Query 018211
Match_columns 359
No_of_seqs 139 out of 1980
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 11:40:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018211.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018211hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r44_A Fatty acyl COA syntheta 100.0 1E-48 3.5E-53 379.3 23.8 312 1-350 16-330 (517)
2 3ni2_A 4-coumarate:COA ligase; 100.0 4.5E-48 1.5E-52 376.5 25.4 312 1-347 22-342 (536)
3 1mdb_A 2,3-dihydroxybenzoate-A 100.0 1.4E-47 4.7E-52 373.2 26.5 307 1-344 25-339 (539)
4 3g7s_A Long-chain-fatty-acid-- 100.0 6.7E-48 2.3E-52 376.3 23.9 314 1-349 19-349 (549)
5 3o83_A Peptide arylation enzym 100.0 2.1E-47 7E-52 372.4 26.1 311 1-346 30-350 (544)
6 4fuq_A Malonyl COA synthetase; 100.0 1.7E-47 5.7E-52 369.6 22.1 306 4-347 3-312 (503)
7 1v25_A Long-chain-fatty-acid-C 100.0 6.6E-47 2.3E-51 368.6 25.9 309 1-348 18-337 (541)
8 3t5a_A Long-chain-fatty-acid-- 100.0 5E-47 1.7E-51 364.3 22.8 308 1-349 24-363 (480)
9 3fce_A D-alanine--poly(phospho 100.0 1.5E-47 5E-52 371.0 18.8 302 1-347 1-306 (512)
10 3rix_A Luciferase, luciferin 4 100.0 4.7E-47 1.6E-51 370.4 22.4 313 1-349 20-354 (550)
11 3etc_A AMP-binding protein; ad 100.0 2.1E-46 7.3E-51 367.5 25.3 310 2-348 56-386 (580)
12 1t5h_X 4-chlorobenzoyl COA lig 100.0 1.5E-46 5.2E-51 363.1 23.8 302 1-341 2-310 (504)
13 3ivr_A Putative long-chain-fat 100.0 4.2E-46 1.4E-50 360.5 25.9 307 1-349 6-316 (509)
14 2d1s_A Luciferase, luciferin 4 100.0 4.7E-46 1.6E-50 363.0 25.1 309 2-347 26-354 (548)
15 1pg4_A Acetyl-COA synthetase; 100.0 1.1E-45 3.8E-50 367.1 26.1 313 3-348 78-426 (652)
16 3e7w_A D-alanine--poly(phospho 100.0 3.9E-46 1.3E-50 360.9 20.8 300 1-348 1-306 (511)
17 2v7b_A Benzoate-coenzyme A lig 100.0 1.1E-45 3.7E-50 359.3 23.8 309 3-347 26-344 (529)
18 3rg2_A Enterobactin synthase c 100.0 3.5E-45 1.2E-49 361.7 27.7 311 1-346 27-345 (617)
19 3ipl_A 2-succinylbenzoate--COA 100.0 3.7E-46 1.2E-50 360.3 20.1 304 1-347 1-317 (501)
20 1ry2_A Acetyl-coenzyme A synth 100.0 2E-45 6.9E-50 365.6 24.9 313 3-348 84-432 (663)
21 4dg8_A PA1221; ANL superfamily 100.0 3.1E-45 1.1E-49 361.4 25.9 291 2-347 28-321 (620)
22 3tsy_A Fusion protein 4-coumar 100.0 2.7E-45 9.2E-50 380.1 25.5 312 1-347 61-389 (979)
23 3c5e_A Acyl-coenzyme A synthet 100.0 3.8E-45 1.3E-49 358.1 23.3 306 4-347 41-366 (570)
24 4gr5_A Non-ribosomal peptide s 100.0 4.9E-45 1.7E-49 357.6 23.5 293 2-347 76-371 (570)
25 3kxw_A Saframycin MX1 syntheta 100.0 1.4E-45 4.6E-50 363.2 19.6 309 1-348 11-340 (590)
26 1amu_A GRSA, gramicidin synthe 100.0 3.5E-45 1.2E-49 357.8 22.2 295 1-348 39-336 (563)
27 3gqw_A Fatty acid AMP ligase; 100.0 3.3E-44 1.1E-48 352.3 25.5 308 2-348 22-350 (576)
28 3nyq_A Malonyl-COA ligase; A/B 100.0 1.3E-44 4.5E-49 349.5 21.6 294 1-348 22-317 (505)
29 3l8c_A D-alanine--poly(phospho 100.0 7.4E-45 2.5E-49 352.8 19.8 300 1-347 4-309 (521)
30 3ite_A SIDN siderophore synthe 100.0 1.1E-43 3.8E-48 347.5 16.2 301 1-348 20-339 (562)
31 2vsq_A Surfactin synthetase su 100.0 4.1E-42 1.4E-46 365.0 20.1 298 2-348 465-766 (1304)
32 4gs5_A Acyl-COA synthetase (AM 99.9 2.7E-27 9.3E-32 218.3 10.9 158 170-350 37-194 (358)
33 3qov_A Phenylacetate-coenzyme 99.9 1.2E-24 4E-29 206.2 11.5 158 170-343 86-246 (436)
34 3hgu_A EHPF; phenazine, antibi 99.9 2.6E-24 8.8E-29 199.4 12.6 163 167-349 88-279 (369)
35 2y27_A Phenylacetate-coenzyme 99.9 2.4E-23 8.3E-28 197.2 13.2 159 167-342 87-249 (437)
36 2y4o_A Phenylacetate-coenzyme 99.9 2.6E-23 8.8E-28 197.3 12.4 159 167-342 89-251 (443)
37 4eql_A 4-substituted benzoates 93.7 0.093 3.2E-06 50.4 6.2 31 167-197 90-121 (581)
38 2y27_A Phenylacetate-coenzyme 91.4 1.5 5E-05 40.4 11.0 90 25-132 108-199 (437)
39 2y4o_A Phenylacetate-coenzyme 91.2 1.7 5.7E-05 40.1 11.2 89 25-131 110-200 (443)
40 3qov_A Phenylacetate-coenzyme 91.1 1.7 5.9E-05 40.0 11.2 90 25-132 104-195 (436)
41 3ipl_A 2-succinylbenzoate--COA 82.1 18 0.0006 33.7 12.7 99 13-132 160-268 (501)
42 2d1s_A Luciferase, luciferin 4 79.2 13 0.00043 35.3 10.7 97 16-131 192-299 (548)
43 3hgu_A EHPF; phenazine, antibi 78.3 8.7 0.0003 34.2 8.8 86 25-129 109-219 (369)
44 3g7s_A Long-chain-fatty-acid-- 74.9 19 0.00066 34.0 10.6 104 168-284 32-139 (549)
45 1mdb_A 2,3-dihydroxybenzoate-A 72.3 34 0.0012 32.2 11.6 97 14-131 180-288 (539)
46 3o83_A Peptide arylation enzym 71.7 36 0.0012 32.0 11.7 96 14-130 189-296 (544)
47 3ivr_A Putative long-chain-fat 70.9 16 0.00054 34.1 8.9 95 168-283 19-117 (509)
48 3ni2_A 4-coumarate:COA ligase; 70.1 16 0.00054 34.4 8.7 98 168-284 35-136 (536)
49 3rix_A Luciferase, luciferin 4 69.7 26 0.00087 33.1 10.1 89 25-131 208-297 (550)
50 3r44_A Fatty acyl COA syntheta 67.7 50 0.0017 30.8 11.6 96 14-131 168-274 (517)
51 3t5a_A Long-chain-fatty-acid-- 62.4 30 0.001 31.8 8.8 103 168-285 37-148 (480)
52 4fuq_A Malonyl COA synthetase; 61.6 28 0.00097 32.4 8.6 79 189-279 28-110 (503)
53 1t5h_X 4-chlorobenzoyl COA lig 60.8 34 0.0012 31.8 9.0 84 188-283 28-117 (504)
54 1amu_A GRSA, gramicidin synthe 60.8 34 0.0012 32.4 9.1 81 189-281 64-148 (563)
55 1v25_A Long-chain-fatty-acid-C 60.4 25 0.00087 33.0 8.1 99 168-283 31-133 (541)
56 3rg2_A Enterobactin synthase c 60.4 79 0.0027 30.2 11.7 96 14-130 182-289 (617)
57 3fce_A D-alanine--poly(phospho 59.8 22 0.00074 33.2 7.4 95 14-128 142-248 (512)
58 3e7w_A D-alanine--poly(phospho 58.7 27 0.00094 32.5 7.9 96 14-129 141-248 (511)
59 3kxw_A Saframycin MX1 syntheta 58.7 28 0.00097 33.0 8.2 96 13-128 164-273 (590)
60 4b2g_A GH3-1 auxin conjugating 56.9 3 0.0001 40.2 0.9 31 167-197 96-127 (609)
61 2v7b_A Benzoate-coenzyme A lig 56.4 28 0.00095 32.6 7.6 83 189-283 48-134 (529)
62 3tbh_A O-acetyl serine sulfhyd 54.6 97 0.0033 27.1 10.3 60 65-124 68-127 (334)
63 3etc_A AMP-binding protein; ad 54.0 38 0.0013 32.2 8.2 94 168-277 69-166 (580)
64 4gs5_A Acyl-COA synthetase (AM 53.4 74 0.0025 28.0 9.5 83 25-130 55-138 (358)
65 3c5e_A Acyl-coenzyme A synthet 51.9 29 0.001 32.9 7.0 100 168-283 56-160 (570)
66 4gr5_A Non-ribosomal peptide s 51.8 49 0.0017 31.3 8.5 89 168-277 88-180 (570)
67 3tsy_A Fusion protein 4-coumar 49.8 45 0.0016 34.0 8.4 95 167-280 73-171 (979)
68 3nyq_A Malonyl-COA ligase; A/B 49.7 95 0.0033 28.7 10.1 95 13-129 152-257 (505)
69 1ry2_A Acetyl-coenzyme A synth 49.3 58 0.002 31.6 8.7 96 167-277 94-194 (663)
70 4epl_A Jasmonic acid-amido syn 48.6 4.9 0.00017 38.5 0.8 31 167-197 95-126 (581)
71 1pg4_A Acetyl-COA synthetase; 46.1 39 0.0013 32.7 6.9 94 168-276 89-186 (652)
72 3gqw_A Fatty acid AMP ligase; 39.9 75 0.0026 29.8 7.8 84 188-283 48-142 (576)
73 3l8c_A D-alanine--poly(phospho 39.0 51 0.0017 30.7 6.3 76 189-276 29-108 (521)
74 3ezx_A MMCP 1, monomethylamine 38.1 1.6E+02 0.0054 23.8 8.6 89 209-323 91-195 (215)
75 4dg8_A PA1221; ANL superfamily 37.0 78 0.0027 30.4 7.4 64 189-254 52-118 (620)
76 4eez_A Alcohol dehydrogenase 1 34.8 1.5E+02 0.0051 25.6 8.4 56 63-121 159-214 (348)
77 2ayi_A Aminopeptidase T; metal 32.5 91 0.0031 28.3 6.6 51 33-98 5-57 (408)
78 1zsy_A Mitochondrial 2-enoyl t 32.4 1.2E+02 0.0043 26.4 7.5 59 63-122 163-223 (357)
79 3vc3_A Beta-cyanoalnine syntha 32.1 2.6E+02 0.0087 24.4 10.8 60 65-124 83-142 (344)
80 2o1e_A YCDH; alpha-beta protei 31.5 1.9E+02 0.0065 24.9 8.3 72 69-140 190-265 (312)
81 3dzz_A Putative pyridoxal 5'-p 31.0 1.9E+02 0.0066 25.0 8.6 55 65-122 106-167 (391)
82 3l6b_A Serine racemase; pyrido 29.9 1.7E+02 0.006 25.5 7.9 58 68-126 76-133 (346)
83 1zjc_A Aminopeptidase AMPS; me 29.8 1E+02 0.0035 28.0 6.4 52 32-98 7-60 (418)
84 4h1h_A LMO1638 protein; MCCF-l 28.6 2.3E+02 0.0077 24.6 8.3 60 63-122 7-85 (327)
85 4aec_A Cysteine synthase, mito 28.3 3.4E+02 0.012 24.6 10.5 59 65-123 171-229 (430)
86 3ite_A SIDN siderophore synthe 27.9 1.3E+02 0.0043 28.2 7.1 83 168-254 33-121 (562)
87 3sr3_A Microcin immunity prote 27.5 2.4E+02 0.0083 24.6 8.3 60 63-122 8-86 (336)
88 3tqh_A Quinone oxidoreductase; 27.5 2.1E+02 0.0073 24.3 8.1 55 63-121 148-202 (321)
89 1eg5_A Aminotransferase; PLP-d 27.5 1.3E+02 0.0045 26.0 6.8 56 66-122 87-146 (384)
90 2jtq_A Phage shock protein E; 26.1 1.4E+02 0.0048 19.5 5.8 32 63-94 36-67 (85)
91 3ju7_A Putative PLP-dependent 25.8 1.4E+02 0.0048 26.3 6.7 56 63-121 73-135 (377)
92 3tla_A MCCF; serine protease, 25.4 2.7E+02 0.0093 24.7 8.3 60 63-122 38-116 (371)
93 4h27_A L-serine dehydratase/L- 25.4 2.1E+02 0.0072 25.2 7.7 55 72-126 96-150 (364)
94 2prs_A High-affinity zinc upta 25.1 1.6E+02 0.0056 24.9 6.6 69 70-140 175-249 (284)
95 3ss7_X D-serine dehydratase; t 24.0 2.5E+02 0.0086 25.5 8.1 60 70-129 161-220 (442)
96 1z7w_A Cysteine synthase; tran 23.8 3.4E+02 0.012 23.2 9.2 60 65-124 63-122 (322)
97 2jwk_A Protein TOLR; periplasm 23.5 62 0.0021 20.7 2.9 37 3-39 32-68 (74)
98 3r7f_A Aspartate carbamoyltran 23.3 3.6E+02 0.012 23.2 8.7 59 64-122 32-99 (304)
99 3fpc_A NADP-dependent alcohol 23.0 3.4E+02 0.012 23.4 8.7 55 63-121 162-217 (352)
100 2egu_A Cysteine synthase; O-ac 22.8 3.5E+02 0.012 22.9 8.6 58 66-124 63-120 (308)
101 2rkb_A Serine dehydratase-like 22.5 3.1E+02 0.011 23.4 8.1 59 68-127 54-112 (318)
102 2pfu_A Biopolymer transport EX 22.3 1.3E+02 0.0043 20.6 4.5 37 3-39 44-80 (99)
103 4e5s_A MCCFLIKE protein (BA_56 22.1 2.7E+02 0.0093 24.2 7.6 60 63-122 7-85 (331)
104 2q3b_A Cysteine synthase A; py 21.9 3.7E+02 0.013 22.8 10.2 57 66-123 65-121 (313)
105 3ip1_A Alcohol dehydrogenase, 21.9 4E+02 0.014 23.6 9.0 55 64-122 210-265 (404)
106 4hvk_A Probable cysteine desul 20.9 1.7E+02 0.006 25.1 6.3 56 66-122 86-145 (382)
107 4eb5_A Probable cysteine desul 20.8 1.5E+02 0.005 25.7 5.7 54 66-120 86-143 (382)
108 2pqm_A Cysteine synthase; OASS 20.6 4.2E+02 0.014 22.9 10.1 58 66-124 76-133 (343)
109 3ri6_A O-acetylhomoserine sulf 20.4 2.6E+02 0.009 25.2 7.4 26 316-341 356-382 (430)
110 1p5j_A L-serine dehydratase; l 20.2 3.5E+02 0.012 23.8 8.1 58 69-127 94-151 (372)
111 3cx3_A Lipoprotein; zinc-bindi 20.0 1.5E+02 0.005 25.2 5.3 69 70-140 178-252 (284)
No 1
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=1e-48 Score=379.33 Aligned_cols=312 Identities=22% Similarity=0.337 Sum_probs=257.8
Q ss_pred ChHHHHHHHcCCCCCCceEEeeCCc--cccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCC
Q 018211 1 MEVFKAAYKKGSMARDSVAIRADQK--SYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS 78 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~~~~--~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~ 78 (359)
+|+.+.|.++++.+|+++|+++.++ ++||+||.++++++|..|.+ +|+++||+|+++++|+
T Consensus 16 ~~l~~~l~~~a~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~lA~~L~~-----------------~Gv~~gd~V~i~~~~~ 78 (517)
T 3r44_A 16 KNIGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTA-----------------LGIAKGDRVALLMPNS 78 (517)
T ss_dssp GCHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHH-----------------TTCCTTCEEEEECCSS
T ss_pred cCHHHHHHHHHHhCCCCeEEEeCCcCceeeHHHHHHHHHHHHHHHHH-----------------cCCCCcCEEEEEcCCC
Confidence 4788999999999999999998766 99999999999999999999 6999999999999999
Q ss_pred HHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCCCCCCcccc-cc
Q 018211 79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTV-FD 157 (359)
Q Consensus 79 ~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 157 (359)
+++++++|||+++|++++|+++.++.+++.+++++++++++|++....+.+.............+.. ......... ..
T Consensus 79 ~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 157 (517)
T 3r44_A 79 VEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDW-IGADSLAERLRS 157 (517)
T ss_dssp HHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCEE-EEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEEc-cCcccHHHHhhc
Confidence 9999999999999999999999999999999999999999999998877776655433211100000 000000000 00
Q ss_pred cchhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHHHHHHhhhcC
Q 018211 158 QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAG 237 (359)
Q Consensus 158 ~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G 237 (359)
...........++|+++|+|||||||.||||+++|+++...+......+++.++|++++.+|++|..++...++. ++.|
T Consensus 158 ~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~-~~~G 236 (517)
T 3r44_A 158 AAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFS-AMRG 236 (517)
T ss_dssp CCCCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHHHHHHH-HHHT
T ss_pred cCcCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHH-HhcC
Confidence 011112234567899999999999999999999999999999998999999999999999999999999754444 5599
Q ss_pred cEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCCH
Q 018211 238 ATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPL 317 (359)
Q Consensus 238 ~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~ 317 (359)
+++++.+.+++..+++. +.++++|++.++|++++.+.+.. .....++++||.+++||+++++
T Consensus 237 ~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~--------~~~~~~~~~lr~i~~gGe~l~~ 298 (517)
T 3r44_A 237 VTLISMPQFDATKVWSL----------IVEERVCIGGAVPAILNFMRQVP--------EFAELDAPDFRYFITGGAPMPE 298 (517)
T ss_dssp CEEEECSSCCHHHHHHH----------HHHTTCCEEEECHHHHHHHHHSH--------HHHHCCCTTCCEEEECSSCCCH
T ss_pred eEEEEeCCCCHHHHHHH----------HHHhCCeEEEeHHHHHHHHHhCc--------ccccCCCCcccEEEECCCCCCH
Confidence 99999999999999999 78899999999999999998762 3345678999999999999999
Q ss_pred HHHHHHHHHhCCcccccccCCcCcccccccccc
Q 018211 318 PVMQQWETITGHRLLERYGMTEGCTKGRHCWQS 350 (359)
Q Consensus 318 ~~~~~~~~~~~~~v~~~YG~TE~g~~~~~~~~~ 350 (359)
++.+.|.+. |+++++.||+||+++.++.....
T Consensus 299 ~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~ 330 (517)
T 3r44_A 299 ALIKIYAAK-NIEVVQGYALTESCGGGTLLLSE 330 (517)
T ss_dssp HHHHHHHHT-TCEEEEEEECGGGTTCEEEECGG
T ss_pred HHHHHHHhc-CCcEEEeecccccccceeecCCc
Confidence 999999886 99999999999999876655443
No 2
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=4.5e-48 Score=376.49 Aligned_cols=312 Identities=22% Similarity=0.294 Sum_probs=263.8
Q ss_pred ChHHHHHHHcCCCCCCceEEeeC--CccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCC
Q 018211 1 MEVFKAAYKKGSMARDSVAIRAD--QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS 78 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~~--~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~ 78 (359)
|++.+.|.++++.+|+++|+++. ++++||+||.++++++|..|.+ +|+++||+|+++++|+
T Consensus 22 ~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~-----------------~Gv~~gd~V~i~~~~~ 84 (536)
T 3ni2_A 22 LPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNK-----------------IGIQQGDVIMLFLPSS 84 (536)
T ss_dssp CCHHHHHTTTGGGSTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-----------------TTCCTTCEEEEECCSS
T ss_pred CcHHHHHHHHhhcCCCceEEEECCCCCEEEHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcCCc
Confidence 57899999999999999999985 6899999999999999999999 6999999999999999
Q ss_pred HHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCCCCC-Ccccccc
Q 018211 79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVS-SETTVFD 157 (359)
Q Consensus 79 ~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 157 (359)
+++++++|||+++|++++|+++.++.+++.+++++++++++|++....+.+.............++...... .......
T Consensus 85 ~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (536)
T 3ni2_A 85 PEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESDVKVMCVDSAPDGCLHFSELTQ 164 (536)
T ss_dssp HHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHHTCEEEESSCCCTTCEETHHHHT
T ss_pred HHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhcCceEEEecCCCCCccCHHHHhh
Confidence 999999999999999999999999999999999999999999999887777666544444444443221100 0111111
Q ss_pred c-chhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHH----hhccCCCceEEEecCchhhHHHHHHHHH
Q 018211 158 Q-SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE----AWEYTSADQFLHCLPLHHVHGLFNALLA 232 (359)
Q Consensus 158 ~-~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~----~~~~~~~d~~l~~~pl~h~~~~~~~~~~ 232 (359)
. ..........++|+++|+|||||||.||||+++|++++..+..... .+++.++|++++.+|++|.+++...++.
T Consensus 165 ~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~ 244 (536)
T 3ni2_A 165 ADENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLC 244 (536)
T ss_dssp SCGGGCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHH
T ss_pred ccccccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHH
Confidence 1 1112233456799999999999999999999999999988766543 3567899999999999999999777888
Q ss_pred hhhcCcEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecC
Q 018211 233 PLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGS 312 (359)
Q Consensus 233 ~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G 312 (359)
++..|+++++.+.+++..+++. ++++++|++.++|+++..+.+... ....++++||.+++||
T Consensus 245 ~l~~G~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~l~~lr~i~~gG 306 (536)
T 3ni2_A 245 GLRVGAPILIMPKFEIGSLLGL----------IEKYKVSIAPVVPPVMMSIAKSPD--------LDKHDLSSLRMIKSGG 306 (536)
T ss_dssp HHHHTCCEEECSSCCHHHHHHH----------HHHHTCCEEEECHHHHHHHHTCSC--------GGGSCCTTCCEEEEES
T ss_pred HHhcCCEEEEcCCCCHHHHHHH----------HHHhCCeEEEccHHHHHHHHhCcc--------cccCCCccceEEEECC
Confidence 9999999999999999999999 888999999999999999987632 2335688999999999
Q ss_pred CCCCHHHHHHHHHHh-CCcccccccCCcCccccccc
Q 018211 313 SALPLPVMQQWETIT-GHRLLERYGMTEGCTKGRHC 347 (359)
Q Consensus 313 ~~l~~~~~~~~~~~~-~~~v~~~YG~TE~g~~~~~~ 347 (359)
+++++++.++|++.+ ++++++.||+||++++++.+
T Consensus 307 e~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~ 342 (536)
T 3ni2_A 307 APLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMC 342 (536)
T ss_dssp SCCCHHHHHHHHHHCTTSEEEEEEECGGGSSEEEEC
T ss_pred CCCCHHHHHHHHHHCCCCCccccccccccchhhhcc
Confidence 999999999999999 89999999999999876544
No 3
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=1.4e-47 Score=373.23 Aligned_cols=307 Identities=19% Similarity=0.230 Sum_probs=255.9
Q ss_pred ChHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHH
Q 018211 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~ 80 (359)
+++.+.|.++++.+|+++|+++.++++||+||.++++++|..|.+ +|+++||+|+++++|+++
T Consensus 25 ~tl~~~l~~~a~~~p~~~A~~~~~~~~Ty~eL~~~~~~lA~~L~~-----------------~Gv~~gd~V~i~~~~~~~ 87 (539)
T 1mdb_A 25 ETFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQK-----------------LGIQQKDRVVVQLPNIKE 87 (539)
T ss_dssp CCHHHHHHHHHHHHTTSEEEEETTEEEEHHHHHHHHHHHHHHHHH-----------------HTCCTTCEEEECCCSSHH
T ss_pred CCHHHHHHHHHHHCCCCEEEEeCCCcccHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcCCcHH
Confidence 368899999999999999999999999999999999999999999 799999999999999999
Q ss_pred HHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEecccc-----HHHHHHHhhhcCC-ceeccCCCCCCCCccc
Q 018211 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY-----REVLQNVASKSGA-KFSLIPPVPNVSSETT 154 (359)
Q Consensus 81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 154 (359)
+++++|||+++|++++|+++.++.+++.+++++++++++|++... ...+..+....+. ...++.... .....
T Consensus 88 ~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 165 (539)
T 1mdb_A 88 FFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEA--EEFLP 165 (539)
T ss_dssp HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCC--TTSEE
T ss_pred HHHHHHHHHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCc--cchhh
Confidence 999999999999999999999999999999999999999998753 1233333222221 111111110 00111
Q ss_pred cccc-chhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHH-HHHH
Q 018211 155 VFDQ-SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN-ALLA 232 (359)
Q Consensus 155 ~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~-~~~~ 232 (359)
.... ..........++|+++|+|||||||.||||+++|+++...+......++++++|++++.+|++|.+++.. .++.
T Consensus 166 ~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~ 245 (539)
T 1mdb_A 166 LEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLG 245 (539)
T ss_dssp GGGCCCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHH
T ss_pred hhhccccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchhhHHHHHH
Confidence 1111 0011123456789999999999999999999999999999988888889999999999999999999864 6889
Q ss_pred hhhcCcEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecC
Q 018211 233 PLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGS 312 (359)
Q Consensus 233 ~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G 312 (359)
+|+.|+++++.+.+++..+++. ++++++|++.++|+++..+++... ....++++||.+++||
T Consensus 246 ~l~~G~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~l~~lr~~~~gG 307 (539)
T 1mdb_A 246 VLYAGGRVVLSPSPSPDDAFPL----------IEREKVTITALVPPLAMVWMDAAS--------SRRDDLSSLQVLQVGG 307 (539)
T ss_dssp HHHTTCEEEECSSSSHHHHHHH----------HHHHTCSEEEECHHHHHHHHHHHH--------HCCCCCTTCCEEEEES
T ss_pred HHHhCCEEEECCCCCHHHHHHH----------HHHcCCeEEEccHHHHHHHHhCcc--------ccCCCccceeEEEEcC
Confidence 9999999999999999999999 788999999999999999987622 2235689999999999
Q ss_pred CCCCHHHHHHHHHHhCCcccccccCCcCcccc
Q 018211 313 SALPLPVMQQWETITGHRLLERYGMTEGCTKG 344 (359)
Q Consensus 313 ~~l~~~~~~~~~~~~~~~v~~~YG~TE~g~~~ 344 (359)
+++++++.++|.+.+|+++++.||+||++..+
T Consensus 308 ~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~ 339 (539)
T 1mdb_A 308 AKFSAEAARRVKAVFGCTLQQVFGMAEGLVNY 339 (539)
T ss_dssp SCCCHHHHTTHHHHTCSEEEEEEECTTSCEEE
T ss_pred CCCCHHHHHHHHHHhCCcEEEEEcCCCCcccc
Confidence 99999999999999999999999999976433
No 4
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=6.7e-48 Score=376.31 Aligned_cols=314 Identities=21% Similarity=0.273 Sum_probs=262.8
Q ss_pred ChHHHHHHHcCCCCCCceEEeeCC--------ccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEE
Q 018211 1 MEVFKAAYKKGSMARDSVAIRADQ--------KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIG 72 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~~~--------~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~ 72 (359)
+++.+.|.++++.+|+++|+++.+ +++||+||.++++++|..|.+ .|+++||+|+
T Consensus 19 ~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~-----------------~Gv~~gd~V~ 81 (549)
T 3g7s_A 19 ISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISR-----------------KGVRKGEHVG 81 (549)
T ss_dssp CCTTHHHHHHHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHH-----------------TTCCTTCEEE
T ss_pred CCHHHHHHHHHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEE
Confidence 578899999999999999999866 899999999999999999999 6999999999
Q ss_pred EEcCCCHHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCCCCCCc
Q 018211 73 IVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSE 152 (359)
Q Consensus 73 i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (359)
++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++....+.+.......+....++... .....
T Consensus 82 i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 160 (549)
T 3g7s_A 82 VCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTGVERVFVVGG-EVNSL 160 (549)
T ss_dssp EECCSSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSCCCEEEEETC-SSSCH
T ss_pred EECCCCHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCCCcEEEEeCC-CCcCH
Confidence 99999999999999999999999999999999999999999999999999988887776655544332222211 11111
Q ss_pred cccccc-chhhhcCCCC-CCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHHHH
Q 018211 153 TTVFDQ-SQAEKMDGQR-GEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNAL 230 (359)
Q Consensus 153 ~~~~~~-~~~~~~~~~~-~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~ 230 (359)
...... .......... ++|+++|+|||||||.||||+++|+++...+......+++.++|++++.+|++|..++.. +
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~-~ 239 (549)
T 3g7s_A 161 SEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFGL-V 239 (549)
T ss_dssp HHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHHH-H
T ss_pred HHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHHH-H
Confidence 111100 0001112223 389999999999999999999999999999999888999999999999999999999865 7
Q ss_pred HHhhhcCcEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEe
Q 018211 231 LAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMC 310 (359)
Q Consensus 231 ~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~ 310 (359)
+.++..|+++++.+.+++..+++. ++++++|++.++|+++..+.+...... ...+++++|.+++
T Consensus 240 ~~~l~~G~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~~~------~~~~~~~lr~~~~ 303 (549)
T 3g7s_A 240 NLMVTVGNEYVVMGMFNQEMLAEN----------IEKYKGTFSWAVPPALNVLVNTLESSN------KTYDWSYLKVFAT 303 (549)
T ss_dssp TTHHHHCCEEEEESSCCHHHHHHH----------HHHTTCCEEEECHHHHHHHHHHHHHSC------CCCCCTTCCEEEE
T ss_pred HHHHhcCceEEEcCCCCHHHHHHH----------HHHhCCeEEEeCCHHHHHHHhhhhhhc------ccCCccceeEEEe
Confidence 888999999999999999999999 888999999999999999987632111 1146789999999
Q ss_pred cCCCCCHHHHHHHHHH----hC---CcccccccCCcCccccccccc
Q 018211 311 GSSALPLPVMQQWETI----TG---HRLLERYGMTEGCTKGRHCWQ 349 (359)
Q Consensus 311 ~G~~l~~~~~~~~~~~----~~---~~v~~~YG~TE~g~~~~~~~~ 349 (359)
||+++++++.++|.+. +| +++++.||+||++++++....
T Consensus 304 gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~ 349 (549)
T 3g7s_A 304 GAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPP 349 (549)
T ss_dssp ESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCG
T ss_pred CCccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhhcCCc
Confidence 9999999999999988 56 899999999999987766544
No 5
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=2.1e-47 Score=372.42 Aligned_cols=311 Identities=16% Similarity=0.198 Sum_probs=256.1
Q ss_pred ChHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHH
Q 018211 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~ 80 (359)
+++.+.|.++++.+|+++|++++++++||+||.++++++|..|.+ +|+++||+|+++++|+++
T Consensus 30 ~tl~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~-----------------~Gv~~gd~V~i~~~n~~~ 92 (544)
T 3o83_A 30 QPLTRILTVGVQSHPHSLAIICGERQLSYIELDRLSTNLATRLAE-----------------KGLGKGDTALVQLPNVAE 92 (544)
T ss_dssp CCTTHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHH-----------------TTCCTTCEEEECCCSSHH
T ss_pred CCHHHHHHHHHHhCCCceEEEcCCCceeHHHHHHHHHHHHHHHHH-----------------CCCCCCCEEEEECCCCHH
Confidence 467899999999999999999999999999999999999999999 699999999999999999
Q ss_pred HHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccH-----HHHHHHhhhcC-Cce-eccCCCCCCCCcc
Q 018211 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR-----EVLQNVASKSG-AKF-SLIPPVPNVSSET 153 (359)
Q Consensus 81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~-~~~-~~~~~~~~~~~~~ 153 (359)
+++++|||+++|++++|+++.++.+++.+++++++++++|++.... .....+..... ... .............
T Consensus 93 ~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (544)
T 3o83_A 93 FYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDFGLL 172 (544)
T ss_dssp HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTTSEEHH
T ss_pred HHHHHHHHHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCccccchh
Confidence 9999999999999999999999999999999999999999987543 23333322221 111 1111110000000
Q ss_pred ccccc--chhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHH-HH
Q 018211 154 TVFDQ--SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN-AL 230 (359)
Q Consensus 154 ~~~~~--~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~-~~ 230 (359)
+.... ..........++++++|+|||||||.||||+++|+++...+......+++.++|++++.+|++|.+++.. .+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~ 252 (544)
T 3o83_A 173 DWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGA 252 (544)
T ss_dssp HHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHSSHH
T ss_pred hhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEeecchHHH
Confidence 00000 0011113446789999999999999999999999999999999999999999999999999999998864 57
Q ss_pred HHhhhcCcEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEe
Q 018211 231 LAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMC 310 (359)
Q Consensus 231 ~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~ 310 (359)
+.++..|+++++.+.+++..+++. ++++++|++.++|+++..+++... ....++++||.+++
T Consensus 253 ~~~l~~G~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~~~~lr~i~~ 314 (544)
T 3o83_A 253 LGVLHAGGCVVMAPNPEPLNCFSI----------IQRHQVNMASLVPSAVIMWLEKAA--------QYKDQIQSLKLLQV 314 (544)
T ss_dssp HHHHHTTCEEEECSSCCHHHHHHH----------HHHHTCCEEEECHHHHHHHHHHHT--------TTHHHHTTCCEEEE
T ss_pred HHHHHcCCEEEECCCCCHHHHHHH----------HHHHCCCEEEechHHHHHHHhchh--------hccccCCcceEEEE
Confidence 889999999999999999999998 888999999999999999987632 22346889999999
Q ss_pred cCCCCCHHHHHHHHHHhCCcccccccCCcCcccccc
Q 018211 311 GSSALPLPVMQQWETITGHRLLERYGMTEGCTKGRH 346 (359)
Q Consensus 311 ~G~~l~~~~~~~~~~~~~~~v~~~YG~TE~g~~~~~ 346 (359)
||+++++++.++|.+.+|+++++.||+||++..+..
T Consensus 315 gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~ 350 (544)
T 3o83_A 315 GGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTR 350 (544)
T ss_dssp ESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEEECC
T ss_pred cCCCCCHHHHHHHHHHhCCcEEeeeccccccceeec
Confidence 999999999999999999999999999999865443
No 6
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=1.7e-47 Score=369.63 Aligned_cols=306 Identities=30% Similarity=0.454 Sum_probs=252.3
Q ss_pred HHHHHHcCCCCCCceEEe---eCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHH
Q 018211 4 FKAAYKKGSMARDSVAIR---ADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (359)
Q Consensus 4 ~~~l~~~a~~~p~~~ai~---~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~ 80 (359)
.+.|.+.++.+|+++|+. ++++++||+||.++++++|..|.+ +|+++||+|+++++|+++
T Consensus 3 ~~l~~~~a~~~p~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~-----------------~Gv~~gd~V~i~~~~~~~ 65 (503)
T 4fuq_A 3 ANLFARLFDKLDDPHKLAIETAAGDKISYAELVARAGRVANVLVA-----------------RGLQVGDRVAAQTEKSVE 65 (503)
T ss_dssp CCHHHHHHSCCSCTTSEEEEETTCCEEEHHHHHHHHHHHHHHHHH-----------------TTCCTTCEEEEECCSCHH
T ss_pred hhHHHHHHHhCCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEECCCCHH
Confidence 457788889999999887 467899999999999999999999 699999999999999999
Q ss_pred HHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCCCCCCccc-ccccc
Q 018211 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETT-VFDQS 159 (359)
Q Consensus 81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 159 (359)
+++++|||+++|++++|+++.++.+++.+++++++++++|++.+..+.+.............+..... ..... .....
T Consensus 66 ~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 144 (503)
T 4fuq_A 66 ALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPDGR-GSLTDAAAGAS 144 (503)
T ss_dssp HHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHTCEEEECCTTSC-SHHHHHHHTSC
T ss_pred HHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcCceEEEecCCcc-cccchhhhcCC
Confidence 99999999999999999999999999999999999999999987655544444333332222221110 00000 00001
Q ss_pred hhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHHHHHHhhhcCcE
Q 018211 160 QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGAT 239 (359)
Q Consensus 160 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~ 239 (359)
.........++|+++|+|||||||.||||+++|+++.+.+......++++++|++++.+|++|.+++...++.+++.|++
T Consensus 145 ~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~ 224 (503)
T 4fuq_A 145 EAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGS 224 (503)
T ss_dssp SCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCE
T ss_pred CCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCE
Confidence 11122345678999999999999999999999999999999999999999999999999999999976667788999999
Q ss_pred EEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCCHHH
Q 018211 240 VEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPV 319 (359)
Q Consensus 240 i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~ 319 (359)
+++.+.++++.+++. ++ ++|++.++|+++..+++... ....+++++|.+++||+++++++
T Consensus 225 ~~~~~~~~~~~~~~~----------i~--~~t~~~~~P~~~~~l~~~~~--------~~~~~~~~lr~~~~gg~~l~~~~ 284 (503)
T 4fuq_A 225 MIFLPKFDPDKILDL----------MA--RATVLMGVPTFYTRLLQSPR--------LTKETTGHMRLFISGSAPLLADT 284 (503)
T ss_dssp EEECSSCCHHHHHHH----------HT--TCCEEEECHHHHHHHHTCTT--------CSTTTTTTCCEEEECSSCCCHHH
T ss_pred EEEcCCCCHHHHHHH----------Hh--hcCEEEEHHHHHHHHHhCCC--------ccccchhhcEEEEECCCCCCHHH
Confidence 999999999999998 55 79999999999999988633 22345789999999999999999
Q ss_pred HHHHHHHhCCcccccccCCcCccccccc
Q 018211 320 MQQWETITGHRLLERYGMTEGCTKGRHC 347 (359)
Q Consensus 320 ~~~~~~~~~~~v~~~YG~TE~g~~~~~~ 347 (359)
.++|.+.+|+++++.||+||++..++..
T Consensus 285 ~~~~~~~~~~~~~~~YG~TE~~~~~~~~ 312 (503)
T 4fuq_A 285 HREWSAKTGHAVLERYGMTETNMNTSNP 312 (503)
T ss_dssp HHHHHHHHSCCEEECCEETTTEECBCCC
T ss_pred HHHHHHHhCCCccceEcccccCcccccC
Confidence 9999999999999999999999876543
No 7
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=6.6e-47 Score=368.61 Aligned_cols=309 Identities=18% Similarity=0.270 Sum_probs=254.2
Q ss_pred ChHHHHHHHcCCCCCCceEEee----CCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcC
Q 018211 1 MEVFKAAYKKGSMARDSVAIRA----DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAK 76 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~----~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~ 76 (359)
+++.+.|.++++.+|+++|+++ .++++||+||.++++++|..|.+ +|+++||+|+++++
T Consensus 18 ~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~-----------------~Gv~~gd~V~i~~~ 80 (541)
T 1v25_A 18 LNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRA-----------------LGVGVGDRVATLGF 80 (541)
T ss_dssp CCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHH-----------------TTCCTTCEEEEECC
T ss_pred CCHHHHHHHHHHhCCCceEEEEecCCCCceecHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcC
Confidence 4688999999999999999993 56899999999999999999999 69999999999999
Q ss_pred CCHHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCc--eeccCCCCC--CCCc
Q 018211 77 PSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAK--FSLIPPVPN--VSSE 152 (359)
Q Consensus 77 n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~ 152 (359)
|++++++++|||+++|++++|+++.++.+++.+++++++++++|++.+..+.+.......+.. +..+..... ....
T Consensus 81 n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (541)
T 1v25_A 81 NHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAY 160 (541)
T ss_dssp SSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCCTTCEEH
T ss_pred CcHHHHHHHHHHHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCCCCcccccH
Confidence 999999999999999999999999999999999999999999999998877766655443321 222221110 0000
Q ss_pred ccccccchhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHH--HHHhhccCCCceEEEecCchhhHHHHHHH
Q 018211 153 TTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQM--LTEAWEYTSADQFLHCLPLHHVHGLFNAL 230 (359)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~--~~~~~~~~~~d~~l~~~pl~h~~~~~~~~ 230 (359)
....... .......++++++|+|||||||.||||+++|+++...... ....++++++|++++.+|++|..++. .+
T Consensus 161 ~~~~~~~--~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~-~~ 237 (541)
T 1v25_A 161 EEALGEE--ADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWC-LP 237 (541)
T ss_dssp HHHCCSC--CCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHT-HH
T ss_pred HHHhhcc--CCcccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHH-HH
Confidence 0010000 0113345689999999999999999999999999877655 23456788999999999999999984 57
Q ss_pred HHhhhcCcEEEEcCC-CChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEE
Q 018211 231 LAPLYAGATVEFMPK-FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMM 309 (359)
Q Consensus 231 ~~~l~~G~~i~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~ 309 (359)
+.+++.|+++++.+. +++..+++. ++++++|++.++|+++..+.+... ....++++||.++
T Consensus 238 ~~~l~~G~~~v~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~l~~lr~i~ 299 (541)
T 1v25_A 238 YAATLVGAKQVLPGPRLDPASLVEL----------FDGEGVTFTAGVPTVWLALADYLE--------STGHRLKTLRRLV 299 (541)
T ss_dssp HHHHHHTCEEEECTTCCSHHHHHHH----------HHHTTCCEEEECHHHHHHHHHHHH--------HHTCCCSSCCEEE
T ss_pred HHHHhcCceEEeeCCCCCHHHHHHH----------HHhcCeeEEecchHHHHHHHhhhh--------ccCCcchhccEEE
Confidence 788999999999874 799999998 888999999999999999987622 2234688999999
Q ss_pred ecCCCCCHHHHHHHHHHhCCcccccccCCcCcccccccc
Q 018211 310 CGSSALPLPVMQQWETITGHRLLERYGMTEGCTKGRHCW 348 (359)
Q Consensus 310 ~~G~~l~~~~~~~~~~~~~~~v~~~YG~TE~g~~~~~~~ 348 (359)
+||+++++++.++| +.+|+++++.||+||++++++.+.
T Consensus 300 ~gG~~l~~~~~~~~-~~~g~~~~~~YG~TE~~~~~~~~~ 337 (541)
T 1v25_A 300 VGGSAAPRSLIARF-ERMGVEVRQGYGLTETSPVVVQNF 337 (541)
T ss_dssp ECSSCCCHHHHHHH-HHTTCEEEEEEECGGGSSEEEECC
T ss_pred ECCCCCCHHHHHHH-HHhCCceeecccccccccceeccc
Confidence 99999999999999 668999999999999998766553
No 8
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=5e-47 Score=364.33 Aligned_cols=308 Identities=18% Similarity=0.239 Sum_probs=248.9
Q ss_pred ChHHHHHHHcCCCCCCceEEeeCC---------ccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeE
Q 018211 1 MEVFKAAYKKGSMARDSVAIRADQ---------KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARI 71 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~~~---------~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V 71 (359)
+++.+.|.++++.+|+++|+++.+ +++||+||.++++++|+.|.+ .|+ +||+|
T Consensus 24 ~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~-----------------~g~-~gd~V 85 (480)
T 3t5a_A 24 RSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSR-----------------CGS-TGDRV 85 (480)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTT-----------------SSC-TTCEE
T ss_pred ccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHh-----------------cCC-CCCEE
Confidence 578999999999999999999754 899999999999999999998 686 99999
Q ss_pred EEEcCCCHHHHHHHHHHHHhCCeeeecCC---CCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCC----ceeccC
Q 018211 72 GIVAKPSFEFVAGVLGTWFSGCIAVPLAL---SYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA----KFSLIP 144 (359)
Q Consensus 72 ~i~~~n~~~~~~~~lA~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~----~~~~~~ 144 (359)
+++++|++++++++|||+++|++++|+++ .++.+++.+++++++++++|++.+..+.+......... ....++
T Consensus 86 ~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (480)
T 3t5a_A 86 VISAPQGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVD 165 (480)
T ss_dssp EEECCSSHHHHHHHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGG
T ss_pred EEEcCCcHHHHHHHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEec
Confidence 99999999999999999999999999999 78899999999999999999999877766654332211 111111
Q ss_pred CCCCCCCcccccccchhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCC------CceEEEec
Q 018211 145 PVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTS------ADQFLHCL 218 (359)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~------~d~~l~~~ 218 (359)
.... ............++++++|+|||||||.||||+++|+++..++......++... +|++++.+
T Consensus 166 ~~~~--------~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~ 237 (480)
T 3t5a_A 166 LLDL--------DAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWL 237 (480)
T ss_dssp GSCT--------TCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECC
T ss_pred cccc--------ccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeC
Confidence 1100 011111233456789999999999999999999999999999988888888777 99999999
Q ss_pred CchhhHHHHHHHHHhhhcCcEEEEcCCC----ChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHH
Q 018211 219 PLHHVHGLFNALLAPLYAGATVEFMPKF----SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTEL 294 (359)
Q Consensus 219 pl~h~~~~~~~~~~~l~~G~~i~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~ 294 (359)
|++|.+++...++.+++.|+++++.+.+ ++..+++. ++++++| +..+|+++..++......
T Consensus 238 pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~----------i~~~~~t-~~~~p~~~~~l~~~~~~~---- 302 (480)
T 3t5a_A 238 PFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHL----------MASDFHA-FSAAPNFAFELAARRTTD---- 302 (480)
T ss_dssp CTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHH----------TTSSSEE-EEEECHHHHHHHHHHCCT----
T ss_pred CCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHH----------HHhhcee-EeeChHHHHHHHHhhcCc----
Confidence 9999999877889999999999999754 88899988 9999999 889999988887642111
Q ss_pred HHHHHhhhccceEEEecCCCCCHHHHHHHHHHhC------CcccccccCCcCccccccccc
Q 018211 295 QAASASAAKQLRLMMCGSSALPLPVMQQWETITG------HRLLERYGMTEGCTKGRHCWQ 349 (359)
Q Consensus 295 ~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~------~~v~~~YG~TE~g~~~~~~~~ 349 (359)
......++++||.+++||+++++++.++|.+.++ .++++.||+||++++++....
T Consensus 303 ~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~ 363 (480)
T 3t5a_A 303 DDMAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKP 363 (480)
T ss_dssp GGGTTCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCT
T ss_pred ccccccchhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEeeccc
Confidence 1223457899999999999999999999999984 379999999999987776554
No 9
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=1.5e-47 Score=371.00 Aligned_cols=302 Identities=18% Similarity=0.243 Sum_probs=249.8
Q ss_pred ChHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHH
Q 018211 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~ 80 (359)
||+.+.|.++++.+|+++|+++.++++||+||.++++++|..|.+ .|+++||+|+++++|+++
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~~~~~Ty~el~~~~~~lA~~L~~-----------------~g~~~gd~V~i~~~n~~e 63 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWRDAKITYKQLKEDSDALAHWISS-----------------EYPDDRSPIMVYGHMQPE 63 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHH-----------------HSTTCCCCEEEEESSCHH
T ss_pred CcHHHHHHHHHHHCCCceEEEeCCceEEHHHHHHHHHHHHHHHHH-----------------hCCCCCCEEEEEeCCCHH
Confidence 899999999999999999999999999999999999999999999 799999999999999999
Q ss_pred HHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCCCCCCcccccccch
Q 018211 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQ 160 (359)
Q Consensus 81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
+++++|||+++|++++|+++.++.+++.++++++++++++++..... ........... .............
T Consensus 64 ~~~~~la~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~------~~~~~~~~~~~---~~~~~~~~~~~~~ 134 (512)
T 3fce_A 64 MIINFLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTV------TDLPVRIVSED---NLKDIFFTHKGNT 134 (512)
T ss_dssp HHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCS------SCCSSEEEETH---HHHHHHHHTTTCC
T ss_pred HHHHHHHHHHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCcccc------cccccceechh---hhhhhcccccccC
Confidence 99999999999999999999999999999999999999998753210 00000000000 0000000000001
Q ss_pred hhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHHHHHHhhhcCcEE
Q 018211 161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATV 240 (359)
Q Consensus 161 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i 240 (359)
........++++++|+|||||||.||||+++|+++.+.+......+++.++|++++.+|++|..++. .++.+++.|+++
T Consensus 135 ~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~ 213 (512)
T 3fce_A 135 PNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVM-DIYPSLVTGGTL 213 (512)
T ss_dssp CCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHH-HHHHHHHTTCEE
T ss_pred CCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHH-HHHHHHhCCCEE
Confidence 1122345678999999999999999999999999999999888899999999999999999999985 588999999999
Q ss_pred EEcCC---CChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCCH
Q 018211 241 EFMPK---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPL 317 (359)
Q Consensus 241 ~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~ 317 (359)
++.+. +++..+++. ++++++|++.++|+++..++.... ....+++++|.+++||+++++
T Consensus 214 ~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~~~~lr~~~~~G~~l~~ 275 (512)
T 3fce_A 214 WAIDKDMIARPKDLFAS----------LEQSDIQVWTSTPSFAEMCLMEAS--------FSESMLPNMKTFLFCGEVLPN 275 (512)
T ss_dssp EECCHHHHHSHHHHHHH----------HHHHCCCEEEECHHHHHHHTTSTT--------CSTTTSTTCCEEEECSSCCCH
T ss_pred EECCHHHhhCHHHHHHH----------HHHcCCcEEEecHHHHHHHHhhcc--------ccchhCccccEEEEecCcCCH
Confidence 99986 688999998 788999999999999999887532 223568899999999999999
Q ss_pred HHHHHHHHHh-CCcccccccCCcCccccccc
Q 018211 318 PVMQQWETIT-GHRLLERYGMTEGCTKGRHC 347 (359)
Q Consensus 318 ~~~~~~~~~~-~~~v~~~YG~TE~g~~~~~~ 347 (359)
++.++|.+.+ ++++++.||+||++++++..
T Consensus 276 ~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~ 306 (512)
T 3fce_A 276 EVARKLIERFPKATIMNTYGPTEATVAVTGI 306 (512)
T ss_dssp HHHHHHHHHCTTCEEEEEECCGGGSSCSEEE
T ss_pred HHHHHHHHHCCCCEEEeCcccChhhhheeeE
Confidence 9999999998 89999999999999876643
No 10
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=4.7e-47 Score=370.40 Aligned_cols=313 Identities=20% Similarity=0.218 Sum_probs=253.7
Q ss_pred ChHHHHHHHcCCCCCCceEEe---e--CCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEc
Q 018211 1 MEVFKAAYKKGSMARDSVAIR---A--DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~---~--~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~ 75 (359)
+|+.+.|.++++.+|+++|++ + .++++||+||.++++++|..|.+ +|+++||+|++++
T Consensus 20 ~tl~~~l~~~a~~~p~~~a~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~-----------------~Gv~~gd~V~i~~ 82 (550)
T 3rix_A 20 GTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKR-----------------YGLNTNHRIVVCS 82 (550)
T ss_dssp SCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-----------------HTCCTTCEEEEEC
T ss_pred CCHHHHHHHHHHhCCCCceEEEeeecCCCcEeEHHHHHHHHHHHHHHHHH-----------------hCCCCCCEEEEEc
Confidence 478899999999999999976 3 46899999999999999999999 7999999999999
Q ss_pred CCCHHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCC--ceeccCCCCCCCCcc
Q 018211 76 KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA--KFSLIPPVPNVSSET 153 (359)
Q Consensus 76 ~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 153 (359)
+|++++++++|||+++|++++|+++.++.+++.+++++++++++|++.+..+.+.......+. ..+.++.........
T Consensus 83 ~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (550)
T 3rix_A 83 ENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQ 162 (550)
T ss_dssp SSCTTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCBTTBC
T ss_pred CCcccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcCCccccCcc
Confidence 999999999999999999999999999999999999999999999999888777766555432 222222211111110
Q ss_pred cccccc-----------hhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHh---hccCCCceEEEecC
Q 018211 154 TVFDQS-----------QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA---WEYTSADQFLHCLP 219 (359)
Q Consensus 154 ~~~~~~-----------~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~d~~l~~~p 219 (359)
...... ...+.....++++++|+|||||||.||||+++|+++...+...... +++.++|++++.+|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p 242 (550)
T 3rix_A 163 SMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVP 242 (550)
T ss_dssp BHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSC
T ss_pred cHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEech
Confidence 000000 0011112235789999999999999999999999999887766554 46778999999999
Q ss_pred chhhHHHHHHHHHhhhcCcEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHH
Q 018211 220 LHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASA 299 (359)
Q Consensus 220 l~h~~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~ 299 (359)
++|.++++ .++.+++.|+++++.+.+++..+++. ++++++|++.++|+++..+.+... ...
T Consensus 243 ~~~~~g~~-~~~~~l~~G~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~ 303 (550)
T 3rix_A 243 FHHGFGMF-TTLGYLICGFRVVLMYRFEEELFLRS----------LQDYKIQSALLVPTLFSFFAKSTL--------IDK 303 (550)
T ss_dssp TTSHHHHH-HHHHHHHHTCEEEECSSCCHHHHHHH----------HHHTTCSEEEECHHHHHHHHHCCG--------GGG
T ss_pred HHHHHHHH-HHHHHHHcCCEEEEeCCCCHHHHHHH----------HHHcCCeEEEeCcHHHHHHHhCcc--------ccc
Confidence 99999985 57888999999999999999999999 888999999999999999987632 233
Q ss_pred hhhccceEEEecCCCCCHHHHHHHHHHhCCc-ccccccCCcCccccccccc
Q 018211 300 SAAKQLRLMMCGSSALPLPVMQQWETITGHR-LLERYGMTEGCTKGRHCWQ 349 (359)
Q Consensus 300 ~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~-v~~~YG~TE~g~~~~~~~~ 349 (359)
.++++||.+++||+++++++.++|.+.++.. +++.||+||++++++....
T Consensus 304 ~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~ 354 (550)
T 3rix_A 304 YDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPE 354 (550)
T ss_dssp SCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCT
T ss_pred cCcccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceecCCC
Confidence 5688999999999999999999999999875 9999999999987766544
No 11
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=2.1e-46 Score=367.51 Aligned_cols=310 Identities=17% Similarity=0.220 Sum_probs=253.9
Q ss_pred hHH-HHHHHcCCCCCCceEEee-----CCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEc
Q 018211 2 EVF-KAAYKKGSMARDSVAIRA-----DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75 (359)
Q Consensus 2 ~i~-~~l~~~a~~~p~~~ai~~-----~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~ 75 (359)
|+. +.|.++|+.+|+++|+++ .++++||+||.++++++|+.|.+ +|+++||+|++++
T Consensus 56 n~~~~~l~~~a~~~pd~~Al~~~~~~g~~~~~Ty~eL~~~~~~~A~~L~~-----------------~Gv~~Gd~V~l~~ 118 (580)
T 3etc_A 56 NFAYDVVDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVK-----------------HGIGKGDYVMLTL 118 (580)
T ss_dssp CHHHHTHHHHHHHCTTCEEEEEEESSSCEEEEEHHHHHHHHHHHHHHHHH-----------------TTCCTTCEEEEEC
T ss_pred hHHHHHHHHHHhhCCCCEEEEEEcCCCCEeEEeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEc
Confidence 444 889999999999999996 24799999999999999999999 7999999999999
Q ss_pred CCCHHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccH--HHHHHHhhhcC---CceeccCCCCCCC
Q 018211 76 KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR--EVLQNVASKSG---AKFSLIPPVPNVS 150 (359)
Q Consensus 76 ~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~--~~~~~~~~~~~---~~~~~~~~~~~~~ 150 (359)
+|++++++++|||+++|++++|+++.++.+++.+++++++++++|++.+.. +.+.......+ .....+... ...
T Consensus 119 ~~~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 197 (580)
T 3etc_A 119 KSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGD-VLE 197 (580)
T ss_dssp TTCTHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSS-CCT
T ss_pred CCCHHHHHHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCc-ccc
Confidence 999999999999999999999999999999999999999999999987654 55554443332 222222211 011
Q ss_pred Ccccccccc----h----hhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchh
Q 018211 151 SETTVFDQS----Q----AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHH 222 (359)
Q Consensus 151 ~~~~~~~~~----~----~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h 222 (359)
......+.. . ........++|+++|+|||||||.||||.++|.+++..+.......++.+++++++..|++|
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (580)
T 3etc_A 198 GWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGW 277 (580)
T ss_dssp TCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECCCTTS
T ss_pred ccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEeCChHH
Confidence 111110000 0 00012456789999999999999999999999999888776666678889999999999999
Q ss_pred hHHHHHHHHHhhhcCcEEEEc--CCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHh
Q 018211 223 VHGLFNALLAPLYAGATVEFM--PKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASAS 300 (359)
Q Consensus 223 ~~~~~~~~~~~l~~G~~i~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~ 300 (359)
..+.+..++.++..|+++++. ..+++..+++. ++++++|+++++|++++.+.+. .....
T Consensus 278 ~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l~~~---------~~~~~ 338 (580)
T 3etc_A 278 GKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEK----------ASKYGVTTFCAPPTIYRFLIKE---------DLSHY 338 (580)
T ss_dssp THHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHH----------HHHHTCCEEEECHHHHHHHHTS---------CC---
T ss_pred HHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH----------HHHHCCeEEEccHHHHHHHHhc---------ccccC
Confidence 999877788899999999988 57899999999 8889999999999999999875 12345
Q ss_pred hhccceEEEecCCCCCHHHHHHHHHHhCCcccccccCCcCcccccccc
Q 018211 301 AAKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEGCTKGRHCW 348 (359)
Q Consensus 301 ~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~TE~g~~~~~~~ 348 (359)
++++||.+++||+++++++.++|.+.+|+++++.||+||+++.++..+
T Consensus 339 ~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~ 386 (580)
T 3etc_A 339 NFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATFP 386 (580)
T ss_dssp CCTTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEECCT
T ss_pred CCccceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceeecCC
Confidence 689999999999999999999999999999999999999987766544
No 12
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=1.5e-46 Score=363.11 Aligned_cols=302 Identities=20% Similarity=0.259 Sum_probs=247.2
Q ss_pred ChHHHHHHHcCCCCCCceEEeeC--CccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCC
Q 018211 1 MEVFKAAYKKGSMARDSVAIRAD--QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS 78 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~~--~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~ 78 (359)
||+.+.|.++++.+|+++|+.+. ++++||+||.++++++|..|.+ +|+++||+|+++++|+
T Consensus 2 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~-----------------~Gv~~gd~V~i~~~~~ 64 (504)
T 1t5h_X 2 QTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHA-----------------DGLRPQQRVAVVAPNS 64 (504)
T ss_dssp CCHHHHHHHHHHHCTTSEEEEETTTTEEEEHHHHHHHHHHHHHHHHH-----------------TTCCTTCEEEEECCSC
T ss_pred CcHHHHHHHHHHhCCCceEEEEcCCCceeEHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcCCC
Confidence 57899999999999999999987 7899999999999999999999 6999999999999999
Q ss_pred HHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEe--ccccHHHH-HHHhhhcCCceeccCCCCCCCCcccc
Q 018211 79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLS--TEDYREVL-QNVASKSGAKFSLIPPVPNVSSETTV 155 (359)
Q Consensus 79 ~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (359)
+++++++|||+++|++++|+++.++.+++.+++++++++++++ +....+.+ ... .......+..... .....
T Consensus 65 ~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~--~~~~~ 139 (504)
T 1t5h_X 65 ADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSG---SGARIIFLGDLVR--DGEPY 139 (504)
T ss_dssp HHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHC---CCCEEEEGGGTEE--TTEEC
T ss_pred HHHHHHHHHHHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhcc---ccceeEEecchhh--cCccc
Confidence 9999999999999999999999999999999999999999999 76654443 221 1111111110000 00000
Q ss_pred cccchhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhcc--CCCceEEEecCchhhHHHHHHHHHh
Q 018211 156 FDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEY--TSADQFLHCLPLHHVHGLFNALLAP 233 (359)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~--~~~d~~l~~~pl~h~~~~~~~~~~~ 233 (359)
............++++++|+|||||||.||||.++|+++...+......+++ .++|++++.+|++|..++...++.+
T Consensus 140 -~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~ 218 (504)
T 1t5h_X 140 -SYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAA 218 (504)
T ss_dssp -CCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHH
T ss_pred -ccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHHHHHHHH
Confidence 0000011134467899999999999999999999999999988888888888 7899999999999999986668889
Q ss_pred hhcCcEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCC
Q 018211 234 LYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSS 313 (359)
Q Consensus 234 l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~ 313 (359)
+..|+++++.+.+++..+++. ++++++|++.++|++++.+.+..... ....++++||.+++||+
T Consensus 219 l~~G~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~~------~~~~~l~~lr~~~~gG~ 282 (504)
T 1t5h_X 219 LALDGTYVVVEEFRPVDALQL----------VQQEQVTSLFATPTHLDALAAAAAHA------GSSLKLDSLRHVTFAGA 282 (504)
T ss_dssp HHTTCEEEECSSCCHHHHHHH----------HHHHTCCEEECCHHHHHHHHHHHCCT------TCCCCCTTCCEEEECCT
T ss_pred HHcCceEEeCCCCCHHHHHHH----------HHHhCCeEEEeChHHHHHHHhhhccc------cccccCccccEEEEcCC
Confidence 999999999999999999998 78899999999999999998753110 11235789999999999
Q ss_pred CCCHHHHHHHHHHhCCcccccccCCcCc
Q 018211 314 ALPLPVMQQWETITGHRLLERYGMTEGC 341 (359)
Q Consensus 314 ~l~~~~~~~~~~~~~~~v~~~YG~TE~g 341 (359)
++++++.++|.+.++.++++.||+||++
T Consensus 283 ~l~~~~~~~~~~~~~~~~~~~YG~TE~~ 310 (504)
T 1t5h_X 283 TMPDAVLETVHQHLPGEKVNIYGTTEAM 310 (504)
T ss_dssp TCCHHHHHHHHHHCCSEEEEEEEETTTE
T ss_pred cCCHHHHHHHHHhcCcceeeeecccccc
Confidence 9999999999999999999999999994
No 13
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=4.2e-46 Score=360.48 Aligned_cols=307 Identities=19% Similarity=0.248 Sum_probs=251.7
Q ss_pred ChHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHH
Q 018211 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~ 80 (359)
+|+.+.|.++++.+|+++|++++++++||+||.++++++|..|.+ +|+++||+|+++++|+++
T Consensus 6 ~tl~~~l~~~a~~~pd~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~-----------------~Gv~~gd~V~i~~~~~~~ 68 (509)
T 3ivr_A 6 FTLADVYRRNAALFPDRTAFMVDGVRLTHRDYLARAERLASGLLR-----------------DGVHTGDRVAILSQNCSE 68 (509)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHH-----------------TTCCTTCEEEEECCSCHH
T ss_pred CCHHHHHHHHHHHCCCceEEEECCcEEcHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcCCCHH
Confidence 578999999999999999999999999999999999999999999 699999999999999999
Q ss_pred HHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCC-ceeccCCCCCCCCcccccc--
Q 018211 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGA-KFSLIPPVPNVSSETTVFD-- 157 (359)
Q Consensus 81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-- 157 (359)
+++++|||+++|++++|+++.++.+++.+++++++++++|++.+..+.+......... ...+.... ..........
T Consensus 69 ~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 147 (509)
T 3ivr_A 69 MIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGD-GSGPFAPFKDLA 147 (509)
T ss_dssp HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSC-CCSSCEEGGGTC
T ss_pred HHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCC-CCcChhhHhhcc
Confidence 9999999999999999999999999999999999999999999887764444333322 11111111 1111111111
Q ss_pred cchhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHHHHHHhhhcC
Q 018211 158 QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAG 237 (359)
Q Consensus 158 ~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G 237 (359)
...........++|+++|+|||||||.||||.++|+++...+......++++++|++++.+|++|.+++.. ++.++..|
T Consensus 148 ~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~-~~~~~~~~ 226 (509)
T 3ivr_A 148 SDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGL-MLTLQQAG 226 (509)
T ss_dssp CCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHH-HHHHHHHT
T ss_pred CCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHH-HHHHHHhC
Confidence 11112233456789999999999999999999999999999999889999999999999999999999965 44444555
Q ss_pred cEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCCH
Q 018211 238 ATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPL 317 (359)
Q Consensus 238 ~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~ 317 (359)
++.++...+++..+++. ++++++|++.++|+++..+++.. ...+++++|.+..+|++
T Consensus 227 g~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~p~~~~~l~~~~----------~~~~l~~lr~~~~~g~~--- 283 (509)
T 3ivr_A 227 GASVIAAKFDPAQAARD----------IEAHKVTVMAEFAPMLGNILDQA----------APAQLASLRAVTGLDTP--- 283 (509)
T ss_dssp CEEEECSSCCHHHHHHH----------HHHHTCCEEEEETTHHHHHHHHC----------CGGGGTTCCEEEEECCH---
T ss_pred CcEEEecccCHHHHHHH----------HHHHCCcEEEecHHHHHHHHhcc----------cccchhhhheecccCCh---
Confidence 55555558899999999 88899999999999999998763 23467899999999987
Q ss_pred HHHHHHHHHh-CCcccccccCCcCccccccccc
Q 018211 318 PVMQQWETIT-GHRLLERYGMTEGCTKGRHCWQ 349 (359)
Q Consensus 318 ~~~~~~~~~~-~~~v~~~YG~TE~g~~~~~~~~ 349 (359)
++.+.+.+.+ ++++++.||+||++++++....
T Consensus 284 ~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~ 316 (509)
T 3ivr_A 284 ETIERFEATCPNATFWATFGQSETSGLSTFAPY 316 (509)
T ss_dssp HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEG
T ss_pred HHHHHHHHhcCCCeEEcccCccccccccccCcc
Confidence 8889999888 9999999999999987665543
No 14
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=4.7e-46 Score=363.04 Aligned_cols=309 Identities=20% Similarity=0.234 Sum_probs=254.0
Q ss_pred hHHH-HHHHcCCCCCCceEEee--CCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCC
Q 018211 2 EVFK-AAYKKGSMARDSVAIRA--DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS 78 (359)
Q Consensus 2 ~i~~-~l~~~a~~~p~~~ai~~--~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~ 78 (359)
|+.+ .|.++++.+ +++|+++ .++++||+||.++++++|..|.+ +|+++||+|+++++|+
T Consensus 26 ~l~~~~l~~~~~~~-~~~A~~~~~~~~~~Ty~el~~~~~~lA~~L~~-----------------~Gv~~gd~V~i~~~n~ 87 (548)
T 2d1s_A 26 GTQLRKYMERYAKL-GAIAFTNAVTGVDYSYAEYLEKSCCLGKALQN-----------------YGLVVDGRIALCSENC 87 (548)
T ss_dssp HHHHHHHHHHHHHH-TCEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-----------------HTCCTTCEEEEECSSC
T ss_pred cHHHHHHHhhhccc-CCceEEEcCCCCEeeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEeCCc
Confidence 6778 888888889 9999997 57899999999999999999999 7999999999999999
Q ss_pred HHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcC--CceeccCCCCC---CCCcc
Q 018211 79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG--AKFSLIPPVPN---VSSET 153 (359)
Q Consensus 79 ~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~ 153 (359)
+++++++|||+++|++++|+++.++.+++.+++++++++++|++.+..+.+.......+ ..+..+..... .....
T Consensus 88 ~e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (548)
T 2d1s_A 88 EEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLD 167 (548)
T ss_dssp TTTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCSSCBTTBCBHH
T ss_pred hhHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCcccccccccHH
Confidence 99999999999999999999999999999999999999999999987776665543332 12222221100 00001
Q ss_pred cccccc-hh-hhcCCC------CCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHh---hccCCCceEEEecCchh
Q 018211 154 TVFDQS-QA-EKMDGQ------RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA---WEYTSADQFLHCLPLHH 222 (359)
Q Consensus 154 ~~~~~~-~~-~~~~~~------~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h 222 (359)
...... .. ...... .++++++|+|||||||.||||.++|+++...+...... +++.++|++++.+|++|
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h 247 (548)
T 2d1s_A 168 TFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHH 247 (548)
T ss_dssp HHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTS
T ss_pred HHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHH
Confidence 110000 00 000111 23899999999999999999999999999988777666 67889999999999999
Q ss_pred hHHHHHHHHHhhhcCcEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhh
Q 018211 223 VHGLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAA 302 (359)
Q Consensus 223 ~~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~ 302 (359)
.+++...++.++ .|+++++.+.++++.+++. ++++++|++.++|+++..+.+... ....++
T Consensus 248 ~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~l 308 (548)
T 2d1s_A 248 GFGMFTTLGYLI-CGFRVVMLTKFDEETFLKT----------LQDYKCTSVILVPTLFAILNKSEL--------LNKYDL 308 (548)
T ss_dssp HHHHHHHHHHHH-TTCEEEECCCCCHHHHHHH----------HHHTTEEEEEECHHHHHHHHHCSC--------GGGSCC
T ss_pred HHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHH----------HHHcCCcEEEecHHHHHHHHhCcc--------cccccc
Confidence 999976567777 9999999999999999999 888999999999999999987532 123467
Q ss_pred ccceEEEecCCCCCHHHHHHHHHHh-CCcccccccCCcCccccccc
Q 018211 303 KQLRLMMCGSSALPLPVMQQWETIT-GHRLLERYGMTEGCTKGRHC 347 (359)
Q Consensus 303 ~~l~~i~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~TE~g~~~~~~ 347 (359)
++||.+++||+++++++.++|.+.+ +.++++.||+||++++++..
T Consensus 309 ~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~ 354 (548)
T 2d1s_A 309 SNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIIT 354 (548)
T ss_dssp TTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEEC
T ss_pred cceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeeec
Confidence 8999999999999999999999999 78999999999999876554
No 15
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=1.1e-45 Score=367.13 Aligned_cols=313 Identities=18% Similarity=0.208 Sum_probs=250.4
Q ss_pred HHHHHHHcCCCCCCceEEee------CCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcC
Q 018211 3 VFKAAYKKGSMARDSVAIRA------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAK 76 (359)
Q Consensus 3 i~~~l~~~a~~~p~~~ai~~------~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~ 76 (359)
+.+.|.++++.+|+++|+++ .++++||+||.++++++|+.|++ +|+++||+|+++++
T Consensus 78 ~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~-----------------~Gv~~Gd~V~i~~~ 140 (652)
T 1pg4_A 78 AANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLD-----------------LGIKKGDVVAIYMP 140 (652)
T ss_dssp HHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHH-----------------HTCCTTCEEEEECC
T ss_pred HHHHHHHHhccCCCceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEeC
Confidence 45667788888999999997 34789999999999999999999 79999999999999
Q ss_pred CCHHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEecccc---------HHHHHHHhhhcC----Cceecc
Q 018211 77 PSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY---------REVLQNVASKSG----AKFSLI 143 (359)
Q Consensus 77 n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~----~~~~~~ 143 (359)
|++++++++|||+++|++++|+++.++.+++.+++++++++++|++... .+.+.+.....+ ..++.+
T Consensus 141 ~~~e~vva~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~ 220 (652)
T 1pg4_A 141 MVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVL 220 (652)
T ss_dssp SSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEE
T ss_pred CCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEE
Confidence 9999999999999999999999999999999999999999999997643 233333332221 122222
Q ss_pred CCCCCCC---Cc-----cccccc-chhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHH-HHHHhhccCCCce
Q 018211 144 PPVPNVS---SE-----TTVFDQ-SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQ-MLTEAWEYTSADQ 213 (359)
Q Consensus 144 ~~~~~~~---~~-----~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~-~~~~~~~~~~~d~ 213 (359)
....... .. .+.... ..........++++++|+|||||||.||||+++|++++.... .....+++.++|+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~ 300 (652)
T 1pg4_A 221 KRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDI 300 (652)
T ss_dssp CSSCCCCCCCBTTEEEHHHHHTTSCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCE
T ss_pred eCCCCcccccCCCceeHHHHHhhcCCCCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCE
Confidence 2111000 00 000000 000112234568999999999999999999999999887664 4455688999999
Q ss_pred EEEecCchhhHHHHHHHHHhhhcCcEEEEcCC----CChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhh
Q 018211 214 FLHCLPLHHVHGLFNALLAPLYAGATVEFMPK----FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEA 289 (359)
Q Consensus 214 ~l~~~pl~h~~~~~~~~~~~l~~G~~i~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~ 289 (359)
+++..|++|+.++.+.++.+|+.|+++++.+. +++..+++. ++++++|+++++|++++.+.+....
T Consensus 301 ~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l~~~~~~ 370 (652)
T 1pg4_A 301 YWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQV----------VDKHQVNILYTAPTAIRALMAEGDK 370 (652)
T ss_dssp EEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHH----------HHHHTCSEEEECHHHHHHHHTTGGG
T ss_pred EEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHH----------HHHhCCeEEEeCHHHHHHHHhcCcc
Confidence 99999999999986678899999999999875 588999999 8889999999999999999876321
Q ss_pred hhHHHHHHHHhhhccceEEEecCCCCCHHHHHHHHHHhC---CcccccccCCcCcccccccc
Q 018211 290 MDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITG---HRLLERYGMTEGCTKGRHCW 348 (359)
Q Consensus 290 ~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~---~~v~~~YG~TE~g~~~~~~~ 348 (359)
.....++++||.+++||+++++++.++|.+.+| +++++.||+||++++++...
T Consensus 371 ------~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~ 426 (652)
T 1pg4_A 371 ------AIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPL 426 (652)
T ss_dssp ------GTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCC
T ss_pred ------ccccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCcccccceecCC
Confidence 112346899999999999999999999999888 89999999999998766543
No 16
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=3.9e-46 Score=360.88 Aligned_cols=300 Identities=17% Similarity=0.277 Sum_probs=253.2
Q ss_pred ChHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHH
Q 018211 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~ 80 (359)
||+.+.|.++++.+|+++|+++.++++||+||.++++++|..|.+. .|.++|++|+++++|+++
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~~A~~L~~~----------------~~~~~g~~V~i~~~n~~~ 64 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQGQSLTYQELWEQSDRAAAAIQKR----------------ISGEKKSPILVYGHMEPH 64 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHTTT----------------SCSSSCCCEEEEESSCHH
T ss_pred CcHHHHHHHHHHHCCCCeEEEcCCceeeHHHHHHHHHHHHHHHHHh----------------cCCCCCCeEEEEecCCHH
Confidence 8999999999999999999999999999999999999999999884 478899999999999999
Q ss_pred HHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCCCCCCcccccc--c
Q 018211 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFD--Q 158 (359)
Q Consensus 81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 158 (359)
+++++|||+++|++++|+++.++.+++.+++++++++++|++..... .........+ ....... .
T Consensus 65 ~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~------~~~~~~~~~~-------~~~~~~~~~~ 131 (511)
T 3e7w_A 65 MIVSFLGSVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSI------DAVGQQIQTV-------SAEELLENEG 131 (511)
T ss_dssp HHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCT------TCCCCSSCEE-------EHHHHHTSCS
T ss_pred HHHHHHHHHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccc------hhccccccee-------cHhhhhcccc
Confidence 99999999999999999999999999999999999999998653210 0000000000 0000000 0
Q ss_pred chhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHHHHHHhhhcCc
Q 018211 159 SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGA 238 (359)
Q Consensus 159 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~ 238 (359)
..........++++++|+|||||||.||||+++|+++...+......+++.++|++++.+|++|..+++ .++.+++.|+
T Consensus 132 ~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~ 210 (511)
T 3e7w_A 132 GSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVM-DLYPCLQSGG 210 (511)
T ss_dssp CCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHH-HHHHHHHTTC
T ss_pred CCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHH-HHHHHHhcCC
Confidence 001112234568999999999999999999999999999999888889999999999999999999985 6889999999
Q ss_pred EEEEcCC---CChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCC
Q 018211 239 TVEFMPK---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSAL 315 (359)
Q Consensus 239 ~i~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l 315 (359)
++++.+. +++..+++. ++++++|++.++|+++..++.... ....+++++|.+++||+++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~~~~l~~~~~~G~~l 272 (511)
T 3e7w_A 211 TLHCVTKDAVNKPKVLFEE----------LKKSGLNVWTSTPSFVQMCLMDPG--------FSQDLLPHADTFMFCGEVL 272 (511)
T ss_dssp EEEECCHHHHHSHHHHHHH----------HHHHCCSEEEECHHHHHHHHTSTT--------CSTTTCTTCCEEEECSSCC
T ss_pred EEEEcChhhhcCHHHHHHH----------HHHcCCcEEEecHHHHHHHHhccc--------cccccCCcccEEEEecCCC
Confidence 9999986 688889988 788999999999999999987632 2234678999999999999
Q ss_pred CHHHHHHHHHHh-CCcccccccCCcCcccccccc
Q 018211 316 PLPVMQQWETIT-GHRLLERYGMTEGCTKGRHCW 348 (359)
Q Consensus 316 ~~~~~~~~~~~~-~~~v~~~YG~TE~g~~~~~~~ 348 (359)
++++.+++.+.+ ++++++.||+||+++.++.+.
T Consensus 273 ~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~ 306 (511)
T 3e7w_A 273 PVSVAKALLERFPKAKIFNTYGPTEATVAVTSVE 306 (511)
T ss_dssp CHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEE
T ss_pred CHHHHHHHHHHCCCcEEEeCcccchheeeeeEEe
Confidence 999999999999 899999999999998766543
No 17
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=1.1e-45 Score=359.26 Aligned_cols=309 Identities=22% Similarity=0.281 Sum_probs=244.8
Q ss_pred HHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHHHH
Q 018211 3 VFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFV 82 (359)
Q Consensus 3 i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~~~ 82 (359)
+.+.|.++++ +|+++|+++.++++||+||.++++++|..|.+ +|+++||+|+++++|+++++
T Consensus 26 ~~~~l~~~~~-~p~~~A~~~~~~~~Ty~el~~~~~~lA~~L~~-----------------~Gv~~gd~V~i~~~n~~~~~ 87 (529)
T 2v7b_A 26 AAYLFRLNET-RAGKTAYIDDTGSTTYGELEERARRFASALRT-----------------LGVHPEERILLVMLDTVALP 87 (529)
T ss_dssp HHHHHHHTGG-GTTSEEEECSSCEEEHHHHHHHHHHHHHHHHH-----------------TTCCTTCEEEEECCSSTHHH
T ss_pred HHHHHHhhhc-cCCceEEEeCCCCccHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcCCcHHHH
Confidence 5677888888 99999999988999999999999999999999 69999999999999999999
Q ss_pred HHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcC---CceeccCCCCC----CCCcccc
Q 018211 83 AGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG---AKFSLIPPVPN----VSSETTV 155 (359)
Q Consensus 83 ~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~---~~~~~~~~~~~----~~~~~~~ 155 (359)
+++|||+++|++++|+++.++.+++.+++++++++++|++.+..+.+........ ..+........ .......
T Consensus 88 ~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (529)
T 2v7b_A 88 VAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESEPRLAPLFEEL 167 (529)
T ss_dssp HHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC------CCCBHHHH
T ss_pred HHHHHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEecccccccccccchhhh
Confidence 9999999999999999999999999999999999999999887766655433211 11211111100 0000110
Q ss_pred cc-cchhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHH-HHHHHHHHHhhccCCCceEEEecCchhhHHHHHHHHHh
Q 018211 156 FD-QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSI-DAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAP 233 (359)
Q Consensus 156 ~~-~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l-~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~ 233 (359)
.. ...........++|+++|+|||||||.||||+++|+++ ..........+++.++|++++..|++|.+++...++.+
T Consensus 168 ~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~ 247 (529)
T 2v7b_A 168 IDAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFP 247 (529)
T ss_dssp HHTSCCCSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHHHTHHH
T ss_pred hccCCCcccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHHHHHHH
Confidence 00 00111122346789999999999999999999999999 55555445567888999999999999999997777889
Q ss_pred hhcCcEEEEc-CCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecC
Q 018211 234 LYAGATVEFM-PKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGS 312 (359)
Q Consensus 234 l~~G~~i~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G 312 (359)
+..|+++++. +.+++..+++. +.++++|++.++|+++..++....... ....++|.+++||
T Consensus 248 l~~G~~~v~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~~~--------~~~~~lr~~~~gG 309 (529)
T 2v7b_A 248 LSVGATAILMAERPTADAIFAR----------LVEHRPTVFYGVPTLYANMLVSPNLPA--------RADVAIRICTSAG 309 (529)
T ss_dssp HHHTCEEECCCSCCCHHHHHHH----------HHHSCCSEEEECHHHHHHHHTCTTCCC--------GGGCCCCEEEECS
T ss_pred HhcCcEEEEecCCCCHHHHHHH----------HHHhCCEEEEecHHHHHHHHhCccccc--------ccCCceEEEEEcC
Confidence 9999999988 67899999998 788999999999999999987532111 1123899999999
Q ss_pred CCCCHHHHHHHHHHhCCcccccccCCcCccccccc
Q 018211 313 SALPLPVMQQWETITGHRLLERYGMTEGCTKGRHC 347 (359)
Q Consensus 313 ~~l~~~~~~~~~~~~~~~v~~~YG~TE~g~~~~~~ 347 (359)
+++++++.++|.+.+|+++++.||+||++++++..
T Consensus 310 e~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~ 344 (529)
T 2v7b_A 310 EALPREIGERFTAHFGCEILDGIGSTEMLHIFLSN 344 (529)
T ss_dssp SCCCHHHHHHHHHHHSCCEEEEEECTTTSSEEEEC
T ss_pred CCCCHHHHHHHHHHhCCceeeeEchhhcCceeecc
Confidence 99999999999999999999999999997665444
No 18
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=3.5e-45 Score=361.71 Aligned_cols=311 Identities=17% Similarity=0.198 Sum_probs=254.3
Q ss_pred ChHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHH
Q 018211 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~ 80 (359)
+++.+.|.++++ |+++|++++++++||+||.++++++|..|.+ +|+++||+|+++++|+++
T Consensus 27 ~~l~~~~~~~a~--pd~~Av~~~~~~lTY~eL~~~a~~lA~~L~~-----------------~Gv~~gd~V~l~~~~s~~ 87 (617)
T 3rg2_A 27 LPLTDILTRHAA--SDSIAVIDGERQLSYRELNQAADNLACSLRR-----------------QGIKPGETALVQLGNVAE 87 (617)
T ss_dssp CCTTHHHHTTTT--CCSEEEEETTEEEEHHHHHHHHHHHHHHHHH-----------------TTCCTTCEEEEECCSSHH
T ss_pred CCHHHHHHHhhC--CCCeEEecCCceEeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEECCCcHH
Confidence 467888999887 9999999999999999999999999999999 699999999999999999
Q ss_pred HHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccH-----HHHHHHhhhcC-CceeccCCCCCCCCccc
Q 018211 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR-----EVLQNVASKSG-AKFSLIPPVPNVSSETT 154 (359)
Q Consensus 81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 154 (359)
+++++|||+++|++++|+++.++.+++.++++++++++++++.... ........... .................
T Consensus 88 ~vva~lA~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (617)
T 3rg2_A 88 LYITFFALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGEHNLQD 167 (617)
T ss_dssp HHHHHHHHHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCSTTBHHH
T ss_pred HHHHHHHHHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccccchhh
Confidence 9999999999999999999999999999999999999999987543 22222222211 11111111111000000
Q ss_pred cc-ccchhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHH-HHHH
Q 018211 155 VF-DQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFN-ALLA 232 (359)
Q Consensus 155 ~~-~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~-~~~~ 232 (359)
.. ............++++++|+|||||||.||||+++|+++.+.+......+++.++|++++.+|++|.+++.. .++.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~ 247 (617)
T 3rg2_A 168 AINHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLG 247 (617)
T ss_dssp HHHSCCSSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHH
T ss_pred hhcccccccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhhhhHHHHHH
Confidence 00 001111223445689999999999999999999999999999999889999999999999999999988754 5788
Q ss_pred hhhcCcEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecC
Q 018211 233 PLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGS 312 (359)
Q Consensus 233 ~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G 312 (359)
+++.|+++++.+.+++..+++. ++++++|++.++|+++..+.+..... ....++++||.+++||
T Consensus 248 ~l~~G~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~~------~~~~~l~~lr~i~~gG 311 (617)
T 3rg2_A 248 VFLAGGTVVLAADPSATLCFPL----------IEKHQVNVTALVPPAVSLWLQALIEG------ESRAQLASLKLLQVGG 311 (617)
T ss_dssp HHHHTCEEEECSSCCHHHHHHH----------HHHTTCCEEEECHHHHHHHHHHHHTT------CCTTTTTTCCEEEEES
T ss_pred HHHcCCEEEEeCCCCHHHHHHH----------HHHhCCcEEEcchHHHHHHHHhhhcc------cccccCCCccEEEEcC
Confidence 9999999999999999999888 78899999999999999998753211 1123678999999999
Q ss_pred CCCCHHHHHHHHHHhCCcccccccCCcCcccccc
Q 018211 313 SALPLPVMQQWETITGHRLLERYGMTEGCTKGRH 346 (359)
Q Consensus 313 ~~l~~~~~~~~~~~~~~~v~~~YG~TE~g~~~~~ 346 (359)
+++++++.++|.+.+|+++++.||+||++..++.
T Consensus 312 e~l~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~ 345 (617)
T 3rg2_A 312 ARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTR 345 (617)
T ss_dssp SCCCHHHHHHHHHHTCSEEEEEEEETTEEEEECC
T ss_pred CcCCHHHHHHHHHHhCCcEEEEeccCcceeeccc
Confidence 9999999999999999999999999999865544
No 19
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=3.7e-46 Score=360.26 Aligned_cols=304 Identities=22% Similarity=0.290 Sum_probs=246.1
Q ss_pred ChHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHH
Q 018211 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~ 80 (359)
||+.+.|.++++.+|+++|+++.++++||+||.++++++|..|.+ . +||+|+++++|+++
T Consensus 1 mtl~~~l~~~a~~~pd~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~-----------------~---~gd~V~i~~~n~~e 60 (501)
T 3ipl_A 1 MSLDFWLYKQAQQNGHHIAITDGQESYTYQNLYCEASLLAKRLKA-----------------Y---QQSRVGLYIDNSIQ 60 (501)
T ss_dssp --CCCHHHHHHHHHTTSEEEECSSCEEEHHHHHHHHHHHHHHHHT-----------------T---CCSEEEEECCSSHH
T ss_pred CCHHHHHHHHHHhcCCceEEEeCCcEEEHHHHHHHHHHHHHHHHH-----------------c---CCCEEEEEcCCCHH
Confidence 789999999999999999999999999999999999999999987 4 89999999999999
Q ss_pred HHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCC-CCC-------C---
Q 018211 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPP-VPN-------V--- 149 (359)
Q Consensus 81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------~--- 149 (359)
++++++||+++|++++|+++.++.+++.+++++++++++|++.+..................... ... .
T Consensus 61 ~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (501)
T 3ipl_A 61 SIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGLLDNTMGIQYD 140 (501)
T ss_dssp HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEETTC-----------------------
T ss_pred HHHHHHHHHHcCCEEEecCccCCHHHHHHHHHhcCCCEEEEccccccccccccccccceeeeeecccccccccccccccc
Confidence 99999999999999999999999999999999999999999875432211110000000000000 000 0
Q ss_pred CCccccc--ccchhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHH
Q 018211 150 SSETTVF--DQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLF 227 (359)
Q Consensus 150 ~~~~~~~--~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~ 227 (359)
....... ............++|+++|+|||||||.||||.++|+++...+......+++.++|++++.+|++|.+++.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~ 220 (501)
T 3ipl_A 141 TSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLS 220 (501)
T ss_dssp ---------CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHH
T ss_pred cchhhccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHH
Confidence 0000000 00111123345679999999999999999999999999999999988899999999999999999999996
Q ss_pred HHHHHhhhcCcEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceE
Q 018211 228 NALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRL 307 (359)
Q Consensus 228 ~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 307 (359)
. ++.+++.|+++++.+.++++.+++. ++++++|++.++|++++.+.+.... ...+||.
T Consensus 221 ~-~~~~l~~G~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~-----------~~~~lr~ 278 (501)
T 3ipl_A 221 V-LLRAVIEGFTVRIVDKFNAEQILTM----------IKNERITHISLVPQTLNWLMQQGLH-----------EPYNLQK 278 (501)
T ss_dssp H-HHHHHHHTCEEEECSSCCHHHHHHH----------HHHSCCCEEEECHHHHHHHHHHTCC-----------SCTTCCE
T ss_pred H-HHHHHHcCceEEeCCCCCHHHHHHH----------HHHcCCcEEEchHHHHHHHHhcCCC-----------CcCcccE
Confidence 4 8889999999999999999999999 8889999999999999999875321 1127999
Q ss_pred EEecCCCCCHHHHHHHHHHhCCcccccccCCcCccccccc
Q 018211 308 MMCGSSALPLPVMQQWETITGHRLLERYGMTEGCTKGRHC 347 (359)
Q Consensus 308 i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~TE~g~~~~~~ 347 (359)
+++||+++++++.+++.+ +|+++++.||+||+++.+...
T Consensus 279 i~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TE~~~~~~~~ 317 (501)
T 3ipl_A 279 ILLGGAKLSATMIETALQ-YNLPIYNSFGMTETCSQFLTA 317 (501)
T ss_dssp EEECSSCCCHHHHHHHHH-TTCCEEEEEEEGGGTEEEEEE
T ss_pred EEEeCCCCCHHHHHHHHH-hCCCEeccccccccccceeec
Confidence 999999999999999987 699999999999998755443
No 20
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=2e-45 Score=365.63 Aligned_cols=313 Identities=17% Similarity=0.232 Sum_probs=250.1
Q ss_pred HHHHHHHcCCCCCCceEEee------CCccccHHHHHHHHHHHHHHHh-hCCCCCccccccccccccccCCCCCeEEEEc
Q 018211 3 VFKAAYKKGSMARDSVAIRA------DQKSYSYDQLASSALRISSLLC-SNDLKTTSEKTKNENSAVLAGGCGARIGIVA 75 (359)
Q Consensus 3 i~~~l~~~a~~~p~~~ai~~------~~~~~Ty~el~~~~~~la~~L~-~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~ 75 (359)
+.+.|.++++.+|+++|+++ .++++||+||.++++++|+.|+ + +|+++||+|+|++
T Consensus 84 ~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~-----------------~Gv~~Gd~V~i~~ 146 (663)
T 1ry2_A 84 CYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYS-----------------MGVRKGDTVAVYM 146 (663)
T ss_dssp HHHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHT-----------------SCCCTTCEEEECC
T ss_pred HHHHHHHHhccCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHh-----------------cCCCCCCEEEEEc
Confidence 45777788888999999997 3478999999999999999998 7 7999999999999
Q ss_pred CCCHHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEecccc---------HHHHHHHhhhcCC--ceeccC
Q 018211 76 KPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDY---------REVLQNVASKSGA--KFSLIP 144 (359)
Q Consensus 76 ~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~~--~~~~~~ 144 (359)
+|++++++++|||+++|++++|+++.++.+++.+++++++++++|++... .+.+.+.....+. .++.+.
T Consensus 147 ~~~~e~v~a~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~ 226 (663)
T 1ry2_A 147 PMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYR 226 (663)
T ss_dssp CSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEEC
T ss_pred CCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEe
Confidence 99999999999999999999999999999999999999999999997653 2233333322221 122222
Q ss_pred CCC--CCC--Cc-----ccccc-cchhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHH-HHHHhhccCCCce
Q 018211 145 PVP--NVS--SE-----TTVFD-QSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQ-MLTEAWEYTSADQ 213 (359)
Q Consensus 145 ~~~--~~~--~~-----~~~~~-~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~-~~~~~~~~~~~d~ 213 (359)
... ... .. .+... ...........++++++|+|||||||.||||+++|.+++.... .....+++.++|+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~ 306 (663)
T 1ry2_A 227 KTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDV 306 (663)
T ss_dssp SSCCSSCCCCSSSEEEHHHHHTTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCE
T ss_pred cCCCCccccCCCccccHHHHHhhcCCCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcE
Confidence 111 000 00 00000 0000112234568999999999999999999999999887654 3455678999999
Q ss_pred EEEecCchhhHHHHHHHHHhhhcCcEEEEcCC----CChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhh
Q 018211 214 FLHCLPLHHVHGLFNALLAPLYAGATVEFMPK----FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEA 289 (359)
Q Consensus 214 ~l~~~pl~h~~~~~~~~~~~l~~G~~i~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~ 289 (359)
+++..|++|+.++.+.++.+|+.|+++++.+. +++..+++. ++++++|+++++|++++.+.+....
T Consensus 307 ~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~----------i~~~~vt~~~~~Ps~~~~l~~~~~~ 376 (663)
T 1ry2_A 307 FFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDI----------IDEHKVTQFYVAPTALRLLKRAGDS 376 (663)
T ss_dssp EEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHH----------HHHTTCSEEEECHHHHHHHTTSCTT
T ss_pred EEEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHH----------HHHcCCCEEEecHHHHHHHHhcCcc
Confidence 99999999999986678899999999999874 578899999 8889999999999999999875321
Q ss_pred hhHHHHHHHHhhhccceEEEecCCCCCHHHHHHHHHHhC---CcccccccCCcCcccccccc
Q 018211 290 MDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITG---HRLLERYGMTEGCTKGRHCW 348 (359)
Q Consensus 290 ~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~---~~v~~~YG~TE~g~~~~~~~ 348 (359)
. ....++++||.+++||+++++++.+++.+.+| +++++.||+||+++.++...
T Consensus 377 ~------~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~ 432 (663)
T 1ry2_A 377 Y------IENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPL 432 (663)
T ss_dssp S------SSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECC
T ss_pred c------cccCCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCeeeccC
Confidence 0 12346899999999999999999999999888 89999999999997666543
No 21
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=3.1e-45 Score=361.44 Aligned_cols=291 Identities=19% Similarity=0.197 Sum_probs=244.6
Q ss_pred hHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHHH
Q 018211 2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF 81 (359)
Q Consensus 2 ~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~~ 81 (359)
++.+.|.++++.+|+++|+++.++++||+||.++++++|..|.+ .|+++||+|+++++|++++
T Consensus 28 tl~~~~~~~a~~~Pd~~Av~~~~~~lTY~eL~~~a~~lA~~L~~-----------------~Gv~~g~~V~i~~~~s~~~ 90 (620)
T 4dg8_A 28 TVVARFSEMAALHPHREAIRDRFGSVDYRQLLDSAEQLSDYLLE-----------------HYPQPGVCLGVYGEYSRES 90 (620)
T ss_dssp CHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHH-----------------HCCSSCCEEEEESSSCHHH
T ss_pred CHHHHHHHHHHhCCCCeEEEcCCCcCcHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEeCCCHHH
Confidence 68899999999999999999999999999999999999999999 7999999999999999999
Q ss_pred HHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCCCCCCcccccccchh
Q 018211 82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA 161 (359)
Q Consensus 82 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (359)
++++||++++|++++|+++.++.+++.++++++++++++++........ ......+.. .......
T Consensus 91 vva~lailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~------~~~~~~~~~---------~~~~~~~ 155 (620)
T 4dg8_A 91 ITCLLAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPAN------GLPCVPVRH---------LPAAPAS 155 (620)
T ss_dssp HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCCT------TSCEEEGGG---------CCCCCCC
T ss_pred HHHHHHHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCccccccc------CCceeeecc---------CCcCCcc
Confidence 9999999999999999999999999999999999999996653211000 000000000 0001111
Q ss_pred hhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHHHHHHhhhcCcEEE
Q 018211 162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVE 241 (359)
Q Consensus 162 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~ 241 (359)
.......++++++|+|||||||.||||+++|+++.+.+.. ...+++.++|++++..|++|+.+++ .++.+|+.|++++
T Consensus 156 ~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~v 233 (620)
T 4dg8_A 156 VARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATL-EIWGALLNGGCCV 233 (620)
T ss_dssp SSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHH-HHHHHHTTTCEEE
T ss_pred ccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHH-HHHHHHhcCCEEE
Confidence 1122345789999999999999999999999999876654 4567888999999999999999986 5899999999999
Q ss_pred EcC--CCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCCHHH
Q 018211 242 FMP--KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPV 319 (359)
Q Consensus 242 ~~~--~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~ 319 (359)
+.+ .+++..+++. +.++++|++.++|++++.+.+. ...++++||.+++||+++++++
T Consensus 234 ~~~~~~~~~~~~~~~----------i~~~~vt~~~~~Ps~~~~l~~~-----------~~~~l~~lr~v~~gGe~l~~~~ 292 (620)
T 4dg8_A 234 LNDLGPLDPGVLRQL----------IGERGADSAWLTASLFNTLVDL-----------DPDCLGGLRQLLTGGDILSVPH 292 (620)
T ss_dssp ECCSSSCCHHHHHHH----------HHTTCCCEEEEEHHHHHHHHHH-----------CGGGGTTCSEEEEESSCCCHHH
T ss_pred eCccccCCHHHHHHH----------HHHhCCcEEEccHHHHHHHHhc-----------ChhhCCCccEEEEEeCcCCHHH
Confidence 964 5789999988 8899999999999999998753 1245789999999999999999
Q ss_pred HHHHHHHh-CCcccccccCCcCccccccc
Q 018211 320 MQQWETIT-GHRLLERYGMTEGCTKGRHC 347 (359)
Q Consensus 320 ~~~~~~~~-~~~v~~~YG~TE~g~~~~~~ 347 (359)
.+++.+.+ +++++|.||+||++++++..
T Consensus 293 ~~~~~~~~~~~~l~n~YG~TE~~~~~~~~ 321 (620)
T 4dg8_A 293 VRRALLRHPRLHLVNGYGPTENTTFTCCH 321 (620)
T ss_dssp HHHHHHHCTTCEEEEEECCGGGCSCSEEE
T ss_pred HHHHHHhCCCeEEEeeEchhhhhhheEEE
Confidence 99998876 89999999999999876543
No 22
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=2.7e-45 Score=380.09 Aligned_cols=312 Identities=20% Similarity=0.277 Sum_probs=261.4
Q ss_pred ChHHHHHHHcCCCCCCceEEeeC--CccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCC
Q 018211 1 MEVFKAAYKKGSMARDSVAIRAD--QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS 78 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~~--~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~ 78 (359)
+++.+.|.++++.+|+++|+++. ++++||+||.++++++|..|.+ +|+++||+|+++++|+
T Consensus 61 ~tl~~~l~~~a~~~pd~~Al~~~~~~~~~TY~eL~~~~~~lA~~L~~-----------------~Gv~~gd~V~i~~~ns 123 (979)
T 3tsy_A 61 LSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHK-----------------LGVNQNDVVMLLLPNC 123 (979)
T ss_dssp SCHHHHHTTTGGGTTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-----------------TTCCTTCEEEEECSSC
T ss_pred CCHHHHHHHHHHhCCCCeEEEECCCCcEEEHHHHHHHHHHHHHHHHH-----------------cCCCCcCEEEEEeCCC
Confidence 57899999999999999999985 6899999999999999999999 7999999999999999
Q ss_pred HHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCCCCCC------c
Q 018211 79 FEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSS------E 152 (359)
Q Consensus 79 ~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 152 (359)
+++++++|||+++|++++|+++.++.+++.+++++++++++|++.+..+.+.............++....... .
T Consensus 124 ~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (979)
T 3tsy_A 124 PEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLRF 203 (979)
T ss_dssp HHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTSCCEEEECCCCTTSCCCTTEEEG
T ss_pred HHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcCCceEEEeCCcccccCCcccccH
Confidence 9999999999999999999999999999999999999999999987766555544433333333332111100 0
Q ss_pred ccccccc----hhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHH----hhccCCCceEEEecCchhhH
Q 018211 153 TTVFDQS----QAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE----AWEYTSADQFLHCLPLHHVH 224 (359)
Q Consensus 153 ~~~~~~~----~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~----~~~~~~~d~~l~~~pl~h~~ 224 (359)
....... .........++|+++|+|||||||.||||+++|++++..+..... .+++.++|++++.+|++|.+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~ 283 (979)
T 3tsy_A 204 TELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIY 283 (979)
T ss_dssp GGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHH
T ss_pred HHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHH
Confidence 1111100 111223456799999999999999999999999999988766543 35678899999999999999
Q ss_pred HHHHHHHHhhhcCcEEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhcc
Q 018211 225 GLFNALLAPLYAGATVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQ 304 (359)
Q Consensus 225 ~~~~~~~~~l~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~ 304 (359)
++...++.++..|+++++.+.+++..+++. ++++++|++.++|+++..+.+... ....++++
T Consensus 284 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~l~~ 345 (979)
T 3tsy_A 284 ALNSIMLCGLRVGAAILIMPKFEINLLLEL----------IQRCKVTVAPMVPPIVLAIAKSSE--------TEKYDLSS 345 (979)
T ss_dssp HHHHTHHHHHHHTCEEEECSSCCHHHHHHH----------HHHHTCCEEEECHHHHHHHHHCGG--------GGTSCCTT
T ss_pred HHHHHHHHHHhcCcEEEEeCCCCHHHHHHH----------HHHhCCeEEEcHHHHHHHHHhCcc--------ccCCCccc
Confidence 997778889999999999999999999998 888999999999999999987632 23346889
Q ss_pred ceEEEecCCCCCHHHHHHHHHHh-CCcccccccCCcCccccccc
Q 018211 305 LRLMMCGSSALPLPVMQQWETIT-GHRLLERYGMTEGCTKGRHC 347 (359)
Q Consensus 305 l~~i~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~TE~g~~~~~~ 347 (359)
||.+++||+++++++.++|.+.+ ++++++.||+||++++++.+
T Consensus 346 lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~ 389 (979)
T 3tsy_A 346 IRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMS 389 (979)
T ss_dssp CCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCSEEEEC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhhhhHHHHhC
Confidence 99999999999999999999998 89999999999999876544
No 23
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=3.8e-45 Score=358.07 Aligned_cols=306 Identities=18% Similarity=0.201 Sum_probs=248.5
Q ss_pred HHHHHHcCCC-----CCCceEEeeC-----CccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccc-cCCCCCeEE
Q 018211 4 FKAAYKKGSM-----ARDSVAIRAD-----QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVL-AGGCGARIG 72 (359)
Q Consensus 4 ~~~l~~~a~~-----~p~~~ai~~~-----~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~-gv~~gd~V~ 72 (359)
.+.|.++++. +|+++|+++. ++++||+||.++++++|..|.+ . |+++||+|+
T Consensus 41 ~~~l~~~a~~~~a~~~p~~~al~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~-----------------~~Gv~~gd~V~ 103 (570)
T 3c5e_A 41 SDVLDHWADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSG-----------------ACGLQRGDRVA 103 (570)
T ss_dssp HHTHHHHHHHHHTTSSCCCEEEEEECSSSCEEEEEHHHHHHHHHHHHHHHHT-----------------TTCCCTTCEEE
T ss_pred HHHHHHHHhhccccCCCCceEEEEEcCCCceeEEeHHHHHHHHHHHHHHHHH-----------------ccCCCCCCEEE
Confidence 4667777776 9999999972 3789999999999999999998 6 999999999
Q ss_pred EEcCCCHHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCc--eeccCCCC--C
Q 018211 73 IVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAK--FSLIPPVP--N 148 (359)
Q Consensus 73 i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~ 148 (359)
++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++.+..+.+.......+.. ...+.... .
T Consensus 104 i~~~n~~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (570)
T 3c5e_A 104 VVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCDG 183 (570)
T ss_dssp EECCSCHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESSSCCTT
T ss_pred EEcCCCHHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEecccCccc
Confidence 9999999999999999999999999999999999999999999999999988877776654443321 12222100 0
Q ss_pred CCCccccccc-chhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHH--HHHHHHHhhccCCCceEEEecCchhhHH
Q 018211 149 VSSETTVFDQ-SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDA--QVQMLTEAWEYTSADQFLHCLPLHHVHG 225 (359)
Q Consensus 149 ~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~--~~~~~~~~~~~~~~d~~l~~~pl~h~~~ 225 (359)
.....+.... ..........++++++|+|||||||.||||.++|+ ++. ..... ..++++++|++++..|++|..+
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~~~~ 261 (570)
T 3c5e_A 184 WLNFKKLLNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTGLQASDIMWTISDTGWILN 261 (570)
T ss_dssp SEEHHHHHHHSCSCCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTSCCTTCEEEECCCTTSHHH
T ss_pred cccHHHHhhcccccccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhcCCCCCceEEEcCchHHHHH
Confidence 0000000000 00011123457899999999999999999999999 554 33333 6678889999999999999999
Q ss_pred HHHHHHHhhhcCcEEEEcC--CCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhc
Q 018211 226 LFNALLAPLYAGATVEFMP--KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAK 303 (359)
Q Consensus 226 ~~~~~~~~l~~G~~i~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~ 303 (359)
++..++.++..|+++++.+ .+++..+++. ++++++|++.++|++++.+.+.. ....+++
T Consensus 262 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~---------~~~~~~~ 322 (570)
T 3c5e_A 262 ILCSLMEPWALGACTFVHLLPKFDPLVILKT----------LSSYPIKSMMGAPIVYRMLLQQD---------LSSYKFP 322 (570)
T ss_dssp HHHTTHHHHHHTCEEEEECCSSCCHHHHHHH----------HHHSCCCEEEECHHHHHHHHTSC---------TTTCCCT
T ss_pred HHHHHHHHHHhCceEEEecCCCCCHHHHHHH----------HHHhCCeEEeccHHHHHHHHhcc---------ccccccc
Confidence 8767889999999999987 6899999998 88899999999999999998751 1234578
Q ss_pred cceEEEecCCCCCHHHHHHHHHHhCCcccccccCCcCccccccc
Q 018211 304 QLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEGCTKGRHC 347 (359)
Q Consensus 304 ~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~TE~g~~~~~~ 347 (359)
+||.+++||+++++++.++|.+.+|+++++.||+||++++++..
T Consensus 323 ~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~ 366 (570)
T 3c5e_A 323 HLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVS 366 (570)
T ss_dssp TCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECC
T ss_pred cceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhhcccceecC
Confidence 99999999999999999999998999999999999999765543
No 24
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=4.9e-45 Score=357.57 Aligned_cols=293 Identities=20% Similarity=0.289 Sum_probs=244.9
Q ss_pred hHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHHH
Q 018211 2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF 81 (359)
Q Consensus 2 ~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~~ 81 (359)
++.+.|.++++.+|+++|+++.++++||+||.++++++|..|.+ +|+++||+|+++++|++++
T Consensus 76 ~l~~~l~~~a~~~pd~~A~~~~~~~~Ty~el~~~~~~lA~~L~~-----------------~Gv~~gd~V~i~~~n~~~~ 138 (570)
T 4gr5_A 76 CVHELFEAQAARAPDAVALLHEADELTYGALNERANRLAHRLVG-----------------LGVAPGTLVGVHLERGFDM 138 (570)
T ss_dssp CHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHH-----------------TTCCTTCEEEEECCSSHHH
T ss_pred CHHHHHHHHHHHCCCCeEEECCCCcEeHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEeCCCHHH
Confidence 57899999999999999999999999999999999999999999 6999999999999999999
Q ss_pred HHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCCCCCCcccccccchh
Q 018211 82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA 161 (359)
Q Consensus 82 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (359)
++++|||+++|++++|+++.++.+++.+++++++++++|++.+....+. ......+.... .......
T Consensus 139 ~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~-------~~~~~~~ 205 (570)
T 4gr5_A 139 VVALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRLT------GTTTLYVEDEA-------ASDAPAG 205 (570)
T ss_dssp HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSSC------SSEEEECCC--------------CC
T ss_pred HHHHHHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhccc------CCcceeeeccc-------ccccccc
Confidence 9999999999999999999999999999999999999999875322111 01111111000 0001111
Q ss_pred hhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHHHHHHhhhcCcEEE
Q 018211 162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVE 241 (359)
Q Consensus 162 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~ 241 (359)
.......++|+++|+|||||||.||||+++|+++.+.+.. ...+++.++|++++.+|++|..+.+ .++.+++.|++++
T Consensus 206 ~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~v 283 (570)
T 4gr5_A 206 NLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGL-ELFGALLFGARCV 283 (570)
T ss_dssp CCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHH-HHHHHHTTTCEEE
T ss_pred ccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHH-HHHHHHhcCCEEE
Confidence 1223456789999999999999999999999999776544 3456788999999999999977764 6888999999999
Q ss_pred EcC--CCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCCHHH
Q 018211 242 FMP--KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPV 319 (359)
Q Consensus 242 ~~~--~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~ 319 (359)
+.+ .+++..+++. ++++++|++.++|+++..+.+.. ...+++||.+++||+++++++
T Consensus 284 ~~~~~~~~~~~~~~~----------i~~~~vt~~~~~P~~~~~l~~~~-----------~~~~~~lr~~~~gG~~l~~~~ 342 (570)
T 4gr5_A 284 LQSGQNPDPLEIGEL----------VARHGVTMLQLSASLFNFLVDEV-----------PEAFEGVRYAITGGEPASVPH 342 (570)
T ss_dssp ECSSSSCCHHHHHHH----------HHHHTCCEEEEEHHHHHHHHHHC-----------GGGGTTCSEEEEESSCCCHHH
T ss_pred EcCCccCCHHHHHHH----------HHHcCCcEEEecHHHHHHHHhhc-----------hhhCCCceEEEEecccCCHHH
Confidence 987 4688899988 88899999999999999998652 235789999999999999999
Q ss_pred HHHHHHHh-CCcccccccCCcCccccccc
Q 018211 320 MQQWETIT-GHRLLERYGMTEGCTKGRHC 347 (359)
Q Consensus 320 ~~~~~~~~-~~~v~~~YG~TE~g~~~~~~ 347 (359)
.+++.+.+ ++++++.||+||++++++..
T Consensus 343 ~~~~~~~~~~~~l~~~YG~TE~~~~~~~~ 371 (570)
T 4gr5_A 343 VAKARRDHPALRLGNGYGPAESMGFTTHH 371 (570)
T ss_dssp HHHHHHHCTTCEEEEEECCGGGCSCSEEE
T ss_pred HHHHHHhCCCcEEEEeechhhheeeeeee
Confidence 99999887 89999999999998876654
No 25
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=1.4e-45 Score=363.17 Aligned_cols=309 Identities=18% Similarity=0.261 Sum_probs=254.4
Q ss_pred ChHHHHHHHcCCCCCCceEEeeC----CccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcC
Q 018211 1 MEVFKAAYKKGSMARDSVAIRAD----QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAK 76 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~~----~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~ 76 (359)
+|+.+.|.++++.+|+++|+++. ++++||+||.++++++|..|.+ +|+++||+|+++++
T Consensus 11 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~-----------------~gv~~gd~V~i~~~ 73 (590)
T 3kxw_A 11 QSLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQA-----------------EGAKPGDRVLLLFA 73 (590)
T ss_dssp SSHHHHHHHHHHHCTTSEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHH-----------------TTCCTTCEEEEECC
T ss_pred ccHHHHHHHHHHhCCCCeEEEEEcCCeeEEEcHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcC
Confidence 57899999999999999999863 5899999999999999999999 69999999999999
Q ss_pred CCHHHHHHHHHHHHhCCeeeecCCCCC---HHHHHHHHhhCCceEEEeccccHHHHHHHh-hhcCC--ceeccCCCCCCC
Q 018211 77 PSFEFVAGVLGTWFSGCIAVPLALSYP---ESELLHVMHDSDISMVLSTEDYREVLQNVA-SKSGA--KFSLIPPVPNVS 150 (359)
Q Consensus 77 n~~~~~~~~lA~~~~G~~~v~l~~~~~---~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~ 150 (359)
|++++++++|||+++|++++|+++..+ .+++.++++.+++++++++.+....+.... ...+. ....+.
T Consensus 74 ~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 147 (590)
T 3kxw_A 74 PGLPLIQAFLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPAIA------ 147 (590)
T ss_dssp SSHHHHHHHHHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEEEEE------
T ss_pred CchhHHHHHHHHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcccccccceee------
Confidence 999999999999999999999999884 578999999999999999987655443221 11110 000000
Q ss_pred Cccccc-ccchhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHHH
Q 018211 151 SETTVF-DQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNA 229 (359)
Q Consensus 151 ~~~~~~-~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~ 229 (359)
..... ............++|+++|+|||||||.||||+++|++++..+......+++.++|++++++|++|.+++...
T Consensus 148 -~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~ 226 (590)
T 3kxw_A 148 -LESIELNRSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGC 226 (590)
T ss_dssp -GGGCCGGGGGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHTT
T ss_pred -chhccccccccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchhhHHH
Confidence 00000 0111112334567899999999999999999999999999999999999999999999999999999999766
Q ss_pred HHHhhhcCcEEEEcCCC----ChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccc
Q 018211 230 LLAPLYAGATVEFMPKF----SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQL 305 (359)
Q Consensus 230 ~~~~l~~G~~i~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l 305 (359)
++.+++.|+++++.+.+ ++..+++. +.++++|++.++|.++..+.+..... .....++++|
T Consensus 227 ~~~~l~~G~~~v~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~p~~~~~l~~~~~~~-----~~~~~~l~~l 291 (590)
T 3kxw_A 227 ILTPIYGGIQAIMMSPFSFLQNPLSWLKH----------ITKYKATISGSPNFAYDYCVKRIREE-----KKEGLDLSSW 291 (590)
T ss_dssp THHHHHHTCEEEECCHHHHHHCTHHHHHH----------HHHHTCSEEEECTHHHHHHHHHCCGG-----GGTTCCCTTC
T ss_pred HHHHHhcCceEEEeCHHHHHHCHHHHHHH----------HHHhCCeeecCChhHHHHHHHHhhhh-----hccCCCchhh
Confidence 88999999999999865 78888888 88899999999999999987753211 1223568999
Q ss_pred eEEEecCCCCCHHHHHHHHHHhC------CcccccccCCcCcccccccc
Q 018211 306 RLMMCGSSALPLPVMQQWETITG------HRLLERYGMTEGCTKGRHCW 348 (359)
Q Consensus 306 ~~i~~~G~~l~~~~~~~~~~~~~------~~v~~~YG~TE~g~~~~~~~ 348 (359)
|.+++||+++++++.++|.+.++ .++++.||+||++++++...
T Consensus 292 r~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~ 340 (590)
T 3kxw_A 292 VTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGT 340 (590)
T ss_dssp CEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECC
T ss_pred HHHhhCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccceeeccc
Confidence 99999999999999999999883 47999999999998776543
No 26
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=3.5e-45 Score=357.82 Aligned_cols=295 Identities=20% Similarity=0.318 Sum_probs=243.6
Q ss_pred ChHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHH
Q 018211 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~ 80 (359)
+++.+.|.++++.+|+++|+++.++++||+||.++++++|..|.+ .|+++||+|+++++|+++
T Consensus 39 ~~l~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~-----------------~Gv~~gd~V~i~~~n~~e 101 (563)
T 1amu_A 39 KTIHQLFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIE-----------------KGIGKDTLVGIMMEKSID 101 (563)
T ss_dssp CCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHH-----------------TTCCTTCEEEEECCSSHH
T ss_pred CcHHHHHHHHHHHCCCCeEEEeCCceecHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEeCCCHH
Confidence 368899999999999999999999999999999999999999999 699999999999999999
Q ss_pred HHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCCCCCCcccccccch
Q 018211 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQ 160 (359)
Q Consensus 81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
+++++|||+++|++++|+++.++.+++.+++++++++++|++.+....+..+.. ......+.. .... ....
T Consensus 102 ~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~~--~~~~~~~~~-~~~~------~~~~ 172 (563)
T 1amu_A 102 LFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQF--NGQVEIFEE-DTIK------IREG 172 (563)
T ss_dssp HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCC--CSEEEECCC-STTT------TSCC
T ss_pred HHHHHHHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhccc--cCceeeecc-hhhc------cccC
Confidence 999999999999999999999999999999999999999999876554432211 111111111 0000 0001
Q ss_pred hhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHHHHHHhhhcCcEE
Q 018211 161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATV 240 (359)
Q Consensus 161 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i 240 (359)
........++|+++|+|||||||.||||+++|+++.+.+......+++.++|++++..|++|..+++ .++.+++.|+++
T Consensus 173 ~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~ 251 (563)
T 1amu_A 173 TNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVW-EMFMALLTGASL 251 (563)
T ss_dssp SCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHH-HHHHHHTTTCEE
T ss_pred ccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHH-HHHHHHHCCCEE
Confidence 1112234568999999999999999999999999999888888888999999999999999999985 688899999999
Q ss_pred EEcCC---CChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCCH
Q 018211 241 EFMPK---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPL 317 (359)
Q Consensus 241 ~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~ 317 (359)
++.+. +++..+++. +.++++|++.++|+++..+... .+++||.+++||+++++
T Consensus 252 v~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~--------------~~~~lr~~~~gG~~l~~ 307 (563)
T 1amu_A 252 YIILKDTINDFVKFEQY----------INQKEITVITLPPTYVVHLDPE--------------RILSIQTLITAGSATSP 307 (563)
T ss_dssp EECCHHHHTCHHHHHHH----------HHHTTCCEEEECHHHHTTSCTT--------------TCCSCSEEEEESSCCCH
T ss_pred EEcChHhhcCHHHHHHH----------HHHcCCcEEEeCHHHHHHHHhc--------------ccccccEEEEEEecCCH
Confidence 99886 678888888 7889999999999998877542 36789999999999999
Q ss_pred HHHHHHHHHhCCcccccccCCcCcccccccc
Q 018211 318 PVMQQWETITGHRLLERYGMTEGCTKGRHCW 348 (359)
Q Consensus 318 ~~~~~~~~~~~~~v~~~YG~TE~g~~~~~~~ 348 (359)
++.++|.+ ++++++.||+||++++++.+.
T Consensus 308 ~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~ 336 (563)
T 1amu_A 308 SLVNKWKE--KVTYINAYGPTETTICATTWV 336 (563)
T ss_dssp HHHHHHTT--TSEEEEEECCGGGSSCSEEEE
T ss_pred HHHHHHHh--CCeEEEEECcCHHhHhheeee
Confidence 99999876 489999999999998766543
No 27
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=3.3e-44 Score=352.31 Aligned_cols=308 Identities=18% Similarity=0.245 Sum_probs=256.8
Q ss_pred hHHHHHHHcCCCCCCceEEeeC---CccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCC
Q 018211 2 EVFKAAYKKGSMARDSVAIRAD---QKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS 78 (359)
Q Consensus 2 ~i~~~l~~~a~~~p~~~ai~~~---~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~ 78 (359)
++.+.|.++++.+|+.+++.+. ++++||+||.++++++|..|.+ +|+++||+|+++++|+
T Consensus 22 tl~~~l~~~a~~~p~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~-----------------~Gv~~gd~V~i~~~~~ 84 (576)
T 3gqw_A 22 TLVDALDYAALSSAGMNFYDRRCQLEDQLEYQTLKARAEAGAKRLLS-----------------LNLKKGDRVALIAETS 84 (576)
T ss_dssp SHHHHHHHHTTSSCEEEEECTTSCEEEEEEHHHHHHHHHHHHHHHHH-----------------TCCCTTCEEEEECCSS
T ss_pred cHHHHHHHHhhCCCCeEEeCCCCCceeEEcHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEcCCc
Confidence 6889999999999999998753 4799999999999999999999 6999999999999999
Q ss_pred HHHHHHHHHHHHhCCeeeecCCCCC-------HHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCCCCCC
Q 018211 79 FEFVAGVLGTWFSGCIAVPLALSYP-------ESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSS 151 (359)
Q Consensus 79 ~~~~~~~lA~~~~G~~~v~l~~~~~-------~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (359)
+++++++|||+++|++++|+++.++ .+++.++++++++++++++.+..+.+.................
T Consensus 85 ~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~----- 159 (576)
T 3gqw_A 85 SEFVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATHDNPELHVLSHAW----- 159 (576)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHHHHHGGGCTTCEEEEHHH-----
T ss_pred HHHHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHHHHhhccCCcceecchhh-----
Confidence 9999999999999999999999998 7899999999999999999988777766544332211110000
Q ss_pred cccccccchhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHh-hccCCCceEEEecCchhhHHHHHHH
Q 018211 152 ETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA-WEYTSADQFLHCLPLHHVHGLFNAL 230 (359)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~-~~~~~~d~~l~~~pl~h~~~~~~~~ 230 (359)
.... ...........++++++|+|||||||.||||+++|++++.++...... +++.++|++++++|++|.+++...+
T Consensus 160 ~~~~--~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~ 237 (576)
T 3gqw_A 160 FKAL--PEADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGIKLRPGDRCVSWLPFYHDMGLVGFL 237 (576)
T ss_dssp HHTS--CCCCCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTSCCCTTCCEEECCCTTSHHHHHHHT
T ss_pred hhcc--cccccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhcccCCCCcceEEEcCCccccccHHHHH
Confidence 0000 000111223457899999999999999999999999999988877665 7899999999999999999998778
Q ss_pred HHhhhcCcEEEEcCC----CChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccce
Q 018211 231 LAPLYAGATVEFMPK----FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLR 306 (359)
Q Consensus 231 ~~~l~~G~~i~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 306 (359)
+.++..|+++++.+. +++..+++. ++++++|++.++|.++..+.+.... ......++++||
T Consensus 238 ~~~l~~g~~~~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~p~~~~~l~~~~~~-----~~~~~~~l~~lr 302 (576)
T 3gqw_A 238 LTPVATQLSVDYLRTQDFAMRPLQWLKL----------ISKNRGTVSVAPPFGYELCQRRVNE-----KDLAELDLSCWR 302 (576)
T ss_dssp HHHHHTTCCEEECCHHHHHHCTTHHHHH----------HHHTTCCEEEECHHHHHHHHHSCCH-----HHHTTCCCTTCC
T ss_pred HHHHhcCceEEEcchhHhhhCHHHHHHH----------HHHhCCeEEEcCHHHHHHHHHHhcc-----cccccCChhhhH
Confidence 889999999999874 588889988 8889999999999999888764221 223445789999
Q ss_pred EEEecCCCCCHHHHHHHHHHh------CCcccccccCCcCcccccccc
Q 018211 307 LMMCGSSALPLPVMQQWETIT------GHRLLERYGMTEGCTKGRHCW 348 (359)
Q Consensus 307 ~i~~~G~~l~~~~~~~~~~~~------~~~v~~~YG~TE~g~~~~~~~ 348 (359)
.+++||+++++++.++|.+.+ +.++++.||+||++++++...
T Consensus 303 ~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~ 350 (576)
T 3gqw_A 303 VAGIGAEPISAEQLHQFAECFRQVNFDNKTFMPCYGLAENALAVSFSD 350 (576)
T ss_dssp EEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECC
T ss_pred hhhccCccCCHHHHHHHHHHHhhcCCCcccccccCCcccccceeeccc
Confidence 999999999999999999988 689999999999998776654
No 28
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=1.3e-44 Score=349.46 Aligned_cols=294 Identities=33% Similarity=0.506 Sum_probs=244.1
Q ss_pred ChHHHHHHHcCCCCCC-ceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCH
Q 018211 1 MEVFKAAYKKGSMARD-SVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF 79 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~-~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~ 79 (359)
+++.+.|.++++.+|+ ++|++++++++||+||.++++++|..|.. |++|+++++|++
T Consensus 22 ~tl~~~l~~~a~~~p~d~~Al~~~~~~~Ty~eL~~~~~~~A~~L~~----------------------~~~V~i~~~~~~ 79 (505)
T 3nyq_A 22 SSLFPALSPAPTGAPADRPALRFGERSLTYAELAAAAGATAGRIGG----------------------AGRVAVWATPAM 79 (505)
T ss_dssp --CCTTTSSCCCSGGGGSEEEEETTEEEEHHHHHHHHHHHHTTCC-------------------------CEEEECCSSH
T ss_pred chhHHHHHHHHHhCCCCCeEEEECCeeeeHHHHHHHHHHHHhhccC----------------------CCEEEEEcCCCH
Confidence 4677888899999998 99999999999999999999999987753 789999999999
Q ss_pred HHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcC-CceeccCCCCCCCCccccccc
Q 018211 80 EFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSG-AKFSLIPPVPNVSSETTVFDQ 158 (359)
Q Consensus 80 ~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 158 (359)
+++++++||+++|++++|+++.++.+++.+++++++++++|++.+.. ...... .....+... .
T Consensus 80 ~~~~~~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~-----------~ 143 (505)
T 3nyq_A 80 ETGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAE-----LPPALGALERVDVDVR-----------A 143 (505)
T ss_dssp HHHHHHHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCC-----CCGGGTTSEEEECCTT-----------C
T ss_pred HHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCccc-----cchhhccccccccccc-----------c
Confidence 99999999999999999999999999999999999999999986421 000000 111111000 0
Q ss_pred chhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHHHHHHhhhcCc
Q 018211 159 SQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGA 238 (359)
Q Consensus 159 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~ 238 (359)
..........++++++|+|||||||.||||+++|+++...+......+++.++|++++.+|++|..++...++.++..|+
T Consensus 144 ~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~ 223 (505)
T 3nyq_A 144 RGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGG 223 (505)
T ss_dssp CCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTC
T ss_pred ccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCC
Confidence 01112234567899999999999999999999999999999999999999999999999999999998777899999999
Q ss_pred EEEEcCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCCHH
Q 018211 239 TVEFMPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLP 318 (359)
Q Consensus 239 ~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~ 318 (359)
++++.+.+++..+++. + ++++|+++++|+++..+.+...... ....+++++|.+++||++++++
T Consensus 224 ~~~~~~~~~~~~~~~~----------i-~~~~t~~~~~P~~~~~l~~~~~~~~-----~~~~~l~~lr~i~~gg~~l~~~ 287 (505)
T 3nyq_A 224 SVRHLGRFSTEGAARE----------L-NDGATMLFGVPTMYHRIAETLPADP-----ELAKALAGARLLVSGSAALPVH 287 (505)
T ss_dssp EEEECSSCCHHHHHHH----------H-TTTCCEEEECHHHHHHHHHHGGGCH-----HHHHHHHHCSEEEECSSCCCHH
T ss_pred EEEECCCCChHHHHHH----------H-hhCCeEEEehHHHHHHHHHhhhcCc-----hhhcccccceEEEECCCCCCHH
Confidence 9999999999999988 6 7899999999999999987533221 1234678999999999999999
Q ss_pred HHHHHHHHhCCcccccccCCcCcccccccc
Q 018211 319 VMQQWETITGHRLLERYGMTEGCTKGRHCW 348 (359)
Q Consensus 319 ~~~~~~~~~~~~v~~~YG~TE~g~~~~~~~ 348 (359)
+.+++.+.+|+++++.||+||+++.++...
T Consensus 288 ~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~ 317 (505)
T 3nyq_A 288 DHERIAAATGRRVIERYGMTETLMNTSVRA 317 (505)
T ss_dssp HHHHHHHHHSCCCEEEEEETTTEEEEECCT
T ss_pred HHHHHHHhcCCeeecccchhhcccccccCC
Confidence 999999999999999999999997665543
No 29
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=7.4e-45 Score=352.75 Aligned_cols=300 Identities=16% Similarity=0.253 Sum_probs=246.2
Q ss_pred ChHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHH
Q 018211 1 MEVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE 80 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~ 80 (359)
+|+.+.|.++++.+|+++|+.+.++++||+||.++++++|..|.+ +|+++||+|+++++|+++
T Consensus 4 ~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~-----------------~g~~~gd~V~i~~~n~~~ 66 (521)
T 3l8c_A 4 KDMIDSIEQFAQTQADFPVYDCLGERRTYGQLKRDSDSIAAFIDS-----------------LALLAKSPVLVFGAQTYD 66 (521)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHH-----------------TCCCTTCCEEEEECSSHH
T ss_pred HHHHHHHHHHHHHCCCCcceecCCCeecHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEEeCCCHH
Confidence 468999999999999999999999999999999999999999999 699999999999999999
Q ss_pred HHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCCCCCCcccccccch
Q 018211 81 FVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQ 160 (359)
Q Consensus 81 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (359)
+++++|||+++|++++|+++.++.+++.+++++++++++|++.+....+.. .....+... .........
T Consensus 67 ~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~------~~~~~~~~~-----~~~~~~~~~ 135 (521)
T 3l8c_A 67 MLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIEG------ISLVSLSEI-----ESAKLAEMP 135 (521)
T ss_dssp HHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCTT------SEEEEHHHH-----HHHHHHTCC
T ss_pred HHHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCcccccccc------Ccccchhhh-----hhcccccCC
Confidence 999999999999999999999999999999999999999998753211100 000000000 000000001
Q ss_pred hhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHh--hccCCCceEEEecCchhhHHHHHHHHHhhhcCc
Q 018211 161 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA--WEYTSADQFLHCLPLHHVHGLFNALLAPLYAGA 238 (359)
Q Consensus 161 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~--~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~ 238 (359)
........++|+++|+|||||||.||||+++|+++.......... ++..+++++++..|++|..++. .++.++..|+
T Consensus 136 ~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~l~~G~ 214 (521)
T 3l8c_A 136 YERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVM-YWAPTLALGG 214 (521)
T ss_dssp CCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHH-HHHHHHHTTC
T ss_pred cccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHH-HHHHHHhcCC
Confidence 112234567899999999999999999999999999887776665 6778999999999999999885 5888899999
Q ss_pred EEEEcCCC---ChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCC
Q 018211 239 TVEFMPKF---SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSAL 315 (359)
Q Consensus 239 ~i~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l 315 (359)
++++.+.+ ++..+++. +.++++|++.++|+++..+..... ....++++||.+++||+++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~--------~~~~~~~~lr~~~~gG~~l 276 (521)
T 3l8c_A 215 TLFALPKELVADFKQLFTT----------IAQLPVGIWTSTPSFADMAMLSDD--------FCQAKMPALTHFYFDGEEL 276 (521)
T ss_dssp EEEECCGGGTTCHHHHHHH----------HHHSCCSEEEECHHHHHHHHTSTT--------CSTTTCTTCCEEEECSSCC
T ss_pred EEEEcCHHHhhCHHHHHHH----------HHHcCCcEEEeCCCHHHHHhhhhc--------cccccCccceEEEEecccC
Confidence 99999864 78888888 788999999999999998877532 2234678999999999999
Q ss_pred CHHHHHHHHHHh-CCcccccccCCcCccccccc
Q 018211 316 PLPVMQQWETIT-GHRLLERYGMTEGCTKGRHC 347 (359)
Q Consensus 316 ~~~~~~~~~~~~-~~~v~~~YG~TE~g~~~~~~ 347 (359)
++++.+++.+.+ ++++++.||+||++++++.+
T Consensus 277 ~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~ 309 (521)
T 3l8c_A 277 TVSTARKLFERFPSAKIINAYGPTEATVALSAI 309 (521)
T ss_dssp CHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEE
T ss_pred CHHHHHHHHHHCCCceEEeCcCccHHhhhhcee
Confidence 999999999998 89999999999999876653
No 30
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=1.1e-43 Score=347.54 Aligned_cols=301 Identities=16% Similarity=0.176 Sum_probs=236.0
Q ss_pred ChHHHHHHHcCCCCCCceEEeeCC----------ccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCe
Q 018211 1 MEVFKAAYKKGSMARDSVAIRADQ----------KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGAR 70 (359)
Q Consensus 1 m~i~~~l~~~a~~~p~~~ai~~~~----------~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~ 70 (359)
||+.+.|.++++.+|+++|+++.+ +++||+||.++++++|+.|.+ .|+ +||+
T Consensus 20 ~tl~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~-----------------~g~-~gd~ 81 (562)
T 3ite_A 20 VPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIH-----------------ASL-HGRA 81 (562)
T ss_dssp CCTTHHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHH-----------------TTC-SSCE
T ss_pred CCHHHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHh-----------------cCC-CCCE
Confidence 678999999999999999998632 789999999999999999998 688 7999
Q ss_pred EEEEcCCCHHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCCCCC
Q 018211 71 IGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVS 150 (359)
Q Consensus 71 V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (359)
|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++.+....+. .......+.... ..
T Consensus 82 V~i~~~n~~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~~~~-~~ 155 (562)
T 3ite_A 82 IAVSLDRSLIAFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVE-----LPPETKVLDTKN-QS 155 (562)
T ss_dssp EEEECCSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCC-----CCTTCEEEETTC-HH
T ss_pred EEEEeCCCHHHHHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccc-----cCccceeecccc-hh
Confidence 999999999999999999999999999999999999999999999999999864322110 000000000000 00
Q ss_pred CcccccccchhhhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHh--------hccCCCceEEEecCchh
Q 018211 151 SETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA--------WEYTSADQFLHCLPLHH 222 (359)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~--------~~~~~~d~~l~~~pl~h 222 (359)
..................++++++|+|||||||.||||+++|+++...+..+... +.+...+++++..|++|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (562)
T 3ite_A 156 FIENLSTQDTSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAF 235 (562)
T ss_dssp HHHHHHHSCCSCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTS
T ss_pred hhhhcccccccccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchh
Confidence 0000000001111223446788999999999999999999999999877765543 34678899999999999
Q ss_pred hHHHHHHHHHhhhcCcEEEEcCCCC-hhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhh
Q 018211 223 VHGLFNALLAPLYAGATVEFMPKFS-VRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASA 301 (359)
Q Consensus 223 ~~~~~~~~~~~l~~G~~i~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~ 301 (359)
..++. .++.++..|+++++.+.+. ++.+++. ++++++|++.++|++++.+... ..+
T Consensus 236 ~~~~~-~~~~~l~~g~~~~~~~~~~~~~~~~~~----------i~~~~~t~~~~~P~~l~~~~~~------------~~~ 292 (562)
T 3ite_A 236 DVHIG-EMFLAWRFGLCAVTGERLSMLDDLPRT----------FRELGVTHAGIVPSLLDQTGLV------------PED 292 (562)
T ss_dssp THHHH-HHHHHHHTTCEEEECCHHHHHHSHHHH----------HHHTTCCEEEECHHHHHHHTCC------------GGG
T ss_pred hhhHH-HHHHHHhcccEEEecchhhCHHHHHHH----------HHHcCCCEEEcCHHHHhhcccC------------ccc
Confidence 98875 5788899999999987654 4556666 7889999999999998876443 236
Q ss_pred hccceEEEecCCCCCHHHHHHHHHHhCCcccccccCCcCcccccccc
Q 018211 302 AKQLRLMMCGSSALPLPVMQQWETITGHRLLERYGMTEGCTKGRHCW 348 (359)
Q Consensus 302 ~~~l~~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~TE~g~~~~~~~ 348 (359)
+++||.+++||+++++++.++|.+.+++++++.||+||+++.++...
T Consensus 293 ~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~ 339 (562)
T 3ite_A 293 APHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGR 339 (562)
T ss_dssp STTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEEEE
T ss_pred cCceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeeeeee
Confidence 78999999999999999999999878999999999999988766544
No 31
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=4.1e-42 Score=364.96 Aligned_cols=298 Identities=22% Similarity=0.315 Sum_probs=246.2
Q ss_pred hHHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHHH
Q 018211 2 EVFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF 81 (359)
Q Consensus 2 ~i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~~ 81 (359)
++.+.|.++++.+|+++|++++++++||+||.++++++|..|.+ .|+++|++|+|+++|++++
T Consensus 465 ~l~~~~~~~~~~~p~~~Av~~~~~~lTY~eL~~~a~~lA~~L~~-----------------~Gv~~g~~V~i~~~~s~~~ 527 (1304)
T 2vsq_A 465 PLTYWFKEAVNANPDAPALTYSGQTLSYRELDEEANRIARRLQK-----------------HGAGKGSVVALYTKRSLEL 527 (1304)
T ss_dssp CHHHHHHHHHHHCTTSEEEESSSCEEEHHHHHHHHHHHHHHHHH-----------------TTCCTTCEEEECCCSSHHH
T ss_pred CHHHHHHHHHHhCCCCeEEEECCeeEcHHHHHHHHHHHHHHHHh-----------------cCcCCcCEEEEEeCCCHHH
Confidence 57889999999999999999999999999999999999999999 6999999999999999999
Q ss_pred HHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHHhhhcCCceeccCCCCCCCCcccccccchh
Q 018211 82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQA 161 (359)
Q Consensus 82 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (359)
++++||++++|+++||++|.++.+++.++++++++++++++.+....+..+.. ......++.. ... .....
T Consensus 528 vv~~lailkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~--~~~~~~~~~~------~~~-~~~~~ 598 (1304)
T 2vsq_A 528 VIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELPY--TGTTLFIDDQ------TRF-EEQAS 598 (1304)
T ss_dssp HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTCCC--CSEEEESSCG------GGG-GSCSS
T ss_pred HHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhccCC--CCcEEEeccc------ccc-ccccC
Confidence 99999999999999999999999999999999999999998754322111100 0111111110 000 00111
Q ss_pred hhcCCCCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHHHHHHhhhcCcEEE
Q 018211 162 EKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVE 241 (359)
Q Consensus 162 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~ 241 (359)
.......++++++|+|||||||.||||+++|+++.+. ......++++++|+++...|++|+.+.+ .++.+|+.|++++
T Consensus 599 ~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~~~~~~fd~~~~-~~~~~l~~G~~l~ 676 (1304)
T 2vsq_A 599 DPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLSVSNYAFDAFTF-DFYASMLNAARLI 676 (1304)
T ss_dssp CCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEECSCTTSTHHHH-HHHHHHTTTCEEE
T ss_pred CCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEEECCccHHHHHH-HHHHHHHcCCEEE
Confidence 1223456789999999999999999999999999865 3344567888999999999999998875 6899999999999
Q ss_pred EcCC---CChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCCHH
Q 018211 242 FMPK---FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLP 318 (359)
Q Consensus 242 ~~~~---~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~ 318 (359)
+.+. +++..+++. +.++++|++.++|++++.+.+.. ...+++||.+++||++++++
T Consensus 677 ~~~~~~~~~~~~l~~~----------i~~~~vt~~~~~p~~~~~l~~~~-----------~~~~~~lr~~~~gGe~l~~~ 735 (1304)
T 2vsq_A 677 IADEHTLLDTERLTDL----------ILQENVNVMFATTALFNLLTDAG-----------EDWMKGLRCILFGGERASVP 735 (1304)
T ss_dssp ECCGGGTTCHHHHHHH----------HHHHTCCEEEEEHHHHHHHHHHC-----------SHHHHTCSEEEEESSCCCHH
T ss_pred ECChhhcCCHHHHHHH----------HHHcCCcEEEccHHHHHHHHhhc-----------hhcCCCccEEEEecCCCCHH
Confidence 9974 688888888 78899999999999999987641 12367899999999999999
Q ss_pred HHHHHHHHh-CCcccccccCCcCcccccccc
Q 018211 319 VMQQWETIT-GHRLLERYGMTEGCTKGRHCW 348 (359)
Q Consensus 319 ~~~~~~~~~-~~~v~~~YG~TE~g~~~~~~~ 348 (359)
+.++|.+.+ +.+++|.||+||+++.++...
T Consensus 736 ~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~ 766 (1304)
T 2vsq_A 736 HVRKALRIMGPGKLINCYGPTEGTVFATAHV 766 (1304)
T ss_dssp HHHHHHHHHCTTCEEEEECCGGGSSCSEEEE
T ss_pred HHHHHHHhCCCCEEEEeEChhHHhHHheeee
Confidence 999999888 479999999999998766543
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=99.94 E-value=2.7e-27 Score=218.33 Aligned_cols=158 Identities=17% Similarity=0.224 Sum_probs=137.7
Q ss_pred CCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHhhccCCCceEEEecCchhhHHHHHHHHHhhhcCcEEEEcCCCChh
Q 018211 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVR 249 (359)
Q Consensus 170 ~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~~~~~~~~~ 249 (359)
+++++|+|||||||.||||++||+++.+.+......++++++|++++++|++|++|+. .++.++..|+++++.+...
T Consensus 37 d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~-~~~~~l~~g~~~~~~~~~~-- 113 (358)
T 4gs5_A 37 GAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLM-MLVRGMELDWELTVTEPTA-- 113 (358)
T ss_dssp TCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHH-HHHHHHHHTCEEEEECCCS--
T ss_pred CCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHH-HHHHHHHhCcEEEecCccc--
Confidence 7899999999999999999999999999999999999999999999999999999986 5788899999999886421
Q ss_pred HHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCCHHHHHHHHHHhCC
Q 018211 250 GIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETITGH 329 (359)
Q Consensus 250 ~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~ 329 (359)
+.++. ++++++|++.++|+++..+++... ...++++||.+++||+++++++.+++.+ +|+
T Consensus 114 ~~~~~----------i~~~~~t~~~~~P~~l~~ll~~~~---------~~~~l~~lr~v~~gG~~l~~~~~~~~~~-~~~ 173 (358)
T 4gs5_A 114 NPLAG----------LDHADFDFVAMVPMQLQSILENSA---------TSGQVDRLGKVLLGGAPVNHALAMQISD-LAM 173 (358)
T ss_dssp CTTTT----------CSSCCCSEEEECHHHHHHHHHCTT---------TGGGGGGGCSEEECSSCCCHHHHHHHHT-CSS
T ss_pred cHHHH----------HHHhCCeEEEcChHHHHHhhcccc---------ccccCCcceEEEEcccCCCchheecccc-cCc
Confidence 22333 889999999999999999987632 2346899999999999999999999986 599
Q ss_pred cccccccCCcCcccccccccc
Q 018211 330 RLLERYGMTEGCTKGRHCWQS 350 (359)
Q Consensus 330 ~v~~~YG~TE~g~~~~~~~~~ 350 (359)
++++.||+||+++.++....+
T Consensus 174 ~~~~~YG~TEt~~~~~~~~~~ 194 (358)
T 4gs5_A 174 PVYQSYGMTETVSHVALKALN 194 (358)
T ss_dssp CEEEEEECGGGSSEEEEEECS
T ss_pred eEEeccccccccceeeccccc
Confidence 999999999999876665443
No 33
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=99.91 E-value=1.2e-24 Score=206.17 Aligned_cols=158 Identities=17% Similarity=0.195 Sum_probs=136.5
Q ss_pred CCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHH---hhccCCCceEEEecCchhhHHHHHHHHHhhhcCcEEEEcCCC
Q 018211 170 EDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE---AWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKF 246 (359)
Q Consensus 170 ~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~---~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~~~~~~ 246 (359)
+++++|+|||||||.||+|.++|+++......... .+++.++|++++..|++|..+.+..++.++..|+++++.+.+
T Consensus 86 ~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~ 165 (436)
T 3qov_A 86 RDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAG 165 (436)
T ss_dssp HHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCSC
T ss_pred CCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCCC
Confidence 78899999999999999999999999877665533 458889999999999987777666788899999999999988
Q ss_pred ChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCCHHHHHHHHHH
Q 018211 247 SVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQWETI 326 (359)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~ 326 (359)
+++.+++. ++++++|++.++|+++..+.+....... ...+++||.+++||+++++++.++|.+.
T Consensus 166 ~~~~~~~~----------i~~~~~t~~~~~P~~~~~l~~~~~~~~~------~~~~~~lr~i~~gGe~l~~~~~~~~~~~ 229 (436)
T 3qov_A 166 NSKRQIKF----------ISDFKTTALHAIPSYAIRLAEVFQEEGI------DPRETTLKTLVIGAEPHTDEQRRKIERM 229 (436)
T ss_dssp CHHHHHHH----------HHHHTCCEEECCHHHHHHHHHHHHHTTC------CTTSSSCCEEEEESSCCCHHHHHHHHHH
T ss_pred CHHHHHHH----------HHHHCCCEEEECHHHHHHHHHHHHHcCC------CcccCCccEEEEeCCcCCHHHHHHHHHH
Confidence 99999998 7889999999999999999876322110 1136899999999999999999999999
Q ss_pred hCCcccccccCCcCccc
Q 018211 327 TGHRLLERYGMTEGCTK 343 (359)
Q Consensus 327 ~~~~v~~~YG~TE~g~~ 343 (359)
||+++++.||+||+++.
T Consensus 230 ~g~~v~~~YG~TE~~~~ 246 (436)
T 3qov_A 230 LNVKAYNSFGMTEMNGP 246 (436)
T ss_dssp HTSEEEEEEEEGGGTEE
T ss_pred hCccEEecCcchhhcCC
Confidence 99999999999999654
No 34
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.91 E-value=2.6e-24 Score=199.40 Aligned_cols=163 Identities=19% Similarity=0.221 Sum_probs=135.4
Q ss_pred CCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHH---HhhccCCCceEEEecCc-hhhHHHHHHHHHhhhcCcEEEE
Q 018211 167 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLT---EAWEYTSADQFLHCLPL-HHVHGLFNALLAPLYAGATVEF 242 (359)
Q Consensus 167 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~---~~~~~~~~d~~l~~~pl-~h~~~~~~~~~~~l~~G~~i~~ 242 (359)
..++++++|+|||||||.||+|.++|+++........ ..+++.++|++++..|+ +|..++.. .+.++..|+ +++
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~-~~~~~~~G~-~v~ 165 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAIN-KERALRLGG-MFF 165 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHH-HHHHHHTTS-CEE
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHH-HHHHHHcCC-EEE
Confidence 3678899999999999999999999999998877543 45677899999999999 99999865 555688999 777
Q ss_pred cCCCChh-----------------------HHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHH
Q 018211 243 MPKFSVR-----------------------GIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASA 299 (359)
Q Consensus 243 ~~~~~~~-----------------------~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~ 299 (359)
+..+++. .+++. ++++++|++.++|+++..+++.. ....
T Consensus 166 ~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------i~~~~~t~l~~~Ps~~~~l~~~~--------~~~~ 227 (369)
T 3hgu_A 166 SIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNT----------LMNQDIRFLVTTPPVLRELLKRP--------EVVL 227 (369)
T ss_dssp CCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----------HHHSCEEEEEECHHHHHHHTTCH--------HHHH
T ss_pred CccCChHHHHHhhcccchhhhHHHHHHHHHHHHHH----------HHhCCCCEEEeCHHHHHHHHhhh--------hhhc
Confidence 7777777 66666 78899999999999999998862 2233
Q ss_pred hhhccceEEEecCCCCCHHHHHHHH-HHh-CCcccccccCCcCccccccccc
Q 018211 300 SAAKQLRLMMCGSSALPLPVMQQWE-TIT-GHRLLERYGMTEGCTKGRHCWQ 349 (359)
Q Consensus 300 ~~~~~l~~i~~~G~~l~~~~~~~~~-~~~-~~~v~~~YG~TE~g~~~~~~~~ 349 (359)
.++++||.+++||+++++++.+++. +.| |+++++.||+||+++++..++.
T Consensus 228 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~ 279 (369)
T 3hgu_A 228 QMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI 279 (369)
T ss_dssp HHHHHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB
T ss_pred cccCCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc
Confidence 5678999999999999999999999 888 8999999999999987755543
No 35
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.89 E-value=2.4e-23 Score=197.19 Aligned_cols=159 Identities=20% Similarity=0.124 Sum_probs=134.8
Q ss_pred CCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHH---HhhccCCCceEEEecCc-hhhHHHHHHHHHhhhcCcEEEE
Q 018211 167 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLT---EAWEYTSADQFLHCLPL-HHVHGLFNALLAPLYAGATVEF 242 (359)
Q Consensus 167 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~---~~~~~~~~d~~l~~~pl-~h~~~~~~~~~~~l~~G~~i~~ 242 (359)
..++++++|+|||||||.||+|.++|+++........ ..+++.++|++++..|+ +|..++. .++.++..|+++++
T Consensus 87 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 87 VPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLG-AHYGAERAGLTVIP 165 (437)
T ss_dssp SCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHH-HHHHHHHTTCEEEC
T ss_pred CChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchH-HHHHHHHcCCEEEe
Confidence 4568899999999999999999999999987665443 35688899999999998 6777764 57888999999999
Q ss_pred cCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCCHHHHHH
Q 018211 243 MPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQ 322 (359)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~ 322 (359)
.+.++++.+++. ++++++|++.++|+++..+.+....... ...++++|.+++||+++++++.++
T Consensus 166 ~~~~~~~~~~~~----------i~~~~~t~l~~~Ps~~~~l~~~~~~~~~------~~~~~~lr~i~~gGe~l~~~~~~~ 229 (437)
T 2y27_A 166 FGGGQTEKQVQL----------IQDFRPDIIMVTPSYMLSIADEIERQGL------DPVQSSLRIGIFGAEPWTNDMRVA 229 (437)
T ss_dssp CCSCCHHHHHHH----------HHHHCCSEEEECHHHHHHHHHHHHHTTC------CGGGSSCCEEEEESSCCCHHHHHH
T ss_pred CCCCCHHHHHHH----------HHHhCCCEEEECHHHHHHHHHHHHHcCC------CcccCCeeEEEEcCccCCHHHHHH
Confidence 988899999998 7889999999999999999876321110 113578999999999999999999
Q ss_pred HHHHhCCcccccccCCcCcc
Q 018211 323 WETITGHRLLERYGMTEGCT 342 (359)
Q Consensus 323 ~~~~~~~~v~~~YG~TE~g~ 342 (359)
+.+.+|+++++.||+||+++
T Consensus 230 ~~~~~g~~v~~~YG~TE~~g 249 (437)
T 2y27_A 230 IEQRMGIDAVDIYGLSEVMG 249 (437)
T ss_dssp HHHHHTSEEEEEEEETTTTE
T ss_pred HHHHHCcCEEecCCchhhcC
Confidence 99989999999999999843
No 36
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.89 E-value=2.6e-23 Score=197.35 Aligned_cols=159 Identities=21% Similarity=0.168 Sum_probs=134.4
Q ss_pred CCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHH---hhccCCCceEEEecCc-hhhHHHHHHHHHhhhcCcEEEE
Q 018211 167 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE---AWEYTSADQFLHCLPL-HHVHGLFNALLAPLYAGATVEF 242 (359)
Q Consensus 167 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~---~~~~~~~d~~l~~~pl-~h~~~~~~~~~~~l~~G~~i~~ 242 (359)
..++++++|+|||||||.||+|.++|+++......... .+++.++|++++..|+ +|..++ ..++.++..|+++++
T Consensus 89 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~-~~~~~~~~~G~~~~~ 167 (443)
T 2y4o_A 89 VPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGL-GIHYGAERLGCMVVP 167 (443)
T ss_dssp SCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHH-HHHHHHHHHTCEEEC
T ss_pred CChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHH-HHHHHHHHcCCEEEE
Confidence 45688999999999999999999999998876554433 5788899999999999 466665 457888999999999
Q ss_pred cCCCChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHhhhhhhhHHHHHHHHhhhccceEEEecCCCCCHHHHHH
Q 018211 243 MPKFSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQGYEAMDTELQAASASAAKQLRLMMCGSSALPLPVMQQ 322 (359)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~ 322 (359)
.+.++++.+++. ++++++|++.++|+++..+.+....... ...+++||.+++||+++++++.++
T Consensus 168 ~~~~~~~~~~~~----------i~~~~~t~l~~~Ps~~~~l~~~~~~~~~------~~~~~~lr~i~~gGe~l~~~~~~~ 231 (443)
T 2y4o_A 168 MSGGQTEKQVQL----------IRDFEPKIILVTPSYMLNLIDEMVRQGM------DPAESSLKIGIFGAEPWTQALRNE 231 (443)
T ss_dssp CCSCCHHHHHHH----------HHHHCCSEEEECHHHHHHHHHHHHHTTC------CGGGSSCCEEEEESSCCCHHHHHH
T ss_pred CCCCCHHHHHHH----------HHHhCCcEEEECHHHHHHHHHHHHHcCC------CcccCCceEEEECCCcCCHHHHHH
Confidence 998899999998 7889999999999999999875321110 113589999999999999999999
Q ss_pred HHHHhCCcccccccCCcCcc
Q 018211 323 WETITGHRLLERYGMTEGCT 342 (359)
Q Consensus 323 ~~~~~~~~v~~~YG~TE~g~ 342 (359)
|.+.+|+++++.||+||+++
T Consensus 232 ~~~~~g~~v~~~YG~TE~~g 251 (443)
T 2y4o_A 232 VETRVGIDALDIYGLSEVMG 251 (443)
T ss_dssp HHHHHTCEEEEEEEETTTTE
T ss_pred HHHHhCcCEEeccCchhhcC
Confidence 99999999999999999854
No 37
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=93.68 E-value=0.093 Score=50.42 Aligned_cols=31 Identities=23% Similarity=0.264 Sum_probs=26.0
Q ss_pred CCCCCcEEEEecCCCC-CCcchhhhhhhHHHH
Q 018211 167 QRGEDPALIVYTSGTT-GKPKGVVHTHKSIDA 197 (359)
Q Consensus 167 ~~~~~~~~i~~TSGtT-G~pK~v~~s~~~l~~ 197 (359)
..++.+.+..-||||| |++|-+.+|...+-.
T Consensus 90 L~~~pi~~F~~SSGTT~g~~K~IP~T~e~l~~ 121 (581)
T 4eql_A 90 ISARTITGFLLSSGTSGGAQKMMPWNNKYLDN 121 (581)
T ss_dssp TCSSCCCEEEEEEEEETTEEEEEEECHHHHHH
T ss_pred cCCCCCCeEEeCCCCCCCCccccccCHHHHHH
Confidence 3456778899999999 789999999998755
No 38
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=91.38 E-value=1.5 Score=40.43 Aligned_cols=90 Identities=10% Similarity=0.126 Sum_probs=71.2
Q ss_pred ccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCC--CHHHHHHHHHHHHhCCeeeecCCCC
Q 018211 25 KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKP--SFEFVAGVLGTWFSGCIAVPLALSY 102 (359)
Q Consensus 25 ~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n--~~~~~~~~lA~~~~G~~~v~l~~~~ 102 (359)
-.+|...+...+..+++.+.. .|+.++|++....+. ....+...++.+..|+..++.+. .
T Consensus 108 v~~t~~~~~~~~~~~~~~~~~-----------------~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~ 169 (437)
T 2y27_A 108 VGYTAADIDTWANLVARSIRA-----------------AGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGG-G 169 (437)
T ss_dssp EEECHHHHHHHHHHHHHHHHH-----------------TTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCS-C
T ss_pred EecCHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCC-C
Confidence 468999998888888877776 689999999998885 34455567888899999887765 4
Q ss_pred CHHHHHHHHhhCCceEEEeccccHHHHHHH
Q 018211 103 PESELLHVMHDSDISMVLSTEDYREVLQNV 132 (359)
Q Consensus 103 ~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~ 132 (359)
+.+.+...+++.++.+++........+.+.
T Consensus 170 ~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~ 199 (437)
T 2y27_A 170 QTEKQVQLIQDFRPDIIMVTPSYMLSIADE 199 (437)
T ss_dssp CHHHHHHHHHHHCCSEEEECHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCEEEECHHHHHHHHHH
Confidence 788888899999999999887766655443
No 39
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=91.16 E-value=1.7 Score=40.12 Aligned_cols=89 Identities=16% Similarity=0.181 Sum_probs=71.1
Q ss_pred ccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCC--HHHHHHHHHHHHhCCeeeecCCCC
Q 018211 25 KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS--FEFVAGVLGTWFSGCIAVPLALSY 102 (359)
Q Consensus 25 ~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~--~~~~~~~lA~~~~G~~~v~l~~~~ 102 (359)
-.+|...+...+..+++.+.. .|+.++|++....+-+ ...+...++.+..|+..++.+..
T Consensus 110 v~~t~~~~~~~~~~~~~~~~~-----------------~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~- 171 (443)
T 2y4o_A 110 VGYTARDIDTWANVTARSIRA-----------------AGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSGG- 171 (443)
T ss_dssp EEECHHHHHHHHHHHHHHHHH-----------------TTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCSC-
T ss_pred EecCHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCCC-
Confidence 478999998888888877776 6899999999988853 45556678888999998887654
Q ss_pred CHHHHHHHHhhCCceEEEeccccHHHHHH
Q 018211 103 PESELLHVMHDSDISMVLSTEDYREVLQN 131 (359)
Q Consensus 103 ~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 131 (359)
..+.+...+++.++.+++........+.+
T Consensus 172 ~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~ 200 (443)
T 2y4o_A 172 QTEKQVQLIRDFEPKIILVTPSYMLNLID 200 (443)
T ss_dssp CHHHHHHHHHHHCCSEEEECHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCcEEEECHHHHHHHHH
Confidence 77888888999999999988776655544
No 40
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=91.07 E-value=1.7 Score=39.95 Aligned_cols=90 Identities=17% Similarity=0.066 Sum_probs=72.4
Q ss_pred ccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCC--CHHHHHHHHHHHHhCCeeeecCCCC
Q 018211 25 KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKP--SFEFVAGVLGTWFSGCIAVPLALSY 102 (359)
Q Consensus 25 ~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n--~~~~~~~~lA~~~~G~~~v~l~~~~ 102 (359)
-.+|.+.+...+..+++.+.. .++.++|++....+- ....+...++.+..|+..++.+..
T Consensus 104 v~~th~~~~~~~~~~~~~~~~-----------------~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~- 165 (436)
T 3qov_A 104 IVHSQHDLDSWANLVARCLYM-----------------VGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAG- 165 (436)
T ss_dssp EEEEHHHHHHHHHHHHHHHHH-----------------TTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCSC-
T ss_pred EEECHHHHHHHHHHHHHHHHH-----------------cCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCCC-
Confidence 478999999988888888877 689999999998874 355566778889999998887654
Q ss_pred CHHHHHHHHhhCCceEEEeccccHHHHHHH
Q 018211 103 PESELLHVMHDSDISMVLSTEDYREVLQNV 132 (359)
Q Consensus 103 ~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~ 132 (359)
..+.+...+++.++.+++........+...
T Consensus 166 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 195 (436)
T 3qov_A 166 NSKRQIKFISDFKTTALHAIPSYAIRLAEV 195 (436)
T ss_dssp CHHHHHHHHHHHTCCEEECCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCEEEECHHHHHHHHHH
Confidence 678888889999999999888766655544
No 41
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=82.06 E-value=18 Score=33.69 Aligned_cols=99 Identities=11% Similarity=0.064 Sum_probs=72.6
Q ss_pred CCCCceEEee---------CCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCC-HHHH
Q 018211 13 MARDSVAIRA---------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS-FEFV 82 (359)
Q Consensus 13 ~~p~~~ai~~---------~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~-~~~~ 82 (359)
..|+.+|++. .+-.+|.+.+...+..+... .++.++|++....|-. ...+
T Consensus 160 ~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~--------------------~~~~~~d~~l~~~p~~~~~g~ 219 (501)
T 3ipl_A 160 FNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKES--------------------LGFDRDTNWLSVLPIYHISGL 219 (501)
T ss_dssp CCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHH--------------------TCCCTTCEEEECSCTTSHHHH
T ss_pred CCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHh--------------------hCCCccCEEEEeCcHHHHHHH
Confidence 3567777764 12578999888776665433 4778899998888765 3334
Q ss_pred HHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHHH
Q 018211 83 AGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNV 132 (359)
Q Consensus 83 ~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~ 132 (359)
..+++.+..|+..+..+ ..+++.+...+++.++.++.........+...
T Consensus 220 ~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 268 (501)
T 3ipl_A 220 SVLLRAVIEGFTVRIVD-KFNAEQILTMIKNERITHISLVPQTLNWLMQQ 268 (501)
T ss_dssp HHHHHHHHHTCEEEECS-SCCHHHHHHHHHHSCCCEEEECHHHHHHHHHH
T ss_pred HHHHHHHHcCceEEeCC-CCCHHHHHHHHHHcCCcEEEchHHHHHHHHhc
Confidence 44677888999888775 47888999999999999999887766665543
No 42
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=79.17 E-value=13 Score=35.29 Aligned_cols=97 Identities=12% Similarity=0.118 Sum_probs=69.2
Q ss_pred CceEEee---------CCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHH--HHHH
Q 018211 16 DSVAIRA---------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFE--FVAG 84 (359)
Q Consensus 16 ~~~ai~~---------~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~--~~~~ 84 (359)
+.+|++. ++-.+|.+.+...+......+.. .++.++|++....|-.-. +...
T Consensus 192 ~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~-----------------~~~~~~d~~l~~~p~~h~~g~~~~ 254 (548)
T 2d1s_A 192 EQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYG-----------------NQVSPGTAVLTVVPFHHGFGMFTT 254 (548)
T ss_dssp TCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTS-----------------CCCCTTCEEEECSCTTSHHHHHHH
T ss_pred CCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhc-----------------cCCCccceEEEeccHHHHHHHHHH
Confidence 6777764 13578999888776665444332 477889998888776532 2333
Q ss_pred HHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHH
Q 018211 85 VLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQN 131 (359)
Q Consensus 85 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 131 (359)
+++.+ .|+..+..+ ...++.+...+++.++.+++........+..
T Consensus 255 ~~~~l-~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 299 (548)
T 2d1s_A 255 LGYLI-CGFRVVMLT-KFDEETFLKTLQDYKCTSVILVPTLFAILNK 299 (548)
T ss_dssp HHHHH-TTCEEEECC-CCCHHHHHHHHHHTTEEEEEECHHHHHHHHH
T ss_pred HHHHh-cCcEEEEcC-CCCHHHHHHHHHHcCCcEEEecHHHHHHHHh
Confidence 56667 999888775 5688889999999999999988766655543
No 43
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=78.31 E-value=8.7 Score=34.16 Aligned_cols=86 Identities=8% Similarity=-0.065 Sum_probs=61.6
Q ss_pred ccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCC--CHHHHHHHHHHHHhCCeeeecCCCC
Q 018211 25 KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKP--SFEFVAGVLGTWFSGCIAVPLALSY 102 (359)
Q Consensus 25 ~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n--~~~~~~~~lA~~~~G~~~v~l~~~~ 102 (359)
..+|.+.+...+..++..+.. .|+.++|++....+- ..-.+...+++...|+.+++. ..
T Consensus 109 v~~t~~~~~~~~~~~~~~~~~-----------------~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~--~~ 169 (369)
T 3hgu_A 109 VVAYDAWIEALISWRMSGYQH-----------------RPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSI--DI 169 (369)
T ss_dssp EEECHHHHHHHHHHHTTTTTT-----------------STTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECC--CC
T ss_pred EEECHHHHHHHHHHHHhhHHh-----------------hCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECc--cC
Confidence 467888888888777666666 689999999999886 333444555568889855553 33
Q ss_pred CHH-----------------------HHHHHHhhCCceEEEeccccHHHH
Q 018211 103 PES-----------------------ELLHVMHDSDISMVLSTEDYREVL 129 (359)
Q Consensus 103 ~~~-----------------------~l~~~l~~~~~~~vi~~~~~~~~~ 129 (359)
++. ++...+++.++.+++........+
T Consensus 170 dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l 219 (369)
T 3hgu_A 170 DPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLREL 219 (369)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHH
T ss_pred ChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHH
Confidence 444 666688999999998877655444
No 44
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=74.88 E-value=19 Score=33.95 Aligned_cols=104 Identities=13% Similarity=0.039 Sum_probs=70.9
Q ss_pred CCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHh---hccCCCceEEEecCchhhHHHHHHHHHhhhcCcEEEEcC
Q 018211 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA---WEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP 244 (359)
Q Consensus 168 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~~~~ 244 (359)
.++.++++....+..+ -..-.+|++.+...+..+... .|..++|++...++-+... +..+++++..|+..+..+
T Consensus 32 ~p~~~A~~~~~~~~~~-~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~--~~~~lA~~~~G~~~vpl~ 108 (549)
T 3g7s_A 32 FGEKTAIISAEPKFPS-EFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDY--VMTIYALWRVAATPVPIN 108 (549)
T ss_dssp HTTSEEEEEESSCCCC-SSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH--HHHHHHHHHTTCEEEECC
T ss_pred CCCceEEEeCCCcccc-cccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH--HHHHHHHHHhCCEEEccC
Confidence 3466776654321111 112468899888877766554 4788999999999887543 446899999999999987
Q ss_pred C-CChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHH
Q 018211 245 K-FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLI 284 (359)
Q Consensus 245 ~-~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~ 284 (359)
. ...+.+... ++..+++.++..+.....+.
T Consensus 109 ~~~~~~~l~~i----------l~~~~~~~~i~~~~~~~~~~ 139 (549)
T 3g7s_A 109 PMYKSFELEHI----------LNDSEATTLVVHSMLYENFK 139 (549)
T ss_dssp TTCCHHHHHHH----------HHHTTCSEEEEEGGGHHHHH
T ss_pred CCCCHHHHHHH----------HHhcCCCEEEEChHHHHHHH
Confidence 5 444555444 66678888888777665544
No 45
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=72.30 E-value=34 Score=32.17 Aligned_cols=97 Identities=13% Similarity=0.103 Sum_probs=69.7
Q ss_pred CCCceEEee---------CCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHHH--H
Q 018211 14 ARDSVAIRA---------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF--V 82 (359)
Q Consensus 14 ~p~~~ai~~---------~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~~--~ 82 (359)
.|+.+|++. ++-.+|.+.+...+...... .++.++|++....|-...+ .
T Consensus 180 ~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~--------------------~~~~~~d~~l~~~p~~h~~~~~ 239 (539)
T 1mdb_A 180 KSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEV--------------------CWLDHSTVYLAALPMAHNYPLS 239 (539)
T ss_dssp CTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHH--------------------HTCCTTCEEEECSCTTSHHHHH
T ss_pred CcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHh--------------------hCCCCCCEEEEeecccccchhh
Confidence 456777663 12578998887776655433 4778899998888765332 2
Q ss_pred H-HHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHH
Q 018211 83 A-GVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQN 131 (359)
Q Consensus 83 ~-~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 131 (359)
. .+++.+..|+..+..+ ...++.+...+++.++.++.........+..
T Consensus 240 ~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 288 (539)
T 1mdb_A 240 SPGVLGVLYAGGRVVLSP-SPSPDDAFPLIEREKVTITALVPPLAMVWMD 288 (539)
T ss_dssp SSHHHHHHHTTCEEEECS-SSSHHHHHHHHHHHTCSEEEECHHHHHHHHH
T ss_pred HHHHHHHHHhCCEEEECC-CCCHHHHHHHHHHcCCeEEEccHHHHHHHHh
Confidence 2 4788888999888764 4678888889999999999888766555543
No 46
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=71.66 E-value=36 Score=31.98 Aligned_cols=96 Identities=13% Similarity=0.112 Sum_probs=68.8
Q ss_pred CCCceEEee---------CCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHHHHH-
Q 018211 14 ARDSVAIRA---------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEFVA- 83 (359)
Q Consensus 14 ~p~~~ai~~---------~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~~~~- 83 (359)
.|+.+|++. ++-.+|.+.+...+...+.. .++.++|++....|-...+-.
T Consensus 189 ~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~--------------------~~~~~~d~~l~~~p~~h~~~~~ 248 (544)
T 3o83_A 189 PADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEI--------------------CGLNSNTRLLCALPAPHNFMLS 248 (544)
T ss_dssp CTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHH--------------------TTCCTTCEEEECSCTTSHHHHH
T ss_pred CccceEEEEECCCcccCCceEEechHHHHHHHHHHHHH--------------------hCCCCCCeEEEecCcceEeecc
Confidence 466777763 12578999888777665543 377889999988876543322
Q ss_pred --HHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHH
Q 018211 84 --GVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQ 130 (359)
Q Consensus 84 --~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 130 (359)
.+++.+..|+..+..+ ...+..+...+++.++.++.........+.
T Consensus 249 ~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 296 (544)
T 3o83_A 249 SPGALGVLHAGGCVVMAP-NPEPLNCFSIIQRHQVNMASLVPSAVIMWL 296 (544)
T ss_dssp SSHHHHHHHTTCEEEECS-SCCHHHHHHHHHHHTCCEEEECHHHHHHHH
T ss_pred hHHHHHHHHcCCEEEECC-CCCHHHHHHHHHHHCCCEEEechHHHHHHH
Confidence 4678888999888765 457778888899999999988776554443
No 47
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=70.88 E-value=16 Score=34.10 Aligned_cols=95 Identities=15% Similarity=0.044 Sum_probs=68.2
Q ss_pred CCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHh---hccCCCceEEEecCchhhHHHHHHHHHhhhcCcEEEEcC
Q 018211 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA---WEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP 244 (359)
Q Consensus 168 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~~~~ 244 (359)
.|+.+|++. . +-.+|++.+...+..+... .|..++|++...+|-+.. ++..+++++..|+..+..+
T Consensus 19 ~pd~~Al~~-~--------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~--~~~~~lA~~~~Ga~~vpl~ 87 (509)
T 3ivr_A 19 FPDRTAFMV-D--------GVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSE--MIELIGAVALIGAILLPVN 87 (509)
T ss_dssp STTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHH--HHHHHHHHHHTTCEEEECC
T ss_pred CCCceEEEE-C--------CcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHH--HHHHHHHHHHhCCEEEecC
Confidence 346666654 1 2368999998877776654 478899999999988754 3456899999999999987
Q ss_pred C-CChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHH
Q 018211 245 K-FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRL 283 (359)
Q Consensus 245 ~-~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l 283 (359)
. ...+.+... ++..++..++..+.....+
T Consensus 88 ~~~~~~~l~~~----------l~~~~~~~vi~~~~~~~~~ 117 (509)
T 3ivr_A 88 YRLNADEIAFV----------LGDGAPSVVVAGTDYRDIV 117 (509)
T ss_dssp TTSCHHHHHHH----------HHHHCEEEEEECSTTHHHH
T ss_pred CCCCHHHHHHH----------HHhcCceEEEECcchhhhH
Confidence 5 444555444 6667888888877665553
No 48
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=70.08 E-value=16 Score=34.43 Aligned_cols=98 Identities=14% Similarity=0.154 Sum_probs=68.9
Q ss_pred CCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHh---hccCCCceEEEecCchhhHHHHHHHHHhhhcCcEEEEcC
Q 018211 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA---WEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP 244 (359)
Q Consensus 168 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~~~~ 244 (359)
.++.++++....| -.+|++.+...+..+... .|..++|++...+|-+... +..+++++..|+..+..+
T Consensus 35 ~p~~~a~~~~~~~-------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~--~~~~la~~~~Gav~vpl~ 105 (536)
T 3ni2_A 35 HSSKPCLINGANG-------DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEF--VLAFLGASHRGAIITAAN 105 (536)
T ss_dssp STTSEEEEETTTC-------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH--HHHHHHHHHHTCEEEECC
T ss_pred CCCceEEEECCCC-------CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH--HHHHHHHHHhCCEEeccC
Confidence 4567776643222 358999988877666554 4788999999999887543 456899999999999887
Q ss_pred C-CChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHH
Q 018211 245 K-FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLI 284 (359)
Q Consensus 245 ~-~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~ 284 (359)
. ...+.+... ++..++..++..+.....+.
T Consensus 106 ~~~~~~~l~~~----------l~~~~~~~~i~~~~~~~~~~ 136 (536)
T 3ni2_A 106 PFSTPAELAKH----------AKASRAKLLITQACYYEKVK 136 (536)
T ss_dssp TTCCHHHHHHH----------HHHHTEEEEEECGGGTHHHH
T ss_pred CCCCHHHHHHH----------HHhcCCEEEEEChHHHHHHH
Confidence 5 445555544 56678888887776555443
No 49
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=69.69 E-value=26 Score=33.09 Aligned_cols=89 Identities=12% Similarity=-0.023 Sum_probs=64.3
Q ss_pred ccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCC-HHHHHHHHHHHHhCCeeeecCCCCC
Q 018211 25 KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS-FEFVAGVLGTWFSGCIAVPLALSYP 103 (359)
Q Consensus 25 ~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~-~~~~~~~lA~~~~G~~~v~l~~~~~ 103 (359)
-.+|.+.+...+......+.. .++.++|++....|-. .-.+...++.+..|+..+... ...
T Consensus 208 V~~th~~~~~~~~~~~~~~~~-----------------~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~-~~~ 269 (550)
T 3rix_A 208 VALPHRTACVRFSHARDPIFG-----------------NQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMY-RFE 269 (550)
T ss_dssp EEEEHHHHHHHHHHHTCTTTS-----------------CCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-SCC
T ss_pred hhhhHHHHHHHHHHhhhhhcc-----------------ccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeC-CCC
Confidence 578888887666554443333 3788899998888766 333455677788899888774 567
Q ss_pred HHHHHHHHhhCCceEEEeccccHHHHHH
Q 018211 104 ESELLHVMHDSDISMVLSTEDYREVLQN 131 (359)
Q Consensus 104 ~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 131 (359)
++.+...+++.++.+++........+..
T Consensus 270 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 297 (550)
T 3rix_A 270 EELFLRSLQDYKIQSALLVPTLFSFFAK 297 (550)
T ss_dssp HHHHHHHHHHTTCSEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEEeCcHHHHHHHh
Confidence 8888889999999999887766555443
No 50
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=67.71 E-value=50 Score=30.76 Aligned_cols=96 Identities=6% Similarity=0.055 Sum_probs=67.4
Q ss_pred CCCceEEee---------CCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHHH--H
Q 018211 14 ARDSVAIRA---------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF--V 82 (359)
Q Consensus 14 ~p~~~ai~~---------~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~~--~ 82 (359)
.|+.+|++. ++-.+|.+.+...+..++.. .++.++|++...+|-.-.+ .
T Consensus 168 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~--------------------~~~~~~d~~l~~~p~~~~~~~~ 227 (517)
T 3r44_A 168 GGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWAST--------------------IDVRYRDRLLLPLPMFHVAALT 227 (517)
T ss_dssp CTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHH--------------------SCCCTTCEEEECSCTTSHHHHH
T ss_pred CCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHh--------------------cCCCCCCEEEEeCchHHHHHHH
Confidence 356777653 12578999888777665443 3778899999888876332 2
Q ss_pred HHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHHH
Q 018211 83 AGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQN 131 (359)
Q Consensus 83 ~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 131 (359)
..+++++ .|+..+.. +....+.+...+++.++.++.........+..
T Consensus 228 ~~~~~~~-~G~~~v~~-~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 274 (517)
T 3r44_A 228 TVIFSAM-RGVTLISM-PQFDATKVWSLIVEERVCIGGAVPAILNFMRQ 274 (517)
T ss_dssp HHHHHHH-HTCEEEEC-SSCCHHHHHHHHHHTTCCEEEECHHHHHHHHH
T ss_pred HHHHHHh-cCeEEEEe-CCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHh
Confidence 2244555 89888876 45788888899999999999888766655543
No 51
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=62.41 E-value=30 Score=31.78 Aligned_cols=103 Identities=14% Similarity=0.104 Sum_probs=69.8
Q ss_pred CCCCcEEEEecC--CCCCCcchhhhhhhHHHHHHHHHHHhh---ccCCCceEEEecCchhhHHHHHHHHHhhhcCcEEEE
Q 018211 168 RGEDPALIVYTS--GTTGKPKGVVHTHKSIDAQVQMLTEAW---EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEF 242 (359)
Q Consensus 168 ~~~~~~~i~~TS--GtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~~ 242 (359)
.++.+|++.... +.+| ....+|.+.+...+..+...+ +. ++|++...++-+... +..+++++..|+..+.
T Consensus 37 ~pd~~Al~~~~~~~~~~g--~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~--~~~~lA~~~~G~v~vp 111 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDG--VAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEY--VVAFLGALQAGRIAVP 111 (480)
T ss_dssp STTSEEEEEEETTTCTTC--EEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHH--HHHHHHHHHTTCEEEE
T ss_pred CCCCceEEEecccCCCCC--ceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHH--HHHHHHHHHhCcEEEe
Confidence 456777765442 2222 235789999988877776654 53 799999888877543 4468999999999998
Q ss_pred cCC----CChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHHHh
Q 018211 243 MPK----FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRLIQ 285 (359)
Q Consensus 243 ~~~----~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~ 285 (359)
.+. ...+.+... ++..++..++..+.....+..
T Consensus 112 l~~~~~~~~~~~l~~i----------l~~~~~~~vi~~~~~~~~~~~ 148 (480)
T 3t5a_A 112 LSVPQGGVTDERSDSV----------LSDSSPVAILTTSSAVDDVVQ 148 (480)
T ss_dssp ECSCCSCTTCCHHHHH----------HHHHCCSEEEECTTTHHHHHH
T ss_pred eCCCCccchHHHHHHH----------HHhCCCCEEEeChhHHHHHHH
Confidence 864 234444444 555678888877776665544
No 52
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=61.64 E-value=28 Score=32.36 Aligned_cols=79 Identities=9% Similarity=-0.038 Sum_probs=58.2
Q ss_pred hhhhhHHHHHHHHHHHh---hccCCCceEEEecCchhhHHHHHHHHHhhhcCcEEEEcCCC-ChhHHHHHHHhhcCCCCC
Q 018211 189 VHTHKSIDAQVQMLTEA---WEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKF-SVRGIWQRWRESYPVNGN 264 (359)
Q Consensus 189 ~~s~~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~~~~~~-~~~~~~~~~~~~~~~~~~ 264 (359)
.+|++.+...+..+... .|..++|++...+|-+... +..+++++..|+..+..+.. ..+.+...
T Consensus 28 ~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~--~~~~lA~~~~Ga~~vpl~~~~~~~~l~~i---------- 95 (503)
T 4fuq_A 28 KISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEA--LVLYLATVRAGGVYLPLNTAYTLHELDYF---------- 95 (503)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHH--HHHHHHHHHTTCEEEECCTTCCHHHHHHH----------
T ss_pred EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH--HHHHHHHHHcCcEEEecCCCCCHHHHHHH----------
Confidence 58999998877766554 4788999999999887543 44689999999999998754 44444444
Q ss_pred CCCCcceeeecchHH
Q 018211 265 RAGEAITAFTGVPTM 279 (359)
Q Consensus 265 i~~~~vt~~~~~P~~ 279 (359)
++..++..++..+..
T Consensus 96 l~~~~~~~vi~~~~~ 110 (503)
T 4fuq_A 96 ITDAEPKIVVCDPSK 110 (503)
T ss_dssp HHHHCCSEEEECGGG
T ss_pred HHhcCCcEEEECchh
Confidence 556677777776544
No 53
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=60.81 E-value=34 Score=31.76 Aligned_cols=84 Identities=14% Similarity=0.056 Sum_probs=58.7
Q ss_pred hhhhhhHHHHHHHHHHHh---hccCCCceEEEecCchhhHHHHHHHHHhhhcCcEEEEcCC-CChhHHHHHHHhhcCCCC
Q 018211 188 VVHTHKSIDAQVQMLTEA---WEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPK-FSVRGIWQRWRESYPVNG 263 (359)
Q Consensus 188 v~~s~~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~~~~~-~~~~~~~~~~~~~~~~~~ 263 (359)
..+|++.+...+..+... .|..++|++...+|-+... +..+++++..|+..+..+. ...+.+...
T Consensus 28 ~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~--~~~~lA~~~~G~~~vpl~~~~~~~~l~~~--------- 96 (504)
T 1t5h_X 28 LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADV--VIAILALHRLGAVPALLNPRLKSAELAEL--------- 96 (504)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHH--HHHHHHHHHHTCEEEEECTTSCHHHHHHH---------
T ss_pred ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHH--HHHHHHHHHhCcEEEecCCccChHHHHHH---------
Confidence 468999988877666554 4788999999999887543 4468999999999998875 445555554
Q ss_pred CCCCCcceeeec--chHHHHHH
Q 018211 264 NRAGEAITAFTG--VPTMYTRL 283 (359)
Q Consensus 264 ~i~~~~vt~~~~--~P~~~~~l 283 (359)
++..+++.++. .+.....+
T Consensus 97 -l~~~~~~~~i~~~~~~~~~~~ 117 (504)
T 1t5h_X 97 -IKRGEMTAAVIAVGRQVADAI 117 (504)
T ss_dssp -HHHTTCSEEEECC--CHHHHH
T ss_pred -HhhcCCcEEEEecchhhhhhh
Confidence 55567777766 55544443
No 54
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=60.79 E-value=34 Score=32.40 Aligned_cols=81 Identities=12% Similarity=0.018 Sum_probs=58.7
Q ss_pred hhhhhHHHHHHHHHHHh---hccCCCceEEEecCchhhHHHHHHHHHhhhcCcEEEEcCC-CChhHHHHHHHhhcCCCCC
Q 018211 189 VHTHKSIDAQVQMLTEA---WEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPK-FSVRGIWQRWRESYPVNGN 264 (359)
Q Consensus 189 ~~s~~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~~~~~-~~~~~~~~~~~~~~~~~~~ 264 (359)
.+|++.+...+..+... .|..++|++...+|-+.. ++..+++++..|+..+..+. +..+.+...
T Consensus 64 ~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e--~~~~~lA~~~~Gav~vpl~~~~~~~~l~~i---------- 131 (563)
T 1amu_A 64 QLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSID--LFIGILAVLKAGGAYVPIDIEYPKERIQYI---------- 131 (563)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH--HHHHHHHHHHTTCEEEECCTTSCHHHHHHH----------
T ss_pred eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHH--HHHHHHHHHHhCCEEEEeCCCCcHHHHHHH----------
Confidence 58999988777666554 478899999999887754 34568999999999998875 444554444
Q ss_pred CCCCcceeeecchHHHH
Q 018211 265 RAGEAITAFTGVPTMYT 281 (359)
Q Consensus 265 i~~~~vt~~~~~P~~~~ 281 (359)
++..++..++..+....
T Consensus 132 l~~~~~~~li~~~~~~~ 148 (563)
T 1amu_A 132 LDDSQARMLLTQKHLVH 148 (563)
T ss_dssp HHHHTCSEEEECGGGHH
T ss_pred HHhcCCCEEEEcCchhh
Confidence 55567777777665443
No 55
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=60.39 E-value=25 Score=33.05 Aligned_cols=99 Identities=13% Similarity=0.009 Sum_probs=68.0
Q ss_pred CCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHh---hccCCCceEEEecCchhhHHHHHHHHHhhhcCcEEEEcC
Q 018211 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA---WEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP 244 (359)
Q Consensus 168 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~~~~ 244 (359)
.++.++++....+ ....+|++.+...+..+... .|..++|++...++-+.. ++..+++++..|+..+..+
T Consensus 31 ~p~~~a~~~~~~~-----~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e--~~~~~lA~~~~Gav~vpl~ 103 (541)
T 1v25_A 31 FGRKEVVSRLHTG-----EVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFR--HLEAYFAVPGMGAVLHTAN 103 (541)
T ss_dssp STTCEEEEECTTS-----CEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH--HHHHHHHHHHTTCEEEECC
T ss_pred CCCceEEEEecCC-----CCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHH--HHHHHHHHHhcCcEEEecC
Confidence 3455666543211 22368999888877666544 478899999999987654 3446899999999999887
Q ss_pred C-CChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHH
Q 018211 245 K-FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRL 283 (359)
Q Consensus 245 ~-~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l 283 (359)
. ...+.+... ++..++..++..+.....+
T Consensus 104 ~~~~~~~l~~~----------l~~~~~~~vi~~~~~~~~~ 133 (541)
T 1v25_A 104 PRLSPKEIAYI----------LNHAEDKVLLFDPNLLPLV 133 (541)
T ss_dssp TTSCHHHHHHH----------HHHHTCSEEEECGGGHHHH
T ss_pred cccCHHHHHHH----------HHhCCCcEEEEChhHHHHH
Confidence 5 455555554 5667888888877665543
No 56
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=60.38 E-value=79 Score=30.21 Aligned_cols=96 Identities=13% Similarity=0.079 Sum_probs=68.0
Q ss_pred CCCceEEee---------CCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHHH--H
Q 018211 14 ARDSVAIRA---------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF--V 82 (359)
Q Consensus 14 ~p~~~ai~~---------~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~~--~ 82 (359)
.|+.+|++. ++-.+|.+.+...+...... .++.++|++....+-...+ .
T Consensus 182 ~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~--------------------~~~~~~~~~l~~~p~~~~~~~~ 241 (617)
T 3rg2_A 182 PADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEI--------------------CQFTQQTRYLCAIPAAHNYAMS 241 (617)
T ss_dssp CTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHH--------------------HTCCTTCEEEECSCTTSHHHHH
T ss_pred CCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHh--------------------cCCCCcceEEEeccchhhhhhh
Confidence 356777653 13578998888776665443 3678899999888855333 2
Q ss_pred H-HHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHHH
Q 018211 83 A-GVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQ 130 (359)
Q Consensus 83 ~-~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 130 (359)
. ..++.+..|+..+..+. .....+...+++.++.++.........+.
T Consensus 242 ~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 289 (617)
T 3rg2_A 242 SPGSLGVFLAGGTVVLAAD-PSATLCFPLIEKHQVNVTALVPPAVSLWL 289 (617)
T ss_dssp SSHHHHHHHHTCEEEECSS-CCHHHHHHHHHHTTCCEEEECHHHHHHHH
T ss_pred HHHHHHHHHcCCEEEEeCC-CCHHHHHHHHHHhCCcEEEcchHHHHHHH
Confidence 2 47888888998887654 56777788899999999888776555443
No 57
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=59.84 E-value=22 Score=33.21 Aligned_cols=95 Identities=18% Similarity=0.105 Sum_probs=67.2
Q ss_pred CCCceEEee---------CCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCH-HHHH
Q 018211 14 ARDSVAIRA---------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF-EFVA 83 (359)
Q Consensus 14 ~p~~~ai~~---------~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~-~~~~ 83 (359)
.|+.+|++. .+-.+|++.+...+...... .++.++|++....|-+. ..+.
T Consensus 142 ~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~--------------------~~~~~~d~~l~~~p~~~~~~~~ 201 (512)
T 3fce_A 142 KGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVED--------------------FNLQTGQVFLNQAPFSFDLSVM 201 (512)
T ss_dssp CTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHH--------------------TTCCSSCEEEECSCTTSGGGHH
T ss_pred CCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHh--------------------cCCCCCCEEEEeCCccHhHHHH
Confidence 456667653 12578998888766555433 47788999999888653 2344
Q ss_pred HHHHHHHhCCeeeecCCC--CCHHHHHHHHhhCCceEEEeccccHHH
Q 018211 84 GVLGTWFSGCIAVPLALS--YPESELLHVMHDSDISMVLSTEDYREV 128 (359)
Q Consensus 84 ~~lA~~~~G~~~v~l~~~--~~~~~l~~~l~~~~~~~vi~~~~~~~~ 128 (359)
..++.+..|+..+.++.. ..++.+...+++.++.+++........
T Consensus 202 ~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ 248 (512)
T 3fce_A 202 DIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEM 248 (512)
T ss_dssp HHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHH
T ss_pred HHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHH
Confidence 577888899998887653 467778888899999988877655444
No 58
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=58.69 E-value=27 Score=32.49 Aligned_cols=96 Identities=16% Similarity=0.016 Sum_probs=67.3
Q ss_pred CCCceEEee---------CCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCH-HHHH
Q 018211 14 ARDSVAIRA---------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF-EFVA 83 (359)
Q Consensus 14 ~p~~~ai~~---------~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~-~~~~ 83 (359)
.++.+|++. .+-.+|.+.+...+..+... .++.++|++....|-+. -.+.
T Consensus 141 ~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~--------------------~~~~~~d~~l~~~p~~~~~~~~ 200 (511)
T 3e7w_A 141 KEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICAD--------------------FPVSGGKIFLNQAPFSFDLSVM 200 (511)
T ss_dssp CTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHH--------------------STTTTTCEEEECSCTTSTHHHH
T ss_pred CCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHh--------------------cCCCccceEEEeCCccHHHHHH
Confidence 356666653 12578998888776655433 36788999998887663 3345
Q ss_pred HHHHHHHhCCeeeecCCC--CCHHHHHHHHhhCCceEEEeccccHHHH
Q 018211 84 GVLGTWFSGCIAVPLALS--YPESELLHVMHDSDISMVLSTEDYREVL 129 (359)
Q Consensus 84 ~~lA~~~~G~~~v~l~~~--~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 129 (359)
.+++++..|+..+..+.. ..++.+...+++.++.+++........+
T Consensus 201 ~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 248 (511)
T 3e7w_A 201 DLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMC 248 (511)
T ss_dssp HHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHH
T ss_pred HHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHH
Confidence 578888999988876543 4667788888899999888776655443
No 59
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=58.67 E-value=28 Score=33.00 Aligned_cols=96 Identities=11% Similarity=0.051 Sum_probs=66.5
Q ss_pred CCCCceEEee---------CCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCHHH--
Q 018211 13 MARDSVAIRA---------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSFEF-- 81 (359)
Q Consensus 13 ~~p~~~ai~~---------~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~~~-- 81 (359)
..|+.+|++. ++-.+|.+.+...+...... .++.++|++....|-.-.+
T Consensus 164 ~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~--------------------~~~~~~d~~l~~~p~~h~~g~ 223 (590)
T 3kxw_A 164 IKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTS--------------------FHMNDETIIFSWLPPHHDMGL 223 (590)
T ss_dssp CCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHH--------------------TTCCTTCEEEECSCTTSHHHH
T ss_pred CCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHh--------------------hCCCCcCeEEEecCCCcchhh
Confidence 3467777763 13578999998877766543 4778899999988877433
Q ss_pred HHHHHHHHHhCCeeeecCCCC---CHHHHHHHHhhCCceEEEeccccHHH
Q 018211 82 VAGVLGTWFSGCIAVPLALSY---PESELLHVMHDSDISMVLSTEDYREV 128 (359)
Q Consensus 82 ~~~~lA~~~~G~~~v~l~~~~---~~~~l~~~l~~~~~~~vi~~~~~~~~ 128 (359)
...+++.+..|++.+...+.. .+..+...+++.++.++.........
T Consensus 224 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~ 273 (590)
T 3kxw_A 224 IGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDY 273 (590)
T ss_dssp HTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHH
T ss_pred HHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHH
Confidence 333788888999888776532 45667777888888877765544443
No 60
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=56.88 E-value=3 Score=40.18 Aligned_cols=31 Identities=19% Similarity=0.253 Sum_probs=26.4
Q ss_pred CCCCCcEEEEecCCCC-CCcchhhhhhhHHHH
Q 018211 167 QRGEDPALIVYTSGTT-GKPKGVVHTHKSIDA 197 (359)
Q Consensus 167 ~~~~~~~~i~~TSGtT-G~pK~v~~s~~~l~~ 197 (359)
..++.+..+..||||| |+||.+.+|...+-.
T Consensus 96 l~~~~i~~f~~SSGTT~gk~K~IP~t~~~l~~ 127 (609)
T 4b2g_A 96 LSAHPISEFLTSSGTSAGERKLMPTIQEELDR 127 (609)
T ss_dssp SCSSCCCEEEEEEEEETTEEEEEEECTTHHHH
T ss_pred cCCCCCCeEEeCCCCCCCCceeeecCHHHHHH
Confidence 3457778999999999 889999999998765
No 61
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=56.41 E-value=28 Score=32.59 Aligned_cols=83 Identities=12% Similarity=0.085 Sum_probs=60.8
Q ss_pred hhhhhHHHHHHHHHHHh---hccCCCceEEEecCchhhHHHHHHHHHhhhcCcEEEEcCC-CChhHHHHHHHhhcCCCCC
Q 018211 189 VHTHKSIDAQVQMLTEA---WEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPK-FSVRGIWQRWRESYPVNGN 264 (359)
Q Consensus 189 ~~s~~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~~~~~-~~~~~~~~~~~~~~~~~~~ 264 (359)
.+|++.+...+..+... .|..++|++...++-+... +..+++++..|+..+..+. +..+++...
T Consensus 48 ~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~--~~~~lA~~~~G~~~vpl~~~~~~~~l~~~---------- 115 (529)
T 2v7b_A 48 STTYGELEERARRFASALRTLGVHPEERILLVMLDTVAL--PVAFLGALYAGVVPVVANTLLTPADYVYM---------- 115 (529)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHH--HHHHHHHHHHTCEEEECCTTCCHHHHHHH----------
T ss_pred CccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH--HHHHHHHHHcCceEEecCcccCHHHHHHH----------
Confidence 58999988877766554 4788999999999887543 3468999999999998875 455555555
Q ss_pred CCCCcceeeecchHHHHHH
Q 018211 265 RAGEAITAFTGVPTMYTRL 283 (359)
Q Consensus 265 i~~~~vt~~~~~P~~~~~l 283 (359)
++..++..++..+.....+
T Consensus 116 l~~~~~~~vi~~~~~~~~~ 134 (529)
T 2v7b_A 116 LTHSHARAVIASGALVQNV 134 (529)
T ss_dssp HHHHTCSEEEEEGGGHHHH
T ss_pred HhccCCeEEEechhhhhHH
Confidence 5566788887776655443
No 62
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=54.55 E-value=97 Score=27.07 Aligned_cols=60 Identities=10% Similarity=-0.109 Sum_probs=44.8
Q ss_pred CCCCCeEEEEcCCCHHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccc
Q 018211 65 GGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTED 124 (359)
Q Consensus 65 v~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 124 (359)
+++|+.|.+....+-.-....+++.+.|..++.+-|...+......++..++.+++++..
T Consensus 68 l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 68 LIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAA 127 (334)
T ss_dssp CCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred CCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 478888655556678888888889999986665545544555567789999999999754
No 63
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=54.02 E-value=38 Score=32.23 Aligned_cols=94 Identities=15% Similarity=0.109 Sum_probs=65.8
Q ss_pred CCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHh---hccCCCceEEEecCchhhHHHHHHHHHhhhcCcEEEEcC
Q 018211 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA---WEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP 244 (359)
Q Consensus 168 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~~~~ 244 (359)
.++.+|++..... | ....+|.+.+...+..+... .|..++|++...+|-+.. ++..+++++..|+..+..+
T Consensus 69 ~pd~~Al~~~~~~--g--~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e--~~~~~lA~~~~Gav~vpl~ 142 (580)
T 3etc_A 69 SPEKLAMIWCDDY--G--NEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYD--FWYCMLGLHKLGAIAVPAT 142 (580)
T ss_dssp CTTCEEEEEEESS--S--CEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTH--HHHHHHHHHHHTCEEEECC
T ss_pred CCCCEEEEEEcCC--C--CEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHH--HHHHHHHHHhCCEEEEeCC
Confidence 5677787764321 2 23468899888777666554 488899999999987754 3456899999999999887
Q ss_pred C-CChhHHHHHHHhhcCCCCCCCCCcceeeecch
Q 018211 245 K-FSVRGIWQRWRESYPVNGNRAGEAITAFTGVP 277 (359)
Q Consensus 245 ~-~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P 277 (359)
. +..+++... ++..++..++..+
T Consensus 143 ~~~~~~~l~~~----------l~~~~~~~ii~~~ 166 (580)
T 3etc_A 143 HMLKTRDIVYR----------IEKAGLKMIVCIA 166 (580)
T ss_dssp TTCCHHHHHHH----------HHHHTCCEEEEES
T ss_pred ccCCHHHHHHH----------HHhcCCCEEEEec
Confidence 5 455555555 5556777776644
No 64
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=53.37 E-value=74 Score=27.98 Aligned_cols=83 Identities=14% Similarity=0.018 Sum_probs=56.9
Q ss_pred ccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCC-HHHHHHHHHHHHhCCeeeecCCCCC
Q 018211 25 KSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS-FEFVAGVLGTWFSGCIAVPLALSYP 103 (359)
Q Consensus 25 ~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~-~~~~~~~lA~~~~G~~~v~l~~~~~ 103 (359)
-.+|++.+...+..++.. .++.++|++...+|-. ...+..++..+..|+..+...+...
T Consensus 55 V~~th~~l~~~~~~~~~~--------------------~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~~~ 114 (358)
T 4gs5_A 55 ITVTRAQLAASAAMTGKA--------------------LSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPTAN 114 (358)
T ss_dssp EEEEHHHHHHHHHHHHHH--------------------TTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCCSC
T ss_pred EEEeHHHHHHHHHHHHHH--------------------hCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcccc
Confidence 579999988777665543 4778999999888765 3334455666777887777665433
Q ss_pred HHHHHHHHhhCCceEEEeccccHHHHH
Q 018211 104 ESELLHVMHDSDISMVLSTEDYREVLQ 130 (359)
Q Consensus 104 ~~~l~~~l~~~~~~~vi~~~~~~~~~~ 130 (359)
. ...+++.++.++.........+.
T Consensus 115 ~---~~~i~~~~~t~~~~~P~~l~~ll 138 (358)
T 4gs5_A 115 P---LAGLDHADFDFVAMVPMQLQSIL 138 (358)
T ss_dssp T---TTTCSSCCCSEEEECHHHHHHHH
T ss_pred H---HHHHHHhCCeEEEcChHHHHHhh
Confidence 2 34577888888887765554443
No 65
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=51.90 E-value=29 Score=32.95 Aligned_cols=100 Identities=16% Similarity=0.136 Sum_probs=68.3
Q ss_pred CCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHh---h-ccCCCceEEEecCchhhHHHHHHHHHhhhcCcEEEEc
Q 018211 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA---W-EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFM 243 (359)
Q Consensus 168 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~-~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~~~ 243 (359)
.++.++++.... .| ....+|++.+...+..+... . |..++|++...+|-+... +..+++++..|+..+..
T Consensus 56 ~p~~~al~~~~~--~g--~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~--~~~~lA~~~~Ga~~vpl 129 (570)
T 3c5e_A 56 RPPSPALWWVNG--KG--KELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEW--WLVILGCIRAGLIFMPG 129 (570)
T ss_dssp SCCCEEEEEECS--SS--CEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHH--HHHHHHHHHHTCEEEEC
T ss_pred CCCceEEEEEcC--CC--ceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHH--HHHHHHHHHcCeEEEec
Confidence 556777765421 12 12468999988777665544 3 788999999999877543 44689999999999988
Q ss_pred CC-CChhHHHHHHHhhcCCCCCCCCCcceeeecchHHHHHH
Q 018211 244 PK-FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMYTRL 283 (359)
Q Consensus 244 ~~-~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l 283 (359)
+. +..+.+... ++..++..++..+.....+
T Consensus 130 ~~~~~~~~l~~~----------l~~~~~~~vi~~~~~~~~~ 160 (570)
T 3c5e_A 130 TIQMKSTDILYR----------LQMSKAKAIVAGDEVIQEV 160 (570)
T ss_dssp CTTCCHHHHHHH----------HHHHTCSEEEEETTTHHHH
T ss_pred CCCCCHHHHHHH----------HHhcCCeEEEechHHHHHH
Confidence 75 445555544 5566788887766655444
No 66
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=51.79 E-value=49 Score=31.29 Aligned_cols=89 Identities=16% Similarity=0.073 Sum_probs=61.1
Q ss_pred CCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHh---hccCCCceEEEecCchhhHHHHHHHHHhhhcCcEEEEcC
Q 018211 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA---WEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP 244 (359)
Q Consensus 168 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~~~~ 244 (359)
.++.++++. . +-.+|++.+...+..+... .|..++|++...+|-+... +..+++++..|+..+..+
T Consensus 88 ~pd~~A~~~-~--------~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~--~~~~lA~~~~G~~~vpl~ 156 (570)
T 4gr5_A 88 APDAVALLH-E--------ADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDM--VVALLAVLKAGGGYTMLD 156 (570)
T ss_dssp CTTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH--HHHHHHHHHTTCEEEECC
T ss_pred CCCCeEEEC-C--------CCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH--HHHHHHHHHHCCEEEEcC
Confidence 456666653 1 1258999988877766554 4788999999999887544 346899999999999887
Q ss_pred C-CChhHHHHHHHhhcCCCCCCCCCcceeeecch
Q 018211 245 K-FSVRGIWQRWRESYPVNGNRAGEAITAFTGVP 277 (359)
Q Consensus 245 ~-~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P 277 (359)
. ...+.+... ++..++..++...
T Consensus 157 ~~~~~~~l~~~----------l~~~~~~~~i~~~ 180 (570)
T 4gr5_A 157 PQFPVERLALS----------LEDTGAPLLVTSR 180 (570)
T ss_dssp TTSCHHHHHHH----------HHHHTCSEEEECT
T ss_pred CCChHHHHHHH----------HHhcCCCEEEecc
Confidence 5 445555444 4445566555543
No 67
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=49.83 E-value=45 Score=34.04 Aligned_cols=95 Identities=17% Similarity=0.169 Sum_probs=66.9
Q ss_pred CCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHh---hccCCCceEEEecCchhhHHHHHHHHHhhhcCcEEEEc
Q 018211 167 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA---WEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFM 243 (359)
Q Consensus 167 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~~~ 243 (359)
..++.++++...+| -.+|++.+...+..+... .|..++|++...+|-+.. ++..+++++..|+..+..
T Consensus 73 ~~pd~~Al~~~~~~-------~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e--~~v~~lA~~~~Ga~~vpl 143 (979)
T 3tsy_A 73 EFATKPCLINGPTG-------HVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPE--FVLSFLAASFRGATATAA 143 (979)
T ss_dssp GTTTSEEEEETTTC-------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHH--HHHHHHHHHHHTCEEEEE
T ss_pred hCCCCeEEEECCCC-------cEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHH--HHHHHHHHHHcCCEEEee
Confidence 34677777643222 358999888877666554 478899999999998743 345689999999999988
Q ss_pred CC-CChhHHHHHHHhhcCCCCCCCCCcceeeecchHHH
Q 018211 244 PK-FSVRGIWQRWRESYPVNGNRAGEAITAFTGVPTMY 280 (359)
Q Consensus 244 ~~-~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~ 280 (359)
+. +.++.+... ++..++..++..+...
T Consensus 144 ~~~~~~~~l~~~----------l~~~~~~~vi~~~~~~ 171 (979)
T 3tsy_A 144 NPFFTPAEIAKQ----------AKASNTKLIITEARYV 171 (979)
T ss_dssp CTTSCHHHHHHH----------HHHHTEEEEEECSTTT
T ss_pred CCCCCHHHHHHH----------HHHcCCeEEEEChHHH
Confidence 74 455555555 5666788777765543
No 68
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=49.71 E-value=95 Score=28.71 Aligned_cols=95 Identities=11% Similarity=0.064 Sum_probs=64.9
Q ss_pred CCCCceEEee---------CCccccHHHHHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCCH--HH
Q 018211 13 MARDSVAIRA---------DQKSYSYDQLASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPSF--EF 81 (359)
Q Consensus 13 ~~p~~~ai~~---------~~~~~Ty~el~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~~--~~ 81 (359)
..|+.+|++. ++-.+|...+...+..+...+ ++.++|++....+-.- .+
T Consensus 152 ~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~--------------------~~~~~d~~l~~~p~~~~~g~ 211 (505)
T 3nyq_A 152 ADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW--------------------QWTGEDVLVQGLPLFHVHGL 211 (505)
T ss_dssp CCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH--------------------TCCTTCEEEECCCTTSHHHH
T ss_pred CCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh--------------------CCCCCcEEEEeccHHHHHHH
Confidence 3456677663 125789999888877665544 6678999888777542 23
Q ss_pred HHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHH
Q 018211 82 VAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129 (359)
Q Consensus 82 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 129 (359)
+..+++.+..|+..+... ....+.+...+ +.++.+++........+
T Consensus 212 ~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i-~~~~t~~~~~P~~~~~l 257 (505)
T 3nyq_A 212 VLGILGPLRRGGSVRHLG-RFSTEGAAREL-NDGATMLFGVPTMYHRI 257 (505)
T ss_dssp TTTTHHHHHHTCEEEECS-SCCHHHHHHHH-TTTCCEEEECHHHHHHH
T ss_pred HHHHHHHHhcCCEEEECC-CCChHHHHHHH-hhCCeEEEehHHHHHHH
Confidence 345788889999988764 46666666666 66888888766554443
No 69
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=49.25 E-value=58 Score=31.59 Aligned_cols=96 Identities=18% Similarity=0.161 Sum_probs=66.2
Q ss_pred CCCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHH----hhccCCCceEEEecCchhhHHHHHHHHHhhhcCcEEEE
Q 018211 167 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTE----AWEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEF 242 (359)
Q Consensus 167 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~----~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~~ 242 (359)
..++.+|++.... ..| ....+|.+.|...+..+.. ..|..++|++...+|.+--. +..+++++..|+..+.
T Consensus 94 ~~pd~~Al~~~~~-~~~--~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~--v~a~lA~~~~Gav~vp 168 (663)
T 1ry2_A 94 KTPNKKAIIFEGD-EPG--QGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEA--IITLLAISRIGAIHSV 168 (663)
T ss_dssp TCTTSEEEEEECS-STT--CCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHH--HHHHHHHHHTTCEEEE
T ss_pred cCCCceEEEEEcC-CCC--ceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHH--HHHHHHHHHcCCEEEe
Confidence 3567777775432 122 2246899988876666554 45778999999999987543 3468999999999988
Q ss_pred cC-CCChhHHHHHHHhhcCCCCCCCCCcceeeecch
Q 018211 243 MP-KFSVRGIWQRWRESYPVNGNRAGEAITAFTGVP 277 (359)
Q Consensus 243 ~~-~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P 277 (359)
.. .+.++.+... +...++..++..+
T Consensus 169 l~~~~~~~~l~~~----------l~~~~~~~li~~~ 194 (663)
T 1ry2_A 169 VFAGFSSNSLRDR----------INDGDSKVVITTD 194 (663)
T ss_dssp CCTTSCHHHHHHH----------HHHHTCSEEEEES
T ss_pred eCCCCCHHHHHHH----------HHhcCCeEEEEcc
Confidence 86 5666766666 5556667666544
No 70
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=48.62 E-value=4.9 Score=38.53 Aligned_cols=31 Identities=29% Similarity=0.454 Sum_probs=25.9
Q ss_pred CCCCCcEEEEecCCCC-CCcchhhhhhhHHHH
Q 018211 167 QRGEDPALIVYTSGTT-GKPKGVVHTHKSIDA 197 (359)
Q Consensus 167 ~~~~~~~~i~~TSGtT-G~pK~v~~s~~~l~~ 197 (359)
..++.+.+...||||| |++|-+.+|...+-.
T Consensus 95 L~~~pi~~f~~SSGTT~gk~K~IP~T~~~l~~ 126 (581)
T 4epl_A 95 LTGHPVPAISLSSGTSQGRPKFIPFTDELMEN 126 (581)
T ss_dssp SSSSCCSEEEEEEEEETTEEEEEEECHHHHHH
T ss_pred cCCCCcceEEecCCCCCCCccccccCHHHHHH
Confidence 3456778899999999 889999999987755
No 71
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=46.07 E-value=39 Score=32.68 Aligned_cols=94 Identities=15% Similarity=0.106 Sum_probs=63.9
Q ss_pred CCCCcEEEEecCCCCCCcchhhhhhhHHHHHHHHHHHh---hccCCCceEEEecCchhhHHHHHHHHHhhhcCcEEEEcC
Q 018211 168 RGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEA---WEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMP 244 (359)
Q Consensus 168 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~~~~ 244 (359)
.++.+|++.... .+| ..-.+|++.|...+..+... .|..++|++...+|.+--. +..+++++..|+..+..+
T Consensus 89 ~pd~~Al~~~~~-~~~--~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~--vva~lA~~~~Gav~vpl~ 163 (652)
T 1pg4_A 89 NGDRTAIIWEGD-DTS--QSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEA--AVAMLACARIGAVHSVIF 163 (652)
T ss_dssp HTTSEEEEEECS-STT--CEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHH--HHHHHHHHHHTCEEEECC
T ss_pred CCCceEEEEEcC-CCC--ceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH--HHHHHHHHHcCcEEEecC
Confidence 356677764322 222 22468999988877666554 4788999999999987543 446899999999998886
Q ss_pred -CCChhHHHHHHHhhcCCCCCCCCCcceeeecc
Q 018211 245 -KFSVRGIWQRWRESYPVNGNRAGEAITAFTGV 276 (359)
Q Consensus 245 -~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~ 276 (359)
.+.++.+... +...++..++..
T Consensus 164 ~~~~~~~l~~~----------l~~~~~~~li~~ 186 (652)
T 1pg4_A 164 GGFSPEAVAGC----------IIDSSSRLVITA 186 (652)
T ss_dssp TTSCHHHHHHH----------HHHHTCSEEEEE
T ss_pred CCCCHHHHHHH----------HHhcCCCEEEEc
Confidence 4666666665 444555655543
No 72
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=39.93 E-value=75 Score=29.80 Aligned_cols=84 Identities=11% Similarity=0.007 Sum_probs=59.5
Q ss_pred hhhhhhHHHHHHHHHHHh---hccCCCceEEEecCchhhHHHHHHHHHhhhcCcEEEEcCC-CC-------hhHHHHHHH
Q 018211 188 VVHTHKSIDAQVQMLTEA---WEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPK-FS-------VRGIWQRWR 256 (359)
Q Consensus 188 v~~s~~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~~~~~-~~-------~~~~~~~~~ 256 (359)
-.+|++.+...+..+... .|..++|++...+|-+... +..+++++..|+..+..+. +. .+.+...
T Consensus 48 ~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~--~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~-- 123 (576)
T 3gqw_A 48 DQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEF--VEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGL-- 123 (576)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHH--HHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHH--
T ss_pred eEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH--HHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHH--
Confidence 468999998877766554 4788999999999987543 4568999999999998864 22 2333333
Q ss_pred hhcCCCCCCCCCcceeeecchHHHHHH
Q 018211 257 ESYPVNGNRAGEAITAFTGVPTMYTRL 283 (359)
Q Consensus 257 ~~~~~~~~i~~~~vt~~~~~P~~~~~l 283 (359)
+...++..+.........+
T Consensus 124 --------l~~~~~~~ii~~~~~~~~~ 142 (576)
T 3gqw_A 124 --------LASCQPAAIITGDEWLPLV 142 (576)
T ss_dssp --------HHHHCCSEEEECGGGHHHH
T ss_pred --------HHhcCCCEEEecHHHHHHH
Confidence 5556777777766655544
No 73
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=39.01 E-value=51 Score=30.67 Aligned_cols=76 Identities=7% Similarity=-0.058 Sum_probs=53.8
Q ss_pred hhhhhHHHHHHHHHHHh---hccCCCceEEEecCchhhHHHHHHHHHhhhcCcEEEEcCC-CChhHHHHHHHhhcCCCCC
Q 018211 189 VHTHKSIDAQVQMLTEA---WEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPK-FSVRGIWQRWRESYPVNGN 264 (359)
Q Consensus 189 ~~s~~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~~~~~-~~~~~~~~~~~~~~~~~~~ 264 (359)
.+|++.+...+..+... .+..++|++...++-+.. ++..+++++..|+..+..+. ...+.+...
T Consensus 29 ~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~--~~~~~lA~~~~G~v~vpl~~~~~~~~l~~i---------- 96 (521)
T 3l8c_A 29 RRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYD--MLATFVALTKSGHAYIPVDVHSAPERILAI---------- 96 (521)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHH--HHHHHHHHHHTTCCEEEEETTSCHHHHHHH----------
T ss_pred eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHH--HHHHHHHHHHhCCEEEecCccccHHHHHHH----------
Confidence 47899988877766554 478899999988887653 34568999999999998864 455555554
Q ss_pred CCCCcceeeecc
Q 018211 265 RAGEAITAFTGV 276 (359)
Q Consensus 265 i~~~~vt~~~~~ 276 (359)
++..++..++..
T Consensus 97 l~~~~~~~ii~~ 108 (521)
T 3l8c_A 97 IEIAKPSLIIAI 108 (521)
T ss_dssp HHHSCCSEEEES
T ss_pred HHhCCCCEEEec
Confidence 444566655543
No 74
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=38.08 E-value=1.6e+02 Score=23.82 Aligned_cols=89 Identities=9% Similarity=-0.050 Sum_probs=0.0
Q ss_pred CCCceEEEecCch-hhHHHHHHHHHhhhcCcEEEEcC-CCChhHHHHHHHhhcCCCCCCCCCcceeeec-----------
Q 018211 209 TSADQFLHCLPLH-HVHGLFNALLAPLYAGATVEFMP-KFSVRGIWQRWRESYPVNGNRAGEAITAFTG----------- 275 (359)
Q Consensus 209 ~~~d~~l~~~pl~-h~~~~~~~~~~~l~~G~~i~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~----------- 275 (359)
..+.+++.+.+-- |..|...--..--..|..++... ...++++.+. +.++++..+.+
T Consensus 91 ~~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~----------~~~~~~d~v~l~~S~l~~~~~~ 160 (215)
T 3ezx_A 91 EAGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEE----------AAKHKGEKVLLVGSALMTTSML 160 (215)
T ss_dssp -CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHH----------HHHTTTSCEEEEEECSSHHHHT
T ss_pred CCCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHH----------HHHcCCCEEEEEchhcccCcHH
Q ss_pred -chHHHHHHHhhhh--hhhHHHHHHHHhhhccceEEEecCCCCCHHHHHHH
Q 018211 276 -VPTMYTRLIQGYE--AMDTELQAASASAAKQLRLMMCGSSALPLPVMQQW 323 (359)
Q Consensus 276 -~P~~~~~l~~~~~--~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~ 323 (359)
.+.+.+.+.+... ..+ +++||.+++++..+.+
T Consensus 161 ~~~~~i~~l~~~~~~~~v~----------------v~vGG~~~~~~~a~~i 195 (215)
T 3ezx_A 161 GQKDLMDRLNEEKLRDSVK----------------CMFGGAPVSDKWIEEI 195 (215)
T ss_dssp HHHHHHHHHHHTTCGGGSE----------------EEEESSSCCHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCE----------------EEEECCCCCHHHHHHh
No 75
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=36.96 E-value=78 Score=30.37 Aligned_cols=64 Identities=9% Similarity=-0.040 Sum_probs=48.0
Q ss_pred hhhhhHHHHHHHHHHHh---hccCCCceEEEecCchhhHHHHHHHHHhhhcCcEEEEcCCCChhHHHHH
Q 018211 189 VHTHKSIDAQVQMLTEA---WEYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEFMPKFSVRGIWQR 254 (359)
Q Consensus 189 ~~s~~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~~ 254 (359)
.+|++.+...+..+... .|..++|++...++-+... +..+++++..|+..+..+...+...++.
T Consensus 52 ~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~--vva~lailkaGa~~vpld~~~p~~~l~~ 118 (620)
T 4dg8_A 52 SVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRES--ITCLLAILLSGHHYLYIDLKQPAAWNAE 118 (620)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHH--HHHHHHHHHTTCEEEECCTTSCHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH--HHHHHHHHHhCCEEEeeCccChHHHHHH
Confidence 48999988777666554 4788999999999877543 4568999999999999986544444333
No 76
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=34.77 E-value=1.5e+02 Score=25.64 Aligned_cols=56 Identities=9% Similarity=0.053 Sum_probs=39.1
Q ss_pred ccCCCCCeEEEEcCCCHHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEe
Q 018211 63 LAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLS 121 (359)
Q Consensus 63 ~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 121 (359)
.++++|++|+|+..-+.-.+++.++....|+.++.++.+ ++ -..+.++.++..++-
T Consensus 159 ~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~--~~-r~~~~~~~Ga~~~i~ 214 (348)
T 4eez_A 159 SGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDIN--QD-KLNLAKKIGADVTIN 214 (348)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESC--HH-HHHHHHHTTCSEEEE
T ss_pred cCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECc--HH-HhhhhhhcCCeEEEe
Confidence 689999999999886666666666666667766655433 33 345667788887764
No 77
>2ayi_A Aminopeptidase T; metallopeptidase, hydrolase; 3.70A {Thermus thermophilus} SCOP: e.60.1.1
Probab=32.51 E-value=91 Score=28.27 Aligned_cols=51 Identities=10% Similarity=-0.061 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCC--HHHHHHHHHHHHhCCeeeec
Q 018211 33 ASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS--FEFVAGVLGTWFSGCIAVPL 98 (359)
Q Consensus 33 ~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~--~~~~~~~lA~~~~G~~~v~l 98 (359)
..+.+++|..+.+.| .++++|+.|.|..+.. +-.-...-++.++|+-++.+
T Consensus 5 ~~~l~k~A~~~v~~~---------------~~lq~Ge~vlI~~~~~~~~l~r~l~~~a~~~Ga~~v~v 57 (408)
T 2ayi_A 5 KRNLEKLAELAIRVG---------------LNLEKGQEVIATAPIEAVDFVRLLAEKAYREGASLFTV 57 (408)
T ss_dssp HHHHHHHHHHHHHTT---------------TCCCTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHHHhC---------------cCCCCCCEEEEEECCchHHHHHHHHHHHHHcCCceEEE
Confidence 456777888888765 5999999999999865 33344555788899977754
No 78
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Probab=32.38 E-value=1.2e+02 Score=26.41 Aligned_cols=59 Identities=10% Similarity=-0.090 Sum_probs=38.8
Q ss_pred ccCCCCCeEEEEcCCC-HHHHHHHHHHHHhCCeee-ecCCCCCHHHHHHHHhhCCceEEEec
Q 018211 63 LAGGCGARIGIVAKPS-FEFVAGVLGTWFSGCIAV-PLALSYPESELLHVMHDSDISMVLST 122 (359)
Q Consensus 63 ~gv~~gd~V~i~~~n~-~~~~~~~lA~~~~G~~~v-~l~~~~~~~~l~~~l~~~~~~~vi~~ 122 (359)
.++++|++|+|+...+ .-.++..+| ...|+..+ ..+..-..++....+++.++..++..
T Consensus 163 ~~~~~g~~VlV~Ga~G~vG~~aiqla-k~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~ 223 (357)
T 1zsy_A 163 EQLQPGDSVIQNASNSGVGQAVIQIA-AALGLRTINVVRDRPDIQKLSDRLKSLGAEHVITE 223 (357)
T ss_dssp SCCCTTCEEEESSTTSHHHHHHHHHH-HHHTCEEEEEECCCSCHHHHHHHHHHTTCSEEEEH
T ss_pred hccCCCCEEEEeCCcCHHHHHHHHHH-HHcCCEEEEEecCccchHHHHHHHHhcCCcEEEec
Confidence 4789999999999855 455555554 45788544 44444344445556778888877743
No 79
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=32.14 E-value=2.6e+02 Score=24.43 Aligned_cols=60 Identities=15% Similarity=0.006 Sum_probs=46.9
Q ss_pred CCCCCeEEEEcCCCHHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccc
Q 018211 65 GGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTED 124 (359)
Q Consensus 65 v~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 124 (359)
+.+|++..+....+-.-+...+++.++|..++.+=|...+.+....++..++++++++..
T Consensus 83 l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~~ 142 (344)
T 3vc3_A 83 ITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPA 142 (344)
T ss_dssp CCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred CCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECCC
Confidence 577877667777788888899999999986666655555566677899999999998753
No 80
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=31.53 E-value=1.9e+02 Score=24.93 Aligned_cols=72 Identities=17% Similarity=0.170 Sum_probs=42.1
Q ss_pred CeEEEEcCCCHHHHHHHHHHHHhCCeeeecCCCCCHHHHHHH---HhhCCceEEEeccccHH-HHHHHhhhcCCce
Q 018211 69 ARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHV---MHDSDISMVLSTEDYRE-VLQNVASKSGAKF 140 (359)
Q Consensus 69 d~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~---l~~~~~~~vi~~~~~~~-~~~~~~~~~~~~~ 140 (359)
.+..+..++...++.-.+++-..|..-+--...-++.++..+ +++.++++||++..... .+..+.+..+.++
T Consensus 190 ~~~~v~~H~af~Yfa~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~~~~~~~~~ia~e~g~~v 265 (312)
T 2o1e_A 190 KKEFITQHTAFGYLAKEYGLKQVPIAGLSPDQEPSAASLAKLKTYAKEHNVKVIYFEEIASSKVADTLASEIGAKT 265 (312)
T ss_dssp CCEEEESSCTTHHHHHHTTCEEEECSSCCSSSCCCHHHHHHHHHHTTSSCCCEEECSSCCCHHHHHHHHHHTCCEE
T ss_pred CCEEEEECCchHHHHHHCCCeEEEeeccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHhCCcE
Confidence 355667788888887777666554322111233456665555 45678899998875543 3444444444444
No 81
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=30.97 E-value=1.9e+02 Score=25.02 Aligned_cols=55 Identities=13% Similarity=0.003 Sum_probs=37.7
Q ss_pred CCCCCeEEEEcCCCHHHHHHHHHHHHhCCeeeecCCC-------CCHHHHHHHHhhCCceEEEec
Q 018211 65 GGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALS-------YPESELLHVMHDSDISMVLST 122 (359)
Q Consensus 65 v~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~-------~~~~~l~~~l~~~~~~~vi~~ 122 (359)
.++||.|.+..+....+. .++...|+.++.++.. ...+++...+++.++++++..
T Consensus 106 ~~~gd~vl~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~ 167 (391)
T 3dzz_A 106 TSPGDQILVQEPVYNMFY---SVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFC 167 (391)
T ss_dssp SCTTCEEEECSSCCHHHH---HHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEE
T ss_pred CCCCCeEEECCCCcHHHH---HHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEE
Confidence 468898887766555433 3455678877766542 678888888876778877643
No 82
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A*
Probab=29.90 E-value=1.7e+02 Score=25.53 Aligned_cols=58 Identities=9% Similarity=-0.105 Sum_probs=40.4
Q ss_pred CCeEEEEcCCCHHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccH
Q 018211 68 GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR 126 (359)
Q Consensus 68 gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~ 126 (359)
++.|... ..+-.-....+++.+.|..++.+-|...+......++..++++++++..+.
T Consensus 76 ~~~vv~~-SsGNhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~v~~~~~ 133 (346)
T 3l6b_A 76 PKAVVTH-SSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPSDE 133 (346)
T ss_dssp CSCEEEE-CSSHHHHHHHHHHHHTTCCEEEEEETTSCHHHHHHHHHTTCEEEEECSSHH
T ss_pred CCEEEEe-CCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCHH
Confidence 3444333 456777777888999998665554555555667778999999999986543
No 83
>1zjc_A Aminopeptidase AMPS; metallopeptidase, hydrolase; 1.80A {Staphylococcus aureus subsp} SCOP: e.60.1.1
Probab=29.77 E-value=1e+02 Score=28.02 Aligned_cols=52 Identities=12% Similarity=-0.031 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhhCCCCCccccccccccccccCCCCCeEEEEcCCC--HHHHHHHHHHHHhCCeeeec
Q 018211 32 LASSALRISSLLCSNDLKTTSEKTKNENSAVLAGGCGARIGIVAKPS--FEFVAGVLGTWFSGCIAVPL 98 (359)
Q Consensus 32 l~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~gv~~gd~V~i~~~n~--~~~~~~~lA~~~~G~~~v~l 98 (359)
+..+..++|..|.+.| .++++|+.|.|..+-. +-.-...-++..+|+-++.+
T Consensus 7 ~~~~l~k~A~~lV~~~---------------~~lq~Ge~VlI~~~~~~~~l~r~l~~~a~~~Ga~~v~v 60 (418)
T 1zjc_A 7 YKEKLQQYAELLVKVG---------------MNVQPKQPVFIRSSVETLELTHLIVEEAYHCGASDVRV 60 (418)
T ss_dssp HHHHHHHHHHHHHHTT---------------TCCCTTCCEEEEEETTCHHHHHHHHHHHHHTTCCSEEE
T ss_pred hHHHHHHHHHHHHHhC---------------cCCCCCCEEEEEECCchHHHHHHHHHHHHHcCCceEEE
Confidence 3456777888888765 5999999999998865 33334555778899977753
No 84
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=28.61 E-value=2.3e+02 Score=24.65 Aligned_cols=60 Identities=15% Similarity=0.062 Sum_probs=35.3
Q ss_pred ccCCCCCeEEEEcCCCH------HHHHHHHH-HHHhCCeeeecCCCC--------C----HHHHHHHHhhCCceEEEec
Q 018211 63 LAGGCGARIGIVAKPSF------EFVAGVLG-TWFSGCIAVPLALSY--------P----ESELLHVMHDSDISMVLST 122 (359)
Q Consensus 63 ~gv~~gd~V~i~~~n~~------~~~~~~lA-~~~~G~~~v~l~~~~--------~----~~~l~~~l~~~~~~~vi~~ 122 (359)
.-+++||+|+|++|.+. +-+-.... +-..|..++.-..-. + .+++...+.+-+++.|++.
T Consensus 7 ~~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~ 85 (327)
T 4h1h_A 7 AKLKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTV 85 (327)
T ss_dssp CCCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEES
T ss_pred CCCCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEc
Confidence 36899999999999752 22222222 234566555432211 1 3356666677788888875
No 85
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=28.25 E-value=3.4e+02 Score=24.65 Aligned_cols=59 Identities=8% Similarity=-0.071 Sum_probs=43.6
Q ss_pred CCCCCeEEEEcCCCHHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEecc
Q 018211 65 GGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTE 123 (359)
Q Consensus 65 v~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 123 (359)
+.+|....+....+-.-....+++.+.|..++.+-|...+.+....++..++++++++.
T Consensus 171 l~~g~~~VV~aSsGNhG~AlA~aAa~~Gl~~~IvmP~~~s~~k~~~~r~~GAeVv~v~~ 229 (430)
T 4aec_A 171 ISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDP 229 (430)
T ss_dssp CCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred CCCCCcEEEEECCCHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHCCCEEEEECC
Confidence 36675555555668888888888999998666555555555666778999999999974
No 86
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=27.88 E-value=1.3e+02 Score=28.22 Aligned_cols=83 Identities=14% Similarity=0.057 Sum_probs=54.1
Q ss_pred CCCCcEEEEecCCCCCCc--chhhhhhhHHHHHHHHHHHhh---ccCCCceEEEecCchhhHHHHHHHHHhhhcCcEEEE
Q 018211 168 RGEDPALIVYTSGTTGKP--KGVVHTHKSIDAQVQMLTEAW---EYTSADQFLHCLPLHHVHGLFNALLAPLYAGATVEF 242 (359)
Q Consensus 168 ~~~~~~~i~~TSGtTG~p--K~v~~s~~~l~~~~~~~~~~~---~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~i~~ 242 (359)
.|+.++++... +..+.. ..-.+|++.+...+..+...+ +. ++|++...++-+... +..+++++..|+..+.
T Consensus 33 ~p~~~A~~~~~-~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~--~~~~lA~~~~Gav~vp 108 (562)
T 3ite_A 33 HPEWKAVEVAT-GFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIA--FAIIVGIMKSGNTYVP 108 (562)
T ss_dssp CTTSEEEEEEE-CC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHH--HHHHHHHHHTTCEEEE
T ss_pred CCCchhhhccc-ccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHH--HHHHHHHHHhCCEEEe
Confidence 45666666433 222222 124689999888777666543 56 699999999887543 4468999999999998
Q ss_pred cCC-CChhHHHHH
Q 018211 243 MPK-FSVRGIWQR 254 (359)
Q Consensus 243 ~~~-~~~~~~~~~ 254 (359)
.+. +..+.+...
T Consensus 109 l~~~~~~~~l~~~ 121 (562)
T 3ite_A 109 IEAGLPNDRKSFL 121 (562)
T ss_dssp CCTTSCHHHHHHH
T ss_pred cCCcCHHHHHHHH
Confidence 875 445555444
No 87
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=27.49 E-value=2.4e+02 Score=24.59 Aligned_cols=60 Identities=20% Similarity=0.189 Sum_probs=35.3
Q ss_pred ccCCCCCeEEEEcCCCH------HHHHHHHHHH-HhCCeeeecCCCC--------C----HHHHHHHHhhCCceEEEec
Q 018211 63 LAGGCGARIGIVAKPSF------EFVAGVLGTW-FSGCIAVPLALSY--------P----ESELLHVMHDSDISMVLST 122 (359)
Q Consensus 63 ~gv~~gd~V~i~~~n~~------~~~~~~lA~~-~~G~~~v~l~~~~--------~----~~~l~~~l~~~~~~~vi~~ 122 (359)
.-+++||+|+|++|.+. +-+-.....+ ..|..++.-.... + .+++...+.+-+++.|++.
T Consensus 8 ~~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~ 86 (336)
T 3sr3_A 8 KSLKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMST 86 (336)
T ss_dssp CCCCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEES
T ss_pred CCCCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEc
Confidence 36899999999999883 2222222222 3576655432111 1 2345666666777888865
No 88
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=27.47 E-value=2.1e+02 Score=24.34 Aligned_cols=55 Identities=9% Similarity=-0.067 Sum_probs=36.1
Q ss_pred ccCCCCCeEEEEcCCCHHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEe
Q 018211 63 LAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLS 121 (359)
Q Consensus 63 ~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 121 (359)
.++++|++|+|+...+.--..+...+...|+.++.+. +.++ ...+++.++..++.
T Consensus 148 ~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~---~~~~-~~~~~~lGa~~~i~ 202 (321)
T 3tqh_A 148 AEVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTA---SKRN-HAFLKALGAEQCIN 202 (321)
T ss_dssp TTCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE---CHHH-HHHHHHHTCSEEEE
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEe---ccch-HHHHHHcCCCEEEe
Confidence 6899999999997555444444444456798766553 3444 45566777776654
No 89
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=27.47 E-value=1.3e+02 Score=25.99 Aligned_cols=56 Identities=11% Similarity=-0.025 Sum_probs=34.8
Q ss_pred CCCCeEEEEcCCCHHHHHHHHHHHHhCCeeeecCCC----CCHHHHHHHHhhCCceEEEec
Q 018211 66 GCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALS----YPESELLHVMHDSDISMVLST 122 (359)
Q Consensus 66 ~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~----~~~~~l~~~l~~~~~~~vi~~ 122 (359)
++||.|.+..+..+.+....-++...|+.++.++.. .+.+++...++. ++++++..
T Consensus 87 ~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~ 146 (384)
T 1eg5_A 87 KRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDE-DTFLVSIM 146 (384)
T ss_dssp TTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCT-TEEEEEEE
T ss_pred CCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHhCC-CCeEEEEE
Confidence 578988877666665555444555668766655432 356677766654 56666643
No 90
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=26.09 E-value=1.4e+02 Score=19.48 Aligned_cols=32 Identities=3% Similarity=-0.207 Sum_probs=26.4
Q ss_pred ccCCCCCeEEEEcCCCHHHHHHHHHHHHhCCe
Q 018211 63 LAGGCGARIGIVAKPSFEFVAGVLGTWFSGCI 94 (359)
Q Consensus 63 ~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~ 94 (359)
.+..+++.|.++|..+.....+...+...|..
T Consensus 36 l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~ 67 (85)
T 2jtq_A 36 AVPDKNDTVKVYCNAGRQSGQAKEILSEMGYT 67 (85)
T ss_dssp HCCCTTSEEEEEESSSHHHHHHHHHHHHTTCS
T ss_pred hCCCCCCcEEEEcCCCchHHHHHHHHHHcCCC
Confidence 45677889999999998888888888888864
No 91
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=25.84 E-value=1.4e+02 Score=26.31 Aligned_cols=56 Identities=11% Similarity=0.064 Sum_probs=34.9
Q ss_pred ccCCCCCeEEEEcCCCHHHHHHHHHHHHhCCeeeecCCC-----CCHHHHHHHHhhCC--ceEEEe
Q 018211 63 LAGGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALS-----YPESELLHVMHDSD--ISMVLS 121 (359)
Q Consensus 63 ~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~-----~~~~~l~~~l~~~~--~~~vi~ 121 (359)
.++++||.|.+-.+...... -++...|+.++.++.+ .+.+++...+...+ .++|+.
T Consensus 73 l~~~~Gd~Vi~~~~~~~~~~---~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~ 135 (377)
T 3ju7_A 73 KKRKKGKYALMPSFTFPATP---LAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVP 135 (377)
T ss_dssp HSCTTCCEEEEESSSCTHHH---HHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECC
T ss_pred cCCCCcCEEEECCCCcHHHH---HHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEE
Confidence 35788999887766554433 3456778876655432 36777777663333 666664
No 92
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=25.36 E-value=2.7e+02 Score=24.71 Aligned_cols=60 Identities=18% Similarity=0.147 Sum_probs=35.5
Q ss_pred ccCCCCCeEEEEcCCCH------HHHHHHHHH-HHhCCeeeecCCCC--------C----HHHHHHHHhhCCceEEEec
Q 018211 63 LAGGCGARIGIVAKPSF------EFVAGVLGT-WFSGCIAVPLALSY--------P----ESELLHVMHDSDISMVLST 122 (359)
Q Consensus 63 ~gv~~gd~V~i~~~n~~------~~~~~~lA~-~~~G~~~v~l~~~~--------~----~~~l~~~l~~~~~~~vi~~ 122 (359)
.-+++||+|+|++|.+. +-+-..... -..|..++.-..-. + .+++...+.+-+++.|++.
T Consensus 38 ~~Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~ 116 (371)
T 3tla_A 38 APLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMST 116 (371)
T ss_dssp CCCCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEES
T ss_pred CCCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEc
Confidence 47899999999999873 222222222 23676665432211 1 2345566666777888874
No 93
>4h27_A L-serine dehydratase/L-threonine deaminase; PLP dependent typeii, PLP binding, liver, lyase; HET: LLP; 1.30A {Homo sapiens} PDB: 1p5j_A* 1pwh_A* 1pwe_A*
Probab=25.35 E-value=2.1e+02 Score=25.20 Aligned_cols=55 Identities=7% Similarity=-0.020 Sum_probs=39.2
Q ss_pred EEEcCCCHHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccH
Q 018211 72 GIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYR 126 (359)
Q Consensus 72 ~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~ 126 (359)
.+....+-.-....+++.+.|..++.+-|...+......++..++.+++++..+.
T Consensus 96 vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vv~v~~~~~ 150 (364)
T 4h27_A 96 FVCSSSGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATVKVVGELLD 150 (364)
T ss_dssp EEECCSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHTTTCEEEEECSSTT
T ss_pred EEEeCCChHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHcCCEEEEECCCHH
Confidence 3444446777777888889998666555555555667778999999999986543
No 94
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=25.06 E-value=1.6e+02 Score=24.87 Aligned_cols=69 Identities=13% Similarity=0.210 Sum_probs=42.6
Q ss_pred eEEEEcCCCHHHHHHHHHHHHhCCeeeecCC--CCCHHHH---HHHHhhCCceEEEeccccH-HHHHHHhhhcCCce
Q 018211 70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLAL--SYPESEL---LHVMHDSDISMVLSTEDYR-EVLQNVASKSGAKF 140 (359)
Q Consensus 70 ~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~--~~~~~~l---~~~l~~~~~~~vi~~~~~~-~~~~~~~~~~~~~~ 140 (359)
+..+..++...++.-.+++-..|.. .+++ .-++.++ ...+++.++++||++.... +.+..+.+..+.++
T Consensus 175 ~~~v~~H~af~Yf~~~yGl~~~~~~--~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~ia~~~g~~v 249 (284)
T 2prs_A 175 KGYFVFHDAYGYFEKQFGLTPLGHF--TVNPEIQPGAQRLHEIRTQLVEQKATCVFAEPQFRPAVVESVARGTSVRM 249 (284)
T ss_dssp CCEEEEESCCHHHHHHHTCCCCEEE--ESSTTSCCCHHHHHHHHHHHHHTTCCEEEECTTSCSHHHHHHTTTSCCEE
T ss_pred CeEEEECccHHHHHHHCCCeEeEee--ccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHcCCeE
Confidence 4456677788888888888766533 3333 3455554 4556778999999986543 33444444444433
No 95
>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A
Probab=24.03 E-value=2.5e+02 Score=25.55 Aligned_cols=60 Identities=8% Similarity=-0.108 Sum_probs=42.3
Q ss_pred eEEEEcCCCHHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHHHH
Q 018211 70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVL 129 (359)
Q Consensus 70 ~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 129 (359)
+..+....+-.-....+++.+.|..++.+-|...+..-...++..++.+++++..+.+..
T Consensus 161 ~~vv~aSsGNhg~avA~~aa~~G~~~~Ivmp~~~~~~k~~~~r~~GA~Vv~v~~~~~~a~ 220 (442)
T 3ss7_X 161 YSIAVGSTGNLGLSIGIMSARIGFKVTVHMSADARAWKKAKLRSHGVTVVEYEQDYGVAV 220 (442)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEESSCHHHHH
T ss_pred cEEEEECCCHHHHHHHHHHHHhCCcEEEEECCCCCHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 355666667777788888999998655554444445566678999999999987654443
No 96
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=23.82 E-value=3.4e+02 Score=23.18 Aligned_cols=60 Identities=12% Similarity=-0.018 Sum_probs=41.4
Q ss_pred CCCCCeEEEEcCCCHHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccc
Q 018211 65 GGCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTED 124 (359)
Q Consensus 65 v~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 124 (359)
+++|....+....+-.-....+++.+.|..++.+-|...+......++..++++++++..
T Consensus 63 ~~~~~~~vv~assGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 122 (322)
T 1z7w_A 63 IKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPA 122 (322)
T ss_dssp CCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred CCCCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Confidence 355643444455677777788888899986665544444455566789999999998753
No 97
>2jwk_A Protein TOLR; periplasmic domain, membrane, inner membrane, protein transport, transmembrane, transport, membrane protein; NMR {Haemophilus influenzae} PDB: 2jwl_A
Probab=23.47 E-value=62 Score=20.75 Aligned_cols=37 Identities=8% Similarity=0.140 Sum_probs=26.0
Q ss_pred HHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHH
Q 018211 3 VFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRI 39 (359)
Q Consensus 3 i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~l 39 (359)
+.+.|....+.+|+.+.++..++..+|+.+.+-...+
T Consensus 32 L~~~l~~~~~~~~~~~V~I~aD~~~~y~~vv~vmd~l 68 (74)
T 2jwk_A 32 VTQLSRQEFDKDNNTLFLVGGAKEVPYEEVIKALNLL 68 (74)
T ss_dssp HHHHHHHHHHHCTTCCEEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 3445555555678888888888889998887665544
No 98
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=23.32 E-value=3.6e+02 Score=23.20 Aligned_cols=59 Identities=8% Similarity=-0.025 Sum_probs=41.8
Q ss_pred cCCCCCeEEEE-cCCC-HHHHHHHHHHHHhCCeeeecCCCC-------CHHHHHHHHhhCCceEEEec
Q 018211 64 AGGCGARIGIV-AKPS-FEFVAGVLGTWFSGCIAVPLALSY-------PESELLHVMHDSDISMVLST 122 (359)
Q Consensus 64 gv~~gd~V~i~-~~n~-~~~~~~~lA~~~~G~~~v~l~~~~-------~~~~l~~~l~~~~~~~vi~~ 122 (359)
..-+|..|+++ ..+| .--+-...|+.++|+-++.+++.. +..+...++...+++.++.-
T Consensus 32 ~~L~gk~la~lF~e~STRTR~SFE~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvLs~~~~D~iviR 99 (304)
T 3r7f_A 32 NQLTGKFAANLFFEPSTRTRFSFEVAEKKLGMNVLNLDGTSTSVQKGETLYDTIRTLESIGVDVCVIR 99 (304)
T ss_dssp CTTTTCEEEEEESSCCSHHHHHHHHHHHHTTCEEEEEETTSTTSCSSSCHHHHHHHHHHHTCCEEEEE
T ss_pred ccCCCCEEEEEecCCChhHHHhHHHHHHHCCCeEEEECcccccCCCCCCHHHHHHHHHHhcCCEEEEe
Confidence 34467776655 5556 566677899999999999887743 34566777788777777653
No 99
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Probab=23.04 E-value=3.4e+02 Score=23.37 Aligned_cols=55 Identities=4% Similarity=0.013 Sum_probs=35.7
Q ss_pred ccCCCCCeEEEEcCCCHHHHHHHHHHHHhCC-eeeecCCCCCHHHHHHHHhhCCceEEEe
Q 018211 63 LAGGCGARIGIVAKPSFEFVAGVLGTWFSGC-IAVPLALSYPESELLHVMHDSDISMVLS 121 (359)
Q Consensus 63 ~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~-~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 121 (359)
.++++|++|+|+..-..-.++..+| ...|+ .++.++.+ ++ -..++++.+++.++.
T Consensus 162 ~~~~~g~~VlV~GaG~vG~~a~qla-~~~Ga~~Vi~~~~~--~~-~~~~~~~lGa~~vi~ 217 (352)
T 3fpc_A 162 ANIKLGDTVCVIGIGPVGLMSVAGA-NHLGAGRIFAVGSR--KH-CCDIALEYGATDIIN 217 (352)
T ss_dssp TTCCTTCCEEEECCSHHHHHHHHHH-HTTTCSSEEEECCC--HH-HHHHHHHHTCCEEEC
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHH-HHcCCcEEEEECCC--HH-HHHHHHHhCCceEEc
Confidence 6899999999998633455544444 56787 55555432 33 334567778887764
No 100
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}
Probab=22.75 E-value=3.5e+02 Score=22.91 Aligned_cols=58 Identities=14% Similarity=0.005 Sum_probs=39.1
Q ss_pred CCCCeEEEEcCCCHHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccc
Q 018211 66 GCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTED 124 (359)
Q Consensus 66 ~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 124 (359)
++|+.|.. ...+-.-....+++.+.|..++.+-|...+..-...++..++++++++..
T Consensus 63 ~~g~~vv~-assGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~ 120 (308)
T 2egu_A 63 KPGDTIVE-PTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGA 120 (308)
T ss_dssp CTTCEEEE-ECCHHHHHHHHHHHHHHTCEEEEEEESCSCHHHHHHHHHTTCEEEEECGG
T ss_pred CCCCEEEE-eCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCC
Confidence 55665544 45556666777778889986655544434444556779999999998763
No 101
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens}
Probab=22.55 E-value=3.1e+02 Score=23.36 Aligned_cols=59 Identities=8% Similarity=0.015 Sum_probs=40.1
Q ss_pred CCeEEEEcCCCHHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHH
Q 018211 68 GARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYRE 127 (359)
Q Consensus 68 gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~ 127 (359)
++.|... ..+-.-....+++.+.|..++.+-|...+......++..++++++++..+.+
T Consensus 54 ~~~vv~~-ssGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~~~~~ 112 (318)
T 2rkb_A 54 CRHLVCS-SGGNAGIAAAYAARKLGIPATIVLPESTSLQVVQRLQGEGAEVQLTGKVWDE 112 (318)
T ss_dssp CCEEEEC-CCSHHHHHHHHHHHHHTCCEEEEECTTCCHHHHHHHHHTTCEEEECCSSHHH
T ss_pred CCEEEEE-CCchHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHhcCCEEEEECCCHHH
Confidence 3444443 4467777777888899986666545444455667789999999998865433
No 102
>2pfu_A Biopolymer transport EXBD protein; TONB system, proton motive force, periplasmic domain; NMR {Escherichia coli}
Probab=22.31 E-value=1.3e+02 Score=20.58 Aligned_cols=37 Identities=14% Similarity=0.146 Sum_probs=29.4
Q ss_pred HHHHHHHcCCCCCCceEEeeCCccccHHHHHHHHHHH
Q 018211 3 VFKAAYKKGSMARDSVAIRADQKSYSYDQLASSALRI 39 (359)
Q Consensus 3 i~~~l~~~a~~~p~~~ai~~~~~~~Ty~el~~~~~~l 39 (359)
+.+.|....+..|+...++..++..+|..+.+-.+.+
T Consensus 44 L~~~l~~~~~~~~~~~V~I~aD~~~~y~~vv~vmd~l 80 (99)
T 2pfu_A 44 MITALNALTEGKKDTTIFFRADKTVDYETLMKVMDTL 80 (99)
T ss_dssp HHHHHHHHSSSCCSSCEEEEECTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 4567777777888888888889999999888766554
No 103
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=22.12 E-value=2.7e+02 Score=24.23 Aligned_cols=60 Identities=13% Similarity=0.077 Sum_probs=35.2
Q ss_pred ccCCCCCeEEEEcCCCH------HHHHHHHHHH-HhCCeeeecCCCC--------C----HHHHHHHHhhCCceEEEec
Q 018211 63 LAGGCGARIGIVAKPSF------EFVAGVLGTW-FSGCIAVPLALSY--------P----ESELLHVMHDSDISMVLST 122 (359)
Q Consensus 63 ~gv~~gd~V~i~~~n~~------~~~~~~lA~~-~~G~~~v~l~~~~--------~----~~~l~~~l~~~~~~~vi~~ 122 (359)
.-+++||+|+|++|.+. +-+-.....+ ..|..++.-..-. + .+++...+.+-+++.|++.
T Consensus 7 ~~L~~GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~ 85 (331)
T 4e5s_A 7 TKLKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTT 85 (331)
T ss_dssp CCCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEES
T ss_pred CCCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEc
Confidence 36899999999999874 2222222222 3566655432211 1 2345566666777888864
No 104
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=21.89 E-value=3.7e+02 Score=22.83 Aligned_cols=57 Identities=11% Similarity=-0.091 Sum_probs=40.0
Q ss_pred CCCCeEEEEcCCCHHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEecc
Q 018211 66 GCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTE 123 (359)
Q Consensus 66 ~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 123 (359)
++|+.|.. ...+-.-....+++.+.|..++.+-|...+......++..++++++++.
T Consensus 65 ~~g~~vv~-assGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 121 (313)
T 2q3b_A 65 KPDTIILE-PTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPG 121 (313)
T ss_dssp CTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred CCCCEEEE-eCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEeCC
Confidence 55666554 5556777777778889998666554444444556678899999999875
No 105
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}
Probab=21.89 E-value=4e+02 Score=23.59 Aligned_cols=55 Identities=13% Similarity=0.081 Sum_probs=35.6
Q ss_pred cCCCCCeEEEEcCCCHHHHHHHHHHHHhCC-eeeecCCCCCHHHHHHHHhhCCceEEEec
Q 018211 64 AGGCGARIGIVAKPSFEFVAGVLGTWFSGC-IAVPLALSYPESELLHVMHDSDISMVLST 122 (359)
Q Consensus 64 gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~-~~v~l~~~~~~~~l~~~l~~~~~~~vi~~ 122 (359)
++++|++|+|+..-..-.+++.+| ...|+ .++.++.+ ++. ..++++.+++.++..
T Consensus 210 ~~~~g~~VlV~GaG~vG~~aiqla-k~~Ga~~Vi~~~~~--~~~-~~~~~~lGa~~vi~~ 265 (404)
T 3ip1_A 210 GIRPGDNVVILGGGPIGLAAVAIL-KHAGASKVILSEPS--EVR-RNLAKELGADHVIDP 265 (404)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEECSC--HHH-HHHHHHHTCSEEECT
T ss_pred CCCCCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCC--HHH-HHHHHHcCCCEEEcC
Confidence 789999999998743455555454 46788 56655433 333 345677788877743
No 106
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=20.87 E-value=1.7e+02 Score=25.07 Aligned_cols=56 Identities=14% Similarity=0.023 Sum_probs=32.9
Q ss_pred CCCCeEEEEcCCCHHHHHHHHHHHHhCCeeeecCCC----CCHHHHHHHHhhCCceEEEec
Q 018211 66 GCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALS----YPESELLHVMHDSDISMVLST 122 (359)
Q Consensus 66 ~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~----~~~~~l~~~l~~~~~~~vi~~ 122 (359)
++||.|.+..+..+.+..++..+.+.|+.++.++.+ ...+++...++. ++++++..
T Consensus 86 ~~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~ 145 (382)
T 4hvk_A 86 RKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRD-DTILVSVQ 145 (382)
T ss_dssp GGCCEEEEETTCCHHHHHHHHHHHHTTCEEEEECBCTTSCBCHHHHHHHCCT-TEEEEECC
T ss_pred CCCCEEEECCCCcHHHHHHHHHHHhcCCEEEEeccCCCCCcCHHHHHHHhcc-CceEEEEE
Confidence 678888777766666655554445567655555432 255666666543 45555543
No 107
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=20.84 E-value=1.5e+02 Score=25.72 Aligned_cols=54 Identities=15% Similarity=0.015 Sum_probs=22.4
Q ss_pred CCCCeEEEEcCCCHHHHHHHHHHHHhCCeeeecCC--C--CCHHHHHHHHhhCCceEEE
Q 018211 66 GCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLAL--S--YPESELLHVMHDSDISMVL 120 (359)
Q Consensus 66 ~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~--~--~~~~~l~~~l~~~~~~~vi 120 (359)
++||.|.+..+..+.+.-+...+...|+.++.++. . .+.+++...++. ++++++
T Consensus 86 ~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~ 143 (382)
T 4eb5_A 86 RKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRD-DTILVS 143 (382)
T ss_dssp GGCCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBCTTSCBCHHHHHHHCCT-TEEEEE
T ss_pred CCCCEEEECCCcchHHHHHHHHHHhCCcEEEEeccCCCCccCHHHHHHHhcC-CCeEEE
Confidence 35565555544444333322222234554433322 1 234445444432 344444
No 108
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*
Probab=20.56 E-value=4.2e+02 Score=22.95 Aligned_cols=58 Identities=14% Similarity=-0.059 Sum_probs=40.1
Q ss_pred CCCCeEEEEcCCCHHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccc
Q 018211 66 GCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTED 124 (359)
Q Consensus 66 ~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 124 (359)
++|+.|.... .+-.-....+++.+.|..++.+-|...+......++..++.+++++..
T Consensus 76 ~~g~~vv~aS-sGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 133 (343)
T 2pqm_A 76 KPGMEIIEST-SGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELILTEGK 133 (343)
T ss_dssp CTTCEEEEEC-SSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred CCCCEEEEEC-CcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 5666665554 366666777778889986655544444455566789999999998763
No 109
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=20.40 E-value=2.6e+02 Score=25.20 Aligned_cols=26 Identities=4% Similarity=-0.132 Sum_probs=15.6
Q ss_pred CHHHHHHHHHHhC-CcccccccCCcCc
Q 018211 316 PLPVMQQWETITG-HRLLERYGMTEGC 341 (359)
Q Consensus 316 ~~~~~~~~~~~~~-~~v~~~YG~TE~g 341 (359)
..+..++|.+.+. ..+-..+|..|+-
T Consensus 356 ~~~~~~~~~~~l~~~~~~~s~G~~~sl 382 (430)
T 3ri6_A 356 SKEASYRFMDALKLIRRATNIHDNKSL 382 (430)
T ss_dssp SHHHHHHHHHHCSSSEECSCCSCSSCE
T ss_pred CHHHHHHHHHhCCcceecCCCCCCCce
Confidence 3455666666654 3445667777774
No 110
>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A*
Probab=20.22 E-value=3.5e+02 Score=23.82 Aligned_cols=58 Identities=10% Similarity=-0.004 Sum_probs=39.7
Q ss_pred CeEEEEcCCCHHHHHHHHHHHHhCCeeeecCCCCCHHHHHHHHhhCCceEEEeccccHH
Q 018211 69 ARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYRE 127 (359)
Q Consensus 69 d~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~ 127 (359)
+.|.. ...+-.-..+.+++.+.|..++.+-|...+......++..++.+++++..+.+
T Consensus 94 ~~vv~-aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~ 151 (372)
T 1p5j_A 94 AHFVC-SSAGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATCKVVGELLDE 151 (372)
T ss_dssp CEEEE-CCSSHHHHHHHHHHHHHTCCEEEEECTTCCHHHHHHHHHTTCEEEECCSCHHH
T ss_pred CEEEE-eCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhcCCEEEEECCCHHH
Confidence 34433 34467777777788899986666555444555667789999999998865433
No 111
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=20.04 E-value=1.5e+02 Score=25.18 Aligned_cols=69 Identities=10% Similarity=0.228 Sum_probs=41.0
Q ss_pred eEEEEcCCCHHHHHHHHHHHHhCCeeeecCC--CCCHHHH---HHHHhhCCceEEEeccccH-HHHHHHhhhcCCce
Q 018211 70 RIGIVAKPSFEFVAGVLGTWFSGCIAVPLAL--SYPESEL---LHVMHDSDISMVLSTEDYR-EVLQNVASKSGAKF 140 (359)
Q Consensus 70 ~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~--~~~~~~l---~~~l~~~~~~~vi~~~~~~-~~~~~~~~~~~~~~ 140 (359)
+..+..++...++.-.+++-..|.. .+++ .-++.++ ...+++.++++||++.... +.+..+.+..+.++
T Consensus 178 ~~~v~~H~af~Yf~~~yGl~~~~~~--~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~ia~~~g~~v 252 (284)
T 3cx3_A 178 KTFVTQHTAFSYLAKRFGLNQLGIA--GISPEQEPSPRQLTEIQEFVKTYKVKTIFTESNASSKVAETLVKSTGVGL 252 (284)
T ss_dssp CCEEEEESCCHHHHHHTTCCEEEEE--CSSTTCCCCSHHHHHHHHHHHHTTCCCEEECSSSCCHHHHHHHSSSSCCE
T ss_pred CEEEEECCchHHHHHHcCCEEeecc--CCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHcCCeE
Confidence 3456677788888888877765532 2322 3345544 4556778999999986543 33344444444443
Done!