~~~~D~~~ 108 (218)
T PRK13255 39 SRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFF--AENG-LTPQTRQS----GEFEHYQAGEITIYCGDFFA 108 (218)
T ss_pred CeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHH--HHcC-CCcccccc----ccccccccCceEEEECcccC
Confidence 57999999997777778765 678888888666444432 2211 10000000 00001124567888888887
Q ss_pred chhHHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHhcCCCce
Q 018210 167 IQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAV 216 (359)
Q Consensus 167 ~~~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~~~s 216 (359)
... -+...-.+++-.++++-++++.=.+.++.+.+...++.
T Consensus 109 l~~---------~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG 149 (218)
T PRK13255 109 LTA---------ADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGC 149 (218)
T ss_pred CCc---------ccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCC
Confidence 520 01113368888889999999999999999999887663
No 96
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=34.96 E-value=2.6e+02 Score=28.11 Aligned_cols=87 Identities=16% Similarity=0.221 Sum_probs=58.1
Q ss_pred CCCcEEEEEecccccCCHHHHHHHHHHHHhcCCC--ceEEeeeccCCCCHHHHHHHHHHHHcCCCCC--CCC--------
Q 018210 181 PSLPTFIIAECVLIYLDPDSSRAIVGWASKTFST--AVFFLYEQIHPDDAFGQQMIRNLESRGCALL--GIN-------- 248 (359)
Q Consensus 181 ~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~~--~s~i~ye~i~p~d~Fg~~m~~~l~~~g~~l~--gi~-------- 248 (359)
...-|+++--|--..|+++...++++.+.+.|+- ...+..| .+|++ +...+++.+++.|+.-. |+.
T Consensus 65 ~~i~~iy~GGGTps~l~~~~l~~ll~~i~~~~~~~~~~eit~E-~~P~~-lt~e~l~~l~~~GvnrislGvQS~~d~~L~ 142 (400)
T PRK07379 65 QPLQTVFFGGGTPSLLSVEQLERILTTLDQRFGIAPDAEISLE-IDPGT-FDLEQLQGYRSLGVNRVSLGVQAFQDELLA 142 (400)
T ss_pred CceeEEEECCCccccCCHHHHHHHHHHHHHhCCCCCCCEEEEE-eCCCc-CCHHHHHHHHHCCCCEEEEEcccCCHHHHH
Confidence 3466899999999999999999999999988753 2456666 46643 34456667777776533 222
Q ss_pred ---CCCChhH---HHHHHHhCCCceee
Q 018210 249 ---ATPTLLA---KEKLFLDQGWQQAV 269 (359)
Q Consensus 249 ---~y~t~~~---~~~r~~~~Gw~~~~ 269 (359)
.-.|.++ ..+.++++||+++.
T Consensus 143 ~l~R~~~~~~~~~ai~~l~~~G~~~v~ 169 (400)
T PRK07379 143 LCGRSHRVKDIFAAVDLIHQAGIENFS 169 (400)
T ss_pred HhCCCCCHHHHHHHHHHHHHcCCCeEE
Confidence 2234433 44566778887543
No 97
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=34.91 E-value=3.4e+02 Score=24.47 Aligned_cols=102 Identities=11% Similarity=0.092 Sum_probs=57.6
Q ss_pred ceEEEeCCCCchhhhhhccCCCCCcEEEEecchhHHHHHHHHHhhcccccccccccccccccCCCccCCCeEEEeccCCC
Q 018210 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRD 166 (359)
Q Consensus 87 ~QVV~LGAGlDTr~fRL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~lv~~DL~~ 166 (359)
..|+-||||.=.....+.....+...++-||.-++ .. ..+.+++-+|+.+
T Consensus 53 ~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~--------~~----------------------~~~v~~i~~D~~~ 102 (209)
T PRK11188 53 MTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM--------DP----------------------IVGVDFLQGDFRD 102 (209)
T ss_pred CEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc--------cC----------------------CCCcEEEecCCCC
Confidence 47999999987655444433113456777777551 11 1347788999998
Q ss_pred chhHHHHHHhCCCCCCCcEEEEEecccccCCHHH---------HHHHHHHHHhcCCCceEEee
Q 018210 167 IQMLNEVINLANMDPSLPTFIIAECVLIYLDPDS---------SRAIVGWASKTFSTAVFFLY 220 (359)
Q Consensus 167 ~~~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~---------~~~ll~~la~~f~~~s~i~y 220 (359)
.+.+...+.. +.....-++++.....+..... ...+++.+.+...+|..++.
T Consensus 103 ~~~~~~i~~~--~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi 163 (209)
T PRK11188 103 ELVLKALLER--VGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVV 163 (209)
T ss_pred hHHHHHHHHH--hCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 6434433332 2233445777776655543221 23566777666655444343
No 98
>PRK13883 conjugal transfer protein TrbH; Provisional
Probab=34.09 E-value=1e+02 Score=26.98 Aligned_cols=45 Identities=31% Similarity=0.459 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhcCCCce-EEeeeccCCCCHHHHHHHHHHHHcCCCCC
Q 018210 200 SSRAIVGWASKTFSTAV-FFLYEQIHPDDAFGQQMIRNLESRGCALL 245 (359)
Q Consensus 200 ~~~~ll~~la~~f~~~s-~i~ye~i~p~d~Fg~~m~~~l~~~g~~l~ 245 (359)
-+..+.+.|++..|++. .+.+.+ ...|+||..+.+.|+..|-.+.
T Consensus 36 iA~D~v~qL~~~ypPA~Tt~~l~q-~~~D~Fg~aL~~aLR~~GYaV~ 81 (151)
T PRK13883 36 LATDAVQQLATLYPPAQTRFELQQ-PTPDAFGQALVKALRDKGYALL 81 (151)
T ss_pred HHHHHHHHHHHhCCCcceEEEEec-CCCcHHHHHHHHHHHHcCeEEE
Confidence 35667788888888764 344544 2357999999999999887665
No 99
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=32.75 E-value=53 Score=29.81 Aligned_cols=57 Identities=16% Similarity=0.278 Sum_probs=38.0
Q ss_pred CCCeEEEeccCCCchhHHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHhcCCCceEEee
Q 018210 154 GDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLY 220 (359)
Q Consensus 154 s~~y~lv~~DL~~~~~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~~~s~i~y 220 (359)
.++..+-..||.+.... ...=-++++=-||+|++++.-.++++.+.+...+|.+++.
T Consensus 117 r~~V~F~~~NL~~~~~~----------~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~l 173 (196)
T PF01739_consen 117 RKMVRFRRHNLLDPDPP----------FGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFL 173 (196)
T ss_dssp HTTEEEEE--TT-S----------------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred cCceEEEecccCCCCcc----------cCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 45677777777772111 1122499999999999999999999999998888777664
No 100
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=31.79 E-value=45 Score=25.70 Aligned_cols=31 Identities=16% Similarity=0.213 Sum_probs=19.6
Q ss_pred EEEEEecccccCCHHHHHHHHHHHHhcCCCceE
Q 018210 185 TFIIAECVLIYLDPDSSRAIVGWASKTFSTAVF 217 (359)
Q Consensus 185 Tl~i~EgvL~YL~~~~~~~ll~~la~~f~~~s~ 217 (359)
-++++=.|+.|+ +...++++.+.+...+|..
T Consensus 68 D~V~~~~vl~~l--~~~~~~l~~~~~~L~pgG~ 98 (99)
T PF08242_consen 68 DLVVASNVLHHL--EDIEAVLRNIYRLLKPGGI 98 (99)
T ss_dssp SEEEEE-TTS----S-HHHHHHHHTTT-TSS-E
T ss_pred ceehhhhhHhhh--hhHHHHHHHHHHHcCCCCC
Confidence 377777999999 6666999999887766543
No 101
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=31.33 E-value=3.6e+02 Score=23.64 Aligned_cols=141 Identities=12% Similarity=0.017 Sum_probs=73.1
Q ss_pred ceEEEeCCCCchhhhhhccCCCCCcEEEEecchhHHHHHHHHHhhcccccccccccccccccCCCccCCCeEEEeccCCC
Q 018210 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRD 166 (359)
Q Consensus 87 ~QVV~LGAGlDTr~fRL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~lv~~DL~~ 166 (359)
..|+-+|||.-...-.+... .+...+-+|.-+-.-.+.+ . .+..++..|+.+
T Consensus 15 ~~iLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~i~~a~---~-----------------------~~~~~~~~d~~~ 66 (194)
T TIGR02081 15 SRVLDLGCGDGELLALLRDE--KQVRGYGIEIDQDGVLACV---A-----------------------RGVNVIQGDLDE 66 (194)
T ss_pred CEEEEeCCCCCHHHHHHHhc--cCCcEEEEeCCHHHHHHHH---H-----------------------cCCeEEEEEhhh
Confidence 57999999998776666433 2344556665332222211 1 124456666654
Q ss_pred chhHHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHhcCCCceEEeeeccCCCCHHHHHHHHHHHHcCC----
Q 018210 167 IQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIRNLESRGC---- 242 (359)
Q Consensus 167 ~~~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~~~s~i~ye~i~p~d~Fg~~m~~~l~~~g~---- 242 (359)
. +. .+..+.--++++-.++.+++. ...+++.+.+.... ++... |+-.+...-..-+.....
T Consensus 67 ~--l~------~~~~~sfD~Vi~~~~l~~~~d--~~~~l~e~~r~~~~---~ii~~--p~~~~~~~~~~~~~~~~~~~~~ 131 (194)
T TIGR02081 67 G--LE------AFPDKSFDYVILSQTLQATRN--PEEILDEMLRVGRH---AIVSF--PNFGYWRVRWSILTKGRMPVTG 131 (194)
T ss_pred c--cc------ccCCCCcCEEEEhhHhHcCcC--HHHHHHHHHHhCCe---EEEEc--CChhHHHHHHHHHhCCccccCC
Confidence 1 10 122223347777788888854 44566666654322 22221 332222110111111111
Q ss_pred ----CCC--CCCCCCChhHHHHHHHhCCCceeee
Q 018210 243 ----ALL--GINATPTLLAKEKLFLDQGWQQAVA 270 (359)
Q Consensus 243 ----~l~--gi~~y~t~~~~~~r~~~~Gw~~~~~ 270 (359)
++. ....+.+.++..+.+.++||+.+..
T Consensus 132 ~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~v~~~ 165 (194)
T TIGR02081 132 ELPYDWYNTPNIHFCTIADFEDLCGELNLRILDR 165 (194)
T ss_pred CCCccccCCCCcccCcHHHHHHHHHHCCCEEEEE
Confidence 111 1135789999999999999998774
No 102
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=30.28 E-value=47 Score=32.07 Aligned_cols=35 Identities=17% Similarity=0.266 Sum_probs=31.3
Q ss_pred EEEEecccccCCHHHHHHHHHHHHhcCCCceEEee
Q 018210 186 FIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLY 220 (359)
Q Consensus 186 l~i~EgvL~YL~~~~~~~ll~~la~~f~~~s~i~y 220 (359)
++++..|++|++++.-.++++.+.+...+|.+++.
T Consensus 226 ~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~l 260 (287)
T PRK10611 226 AIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFA 260 (287)
T ss_pred eeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 88999999999999999999999998887776654
No 103
>PF14965 BRI3BP: Negative regulator of p53/TP53
Probab=30.06 E-value=68 Score=28.74 Aligned_cols=33 Identities=18% Similarity=0.499 Sum_probs=28.8
Q ss_pred HHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHh
Q 018210 170 LNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASK 210 (359)
Q Consensus 170 l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~ 210 (359)
|.+.|+..|+|.+.+|= |++|+++..++.|..-
T Consensus 50 ~~dlL~~~Gid~~~lt~--------~~SP~~V~~~llw~~~ 82 (177)
T PF14965_consen 50 WTDLLDVLGIDGSNLTH--------YFSPGGVQTVLLWGAV 82 (177)
T ss_pred HHHHHHHhCcccccccc--------ccCHHHHHHHHHHHHH
Confidence 67788889999998875 9999999999999765
No 104
>PLN02823 spermine synthase
Probab=29.52 E-value=4.2e+02 Score=26.13 Aligned_cols=122 Identities=12% Similarity=0.147 Sum_probs=63.9
Q ss_pred cceEEEeCCCCchhhhhhcc-CCCCCcEEEEecchhHHHHHHHHHhhc------ccccccccccccccccCCCccCCCeE
Q 018210 86 KKQILSLGAGFDTTYFQLQA-EGKAPHLYVELDFIEVTSKKAALIETH------GELKDKVGVTASISQAKGEVLGDNYK 158 (359)
Q Consensus 86 ~~QVV~LGAGlDTr~fRL~~-~~~~~~~~~EvD~p~vi~~K~~~i~~~------~~l~~~~g~~~~~~~~~~~~~s~~y~ 158 (359)
++.|+.+|+|-=..+..+.. .....+..+|+|-. +++.=++.+... |.++=.+++.-... .-..++|.
T Consensus 104 pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~-vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L----~~~~~~yD 178 (336)
T PLN02823 104 PKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQE-VVDFCRKHLTVNREAFCDKRLELIINDARAEL----EKRDEKFD 178 (336)
T ss_pred CCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHH-HHHHHHHhcccccccccCCceEEEEChhHHHH----hhCCCCcc
Confidence 46789999987666554433 22246889999975 555444444321 11111111100000 01246789
Q ss_pred EEeccCCCch-----------hHHH-HHHhCCCCCCCcEEEEEecccc--cCCHHHHHHHHHHHHhcCCCc
Q 018210 159 LLPVDLRDIQ-----------MLNE-VINLANMDPSLPTFIIAECVLI--YLDPDSSRAIVGWASKTFSTA 215 (359)
Q Consensus 159 lv~~DL~~~~-----------~l~~-~L~~~g~d~~~PTl~i~EgvL~--YL~~~~~~~ll~~la~~f~~~ 215 (359)
+|-+|+.|+. ++.+ .+.. -+.++- +++.++... ...++....+++.+.+.|+..
T Consensus 179 vIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~-~L~p~G--vlv~q~~s~~~~~~~~~~~~i~~tl~~vF~~v 246 (336)
T PLN02823 179 VIIGDLADPVEGGPCYQLYTKSFYERIVKP-KLNPGG--IFVTQAGPAGILTHKEVFSSIYNTLRQVFKYV 246 (336)
T ss_pred EEEecCCCccccCcchhhccHHHHHHHHHH-hcCCCc--EEEEeccCcchhccHHHHHHHHHHHHHhCCCE
Confidence 9999987631 1222 2221 133222 445554332 234677888888888888763
No 105
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=28.15 E-value=1.3e+02 Score=27.43 Aligned_cols=118 Identities=22% Similarity=0.242 Sum_probs=75.5
Q ss_pred ceEEEeCCCCchhhhhhccCCCCCcEEEEecchhHHHHHHHHHhhcccccccccccccccccCCCccCCCeEEEeccCCC
Q 018210 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRD 166 (359)
Q Consensus 87 ~QVV~LGAGlDTr~fRL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~lv~~DL~~ 166 (359)
+-|+-||||.=-.++=....+...+..+|+|-..+-..|+..-+- ..+..++.+|+++
T Consensus 47 ~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l----------------------~g~v~f~~~dv~~ 104 (198)
T COG2263 47 KTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEEL----------------------LGDVEFVVADVSD 104 (198)
T ss_pred CEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhh----------------------CCceEEEEcchhh
Confidence 579999999998887766555467899999998887777655431 3568899999988
Q ss_pred chhHHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHhcCCC-ceEEeeeccCCCC-HHHHHHHHHHHHcCCCC
Q 018210 167 IQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFST-AVFFLYEQIHPDD-AFGQQMIRNLESRGCAL 244 (359)
Q Consensus 167 ~~~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~~-~s~i~ye~i~p~d-~Fg~~m~~~l~~~g~~l 244 (359)
... .+| |.+ |. |+ |+. +.-.| +| +.+.|+ .+--.
T Consensus 105 ~~~--------~~d----tvi--------mN---------------PPFG~~-----~rhaDr~F---l~~Ale-~s~vV 140 (198)
T COG2263 105 FRG--------KFD----TVI--------MN---------------PPFGSQ-----RRHADRPF---LLKALE-ISDVV 140 (198)
T ss_pred cCC--------ccc----eEE--------EC---------------CCCccc-----cccCCHHH---HHHHHH-hhheE
Confidence 521 233 111 00 21 222 11111 22 223332 23334
Q ss_pred CCCCCCCChhHHHHHHHhCCCceeee
Q 018210 245 LGINATPTLLAKEKLFLDQGWQQAVA 270 (359)
Q Consensus 245 ~gi~~y~t~~~~~~r~~~~Gw~~~~~ 270 (359)
.+++...+.+-...++..+|++....
T Consensus 141 YsiH~a~~~~f~~~~~~~~G~~v~~~ 166 (198)
T COG2263 141 YSIHKAGSRDFVEKFAADLGGTVTHI 166 (198)
T ss_pred EEeeccccHHHHHHHHHhcCCeEEEE
Confidence 58888888888889999999987654
No 106
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=27.62 E-value=3.2e+02 Score=23.58 Aligned_cols=44 Identities=18% Similarity=0.208 Sum_probs=32.2
Q ss_pred cceEEEeCCCCchhhhhhccCCCCC--cEEEEecchhHHHHHHHHHh
Q 018210 86 KKQILSLGAGFDTTYFQLQAEGKAP--HLYVELDFIEVTSKKAALIE 130 (359)
Q Consensus 86 ~~QVV~LGAGlDTr~fRL~~~~~~~--~~~~EvD~p~vi~~K~~~i~ 130 (359)
...|+-||||.=.....+.... +. +..+|++...+-..|+.+-.
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~~n~~~ 77 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAKRNAER 77 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHHHHHHH
T ss_pred CCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHHh
Confidence 4689999999998888877653 44 78888887666555555443
No 107
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=26.93 E-value=4.7e+02 Score=26.73 Aligned_cols=85 Identities=15% Similarity=0.227 Sum_probs=55.9
Q ss_pred CCcEEEEEecccccCCHHHHHHHHHHHHhcCCC--ceEEeeeccCCCCHHHHHHHHHHHHcCCCCC--CCCCC-------
Q 018210 182 SLPTFIIAECVLIYLDPDSSRAIVGWASKTFST--AVFFLYEQIHPDDAFGQQMIRNLESRGCALL--GINAT------- 250 (359)
Q Consensus 182 ~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~~--~s~i~ye~i~p~d~Fg~~m~~~l~~~g~~l~--gi~~y------- 250 (359)
...++++--|.-..|+++...+|++.+.+.|+- ...+..| .+|. .+...+++.|++.|+... |+..+
T Consensus 103 ~v~~i~fgGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~tie-~~p~-~lt~e~l~~L~~~G~~rvsiGvQS~~~~vl~~ 180 (453)
T PRK13347 103 RVSQLHWGGGTPTILNPDQFERLMAALRDAFDFAPEAEIAVE-IDPR-TVTAEMLQALAALGFNRASFGVQDFDPQVQKA 180 (453)
T ss_pred eEEEEEEcCcccccCCHHHHHHHHHHHHHhCCCCCCceEEEE-eccc-cCCHHHHHHHHHcCCCEEEECCCCCCHHHHHH
Confidence 466888889999999999999999999987752 3344555 3443 234566777777776533 33322
Q ss_pred ----CCh---hHHHHHHHhCCCcee
Q 018210 251 ----PTL---LAKEKLFLDQGWQQA 268 (359)
Q Consensus 251 ----~t~---~~~~~r~~~~Gw~~~ 268 (359)
.+. ....+.++++||..+
T Consensus 181 l~R~~~~~~~~~ai~~lr~~G~~~v 205 (453)
T PRK13347 181 INRIQPEEMVARAVELLRAAGFESI 205 (453)
T ss_pred hCCCCCHHHHHHHHHHHHhcCCCcE
Confidence 222 335566678899743
No 108
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=25.82 E-value=3.1e+02 Score=27.52 Aligned_cols=77 Identities=23% Similarity=0.317 Sum_probs=55.3
Q ss_pred cceEEEeCCCCchhhhhhccCCCCCcEEEEecchhHHHHHHHHHhhcccccccccccccccccCCCccCCCeEEEeccCC
Q 018210 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (359)
Q Consensus 86 ~~QVV~LGAGlDTr~fRL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~lv~~DL~ 165 (359)
.+-||-.|||.--+.|--... ..-++|-|.-.++.+.-+++++.+ ...++...|+.-+.
T Consensus 178 ~kiVlDVGaGSGILS~FAaqA--GA~~vYAvEAS~MAqyA~~Lv~~N-------------------~~~~rItVI~GKiE 236 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQA--GAKKVYAVEASEMAQYARKLVASN-------------------NLADRITVIPGKIE 236 (517)
T ss_pred CcEEEEecCCccHHHHHHHHh--CcceEEEEehhHHHHHHHHHHhcC-------------------CccceEEEccCccc
Confidence 468999999998885444333 246789999999999999888875 12678889998887
Q ss_pred CchhHHHHHHhCCCCCCCcEEEEEecccc
Q 018210 166 DIQMLNEVINLANMDPSLPTFIIAECVLI 194 (359)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~EgvL~ 194 (359)
+. ++ |.+--++|+|-.=+
T Consensus 237 di-eL----------PEk~DviISEPMG~ 254 (517)
T KOG1500|consen 237 DI-EL----------PEKVDVIISEPMGY 254 (517)
T ss_pred cc-cC----------chhccEEEeccchh
Confidence 76 23 23444788886533
No 109
>COG3580 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.60 E-value=83 Score=30.88 Aligned_cols=46 Identities=17% Similarity=0.206 Sum_probs=30.8
Q ss_pred HHHHHhcCCCCCCcCCCcceEEEeCCCCchhhhhhc----cCCCCCc-EEEEecchh
Q 018210 69 LYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQ----AEGKAPH-LYVELDFIE 120 (359)
Q Consensus 69 i~~Fl~~~~~~~~~~~~~~QVV~LGAGlDTr~fRL~----~~~~~~~-~~~EvD~p~ 120 (359)
..+|..++++-. -.|++|.|||.|.--.-+- .. .+.+ ++.++|--.
T Consensus 264 AA~fvak~~nle-----gV~l~SFgCG~Davttd~i~eIl~~-~nk~ytvlkIDE~t 314 (351)
T COG3580 264 AAKFVAKHPNLE-----GVQLVSFGCGLDAVTTDLIEEILEG-HNKIYTVLKIDEGT 314 (351)
T ss_pred HHHHHhcCCCee-----eEEEeecccCcchhHHHHHHHHHHh-CCCeeEEEEecCCC
Confidence 348888887532 4799999999998754431 22 1334 788888643
No 110
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=25.53 E-value=5.7e+02 Score=24.02 Aligned_cols=110 Identities=12% Similarity=0.120 Sum_probs=63.3
Q ss_pred cceEEEeC--CCCchhhhhhccCCCCCcEEEEecchhHHHHHHHHHhhcccccccccccccccccCCCccCCCeEEEecc
Q 018210 86 KKQILSLG--AGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVD 163 (359)
Q Consensus 86 ~~QVV~LG--AGlDTr~fRL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~lv~~D 163 (359)
.+.|+-+| +|+-|..+-...+....+.-+|.| |+..+.-++.+++.+ + .++.+++..|
T Consensus 80 ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~-~~~~~~Ar~~~~~ag------------------~-~~~I~~~~G~ 139 (247)
T PLN02589 80 AKNTMEIGVYTGYSLLATALALPEDGKILAMDIN-RENYELGLPVIQKAG------------------V-AHKIDFREGP 139 (247)
T ss_pred CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCC-HHHHHHHHHHHHHCC------------------C-CCceEEEecc
Confidence 56899998 677676554333212357777777 566777777777642 1 4677778777
Q ss_pred CCCchhHHHHHHhCCC-CCCCcEEEEEecccccCCHHHHHHHHHHHHhcCCCceEEeeeccC
Q 018210 164 LRDIQMLNEVINLANM-DPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIH 224 (359)
Q Consensus 164 L~~~~~l~~~L~~~g~-d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~~~s~i~ye~i~ 224 (359)
..+ .+. .|...|- +.. .-.++.=-....-...++.+-.+..+|..|++|.+.
T Consensus 140 a~e--~L~-~l~~~~~~~~~------fD~iFiDadK~~Y~~y~~~~l~ll~~GGviv~DNvl 192 (247)
T PLN02589 140 ALP--VLD-QMIEDGKYHGT------FDFIFVDADKDNYINYHKRLIDLVKVGGVIGYDNTL 192 (247)
T ss_pred HHH--HHH-HHHhccccCCc------ccEEEecCCHHHhHHHHHHHHHhcCCCeEEEEcCCC
Confidence 654 233 3332110 011 111222222444556666767778888899999775
No 111
>PRK05660 HemN family oxidoreductase; Provisional
Probab=24.69 E-value=3.2e+02 Score=27.20 Aligned_cols=86 Identities=9% Similarity=0.107 Sum_probs=57.3
Q ss_pred CCCcEEEEEecccccCCHHHHHHHHHHHHhcCCC--ceEEeeeccCCCCHHHHHHHHHHHHcCCCCC--CCCCC------
Q 018210 181 PSLPTFIIAECVLIYLDPDSSRAIVGWASKTFST--AVFFLYEQIHPDDAFGQQMIRNLESRGCALL--GINAT------ 250 (359)
Q Consensus 181 ~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~~--~s~i~ye~i~p~d~Fg~~m~~~l~~~g~~l~--gi~~y------ 250 (359)
....|+++--|--..|+++...++++.+.+.|+- +..+..|. +|.+ .....++.+++.|+.-. |++.+
T Consensus 57 ~~v~ti~~GGGtPs~l~~~~l~~ll~~l~~~~~~~~~~eit~e~-np~~-l~~e~l~~Lk~~Gv~risiGvqS~~~~~L~ 134 (378)
T PRK05660 57 REVHSIFIGGGTPSLFSAEAIQRLLDGVRARLPFAPDAEITMEA-NPGT-VEADRFVGYQRAGVNRISIGVQSFSEEKLK 134 (378)
T ss_pred CceeEEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCcEEEEEe-CcCc-CCHHHHHHHHHcCCCEEEeccCcCCHHHHH
Confidence 4577999999999999999999999999998863 34566664 4542 33455666666665422 33222
Q ss_pred -----CChh---HHHHHHHhCCCcee
Q 018210 251 -----PTLL---AKEKLFLDQGWQQA 268 (359)
Q Consensus 251 -----~t~~---~~~~r~~~~Gw~~~ 268 (359)
.+.+ +..+++++.||..+
T Consensus 135 ~l~r~~~~~~~~~ai~~~~~~G~~~v 160 (378)
T PRK05660 135 RLGRIHGPDEAKRAAKLAQGLGLRSF 160 (378)
T ss_pred HhCCCCCHHHHHHHHHHHHHcCCCeE
Confidence 1232 34566778899754
No 112
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=24.57 E-value=3.5e+02 Score=26.52 Aligned_cols=60 Identities=12% Similarity=0.140 Sum_probs=37.9
Q ss_pred CCcEEEEEecccccCCHHHHHHHHHHHHhcCCCceEEeeeccCCCCHHHHHHHHHHHHcCCC
Q 018210 182 SLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIRNLESRGCA 243 (359)
Q Consensus 182 ~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~~~s~i~ye~i~p~d~Fg~~m~~~l~~~g~~ 243 (359)
...|+++--|--..|+++...++++.+.+.++.+..+..|. +|.+ +....++.+++.|+.
T Consensus 51 ~v~~iyfGGGTPs~l~~~~l~~ll~~i~~~~~~~~eitiE~-nP~~-~~~e~l~~l~~~Gvn 110 (350)
T PRK08446 51 KIESVFIGGGTPSTVSAKFYEPIFEIISPYLSKDCEITTEA-NPNS-ATKAWLKGMKNLGVN 110 (350)
T ss_pred ceeEEEECCCccccCCHHHHHHHHHHHHHhcCCCceEEEEe-CCCC-CCHHHHHHHHHcCCC
Confidence 45678877888888888888888888877655554555553 4432 223344555555544
No 113
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=24.36 E-value=3e+02 Score=26.22 Aligned_cols=114 Identities=11% Similarity=0.160 Sum_probs=64.1
Q ss_pred eEEEeccCCCchhHHHHHHh-CCCCCCCcEEEEEecccccC----CHHHHHHHHHHHHhcCC---CceE-EeeeccCCCC
Q 018210 157 YKLLPVDLRDIQMLNEVINL-ANMDPSLPTFIIAECVLIYL----DPDSSRAIVGWASKTFS---TAVF-FLYEQIHPDD 227 (359)
Q Consensus 157 y~lv~~DL~~~~~l~~~L~~-~g~d~~~PTl~i~EgvL~YL----~~~~~~~ll~~la~~f~---~~s~-i~ye~i~p~d 227 (359)
....|.-+-.-.+....+.. ..+...-..+.+..=+|.++ .++...++++.+.+.++ ++.. +..=.-++..
T Consensus 75 V~VQplhiipG~Ey~~l~~~v~~~~~~F~~i~~g~PLL~~~g~~~~~~D~~~va~aL~~~~~~~~~~~a~vlmGHGt~h~ 154 (262)
T PF06180_consen 75 VVVQPLHIIPGEEYEKLRATVEAYKHDFKKIVLGRPLLYTMGQENSPEDYEAVAEALAEEFPKKRKDEAVVLMGHGTPHP 154 (262)
T ss_dssp EEEEE--SCSSHHHHHHHHHHHHHCCCSSEEEEE--SCSS-----SHHHHHHHHHHHHCCS-TT-TTEEEEEEE---SCH
T ss_pred EEEeecceeCcHhHHHHHHHHHHhhccCCeEEecccccccccccCChHHHHHHHHHHHHhccccCCCCEEEEEeCCCCCC
Confidence 44445555443444433221 12344456788888665542 57788889999988877 4433 3333333332
Q ss_pred HHH--HHHHHHHHHcCCC---CCCCCCCCChhHHHHHHHhCCCceeee
Q 018210 228 AFG--QQMIRNLESRGCA---LLGINATPTLLAKEKLFLDQGWQQAVA 270 (359)
Q Consensus 228 ~Fg--~~m~~~l~~~g~~---l~gi~~y~t~~~~~~r~~~~Gw~~~~~ 270 (359)
+.+ ..+...|.+.|-+ +-+++.||++++..+++++.|.+.+..
T Consensus 155 an~~Y~~l~~~l~~~~~~~v~vgtvEG~P~~~~vi~~L~~~g~k~V~L 202 (262)
T PF06180_consen 155 ANAAYSALQAMLKKHGYPNVFVGTVEGYPSLEDVIARLKKKGIKKVHL 202 (262)
T ss_dssp HHHHHHHHHHHHHCCT-TTEEEEETTSSSBHHHHHHHHHHHT-SEEEE
T ss_pred ccHHHHHHHHHHHhCCCCeEEEEEeCCCCCHHHHHHHHHhcCCCeEEE
Confidence 222 3455667777633 337888999999999999999988763
No 114
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=23.02 E-value=7e+02 Score=24.15 Aligned_cols=153 Identities=12% Similarity=0.103 Sum_probs=77.4
Q ss_pred cceEEEeCCCCchhhhhhccCC-------CCCcEEEEecchhHHHHHHHHHhhcccccccccccccccccCCCccCCCeE
Q 018210 86 KKQILSLGAGFDTTYFQLQAEG-------KAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYK 158 (359)
Q Consensus 86 ~~QVV~LGAGlDTr~fRL~~~~-------~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~~~s~~y~ 158 (359)
..+++-++||.=-.+||+...- ..++.+.|+..+-+-.-|++..+. + | ..+.++.
T Consensus 101 ~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~-~-l----------------~~~~~~~ 162 (296)
T KOG1540|consen 101 GMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKR-P-L----------------KASSRVE 162 (296)
T ss_pred CCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhc-C-C----------------CcCCceE
Confidence 3699999999999999986431 135666666665554455554432 1 1 1133466
Q ss_pred EEeccCCCchhHHHHHHhCCCCCCCcEEEEEecccccCCHHHHHHHHHHHHhcC-CCceEEeeeccCCCC----------
Q 018210 159 LLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFLYEQIHPDD---------- 227 (359)
Q Consensus 159 lv~~DL~~~~~l~~~L~~~g~d~~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f-~~~s~i~ye~i~p~d---------- 227 (359)
.+..|-.++ .||.+.-..+..-.-+-|.+. .++.|+..=... |.|-+.++|.-.-+.
T Consensus 163 w~~~dAE~L----------pFdd~s~D~yTiafGIRN~th--~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~y 230 (296)
T KOG1540|consen 163 WVEGDAEDL----------PFDDDSFDAYTIAFGIRNVTH--IQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQY 230 (296)
T ss_pred EEeCCcccC----------CCCCCcceeEEEecceecCCC--HHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhh
Confidence 666665553 244343333333333333321 122233222222 334444444322210
Q ss_pred ------HHHHHHHHHHHHcCCCCC-CCCCCCChhHHHHHHHhCCCceee
Q 018210 228 ------AFGQQMIRNLESRGCALL-GINATPTLLAKEKLFLDQGWQQAV 269 (359)
Q Consensus 228 ------~Fg~~m~~~l~~~g~~l~-gi~~y~t~~~~~~r~~~~Gw~~~~ 269 (359)
..| .++...++.+.=|. +|..||+-++-..--.+.||+.+.
T Consensus 231 sf~VlpvlG-~~iagd~~sYqYLveSI~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 231 SFDVLPVLG-EIIAGDRKSYQYLVESIRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred hhhhhchhh-HhhhhhHhhhhhHHhhhhcCCCHHHHHHHHHHcCCcccc
Confidence 123 22223333333333 677788877666666889998765
No 115
>PRK14968 putative methyltransferase; Provisional
Probab=22.93 E-value=4.8e+02 Score=22.20 Aligned_cols=42 Identities=12% Similarity=0.159 Sum_probs=25.7
Q ss_pred ceEEEeCCCCchhhhhhccCCCCCcEEEEecchhHHHHHHHHHh
Q 018210 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIE 130 (359)
Q Consensus 87 ~QVV~LGAGlDTr~fRL~~~~~~~~~~~EvD~p~vi~~K~~~i~ 130 (359)
..|+-+|||.-.....+...+ .++.-+|++ |++++.=++.+.
T Consensus 25 ~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s-~~~~~~a~~~~~ 66 (188)
T PRK14968 25 DRVLEVGTGSGIVAIVAAKNG-KKVVGVDIN-PYAVECAKCNAK 66 (188)
T ss_pred CEEEEEccccCHHHHHHHhhc-ceEEEEECC-HHHHHHHHHHHH
Confidence 579999999888877776552 344444554 445444334443
No 116
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=20.52 E-value=1.1e+02 Score=29.00 Aligned_cols=44 Identities=14% Similarity=0.335 Sum_probs=26.5
Q ss_pred cceEEEeCCCCchhhhh-hccCCCCCcEEEEecch-hHHHHHHHHHhh
Q 018210 86 KKQILSLGAGFDTTYFQ-LQAEGKAPHLYVELDFI-EVTSKKAALIET 131 (359)
Q Consensus 86 ~~QVV~LGAGlDTr~fR-L~~~~~~~~~~~EvD~p-~vi~~K~~~i~~ 131 (359)
+.-|+-||||+=|.++= +... ++.+|+=.|.- ..++.=.+.+..
T Consensus 106 p~sVlDigCGlNPlalp~~~~~--~~a~Y~a~DID~~~ve~l~~~l~~ 151 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEA--PGATYIAYDIDSQLVEFLNAFLAV 151 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSS--TT-EEEEEESBHHHHHHHHHHHHH
T ss_pred CchhhhhhccCCceehhhcccC--CCcEEEEEeCCHHHHHHHHHHHHh
Confidence 56899999999999554 3333 56777766663 444544444443
No 117
>PF08557 Lipid_DES: Sphingolipid Delta4-desaturase (DES); InterPro: IPR013866 Sphingolipids are important membrane signalling molecules involved in many different cellular functions in eukaryotes. Sphingolipid delta 4-desaturase catalyses the formation of (E)-sphing-4-enine []. Some proteins in this entry have bifunctional delta 4-desaturase/C-4-hydroxylase activity. Delta 4-desaturated sphingolipids may play a role in early signalling required for entry into meiotic and spermatid differentiation pathways during Drosophila spermatogenesis []. This small protein associates with FA_desaturase IPR005804 from INTERPRO and appears to be specific to sphingolipid delta 4-desaturase. ; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=20.48 E-value=83 Score=21.15 Aligned_cols=33 Identities=18% Similarity=0.310 Sum_probs=25.5
Q ss_pred CCcEEEEecchhHHHHHHHHHhhccccccccccc
Q 018210 109 APHLYVELDFIEVTSKKAALIETHGELKDKVGVT 142 (359)
Q Consensus 109 ~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~ 142 (359)
.+..|..-|-|... +++++|++.|+.+++.|.+
T Consensus 4 ~DF~W~~~~ePH~~-RRk~IL~k~PeIk~L~G~d 36 (39)
T PF08557_consen 4 NDFEWVYTDEPHAS-RRKEILKKHPEIKKLMGPD 36 (39)
T ss_pred cccEEeCCCCccHH-HHHHHHHhChHHHHHhCCC
Confidence 35677888888765 5567889999999999864
No 118
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=20.00 E-value=7.7e+02 Score=24.12 Aligned_cols=40 Identities=13% Similarity=0.002 Sum_probs=28.4
Q ss_pred CCcEEEEEecccccCCHHHHHHHHHHHHhcCC--CceEEeee
Q 018210 182 SLPTFIIAECVLIYLDPDSSRAIVGWASKTFS--TAVFFLYE 221 (359)
Q Consensus 182 ~~PTl~i~EgvL~YL~~~~~~~ll~~la~~f~--~~s~i~ye 221 (359)
...|+++-=|--..|+++...++++.+.+.+. .+..+.+|
T Consensus 51 ~v~~i~~GGGtPs~l~~~~l~~ll~~i~~~~~~~~~~eitie 92 (360)
T TIGR00539 51 PLESIFIGGGTPNTLSVEAFERLFESIYQHASLSDDCEITTE 92 (360)
T ss_pred cccEEEeCCCchhcCCHHHHHHHHHHHHHhCCCCCCCEEEEE
Confidence 36688888888888888888888888877663 33445554
Done!