Query 018213
Match_columns 359
No_of_seqs 422 out of 3624
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 07:05:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018213.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018213hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2084 MmsB 3-hydroxyisobutyr 100.0 4.1E-51 8.9E-56 361.5 33.4 285 72-356 1-286 (286)
2 KOG0409 Predicted dehydrogenas 100.0 9.3E-48 2E-52 332.7 32.5 290 69-358 33-323 (327)
3 PRK15059 tartronate semialdehy 100.0 4.9E-45 1.1E-49 331.4 34.3 286 72-358 1-286 (292)
4 PRK15461 NADH-dependent gamma- 100.0 3.3E-44 7.1E-49 327.5 34.1 286 72-357 2-288 (296)
5 TIGR01505 tartro_sem_red 2-hyd 100.0 1.4E-42 2.9E-47 317.1 33.3 285 73-357 1-285 (291)
6 PRK11559 garR tartronate semia 100.0 2E-42 4.4E-47 316.9 33.4 286 72-357 3-288 (296)
7 TIGR01692 HIBADH 3-hydroxyisob 100.0 4.1E-42 9E-47 313.0 31.8 280 76-355 1-287 (288)
8 PLN02858 fructose-bisphosphate 100.0 1.6E-40 3.5E-45 351.2 32.9 287 71-357 4-293 (1378)
9 PLN02858 fructose-bisphosphate 100.0 3.6E-39 7.8E-44 340.9 34.0 288 70-357 323-613 (1378)
10 PRK12490 6-phosphogluconate de 100.0 2.9E-38 6.4E-43 288.9 27.0 279 72-356 1-292 (299)
11 PLN02350 phosphogluconate dehy 100.0 3.4E-37 7.4E-42 294.4 28.1 268 69-340 4-299 (493)
12 PRK09599 6-phosphogluconate de 100.0 9.9E-36 2.1E-40 272.6 26.6 278 72-356 1-293 (301)
13 TIGR00872 gnd_rel 6-phosphoglu 100.0 2.9E-32 6.2E-37 249.1 27.1 278 72-357 1-288 (298)
14 PTZ00142 6-phosphogluconate de 100.0 2.1E-31 4.5E-36 254.6 26.5 256 72-331 2-283 (470)
15 TIGR00873 gnd 6-phosphoglucona 100.0 1.4E-30 3.1E-35 249.1 24.2 254 74-331 2-279 (467)
16 PRK09287 6-phosphogluconate de 100.0 3E-29 6.5E-34 238.9 24.1 246 82-331 1-272 (459)
17 TIGR03026 NDP-sugDHase nucleot 100.0 3.4E-28 7.4E-33 232.1 25.2 255 72-340 1-298 (411)
18 COG1052 LdhA Lactate dehydroge 100.0 1E-29 2.2E-34 231.7 8.1 179 1-198 90-269 (324)
19 COG1023 Gnd Predicted 6-phosph 100.0 1.8E-27 3.9E-32 199.5 20.3 264 72-341 1-274 (300)
20 PF03446 NAD_binding_2: NAD bi 100.0 2E-28 4.4E-33 204.1 11.1 162 71-233 1-163 (163)
21 PRK14618 NAD(P)H-dependent gly 100.0 9.6E-28 2.1E-32 222.8 16.0 272 71-357 4-322 (328)
22 COG0111 SerA Phosphoglycerate 99.9 2.9E-28 6.3E-33 222.4 8.0 176 4-199 92-267 (324)
23 PRK08410 2-hydroxyacid dehydro 99.9 1.7E-27 3.6E-32 218.0 8.6 177 2-198 88-264 (311)
24 PRK00094 gpsA NAD(P)H-dependen 99.9 6.5E-26 1.4E-30 210.7 18.4 273 72-356 2-323 (325)
25 PRK15409 bifunctional glyoxyla 99.9 2.1E-27 4.5E-32 217.9 7.7 177 2-197 91-268 (323)
26 PLN03139 formate dehydrogenase 99.9 6.3E-27 1.4E-31 217.8 9.5 180 2-199 146-325 (386)
27 PRK07574 formate dehydrogenase 99.9 7.1E-27 1.5E-31 217.6 9.0 177 4-197 140-316 (385)
28 PRK06487 glycerate dehydrogena 99.9 9.5E-27 2.1E-31 213.5 9.6 176 2-198 91-266 (317)
29 PRK06129 3-hydroxyacyl-CoA deh 99.9 1.6E-24 3.5E-29 199.2 23.8 266 72-354 3-295 (308)
30 PRK06932 glycerate dehydrogena 99.9 1.6E-26 3.5E-31 211.6 8.5 176 2-197 90-265 (314)
31 PRK14619 NAD(P)H-dependent gly 99.9 1E-24 2.2E-29 200.5 18.8 257 69-357 2-300 (308)
32 PRK15182 Vi polysaccharide bio 99.9 6.4E-24 1.4E-28 201.9 23.8 255 69-338 4-293 (425)
33 PRK11790 D-3-phosphoglycerate 99.9 6.1E-26 1.3E-30 214.7 7.7 172 2-197 100-271 (409)
34 KOG0068 D-3-phosphoglycerate d 99.9 5.3E-26 1.2E-30 199.6 6.5 176 1-198 94-269 (406)
35 PLN02306 hydroxypyruvate reduc 99.9 6.8E-26 1.5E-30 211.7 7.4 178 2-196 111-303 (386)
36 PRK13243 glyoxylate reductase; 99.9 7.5E-26 1.6E-30 209.0 7.5 181 2-197 92-272 (333)
37 PRK11064 wecC UDP-N-acetyl-D-m 99.9 3.9E-23 8.5E-28 196.7 25.7 251 71-338 3-295 (415)
38 PRK06436 glycerate dehydrogena 99.9 1.2E-25 2.7E-30 204.0 7.8 167 3-197 74-241 (303)
39 PF02826 2-Hacid_dh_C: D-isome 99.9 6.1E-26 1.3E-30 191.8 4.2 160 21-198 1-160 (178)
40 PLN02928 oxidoreductase family 99.9 2.6E-25 5.7E-30 206.1 7.0 174 3-197 108-294 (347)
41 PRK15469 ghrA bifunctional gly 99.9 3.3E-25 7E-30 202.4 7.4 163 13-197 96-258 (312)
42 PRK12480 D-lactate dehydrogena 99.9 3.1E-25 6.8E-30 204.3 6.7 173 2-197 94-266 (330)
43 TIGR01327 PGDH D-3-phosphoglyc 99.9 3.9E-25 8.4E-30 216.0 7.4 174 3-197 88-261 (525)
44 PRK15057 UDP-glucose 6-dehydro 99.9 2.2E-22 4.7E-27 189.3 24.3 249 72-338 1-283 (388)
45 PRK13581 D-3-phosphoglycerate 99.9 1.5E-24 3.3E-29 211.8 6.9 173 3-197 90-262 (526)
46 KOG0069 Glyoxylate/hydroxypyru 99.9 4.9E-24 1.1E-28 191.9 9.5 167 13-196 118-284 (336)
47 COG0362 Gnd 6-phosphogluconate 99.9 4.1E-22 9E-27 178.8 20.0 256 72-331 4-284 (473)
48 PRK08605 D-lactate dehydrogena 99.9 8.1E-24 1.7E-28 195.6 6.7 173 2-196 94-267 (332)
49 PRK08229 2-dehydropantoate 2-r 99.9 2.7E-21 5.9E-26 180.8 18.3 259 72-345 3-323 (341)
50 PLN02688 pyrroline-5-carboxyla 99.9 1.9E-20 4.1E-25 169.0 20.6 250 72-342 1-264 (266)
51 COG0240 GpsA Glycerol-3-phosph 99.9 1.7E-20 3.6E-25 168.1 18.3 261 72-336 2-309 (329)
52 PRK07531 bifunctional 3-hydrox 99.9 4.9E-20 1.1E-24 179.4 21.2 198 72-285 5-226 (495)
53 PRK15438 erythronate-4-phospha 99.9 1.3E-21 2.8E-26 181.6 8.8 153 2-197 83-239 (378)
54 PRK07679 pyrroline-5-carboxyla 99.8 6.7E-20 1.4E-24 166.3 18.2 250 71-342 3-269 (279)
55 COG1004 Ugd Predicted UDP-gluc 99.8 1.1E-18 2.3E-23 158.5 23.5 257 72-340 1-296 (414)
56 PRK00257 erythronate-4-phospha 99.8 5E-21 1.1E-25 178.3 8.7 153 2-197 83-239 (381)
57 PLN02353 probable UDP-glucose 99.8 3.5E-18 7.6E-23 164.0 27.4 252 71-334 1-302 (473)
58 PRK12557 H(2)-dependent methyl 99.8 1.8E-18 3.8E-23 159.7 22.4 199 72-278 1-238 (342)
59 KOG2653 6-phosphogluconate deh 99.8 8E-19 1.7E-23 155.3 18.6 257 70-331 5-287 (487)
60 PRK14620 NAD(P)H-dependent gly 99.8 1.8E-18 4E-23 160.6 21.0 270 72-354 1-323 (326)
61 PRK12439 NAD(P)H-dependent gly 99.8 2.1E-18 4.6E-23 160.5 20.5 275 70-356 6-328 (341)
62 PF14833 NAD_binding_11: NAD-b 99.8 4.7E-19 1E-23 140.4 13.0 121 235-355 1-122 (122)
63 PRK11199 tyrA bifunctional cho 99.8 8.2E-18 1.8E-22 158.1 22.6 180 70-274 97-279 (374)
64 PRK09260 3-hydroxybutyryl-CoA 99.8 2.6E-18 5.6E-23 156.7 18.1 189 72-282 2-223 (288)
65 PRK08507 prephenate dehydrogen 99.8 1.5E-17 3.3E-22 150.6 22.5 192 72-277 1-207 (275)
66 PRK07066 3-hydroxybutyryl-CoA 99.8 1.5E-17 3.3E-22 151.9 22.5 196 72-284 8-228 (321)
67 PRK08655 prephenate dehydrogen 99.8 3.9E-17 8.4E-22 156.4 25.2 196 72-276 1-202 (437)
68 PRK08268 3-hydroxy-acyl-CoA de 99.8 6.2E-18 1.3E-22 164.5 19.7 186 72-281 8-227 (507)
69 PTZ00345 glycerol-3-phosphate 99.8 2.7E-17 5.9E-22 152.7 22.9 273 70-356 10-354 (365)
70 PRK12921 2-dehydropantoate 2-r 99.8 2.1E-17 4.6E-22 152.2 20.9 256 72-339 1-301 (305)
71 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.8 9.7E-18 2.1E-22 162.7 18.2 187 71-281 5-225 (503)
72 COG0677 WecC UDP-N-acetyl-D-ma 99.8 3.6E-17 7.7E-22 148.0 20.4 205 72-280 10-254 (436)
73 PRK12491 pyrroline-5-carboxyla 99.8 2.7E-17 5.9E-22 147.9 19.4 251 72-342 3-267 (272)
74 PRK06522 2-dehydropantoate 2-r 99.8 2.6E-17 5.6E-22 151.5 19.1 256 72-341 1-300 (304)
75 PRK06249 2-dehydropantoate 2-r 99.8 8.8E-17 1.9E-21 148.3 21.2 257 69-341 3-311 (313)
76 TIGR03376 glycerol3P_DH glycer 99.8 3.7E-17 8.1E-22 150.8 18.4 259 73-336 1-330 (342)
77 PRK07417 arogenate dehydrogena 99.8 3.2E-17 6.9E-22 148.7 17.1 172 72-251 1-185 (279)
78 PRK11880 pyrroline-5-carboxyla 99.8 2.4E-16 5.3E-21 142.3 22.6 250 71-342 2-265 (267)
79 PLN02256 arogenate dehydrogena 99.8 2.3E-16 5E-21 143.7 21.9 167 69-241 34-212 (304)
80 COG0345 ProC Pyrroline-5-carbo 99.7 1.9E-16 4.1E-21 139.6 19.9 249 72-342 2-264 (266)
81 PRK06476 pyrroline-5-carboxyla 99.7 1.4E-16 3.1E-21 143.0 19.3 244 72-339 1-254 (258)
82 PRK07819 3-hydroxybutyryl-CoA 99.7 7.9E-17 1.7E-21 146.2 17.7 193 72-282 6-228 (286)
83 COG0287 TyrA Prephenate dehydr 99.7 1.2E-15 2.6E-20 136.6 22.6 169 71-244 3-182 (279)
84 PLN02545 3-hydroxybutyryl-CoA 99.7 2.5E-16 5.3E-21 144.2 18.2 188 72-282 5-225 (295)
85 PRK06545 prephenate dehydrogen 99.7 7.7E-16 1.7E-20 144.4 21.0 196 72-279 1-213 (359)
86 PRK06130 3-hydroxybutyryl-CoA 99.7 7.2E-16 1.6E-20 142.3 20.4 193 72-282 5-222 (311)
87 PRK07502 cyclohexadienyl dehyd 99.7 3E-15 6.5E-20 137.8 23.5 173 69-246 4-192 (307)
88 PRK07680 late competence prote 99.7 1.1E-15 2.3E-20 138.4 19.6 195 72-279 1-205 (273)
89 PRK07530 3-hydroxybutyryl-CoA 99.7 1.1E-15 2.3E-20 139.8 19.8 188 71-281 4-224 (292)
90 PRK05708 2-dehydropantoate 2-r 99.7 7E-16 1.5E-20 141.5 18.0 259 72-341 3-299 (305)
91 COG1893 ApbA Ketopantoate redu 99.7 1.4E-15 2.9E-20 138.9 19.5 258 72-341 1-302 (307)
92 PRK08293 3-hydroxybutyryl-CoA 99.7 1.4E-15 3E-20 138.6 19.2 194 72-282 4-227 (287)
93 TIGR01724 hmd_rel H2-forming N 99.7 9.1E-15 2E-19 130.2 23.3 157 72-233 1-194 (341)
94 PRK06035 3-hydroxyacyl-CoA deh 99.7 1.4E-15 3E-20 138.9 16.4 192 72-282 4-227 (291)
95 PRK05808 3-hydroxybutyryl-CoA 99.7 5.3E-15 1.2E-19 134.5 20.1 192 72-281 4-223 (282)
96 PLN02712 arogenate dehydrogena 99.7 7E-15 1.5E-19 147.1 20.9 174 69-249 367-552 (667)
97 PTZ00431 pyrroline carboxylate 99.6 2.7E-14 5.9E-19 128.1 20.9 242 71-341 3-259 (260)
98 PRK07634 pyrroline-5-carboxyla 99.6 1.7E-14 3.7E-19 128.6 17.8 198 69-279 2-209 (245)
99 COG2085 Predicted dinucleotide 99.6 9.8E-15 2.1E-19 122.7 14.1 171 71-246 1-193 (211)
100 PLN02712 arogenate dehydrogena 99.6 5.5E-14 1.2E-18 140.7 22.0 169 69-243 50-230 (667)
101 PRK06928 pyrroline-5-carboxyla 99.6 8.3E-14 1.8E-18 126.1 18.6 247 72-340 2-265 (277)
102 PRK14806 bifunctional cyclohex 99.6 1.3E-13 2.8E-18 141.6 22.1 183 72-259 4-202 (735)
103 TIGR01915 npdG NADPH-dependent 99.6 3.9E-14 8.4E-19 123.9 15.3 169 72-247 1-203 (219)
104 PRK08818 prephenate dehydrogen 99.6 2E-13 4.3E-18 126.9 20.0 156 70-244 3-166 (370)
105 PRK05479 ketol-acid reductoiso 99.6 1.7E-13 3.8E-18 124.9 18.8 195 69-273 15-225 (330)
106 COG1250 FadB 3-hydroxyacyl-CoA 99.5 3.1E-13 6.6E-18 121.7 17.2 193 72-282 4-224 (307)
107 PRK08269 3-hydroxybutyryl-CoA 99.5 3.3E-13 7.2E-18 123.9 15.1 181 82-282 1-221 (314)
108 PRK13403 ketol-acid reductoiso 99.5 1.6E-12 3.4E-17 116.9 16.9 196 69-273 14-223 (335)
109 PRK11730 fadB multifunctional 99.5 8.5E-13 1.8E-17 133.9 17.2 191 72-281 314-532 (715)
110 TIGR00465 ilvC ketol-acid redu 99.5 2.1E-12 4.5E-17 118.1 17.2 195 70-279 2-217 (314)
111 TIGR02437 FadB fatty oxidation 99.5 1.3E-12 2.9E-17 132.2 16.9 191 72-281 314-532 (714)
112 PF02737 3HCDH_N: 3-hydroxyacy 99.5 1.3E-13 2.9E-18 116.4 8.1 152 73-233 1-179 (180)
113 PF03807 F420_oxidored: NADP o 99.5 1.1E-13 2.3E-18 104.8 6.8 90 73-167 1-96 (96)
114 PF02153 PDH: Prephenate dehyd 99.5 1.7E-12 3.7E-17 116.2 15.6 166 86-257 1-181 (258)
115 PF01210 NAD_Gly3P_dh_N: NAD-d 99.5 1.5E-13 3.3E-18 113.7 8.0 136 73-212 1-155 (157)
116 PRK11154 fadJ multifunctional 99.4 4.6E-12 1E-16 128.6 17.4 187 72-277 310-525 (708)
117 TIGR02441 fa_ox_alpha_mit fatt 99.4 2.9E-12 6.2E-17 130.1 15.8 187 72-277 336-550 (737)
118 TIGR02440 FadJ fatty oxidation 99.4 6.2E-12 1.4E-16 127.3 17.8 187 72-277 305-520 (699)
119 PTZ00075 Adenosylhomocysteinas 99.4 4.3E-13 9.3E-18 127.0 8.2 104 69-182 252-355 (476)
120 TIGR00745 apbA_panE 2-dehydrop 99.4 1.3E-11 2.9E-16 112.9 17.5 245 81-339 1-291 (293)
121 PF03721 UDPG_MGDP_dh_N: UDP-g 99.4 1.4E-12 3E-17 110.5 8.7 118 72-192 1-153 (185)
122 KOG2304 3-hydroxyacyl-CoA dehy 99.4 1.5E-12 3.3E-17 109.1 8.6 196 69-283 9-239 (298)
123 PF10727 Rossmann-like: Rossma 99.4 7.6E-13 1.6E-17 104.2 4.8 112 69-187 8-123 (127)
124 KOG2380 Prephenate dehydrogena 99.3 6.8E-11 1.5E-15 104.9 16.5 159 70-234 51-221 (480)
125 TIGR02853 spore_dpaA dipicolin 99.2 2.8E-11 6E-16 109.7 9.4 112 69-190 149-262 (287)
126 TIGR00112 proC pyrroline-5-car 99.2 5.3E-10 1.2E-14 99.4 15.0 226 94-339 9-244 (245)
127 PRK06444 prephenate dehydrogen 99.2 3.7E-09 8.1E-14 90.0 18.8 128 72-245 1-133 (197)
128 COG4007 Predicted dehydrogenas 99.2 6.4E-09 1.4E-13 89.1 19.4 191 72-270 2-232 (340)
129 KOG2711 Glycerol-3-phosphate d 99.2 1.9E-09 4.1E-14 96.3 16.7 277 69-358 19-367 (372)
130 PF07991 IlvN: Acetohydroxy ac 99.2 1.3E-10 2.8E-15 93.9 8.1 91 69-163 2-93 (165)
131 cd01065 NAD_bind_Shikimate_DH 99.1 1.5E-10 3.2E-15 95.6 8.1 114 69-188 17-137 (155)
132 PRK13302 putative L-aspartate 99.1 3.7E-10 8.1E-15 101.6 11.1 111 69-186 4-119 (271)
133 PLN02494 adenosylhomocysteinas 99.1 1.8E-10 3.9E-15 109.0 8.5 103 69-178 252-355 (477)
134 TIGR00936 ahcY adenosylhomocys 99.1 4.9E-10 1.1E-14 105.3 10.4 106 69-181 193-299 (406)
135 KOG3124 Pyrroline-5-carboxylat 99.1 1.5E-08 3.3E-13 87.3 16.8 251 72-342 1-265 (267)
136 PRK08306 dipicolinate synthase 99.0 3E-09 6.5E-14 97.0 10.1 112 68-189 149-262 (296)
137 cd01075 NAD_bind_Leu_Phe_Val_D 99.0 4.3E-09 9.2E-14 90.5 10.3 110 69-188 26-137 (200)
138 KOG2666 UDP-glucose/GDP-mannos 98.9 1.1E-07 2.3E-12 84.1 17.8 244 72-324 2-290 (481)
139 KOG2305 3-hydroxyacyl-CoA dehy 98.9 1.2E-08 2.6E-13 86.0 9.9 200 72-286 4-231 (313)
140 PF00670 AdoHcyase_NAD: S-aden 98.9 5.3E-09 1.2E-13 85.1 7.3 94 69-169 21-114 (162)
141 PRK05476 S-adenosyl-L-homocyst 98.9 7.6E-09 1.7E-13 97.9 9.4 101 69-176 210-311 (425)
142 PRK13304 L-aspartate dehydroge 98.9 1.4E-08 3E-13 91.4 10.7 108 72-186 2-116 (265)
143 KOG0067 Transcription factor C 98.9 1E-09 2.3E-14 98.6 2.6 156 18-186 134-290 (435)
144 PRK05225 ketol-acid reductoiso 98.8 4.1E-09 9E-14 98.6 6.4 89 69-162 34-128 (487)
145 PRK14194 bifunctional 5,10-met 98.8 2.2E-08 4.8E-13 90.1 9.2 79 67-168 155-234 (301)
146 cd00401 AdoHcyase S-adenosyl-L 98.7 8.3E-08 1.8E-12 90.7 11.7 93 69-168 200-292 (413)
147 COG0059 IlvC Ketol-acid reduct 98.7 8.6E-08 1.9E-12 84.6 8.6 90 69-162 16-106 (338)
148 PF01408 GFO_IDH_MocA: Oxidore 98.7 2E-07 4.2E-12 73.3 9.8 108 72-186 1-116 (120)
149 PRK06141 ornithine cyclodeamin 98.7 5.6E-08 1.2E-12 89.6 7.3 111 69-188 123-241 (314)
150 PF01488 Shikimate_DH: Shikima 98.6 2.6E-08 5.6E-13 80.2 4.1 93 69-166 10-110 (135)
151 PRK14188 bifunctional 5,10-met 98.6 1.5E-07 3.1E-12 85.0 9.1 77 68-168 155-233 (296)
152 COG5495 Uncharacterized conser 98.6 8E-07 1.7E-11 75.3 12.8 192 69-270 8-206 (289)
153 PF02558 ApbA: Ketopantoate re 98.6 8.1E-08 1.8E-12 78.8 6.5 100 74-179 1-114 (151)
154 COG1748 LYS9 Saccharopine dehy 98.5 3.4E-07 7.3E-12 85.4 9.2 109 71-187 1-120 (389)
155 TIGR00518 alaDH alanine dehydr 98.5 1.4E-07 3E-12 88.8 6.4 96 69-166 165-268 (370)
156 COG1712 Predicted dinucleotide 98.5 6.7E-07 1.4E-11 75.7 9.2 94 72-172 1-98 (255)
157 TIGR00507 aroE shikimate 5-deh 98.5 4.3E-07 9.3E-12 82.1 8.4 114 69-188 115-235 (270)
158 cd05213 NAD_bind_Glutamyl_tRNA 98.5 2.6E-07 5.7E-12 85.1 6.9 94 69-166 176-274 (311)
159 PRK14179 bifunctional 5,10-met 98.5 6.3E-07 1.4E-11 80.2 8.6 79 67-168 154-233 (284)
160 PF01113 DapB_N: Dihydrodipico 98.4 1.4E-06 3.1E-11 68.8 8.9 111 72-190 1-122 (124)
161 TIGR01921 DAP-DH diaminopimela 98.4 2.8E-06 6.2E-11 77.5 10.9 109 71-188 3-118 (324)
162 PRK13301 putative L-aspartate 98.4 3.4E-06 7.3E-11 74.4 10.7 105 72-184 3-115 (267)
163 TIGR01723 hmd_TIGR 5,10-methen 98.4 4.8E-05 1E-09 66.5 17.3 113 114-233 126-241 (340)
164 PRK00048 dihydrodipicolinate r 98.4 3.3E-06 7.1E-11 75.6 10.4 99 72-177 2-104 (257)
165 PRK00258 aroE shikimate 5-dehy 98.4 1.4E-06 3E-11 79.1 8.1 116 69-188 121-242 (278)
166 PRK13303 L-aspartate dehydroge 98.4 3.5E-06 7.5E-11 75.8 10.6 107 72-185 2-115 (265)
167 TIGR02371 ala_DH_arch alanine 98.4 1.2E-06 2.6E-11 81.2 7.7 93 70-170 127-227 (325)
168 cd01080 NAD_bind_m-THF_DH_Cycl 98.3 2.6E-06 5.5E-11 70.9 8.2 79 68-169 41-120 (168)
169 PRK00961 H(2)-dependent methyl 98.3 7.3E-05 1.6E-09 65.3 17.1 112 114-233 128-243 (342)
170 PRK12549 shikimate 5-dehydroge 98.3 2.5E-06 5.4E-11 77.4 8.5 113 69-188 125-248 (284)
171 PLN00203 glutamyl-tRNA reducta 98.3 2.1E-06 4.5E-11 83.9 7.2 70 69-138 264-340 (519)
172 PRK09310 aroDE bifunctional 3- 98.3 4.3E-06 9.3E-11 81.4 9.4 105 69-188 330-437 (477)
173 PRK07340 ornithine cyclodeamin 98.2 6.3E-06 1.4E-10 75.6 9.6 94 69-171 123-223 (304)
174 COG0673 MviM Predicted dehydro 98.2 1.1E-05 2.4E-10 75.4 11.0 109 71-186 3-121 (342)
175 PRK08618 ornithine cyclodeamin 98.2 6.2E-06 1.4E-10 76.5 8.4 92 70-170 126-226 (325)
176 PRK14189 bifunctional 5,10-met 98.2 8E-06 1.7E-10 73.2 8.6 79 67-168 154-233 (285)
177 TIGR00036 dapB dihydrodipicoli 98.2 1.9E-05 4.1E-10 71.0 11.1 113 72-191 2-126 (266)
178 smart00859 Semialdhyde_dh Semi 98.2 6.6E-06 1.4E-10 64.9 7.1 92 73-168 1-102 (122)
179 PRK14175 bifunctional 5,10-met 98.2 9.4E-06 2E-10 72.9 8.8 77 68-167 155-232 (286)
180 TIGR01763 MalateDH_bact malate 98.2 1.5E-05 3.3E-10 73.1 10.2 65 72-137 2-79 (305)
181 TIGR01035 hemA glutamyl-tRNA r 98.1 4.5E-06 9.8E-11 80.0 6.6 71 69-139 178-252 (417)
182 PRK00045 hemA glutamyl-tRNA re 98.1 2.5E-06 5.5E-11 82.0 4.9 71 69-139 180-254 (423)
183 cd01078 NAD_bind_H4MPT_DH NADP 98.1 6E-06 1.3E-10 70.8 6.7 97 69-171 26-135 (194)
184 COG2423 Predicted ornithine cy 98.1 9.7E-06 2.1E-10 74.4 8.4 111 72-190 131-250 (330)
185 PF13380 CoA_binding_2: CoA bi 98.1 9.3E-06 2E-10 63.3 7.2 104 72-189 1-108 (116)
186 PRK06823 ornithine cyclodeamin 98.1 8.6E-06 1.9E-10 74.9 7.9 94 70-171 127-228 (315)
187 PRK06407 ornithine cyclodeamin 98.1 8E-06 1.7E-10 74.7 7.6 93 70-170 116-217 (301)
188 PF01262 AlaDh_PNT_C: Alanine 98.1 4.5E-06 9.7E-11 69.8 5.4 96 69-166 18-140 (168)
189 COG0373 HemA Glutamyl-tRNA red 98.1 7.6E-06 1.7E-10 76.8 7.2 68 69-136 176-247 (414)
190 TIGR02992 ectoine_eutC ectoine 98.1 1.1E-05 2.4E-10 74.9 7.9 92 70-169 128-228 (326)
191 PTZ00117 malate dehydrogenase; 98.1 2.6E-05 5.7E-10 72.1 10.0 66 69-135 3-81 (319)
192 PRK06223 malate dehydrogenase; 98.0 2.8E-05 6E-10 71.7 9.8 63 72-135 3-78 (307)
193 PRK06046 alanine dehydrogenase 98.0 1.2E-05 2.6E-10 74.6 7.4 92 70-170 128-228 (326)
194 PRK11579 putative oxidoreducta 98.0 5.3E-05 1.2E-09 71.0 11.8 107 71-186 4-118 (346)
195 PRK08291 ectoine utilization p 98.0 1.6E-05 3.5E-10 73.9 8.2 89 70-166 131-228 (330)
196 TIGR01761 thiaz-red thiazoliny 98.0 6.8E-05 1.5E-09 69.6 12.0 108 72-187 4-119 (343)
197 PLN02819 lysine-ketoglutarate 98.0 3.8E-05 8.1E-10 80.4 11.0 112 69-188 567-701 (1042)
198 PF00984 UDPG_MGDP_dh: UDP-glu 98.0 0.00013 2.8E-09 54.6 11.0 91 235-336 2-94 (96)
199 cd01076 NAD_bind_1_Glu_DH NAD( 98.0 3.3E-05 7.1E-10 67.6 9.0 109 69-188 29-157 (227)
200 PF10100 DUF2338: Uncharacteri 98.0 0.0012 2.6E-08 61.2 19.2 265 72-341 2-395 (429)
201 cd05191 NAD_bind_amino_acid_DH 98.0 3.6E-05 7.7E-10 56.6 7.7 65 69-165 21-86 (86)
202 PF02882 THF_DHG_CYH_C: Tetrah 98.0 3.1E-05 6.8E-10 63.6 8.1 79 68-169 33-112 (160)
203 PF01118 Semialdhyde_dh: Semia 98.0 2.1E-05 4.5E-10 61.9 6.7 89 73-168 1-100 (121)
204 cd05211 NAD_bind_Glu_Leu_Phe_V 98.0 5.4E-05 1.2E-09 65.8 9.7 110 69-188 21-148 (217)
205 PTZ00082 L-lactate dehydrogena 98.0 4E-05 8.7E-10 70.8 9.0 66 69-135 4-82 (321)
206 PRK10792 bifunctional 5,10-met 97.9 4.3E-05 9.2E-10 68.5 8.7 78 67-167 155-233 (285)
207 cd05311 NAD_bind_2_malic_enz N 97.9 6.6E-05 1.4E-09 65.8 9.6 107 69-185 23-145 (226)
208 cd05212 NAD_bind_m-THF_DH_Cycl 97.9 7.6E-05 1.6E-09 60.0 9.1 78 68-168 25-103 (140)
209 COG0499 SAM1 S-adenosylhomocys 97.9 1.4E-05 3E-10 72.4 5.3 94 69-169 207-300 (420)
210 PF02423 OCD_Mu_crystall: Orni 97.9 1.2E-05 2.5E-10 74.2 5.1 95 70-170 127-229 (313)
211 cd05297 GH4_alpha_glucosidase_ 97.9 2.5E-05 5.4E-10 75.0 7.4 66 72-137 1-84 (423)
212 PRK14192 bifunctional 5,10-met 97.9 4.1E-05 8.9E-10 69.2 8.4 78 67-167 155-233 (283)
213 TIGR00561 pntA NAD(P) transhyd 97.9 3.2E-05 7E-10 75.0 8.1 96 69-167 162-286 (511)
214 PRK13940 glutamyl-tRNA reducta 97.9 1.8E-05 3.9E-10 75.5 6.2 70 69-138 179-253 (414)
215 PRK07589 ornithine cyclodeamin 97.9 2.4E-05 5.2E-10 72.7 6.7 94 71-170 129-230 (346)
216 PRK00066 ldh L-lactate dehydro 97.9 8.5E-05 1.8E-09 68.5 10.1 69 69-137 4-83 (315)
217 cd05291 HicDH_like L-2-hydroxy 97.9 9E-05 1.9E-09 68.2 10.1 66 72-138 1-79 (306)
218 PRK04148 hypothetical protein; 97.9 7.5E-05 1.6E-09 59.1 8.0 92 70-166 16-112 (134)
219 PRK06199 ornithine cyclodeamin 97.9 2.4E-05 5.2E-10 73.8 6.2 91 71-166 155-260 (379)
220 PRK10206 putative oxidoreducta 97.9 0.00011 2.4E-09 68.8 10.5 108 72-186 2-118 (344)
221 PRK06349 homoserine dehydrogen 97.9 5.5E-05 1.2E-09 72.8 8.4 111 71-187 3-127 (426)
222 TIGR01809 Shik-DH-AROM shikima 97.8 7.8E-05 1.7E-09 67.7 8.8 118 69-188 123-252 (282)
223 cd01079 NAD_bind_m-THF_DH NAD 97.8 7.9E-05 1.7E-09 62.7 8.0 91 68-168 59-159 (197)
224 PRK14176 bifunctional 5,10-met 97.8 8.1E-05 1.8E-09 66.8 8.6 78 67-167 160-238 (287)
225 PRK12548 shikimate 5-dehydroge 97.8 0.00011 2.3E-09 67.1 9.5 115 69-188 124-257 (289)
226 PRK05472 redox-sensing transcr 97.8 2.4E-05 5.2E-10 68.0 5.1 107 71-180 84-200 (213)
227 cd01339 LDH-like_MDH L-lactate 97.8 7.3E-05 1.6E-09 68.6 8.5 62 74-136 1-75 (300)
228 COG0686 Ald Alanine dehydrogen 97.8 1.9E-05 4E-10 70.3 4.2 95 69-166 166-269 (371)
229 PF00056 Ldh_1_N: lactate/mala 97.8 3.5E-05 7.6E-10 62.3 5.5 65 72-136 1-78 (141)
230 COG0569 TrkA K+ transport syst 97.8 5E-05 1.1E-09 66.5 6.8 73 72-145 1-83 (225)
231 PRK11861 bifunctional prephena 97.8 0.00023 4.9E-09 72.6 12.6 112 131-246 1-124 (673)
232 PRK14191 bifunctional 5,10-met 97.8 8.3E-05 1.8E-09 66.7 8.1 79 67-168 153-232 (285)
233 PRK08300 acetaldehyde dehydrog 97.8 0.00014 3.1E-09 65.8 9.3 93 69-168 2-104 (302)
234 PRK09424 pntA NAD(P) transhydr 97.8 5.6E-05 1.2E-09 73.6 6.8 96 69-166 163-286 (509)
235 TIGR03215 ac_ald_DH_ac acetald 97.7 0.00016 3.5E-09 65.2 9.1 89 72-167 2-97 (285)
236 TIGR02717 AcCoA-syn-alpha acet 97.7 0.00025 5.3E-09 68.7 11.0 110 69-189 5-127 (447)
237 PF03435 Saccharop_dh: Sacchar 97.7 5.8E-05 1.3E-09 71.9 6.6 107 74-188 1-120 (386)
238 cd00650 LDH_MDH_like NAD-depen 97.7 0.00012 2.7E-09 65.8 8.0 62 74-135 1-78 (263)
239 COG2910 Putative NADH-flavin r 97.7 5.6E-05 1.2E-09 62.3 5.2 65 72-136 1-71 (211)
240 PF03447 NAD_binding_3: Homose 97.7 0.00014 2.9E-09 56.9 7.2 103 78-187 1-115 (117)
241 TIGR02354 thiF_fam2 thiamine b 97.7 0.00012 2.6E-09 62.9 7.4 35 69-103 19-54 (200)
242 PRK14178 bifunctional 5,10-met 97.7 0.00013 2.8E-09 65.2 7.8 78 67-167 148-226 (279)
243 PRK06718 precorrin-2 dehydroge 97.7 0.00039 8.4E-09 59.9 10.4 76 69-145 8-87 (202)
244 PRK04207 glyceraldehyde-3-phos 97.7 0.00016 3.4E-09 67.5 8.5 88 72-166 2-110 (341)
245 PRK14183 bifunctional 5,10-met 97.7 0.00018 3.9E-09 64.3 8.4 79 67-168 153-232 (281)
246 PRK14170 bifunctional 5,10-met 97.7 0.00021 4.5E-09 64.0 8.7 79 67-168 153-232 (284)
247 cd05292 LDH_2 A subgroup of L- 97.7 0.0001 2.2E-09 67.8 7.0 66 72-138 1-78 (308)
248 COG0169 AroE Shikimate 5-dehyd 97.7 0.00016 3.5E-09 65.1 8.0 113 69-188 124-247 (283)
249 PRK14027 quinate/shikimate deh 97.6 0.00019 4.2E-09 65.0 8.2 113 69-188 125-250 (283)
250 cd05293 LDH_1 A subgroup of L- 97.6 0.00041 8.9E-09 63.8 10.4 63 72-135 4-79 (312)
251 KOG2741 Dimeric dihydrodiol de 97.6 0.00059 1.3E-08 62.0 10.7 112 71-189 6-129 (351)
252 PRK00683 murD UDP-N-acetylmura 97.6 0.0011 2.3E-08 64.0 13.2 67 72-138 4-70 (418)
253 PLN02516 methylenetetrahydrofo 97.6 0.00029 6.2E-09 63.7 8.6 79 67-168 163-242 (299)
254 COG4408 Uncharacterized protei 97.6 0.014 3E-07 52.6 18.4 266 71-341 4-397 (431)
255 PRK14177 bifunctional 5,10-met 97.6 0.00037 8E-09 62.5 8.7 79 67-168 155-234 (284)
256 PRK14182 bifunctional 5,10-met 97.6 0.00036 7.7E-09 62.5 8.6 79 67-168 153-232 (282)
257 PRK14173 bifunctional 5,10-met 97.6 0.00038 8.1E-09 62.6 8.7 79 67-168 151-230 (287)
258 PRK14186 bifunctional 5,10-met 97.6 0.00036 7.8E-09 63.0 8.5 78 68-168 155-233 (297)
259 PRK14172 bifunctional 5,10-met 97.6 0.00037 8E-09 62.4 8.4 77 68-167 155-232 (278)
260 PRK14169 bifunctional 5,10-met 97.6 0.00038 8.2E-09 62.4 8.5 78 67-167 152-230 (282)
261 PRK06719 precorrin-2 dehydroge 97.5 0.00075 1.6E-08 55.6 9.6 74 69-145 11-87 (157)
262 KOG1370 S-adenosylhomocysteine 97.5 0.00016 3.6E-09 64.0 5.9 94 69-169 212-305 (434)
263 PRK14166 bifunctional 5,10-met 97.5 0.00042 9E-09 62.2 8.5 78 67-167 153-231 (282)
264 PRK14171 bifunctional 5,10-met 97.5 0.00043 9.3E-09 62.2 8.6 78 67-167 155-233 (288)
265 PLN02897 tetrahydrofolate dehy 97.5 0.00038 8.3E-09 63.8 8.3 78 67-167 210-288 (345)
266 PRK00436 argC N-acetyl-gamma-g 97.5 0.00037 8.1E-09 65.1 8.5 91 72-170 3-104 (343)
267 PRK09496 trkA potassium transp 97.5 0.00026 5.7E-09 68.9 7.7 67 72-138 1-76 (453)
268 TIGR02356 adenyl_thiF thiazole 97.5 0.00015 3.2E-09 62.5 5.2 36 69-104 19-55 (202)
269 TIGR01850 argC N-acetyl-gamma- 97.5 0.0004 8.7E-09 65.0 8.4 93 72-171 1-105 (346)
270 PRK14180 bifunctional 5,10-met 97.5 0.00047 1E-08 61.8 8.4 77 68-167 155-232 (282)
271 PRK14190 bifunctional 5,10-met 97.5 0.00045 9.6E-09 62.1 8.3 79 67-168 154-233 (284)
272 PRK10669 putative cation:proto 97.5 0.00086 1.9E-08 67.1 11.2 87 72-162 418-512 (558)
273 PRK14187 bifunctional 5,10-met 97.5 0.00051 1.1E-08 61.9 8.5 78 67-167 156-234 (294)
274 PRK03659 glutathione-regulated 97.5 0.00066 1.4E-08 68.3 10.3 88 71-162 400-495 (601)
275 PF02254 TrkA_N: TrkA-N domain 97.5 0.00067 1.5E-08 52.7 8.2 85 74-162 1-93 (116)
276 PRK12749 quinate/shikimate deh 97.5 0.00059 1.3E-08 62.1 8.9 115 69-188 122-254 (288)
277 PRK14982 acyl-ACP reductase; P 97.5 0.00025 5.3E-09 65.6 6.5 112 68-192 152-268 (340)
278 COG0190 FolD 5,10-methylene-te 97.5 0.00043 9.4E-09 61.4 7.7 81 66-169 151-232 (283)
279 PRK14193 bifunctional 5,10-met 97.5 0.00057 1.2E-08 61.3 8.6 79 67-168 154-235 (284)
280 TIGR01546 GAPDH-II_archae glyc 97.5 0.0002 4.4E-09 65.9 5.9 67 74-140 1-88 (333)
281 PRK05678 succinyl-CoA syntheta 97.5 0.0017 3.7E-08 58.8 11.8 114 70-192 7-125 (291)
282 TIGR01019 sucCoAalpha succinyl 97.5 0.0013 2.8E-08 59.5 10.9 114 71-192 6-123 (286)
283 PLN02616 tetrahydrofolate dehy 97.4 0.00058 1.3E-08 62.9 8.4 78 67-167 227-305 (364)
284 PRK00676 hemA glutamyl-tRNA re 97.4 0.00027 5.9E-09 65.0 6.2 62 68-134 171-233 (338)
285 PRK09414 glutamate dehydrogena 97.4 0.0008 1.7E-08 64.4 9.4 113 67-188 228-365 (445)
286 PRK01710 murD UDP-N-acetylmura 97.4 0.002 4.3E-08 62.8 12.4 117 69-185 12-145 (458)
287 PRK14181 bifunctional 5,10-met 97.4 0.00079 1.7E-08 60.5 8.5 79 67-168 149-232 (287)
288 COG1064 AdhP Zn-dependent alco 97.4 0.00063 1.4E-08 62.5 7.8 87 70-164 166-258 (339)
289 PLN02477 glutamate dehydrogena 97.4 0.00094 2E-08 63.4 9.2 110 68-188 203-332 (410)
290 PF13241 NAD_binding_7: Putati 97.4 0.00031 6.8E-09 53.5 4.9 72 69-145 5-77 (103)
291 PRK01390 murD UDP-N-acetylmura 97.4 0.0019 4.2E-08 63.0 11.7 66 69-134 7-72 (460)
292 PF10728 DUF2520: Domain of un 97.4 0.0018 4E-08 51.5 9.4 126 205-337 4-129 (132)
293 cd05313 NAD_bind_2_Glu_DH NAD( 97.4 0.0017 3.7E-08 57.5 10.1 111 68-188 35-175 (254)
294 PRK02318 mannitol-1-phosphate 97.4 0.00045 9.8E-09 65.6 6.9 73 72-145 1-97 (381)
295 cd00300 LDH_like L-lactate deh 97.3 0.0013 2.7E-08 60.4 9.4 63 74-137 1-76 (300)
296 PLN02602 lactate dehydrogenase 97.3 0.0011 2.3E-08 61.9 9.0 64 72-136 38-114 (350)
297 cd01483 E1_enzyme_family Super 97.3 0.0026 5.6E-08 51.5 10.2 113 73-193 1-124 (143)
298 PLN02968 Probable N-acetyl-gam 97.3 0.00074 1.6E-08 63.8 7.9 96 69-172 36-141 (381)
299 PRK03369 murD UDP-N-acetylmura 97.3 0.0018 3.9E-08 63.7 10.8 67 69-135 10-78 (488)
300 PF02629 CoA_binding: CoA bind 97.3 0.0005 1.1E-08 51.7 5.4 72 72-145 4-79 (96)
301 cd05294 LDH-like_MDH_nadp A la 97.3 0.00073 1.6E-08 62.2 7.5 65 72-137 1-82 (309)
302 PRK06270 homoserine dehydrogen 97.3 0.0008 1.7E-08 62.9 7.8 114 72-187 3-148 (341)
303 PRK14168 bifunctional 5,10-met 97.3 0.0013 2.8E-08 59.5 8.4 78 67-167 157-239 (297)
304 PRK14185 bifunctional 5,10-met 97.3 0.0013 2.9E-08 59.2 8.4 78 67-167 153-235 (293)
305 PF03720 UDPG_MGDP_dh_C: UDP-g 97.3 0.00034 7.3E-09 53.6 3.9 82 82-166 18-102 (106)
306 PRK06392 homoserine dehydrogen 97.3 0.00072 1.6E-08 62.5 6.8 113 72-187 1-139 (326)
307 PRK03562 glutathione-regulated 97.2 0.0021 4.6E-08 64.9 10.7 74 72-145 401-482 (621)
308 COG0771 MurD UDP-N-acetylmuram 97.2 0.0019 4E-08 61.9 9.7 126 70-195 6-148 (448)
309 PRK02472 murD UDP-N-acetylmura 97.2 0.0046 9.9E-08 60.1 12.7 115 69-183 3-134 (447)
310 cd01338 MDH_choloroplast_like 97.2 0.0012 2.6E-08 61.0 7.9 67 71-137 2-88 (322)
311 PRK05086 malate dehydrogenase; 97.2 0.0034 7.4E-08 57.8 10.8 66 72-137 1-79 (312)
312 TIGR01759 MalateDH-SF1 malate 97.2 0.0021 4.5E-08 59.4 9.3 66 71-136 3-88 (323)
313 PRK08374 homoserine dehydrogen 97.2 0.0014 3E-08 61.1 8.2 117 72-195 3-154 (336)
314 PF00208 ELFV_dehydrog: Glutam 97.2 0.00097 2.1E-08 59.0 6.9 112 69-188 30-168 (244)
315 PF13460 NAD_binding_10: NADH( 97.2 0.00077 1.7E-08 56.8 6.0 62 74-137 1-70 (183)
316 PRK12475 thiamine/molybdopteri 97.2 0.0013 2.9E-08 61.1 7.9 36 69-104 22-58 (338)
317 PRK12550 shikimate 5-dehydroge 97.2 0.0018 3.9E-08 58.4 8.5 108 71-188 122-237 (272)
318 PRK14167 bifunctional 5,10-met 97.2 0.0019 4.1E-08 58.4 8.4 78 68-168 154-236 (297)
319 PLN02520 bifunctional 3-dehydr 97.1 0.002 4.3E-08 63.7 9.1 113 69-188 377-496 (529)
320 PRK14174 bifunctional 5,10-met 97.1 0.002 4.3E-08 58.4 8.2 78 67-167 155-237 (295)
321 TIGR01470 cysG_Nterm siroheme 97.1 0.023 4.9E-07 49.0 14.5 68 69-137 7-79 (205)
322 PRK14184 bifunctional 5,10-met 97.1 0.002 4.3E-08 58.0 7.9 77 67-166 153-234 (286)
323 PRK05442 malate dehydrogenase; 97.1 0.003 6.4E-08 58.5 9.2 67 70-136 3-89 (326)
324 PRK08306 dipicolinate synthase 97.0 0.0027 5.9E-08 58.1 8.3 110 71-188 2-119 (296)
325 cd01487 E1_ThiF_like E1_ThiF_l 97.0 0.0025 5.3E-08 53.5 7.4 32 73-104 1-33 (174)
326 PRK00141 murD UDP-N-acetylmura 97.0 0.0049 1.1E-07 60.3 10.6 66 69-134 13-81 (473)
327 PLN02383 aspartate semialdehyd 97.0 0.0018 4E-08 60.3 7.1 92 69-167 5-102 (344)
328 CHL00194 ycf39 Ycf39; Provisio 97.0 0.0015 3.2E-08 60.5 6.3 65 72-136 1-73 (317)
329 PRK00421 murC UDP-N-acetylmura 97.0 0.0038 8.2E-08 61.0 9.3 116 69-184 5-134 (461)
330 PRK14874 aspartate-semialdehyd 97.0 0.0021 4.6E-08 59.8 7.1 89 72-167 2-96 (334)
331 cd01337 MDH_glyoxysomal_mitoch 97.0 0.003 6.4E-08 58.0 7.7 66 72-137 1-78 (310)
332 PRK14106 murD UDP-N-acetylmura 96.9 0.006 1.3E-07 59.4 10.3 68 69-136 3-77 (450)
333 PTZ00325 malate dehydrogenase; 96.9 0.0018 3.9E-08 59.7 6.2 69 69-137 6-86 (321)
334 PLN00112 malate dehydrogenase 96.9 0.0058 1.3E-07 58.6 9.8 68 70-137 99-186 (444)
335 PLN00106 malate dehydrogenase 96.9 0.0075 1.6E-07 55.7 10.2 68 69-136 16-95 (323)
336 cd05290 LDH_3 A subgroup of L- 96.9 0.0019 4E-08 59.3 6.1 64 73-136 1-77 (307)
337 COG1648 CysG Siroheme synthase 96.9 0.019 4.2E-07 49.5 11.9 70 69-139 10-84 (210)
338 cd01336 MDH_cytoplasmic_cytoso 96.9 0.0097 2.1E-07 55.2 10.4 66 71-136 2-87 (325)
339 PRK14031 glutamate dehydrogena 96.9 0.0075 1.6E-07 57.7 9.8 113 67-188 224-364 (444)
340 PF08546 ApbA_C: Ketopantoate 96.9 0.0062 1.3E-07 48.0 7.9 81 251-338 40-124 (125)
341 COG0460 ThrA Homoserine dehydr 96.9 0.0042 9.1E-08 56.9 7.7 122 71-196 3-146 (333)
342 PF00393 6PGD: 6-phosphoglucon 96.8 0.0044 9.6E-08 55.7 7.6 96 237-332 1-106 (291)
343 TIGR01772 MDH_euk_gproteo mala 96.8 0.0051 1.1E-07 56.5 8.3 65 73-137 1-77 (312)
344 COG0026 PurK Phosphoribosylami 96.8 0.0032 7E-08 57.9 6.8 65 72-136 2-74 (375)
345 PRK09496 trkA potassium transp 96.8 0.0047 1E-07 60.1 8.5 70 69-138 229-308 (453)
346 PRK08644 thiamine biosynthesis 96.8 0.0043 9.4E-08 53.8 7.3 35 69-103 26-61 (212)
347 COG0289 DapB Dihydrodipicolina 96.8 0.0091 2E-07 52.5 9.2 104 71-181 2-117 (266)
348 COG2344 AT-rich DNA-binding pr 96.8 0.0017 3.7E-08 53.8 4.4 68 70-137 83-156 (211)
349 COG0002 ArgC Acetylglutamate s 96.8 0.0058 1.3E-07 55.9 8.2 100 71-177 2-113 (349)
350 COG0300 DltE Short-chain dehyd 96.8 0.0049 1.1E-07 54.9 7.5 86 69-164 4-91 (265)
351 PRK15076 alpha-galactosidase; 96.8 0.0015 3.3E-08 62.8 4.7 66 72-137 2-85 (431)
352 PTZ00079 NADP-specific glutama 96.8 0.005 1.1E-07 58.8 7.8 113 67-188 233-374 (454)
353 cd00704 MDH Malate dehydrogena 96.8 0.005 1.1E-07 57.0 7.7 64 73-136 2-85 (323)
354 PRK02006 murD UDP-N-acetylmura 96.7 0.021 4.5E-07 56.4 12.3 66 69-134 5-76 (498)
355 PRK01438 murD UDP-N-acetylmura 96.7 0.0083 1.8E-07 58.9 9.3 115 69-183 14-148 (480)
356 PF00899 ThiF: ThiF family; I 96.7 0.0049 1.1E-07 49.3 6.4 115 71-193 2-127 (135)
357 PF05368 NmrA: NmrA-like famil 96.7 0.0041 8.8E-08 54.7 6.3 64 74-137 1-74 (233)
358 PRK14030 glutamate dehydrogena 96.7 0.0076 1.7E-07 57.6 8.3 111 68-188 225-365 (445)
359 PLN02353 probable UDP-glucose 96.7 0.014 3E-07 56.9 10.2 112 69-189 322-465 (473)
360 PRK04308 murD UDP-N-acetylmura 96.7 0.015 3.3E-07 56.5 10.6 117 69-185 3-138 (445)
361 TIGR01757 Malate-DH_plant mala 96.7 0.012 2.6E-07 55.5 9.5 68 70-137 43-130 (387)
362 COG0334 GdhA Glutamate dehydro 96.6 0.01 2.2E-07 55.6 8.7 109 69-188 205-333 (411)
363 PF00185 OTCace: Aspartate/orn 96.6 0.012 2.5E-07 48.6 8.3 95 71-165 2-120 (158)
364 PRK07688 thiamine/molybdopteri 96.6 0.013 2.9E-07 54.5 9.6 36 69-104 22-58 (339)
365 cd00757 ThiF_MoeB_HesA_family 96.6 0.006 1.3E-07 53.6 6.9 36 69-104 19-55 (228)
366 PRK11863 N-acetyl-gamma-glutam 96.6 0.0089 1.9E-07 54.8 8.1 80 71-167 2-83 (313)
367 TIGR01771 L-LDH-NAD L-lactate 96.6 0.0068 1.5E-07 55.5 7.3 62 76-137 1-74 (299)
368 PRK05671 aspartate-semialdehyd 96.6 0.0063 1.4E-07 56.6 7.1 89 70-167 3-99 (336)
369 TIGR01758 MDH_euk_cyt malate d 96.6 0.0077 1.7E-07 55.8 7.5 65 73-137 1-85 (324)
370 TIGR03366 HpnZ_proposed putati 96.6 0.015 3.3E-07 52.7 9.3 46 70-115 120-166 (280)
371 cd08230 glucose_DH Glucose deh 96.5 0.013 2.9E-07 55.0 9.0 89 70-165 172-269 (355)
372 cd01486 Apg7 Apg7 is an E1-lik 96.5 0.0074 1.6E-07 54.6 6.8 31 73-103 1-32 (307)
373 PRK03803 murD UDP-N-acetylmura 96.5 0.014 3E-07 56.8 9.3 116 71-186 6-137 (448)
374 PRK09880 L-idonate 5-dehydroge 96.5 0.016 3.5E-07 54.1 9.5 47 69-115 168-215 (343)
375 PRK05690 molybdopterin biosynt 96.5 0.011 2.4E-07 52.4 7.7 116 69-192 30-156 (245)
376 PRK05600 thiamine biosynthesis 96.5 0.0041 8.8E-08 58.7 5.1 35 69-103 39-74 (370)
377 COG0039 Mdh Malate/lactate deh 96.5 0.0063 1.4E-07 55.4 6.1 64 72-135 1-77 (313)
378 TIGR01851 argC_other N-acetyl- 96.5 0.013 2.9E-07 53.4 8.1 78 72-166 2-81 (310)
379 PRK08328 hypothetical protein; 96.4 0.024 5.3E-07 49.9 9.6 117 69-193 25-153 (231)
380 TIGR02355 moeB molybdopterin s 96.4 0.022 4.8E-07 50.4 9.3 117 69-193 22-149 (240)
381 COG5322 Predicted dehydrogenas 96.4 0.0078 1.7E-07 52.8 6.0 116 66-194 162-286 (351)
382 TIGR01296 asd_B aspartate-semi 96.4 0.0056 1.2E-07 57.1 5.6 86 73-166 1-93 (339)
383 TIGR01087 murD UDP-N-acetylmur 96.4 0.02 4.3E-07 55.5 9.4 113 73-186 1-131 (433)
384 cd01492 Aos1_SUMO Ubiquitin ac 96.4 0.027 5.8E-07 48.3 9.1 116 69-193 19-145 (197)
385 PRK08762 molybdopterin biosynt 96.4 0.01 2.3E-07 56.2 7.2 117 69-193 133-260 (376)
386 TIGR03649 ergot_EASG ergot alk 96.3 0.0058 1.3E-07 55.5 5.3 65 73-137 1-77 (285)
387 PRK15116 sulfur acceptor prote 96.3 0.1 2.2E-06 46.8 12.9 144 69-223 28-187 (268)
388 KOG0023 Alcohol dehydrogenase, 96.3 0.015 3.3E-07 52.5 7.5 67 70-136 181-255 (360)
389 PRK07478 short chain dehydroge 96.3 0.014 3.1E-07 51.8 7.5 42 69-110 4-46 (254)
390 TIGR01082 murC UDP-N-acetylmur 96.3 0.025 5.5E-07 55.0 9.7 111 74-184 2-126 (448)
391 COG1063 Tdh Threonine dehydrog 96.3 0.018 3.8E-07 54.1 8.3 89 72-167 170-271 (350)
392 PRK06139 short chain dehydroge 96.3 0.015 3.3E-07 54.1 7.8 42 69-110 5-47 (330)
393 PRK03806 murD UDP-N-acetylmura 96.3 0.04 8.8E-07 53.4 11.1 115 69-184 4-132 (438)
394 PRK08265 short chain dehydroge 96.3 0.02 4.3E-07 51.2 8.2 42 69-110 4-46 (261)
395 PRK12939 short chain dehydroge 96.3 0.017 3.8E-07 50.9 7.8 41 69-109 5-46 (250)
396 TIGR02964 xanthine_xdhC xanthi 96.3 0.02 4.2E-07 50.9 7.9 92 71-187 100-191 (246)
397 TIGR03855 NAD_NadX aspartate d 96.3 0.019 4.1E-07 50.3 7.7 84 97-187 5-93 (229)
398 PRK06728 aspartate-semialdehyd 96.2 0.011 2.5E-07 54.8 6.5 90 70-167 4-101 (347)
399 PRK05866 short chain dehydroge 96.2 0.02 4.4E-07 52.3 8.2 42 69-110 38-80 (293)
400 PF04016 DUF364: Domain of unk 96.2 0.0029 6.4E-08 51.4 2.2 90 69-169 9-99 (147)
401 TIGR03736 PRTRC_ThiF PRTRC sys 96.2 0.023 5.1E-07 50.1 8.0 35 70-104 10-55 (244)
402 COG1004 Ugd Predicted UDP-gluc 96.2 0.024 5.1E-07 52.9 8.0 89 69-163 308-406 (414)
403 PRK08664 aspartate-semialdehyd 96.1 0.018 3.9E-07 54.0 7.5 89 71-167 3-109 (349)
404 PRK08223 hypothetical protein; 96.1 0.033 7.1E-07 50.3 8.7 116 69-193 25-154 (287)
405 PRK12769 putative oxidoreducta 96.1 0.019 4E-07 58.7 8.1 36 69-104 325-360 (654)
406 PRK01368 murD UDP-N-acetylmura 96.1 0.033 7.1E-07 54.2 9.5 115 70-185 5-132 (454)
407 PRK03815 murD UDP-N-acetylmura 96.1 0.035 7.7E-07 53.1 9.5 107 72-183 1-115 (401)
408 PRK07774 short chain dehydroge 96.1 0.019 4.2E-07 50.7 7.4 39 69-107 4-43 (250)
409 PRK07523 gluconate 5-dehydroge 96.1 0.022 4.9E-07 50.6 7.7 40 69-108 8-48 (255)
410 PRK06019 phosphoribosylaminoim 96.1 0.014 3.1E-07 55.2 6.7 63 71-133 2-69 (372)
411 PRK06124 gluconate 5-dehydroge 96.1 0.024 5.3E-07 50.4 7.8 41 69-109 9-50 (256)
412 TIGR01381 E1_like_apg7 E1-like 96.1 0.01 2.2E-07 58.9 5.6 34 69-102 336-370 (664)
413 PRK04663 murD UDP-N-acetylmura 96.0 0.079 1.7E-06 51.4 11.7 112 72-184 8-135 (438)
414 PRK08040 putative semialdehyde 96.0 0.015 3.3E-07 53.9 6.3 90 70-167 3-99 (336)
415 PRK13394 3-hydroxybutyrate deh 96.0 0.023 5E-07 50.6 7.5 42 69-110 5-47 (262)
416 PRK12828 short chain dehydroge 96.0 0.043 9.3E-07 48.0 9.0 40 69-108 5-45 (239)
417 PRK07109 short chain dehydroge 96.0 0.026 5.7E-07 52.6 7.9 85 69-165 6-93 (334)
418 PRK05786 fabG 3-ketoacyl-(acyl 96.0 0.019 4.2E-07 50.3 6.7 42 69-110 3-45 (238)
419 PF00070 Pyr_redox: Pyridine n 96.0 0.016 3.4E-07 41.7 5.0 34 73-106 1-34 (80)
420 PLN03209 translocon at the inn 96.0 0.014 3.1E-07 57.6 6.3 42 69-110 78-120 (576)
421 PRK05876 short chain dehydroge 96.0 0.023 4.9E-07 51.4 7.2 40 69-108 4-44 (275)
422 COG1090 Predicted nucleoside-d 96.0 0.021 4.5E-07 50.7 6.5 60 78-137 6-66 (297)
423 PLN00141 Tic62-NAD(P)-related 96.0 0.018 3.9E-07 51.3 6.4 40 69-108 15-55 (251)
424 TIGR02853 spore_dpaA dipicolin 96.0 0.077 1.7E-06 48.3 10.5 109 72-188 2-118 (287)
425 PRK12809 putative oxidoreducta 96.0 0.028 6E-07 57.3 8.5 36 69-104 308-343 (639)
426 PRK07890 short chain dehydroge 96.0 0.026 5.6E-07 50.2 7.4 40 69-108 3-43 (258)
427 PRK06200 2,3-dihydroxy-2,3-dih 95.9 0.037 8E-07 49.5 8.4 42 69-110 4-46 (263)
428 PRK05653 fabG 3-ketoacyl-(acyl 95.9 0.029 6.4E-07 49.2 7.6 40 69-108 3-43 (246)
429 PRK14573 bifunctional D-alanyl 95.9 0.059 1.3E-06 56.5 10.8 115 70-184 3-131 (809)
430 PRK05867 short chain dehydroge 95.9 0.027 5.9E-07 50.0 7.3 42 69-110 7-49 (253)
431 PRK06172 short chain dehydroge 95.9 0.03 6.5E-07 49.7 7.5 41 69-109 5-46 (253)
432 PRK07326 short chain dehydroge 95.9 0.029 6.2E-07 49.2 7.3 41 69-109 4-45 (237)
433 COG0136 Asd Aspartate-semialde 95.9 0.027 5.8E-07 51.6 7.0 89 72-167 2-99 (334)
434 PRK07825 short chain dehydroge 95.9 0.034 7.4E-07 50.0 7.9 42 69-110 3-45 (273)
435 cd01485 E1-1_like Ubiquitin ac 95.9 0.089 1.9E-06 45.1 10.0 116 69-193 17-148 (198)
436 PLN02427 UDP-apiose/xylose syn 95.9 0.021 4.5E-07 54.3 6.8 67 69-135 12-94 (386)
437 PRK07454 short chain dehydroge 95.9 0.03 6.5E-07 49.3 7.3 40 70-109 5-45 (241)
438 PRK08589 short chain dehydroge 95.9 0.038 8.1E-07 49.8 8.1 39 69-108 4-43 (272)
439 PRK08862 short chain dehydroge 95.9 0.035 7.5E-07 48.7 7.6 85 69-165 3-91 (227)
440 PRK06182 short chain dehydroge 95.8 0.051 1.1E-06 48.9 8.8 40 71-110 3-43 (273)
441 cd00755 YgdL_like Family of ac 95.8 0.26 5.7E-06 43.3 12.9 151 69-233 9-182 (231)
442 TIGR00978 asd_EA aspartate-sem 95.8 0.025 5.4E-07 52.9 6.9 89 72-167 1-106 (341)
443 PF05222 AlaDh_PNT_N: Alanine 95.8 0.092 2E-06 42.1 9.2 99 84-194 17-119 (136)
444 KOG0399 Glutamate synthase [Am 95.8 0.028 6E-07 58.6 7.5 69 69-137 1783-1880(2142)
445 PRK07063 short chain dehydroge 95.8 0.03 6.6E-07 49.9 7.2 42 69-110 5-47 (260)
446 PRK07231 fabG 3-ketoacyl-(acyl 95.8 0.029 6.4E-07 49.5 7.1 41 69-109 3-44 (251)
447 KOG1502 Flavonol reductase/cin 95.8 0.03 6.5E-07 51.2 7.0 66 70-135 5-86 (327)
448 PRK02705 murD UDP-N-acetylmura 95.8 0.061 1.3E-06 52.5 9.8 112 73-184 2-136 (459)
449 PRK07576 short chain dehydroge 95.8 0.043 9.3E-07 49.2 8.1 41 68-108 6-47 (264)
450 cd05188 MDR Medium chain reduc 95.8 0.057 1.2E-06 48.0 8.9 92 69-167 133-234 (271)
451 PRK07067 sorbitol dehydrogenas 95.8 0.042 9.2E-07 48.9 8.0 42 69-110 4-46 (257)
452 TIGR00670 asp_carb_tr aspartat 95.8 0.091 2E-06 48.1 10.1 67 68-134 147-223 (301)
453 PLN00125 Succinyl-CoA ligase [ 95.8 0.14 3.1E-06 46.6 11.2 113 70-191 11-129 (300)
454 PRK05597 molybdopterin biosynt 95.8 0.05 1.1E-06 51.1 8.7 36 69-104 26-62 (355)
455 TIGR01318 gltD_gamma_fam gluta 95.8 0.037 8.1E-07 54.1 8.1 36 69-104 139-174 (467)
456 PRK10538 malonic semialdehyde 95.8 0.042 9E-07 48.7 7.8 38 72-109 1-39 (248)
457 COG4221 Short-chain alcohol de 95.8 0.048 1E-06 47.6 7.7 86 69-166 4-90 (246)
458 TIGR02822 adh_fam_2 zinc-bindi 95.7 0.049 1.1E-06 50.6 8.5 89 70-165 165-254 (329)
459 TIGR01202 bchC 2-desacetyl-2-h 95.7 0.047 1E-06 50.3 8.3 88 69-165 143-231 (308)
460 PRK04690 murD UDP-N-acetylmura 95.7 0.067 1.4E-06 52.4 9.7 115 69-183 6-141 (468)
461 PRK06398 aldose dehydrogenase; 95.7 0.044 9.5E-07 49.0 7.9 37 69-105 4-41 (258)
462 PRK06194 hypothetical protein; 95.7 0.034 7.4E-07 50.4 7.3 41 69-109 4-45 (287)
463 PRK12429 3-hydroxybutyrate deh 95.7 0.038 8.2E-07 49.0 7.4 41 69-109 2-43 (258)
464 PRK06057 short chain dehydroge 95.7 0.062 1.3E-06 47.8 8.8 40 69-108 5-45 (255)
465 KOG3007 Mu-crystallin [Amino a 95.7 0.035 7.5E-07 48.8 6.7 109 72-189 139-260 (333)
466 PRK12826 3-ketoacyl-(acyl-carr 95.7 0.031 6.8E-07 49.3 6.8 39 69-107 4-43 (251)
467 PRK05872 short chain dehydroge 95.7 0.062 1.4E-06 49.1 8.9 42 69-110 7-49 (296)
468 TIGR03466 HpnA hopanoid-associ 95.7 0.017 3.7E-07 53.3 5.2 64 72-135 1-72 (328)
469 PRK06813 homoserine dehydrogen 95.7 0.06 1.3E-06 50.2 8.7 121 72-194 3-153 (346)
470 PRK06598 aspartate-semialdehyd 95.7 0.028 6E-07 52.7 6.4 87 72-166 2-99 (369)
471 PRK05854 short chain dehydroge 95.7 0.07 1.5E-06 49.2 9.2 41 69-109 12-53 (313)
472 PRK07814 short chain dehydroge 95.7 0.04 8.7E-07 49.3 7.4 41 69-109 8-49 (263)
473 PRK00856 pyrB aspartate carbam 95.7 0.04 8.6E-07 50.5 7.3 66 68-135 153-221 (305)
474 PLN02662 cinnamyl-alcohol dehy 95.7 0.044 9.5E-07 50.5 7.8 66 70-135 3-84 (322)
475 TIGR03026 NDP-sugDHase nucleot 95.6 0.054 1.2E-06 52.0 8.5 89 69-164 311-409 (411)
476 TIGR01532 E4PD_g-proteo D-eryt 95.6 0.035 7.6E-07 51.3 6.8 29 73-101 1-33 (325)
477 PRK08217 fabG 3-ketoacyl-(acyl 95.6 0.046 1E-06 48.2 7.5 40 69-108 3-43 (253)
478 PRK12829 short chain dehydroge 95.6 0.044 9.5E-07 48.8 7.4 42 69-110 9-51 (264)
479 PLN02896 cinnamyl-alcohol dehy 95.6 0.032 6.8E-07 52.4 6.7 39 69-107 8-47 (353)
480 TIGR03325 BphB_TodD cis-2,3-di 95.6 0.054 1.2E-06 48.4 8.0 42 69-110 3-45 (262)
481 PRK08213 gluconate 5-dehydroge 95.6 0.045 9.8E-07 48.7 7.4 40 69-108 10-50 (259)
482 PRK07062 short chain dehydroge 95.6 0.083 1.8E-06 47.2 9.1 41 69-109 6-47 (265)
483 PRK05717 oxidoreductase; Valid 95.6 0.063 1.4E-06 47.7 8.3 40 69-108 8-48 (255)
484 KOG0022 Alcohol dehydrogenase, 95.5 0.062 1.3E-06 48.5 7.7 54 69-122 191-245 (375)
485 TIGR03201 dearomat_had 6-hydro 95.5 0.07 1.5E-06 50.0 8.8 45 70-114 166-210 (349)
486 PRK08085 gluconate 5-dehydroge 95.5 0.054 1.2E-06 48.1 7.7 41 69-109 7-48 (254)
487 PLN02948 phosphoribosylaminoim 95.5 0.053 1.1E-06 54.3 8.2 67 69-135 20-91 (577)
488 PRK09186 flagellin modificatio 95.5 0.062 1.3E-06 47.7 8.0 42 69-110 2-44 (256)
489 PLN02214 cinnamoyl-CoA reducta 95.5 0.046 1E-06 51.1 7.4 68 69-136 8-90 (342)
490 PLN02780 ketoreductase/ oxidor 95.5 0.037 8E-07 51.3 6.7 41 70-110 52-93 (320)
491 PRK08340 glucose-1-dehydrogena 95.5 0.051 1.1E-06 48.5 7.3 38 72-109 1-39 (259)
492 PRK09242 tropinone reductase; 95.5 0.082 1.8E-06 47.0 8.6 41 69-109 7-48 (257)
493 PRK07060 short chain dehydroge 95.5 0.037 8.1E-07 48.7 6.4 42 69-110 7-49 (245)
494 PRK00517 prmA ribosomal protei 95.4 0.092 2E-06 46.8 8.8 110 69-188 118-235 (250)
495 PRK12814 putative NADPH-depend 95.4 0.063 1.4E-06 54.8 8.7 68 69-136 191-287 (652)
496 TIGR02130 dapB_plant dihydrodi 95.4 0.19 4.2E-06 45.0 10.7 89 73-168 2-103 (275)
497 PRK07984 enoyl-(acyl carrier p 95.4 0.068 1.5E-06 48.0 8.0 35 69-103 4-41 (262)
498 cd01488 Uba3_RUB Ubiquitin act 95.4 0.055 1.2E-06 49.1 7.4 31 73-103 1-32 (291)
499 PRK08628 short chain dehydroge 95.4 0.068 1.5E-06 47.5 8.0 39 69-107 5-44 (258)
500 PRK06500 short chain dehydroge 95.4 0.069 1.5E-06 47.1 8.0 40 69-108 4-44 (249)
No 1
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=100.00 E-value=4.1e-51 Score=361.52 Aligned_cols=285 Identities=40% Similarity=0.647 Sum_probs=276.7
Q ss_pred CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccc-hhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhccccc
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK-CDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG 150 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~-~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~ 150 (359)
+||+|||+|.||..+|.+|.+.||+|++|||++++ .+.+.+.|.....++.|+++++|+||+++|.+++++.++++...
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g 80 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG 80 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence 47999999999999999999999999999999988 56666779999999999999999999999999999999988788
Q ss_pred ccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCCeEE
Q 018213 151 AASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFY 230 (359)
Q Consensus 151 ~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~lg~~~~~ 230 (359)
+.+.+++|+++||+|+.+|...+.+.+.++.+|+.|+|+|++|++.....++++++++|+++.+++++++|+.+|.++++
T Consensus 81 ~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~~~A~~GtLtimvGG~~~~f~r~~pvl~~~g~~i~~ 160 (286)
T COG2084 81 LLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVPGAAAGTLTIMVGGDAEAFERAKPVLEAMGKNIVH 160 (286)
T ss_pred hhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCchhhhhCceEEEeCCCHHHHHHHHHHHHHhcCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhhcccccccCCCCCCcchhHHHHH
Q 018213 231 LGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKD 310 (359)
Q Consensus 231 ~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd 310 (359)
+|+.|.++..|+++|.+...++.++.|++.++++.|++++.+.++++.+.+.||.++++.++|.+++|.|+|+++.+.||
T Consensus 161 ~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi~~~~~~s~~~e~~~~~m~~~~~~p~F~v~~~~KD 240 (286)
T COG2084 161 VGPVGAGQAAKLANNILLAGNIAALAEALALAEKAGLDPDVVLEVISGGAAGSWILENYGPRMLEGDFSPGFAVDLMLKD 240 (286)
T ss_pred ECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccccCChHHHhhcchhhcCCCCcchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHH
Q 018213 311 LRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALK 356 (359)
Q Consensus 311 ~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~ 356 (359)
++++.+.+++.|+++|+...+.++|..+.+.|+|++|++++++.|+
T Consensus 241 l~la~~~A~~~g~~lP~~~~~~~ly~~~~~~G~g~~D~sal~~~l~ 286 (286)
T COG2084 241 LGLALDAAKELGAPLPLTALAAELYAKAAAAGGGEEDFSALIKLLE 286 (286)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCccChHHHHHHhC
Confidence 9999999999999999999999999999999999999999999874
No 2
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=100.00 E-value=9.3e-48 Score=332.67 Aligned_cols=290 Identities=43% Similarity=0.703 Sum_probs=282.1
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhccc
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK 148 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~ 148 (359)
.+.++||+||+|+||..++..|.+.||.|++|||+.++.+.+.+.|.....++.|+.+.||+||.++|.+.+.+++++++
T Consensus 33 ~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~ 112 (327)
T KOG0409|consen 33 PSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGK 112 (327)
T ss_pred cccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccccccCCCCCEE-EeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCC
Q 018213 149 HGAASGMGPGKGY-VDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKS 227 (359)
Q Consensus 149 ~~~~~~l~~~~~v-i~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~lg~~ 227 (359)
..++..++++... ||.|+..|....++.+++..++.+|+++|++|+...++.+.++++++||++.+++..++|+.+|++
T Consensus 113 ~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~vDAPVSGg~~~A~~G~LtimagGde~~~~~~~~~~~~mGk~ 192 (327)
T KOG0409|consen 113 SGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRFVDAPVSGGVKGAEEGTLTIMAGGDEALFEAASPVFKLMGKN 192 (327)
T ss_pred CcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeEEeccccCCchhhhcCeEEEEecCcHHHHHHHHHHHHHhcce
Confidence 8899989998877 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhhcccccccCCCCCCcchhHH
Q 018213 228 RFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQ 307 (359)
Q Consensus 228 ~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 307 (359)
++++|..|.+...|+++|.+.+..+..++|++.++.+.|++...+.++++.+.+.|+++.++.|.|.+++|.|+|.++++
T Consensus 193 ~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~GLd~~~l~eiln~G~~~S~~~~~~~p~m~k~dy~p~f~~~~m 272 (327)
T KOG0409|consen 193 VVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLGLDAKKLLEILNTGRCWSSMFYNPVPGMLKGDYNPGFALKLM 272 (327)
T ss_pred EEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCcccHHHhCcCchhhcCCCCCcchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHhC
Q 018213 308 QKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAK 358 (359)
Q Consensus 308 ~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~~~ 358 (359)
.||++.+.+.++..+.|+|+...+.|+|+...+.|+|+.|++++++.++.+
T Consensus 273 ~KDLgla~~~a~~~~~~~P~~slA~qly~~~~a~G~g~~Dfs~V~~~~~~~ 323 (327)
T KOG0409|consen 273 VKDLGLALNAAESVKVPMPLGSLAHQLYKSMKALGYGDKDFSAVYRAFRRL 323 (327)
T ss_pred HHHHHHHHHhhhccCCCCchHHHHHHHHHHHHhcCCCccccHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999888764
No 3
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=100.00 E-value=4.9e-45 Score=331.39 Aligned_cols=286 Identities=32% Similarity=0.539 Sum_probs=268.6
Q ss_pred CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccc
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGA 151 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~ 151 (359)
|+|||||+|+||..+++.|.+.|++|.+||++++ .+.+.+.|+..+.+..++++++|+|++|+|.+++++.++++...+
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~ 79 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGC 79 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcch
Confidence 4799999999999999999999999999999874 466667788888899999999999999999988999998654456
Q ss_pred cccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCCeEEe
Q 018213 152 ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL 231 (359)
Q Consensus 152 ~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~lg~~~~~~ 231 (359)
.+.+++|+++||+|+..|...+++.+.+.++|+.|+++|++|++.....+.+.++++|+++.+++++++|+.+|.+++++
T Consensus 80 ~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaPVsGg~~~a~~g~l~~~~gG~~~~~~~~~p~l~~~g~~~~~~ 159 (292)
T PRK15059 80 TKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLFELLGKNITLV 159 (292)
T ss_pred hccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEecCCCCHHHHhcCcEEEEEcCCHHHHHHHHHHHHHHcCCcEEe
Confidence 77788999999999999999999999999999999999999999988889999999999999999999999999999999
Q ss_pred CccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhhcccccccCCCCCCcchhHHHHHH
Q 018213 232 GDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDL 311 (359)
Q Consensus 232 g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~ 311 (359)
|+.|.+...|+++|.+....+.++.|++.++++.|++++.+.+++..+.+.|++++.+.+++..++|.++|+++.+.||+
T Consensus 160 G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~l~~~~KDl 239 (292)
T PRK15059 160 GGNGDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQALMGGFASSRILEVHGERMIKRTFNPGFKIALHQKDL 239 (292)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCcccCHHHHhhchhhhcCCCCCCCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999998888999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHhC
Q 018213 312 RLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKAK 358 (359)
Q Consensus 312 ~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~~~ 358 (359)
+++.+++++.|+++|+.+++.++|+.+.+.|+|++|++++++.+++.
T Consensus 240 ~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~D~sa~~~~~~~~ 286 (292)
T PRK15059 240 NLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSALVQALELM 286 (292)
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCcCChHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999998763
No 4
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=100.00 E-value=3.3e-44 Score=327.50 Aligned_cols=286 Identities=29% Similarity=0.477 Sum_probs=267.5
Q ss_pred CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccc
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGA 151 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~ 151 (359)
++|+|||+|.||..+|+.|.+.|++|++|||++++.+.+.+.|+..+.++.++++++|+|++|+|.+..++.++++...+
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i 81 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGV 81 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccH
Confidence 47999999999999999999999999999999998888888888888899999999999999999888899988544556
Q ss_pred cccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCCeEEe
Q 018213 152 ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL 231 (359)
Q Consensus 152 ~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~lg~~~~~~ 231 (359)
.+.++++.++||+|++.|...+++.+.+.++|+.|+++|+++++.....+.+.++++|+++.+++++++|+.+|.+++++
T Consensus 82 ~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~a~~g~l~~~~gg~~~~~~~~~p~l~~~g~~~~~~ 161 (296)
T PRK15461 82 CEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLLLLAGGTAEQVERATPILMAMGNELINA 161 (296)
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHHHHhCcEEEEECCCHHHHHHHHHHHHHHcCCeEee
Confidence 77788999999999999999999999999999999999999998888899999999999999999999999999999999
Q ss_pred CccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhhccc-ccccCCCCCCcchhHHHHH
Q 018213 232 GDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGP-SMIESLYPTAFPLKHQQKD 310 (359)
Q Consensus 232 g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~-~~~~~~~~~~~~~~~~~kd 310 (359)
|+.|.+...|+++|.+...+..+++|++.++++.|++++.+.+++..+...++.+....+ .+..++|.++|+++.+.||
T Consensus 162 g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD 241 (296)
T PRK15461 162 GGPGMGIRVKLINNYMSIALNALSAEAAVLCEALGLSFDVALKVMSGTAAGKGHFTTTWPNKVLKGDLSPAFMIDLAHKD 241 (296)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccChHHHccccchhccCCCCCCcchHHHHhh
Confidence 999999999999999999999999999999999999999999999988777777766654 7888999999999999999
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHh
Q 018213 311 LRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKA 357 (359)
Q Consensus 311 ~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~~ 357 (359)
++++.+++++.|+++|+.+.+.++|+.+.+.|+|++|++++++.+++
T Consensus 242 ~~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 288 (296)
T PRK15461 242 LGIALDVANQLHVPMPLGAASREVYSQARAAGRGRQDWSAILEQVRV 288 (296)
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCCCChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998865
No 5
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=100.00 E-value=1.4e-42 Score=317.09 Aligned_cols=285 Identities=32% Similarity=0.570 Sum_probs=267.2
Q ss_pred eEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhccccccc
Q 018213 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAA 152 (359)
Q Consensus 73 ~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~ 152 (359)
+|||||+|.||..+|+.|.+.|++|++|||++++.+.+.+.|.....+.++++++||+|++|+|.+.+++.++++...+.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~ 80 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGII 80 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHh
Confidence 49999999999999999999999999999999888888888887788999999999999999998888988875434466
Q ss_pred ccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCCeEEeC
Q 018213 153 SGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLG 232 (359)
Q Consensus 153 ~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~lg~~~~~~g 232 (359)
..+++++++||+|+..+.+.+++.+.+++++++|+++|+++++.....+.+.++++|+++.+++++++++.+|.++++++
T Consensus 81 ~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~lg~~~~~~g 160 (291)
T TIGR01505 81 EGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLDAPVSGGEIGAIEGTLSIMVGGDQAVFDRVKPLFEALGKNIVLVG 160 (291)
T ss_pred hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEecCCCCCHHHHhcCCEEEEecCCHHHHHHHHHHHHHhcCCeEEeC
Confidence 77889999999999999999999999999999999999999988777788889999999999999999999999999999
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhhcccccccCCCCCCcchhHHHHHHH
Q 018213 233 DVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLR 312 (359)
Q Consensus 233 ~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~ 312 (359)
+.+.+...|+++|.+....+.+++|++.++++.|++++++.+++..+.+.+++++.+.+.+..++|.++|+++.+.||+.
T Consensus 161 ~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~~~~~~KDl~ 240 (291)
T TIGR01505 161 GNGDGQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGLAGSTVLEVKGERVIDRTFKPGFRIDLHQKDLN 240 (291)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHHHhhChhhhcCCCCCCcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998889999998889999999999999999999999
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHh
Q 018213 313 LALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKA 357 (359)
Q Consensus 313 ~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~~ 357 (359)
++.+++++.|+++|+.+++.++++.+.+.|+|++|++++++++++
T Consensus 241 ~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~~ 285 (291)
T TIGR01505 241 LALDSAKAVGANLPNTATVQELFNTLRANGGGQLDHSALVQALEL 285 (291)
T ss_pred HHHHHHHHcCCCChhHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Confidence 999999999999999999999999999999999999999999875
No 6
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=100.00 E-value=2e-42 Score=316.90 Aligned_cols=286 Identities=32% Similarity=0.554 Sum_probs=268.4
Q ss_pred CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccc
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGA 151 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~ 151 (359)
|+|||||+|.||..+|+.|.+.|++|.+|||++++.+.+.+.|+..+.+++++++++|+|++|+|.+.+++.++++.+++
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~ 82 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGI 82 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchH
Confidence 68999999999999999999999999999999988887877788888899999999999999999988899887544456
Q ss_pred cccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCCeEEe
Q 018213 152 ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYL 231 (359)
Q Consensus 152 ~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~lg~~~~~~ 231 (359)
.+.++++++++|+|+..|...+++.+.+.+++++|+++|++++++....+.+.++++|+++.++++.++++.+|.+++++
T Consensus 83 ~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~~l~~~~~~~~~~ 162 (296)
T PRK11559 83 IEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHT 162 (296)
T ss_pred hhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhcCCeEEe
Confidence 77889999999999999999999999999999999999999998888888888999999999999999999999999999
Q ss_pred CccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhhcccccccCCCCCCcchhHHHHHH
Q 018213 232 GDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDL 311 (359)
Q Consensus 232 g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~ 311 (359)
|+.+.++..|+++|.+....+++++|++.++++.|++++++.+.+..+.+.+++++.+.+.+.+++|.++|+++...||+
T Consensus 163 g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~l~~~~~~s~~~~~~~~~~~~~d~~~~f~~~~~~KDl 242 (296)
T PRK11559 163 GDIGAGNVTKLANQVIVALNIAAMSEALVLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDL 242 (296)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHHHhhchHhhcCCCCCCcchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888999999888889889999999999999999
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHh
Q 018213 312 RLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKA 357 (359)
Q Consensus 312 ~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~~ 357 (359)
+++.+++++.|+++|+.+++.++++.+.+.|+|++|++++++++++
T Consensus 243 ~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~ 288 (296)
T PRK11559 243 ANALDTSHGVGAPLPLTAAVMEMMQALKADGLGTADHSALACYYEK 288 (296)
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCcCCcHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999865
No 7
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=100.00 E-value=4.1e-42 Score=313.01 Aligned_cols=280 Identities=34% Similarity=0.514 Sum_probs=261.5
Q ss_pred EEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccC
Q 018213 76 FLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGM 155 (359)
Q Consensus 76 iiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l 155 (359)
|||+|.||..+|+.|.+.|++|++|||++++.+.+.+.|+....++.++++++|+|++|+|.+.+++.++++.+.+.+.+
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~ 80 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKV 80 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcC
Confidence 68999999999999999999999999999988888888888888999999999999999998788898886556677788
Q ss_pred CCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCCeEEeCccC
Q 018213 156 GPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVG 235 (359)
Q Consensus 156 ~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~lg~~~~~~g~~~ 235 (359)
++++++||+|+..|...+.+.+.+.++|+.|+++|++|++.....+.+.++++|+++.+++++++|+.+|.+++++|+.+
T Consensus 81 ~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vdaPv~Gg~~~a~~g~l~~~~gg~~~~~~~~~~~l~~~g~~~~~~g~~g 160 (288)
T TIGR01692 81 AKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDAPVSGGVGGARAGTLTFMVGGVAEEFAAAEPVLGPMGRNIVHCGDHG 160 (288)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEECCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhcCCeEeeCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhhccc-------ccccCCCCCCcchhHHH
Q 018213 236 NGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGP-------SMIESLYPTAFPLKHQQ 308 (359)
Q Consensus 236 ~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~-------~~~~~~~~~~~~~~~~~ 308 (359)
.+...|+++|.+....+.+++|++.++++.|++++.+.+++..+.+.++.+..+.+ .+..++|.++|++..+.
T Consensus 161 ~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 240 (288)
T TIGR01692 161 AGQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIANTSSGRCWSSDTYNPVPGVMPQAPASNGYQGGFGTALML 240 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCcHHHHhCCCccccccccccCCCCCCcchHHHH
Confidence 99999999999999999999999999999999999999999998888887775544 23568999999999999
Q ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHH
Q 018213 309 KDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEAL 355 (359)
Q Consensus 309 kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~~~~d~~~~~~~~ 355 (359)
||++++.+++++.|+|+|+.+.+.++|+.+.+.|+|++|++++++.+
T Consensus 241 KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~ 287 (288)
T TIGR01692 241 KDLGLAQDAAKSAGAPTPLGALARQLYSLFDDKGHGGKDFSSVIQLL 287 (288)
T ss_pred hhHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCCCChHHHHHHh
Confidence 99999999999999999999999999999999999999999999876
No 8
>PLN02858 fructose-bisphosphate aldolase
Probab=100.00 E-value=1.6e-40 Score=351.17 Aligned_cols=287 Identities=21% Similarity=0.359 Sum_probs=275.8
Q ss_pred CCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhccccc
Q 018213 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG 150 (359)
Q Consensus 71 ~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~ 150 (359)
..+|||||+|.||..||++|.+.|++|.+|||++++.+.+.+.|+..++++.|++++||+||+|+|.+.+++.++++...
T Consensus 4 ~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~g 83 (1378)
T PLN02858 4 AGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDEG 83 (1378)
T ss_pred CCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchhh
Confidence 36799999999999999999999999999999999999999889999999999999999999999999999999977677
Q ss_pred ccccCCCCCEEEeccCCChHHHHHHHHHHHhcC--CeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCCe
Q 018213 151 AASGMGPGKGYVDVSTVDGDTSKLINGHIKATG--ASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSR 228 (359)
Q Consensus 151 ~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~lg~~~ 228 (359)
+++.+++|.++||+|+..|....++.+.+.++| +.|+++|++|++..+..+.+.++++|+++.+++++++|+.+|.++
T Consensus 84 ~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~~p~l~~~g~~i 163 (1378)
T PLN02858 84 AAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDAYVSKGMSDLLNGKLMIIASGRSDAITRAQPFLSAMCQKL 163 (1378)
T ss_pred HHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEccCcCCHHHHhcCCeEEEEcCCHHHHHHHHHHHHHhcCce
Confidence 888899999999999999999999999999998 999999999999999999999999999999999999999999998
Q ss_pred EEe-CccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhhcccccccCCCCCCcchhHH
Q 018213 229 FYL-GDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQ 307 (359)
Q Consensus 229 ~~~-g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 307 (359)
+++ |+.|.+...|+++|++....+.+++|++.++++.|++++.+++++..+++.||++..+.+.+..++|.++|+++.+
T Consensus 164 ~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~vl~~s~g~s~~~~~~~~~~~~~d~~~~F~l~l~ 243 (1378)
T PLN02858 164 YTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYDIISNAAGSSWIFKNHVPLLLKDDYIEGRFLNVL 243 (1378)
T ss_pred EEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCHHHHhhhhHhhcCCCCCCchhHHH
Confidence 864 8999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHh
Q 018213 308 QKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKA 357 (359)
Q Consensus 308 ~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~~ 357 (359)
.||++++.+++++.|+++|+.+.+.++|..+.+.|+|++|++++++.+++
T Consensus 244 ~KDl~la~~~A~~~g~~lpl~~~a~~~~~~a~~~G~g~~D~sav~~~~~~ 293 (1378)
T PLN02858 244 VQNLGIVLDMAKSLPFPLPLLAVAHQQLISGSSSMQGDDTATSLAKVWEK 293 (1378)
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999875
No 9
>PLN02858 fructose-bisphosphate aldolase
Probab=100.00 E-value=3.6e-39 Score=340.93 Aligned_cols=288 Identities=26% Similarity=0.394 Sum_probs=273.2
Q ss_pred CCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccc
Q 018213 70 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (359)
Q Consensus 70 ~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~ 149 (359)
..++|||||+|+||..+|++|...|++|.+|||++++.+.+.+.|.....++.+++++||+|++|+|.+.+++.+++++.
T Consensus 323 ~~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~ 402 (1378)
T PLN02858 323 PVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDL 402 (1378)
T ss_pred CCCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchh
Confidence 34789999999999999999999999999999999888888888887788999999999999999999999999987666
Q ss_pred cccccCCCCCEEEeccCCChHHHHHHHHHHHh--cCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCC
Q 018213 150 GAASGMGPGKGYVDVSTVDGDTSKLINGHIKA--TGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKS 227 (359)
Q Consensus 150 ~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~lg~~ 227 (359)
.+++.+++|.++||+|+..|...+++.+.+.+ +|+.|+++|++|++..+..+.+.++++|+++.+++++++|+.+|.+
T Consensus 403 g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lDAPVsGg~~~A~~G~L~imvgG~~~~~~~~~plL~~lg~~ 482 (1378)
T PLN02858 403 GAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVDAPVSGGVKRAAMGTLTIMASGTDEALKSAGSVLSALSEK 482 (1378)
T ss_pred hHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEccCCCChhhhhcCCceEEEECCHHHHHHHHHHHHHHhCc
Confidence 67788899999999999999999999999998 8999999999999999999999999999999999999999999998
Q ss_pred eEEe-CccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhhcccccccCCCCCCcchhH
Q 018213 228 RFYL-GDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKH 306 (359)
Q Consensus 228 ~~~~-g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 306 (359)
++++ ++.|.+..+|+++|.+....+++++|++.++++.|++++.+.+++..+.+.||++..+.+.|..++|.++|+++.
T Consensus 483 i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~Gld~~~l~evl~~s~g~s~~~~~~~~~~l~~d~~~~f~l~l 562 (1378)
T PLN02858 483 LYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFDIISNAGGTSWMFENRVPHMLDNDYTPYSALDI 562 (1378)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcccChhhhhccchhhcCCCCCCchhHH
Confidence 8874 679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHh
Q 018213 307 QQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKA 357 (359)
Q Consensus 307 ~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~~ 357 (359)
+.||++++.+++++.|+|+|+.+.+.++|..+.+.|+|++|++++++.+++
T Consensus 563 ~~KDl~l~~~~a~~~g~~~pl~~~~~~~~~~a~~~G~g~~D~sav~~~~~~ 613 (1378)
T PLN02858 563 FVKDLGIVSREGSSRKIPLHLSTVAHQLFLAGSASGWGRIDDAAVVKVYET 613 (1378)
T ss_pred HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999875
No 10
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=100.00 E-value=2.9e-38 Score=288.90 Aligned_cols=279 Identities=21% Similarity=0.300 Sum_probs=254.5
Q ss_pred CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhc---CCEEEEeeCChhHHHHHhccc
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAAS---CDVTFAMLADPESAMDVACGK 148 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~---aDivi~~~p~~~~~~~~~~~~ 148 (359)
|+|||||+|+||..+|++|.+.|++|++|||++++.+.+.+.|...+.++++++++ +|+|++|+|.+.+++.++
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~--- 77 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVI--- 77 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHH---
Confidence 47999999999999999999999999999999988888887888888899999876 699999999877999998
Q ss_pred ccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCC--
Q 018213 149 HGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGK-- 226 (359)
Q Consensus 149 ~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~lg~-- 226 (359)
.++.+.+++|.++||+|++.|.+..++.+.+.++++.|+++|++|++.....+. .++++|+++.+++++++|+.+|.
T Consensus 78 ~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G~~~~a~~g~-~~~~gG~~~~~~~~~~~l~~~~~~~ 156 (299)
T PRK12490 78 KDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSGGVWGLRNGY-CLMVGGDKEIYDRLEPVFKALAPEG 156 (299)
T ss_pred HHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCCCHHHHhcCC-eEEecCCHHHHHHHHHHHHHhcCcC
Confidence 677888899999999999999999999999999999999999999998888887 68899999999999999999997
Q ss_pred -CeEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHhhc-cccchhhhhcccccccCCCCCCc
Q 018213 227 -SRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVG--LDPNVLVEVVSQG-AISAPMYSLKGPSMIESLYPTAF 302 (359)
Q Consensus 227 -~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~G--i~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~ 302 (359)
+++++|+.|.+...|+++|.+....+.+++|++.++++.| ++++.+.++++.+ .+.|++++...+.+.++++ .+
T Consensus 157 ~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~--~~ 234 (299)
T PRK12490 157 PGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARLWRNGSVIRSWLLDLTVKALAEDPK--LA 234 (299)
T ss_pred CcEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHcCCcHHHHHHHHHHHHHHhhCCC--hh
Confidence 7899999999999999999999999999999999999999 9999999999964 4888999888887765443 25
Q ss_pred chhHHHHHH---HHHHHHHHhcCCCchHHHHHH-HHHHHHHHCCCCCccHHHHHHHHH
Q 018213 303 PLKHQQKDL---RLALGLAESVSQSTPIAAAAN-ELYKVAKSHGLSDEDFSAVIEALK 356 (359)
Q Consensus 303 ~~~~~~kd~---~~~~~~a~~~g~~~p~~~~~~-~~~~~a~~~g~~~~d~~~~~~~~~ 356 (359)
.++.+.||. +++++.+++.|+|+|++.++. .++....+.|.|..|.+++.+++-
T Consensus 235 ~l~~~~KD~~~~~l~~~~A~~~g~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~f~ 292 (299)
T PRK12490 235 GIKGYVNDSGEGRWTVEEAIELAVAAPVIAASLFMRFASQEDDSFHMKVVSALRNQFG 292 (299)
T ss_pred hhhHHHHhcCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCccCChHHHHHHHHHHhhC
Confidence 688999998 899999999999999999995 888888899989999999988763
No 11
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=100.00 E-value=3.4e-37 Score=294.44 Aligned_cols=268 Identities=21% Similarity=0.279 Sum_probs=242.4
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC----CCc---cCCCHHHHhhc---CCEEEEeeCCh
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL----GAK---YQPSPDEVAAS---CDVTFAMLADP 138 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~----g~~---~~~~~~~~~~~---aDivi~~~p~~ 138 (359)
...++|||||+|.||..+|++|.+.|++|.+|||++++.+.+.+. |.. .+.+++|+++. +|+|++++|.+
T Consensus 4 ~~~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~ 83 (493)
T PLN02350 4 AALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAG 83 (493)
T ss_pred CCCCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCc
Confidence 344679999999999999999999999999999999988887653 543 57789999876 99999999999
Q ss_pred hHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHH
Q 018213 139 ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVA 218 (359)
Q Consensus 139 ~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~ 218 (359)
+.++.++ ..+++.+++|.++||+|+..+.+...+.+.++++|++|+++|++|++..+..++ .+++||+++++++++
T Consensus 84 ~aV~~Vi---~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA~~G~-~im~GG~~~a~~~v~ 159 (493)
T PLN02350 84 APVDQTI---KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGARNGP-SLMPGGSFEAYKNIE 159 (493)
T ss_pred HHHHHHH---HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHhcCCC-eEEecCCHHHHHHHH
Confidence 9999999 778889999999999999999999999999999999999999999999999998 789999999999999
Q ss_pred HHHHHhCC------CeEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHH---Hhhccccchhhhh
Q 018213 219 PLLDIMGK------SRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEK-VGLDPNVLVEV---VSQGAISAPMYSL 288 (359)
Q Consensus 219 ~ll~~lg~------~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~-~Gi~~~~~~~~---~~~~~~~s~~~~~ 288 (359)
++|+.++. +++++|+.|.++.+|+++|.+.+..+.+++|++.++++ .|++++++.++ +..+.+.|++++.
T Consensus 160 pvL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld~~~l~~vf~~~~~g~~~S~llei 239 (493)
T PLN02350 160 DILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSNEELAEVFAEWNKGELESFLIEI 239 (493)
T ss_pred HHHHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHcCCCccchHHHH
Confidence 99999995 48999999999999999999999999999999999999 59999999998 4577888999998
Q ss_pred cccccccCC-CCCCcchhHHHHHHH------HHHHHHHhcCCCchH-HHHHHHHHHHHHH
Q 018213 289 KGPSMIESL-YPTAFPLKHQQKDLR------LALGLAESVSQSTPI-AAAANELYKVAKS 340 (359)
Q Consensus 289 ~~~~~~~~~-~~~~~~~~~~~kd~~------~~~~~a~~~g~~~p~-~~~~~~~~~~a~~ 340 (359)
+.+.+..++ +.++|.++.+.||++ +..+.+.+.|+|+|+ ..++.+.+.....
T Consensus 240 ~~~~l~~~d~~~~~f~l~~i~Kd~~~kGTg~w~~~~A~~lgv~~p~i~~av~~r~~s~~k 299 (493)
T PLN02350 240 TADIFSVKDDKGDGYLVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDARYLSGLK 299 (493)
T ss_pred HHHHHhhcCCCCCCchHHHHHhhhcccchHHHHHHHHHHhCCCccHHHHHHHHHHHhccH
Confidence 888777664 777899999999999 999999999999999 7777766665543
No 12
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=100.00 E-value=9.9e-36 Score=272.63 Aligned_cols=278 Identities=23% Similarity=0.331 Sum_probs=247.2
Q ss_pred CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhc---CCEEEEeeCChhHHHHHhccc
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAAS---CDVTFAMLADPESAMDVACGK 148 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~---aDivi~~~p~~~~~~~~~~~~ 148 (359)
|+|||||+|.||..+|+.|.+.|++|.+|||++++.+.+.+.|+..+++++++++. +|+|++++|....++.++
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~--- 77 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATI--- 77 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHH---
Confidence 57999999999999999999999999999999998888888888888899998876 699999999877889888
Q ss_pred ccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCC--
Q 018213 149 HGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGK-- 226 (359)
Q Consensus 149 ~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~lg~-- 226 (359)
..+.+.++++.++||+|++.+....++.+.++++|+.|+++|++|++.....+. .++++|+++.+++++++|+.++.
T Consensus 78 ~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~dapvsG~~~~a~~g~-~~~~gG~~~~~~~~~~~l~~~~~~~ 156 (301)
T PRK09599 78 DELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTSGGVWGLERGY-CLMIGGDKEAVERLEPIFKALAPRA 156 (301)
T ss_pred HHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCCcCHHHHhcCC-eEEecCCHHHHHHHHHHHHHHcccc
Confidence 677788899999999999999999999999999999999999999998888785 78899999999999999999998
Q ss_pred --CeEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCHHHHHHHHhhcc-ccchhhhhcccccccCCCCCC
Q 018213 227 --SRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEK--VGLDPNVLVEVVSQGA-ISAPMYSLKGPSMIESLYPTA 301 (359)
Q Consensus 227 --~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~--~Gi~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~ 301 (359)
+++++|+.|++..+|+++|.+.+..+.++.|++.++++ .|++++.+.++++.++ ..|++++...+.+..+ +.
T Consensus 157 ~~~~~~~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~---~~ 233 (301)
T PRK09599 157 EDGYLHAGPVGAGHFVKMVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAEVWRRGSVIRSWLLDLTADALAED---PK 233 (301)
T ss_pred cCCeEeECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCCcHHHHHHHHHHHHHHhcC---CC
Confidence 89999999999999999999999999999999999999 9999999999999875 6888888877776443 22
Q ss_pred cc-hhHHHHH---HHHHHHHHHhcCCCchHHHHH-HHHHHHHHHCCCCCccHHHHHHHHH
Q 018213 302 FP-LKHQQKD---LRLALGLAESVSQSTPIAAAA-NELYKVAKSHGLSDEDFSAVIEALK 356 (359)
Q Consensus 302 ~~-~~~~~kd---~~~~~~~a~~~g~~~p~~~~~-~~~~~~a~~~g~~~~d~~~~~~~~~ 356 (359)
+. +....|| .+++++.+.+.|+|+|.+.+. ...+....+.|.++.|.+++.+++-
T Consensus 234 ~~~~~~~~kd~~~~~~~~~~A~~~~~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~fg 293 (301)
T PRK09599 234 LDEISGYVEDSGEGRWTVEEAIDLAVPAPVIAAALFMRFRSRQEDSFADKVVAALRNGFG 293 (301)
T ss_pred HHHHHHHHHhhCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHhcC
Confidence 22 3344555 588999999999999999994 4568888888999999999988763
No 13
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=100.00 E-value=2.9e-32 Score=249.15 Aligned_cols=278 Identities=22% Similarity=0.273 Sum_probs=236.8
Q ss_pred CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHh---hcCCEEEEeeCChhHHHHHhccc
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVA---ASCDVTFAMLADPESAMDVACGK 148 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~---~~aDivi~~~p~~~~~~~~~~~~ 148 (359)
|+|||||+|.||..+|+.|.+.|++|.+|||++++.+.+.+.+.....+++++. ..+|+|++++|.. .++.++
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~--- 76 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVL--- 76 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHH---
Confidence 579999999999999999999999999999999988888887777677777765 4589999999966 999998
Q ss_pred ccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCC--
Q 018213 149 HGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGK-- 226 (359)
Q Consensus 149 ~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~lg~-- 226 (359)
+++.+.+++|.++||++++.+.+...+.+.+.+.|++|+++|++|++.....+ ..++++|+++.++.++++|+.++.
T Consensus 77 ~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G-~~~~~gG~~~~~~~~~~~l~~~~~~~ 155 (298)
T TIGR00872 77 EELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERG-YCFMIGGDGEAFARAEPLFADVAPEE 155 (298)
T ss_pred HHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcC-CeeeeCCCHHHHHHHHHHHHHhcCcC
Confidence 78888899999999999999999999999999999999999999999888888 578899999999999999999986
Q ss_pred -CeEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHhhcc-ccchhhhhcccccccCCCCCCc
Q 018213 227 -SRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKV--GLDPNVLVEVVSQGA-ISAPMYSLKGPSMIESLYPTAF 302 (359)
Q Consensus 227 -~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~--Gi~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~ 302 (359)
.++++|+.|.+...|++.|.+....+.+++|++.++++. |++++++.++++.++ +.|++++...+.+.+++..+.+
T Consensus 156 ~~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~~~g~~~~s~~l~~~~~~~~~~~~~~~~ 235 (298)
T TIGR00872 156 QGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVWRRGSVIRSWLLDLTAIAFRESPDLAEF 235 (298)
T ss_pred CCEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHcCCchhHhHHHHHHHHHHhcCCcHHHH
Confidence 588999999999999999999999999999999999998 579999999999886 5899999887777766654544
Q ss_pred chh-HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHh
Q 018213 303 PLK-HQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEALKA 357 (359)
Q Consensus 303 ~~~-~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~~ 357 (359)
... ...+|.++++..+.+.|+|+|.+.+. ++.+..... .+.-...++...|+
T Consensus 236 ~~~~~~~~~~r~~v~~a~~~g~p~P~~~~a--l~~~~~~~~-~~~~~~~~~~~~r~ 288 (298)
T TIGR00872 236 SGRVSDSGEGRWTVIAAIDLGVPAPVIATS--LQSRFASRD-LDDFANKVLAALRK 288 (298)
T ss_pred HHHHHhhccHHHHHHHHHHhCCCHHHHHHH--HHHHHHhCC-CCCcHHHHHHHHHH
Confidence 433 35677789999999999999999884 444444432 22334555555554
No 14
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=100.00 E-value=2.1e-31 Score=254.64 Aligned_cols=256 Identities=20% Similarity=0.248 Sum_probs=221.4
Q ss_pred CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC----C--CccCCCHHHHhh---cCCEEEEeeCChhHHH
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL----G--AKYQPSPDEVAA---SCDVTFAMLADPESAM 142 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~----g--~~~~~~~~~~~~---~aDivi~~~p~~~~~~ 142 (359)
++|||||+|.||.++|++|.+.|++|.+|||++++.+.+.+. | +..+.+++|++. ++|+|++++|.+..++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~ 81 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVD 81 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHH
Confidence 579999999999999999999999999999999988877653 4 346789999986 4899999999899999
Q ss_pred HHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHHH
Q 018213 143 DVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLD 222 (359)
Q Consensus 143 ~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~ 222 (359)
.++ +++.+.+++|.+|||++++.+.++....+.+.++|++|+++|++|++..+..++ .+++||+++++++++++|+
T Consensus 82 ~vi---~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~gA~~G~-~lm~GG~~~a~~~~~piL~ 157 (470)
T PTZ00142 82 ETI---DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEEGARYGP-SLMPGGNKEAYDHVKDILE 157 (470)
T ss_pred HHH---HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHHHHhcCC-EEEEeCCHHHHHHHHHHHH
Confidence 999 788899999999999999999999999999999999999999999999999998 6899999999999999999
Q ss_pred HhCCC------eEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHh---hccccchhhhhcccc
Q 018213 223 IMGKS------RFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSE-KVGLDPNVLVEVVS---QGAISAPMYSLKGPS 292 (359)
Q Consensus 223 ~lg~~------~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~-~~Gi~~~~~~~~~~---~~~~~s~~~~~~~~~ 292 (359)
.++.+ +.++|+.|.++.+|+++|.+.+.++++++|++.+++ +.|++++++.+++. .+...|++++.....
T Consensus 158 ~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~gl~~~~l~~v~~~w~~g~~~S~l~ei~~~~ 237 (470)
T PTZ00142 158 KCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEELSEVFNKWNEGILNSYLIEITAKI 237 (470)
T ss_pred HHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 99987 789999999999999999999999999999999998 79999999998884 677889988877665
Q ss_pred cccCCCCC-CcchhHH-----HH-HHHHHHHHHHhcCCCchHHHHH
Q 018213 293 MIESLYPT-AFPLKHQ-----QK-DLRLALGLAESVSQSTPIAAAA 331 (359)
Q Consensus 293 ~~~~~~~~-~~~~~~~-----~k-d~~~~~~~a~~~g~~~p~~~~~ 331 (359)
+...+-.. +.-++.. .| .-.+.+..+-++|+|.|++...
T Consensus 238 ~~~~d~~~~~~~l~~i~d~~~~~gtg~wt~~~a~~~~v~~p~i~~a 283 (470)
T PTZ00142 238 LAKKDDLGEEHLVDKILDIAGSKGTGKWTVQEALERGIPVPTMAAS 283 (470)
T ss_pred hhcccccCCCcchhhhcCcccCCchHHhHHHHHHHcCCCchHHHHH
Confidence 55443221 1222221 11 1257788899999999988776
No 15
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.98 E-value=1.4e-30 Score=249.06 Aligned_cols=254 Identities=19% Similarity=0.241 Sum_probs=218.9
Q ss_pred EEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC-----CCccCCCHHHHhh---cCCEEEEeeCChhHHHHHh
Q 018213 74 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-----GAKYQPSPDEVAA---SCDVTFAMLADPESAMDVA 145 (359)
Q Consensus 74 igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-----g~~~~~~~~~~~~---~aDivi~~~p~~~~~~~~~ 145 (359)
|||||+|.||.++|++|.+.|++|.+|||++++.+.+.+. ++..+.++++++. .+|+|++++|.+..++.++
T Consensus 2 IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~Vi 81 (467)
T TIGR00873 2 IGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAVI 81 (467)
T ss_pred EEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHHH
Confidence 8999999999999999999999999999999988887765 2456678888774 5899999999888999999
Q ss_pred cccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHHHHhC
Q 018213 146 CGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMG 225 (359)
Q Consensus 146 ~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~lg 225 (359)
+++.+.+++|.+|||++++.+.++....+.+.++|++|+++|++|++..+..++ .++++|+++++++++++|+.++
T Consensus 82 ---~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~gA~~G~-~im~GG~~~a~~~~~p~L~~ia 157 (467)
T TIGR00873 82 ---NQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEEGARKGP-SIMPGGSAEAWPLVAPIFQKIA 157 (467)
T ss_pred ---HHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHHHHhcCC-cCCCCCCHHHHHHHHHHHHHHh
Confidence 788888999999999999999999899999999999999999999999999898 6789999999999999999998
Q ss_pred CC------eEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH---hhccccchhhhhccccccc
Q 018213 226 KS------RFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSE-KVGLDPNVLVEVV---SQGAISAPMYSLKGPSMIE 295 (359)
Q Consensus 226 ~~------~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~-~~Gi~~~~~~~~~---~~~~~~s~~~~~~~~~~~~ 295 (359)
.+ +.++|+.|+++.+|+++|.+.+.++++++|++.+++ +.|++++++.+++ +.+.+.|++++...+.+.+
T Consensus 158 ~~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g~~~~~l~~v~~~w~~~~~~S~l~~~~~~~~~~ 237 (467)
T TIGR00873 158 AKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIAEVFTEWNNGELDSYLIEITADILKK 237 (467)
T ss_pred hhcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCcccchHHHhHHHHHhc
Confidence 86 479999999999999999999999999999999985 7999999999999 5677889999988777766
Q ss_pred CCCCCCcchhHH------HHHHHHHHHHHHhcCCCchHHHHH
Q 018213 296 SLYPTAFPLKHQ------QKDLRLALGLAESVSQSTPIAAAA 331 (359)
Q Consensus 296 ~~~~~~~~~~~~------~kd~~~~~~~a~~~g~~~p~~~~~ 331 (359)
++-....-++.. -..-.+.+..+-++|+|.|++...
T Consensus 238 ~d~~~~~~l~~i~~~~~~~gtg~wt~~~a~~~~v~~p~i~~a 279 (467)
T TIGR00873 238 KDEDGKPLVDKILDTAGQKGTGKWTAISALDLGVPVTLITES 279 (467)
T ss_pred cCCCCCccHHhhcCcccCccHHHHHHHHHHHcCCCchHHHHH
Confidence 443211112221 111257788899999999988765
No 16
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=99.97 E-value=3e-29 Score=238.89 Aligned_cols=246 Identities=21% Similarity=0.250 Sum_probs=218.4
Q ss_pred hhHHHHHHHHHCCCcEEEEcCCccchhHHHhC-----CCccCCCHHHHhhc---CCEEEEeeCChhHHHHHhcccccccc
Q 018213 82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-----GAKYQPSPDEVAAS---CDVTFAMLADPESAMDVACGKHGAAS 153 (359)
Q Consensus 82 iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-----g~~~~~~~~~~~~~---aDivi~~~p~~~~~~~~~~~~~~~~~ 153 (359)
||..+|++|.+.|++|.+|||++++.+.+.+. |+..+.+++++++. +|+|++++|.+..++.++ .++++
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi---~~l~~ 77 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVI---EQLLP 77 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHH---HHHHh
Confidence 89999999999999999999999999888773 47788899999875 899999999999999999 78889
Q ss_pred cCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCCe-----
Q 018213 154 GMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSR----- 228 (359)
Q Consensus 154 ~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~lg~~~----- 228 (359)
.+.+|.++||+++..+.++.+..+.++++|++|+++|++|++..+..|+ .+++||+++++++++++|+.++.++
T Consensus 78 ~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~gA~~G~-siM~GG~~~a~~~~~piL~~ia~~~~~g~~ 156 (459)
T PRK09287 78 LLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEEGALHGP-SIMPGGQKEAYELVAPILEKIAAKVEDGEP 156 (459)
T ss_pred cCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHHHHhcCC-EEEEeCCHHHHHHHHHHHHHHhhhhcCCCC
Confidence 9999999999999999999999999999999999999999999999998 7889999999999999999999876
Q ss_pred --EEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH---hhccccchhhhhcccccccCCCCCCc
Q 018213 229 --FYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSE-KVGLDPNVLVEVV---SQGAISAPMYSLKGPSMIESLYPTAF 302 (359)
Q Consensus 229 --~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~-~~Gi~~~~~~~~~---~~~~~~s~~~~~~~~~~~~~~~~~~~ 302 (359)
.++|+.|.++.+|+++|.+.+..+++++|++.+++ +.|++++++.+++ +.+.+.|++++.+.+.+.++++..+.
T Consensus 157 c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~~~wn~g~~~S~l~ei~~~~l~~~d~~~~~ 236 (459)
T PRK09287 157 CVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVFAEWNKGELNSYLIEITADILRQKDEETGK 236 (459)
T ss_pred ceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCccChHHHhHhHHHhcCCCCCCC
Confidence 89999999999999999999999999999999999 5899999999998 46778899999988888887874332
Q ss_pred -chhHH-----HHH-HHHHHHHHHhcCCCchHHHHH
Q 018213 303 -PLKHQ-----QKD-LRLALGLAESVSQSTPIAAAA 331 (359)
Q Consensus 303 -~~~~~-----~kd-~~~~~~~a~~~g~~~p~~~~~ 331 (359)
-++.. .|. -.+.+..+-++|+|.|++...
T Consensus 237 ~~~d~i~d~~~~~gtg~Wt~~~a~~~~v~~~~i~~A 272 (459)
T PRK09287 237 PLVDVILDKAGQKGTGKWTSQSALDLGVPLTLITEA 272 (459)
T ss_pred cchHHhcCcccCCcHHHHHHHHHHHhCCChHHHHHH
Confidence 22222 111 257788888999999987664
No 17
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=99.96 E-value=3.4e-28 Score=232.14 Aligned_cols=255 Identities=18% Similarity=0.169 Sum_probs=206.4
Q ss_pred CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHh-------------------CC-CccCCCHHHHhhcCCEE
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-------------------LG-AKYQPSPDEVAASCDVT 131 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~-------------------~g-~~~~~~~~~~~~~aDiv 131 (359)
|+|+|||+|.||..+|..|+..|++|++||+++++.+.+.+ .| +....+..++++++|+|
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advv 80 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVI 80 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEE
Confidence 57999999999999999999999999999999887766543 12 45566788888999999
Q ss_pred EEeeCChh---------HHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhc--CCe-eecCCCCCCCcccc
Q 018213 132 FAMLADPE---------SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT--GAS-FLEAPVSGSKKPAE 199 (359)
Q Consensus 132 i~~~p~~~---------~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~--~~~-~~~~~~~~~~~~~~ 199 (359)
|+|+|.+. .+..++ +.+.+.+++++++|++|+..|...+.+...+.+. |.. +.+.++.+.+....
T Consensus 81 ii~vpt~~~~~~~~d~~~v~~~~---~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~Pe~~~ 157 (411)
T TIGR03026 81 IICVPTPLKEDGSPDLSYVESAA---ETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYLAYNPEFLR 157 (411)
T ss_pred EEEeCCCCCCCCCcChHHHHHHH---HHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceEEECCCcCC
Confidence 99999764 356665 6677778999999999999999888887554333 322 33444444443333
Q ss_pred CCce--------EEEecCCHHHHHHHHHHHHHhC-CCeEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Q 018213 200 DGQL--------IFLAAGDKSLYNTVAPLLDIMG-KSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPN 270 (359)
Q Consensus 200 ~~~~--------~~~~~g~~~~~~~v~~ll~~lg-~~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~ 270 (359)
.+.. .++++++++..++++++++.++ ..++++++++.++..|++.|.+.+..+++++|+..+|++.|+|++
T Consensus 158 ~G~~~~~~~~~~~iv~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~la~~~GiD~~ 237 (411)
T TIGR03026 158 EGNAVHDLLNPDRIVGGETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTFRAVKIAFANELARICEALGIDVY 237 (411)
T ss_pred CCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 3333 6778899999999999999998 578889999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccccchhhhhcccccccCCCCCCc--chhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q 018213 271 VLVEVVSQGAISAPMYSLKGPSMIESLYPTAF--PLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKS 340 (359)
Q Consensus 271 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~ 340 (359)
++.+++... +++..+.+.|++ ....+.||+.++...+++.|+++|+++++.++.+...+
T Consensus 238 ~v~~~~~~~-----------~~i~~~~~~pg~g~gg~c~~KD~~~l~~~a~~~g~~~~l~~~~~~~N~~~~~ 298 (411)
T TIGR03026 238 EVIEAAGTD-----------PRIGFNFLNPGPGVGGHCIPKDPLALIYKAKELGYNPELIEAAREINDSQPD 298 (411)
T ss_pred HHHHHhCCC-----------CCCCCCcCCCCCCCCCCchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHhHH
Confidence 999998753 345556677765 45669999999999999999999999999887766543
No 18
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=99.96 E-value=1e-29 Score=231.70 Aligned_cols=179 Identities=17% Similarity=0.179 Sum_probs=155.5
Q ss_pred CeeeeeccccccccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCC-CCccccccccccccCCcccccCCCCeEEEEcC
Q 018213 1 MTLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKP-LFPLSFKVFSSQATGVSAEADELPGRIGFLGM 79 (359)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~ 79 (359)
|++..+|+|++. +++|++++++|++.|++..+.+..|.|.|.... ...+. ..+++++|+||||+
T Consensus 90 I~Vtnvp~~~t~--sVAe~~~aLiLa~~R~~~~~~~~~r~g~w~~~~~~~~~~-------------~~~l~gktvGIiG~ 154 (324)
T COG1052 90 ITVTNVPGYSTE--AVAEHAVALILALARRIHEGDRRVREGNWSLSGGPDPLL-------------GFDLRGKTLGIIGL 154 (324)
T ss_pred cEEEeCCCCCch--HHHHHHHHHHHHHhhchHHHHHHHhcCcccccCCccccc-------------ccCCCCCEEEEECC
Confidence 467788999999 999999999999999999999999999998653 11111 11288999999999
Q ss_pred ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCC
Q 018213 80 GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGK 159 (359)
Q Consensus 80 G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~ 159 (359)
|+||+++|++++.||++|.+|+|++. .+...+.+..+.+ ++|++++||+|++++|.+++|++++ |++.++.||+|+
T Consensus 155 GrIG~avA~r~~~Fgm~v~y~~~~~~-~~~~~~~~~~y~~-l~ell~~sDii~l~~Plt~~T~hLi--n~~~l~~mk~ga 230 (324)
T COG1052 155 GRIGQAVARRLKGFGMKVLYYDRSPN-PEAEKELGARYVD-LDELLAESDIISLHCPLTPETRHLI--NAEELAKMKPGA 230 (324)
T ss_pred CHHHHHHHHHHhcCCCEEEEECCCCC-hHHHhhcCceecc-HHHHHHhCCEEEEeCCCChHHhhhc--CHHHHHhCCCCe
Confidence 99999999999999999999999875 2333333466665 9999999999999999999999999 899999999999
Q ss_pred EEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccc
Q 018213 160 GYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPA 198 (359)
Q Consensus 160 ~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 198 (359)
++||++||..++++++.++|+++.+...+.+++..++..
T Consensus 231 ~lVNtaRG~~VDe~ALi~AL~~g~i~gaglDV~e~Ep~~ 269 (324)
T COG1052 231 ILVNTARGGLVDEQALIDALKSGKIAGAGLDVFENEPAL 269 (324)
T ss_pred EEEECCCccccCHHHHHHHHHhCCcceEEeeecCCCCCC
Confidence 999999999999999999999999988888888877653
No 19
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.96 E-value=1.8e-27 Score=199.48 Aligned_cols=264 Identities=23% Similarity=0.304 Sum_probs=217.3
Q ss_pred CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhh---cCCEEEEeeCChhHHHHHhccc
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAA---SCDVTFAMLADPESAMDVACGK 148 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~---~aDivi~~~p~~~~~~~~~~~~ 148 (359)
|+||.||+|+||..+.++|...||+|++||+++..++.+...|++..+++++++. ...+|.+.+|..+-|..++
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi--- 77 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVI--- 77 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHH---
Confidence 5799999999999999999999999999999999999999999988889888765 4799999999988999999
Q ss_pred ccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCC--
Q 018213 149 HGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGK-- 226 (359)
Q Consensus 149 ~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~lg~-- 226 (359)
+++.+.|.+|.+|||-++....+.....+.+++++++|+++..+|+......+.. ++++|++++++++.++|+.+..
T Consensus 78 ~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G~~~G~~-lMiGG~~~a~~~~~pif~~lA~ge 156 (300)
T COG1023 78 DDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSGGVWGAERGYC-LMIGGDEEAVERLEPIFKALAPGE 156 (300)
T ss_pred HHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCCCchhhhcCce-EEecCcHHHHHHHHHHHHhhCcCc
Confidence 8999999999999999999999999999999999999999999999988888776 6789999999999999999865
Q ss_pred -CeEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHhhcc-ccchhhhhcccccccC-CCCCC
Q 018213 227 -SRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVG--LDPNVLVEVVSQGA-ISAPMYSLKGPSMIES-LYPTA 301 (359)
Q Consensus 227 -~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~G--i~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~-~~~~~ 301 (359)
...++|+.|+++.+|++.|.+.+.++++++|.+.++++.. +|.+.+.++.+.++ ..||+++.......+. +...-
T Consensus 157 ~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D~~~VA~vW~hGSVIrSWLldLt~~Af~~d~~L~q~ 236 (300)
T COG1023 157 DGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYDLEAVAEVWNHGSVIRSWLLDLTAEAFKKDPDLDQI 236 (300)
T ss_pred CccccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCcchHHHHHHHHHHHHHhhCCCHHHh
Confidence 4578999999999999999999999999999999999865 56888889998875 5688777553332221 11000
Q ss_pred cchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHC
Q 018213 302 FPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSH 341 (359)
Q Consensus 302 ~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~ 341 (359)
...-.-..+-.+-++.+-+.|+|.|++... ++.+..++
T Consensus 237 ~g~v~dSGEGrWTv~~aldlgvpaPVia~a--l~~Rf~S~ 274 (300)
T COG1023 237 SGRVSDSGEGRWTVEEALDLGVPAPVIALA--LMMRFRSR 274 (300)
T ss_pred cCeeccCCCceeehHHHHhcCCCchHHHHH--HHHHHhcc
Confidence 000000001234566778899999998766 44444443
No 20
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.95 E-value=2e-28 Score=204.15 Aligned_cols=162 Identities=38% Similarity=0.664 Sum_probs=143.6
Q ss_pred CCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhccccc
Q 018213 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG 150 (359)
Q Consensus 71 ~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~ 150 (359)
+++|||||+|+||..+|++|.+.|++|++|||++++.+.+.+.|+..++++.|+++++|+|++|+|.+.+++.++++..
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~- 79 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGEN- 79 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTT-
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhH-
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999999995433
Q ss_pred ccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCCCeEE
Q 018213 151 AASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFY 230 (359)
Q Consensus 151 ~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~lg~~~~~ 230 (359)
+++.+++|+++||+|+..|....++.+.+.++|+.|+++|++|+++....+.+.++++|+++.+++++++|+.++.++++
T Consensus 80 i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg~~~a~~g~l~~~~gG~~~~~~~~~~~l~~~~~~v~~ 159 (163)
T PF03446_consen 80 ILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSGGPPGAEEGTLTIMVGGDEEAFERVRPLLEAMGKNVYH 159 (163)
T ss_dssp HGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEESHHHHHHHTTEEEEEES-HHHHHHHHHHHHHHEEEEEE
T ss_pred HhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeecccccccccceEEEccCCHHHHHHHHHHHHHHhCCcee
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999884
Q ss_pred -eCc
Q 018213 231 -LGD 233 (359)
Q Consensus 231 -~g~ 233 (359)
+|+
T Consensus 160 ~~G~ 163 (163)
T PF03446_consen 160 YVGP 163 (163)
T ss_dssp E-ES
T ss_pred eeCc
Confidence 464
No 21
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.95 E-value=9.6e-28 Score=222.79 Aligned_cols=272 Identities=16% Similarity=0.172 Sum_probs=215.8
Q ss_pred CCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC--------C------CccCCCHHHHhhcCCEEEEeeC
Q 018213 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--------G------AKYQPSPDEVAASCDVTFAMLA 136 (359)
Q Consensus 71 ~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~--------g------~~~~~~~~~~~~~aDivi~~~p 136 (359)
+|+|+|||+|.||..+|..|...|++|++|+|++++.+.+... | +..+.+++++++++|+|++++|
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~ 83 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVP 83 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECc
Confidence 4789999999999999999999999999999988776666543 2 3356688888899999999997
Q ss_pred ChhHHHHHhcccccccccCCCCCEEEeccCC-ChHH--HHHHHHHHHh---cCCeeecCCCCCCCccccCCceEEEecCC
Q 018213 137 DPESAMDVACGKHGAASGMGPGKGYVDVSTV-DGDT--SKLINGHIKA---TGASFLEAPVSGSKKPAEDGQLIFLAAGD 210 (359)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~-~~~~--~~~l~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 210 (359)
+.+++.++ +.++++.++|++++| .+.. ...+.+.+.+ .++.++..|....+.....+...++++++
T Consensus 84 -~~~~~~v~-------~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~~~~~~~~~~~~~~~~ 155 (328)
T PRK14618 84 -SKALRETL-------AGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEEIARFLPAATVVASPE 155 (328)
T ss_pred -hHHHHHHH-------HhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHHHHcCCCeEEEEEeCC
Confidence 44666665 446788899999886 4433 4566666655 56777777766555444446677788899
Q ss_pred HHHHHHHHHHHHHhCCCeEEeCc-----------------cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 018213 211 KSLYNTVAPLLDIMGKSRFYLGD-----------------VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLV 273 (359)
Q Consensus 211 ~~~~~~v~~ll~~lg~~~~~~g~-----------------~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~ 273 (359)
++.+++++++|+..+.+++...+ .|.+...|+..|.....+..++.|+..++++.|+++++++
T Consensus 156 ~~~~~~v~~ll~~~~~~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~~~~~~~ 235 (328)
T PRK14618 156 PGLARRVQAAFSGPSFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFGVALGAEEATFY 235 (328)
T ss_pred HHHHHHHHHHhCCCcEEEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHhCCCccchh
Confidence 99999999999999988874322 3556667777788888899999999999999999999999
Q ss_pred HHHhh----ccccchhhhhc--ccccccC---C-CCCCcchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCC
Q 018213 274 EVVSQ----GAISAPMYSLK--GPSMIES---L-YPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGL 343 (359)
Q Consensus 274 ~~~~~----~~~~s~~~~~~--~~~~~~~---~-~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~ 343 (359)
+++.. +++.|+.++++ ++.+.++ + +.++|.+.++.||++.+.+++++.++++|+.+++++++ +
T Consensus 236 ~~~~~gDl~~t~~s~~~rn~~~g~~~~~g~~~~~~~~~~~~~~g~kd~~~~~~la~~~~~~~Pl~~~~~~~~-------~ 308 (328)
T PRK14618 236 GLSGLGDLIATATSPHSRNRAAGEAIVRGVDREHLEAGGKVVEGLYTVKALDAWAKAHGHDLPIVEAVARVA-------R 308 (328)
T ss_pred cCcchhheeeEeccCCCccHHHHHHHhCCCCHHHHHHcCCEEecHHHHHHHHHHHHHhCCCCCHHHHHHHHH-------h
Confidence 99876 36678888877 3467776 3 56678888999999999999999999999999999888 4
Q ss_pred CCccHHHHHHHHHh
Q 018213 344 SDEDFSAVIEALKA 357 (359)
Q Consensus 344 ~~~d~~~~~~~~~~ 357 (359)
++.+..++++.+-+
T Consensus 309 ~~~~~~~~~~~~~~ 322 (328)
T PRK14618 309 GGWDPLAGLRSLMG 322 (328)
T ss_pred CCCCHHHHHHHHhc
Confidence 55666677666543
No 22
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=99.95 E-value=2.9e-28 Score=222.39 Aligned_cols=176 Identities=13% Similarity=0.117 Sum_probs=148.8
Q ss_pred eeeccccccccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCChhh
Q 018213 4 LVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIMG 83 (359)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~iG 83 (359)
++|..+++ ..+++|++++++|++.|+++.+++.++.|.|.+..... .++.++|+||||+|+||
T Consensus 92 V~nap~~n-a~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~g----------------~el~gkTvGIiG~G~IG 154 (324)
T COG0111 92 VVNAPGGN-AISVAELVLALLLALARRIPDADASQRRGEWDRKAFRG----------------TELAGKTVGIIGLGRIG 154 (324)
T ss_pred EEeCCCcc-hHHHHHHHHHHHHHHhcCchhhHHHHHcCCcccccccc----------------ccccCCEEEEECCCHHH
Confidence 44444443 35899999999999999999999999999998521111 12788999999999999
Q ss_pred HHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEe
Q 018213 84 TPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVD 163 (359)
Q Consensus 84 ~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~ 163 (359)
+.+|++++.+|++|++||+...+. .....+....+++++++++||||++|+|.+++|++++ +++.+..||+|+++||
T Consensus 155 ~~va~~l~afgm~v~~~d~~~~~~-~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i--~~~~~a~MK~gailIN 231 (324)
T COG0111 155 RAVAKRLKAFGMKVIGYDPYSPRE-RAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLI--NAEELAKMKPGAILIN 231 (324)
T ss_pred HHHHHHHHhCCCeEEEECCCCchh-hhccccceecccHHHHHhhCCEEEEcCCCCcchhccc--CHHHHhhCCCCeEEEE
Confidence 999999999999999999954332 2223456667899999999999999999999999999 8999999999999999
Q ss_pred ccCCChHHHHHHHHHHHhcCCeeecCCCCCCCcccc
Q 018213 164 VSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAE 199 (359)
Q Consensus 164 ~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 199 (359)
++||..+++++|.++|+++.+.....+++..+|...
T Consensus 232 ~aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~ 267 (324)
T COG0111 232 AARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPA 267 (324)
T ss_pred CCCcceecHHHHHHHHHcCCcceEEecCCCCCCCCC
Confidence 999999999999999999988888888887776544
No 23
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=99.94 E-value=1.7e-27 Score=217.97 Aligned_cols=177 Identities=13% Similarity=0.121 Sum_probs=147.5
Q ss_pred eeeeeccccccccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCCh
Q 018213 2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI 81 (359)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~ 81 (359)
.+...|+|+.. +++|++++++|++.|++..+.+.++.+.|.....+....+ ...++.+++|||||+|+
T Consensus 88 ~v~n~~g~~~~--~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~----------~~~~L~gktvGIiG~G~ 155 (311)
T PRK08410 88 AVKNVAGYSTE--SVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISR----------PLGEIKGKKWGIIGLGT 155 (311)
T ss_pred EEEcCCCCCCh--HHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCc----------cccccCCCEEEEECCCH
Confidence 45556788776 8899999999999999999999999999974322110000 01238899999999999
Q ss_pred hhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEE
Q 018213 82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY 161 (359)
Q Consensus 82 iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~v 161 (359)
||+.+|++++.+|++|.+|||+.... ..+.. ..++++++++||+|++|+|.+++|++++ +++.++.||+|+++
T Consensus 156 IG~~vA~~~~~fgm~V~~~d~~~~~~----~~~~~-~~~l~ell~~sDvv~lh~Plt~~T~~li--~~~~~~~Mk~~a~l 228 (311)
T PRK08410 156 IGKRVAKIAQAFGAKVVYYSTSGKNK----NEEYE-RVSLEELLKTSDIISIHAPLNEKTKNLI--AYKELKLLKDGAIL 228 (311)
T ss_pred HHHHHHHHHhhcCCEEEEECCCcccc----ccCce-eecHHHHhhcCCEEEEeCCCCchhhccc--CHHHHHhCCCCeEE
Confidence 99999999999999999999965321 12333 3489999999999999999999999999 89999999999999
Q ss_pred EeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccc
Q 018213 162 VDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPA 198 (359)
Q Consensus 162 i~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 198 (359)
||++||..+++++|.++|+++.+. ...+++..+|..
T Consensus 229 IN~aRG~vVDe~AL~~AL~~g~i~-AaLDV~~~EP~~ 264 (311)
T PRK08410 229 INVGRGGIVNEKDLAKALDEKDIY-AGLDVLEKEPME 264 (311)
T ss_pred EECCCccccCHHHHHHHHHcCCeE-EEEecCCCCCCC
Confidence 999999999999999999998888 778888777643
No 24
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=99.94 E-value=6.5e-26 Score=210.68 Aligned_cols=273 Identities=18% Similarity=0.225 Sum_probs=202.1
Q ss_pred CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC--------------CCccCCCHHHHhhcCCEEEEeeCC
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--------------GAKYQPSPDEVAASCDVTFAMLAD 137 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~--------------g~~~~~~~~~~~~~aDivi~~~p~ 137 (359)
|+|+|||+|.||..+|..|+..|++|.+|+|+++..+.+.+. ++....+++++++++|+|++|+|
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~- 80 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVP- 80 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCC-
Confidence 689999999999999999999999999999998877776654 24456678888899999999997
Q ss_pred hhHHHHHhcccccccccCCCCCEEEeccCC-ChHHHHHHHHHHHhc-----CCeeecCCCCCCCccccCCceEEEecCCH
Q 018213 138 PESAMDVACGKHGAASGMGPGKGYVDVSTV-DGDTSKLINGHIKAT-----GASFLEAPVSGSKKPAEDGQLIFLAAGDK 211 (359)
Q Consensus 138 ~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~-~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 211 (359)
+.+++.++ +++.+.+++++++|+++++ .+.....+.+.+.+. ...++..|....+.........++.+++.
T Consensus 81 ~~~~~~v~---~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~~~~~~P~~~~~~~~g~~~~~~~~~~~~ 157 (325)
T PRK00094 81 SQALREVL---KQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPIAVLSGPSFAKEVARGLPTAVVIASTDE 157 (325)
T ss_pred HHHHHHHH---HHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCceEEEECccHHHHHHcCCCcEEEEEeCCH
Confidence 57888888 7777778889999999754 333333344444332 33455566554333333445556667789
Q ss_pred HHHHHHHHHHHHhCCCeEEeCcc-----------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 018213 212 SLYNTVAPLLDIMGKSRFYLGDV-----------------GNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVE 274 (359)
Q Consensus 212 ~~~~~v~~ll~~lg~~~~~~g~~-----------------~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~ 274 (359)
+.++++.++|+..+.+++...+. |.....|+..|.+......++.|++.++++.|++++.+.+
T Consensus 158 ~~~~~~~~~l~~~~~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~d~~~~~~ 237 (325)
T PRK00094 158 ELAERVQELFHSPYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRLGVALGANPETFLG 237 (325)
T ss_pred HHHHHHHHHhCCCCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCChhhhhc
Confidence 99999999999999887776663 3334466777788888899999999999999999999988
Q ss_pred HHhhc----cccchhhhhcc--cccccCC-C-----CCCcchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCC
Q 018213 275 VVSQG----AISAPMYSLKG--PSMIESL-Y-----PTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHG 342 (359)
Q Consensus 275 ~~~~~----~~~s~~~~~~~--~~~~~~~-~-----~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g 342 (359)
....+ ...++..+++. ..+..+. + ..+ .+.++.||++.+.++++++|+++|+++++++++
T Consensus 238 ~~~~~~~~~~~~s~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~kd~~~~~~~a~~~~~~~P~~~~~~~~~------- 309 (325)
T PRK00094 238 LAGLGDLVLTCTSPLSRNRRFGLALGQGKSLEEALAEIG-MVAEGVRTAKAVYELAKKLGVEMPITEAVYAVL------- 309 (325)
T ss_pred ccHhhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHHcC-CEeecHHHHHHHHHHHHHhCCCCCHHHHHHHHH-------
Confidence 76543 23344443332 2232222 1 112 456789999999999999999999999999987
Q ss_pred CCCccHHHHHHHHH
Q 018213 343 LSDEDFSAVIEALK 356 (359)
Q Consensus 343 ~~~~d~~~~~~~~~ 356 (359)
.++.+...+++.+.
T Consensus 310 ~~~~~~~~~~~~~~ 323 (325)
T PRK00094 310 YEGKDPREAVEDLM 323 (325)
T ss_pred cCCCCHHHHHHHHh
Confidence 46777777777664
No 25
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=99.94 E-value=2.1e-27 Score=217.86 Aligned_cols=177 Identities=11% Similarity=0.075 Sum_probs=148.4
Q ss_pred eeeeeccccccccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCCh
Q 018213 2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI 81 (359)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~ 81 (359)
.+..+|+|+.. +++|++++++|+++|++..+.+.++.|.|.......+. ..++.++++||||+|+
T Consensus 91 ~V~n~~~~~~~--~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~-------------g~~L~gktvGIiG~G~ 155 (323)
T PRK15409 91 LLMHTPTVLTE--TVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWF-------------GTDVHHKTLGIVGMGR 155 (323)
T ss_pred EEEeCCCCCch--HHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccc-------------cCCCCCCEEEEEcccH
Confidence 45566888776 89999999999999999999999999999643111110 1128899999999999
Q ss_pred hhHHHHHHHH-HCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCE
Q 018213 82 MGTPMAQNLL-KAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKG 160 (359)
Q Consensus 82 iG~~ia~~l~-~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~ 160 (359)
||+.+|+++. .+|++|.+|+|.... +.....++.. .++++++++||+|++|+|.+++|++++ +++.+..||+|++
T Consensus 156 IG~~va~~l~~~fgm~V~~~~~~~~~-~~~~~~~~~~-~~l~ell~~sDvv~lh~plt~~T~~li--~~~~l~~mk~ga~ 231 (323)
T PRK15409 156 IGMALAQRAHFGFNMPILYNARRHHK-EAEERFNARY-CDLDTLLQESDFVCIILPLTDETHHLF--GAEQFAKMKSSAI 231 (323)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCch-hhHHhcCcEe-cCHHHHHHhCCEEEEeCCCChHHhhcc--CHHHHhcCCCCeE
Confidence 9999999998 999999999987532 2223335544 489999999999999999999999999 8899999999999
Q ss_pred EEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCcc
Q 018213 161 YVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP 197 (359)
Q Consensus 161 vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 197 (359)
+||++||..+++++|.++|+++.+.....+++..++.
T Consensus 232 lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~ 268 (323)
T PRK15409 232 FINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPL 268 (323)
T ss_pred EEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCC
Confidence 9999999999999999999999888888888877754
No 26
>PLN03139 formate dehydrogenase; Provisional
Probab=99.94 E-value=6.3e-27 Score=217.77 Aligned_cols=180 Identities=14% Similarity=0.087 Sum_probs=152.1
Q ss_pred eeeeeccccccccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCCh
Q 018213 2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI 81 (359)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~ 81 (359)
.+..+|+|... +++|++++++|++.|++..+.+.++.|.|....... ...++.+++|||||+|+
T Consensus 146 ~V~n~~g~na~--sVAE~al~liL~l~R~~~~~~~~~~~g~W~~~~~~~--------------~~~~L~gktVGIVG~G~ 209 (386)
T PLN03139 146 TVAEVTGSNVV--SVAEDELMRILILLRNFLPGYHQVVSGEWNVAGIAY--------------RAYDLEGKTVGTVGAGR 209 (386)
T ss_pred EEEECCCcCcH--HHHHHHHHHHHHHHcCcHHHHHHHHhCCCccccccC--------------CCcCCCCCEEEEEeecH
Confidence 44555655554 899999999999999999999999999997321100 01128899999999999
Q ss_pred hhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEE
Q 018213 82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY 161 (359)
Q Consensus 82 iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~v 161 (359)
||+.+|++|+.+|++|.+||++....+...+.|+....++++++++||+|++|+|.+++|++++ +++.+..|++|+++
T Consensus 210 IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li--~~~~l~~mk~ga~l 287 (386)
T PLN03139 210 IGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMF--NKERIAKMKKGVLI 287 (386)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHh--CHHHHhhCCCCeEE
Confidence 9999999999999999999998644444445567667799999999999999999999999999 78899999999999
Q ss_pred EeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCcccc
Q 018213 162 VDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAE 199 (359)
Q Consensus 162 i~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 199 (359)
||++||..+++++|.++|+++.+.....+++..+|...
T Consensus 288 IN~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~~EPlp~ 325 (386)
T PLN03139 288 VNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPK 325 (386)
T ss_pred EECCCCchhhHHHHHHHHHcCCceEEEEcCCCCCCCCC
Confidence 99999999999999999999999888888888776543
No 27
>PRK07574 formate dehydrogenase; Provisional
Probab=99.94 E-value=7.1e-27 Score=217.62 Aligned_cols=177 Identities=14% Similarity=0.085 Sum_probs=148.3
Q ss_pred eeeccccccccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCChhh
Q 018213 4 LVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIMG 83 (359)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~iG 83 (359)
++|..+++ ..+++|++++++|++.|++..+.+.++.+.|........ ..++.+++|||||+|+||
T Consensus 140 V~n~~g~~-a~~VAE~al~l~L~l~R~~~~~~~~~~~g~W~~~~~~~~--------------~~~L~gktVGIvG~G~IG 204 (385)
T PRK07574 140 VAEVTGSN-SISVAEHVVMMILALVRNYEPSHRQAVEGGWNIADCVSR--------------SYDLEGMTVGIVGAGRIG 204 (385)
T ss_pred EEcCCCCc-hHHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCccccccc--------------ceecCCCEEEEECCCHHH
Confidence 34433433 248999999999999999999999999999974321100 112888999999999999
Q ss_pred HHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEe
Q 018213 84 TPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVD 163 (359)
Q Consensus 84 ~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~ 163 (359)
+.+|++|+.+|++|.+|||+....+.....++....++++++++||+|++|+|.+++|++++ +++.++.||+|+++||
T Consensus 205 ~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li--~~~~l~~mk~ga~lIN 282 (385)
T PRK07574 205 LAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLF--DADVLSRMKRGSYLVN 282 (385)
T ss_pred HHHHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHh--CHHHHhcCCCCcEEEE
Confidence 99999999999999999998644333334566666799999999999999999999999999 7899999999999999
Q ss_pred ccCCChHHHHHHHHHHHhcCCeeecCCCCCCCcc
Q 018213 164 VSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP 197 (359)
Q Consensus 164 ~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 197 (359)
++|+..+++++|.++|+++.+.....+++..++.
T Consensus 283 ~aRG~iVDe~AL~~AL~sG~i~GAaLDV~~~EPl 316 (385)
T PRK07574 283 TARGKIVDRDAVVRALESGHLAGYAGDVWFPQPA 316 (385)
T ss_pred CCCCchhhHHHHHHHHHhCCccEEEEecCCCCCC
Confidence 9999999999999999999888888888877654
No 28
>PRK06487 glycerate dehydrogenase; Provisional
Probab=99.94 E-value=9.5e-27 Score=213.53 Aligned_cols=176 Identities=14% Similarity=0.127 Sum_probs=147.0
Q ss_pred eeeeeccccccccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCCh
Q 018213 2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI 81 (359)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~ 81 (359)
.+...|+|+.. +++|++++++|+++|++..+.+.++.|.|.....+... . ....++.+++|||||+|+
T Consensus 91 ~v~n~~g~~~~--~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~--~--------~~~~~l~gktvgIiG~G~ 158 (317)
T PRK06487 91 TVCNCQGYGTP--SVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLL--D--------FPIVELEGKTLGLLGHGE 158 (317)
T ss_pred EEEeCCCCCcc--hHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccc--c--------CcccccCCCEEEEECCCH
Confidence 45556777766 89999999999999999999999999999754321110 0 001128899999999999
Q ss_pred hhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEE
Q 018213 82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY 161 (359)
Q Consensus 82 iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~v 161 (359)
||+.+|++++.+|++|.+|+|.... . ... ..++++++++||+|++|+|.+++|++++ +++.++.||+|+++
T Consensus 159 IG~~vA~~l~~fgm~V~~~~~~~~~-~-----~~~-~~~l~ell~~sDiv~l~lPlt~~T~~li--~~~~~~~mk~ga~l 229 (317)
T PRK06487 159 LGGAVARLAEAFGMRVLIGQLPGRP-A-----RPD-RLPLDELLPQVDALTLHCPLTEHTRHLI--GARELALMKPGALL 229 (317)
T ss_pred HHHHHHHHHhhCCCEEEEECCCCCc-c-----ccc-ccCHHHHHHhCCEEEECCCCChHHhcCc--CHHHHhcCCCCeEE
Confidence 9999999999999999999986431 1 122 2489999999999999999999999999 89999999999999
Q ss_pred EeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccc
Q 018213 162 VDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPA 198 (359)
Q Consensus 162 i~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 198 (359)
||++||..+++++|.++|+++.+.....+++..+|..
T Consensus 230 IN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~ 266 (317)
T PRK06487 230 INTARGGLVDEQALADALRSGHLGGAATDVLSVEPPV 266 (317)
T ss_pred EECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCC
Confidence 9999999999999999999998888888888777643
No 29
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.94 E-value=1.6e-24 Score=199.18 Aligned_cols=266 Identities=13% Similarity=0.118 Sum_probs=206.5
Q ss_pred CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHH-----------HhCC-------------CccCCCHHHHhhc
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL-----------ISLG-------------AKYQPSPDEVAAS 127 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~-----------~~~g-------------~~~~~~~~~~~~~ 127 (359)
++|+|||+|.||..+|..|+..|++|++||++++..+.. .+.| +..+.++.+++++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~ 82 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD 82 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence 579999999999999999999999999999998655432 2333 2466788888999
Q ss_pred CCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEe
Q 018213 128 CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLA 207 (359)
Q Consensus 128 aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (359)
+|+|+.++|...+.+..++ .++....+++.++ . |+.+......+.+.+...+..+.++|+.+... .+++.++
T Consensus 83 ad~Vi~avpe~~~~k~~~~--~~l~~~~~~~~ii-~-ssts~~~~~~la~~~~~~~~~~~~hp~~p~~~----~~lveiv 154 (308)
T PRK06129 83 ADYVQESAPENLELKRALF--AELDALAPPHAIL-A-SSTSALLASAFTEHLAGRERCLVAHPINPPYL----IPVVEVV 154 (308)
T ss_pred CCEEEECCcCCHHHHHHHH--HHHHHhCCCcceE-E-EeCCCCCHHHHHHhcCCcccEEEEecCCCccc----CceEEEe
Confidence 9999999998766666553 3443344444444 3 44444456678888766677778899875321 1345566
Q ss_pred c---CCHHHHHHHHHHHHHhCCCeEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccch
Q 018213 208 A---GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAP 284 (359)
Q Consensus 208 ~---g~~~~~~~v~~ll~~lg~~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~ 284 (359)
+ ++++.++++.++++.+|+++++++..+.+. ++++ + +.+.+.|++.++++.|+++++++++++.+.+.+|
T Consensus 155 ~~~~t~~~~~~~~~~~~~~lG~~~v~v~~~~~G~---i~nr-l---~~a~~~EA~~l~~~g~~~~~~id~~~~~~~g~~~ 227 (308)
T PRK06129 155 PAPWTAPATLARAEALYRAAGQSPVRLRREIDGF---VLNR-L---QGALLREAFRLVADGVASVDDIDAVIRDGLGLRW 227 (308)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEecCCCccH---HHHH-H---HHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCc
Confidence 5 689999999999999999999998755443 3333 2 3467889999999999999999999999988887
Q ss_pred hhhhcccccccCCCCCCcchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHH
Q 018213 285 MYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEA 354 (359)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~~~~d~~~~~~~ 354 (359)
.+ .+|.+..+.+.+++......||..+..+++++.+.|.|++.-..+.+....+.-.+..++..+.++
T Consensus 228 ~~--~gp~~~~d~~~~~g~~~~~~k~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (308)
T PRK06129 228 SF--MGPFETIDLNAPGGVADYAQRYGPMYRRMAAERGQPVPWDGELVARVEAERRAALPLDQLAARQAW 295 (308)
T ss_pred cC--cCHHHHHhccccccHHHHHHHHHHHHHhhccccCCCchhhHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 77 578888888878888889999999999999999999999988877666677666777777777554
No 30
>PRK06932 glycerate dehydrogenase; Provisional
Probab=99.93 E-value=1.6e-26 Score=211.56 Aligned_cols=176 Identities=13% Similarity=0.087 Sum_probs=146.2
Q ss_pred eeeeeccccccccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCCh
Q 018213 2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI 81 (359)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~ 81 (359)
.+...|+|+.. +++|++++++|++.|++..+.+.++.+.|.....+... .....++.+++|||||+|+
T Consensus 90 ~v~n~~g~~~~--~vAE~~i~l~l~~~R~~~~~~~~~~~~~W~~~~~~~~~----------~~~~~~l~gktvgIiG~G~ 157 (314)
T PRK06932 90 AVKNVTGYSST--TVPEHVLGMIFALKHSLMGWYRDQLSDRWATCKQFCYF----------DYPITDVRGSTLGVFGKGC 157 (314)
T ss_pred EEEeCCCCChh--HHHHHHHHHHHHHHhChHHHHHHHHcCCCCcCcccccc----------CCcccccCCCEEEEECCCH
Confidence 45555777776 88999999999999999999999999999743221100 0011238899999999999
Q ss_pred hhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEE
Q 018213 82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY 161 (359)
Q Consensus 82 iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~v 161 (359)
||+.+|++++.+|++|++|++.... .. .. ...++++++++||+|++|+|.+++|++++ +++.++.||+|+++
T Consensus 158 IG~~va~~l~~fg~~V~~~~~~~~~--~~---~~-~~~~l~ell~~sDiv~l~~Plt~~T~~li--~~~~l~~mk~ga~l 229 (314)
T PRK06932 158 LGTEVGRLAQALGMKVLYAEHKGAS--VC---RE-GYTPFEEVLKQADIVTLHCPLTETTQNLI--NAETLALMKPTAFL 229 (314)
T ss_pred HHHHHHHHHhcCCCEEEEECCCccc--cc---cc-ccCCHHHHHHhCCEEEEcCCCChHHhccc--CHHHHHhCCCCeEE
Confidence 9999999999999999999986421 11 11 13589999999999999999999999999 89999999999999
Q ss_pred EeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCcc
Q 018213 162 VDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP 197 (359)
Q Consensus 162 i~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 197 (359)
||++||..+++++|.++|+++.+.....+++..+|.
T Consensus 230 IN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~~~EP~ 265 (314)
T PRK06932 230 INTGRGPLVDEQALLDALENGKIAGAALDVLVKEPP 265 (314)
T ss_pred EECCCccccCHHHHHHHHHcCCccEEEEecCCCCCC
Confidence 999999999999999999999888888888877764
No 31
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.93 E-value=1e-24 Score=200.52 Aligned_cols=257 Identities=19% Similarity=0.228 Sum_probs=188.9
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhccc
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK 148 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~ 148 (359)
.++|+|+|||+|+||+++|+.|..+|++|.+|+|++. .+++++++++|+|++++|. ..++.++
T Consensus 2 ~~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~-------------~~~~~~~~~advvi~~vp~-~~~~~v~--- 64 (308)
T PRK14619 2 TQPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG-------------LSLAAVLADADVIVSAVSM-KGVRPVA--- 64 (308)
T ss_pred CCCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC-------------CCHHHHHhcCCEEEEECCh-HHHHHHH---
Confidence 3458999999999999999999999999999999753 3677888999999999985 5888888
Q ss_pred ccccc-cCCCCCEEEeccCC-ChHHHHHHHHHHHhcCCeeecCCCC---CCC----ccccCCceEEEecCCHHHHHHHHH
Q 018213 149 HGAAS-GMGPGKGYVDVSTV-DGDTSKLINGHIKATGASFLEAPVS---GSK----KPAEDGQLIFLAAGDKSLYNTVAP 219 (359)
Q Consensus 149 ~~~~~-~l~~~~~vi~~s~~-~~~~~~~l~~~l~~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~g~~~~~~~v~~ 219 (359)
+.+.. .+++++++|+++++ .+.....+.+.+.. .+.++|+. ++. .........++++++.+.++.+++
T Consensus 65 ~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~---~~~~~~v~~i~gp~~a~ei~~~~~~~~~~ag~~~~~~~~v~~ 141 (308)
T PRK14619 65 EQVQALNLPPETIIVTATKGLDPETTRTPSQIWQA---AFPNHPVVVLSGPNLSKEIQQGLPAATVVASRDLAAAETVQQ 141 (308)
T ss_pred HHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHH---HcCCCceEEEECCCcHHHHhcCCCeEEEEEeCCHHHHHHHHH
Confidence 66644 37789999998874 33333333333322 12334442 221 112234667788889999999999
Q ss_pred HHHHhCCCeEEeCc-c--ChHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcccc
Q 018213 220 LLDIMGKSRFYLGD-V--GNGAAM--------------KLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAIS 282 (359)
Q Consensus 220 ll~~lg~~~~~~g~-~--~~~~~~--------------kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~ 282 (359)
+|+..+.+++..++ . ..+..+ ++..|.....+..++.|++.++++.|++++.+.++. +.+.
T Consensus 142 ll~~~~~~~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~l~~~~G~~~~t~~~~~--g~gd 219 (308)
T PRK14619 142 IFSSERFRVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIRVGTHLGAQTETFYGLS--GLGD 219 (308)
T ss_pred HhCCCcEEEEecCCchhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCCcccccccc--chhh
Confidence 99999988887776 2 222333 366788888889999999999999999999998852 3334
Q ss_pred chhhhhcccccccCCCCCCcchhHH----------------HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCc
Q 018213 283 APMYSLKGPSMIESLYPTAFPLKHQ----------------QKDLRLALGLAESVSQSTPIAAAANELYKVAKSHGLSDE 346 (359)
Q Consensus 283 s~~~~~~~~~~~~~~~~~~~~~~~~----------------~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~~~~ 346 (359)
++. ..+.+..+++..++.+..+ .||++.+.+++++.|+++|+.+++++++ +++.
T Consensus 220 ~~~---t~~~~~~rn~~~g~~l~~g~~~~~~~~~~~~~~eG~~~~~~~~~~~~~~~~~~Pl~~~v~~i~-------~~~~ 289 (308)
T PRK14619 220 LLA---TCTSPLSRNYQVGYGLAQGKSLEQILAELEGTAEGVNTANVLVQLAQQQNIAVPITEQVYRLL-------QGEI 289 (308)
T ss_pred hhe---eecCCCCccHHHHHHHHCCCCHHHHHHhcCCEeecHHHHHHHHHHHHHcCCCCCHHHHHHHHH-------cCCC
Confidence 333 2345555666555544444 8999999999999999999999999988 3555
Q ss_pred cHHHHHHHHHh
Q 018213 347 DFSAVIEALKA 357 (359)
Q Consensus 347 d~~~~~~~~~~ 357 (359)
+..++++.+-+
T Consensus 290 ~~~~~~~~l~~ 300 (308)
T PRK14619 290 TPQQALEELME 300 (308)
T ss_pred CHHHHHHHHHc
Confidence 66666666543
No 32
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=99.93 E-value=6.4e-24 Score=201.89 Aligned_cols=255 Identities=14% Similarity=0.113 Sum_probs=193.4
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCc----------------cCCCHHHHhhcCCEEE
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK----------------YQPSPDEVAASCDVTF 132 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~----------------~~~~~~~~~~~aDivi 132 (359)
...|+|||||+|.||..+|..|+. |++|++||+++++++.+. .|.. .+++..+.+++||++|
T Consensus 4 ~~~mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvi 81 (425)
T PRK15182 4 IDEVKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELK-NGVDVNLETTEEELREARYLKFTSEIEKIKECNFYI 81 (425)
T ss_pred CCCCeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEE
Confidence 345899999999999999999887 699999999999988877 3332 2334445688999999
Q ss_pred EeeCCh------hHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhc--CCeeec--------CCCCCCCc
Q 018213 133 AMLADP------ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT--GASFLE--------APVSGSKK 196 (359)
Q Consensus 133 ~~~p~~------~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~--~~~~~~--------~~~~~~~~ 196 (359)
+|+|.+ .++..++...+.+.+.+++|+++|+.|+..|...+.+.+...+. |+.+.+ .++.++..
T Consensus 82 i~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G~a 161 (425)
T PRK15182 82 ITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINPGDK 161 (425)
T ss_pred EEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCCcc
Confidence 999987 34455553336777889999999999999999988765544332 444333 22333322
Q ss_pred ccc-CCceEEEecCCHHHHHHHHHHHHHhC-CCeEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 018213 197 PAE-DGQLIFLAAGDKSLYNTVAPLLDIMG-KSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVE 274 (359)
Q Consensus 197 ~~~-~~~~~~~~~g~~~~~~~v~~ll~~lg-~~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~ 274 (359)
... .....++.|++++..+.+..+++.+. ..++.+++++.++..|++.|.+....+++++|+..+|++.|+|..++.+
T Consensus 162 ~~~~~~~~riv~G~~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~lae~~GiD~~~v~~ 241 (425)
T PRK15182 162 KHRLTNIKKITSGSTAQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAIIFNRLNIDTEAVLR 241 (425)
T ss_pred cccccCCCeEEECCCHHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHH
Confidence 222 22333566778888889999999886 3577889999999999999999999999999999999999999999999
Q ss_pred HHhhccccchhhhhcccccccCCCCCC-cchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 018213 275 VVSQGAISAPMYSLKGPSMIESLYPTA-FPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVA 338 (359)
Q Consensus 275 ~~~~~~~~s~~~~~~~~~~~~~~~~~~-~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a 338 (359)
.+... |.+. .+.|| +....+.||...++..+++.|+++++++++.++.+..
T Consensus 242 a~~~~----~~~~---------~~~pG~vGG~ClpkD~~~L~~~a~~~g~~~~l~~~a~~iN~~~ 293 (425)
T PRK15182 242 AAGSK----WNFL---------PFRPGLVGGHCIGVDPYYLTHKSQGIGYYPEIILAGRRLNDNM 293 (425)
T ss_pred HhcCC----CCcc---------cCCCCccccccccccHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 85533 2211 12344 4445568899999999999999999999988776543
No 33
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=99.92 E-value=6.1e-26 Score=214.66 Aligned_cols=172 Identities=13% Similarity=0.066 Sum_probs=147.2
Q ss_pred eeeeeccccccccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCCh
Q 018213 2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI 81 (359)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~ 81 (359)
.+...|+|+.. +++|++++++|+++|++..+.+.++.|.|....... + ++.+++|||||+|+
T Consensus 100 ~V~n~pg~~~~--aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~~~~---~-------------~L~gktvGIiG~G~ 161 (409)
T PRK11790 100 PVFNAPFSNTR--SVAELVIGEIILLLRGIPEKNAKAHRGGWNKSAAGS---F-------------EVRGKTLGIVGYGH 161 (409)
T ss_pred EEEeCCCCChH--HHHHHHHHHHHHHHcChHHHHHHHHcCcccccccCc---c-------------cCCCCEEEEECCCH
Confidence 34555788776 889999999999999999999999999997432110 1 28889999999999
Q ss_pred hhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEE
Q 018213 82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY 161 (359)
Q Consensus 82 iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~v 161 (359)
||+.+|+++..+|++|.+||+++... ..++....++++++++||+|++|+|.+++|++++ +++.+..||+|+++
T Consensus 162 IG~~vA~~~~~fGm~V~~~d~~~~~~----~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li--~~~~l~~mk~ga~l 235 (409)
T PRK11790 162 IGTQLSVLAESLGMRVYFYDIEDKLP----LGNARQVGSLEELLAQSDVVSLHVPETPSTKNMI--GAEELALMKPGAIL 235 (409)
T ss_pred HHHHHHHHHHHCCCEEEEECCCcccc----cCCceecCCHHHHHhhCCEEEEcCCCChHHhhcc--CHHHHhcCCCCeEE
Confidence 99999999999999999999864321 1234456689999999999999999999999999 88999999999999
Q ss_pred EeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCcc
Q 018213 162 VDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP 197 (359)
Q Consensus 162 i~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 197 (359)
||++||..+++++|.++|+++.+.....+++..++.
T Consensus 236 IN~aRG~~vde~aL~~aL~~g~i~gaalDVf~~EP~ 271 (409)
T PRK11790 236 INASRGTVVDIDALADALKSGHLAGAAIDVFPVEPK 271 (409)
T ss_pred EECCCCcccCHHHHHHHHHcCCceEEEEcCCCCCCC
Confidence 999999999999999999999888888888877653
No 34
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=99.92 E-value=5.3e-26 Score=199.55 Aligned_cols=176 Identities=13% Similarity=0.121 Sum_probs=154.8
Q ss_pred CeeeeeccccccccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCC
Q 018213 1 MTLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMG 80 (359)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G 80 (359)
++++..|.|++. +++|++++++++++|++......++.|.|.+....+. ++.++++||+|+|
T Consensus 94 i~Vvn~P~~Ns~--saAEltigli~SLaR~i~~A~~s~k~g~wnr~~~~G~----------------el~GKTLgvlG~G 155 (406)
T KOG0068|consen 94 ILVVNTPTANSR--SAAELTIGLILSLARQIGQASASMKEGKWNRVKYLGW----------------ELRGKTLGVLGLG 155 (406)
T ss_pred eEEEeCCCCChH--HHHHHHHHHHHHHhhhcchhheeeecCceeecceeee----------------EEeccEEEEeecc
Confidence 467888999998 9999999999999999999999999999985432221 2888999999999
Q ss_pred hhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCE
Q 018213 81 IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKG 160 (359)
Q Consensus 81 ~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~ 160 (359)
+||+.+|.++...|+.|+.||+-.. .+.....|++.. +++|++..||+|.+|+|.+++|++++ +++.+..||+|..
T Consensus 156 rIGseVA~r~k~~gm~vI~~dpi~~-~~~~~a~gvq~v-sl~Eil~~ADFitlH~PLtP~T~~li--n~~tfA~mKkGVr 231 (406)
T KOG0068|consen 156 RIGSEVAVRAKAMGMHVIGYDPITP-MALAEAFGVQLV-SLEEILPKADFITLHVPLTPSTEKLL--NDETFAKMKKGVR 231 (406)
T ss_pred cchHHHHHHHHhcCceEEeecCCCc-hHHHHhccceee-eHHHHHhhcCEEEEccCCCcchhhcc--CHHHHHHhhCCcE
Confidence 9999999999999999999998543 244556688776 89999999999999999999999999 8899999999999
Q ss_pred EEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccc
Q 018213 161 YVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPA 198 (359)
Q Consensus 161 vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 198 (359)
+||++||..+|+.+|.++++++.+.....+++..++..
T Consensus 232 iIN~aRGGvVDe~ALv~Al~sG~vaGaAlDVy~~Epp~ 269 (406)
T KOG0068|consen 232 IINVARGGVVDEPALVRALDSGQVAGAALDVYPEEPPK 269 (406)
T ss_pred EEEecCCceechHHHHHHHhcCcccceeeecccCCCCc
Confidence 99999999999999999999987777777787776654
No 35
>PLN02306 hydroxypyruvate reductase
Probab=99.92 E-value=6.8e-26 Score=211.65 Aligned_cols=178 Identities=12% Similarity=0.029 Sum_probs=145.9
Q ss_pred eeeeeccccccccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCCh
Q 018213 2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI 81 (359)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~ 81 (359)
.+..+|+|... +++|++++++|+++|++..+.+.++.|.|..+...... ..++.+++|||||+|+
T Consensus 111 ~V~n~pg~~~~--~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~-------------g~~L~gktvGIiG~G~ 175 (386)
T PLN02306 111 AVGNTPGVLTE--TTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFV-------------GNLLKGQTVGVIGAGR 175 (386)
T ss_pred EEEECCCcCHH--HHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccC-------------CcCCCCCEEEEECCCH
Confidence 45566777776 89999999999999999999999999988532211110 0128889999999999
Q ss_pred hhHHHHHHHH-HCCCcEEEEcCCccch-hHH-HhCC------------CccCCCHHHHhhcCCEEEEeeCChhHHHHHhc
Q 018213 82 MGTPMAQNLL-KAGCDVTVWNRTKSKC-DPL-ISLG------------AKYQPSPDEVAASCDVTFAMLADPESAMDVAC 146 (359)
Q Consensus 82 iG~~ia~~l~-~~g~~V~~~d~~~~~~-~~~-~~~g------------~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~ 146 (359)
||+.+|+++. .+|++|.+||+++... ... ...+ .....++++++++||+|++|+|.+++|++++
T Consensus 176 IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~li- 254 (386)
T PLN02306 176 IGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDKTTYHLI- 254 (386)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeCCCChhhhhhc-
Confidence 9999999985 8999999999976421 110 1111 1234589999999999999999999999999
Q ss_pred ccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCc
Q 018213 147 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKK 196 (359)
Q Consensus 147 ~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 196 (359)
+++.++.||+|+++||++||..+++++|.++|+++.+.....+++..++
T Consensus 255 -n~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~EP 303 (386)
T PLN02306 255 -NKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEP 303 (386)
T ss_pred -CHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCCC
Confidence 8999999999999999999999999999999999888888888888775
No 36
>PRK13243 glyoxylate reductase; Reviewed
Probab=99.92 E-value=7.5e-26 Score=208.98 Aligned_cols=181 Identities=13% Similarity=0.063 Sum_probs=148.7
Q ss_pred eeeeeccccccccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCCh
Q 018213 2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI 81 (359)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~ 81 (359)
.+..+|+|+.. +++|++++++|++.|+++.+.+.++.|.|......... . .....++.+++|||||+|+
T Consensus 92 ~v~n~~g~~~~--~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~-~--------~~~g~~L~gktvgIiG~G~ 160 (333)
T PRK13243 92 YVTNTPGVLTE--ATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHP-L--------MFLGYDVYGKTIGIIGFGR 160 (333)
T ss_pred EEEECCCCChH--HHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcccccccc-c--------cccccCCCCCEEEEECcCH
Confidence 45556777665 89999999999999999999999999999742110000 0 0011238899999999999
Q ss_pred hhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEE
Q 018213 82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY 161 (359)
Q Consensus 82 iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~v 161 (359)
||+.+|++|..+|++|.+|||++... .....+... .++++++++||+|++|+|.+++|++++ +++.++.|++|+++
T Consensus 161 IG~~vA~~l~~~G~~V~~~d~~~~~~-~~~~~~~~~-~~l~ell~~aDiV~l~lP~t~~T~~~i--~~~~~~~mk~ga~l 236 (333)
T PRK13243 161 IGQAVARRAKGFGMRILYYSRTRKPE-AEKELGAEY-RPLEELLRESDFVSLHVPLTKETYHMI--NEERLKLMKPTAIL 236 (333)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCChh-hHHHcCCEe-cCHHHHHhhCCEEEEeCCCChHHhhcc--CHHHHhcCCCCeEE
Confidence 99999999999999999999986542 222334443 589999999999999999999999999 78899999999999
Q ss_pred EeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCcc
Q 018213 162 VDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP 197 (359)
Q Consensus 162 i~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 197 (359)
||++||..+++++|.++|+++.+.....+++..+|.
T Consensus 237 IN~aRg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~ 272 (333)
T PRK13243 237 VNTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPY 272 (333)
T ss_pred EECcCchhcCHHHHHHHHHcCCeEEEEeccCCCCCC
Confidence 999999999999999999999888888888877754
No 37
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=99.92 E-value=3.9e-23 Score=196.66 Aligned_cols=251 Identities=15% Similarity=0.105 Sum_probs=185.8
Q ss_pred CCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCcc-CCCHHHH---------------hhcCCEEEEe
Q 018213 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY-QPSPDEV---------------AASCDVTFAM 134 (359)
Q Consensus 71 ~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~-~~~~~~~---------------~~~aDivi~~ 134 (359)
.|+|+|||+|.||..+|..|+..|++|++||+++++.+.+....... ...++++ +++||+|++|
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~ 82 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIA 82 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEE
Confidence 47899999999999999999999999999999998887654322211 1123332 2379999999
Q ss_pred eCCh---------hHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCC--------------eeecCC-
Q 018213 135 LADP---------ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGA--------------SFLEAP- 190 (359)
Q Consensus 135 ~p~~---------~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~--------------~~~~~~- 190 (359)
+|.+ ..+..++ +.+.+.+++|++||+.|+.+|...+.+...+.+.+. .++.+|
T Consensus 83 vptp~~~~~~~dl~~v~~~~---~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f~v~~~PE 159 (415)
T PRK11064 83 VPTPFKGDHEPDLTYVEAAA---KSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADINIAYCPE 159 (415)
T ss_pred cCCCCCCCCCcChHHHHHHH---HHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCeEEEECCC
Confidence 9976 4666666 777888999999999999999999999887766432 234555
Q ss_pred -CCCCCccccCCceEEEecC-CHHHHHHHHHHHHHhCCCeEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 018213 191 -VSGSKKPAEDGQLIFLAAG-DKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLD 268 (359)
Q Consensus 191 -~~~~~~~~~~~~~~~~~~g-~~~~~~~v~~ll~~lg~~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~ 268 (359)
+.++...........+++| +++..++++++++.++..++++++++.++..|++.|.+....++.++|+..+|++.|+|
T Consensus 160 ~~~~G~~~~~~~~~~~vvgG~~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~lae~~GiD 239 (415)
T PRK11064 160 RVLPGQVMVELIKNDRVIGGMTPVCSARASELYKIFLEGECVVTNSRTAEMCKLTENSFRDVNIAFANELSLICADQGIN 239 (415)
T ss_pred ccCCCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhcCCCeeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3333322222333355677 99999999999999998888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccchhhhhcccccccCCCCCCcchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 018213 269 PNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVA 338 (359)
Q Consensus 269 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a 338 (359)
+.++.+.+....... .+.| -+|+....+.||...+ ..+.+.+.++++++.++-+..
T Consensus 240 ~~~v~~~~~~~~ri~----~l~p-------G~G~GG~ClpkD~~~L---~~~~~~~~~l~~~a~~~N~~~ 295 (415)
T PRK11064 240 VWELIRLANRHPRVN----ILQP-------GPGVGGHCIAVDPWFI---VAQNPQQARLIRTAREVNDGK 295 (415)
T ss_pred HHHHHHHhccCCCcc----cCCC-------CCCCCCccccccHHHH---HHhcCCccHHHHHHHHHHHHh
Confidence 999999887543211 1111 1223334456666554 334566677777776655444
No 38
>PRK06436 glycerate dehydrogenase; Provisional
Probab=99.92 E-value=1.2e-25 Score=203.95 Aligned_cols=167 Identities=13% Similarity=0.157 Sum_probs=142.4
Q ss_pred eeeeccccccccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCChh
Q 018213 3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIM 82 (359)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~i 82 (359)
+++|+++. ..+++|++++++|++.|+++.+.+.+++|.|..... +. +.+++|||||+|+|
T Consensus 74 ~~~~~g~~--~~~VAE~~l~l~L~l~R~i~~~~~~~~~g~w~~~~~-----~~-------------L~gktvgIiG~G~I 133 (303)
T PRK06436 74 LCSNAGAY--SISVAEHAFALLLAWAKNICENNYNMKNGNFKQSPT-----KL-------------LYNKSLGILGYGGI 133 (303)
T ss_pred EEEcCCCC--cHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCCCCC-----CC-------------CCCCEEEEECcCHH
Confidence 34555333 249999999999999999999999999999974311 11 88899999999999
Q ss_pred hHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCc-cCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEE
Q 018213 83 GTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK-YQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY 161 (359)
Q Consensus 83 G~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~-~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~v 161 (359)
|+.+|++++.+|++|.+|||+... .+.. ...++++++++||+|++|+|.+++|++++ +++.+..|++|+++
T Consensus 134 G~~vA~~l~afG~~V~~~~r~~~~------~~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~li--~~~~l~~mk~ga~l 205 (303)
T PRK06436 134 GRRVALLAKAFGMNIYAYTRSYVN------DGISSIYMEPEDIMKKSDFVLISLPLTDETRGMI--NSKMLSLFRKGLAI 205 (303)
T ss_pred HHHHHHHHHHCCCEEEEECCCCcc------cCcccccCCHHHHHhhCCEEEECCCCCchhhcCc--CHHHHhcCCCCeEE
Confidence 999999999999999999997532 1232 24689999999999999999999999999 78899999999999
Q ss_pred EeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCcc
Q 018213 162 VDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP 197 (359)
Q Consensus 162 i~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 197 (359)
||++|+.++++++|.++|+++.+.....+++..+|.
T Consensus 206 IN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP~ 241 (303)
T PRK06436 206 INVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPI 241 (303)
T ss_pred EECCCccccCHHHHHHHHHcCCceEEEEccCCCCCC
Confidence 999999999999999999988788777888877653
No 39
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=99.92 E-value=6.1e-26 Score=191.80 Aligned_cols=160 Identities=16% Similarity=0.196 Sum_probs=130.6
Q ss_pred cccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCChhhHHHHHHHHHCCCcEEEE
Q 018213 21 MSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVW 100 (359)
Q Consensus 21 ~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~ 100 (359)
++++|+++|++..+.+.++.+.|...... . ..++.+++|||||+|+||+.+|++++.+|++|++|
T Consensus 1 i~l~L~~~R~~~~~~~~~~~~~W~~~~~~--~-------------~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~ 65 (178)
T PF02826_consen 1 IALMLALLRRLPEYHEAQRNGEWASRERF--P-------------GRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGY 65 (178)
T ss_dssp HHHHHHHHTTHHHHHHHHHTTBHHHHTTT--T-------------BS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEE
T ss_pred ChHHHHHHhCHHHHHHHHHcCCCCCCcCC--C-------------ccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEe
Confidence 35778889999999999999999111100 0 11288899999999999999999999999999999
Q ss_pred cCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHH
Q 018213 101 NRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIK 180 (359)
Q Consensus 101 d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~ 180 (359)
||+..........++ ...+++|++++||+|++++|.+++|++++ +++.+..||+|+++||++|+..++++++.++++
T Consensus 66 d~~~~~~~~~~~~~~-~~~~l~ell~~aDiv~~~~plt~~T~~li--~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~ 142 (178)
T PF02826_consen 66 DRSPKPEEGADEFGV-EYVSLDELLAQADIVSLHLPLTPETRGLI--NAEFLAKMKPGAVLVNVARGELVDEDALLDALE 142 (178)
T ss_dssp ESSCHHHHHHHHTTE-EESSHHHHHHH-SEEEE-SSSSTTTTTSB--SHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHH
T ss_pred cccCChhhhcccccc-eeeehhhhcchhhhhhhhhccccccceee--eeeeeeccccceEEEeccchhhhhhhHHHHHHh
Confidence 998865443445555 44599999999999999999999999999 899999999999999999999999999999999
Q ss_pred hcCCeeecCCCCCCCccc
Q 018213 181 ATGASFLEAPVSGSKKPA 198 (359)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~ 198 (359)
++.+.....+++..++..
T Consensus 143 ~g~i~ga~lDV~~~EP~~ 160 (178)
T PF02826_consen 143 SGKIAGAALDVFEPEPLP 160 (178)
T ss_dssp TTSEEEEEESS-SSSSSS
T ss_pred hccCceEEEECCCCCCCC
Confidence 998888888888776543
No 40
>PLN02928 oxidoreductase family protein
Probab=99.91 E-value=2.6e-25 Score=206.14 Aligned_cols=174 Identities=13% Similarity=0.035 Sum_probs=144.8
Q ss_pred eeeeccccc-cccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCCh
Q 018213 3 LLVKSSYSH-RFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI 81 (359)
Q Consensus 3 ~~~~~~~~~-~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~ 81 (359)
+...|+|++ ...+++|++++++|+++|++..+.+.++.+.|... .. +. +.+++|||||+|+
T Consensus 108 v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~~--~~---~~-------------l~gktvGIiG~G~ 169 (347)
T PLN02928 108 VARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLGEP--IG---DT-------------LFGKTVFILGYGA 169 (347)
T ss_pred EEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCcccc--cc---cC-------------CCCCEEEEECCCH
Confidence 444566643 55689999999999999999999999999988631 11 11 7889999999999
Q ss_pred hhHHHHHHHHHCCCcEEEEcCCccchhHH------------HhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccc
Q 018213 82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPL------------ISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (359)
Q Consensus 82 iG~~ia~~l~~~g~~V~~~d~~~~~~~~~------------~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~ 149 (359)
||+.+|++++.+|++|++|||+....... ..... ...++++++++||+|++|+|.+++|++++ ++
T Consensus 170 IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~ell~~aDiVvl~lPlt~~T~~li--~~ 246 (347)
T PLN02928 170 IGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKG-GHEDIYEFAGEADIVVLCCTLTKETAGIV--ND 246 (347)
T ss_pred HHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccC-cccCHHHHHhhCCEEEECCCCChHhhccc--CH
Confidence 99999999999999999999974321111 00112 34589999999999999999999999999 88
Q ss_pred cccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCcc
Q 018213 150 GAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP 197 (359)
Q Consensus 150 ~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 197 (359)
+.++.||+|+++||++||..+++++|.++|+++.+.....+++..++.
T Consensus 247 ~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~ 294 (347)
T PLN02928 247 EFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPF 294 (347)
T ss_pred HHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCC
Confidence 999999999999999999999999999999999888888888877664
No 41
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=99.91 E-value=3.3e-25 Score=202.41 Aligned_cols=163 Identities=13% Similarity=0.135 Sum_probs=139.2
Q ss_pred ccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCChhhHHHHHHHHH
Q 018213 13 FLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIMGTPMAQNLLK 92 (359)
Q Consensus 13 ~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~iG~~ia~~l~~ 92 (359)
..+++|++++++|+++|++..+.+.++.+.|...... . +++++|||||+|+||+.+|++|..
T Consensus 96 ~~~vAE~~l~~~L~~~r~~~~~~~~~~~~~w~~~~~~-----~-------------l~g~tvgIvG~G~IG~~vA~~l~a 157 (312)
T PRK15469 96 GEQMQEYAVSQVLHWFRRFDDYQALQNSSHWQPLPEY-----H-------------REDFTIGILGAGVLGSKVAQSLQT 157 (312)
T ss_pred cHHHHHHHHHHHHHHHcChHHHHHHHHhCCcCCCCCC-----C-------------cCCCEEEEECCCHHHHHHHHHHHH
Confidence 3478999999999999999999988999999742211 1 677999999999999999999999
Q ss_pred CCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHH
Q 018213 93 AGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTS 172 (359)
Q Consensus 93 ~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~ 172 (359)
+|++|.+|+++++....... .....++++++++||+|++|+|.+++|++++ +++.+..|++|+++||++||..+++
T Consensus 158 fG~~V~~~~~~~~~~~~~~~--~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li--~~~~l~~mk~ga~lIN~aRG~vVde 233 (312)
T PRK15469 158 WGFPLRCWSRSRKSWPGVQS--FAGREELSAFLSQTRVLINLLPNTPETVGII--NQQLLEQLPDGAYLLNLARGVHVVE 233 (312)
T ss_pred CCCEEEEEeCCCCCCCCcee--ecccccHHHHHhcCCEEEECCCCCHHHHHHh--HHHHHhcCCCCcEEEECCCccccCH
Confidence 99999999987654321111 1124588999999999999999999999999 7889999999999999999999999
Q ss_pred HHHHHHHHhcCCeeecCCCCCCCcc
Q 018213 173 KLINGHIKATGASFLEAPVSGSKKP 197 (359)
Q Consensus 173 ~~l~~~l~~~~~~~~~~~~~~~~~~ 197 (359)
++|.++|+++.+.....+++..++.
T Consensus 234 ~aL~~aL~~g~i~gaalDVf~~EPl 258 (312)
T PRK15469 234 DDLLAALDSGKVKGAMLDVFSREPL 258 (312)
T ss_pred HHHHHHHhcCCeeeEEecCCCCCCC
Confidence 9999999999888888888877654
No 42
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=99.91 E-value=3.1e-25 Score=204.27 Aligned_cols=173 Identities=12% Similarity=0.100 Sum_probs=147.1
Q ss_pred eeeeeccccccccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCCh
Q 018213 2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI 81 (359)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~ 81 (359)
.+..+|+|++. +++|++++++|++.|++..+.+.++.+.|.+.... ..+ ++.+++|||||+|.
T Consensus 94 ~v~n~~~~~~~--~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~~--~~~-------------~l~g~~VgIIG~G~ 156 (330)
T PRK12480 94 VISNVPSYSPE--TIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEI--MSK-------------PVKNMTVAIIGTGR 156 (330)
T ss_pred EEEeCCCCChH--HHHHHHHHHHHHHHHhHHHHHHHHHhCCccccccc--Ccc-------------ccCCCEEEEECCCH
Confidence 45666899888 88999999999999999999998888877432111 001 27889999999999
Q ss_pred hhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEE
Q 018213 82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGY 161 (359)
Q Consensus 82 iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~v 161 (359)
||+.+|+.|+.+|++|.+||++++..... .....++++++++||+|++|+|.++++.+++ +++.++.|++|+++
T Consensus 157 IG~~vA~~L~~~G~~V~~~d~~~~~~~~~----~~~~~~l~ell~~aDiVil~lP~t~~t~~li--~~~~l~~mk~gavl 230 (330)
T PRK12480 157 IGAATAKIYAGFGATITAYDAYPNKDLDF----LTYKDSVKEAIKDADIISLHVPANKESYHLF--DKAMFDHVKKGAIL 230 (330)
T ss_pred HHHHHHHHHHhCCCEEEEEeCChhHhhhh----hhccCCHHHHHhcCCEEEEeCCCcHHHHHHH--hHHHHhcCCCCcEE
Confidence 99999999999999999999987543221 3345689999999999999999999999999 68899999999999
Q ss_pred EeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCcc
Q 018213 162 VDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP 197 (359)
Q Consensus 162 i~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 197 (359)
||++||..+++++|.++|+++.+.....+++..++.
T Consensus 231 IN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~ 266 (330)
T PRK12480 231 VNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEAA 266 (330)
T ss_pred EEcCCccccCHHHHHHHHHcCCeeEEEEeccCCCCc
Confidence 999999999999999999999888888888887763
No 43
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=99.91 E-value=3.9e-25 Score=215.99 Aligned_cols=174 Identities=13% Similarity=0.113 Sum_probs=148.5
Q ss_pred eeeeccccccccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCChh
Q 018213 3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIM 82 (359)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~i 82 (359)
+...|+|... +++|++++++|+++|+++.+.+.++.|.|......+ . ++.+++|||||+|+|
T Consensus 88 V~n~pg~~~~--~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~g---~-------------~l~gktvgIiG~G~I 149 (525)
T TIGR01327 88 VVNAPTGNTI--SAAEHALAMLLAAARNIPQADASLKEGEWDRKAFMG---T-------------ELYGKTLGVIGLGRI 149 (525)
T ss_pred EEeCCCcChH--HHHHHHHHHHHHHhcCHHHHHHHHHcCCccccccCc---c-------------ccCCCEEEEECCCHH
Confidence 4445777665 899999999999999999999999999997432111 1 288899999999999
Q ss_pred hHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEEE
Q 018213 83 GTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV 162 (359)
Q Consensus 83 G~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi 162 (359)
|+.+|++|..+|++|.+||++... +...+.++...+++++++++||+|++|+|.+++|++++ +++.++.||+|+++|
T Consensus 150 G~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li--~~~~l~~mk~ga~lI 226 (525)
T TIGR01327 150 GSIVAKRAKAFGMKVLAYDPYISP-ERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLI--GAEELAKMKKGVIIV 226 (525)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCc--CHHHHhcCCCCeEEE
Confidence 999999999999999999986432 33344566666789999999999999999999999999 788999999999999
Q ss_pred eccCCChHHHHHHHHHHHhcCCeeecCCCCCCCcc
Q 018213 163 DVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP 197 (359)
Q Consensus 163 ~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 197 (359)
|++||..+++++|.++|+++.+.....+++..+|.
T Consensus 227 N~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~ 261 (525)
T TIGR01327 227 NCARGGIIDEAALYEALEEGHVRAAALDVFEKEPP 261 (525)
T ss_pred EcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCC
Confidence 99999999999999999999988888888877663
No 44
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=99.91 E-value=2.2e-22 Score=189.27 Aligned_cols=249 Identities=16% Similarity=0.095 Sum_probs=185.5
Q ss_pred CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHh----------------CCCcc--CCCHHHHhhcCCEEEE
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS----------------LGAKY--QPSPDEVAASCDVTFA 133 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~----------------~g~~~--~~~~~~~~~~aDivi~ 133 (359)
|+|+|||+|.||..+|..++. ||+|++||+++++.+.+.+ .+... ..+..+++.++|+|++
T Consensus 1 mkI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii 79 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVII 79 (388)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEE
Confidence 579999999999999987775 9999999999988877654 22223 2346677889999999
Q ss_pred eeCCh----------hHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCC---ccccC
Q 018213 134 MLADP----------ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSK---KPAED 200 (359)
Q Consensus 134 ~~p~~----------~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~---~~~~~ 200 (359)
|+|.+ ..++.++ +++.. +++|.++|+.|+.+|...+.+.+.+.+.++.+ .|.+-.+ .....
T Consensus 80 ~Vpt~~~~k~~~~dl~~v~~v~---~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~~v~~--~PE~l~~G~a~~d~~ 153 (388)
T PRK15057 80 ATPTDYDPKTNYFNTSSVESVI---KDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTENIIF--SPEFLREGKALYDNL 153 (388)
T ss_pred eCCCCCccCCCCcChHHHHHHH---HHHHh-cCCCCEEEEeeecCCchHHHHHHHhhcCcEEE--CcccccCCccccccc
Confidence 99976 4556666 66665 68999999999999999999998887665544 3332211 11122
Q ss_pred CceEEEecCCHHHHHHHHHHHHH--hCCCeE-EeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 018213 201 GQLIFLAAGDKSLYNTVAPLLDI--MGKSRF-YLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVS 277 (359)
Q Consensus 201 ~~~~~~~~g~~~~~~~v~~ll~~--lg~~~~-~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~ 277 (359)
.+..+++|++++..+++.+++.. ++..+. ++++++.++..|++.|.+.+..++.++|+..+|++.|+|..++.+.+.
T Consensus 154 ~p~rvv~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~~GiD~~eV~~a~~ 233 (388)
T PRK15057 154 HPSRIVIGERSERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLGLNTRQIIEGVC 233 (388)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHhc
Confidence 33367788888888888888854 554444 688999999999999999999999999999999999999999999988
Q ss_pred hccccchhhhhcccccccCCCCCCcchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 018213 278 QGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVA 338 (359)
Q Consensus 278 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a 338 (359)
.....++. .+ ..-+|+....+.||...+...+ .+++.++++++.++-+..
T Consensus 234 ~d~ri~~~-------~l--~pG~G~GG~ClpkD~~~L~~~~--~~~~~~l~~~~~~~N~~~ 283 (388)
T PRK15057 234 LDPRIGNH-------YN--NPSFGYGGYCLPKDTKQLLANY--QSVPNNLISAIVDANRTR 283 (388)
T ss_pred CCCCCCCc-------cC--CCCCCCCCcChhhhHHHHHHhc--cCCCcHHHHHHHHHHHHh
Confidence 64322211 11 0112344556788887775544 567888888887665544
No 45
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=99.90 E-value=1.5e-24 Score=211.85 Aligned_cols=173 Identities=14% Similarity=0.166 Sum_probs=147.3
Q ss_pred eeeeccccccccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCChh
Q 018213 3 LLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIM 82 (359)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~i 82 (359)
+...|+|+.. +++|++++++|+++|+++.+.+.++.|.|....... . ++.+++|||||+|+|
T Consensus 90 V~n~p~~~~~--~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~~~g---~-------------~l~gktvgIiG~G~I 151 (526)
T PRK13581 90 VVNAPTGNTI--SAAEHTIALMLALARNIPQAHASLKAGKWERKKFMG---V-------------ELYGKTLGIIGLGRI 151 (526)
T ss_pred EEeCCCCChH--HHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccCccc---c-------------ccCCCEEEEECCCHH
Confidence 4445677665 899999999999999999999999999997421111 1 278899999999999
Q ss_pred hHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEEE
Q 018213 83 GTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV 162 (359)
Q Consensus 83 G~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi 162 (359)
|+.+|++++.+|++|.+|||+... +.....++... ++++++++||+|++|+|.+++|++++ +++.++.||+|+++|
T Consensus 152 G~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g~~~~-~l~ell~~aDiV~l~lP~t~~t~~li--~~~~l~~mk~ga~lI 227 (526)
T PRK13581 152 GSEVAKRAKAFGMKVIAYDPYISP-ERAAQLGVELV-SLDELLARADFITLHTPLTPETRGLI--GAEELAKMKPGVRII 227 (526)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCCEEE-cHHHHHhhCCEEEEccCCChHhhcCc--CHHHHhcCCCCeEEE
Confidence 999999999999999999996532 33344566665 89999999999999999999999999 788999999999999
Q ss_pred eccCCChHHHHHHHHHHHhcCCeeecCCCCCCCcc
Q 018213 163 DVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP 197 (359)
Q Consensus 163 ~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 197 (359)
|++|+..+++++|.++|+++.+.....+++..+|.
T Consensus 228 N~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~ 262 (526)
T PRK13581 228 NCARGGIIDEAALAEALKSGKVAGAALDVFEKEPP 262 (526)
T ss_pred ECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCC
Confidence 99999999999999999999888777778776653
No 46
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=99.90 E-value=4.9e-24 Score=191.85 Aligned_cols=167 Identities=16% Similarity=0.111 Sum_probs=145.7
Q ss_pred ccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCChhhHHHHHHHHH
Q 018213 13 FLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIMGTPMAQNLLK 92 (359)
Q Consensus 13 ~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~iG~~ia~~l~~ 92 (359)
..++|+++++++|..+|++..++++++.|.|.+....++.. .+.++||||+|+|+||+.+|++|..
T Consensus 118 ~~~vAd~~~~lil~~~R~~~~g~~~~~~g~w~~~~~~~~g~--------------~~~gK~vgilG~G~IG~~ia~rL~~ 183 (336)
T KOG0069|consen 118 TDDVADLAVSLLLALLRRFSEGNEMVRNGGWGWAGGWPLGY--------------DLEGKTVGILGLGRIGKAIAKRLKP 183 (336)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhhhhhhcCCccccCCccccc--------------cccCCEEEEecCcHHHHHHHHhhhh
Confidence 34889999999999999999999999999995444333321 1788999999999999999999999
Q ss_pred CCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHH
Q 018213 93 AGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTS 172 (359)
Q Consensus 93 ~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~ 172 (359)
||+.+.+++|++...+...+.+.. ..+.++++.++|+|++|+|++++|++++ |++++.+|++|.++||++||...++
T Consensus 184 Fg~~i~y~~r~~~~~~~~~~~~~~-~~d~~~~~~~sD~ivv~~pLt~~T~~li--Nk~~~~~mk~g~vlVN~aRG~iide 260 (336)
T KOG0069|consen 184 FGCVILYHSRTQLPPEEAYEYYAE-FVDIEELLANSDVIVVNCPLTKETRHLI--NKKFIEKMKDGAVLVNTARGAIIDE 260 (336)
T ss_pred ccceeeeecccCCchhhHHHhccc-ccCHHHHHhhCCEEEEecCCCHHHHHHh--hHHHHHhcCCCeEEEeccccccccH
Confidence 997788888887766655555555 4589999999999999999999999999 8999999999999999999999999
Q ss_pred HHHHHHHHhcCCeeecCCCCCCCc
Q 018213 173 KLINGHIKATGASFLEAPVSGSKK 196 (359)
Q Consensus 173 ~~l~~~l~~~~~~~~~~~~~~~~~ 196 (359)
+++.++|+++.+.-.+.+++..++
T Consensus 261 ~~l~eaL~sG~i~~aGlDVf~~EP 284 (336)
T KOG0069|consen 261 EALVEALKSGKIAGAGLDVFEPEP 284 (336)
T ss_pred HHHHHHHhcCCcccccccccCCCC
Confidence 999999999988888888887776
No 47
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.90 E-value=4.1e-22 Score=178.77 Aligned_cols=256 Identities=21% Similarity=0.279 Sum_probs=209.7
Q ss_pred CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC-----CCccCCCHHHHh---hcCCEEEEeeCChhHHHH
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-----GAKYQPSPDEVA---ASCDVTFAMLADPESAMD 143 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-----g~~~~~~~~~~~---~~aDivi~~~p~~~~~~~ 143 (359)
..||+||+|.||+.+|..+...|++|.+|+|++++.+.+.+. .+..+.+++|++ +...-|++.+.....+..
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD~ 83 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVDA 83 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHHH
Confidence 569999999999999999999999999999999998887654 345567888775 457788888855566688
Q ss_pred HhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHHHH
Q 018213 144 VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDI 223 (359)
Q Consensus 144 ~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~ 223 (359)
++ +++++.|.+|.++||-++..-.|+..-.+.|.+.|+.|++..++|++..+..|+. ++.||++++.+.+.++|..
T Consensus 84 ~I---~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GPS-iMpGG~~eay~~v~pil~~ 159 (473)
T COG0362 84 VI---EQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGPS-IMPGGQKEAYELVAPILTK 159 (473)
T ss_pred HH---HHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCCC-cCCCCCHHHHHHHHHHHHH
Confidence 88 8899999999999999999999999999999999999999999999999998887 5799999999999999998
Q ss_pred hCC------CeEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHh---hccccchhhhhccccc
Q 018213 224 MGK------SRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEK-VGLDPNVLVEVVS---QGAISAPMYSLKGPSM 293 (359)
Q Consensus 224 lg~------~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~-~Gi~~~~~~~~~~---~~~~~s~~~~~~~~~~ 293 (359)
+.. ++.++|+-|.++..|+++|.+.+.-+++++|++.+++. .|++.+++.++.. .+...|.+.+-+..-+
T Consensus 160 IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~ei~~vF~~WN~geL~SYLIeIT~~IL 239 (473)
T COG0362 160 IAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEEIAEVFEEWNKGELDSYLIEITADIL 239 (473)
T ss_pred HHhhcCCCCceeeECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhccCcchHHHHHHHHHHH
Confidence 853 36788999999999999999999999999999999998 8999888877765 4566677766555444
Q ss_pred ccCCCCCCcc-hhHHH-----HHH-HHHHHHHHhcCCCchHHHHH
Q 018213 294 IESLYPTAFP-LKHQQ-----KDL-RLALGLAESVSQSTPIAAAA 331 (359)
Q Consensus 294 ~~~~~~~~~~-~~~~~-----kd~-~~~~~~a~~~g~~~p~~~~~ 331 (359)
...|-..+.. ++..+ |.+ ++....|-+.|+|++.+...
T Consensus 240 ~~kD~~~~kplvd~ILD~AgQKGTGkWt~~~AldlGvP~t~I~ea 284 (473)
T COG0362 240 RKKDEEGGKPLVDKILDKAGQKGTGKWTVISALDLGVPLTLITEA 284 (473)
T ss_pred hhcCcccCCchHHHHHHHhcCCCcchhhHHHHHHcCCCcHHHHHH
Confidence 4444443322 22221 111 56677788899999876544
No 48
>PRK08605 D-lactate dehydrogenase; Validated
Probab=99.89 E-value=8.1e-24 Score=195.57 Aligned_cols=173 Identities=11% Similarity=0.092 Sum_probs=144.8
Q ss_pred eeeeeccccccccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCCh
Q 018213 2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI 81 (359)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~ 81 (359)
.+...|+|+.. +++|++++++|+++|++..+.+.++.+.|.+.... . .+ ++.+++|||||+|+
T Consensus 94 ~v~n~~~~~~~--~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~-~-~~-------------~l~g~~VgIIG~G~ 156 (332)
T PRK08605 94 IISNVPSYSPE--SIAEFTVTQAINLVRHFNQIQTKVREHDFRWEPPI-L-SR-------------SIKDLKVAVIGTGR 156 (332)
T ss_pred EEEeCCCCChH--HHHHHHHHHHHHHhcChHHHHHHHHhCCccccccc-c-cc-------------eeCCCEEEEECCCH
Confidence 45566888876 89999999999999999999998999988532211 0 01 28889999999999
Q ss_pred hhHHHHHHH-HHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCE
Q 018213 82 MGTPMAQNL-LKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKG 160 (359)
Q Consensus 82 iG~~ia~~l-~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~ 160 (359)
||+.+|+.| ..+|++|++||+++... . ...+....++++++++||+|++|+|.+..++.++ +.+.++.|++|++
T Consensus 157 IG~~vA~~L~~~~g~~V~~~d~~~~~~--~-~~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li--~~~~l~~mk~gai 231 (332)
T PRK08605 157 IGLAVAKIFAKGYGSDVVAYDPFPNAK--A-ATYVDYKDTIEEAVEGADIVTLHMPATKYNHYLF--NADLFKHFKKGAV 231 (332)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCccHh--H-HhhccccCCHHHHHHhCCEEEEeCCCCcchhhhc--CHHHHhcCCCCcE
Confidence 999999999 67899999999986532 1 2234555689999999999999999999999988 6778899999999
Q ss_pred EEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCc
Q 018213 161 YVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKK 196 (359)
Q Consensus 161 vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 196 (359)
+||++||..++++++.++++++.+.....+++..++
T Consensus 232 lIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~Ep 267 (332)
T PRK08605 232 FVNCARGSLVDTKALLDALDNGLIKGAALDTYEFER 267 (332)
T ss_pred EEECCCCcccCHHHHHHHHHhCCeeEEEEecccCCC
Confidence 999999999999999999999988888888887664
No 49
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=99.87 E-value=2.7e-21 Score=180.78 Aligned_cols=259 Identities=20% Similarity=0.260 Sum_probs=180.1
Q ss_pred CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCc-----------------cCCCHHHHhhcCCEEEEe
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK-----------------YQPSPDEVAASCDVTFAM 134 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~-----------------~~~~~~~~~~~aDivi~~ 134 (359)
|+|+|||+|.||..+|..|.+.|++|++++|++. .+.+.+.|.. ...+. +.+..+|+|+++
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil~ 80 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLVT 80 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEEE
Confidence 7899999999999999999999999999999653 3445544432 12344 556789999999
Q ss_pred eCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecC--C---CCCCCcc---ccCCceEEE
Q 018213 135 LADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA--P---VSGSKKP---AEDGQLIFL 206 (359)
Q Consensus 135 ~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~--~---~~~~~~~---~~~~~~~~~ 206 (359)
+| +.++..++ +.+.+.++++++|+++.++.. ..+.+.+.+... .++.+ + +..++.. ...+...+
T Consensus 81 vk-~~~~~~~~---~~l~~~~~~~~iii~~~nG~~-~~~~l~~~~~~~--~~~~g~~~~~~~~~~pg~~~~~~~g~l~~- 152 (341)
T PRK08229 81 VK-SAATADAA---AALAGHARPGAVVVSFQNGVR-NADVLRAALPGA--TVLAGMVPFNVISRGPGAFHQGTSGALAI- 152 (341)
T ss_pred ec-CcchHHHH---HHHHhhCCCCCEEEEeCCCCC-cHHHHHHhCCCC--cEEEEEEEEEEEecCCceEEecCCCceEe-
Confidence 96 56777887 777777888999988866533 334566665432 22221 1 1211111 12333322
Q ss_pred ecCCHHHHHHHHHHHHHhCCCeEEeCccChHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHcC
Q 018213 207 AAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSM--------------------MATFSEGLLHSEKVG 266 (359)
Q Consensus 207 ~~g~~~~~~~v~~ll~~lg~~~~~~g~~~~~~~~kl~~n~~~~~~--------------------~~~~~Ea~~l~~~~G 266 (359)
+ +.+.++++.++|+..+.++.+.++++...|.|++.|.+.... ..++.|++.++++.|
T Consensus 153 -~-~~~~~~~~~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~E~~~va~a~G 230 (341)
T PRK08229 153 -E-ASPALRPFAAAFARAGLPLVTHEDMRAVQWAKLLLNLNNAVNALSGLPLKEELAQRSYRRCLALAQREALRVLKAAG 230 (341)
T ss_pred -c-CCchHHHHHHHHHhcCCCceecchhHHHHHHHHHHHhccHHHHHhCCchHHHhcCchHHHHHHHHHHHHHHHHHHcC
Confidence 2 335578899999999999999999999999999999643322 377899999999999
Q ss_pred CCHHHHHHHHhhc-----cccchhhhhcccccccCCCCCCcchhHHHHHHH------------HHHHHHHhcCCCchHHH
Q 018213 267 LDPNVLVEVVSQG-----AISAPMYSLKGPSMIESLYPTAFPLKHQQKDLR------------LALGLAESVSQSTPIAA 329 (359)
Q Consensus 267 i~~~~~~~~~~~~-----~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~------------~~~~~a~~~g~~~p~~~ 329 (359)
++++.+.++..+. ...++++....+.+...++.. ...+.+|+. .+++.++++|+++|+++
T Consensus 231 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~Sm~~D~~~~r~tEi~~i~G~i~~~a~~~gv~~P~~~ 307 (341)
T PRK08229 231 IRPARLTPLPPAWIPRLLRLPDPLFRRLAGRMLAIDPLA---RSSMSDDLAAGRATEIDWINGEIVRLAGRLGAPAPVNA 307 (341)
T ss_pred CCccccCCCChhhhhhhhcCChHHHHHHHHHhhccCCcc---CchHHHHHHcCCcchHHHHhhHHHHHHHHcCCCCcHHH
Confidence 9876543332222 123344443333333333321 245777776 79999999999999999
Q ss_pred HHHHHHHHHHHCCCCC
Q 018213 330 AANELYKVAKSHGLSD 345 (359)
Q Consensus 330 ~~~~~~~~a~~~g~~~ 345 (359)
.++++++.+.+.|...
T Consensus 308 ~~~~~~~~~~~~~~~~ 323 (341)
T PRK08229 308 RLCALVHEAERAGARP 323 (341)
T ss_pred HHHHHHHHHHhCCCcC
Confidence 9999999999887543
No 50
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.87 E-value=1.9e-20 Score=169.00 Aligned_cols=250 Identities=18% Similarity=0.201 Sum_probs=176.4
Q ss_pred CeEEEEcCChhhHHHHHHHHHCCC----cEEEE-cCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhc
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKAGC----DVTVW-NRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 146 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~g~----~V~~~-d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~ 146 (359)
|||+|||+|+||.++++.|.+.|+ +|++| +|++++.+.+.+.|+....+..++++++|+||+|+| +..++.++
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~~vl- 78 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQVVKDVL- 78 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHHHHHHH-
Confidence 679999999999999999999998 89998 999888777777888888889999999999999995 88899998
Q ss_pred ccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec-CCCCCCCccccCCceEEEec--CCHHHHHHHHHHHHH
Q 018213 147 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPAEDGQLIFLAA--GDKSLYNTVAPLLDI 223 (359)
Q Consensus 147 ~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--g~~~~~~~v~~ll~~ 223 (359)
.++.+.+++++++|++..+.. .+.+.+.+... .++. .|..+.... .+...+..+ ++++.++.++++|+.
T Consensus 79 --~~l~~~~~~~~~iIs~~~g~~--~~~l~~~~~~~--~vvr~mP~~~~~~~--~~~~~l~~~~~~~~~~~~~v~~l~~~ 150 (266)
T PLN02688 79 --TELRPLLSKDKLLVSVAAGIT--LADLQEWAGGR--RVVRVMPNTPCLVG--EAASVMSLGPAATADDRDLVATLFGA 150 (266)
T ss_pred --HHHHhhcCCCCEEEEecCCCc--HHHHHHHcCCC--CEEEECCCcHHHHh--CceEEEEeCCCCCHHHHHHHHHHHHh
Confidence 677777888999997755533 33444444322 4553 554433222 222222222 378899999999999
Q ss_pred hCCCeEEeCccChHHHHHH--HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhh-hcc--cccc-cCC
Q 018213 224 MGKSRFYLGDVGNGAAMKL--VVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYS-LKG--PSMI-ESL 297 (359)
Q Consensus 224 lg~~~~~~g~~~~~~~~kl--~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~-~~~--~~~~-~~~ 297 (359)
+|. ++++++.......-+ ....+.+.++.++.|+ +.+.|++++++.+++..+...++.+- ... +..+ ..-
T Consensus 151 ~G~-~~~~~e~~~d~~~~~~g~g~a~~~~~~~a~~ea---~~~~Gl~~~~a~~~~~~~~~gs~~l~~~~~~~~~~l~~~v 226 (266)
T PLN02688 151 VGK-IWVVDEKLLDAVTGLSGSGPAYIFLAIEALADG---GVAAGLPRDVALSLAAQTVLGAAKMVLETGKHPGQLKDMV 226 (266)
T ss_pred CCC-EEEeCHHHcchhHhhhcCHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhC
Confidence 999 888765221222211 2234456666777777 68899999999999998766555432 111 1111 112
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCC
Q 018213 298 YPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHG 342 (359)
Q Consensus 298 ~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g 342 (359)
..|+.+ +...++..++.|++..+.+++.+.++++.+.+
T Consensus 227 ~spgG~-------t~~~l~~l~~~g~~~~~~~a~~~~~~r~~~~~ 264 (266)
T PLN02688 227 TSPGGT-------TIAGVHELEKGGFRAALMNAVVAAAKRSRELS 264 (266)
T ss_pred CCCchH-------HHHHHHHHHHCChHHHHHHHHHHHHHHHHHhc
Confidence 233332 34456778889999999999999999998764
No 51
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.86 E-value=1.7e-20 Score=168.07 Aligned_cols=261 Identities=17% Similarity=0.199 Sum_probs=200.4
Q ss_pred CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC--------------CCccCCCHHHHhhcCCEEEEeeCC
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--------------GAKYQPSPDEVAASCDVTFAMLAD 137 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~--------------g~~~~~~~~~~~~~aDivi~~~p~ 137 (359)
++|+|||.|.+|+++|..|+.+||+|.+|.|+++..+++... ++..+.++.++++++|+|++++|
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avP- 80 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVP- 80 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECC-
Confidence 789999999999999999999999999999998877666542 23457789999999999999998
Q ss_pred hhHHHHHhcccccccccCCCCCEEEeccCCChH-H----HHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHH
Q 018213 138 PESAMDVACGKHGAASGMGPGKGYVDVSTVDGD-T----SKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKS 212 (359)
Q Consensus 138 ~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~-~----~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 212 (359)
+..++.++ +++...++++..+++++-|-.. + .+.+.+.+....+.++..|.+..+......+.+.+.+.|.+
T Consensus 81 s~~~r~v~---~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs~A~EVa~g~pta~~vas~d~~ 157 (329)
T COG0240 81 SQALREVL---RQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPSFAKEVAQGLPTAVVVASNDQE 157 (329)
T ss_pred hHHHHHHH---HHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEEEEECccHHHHHhcCCCcEEEEecCCHH
Confidence 78999998 7777788999999999877432 2 33444444444578888999988887777778888888999
Q ss_pred HHHHHHHHHHHhCCCeEEeCc---cChHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 018213 213 LYNTVAPLLDIMGKSRFYLGD---VGNGAAMKLV--------------VNMIMGSMMATFSEGLLHSEKVGLDPNVLVEV 275 (359)
Q Consensus 213 ~~~~v~~ll~~lg~~~~~~g~---~~~~~~~kl~--------------~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~ 275 (359)
..++++.+|+.--++++...| ...+.++|-+ .|.-.+.+..++.|+.++....|-.++++..+
T Consensus 158 ~a~~v~~~f~~~~Frvy~~~Dv~GveigGAlKNViAIA~Gi~dGlg~G~NakaalitrGL~Em~rlg~~lG~~~~T~~gL 237 (329)
T COG0240 158 AAEKVQALFSSPYFRVYTSTDVIGVEIGGALKNVIAIAAGIADGLGLGDNAKAALITRGLAEMTRLGVALGAKPETFMGL 237 (329)
T ss_pred HHHHHHHHhCCCcEEEEecCchhhhHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHhHHHHHHHHHHHhCCCcchhccc
Confidence 999999999987788877766 3334444433 36666778899999999999999999888776
Q ss_pred Hhhc----cccchhhhhc--ccccccCCC-----CCCcchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 018213 276 VSQG----AISAPMYSLK--GPSMIESLY-----PTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYK 336 (359)
Q Consensus 276 ~~~~----~~~s~~~~~~--~~~~~~~~~-----~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~ 336 (359)
...+ ++.|+..+++ +..+.++.- .....+.++.+....+.++++++++++|+.+++++++.
T Consensus 238 sGlGDLilTCts~~SRN~r~G~~lg~g~~~~e~l~~~g~vvEGv~t~k~v~~la~~~~i~mPI~~~Vy~vl~ 309 (329)
T COG0240 238 SGLGDLILTCTSPLSRNRRFGLLLGQGLSLDEALEEIGQVVEGVRTAKAVYELAKKLGIEMPITEAVYRVLY 309 (329)
T ss_pred ccccceeEecCCCccccHHHHHHHhCCCCHHHHHHhcCCeeecHHHHHHHHHHHHHcCCCCCHHHHHHHHHh
Confidence 6544 4455555543 222333311 01123455677789999999999999999999999885
No 52
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.85 E-value=4.9e-20 Score=179.44 Aligned_cols=198 Identities=14% Similarity=0.100 Sum_probs=153.1
Q ss_pred CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHh-------------------CC-CccCCCHHHHhhcCCEE
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-------------------LG-AKYQPSPDEVAASCDVT 131 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~-------------------~g-~~~~~~~~~~~~~aDiv 131 (359)
|+|+|||+|.||..+|..|...|++|++||+++++.+.+.+ .+ +..++++++++++||+|
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~V 84 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWI 84 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEE
Confidence 68999999999999999999999999999999877654321 12 56678898999999999
Q ss_pred EEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCC-
Q 018213 132 FAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGD- 210 (359)
Q Consensus 132 i~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~- 210 (359)
+.++|...+++..++ .++...++++.+| .+++..+. ...+.+.+...+..++.+|+... ..++++.+++++
T Consensus 85 ieavpe~~~vk~~l~--~~l~~~~~~~~iI-~SsTsgi~-~s~l~~~~~~~~r~~~~hP~nP~----~~~~Lvevv~g~~ 156 (495)
T PRK07531 85 QESVPERLDLKRRVL--AEIDAAARPDALI-GSSTSGFL-PSDLQEGMTHPERLFVAHPYNPV----YLLPLVELVGGGK 156 (495)
T ss_pred EEcCcCCHHHHHHHH--HHHHhhCCCCcEE-EEcCCCCC-HHHHHhhcCCcceEEEEecCCCc----ccCceEEEcCCCC
Confidence 999998888887664 4455556677654 44444433 33677777777777888887632 234667777774
Q ss_pred --HHHHHHHHHHHHHhCCCeEEeCccChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHhhccccchh
Q 018213 211 --KSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMAT-FSEGLLHSEKVGLDPNVLVEVVSQGAISAPM 285 (359)
Q Consensus 211 --~~~~~~v~~ll~~lg~~~~~~g~~~~~~~~kl~~n~~~~~~~~~-~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~ 285 (359)
++.++++.++++.+|.++++++. .+.|++.+.+..+ +.|++.++++.|+++++++++++.+.+.+|.
T Consensus 157 t~~e~~~~~~~~~~~lG~~~v~~~k--------~~~gfi~nrl~~a~~~EA~~L~~~g~~s~~~id~~~~~g~g~~~~ 226 (495)
T PRK07531 157 TSPETIRRAKEILREIGMKPVHIAK--------EIDAFVGDRLLEALWREALWLVKDGIATTEEIDDVIRYSFGLRWA 226 (495)
T ss_pred CCHHHHHHHHHHHHHcCCEEEeecC--------CCcchhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCcc
Confidence 79999999999999999998873 3345555555555 5999999999999999999999988777654
No 53
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=99.85 E-value=1.3e-21 Score=181.55 Aligned_cols=153 Identities=10% Similarity=0.057 Sum_probs=125.8
Q ss_pred eeeeeccccccccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCCh
Q 018213 2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI 81 (359)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~ 81 (359)
.+...|+|... +++|++++++|.+.|+. .|. +.+++|||||+|+
T Consensus 83 ~v~napg~na~--aVAE~~~~~lL~l~r~~----------g~~------------------------L~gktvGIIG~G~ 126 (378)
T PRK15438 83 GFSAAPGCNAI--AVVEYVFSSLLMLAERD----------GFS------------------------LHDRTVGIVGVGN 126 (378)
T ss_pred EEEECCCcCch--HHHHHHHHHHHHHhccC----------CCC------------------------cCCCEEEEECcCH
Confidence 34445666555 88999999999888851 111 6779999999999
Q ss_pred hhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhH----HHHHhcccccccccCCC
Q 018213 82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPES----AMDVACGKHGAASGMGP 157 (359)
Q Consensus 82 iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~----~~~~~~~~~~~~~~l~~ 157 (359)
||+.+|+++..+|++|.+||+..... ... ....++++++++||||++|+|.+++ |.+++ +++.+..|++
T Consensus 127 IG~~vA~~l~a~G~~V~~~dp~~~~~----~~~-~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li--~~~~l~~mk~ 199 (378)
T PRK15438 127 VGRRLQARLEALGIKTLLCDPPRADR----GDE-GDFRSLDELVQEADILTFHTPLFKDGPYKTLHLA--DEKLIRSLKP 199 (378)
T ss_pred HHHHHHHHHHHCCCEEEEECCccccc----ccc-cccCCHHHHHhhCCEEEEeCCCCCCccccccccc--CHHHHhcCCC
Confidence 99999999999999999999753221 111 1346899999999999999999885 99999 8899999999
Q ss_pred CCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCcc
Q 018213 158 GKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP 197 (359)
Q Consensus 158 ~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 197 (359)
|+++||++||..+++++|.++|+++.+.....+++..+|.
T Consensus 200 gailIN~aRG~vVDe~AL~~aL~~g~~~ga~LDV~e~EP~ 239 (378)
T PRK15438 200 GAILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEPE 239 (378)
T ss_pred CcEEEECCCchhcCHHHHHHHHHhCCCcEEEEecCCCCCC
Confidence 9999999999999999999999998877777777776653
No 54
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.85 E-value=6.7e-20 Score=166.29 Aligned_cols=250 Identities=15% Similarity=0.205 Sum_probs=170.0
Q ss_pred CCeEEEEcCChhhHHHHHHHHHCC----CcEEEEcCCcc-chhHHHh-CCCccCCCHHHHhhcCCEEEEeeCChhHHHHH
Q 018213 71 PGRIGFLGMGIMGTPMAQNLLKAG----CDVTVWNRTKS-KCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADPESAMDV 144 (359)
Q Consensus 71 ~~~igiiG~G~iG~~ia~~l~~~g----~~V~~~d~~~~-~~~~~~~-~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~ 144 (359)
.|+|+|||+|+||.++++.|...| ++|++++|+++ +.+.+.. .|+....+..++++++|+||+++| +.+...+
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~-p~~~~~v 81 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMK-PKDVAEA 81 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeC-HHHHHHH
Confidence 478999999999999999999988 78999999764 4455544 377777888899999999999996 8888888
Q ss_pred hcccccccccCCCCCEEEeccCC-ChHHHHHHHHHHHhcCCeeec-CCCCCCCccccCCceEEEecC---CHHHHHHHHH
Q 018213 145 ACGKHGAASGMGPGKGYVDVSTV-DGDTSKLINGHIKATGASFLE-APVSGSKKPAEDGQLIFLAAG---DKSLYNTVAP 219 (359)
Q Consensus 145 ~~~~~~~~~~l~~~~~vi~~s~~-~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g---~~~~~~~v~~ 219 (359)
+ +++.+.++++++||++..+ .+. .+.+.+. .+..++. .|.. +.........++++ +++.++.+++
T Consensus 82 l---~~l~~~~~~~~liIs~~aGi~~~---~l~~~~~-~~~~v~r~mPn~---~~~~~~~~t~~~~~~~~~~~~~~~v~~ 151 (279)
T PRK07679 82 L---IPFKEYIHNNQLIISLLAGVSTH---SIRNLLQ-KDVPIIRAMPNT---SAAILKSATAISPSKHATAEHIQTAKA 151 (279)
T ss_pred H---HHHHhhcCCCCEEEEECCCCCHH---HHHHHcC-CCCeEEEECCCH---HHHHhcccEEEeeCCCCCHHHHHHHHH
Confidence 8 7777777889999997444 443 3444332 2223332 3321 12222344455565 3678899999
Q ss_pred HHHHhCCCeEEeCccChHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccc-hhhh--hcccccc
Q 018213 220 LLDIMGKSRFYLGDVGNGAAMKLV--VNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISA-PMYS--LKGPSMI 294 (359)
Q Consensus 220 ll~~lg~~~~~~g~~~~~~~~kl~--~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s-~~~~--~~~~~~~ 294 (359)
+|+.+|..+ .+.+........+. .+.+.+.++.++.| .+.+.|++.+++.+++..+...+ .++. ...+..+
T Consensus 152 l~~~~G~~~-~v~e~~~~~~~a~~Gsgpa~~~~~~eal~e---~~~~~Gl~~~~a~~~~~~~~~gsa~~~~~~~~~~~~l 227 (279)
T PRK07679 152 LFETIGLVS-VVEEEDMHAVTALSGSGPAYIYYVVEAMEK---AAKKIGLKEDVAKSLILQTMIGAAEMLKASEKHPSIL 227 (279)
T ss_pred HHHhCCcEE-EeCHHHhhhHHHhhcCHHHHHHHHHHHHHH---HHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 999999854 44332111111111 12233333333333 47999999999999999864333 4443 3455666
Q ss_pred cCCC-CCCcchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCC
Q 018213 295 ESLY-PTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHG 342 (359)
Q Consensus 295 ~~~~-~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g 342 (359)
.+++ .|+++...+ ++..++.|+.--+.+++.+.++++.+.|
T Consensus 228 ~~~v~spgg~t~~g-------l~~l~~~~~~~~i~~a~~~a~~r~~~l~ 269 (279)
T PRK07679 228 RKEITSPGGTTEAG-------IEVLQEHRFQQALISCITQATQRSHNLG 269 (279)
T ss_pred HHhcCCCchHHHHH-------HHHHHHCChHHHHHHHHHHHHHHHHHHH
Confidence 6677 677765554 5567788999999999999999988764
No 55
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.84 E-value=1.1e-18 Score=158.50 Aligned_cols=257 Identities=17% Similarity=0.142 Sum_probs=196.6
Q ss_pred CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC-------------------C-CccCCCHHHHhhcCCEE
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-------------------G-AKYQPSPDEVAASCDVT 131 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-------------------g-~~~~~~~~~~~~~aDiv 131 (359)
|||.|||.|.+|...+..|+..||+|+++|.++++++.+.+. | ...+++.++.++++|++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~ 80 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV 80 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEE
Confidence 789999999999999999999999999999999887765531 1 45577888999999999
Q ss_pred EEeeCChh---------HHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcC----CeeecCCCCCCCcc-
Q 018213 132 FAMLADPE---------SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATG----ASFLEAPVSGSKKP- 197 (359)
Q Consensus 132 i~~~p~~~---------~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~----~~~~~~~~~~~~~~- 197 (359)
++|+|.|. .++.++ +++.+.++..+++|+-|+.++.+.+.+.+.+.... ..++.-|-|=.+..
T Consensus 81 fIavgTP~~~dg~aDl~~V~ava---~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~NPEFLREG~A 157 (414)
T COG1004 81 FIAVGTPPDEDGSADLSYVEAVA---KDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGKDFEVASNPEFLREGSA 157 (414)
T ss_pred EEEcCCCCCCCCCccHHHHHHHH---HHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccCCceEecChHHhcCcch
Confidence 99998764 344555 67777887779999999999999998888776543 34555665533322
Q ss_pred --ccCCceEEEecCCH-HHHHHHHHHHHHh--CCCeEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 018213 198 --AEDGQLIFLAAGDK-SLYNTVAPLLDIM--GKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVL 272 (359)
Q Consensus 198 --~~~~~~~~~~~g~~-~~~~~v~~ll~~l--g~~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~ 272 (359)
-...+.-+++|... .+.+.+++++..+ ...++...+...++..|++.|.+++.-++.++|...+|++.|++..++
T Consensus 158 v~D~~~PdRIViG~~~~~a~~~~~ely~~~~~~~~p~l~t~~~~AE~IKyaaNafLAtKIsFiNEia~ice~~g~D~~~V 237 (414)
T COG1004 158 VYDFLYPDRIVIGVRSERAAAVLRELYAPFLRQDVPILFTDLREAELIKYAANAFLATKISFINEIANICEKVGADVKQV 237 (414)
T ss_pred hhhccCCCeEEEccCChhHHHHHHHHHhhhhhcCCCEEEecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 22344456667644 4577888888765 344556666677999999999999999999999999999999999999
Q ss_pred HHHHhhccccchhhhhcccccccCCCCCCcchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q 018213 273 VEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKS 340 (359)
Q Consensus 273 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~ 340 (359)
.+.+.....-++. .++ ...|+....+-||+...+..++++|.+.++++++.+.-+....
T Consensus 238 ~~gIGlD~RIG~~-------fl~--aG~GyGGsCfPKD~~AL~~~a~~~~~~~~ll~avv~vN~~qk~ 296 (414)
T COG1004 238 AEGIGLDPRIGNH-------FLN--AGFGYGGSCFPKDTKALIANAEELGYDPNLLEAVVEVNERRKD 296 (414)
T ss_pred HHHcCCCchhhHh-------hCC--CCCCCCCcCCcHhHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 8887753221111 111 1123445567899999999999999999999999887666544
No 56
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=99.84 E-value=5e-21 Score=178.31 Aligned_cols=153 Identities=12% Similarity=0.090 Sum_probs=125.7
Q ss_pred eeeeeccccccccCCCCCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCCh
Q 018213 2 TLLVKSSYSHRFLSSSTPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGI 81 (359)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~ 81 (359)
.+...|+|... +++|++++++|++.|+. . .. +.+++|||||+|+
T Consensus 83 ~v~napg~na~--aVAE~v~~~lL~l~r~~------------g---------~~-------------l~gktvGIIG~G~ 126 (381)
T PRK00257 83 TWSSAPGCNAR--GVVDYVLGSLLTLAERE------------G---------VD-------------LAERTYGVVGAGH 126 (381)
T ss_pred EEEECCCcChH--HHHHHHHHHHHHHhccc------------C---------CC-------------cCcCEEEEECCCH
Confidence 34455776666 78889999999877741 0 11 6779999999999
Q ss_pred hhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChh----HHHHHhcccccccccCCC
Q 018213 82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPE----SAMDVACGKHGAASGMGP 157 (359)
Q Consensus 82 iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~----~~~~~~~~~~~~~~~l~~ 157 (359)
||+.+|+++..+|++|.+||+..... .+.....++++++++||+|++|+|.++ .|.+++ +++.+..|++
T Consensus 127 IG~~va~~l~a~G~~V~~~Dp~~~~~-----~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li--~~~~l~~mk~ 199 (381)
T PRK00257 127 VGGRLVRVLRGLGWKVLVCDPPRQEA-----EGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLL--DEAFLASLRP 199 (381)
T ss_pred HHHHHHHHHHHCCCEEEEECCccccc-----ccCccccCHHHHHhhCCEEEEeCcCCCCccccccccC--CHHHHhcCCC
Confidence 99999999999999999999854321 122234589999999999999999987 599999 7889999999
Q ss_pred CCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCcc
Q 018213 158 GKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKP 197 (359)
Q Consensus 158 ~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 197 (359)
|+++||++||..+++++|.++++++.+.....+++..+|.
T Consensus 200 gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~e~EP~ 239 (381)
T PRK00257 200 GAWLINASRGAVVDNQALREALLSGEDLDAVLDVWEGEPQ 239 (381)
T ss_pred CeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCC
Confidence 9999999999999999999999988777777777766653
No 57
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=99.83 E-value=3.5e-18 Score=164.00 Aligned_cols=252 Identities=16% Similarity=0.134 Sum_probs=188.0
Q ss_pred CCeEEEEcCChhhHHHHHHHHHC--CCcEEEEcCCccchhHHHhCC-------------------CccCCCHHHHhhcCC
Q 018213 71 PGRIGFLGMGIMGTPMAQNLLKA--GCDVTVWNRTKSKCDPLISLG-------------------AKYQPSPDEVAASCD 129 (359)
Q Consensus 71 ~~~igiiG~G~iG~~ia~~l~~~--g~~V~~~d~~~~~~~~~~~~g-------------------~~~~~~~~~~~~~aD 129 (359)
+|+|+|||+|.+|..+|..|+.. |++|+++|.++++++.+.+.+ ....++.++.+++||
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~ad 80 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEAD 80 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCC
Confidence 47899999999999999999987 488999999998877654321 234456677889999
Q ss_pred EEEEeeCChh--------------HHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhc--C--CeeecCCC
Q 018213 130 VTFAMLADPE--------------SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT--G--ASFLEAPV 191 (359)
Q Consensus 130 ivi~~~p~~~--------------~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~--~--~~~~~~~~ 191 (359)
++|+|+|.|. .+..++ +++.+.++++.+||.-|+.++...+.+...+.+. | +.+...|-
T Consensus 81 vi~I~V~TP~~~~g~~~~~~~Dls~v~~a~---~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~v~~~PE 157 (473)
T PLN02353 81 IVFVSVNTPTKTRGLGAGKAADLTYWESAA---RMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPE 157 (473)
T ss_pred EEEEEeCCCCCCCCCcCCCCCcHHHHHHHH---HHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeEEEECCC
Confidence 9999997553 344555 6777888999999999999999999998887763 3 34445665
Q ss_pred CCCC---ccccCCceEEEecCC-----HHHHHHHHHHHHHhCC-CeEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018213 192 SGSK---KPAEDGQLIFLAAGD-----KSLYNTVAPLLDIMGK-SRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHS 262 (359)
Q Consensus 192 ~~~~---~~~~~~~~~~~~~g~-----~~~~~~v~~ll~~lg~-~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~ 262 (359)
+-.+ ......+..+++|+. +++.+.+.++++.+-. .++.+.++..++..|++.|.+....++.++|...+|
T Consensus 158 rl~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ra~~Iaf~NEla~lc 237 (473)
T PLN02353 158 FLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAANAFLAQRISSVNAMSALC 237 (473)
T ss_pred ccCCCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5333 222234444555652 3457888899888752 456677888899999999999999999999999999
Q ss_pred HHcCCCHHHHHHHHhhccccchhhhhcccccccCCCCCCcchhHHHHHHHHHHHHHHhcCCC--chHHHHHHHH
Q 018213 263 EKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQS--TPIAAAANEL 334 (359)
Q Consensus 263 ~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~--~p~~~~~~~~ 334 (359)
++.|+|..++.+.+......++ .... .-+|+....+.||...+...+++.|++ .++++++.++
T Consensus 238 e~~giD~~eV~~~~~~d~rig~-------~~l~--PG~G~GG~ClpkD~~~L~~~a~~~g~~~~~~l~~~~~~i 302 (473)
T PLN02353 238 EATGADVSQVSHAVGKDSRIGP-------KFLN--ASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKM 302 (473)
T ss_pred HHhCCCHHHHHHHhCCCCcCCC-------CCCC--CCCCCCCcchhhhHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 9999999999988875432111 1110 112334456789999999999999998 7777666543
No 58
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.82 E-value=1.8e-18 Score=159.73 Aligned_cols=199 Identities=16% Similarity=0.200 Sum_probs=159.6
Q ss_pred CeEEEEcCChh--------------------hHHHHHHHHHCCCcEEEEcCCcc-----chhHHHhCCCccCCCHHHHhh
Q 018213 72 GRIGFLGMGIM--------------------GTPMAQNLLKAGCDVTVWNRTKS-----KCDPLISLGAKYQPSPDEVAA 126 (359)
Q Consensus 72 ~~igiiG~G~i--------------------G~~ia~~l~~~g~~V~~~d~~~~-----~~~~~~~~g~~~~~~~~~~~~ 126 (359)
|||.|.|+|+- |..+|..|++.|++|++|||+++ ..+.+.+.|+..+.+..++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~ 80 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAK 80 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHh
Confidence 56778888875 88999999999999999999876 334456678888888889999
Q ss_pred cCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHH-HHHHHHHHh----cCCeeec-CCCCCCCccccC
Q 018213 127 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTS-KLINGHIKA----TGASFLE-APVSGSKKPAED 200 (359)
Q Consensus 127 ~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~-~~l~~~l~~----~~~~~~~-~~~~~~~~~~~~ 200 (359)
++|+||+++|....++.++ ..+.+.++++++|||+|++.+... +.+.+.+.. .++.+.+ .++.+.+ .
T Consensus 81 ~ADvVIlaVP~~~~v~~Vl---~~L~~~L~~g~IVId~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~Gae----~ 153 (342)
T PRK12557 81 HGEIHILFTPFGKKTVEIA---KNILPHLPENAVICNTCTVSPVVLYYSLEGELRTKRKDVGISSMHPAAVPGTP----Q 153 (342)
T ss_pred CCCEEEEECCCcHHHHHHH---HHHHhhCCCCCEEEEecCCCHHHHHHHHHHHhcccccccCeeecCCccccccc----c
Confidence 9999999999666588998 778888999999999999998876 566666642 2444432 3333332 2
Q ss_pred CceEEEecC--------CHHHHHHHHHHHHHhCCCeEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 018213 201 GQLIFLAAG--------DKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVL 272 (359)
Q Consensus 201 ~~~~~~~~g--------~~~~~~~v~~ll~~lg~~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~ 272 (359)
+...++.++ +++.++++.++|+.+|.++++++ ++.+...|+++|.+.+...++.+|++.++++.|.++.++
T Consensus 154 g~l~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G~~v~~~~-~g~~~~vk~~~n~l~av~~a~~aE~~~l~~~~~~~p~~~ 232 (342)
T PRK12557 154 HGHYVIAGKTTNGTELATEEQIEKCVELAESIGKEPYVVP-ADVVSAVADMGSLVTAVALSGVLDYYSVGTKIIKAPKEM 232 (342)
T ss_pred chheEEeCCCcccccCCCHHHHHHHHHHHHHcCCEEEEeC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 333444443 88999999999999999887777 588999999999999999999999999999999999888
Q ss_pred HHHHhh
Q 018213 273 VEVVSQ 278 (359)
Q Consensus 273 ~~~~~~ 278 (359)
.+.+..
T Consensus 233 ~~~~~~ 238 (342)
T PRK12557 233 IEKQIL 238 (342)
T ss_pred HHHHHH
Confidence 766553
No 59
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.82 E-value=8e-19 Score=155.26 Aligned_cols=257 Identities=18% Similarity=0.251 Sum_probs=204.0
Q ss_pred CCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC---C--CccCCCHHHHh---hcCCEEEEeeCChhHH
Q 018213 70 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL---G--AKYQPSPDEVA---ASCDVTFAMLADPESA 141 (359)
Q Consensus 70 ~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~---g--~~~~~~~~~~~---~~aDivi~~~p~~~~~ 141 (359)
..+.||+||++.||+.++......|+.|.+|+|+.++++++.+. | +....|++|++ +...+|++.+.....+
T Consensus 5 ~~~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pV 84 (487)
T KOG2653|consen 5 PKADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPV 84 (487)
T ss_pred cccchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcH
Confidence 34679999999999999999999999999999999998877653 2 34466888886 4578888888777788
Q ss_pred HHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHH
Q 018213 142 MDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLL 221 (359)
Q Consensus 142 ~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll 221 (359)
..++ +++.+.|.+|.+|||-++....++..-.+.+..+|+-|+++.++|++..+..++. ++.+|+++++..+.++|
T Consensus 85 D~~I---~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GPS-lMpGg~~~Awp~ik~if 160 (487)
T KOG2653|consen 85 DQFI---EELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGPS-LMPGGSKEAWPHIKDIF 160 (487)
T ss_pred HHHH---HHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCCc-cCCCCChHHHHHHHHHH
Confidence 8888 8899999999999999999888888888999999999999999999999988887 57899999999999999
Q ss_pred HHhC-------CCeEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHhh---ccccchhhhhcc
Q 018213 222 DIMG-------KSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEK-VGLDPNVLVEVVSQ---GAISAPMYSLKG 290 (359)
Q Consensus 222 ~~lg-------~~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~-~Gi~~~~~~~~~~~---~~~~s~~~~~~~ 290 (359)
..+. ..+.++|+-|+++..|++.|.+.+.-++++.|++.++++ .|++-+++.+++.. +...|.+.+-+.
T Consensus 161 q~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia~vF~~WN~geleSfLieIT~ 240 (487)
T KOG2653|consen 161 QKIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIAEVFDDWNKGELESFLIEITA 240 (487)
T ss_pred HHHHHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHHHHHHhhcccchhHHHHHHhH
Confidence 7763 346789999999999999999999999999999999999 88998888877764 333444444332
Q ss_pred cccccCCCCCCcchhHHHHHH-------HHHHHHHHhcCCCchHHHHH
Q 018213 291 PSMIESLYPTAFPLKHQQKDL-------RLALGLAESVSQSTPIAAAA 331 (359)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~kd~-------~~~~~~a~~~g~~~p~~~~~ 331 (359)
+.+.-.+ ..+..+-.-..|. .+....+.++|+|.|++..+
T Consensus 241 dIlk~~d-~~G~~lv~kI~D~aGqKGTGkwt~~~Ale~g~Pv~lI~ea 287 (487)
T KOG2653|consen 241 DILKFKD-EDGKPLVDKILDKAGQKGTGKWTVISALELGVPVTLIGEA 287 (487)
T ss_pred HHhheec-cCCChHHHHHHhhhcCCCccHHHHHHHHHhCCChHHHHHH
Confidence 2221111 1222221112222 55667788899999877554
No 60
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.82 E-value=1.8e-18 Score=160.56 Aligned_cols=270 Identities=14% Similarity=0.156 Sum_probs=177.6
Q ss_pred CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC--C------------CccCCCHHHHh-hcCCEEEEeeC
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--G------------AKYQPSPDEVA-ASCDVTFAMLA 136 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~--g------------~~~~~~~~~~~-~~aDivi~~~p 136 (359)
|+|+|||+|.||.++|..|++.|++|.+|+|+++..+.+.+. + +....+.++.+ ..+|+|++++|
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavk 80 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVP 80 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeC
Confidence 579999999999999999999999999999988766655542 1 12335566665 58999999995
Q ss_pred ChhHHHHHhcccccccc-cCCCCCEEEeccCCChHH-----HHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCC
Q 018213 137 DPESAMDVACGKHGAAS-GMGPGKGYVDVSTVDGDT-----SKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGD 210 (359)
Q Consensus 137 ~~~~~~~~~~~~~~~~~-~l~~~~~vi~~s~~~~~~-----~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 210 (359)
+.++..++ +++.+ .++++..++.+..|.... .+.+.+.+....+..+..|.+..+........+.+.+.+
T Consensus 81 -s~~~~~~l---~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~~~~~~~Gp~~a~~~~~~~~~~~~~~~~~ 156 (326)
T PRK14620 81 -TQQLRTIC---QQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNNPIAILSGPSFAKEIAEKLPCSIVLAGQN 156 (326)
T ss_pred -HHHHHHHH---HHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCCceEeecCCcHHHHHHcCCCcEEEEecCC
Confidence 88999998 77776 777787777777765321 334444443333344444443222112222233444556
Q ss_pred HHHHHHHHHHHHHhCCCeEEeCccChHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHcCC--CHHH
Q 018213 211 KSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGS-----------------MMATFSEGLLHSEKVGL--DPNV 271 (359)
Q Consensus 211 ~~~~~~v~~ll~~lg~~~~~~g~~~~~~~~kl~~n~~~~~-----------------~~~~~~Ea~~l~~~~Gi--~~~~ 271 (359)
.+..+++.++|+.-+.++....+.....|.|++.|.+... +..++.|+..++++.|. ++++
T Consensus 157 ~~~~~~l~~~l~~~~~~~~~~~Di~g~~~~k~~~N~ia~~~g~~~g~~~~~n~~~~l~~~~~~E~~~v~~a~G~~~~~~~ 236 (326)
T PRK14620 157 ETLGSSLISKLSNENLKIIYSQDIIGVQIGAALKNIIAIACGIVLGKNLGNNAHAAVITKGMNEIKTLYSAKNGSIDLNT 236 (326)
T ss_pred HHHHHHHHHHHCCCCeEEEecCcchhhhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHhCCCCCcch
Confidence 6666778888888888888888866688999988875433 35688999999999987 7888
Q ss_pred HH------HHHhhccccchhhhhcc-------cccccCCCCCCcchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 018213 272 LV------EVVSQGAISAPMYSLKG-------PSMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVA 338 (359)
Q Consensus 272 ~~------~~~~~~~~~s~~~~~~~-------~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a 338 (359)
+. +++.... +...+++. ..+.++......+.-++....+.+.++++++|+++|+++++++++
T Consensus 237 ~~gl~g~gdl~~t~~--~~~~rN~~~G~~l~~g~~~~d~~~~~~~~vegi~~~~~v~~~a~~~~i~~P~~~~l~~~~--- 311 (326)
T PRK14620 237 LIGPSCLGDLILTCT--TLHSRNMSFGFKIGNGFNINQILSEGKSVIEGFSTVKPLISLAKKLNIELPICESIYNLL--- 311 (326)
T ss_pred hhccchhhhhhheec--CCCCCcHHHHHHHHCCCCHHHHHHhCCCEeecHHHHHHHHHHHHHhCCCCCHHHHHHHHH---
Confidence 84 4543211 11111111 122222111111222233445789999999999999999999987
Q ss_pred HHCCCCCccHHHHHHH
Q 018213 339 KSHGLSDEDFSAVIEA 354 (359)
Q Consensus 339 ~~~g~~~~d~~~~~~~ 354 (359)
+++.+...+++.
T Consensus 312 ----~~~~~~~~~~~~ 323 (326)
T PRK14620 312 ----YENISLEKTISV 323 (326)
T ss_pred ----hCCCCHHHHHHH
Confidence 345555555544
No 61
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.81 E-value=2.1e-18 Score=160.54 Aligned_cols=275 Identities=16% Similarity=0.147 Sum_probs=193.2
Q ss_pred CCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCC---------------CccCCCHHHHhhcCCEEEEe
Q 018213 70 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLG---------------AKYQPSPDEVAASCDVTFAM 134 (359)
Q Consensus 70 ~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g---------------~~~~~~~~~~~~~aDivi~~ 134 (359)
.+|+|+|||+|.||.++|..|+..| +|.+|.|+++..+.+.+.+ +....++++.++++|+|+++
T Consensus 6 ~~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVila 84 (341)
T PRK12439 6 REPKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMG 84 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEE
Confidence 3488999999999999999999999 6888889887766655431 12345777888999999999
Q ss_pred eCChhHHHHHhcccccccccCCCCCEEEeccCCChHH-----HHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecC
Q 018213 135 LADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDT-----SKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAG 209 (359)
Q Consensus 135 ~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~-----~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 209 (359)
+| +..++.++ +++.+.++++..+|+++.|-... .+.+.+.+.......+..|.+..+.........++.+.
T Consensus 85 vp-s~~~~~vl---~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~~~~~l~GP~~a~ev~~g~~t~~via~~ 160 (341)
T PRK12439 85 VP-SHGFRGVL---TELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGILAGPNIAREVAEGYAAAAVLAMP 160 (341)
T ss_pred eC-HHHHHHHH---HHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCCCeEEEECCCHHHHHHcCCCeEEEEEeC
Confidence 97 88899998 88888888888899988875532 23444444322334455665544333333333445556
Q ss_pred CHHHHHHHHHHHHHhCCCeEEeCccChHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHcCCCHHHH
Q 018213 210 DKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMG-----------------SMMATFSEGLLHSEKVGLDPNVL 272 (359)
Q Consensus 210 ~~~~~~~v~~ll~~lg~~~~~~g~~~~~~~~kl~~n~~~~-----------------~~~~~~~Ea~~l~~~~Gi~~~~~ 272 (359)
+++..+.+.++|+.-+.+++...|.-..+|.|.+-|.++. .+..++.|+..++++.|.+++++
T Consensus 161 ~~~~~~~v~~lf~~~~~~v~~s~Di~gve~~~alkNv~aia~G~~~g~~~g~n~~aali~~~~~E~~~~~~a~G~~~~t~ 240 (341)
T PRK12439 161 DQHLATRLSPLFRTRRFRVYTTDDVVGVEMAGALKNVFAIAVGMGYSLGIGENTRAMVIARALREMTKLGVAMGGNPETF 240 (341)
T ss_pred CHHHHHHHHHHhCCCCEEEEEcCchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhCCCcccc
Confidence 7788899999999999999888885558888877765443 35678999999999999999998
Q ss_pred HHHHhhc----cccchhhhhc--ccccccCCCCC-----CcchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHC
Q 018213 273 VEVVSQG----AISAPMYSLK--GPSMIESLYPT-----AFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSH 341 (359)
Q Consensus 273 ~~~~~~~----~~~s~~~~~~--~~~~~~~~~~~-----~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~ 341 (359)
..+...+ +..|...+++ +..+.++.... ...+.++..-...+.++++++++++|+++++++++
T Consensus 241 ~gl~G~GDl~~Tc~s~~sRN~~~G~~l~~g~~~~~~~~~~~~~~EG~~~~~~~~~~~~~~~~~~Pi~~~~~~il------ 314 (341)
T PRK12439 241 AGLAGMGDLIVTCTSQRSRNRHVGEQLGAGKPIDEIIASMNQVAEGVKAASVVMEFADEYGLNMPIAREVDAVI------ 314 (341)
T ss_pred cccchhhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHhcCCEEehHHHHHHHHHHHHHhCCCCCHHHHHHHHH------
Confidence 8766544 2333333332 23333332110 01123455667889999999999999999999998
Q ss_pred CCCCccHHHHHHHHH
Q 018213 342 GLSDEDFSAVIEALK 356 (359)
Q Consensus 342 g~~~~d~~~~~~~~~ 356 (359)
+++.+...+++.+-
T Consensus 315 -~~~~~~~~~~~~l~ 328 (341)
T PRK12439 315 -NHGSTVEQAYRGLI 328 (341)
T ss_pred -hCCCCHHHHHHHHh
Confidence 35556666665543
No 62
>PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D ....
Probab=99.81 E-value=4.7e-19 Score=140.39 Aligned_cols=121 Identities=40% Similarity=0.646 Sum_probs=112.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhhcccc-cccCCCCCCcchhHHHHHHHH
Q 018213 235 GNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPS-MIESLYPTAFPLKHQQKDLRL 313 (359)
Q Consensus 235 ~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~-~~~~~~~~~~~~~~~~kd~~~ 313 (359)
|.+...|+++|.+....+.+++|++.++++.|++++.+.+++..+.+.|++++.+.+. +.++++.++|+++.+.||+.+
T Consensus 1 G~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~Gld~~~~~~vl~~~~~~s~~~~~~~~~~~~~~~~~~~f~l~~~~KDl~l 80 (122)
T PF14833_consen 1 GAGQAMKLANNLLIAANMAALAEALALAEKAGLDPEQLLDVLSAGSGGSWMLKNRAPRMILNGDFDPGFSLDLARKDLRL 80 (122)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHTSTTHBHHHHHHHHHHHHTTTTCSSSBHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHccCCcCchHHHhhhhhhhhcccCCccchhHhhccHHHH
Confidence 5789999999999999999999999999999999999999999999999999998885 888999999999999999999
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHCCCCCccHHHHHHHH
Q 018213 314 ALGLAESVSQSTPIAAAANELYKVAKSHGLSDEDFSAVIEAL 355 (359)
Q Consensus 314 ~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~~~~d~~~~~~~~ 355 (359)
+.+++++.|+|+|+.+.+.++++.+.++|+|++|+++++++|
T Consensus 81 ~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~D~sai~~~~ 122 (122)
T PF14833_consen 81 ALDLAKEAGVPLPLGSAARQLYQAAKAQGGGDEDFSAIYKLL 122 (122)
T ss_dssp HHHHHHHTT---HHHHHHHHHHHHHHHTTTTTSBGGGGHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHhHC
Confidence 999999999999999999999999999999999999999986
No 63
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.80 E-value=8.2e-18 Score=158.14 Aligned_cols=180 Identities=16% Similarity=0.230 Sum_probs=144.2
Q ss_pred CCCeEEEEc-CChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhccc
Q 018213 70 LPGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK 148 (359)
Q Consensus 70 ~~~~igiiG-~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~ 148 (359)
..++|+||| +|.||..+|+.|...|++|.+||++.. .+.++++++||+||+|+|. ..+..++
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~-------------~~~~~~~~~aDlVilavP~-~~~~~~~--- 159 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW-------------DRAEDILADAGMVIVSVPI-HLTEEVI--- 159 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc-------------hhHHHHHhcCCEEEEeCcH-HHHHHHH---
Confidence 448899998 999999999999999999999998531 2566788899999999984 4677777
Q ss_pred ccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeee-cCCCCCCCccccCCceEEEecC-CHHHHHHHHHHHHHhCC
Q 018213 149 HGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL-EAPVSGSKKPAEDGQLIFLAAG-DKSLYNTVAPLLDIMGK 226 (359)
Q Consensus 149 ~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~v~~ll~~lg~ 226 (359)
+++.+ ++++++|+|+++.+......+.+.+. ..|+ .||++|++.....+..++++++ +++.++.+.++++.+|.
T Consensus 160 ~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~---~~fvg~HPm~G~~~~~~~~~~vv~~~~~~~~~~~~~~~l~~~lG~ 235 (374)
T PRK11199 160 ARLPP-LPEDCILVDLTSVKNAPLQAMLAAHS---GPVLGLHPMFGPDVGSLAKQVVVVCDGRQPEAYQWLLEQIQVWGA 235 (374)
T ss_pred HHHhC-CCCCcEEEECCCccHHHHHHHHHhCC---CCEEeeCCCCCCCCcccCCCEEEEcCCCCchHHHHHHHHHHHCCC
Confidence 66767 89999999999988876666665542 2588 5999998776666666666666 66788999999999999
Q ss_pred CeEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 018213 227 SRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVE 274 (359)
Q Consensus 227 ~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~ 274 (359)
+++++++.++...+++++.. .++.+++++..+++ .+.+.+.+.+
T Consensus 236 ~v~~~~~~~HD~~~a~vshL---pH~~a~al~~~l~~-~~~~~~~~~~ 279 (374)
T PRK11199 236 RLHRISAVEHDQNMAFIQAL---RHFATFAYGLHLAK-ENVDLEQLLA 279 (374)
T ss_pred EEEECCHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-cCCCHHHHHH
Confidence 99999999989999988843 55566677777766 6777766544
No 64
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.80 E-value=2.6e-18 Score=156.70 Aligned_cols=189 Identities=15% Similarity=0.187 Sum_probs=143.7
Q ss_pred CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHh-------C-----------------CCccCCCHHHHhhc
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-------L-----------------GAKYQPSPDEVAAS 127 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~-------~-----------------g~~~~~~~~~~~~~ 127 (359)
++|+|||+|.||..+|..|+..|++|++||++++..+.+.+ . ++..+.++++.+++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD 81 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence 56999999999999999999999999999999887665431 1 13446678888999
Q ss_pred CCEEEEeeCChhHHHHHhcccccccccCCCCCEE-EeccCCChHHHHHHHHHHHh----cCCeeecCCCCCCCccccCCc
Q 018213 128 CDVTFAMLADPESAMDVACGKHGAASGMGPGKGY-VDVSTVDGDTSKLINGHIKA----TGASFLEAPVSGSKKPAEDGQ 202 (359)
Q Consensus 128 aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~v-i~~s~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~~~~~~ 202 (359)
||+|++|+|...+++..++ .++.+.+++++++ +|+|+..+.. +.+.+.. .|++|+ .|+.+ ++
T Consensus 82 aD~Vi~avpe~~~~k~~~~--~~l~~~~~~~~il~~~tSt~~~~~---l~~~~~~~~r~~g~h~~-~Pv~~-------~~ 148 (288)
T PRK09260 82 ADLVIEAVPEKLELKKAVF--ETADAHAPAECYIATNTSTMSPTE---IASFTKRPERVIAMHFF-NPVHK-------MK 148 (288)
T ss_pred CCEEEEeccCCHHHHHHHH--HHHHhhCCCCcEEEEcCCCCCHHH---HHhhcCCcccEEEEecC-CCccc-------Cc
Confidence 9999999998888776653 4566678888866 6888777754 4444432 255555 45433 35
Q ss_pred eEEEecC---CHHHHHHHHHHHHHhCCCeEEeCc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhh
Q 018213 203 LIFLAAG---DKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQ 278 (359)
Q Consensus 203 ~~~~~~g---~~~~~~~v~~ll~~lg~~~~~~g~-~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~ 278 (359)
++.++++ +++.++++.++++.+|+.++++++ +| ++.|-+.. ..++|++.+.++.-.++++++..+..
T Consensus 149 Lve~v~g~~t~~~~~~~~~~~l~~lg~~~v~v~d~~G------f~~nRl~~---~~~~ea~~~~~~gv~~~~~iD~~~~~ 219 (288)
T PRK09260 149 LVELIRGLETSDETVQVAKEVAEQMGKETVVVNEFPG------FVTSRISA---LVGNEAFYMLQEGVATAEDIDKAIRL 219 (288)
T ss_pred eEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCccc------HHHHHHHH---HHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 7778887 899999999999999999999998 76 44454444 34679998888765789999998876
Q ss_pred cccc
Q 018213 279 GAIS 282 (359)
Q Consensus 279 ~~~~ 282 (359)
+.+.
T Consensus 220 g~g~ 223 (288)
T PRK09260 220 GLNF 223 (288)
T ss_pred CCCC
Confidence 5443
No 65
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.80 E-value=1.5e-17 Score=150.57 Aligned_cols=192 Identities=15% Similarity=0.309 Sum_probs=142.4
Q ss_pred CeEEEEcCChhhHHHHHHHHHCCC--cEEEEcCCccchhHHHhCCCc-cCCCHHHHhhcCCEEEEeeCChhHHHHHhccc
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLISLGAK-YQPSPDEVAASCDVTFAMLADPESAMDVACGK 148 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~g~--~V~~~d~~~~~~~~~~~~g~~-~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~ 148 (359)
|+|+|||+|.||..+|..|.+.|+ +|++||+++++.+.+.+.|+. ...+.+++. ++|+||+|+| +..+..++
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp-~~~~~~~~--- 75 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIP-VDAIIEIL--- 75 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCc-HHHHHHHH---
Confidence 479999999999999999999886 789999998877776666653 345677765 5999999997 66777888
Q ss_pred ccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec-CCCCCCC----cc----ccCCceEEEec---CCHHHHHH
Q 018213 149 HGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSK----KP----AEDGQLIFLAA---GDKSLYNT 216 (359)
Q Consensus 149 ~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~----~~----~~~~~~~~~~~---g~~~~~~~ 216 (359)
.++.+ ++++++|+++++......+.+.+. .+..|++ +|+.|.+ .. ...+..+++++ .+++.++.
T Consensus 76 ~~l~~-l~~~~iv~d~gs~k~~i~~~~~~~---~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~~~~~~~~~ 151 (275)
T PRK08507 76 PKLLD-IKENTTIIDLGSTKAKIIESVPKH---IRKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEKSGEKHQER 151 (275)
T ss_pred HHHhc-cCCCCEEEECccchHHHHHHHHHh---cCCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCCCCCHHHHHH
Confidence 77777 889999999888766554444333 2345777 6987653 11 12455666665 36778899
Q ss_pred HHHHHHHhCCCeEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 018213 217 VAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVS 277 (359)
Q Consensus 217 v~~ll~~lg~~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~ 277 (359)
+.++++.+|.+++++++.++...++++++.. +.+..++.+++ . .+.+.+.+.++..
T Consensus 152 v~~l~~~~G~~~~~~~~~~hD~~~a~vs~lp-h~~a~~l~~~~---~-~~~~~~~~~~~~~ 207 (275)
T PRK08507 152 AKEIFSGLGMRIVYMDAKEHDLHAAYISHLP-HIISFALANTV---L-KEEDERNIFDLAG 207 (275)
T ss_pred HHHHHHHhCCEEEEeCHHHHHHHHHHHhHHH-HHHHHHHHHHH---H-hcCChHHHHhhcc
Confidence 9999999999999999999999999998874 45555555555 1 3556666555544
No 66
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.80 E-value=1.5e-17 Score=151.93 Aligned_cols=196 Identities=12% Similarity=0.136 Sum_probs=145.3
Q ss_pred CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHh-----------C---------CCccCCCHHHHhhcCCEE
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-----------L---------GAKYQPSPDEVAASCDVT 131 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~-----------~---------g~~~~~~~~~~~~~aDiv 131 (359)
++|+|||+|.||..+|..++..|++|.+||++++..+...+ . .+....++++++++||+|
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlV 87 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFI 87 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEE
Confidence 67999999999999999999999999999999875443211 1 235567888999999999
Q ss_pred EEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecC--
Q 018213 132 FAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAG-- 209 (359)
Q Consensus 132 i~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-- 209 (359)
+.++|...+++..+| +++.+.++++++|- +++. .....++.+.+... -+++..+.+.++... +++-++.+
T Consensus 88 iEavpE~l~vK~~lf--~~l~~~~~~~aIla-SnTS-~l~~s~la~~~~~p-~R~~g~HffnP~~~~---pLVEVv~g~~ 159 (321)
T PRK07066 88 QESAPEREALKLELH--ERISRAAKPDAIIA-SSTS-GLLPTDFYARATHP-ERCVVGHPFNPVYLL---PLVEVLGGER 159 (321)
T ss_pred EECCcCCHHHHHHHH--HHHHHhCCCCeEEE-ECCC-ccCHHHHHHhcCCc-ccEEEEecCCccccC---ceEEEeCCCC
Confidence 999999999998885 67777888888554 3333 44455677766432 244443333333222 34445544
Q ss_pred -CHHHHHHHHHHHHHhCCCeEEeC-c-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccch
Q 018213 210 -DKSLYNTVAPLLDIMGKSRFYLG-D-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAP 284 (359)
Q Consensus 210 -~~~~~~~v~~ll~~lg~~~~~~g-~-~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~ 284 (359)
+++.++.+.++++.+|+.++.+. + +| .+.|-+... .+.|++.+.++...++++++.++..+.+..|
T Consensus 160 T~~e~~~~~~~f~~~lGk~pV~v~kd~pG------Fi~NRl~~a---~~~EA~~lv~eGvas~edID~a~~~g~g~r~ 228 (321)
T PRK07066 160 TAPEAVDAAMGIYRALGMRPLHVRKEVPG------FIADRLLEA---LWREALHLVNEGVATTGEIDDAIRFGAGIRW 228 (321)
T ss_pred CCHHHHHHHHHHHHHcCCEeEecCCCCcc------HHHHHHHHH---HHHHHHHHHHhCCCCHHHHHHHHHhCCCCCc
Confidence 79999999999999999998884 5 66 455554443 4679999999988999999999998766543
No 67
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.79 E-value=3.9e-17 Score=156.40 Aligned_cols=196 Identities=20% Similarity=0.297 Sum_probs=149.5
Q ss_pred CeEEEEc-CChhhHHHHHHHHHCCCcEEEEcCCccchhHH-HhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccc
Q 018213 72 GRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL-ISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (359)
Q Consensus 72 ~~igiiG-~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~-~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~ 149 (359)
|+|+||| +|.||.++|+.|...|++|++|+|+++..... .+.|+....+..+.+.++|+|++|+| +..+..++ +
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp-~~~~~~vl---~ 76 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVP-INVTEDVI---K 76 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecC-HHHHHHHH---H
Confidence 5799997 89999999999999999999999988765333 34477667788888999999999998 56778888 7
Q ss_pred cccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec-CCCCCCCccccCCceEEEecC---CHHHHHHHHHHHHHhC
Q 018213 150 GAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPAEDGQLIFLAAG---DKSLYNTVAPLLDIMG 225 (359)
Q Consensus 150 ~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g---~~~~~~~v~~ll~~lg 225 (359)
++.+.++++++++|+++......+.+.+.+. .+..|++ +|++|+......+..++++++ +++.++.+.++|+.+|
T Consensus 77 ~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~-~~~~~V~~HPmaGp~~~~~~g~~~il~p~~~~~~~~~~~v~~ll~~~G 155 (437)
T PRK08655 77 EVAPHVKEGSLLMDVTSVKERPVEAMEEYAP-EGVEILPTHPMFGPRTPSLKGQVVILTPTEKRSNPWFDKVKNFLEKEG 155 (437)
T ss_pred HHHhhCCCCCEEEEcccccHHHHHHHHHhcC-CCCEEEEcCCCCCCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHHcC
Confidence 8888899999999999988888777777653 4677887 699887655566677666654 5788899999999999
Q ss_pred CCeEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 018213 226 KSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVV 276 (359)
Q Consensus 226 ~~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~ 276 (359)
.+++.+++..+...+ ...+.+.+....++..+ +.+.|++.+....+.
T Consensus 156 ~~v~~~~~e~HD~~~-a~vs~lph~~a~al~~~---l~~~g~~~~~~~~~a 202 (437)
T PRK08655 156 ARVIVTSPEEHDRIM-SVVQGLTHFAYISIAST---LKRLGVDIKESRKFA 202 (437)
T ss_pred CEEEECCHHHHHHHH-HHHHHHHHHHHHHHHHH---HHHcCCCHHHHHhhc
Confidence 999888876544444 33344444443333333 266788877765443
No 68
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.79 E-value=6.2e-18 Score=164.51 Aligned_cols=186 Identities=19% Similarity=0.309 Sum_probs=147.9
Q ss_pred CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHH-----------HhCC-------------CccCCCHHHHhhc
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL-----------ISLG-------------AKYQPSPDEVAAS 127 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~-----------~~~g-------------~~~~~~~~~~~~~ 127 (359)
++|||||+|.||..||..++..|++|++||++++..+.. .+.| +..+.++++ +.+
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~ 86 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LAD 86 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCC
Confidence 679999999999999999999999999999999876652 3334 456677766 469
Q ss_pred CCEEEEeeCChhHHHHHhcccccccccCCCCCEE-EeccCCChHHHHHHHHHHHh----cCCeeec-CCCCCCCccccCC
Q 018213 128 CDVTFAMLADPESAMDVACGKHGAASGMGPGKGY-VDVSTVDGDTSKLINGHIKA----TGASFLE-APVSGSKKPAEDG 201 (359)
Q Consensus 128 aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~v-i~~s~~~~~~~~~l~~~l~~----~~~~~~~-~~~~~~~~~~~~~ 201 (359)
||+||.++|++.+++..++ .++...+++++++ .|+|+.++. .+.+.+.. .|++|++ +|++
T Consensus 87 aDlViEav~E~~~vK~~vf--~~l~~~~~~~ailasntStl~i~---~la~~~~~p~r~~G~hff~Pa~v~--------- 152 (507)
T PRK08268 87 CDLVVEAIVERLDVKQALF--AQLEAIVSPDCILATNTSSLSIT---AIAAALKHPERVAGLHFFNPVPLM--------- 152 (507)
T ss_pred CCEEEEcCcccHHHHHHHH--HHHHhhCCCCcEEEECCCCCCHH---HHHhhcCCcccEEEEeecCCcccC---------
Confidence 9999999999999999885 4455556788888 488887775 45555543 2777777 5555
Q ss_pred ceEEEecC---CHHHHHHHHHHHHHhCCCeEEeCc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 018213 202 QLIFLAAG---DKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVS 277 (359)
Q Consensus 202 ~~~~~~~g---~~~~~~~v~~ll~~lg~~~~~~g~-~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~ 277 (359)
+++.++++ +++.++++.++++.+|+.++++++ +| ++.|.+.. ..+.|++.++++.+++++++++++.
T Consensus 153 ~LvEvv~g~~Ts~~~~~~~~~l~~~lgk~pv~v~d~pG------fi~Nrll~---~~~~Ea~~l~~~g~~~~~~iD~al~ 223 (507)
T PRK08268 153 KLVEVVSGLATDPAVADALYALARAWGKTPVRAKDTPG------FIVNRAAR---PYYTEALRVLEEGVADPATIDAILR 223 (507)
T ss_pred eeEEEeCCCCCCHHHHHHHHHHHHHcCCceEEecCCCC------hHHHHHHH---HHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 45667765 899999999999999999999998 67 45554443 3678999999999999999999997
Q ss_pred hccc
Q 018213 278 QGAI 281 (359)
Q Consensus 278 ~~~~ 281 (359)
.+.+
T Consensus 224 ~~~G 227 (507)
T PRK08268 224 EAAG 227 (507)
T ss_pred hcCC
Confidence 6544
No 69
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.79 E-value=2.7e-17 Score=152.67 Aligned_cols=273 Identities=12% Similarity=0.052 Sum_probs=194.0
Q ss_pred CCCeEEEEcCChhhHHHHHHHHHCC-------CcEEEEcCCccc-----hhHHHhC--------------CCccCCCHHH
Q 018213 70 LPGRIGFLGMGIMGTPMAQNLLKAG-------CDVTVWNRTKSK-----CDPLISL--------------GAKYQPSPDE 123 (359)
Q Consensus 70 ~~~~igiiG~G~iG~~ia~~l~~~g-------~~V~~~d~~~~~-----~~~~~~~--------------g~~~~~~~~~ 123 (359)
..++|+|||.|++|+++|..|...| ++|.+|.|+++. .+.+.+. ++...+++++
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~e 89 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKE 89 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHH
Confidence 4478999999999999999999887 899999998752 3444322 2344678889
Q ss_pred HhhcCCEEEEeeCChhHHHHHhcccccccc--cCCCCCEEEeccCCChH-------HHHHHHHHHHhcCCeeecCCCCCC
Q 018213 124 VAASCDVTFAMLADPESAMDVACGKHGAAS--GMGPGKGYVDVSTVDGD-------TSKLINGHIKATGASFLEAPVSGS 194 (359)
Q Consensus 124 ~~~~aDivi~~~p~~~~~~~~~~~~~~~~~--~l~~~~~vi~~s~~~~~-------~~~~l~~~l~~~~~~~~~~~~~~~ 194 (359)
+++++|+|++++| +..++.++ +++.+ .++++.++|+++-|-.. ..+.+.+.+ ...+.++..|.+..
T Consensus 90 av~~aDiIvlAVP-sq~l~~vl---~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l-~~~~~~LsGPs~A~ 164 (365)
T PTZ00345 90 AVEDADLLIFVIP-HQFLESVL---SQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEEL-GIPCCALSGANVAN 164 (365)
T ss_pred HHhcCCEEEEEcC-hHHHHHHH---HHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHh-CCCeEEEECCCHHH
Confidence 9999999999997 88899998 77777 67778889988666321 233444444 23566778898888
Q ss_pred CccccCCceEEEecCCHHHHHHHHHHHHHhCCCeEEeCc-c--ChHHHHHHH--------------HHHHHHHHHHHHHH
Q 018213 195 KKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGD-V--GNGAAMKLV--------------VNMIMGSMMATFSE 257 (359)
Q Consensus 195 ~~~~~~~~~~~~~~g~~~~~~~v~~ll~~lg~~~~~~g~-~--~~~~~~kl~--------------~n~~~~~~~~~~~E 257 (359)
+........+++.+.+.+..+.++++|+.-.++++...| . ..+.++|-+ .|.-.+.+..++.|
T Consensus 165 Eva~~~pt~~vias~~~~~a~~~~~lf~~~~frvy~s~Dv~GvEl~galKNviAIa~Gi~dGl~~G~N~kaalitrgl~E 244 (365)
T PTZ00345 165 DVAREEFSEATIGCEDKDDALIWQRLFDRPYFKINCVPDVIGVEVCGALKNIIALAAGFCDGLGLGTNTKSAIIRIGLEE 244 (365)
T ss_pred HHHcCCCcEEEEEeCCHHHHHHHHHHhCCCcEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Confidence 777777777777888999999999999888888877766 3 334555533 35666677899999
Q ss_pred HHHHHHHcC--CCHHHHHHHHhhc----cccchhhhhc--ccccccCC--CC--C---C---cchhHHHHHHHHHHHHHH
Q 018213 258 GLLHSEKVG--LDPNVLVEVVSQG----AISAPMYSLK--GPSMIESL--YP--T---A---FPLKHQQKDLRLALGLAE 319 (359)
Q Consensus 258 a~~l~~~~G--i~~~~~~~~~~~~----~~~s~~~~~~--~~~~~~~~--~~--~---~---~~~~~~~kd~~~~~~~a~ 319 (359)
+..++++.| .+++++..+...+ +.+| .+++ +..+.++. .. . . ..+.++..-...+.++++
T Consensus 245 m~~l~~a~g~~~~~~T~~glaG~GDLi~Tc~s--SRN~~~G~~l~~g~~~~~~~~~~~~~~~~~~vEG~~t~~~v~~l~~ 322 (365)
T PTZ00345 245 MKLFGKIFFPNVMDETFFESCGLADLITTCLG--GRNVRCAAEFAKRNGKKSWEEIEAELLNGQKLQGTVTLKEVYEVLE 322 (365)
T ss_pred HHHHHHHhCCCCCccchhccchHhHhhhcccC--CCcHHHHHHHhccCCCCCHHHHHHHhhCCcEechHHHHHHHHHHHH
Confidence 999999997 4888888765544 2222 2222 33333321 10 0 0 112234555788899999
Q ss_pred hcCC--CchHHHHHHHHHHHHHHCCCCCccHHHHHHHHH
Q 018213 320 SVSQ--STPIAAAANELYKVAKSHGLSDEDFSAVIEALK 356 (359)
Q Consensus 320 ~~g~--~~p~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~ 356 (359)
++++ ++|+.+++++++. ++.+...+++.+.
T Consensus 323 ~~~i~~~~Pi~~~vy~il~-------~~~~~~~~~~~l~ 354 (365)
T PTZ00345 323 SHDLKKEFPLFTVTYKIAF-------EGADPSSLIDVLS 354 (365)
T ss_pred HcCCCCCCCHHHHHHHHHh-------CCCCHHHHHHHHH
Confidence 9999 8999999999983 4445555555543
No 70
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=99.78 E-value=2.1e-17 Score=152.19 Aligned_cols=256 Identities=18% Similarity=0.177 Sum_probs=171.0
Q ss_pred CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCc-------------cCCCHHHHhhcCCEEEEeeCCh
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK-------------YQPSPDEVAASCDVTFAMLADP 138 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~-------------~~~~~~~~~~~aDivi~~~p~~ 138 (359)
|+|+|||+|.||..+|..|++.|++|++++| +++.+.+.+.|.. ..++.++..+.+|+|++|+| +
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk-~ 78 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVK-A 78 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEec-c
Confidence 5799999999999999999999999999999 6666666654432 13455666688999999996 6
Q ss_pred hHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhc----CCeeecCCCCCCCccccCCceEEEecC----C
Q 018213 139 ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT----GASFLEAPVSGSKKPAEDGQLIFLAAG----D 210 (359)
Q Consensus 139 ~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~g----~ 210 (359)
.+++.++ +.+.+.+.++.+||.+.+|- ...+.+.+.+... ++.++++...++......+...+.++. .
T Consensus 79 ~~~~~~~---~~l~~~~~~~~~ii~~~nG~-~~~~~l~~~~~~~~v~~g~~~~~~~~~~~g~v~~~~~~~~~iG~~~~~~ 154 (305)
T PRK12921 79 YQLDAAI---PDLKPLVGEDTVIIPLQNGI-GQLEQLEPYFGRERVLGGVVFISAQLNGDGVVVQRADHRLTFGEIPGQR 154 (305)
T ss_pred cCHHHHH---HHHHhhcCCCCEEEEeeCCC-ChHHHHHHhCCcccEEEEEEEEEEEECCCeEEEEcCCCcEEEcCCCCCc
Confidence 7888888 77777778888888887764 3344565555432 233344443332222111222233332 2
Q ss_pred HHHHHHHHHHHHHhCCCeEEeCccChHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHcCCCH
Q 018213 211 KSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGS---------------------MMATFSEGLLHSEKVGLDP 269 (359)
Q Consensus 211 ~~~~~~v~~ll~~lg~~~~~~g~~~~~~~~kl~~n~~~~~---------------------~~~~~~Ea~~l~~~~Gi~~ 269 (359)
.+..+.+..+|...|..+....+.....|.|++.|...+. +..++.|...++++.|++.
T Consensus 155 ~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~n~l~a~~~~~~g~~~~~~~~~~l~~~~~~E~~~v~~a~G~~~ 234 (305)
T PRK12921 155 SERTRAVRDALAGARLEVVLSENIRQDIWRKLLFNAVMNGMTALGRATVGGILSRPGGRDLARALLRECLAVARAEGAPL 234 (305)
T ss_pred CHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHhCccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 4566678888888888877778888899999998876544 3457889999999999863
Q ss_pred --HHHHHHHhhccccchhhhhcccccccCCCCCC-cchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 018213 270 --NVLVEVVSQGAISAPMYSLKGPSMIESLYPTA-FPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAK 339 (359)
Q Consensus 270 --~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~-~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~ 339 (359)
+.+.+.+...... .....++|.++-...+ ..++.. .+.++++++++|+++|.++.++++++...
T Consensus 235 ~~~~~~~~~~~~~~~---~~~~~sSm~~D~~~gr~tEid~i---~G~vv~~a~~~gv~~P~~~~l~~~~~~~~ 301 (305)
T PRK12921 235 RDDVVEEIVKIFAGA---PGDMKTSMLRDMEKGRPLEIDHL---QGVLLRRARAHGIPTPILDTVYALLKAYE 301 (305)
T ss_pred ChhHHHHHHHHHhcc---CCCCCcHHHHHHHcCCcccHHHH---HHHHHHHHHHhCCCCcHHHHHHHHHHHHh
Confidence 3443433321000 0011223332211111 234544 67899999999999999999999997764
No 71
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.78 E-value=9.7e-18 Score=162.66 Aligned_cols=187 Identities=18% Similarity=0.201 Sum_probs=144.1
Q ss_pred CCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHH-----------HhCC-------------CccCCCHHHHhh
Q 018213 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL-----------ISLG-------------AKYQPSPDEVAA 126 (359)
Q Consensus 71 ~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~-----------~~~g-------------~~~~~~~~~~~~ 126 (359)
-++|+|||+|.||..||..++..|++|++||++++..+.. .+.| +..+.++++ +.
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~ 83 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LA 83 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hC
Confidence 3679999999999999999999999999999998876532 2223 345667766 46
Q ss_pred cCCEEEEeeCChhHHHHHhcccccccccCCCCCEEE-eccCCChHHHHHHHHHHHh----cCCeeec-CCCCCCCccccC
Q 018213 127 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV-DVSTVDGDTSKLINGHIKA----TGASFLE-APVSGSKKPAED 200 (359)
Q Consensus 127 ~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi-~~s~~~~~~~~~l~~~l~~----~~~~~~~-~~~~~~~~~~~~ 200 (359)
+||+||.|+|++.+++..+| .++...+++++++. |+|+.++. .+.+.+.. .|++|++ +|++
T Consensus 84 ~aDlVIEav~E~~~vK~~vf--~~l~~~~~~~~IlasnTStl~i~---~iA~~~~~p~r~~G~HFf~Papv~-------- 150 (503)
T TIGR02279 84 DAGLVIEAIVENLEVKKALF--AQLEELCPADTIIASNTSSLSIT---AIAAGLARPERVAGLHFFNPAPVM-------- 150 (503)
T ss_pred CCCEEEEcCcCcHHHHHHHH--HHHHhhCCCCeEEEECCCCCCHH---HHHHhcCcccceEEEeccCccccC--------
Confidence 99999999999999998875 44555667777766 55554443 45555432 3677777 5554
Q ss_pred CceEEEecC---CHHHHHHHHHHHHHhCCCeEEeCc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 018213 201 GQLIFLAAG---DKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVV 276 (359)
Q Consensus 201 ~~~~~~~~g---~~~~~~~v~~ll~~lg~~~~~~g~-~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~ 276 (359)
+++.+++| +++.++.+.++++.+|+.++++++ +| .+.|-+.. ..+.|++.++++.+++++++++++
T Consensus 151 -~LvEvv~g~~Ts~e~~~~~~~l~~~lgk~pv~v~d~pG------fi~Nrl~~---~~~~EA~~l~e~g~a~~~~ID~al 220 (503)
T TIGR02279 151 -ALVEVVSGLATAAEVAEQLYETALAWGKQPVHCHSTPG------FIVNRVAR---PYYAEALRALEEQVAAPAVLDAAL 220 (503)
T ss_pred -ceEEEeCCCCCCHHHHHHHHHHHHHcCCeeeEeCCCCC------cHHHHHHH---HHHHHHHHHHHcCCCCHHHHHHHH
Confidence 36777888 899999999999999999999998 66 24444443 467899999999999999999999
Q ss_pred hhccc
Q 018213 277 SQGAI 281 (359)
Q Consensus 277 ~~~~~ 281 (359)
+.+.+
T Consensus 221 ~~~~G 225 (503)
T TIGR02279 221 RDGAG 225 (503)
T ss_pred HhcCC
Confidence 87544
No 72
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.78 E-value=3.6e-17 Score=147.99 Aligned_cols=205 Identities=20% Similarity=0.249 Sum_probs=159.0
Q ss_pred CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHh-------------------CC-CccCCCHHHHhhcCCEE
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-------------------LG-AKYQPSPDEVAASCDVT 131 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~-------------------~g-~~~~~~~~~~~~~aDiv 131 (359)
++|||||+|.||..+|..++..|++|+++|.++.+++.+.. .| .+.+++.+++ +.||++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l-~~~dv~ 88 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEEL-KECDVF 88 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhc-ccCCEE
Confidence 88999999999999999999999999999999887765542 12 3445566554 599999
Q ss_pred EEeeCChh---------HHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhc--CCee-----e-cCCCC--
Q 018213 132 FAMLADPE---------SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT--GASF-----L-EAPVS-- 192 (359)
Q Consensus 132 i~~~p~~~---------~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~--~~~~-----~-~~~~~-- 192 (359)
++|+|.+- .+.... +.+.+.|++|.++|--|+..|.+++.+...+.+. |+.+ + .+|--
T Consensus 89 iI~VPTPl~~~~~pDls~v~~aa---~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~laysPERv~ 165 (436)
T COG0677 89 IICVPTPLKKYREPDLSYVESAA---RSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAYSPERVL 165 (436)
T ss_pred EEEecCCcCCCCCCChHHHHHHH---HHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEeeCccccC
Confidence 99999652 223333 6677889999999999999999999999887764 3332 1 13321
Q ss_pred -CCCccccCCceEEEecCCHHHHHHHHHHHHHhCCCeEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Q 018213 193 -GSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNV 271 (359)
Q Consensus 193 -~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~lg~~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~ 271 (359)
|.....-....-++.|.++...+.+..+.+.+-..++.+.+...+++.|+..|.+....+++.+|...++++.|++..+
T Consensus 166 PG~~~~el~~~~kVIgG~tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~EN~fRdVNIALaNElali~~~~GIdvwe 245 (436)
T COG0677 166 PGNVLKELVNNPKVIGGVTPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTENTFRDVNIALANELALICNAMGIDVWE 245 (436)
T ss_pred CCchhhhhhcCCceeecCCHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhCCcHHH
Confidence 1111111122234444577888888899999877788888999999999999999999999999999999999999999
Q ss_pred HHHHHhhcc
Q 018213 272 LVEVVSQGA 280 (359)
Q Consensus 272 ~~~~~~~~~ 280 (359)
+.++.+.-+
T Consensus 246 vIeaAnt~P 254 (436)
T COG0677 246 VIEAANTKP 254 (436)
T ss_pred HHHHhccCC
Confidence 999988653
No 73
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.77 E-value=2.7e-17 Score=147.95 Aligned_cols=251 Identities=14% Similarity=0.175 Sum_probs=171.0
Q ss_pred CeEEEEcCChhhHHHHHHHHHCCC----cEEEEcCCccchhHHHh-CCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhc
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKAGC----DVTVWNRTKSKCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 146 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~g~----~V~~~d~~~~~~~~~~~-~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~ 146 (359)
++|+|||+|+||.++++.|.+.|+ +|+++||++++.+.+.+ .|+..+.+..+++++||+||+|+| |.++..++
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavk-P~~~~~vl- 80 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIK-PDLYSSVI- 80 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeC-hHHHHHHH-
Confidence 579999999999999999998875 69999999888777664 677777788889999999999996 78999998
Q ss_pred ccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeee-cCCCCCCCccccCCceEEEecC--CHHHHHHHHHHHHH
Q 018213 147 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL-EAPVSGSKKPAEDGQLIFLAAG--DKSLYNTVAPLLDI 223 (359)
Q Consensus 147 ~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~v~~ll~~ 223 (359)
+++.+.++++.++|++..|-.. +.+.+.+... ..++ -.|... .....+...+..+. +++..+.++.+|+.
T Consensus 81 --~~l~~~~~~~~lvISi~AGi~i--~~l~~~l~~~-~~vvR~MPN~~--~~vg~g~t~~~~~~~~~~~~~~~v~~lf~~ 153 (272)
T PRK12491 81 --NQIKDQIKNDVIVVTIAAGKSI--KSTENEFDRK-LKVIRVMPNTP--VLVGEGMSALCFNEMVTEKDIKEVLNIFNI 153 (272)
T ss_pred --HHHHHhhcCCcEEEEeCCCCcH--HHHHHhcCCC-CcEEEECCChH--HHHcCceEEEEeCCCCCHHHHHHHHHHHHc
Confidence 7777778888999988666544 4566666322 1222 234322 22233444433332 56678899999999
Q ss_pred hCCCeEEeCc--cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccc-cchhhhhcc--cc-cccCC
Q 018213 224 MGKSRFYLGD--VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAI-SAPMYSLKG--PS-MIESL 297 (359)
Q Consensus 224 lg~~~~~~g~--~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~-~s~~~~~~~--~~-~~~~~ 297 (359)
+|... .+.+ .....++--+...+.+.++.++.++. .+.|++.++..+++.++.. ...++.... +. +.+.-
T Consensus 154 ~G~~~-~~~E~~~d~~talsgsgPAf~~~~~eal~~a~---v~~Gl~~~~A~~l~~~t~~G~a~ll~~~~~~p~~l~~~V 229 (272)
T PRK12491 154 FGQTE-VVNEKLMDVVTSISGSSPAYVYMFIEAMADAA---VLGGMPRKQAYKFAAQAVLGSAKMVLETGIHPGELKDMV 229 (272)
T ss_pred CCCEE-EEcHHHhhhHHHhccCcHHHHHHHHHHHHHHH---HHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhC
Confidence 99864 4544 22233332233455555555555554 8899999999999987643 222332211 11 22223
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCC
Q 018213 298 YPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHG 342 (359)
Q Consensus 298 ~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g 342 (359)
..|+.+... .++..++.|+..-+.+++.+.++++.+.+
T Consensus 230 ~sPGGtT~~-------gl~~le~~~~~~~~~~av~aa~~r~~el~ 267 (272)
T PRK12491 230 CSPGGTTIE-------AVATLEEKGLRTAIISAMKRCTQKSMEMS 267 (272)
T ss_pred CCCchHHHH-------HHHHHHHCChHHHHHHHHHHHHHHHHHHH
Confidence 345543333 35678889999999999999998887653
No 74
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=99.77 E-value=2.6e-17 Score=151.53 Aligned_cols=256 Identities=21% Similarity=0.216 Sum_probs=168.3
Q ss_pred CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCc-----------cCCCHHHHhhcCCEEEEeeCChhH
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK-----------YQPSPDEVAASCDVTFAMLADPES 140 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~-----------~~~~~~~~~~~aDivi~~~p~~~~ 140 (359)
|+|+|||+|.||..+|..|...|++|++++|+++..+.+.+.|.. ...+.+++ +.+|+|++++| +.+
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k-~~~ 78 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVK-AYQ 78 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEecc-ccc
Confidence 579999999999999999999999999999987777766665552 23455555 88999999996 678
Q ss_pred HHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCC----eeecCCCCCCCc--cccCCceEEEecC---CH
Q 018213 141 AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGA----SFLEAPVSGSKK--PAEDGQLIFLAAG---DK 211 (359)
Q Consensus 141 ~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~----~~~~~~~~~~~~--~~~~~~~~~~~~g---~~ 211 (359)
+..++ +.+.+.+.+++.||.+.++.. ..+.+.+.+....+ .+..+...++.. ....+.. .++. ..
T Consensus 79 ~~~~~---~~l~~~l~~~~~iv~~~nG~~-~~~~l~~~~~~~~i~~~~~~~~~~~~~p~~v~~~~~g~~--~ig~~~~~~ 152 (304)
T PRK06522 79 LPAAL---PSLAPLLGPDTPVLFLQNGVG-HLEELAAYIGPERVLGGVVTHAAELEGPGVVRHTGGGRL--KIGEPDGES 152 (304)
T ss_pred HHHHH---HHHhhhcCCCCEEEEecCCCC-cHHHHHHhcCcccEEEEEEEEeeEecCCCEEEEcCCCCE--EEeCCCCCc
Confidence 88888 778777888888888877643 23345554433221 111111111111 1111222 2222 22
Q ss_pred HHHHHHHHHHHHhCCCeEEeCccChHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHcCCCH-
Q 018213 212 SLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGS---------------------MMATFSEGLLHSEKVGLDP- 269 (359)
Q Consensus 212 ~~~~~v~~ll~~lg~~~~~~g~~~~~~~~kl~~n~~~~~---------------------~~~~~~Ea~~l~~~~Gi~~- 269 (359)
+..+.+.++|+..+..+....+.....|.|++.|...+. +..++.|...++++.|+++
T Consensus 153 ~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~~~~ 232 (304)
T PRK06522 153 AAAEALADLLNAAGLDVEWSPDIRTEIWRKLWVNCVINPLTALLGCTNGELLADPDYRALIRALMEEVAAVAEAEGVHLS 232 (304)
T ss_pred HHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhHHHHHhCCChhHHhcCccHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 346778888888888877777788899999998865543 3457889999999998753
Q ss_pred -HHHHHHHhhccccchhhhhcccccccCCCCC-CcchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHC
Q 018213 270 -NVLVEVVSQGAISAPMYSLKGPSMIESLYPT-AFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSH 341 (359)
Q Consensus 270 -~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~ 341 (359)
+.+.+.+...... .....++|.++-... ...++.. .+.++++++++|+++|.++.++++++.....
T Consensus 233 ~~~~~~~~~~~~~~---~~~~~sSm~~D~~~gr~tEid~i---~G~~v~~a~~~gv~~P~~~~l~~~~~~~~~~ 300 (304)
T PRK06522 233 VEEVREYVRQVIQK---TAANTSSMLQDLEAGRPTEIDAI---VGYVLRRGRKHGIPTPLNDALYGLLKAKESE 300 (304)
T ss_pred hHHHHHHHHHHhhc---cCCCCchHHHHHHcCCCcccchh---ccHHHHHHHHcCCCCcHHHHHHHHHHHHHHh
Confidence 4444444322100 001112333321111 1224444 6779999999999999999999999877544
No 75
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=99.76 E-value=8.8e-17 Score=148.29 Aligned_cols=257 Identities=18% Similarity=0.183 Sum_probs=170.3
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCcc--------------CCCHHHHhhcCCEEEEe
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY--------------QPSPDEVAASCDVTFAM 134 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~--------------~~~~~~~~~~aDivi~~ 134 (359)
+..|+|+|||+|.||..+|..|++.|++|+++.|++. +...+.|... ..+. +....+|+|++|
T Consensus 3 ~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vila 79 (313)
T PRK06249 3 SETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSA-EDMPPCDWVLVG 79 (313)
T ss_pred CcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcch-hhcCCCCEEEEE
Confidence 4558999999999999999999999999999999752 4444444221 1222 345679999999
Q ss_pred eCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhc----CCeeecCCCCCCCcc--ccCCceEEE-e
Q 018213 135 LADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT----GASFLEAPVSGSKKP--AEDGQLIFL-A 207 (359)
Q Consensus 135 ~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~--~~~~~~~~~-~ 207 (359)
+| ..++..++ +.+.+.+.++..++...+|.. ..+.+.+.+... ++.++++...++... ...+...+- .
T Consensus 80 vK-~~~~~~~~---~~l~~~~~~~~~iv~lqNG~~-~~e~l~~~~~~~~v~~g~~~~~a~~~~pg~v~~~~~g~~~iG~~ 154 (313)
T PRK06249 80 LK-TTANALLA---PLIPQVAAPDAKVLLLQNGLG-VEEQLREILPAEHLLGGLCFICSNRVGPGVIHHLAYGRVNLGYH 154 (313)
T ss_pred ec-CCChHhHH---HHHhhhcCCCCEEEEecCCCC-cHHHHHHHCCCCcEEEEeeeEeEecCCCeEEEECCCCcEEEecC
Confidence 95 66777777 667777788888888776643 344566665433 223333332222111 112232221 1
Q ss_pred cC-C-----HHHHHHHHHHHHHhCCCeEEeCccChHHHHHHHHHHHHHH---------------------HHHHHHHHHH
Q 018213 208 AG-D-----KSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGS---------------------MMATFSEGLL 260 (359)
Q Consensus 208 ~g-~-----~~~~~~v~~ll~~lg~~~~~~g~~~~~~~~kl~~n~~~~~---------------------~~~~~~Ea~~ 260 (359)
.+ + .+..+.+..+|+..|..+....++....|.|++.|...+. +..++.|+..
T Consensus 155 ~~~~~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g~l~~~~~~~~l~~~~~~E~~~ 234 (313)
T PRK06249 155 SGPAADDGITARVEEGAALFRAAGIDSQAMPDLAQARWQKLVWNIPYNGLSVLLNASTDPLMADPDSRALIRALMAEVIQ 234 (313)
T ss_pred CCCcccchHHHHHHHHHHHHHhCCCCceeCchHHHHHHhHhheecchhHHHHHhCCChHHHHhCccHHHHHHHHHHHHHH
Confidence 12 2 4666778889999999888888888899999998865543 3457889999
Q ss_pred HHHHcCCC--HHHHHHHHhhccccchhhhhcccccccCCCCCC--cchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 018213 261 HSEKVGLD--PNVLVEVVSQGAISAPMYSLKGPSMIESLYPTA--FPLKHQQKDLRLALGLAESVSQSTPIAAAANELYK 336 (359)
Q Consensus 261 l~~~~Gi~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~--~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~ 336 (359)
++++.|++ .+.+.+.+...... + ...++|.+ |...+ ..++.. .+.++++++++|+++|+++.++++++
T Consensus 235 va~a~Gi~~~~~~~~~~~~~~~~~-~---~~~sSM~q-D~~~gr~tEid~i---~G~vv~~a~~~Gi~~P~~~~l~~~l~ 306 (313)
T PRK06249 235 GAAACGHTLPEGYADHMLAVTERM-P---DYRPSMYH-DFEEGRPLELEAI---YANPLAAARAAGCAMPRVEMLYQALE 306 (313)
T ss_pred HHHhcCCCCChhHHHHHHHHhhcC-C---CCCChHHH-HHHCCCcccHHHH---hhHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 99999986 23333333221111 0 11345554 22222 235555 78999999999999999999999988
Q ss_pred HHHHC
Q 018213 337 VAKSH 341 (359)
Q Consensus 337 ~a~~~ 341 (359)
....+
T Consensus 307 ~~e~~ 311 (313)
T PRK06249 307 FLDRR 311 (313)
T ss_pred HHHhh
Confidence 77644
No 76
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=99.76 E-value=3.7e-17 Score=150.79 Aligned_cols=259 Identities=13% Similarity=0.066 Sum_probs=181.3
Q ss_pred eEEEEcCChhhHHHHHHHHHCC--------CcEEEEcCCc-----cchhHHHhC--------C------CccCCCHHHHh
Q 018213 73 RIGFLGMGIMGTPMAQNLLKAG--------CDVTVWNRTK-----SKCDPLISL--------G------AKYQPSPDEVA 125 (359)
Q Consensus 73 ~igiiG~G~iG~~ia~~l~~~g--------~~V~~~d~~~-----~~~~~~~~~--------g------~~~~~~~~~~~ 125 (359)
+|+|||.|++|+++|..|+.+| ++|.+|.|++ +..+.+.+. | +...+++++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 5899999999999999999988 9999999832 222222211 1 33457889999
Q ss_pred hcCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHH-------HHHHHHHHHhcCCeeecCCCCCCCccc
Q 018213 126 ASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDT-------SKLINGHIKATGASFLEAPVSGSKKPA 198 (359)
Q Consensus 126 ~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~-------~~~l~~~l~~~~~~~~~~~~~~~~~~~ 198 (359)
+++|+|++++| +..++.++ +++.+.++++..+|+++-|-... .+.+.+.+ ...+.++..|.+..+...
T Consensus 81 ~~ADiIIlAVP-s~~i~~vl---~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l-~~~~~~lsGP~~A~Eva~ 155 (342)
T TIGR03376 81 KGADILVFVIP-HQFLEGIC---KQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEEL-GIPCGVLSGANLANEVAK 155 (342)
T ss_pred hcCCEEEEECC-hHHHHHHH---HHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHh-CCCeEEeeCcchHHHHHc
Confidence 99999999998 78888888 77878888889999997764322 23444444 345667888888877776
Q ss_pred cCCceEEEecCC----HHHHHHHHHHHHHhCCCeEEeCc-c--ChHHHHHHHH--------------HHHHHHHHHHHHH
Q 018213 199 EDGQLIFLAAGD----KSLYNTVAPLLDIMGKSRFYLGD-V--GNGAAMKLVV--------------NMIMGSMMATFSE 257 (359)
Q Consensus 199 ~~~~~~~~~~g~----~~~~~~v~~ll~~lg~~~~~~g~-~--~~~~~~kl~~--------------n~~~~~~~~~~~E 257 (359)
.....+.+.+.+ .+..+.++++|+.--++++...| . ..+.++|-+. |.-.+.+..++.|
T Consensus 156 ~~pt~~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~Dv~GvEl~galKNv~AIa~Gi~~Gl~~g~N~~aalitrgl~E 235 (342)
T TIGR03376 156 EKFSETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDDVAGVEIAGALKNVVAIAAGFVDGLGWGDNAKAAVMRRGLLE 235 (342)
T ss_pred CCCceEEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 666677777777 78889999999877777777666 3 3345555332 6666778899999
Q ss_pred HHHHHHHcCCCHH--HHHHHHhhc----cccchhhhhccccccc-CCCC-----C--CcchhHHHHHHHHHHHHHHhcCC
Q 018213 258 GLLHSEKVGLDPN--VLVEVVSQG----AISAPMYSLKGPSMIE-SLYP-----T--AFPLKHQQKDLRLALGLAESVSQ 323 (359)
Q Consensus 258 a~~l~~~~Gi~~~--~~~~~~~~~----~~~s~~~~~~~~~~~~-~~~~-----~--~~~~~~~~kd~~~~~~~a~~~g~ 323 (359)
+..+++..|-+++ ++..+...+ +..|..-..++..+.+ +... . ....-++..-...+.++++++++
T Consensus 236 m~~l~~~~g~~~~~~T~~gl~G~GDL~~Tc~ssRN~~~G~~l~~~g~~~~~~~~~~~~~~~vEG~~t~~~~~~l~~~~~i 315 (342)
T TIGR03376 236 MIKFARMFFPTGEVTFTFESCGVADLITTCLGGRNFKVGRAFAKTGKSLEELEKELLNGQSLQGVATAKEVHELLKNKNK 315 (342)
T ss_pred HHHHHHHhCCCCCCCcccccchhhhhhheeecCccHHHHHHHHhcCCCHHHHHHhhcCCcEEeeHHHHHHHHHHHHHcCC
Confidence 9999999998776 776554433 1222111112233333 2110 0 01122234446788999999999
Q ss_pred C--chHHHHHHHHHH
Q 018213 324 S--TPIAAAANELYK 336 (359)
Q Consensus 324 ~--~p~~~~~~~~~~ 336 (359)
+ +|+.+++++++.
T Consensus 316 ~~~~Pi~~~vy~il~ 330 (342)
T TIGR03376 316 DDEFPLFEAVYQILY 330 (342)
T ss_pred CcCCCHHHHHHHHHh
Confidence 9 999999999884
No 77
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.76 E-value=3.2e-17 Score=148.72 Aligned_cols=172 Identities=17% Similarity=0.254 Sum_probs=132.6
Q ss_pred CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCc-cCCCHHHHhhcCCEEEEeeCChhHHHHHhccccc
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK-YQPSPDEVAASCDVTFAMLADPESAMDVACGKHG 150 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~-~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~ 150 (359)
|+|+|||+|.||..+|..|.+.|++|++||++++..+.+.+.|.. ...+..+.++++|+||+|+| +..+..++ ++
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp-~~~~~~~~---~~ 76 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALP-IGLLLPPS---EQ 76 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCC-HHHHHHHH---HH
Confidence 579999999999999999999999999999998877777666642 23233356789999999998 66677777 77
Q ss_pred ccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec-CCCCCCCcc--------ccCCceEEEec---CCHHHHHHHH
Q 018213 151 AASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKP--------AEDGQLIFLAA---GDKSLYNTVA 218 (359)
Q Consensus 151 ~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~--------~~~~~~~~~~~---g~~~~~~~v~ 218 (359)
+.+.++++.+++|+++.+....+.+.+. ...|++ +|++|++.. ...+...+++. ++++.++.+.
T Consensus 77 l~~~l~~~~ii~d~~Svk~~~~~~~~~~----~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~~~~~~~v~ 152 (279)
T PRK07417 77 LIPALPPEAIVTDVGSVKAPIVEAWEKL----HPRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTDLNALAIVE 152 (279)
T ss_pred HHHhCCCCcEEEeCcchHHHHHHHHHHh----hCCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCCHHHHHHHH
Confidence 7788889999999988876554444332 235787 899987632 12344444443 3788899999
Q ss_pred HHHHHhCCCeEEeCccChHHHHHHHHHHHHHHH
Q 018213 219 PLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSM 251 (359)
Q Consensus 219 ~ll~~lg~~~~~~g~~~~~~~~kl~~n~~~~~~ 251 (359)
++++.+|.+++++++.++....+++++......
T Consensus 153 ~l~~~lG~~~v~~~~~~hD~~~a~~shlp~~~a 185 (279)
T PRK07417 153 ELAVSLGSKIYTADPEEHDRAVALISHLPVMVS 185 (279)
T ss_pred HHHHHcCCEEEEcCHHHHHHHHHHHcchHHHHH
Confidence 999999999999999998999999987664444
No 78
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.76 E-value=2.4e-16 Score=142.27 Aligned_cols=250 Identities=18% Similarity=0.202 Sum_probs=163.5
Q ss_pred CCeEEEEcCChhhHHHHHHHHHCC---CcEEEEcCCccchhHHHhC-CCccCCCHHHHhhcCCEEEEeeCChhHHHHHhc
Q 018213 71 PGRIGFLGMGIMGTPMAQNLLKAG---CDVTVWNRTKSKCDPLISL-GAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 146 (359)
Q Consensus 71 ~~~igiiG~G~iG~~ia~~l~~~g---~~V~~~d~~~~~~~~~~~~-g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~ 146 (359)
+|+|+|||+|+||..+++.|...| ++|.+|+|++++.+.+.+. |+....+.++++.++|+|++|+| +..++.++
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~-~~~~~~v~- 79 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVK-PQVMEEVL- 79 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcC-HHHHHHHH-
Confidence 378999999999999999999998 7899999998877777664 77777788888899999999996 77888888
Q ss_pred ccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec-CCCCCCCccccCCceEEEecC--CHHHHHHHHHHHHH
Q 018213 147 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPAEDGQLIFLAAG--DKSLYNTVAPLLDI 223 (359)
Q Consensus 147 ~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g--~~~~~~~v~~ll~~ 223 (359)
+++.+.+ +++||+++.+.+. +.+.+.+. .+.+++. +|.. +.....+...+..+. +++.++.++.+|+.
T Consensus 80 --~~l~~~~--~~~vvs~~~gi~~--~~l~~~~~-~~~~iv~~~P~~--p~~~~~~~~~i~~~~~~~~~~~~~v~~l~~~ 150 (267)
T PRK11880 80 --SELKGQL--DKLVVSIAAGVTL--ARLERLLG-ADLPVVRAMPNT--PALVGAGMTALTANALVSAEDRELVENLLSA 150 (267)
T ss_pred --HHHHhhc--CCEEEEecCCCCH--HHHHHhcC-CCCcEEEecCCc--hHHHcCceEEEecCCCCCHHHHHHHHHHHHh
Confidence 6665555 5688888776643 34555543 2334443 4422 122233333333443 78899999999999
Q ss_pred hCCCeEEeCc-cChHHHHHHHHH--HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccc-cchhhhhcc--cccc-cC
Q 018213 224 MGKSRFYLGD-VGNGAAMKLVVN--MIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAI-SAPMYSLKG--PSMI-ES 296 (359)
Q Consensus 224 lg~~~~~~g~-~~~~~~~kl~~n--~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~-~s~~~~~~~--~~~~-~~ 296 (359)
+|. ++.+.+ .......-+..+ .+...+ +..+...+.+.|+++++..+++..... ...+..... +... ..
T Consensus 151 lG~-~~~~~~e~~~d~~~a~~~~~pa~~~~~---~~~~~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~~l~~~ 226 (267)
T PRK11880 151 FGK-VVWVDDEKQMDAVTAVSGSGPAYVFLF---IEALADAGVKLGLPREQARKLAAQTVLGAAKLLLESGEHPAELRDN 226 (267)
T ss_pred CCe-EEEECChHhcchHHHHhcChHHHHHHH---HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHh
Confidence 997 445553 322222223222 222222 223333357799999999988886532 111221111 1111 11
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCC
Q 018213 297 LYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHG 342 (359)
Q Consensus 297 ~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g 342 (359)
-..|+.+ +...++..++.|++..+.+++.+.++++.+.+
T Consensus 227 v~tpgG~-------t~~gl~~l~~~g~~~~~~~a~~~~~~ra~~~~ 265 (267)
T PRK11880 227 VTSPGGT-------TIAALRVLEEKGLRAAVIEAVQAAAKRSKELG 265 (267)
T ss_pred CCCCcHH-------HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhc
Confidence 1123222 34456778889999999999999999998764
No 79
>PLN02256 arogenate dehydrogenase
Probab=99.75 E-value=2.3e-16 Score=143.74 Aligned_cols=167 Identities=17% Similarity=0.198 Sum_probs=129.7
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHh-hcCCEEEEeeCChhHHHHHhcc
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVA-ASCDVTFAMLADPESAMDVACG 147 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~-~~aDivi~~~p~~~~~~~~~~~ 147 (359)
.++++|+|||+|.||..+++.|.+.|++|++|+++.. .+...+.|+....+.++++ .++|+|++|+| +..+..++
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~-~~~a~~~gv~~~~~~~e~~~~~aDvVilavp-~~~~~~vl-- 109 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDY-SDIAAELGVSFFRDPDDFCEEHPDVVLLCTS-ILSTEAVL-- 109 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccH-HHHHHHcCCeeeCCHHHHhhCCCCEEEEecC-HHHHHHHH--
Confidence 6778999999999999999999999999999999863 2334445776677888876 47999999997 67888888
Q ss_pred cccc-cccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec-CCCCCCCcc--ccCCceEEEec-------CCHHHHHH
Q 018213 148 KHGA-ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKP--AEDGQLIFLAA-------GDKSLYNT 216 (359)
Q Consensus 148 ~~~~-~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~-------g~~~~~~~ 216 (359)
+++ ...++++++|+|+++++....+.+.+.+.. +..|+. +|++|.+.. ...+...+... .+++..+.
T Consensus 110 -~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~-~~~~V~~HPmaG~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 187 (304)
T PLN02256 110 -RSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPE-EFDILCTHPMFGPESGKGGWAGLPFVYDKVRIGDEGEREARCER 187 (304)
T ss_pred -HhhhhhccCCCCEEEecCCchHHHHHHHHHhCCC-CCeEEecCCCCCCCCCccccCCCeEEEecceecCCCCCHHHHHH
Confidence 666 566889999999999887777777766643 556776 899988743 22333333332 26778899
Q ss_pred HHHHHHHhCCCeEEeCccChHHHHH
Q 018213 217 VAPLLDIMGKSRFYLGDVGNGAAMK 241 (359)
Q Consensus 217 v~~ll~~lg~~~~~~g~~~~~~~~k 241 (359)
+.++++.+|.+++.+....+...+.
T Consensus 188 l~~l~~~lGa~v~~~~~eeHD~~vA 212 (304)
T PLN02256 188 FLDIFEEEGCRMVEMSCEEHDRYAA 212 (304)
T ss_pred HHHHHHHCCCEEEEeCHHHHhHHHH
Confidence 9999999999999988866555544
No 80
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.75 E-value=1.9e-16 Score=139.65 Aligned_cols=249 Identities=19% Similarity=0.222 Sum_probs=169.6
Q ss_pred CeEEEEcCChhhHHHHHHHHHCC----CcEEEEcCCccchhHH-HhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhc
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKAG----CDVTVWNRTKSKCDPL-ISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 146 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~g----~~V~~~d~~~~~~~~~-~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~ 146 (359)
++|||||+|+||.+|+..|.+.| .+|++.+|++++.+.+ .+.|+...++.++++.++|+|++++ +|.....++
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~Lav-KPq~~~~vl- 79 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAV-KPQDLEEVL- 79 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEe-ChHhHHHHH-
Confidence 78999999999999999999999 5899999999887644 4456666777889999999999999 799999998
Q ss_pred ccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec-CCCCCCCccccCCceEEEec--CCHHHHHHHHHHHHH
Q 018213 147 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPAEDGQLIFLAA--GDKSLYNTVAPLLDI 223 (359)
Q Consensus 147 ~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--g~~~~~~~v~~ll~~ 223 (359)
.++.+ ..++++||.+..|-+ .+.+.+.+. +..++- .|... .....+...+..+ .+++..+.+..+|+.
T Consensus 80 --~~l~~-~~~~~lvISiaAGv~--~~~l~~~l~--~~~vvR~MPNt~--a~vg~g~t~i~~~~~~~~~~~~~v~~l~~~ 150 (266)
T COG0345 80 --SKLKP-LTKDKLVISIAAGVS--IETLERLLG--GLRVVRVMPNTP--ALVGAGVTAISANANVSEEDKAFVEALLSA 150 (266)
T ss_pred --HHhhc-ccCCCEEEEEeCCCC--HHHHHHHcC--CCceEEeCCChH--HHHcCcceeeecCccCCHHHHHHHHHHHHh
Confidence 77766 678999997765544 345777765 333433 34322 1223333333332 277888899999999
Q ss_pred hCCCeEEeCccChHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcc-ccchhhhhccc--cc-ccCC
Q 018213 224 MGKSRFYLGDVGNGAAMKLV--VNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGA-ISAPMYSLKGP--SM-IESL 297 (359)
Q Consensus 224 lg~~~~~~g~~~~~~~~kl~--~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~-~~s~~~~~~~~--~~-~~~~ 297 (359)
+|..+ .+++.....+..+. ...+.+.++.++.++ +.+.|++.++..+++.++. +..-++..... .. .+.-
T Consensus 151 ~G~v~-~v~E~~~da~TaisGSgPAyv~~~iEal~~a---gv~~Gl~~~~A~~l~~~t~~Gaakll~e~~~~p~~Lr~~V 226 (266)
T COG0345 151 VGKVV-EVEESLMDAVTALSGSGPAYVFLFIEALADA---GVRLGLPREEARELAAQTVAGAAKLLLESGEHPAELRDQV 226 (266)
T ss_pred cCCeE-EechHHhhHHHHHhcCCHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhC
Confidence 99855 45443322222222 234444444333333 5899999999999998864 33344444333 12 2233
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCC
Q 018213 298 YPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHG 342 (359)
Q Consensus 298 ~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g 342 (359)
.+|+.+...+ ++..++.|+..-+.+++.+.++++.+.|
T Consensus 227 tSPGGtTiag-------l~~le~~g~~~~v~~av~aa~~r~~el~ 264 (266)
T COG0345 227 TSPGGTTIAG-------LRVLEEDGFRGAVIEAVEAAYKRSEELG 264 (266)
T ss_pred cCCCchHHHH-------HHHHHHhChHHHHHHHHHHHHHHHHHhc
Confidence 4566554444 4455688899999999999988887764
No 81
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.75 E-value=1.4e-16 Score=142.96 Aligned_cols=244 Identities=16% Similarity=0.163 Sum_probs=159.1
Q ss_pred CeEEEEcCChhhHHHHHHHHHCCCc---EEEEcCCccchhHHHhC--CCccCCCHHHHhhcCCEEEEeeCChhHHHHHhc
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKAGCD---VTVWNRTKSKCDPLISL--GAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 146 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~g~~---V~~~d~~~~~~~~~~~~--g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~ 146 (359)
|+|||||+|+||+++++.|...|++ +.+|+|++++.+.+.+. ++..+.+.+++++++|+|++|+| +.....++
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~-p~~~~~vl- 78 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVR-PQIAEEVL- 78 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeC-HHHHHHHH-
Confidence 4799999999999999999998864 57899998877776654 46677789999999999999997 78888888
Q ss_pred ccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHHHHHHHHHHHHHhCC
Q 018213 147 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGK 226 (359)
Q Consensus 147 ~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ll~~lg~ 226 (359)
+++ .+++++++|+++ .....+.+.+.+......+..+|+.... ...+. ..++.++ +.++++|+.+|.
T Consensus 79 --~~l--~~~~~~~vis~~--ag~~~~~l~~~~~~~~~~~r~~P~~~~a--~~~g~-t~~~~~~----~~~~~l~~~lG~ 145 (258)
T PRK06476 79 --RAL--RFRPGQTVISVI--AATDRAALLEWIGHDVKLVRAIPLPFVA--ERKGV-TAIYPPD----PFVAALFDALGT 145 (258)
T ss_pred --HHh--ccCCCCEEEEEC--CCCCHHHHHHHhCCCCCEEEECCCChhh--hCCCC-eEecCCH----HHHHHHHHhcCC
Confidence 554 256888999865 3445556777665443445556653222 12222 2334432 589999999998
Q ss_pred CeEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcccc-chh-hhhc--ccc-cccCCCCCC
Q 018213 227 SRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAIS-APM-YSLK--GPS-MIESLYPTA 301 (359)
Q Consensus 227 ~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~-s~~-~~~~--~~~-~~~~~~~~~ 301 (359)
.++ +.+.........+.. +.+.++..+.++...+++.|+++++..+++...... ..+ .... .+. +.+.-..|+
T Consensus 146 ~~~-~~~e~~~d~~~a~~s-~~a~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~G~~~l~~~~~~~~~~~l~~~v~spg 223 (258)
T PRK06476 146 AVE-CDSEEEYDLLAAASA-LMATYFGILETATGWLEEQGLKRQKARAYLAPLFASLAQDAVRSTKTDFSALSREFSTKG 223 (258)
T ss_pred cEE-ECChHhccceeehhc-cHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhCCCCC
Confidence 776 443221122211222 333344567788889999999999999998865322 222 1111 111 122223454
Q ss_pred cchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 018213 302 FPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAK 339 (359)
Q Consensus 302 ~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~ 339 (359)
.+... .++..++.|+.-.+.+++.+.++++.
T Consensus 224 GtT~~-------gl~~le~~~~~~~~~~a~~aa~~r~~ 254 (258)
T PRK06476 224 GLNEQ-------VLNDFSRQGGYAALTDALDRVLRRIN 254 (258)
T ss_pred chHHH-------HHHHHHHCChHHHHHHHHHHHHHHhh
Confidence 43333 35567778887777777777666653
No 82
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.74 E-value=7.9e-17 Score=146.18 Aligned_cols=193 Identities=17% Similarity=0.201 Sum_probs=140.4
Q ss_pred CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhH-----------HHhCC-------------CccCCCHHHHhhc
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDP-----------LISLG-------------AKYQPSPDEVAAS 127 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~-----------~~~~g-------------~~~~~~~~~~~~~ 127 (359)
++|||||+|.||..+|..++..|++|++||++++..+. +.+.| +..++++ +.+++
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~ 84 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFAD 84 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCC
Confidence 47999999999999999999999999999999887654 22233 2256677 45789
Q ss_pred CCEEEEeeCChhHHHHHhcccccccccC-CCCCEEEeccCCChHHHHHHHHHHHhc--CCeeec-CCCCCCCccccCCce
Q 018213 128 CDVTFAMLADPESAMDVACGKHGAASGM-GPGKGYVDVSTVDGDTSKLINGHIKAT--GASFLE-APVSGSKKPAEDGQL 203 (359)
Q Consensus 128 aDivi~~~p~~~~~~~~~~~~~~~~~~l-~~~~~vi~~s~~~~~~~~~l~~~l~~~--~~~~~~-~~~~~~~~~~~~~~~ 203 (359)
||+||.|+|++.+++..+| ..+...+ ++++++++.+++.+....+.....+++ +++|++ ++++... .+
T Consensus 85 ~d~ViEav~E~~~~K~~l~--~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lv------El 156 (286)
T PRK07819 85 RQLVIEAVVEDEAVKTEIF--AELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLV------EL 156 (286)
T ss_pred CCEEEEecccCHHHHHHHH--HHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceE------EE
Confidence 9999999999999998885 4444445 789999988777776654432222233 555555 2332221 22
Q ss_pred EEEecCCHHHHHHHHHHHH-HhCCCeEEeCc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccc
Q 018213 204 IFLAAGDKSLYNTVAPLLD-IMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAI 281 (359)
Q Consensus 204 ~~~~~g~~~~~~~v~~ll~-~lg~~~~~~g~-~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~ 281 (359)
+....++++.++++.+++. .+|+.++.+++ +| ++.|-+.. ..++|++.+.++...++++++.++..+.+
T Consensus 157 v~~~~T~~~~~~~~~~~~~~~lgk~pv~v~d~pG------fi~nRi~~---~~~~Ea~~ll~eGv~~~~dID~~~~~g~G 227 (286)
T PRK07819 157 VPTLVTSEATVARAEEFASDVLGKQVVRAQDRSG------FVVNALLV---PYLLSAIRMVESGFATAEDIDKAMVLGCA 227 (286)
T ss_pred eCCCCCCHHHHHHHHHHHHHhCCCCceEecCCCC------hHHHHHHH---HHHHHHHHHHHhCCCCHHHHHHHHHhCCC
Confidence 2233458999999999988 59999999988 76 44444433 44679999988866789999999876654
Q ss_pred c
Q 018213 282 S 282 (359)
Q Consensus 282 ~ 282 (359)
.
T Consensus 228 ~ 228 (286)
T PRK07819 228 H 228 (286)
T ss_pred C
Confidence 4
No 83
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.73 E-value=1.2e-15 Score=136.63 Aligned_cols=169 Identities=21% Similarity=0.320 Sum_probs=130.5
Q ss_pred CCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccc--hhHHHhCCCcc--CCCH-HHHhhcCCEEEEeeCChhHHHHHh
Q 018213 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK--CDPLISLGAKY--QPSP-DEVAASCDVTFAMLADPESAMDVA 145 (359)
Q Consensus 71 ~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~--~~~~~~~g~~~--~~~~-~~~~~~aDivi~~~p~~~~~~~~~ 145 (359)
.++|+|+|+|.||+.+|+.|+..|+.|.+++++... .+...+.|+.. ..+. .+.+.++|+||+++| -..+..++
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavP-i~~~~~~l 81 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVP-IEATEEVL 81 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEecc-HHHHHHHH
Confidence 378999999999999999999999988777665543 23333334422 1222 566778999999998 77899999
Q ss_pred cccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec-CCCCCC--CccccCCceEEEecC---CHHHHHHHHH
Q 018213 146 CGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGS--KKPAEDGQLIFLAAG---DKSLYNTVAP 219 (359)
Q Consensus 146 ~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~g---~~~~~~~v~~ 219 (359)
+++.+.+++|++|+|+++.+....+++.+.+.+.. .|++ ||++|+ ......+..++++.. +.+.++.+.+
T Consensus 82 ---~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~-~~vg~HPM~G~~~~~~lf~~~~~vltp~~~~~~~~~~~~~~ 157 (279)
T COG0287 82 ---KELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV-RFVGGHPMFGPEADAGLFENAVVVLTPSEGTEKEWVEEVKR 157 (279)
T ss_pred ---HHhcccCCCCCEEEecccccHHHHHHHHHhccCCC-eeEecCCCCCCcccccccCCCEEEEcCCCCCCHHHHHHHHH
Confidence 88888999999999999999888888877776555 8887 999998 344455666666665 4567889999
Q ss_pred HHHHhCCCeEEeCccChHHHHHHHH
Q 018213 220 LLDIMGKSRFYLGDVGNGAAMKLVV 244 (359)
Q Consensus 220 ll~~lg~~~~~~g~~~~~~~~kl~~ 244 (359)
+++.+|.+++.+....+...+..++
T Consensus 158 ~~~~~ga~~v~~~~eeHD~~~a~vs 182 (279)
T COG0287 158 LWEALGARLVEMDAEEHDRVMAAVS 182 (279)
T ss_pred HHHHcCCEEEEcChHHHhHHHHHHH
Confidence 9999999998888876555554443
No 84
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.73 E-value=2.5e-16 Score=144.23 Aligned_cols=188 Identities=18% Similarity=0.247 Sum_probs=135.8
Q ss_pred CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhH-----------HHhCC-------------CccCCCHHHHhhc
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDP-----------LISLG-------------AKYQPSPDEVAAS 127 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~-----------~~~~g-------------~~~~~~~~~~~~~ 127 (359)
++|+|||+|.||..+|..|+..|++|++||++++..+. +.+.| ....++. +.+++
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~ 83 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNL-EELRD 83 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCH-HHhCC
Confidence 67999999999999999999999999999999876542 22222 2233344 56799
Q ss_pred CCEEEEeeCChhHHHHHhcccccccccCCCCCEEE-eccCCChHHHHHHHHHHHh----cCCeeecCCCCCCCccccCCc
Q 018213 128 CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV-DVSTVDGDTSKLINGHIKA----TGASFLEAPVSGSKKPAEDGQ 202 (359)
Q Consensus 128 aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi-~~s~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~~~~~~ 202 (359)
||+||+|+|.+.+.+..++ .++.+.++++++|+ |+|+..+. .+.+.+.. .+++++++|... .
T Consensus 84 aD~Vieav~e~~~~k~~v~--~~l~~~~~~~~il~s~tS~i~~~---~l~~~~~~~~r~~g~h~~~pp~~~--------~ 150 (295)
T PLN02545 84 ADFIIEAIVESEDLKKKLF--SELDRICKPSAILASNTSSISIT---RLASATQRPQQVIGMHFMNPPPIM--------K 150 (295)
T ss_pred CCEEEEcCccCHHHHHHHH--HHHHhhCCCCcEEEECCCCCCHH---HHHhhcCCCcceEEEeccCCcccC--------c
Confidence 9999999998899888774 55666788888887 66666544 34444432 244555555432 3
Q ss_pred eEEEec---CCHHHHHHHHHHHHHhCCCeEEeCc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhh
Q 018213 203 LIFLAA---GDKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQ 278 (359)
Q Consensus 203 ~~~~~~---g~~~~~~~v~~ll~~lg~~~~~~g~-~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~ 278 (359)
.+.++. ++++.++.+.++++.+|+.++++++ +| .+.|-+. ...++|++.+.++...++++++..+..
T Consensus 151 lveiv~g~~t~~e~~~~~~~ll~~lG~~~~~~~d~~g------~i~nri~---~~~~~ea~~~~~~gv~~~~~iD~~~~~ 221 (295)
T PLN02545 151 LVEIIRGADTSDEVFDATKALAERFGKTVVCSQDYPG------FIVNRIL---MPMINEAFYALYTGVASKEDIDTGMKL 221 (295)
T ss_pred eEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEecCccc------HHHHHHH---HHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 344554 3899999999999999999999888 55 2333333 334679999988877889999988776
Q ss_pred cccc
Q 018213 279 GAIS 282 (359)
Q Consensus 279 ~~~~ 282 (359)
+.+.
T Consensus 222 g~g~ 225 (295)
T PLN02545 222 GTNH 225 (295)
T ss_pred ccCC
Confidence 5443
No 85
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.72 E-value=7.7e-16 Score=144.40 Aligned_cols=196 Identities=19% Similarity=0.253 Sum_probs=140.1
Q ss_pred CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCc----cCCCHHHHhhcCCEEEEeeCChhHHHHHhcc
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK----YQPSPDEVAASCDVTFAMLADPESAMDVACG 147 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~----~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~ 147 (359)
++|+|||+|.||.++|+.|.+.|++|.+|+++++........+.. ...++++++++||+||+|+| +..+..++
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP-~~~~~~vl-- 77 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVP-VDATAALL-- 77 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCC-HHHHHHHH--
Confidence 369999999999999999999999999999887654433333322 23467788899999999998 56788888
Q ss_pred cccccc-cCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec-CCCCCCCc--------cccCCceEEEec---CCHHHH
Q 018213 148 KHGAAS-GMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKK--------PAEDGQLIFLAA---GDKSLY 214 (359)
Q Consensus 148 ~~~~~~-~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~~~---g~~~~~ 214 (359)
+++.+ .++++.+|.|+++.+....+.+.+.+ ..+..|++ +|+.|++. ....+..++++. .+++.+
T Consensus 78 -~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~-~~~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~~~~~~ 155 (359)
T PRK06545 78 -AELADLELKPGVIVTDVGSVKGAILAEAEALL-GDLIRFVGGHPMAGSHKSGVAAARADLFENAPWVLTPDDHTDPDAV 155 (359)
T ss_pred -HHHhhcCCCCCcEEEeCccccHHHHHHHHHhc-CCCCeEEeeCCcCcCchhhHHHhcHHHHCCCcEEEecCCCCCHHHH
Confidence 77766 47899999999999887666665543 34668888 89888752 223445455555 378889
Q ss_pred HHHHHHHHHhCCCeEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 018213 215 NTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQG 279 (359)
Q Consensus 215 ~~v~~ll~~lg~~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~ 279 (359)
+.+.++++.+|..++.+++..+.....+++..-- .+ ++++ +...+.+.+....+...+
T Consensus 156 ~~v~~l~~~lGa~~v~~~~~~HD~~~A~vshlPh-~i----a~al--~~~~~~~~~~~~~la~~g 213 (359)
T PRK06545 156 AELKDLLSGTGAKFVVLDAEEHDRAVALVSHLPH-IL----ASSL--AARLAGEHPLALRLAAGG 213 (359)
T ss_pred HHHHHHHHHcCCEEEECCHHHHhHHHhHhccHHH-HH----HHHH--HHhhccCchHHHhhhccc
Confidence 9999999999999988887665666655544322 22 1222 445555555555555543
No 86
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.72 E-value=7.2e-16 Score=142.29 Aligned_cols=193 Identities=15% Similarity=0.146 Sum_probs=136.6
Q ss_pred CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC-----C--------------CccCCCHHHHhhcCCEEE
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-----G--------------AKYQPSPDEVAASCDVTF 132 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-----g--------------~~~~~~~~~~~~~aDivi 132 (359)
++|+|||+|.||..+|..|+..|++|++||++++..+.+.+. + +....+.++++++||+|+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi 84 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVI 84 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEE
Confidence 679999999999999999999999999999988766554331 1 234567778889999999
Q ss_pred EeeCChhHH-HHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecC--
Q 018213 133 AMLADPESA-MDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAG-- 209 (359)
Q Consensus 133 ~~~p~~~~~-~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-- 209 (359)
+|+|...+. ..++ .++...++++++|+..+.+.+ ...+.+.+.. ..+++....+.++.. ...+.++.+
T Consensus 85 ~av~~~~~~~~~v~---~~l~~~~~~~~ii~s~tsg~~--~~~l~~~~~~-~~~~ig~h~~~p~~~---~~l~~i~~g~~ 155 (311)
T PRK06130 85 EAVPEKLELKRDVF---ARLDGLCDPDTIFATNTSGLP--ITAIAQAVTR-PERFVGTHFFTPADV---IPLVEVVRGDK 155 (311)
T ss_pred EeccCcHHHHHHHH---HHHHHhCCCCcEEEECCCCCC--HHHHHhhcCC-cccEEEEccCCCCcc---CceEEEeCCCC
Confidence 999866544 4455 555555666766654444433 3366666532 223444333332221 123344444
Q ss_pred -CHHHHHHHHHHHHHhCCCeEEeCc--cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcccc
Q 018213 210 -DKSLYNTVAPLLDIMGKSRFYLGD--VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAIS 282 (359)
Q Consensus 210 -~~~~~~~v~~ll~~lg~~~~~~g~--~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~ 282 (359)
+++.++.+.++++.+|..++.++. +|. +++|.+ ...++|++.++++.|++++++++++..+.+.
T Consensus 156 t~~~~~~~v~~l~~~~G~~~v~~~~d~~G~-----i~nr~~----~~~~~Ea~~l~~~g~~~~~~id~~~~~~~g~ 222 (311)
T PRK06130 156 TSPQTVATTMALLRSIGKRPVLVKKDIPGF-----IANRIQ----HALAREAISLLEKGVASAEDIDEVVKWSLGI 222 (311)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEcCCCCCc-----HHHHHH----HHHHHHHHHHHHcCCCCHHHHHHHHHhcCCC
Confidence 689999999999999999998874 552 444443 3568899999999999999999999876554
No 87
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.71 E-value=3e-15 Score=137.78 Aligned_cols=173 Identities=17% Similarity=0.321 Sum_probs=129.2
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCC--cEEEEcCCccchhHHHhCCC--ccCCCHHHHhhcCCEEEEeeCChhHHHHH
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLISLGA--KYQPSPDEVAASCDVTFAMLADPESAMDV 144 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~--~V~~~d~~~~~~~~~~~~g~--~~~~~~~~~~~~aDivi~~~p~~~~~~~~ 144 (359)
+..++|+|||+|.||..++..|...|+ +|++|||+++..+.+.+.|. ....+.++.++++|+||+|+| +..+..+
T Consensus 4 ~~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp-~~~~~~v 82 (307)
T PRK07502 4 PLFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVP-VGASGAV 82 (307)
T ss_pred cCCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCC-HHHHHHH
Confidence 344789999999999999999999885 89999999887776666664 234577788899999999998 5566777
Q ss_pred hcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec-CCCCCCCcc-c-------cCCceEEEe---cCCHH
Q 018213 145 ACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKP-A-------EDGQLIFLA---AGDKS 212 (359)
Q Consensus 145 ~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~-~-------~~~~~~~~~---~g~~~ 212 (359)
+ +++.+.++++.+|+++++......+.+.+.+ ..++++++ +|+.|++.. . ..+..++++ +++++
T Consensus 83 ~---~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~-~~~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~~~~ 158 (307)
T PRK07502 83 A---AEIAPHLKPGAIVTDVGSVKASVIAAMAPHL-PEGVHFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGTDPA 158 (307)
T ss_pred H---HHHHhhCCCCCEEEeCccchHHHHHHHHHhC-CCCCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCCCHH
Confidence 7 6677778899999999888766665555544 24667887 688875531 1 123333343 34788
Q ss_pred HHHHHHHHHHHhCCCeEEeCccChHHHHHHHHHH
Q 018213 213 LYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNM 246 (359)
Q Consensus 213 ~~~~v~~ll~~lg~~~~~~g~~~~~~~~kl~~n~ 246 (359)
.++.+.++++.+|.+++.+++..+.....++...
T Consensus 159 ~~~~~~~l~~~lG~~~~~~~~~~hD~~~A~~s~l 192 (307)
T PRK07502 159 AVARLTAFWRALGARVEEMDPEHHDLVLAITSHL 192 (307)
T ss_pred HHHHHHHHHHHcCCEEEEcCHHHHhHHHHHHhhH
Confidence 8999999999999999888876656555555443
No 88
>PRK07680 late competence protein ComER; Validated
Probab=99.71 E-value=1.1e-15 Score=138.43 Aligned_cols=195 Identities=16% Similarity=0.241 Sum_probs=135.8
Q ss_pred CeEEEEcCChhhHHHHHHHHHCCC----cEEEEcCCccchhHHHhC--CCccCCCHHHHhhcCCEEEEeeCChhHHHHHh
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKAGC----DVTVWNRTKSKCDPLISL--GAKYQPSPDEVAASCDVTFAMLADPESAMDVA 145 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~g~----~V~~~d~~~~~~~~~~~~--g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~ 145 (359)
|+|+|||+|+||.++++.|.+.|+ +|.+|+|++++.+.+.+. ++....+..+++.++|+|++++| +..+..++
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~-p~~~~~vl 79 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVK-PLDIYPLL 79 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecC-HHHHHHHH
Confidence 479999999999999999999883 799999998777666553 56677788888999999999995 88899998
Q ss_pred cccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEec--CCHHHHHHHHHHHHH
Q 018213 146 CGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAA--GDKSLYNTVAPLLDI 223 (359)
Q Consensus 146 ~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~v~~ll~~ 223 (359)
+++.+.++++++||+++.+. ..+.+.+.+....+++++. .+.....+...+..+ .+.+..+.++++|+.
T Consensus 80 ---~~l~~~l~~~~~iis~~ag~--~~~~L~~~~~~~~~r~~p~----~~~~~~~G~t~~~~g~~~~~~~~~~~~~ll~~ 150 (273)
T PRK07680 80 ---QKLAPHLTDEHCLVSITSPI--SVEQLETLVPCQVARIIPS----ITNRALSGASLFTFGSRCSEEDQQKLERLFSN 150 (273)
T ss_pred ---HHHHhhcCCCCEEEEECCCC--CHHHHHHHcCCCEEEECCC----hHHHHhhccEEEeeCCCCCHHHHHHHHHHHHc
Confidence 77777788889999998654 4556666654333344431 112233455544444 366778899999999
Q ss_pred hCCCeEEeCccChHHHHHH--HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 018213 224 MGKSRFYLGDVGNGAAMKL--VVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQG 279 (359)
Q Consensus 224 lg~~~~~~g~~~~~~~~kl--~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~ 279 (359)
+|. ++.+.+........+ +...+...++.++.++. .++.|++.++..+++...
T Consensus 151 ~G~-~~~i~e~~~~~~~~l~gs~pa~~~~~~~al~~~~--~~~~Gl~~~~a~~~~~~~ 205 (273)
T PRK07680 151 IST-PLVIEEDITRVSSDIVSCGPAFFSYLLQRFIDAA--VEETNISKEEATTLASEM 205 (273)
T ss_pred CCC-EEEEChHhcchhhhhccchHHHHHHHHHHHHHHH--HHhcCCCHHHHHHHHHHH
Confidence 995 455554211111222 23345555555455543 244899999999988765
No 89
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.71 E-value=1.1e-15 Score=139.78 Aligned_cols=188 Identities=16% Similarity=0.233 Sum_probs=133.0
Q ss_pred CCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHh-----------CC-------------CccCCCHHHHhh
Q 018213 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-----------LG-------------AKYQPSPDEVAA 126 (359)
Q Consensus 71 ~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~-----------~g-------------~~~~~~~~~~~~ 126 (359)
-++|+|||+|.||..+|..|+..|++|++||++++..+...+ .| +...++++ .++
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~ 82 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLA 82 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-Hhc
Confidence 367999999999999999999999999999999876654321 12 34455665 468
Q ss_pred cCCEEEEeeCChhHHHHHhcccccccccCCCCCEEE-eccCCChHHHHHHHHHHHhc----CCeeec-CCCCCCCccccC
Q 018213 127 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV-DVSTVDGDTSKLINGHIKAT----GASFLE-APVSGSKKPAED 200 (359)
Q Consensus 127 ~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi-~~s~~~~~~~~~l~~~l~~~----~~~~~~-~~~~~~~~~~~~ 200 (359)
+||+||+|+|...+.+..++ +++.+.++++++++ |+|+..+. .+.+.+... ++++++ +++..
T Consensus 83 ~aD~Vieavpe~~~~k~~~~--~~l~~~~~~~~ii~s~ts~~~~s---~la~~~~~~~r~~g~h~~~p~~~~~------- 150 (292)
T PRK07530 83 DCDLVIEAATEDETVKRKIF--AQLCPVLKPEAILATNTSSISIT---RLASATDRPERFIGIHFMNPVPVMK------- 150 (292)
T ss_pred CCCEEEEcCcCCHHHHHHHH--HHHHhhCCCCcEEEEcCCCCCHH---HHHhhcCCcccEEEeeccCCcccCc-------
Confidence 99999999998777666553 56777788999888 44444432 566655321 445555 22221
Q ss_pred CceEEE--ecCCHHHHHHHHHHHHHhCCCeEEeCc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 018213 201 GQLIFL--AAGDKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVS 277 (359)
Q Consensus 201 ~~~~~~--~~g~~~~~~~v~~ll~~lg~~~~~~g~-~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~ 277 (359)
. .-++ .+++++.++.+.++++.+|+.++++++ +| +++++.+ ...+.|++.+..+.-.++++++.++.
T Consensus 151 ~-vei~~g~~t~~~~~~~~~~~~~~~gk~~v~~~d~pg-----~i~nRl~----~~~~~ea~~~~~~g~~~~~~iD~~~~ 220 (292)
T PRK07530 151 L-VELIRGIATDEATFEAAKEFVTKLGKTITVAEDFPA-----FIVNRIL----LPMINEAIYTLYEGVGSVEAIDTAMK 220 (292)
T ss_pred e-EEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCcCC-----hHHHHHH----HHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 1 1122 246899999999999999999999888 44 3444443 33456998888885558999999887
Q ss_pred hccc
Q 018213 278 QGAI 281 (359)
Q Consensus 278 ~~~~ 281 (359)
.+.+
T Consensus 221 ~g~g 224 (292)
T PRK07530 221 LGAN 224 (292)
T ss_pred hCCC
Confidence 5543
No 90
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=99.70 E-value=7e-16 Score=141.54 Aligned_cols=259 Identities=15% Similarity=0.072 Sum_probs=168.6
Q ss_pred CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC-CCccC-----------CCHHHHhhcCCEEEEeeCChh
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-GAKYQ-----------PSPDEVAASCDVTFAMLADPE 139 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-g~~~~-----------~~~~~~~~~aDivi~~~p~~~ 139 (359)
|||+|+|+|.||+.+|..|++.|++|++++|+.++.+.+.+. |+... ....+.....|+|++|+ +..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~v-K~~ 81 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLAC-KAY 81 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEEC-CHH
Confidence 789999999999999999999999999999987666666543 33211 01112235789999999 788
Q ss_pred HHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhc----CCeeecCCCCCCCccccCCceEEEec-CCHHHH
Q 018213 140 SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT----GASFLEAPVSGSKKPAEDGQLIFLAA-GDKSLY 214 (359)
Q Consensus 140 ~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~ 214 (359)
++...+ +.+.+.+.+++.++-+-+|-.. .+.+.+.+... ++.++++...++-.....+...+..+ .+.+..
T Consensus 82 ~~~~al---~~l~~~l~~~t~vv~lQNGv~~-~e~l~~~~~~~~v~~g~~~~ga~~~~pg~v~~~~~g~~~~G~~~~~~~ 157 (305)
T PRK05708 82 DAEPAV---ASLAHRLAPGAELLLLQNGLGS-QDAVAARVPHARCIFASSTEGAFRDGDWRVVFAGHGFTWLGDPRNPTA 157 (305)
T ss_pred hHHHHH---HHHHhhCCCCCEEEEEeCCCCC-HHHHHHhCCCCcEEEEEeeeceecCCCCEEEEeceEEEEEcCCCCcch
Confidence 999998 8888889899988888776543 33455555432 22223222222111111222112233 233455
Q ss_pred HHHHHHHHHhCCCeEEeCccChHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHcCCCH--HHHHH
Q 018213 215 NTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGS------------------MMATFSEGLLHSEKVGLDP--NVLVE 274 (359)
Q Consensus 215 ~~v~~ll~~lg~~~~~~g~~~~~~~~kl~~n~~~~~------------------~~~~~~Ea~~l~~~~Gi~~--~~~~~ 274 (359)
+.+.++|...|..+....++....|.|++.|...+. +..++.|...++++.|++. +.+.+
T Consensus 158 ~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~~l~~E~~~va~a~G~~~~~~~~~~ 237 (305)
T PRK05708 158 PAWLDDLREAGIPHEWTVDILTRLWRKLALNCAINPLTVLHDCRNGGLLEHAQEVAALCAELSELLRRCGQPAAAANLHE 237 (305)
T ss_pred HHHHHHHHhcCCCCccCHHHHHHHHHHHHHHccccHhHHhhCCCCcchhcCHHHHHHHHHHHHHHHHHcCCCccHHHHHH
Confidence 777888888888777777888899999998875543 3456789999999999752 33333
Q ss_pred HHhhccccchhhhhcccccccCCCCC-CcchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHC
Q 018213 275 VVSQGAISAPMYSLKGPSMIESLYPT-AFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSH 341 (359)
Q Consensus 275 ~~~~~~~~s~~~~~~~~~~~~~~~~~-~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~ 341 (359)
.+...... .....++|.++-... ...++.. .+.++++++++|+|+|.+++++++++....+
T Consensus 238 ~~~~~~~~---~~~~~sSM~qD~~~gR~tEid~i---~G~vvr~a~~~Gv~~P~~~~l~~~v~~~~~~ 299 (305)
T PRK05708 238 EVQRVIQA---TAANYSSMYQDVRAGRRTEISYL---LGYACRAADRHGLPLPRLQHLQQRLVAHLRA 299 (305)
T ss_pred HHHHHHHh---ccCCCcHHHHHHHcCCceeehhh---hhHHHHHHHHcCCCCchHHHHHHHHHHHHHh
Confidence 33211000 001123343321111 1234555 6889999999999999999999888877754
No 91
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=99.70 E-value=1.4e-15 Score=138.91 Aligned_cols=258 Identities=20% Similarity=0.230 Sum_probs=176.9
Q ss_pred CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCcc------------CCCHHHHhhcCCEEEEeeCChh
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY------------QPSPDEVAASCDVTFAMLADPE 139 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~------------~~~~~~~~~~aDivi~~~p~~~ 139 (359)
|||.|+|+|.||+.++..|++.|++|+++.|++. .+.+.+.|... .....+.+..+|+||+++ ++.
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~v-Ka~ 78 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTV-KAY 78 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEe-ccc
Confidence 6899999999999999999999999999988764 67777655322 112234456899999999 899
Q ss_pred HHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhc----CCeeecCCCCCCCccccC--CceEE--EecCCH
Q 018213 140 SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT----GASFLEAPVSGSKKPAED--GQLIF--LAAGDK 211 (359)
Q Consensus 140 ~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~~~~--~~~~~--~~~g~~ 211 (359)
++..++ +.+.+.+++.+.|+-.-+|....+ .+.+..... |+...++-..+....... +...+ ..++.+
T Consensus 79 q~~~al---~~l~~~~~~~t~vl~lqNG~g~~e-~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~~ 154 (307)
T COG1893 79 QLEEAL---PSLAPLLGPNTVVLFLQNGLGHEE-ELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVIGELRGGRD 154 (307)
T ss_pred cHHHHH---HHhhhcCCCCcEEEEEeCCCcHHH-HHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEEccCCCCch
Confidence 999999 899999999998888877766655 666666544 222222211111111111 22221 112244
Q ss_pred HHHHHHHHHHHHhCCCeEEeCccChHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHcCC--C
Q 018213 212 SLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGS---------------------MMATFSEGLLHSEKVGL--D 268 (359)
Q Consensus 212 ~~~~~v~~ll~~lg~~~~~~g~~~~~~~~kl~~n~~~~~---------------------~~~~~~Ea~~l~~~~Gi--~ 268 (359)
+..+.+.++|+..+..+.+..++....|.|++.|..++. +...+.|...++.+.|+ +
T Consensus 155 ~~~~~i~~~~~~a~~~~~~~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~~~~~~~l~~~~~~E~~~v~~~~g~~~~ 234 (307)
T COG1893 155 ELVKALAELFKEAGLEVELHPDILAAIWRKLVVNAAINPLTALLDCNNGELLENPEARALIRALVAEVVAVARAEGVELP 234 (307)
T ss_pred HHHHHHHHHHHhCCCCeEEcHHHHHHHHHHHHhhhccchhhhhhcCCchHHhcChhHHHHHHHHHHHHHHHHHhccCCCC
Confidence 778888899999999998888888899999999987774 34577899999999994 4
Q ss_pred HHHHHHHHhhccccchhhhhcccccccCCCCCC-cchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHC
Q 018213 269 PNVLVEVVSQGAISAPMYSLKGPSMIESLYPTA-FPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSH 341 (359)
Q Consensus 269 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~-~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~ 341 (359)
.+.+..+........ ....++|.++-...+ ..++.. .+.+++.++++|+++|++++++++++.....
T Consensus 235 ~~~~~~v~~~~~~~~---~~~~sSM~qDl~~gr~tEid~i---~G~vv~~a~~~gi~~P~~~~L~~lvk~~e~~ 302 (307)
T COG1893 235 EEVVERVLAVIRATD---AENYSSMLQDLEKGRPTEIDAI---NGAVVRLAKKHGLATPVNDTLYALLKAKEAE 302 (307)
T ss_pred HHHHHHHHHHHHhcc---cccCchHHHHHHcCCcccHHHH---hhHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 533333333211010 011223333222111 235555 6889999999999999999999999988765
No 92
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.70 E-value=1.4e-15 Score=138.61 Aligned_cols=194 Identities=13% Similarity=0.134 Sum_probs=136.8
Q ss_pred CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHh-------------------------CCCccCCCHHHHhh
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-------------------------LGAKYQPSPDEVAA 126 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~-------------------------~g~~~~~~~~~~~~ 126 (359)
++|+|||+|.||..+|..++..|++|++||++++..+...+ .++..+++++++++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~ 83 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK 83 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc
Confidence 67999999999999999999999999999998765443321 12345678888889
Q ss_pred cCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEE
Q 018213 127 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFL 206 (359)
Q Consensus 127 ~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (359)
+||+||+|+|...+.+..++ +++.+.++++++|++.+++.+. ..+.+.+. ..-+++..+.+.+.. ..+.+.+
T Consensus 84 ~aDlVieavpe~~~~k~~~~--~~l~~~~~~~~ii~sntSt~~~--~~~~~~~~-~~~r~vg~Hf~~p~~---~~~lvev 155 (287)
T PRK08293 84 DADLVIEAVPEDPEIKGDFY--EELAKVAPEKTIFATNSSTLLP--SQFAEATG-RPEKFLALHFANEIW---KNNTAEI 155 (287)
T ss_pred CCCEEEEeccCCHHHHHHHH--HHHHhhCCCCCEEEECcccCCH--HHHHhhcC-CcccEEEEcCCCCCC---cCCeEEE
Confidence 99999999997766655442 6666778888888544444332 24555443 233566644333322 2244444
Q ss_pred ec---CCHHHHHHHHHHHHHhCCCeEEeC-c-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccc
Q 018213 207 AA---GDKSLYNTVAPLLDIMGKSRFYLG-D-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAI 281 (359)
Q Consensus 207 ~~---g~~~~~~~v~~ll~~lg~~~~~~g-~-~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~ 281 (359)
+. .+++.++.+.++++.+|+.++.+. + +| .+.|-+.. ..++|++.+.++...++++++.++..+.+
T Consensus 156 v~~~~t~~~~~~~~~~~~~~~Gk~pv~v~~d~pg------fi~nRi~~---~~~~ea~~l~~~g~a~~~~iD~a~~~~~g 226 (287)
T PRK08293 156 MGHPGTDPEVFDTVVAFAKAIGMVPIVLKKEQPG------YILNSLLV---PFLSAALALWAKGVADPETIDKTWMIATG 226 (287)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCeEEEecCCCCC------HhHHHHHH---HHHHHHHHHHHcCCCCHHHHHHHHHhccC
Confidence 43 488999999999999999988875 4 65 33343333 34679999988877899999999876654
Q ss_pred c
Q 018213 282 S 282 (359)
Q Consensus 282 ~ 282 (359)
.
T Consensus 227 ~ 227 (287)
T PRK08293 227 A 227 (287)
T ss_pred C
Confidence 3
No 93
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=99.70 E-value=9.1e-15 Score=130.16 Aligned_cols=157 Identities=14% Similarity=0.145 Sum_probs=119.3
Q ss_pred CeEEEEcCChh--------------------hHHHHHHHHHCCCcEEEEcCCccch-----hHHHhCCCccCCCHHHHhh
Q 018213 72 GRIGFLGMGIM--------------------GTPMAQNLLKAGCDVTVWNRTKSKC-----DPLISLGAKYQPSPDEVAA 126 (359)
Q Consensus 72 ~~igiiG~G~i--------------------G~~ia~~l~~~g~~V~~~d~~~~~~-----~~~~~~g~~~~~~~~~~~~ 126 (359)
|||.|.|+|+- |..+|++|.+.||+|++|||++++. +.+.+.|+..+++..++++
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa 80 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAK 80 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHh
Confidence 56788888875 8899999999999999999986543 3477779999999999999
Q ss_pred cCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHH---HHhcCCeeec-CCCCCCCccccCCc
Q 018213 127 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGH---IKATGASFLE-APVSGSKKPAEDGQ 202 (359)
Q Consensus 127 ~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~---l~~~~~~~~~-~~~~~~~~~~~~~~ 202 (359)
++|+||+|+|.+.+++.++ ..+++.+++|+++||+|+.+|.....+.+. +++..+.+.. || +..|......
T Consensus 81 ~ADVVIL~LPd~aaV~eVl---~GLaa~L~~GaIVID~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP--~~vP~~~~~~ 155 (341)
T TIGR01724 81 HGEIHVLFTPFGKGTFSIA---RTIIEHVPENAVICNTCTVSPVVLYYSLEKILRLKRTDVGISSMHP--AAVPGTPQHG 155 (341)
T ss_pred CCCEEEEecCCHHHHHHHH---HHHHhcCCCCCEEEECCCCCHHHHHHHHHHHhhcCccccCeeccCC--CCCCCCCCCc
Confidence 9999999999999999998 678888999999999999999877666655 3333333332 22 1122222222
Q ss_pred eEEEecC--------CHHHHHHHHHHHHHhCCCeEEeCc
Q 018213 203 LIFLAAG--------DKSLYNTVAPLLDIMGKSRFYLGD 233 (359)
Q Consensus 203 ~~~~~~g--------~~~~~~~v~~ll~~lg~~~~~~g~ 233 (359)
..++.+. ++|..+++.++.+..++.++.+..
T Consensus 156 ~~~~~~~~~~~~~~A~ee~i~~~~el~~~~~~~~~~~pa 194 (341)
T TIGR01724 156 HYVIGGKPTAGKEMATEEQISKCVELAKSTGKKAYVVPA 194 (341)
T ss_pred eeeeccccccccccCCHHHHHHHHHHHHHhCCCeeecch
Confidence 2222221 789999999999999999887754
No 94
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.68 E-value=1.4e-15 Score=138.92 Aligned_cols=192 Identities=17% Similarity=0.163 Sum_probs=132.1
Q ss_pred CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHh--------------CC-------------CccCCCHHHH
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS--------------LG-------------AKYQPSPDEV 124 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~--------------~g-------------~~~~~~~~~~ 124 (359)
++|+|||+|.||..+|..++..|++|++||++++..+...+ .| +...++. +.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 82 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES 82 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH
Confidence 57999999999999999999999999999999876543211 11 1233444 56
Q ss_pred hhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhc----CCeeec-CCCCCCCcccc
Q 018213 125 AASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT----GASFLE-APVSGSKKPAE 199 (359)
Q Consensus 125 ~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~----~~~~~~-~~~~~~~~~~~ 199 (359)
+++||+||+|+|...+.+..++ +++.+.+++++++++.+++. ....+.+.+... +++|+. +++.+... ..
T Consensus 83 ~~~aDlVieav~e~~~~k~~~~--~~l~~~~~~~~il~S~tsg~--~~~~la~~~~~~~r~ig~hf~~P~~~~~~vE-v~ 157 (291)
T PRK06035 83 LSDADFIVEAVPEKLDLKRKVF--AELERNVSPETIIASNTSGI--MIAEIATALERKDRFIGMHWFNPAPVMKLIE-VV 157 (291)
T ss_pred hCCCCEEEEcCcCcHHHHHHHH--HHHHhhCCCCeEEEEcCCCC--CHHHHHhhcCCcccEEEEecCCCcccCccEE-Ee
Confidence 7899999999997766555542 55666778888888555543 444566666432 444444 33332211 11
Q ss_pred CCceEEEecCCHHHHHHHHHHHHHhCCCeEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 018213 200 DGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQG 279 (359)
Q Consensus 200 ~~~~~~~~~g~~~~~~~v~~ll~~lg~~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~ 279 (359)
.+.. .+++.++.+.++++.+|+.++++++.+.....++..+ .+.|++.+.++.-.++++++.++..+
T Consensus 158 ~g~~-----T~~e~~~~~~~~~~~lgk~~v~v~d~pgfv~nRl~~~--------~~~ea~~~~~~g~a~~~~iD~~~~~~ 224 (291)
T PRK06035 158 RAAL-----TSEETFNTTVELSKKIGKIPIEVADVPGFFTTRFIEG--------WLLEAIRSFEIGIATIKDIDEMCKLA 224 (291)
T ss_pred CCCC-----CCHHHHHHHHHHHHHcCCeEEEeCCCCCeeHHHHHHH--------HHHHHHHHHHcCCCCHHHHHHHHhhc
Confidence 1111 2799999999999999999999988543555554443 34588888877446899999998765
Q ss_pred ccc
Q 018213 280 AIS 282 (359)
Q Consensus 280 ~~~ 282 (359)
.+.
T Consensus 225 ~g~ 227 (291)
T PRK06035 225 FGF 227 (291)
T ss_pred CCC
Confidence 443
No 95
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.68 E-value=5.3e-15 Score=134.53 Aligned_cols=192 Identities=17% Similarity=0.188 Sum_probs=133.3
Q ss_pred CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchh-----------HHHhCC-------------CccCCCHHHHhhc
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCD-----------PLISLG-------------AKYQPSPDEVAAS 127 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~-----------~~~~~g-------------~~~~~~~~~~~~~ 127 (359)
++|+|||+|.||..+|..++..|++|++||++++..+ .+.+.| +...++.++ +++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~-~~~ 82 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDD-LKD 82 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hcc
Confidence 5799999999999999999999999999999987763 222333 233556554 789
Q ss_pred CCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEe
Q 018213 128 CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLA 207 (359)
Q Consensus 128 aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (359)
||+|++|+|...+++..++ +++.+.++++++++..+++.+. ..+.+.+... -+++....+.+.+.. +.+.++
T Consensus 83 aDlVi~av~e~~~~k~~~~--~~l~~~~~~~~il~s~ts~~~~--~~la~~~~~~-~r~ig~h~~~P~~~~---~~vev~ 154 (282)
T PRK05808 83 ADLVIEAATENMDLKKKIF--AQLDEIAKPEAILATNTSSLSI--TELAAATKRP-DKVIGMHFFNPVPVM---KLVEII 154 (282)
T ss_pred CCeeeecccccHHHHHHHH--HHHHhhCCCCcEEEECCCCCCH--HHHHHhhCCC-cceEEeeccCCcccC---ccEEEe
Confidence 9999999988777774442 6677778889888544343332 3666666432 245543222222111 111223
Q ss_pred ---cCCHHHHHHHHHHHHHhCCCeEEeCc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccc
Q 018213 208 ---AGDKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAI 281 (359)
Q Consensus 208 ---~g~~~~~~~v~~ll~~lg~~~~~~g~-~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~ 281 (359)
+.+++..+.+.++++.+|+.++.+++ +| .+.|-+. ...++|+..+.++.-.++++++..+..+.+
T Consensus 155 ~g~~t~~e~~~~~~~l~~~lGk~pv~~~d~~g------~i~~Ri~---~~~~~ea~~~~~~gv~~~~diD~~~~~g~g 223 (282)
T PRK05808 155 RGLATSDATHEAVEALAKKIGKTPVEVKNAPG------FVVNRIL---IPMINEAIFVLAEGVATAEDIDEGMKLGCN 223 (282)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCeeEEecCccC------hHHHHHH---HHHHHHHHHHHHhCCCCHHHHHHHHHhCCC
Confidence 24899999999999999999999987 55 3444333 344679999988866789999999876543
No 96
>PLN02712 arogenate dehydrogenase
Probab=99.66 E-value=7e-15 Score=147.09 Aligned_cols=174 Identities=17% Similarity=0.211 Sum_probs=125.8
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhh-cCCEEEEeeCChhHHHHHhcc
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAA-SCDVTFAMLADPESAMDVACG 147 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aDivi~~~p~~~~~~~~~~~ 147 (359)
..+|+|||||+|.||..+|+.|.++|++|.+|||+... +...+.|+....++++++. .+|+|++|+| +..+..++
T Consensus 367 ~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~~~Gv~~~~~~~el~~~~aDvVILavP-~~~~~~vi-- 442 (667)
T PLN02712 367 GSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQKLGVSYFSDADDLCEEHPEVILLCTS-ILSTEKVL-- 442 (667)
T ss_pred CCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHHHcCCeEeCCHHHHHhcCCCEEEECCC-hHHHHHHH--
Confidence 67799999999999999999999999999999998543 4445567777778888776 5899999998 67888888
Q ss_pred cccccc-cCCCCCEEEeccCCChHHHHHHHHHHHhcCCeee-cCCCCCCCccc-c-CCceE----EEecCCHH---HHHH
Q 018213 148 KHGAAS-GMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL-EAPVSGSKKPA-E-DGQLI----FLAAGDKS---LYNT 216 (359)
Q Consensus 148 ~~~~~~-~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~-~-~~~~~----~~~~g~~~---~~~~ 216 (359)
+++.. .++++++++|+++++....+.+.+.+ ..+..|+ .+|++|.+... . ..... .+++++.+ ..+.
T Consensus 443 -~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l-~~~~~~v~~HPm~G~e~~~~G~~~~~~lf~~~~v~~~~~~~~~~~~ 520 (667)
T PLN02712 443 -KSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHL-PQDFDILCTHPMFGPESGKNGWNNLAFVFDKVRIGSDDRRVSRCDS 520 (667)
T ss_pred -HHHHHhcCCCCcEEEECCCccHHHHHHHHHhc-cCCCceEeeCCCCCccccccchhhhhhhccCcEeCCCcchHHHHHH
Confidence 55544 58899999999999865555555554 3466788 59999987541 0 01110 12334433 3455
Q ss_pred HHHHHHHhCCCeEEeCccChHHHHHHHHHHHHH
Q 018213 217 VAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMG 249 (359)
Q Consensus 217 v~~ll~~lg~~~~~~g~~~~~~~~kl~~n~~~~ 249 (359)
+.++++.+|.+++.+....+...+. ..|.+.+
T Consensus 521 l~~l~~~lGa~vv~ms~eeHD~~~A-~vShLpH 552 (667)
T PLN02712 521 FLDIFAREGCRMVEMSCAEHDWHAA-GSQFITH 552 (667)
T ss_pred HHHHHHHcCCEEEEeCHHHHHHHHH-HHHHHHH
Confidence 6689999999999888866453333 3344444
No 97
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=99.65 E-value=2.7e-14 Score=128.11 Aligned_cols=242 Identities=17% Similarity=0.173 Sum_probs=153.7
Q ss_pred CCeEEEEcCChhhHHHHHHHHHCC----CcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhc
Q 018213 71 PGRIGFLGMGIMGTPMAQNLLKAG----CDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 146 (359)
Q Consensus 71 ~~~igiiG~G~iG~~ia~~l~~~g----~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~ 146 (359)
.|||+|||+|+||.++++.|.+.| .++++++|++++. +.....+..++++++|+||+|+| +.+++.++
T Consensus 3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~D~Vilavk-p~~~~~vl- 74 (260)
T PTZ00431 3 NIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT------PFVYLQSNEELAKTCDIIVLAVK-PDLAGKVL- 74 (260)
T ss_pred CCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC------CeEEeCChHHHHHhCCEEEEEeC-HHHHHHHH-
Confidence 478999999999999999999877 2489999876542 33445677888889999999995 89999999
Q ss_pred ccccccccCCCCCEEEeccCCChHHHHHHHHHHHhc--CCeeecCCCCCCCccccCCceEEEecC---CHHHHHHHHHHH
Q 018213 147 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT--GASFLEAPVSGSKKPAEDGQLIFLAAG---DKSLYNTVAPLL 221 (359)
Q Consensus 147 ~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~v~~ll 221 (359)
.++.+.++++ .+|....+-. .+.+.+.+... .+++++ .. +.....+... ++.. +++..+.++.+|
T Consensus 75 --~~i~~~l~~~-~iIS~~aGi~--~~~l~~~~~~~~~vvr~mP--n~--p~~~g~g~t~-i~~~~~~~~~~~~~v~~l~ 144 (260)
T PTZ00431 75 --LEIKPYLGSK-LLISICGGLN--LKTLEEMVGVEAKIVRVMP--NT--PSLVGQGSLV-FCANNNVDSTDKKKVIDIF 144 (260)
T ss_pred --HHHHhhccCC-EEEEEeCCcc--HHHHHHHcCCCCeEEEECC--Cc--hhHhcceeEE-EEeCCCCCHHHHHHHHHHH
Confidence 7777666654 4554444333 23344444321 122322 11 1122233333 3332 567788999999
Q ss_pred HHhCCCeEEeCc--cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcc-ccchhhhhcc--c-cccc
Q 018213 222 DIMGKSRFYLGD--VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGA-ISAPMYSLKG--P-SMIE 295 (359)
Q Consensus 222 ~~lg~~~~~~g~--~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~-~~s~~~~~~~--~-~~~~ 295 (359)
+.+|...+. .+ ......+--....+.+.++.++.++. .+.|++.++..+++.++. +...++.... + .+.+
T Consensus 145 ~~~G~~~~v-~E~~~d~~ta~~gsgPA~~~~~~~al~~~~---v~~Gl~~~~a~~l~~~~~~G~a~ll~~~~~~~~~l~~ 220 (260)
T PTZ00431 145 SACGIIQEI-KEKDMDIATAISGCGPAYVFLFIESLIDAG---VKNGLNRDVSKNLVLQTILGSVHMVKASDQPVQQLKD 220 (260)
T ss_pred HhCCcEEEE-ChHHcchhhhhcCCHHHHHHHHHHHHHHHH---HHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 999986644 44 22222232233455555555555554 889999999999998763 2233332221 2 1222
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHC
Q 018213 296 SLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSH 341 (359)
Q Consensus 296 ~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~ 341 (359)
.-..|+.+... .++..++.|+..-+.+++.+..+++.+.
T Consensus 221 ~v~spgG~T~~-------gl~~le~~g~~~~~~~a~~aa~~r~~~l 259 (260)
T PTZ00431 221 DVCSPGGITIV-------GLYTLEKHAFKYTVMDAVESACQKSKSM 259 (260)
T ss_pred hCCCCChHHHH-------HHHHHHHCChHHHHHHHHHHHHHHHHhc
Confidence 33345544333 3556788899999999999888887764
No 98
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.63 E-value=1.7e-14 Score=128.55 Aligned_cols=198 Identities=17% Similarity=0.189 Sum_probs=131.9
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCC---c-EEEEcCC-ccchhHHHh-CCCccCCCHHHHhhcCCEEEEeeCChhHHH
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGC---D-VTVWNRT-KSKCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADPESAM 142 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~---~-V~~~d~~-~~~~~~~~~-~g~~~~~~~~~~~~~aDivi~~~p~~~~~~ 142 (359)
++.+||+|||+|+||.+++..+...|. + +++++|+ +++.+.+.+ .++..+.+.+++++++|+|++++| +...+
T Consensus 2 m~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp-~~~~~ 80 (245)
T PRK07634 2 LKKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMP-PSAHE 80 (245)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecC-HHHHH
Confidence 345889999999999999999988763 3 6778874 556666554 367667788899999999999997 66778
Q ss_pred HHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEe--cCCHHHHHHHHHH
Q 018213 143 DVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLA--AGDKSLYNTVAPL 220 (359)
Q Consensus 143 ~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~v~~l 220 (359)
.++ +++.+.++ +.+||+++.+-... .+.+.+.........+|.+..+. ..+...+.. ..+++..+.++++
T Consensus 81 ~v~---~~l~~~~~-~~~vis~~~gi~~~--~l~~~~~~~~~v~r~~Pn~a~~v--~~g~~~~~~~~~~~~~~~~~v~~l 152 (245)
T PRK07634 81 ELL---AELSPLLS-NQLVVTVAAGIGPS--YLEERLPKGTPVAWIMPNTAAEI--GKSISLYTMGQSVNETHKETLQLI 152 (245)
T ss_pred HHH---HHHHhhcc-CCEEEEECCCCCHH--HHHHHcCCCCeEEEECCcHHHHH--hcCCeEEeeCCCCCHHHHHHHHHH
Confidence 887 66655554 67889887665443 46555543221223356544322 223222222 3478889999999
Q ss_pred HHHhCCCeEEeCc--cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 018213 221 LDIMGKSRFYLGD--VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQG 279 (359)
Q Consensus 221 l~~lg~~~~~~g~--~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~ 279 (359)
|+.+|..++ +.+ .....+.--....+.+.++.++.++ +.+.|++.++..+++...
T Consensus 153 f~~~G~~~~-~~e~~~~~~~a~~gs~pa~~~~~~~a~~~~---~~~~Gl~~~~a~~~~~~~ 209 (245)
T PRK07634 153 LKGIGTSQL-CTEEEVHQLTAVTGSAPAFLYYFAESLIEA---TKSYGVDEETAKHLVIQM 209 (245)
T ss_pred HHhCCCEEE-ECHHHcchHHhhhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHH
Confidence 999999775 444 2222222223333444454444444 588999999999988865
No 99
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=99.62 E-value=9.8e-15 Score=122.66 Aligned_cols=171 Identities=20% Similarity=0.229 Sum_probs=117.1
Q ss_pred CCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccc-hhHHHhC-CC-ccCCCHHHHhhcCCEEEEeeCChhHHHHHhcc
Q 018213 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK-CDPLISL-GA-KYQPSPDEVAASCDVTFAMLADPESAMDVACG 147 (359)
Q Consensus 71 ~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~-~~~~~~~-g~-~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~ 147 (359)
+|+++|+|+|+||.++|++|...||+|++-+|+.++ .+...+. +. ....+.+++.+.+|||++++| -+....++
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP-~~a~~~v~-- 77 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVP-FEAIPDVL-- 77 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEecc-HHHHHhHH--
Confidence 478999999999999999999999999998665443 3332221 22 224478899999999999998 56777777
Q ss_pred cccccccCCCCCEEEeccCCC-----h----------HHHHHHHHHHHhc----CCeeecCCCCCCCccccCCceEEEec
Q 018213 148 KHGAASGMGPGKGYVDVSTVD-----G----------DTSKLINGHIKAT----GASFLEAPVSGSKKPAEDGQLIFLAA 208 (359)
Q Consensus 148 ~~~~~~~l~~~~~vi~~s~~~-----~----------~~~~~l~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (359)
+++...+. |+++||++... + ...+.+.+.+... ..+-+.+..+...........+++++
T Consensus 78 -~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~akVVkAFn~i~a~~l~~~~~~~~~~~v~vag 155 (211)
T COG2085 78 -AELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGAKVVKAFNTIPAAVLADLAKPGGRRDVLVAG 155 (211)
T ss_pred -HHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCcchhhhhcccCHHHhccCCCcCCceeEEEec
Confidence 77777665 89999997741 1 1233444444332 11222233333222222445667788
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEeCccChHHHHHHHHHH
Q 018213 209 GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNM 246 (359)
Q Consensus 209 g~~~~~~~v~~ll~~lg~~~~~~g~~~~~~~~kl~~n~ 246 (359)
.|.++.+.+.++.+.+|+.++.+|+...+..+.-+...
T Consensus 156 DD~~Ak~~v~~L~~~iG~~~ld~G~L~~a~~le~~t~l 193 (211)
T COG2085 156 DDAEAKAVVAELAEDIGFRPLDAGPLENARILEPGTPL 193 (211)
T ss_pred CcHHHHHHHHHHHHhcCcceeecccccccccccccchH
Confidence 89999999999999999999999986545554444333
No 100
>PLN02712 arogenate dehydrogenase
Probab=99.62 E-value=5.5e-14 Score=140.69 Aligned_cols=169 Identities=17% Similarity=0.208 Sum_probs=125.0
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHh-hcCCEEEEeeCChhHHHHHhcc
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVA-ASCDVTFAMLADPESAMDVACG 147 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~-~~aDivi~~~p~~~~~~~~~~~ 147 (359)
.+.++|||||+|.||+.+|+.|.++|++|++|+|+... +...+.|+..+.+.++++ .++|+|++|+| +..+..++
T Consensus 50 ~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~~~Gv~~~~d~~e~~~~~aDvViLavP-~~~~~~vl-- 125 (667)
T PLN02712 50 TTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAARSLGVSFFLDPHDLCERHPDVILLCTS-IISTENVL-- 125 (667)
T ss_pred CCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHHHcCCEEeCCHHHHhhcCCCEEEEcCC-HHHHHHHH--
Confidence 55689999999999999999999999999999998443 444556777777888866 46999999998 67889988
Q ss_pred ccccc-ccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec-CCCCCCCcc--ccCCceEEEe----cCCH---HHHHH
Q 018213 148 KHGAA-SGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKP--AEDGQLIFLA----AGDK---SLYNT 216 (359)
Q Consensus 148 ~~~~~-~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~----~g~~---~~~~~ 216 (359)
+++. +.++++++|+|+++.+....+.+.+.+. .+..|+. +|++|++.. ...+...++. +.+. +..+.
T Consensus 126 -~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~-~~~~~v~~HPMaG~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (667)
T PLN02712 126 -KSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYLP-EDFDIICSHPMFGPQSAKHGWDGLRFVYEKVRIGNEELRVSRCKS 203 (667)
T ss_pred -HhhhhhcCCCCeEEEECCCCcHHHHHHHHHhcC-CCCeEEeeCCcCCCccccchhccCcEEEeeccCCCccccHHHHHH
Confidence 6654 5688999999999888766666666553 3556776 999998732 1222223333 2222 34567
Q ss_pred HHHHHHHhCCCeEEeCccChHHHHHHH
Q 018213 217 VAPLLDIMGKSRFYLGDVGNGAAMKLV 243 (359)
Q Consensus 217 v~~ll~~lg~~~~~~g~~~~~~~~kl~ 243 (359)
+.++++.+|.+++.+....+......+
T Consensus 204 l~~l~~~lGa~v~~ms~eeHD~~~A~v 230 (667)
T PLN02712 204 FLEVFEREGCKMVEMSCTEHDKYAAES 230 (667)
T ss_pred HHHHHHHcCCEEEEeCHHHHHHHHHHH
Confidence 779999999999988876645544443
No 101
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.60 E-value=8.3e-14 Score=126.08 Aligned_cols=247 Identities=13% Similarity=0.165 Sum_probs=151.8
Q ss_pred CeEEEEcCChhhHHHHHHHHHCC----CcEEEEcCCcc-chhHHHhC--CCccCCCHHHHhhcCCEEEEeeCChhHHHHH
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKAG----CDVTVWNRTKS-KCDPLISL--GAKYQPSPDEVAASCDVTFAMLADPESAMDV 144 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~g----~~V~~~d~~~~-~~~~~~~~--g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~ 144 (359)
++|+|||+|+||.++++.|...| ++|.+|+|+.+ +.+.+... ++....+..+++.++|+||+|+| +..+..+
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavp-p~~~~~v 80 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVP-PLAVLPL 80 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecC-HHHHHHH
Confidence 67999999999999999999988 78999998653 23333332 23445678888899999999997 8888888
Q ss_pred hcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec-CCCCCCCccccCCceEEEecC--CHHHHHHHHHHH
Q 018213 145 ACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPAEDGQLIFLAAG--DKSLYNTVAPLL 221 (359)
Q Consensus 145 ~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g--~~~~~~~v~~ll 221 (359)
+ +++.+.++++.+||++..|-.. +.|.+.+.. ..++- .|... .....+...+..+. +++..+.++.+|
T Consensus 81 l---~~l~~~l~~~~~ivS~~aGi~~--~~l~~~~~~--~~vvR~MPN~~--~~~g~g~t~~~~~~~~~~~~~~~v~~l~ 151 (277)
T PRK06928 81 L---KDCAPVLTPDRHVVSIAAGVSL--DDLLEITPG--LQVSRLIPSLT--SAVGVGTSLVAHAETVNEANKSRLEETL 151 (277)
T ss_pred H---HHHHhhcCCCCEEEEECCCCCH--HHHHHHcCC--CCEEEEeCccH--HHHhhhcEEEecCCCCCHHHHHHHHHHH
Confidence 8 7777777888899988776444 356666532 12222 33322 22233444333332 567788999999
Q ss_pred HHhCCCeEEeCc--cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHhhcccc-chhhhh--cccc-cc
Q 018213 222 DIMGKSRFYLGD--VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKV-GLDPNVLVEVVSQGAIS-APMYSL--KGPS-MI 294 (359)
Q Consensus 222 ~~lg~~~~~~g~--~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~-Gi~~~~~~~~~~~~~~~-s~~~~~--~~~~-~~ 294 (359)
+.+|.... +.+ .....++--....+.+.++.++.++ +.+. |++.++..+++.++... ..+... ..+. +.
T Consensus 152 ~~~G~~~~-v~E~~~d~~tal~gsgPA~~~~~~~al~~a---~~~~ggl~~~~a~~l~~~~~~G~a~l~~~~~~~p~~l~ 227 (277)
T PRK06928 152 SHFSHVMT-IREENMDIASNLTSSSPGFIAAIFEEFAEA---AVRNSSLSDEEAFQFLNFALAGTGKLLVEEDYTFSGTI 227 (277)
T ss_pred HhCCCEEE-EchhhCceeeeeecCHHHHHHHHHHHHHHH---HHHhCCCCHHHHHHHHHHHHHHHHHHHHccCCCHHHHH
Confidence 99998654 333 2222222222334444444444444 3676 79999999999876432 222221 1122 22
Q ss_pred cCCCCCCcchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Q 018213 295 ESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKS 340 (359)
Q Consensus 295 ~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~ 340 (359)
+.-..|+.+...+ ++..++ |++.-+.+++.+..++..+
T Consensus 228 ~~v~spgGtT~~g-------l~~le~-~~~~~~~~~~~~a~~r~~~ 265 (277)
T PRK06928 228 ERVATKGGITAEG-------AEVIQA-QLPQFFDELLDRTQKKYAS 265 (277)
T ss_pred HhCCCCChHHHHH-------HHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 2233455443333 233443 6666666666666665544
No 102
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.59 E-value=1.3e-13 Score=141.56 Aligned_cols=183 Identities=17% Similarity=0.255 Sum_probs=136.3
Q ss_pred CeEEEEcCChhhHHHHHHHHHCC--CcEEEEcCCccchhHHHhCCCc--cCCCHHHHhhcCCEEEEeeCChhHHHHHhcc
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKAG--CDVTVWNRTKSKCDPLISLGAK--YQPSPDEVAASCDVTFAMLADPESAMDVACG 147 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~g--~~V~~~d~~~~~~~~~~~~g~~--~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~ 147 (359)
++|+|||+|.||.++++.|...| ++|++||+++++.+...+.|+. ...+.++++.++|+|++|+| +..+..++
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp-~~~~~~vl-- 80 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVP-VLAMEKVL-- 80 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCC-HHHHHHHH--
Confidence 67999999999999999999998 4899999998877766666654 34567788899999999997 66888888
Q ss_pred cccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec-CCCCCCCcc--------ccCCceEEEec---CCHHHHH
Q 018213 148 KHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKP--------AEDGQLIFLAA---GDKSLYN 215 (359)
Q Consensus 148 ~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~--------~~~~~~~~~~~---g~~~~~~ 215 (359)
+++.+.++++.+|+++++.+....+.+.+.+....++++. +|++|++.. ...+..++++. .+++..+
T Consensus 81 -~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~~~~~~~ 159 (735)
T PRK14806 81 -ADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAETDPAALA 159 (735)
T ss_pred -HHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCCCHHHHH
Confidence 7777778889999999998877777777776544567765 898876532 11233334443 3677889
Q ss_pred HHHHHHHHhCCCeEEeCccChHHHHHHHHHHHHHHHHHHHHHHH
Q 018213 216 TVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGL 259 (359)
Q Consensus 216 ~v~~ll~~lg~~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~ 259 (359)
.+.++++.+|.+++.+++..+.....+ .+.+-+.+...+.|++
T Consensus 160 ~~~~l~~~~G~~~~~~~~~~hD~~~a~-~~~~ph~~~~~l~~~l 202 (735)
T PRK14806 160 RVDRLWRAVGADVLHMDVAHHDEVLAA-TSHLPHLLAFSLVDQL 202 (735)
T ss_pred HHHHHHHHcCCEEEEcCHHHHhHHHHH-hcchHHHHHHHHHHHH
Confidence 999999999998888877554444433 3444444445555654
No 103
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=99.59 E-value=3.9e-14 Score=123.89 Aligned_cols=169 Identities=17% Similarity=0.208 Sum_probs=117.1
Q ss_pred CeEEEEc-CChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC--------CCc---cCCCHHHHhhcCCEEEEeeCChh
Q 018213 72 GRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--------GAK---YQPSPDEVAASCDVTFAMLADPE 139 (359)
Q Consensus 72 ~~igiiG-~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~--------g~~---~~~~~~~~~~~aDivi~~~p~~~ 139 (359)
|||+||| +|+||++++..|.+.|++|.+++|++++.+.+.+. |+. ...+..+.++++|+||+++| +.
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp-~~ 79 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVP-WD 79 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECC-HH
Confidence 5799997 89999999999999999999999998776654431 211 12366778899999999997 77
Q ss_pred HHHHHhcccccccccCCCCCEEEeccCCChHH---------------HHHHHHHHHhcCCeeecC-C-----CCCCCccc
Q 018213 140 SAMDVACGKHGAASGMGPGKGYVDVSTVDGDT---------------SKLINGHIKATGASFLEA-P-----VSGSKKPA 198 (359)
Q Consensus 140 ~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~---------------~~~l~~~l~~~~~~~~~~-~-----~~~~~~~~ 198 (359)
....++ +++...+. +++||+++.+...+ .+.+.+.+.. +.+++.+ + +... ...
T Consensus 80 ~~~~~l---~~l~~~l~-~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~-~~~VVka~~~~~a~~~~~-~~~ 153 (219)
T TIGR01915 80 HVLKTL---ESLRDELS-GKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPE-TSRVVAAFHNLSAVLLQD-VDD 153 (219)
T ss_pred HHHHHH---HHHHHhcc-CCEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCC-CCeEeeccccCCHHHhcC-CCC
Confidence 788887 55544454 58999997775431 1345455432 1233331 1 2222 122
Q ss_pred cCCceEEEecCCHHHHHHHHHHHHHh-CCCeEEeCccChHHHHHHHHHHH
Q 018213 199 EDGQLIFLAAGDKSLYNTVAPLLDIM-GKSRFYLGDVGNGAAMKLVVNMI 247 (359)
Q Consensus 199 ~~~~~~~~~~g~~~~~~~v~~ll~~l-g~~~~~~g~~~~~~~~kl~~n~~ 247 (359)
..+..+++++.++++.+.+.+|++.+ |+.+++.|+...+..+.-....+
T Consensus 154 ~~~~~~~v~Gdd~~ak~~v~~L~~~~~G~~~vd~G~l~~a~~~e~~~~l~ 203 (219)
T TIGR01915 154 EVDCDVLVCGDDEEAKEVVAELAGRIDGLRALDAGPLENAAIVESLTPLL 203 (219)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHhcCCCCcccCCchhhHHHHHhHHHHH
Confidence 23455667777888899999999999 99999999876565555444333
No 104
>PRK08818 prephenate dehydrogenase; Provisional
Probab=99.58 E-value=2e-13 Score=126.90 Aligned_cols=156 Identities=15% Similarity=0.183 Sum_probs=120.8
Q ss_pred CCCeEEEEcC-ChhhHHHHHHHHH-CCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcc
Q 018213 70 LPGRIGFLGM-GIMGTPMAQNLLK-AGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG 147 (359)
Q Consensus 70 ~~~~igiiG~-G~iG~~ia~~l~~-~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~ 147 (359)
..++|+|||+ |.||+.+|+.|++ .|++|++||+..+ ...++++.+++||+|++|+| ...+..++
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~-----------~~~~~~~~v~~aDlVilavP-v~~~~~~l-- 68 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP-----------GSLDPATLLQRADVLIFSAP-IRHTAALI-- 68 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc-----------ccCCHHHHhcCCCEEEEeCC-HHHHHHHH--
Confidence 3478999999 9999999999986 4899999998521 12367788899999999998 77888888
Q ss_pred ccccccc---CCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec-CCCCCCCcc-ccCCceEEEecC-CHHHHHHHHHHH
Q 018213 148 KHGAASG---MGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKP-AEDGQLIFLAAG-DKSLYNTVAPLL 221 (359)
Q Consensus 148 ~~~~~~~---l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~g-~~~~~~~v~~ll 221 (359)
+++.+. ++++++|.|+++.+....+.+. ..+..|++ ||++|++.. ...+...+++.+ ..+..+.+.+++
T Consensus 69 -~~l~~~~~~l~~~~iVtDVgSvK~~i~~~~~----~~~~~fVG~HPMaG~E~s~lf~g~~~iltp~~~~~~~~~v~~l~ 143 (370)
T PRK08818 69 -EEYVALAGGRAAGQLWLDVTSIKQAPVAAML----ASQAEVVGLHPMTAPPKSPTLKGRVMVVCEARLQHWSPWVQSLC 143 (370)
T ss_pred -HHHhhhhcCCCCCeEEEECCCCcHHHHHHHH----hcCCCEEeeCCCCCCCCCcccCCCeEEEeCCCchhHHHHHHHHH
Confidence 666654 7999999999999865554442 33456887 999998743 345666666654 445578899999
Q ss_pred HHhCCCeEEeCccChHHHHHHHH
Q 018213 222 DIMGKSRFYLGDVGNGAAMKLVV 244 (359)
Q Consensus 222 ~~lg~~~~~~g~~~~~~~~kl~~ 244 (359)
+.+|.+++.+....+...+..++
T Consensus 144 ~~~Ga~v~~~~aeeHD~~~A~vS 166 (370)
T PRK08818 144 SALQAECVYATPEHHDRVMALVQ 166 (370)
T ss_pred HHcCCEEEEcCHHHHHHHHHHHH
Confidence 99999999988877666666664
No 105
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.58 E-value=1.7e-13 Score=124.95 Aligned_cols=195 Identities=16% Similarity=0.174 Sum_probs=129.0
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccch-hHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcc
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKC-DPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG 147 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~-~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~ 147 (359)
+++++|||||+|+||.++|+.|..+|++|++++++..+. +...+.|+... +.++++++||+|++++|.. ....++
T Consensus 15 L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~-s~~eaa~~ADVVvLaVPd~-~~~~V~-- 90 (330)
T PRK05479 15 IKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVL-TVAEAAKWADVIMILLPDE-VQAEVY-- 90 (330)
T ss_pred hCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeC-CHHHHHhcCCEEEEcCCHH-HHHHHH--
Confidence 778999999999999999999999999999888764433 33344577655 8899999999999999854 447776
Q ss_pred cccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec-CCCCCCCc-----cccCCceEEE-ecCC--HHHHHHHH
Q 018213 148 KHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKK-----PAEDGQLIFL-AAGD--KSLYNTVA 218 (359)
Q Consensus 148 ~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~-~~g~--~~~~~~v~ 218 (359)
++++.+.+++|++|+ .+.|..... + ......++.++- +|...... ....|...++ +..+ .++.+.+.
T Consensus 91 ~~~I~~~Lk~g~iL~-~a~G~~i~~--~-~~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~av~~d~t~~a~~~a~ 166 (330)
T PRK05479 91 EEEIEPNLKEGAALA-FAHGFNIHF--G-QIVPPADVDVIMVAPKGPGHLVRREYEEGGGVPCLIAVHQDASGNAKDLAL 166 (330)
T ss_pred HHHHHhcCCCCCEEE-ECCCCChhh--c-eeccCCCCcEEEeCCCCCchhhhhhhhcCCCceEEEEecCCCCHHHHHHHH
Confidence 466788899999884 444433222 1 111123333333 34322220 1233444444 4444 78889999
Q ss_pred HHHHHhCCCeE-----EeCc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 018213 219 PLLDIMGKSRF-----YLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLV 273 (359)
Q Consensus 219 ~ll~~lg~~~~-----~~g~-~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~ 273 (359)
.++..+|.... ...+ ......-. ...+.+.+..++..++.++.+.|.+|+..+
T Consensus 167 ~l~~aiG~~~~g~~~ttf~~e~~~dl~ge--q~vl~gg~~~l~~~~~e~l~eaG~~pe~Ay 225 (330)
T PRK05479 167 AYAKGIGGTRAGVIETTFKEETETDLFGE--QAVLCGGLTELIKAGFETLVEAGYQPEMAY 225 (330)
T ss_pred HHHHHcCCCccceeeeeecccccccchhh--HHHHhhHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 99999998753 2222 11111111 345566667777788888899999987765
No 106
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=99.55 E-value=3.1e-13 Score=121.68 Aligned_cols=193 Identities=15% Similarity=0.182 Sum_probs=138.4
Q ss_pred CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHH-----------hCC-------------CccCCCHHHHhhc
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI-----------SLG-------------AKYQPSPDEVAAS 127 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~-----------~~g-------------~~~~~~~~~~~~~ 127 (359)
++|+|||.|.||..||..++..|++|.++|++++..+... +.| +....++. .+++
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~~ 82 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALKD 82 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hhcc
Confidence 7899999999999999999998899999999965433211 111 22333443 5789
Q ss_pred CCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEe
Q 018213 128 CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLA 207 (359)
Q Consensus 128 aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (359)
||+||.++|...++++-+| +++-...++++++-..+++-+. .++.+.++ +.-++++.+.|.+++.. +++-++
T Consensus 83 ~DlVIEAv~E~levK~~vf--~~l~~~~~~~aIlASNTSsl~i--t~ia~~~~-rper~iG~HFfNP~~~m---~LVEvI 154 (307)
T COG1250 83 ADLVIEAVVEDLELKKQVF--AELEALAKPDAILASNTSSLSI--TELAEALK-RPERFIGLHFFNPVPLM---PLVEVI 154 (307)
T ss_pred CCEEEEeccccHHHHHHHH--HHHHhhcCCCcEEeeccCCCCH--HHHHHHhC-CchhEEEEeccCCCCcc---eeEEEe
Confidence 9999999999999988764 6666677888888744443333 45666663 32245554444444332 344455
Q ss_pred cC---CHHHHHHHHHHHHHhCCCeEEeCc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcccc
Q 018213 208 AG---DKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAIS 282 (359)
Q Consensus 208 ~g---~~~~~~~v~~ll~~lg~~~~~~g~-~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~ 282 (359)
.| +++.++++.++.+.+|+.++...+ +| .+.|-+... .+.|++.+..+...++++++.+++.+.+.
T Consensus 155 ~g~~T~~e~~~~~~~~~~~igK~~vv~~D~pG------Fi~NRil~~---~~~eA~~l~~eGva~~e~ID~~~~~~~G~ 224 (307)
T COG1250 155 RGEKTSDETVERVVEFAKKIGKTPVVVKDVPG------FIVNRLLAA---LLNEAIRLLEEGVATPEEIDAAMRQGLGL 224 (307)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCCCEeecCCCc------eehHhHHHH---HHHHHHHHHHhCCCCHHHHHHHHHhccCC
Confidence 54 789999999999999988766677 66 555554443 36699999999889999999999986554
No 107
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.51 E-value=3.3e-13 Score=123.86 Aligned_cols=181 Identities=18% Similarity=0.181 Sum_probs=133.8
Q ss_pred hhHHHHHHHHHCCCcEEEEcCCccch-------hH-----------HHhCC-------------CccCCC--HHHHhhcC
Q 018213 82 MGTPMAQNLLKAGCDVTVWNRTKSKC-------DP-----------LISLG-------------AKYQPS--PDEVAASC 128 (359)
Q Consensus 82 iG~~ia~~l~~~g~~V~~~d~~~~~~-------~~-----------~~~~g-------------~~~~~~--~~~~~~~a 128 (359)
||..||..++..|++|.+||++++.. +. +.+.| +....+ ..+++++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 79999999999999999999998531 11 11111 233333 56788999
Q ss_pred CEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHh----cCCeeecCCCCCCCccccCCceE
Q 018213 129 DVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKA----TGASFLEAPVSGSKKPAEDGQLI 204 (359)
Q Consensus 129 Divi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~ 204 (359)
|+||.++|.+.+++..+| .++.+.+++++++. |+.+......+.+.+.. .|++|+++|..- +++
T Consensus 81 D~ViEav~E~~~~K~~~f--~~l~~~~~~~~ila--SntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~--------~lv 148 (314)
T PRK08269 81 DLVFEAVPEVLDAKREAL--RWLGRHVDADAIIA--STTSTFLVTDLQRHVAHPERFLNAHWLNPAYLM--------PLV 148 (314)
T ss_pred CEEEECCcCCHHHHHHHH--HHHHhhCCCCcEEE--EccccCCHHHHHhhcCCcccEEEEecCCccccC--------ceE
Confidence 999999999999999885 55777788999885 55566666678777743 255666655322 233
Q ss_pred EEec---CCHHHHHHHHHHHHHhCCCeEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccc
Q 018213 205 FLAA---GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAI 281 (359)
Q Consensus 205 ~~~~---g~~~~~~~v~~ll~~lg~~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~ 281 (359)
-+++ ++++.++++.++++.+|+.++++++.+ + +.+...+...++|++.++++.+++++++++++..+.+
T Consensus 149 EVv~g~~t~~e~~~~~~~ll~~lGk~~v~v~d~~-G-------fi~nri~~~~l~EAl~l~e~g~~~~e~iD~a~~~g~G 220 (314)
T PRK08269 149 EVSPSDATDPAVVDRLAALLERIGKVPVVCGPSP-G-------YIVPRIQALAMNEAARMVEEGVASAEDIDKAIRTGFG 220 (314)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHcCCcEEEecCCC-C-------cchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCC
Confidence 3333 489999999999999999999999844 2 2344555667889999999999999999999987655
Q ss_pred c
Q 018213 282 S 282 (359)
Q Consensus 282 ~ 282 (359)
.
T Consensus 221 ~ 221 (314)
T PRK08269 221 L 221 (314)
T ss_pred C
Confidence 4
No 108
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=99.49 E-value=1.6e-12 Score=116.94 Aligned_cols=196 Identities=17% Similarity=0.153 Sum_probs=121.5
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhccc
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK 148 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~ 148 (359)
+++++|||||+|+||+++|++|..+|++|+++++.....+.....|+... ++++++++||+|++++|+ +++++++ +
T Consensus 14 LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~-sl~Eaak~ADVV~llLPd-~~t~~V~--~ 89 (335)
T PRK13403 14 LQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVM-SVSEAVRTAQVVQMLLPD-EQQAHVY--K 89 (335)
T ss_pred hCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEEC-CHHHHHhcCCEEEEeCCC-hHHHHHH--H
Confidence 78899999999999999999999999999999876444444445577654 899999999999999997 5668888 5
Q ss_pred ccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec-CCCC-CCCcc----ccCCceEEEec---CCHHHHHHHHH
Q 018213 149 HGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVS-GSKKP----AEDGQLIFLAA---GDKSLYNTVAP 219 (359)
Q Consensus 149 ~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~-~~~~~----~~~~~~~~~~~---g~~~~~~~v~~ 219 (359)
+++++.|++|++++-. .|.-+.... .....++.++- +|-- |.... ...|...++.- .+..+.+....
T Consensus 90 ~eil~~MK~GaiL~f~-hgfni~~~~---i~pp~~vdv~mvaPKgpG~~vR~~y~~G~Gvp~l~av~qd~sg~a~~~ala 165 (335)
T PRK13403 90 AEVEENLREGQMLLFS-HGFNIHFGQ---INPPSYVDVAMVAPKSPGHLVRRVFQEGNGVPALVAVHQDATGTALHVALA 165 (335)
T ss_pred HHHHhcCCCCCEEEEC-CCcceecCc---eeCCCCCeEEEECCCCCChHHHHHHHcCCCceeEEEEEECCCCcHHHHHHH
Confidence 6789999999977643 333222111 11123333322 2221 11110 11222222211 13446667777
Q ss_pred HHHHhCCC---eEEeCccChHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 018213 220 LLDIMGKS---RFYLGDVGNGAAMKLV--VNMIMGSMMATFSEGLLHSEKVGLDPNVLV 273 (359)
Q Consensus 220 ll~~lg~~---~~~~g~~~~~~~~kl~--~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~ 273 (359)
....+|.. ++.+ ......-..+. ...+...+..++.-.+..+.+.|.+|+..+
T Consensus 166 ~a~~iG~~ragv~~t-tf~~EtetDlfgEq~vL~Gg~~~li~~gfe~lveaGy~pe~Ay 223 (335)
T PRK13403 166 YAKGVGCTRAGVIET-TFQEETETDLFGEQAVLCGGVTALVKAGFETLTEGGYRPEIAY 223 (335)
T ss_pred HHHHcCCCceeEEec-chHHHHhhhhcccchhhHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 78888765 2222 11101111111 123455556666666677789999887655
No 109
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.49 E-value=8.5e-13 Score=133.89 Aligned_cols=191 Identities=15% Similarity=0.113 Sum_probs=139.1
Q ss_pred CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHH-----------hC-------------CCccCCCHHHHhhc
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI-----------SL-------------GAKYQPSPDEVAAS 127 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~-----------~~-------------g~~~~~~~~~~~~~ 127 (359)
++|+|||+|.||..||..++..|++|+++|++++..+... +. .+....+++ .+++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 392 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYA-GFER 392 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHH-HhcC
Confidence 6899999999999999999999999999999987644211 11 234455664 4689
Q ss_pred CCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEe
Q 018213 128 CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLA 207 (359)
Q Consensus 128 aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (359)
||+||.++|...+++.-+| .++-..+++++++...+++-++ ..+.+.+.. .-+++..+.+.+++.. +++-++
T Consensus 393 aDlViEav~E~l~~K~~vf--~~l~~~~~~~~ilasNTSsl~i--~~la~~~~~-p~r~~g~Hff~P~~~~---~lVEvv 464 (715)
T PRK11730 393 VDVVVEAVVENPKVKAAVL--AEVEQKVREDTILASNTSTISI--SLLAKALKR-PENFCGMHFFNPVHRM---PLVEVI 464 (715)
T ss_pred CCEEEecccCcHHHHHHHH--HHHHhhCCCCcEEEEcCCCCCH--HHHHhhcCC-CccEEEEecCCccccc---ceEEee
Confidence 9999999999999988774 6677778899888755554444 346666643 3345555555443322 334444
Q ss_pred cC---CHHHHHHHHHHHHHhCCCeEEeCc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccc
Q 018213 208 AG---DKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAI 281 (359)
Q Consensus 208 ~g---~~~~~~~v~~ll~~lg~~~~~~g~-~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~ 281 (359)
.+ +++.++.+..++..+|+.++.+.+ +| ++.|-+...+ +.|++.+.++. .++++++.++..+.+
T Consensus 465 ~g~~T~~~~~~~~~~~~~~lgk~pv~v~d~pG------fv~nRi~~~~---~~ea~~lv~~G-a~~e~ID~a~~~~~G 532 (715)
T PRK11730 465 RGEKTSDETIATVVAYASKMGKTPIVVNDCPG------FFVNRVLFPY---FAGFSQLLRDG-ADFRQIDKVMEKQFG 532 (715)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCceEEecCcCc------hhHHHHHHHH---HHHHHHHHHcC-CCHHHHHHHHHhhCC
Confidence 43 789999999999999999999987 66 5555554443 56888888764 999999999876543
No 110
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=99.48 E-value=2.1e-12 Score=118.13 Aligned_cols=195 Identities=15% Similarity=0.123 Sum_probs=123.1
Q ss_pred CCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCC-ccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhccc
Q 018213 70 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRT-KSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK 148 (359)
Q Consensus 70 ~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~-~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~ 148 (359)
++++|+|||+|+||.++|+.|..+|++|+++++. ++..+.+.+.|+... +..+++++||+|++++|...+...+.
T Consensus 2 ~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~-s~~ea~~~ADiVvLaVpp~~~~~~v~--- 77 (314)
T TIGR00465 2 KGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVG-TVEEAIPQADLIMNLLPDEVQHEVYE--- 77 (314)
T ss_pred CcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEEC-CHHHHHhcCCEEEEeCCcHhHHHHHH---
Confidence 4688999999999999999999999998776554 344455556677654 68888999999999998443555554
Q ss_pred ccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec-CCCCCCCcc-----ccCCceEEE-ecC--CHHHHHHHHH
Q 018213 149 HGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKP-----AEDGQLIFL-AAG--DKSLYNTVAP 219 (359)
Q Consensus 149 ~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~-~~g--~~~~~~~v~~ 219 (359)
+++.+.++++. +|..+.|-... .+...+. .+..++- +|....... ...+...++ +.. +.+..+.+..
T Consensus 78 ~ei~~~l~~g~-iVs~aaG~~i~--~~~~~~~-~~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~a~~~~~~~~~~~~~~~ 153 (314)
T TIGR00465 78 AEIQPLLKEGK-TLGFSHGFNIH--FVQIVPP-KDVDVVMVAPKGPGTLVREEYKEGFGVPTLIAVEQDPTGEAMAIALA 153 (314)
T ss_pred HHHHhhCCCCc-EEEEeCCccHh--hccccCC-CCCcEEEECCCCCcHHHHHHhhcCCCeeEEEEecCCCCHHHHHHHHH
Confidence 66777788775 67666665543 2333332 2333332 444322210 133443333 332 6777889999
Q ss_pred HHHHhCCC-------eE--EeCc--cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 018213 220 LLDIMGKS-------RF--YLGD--VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQG 279 (359)
Q Consensus 220 ll~~lg~~-------~~--~~g~--~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~ 279 (359)
+++.+|.. .+ .+.+ .+...++ ......++..+.|++ .+.|++++..+..+.++
T Consensus 154 ~~~~iG~~~~~~~~t~f~~e~~edl~~~~t~l----~Gs~pa~v~~~~eal---v~~G~~~e~A~~~~~~~ 217 (314)
T TIGR00465 154 YAKAIGGGRAGVLETTFKEETESDLFGEQAVL----CGGLTALIKAGFDTL---VEAGYQPELAYFETVHE 217 (314)
T ss_pred HHHHcCCCccceeechhHhhhhHHhcCcchhH----HhHHHHHHHHHHHHH---HHcCCCHHHHHHHHHHH
Confidence 99999987 21 1111 2211111 112222333444666 79999999999887654
No 111
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=99.47 E-value=1.3e-12 Score=132.23 Aligned_cols=191 Identities=16% Similarity=0.132 Sum_probs=138.8
Q ss_pred CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHH-----------hC-------------CCccCCCHHHHhhc
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI-----------SL-------------GAKYQPSPDEVAAS 127 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~-----------~~-------------g~~~~~~~~~~~~~ 127 (359)
++|+|||+|.||..||..++..|++|+++|++++..+... +. .+....+++ .+++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 392 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYA-GFDN 392 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHH-HhcC
Confidence 6899999999999999999999999999999987654321 11 233445554 4689
Q ss_pred CCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEe
Q 018213 128 CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLA 207 (359)
Q Consensus 128 aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (359)
||+||.++|...+++.-+| .++-+.+++++++...+++-++ ..+.+.+.. .-++++.+.+.++... +++-++
T Consensus 393 aDlViEav~E~l~~K~~vf--~~l~~~~~~~~ilasnTS~l~i--~~ia~~~~~-p~r~ig~Hff~P~~~~---~lvEvv 464 (714)
T TIGR02437 393 VDIVVEAVVENPKVKAAVL--AEVEQHVREDAILASNTSTISI--SLLAKALKR-PENFCGMHFFNPVHRM---PLVEVI 464 (714)
T ss_pred CCEEEEcCcccHHHHHHHH--HHHHhhCCCCcEEEECCCCCCH--HHHHhhcCC-cccEEEEecCCCcccC---ceEeec
Confidence 9999999999999987664 6777788899888755444444 356666643 2345554444433322 344444
Q ss_pred cC---CHHHHHHHHHHHHHhCCCeEEeCc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccc
Q 018213 208 AG---DKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAI 281 (359)
Q Consensus 208 ~g---~~~~~~~v~~ll~~lg~~~~~~g~-~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~ 281 (359)
.+ +++.++.+.+++..+|+.++.+.+ +| .+.|-+...+ +.|++.+.++ |.++++++.++..+.+
T Consensus 465 ~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pG------fi~NRl~~~~---~~ea~~l~~e-G~~~~~ID~a~~~~~G 532 (714)
T TIGR02437 465 RGEKSSDETIATVVAYASKMGKTPIVVNDCPG------FFVNRVLFPY---FGGFSKLLRD-GADFVRIDKVMEKQFG 532 (714)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEeCCccc------chHHHHHHHH---HHHHHHHHHC-CCCHHHHHHHHHhcCC
Confidence 44 789999999999999999999987 66 5556554443 5699888865 5999999999876543
No 112
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=99.47 E-value=1.3e-13 Score=116.43 Aligned_cols=152 Identities=14% Similarity=0.223 Sum_probs=100.6
Q ss_pred eEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHh-----------C-------------CCccCCCHHHHhhcC
Q 018213 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-----------L-------------GAKYQPSPDEVAASC 128 (359)
Q Consensus 73 ~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~-----------~-------------g~~~~~~~~~~~~~a 128 (359)
+|+|||+|.||..+|..++..|++|.+||++++..+...+ . .+....+++++. ++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a 79 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA 79 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence 5999999999999999999999999999999876443211 1 234567888887 99
Q ss_pred CEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEec
Q 018213 129 DVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAA 208 (359)
Q Consensus 129 Divi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (359)
|+||.++|...+.+.-+| +++.+.++++++|...+++.+.. .+.+.+... -++++.+.+.++.. .+++-++.
T Consensus 80 dlViEai~E~l~~K~~~~--~~l~~~~~~~~ilasnTSsl~i~--~la~~~~~p-~R~ig~Hf~~P~~~---~~lVEvv~ 151 (180)
T PF02737_consen 80 DLVIEAIPEDLELKQELF--AELDEICPPDTILASNTSSLSIS--ELAAALSRP-ERFIGMHFFNPPHL---MPLVEVVP 151 (180)
T ss_dssp SEEEE-S-SSHHHHHHHH--HHHHCCS-TTSEEEE--SSS-HH--HHHTTSSTG-GGEEEEEE-SSTTT-----EEEEEE
T ss_pred heehhhccccHHHHHHHH--HHHHHHhCCCceEEecCCCCCHH--HHHhccCcC-ceEEEEeccccccc---CceEEEeC
Confidence 999999999988887664 67777888999888665554443 455555322 23444333332221 23333443
Q ss_pred C---CHHHHHHHHHHHHHhCCCeEEeCc
Q 018213 209 G---DKSLYNTVAPLLDIMGKSRFYLGD 233 (359)
Q Consensus 209 g---~~~~~~~v~~ll~~lg~~~~~~g~ 233 (359)
+ +++.++.+..+++.+|+.++.+.+
T Consensus 152 ~~~T~~~~~~~~~~~~~~~gk~pv~v~D 179 (180)
T PF02737_consen 152 GPKTSPETVDRVRALLRSLGKTPVVVKD 179 (180)
T ss_dssp -TTS-HHHHHHHHHHHHHTT-EEEEEES
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEecC
Confidence 3 789999999999999999987744
No 113
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=99.47 E-value=1.1e-13 Score=104.83 Aligned_cols=90 Identities=26% Similarity=0.427 Sum_probs=75.7
Q ss_pred eEEEEcCChhhHHHHHHHHHCC---CcEEE-EcCCccchhHHHhC-CCccCC-CHHHHhhcCCEEEEeeCChhHHHHHhc
Q 018213 73 RIGFLGMGIMGTPMAQNLLKAG---CDVTV-WNRTKSKCDPLISL-GAKYQP-SPDEVAASCDVTFAMLADPESAMDVAC 146 (359)
Q Consensus 73 ~igiiG~G~iG~~ia~~l~~~g---~~V~~-~d~~~~~~~~~~~~-g~~~~~-~~~~~~~~aDivi~~~p~~~~~~~~~~ 146 (359)
||||||+|+||.++++.|...| ++|.+ ++|++++.+.+.+. ++.... +..|+++++|+|++|+| +.+..+++
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~-p~~~~~v~- 78 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVK-PQQLPEVL- 78 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S--GGGHHHHH-
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEEC-HHHHHHHH-
Confidence 6999999999999999999999 89995 49999988877554 555555 89999999999999996 88999998
Q ss_pred ccccccccCCCCCEEEeccCC
Q 018213 147 GKHGAASGMGPGKGYVDVSTV 167 (359)
Q Consensus 147 ~~~~~~~~l~~~~~vi~~s~~ 167 (359)
+++ ....+++++|+++.+
T Consensus 79 --~~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 79 --SEI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp --HHH-HHHHTTSEEEEESTT
T ss_pred --HHH-hhccCCCEEEEeCCC
Confidence 777 677899999988653
No 114
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=99.47 E-value=1.7e-12 Score=116.20 Aligned_cols=166 Identities=19% Similarity=0.292 Sum_probs=117.1
Q ss_pred HHHHHHHCC--CcEEEEcCCccchhHHHhCCCccCC-CHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEEE
Q 018213 86 MAQNLLKAG--CDVTVWNRTKSKCDPLISLGAKYQP-SPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYV 162 (359)
Q Consensus 86 ia~~l~~~g--~~V~~~d~~~~~~~~~~~~g~~~~~-~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi 162 (359)
+|+.|++.| ++|++||++++..+...+.|+.... +..+.+.++|+||+|+| ...+..++ +++.+.++++++|+
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP-~~~~~~~l---~~~~~~~~~~~iv~ 76 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVP-VSAIEDVL---EEIAPYLKPGAIVT 76 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S--HHHHHHHH---HHHHCGS-TTSEEE
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCC-HHHHHHHH---HHhhhhcCCCcEEE
Confidence 578899888 7899999998877776666764321 22577899999999998 77899999 88888999999999
Q ss_pred eccCCChHHHHHHHHHHHhcCCeeec-CCCCCCC--------ccccCCceEEEecC---CHHHHHHHHHHHHHhCCCeEE
Q 018213 163 DVSTVDGDTSKLINGHIKATGASFLE-APVSGSK--------KPAEDGQLIFLAAG---DKSLYNTVAPLLDIMGKSRFY 230 (359)
Q Consensus 163 ~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~--------~~~~~~~~~~~~~g---~~~~~~~v~~ll~~lg~~~~~ 230 (359)
|+++.+....+.+.+.+. .+..|++ ||++|++ .....+..++++.. +.+.++.+.++++.+|.+++.
T Consensus 77 Dv~SvK~~~~~~~~~~~~-~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~ 155 (258)
T PF02153_consen 77 DVGSVKAPIVEAMERLLP-EGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEALGARVVE 155 (258)
T ss_dssp E--S-CHHHHHHHHHHHT-SSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHHCT-EEEE
T ss_pred EeCCCCHHHHHHHHHhcC-cccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHHCCCEEEE
Confidence 999999888878877765 6778887 9999983 33445777777754 467889999999999999988
Q ss_pred eCccChHHHHHHHHHHHHHHHHHHHHH
Q 018213 231 LGDVGNGAAMKLVVNMIMGSMMATFSE 257 (359)
Q Consensus 231 ~g~~~~~~~~kl~~n~~~~~~~~~~~E 257 (359)
+....+...+..++. +-+.+..++..
T Consensus 156 ~~~eeHD~~~A~vsh-lpH~~a~al~~ 181 (258)
T PF02153_consen 156 MDAEEHDRIMAYVSH-LPHLLASALAN 181 (258)
T ss_dssp --HHHHHHHHHHHTH-HHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 877665555555443 33444333333
No 115
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=99.46 E-value=1.5e-13 Score=113.67 Aligned_cols=136 Identities=17% Similarity=0.262 Sum_probs=100.4
Q ss_pred eEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCC--------------CccCCCHHHHhhcCCEEEEeeCCh
Q 018213 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLG--------------AKYQPSPDEVAASCDVTFAMLADP 138 (359)
Q Consensus 73 ~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g--------------~~~~~~~~~~~~~aDivi~~~p~~ 138 (359)
||+|||.|++|.++|..|+.+|++|++|.|+++..+.+.+.+ +...++++++++++|+|++++| +
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavP-s 79 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVP-S 79 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S--G
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEeccc-H
Confidence 699999999999999999999999999999987777666432 3356789999999999999998 7
Q ss_pred hHHHHHhcccccccccCCCCCEEEeccCCC-h----HHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecCCHH
Q 018213 139 ESAMDVACGKHGAASGMGPGKGYVDVSTVD-G----DTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAGDKS 212 (359)
Q Consensus 139 ~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~-~----~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 212 (359)
...+.++ +++.+.++++..+|.++.|- . ...+.+.+.+....+.++..|.+..+........+.+.+.+.+
T Consensus 80 ~~~~~~~---~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~~~~~lsGP~~A~Ei~~~~pt~~~~as~~~~ 155 (157)
T PF01210_consen 80 QAHREVL---EQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEILPIPRIAVLSGPSFAEEIAEGKPTAVVIASKNEE 155 (157)
T ss_dssp GGHHHHH---HHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHHSSCGEEEEESS--HHHHHTT--EEEEEEESSHH
T ss_pred HHHHHHH---HHHhhccCCCCEEEEecCCcccCCCccHHHHHHHHhhhcceEEeeCccHHHHHHcCCCeEEEEEecccc
Confidence 7889998 88999999999999997764 1 2344555556555577888898877766666666666665554
No 116
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.43 E-value=4.6e-12 Score=128.58 Aligned_cols=187 Identities=14% Similarity=0.111 Sum_probs=135.7
Q ss_pred CeEEEEcCChhhHHHHHHHH-HCCCcEEEEcCCccchhHHH-----------hC-------------CCccCCCHHHHhh
Q 018213 72 GRIGFLGMGIMGTPMAQNLL-KAGCDVTVWNRTKSKCDPLI-----------SL-------------GAKYQPSPDEVAA 126 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~-~~g~~V~~~d~~~~~~~~~~-----------~~-------------g~~~~~~~~~~~~ 126 (359)
++|+|||+|.||..||..++ ..|++|+++|++++..+... +. .+..++++ +.++
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 388 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK 388 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence 68999999999999999998 88999999999876543321 11 23445566 4568
Q ss_pred cCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEE
Q 018213 127 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFL 206 (359)
Q Consensus 127 ~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (359)
+||+||.++|+..+++.-+| .++-+.+++++++...+++-+. ..+.+.+... -+++..+.+.++... +++-+
T Consensus 389 ~aDlViEav~E~~~~K~~v~--~~le~~~~~~~ilasnTS~l~i--~~la~~~~~p-~r~ig~Hff~P~~~~---~lVEv 460 (708)
T PRK11154 389 HADVVIEAVFEDLALKQQMV--AEVEQNCAPHTIFASNTSSLPI--GQIAAAAARP-EQVIGLHYFSPVEKM---PLVEV 460 (708)
T ss_pred cCCEEeecccccHHHHHHHH--HHHHhhCCCCcEEEECCCCCCH--HHHHHhcCcc-cceEEEecCCccccC---ceEEE
Confidence 99999999999999987764 6677778899988855555444 3466665432 355555555433322 34444
Q ss_pred ecC---CHHHHHHHHHHHHHhCCCeEEeCc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 018213 207 AAG---DKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVS 277 (359)
Q Consensus 207 ~~g---~~~~~~~v~~ll~~lg~~~~~~g~-~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~ 277 (359)
+.+ +++.++.+..++..+|+.++.+.+ +| .+.|-+... .++|++.++++ |+++++++.++.
T Consensus 461 v~g~~Ts~~~~~~~~~~~~~~gk~pv~v~d~pG------fi~nRl~~~---~~~EA~~lv~e-Gv~~~dID~a~~ 525 (708)
T PRK11154 461 IPHAKTSAETIATTVALAKKQGKTPIVVRDGAG------FYVNRILAP---YINEAARLLLE-GEPIEHIDAALV 525 (708)
T ss_pred ECCCCCCHHHHHHHHHHHHHcCCceEEEeccCc------HHHHHHHHH---HHHHHHHHHHc-CCCHHHHHHHHH
Confidence 443 789999999999999999998877 66 455544443 35699888886 789999998876
No 117
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=99.43 E-value=2.9e-12 Score=130.10 Aligned_cols=187 Identities=15% Similarity=0.120 Sum_probs=134.9
Q ss_pred CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHH-----------hC-------------CCccCCCHHHHhhc
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLI-----------SL-------------GAKYQPSPDEVAAS 127 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~-----------~~-------------g~~~~~~~~~~~~~ 127 (359)
++|+|||+|.||..||..++..|++|+++|++++..+... +. .+....+++ .+++
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 414 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS-GFKN 414 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence 6799999999999999999999999999999987644311 11 234455665 4689
Q ss_pred CCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEe
Q 018213 128 CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLA 207 (359)
Q Consensus 128 aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (359)
||+||.++|+..+++.-+| .++-+.+++++++...+++-+ ...+.+.+... -++++.+.+.++... +++-++
T Consensus 415 aDlViEAv~E~l~~K~~vf--~~l~~~~~~~~ilasNTSsl~--i~~la~~~~~p-~r~ig~Hff~P~~~m---~LvEvv 486 (737)
T TIGR02441 415 ADMVIEAVFEDLSLKHKVI--KEVEAVVPPHCIIASNTSALP--IKDIAAVSSRP-EKVIGMHYFSPVDKM---QLLEII 486 (737)
T ss_pred CCeehhhccccHHHHHHHH--HHHHhhCCCCcEEEEcCCCCC--HHHHHhhcCCc-cceEEEeccCCcccC---ceEEEe
Confidence 9999999999999987774 677778889988874444433 34566665432 245554444333222 334444
Q ss_pred cC---CHHHHHHHHHHHHHhCCCeEEeCc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 018213 208 AG---DKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVS 277 (359)
Q Consensus 208 ~g---~~~~~~~v~~ll~~lg~~~~~~g~-~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~ 277 (359)
.+ +++.++.+..++..+|+.++.+++ +| ++.|-+.. ..+.|++.+.++ |+++++++.++.
T Consensus 487 ~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pG------Fi~NRi~~---~~~~ea~~lv~e-Gv~~~~ID~a~~ 550 (737)
T TIGR02441 487 THDGTSKDTLASAVAVGLKQGKVVIVVKDGPG------FYTTRCLG---PMLAEVIRLLQE-GVDPKKLDKLTT 550 (737)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCeEEEECCcCC------chHHHHHH---HHHHHHHHHHHc-CCCHHHHHHHHH
Confidence 43 789999999999999999999988 66 45555444 346788888766 789999999864
No 118
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=99.42 E-value=6.2e-12 Score=127.33 Aligned_cols=187 Identities=13% Similarity=0.112 Sum_probs=133.8
Q ss_pred CeEEEEcCChhhHHHHHHHH-HCCCcEEEEcCCccchhHHH-----------hC-------------CCccCCCHHHHhh
Q 018213 72 GRIGFLGMGIMGTPMAQNLL-KAGCDVTVWNRTKSKCDPLI-----------SL-------------GAKYQPSPDEVAA 126 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~-~~g~~V~~~d~~~~~~~~~~-----------~~-------------g~~~~~~~~~~~~ 126 (359)
++|+|||+|.||..||..++ ..|++|++||++++..+... +. .+...++++ .++
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~ 383 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYR-GFK 383 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChH-Hhc
Confidence 68999999999999999998 58999999999986543211 11 234455664 568
Q ss_pred cCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEE
Q 018213 127 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFL 206 (359)
Q Consensus 127 ~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (359)
+||+||.++|...+++.-+| .++-..+++++++...+++-+. ..+.+.+... -+++..+.+.++... +++-+
T Consensus 384 ~adlViEav~E~l~~K~~v~--~~l~~~~~~~~ilasnTS~l~i--~~la~~~~~p-~r~~g~HffnP~~~~---~lVEv 455 (699)
T TIGR02440 384 DVDIVIEAVFEDLALKHQMV--KDIEQECAAHTIFASNTSSLPI--GQIAAAASRP-ENVIGLHYFSPVEKM---PLVEV 455 (699)
T ss_pred cCCEEEEeccccHHHHHHHH--HHHHhhCCCCcEEEeCCCCCCH--HHHHHhcCCc-ccEEEEecCCccccC---ceEEE
Confidence 99999999999999987664 6677778888888755444444 3566666432 245554444333221 34444
Q ss_pred ecC---CHHHHHHHHHHHHHhCCCeEEeCc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 018213 207 AAG---DKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVS 277 (359)
Q Consensus 207 ~~g---~~~~~~~v~~ll~~lg~~~~~~g~-~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~ 277 (359)
+.+ +++.++.+..+++.+|+.++.+.+ +| .+.|-+.. ..+.|++.+.++ |+++++++.++.
T Consensus 456 v~g~~T~~~~~~~~~~~~~~~gk~pv~v~d~pG------fi~nRl~~---~~~~Ea~~l~~~-G~~~~dID~a~~ 520 (699)
T TIGR02440 456 IPHAGTSEQTIATTVALAKKQGKTPIVVADKAG------FYVNRILA---PYMNEAARLLLE-GEPVEHIDKALV 520 (699)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCeEEEEccccc------hHHHHHHH---HHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 443 789999999999999999999977 65 44454444 346699888774 689999999885
No 119
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=99.41 E-value=4.3e-13 Score=126.99 Aligned_cols=104 Identities=15% Similarity=0.103 Sum_probs=83.1
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhccc
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK 148 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~ 148 (359)
+.+++|+|||+|.||+.+|+++..+|++|+++++++.+.......|+... +++++++.+|+|++|+. +++++ +
T Consensus 252 LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~~-~leell~~ADIVI~atG----t~~iI--~ 324 (476)
T PTZ00075 252 IAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQVV-TLEDVVETADIFVTATG----NKDII--T 324 (476)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCceec-cHHHHHhcCCEEEECCC----ccccc--C
Confidence 77899999999999999999999999999999988766544444566543 78999999999999863 45677 5
Q ss_pred ccccccCCCCCEEEeccCCChHHHHHHHHHHHhc
Q 018213 149 HGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT 182 (359)
Q Consensus 149 ~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~ 182 (359)
.+.+..|++|++++|++++. .+...+.++..
T Consensus 325 ~e~~~~MKpGAiLINvGr~d---~Ei~i~aL~~~ 355 (476)
T PTZ00075 325 LEHMRRMKNNAIVGNIGHFD---NEIQVAELEAY 355 (476)
T ss_pred HHHHhccCCCcEEEEcCCCc---hHHhHHHHHhc
Confidence 67788999999999999984 33344555543
No 120
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=99.41 E-value=1.3e-11 Score=112.85 Aligned_cols=245 Identities=18% Similarity=0.166 Sum_probs=155.3
Q ss_pred hhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCc--------------cCCCHHHHhhcCCEEEEeeCChhHHHHHhc
Q 018213 81 IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAK--------------YQPSPDEVAASCDVTFAMLADPESAMDVAC 146 (359)
Q Consensus 81 ~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~--------------~~~~~~~~~~~aDivi~~~p~~~~~~~~~~ 146 (359)
.||..+|..|++.|++|++++|+ +..+.+.+.|+. ..+++++ ....|+|+++++ ..++..++
T Consensus 1 aiG~~~a~~L~~~G~~V~l~~r~-~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~-~~~~D~iiv~vK-s~~~~~~l- 76 (293)
T TIGR00745 1 AVGSLYGAYLARAGHDVTLLARG-EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE-LPPADLVIITVK-AYQTEEAA- 76 (293)
T ss_pred CchHHHHHHHHhCCCcEEEEecH-HHHHHHHHCCcEEEecCCcEEEcccccccChhh-cCCCCEEEEecc-chhHHHHH-
Confidence 37999999999999999999997 455566554431 1223344 568999999994 77889888
Q ss_pred ccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcC----CeeecCCCCCCCccccCCceEEEecC---CHHHHHHHHH
Q 018213 147 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATG----ASFLEAPVSGSKKPAEDGQLIFLAAG---DKSLYNTVAP 219 (359)
Q Consensus 147 ~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~v~~ 219 (359)
+.+.+.+.++++|+.+.+|-.. .+.+.+.+.... +.+.++...++......+...+.++. ..+..+.+.+
T Consensus 77 --~~l~~~l~~~~~iv~~qNG~g~-~~~l~~~~~~~~v~~g~~~~~~~~~~pg~v~~~~~~~~~iG~~~~~~~~~~~l~~ 153 (293)
T TIGR00745 77 --ALLLPLIGKNTKVLFLQNGLGH-EERLRELLPARRILGGVVTHGAVREEPGVVHHAGLGATKIGDYVGENEAVEALAE 153 (293)
T ss_pred --HHhHhhcCCCCEEEEccCCCCC-HHHHHHHhCccCEEEEEEEEeeEEcCCcEEEEeccccEEEecCCCchHHHHHHHH
Confidence 7888888888999888776433 335555553321 22222222221111111111122332 2245667788
Q ss_pred HHHHhCCCeEEeCccChHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHcCCC--HHHHHHHH
Q 018213 220 LLDIMGKSRFYLGDVGNGAAMKLVVNMIMGS---------------------MMATFSEGLLHSEKVGLD--PNVLVEVV 276 (359)
Q Consensus 220 ll~~lg~~~~~~g~~~~~~~~kl~~n~~~~~---------------------~~~~~~Ea~~l~~~~Gi~--~~~~~~~~ 276 (359)
+|+..+..+....+.....|.|++.|...+. +..++.|+..++++.|++ .+.+.+.+
T Consensus 154 ~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~~~~~~~~ 233 (293)
T TIGR00745 154 LLNEAGIPAELHGDILAAIWKKLLVNAAINPLTALLDCKNGELLENPEARELLRRLMDEVVRVARAEGVDLPDDEVEELV 233 (293)
T ss_pred HHHhCCCCCEecchHHHHHHHHHhheechhHHHHHHCCccceeccChhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 8888888888888888899999998864443 345788999999999975 33344444
Q ss_pred hhccccchhhhhcccccccCCCCCC--cchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 018213 277 SQGAISAPMYSLKGPSMIESLYPTA--FPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAK 339 (359)
Q Consensus 277 ~~~~~~s~~~~~~~~~~~~~~~~~~--~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~ 339 (359)
.......+ ...++|.++ +..+ ..++.. .+.+++.++++|+++|.++.++++++...
T Consensus 234 ~~~~~~~~---~~~sSm~~D-~~~gr~tEid~i---~G~~v~~a~~~gv~~P~~~~l~~~~~~~e 291 (293)
T TIGR00745 234 RAVIRMTA---ENTSSMLQD-LLRGRRTEIDAI---NGAVVRLAEKLGIDAPVNRTLYALLKALE 291 (293)
T ss_pred HHHHhcCC---CCCChHHHH-HHcCCcchHHHh---ccHHHHHHHHcCCCCChHHHHHHHHHHhh
Confidence 32210000 011233322 2111 124444 68899999999999999999999987654
No 121
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=99.38 E-value=1.4e-12 Score=110.51 Aligned_cols=118 Identities=21% Similarity=0.266 Sum_probs=81.1
Q ss_pred CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC--------------------CCccCCCHHHHhhcCCEE
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--------------------GAKYQPSPDEVAASCDVT 131 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~--------------------g~~~~~~~~~~~~~aDiv 131 (359)
|||+|||+|.+|..+|..|+..|++|+++|.++++.+.+.+. ......+.++.+.++|++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~ 80 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVV 80 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEE
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceE
Confidence 789999999999999999999999999999999877765531 124556778888999999
Q ss_pred EEeeCChh---------HHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHH-HHHhcC-----CeeecCCCC
Q 018213 132 FAMLADPE---------SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLING-HIKATG-----ASFLEAPVS 192 (359)
Q Consensus 132 i~~~p~~~---------~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~-~l~~~~-----~~~~~~~~~ 192 (359)
++|+|.+. .+..++ +.+.+.++++.++|.-|+.+|.+.+.+.. .+++.+ +.+...|-+
T Consensus 81 ~I~VpTP~~~~~~~Dls~v~~a~---~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PEr 153 (185)
T PF03721_consen 81 FICVPTPSDEDGSPDLSYVESAI---ESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPER 153 (185)
T ss_dssp EE----EBETTTSBETHHHHHHH---HHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE----
T ss_pred EEecCCCccccCCccHHHHHHHH---HHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCc
Confidence 99998653 355566 77778889999999999999999985554 444333 344456654
No 122
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=99.38 E-value=1.5e-12 Score=109.10 Aligned_cols=196 Identities=13% Similarity=0.139 Sum_probs=136.9
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHh-----------C------------------CCccCC
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-----------L------------------GAKYQP 119 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~-----------~------------------g~~~~~ 119 (359)
...+.|+|||.|.||+.||+..+..|++|+++|++.+.+.+..+ . .++...
T Consensus 9 ~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~t 88 (298)
T KOG2304|consen 9 AEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTST 88 (298)
T ss_pred ccccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcC
Confidence 34467999999999999999999999999999998875543221 0 123456
Q ss_pred CHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhc----CCeeec-CCCCCC
Q 018213 120 SPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT----GASFLE-APVSGS 194 (359)
Q Consensus 120 ~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~----~~~~~~-~~~~~~ 194 (359)
+..+++.++|+||.++-.+..++.-+| +++-...++.+++. ++.+.....++...+++. |++|+. .|++.-
T Consensus 89 nv~~~v~dadliiEAivEn~diK~~lF--~~l~~~ak~~~il~--tNTSSl~lt~ia~~~~~~srf~GlHFfNPvPvMKL 164 (298)
T KOG2304|consen 89 NVSDAVSDADLIIEAIVENLDIKRKLF--KDLDKIAKSSTILA--TNTSSLSLTDIASATQRPSRFAGLHFFNPVPVMKL 164 (298)
T ss_pred CHHHhhhhhHHHHHHHHHhHHHHHHHH--HHHHhhcccceEEe--ecccceeHHHHHhhccChhhhceeeccCCchhHHH
Confidence 778888899999998877777776554 55555566666665 233333334555555442 666665 444432
Q ss_pred CccccCCceEEEecCCHHHHHHHHHHHHHhCCCeEEeCc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 018213 195 KKPAEDGQLIFLAAGDKSLYNTVAPLLDIMGKSRFYLGD-VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLV 273 (359)
Q Consensus 195 ~~~~~~~~~~~~~~g~~~~~~~v~~ll~~lg~~~~~~g~-~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~ 273 (359)
..... -...+++.+..+..+-+.+|+.++.+.+ +| .+.|-++-. .+.|+.++.++...+.++++
T Consensus 165 vEVir------~~~TS~eTf~~l~~f~k~~gKttVackDtpG------FIVNRlLiP---yl~ea~r~yerGdAskeDID 229 (298)
T KOG2304|consen 165 VEVIR------TDDTSDETFNALVDFGKAVGKTTVACKDTPG------FIVNRLLIP---YLMEAIRMYERGDASKEDID 229 (298)
T ss_pred hhhhc------CCCCCHHHHHHHHHHHHHhCCCceeecCCCc------hhhhHHHHH---HHHHHHHHHHhcCCcHhhHH
Confidence 21111 1123688999999999999999999988 77 443433222 24599999999999999999
Q ss_pred HHHhhccccc
Q 018213 274 EVVSQGAISA 283 (359)
Q Consensus 274 ~~~~~~~~~s 283 (359)
..+..++++.
T Consensus 230 taMklGagyP 239 (298)
T KOG2304|consen 230 TAMKLGAGYP 239 (298)
T ss_pred HHHhccCCCC
Confidence 9999887663
No 123
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=99.35 E-value=7.6e-13 Score=104.20 Aligned_cols=112 Identities=25% Similarity=0.369 Sum_probs=71.8
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCCcEEE-EcCCccchhHHHhC-CCccCCCHHHHhhcCCEEEEeeCChhHHHHHhc
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTV-WNRTKSKCDPLISL-GAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 146 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~-~d~~~~~~~~~~~~-g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~ 146 (359)
...+||+|||+|++|..+++.|.+.|++|.. |+|+.+..+.+... +...+.+++|+++++|++++++|+ ..+..+.
T Consensus 8 ~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpD-daI~~va- 85 (127)
T PF10727_consen 8 AARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPD-DAIAEVA- 85 (127)
T ss_dssp ----EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-C-CHHHHHH-
T ss_pred CCccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEech-HHHHHHH-
Confidence 3458999999999999999999999999875 57776555554432 334455778899999999999985 5888887
Q ss_pred cccccccc--CCCCCEEEeccCCChHHHHHHHHHHHhcCCeee
Q 018213 147 GKHGAASG--MGPGKGYVDVSTVDGDTSKLINGHIKATGASFL 187 (359)
Q Consensus 147 ~~~~~~~~--l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~ 187 (359)
+++... .++|++|+.||-.... ++.+.+++.|....
T Consensus 86 --~~La~~~~~~~g~iVvHtSGa~~~---~vL~p~~~~Ga~~~ 123 (127)
T PF10727_consen 86 --EQLAQYGAWRPGQIVVHTSGALGS---DVLAPARERGAIVA 123 (127)
T ss_dssp --HHHHCC--S-TT-EEEES-SS--G---GGGHHHHHTT-EEE
T ss_pred --HHHHHhccCCCCcEEEECCCCChH---HhhhhHHHCCCeEE
Confidence 777665 7899999999776654 34455556665443
No 124
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=99.34 E-value=6.8e-11 Score=104.94 Aligned_cols=159 Identities=17% Similarity=0.168 Sum_probs=122.1
Q ss_pred CCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhh-cCCEEEEeeCChhHHHHHhccc
Q 018213 70 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAA-SCDVTFAMLADPESAMDVACGK 148 (359)
Q Consensus 70 ~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aDivi~~~p~~~~~~~~~~~~ 148 (359)
...+|||||+|+||+-+|+.+...||.|+.++|+. -.......|...++.+.+++. .+|+|++|+ .-..++.++
T Consensus 51 ~tl~IaIIGfGnmGqflAetli~aGh~li~hsRsd-yssaa~~yg~~~ft~lhdlcerhpDvvLlct-silsiekil--- 125 (480)
T KOG2380|consen 51 ATLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSD-YSSAAEKYGSAKFTLLHDLCERHPDVVLLCT-SILSIEKIL--- 125 (480)
T ss_pred cceEEEEEecCcHHHHHHHHHHhcCceeEecCcch-hHHHHHHhcccccccHHHHHhcCCCEEEEEe-hhhhHHHHH---
Confidence 34689999999999999999999999999999975 333344457777888888775 689999999 577888888
Q ss_pred cccccc-CCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec-CCCCCCCccccCCc--eEEEe---cC----CHHHHHHH
Q 018213 149 HGAASG-MGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPAEDGQ--LIFLA---AG----DKSLYNTV 217 (359)
Q Consensus 149 ~~~~~~-l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~---~g----~~~~~~~v 217 (359)
+..-.+ ++.|+++++..+...-....+.+.|. +....+. +|++|+........ ..++. .+ .++.++.+
T Consensus 126 atypfqrlrrgtlfvdvlSvKefek~lfekYLP-kdfDIlctHpmfGPksvnh~wqglpfVydkvRig~~~~r~ercE~f 204 (480)
T KOG2380|consen 126 ATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLP-KDFDILCTHPMFGPKSVNHEWQGLPFVYDKVRIGYAASRPERCEFF 204 (480)
T ss_pred HhcCchhhccceeEeeeeecchhHHHHHHHhCc-cccceEeecCCcCCCcCCCccccCceEEEEeeccccccchHHHHHH
Confidence 555444 89999999999988877777888775 4455554 88998874433322 22222 13 37889999
Q ss_pred HHHHHHhCCCeEEeCcc
Q 018213 218 APLLDIMGKSRFYLGDV 234 (359)
Q Consensus 218 ~~ll~~lg~~~~~~g~~ 234 (359)
.+++...|.+.+++.-.
T Consensus 205 leIf~cegckmVemS~e 221 (480)
T KOG2380|consen 205 LEIFACEGCKMVEMSYE 221 (480)
T ss_pred HHHHHhcCCeEEEEEee
Confidence 99999999998887553
No 125
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=99.25 E-value=2.8e-11 Score=109.69 Aligned_cols=112 Identities=21% Similarity=0.235 Sum_probs=86.3
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccC--CCHHHHhhcCCEEEEeeCChhHHHHHhc
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ--PSPDEVAASCDVTFAMLADPESAMDVAC 146 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~--~~~~~~~~~aDivi~~~p~~~~~~~~~~ 146 (359)
+++++++|+|+|.||+.+|+.|..+|++|++++|++++.....+.+.... .+++++++++|+|+.++|.+ ++
T Consensus 149 l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~-----ii- 222 (287)
T TIGR02853 149 IHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPAL-----VL- 222 (287)
T ss_pred CCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCChH-----Hh-
Confidence 77899999999999999999999999999999999876655555554432 35677889999999999864 33
Q ss_pred ccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCC
Q 018213 147 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAP 190 (359)
Q Consensus 147 ~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~ 190 (359)
+++.++.|+++.++||+++.+..+. + +..++.|+..+-+|
T Consensus 223 -~~~~l~~~k~~aliIDlas~Pg~td--f-~~Ak~~G~~a~~~~ 262 (287)
T TIGR02853 223 -TADVLSKLPKHAVIIDLASKPGGTD--F-EYAKKRGIKALLAP 262 (287)
T ss_pred -CHHHHhcCCCCeEEEEeCcCCCCCC--H-HHHHHCCCEEEEeC
Confidence 3455677899999999988654432 3 45667777666444
No 126
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=99.20 E-value=5.3e-10 Score=99.37 Aligned_cols=226 Identities=16% Similarity=0.182 Sum_probs=144.6
Q ss_pred CCcEEEEcCCccchhHHHh-CCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHH
Q 018213 94 GCDVTVWNRTKSKCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTS 172 (359)
Q Consensus 94 g~~V~~~d~~~~~~~~~~~-~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~ 172 (359)
.++|++++|++++.+.+.+ .|+....+..++++++|+||+|++ +..+..++ +++.+.+.++++||+++.+-+.
T Consensus 9 ~~~I~v~~R~~e~~~~l~~~~g~~~~~~~~e~~~~aDiIiLaVk-P~~i~~vl---~~l~~~~~~~~~ivS~~agi~~-- 82 (245)
T TIGR00112 9 AYDIIVINRSPEKLAALAKELGIVASSDAQEAVKEADVVFLAVK-PQDLEEVL---SELKSEKGKDKLLISIAAGVTL-- 82 (245)
T ss_pred CCeEEEEcCCHHHHHHHHHHcCcEEeCChHHHHhhCCEEEEEeC-HHHHHHHH---HHHhhhccCCCEEEEecCCCCH--
Confidence 3689999999888777655 477778888899999999999996 89999988 7776656678899988766554
Q ss_pred HHHHHHHHhcCCeeec-CCCCCCCccccCCceEEEecC--CHHHHHHHHHHHHHhCCCeEEeCc--cChHHHHHHHHHHH
Q 018213 173 KLINGHIKATGASFLE-APVSGSKKPAEDGQLIFLAAG--DKSLYNTVAPLLDIMGKSRFYLGD--VGNGAAMKLVVNMI 247 (359)
Q Consensus 173 ~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g--~~~~~~~v~~ll~~lg~~~~~~g~--~~~~~~~kl~~n~~ 247 (359)
+.+.+.+... ..++- .|.. +.....+...+..+. +++..+.++.+|+.+|...+ +.+ ......+.-....+
T Consensus 83 ~~l~~~~~~~-~~ivR~mPn~--~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~-v~E~~~~~~talsgsgPA~ 158 (245)
T TIGR00112 83 EKLSQLLGGT-RRVVRVMPNT--PAKVGAGVTAIAANANVSEEDRALVLALFKAVGEVVE-LPEALMDAVTALSGSGPAY 158 (245)
T ss_pred HHHHHHcCCC-CeEEEECCCh--HHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCCEEE-ECHHHcchHHhhccCcHHH
Confidence 3466666322 22222 3332 122223444333332 56677899999999997554 444 33233333344555
Q ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccc-cchhhhhc--ccc-cccCCCCCCcchhHHHHHHHHHHHHHHhcCC
Q 018213 248 MGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAI-SAPMYSLK--GPS-MIESLYPTAFPLKHQQKDLRLALGLAESVSQ 323 (359)
Q Consensus 248 ~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~-~s~~~~~~--~~~-~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~ 323 (359)
.+.++..+.++ +.+.|+++++..+++.++.. ...+.... .+. +.+.-..|+.+.. ..++..++.|+
T Consensus 159 ~~~~~~al~~~---~v~~Gl~~~~A~~lv~~~~~G~a~l~~~~~~~~~~l~~~v~spgGtT~-------~gl~~Le~~~~ 228 (245)
T TIGR00112 159 VFLFIEALADA---GVKQGLPRELALELAAQTVKGAAKLLEESGEHPALLKDQVTSPGGTTI-------AGLAVLEEKGV 228 (245)
T ss_pred HHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHcCCCCcHHHH-------HHHHHHHHCCh
Confidence 55555555554 48899999999999987643 22233221 111 2222234443333 34566788888
Q ss_pred CchHHHHHHHHHHHHH
Q 018213 324 STPIAAAANELYKVAK 339 (359)
Q Consensus 324 ~~p~~~~~~~~~~~a~ 339 (359)
..-+.+++.+.++++.
T Consensus 229 ~~~~~~a~~aa~~r~~ 244 (245)
T TIGR00112 229 RGAVIEAVEAAVRRSR 244 (245)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 8888888888877653
No 127
>PRK06444 prephenate dehydrogenase; Provisional
Probab=99.18 E-value=3.7e-09 Score=89.98 Aligned_cols=128 Identities=13% Similarity=0.192 Sum_probs=91.5
Q ss_pred CeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhccccc
Q 018213 72 GRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG 150 (359)
Q Consensus 72 ~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~ 150 (359)
|+|+|||. |.||+.+++.|.+.|+.|. +++||+|++|+| ...+..++ ++
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~--------------------------~~~~DlVilavP-v~~~~~~i---~~ 50 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVY--------------------------IKKADHAFLSVP-IDAALNYI---ES 50 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEE--------------------------ECCCCEEEEeCC-HHHHHHHH---HH
Confidence 57999998 9999999999999999985 258999999998 66777777 44
Q ss_pred ccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec-CCCCCCCccccC-CceEEEec--CCHHHHHHHHHHHHHhCC
Q 018213 151 AASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPAED-GQLIFLAA--GDKSLYNTVAPLLDIMGK 226 (359)
Q Consensus 151 ~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~--g~~~~~~~v~~ll~~lg~ 226 (359)
+. .+++|+++.+.... +. ...|++ ||++|+...... ....+++. .+++..+.++++++ |.
T Consensus 51 ~~------~~v~Dv~SvK~~i~----~~----~~~~vg~HPMfGp~~a~~~lf~~~iv~~~~~~~~~~~~~~~l~~--G~ 114 (197)
T PRK06444 51 YD------NNFVEISSVKWPFK----KY----SGKIVSIHPLFGPMSYNDGVHRTVIFINDISRDNYLNEINEMFR--GY 114 (197)
T ss_pred hC------CeEEeccccCHHHH----Hh----cCCEEecCCCCCCCcCcccccceEEEECCCCCHHHHHHHHHHHc--CC
Confidence 42 37999998877422 21 346777 999985543321 12223332 25566788899988 78
Q ss_pred CeEEeCccChHHHHHHHHH
Q 018213 227 SRFYLGDVGNGAAMKLVVN 245 (359)
Q Consensus 227 ~~~~~g~~~~~~~~kl~~n 245 (359)
+++.+.+..+...+..++.
T Consensus 115 ~~~~~t~eeHD~~~A~ish 133 (197)
T PRK06444 115 HFVEMTADEHDLLMSEIMV 133 (197)
T ss_pred EEEEeCHHHHHHHHHHHHH
Confidence 8888877766666655543
No 128
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=99.17 E-value=6.4e-09 Score=89.15 Aligned_cols=191 Identities=16% Similarity=0.206 Sum_probs=130.2
Q ss_pred CeEEEEcCChh--------------------hHHHHHHHHHCCCcEEEEcCCccc-----hhHHHhCCCccCCCHHHHhh
Q 018213 72 GRIGFLGMGIM--------------------GTPMAQNLLKAGCDVTVWNRTKSK-----CDPLISLGAKYQPSPDEVAA 126 (359)
Q Consensus 72 ~~igiiG~G~i--------------------G~~ia~~l~~~g~~V~~~d~~~~~-----~~~~~~~g~~~~~~~~~~~~ 126 (359)
|||.|.|+|+- |..+|-.++..||+|.+.+++.+- .+...+.|++.+++..+.++
T Consensus 2 mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa~ 81 (340)
T COG4007 2 MKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAAE 81 (340)
T ss_pred ceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhhh
Confidence 67888888875 788999999999999999987653 33455679999999999999
Q ss_pred cCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHH-HHHHHHHHhc----CCee-ecCCCCCCCccccC
Q 018213 127 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTS-KLINGHIKAT----GASF-LEAPVSGSKKPAED 200 (359)
Q Consensus 127 ~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~-~~l~~~l~~~----~~~~-~~~~~~~~~~~~~~ 200 (359)
.+++.++.+|....|-.+. +++++.++.|+++.|+++.+|... ..|...|+.+ |+.- ..+.+-|.+. .
T Consensus 82 ~~Ei~VLFTPFGk~T~~Ia---rei~~hvpEgAVicnTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvPGtp~---h 155 (340)
T COG4007 82 HGEIHVLFTPFGKATFGIA---REILEHVPEGAVICNTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVPGTPQ---H 155 (340)
T ss_pred cceEEEEecccchhhHHHH---HHHHhhCcCCcEecccccCchhHHHHHhhhhhcCchhhcCccccCCCCCCCCCC---C
Confidence 9999999999999999998 999999999999999999987642 3333344322 3321 2233333332 2
Q ss_pred CceEEEec--------CCHHHHHHHHHHHHHhCCCeEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHH
Q 018213 201 GQLIFLAA--------GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSE-KVGLDPN 270 (359)
Q Consensus 201 ~~~~~~~~--------g~~~~~~~v~~ll~~lg~~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~-~~Gi~~~ 270 (359)
+.. ++.+ ..++..++..++.++.|+.++.+.. ..-.+..-....+....+.++.+-+.+.. -.|.+.+
T Consensus 156 ~~y-viagr~t~g~elATeEQi~r~velaes~Gk~~yv~pa-dv~s~VaDmg~lvtav~l~gvldyy~Vg~qIi~AP~e 232 (340)
T COG4007 156 GHY-VIAGRSTEGKELATEEQIERCVELAESTGKEVYVLPA-DVVSAVADMGVLVTAVALSGVLDYYYVGTQIIGAPKE 232 (340)
T ss_pred ceE-EEeccCCCceeeccHHHHHHHHHHHHhcCCceEecCH-HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhCCcHH
Confidence 222 2222 1678889999999999999887764 21222222223344444455555555544 3455443
No 129
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=99.17 E-value=1.9e-09 Score=96.28 Aligned_cols=277 Identities=15% Similarity=0.093 Sum_probs=164.5
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHC-------CCcEEEEcCCccchh---HHHh------------------CCCccCCC
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKA-------GCDVTVWNRTKSKCD---PLIS------------------LGAKYQPS 120 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~-------g~~V~~~d~~~~~~~---~~~~------------------~g~~~~~~ 120 (359)
....+|+|||.|++|+++|+.+... ..+|..|-+..+... .+.+ .++...++
T Consensus 19 ~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~d 98 (372)
T KOG2711|consen 19 RDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPD 98 (372)
T ss_pred cCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecch
Confidence 4457899999999999999998652 235666654322111 1111 02345778
Q ss_pred HHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChH---------HHHHHHHHHHhcCCeeecCCC
Q 018213 121 PDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGD---------TSKLINGHIKATGASFLEAPV 191 (359)
Q Consensus 121 ~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~---------~~~~l~~~l~~~~~~~~~~~~ 191 (359)
+.+++++|||++..+| .+.+..++ +++...++++...|.++.|-.. .++.+.+++ .-...++..+.
T Consensus 99 l~ea~~dADilvf~vP-hQf~~~ic---~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~l-gI~~~vL~GaN 173 (372)
T KOG2711|consen 99 LVEAAKDADILVFVVP-HQFIPRIC---EQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRAL-GIPCSVLMGAN 173 (372)
T ss_pred HHHHhccCCEEEEeCC-hhhHHHHH---HHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHHHh-CCCceeecCCc
Confidence 9999999999999998 67888888 8899999999999988655221 223333333 22345666676
Q ss_pred CCCCccccCCceEEEecCCH-HHHHHHHHHHHHhCCCeEEeCc---cChHHHHHHH--------------HHHHHHHHHH
Q 018213 192 SGSKKPAEDGQLIFLAAGDK-SLYNTVAPLLDIMGKSRFYLGD---VGNGAAMKLV--------------VNMIMGSMMA 253 (359)
Q Consensus 192 ~~~~~~~~~~~~~~~~~g~~-~~~~~v~~ll~~lg~~~~~~g~---~~~~~~~kl~--------------~n~~~~~~~~ 253 (359)
++.+.....-....+...++ +.-..+..+|+.-.++++...+ .....++|-+ .|.-.+.+..
T Consensus 174 iA~EVa~~~f~e~tIg~~~~~~~~~~l~~lf~~p~FrV~~~~D~~~VEi~GaLKNVvAiaaGfvdGL~~g~NTkaAi~r~ 253 (372)
T KOG2711|consen 174 IASEVANEKFCETTIGYKDKKEAGILLKKLFRTPYFRVVVVEDADGVEICGALKNVVAIAAGFVDGLGLGNNTKAAIIRL 253 (372)
T ss_pred hHHHHHhccccceeEeccchhhcchHHHHHhCCCceEEEEeccchHhHHhhhHHhHHHHhhhhhhhccCCcchHHHHHHh
Confidence 66665444433334444333 3333588888888888777766 2233334432 3455556677
Q ss_pred HHHHHHHHHHHcCCC--HHH------HHHHHhhccc-cc-hhhh---hcccccccCCC--CCCcchhHHHHHHHHHHHHH
Q 018213 254 TFSEGLLHSEKVGLD--PNV------LVEVVSQGAI-SA-PMYS---LKGPSMIESLY--PTAFPLKHQQKDLRLALGLA 318 (359)
Q Consensus 254 ~~~Ea~~l~~~~Gi~--~~~------~~~~~~~~~~-~s-~~~~---~~~~~~~~~~~--~~~~~~~~~~kd~~~~~~~a 318 (359)
.+.|+..+++..--. +++ +.|++....+ .+ +..+ ..+..+...+. -.+..+. +.-..+.+.+++
T Consensus 254 Gl~Em~~F~~~f~p~~~~~t~~escGvaDlitTC~gGRNr~~aeafaktgk~~~~~E~ell~Gq~~Q-G~~Ta~~Vy~~L 332 (372)
T KOG2711|consen 254 GLLEMIKFATHFYPGSKPTTFFESCGVADLITTCYGGRNRKVAEAFAKTGKSLEELEKELLNGQKLQ-GPATAKEVYELL 332 (372)
T ss_pred hHHHHHHHHHHhCCCCCcceeeccccHHHHHHHHhcCccHHHHHHHHHcCCCHHHHHHHhhCCCccc-CcHHHHHHHHHH
Confidence 888888887764322 222 2233333211 11 1111 11111110000 0111111 112246788899
Q ss_pred HhcCC--CchHHHHHHHHHHHHHHCCCCCccHHHHHHHHHhC
Q 018213 319 ESVSQ--STPIAAAANELYKVAKSHGLSDEDFSAVIEALKAK 358 (359)
Q Consensus 319 ~~~g~--~~p~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~~~ 358 (359)
++.++ ..|+..++++++. ++....++++.+++.
T Consensus 333 ~~~~l~~kfPlftaVykI~~-------~~~~~~~lle~l~~~ 367 (372)
T KOG2711|consen 333 QKKGLVEKFPLFTAVYKICY-------ERLPPQALLECLRNH 367 (372)
T ss_pred HHcChhhhCcHHHHHHHHHh-------cCCCHHHHHHHHhcc
Confidence 99999 7899999988874 556788888888765
No 130
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=99.16 E-value=1.3e-10 Score=93.91 Aligned_cols=91 Identities=26% Similarity=0.275 Sum_probs=67.5
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCcc-chhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcc
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS-KCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG 147 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~-~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~ 147 (359)
+++++|+|||+|..|.+.|..|+..|++|++..|..+ ..+...+.|.+.. +..|+++++|+|++.+| ++....++
T Consensus 2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~-~~~eAv~~aDvV~~L~P-D~~q~~vy-- 77 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVM-SVAEAVKKADVVMLLLP-DEVQPEVY-- 77 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECC-EHHHHHHC-SEEEE-S--HHHHHHHH--
T ss_pred cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeec-cHHHHHhhCCEEEEeCC-hHHHHHHH--
Confidence 4568999999999999999999999999999888765 5556667788765 88999999999999998 44555565
Q ss_pred cccccccCCCCCEEEe
Q 018213 148 KHGAASGMGPGKGYVD 163 (359)
Q Consensus 148 ~~~~~~~l~~~~~vi~ 163 (359)
++++.+.|++|+.++-
T Consensus 78 ~~~I~p~l~~G~~L~f 93 (165)
T PF07991_consen 78 EEEIAPNLKPGATLVF 93 (165)
T ss_dssp HHHHHHHS-TT-EEEE
T ss_pred HHHHHhhCCCCCEEEe
Confidence 4778889999998763
No 131
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=99.14 E-value=1.5e-10 Score=95.61 Aligned_cols=114 Identities=21% Similarity=0.196 Sum_probs=86.1
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCC-CcEEEEcCCccchhHHHhC-CC----ccCCCHHHHhhcCCEEEEeeCChhH-H
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISL-GA----KYQPSPDEVAASCDVTFAMLADPES-A 141 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g-~~V~~~d~~~~~~~~~~~~-g~----~~~~~~~~~~~~aDivi~~~p~~~~-~ 141 (359)
.++++|+|+|+|.||..+++.|...| .+|.+++|++++.+.+.+. +. ....+.+++++++|+|++++|.+.. .
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~~ 96 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKPG 96 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCCCC
Confidence 55688999999999999999999986 7899999998776665443 22 1345677778999999999986654 2
Q ss_pred HHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213 142 MDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (359)
Q Consensus 142 ~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (359)
....+ ....++++.+++|++..++.. .+.+.+++.|+.+++
T Consensus 97 ~~~~~----~~~~~~~~~~v~D~~~~~~~~--~l~~~~~~~g~~~v~ 137 (155)
T cd01065 97 DELPL----PPSLLKPGGVVYDVVYNPLET--PLLKEARALGAKTID 137 (155)
T ss_pred CCCCC----CHHHcCCCCEEEEcCcCCCCC--HHHHHHHHCCCceeC
Confidence 22221 112468999999998875554 788888888887776
No 132
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=99.14 E-value=3.7e-10 Score=101.62 Aligned_cols=111 Identities=16% Similarity=0.174 Sum_probs=85.7
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHH--CCCcEE-EEcCCccchhHHHhC-C-CccCCCHHHHhhcCCEEEEeeCChhHHHH
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLK--AGCDVT-VWNRTKSKCDPLISL-G-AKYQPSPDEVAASCDVTFAMLADPESAMD 143 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~--~g~~V~-~~d~~~~~~~~~~~~-g-~~~~~~~~~~~~~aDivi~~~p~~~~~~~ 143 (359)
++.+||||||+|+||+.+++.|.. .++++. ++||++++.+.+.+. + ...++++++++.++|+|++|+|...+ .+
T Consensus 4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~h-~e 82 (271)
T PRK13302 4 RPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASVL-RA 82 (271)
T ss_pred CCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHHH-HH
Confidence 456899999999999999999986 377875 789988776665543 4 35677899999999999999985443 44
Q ss_pred HhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCee
Q 018213 144 VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASF 186 (359)
Q Consensus 144 ~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~ 186 (359)
+. . ..++.|..++..+.+...+.+++.+..+++|..+
T Consensus 83 ~~---~---~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~l 119 (271)
T PRK13302 83 IV---E---PVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQI 119 (271)
T ss_pred HH---H---HHHHcCCcEEEecchhHHhHHHHHHHHHHcCCEE
Confidence 43 2 3356777777777777777889999988888765
No 133
>PLN02494 adenosylhomocysteinase
Probab=99.12 E-value=1.8e-10 Score=109.05 Aligned_cols=103 Identities=13% Similarity=0.033 Sum_probs=84.5
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhccc
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK 148 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~ 148 (359)
+.+++|+|+|+|.||+.+|+.+..+|++|+++++++.+.......|.... +++++++.+|+|+.+.. +++++ +
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv-~leEal~~ADVVI~tTG----t~~vI--~ 324 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVL-TLEDVVSEADIFVTTTG----NKDII--M 324 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeec-cHHHHHhhCCEEEECCC----Cccch--H
Confidence 67899999999999999999999999999999998876555555566544 78899999999998653 33444 3
Q ss_pred ccccccCCCCCEEEeccC-CChHHHHHHHHH
Q 018213 149 HGAASGMGPGKGYVDVST-VDGDTSKLINGH 178 (359)
Q Consensus 149 ~~~~~~l~~~~~vi~~s~-~~~~~~~~l~~~ 178 (359)
.+.++.|++|++++|+++ +..++..+|.+.
T Consensus 325 ~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~ 355 (477)
T PLN02494 325 VDHMRKMKNNAIVCNIGHFDNEIDMLGLETY 355 (477)
T ss_pred HHHHhcCCCCCEEEEcCCCCCccCHHHHhhc
Confidence 556788999999999999 467888888776
No 134
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=99.09 E-value=4.9e-10 Score=105.30 Aligned_cols=106 Identities=16% Similarity=0.088 Sum_probs=86.9
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhccc
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK 148 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~ 148 (359)
+.+++|+|+|+|.+|+.+|+.++.+|++|+++++++.+.......|.... +++++++.+|+||.++. +.+++ +
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~-~leeal~~aDVVItaTG----~~~vI--~ 265 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAAKIGDIFITATG----NKDVI--R 265 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeC-CHHHHHhcCCEEEECCC----CHHHH--H
Confidence 67899999999999999999999999999999998876555555676544 67888999999998774 24455 3
Q ss_pred ccccccCCCCCEEEeccCCCh-HHHHHHHHHHHh
Q 018213 149 HGAASGMGPGKGYVDVSTVDG-DTSKLINGHIKA 181 (359)
Q Consensus 149 ~~~~~~l~~~~~vi~~s~~~~-~~~~~l~~~l~~ 181 (359)
.+.+..|++|++++|+++... ++.++|.+.+.+
T Consensus 266 ~~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~ 299 (406)
T TIGR00936 266 GEHFENMKDGAIVANIGHFDVEIDVKALEELAVE 299 (406)
T ss_pred HHHHhcCCCCcEEEEECCCCceeCHHHHHHHHhh
Confidence 446788999999999999886 888888886654
No 135
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.05 E-value=1.5e-08 Score=87.31 Aligned_cols=251 Identities=17% Similarity=0.206 Sum_probs=159.9
Q ss_pred CeEEEEcCChhhHHHHHHHHHCCC----cEEEEcCCccchhH-HHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhc
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKAGC----DVTVWNRTKSKCDP-LISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 146 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~g~----~V~~~d~~~~~~~~-~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~ 146 (359)
|++|+||.|+|..++++.+...|. ++..+..+...... +...|++.+.+..+.++.+|++++++ ++..+..++
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~~g~~~~~~n~~~~~~s~v~~~sv-Kp~~i~~vl- 78 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLMFEALGVKTVFTNLEVLQASDVVFLSV-KPQVIESVL- 78 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhhhhcCCceeeechHHHHhhccceeEee-cchhHHHHh-
Confidence 569999999999999999999884 56666663333333 55668887777788999999999999 788888888
Q ss_pred ccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec-CCCCCCCccccCCceEEEecC--CHHHHHHHHHHHHH
Q 018213 147 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPAEDGQLIFLAAG--DKSLYNTVAPLLDI 223 (359)
Q Consensus 147 ~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g--~~~~~~~v~~ll~~ 223 (359)
.++......+.+++.+.-|.... .+.+.+. ...+++- .|. .+.....+..++..+. ..+..+.++++++.
T Consensus 79 --s~~~~~~~~~~iivS~aaG~tl~--~l~~~l~-~~~rviRvmpN--tp~~v~eg~sv~~~g~~~~~~D~~l~~~ll~~ 151 (267)
T KOG3124|consen 79 --SEIKPKVSKGKIIVSVAAGKTLS--SLESKLS-PPTRVIRVMPN--TPSVVGEGASVYAIGCHATNEDLELVEELLSA 151 (267)
T ss_pred --hcCccccccceEEEEEeecccHH--HHHHhcC-CCCceEEecCC--ChhhhhcCcEEEeeCCCcchhhHHHHHHHHHh
Confidence 67766677888999887665543 3555553 2222332 121 1222233333333332 45666889999999
Q ss_pred hCCCeEEeCc--cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcc-ccchhhhhcc--cccccCCC
Q 018213 224 MGKSRFYLGD--VGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGA-ISAPMYSLKG--PSMIESLY 298 (359)
Q Consensus 224 lg~~~~~~g~--~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~-~~s~~~~~~~--~~~~~~~~ 298 (359)
.|+.. .+.+ ......+--....+.+.++.++.+. ..+.|++.+..+++..++- +...+...-. |.+++++.
T Consensus 152 vG~~~-evpE~~iDavTgLsGSgPAy~f~~ieaLadG---gVkmGlPr~lA~~laaqtllGAakMVl~s~qHP~~Lkd~V 227 (267)
T KOG3124|consen 152 VGLCE-EVPEKCIDAVTGLSGSGPAYVFVAIEALADG---GVKMGLPRQLAYRLAAQTLLGAAKMVLASGQHPAQLKDDV 227 (267)
T ss_pred cCcce-eCcHHhhhHHhhccCCcHHHHHHHHHHHhcc---ccccCCCHHHHHHHHHHHHHhHHHHHHhccCCcHHHhCCC
Confidence 99854 2333 2111111112233444444334333 3789999999999988763 3333333322 44555444
Q ss_pred -CCCcchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHCC
Q 018213 299 -PTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKVAKSHG 342 (359)
Q Consensus 299 -~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g 342 (359)
.|+.+.-+ .+...++-|++.-++.++.+--.++.+.+
T Consensus 228 ~SPgG~TI~-------glh~LE~ggfRs~linaVeaa~~r~~el~ 265 (267)
T KOG3124|consen 228 CSPGGTTIY-------GLHALEKGGFRSGLINAVEAATKRARELG 265 (267)
T ss_pred CCCCcchHH-------HHHHHHhCCchhHHHHHHHHHHHHHHHhc
Confidence 56543333 35578888999999999998888877653
No 136
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=98.98 E-value=3e-09 Score=97.04 Aligned_cols=112 Identities=22% Similarity=0.268 Sum_probs=84.8
Q ss_pred cCCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccC--CCHHHHhhcCCEEEEeeCChhHHHHHh
Q 018213 68 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ--PSPDEVAASCDVTFAMLADPESAMDVA 145 (359)
Q Consensus 68 ~~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~--~~~~~~~~~aDivi~~~p~~~~~~~~~ 145 (359)
++.+++++|||+|.+|+.++..|..+|.+|++++|++++.+.....|.... .++.+.+.++|+||.++|.. ++
T Consensus 149 ~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~~-----~i 223 (296)
T PRK08306 149 TIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPAL-----VL 223 (296)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCChh-----hh
Confidence 367899999999999999999999999999999999876665556666543 35667888999999999743 23
Q ss_pred cccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecC
Q 018213 146 CGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA 189 (359)
Q Consensus 146 ~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~ 189 (359)
+++.++.|+++.++||++..+.... + +..+..|+..+..
T Consensus 224 --~~~~l~~~~~g~vIIDla~~pggtd--~-~~a~~~Gv~~~~~ 262 (296)
T PRK08306 224 --TKEVLSKMPPEALIIDLASKPGGTD--F-EYAEKRGIKALLA 262 (296)
T ss_pred --hHHHHHcCCCCcEEEEEccCCCCcC--e-eehhhCCeEEEEE
Confidence 2455677899999999987654322 2 3445667666643
No 137
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=98.97 E-value=4.3e-09 Score=90.47 Aligned_cols=110 Identities=15% Similarity=0.198 Sum_probs=81.8
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC-CCccCCCHHHHhh-cCCEEEEeeCChhHHHHHhc
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-GAKYQPSPDEVAA-SCDVTFAMLADPESAMDVAC 146 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-g~~~~~~~~~~~~-~aDivi~~~p~~~~~~~~~~ 146 (359)
+++|+|+|+|+|+||+.+|+.|.++|++|+++|+++++.+.+.+. +....++ ++++. ++|+++.|.... ++
T Consensus 26 l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~~-~~l~~~~~Dv~vp~A~~~-----~I- 98 (200)
T cd01075 26 LEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVAP-EEIYSVDADVFAPCALGG-----VI- 98 (200)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEcc-hhhccccCCEEEeccccc-----cc-
Confidence 778999999999999999999999999999999998877766554 6655533 55554 799999776433 33
Q ss_pred ccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213 147 GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (359)
Q Consensus 147 ~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (359)
+++.++.++ ..+|+.-+++...+ ..-.+.|+++|+.|++
T Consensus 99 -~~~~~~~l~-~~~v~~~AN~~~~~-~~~~~~L~~~Gi~~~P 137 (200)
T cd01075 99 -NDDTIPQLK-AKAIAGAANNQLAD-PRHGQMLHERGILYAP 137 (200)
T ss_pred -CHHHHHHcC-CCEEEECCcCccCC-HhHHHHHHHCCCEEeC
Confidence 233344554 45777776665543 4677888899999986
No 138
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=98.94 E-value=1.1e-07 Score=84.11 Aligned_cols=244 Identities=16% Similarity=0.147 Sum_probs=164.2
Q ss_pred CeEEEEcCChhhHHHHHHHHHC--CCcEEEEcCCccchhHHHh-------------------CCCccCCCHHHHhhcCCE
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKA--GCDVTVWNRTKSKCDPLIS-------------------LGAKYQPSPDEVAASCDV 130 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~--g~~V~~~d~~~~~~~~~~~-------------------~g~~~~~~~~~~~~~aDi 130 (359)
+||+-||+|.+|......++-. ..+|+++|.+..++..... .+..+.++.+..++++|+
T Consensus 2 ~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdiekai~eadl 81 (481)
T KOG2666|consen 2 VKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKEADL 81 (481)
T ss_pred ceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHHhhhcce
Confidence 6799999999999877766543 2578888887766543321 123456688999999999
Q ss_pred EEEeeCChhHHHHHhcc-----------cccccccCCCCCEEEeccCCChHHHHHHHHHHHh--cCCe--eecCCCCCCC
Q 018213 131 TFAMLADPESAMDVACG-----------KHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKA--TGAS--FLEAPVSGSK 195 (359)
Q Consensus 131 vi~~~p~~~~~~~~~~~-----------~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~--~~~~--~~~~~~~~~~ 195 (359)
|++.+..|..+...=.| .+-+.+.-...++++.-|+.+....+.+...+.. .|+. .+..|-|-.+
T Consensus 82 vfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivvekstvpv~aaesi~~il~~n~~~i~fqilsnpeflae 161 (481)
T KOG2666|consen 82 VFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVVEKSTVPVKAAESIEKILNHNSKGIKFQILSNPEFLAE 161 (481)
T ss_pred EEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEEeeccccchHHHHHHHHHhcCCCCceeEeccChHHhcc
Confidence 99999655444322100 0222233456789999999999988889888853 2544 3445544222
Q ss_pred ---ccccCCceEEEecC--CHHHHHHH---HHHHHHhCC-CeEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 018213 196 ---KPAEDGQLIFLAAG--DKSLYNTV---APLLDIMGK-SRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVG 266 (359)
Q Consensus 196 ---~~~~~~~~~~~~~g--~~~~~~~v---~~ll~~lg~-~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~G 266 (359)
.....++..+++|| .++..+.+ ..+.+.+-. .-+.+.+..+++..|++.|.+++--+..++.+.++|++.|
T Consensus 162 gtaikdl~npdrvligg~etpeg~~av~~l~~vyehwvp~~~iittntwsselsklaanaflaqrissins~salceatg 241 (481)
T KOG2666|consen 162 GTAIKDLFNPDRVLIGGRETPEGFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAANAFLAQRISSINSMSALCEATG 241 (481)
T ss_pred cchhhhhcCCceEEECCCCChhHHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcC
Confidence 11223444566776 34444444 445555432 2345666778999999999999999999999999999999
Q ss_pred CCHHHHHHHHhhccccchhhhhcccccccCCCCCCcchhHHHHHHHHHHHHHHhcCCC
Q 018213 267 LDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQS 324 (359)
Q Consensus 267 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~ 324 (359)
.+..++..++....... +..+ +..-||....+.||.-..+-+++-+|+|
T Consensus 242 adv~eva~avg~d~rig-------~kfl--~asvgfggscfqkdilnlvyice~lnlp 290 (481)
T KOG2666|consen 242 ADVSEVAYAVGTDSRIG-------SKFL--NASVGFGGSCFQKDILNLVYICECLNLP 290 (481)
T ss_pred CCHHHHHHHhccccccc-------HHHh--hcccCcCchhHHHHHHHHHHHHhcCCCh
Confidence 99999988877532211 1111 1134566678899988888899988887
No 139
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=98.89 E-value=1.2e-08 Score=85.99 Aligned_cols=200 Identities=16% Similarity=0.140 Sum_probs=135.0
Q ss_pred CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHH-----------HhCC--------------CccCCCHHHHhh
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL-----------ISLG--------------AKYQPSPDEVAA 126 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~-----------~~~g--------------~~~~~~~~~~~~ 126 (359)
-||+|+|.|.+|+.+|..++..|++|..||..++.+... .+.| +..+.+++|+.+
T Consensus 4 ~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~vk 83 (313)
T KOG2305|consen 4 GKIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNELVK 83 (313)
T ss_pred cceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHHHHh
Confidence 569999999999999999999999999999987654321 1112 244679999999
Q ss_pred cCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEE
Q 018213 127 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFL 206 (359)
Q Consensus 127 ~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (359)
++=.|-.|+|..-+.+.-++ +.+-.-+.+. .|+..|+ +......+.+.|.++.-..+.+|+..+-- -+++-+
T Consensus 84 ~Ai~iQEcvpE~L~lkk~ly--~qlD~i~d~~-tIlaSST-St~mpS~~s~gL~~k~q~lvaHPvNPPyf----iPLvEl 155 (313)
T KOG2305|consen 84 GAIHIQECVPEDLNLKKQLY--KQLDEIADPT-TILASST-STFMPSKFSAGLINKEQCLVAHPVNPPYF----IPLVEL 155 (313)
T ss_pred hhhhHHhhchHhhHHHHHHH--HHHHHhcCCc-eEEeccc-cccChHHHhhhhhhhhheeEecCCCCCcc----cchhee
Confidence 99999999998877777663 4443334444 4443333 33333345555655555667777643211 122222
Q ss_pred ec---CCHHHHHHHHHHHHHhCCCeEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccc
Q 018213 207 AA---GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISA 283 (359)
Q Consensus 207 ~~---g~~~~~~~v~~ll~~lg~~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s 283 (359)
+. ..++.+++.+++.+.+|..++....+-.+.++ |-+- .+.++|...++...++...+++.+++.+-+..
T Consensus 156 VPaPwTsp~tVdrt~~lM~sigq~pV~l~rei~Gf~l----nriq---~Ailne~wrLvasGil~v~dvD~VmS~GLG~R 228 (313)
T KOG2305|consen 156 VPAPWTSPDTVDRTRALMRSIGQEPVTLKREILGFAL----NRIQ---YAILNETWRLVASGILNVNDVDAVMSAGLGPR 228 (313)
T ss_pred ccCCCCChhHHHHHHHHHHHhCCCCccccccccccee----cccc---HHHHHHHHHHHHccCcchhhHHHHHhcCCCcc
Confidence 32 26889999999999999888766552213322 3222 34567999999999999999999998875554
Q ss_pred hhh
Q 018213 284 PMY 286 (359)
Q Consensus 284 ~~~ 286 (359)
..+
T Consensus 229 YAf 231 (313)
T KOG2305|consen 229 YAF 231 (313)
T ss_pred hhc
Confidence 443
No 140
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=98.88 E-value=5.3e-09 Score=85.13 Aligned_cols=94 Identities=19% Similarity=0.172 Sum_probs=67.6
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhccc
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK 148 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~ 148 (359)
+.++++.|+|+|.+|+.+|+.|+..|.+|++++++|-+.-+..-.|.+.. +++++++.+|+++.++... +++ .
T Consensus 21 l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~-~~~~a~~~adi~vtaTG~~----~vi--~ 93 (162)
T PF00670_consen 21 LAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVM-TLEEALRDADIFVTATGNK----DVI--T 93 (162)
T ss_dssp -TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE--HHHHTTT-SEEEE-SSSS----SSB---
T ss_pred eCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEec-CHHHHHhhCCEEEECCCCc----ccc--C
Confidence 78899999999999999999999999999999999876655555687765 7999999999999887432 223 2
Q ss_pred ccccccCCCCCEEEeccCCCh
Q 018213 149 HGAASGMGPGKGYVDVSTVDG 169 (359)
Q Consensus 149 ~~~~~~l~~~~~vi~~s~~~~ 169 (359)
.+.+..||+|+++.|.+....
T Consensus 94 ~e~~~~mkdgail~n~Gh~d~ 114 (162)
T PF00670_consen 94 GEHFRQMKDGAILANAGHFDV 114 (162)
T ss_dssp HHHHHHS-TTEEEEESSSSTT
T ss_pred HHHHHHhcCCeEEeccCcCce
Confidence 344578999999999976544
No 141
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=98.88 E-value=7.6e-09 Score=97.91 Aligned_cols=101 Identities=18% Similarity=0.109 Sum_probs=80.3
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhccc
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK 148 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~ 148 (359)
+.+++|+|+|+|.||+.+|+.++.+|.+|+++++++.+.......|... .+++++++.+|+||.++.. .+++ +
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v-~~l~eal~~aDVVI~aTG~----~~vI--~ 282 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRV-MTMEEAAELGDIFVTATGN----KDVI--T 282 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEe-cCHHHHHhCCCEEEECCCC----HHHH--H
Confidence 6789999999999999999999999999999999987765555556654 4788999999999988742 3345 3
Q ss_pred ccccccCCCCCEEEeccCCCh-HHHHHHH
Q 018213 149 HGAASGMGPGKGYVDVSTVDG-DTSKLIN 176 (359)
Q Consensus 149 ~~~~~~l~~~~~vi~~s~~~~-~~~~~l~ 176 (359)
.+.+..|++|++++|.++... .+...+.
T Consensus 283 ~~~~~~mK~GailiNvG~~d~Eid~~~L~ 311 (425)
T PRK05476 283 AEHMEAMKDGAILANIGHFDNEIDVAALE 311 (425)
T ss_pred HHHHhcCCCCCEEEEcCCCCCccChHHHh
Confidence 456788999999999988764 3444443
No 142
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.88 E-value=1.4e-08 Score=91.36 Aligned_cols=108 Identities=20% Similarity=0.293 Sum_probs=78.5
Q ss_pred CeEEEEcCChhhHHHHHHHHHC--CCc-EEEEcCCccchhHHHh-CCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcc
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKA--GCD-VTVWNRTKSKCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG 147 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~--g~~-V~~~d~~~~~~~~~~~-~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~ 147 (359)
|||||||+|.||+.+++.+... +++ +.++|+++++.+.+.+ .+...+.++++++.++|+|++|+| +.......
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~-~~~~~~~~-- 78 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECAS-VNAVEEVV-- 78 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCC-hHHHHHHH--
Confidence 6899999999999999999875 455 4578999877666554 356667899999899999999997 55555554
Q ss_pred cccccccCCCCCEEEeccCC---ChHHHHHHHHHHHhcCCee
Q 018213 148 KHGAASGMGPGKGYVDVSTV---DGDTSKLINGHIKATGASF 186 (359)
Q Consensus 148 ~~~~~~~l~~~~~vi~~s~~---~~~~~~~l~~~l~~~~~~~ 186 (359)
.. .++.|..++..+.+ .....+.+.+..++.|..+
T Consensus 79 -~~---al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l 116 (265)
T PRK13304 79 -PK---SLENGKDVIIMSVGALADKELFLKLYKLAKENNCKI 116 (265)
T ss_pred -HH---HHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCEE
Confidence 33 34456666666554 3445567777777777543
No 143
>KOG0067 consensus Transcription factor CtBP [Transcription]
Probab=98.86 E-value=1e-09 Score=98.62 Aligned_cols=156 Identities=12% Similarity=0.029 Sum_probs=119.3
Q ss_pred CCCcccccccCCCCCCcCCCCCCCCCCCCCCCccccccccccccCCcccccCCCCeEEEEcCChhhHHHHHHHHHCCCcE
Q 018213 18 TPAMSVCSSFCPQLPSYFRQKPINSLPTKPLFPLSFKVFSSQATGVSAEADELPGRIGFLGMGIMGTPMAQNLLKAGCDV 97 (359)
Q Consensus 18 ~~~~~~~l~~~r~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igiiG~G~iG~~ia~~l~~~g~~V 97 (359)
.-++-+++++.|+-.-..+..++|.|..... +.+.........++.++|++|+|+.|++++.+...+|+.|
T Consensus 134 ~stl~hIl~l~rrntw~cq~l~eg~~~q~~~---------q~~e~a~g~~~~~G~~~g~~g~gr~g~av~~~A~afg~~~ 204 (435)
T KOG0067|consen 134 DSTLCHILNLYRRNTWLCQALREGTCTQGLE---------QVREAACGLARIRGPTLGLIGFGRTGQAVALRAKAFGFVV 204 (435)
T ss_pred HHHHHHHHhhhcccchhhhhhcccceeechh---------hhhhhhhccccccccceeeeccccccceehhhhhccccee
Confidence 3345556666676666667777777752211 1122223333378889999999999999999999999999
Q ss_pred EEEcCCccchhHH-HhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHH
Q 018213 98 TVWNRTKSKCDPL-ISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLIN 176 (359)
Q Consensus 98 ~~~d~~~~~~~~~-~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~ 176 (359)
+.||+.... -+ ...|...+.++.|++-++|-+.+++..+++..+++ +.--...|+.|..++|++++..+++.+|.
T Consensus 205 ifydp~~~~--g~~~~lg~~rVytlqd~~~~sd~~S~hc~~~~~~h~li--n~~tikqm~qGaflvnta~gglvdekaLa 280 (435)
T KOG0067|consen 205 IFYDPYLID--GIDKSLGLQRVYTLQDLLYQSDCVSLHCNLNEHNHELI--NDFTIKQMRQGAFLVNTARGGLVDEKALA 280 (435)
T ss_pred eeecchhhh--hhhhhcccceecccchhhhhccceeeecccCccccccc--ccccceeecccceEeeecccccCChHHHH
Confidence 999975422 22 12366777789999999999999999999999988 56666789999999999999999999999
Q ss_pred HHHHhcCCee
Q 018213 177 GHIKATGASF 186 (359)
Q Consensus 177 ~~l~~~~~~~ 186 (359)
++|+++.++.
T Consensus 281 qaLk~G~i~~ 290 (435)
T KOG0067|consen 281 QALKSGRIRG 290 (435)
T ss_pred hhhccCceec
Confidence 9998876653
No 144
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=98.85 E-value=4.1e-09 Score=98.63 Aligned_cols=89 Identities=17% Similarity=0.186 Sum_probs=71.6
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCC------ccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHH
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRT------KSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAM 142 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~------~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~ 142 (359)
+++++|+|||+|.+|.+.|..|...|++|++--|. .+..+.+.+.|... .+++|+++.||+|++.+|++ + .
T Consensus 34 LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v-~~~~Ea~~~ADvVviLlPDt-~-q 110 (487)
T PRK05225 34 LKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKV-GTYEELIPQADLVINLTPDK-Q-H 110 (487)
T ss_pred hCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCcc-CCHHHHHHhCCEEEEcCChH-H-H
Confidence 78899999999999999999999999999855443 23334444567755 68999999999999999977 4 4
Q ss_pred HHhcccccccccCCCCCEEE
Q 018213 143 DVACGKHGAASGMGPGKGYV 162 (359)
Q Consensus 143 ~~~~~~~~~~~~l~~~~~vi 162 (359)
..+ .+++++.|++|+.+.
T Consensus 111 ~~v--~~~i~p~LK~Ga~L~ 128 (487)
T PRK05225 111 SDV--VRAVQPLMKQGAALG 128 (487)
T ss_pred HHH--HHHHHhhCCCCCEEE
Confidence 544 388999999998875
No 145
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.80 E-value=2.2e-08 Score=90.07 Aligned_cols=79 Identities=27% Similarity=0.372 Sum_probs=66.2
Q ss_pred ccCCCCeEEEEcCC-hhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHh
Q 018213 67 ADELPGRIGFLGMG-IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA 145 (359)
Q Consensus 67 ~~~~~~~igiiG~G-~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~ 145 (359)
.++.+++|+|||.| .||+.+|..|.+.|++|++|++... ++.+++++||+||.+++.+..+...
T Consensus 155 i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~--------------~l~e~~~~ADIVIsavg~~~~v~~~- 219 (301)
T PRK14194 155 GDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST--------------DAKALCRQADIVVAAVGRPRLIDAD- 219 (301)
T ss_pred CCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC--------------CHHHHHhcCCEEEEecCChhcccHh-
Confidence 35889999999996 9999999999999999999987542 6788899999999999877544333
Q ss_pred cccccccccCCCCCEEEeccCCC
Q 018213 146 CGKHGAASGMGPGKGYVDVSTVD 168 (359)
Q Consensus 146 ~~~~~~~~~l~~~~~vi~~s~~~ 168 (359)
.+++|+++||++...
T Consensus 220 --------~ik~GaiVIDvgin~ 234 (301)
T PRK14194 220 --------WLKPGAVVIDVGINR 234 (301)
T ss_pred --------hccCCcEEEEecccc
Confidence 278999999997543
No 146
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=98.75 E-value=8.3e-08 Score=90.69 Aligned_cols=93 Identities=17% Similarity=0.105 Sum_probs=77.0
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhccc
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK 148 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~ 148 (359)
+.+++|+|+|+|.||..+++.++.+|.+|+++++++.+.......|+... +.++.++.+|+||.++... .++ +
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~-~~~e~v~~aDVVI~atG~~----~~i--~ 272 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVM-TMEEAVKEGDIFVTTTGNK----DII--T 272 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEc-cHHHHHcCCCEEEECCCCH----HHH--H
Confidence 67899999999999999999999999999999999888777777787544 5678888999999987532 344 2
Q ss_pred ccccccCCCCCEEEeccCCC
Q 018213 149 HGAASGMGPGKGYVDVSTVD 168 (359)
Q Consensus 149 ~~~~~~l~~~~~vi~~s~~~ 168 (359)
.+.+..|++|.+++|+++..
T Consensus 273 ~~~l~~mk~GgilvnvG~~~ 292 (413)
T cd00401 273 GEHFEQMKDGAIVCNIGHFD 292 (413)
T ss_pred HHHHhcCCCCcEEEEeCCCC
Confidence 34467899999999998764
No 147
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=98.67 E-value=8.6e-08 Score=84.58 Aligned_cols=90 Identities=24% Similarity=0.291 Sum_probs=73.4
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccc-hhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcc
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK-CDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG 147 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~-~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~ 147 (359)
+++++|+|||+|.-|.+-|..|+..|.+|++--|.... .+...+.|..+. +.+|+++.+|+|.+.+|+ ..-..++
T Consensus 16 LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~-~v~ea~k~ADvim~L~PD-e~q~~vy-- 91 (338)
T COG0059 16 LKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVY-TVEEAAKRADVVMILLPD-EQQKEVY-- 91 (338)
T ss_pred hcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEee-cHHHHhhcCCEEEEeCch-hhHHHHH--
Confidence 78899999999999999999999999999887765444 455556677755 899999999999999984 4555666
Q ss_pred cccccccCCCCCEEE
Q 018213 148 KHGAASGMGPGKGYV 162 (359)
Q Consensus 148 ~~~~~~~l~~~~~vi 162 (359)
.+++.+.|++|+.+.
T Consensus 92 ~~~I~p~Lk~G~aL~ 106 (338)
T COG0059 92 EKEIAPNLKEGAALG 106 (338)
T ss_pred HHHhhhhhcCCceEE
Confidence 358888999988553
No 148
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=98.67 E-value=2e-07 Score=73.34 Aligned_cols=108 Identities=17% Similarity=0.256 Sum_probs=79.5
Q ss_pred CeEEEEcCChhhHHHHHHHHHC--CCcEE-EEcCCccchhHHH-hCCCccCCCHHHHhh--cCCEEEEeeCChhHHHHHh
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKA--GCDVT-VWNRTKSKCDPLI-SLGAKYQPSPDEVAA--SCDVTFAMLADPESAMDVA 145 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~--g~~V~-~~d~~~~~~~~~~-~~g~~~~~~~~~~~~--~aDivi~~~p~~~~~~~~~ 145 (359)
++|||||+|.+|+.....+... ++++. ++|+++++.+.+. ..++..+++.++++. +.|+|++++|...+...+.
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~~ 80 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAEIAK 80 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHHHHH
Confidence 3799999999999999988876 35654 7899988777654 458888999999998 6899999998655554443
Q ss_pred cccccccccCCCCCEEEec--cCCChHHHHHHHHHHHhcCCee
Q 018213 146 CGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASF 186 (359)
Q Consensus 146 ~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~ 186 (359)
..++.|..++-- -.....+.+++.+..++.+..+
T Consensus 81 -------~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~~ 116 (120)
T PF01408_consen 81 -------KALEAGKHVLVEKPLALTLEEAEELVEAAKEKGVKV 116 (120)
T ss_dssp -------HHHHTTSEEEEESSSSSSHHHHHHHHHHHHHHTSCE
T ss_pred -------HHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHhCCEE
Confidence 234455544433 2336777888888888777543
No 149
>PRK06141 ornithine cyclodeaminase; Validated
Probab=98.66 E-value=5.6e-08 Score=89.63 Aligned_cols=111 Identities=14% Similarity=0.221 Sum_probs=77.5
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHH-CC-CcEEEEcCCccchhHHHhC----C--CccCCCHHHHhhcCCEEEEeeCChhH
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLK-AG-CDVTVWNRTKSKCDPLISL----G--AKYQPSPDEVAASCDVTFAMLADPES 140 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~-~g-~~V~~~d~~~~~~~~~~~~----g--~~~~~~~~~~~~~aDivi~~~p~~~~ 140 (359)
...++|+|||+|.+|..+++.+.. ++ .+|.+|+|++++.+.+.+. + +..+.+.+++++++|||+.++|.+
T Consensus 123 ~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~-- 200 (314)
T PRK06141 123 KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST-- 200 (314)
T ss_pred CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC--
Confidence 345799999999999999986654 44 6899999999887776653 3 455678899999999998888643
Q ss_pred HHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213 141 AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (359)
Q Consensus 141 ~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (359)
..++ . .+.+++|++ ||.....+....++...+..++..|++
T Consensus 201 -~pvl---~--~~~l~~g~~-i~~ig~~~~~~~El~~~~~~~a~~~vD 241 (314)
T PRK06141 201 -EPLV---R--GEWLKPGTH-LDLVGNFTPDMRECDDEAIRRASVYVD 241 (314)
T ss_pred -CCEe---c--HHHcCCCCE-EEeeCCCCcccccCCHHHHhcCcEEEc
Confidence 3444 1 145788884 555444444444555555444444554
No 150
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.64 E-value=2.6e-08 Score=80.15 Aligned_cols=93 Identities=16% Similarity=0.164 Sum_probs=67.4
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCCc-EEEEcCCccchhHHHhCC------CccCCCHHHHhhcCCEEEEeeCChhHH
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGCD-VTVWNRTKSKCDPLISLG------AKYQPSPDEVAASCDVTFAMLADPESA 141 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~-V~~~d~~~~~~~~~~~~g------~~~~~~~~~~~~~aDivi~~~p~~~~~ 141 (359)
++++++.|||+|.+|++++..|...|.+ |++++|+.++.+.+.+.- ....+++.+.+.++|+||.++|.+..
T Consensus 10 l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~~- 88 (135)
T PF01488_consen 10 LKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGMP- 88 (135)
T ss_dssp GTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTST-
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCCc-
Confidence 7789999999999999999999999986 999999998887776531 12345666778899999999986643
Q ss_pred HHHhcccccccccCCCC-CEEEeccC
Q 018213 142 MDVACGKHGAASGMGPG-KGYVDVST 166 (359)
Q Consensus 142 ~~~~~~~~~~~~~l~~~-~~vi~~s~ 166 (359)
.+ .++.+....+. .+++|.+.
T Consensus 89 --~i--~~~~~~~~~~~~~~v~Dla~ 110 (135)
T PF01488_consen 89 --II--TEEMLKKASKKLRLVIDLAV 110 (135)
T ss_dssp --SS--THHHHTTTCHHCSEEEES-S
T ss_pred --cc--CHHHHHHHHhhhhceecccc
Confidence 22 12222222222 48999964
No 151
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.63 E-value=1.5e-07 Score=85.04 Aligned_cols=77 Identities=30% Similarity=0.372 Sum_probs=64.1
Q ss_pred cCCCCeEEEEc-CChhhHHHHHHHHHCCCcEEEEc-CCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHh
Q 018213 68 DELPGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWN-RTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA 145 (359)
Q Consensus 68 ~~~~~~igiiG-~G~iG~~ia~~l~~~g~~V~~~d-~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~ 145 (359)
++++++|+||| .|.||..+|..|.+.|++|++|+ |++ ++++++++||+|+.+++.+..++..
T Consensus 155 ~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~---------------~l~e~~~~ADIVIsavg~~~~v~~~- 218 (296)
T PRK14188 155 DLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR---------------DLPAVCRRADILVAAVGRPEMVKGD- 218 (296)
T ss_pred CCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC---------------CHHHHHhcCCEEEEecCChhhcchh-
Confidence 48899999999 89999999999999999999995 543 4678889999999999876543322
Q ss_pred cccccccccCCCCCEEEeccCCC
Q 018213 146 CGKHGAASGMGPGKGYVDVSTVD 168 (359)
Q Consensus 146 ~~~~~~~~~l~~~~~vi~~s~~~ 168 (359)
.+++|+++||++...
T Consensus 219 --------~lk~GavVIDvGin~ 233 (296)
T PRK14188 219 --------WIKPGATVIDVGINR 233 (296)
T ss_pred --------eecCCCEEEEcCCcc
Confidence 278999999997543
No 152
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=98.63 E-value=8e-07 Score=75.28 Aligned_cols=192 Identities=16% Similarity=0.125 Sum_probs=122.6
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCCcEEE-EcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcc
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTV-WNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG 147 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~-~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~ 147 (359)
...+.+++||+|..|++...+....++.+.. ..|++++.+.+.+.-+-...+.+...+-.+++++.+|+. ....+.
T Consensus 8 ~~~v~~~~vgtgrl~ra~~~ra~h~~~~cs~i~srS~~~a~~LaE~~~a~p~d~~~~ael~~~vfv~vpd~-~~s~va-- 84 (289)
T COG5495 8 PARVVVGIVGTGRLGRAALLRADHVVVACSAISSRSRDRAQNLAETYVAPPLDVAKSAELLLLVFVDVPDA-LYSGVA-- 84 (289)
T ss_pred ceeeEEEEeecchHHHHHHHHhcchheeehhhhhcCHHHHhhchhccCCCccchhhChhhhceEEecchHH-HHHHHH--
Confidence 4558899999999999977777666666654 356666666555432222223333334457888888754 344443
Q ss_pred cccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec-CCCC---CCCccc--cCCceEEEecCCHHHHHHHHHHH
Q 018213 148 KHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVS---GSKKPA--EDGQLIFLAAGDKSLYNTVAPLL 221 (359)
Q Consensus 148 ~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~---~~~~~~--~~~~~~~~~~g~~~~~~~v~~ll 221 (359)
. ...-.+|+++++||..... .+.+.+...|..-.. +|.| |.+... -.++.+.+..+|+.-...++.+.
T Consensus 85 -a--~~~~rpg~iv~HcSga~~~---~il~~~gr~g~~~asiHP~f~Fsgl~edl~rl~d~~~~i~eaD~~g~ai~q~la 158 (289)
T COG5495 85 -A--TSLNRPGTIVAHCSGANGS---GILAPLGRQGCIPASIHPAFSFSGLDEDLSRLKDTIFGITEADDVGYAIVQSLA 158 (289)
T ss_pred -H--hcccCCCeEEEEccCCCch---hhhhhhhhcCCcceeecccccccCCHHHHHhCcccEEEeecccccccHHHHHHH
Confidence 1 1234689999999765543 345555554443222 4433 333222 23455555567777778899999
Q ss_pred HHhCCCeEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Q 018213 222 DIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPN 270 (359)
Q Consensus 222 ~~lg~~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~ 270 (359)
..+|..++.+.+.. -.......+...+..+..+.++..+-+..|+|.-
T Consensus 159 ~emgg~~f~V~~~~-r~lYHaaa~~asnf~v~~l~~a~~i~~aag~Dq~ 206 (289)
T COG5495 159 LEMGGEPFCVREEA-RILYHAAAVHASNFIVTVLADALEIYRAAGDDQP 206 (289)
T ss_pred HHhCCCceeechhH-HHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCCc
Confidence 99999887665533 5556666777777778888899999999998743
No 153
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=98.61 E-value=8.1e-08 Score=78.85 Aligned_cols=100 Identities=19% Similarity=0.313 Sum_probs=76.1
Q ss_pred EEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccC--------------CCHHHHhhcCCEEEEeeCChh
Q 018213 74 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ--------------PSPDEVAASCDVTFAMLADPE 139 (359)
Q Consensus 74 igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~--------------~~~~~~~~~aDivi~~~p~~~ 139 (359)
|+|+|.|.||..+|..|++.|++|.++.|++ ..+.+.+.|+... .+..+.....|+|++|+ +..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~v-Ka~ 78 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAV-KAY 78 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-S-SGG
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEe-ccc
Confidence 7899999999999999999999999999987 6666666554321 11223457899999999 788
Q ss_pred HHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHH
Q 018213 140 SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHI 179 (359)
Q Consensus 140 ~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l 179 (359)
+++.++ +.+.+.+.+++.++..-+|... .+.+.+.+
T Consensus 79 ~~~~~l---~~l~~~~~~~t~iv~~qNG~g~-~~~l~~~~ 114 (151)
T PF02558_consen 79 QLEQAL---QSLKPYLDPNTTIVSLQNGMGN-EEVLAEYF 114 (151)
T ss_dssp GHHHHH---HHHCTGEETTEEEEEESSSSSH-HHHHHCHS
T ss_pred chHHHH---HHHhhccCCCcEEEEEeCCCCc-HHHHHHHc
Confidence 999998 7788888888888877776443 34555555
No 154
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=98.55 E-value=3.4e-07 Score=85.36 Aligned_cols=109 Identities=21% Similarity=0.311 Sum_probs=81.8
Q ss_pred CCeEEEEcCChhhHHHHHHHHHCC-CcEEEEcCCccchhHHHhCC---Cc-------cCCCHHHHhhcCCEEEEeeCChh
Q 018213 71 PGRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISLG---AK-------YQPSPDEVAASCDVTFAMLADPE 139 (359)
Q Consensus 71 ~~~igiiG~G~iG~~ia~~l~~~g-~~V~~~d~~~~~~~~~~~~g---~~-------~~~~~~~~~~~aDivi~~~p~~~ 139 (359)
+|+|.|||+|.+|+.+|..|++.| .+|++.||+.++.+++.+.. ++ -.+.+.+++++.|+||.+.| +.
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p-~~ 79 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAP-PF 79 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCC-ch
Confidence 378999999999999999999999 99999999988887775542 21 13356688999999999998 44
Q ss_pred HHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeee
Q 018213 140 SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL 187 (359)
Q Consensus 140 ~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~ 187 (359)
....++ + ..++.|..++|+|-..+.. .++.+..++.|+.++
T Consensus 80 ~~~~i~---k---a~i~~gv~yvDts~~~~~~-~~~~~~a~~Agit~v 120 (389)
T COG1748 80 VDLTIL---K---ACIKTGVDYVDTSYYEEPP-WKLDEEAKKAGITAV 120 (389)
T ss_pred hhHHHH---H---HHHHhCCCEEEcccCCchh-hhhhHHHHHcCeEEE
Confidence 444554 2 3466788888887766654 566666666665544
No 155
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=98.53 E-value=1.4e-07 Score=88.83 Aligned_cols=96 Identities=22% Similarity=0.319 Sum_probs=71.4
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC-CCcc---C---CCHHHHhhcCCEEEEeeCCh-hH
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-GAKY---Q---PSPDEVAASCDVTFAMLADP-ES 140 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-g~~~---~---~~~~~~~~~aDivi~~~p~~-~~ 140 (359)
..+.+|.|||+|.+|...++.+..+|.+|+++|+++++.+.+... +... . .++.+.++++|+||.+++.+ ..
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~ 244 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGAK 244 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCCC
Confidence 456789999999999999999999999999999998776655433 2211 1 23566778999999998432 12
Q ss_pred HHHHhcccccccccCCCCCEEEeccC
Q 018213 141 AMDVACGKHGAASGMGPGKGYVDVST 166 (359)
Q Consensus 141 ~~~~~~~~~~~~~~l~~~~~vi~~s~ 166 (359)
...++ +++.+..|+++.+|||++.
T Consensus 245 ~p~li--t~~~l~~mk~g~vIvDva~ 268 (370)
T TIGR00518 245 APKLV--SNSLVAQMKPGAVIVDVAI 268 (370)
T ss_pred CCcCc--CHHHHhcCCCCCEEEEEec
Confidence 23344 4566677999999999974
No 156
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=98.51 E-value=6.7e-07 Score=75.71 Aligned_cols=94 Identities=19% Similarity=0.302 Sum_probs=70.7
Q ss_pred CeEEEEcCChhhHHHHHHHHHC--CCc-EEEEcCCccchhHHHhC-CCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcc
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKA--GCD-VTVWNRTKSKCDPLISL-GAKYQPSPDEVAASCDVTFAMLADPESAMDVACG 147 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~--g~~-V~~~d~~~~~~~~~~~~-g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~ 147 (359)
++|||||+|.||..+.+.+..- +++ |.+|||+.++...+.+. +...+.+++|++++.|+++.|. ..+.+++..
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaA-S~~Av~e~~-- 77 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAA-SPEAVREYV-- 77 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeC-CHHHHHHHh--
Confidence 4799999999999999998753 344 67899999887766543 4555688999999999999999 477777776
Q ss_pred cccccccCCCCCEEEeccCCChHHH
Q 018213 148 KHGAASGMGPGKGYVDVSTVDGDTS 172 (359)
Q Consensus 148 ~~~~~~~l~~~~~vi~~s~~~~~~~ 172 (359)
. +.++.|.-+|-.|.|...++
T Consensus 78 -~---~~L~~g~d~iV~SVGALad~ 98 (255)
T COG1712 78 -P---KILKAGIDVIVMSVGALADE 98 (255)
T ss_pred -H---HHHhcCCCEEEEechhccCh
Confidence 3 34566666666666655543
No 157
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=98.50 E-value=4.3e-07 Score=82.05 Aligned_cols=114 Identities=25% Similarity=0.261 Sum_probs=80.7
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC----CCccCCCHHHH-hhcCCEEEEeeCChh--HH
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL----GAKYQPSPDEV-AASCDVTFAMLADPE--SA 141 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~----g~~~~~~~~~~-~~~aDivi~~~p~~~--~~ 141 (359)
..++++.|+|+|.+|++++..|...|++|++++|++++.+.+.+. +.....+.++. ..++|+||.++|... ..
T Consensus 115 ~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~ 194 (270)
T TIGR00507 115 RPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNI 194 (270)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCC
Confidence 446889999999999999999999999999999998776655442 21122233332 357999999998642 11
Q ss_pred HHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213 142 MDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (359)
Q Consensus 142 ~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (359)
.... -....++++.+++|++..++.+ .+.+..++.|+.+++
T Consensus 195 ~~~~----~~~~~l~~~~~v~D~~y~p~~T--~ll~~A~~~G~~~vd 235 (270)
T TIGR00507 195 DEPP----VPAEKLKEGMVVYDMVYNPGET--PFLAEAKSLGTKTID 235 (270)
T ss_pred CCCC----CCHHHcCCCCEEEEeccCCCCC--HHHHHHHHCCCeeeC
Confidence 1111 0123578899999998877655 577888888877766
No 158
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=98.49 E-value=2.6e-07 Score=85.10 Aligned_cols=94 Identities=22% Similarity=0.293 Sum_probs=68.1
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCC-CcEEEEcCCccchhHHHhC-CCccC--CCHHHHhhcCCEEEEeeCChhHHHHH
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISL-GAKYQ--PSPDEVAASCDVTFAMLADPESAMDV 144 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g-~~V~~~d~~~~~~~~~~~~-g~~~~--~~~~~~~~~aDivi~~~p~~~~~~~~ 144 (359)
+.+++|+|||+|.||..+++.|...| .+|++++|++++...+.+. |.... +++.+.+.++|+||.++|.+.. ..+
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~-~~~ 254 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHY-AKI 254 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCch-HHH
Confidence 56799999999999999999999866 6899999998876665543 44322 3456777899999999985543 343
Q ss_pred hcccccccccC-CCCCEEEeccC
Q 018213 145 ACGKHGAASGM-GPGKGYVDVST 166 (359)
Q Consensus 145 ~~~~~~~~~~l-~~~~~vi~~s~ 166 (359)
+ +...... .++.++||++.
T Consensus 255 ~---~~~~~~~~~~~~~viDlav 274 (311)
T cd05213 255 V---ERAMKKRSGKPRLIVDLAV 274 (311)
T ss_pred H---HHHHhhCCCCCeEEEEeCC
Confidence 3 3322222 36779999974
No 159
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.47 E-value=6.3e-07 Score=80.21 Aligned_cols=79 Identities=23% Similarity=0.232 Sum_probs=64.7
Q ss_pred ccCCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHh
Q 018213 67 ADELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA 145 (359)
Q Consensus 67 ~~~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~ 145 (359)
.++.+++|+|||. |.||..+|..|.+.|++|++|.... .++.+.+++||+||.+++.+..++..
T Consensus 154 i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t--------------~~l~~~~~~ADIVI~avg~~~~v~~~- 218 (284)
T PRK14179 154 VELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRT--------------RNLAEVARKADILVVAIGRGHFVTKE- 218 (284)
T ss_pred CCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCC--------------CCHHHHHhhCCEEEEecCccccCCHH-
Confidence 3488999999999 9999999999999999999994211 26788899999999999877554332
Q ss_pred cccccccccCCCCCEEEeccCCC
Q 018213 146 CGKHGAASGMGPGKGYVDVSTVD 168 (359)
Q Consensus 146 ~~~~~~~~~l~~~~~vi~~s~~~ 168 (359)
.+++|+++||++...
T Consensus 219 --------~ik~GavVIDvgin~ 233 (284)
T PRK14179 219 --------FVKEGAVVIDVGMNR 233 (284)
T ss_pred --------HccCCcEEEEeccee
Confidence 388999999997543
No 160
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=98.43 E-value=1.4e-06 Score=68.84 Aligned_cols=111 Identities=24% Similarity=0.325 Sum_probs=70.2
Q ss_pred CeEEEEcC-ChhhHHHHHHHHH-CCCcEE-EEcCCccc-----hhHHH---hCCCccCCCHHHHhhcCCEEEEeeCChhH
Q 018213 72 GRIGFLGM-GIMGTPMAQNLLK-AGCDVT-VWNRTKSK-----CDPLI---SLGAKYQPSPDEVAASCDVTFAMLADPES 140 (359)
Q Consensus 72 ~~igiiG~-G~iG~~ia~~l~~-~g~~V~-~~d~~~~~-----~~~~~---~~g~~~~~~~~~~~~~aDivi~~~p~~~~ 140 (359)
|||+|+|+ |+||+.+++.+.+ .++++. +++++++. ...+. ..++...+++++++..+|++|-.. .++.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT-~p~~ 79 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT-NPDA 79 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES--HHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC-ChHH
Confidence 57999999 9999999999988 678854 57776621 11111 236777889999999999999888 6777
Q ss_pred HHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCC
Q 018213 141 AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAP 190 (359)
Q Consensus 141 ~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~ 190 (359)
+...+ +.. ++.+..+|..++|......+..+.+.++ +.++-+|
T Consensus 80 ~~~~~---~~~---~~~g~~~ViGTTG~~~~~~~~l~~~a~~-~~vl~a~ 122 (124)
T PF01113_consen 80 VYDNL---EYA---LKHGVPLVIGTTGFSDEQIDELEELAKK-IPVLIAP 122 (124)
T ss_dssp HHHHH---HHH---HHHT-EEEEE-SSSHHHHHHHHHHHTTT-SEEEE-S
T ss_pred hHHHH---HHH---HhCCCCEEEECCCCCHHHHHHHHHHhcc-CCEEEeC
Confidence 77666 333 3447777776777654443444444333 4444444
No 161
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=98.39 E-value=2.8e-06 Score=77.49 Aligned_cols=109 Identities=14% Similarity=0.163 Sum_probs=72.8
Q ss_pred CCeEEEEcCChhhHHHHHHHHHC-CCcEE-EEcCCc-cchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcc
Q 018213 71 PGRIGFLGMGIMGTPMAQNLLKA-GCDVT-VWNRTK-SKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG 147 (359)
Q Consensus 71 ~~~igiiG~G~iG~~ia~~l~~~-g~~V~-~~d~~~-~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~ 147 (359)
+.||+|||+|+||+.+++.+... ++++. ++++++ ++.. ...++....+.++++.+.|+|++|+|...+.....
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~--~~~~v~~~~d~~e~l~~iDVViIctPs~th~~~~~-- 78 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLD--TETPVYAVADDEKHLDDVDVLILCMGSATDIPEQA-- 78 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHh--hcCCccccCCHHHhccCCCEEEEcCCCccCHHHHH--
Confidence 47899999999999999999765 68876 478875 3222 12344445577777888999999998665544443
Q ss_pred cccccccCCCCCEEEeccCC---ChHHHHHHHHHHHh-cCCeeec
Q 018213 148 KHGAASGMGPGKGYVDVSTV---DGDTSKLINGHIKA-TGASFLE 188 (359)
Q Consensus 148 ~~~~~~~l~~~~~vi~~s~~---~~~~~~~l~~~l~~-~~~~~~~ 188 (359)
+.+..|..+|++.-. .+...+.+.++.++ +++.++.
T Consensus 79 -----~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vsvi~ 118 (324)
T TIGR01921 79 -----PYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVSVIS 118 (324)
T ss_pred -----HHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEEEEE
Confidence 446677778876432 23445566666654 3444443
No 162
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=98.38 E-value=3.4e-06 Score=74.35 Aligned_cols=105 Identities=18% Similarity=0.235 Sum_probs=75.0
Q ss_pred CeEEEEcCChhhHHHHHHHHHCC---CcE-EEEcCCccchhHHHhCCCccCCCHHHH-hhcCCEEEEeeCChhHHHHHhc
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKAG---CDV-TVWNRTKSKCDPLISLGAKYQPSPDEV-AASCDVTFAMLADPESAMDVAC 146 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~g---~~V-~~~d~~~~~~~~~~~~g~~~~~~~~~~-~~~aDivi~~~p~~~~~~~~~~ 146 (359)
+||||||+|.||+.+++.+...+ +++ .+++|++++.+.+.+. +..+.+++++ ....|+|+.|.+ ...+++..
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~-~~~~~~l~~ll~~~~DlVVE~A~-~~av~e~~- 79 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGR-VALLDGLPGLLAWRPDLVVEAAG-QQAIAEHA- 79 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhcc-CcccCCHHHHhhcCCCEEEECCC-HHHHHHHH-
Confidence 68999999999999999987532 444 4577877666666544 7778899997 578999999995 66777665
Q ss_pred ccccccccCCCCCEEEeccCCChH---HHHHHHHHHHhcCC
Q 018213 147 GKHGAASGMGPGKGYVDVSTVDGD---TSKLINGHIKATGA 184 (359)
Q Consensus 147 ~~~~~~~~l~~~~~vi~~s~~~~~---~~~~l~~~l~~~~~ 184 (359)
..+ +..|.-++-.|.|... ..+.+.+..++.+.
T Consensus 80 --~~i---L~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~ 115 (267)
T PRK13301 80 --EGC---LTAGLDMIICSAGALADDALRARLIAAAEAGGA 115 (267)
T ss_pred --HHH---HhcCCCEEEEChhHhcCHHHHHHHHHHHHhCCC
Confidence 333 5566666666766544 45566666655543
No 163
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=98.37 E-value=4.8e-05 Score=66.50 Aligned_cols=113 Identities=15% Similarity=0.162 Sum_probs=86.8
Q ss_pred CCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec-CCCC
Q 018213 114 GAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVS 192 (359)
Q Consensus 114 g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~ 192 (359)
|++++++..|+++++|++|+-+|....+..++ +++++.+++|++|.|+++.++.....+.+.++++.+.+.+ +|
T Consensus 126 GvkVtsDD~EAv~~aei~I~ftPfG~~q~~Ii---kkii~~lpEgAII~~tCTIpt~~ly~ilE~l~R~DvgVsS~HP-- 200 (340)
T TIGR01723 126 GLKVTTDDREAVEDADIIITWLPKGNKQPDII---KKFIDDIPEGAIVTHACTIPTTKFAKIFEDLGREDLNVTSYHP-- 200 (340)
T ss_pred CceEecCcHHHhcCCCEEEEEcCCCCCchHHH---HHHHhhCCCCCEEeccccCChHHHHHHHHhhCcccCCeeccCC--
Confidence 56778888899999999999999999889999 8999999999999999999988766666666655444433 22
Q ss_pred CCCccccCCceEEEec--CCHHHHHHHHHHHHHhCCCeEEeCc
Q 018213 193 GSKKPAEDGQLIFLAA--GDKSLYNTVAPLLDIMGKSRFYLGD 233 (359)
Q Consensus 193 ~~~~~~~~~~~~~~~~--g~~~~~~~v~~ll~~lg~~~~~~g~ 233 (359)
+..+... +...+ .- .++|..+++.++.+..+..++.+..
T Consensus 201 aaVPgt~-~q~Yi-~egyAtEEqI~klveL~~sa~k~ay~~PA 241 (340)
T TIGR01723 201 GCVPEMK-GQVYI-AEGYASEEAVNKLYELGKKARGKAFKMPA 241 (340)
T ss_pred CCCCCCC-CceEe-ecccCCHHHHHHHHHHHHHhCCCeeecch
Confidence 2223333 23322 33 3899999999999999999887654
No 164
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=98.36 E-value=3.3e-06 Score=75.63 Aligned_cols=99 Identities=19% Similarity=0.219 Sum_probs=67.4
Q ss_pred CeEEEEcC-ChhhHHHHHHHHHC-CCcEE-EEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhccc
Q 018213 72 GRIGFLGM-GIMGTPMAQNLLKA-GCDVT-VWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK 148 (359)
Q Consensus 72 ~~igiiG~-G~iG~~ia~~l~~~-g~~V~-~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~ 148 (359)
++|+|+|+ |.||+.+++.+... ++++. ++|+++++.......++..+.+++++++++|+|+.++| +......+
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~-p~~~~~~~--- 77 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTT-PEATLENL--- 77 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCC-HHHHHHHH---
Confidence 78999998 99999999998764 67765 58887765443333356667899999888999998885 44444444
Q ss_pred ccccccCCCCCEEEeccCC-ChHHHHHHHH
Q 018213 149 HGAASGMGPGKGYVDVSTV-DGDTSKLING 177 (359)
Q Consensus 149 ~~~~~~l~~~~~vi~~s~~-~~~~~~~l~~ 177 (359)
...++.|..++..+++ ...+.+.+.+
T Consensus 78 ---~~al~~G~~vvigttG~s~~~~~~l~~ 104 (257)
T PRK00048 78 ---EFALEHGKPLVIGTTGFTEEQLAELEE 104 (257)
T ss_pred ---HHHHHcCCCEEEECCCCCHHHHHHHHH
Confidence 2345556655544444 4445555555
No 165
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=98.36 E-value=1.4e-06 Score=79.07 Aligned_cols=116 Identities=24% Similarity=0.195 Sum_probs=80.0
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCC-CcEEEEcCCccchhHHHhC-C----CccCCCHHHHhhcCCEEEEeeCChhHHH
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISL-G----AKYQPSPDEVAASCDVTFAMLADPESAM 142 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g-~~V~~~d~~~~~~~~~~~~-g----~~~~~~~~~~~~~aDivi~~~p~~~~~~ 142 (359)
+.++++.|+|+|.+|++++..|...| .+|++++|+.++.+.+.+. + +....+..+.+.++|+||.++|....-.
T Consensus 121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g~~~~ 200 (278)
T PRK00258 121 LKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAGMSGE 200 (278)
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCCCCCC
Confidence 67789999999999999999999999 6899999998877666543 1 1111133466688999999998654311
Q ss_pred HHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213 143 DVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (359)
Q Consensus 143 ~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (359)
.-. ..-....++++.+++|+.-.+. .+ .+.+..++.|+..++
T Consensus 201 ~~~--~~~~~~~l~~~~~v~DivY~P~-~T-~ll~~A~~~G~~~~~ 242 (278)
T PRK00258 201 LPL--PPLPLSLLRPGTIVYDMIYGPL-PT-PFLAWAKAQGARTID 242 (278)
T ss_pred CCC--CCCCHHHcCCCCEEEEeecCCC-CC-HHHHHHHHCcCeecC
Confidence 000 0111245678899999976443 33 566677777766554
No 166
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=98.36 E-value=3.5e-06 Score=75.79 Aligned_cols=107 Identities=15% Similarity=0.179 Sum_probs=69.4
Q ss_pred CeEEEEcCChhhHHHHHHHHHC-CCcEE-EEcCCcc--chhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcc
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKA-GCDVT-VWNRTKS--KCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG 147 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~-g~~V~-~~d~~~~--~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~ 147 (359)
+||||||+|+||+.+++.+... +.++. ++++... +.......++..+++++++-.+.|+|+.|.|.. ...+..
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~-~~~e~~-- 78 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHA-ALKEHV-- 78 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHH-HHHHHH--
Confidence 6899999999999999999875 46654 3444322 111111225667788888745689999999744 444443
Q ss_pred cccccccCCCCCEEEeccCC---ChHHHHHHHHHHHhcCCe
Q 018213 148 KHGAASGMGPGKGYVDVSTV---DGDTSKLINGHIKATGAS 185 (359)
Q Consensus 148 ~~~~~~~l~~~~~vi~~s~~---~~~~~~~l~~~l~~~~~~ 185 (359)
...++.|..++..+.+ .....+.+.+..++.|..
T Consensus 79 ----~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~ 115 (265)
T PRK13303 79 ----VPILKAGIDCAVISVGALADEALRERLEQAAEAGGAR 115 (265)
T ss_pred ----HHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCE
Confidence 2345667777765554 233456677777777654
No 167
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=98.35 E-value=1.2e-06 Score=81.16 Aligned_cols=93 Identities=18% Similarity=0.241 Sum_probs=70.9
Q ss_pred CCCeEEEEcCChhhHHHHHHHHHC--CCcEEEEcCCccchhHHHh----CC--CccCCCHHHHhhcCCEEEEeeCChhHH
Q 018213 70 LPGRIGFLGMGIMGTPMAQNLLKA--GCDVTVWNRTKSKCDPLIS----LG--AKYQPSPDEVAASCDVTFAMLADPESA 141 (359)
Q Consensus 70 ~~~~igiiG~G~iG~~ia~~l~~~--g~~V~~~d~~~~~~~~~~~----~g--~~~~~~~~~~~~~aDivi~~~p~~~~~ 141 (359)
...++||||+|.+|...++.+... ..+|.+|||++++.+.+.+ .| +..+.+.++++++||||+.|+|..
T Consensus 127 ~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~--- 203 (325)
T TIGR02371 127 DSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSR--- 203 (325)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCC---
Confidence 347899999999999988877542 3579999999988776544 24 355789999999999999999743
Q ss_pred HHHhcccccccccCCCCCEEEeccCCChH
Q 018213 142 MDVACGKHGAASGMGPGKGYVDVSTVDGD 170 (359)
Q Consensus 142 ~~~~~~~~~~~~~l~~~~~vi~~s~~~~~ 170 (359)
+.++ . ...+++|++|..++...|.
T Consensus 204 ~P~~--~---~~~l~~g~~v~~vGs~~p~ 227 (325)
T TIGR02371 204 KPVV--K---ADWVSEGTHINAIGADAPG 227 (325)
T ss_pred CcEe--c---HHHcCCCCEEEecCCCCcc
Confidence 2333 1 2357999999988776553
No 168
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=98.32 E-value=2.6e-06 Score=70.87 Aligned_cols=79 Identities=23% Similarity=0.324 Sum_probs=62.8
Q ss_pred cCCCCeEEEEcCChh-hHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhc
Q 018213 68 DELPGRIGFLGMGIM-GTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 146 (359)
Q Consensus 68 ~~~~~~igiiG~G~i-G~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~ 146 (359)
++.+++|.|||.|.| |..+++.|.+.|.+|++++|+. .++.+.+.++|+||.+++.+. ++
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~--------------~~l~~~l~~aDiVIsat~~~~----ii- 101 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT--------------KNLKEHTKQADIVIVAVGKPG----LV- 101 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc--------------hhHHHHHhhCCEEEEcCCCCc----ee-
Confidence 378899999999997 8889999999999999999863 255678899999999997553 34
Q ss_pred ccccccccCCCCCEEEeccCCCh
Q 018213 147 GKHGAASGMGPGKGYVDVSTVDG 169 (359)
Q Consensus 147 ~~~~~~~~l~~~~~vi~~s~~~~ 169 (359)
+.+ .++++.++||++....
T Consensus 102 -~~~---~~~~~~viIDla~prd 120 (168)
T cd01080 102 -KGD---MVKPGAVVIDVGINRV 120 (168)
T ss_pred -cHH---HccCCeEEEEccCCCc
Confidence 222 3577899999975443
No 169
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=98.31 E-value=7.3e-05 Score=65.28 Aligned_cols=112 Identities=15% Similarity=0.150 Sum_probs=85.8
Q ss_pred CCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec---CC
Q 018213 114 GAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE---AP 190 (359)
Q Consensus 114 g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~---~~ 190 (359)
|++++++..|+++++|++|+-+|....+..++ +++++.+++|++|.|+++.++...-.+.+.++++.+.+.+ +.
T Consensus 128 GvkVtsDD~EAvk~aei~I~ftPfG~~t~~Ii---kki~~~ipEgAII~~tCTIpt~~ly~~le~l~R~DvgIsS~HPaa 204 (342)
T PRK00961 128 GLKVTTDDREAVADADIVITWLPKGGMQPDII---EKFADDIKEGAIVTHACTIPTTKFAKIFKDLGRDDLNVTSYHPGA 204 (342)
T ss_pred CceEecCcHHHhcCCCEEEEecCCCCCchHHH---HHHHhhCCCCCEEeccccCCHHHHHHHHHHhCcccCCeeccCCCC
Confidence 56778888899999999999999999889999 8999999999999999999988766666666655444333 22
Q ss_pred CCCCCccccCCceEEEec-CCHHHHHHHHHHHHHhCCCeEEeCc
Q 018213 191 VSGSKKPAEDGQLIFLAA-GDKSLYNTVAPLLDIMGKSRFYLGD 233 (359)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~-g~~~~~~~v~~ll~~lg~~~~~~g~ 233 (359)
+-+.+ |+...--+ .++|..+++.++.++.++.++.+..
T Consensus 205 VPgt~-----Gq~~i~egyAtEEqI~klveL~~sa~k~ay~~PA 243 (342)
T PRK00961 205 VPEMK-----GQVYIAEGYADEEAVEKLYEIGKKARGNAFKMPA 243 (342)
T ss_pred CCCCC-----CceecccccCCHHHHHHHHHHHHHhCCCeeecch
Confidence 33322 23322111 3889999999999999999887754
No 170
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=98.31 E-value=2.5e-06 Score=77.45 Aligned_cols=113 Identities=19% Similarity=0.179 Sum_probs=79.1
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhC-----C-C--ccCCCHHHHhhcCCEEEEeeCChh
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL-----G-A--KYQPSPDEVAASCDVTFAMLADPE 139 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~-----g-~--~~~~~~~~~~~~aDivi~~~p~~~ 139 (359)
.+++++.|||+|.+|++++..|...|. +|+++||+.++.+.+.+. . . ....++.+.+.++|+||.++|...
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~Gm 204 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTGM 204 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCCC
Confidence 566899999999999999999999997 799999998887766542 1 1 112344556788999999998542
Q ss_pred HHH-H-HhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213 140 SAM-D-VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (359)
Q Consensus 140 ~~~-~-~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (359)
.-. . -+ + ...++++.+++|+.-.+..+ .+.+..++.|...++
T Consensus 205 ~~~~~~~~--~---~~~l~~~~~v~DivY~P~~T--~ll~~A~~~G~~~~~ 248 (284)
T PRK12549 205 AKHPGLPL--P---AELLRPGLWVADIVYFPLET--ELLRAARALGCRTLD 248 (284)
T ss_pred CCCCCCCC--C---HHHcCCCcEEEEeeeCCCCC--HHHHHHHHCCCeEec
Confidence 111 0 11 1 13467788999987655432 466666777766554
No 171
>PLN00203 glutamyl-tRNA reductase
Probab=98.25 E-value=2.1e-06 Score=83.86 Aligned_cols=70 Identities=24% Similarity=0.383 Sum_probs=56.9
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhC--CCc----cCCCHHHHhhcCCEEEEeeCCh
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL--GAK----YQPSPDEVAASCDVTFAMLADP 138 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~--g~~----~~~~~~~~~~~aDivi~~~p~~ 138 (359)
+.+++|+|||+|.||..+++.|...|. +|++++|++++.+.+.+. +.. ..+++.+.+.++|+||.|+|.+
T Consensus 264 l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s~ 340 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSSE 340 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCCC
Confidence 567899999999999999999999996 699999999887777653 221 2346667889999999998644
No 172
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=98.25 E-value=4.3e-06 Score=81.43 Aligned_cols=105 Identities=19% Similarity=0.286 Sum_probs=75.1
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC-CCccCCCHHHH--hhcCCEEEEeeCChhHHHHHh
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-GAKYQPSPDEV--AASCDVTFAMLADPESAMDVA 145 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-g~~~~~~~~~~--~~~aDivi~~~p~~~~~~~~~ 145 (359)
+++++++|+|+|.+|++++..|...|++|++++|+.++.+.+.+. +.... +.+++ +.++|+||.|+|....+...
T Consensus 330 ~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~-~~~~~~~l~~~DiVInatP~g~~~~~~- 407 (477)
T PRK09310 330 LNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAF-PLESLPELHRIDIIINCLPPSVTIPKA- 407 (477)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcccee-chhHhcccCCCCEEEEcCCCCCcchhH-
Confidence 667899999999999999999999999999999988776665442 21111 22222 46899999999976432211
Q ss_pred cccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213 146 CGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (359)
Q Consensus 146 ~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (359)
+. .+++|+...++.+. +.+..++.|...++
T Consensus 408 ---------l~--~~v~D~~Y~P~~T~--ll~~A~~~G~~~~~ 437 (477)
T PRK09310 408 ---------FP--PCVVDINTLPKHSP--YTQYARSQGSSIIY 437 (477)
T ss_pred ---------Hh--hhEEeccCCCCCCH--HHHHHHHCcCEEEC
Confidence 11 38889987766544 77777777766654
No 173
>PRK07340 ornithine cyclodeaminase; Validated
Probab=98.24 E-value=6.3e-06 Score=75.62 Aligned_cols=94 Identities=16% Similarity=0.215 Sum_probs=72.1
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHH-CC-CcEEEEcCCccchhHHHhC----CCcc-CCCHHHHhhcCCEEEEeeCChhHH
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLK-AG-CDVTVWNRTKSKCDPLISL----GAKY-QPSPDEVAASCDVTFAMLADPESA 141 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~-~g-~~V~~~d~~~~~~~~~~~~----g~~~-~~~~~~~~~~aDivi~~~p~~~~~ 141 (359)
...++++|||+|.+|+..++.+.. ++ .+|.+|+|++++.+.+.+. ++.. +.+.++++.++|+|+.|+|.+.
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~~-- 200 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSRT-- 200 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCCC--
Confidence 345799999999999999999965 56 4699999999887766543 2222 4688899999999999998542
Q ss_pred HHHhcccccccccCCCCCEEEeccCCChHH
Q 018213 142 MDVACGKHGAASGMGPGKGYVDVSTVDGDT 171 (359)
Q Consensus 142 ~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~ 171 (359)
.++ .. .+++|++|..+++-.|..
T Consensus 201 -Pl~---~~---~~~~g~hi~~iGs~~p~~ 223 (304)
T PRK07340 201 -PVY---PE---AARAGRLVVAVGAFTPDM 223 (304)
T ss_pred -cee---Cc---cCCCCCEEEecCCCCCCc
Confidence 455 22 468999999988776643
No 174
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=98.21 E-value=1.1e-05 Score=75.36 Aligned_cols=109 Identities=17% Similarity=0.241 Sum_probs=79.4
Q ss_pred CCeEEEEcCChhh-HHHHHHHHHCCC--c-EEEEcCCccchhHHHh-CCC-ccCCCHHHHhhc--CCEEEEeeCChhHHH
Q 018213 71 PGRIGFLGMGIMG-TPMAQNLLKAGC--D-VTVWNRTKSKCDPLIS-LGA-KYQPSPDEVAAS--CDVTFAMLADPESAM 142 (359)
Q Consensus 71 ~~~igiiG~G~iG-~~ia~~l~~~g~--~-V~~~d~~~~~~~~~~~-~g~-~~~~~~~~~~~~--aDivi~~~p~~~~~~ 142 (359)
++||||||+|.++ ...+..+...+. + |.++|+++++.+.+.+ .++ ..+++.+++++. .|+|++++|...+..
T Consensus 3 ~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H~e 82 (342)
T COG0673 3 MIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALHAE 82 (342)
T ss_pred eeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhhHH
Confidence 4789999999666 568888888763 3 5678999988777665 466 478899999986 599999999766665
Q ss_pred HHhcccccccccCCCCCEEEec--cCCChHHHHHHHHHHHhcCCee
Q 018213 143 DVACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASF 186 (359)
Q Consensus 143 ~~~~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~ 186 (359)
.++ ..++.|+.|+.- -...+.+.+++.+..++.+..+
T Consensus 83 ~~~-------~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~~~~l 121 (342)
T COG0673 83 LAL-------AALEAGKHVLCEKPLALTLEEAEELVELARKAGVKL 121 (342)
T ss_pred HHH-------HHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHcCCce
Confidence 554 456677777654 2335667778888887766543
No 175
>PRK08618 ornithine cyclodeaminase; Validated
Probab=98.18 E-value=6.2e-06 Score=76.48 Aligned_cols=92 Identities=17% Similarity=0.171 Sum_probs=70.9
Q ss_pred CCCeEEEEcCChhhHHHHHHHHH-CC-CcEEEEcCCccchhHHHh-----CCC--ccCCCHHHHhhcCCEEEEeeCChhH
Q 018213 70 LPGRIGFLGMGIMGTPMAQNLLK-AG-CDVTVWNRTKSKCDPLIS-----LGA--KYQPSPDEVAASCDVTFAMLADPES 140 (359)
Q Consensus 70 ~~~~igiiG~G~iG~~ia~~l~~-~g-~~V~~~d~~~~~~~~~~~-----~g~--~~~~~~~~~~~~aDivi~~~p~~~~ 140 (359)
..++++|||+|.+|+..+..+.. .+ .+|.+|+|++++.+.+.+ .++ ..+.+.+++++++|+|+.|+|..
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~-- 203 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAK-- 203 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCC--
Confidence 44789999999999999987753 45 479999999988776654 133 34678899999999999999854
Q ss_pred HHHHhcccccccccCCCCCEEEeccCCChH
Q 018213 141 AMDVACGKHGAASGMGPGKGYVDVSTVDGD 170 (359)
Q Consensus 141 ~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~ 170 (359)
..++ . ..+++|++|+.+++-.|.
T Consensus 204 -~p~i---~---~~l~~G~hV~~iGs~~p~ 226 (325)
T PRK08618 204 -TPVF---S---EKLKKGVHINAVGSFMPD 226 (325)
T ss_pred -Ccch---H---HhcCCCcEEEecCCCCcc
Confidence 3444 2 467999999988776553
No 176
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.17 E-value=8e-06 Score=73.24 Aligned_cols=79 Identities=23% Similarity=0.294 Sum_probs=64.3
Q ss_pred ccCCCCeEEEEcCChh-hHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHh
Q 018213 67 ADELPGRIGFLGMGIM-GTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA 145 (359)
Q Consensus 67 ~~~~~~~igiiG~G~i-G~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~ 145 (359)
.++.++++.|||.|.+ |+.++..|...|..|+++.... .++.+.+++|||||.++|.+. ++
T Consensus 154 i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t--------------~~l~~~~~~ADIVV~avG~~~----~i 215 (285)
T PRK14189 154 IPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKT--------------RDLAAHTRQADIVVAAVGKRN----VL 215 (285)
T ss_pred CCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCC--------------CCHHHHhhhCCEEEEcCCCcC----cc
Confidence 3478999999999988 9999999999999999886432 367788999999999998543 44
Q ss_pred cccccccccCCCCCEEEeccCCC
Q 018213 146 CGKHGAASGMGPGKGYVDVSTVD 168 (359)
Q Consensus 146 ~~~~~~~~~l~~~~~vi~~s~~~ 168 (359)
+. .++++|+++||++...
T Consensus 216 --~~---~~ik~gavVIDVGin~ 233 (285)
T PRK14189 216 --TA---DMVKPGATVIDVGMNR 233 (285)
T ss_pred --CH---HHcCCCCEEEEccccc
Confidence 21 5689999999997543
No 177
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=98.17 E-value=1.9e-05 Score=71.02 Aligned_cols=113 Identities=18% Similarity=0.236 Sum_probs=71.9
Q ss_pred CeEEEEc-CChhhHHHHHHHHH-CCCcEE-EEcCC-ccch-hHHHh------CCCccCCCHHHHhhcCCEEEEeeCChhH
Q 018213 72 GRIGFLG-MGIMGTPMAQNLLK-AGCDVT-VWNRT-KSKC-DPLIS------LGAKYQPSPDEVAASCDVTFAMLADPES 140 (359)
Q Consensus 72 ~~igiiG-~G~iG~~ia~~l~~-~g~~V~-~~d~~-~~~~-~~~~~------~g~~~~~~~~~~~~~aDivi~~~p~~~~ 140 (359)
+||+|+| +|+||+.+++.+.. .++++. ++||. ++.. +...+ .++..+++++++...+|+||.++| +..
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~-p~~ 80 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTT-PEG 80 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCC-hHH
Confidence 6899999 69999999999986 467765 47743 2221 11111 246667888888557899999996 555
Q ss_pred HHHHhcccccccccCCCCCEEEeccCC-ChHHHHHHHHHHHhcCCeeecCCC
Q 018213 141 AMDVACGKHGAASGMGPGKGYVDVSTV-DGDTSKLINGHIKATGASFLEAPV 191 (359)
Q Consensus 141 ~~~~~~~~~~~~~~l~~~~~vi~~s~~-~~~~~~~l~~~l~~~~~~~~~~~~ 191 (359)
....+ ...++.|..+|..+++ .+.+.+.+.++.+..++.++-++.
T Consensus 81 ~~~~~------~~al~~g~~vVigttg~~~e~~~~l~~aA~~~g~~v~~a~N 126 (266)
T TIGR00036 81 VLNHL------KFALEHGVRLVVGTTGFSEEDKQELADLAEKAGIAAVIAPN 126 (266)
T ss_pred HHHHH------HHHHHCCCCEEEECCCCCHHHHHHHHHHHhcCCccEEEECc
Confidence 55554 2345556555543344 445566666666665655554443
No 178
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=98.16 E-value=6.6e-06 Score=64.90 Aligned_cols=92 Identities=17% Similarity=0.294 Sum_probs=58.5
Q ss_pred eEEEEc-CChhhHHHHHHHHHC-CCcEEEE-cCCccchhHHHhCC--Cc-c-CC--CHHHH-hhcCCEEEEeeCChhHHH
Q 018213 73 RIGFLG-MGIMGTPMAQNLLKA-GCDVTVW-NRTKSKCDPLISLG--AK-Y-QP--SPDEV-AASCDVTFAMLADPESAM 142 (359)
Q Consensus 73 ~igiiG-~G~iG~~ia~~l~~~-g~~V~~~-d~~~~~~~~~~~~g--~~-~-~~--~~~~~-~~~aDivi~~~p~~~~~~ 142 (359)
||+|+| .|.+|..++..+... ++++..+ +++.++.+.+...+ +. . .. +.+++ ..++|+|++|+|.. ...
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~-~~~ 79 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHG-VSK 79 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcH-HHH
Confidence 589999 599999999999884 7777655 55433333333221 11 0 01 11122 14899999999854 555
Q ss_pred HHhcccccccccCCCCCEEEeccCCC
Q 018213 143 DVACGKHGAASGMGPGKGYVDVSTVD 168 (359)
Q Consensus 143 ~~~~~~~~~~~~l~~~~~vi~~s~~~ 168 (359)
.++ ..+...+++|+++||+|+..
T Consensus 80 ~~~---~~~~~~~~~g~~viD~s~~~ 102 (122)
T smart00859 80 EIA---PLLPKAAEAGVKVIDLSSAF 102 (122)
T ss_pred HHH---HHHHhhhcCCCEEEECCccc
Confidence 554 33345578999999998653
No 179
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.16 E-value=9.4e-06 Score=72.89 Aligned_cols=77 Identities=18% Similarity=0.273 Sum_probs=63.6
Q ss_pred cCCCCeEEEEcCCh-hhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhc
Q 018213 68 DELPGRIGFLGMGI-MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 146 (359)
Q Consensus 68 ~~~~~~igiiG~G~-iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~ 146 (359)
+++++++.|||.|. +|+.+|..|...|.+|++++++. .++.+.+++||+||.+++.+. ++
T Consensus 155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t--------------~~l~~~~~~ADIVIsAvg~p~----~i- 215 (286)
T PRK14175 155 DLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS--------------KDMASYLKDADVIVSAVGKPG----LV- 215 (286)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHHhhCCEEEECCCCCc----cc-
Confidence 48899999999988 99999999999999999998642 256788899999999998653 33
Q ss_pred ccccccccCCCCCEEEeccCC
Q 018213 147 GKHGAASGMGPGKGYVDVSTV 167 (359)
Q Consensus 147 ~~~~~~~~l~~~~~vi~~s~~ 167 (359)
.. ..+++|+++||++..
T Consensus 216 -~~---~~vk~gavVIDvGi~ 232 (286)
T PRK14175 216 -TK---DVVKEGAVIIDVGNT 232 (286)
T ss_pred -CH---HHcCCCcEEEEcCCC
Confidence 22 247899999999753
No 180
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=98.15 E-value=1.5e-05 Score=73.14 Aligned_cols=65 Identities=14% Similarity=0.166 Sum_probs=49.2
Q ss_pred CeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHH----hC--------CCccCCCHHHHhhcCCEEEEeeCC
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLI----SL--------GAKYQPSPDEVAASCDVTFAMLAD 137 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~----~~--------g~~~~~~~~~~~~~aDivi~~~p~ 137 (359)
|||+|||+|.||..+|..++..|+ +|.++|++.+..+... +. .+....+.++ +++||+||++++.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~ 79 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGL 79 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCC
Confidence 689999999999999999999886 8999999765433111 10 1233467766 6899999999974
No 181
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=98.13 E-value=4.5e-06 Score=80.01 Aligned_cols=71 Identities=24% Similarity=0.353 Sum_probs=56.3
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCC-CcEEEEcCCccchhHHHhC-CCcc--CCCHHHHhhcCCEEEEeeCChh
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISL-GAKY--QPSPDEVAASCDVTFAMLADPE 139 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g-~~V~~~d~~~~~~~~~~~~-g~~~--~~~~~~~~~~aDivi~~~p~~~ 139 (359)
+.+++|+|||+|.||..+++.|...| .+|++++|++++...+.+. +... ..++.+.+.++|+||.|++.+.
T Consensus 178 l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s~~ 252 (417)
T TIGR01035 178 LKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGAPH 252 (417)
T ss_pred ccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCCCC
Confidence 66789999999999999999999999 7899999998776655442 3222 2356677889999999986543
No 182
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=98.13 E-value=2.5e-06 Score=81.97 Aligned_cols=71 Identities=25% Similarity=0.353 Sum_probs=56.0
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhC-CCcc--CCCHHHHhhcCCEEEEeeCChh
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL-GAKY--QPSPDEVAASCDVTFAMLADPE 139 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~-g~~~--~~~~~~~~~~aDivi~~~p~~~ 139 (359)
+.+++|+|||+|.||..+++.|...|. +|++++|++++...+.+. |... ..+..+.+.++|+||.|+|.+.
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~~ 254 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAPH 254 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCCC
Confidence 667899999999999999999999997 799999998876655543 4322 2345567788999999997543
No 183
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=98.13 E-value=6e-06 Score=70.77 Aligned_cols=97 Identities=21% Similarity=0.131 Sum_probs=67.4
Q ss_pred CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC-----CCc--c--CCC---HHHHhhcCCEEEEee
Q 018213 69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-----GAK--Y--QPS---PDEVAASCDVTFAML 135 (359)
Q Consensus 69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-----g~~--~--~~~---~~~~~~~aDivi~~~ 135 (359)
++++++.|+|. |.+|+.+++.|...|++|++++|+.++.+.+.+. +.. . ..+ +.+.++++|+||.++
T Consensus 26 l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~at 105 (194)
T cd01078 26 LKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAAG 105 (194)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEECC
Confidence 66789999995 9999999999999999999999998766554431 111 1 122 246778899999999
Q ss_pred CChhHHHHHhcccccccccCCCCCEEEeccCCChHH
Q 018213 136 ADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDT 171 (359)
Q Consensus 136 p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~ 171 (359)
|.+..+... .....+++.+++|+....+..
T Consensus 106 ~~g~~~~~~------~~~~~~~~~vv~D~~~~~~~~ 135 (194)
T cd01078 106 AAGVELLEK------LAWAPKPLAVAADVNAVPPVG 135 (194)
T ss_pred CCCceechh------hhcccCceeEEEEccCCCCCC
Confidence 866541111 112344578899987766543
No 184
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=98.13 E-value=9.7e-06 Score=74.39 Aligned_cols=111 Identities=14% Similarity=0.234 Sum_probs=81.2
Q ss_pred CeEEEEcCChhhHHHHHHHHH-CC-CcEEEEcCCccchhHHHh----CC---CccCCCHHHHhhcCCEEEEeeCChhHHH
Q 018213 72 GRIGFLGMGIMGTPMAQNLLK-AG-CDVTVWNRTKSKCDPLIS----LG---AKYQPSPDEVAASCDVTFAMLADPESAM 142 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~-~g-~~V~~~d~~~~~~~~~~~----~g---~~~~~~~~~~~~~aDivi~~~p~~~~~~ 142 (359)
.+++|||+|..+...++.+.. ++ -+|.+|+|+++..+.+.. .+ +..+++.++++++||||+.|+|...
T Consensus 131 ~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~--- 207 (330)
T COG2423 131 STLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE--- 207 (330)
T ss_pred cEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC---
Confidence 689999999999999999875 44 479999999988777653 22 4678899999999999999998554
Q ss_pred HHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCC
Q 018213 143 DVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAP 190 (359)
Q Consensus 143 ~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~ 190 (359)
.++ . .+++++|++|..++...|.-.+--.+.+...+..+++.+
T Consensus 208 Pil--~---~~~l~~G~hI~aiGad~p~k~Eld~e~l~ra~~vvvD~~ 250 (330)
T COG2423 208 PVL--K---AEWLKPGTHINAIGADAPGKRELDPEVLARADRVVVDSL 250 (330)
T ss_pred Cee--c---HhhcCCCcEEEecCCCCcccccCCHHHHHhcCeEEEcCH
Confidence 555 1 346889999998877655443333334433335566643
No 185
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=98.13 E-value=9.3e-06 Score=63.33 Aligned_cols=104 Identities=21% Similarity=0.318 Sum_probs=73.6
Q ss_pred CeEEEEc----CChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcc
Q 018213 72 GRIGFLG----MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG 147 (359)
Q Consensus 72 ~~igiiG----~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~ 147 (359)
++|+||| -+..|..+.+.|.+.|++|+..++..+... |...+.+++|.-...|++++++| +..+..++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~-----G~~~y~sl~e~p~~iDlavv~~~-~~~~~~~v-- 72 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEIL-----GIKCYPSLAEIPEPIDLAVVCVP-PDKVPEIV-- 72 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEET-----TEE-BSSGGGCSST-SEEEE-S--HHHHHHHH--
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEEC-----cEEeeccccCCCCCCCEEEEEcC-HHHHHHHH--
Confidence 4699999 689999999999999999999988765432 67778899884478999999997 77888888
Q ss_pred cccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecC
Q 018213 148 KHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA 189 (359)
Q Consensus 148 ~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~ 189 (359)
+++.. +..+.+++..+ ...+++.+.+++.|+.+++.
T Consensus 73 -~~~~~-~g~~~v~~~~g----~~~~~~~~~a~~~gi~vigp 108 (116)
T PF13380_consen 73 -DEAAA-LGVKAVWLQPG----AESEELIEAAREAGIRVIGP 108 (116)
T ss_dssp -HHHHH-HT-SEEEE-TT----S--HHHHHHHHHTT-EEEES
T ss_pred -HHHHH-cCCCEEEEEcc----hHHHHHHHHHHHcCCEEEeC
Confidence 66544 34556666554 55667888888899988853
No 186
>PRK06823 ornithine cyclodeaminase; Validated
Probab=98.12 E-value=8.6e-06 Score=74.91 Aligned_cols=94 Identities=19% Similarity=0.275 Sum_probs=71.4
Q ss_pred CCCeEEEEcCChhhHHHHHHHHHC-C-CcEEEEcCCccchhHHHh----CCC--ccCCCHHHHhhcCCEEEEeeCChhHH
Q 018213 70 LPGRIGFLGMGIMGTPMAQNLLKA-G-CDVTVWNRTKSKCDPLIS----LGA--KYQPSPDEVAASCDVTFAMLADPESA 141 (359)
Q Consensus 70 ~~~~igiiG~G~iG~~ia~~l~~~-g-~~V~~~d~~~~~~~~~~~----~g~--~~~~~~~~~~~~aDivi~~~p~~~~~ 141 (359)
..++++|||+|..+...++.+... . -+|.+|+|++++.+.+.+ .++ ..+++.++++++||||+.++|.+
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~--- 203 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSR--- 203 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCC---
Confidence 347899999999999999988753 2 479999999988776553 133 33678999999999999998643
Q ss_pred HHHhcccccccccCCCCCEEEeccCCChHH
Q 018213 142 MDVACGKHGAASGMGPGKGYVDVSTVDGDT 171 (359)
Q Consensus 142 ~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~ 171 (359)
..++ + .+++++|++|+.+++..|..
T Consensus 204 ~P~~--~---~~~l~~G~hi~~iGs~~p~~ 228 (315)
T PRK06823 204 EPLL--Q---AEDIQPGTHITAVGADSPGK 228 (315)
T ss_pred Ccee--C---HHHcCCCcEEEecCCCCccc
Confidence 2444 1 24678999999888766643
No 187
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=98.12 E-value=8e-06 Score=74.73 Aligned_cols=93 Identities=8% Similarity=0.089 Sum_probs=70.8
Q ss_pred CCCeEEEEcCChhhHHHHHHHHHC-C-CcEEEEcCCccchhHHHhC-----C--CccCCCHHHHhhcCCEEEEeeCChhH
Q 018213 70 LPGRIGFLGMGIMGTPMAQNLLKA-G-CDVTVWNRTKSKCDPLISL-----G--AKYQPSPDEVAASCDVTFAMLADPES 140 (359)
Q Consensus 70 ~~~~igiiG~G~iG~~ia~~l~~~-g-~~V~~~d~~~~~~~~~~~~-----g--~~~~~~~~~~~~~aDivi~~~p~~~~ 140 (359)
..++++|||+|..|...++.+... + -+|.+|+|++++.+.+.+. | +..+++.++++++||||+.++|..
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~-- 193 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSD-- 193 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC--
Confidence 347899999999999999988763 3 3799999999887766532 3 445789999999999999998743
Q ss_pred HHHHhcccccccccCCCCCEEEeccCCChH
Q 018213 141 AMDVACGKHGAASGMGPGKGYVDVSTVDGD 170 (359)
Q Consensus 141 ~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~ 170 (359)
..++ + .+++++|.+|.-++...|.
T Consensus 194 -~P~~--~---~~~l~pg~hV~aiGs~~p~ 217 (301)
T PRK06407 194 -TPIF--N---RKYLGDEYHVNLAGSNYPN 217 (301)
T ss_pred -CcEe--c---HHHcCCCceEEecCCCCCC
Confidence 2444 1 2367899888877766553
No 188
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=98.11 E-value=4.5e-06 Score=69.80 Aligned_cols=96 Identities=24% Similarity=0.264 Sum_probs=67.2
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccC--------------------------CCHH
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ--------------------------PSPD 122 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~--------------------------~~~~ 122 (359)
..+.+|.|+|.|+.|..-++.+...|++|+.+|.++++.+.....+.... ..+.
T Consensus 18 ~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 97 (168)
T PF01262_consen 18 VPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFA 97 (168)
T ss_dssp E-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHH
T ss_pred CCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHHH
Confidence 56689999999999999999999999999999998876665554432111 1245
Q ss_pred HHhhcCCEEEEeeC-ChhHHHHHhcccccccccCCCCCEEEeccC
Q 018213 123 EVAASCDVTFAMLA-DPESAMDVACGKHGAASGMGPGKGYVDVST 166 (359)
Q Consensus 123 ~~~~~aDivi~~~p-~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~ 166 (359)
+.++.+|+||.++- .......++ .++.++.|+++.+|+|+|-
T Consensus 98 ~~i~~~d~vI~~~~~~~~~~P~lv--t~~~~~~m~~gsvIvDis~ 140 (168)
T PF01262_consen 98 EFIAPADIVIGNGLYWGKRAPRLV--TEEMVKSMKPGSVIVDISC 140 (168)
T ss_dssp HHHHH-SEEEEHHHBTTSS---SB--EHHHHHTSSTTEEEEETTG
T ss_pred HHHhhCcEEeeecccCCCCCCEEE--EhHHhhccCCCceEEEEEe
Confidence 66778999997552 233455555 5677788999999999954
No 189
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=98.10 E-value=7.6e-06 Score=76.84 Aligned_cols=68 Identities=26% Similarity=0.307 Sum_probs=57.2
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCC-CcEEEEcCCccchhHHHhC-CC--ccCCCHHHHhhcCCEEEEeeC
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISL-GA--KYQPSPDEVAASCDVTFAMLA 136 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g-~~V~~~d~~~~~~~~~~~~-g~--~~~~~~~~~~~~aDivi~~~p 136 (359)
++++++.|||+|.||..+|+.|...| .+|++.+|+.++...+++. |. ...+++.+.+.++|+||.++.
T Consensus 176 L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTs 247 (414)
T COG0373 176 LKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTS 247 (414)
T ss_pred cccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecC
Confidence 67899999999999999999999999 5799999999988877654 43 334466677889999999974
No 190
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=98.08 E-value=1.1e-05 Score=74.86 Aligned_cols=92 Identities=14% Similarity=0.276 Sum_probs=69.2
Q ss_pred CCCeEEEEcCChhhHHHHHHHH-HCCC-cEEEEcCCccchhHHHhC-----CCc--cCCCHHHHhhcCCEEEEeeCChhH
Q 018213 70 LPGRIGFLGMGIMGTPMAQNLL-KAGC-DVTVWNRTKSKCDPLISL-----GAK--YQPSPDEVAASCDVTFAMLADPES 140 (359)
Q Consensus 70 ~~~~igiiG~G~iG~~ia~~l~-~~g~-~V~~~d~~~~~~~~~~~~-----g~~--~~~~~~~~~~~aDivi~~~p~~~~ 140 (359)
..++++|||+|.+|+..++.|. ..+. +|.+|+|++++.+.+.+. ++. ..+++++++.++|+|+.|+|.+.
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~~- 206 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSET- 206 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCCC-
Confidence 3468999999999999999997 4664 699999999887766542 433 36788999999999999997532
Q ss_pred HHHHhcccccccccCCCCCEEEeccCCCh
Q 018213 141 AMDVACGKHGAASGMGPGKGYVDVSTVDG 169 (359)
Q Consensus 141 ~~~~~~~~~~~~~~l~~~~~vi~~s~~~~ 169 (359)
.++ . .+.+++|.++..++.-.|
T Consensus 207 --p~i--~---~~~l~~g~~i~~vg~~~p 228 (326)
T TIGR02992 207 --PIL--H---AEWLEPGQHVTAMGSDAE 228 (326)
T ss_pred --cEe--c---HHHcCCCcEEEeeCCCCC
Confidence 344 1 135789998887765433
No 191
>PTZ00117 malate dehydrogenase; Provisional
Probab=98.06 E-value=2.6e-05 Score=72.07 Aligned_cols=66 Identities=18% Similarity=0.226 Sum_probs=49.3
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCC-CcEEEEcCCccchhHHH----h----CC----CccCCCHHHHhhcCCEEEEee
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLI----S----LG----AKYQPSPDEVAASCDVTFAML 135 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g-~~V~~~d~~~~~~~~~~----~----~g----~~~~~~~~~~~~~aDivi~~~ 135 (359)
.+.+||+|||+|.||..++..+...| .++.++|++++..+... . .+ +....+.+ .+++||+|+++.
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita 81 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA 81 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence 34579999999999999999999888 68999999876543211 0 01 12234555 679999999998
No 192
>PRK06223 malate dehydrogenase; Reviewed
Probab=98.04 E-value=2.8e-05 Score=71.68 Aligned_cols=63 Identities=19% Similarity=0.220 Sum_probs=47.2
Q ss_pred CeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHH----hC----C----CccCCCHHHHhhcCCEEEEee
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLI----SL----G----AKYQPSPDEVAASCDVTFAML 135 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~----~~----g----~~~~~~~~~~~~~aDivi~~~ 135 (359)
+||+|||+|.||..+|..++..|+ +|.++|++++..+... +. + +....+.+ .+++||+||+++
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~-~~~~aDiVii~~ 78 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYE-DIAGSDVVVITA 78 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHH-HHCCCCEEEECC
Confidence 789999999999999999998775 9999999876543211 11 1 11234554 578999999987
No 193
>PRK06046 alanine dehydrogenase; Validated
Probab=98.04 E-value=1.2e-05 Score=74.58 Aligned_cols=92 Identities=20% Similarity=0.281 Sum_probs=68.9
Q ss_pred CCCeEEEEcCChhhHHHHHHHHH-CCC-cEEEEcCCccchhHHHhC-----C--CccCCCHHHHhhcCCEEEEeeCChhH
Q 018213 70 LPGRIGFLGMGIMGTPMAQNLLK-AGC-DVTVWNRTKSKCDPLISL-----G--AKYQPSPDEVAASCDVTFAMLADPES 140 (359)
Q Consensus 70 ~~~~igiiG~G~iG~~ia~~l~~-~g~-~V~~~d~~~~~~~~~~~~-----g--~~~~~~~~~~~~~aDivi~~~p~~~~ 140 (359)
...+|+|||+|.+|...++.+.. .+. .|.+|||++++.+.+.+. + +..+++.+++++ +|+|++|+|..
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~-- 204 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSR-- 204 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCC--
Confidence 34789999999999999998874 343 688999998877765542 3 344678899887 99999999853
Q ss_pred HHHHhcccccccccCCCCCEEEeccCCChH
Q 018213 141 AMDVACGKHGAASGMGPGKGYVDVSTVDGD 170 (359)
Q Consensus 141 ~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~ 170 (359)
..++ + .+++++|++|..++.-.|.
T Consensus 205 -~P~~--~---~~~l~~g~hV~~iGs~~p~ 228 (326)
T PRK06046 205 -KPVV--K---AEWIKEGTHINAIGADAPG 228 (326)
T ss_pred -CcEe--c---HHHcCCCCEEEecCCCCCc
Confidence 2444 1 2357899998888766553
No 194
>PRK11579 putative oxidoreductase; Provisional
Probab=98.04 E-value=5.3e-05 Score=71.02 Aligned_cols=107 Identities=16% Similarity=0.197 Sum_probs=72.8
Q ss_pred CCeEEEEcCChhhHH-HHHHHHHC-CCcEE-EEcCCccchhHHHhC-CCccCCCHHHHhh--cCCEEEEeeCChhHHHHH
Q 018213 71 PGRIGFLGMGIMGTP-MAQNLLKA-GCDVT-VWNRTKSKCDPLISL-GAKYQPSPDEVAA--SCDVTFAMLADPESAMDV 144 (359)
Q Consensus 71 ~~~igiiG~G~iG~~-ia~~l~~~-g~~V~-~~d~~~~~~~~~~~~-g~~~~~~~~~~~~--~aDivi~~~p~~~~~~~~ 144 (359)
+.||||||+|.||.. .+..+... ++++. ++|+++++.. .+. +...+++++++++ +.|+|++|+|...+.+.+
T Consensus 4 ~irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~--~~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~H~~~~ 81 (346)
T PRK11579 4 KIRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVK--ADWPTVTVVSEPQHLFNDPNIDLIVIPTPNDTHFPLA 81 (346)
T ss_pred cceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHH--hhCCCCceeCCHHHHhcCCCCCEEEEcCCcHHHHHHH
Confidence 368999999999984 56666553 57765 6888765432 222 4556789999996 479999999976655555
Q ss_pred hcccccccccCCCCCEEEec--cCCChHHHHHHHHHHHhcCCee
Q 018213 145 ACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASF 186 (359)
Q Consensus 145 ~~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~ 186 (359)
+ ..++.|+.|+.- -.....+.+++.++.++.++.+
T Consensus 82 ~-------~al~aGkhVl~EKPla~t~~ea~~l~~~a~~~g~~l 118 (346)
T PRK11579 82 K-------AALEAGKHVVVDKPFTVTLSQARELDALAKSAGRVL 118 (346)
T ss_pred H-------HHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHhCCEE
Confidence 4 345667766633 2234556677877777766544
No 195
>PRK08291 ectoine utilization protein EutC; Validated
Probab=98.04 E-value=1.6e-05 Score=73.89 Aligned_cols=89 Identities=19% Similarity=0.269 Sum_probs=66.2
Q ss_pred CCCeEEEEcCChhhHHHHHHHHH-CC-CcEEEEcCCccchhHHHhC-----CCc--cCCCHHHHhhcCCEEEEeeCChhH
Q 018213 70 LPGRIGFLGMGIMGTPMAQNLLK-AG-CDVTVWNRTKSKCDPLISL-----GAK--YQPSPDEVAASCDVTFAMLADPES 140 (359)
Q Consensus 70 ~~~~igiiG~G~iG~~ia~~l~~-~g-~~V~~~d~~~~~~~~~~~~-----g~~--~~~~~~~~~~~aDivi~~~p~~~~ 140 (359)
..++++|||+|.+|...+..+.. .+ .+|.+|+|++++.+.+.+. ++. .++++++++.++|+|+.++|...
T Consensus 131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~~- 209 (330)
T PRK08291 131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSEE- 209 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCCC-
Confidence 34789999999999999998875 45 5799999999887776542 333 36788999999999999997532
Q ss_pred HHHHhcccccccccCCCCCEEEeccC
Q 018213 141 AMDVACGKHGAASGMGPGKGYVDVST 166 (359)
Q Consensus 141 ~~~~~~~~~~~~~~l~~~~~vi~~s~ 166 (359)
.++ . ...+++|+.+..++.
T Consensus 210 --p~i---~--~~~l~~g~~v~~vg~ 228 (330)
T PRK08291 210 --PIL---K--AEWLHPGLHVTAMGS 228 (330)
T ss_pred --cEe---c--HHHcCCCceEEeeCC
Confidence 333 1 124678887765544
No 196
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=98.03 E-value=6.8e-05 Score=69.64 Aligned_cols=108 Identities=10% Similarity=0.150 Sum_probs=79.5
Q ss_pred CeEEEEcCChhhHHHHHHHHHC--CCcEE-EEcCCccchhHHHh-CCCccCCCHHHHhhcCCEEEEeeCCh----hHHHH
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKA--GCDVT-VWNRTKSKCDPLIS-LGAKYQPSPDEVAASCDVTFAMLADP----ESAMD 143 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~--g~~V~-~~d~~~~~~~~~~~-~g~~~~~~~~~~~~~aDivi~~~p~~----~~~~~ 143 (359)
.||||||+ .+|...++.+... ++++. ++|+++++.+.+.+ .|+..+++.++++.+.|++++++|.+ .+.+-
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H~e~ 82 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQGSAL 82 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccHHHH
Confidence 68999999 6899999999875 46654 68999888777665 47778899999999899999998642 22222
Q ss_pred HhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeee
Q 018213 144 VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL 187 (359)
Q Consensus 144 ~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~ 187 (359)
. ...++.|..|+..=-....+.+++.+..+++|+.+.
T Consensus 83 a-------~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~ 119 (343)
T TIGR01761 83 A-------RALLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYL 119 (343)
T ss_pred H-------HHHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEE
Confidence 2 245677777765533335677788888888777654
No 197
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=98.01 E-value=3.8e-05 Score=80.39 Aligned_cols=112 Identities=17% Similarity=0.184 Sum_probs=79.0
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCC-Cc-------------EEEEcCCccchhHHHhC--C---Ccc-CCCHHHHh---
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAG-CD-------------VTVWNRTKSKCDPLISL--G---AKY-QPSPDEVA--- 125 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g-~~-------------V~~~d~~~~~~~~~~~~--g---~~~-~~~~~~~~--- 125 (359)
.++++|+|||+|.||+.+++.|.... .+ |.++|+++++.+.+.+. + +.. +.+.+++.
T Consensus 567 ~~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v 646 (1042)
T PLN02819 567 KKSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYV 646 (1042)
T ss_pred ccCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhh
Confidence 35679999999999999999998753 33 88999998777766542 3 222 44655554
Q ss_pred hcCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213 126 ASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (359)
Q Consensus 126 ~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (359)
+++|+|++|+|...+ ..++ ...++.|..+++.+ .......++.+..++.|+.++.
T Consensus 647 ~~~DaVIsalP~~~H-~~VA------kaAieaGkHvv~ek-y~~~e~~~L~e~Ak~AGV~~m~ 701 (1042)
T PLN02819 647 SQVDVVISLLPASCH-AVVA------KACIELKKHLVTAS-YVSEEMSALDSKAKEAGITILC 701 (1042)
T ss_pred cCCCEEEECCCchhh-HHHH------HHHHHcCCCEEECc-CCHHHHHHHHHHHHHcCCEEEE
Confidence 579999999986433 2232 24566777888776 4455666777777777776654
No 198
>PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A ....
Probab=98.01 E-value=0.00013 Score=54.61 Aligned_cols=91 Identities=16% Similarity=0.116 Sum_probs=72.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccchhhhhcccccccCCCCC--CcchhHHHHHHH
Q 018213 235 GNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAPMYSLKGPSMIESLYPT--AFPLKHQQKDLR 312 (359)
Q Consensus 235 ~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~--~~~~~~~~kd~~ 312 (359)
..++..|++.|.+....++.++|...+|++.|+|..++.+.+...... ...-+.| ++...-..||..
T Consensus 2 ~~AEl~K~~~N~~~a~~iaf~Nel~~lce~~giD~~~V~~~~~~d~ri-----------~~~~~~pg~g~GG~ClpkD~~ 70 (96)
T PF00984_consen 2 EEAELIKYAENAFRATKIAFANELARLCEKLGIDVYEVIEAANTDPRI-----------GPHYLRPGPGFGGSCLPKDPY 70 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHHHHHTSTTT-----------TSSS-S-SSS--SSCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHccCccc-----------ccccCCCCCCCCCcchhhhHH
Confidence 358899999999999999999999999999999999999998864221 1112223 344566899999
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHH
Q 018213 313 LALGLAESVSQSTPIAAAANELYK 336 (359)
Q Consensus 313 ~~~~~a~~~g~~~p~~~~~~~~~~ 336 (359)
.+...+++.|.+.++++++.+.-.
T Consensus 71 ~L~~~~~~~g~~~~ll~~~~~~N~ 94 (96)
T PF00984_consen 71 ALIYLAKELGYPPQLLEAVININE 94 (96)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHhcC
Confidence 999999999999999988877654
No 199
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=98.01 E-value=3.3e-05 Score=67.64 Aligned_cols=109 Identities=19% Similarity=0.232 Sum_probs=70.0
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCCcEE-EEcC----------CccchhHHHhC-C-------CccCCCHHHHh-hcC
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVT-VWNR----------TKSKCDPLISL-G-------AKYQPSPDEVA-ASC 128 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~-~~d~----------~~~~~~~~~~~-g-------~~~~~~~~~~~-~~a 128 (359)
+++++|+|.|+|++|+.+++.|.++|.+|+ +.|. +.+.+....+. | .... +.++++ .+|
T Consensus 29 l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~-~~~~i~~~~~ 107 (227)
T cd01076 29 LAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERI-TNEELLELDC 107 (227)
T ss_pred ccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceec-CCccceeecc
Confidence 778999999999999999999999999988 5565 33333222222 2 1111 223332 378
Q ss_pred CEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213 129 DVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (359)
Q Consensus 129 Divi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (359)
||++-|.+...-+.+.+ +.++ =.+|+-.++. |.+ ....+.|.++|+.+++
T Consensus 108 Dvlip~a~~~~i~~~~~-------~~l~-a~~I~egAN~-~~t-~~a~~~L~~rGi~~~P 157 (227)
T cd01076 108 DILIPAALENQITADNA-------DRIK-AKIIVEAANG-PTT-PEADEILHERGVLVVP 157 (227)
T ss_pred cEEEecCccCccCHHHH-------hhce-eeEEEeCCCC-CCC-HHHHHHHHHCCCEEEC
Confidence 99999986554444444 2332 2344444444 444 5677888899988875
No 200
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.00 E-value=0.0012 Score=61.19 Aligned_cols=265 Identities=16% Similarity=0.208 Sum_probs=154.4
Q ss_pred CeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHh----C-C----------------C----ccCCCHHHHh
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLIS----L-G----------------A----KYQPSPDEVA 125 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~----~-g----------------~----~~~~~~~~~~ 125 (359)
.+|.|+|+|..+-.+|..+...+. +|-+++|...+.+.+.+ . + - ....+.+++.
T Consensus 2 ~~VLI~GtGPvAiQLAv~lk~~~~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~~~~~~i~ 81 (429)
T PF10100_consen 2 GNVLIVGTGPVAIQLAVILKKHGNCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVFQDYEEIE 81 (429)
T ss_pred CceEEEcCCHHHHHHHHHHHhccCceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhhcCHHHhc
Confidence 468999999999999999998764 68889996655544322 1 1 0 2355777888
Q ss_pred hcCCEEEEeeCChhHHHHHhcccccccc-cCCCCCEEEeccC--CChHHHHHHHHHHHhcCCeeec-------CCCCCCC
Q 018213 126 ASCDVTFAMLADPESAMDVACGKHGAAS-GMGPGKGYVDVST--VDGDTSKLINGHIKATGASFLE-------APVSGSK 195 (359)
Q Consensus 126 ~~aDivi~~~p~~~~~~~~~~~~~~~~~-~l~~~~~vi~~s~--~~~~~~~~l~~~l~~~~~~~~~-------~~~~~~~ 195 (359)
.+=|.+|+||| .++...++ +++-. .++.=+.+|-+|. |+-...+.+...+.. .+.++. ......+
T Consensus 82 g~WdtlILavt-aDAY~~VL---~ql~~~~L~~vk~iVLvSPtfGS~~lv~~~l~~~~~-~~EVISFStY~gdTr~~d~~ 156 (429)
T PF10100_consen 82 GEWDTLILAVT-ADAYLDVL---QQLPWEVLKRVKSIVLVSPTFGSHLLVKGFLNDLGP-DAEVISFSTYYGDTRWSDGE 156 (429)
T ss_pred ccccEEEEEec-hHHHHHHH---HhcCHHHHhhCCEEEEECcccchHHHHHHHHHhcCC-CceEEEeecccccceeccCC
Confidence 88899999997 66777777 44432 2333233443333 333333333333321 223332 1111111
Q ss_pred cc-----ccCCceEEEec--CCHHHHHHHHHHHHHhCCCeEEeCccChHHHHHHH-----------------H-------
Q 018213 196 KP-----AEDGQLIFLAA--GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLV-----------------V------- 244 (359)
Q Consensus 196 ~~-----~~~~~~~~~~~--g~~~~~~~v~~ll~~lg~~~~~~g~~~~~~~~kl~-----------------~------- 244 (359)
+. .....-+++.+ ++....+++..+++.+|..+..+..+-.++...+. .
T Consensus 157 ~~~~vlt~~vK~kiYigSt~~~s~~~~~l~~~~~~~gI~~~~~~~pl~AE~rNislYVHpplfmndfsL~aIF~~~~~~k 236 (429)
T PF10100_consen 157 QPNRVLTTAVKKKIYIGSTHSNSPELDKLCRLLAQLGIQLEVMDNPLEAESRNISLYVHPPLFMNDFSLNAIFEEDGVPK 236 (429)
T ss_pred CcceehhhhhhceEEEEeCCCCChHHHHHHHHHHHcCCeEEEeCChHhhhhcccceecCChHhhChhhHHHHhCCCCCcc
Confidence 11 00011122222 25667789999999999887777664434333211 1
Q ss_pred ------------HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcc-------ccchhhhhc---------------c
Q 018213 245 ------------NMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGA-------ISAPMYSLK---------------G 290 (359)
Q Consensus 245 ------------n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~-------~~s~~~~~~---------------~ 290 (359)
..++.-|.....|.+.+..+.|+++=.+.+.+.... ....-.+.+ .
T Consensus 237 YvYKL~PEGPIT~~~I~~M~~lw~Ei~~i~~~l~~~~~NLLkFm~ddNYPV~~eslsr~~Ie~F~~l~~i~QEYLLYVRY 316 (429)
T PF10100_consen 237 YVYKLFPEGPITPTLIRDMVQLWKEIMEILNKLGIEPFNLLKFMNDDNYPVRPESLSRDDIESFEELPAIHQEYLLYVRY 316 (429)
T ss_pred eEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhccCCCCCChhhCCHHHHhhhhcCChHHhhHHHHHHh
Confidence 235556788999999999999998877777776520 100000000 0
Q ss_pred cccc---------cCCCC--------CC-------cchhH----HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHC
Q 018213 291 PSMI---------ESLYP--------TA-------FPLKH----QQKDLRLALGLAESVSQSTPIAAAANELYKVAKSH 341 (359)
Q Consensus 291 ~~~~---------~~~~~--------~~-------~~~~~----~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~ 341 (359)
..++ +|.|. .. ..++. -..-+..+..+++.+|+++|+++.+.+.|+.....
T Consensus 317 tsiLIDPFS~PD~~GrYFDFSAVp~~~i~~d~~g~w~iPRmP~EDy~r~~~i~~la~~l~v~~Ptid~~l~~Ye~~l~~ 395 (429)
T PF10100_consen 317 TSILIDPFSEPDEQGRYFDFSAVPYKKIFKDEEGLWDIPRMPKEDYYRLKIIQGLARALNVSCPTIDRFLARYESKLSQ 395 (429)
T ss_pred hhheeCCCCCCCCCCCcccccccceeeeeecCCCcccCCCCCHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHH
Confidence 0111 11110 00 01222 12336888999999999999999999999888764
No 201
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=97.99 E-value=3.6e-05 Score=56.64 Aligned_cols=65 Identities=20% Similarity=0.307 Sum_probs=51.1
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHC-CCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcc
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKA-GCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG 147 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~-g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~ 147 (359)
+.+++++|+|+|.+|+.++..+... +.+|.+||| |+++.+++.+..+.+
T Consensus 21 ~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r--------------------------di~i~~~~~~~~~~~---- 70 (86)
T cd05191 21 LKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR--------------------------DILVTATPAGVPVLE---- 70 (86)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC--------------------------CEEEEcCCCCCCchH----
Confidence 5668999999999999999999998 578999988 999999975433322
Q ss_pred cccccccCCCCCEEEecc
Q 018213 148 KHGAASGMGPGKGYVDVS 165 (359)
Q Consensus 148 ~~~~~~~l~~~~~vi~~s 165 (359)
+....++++.++++++
T Consensus 71 --~~~~~~~~~~~v~~~a 86 (86)
T cd05191 71 --EATAKINEGAVVIDLA 86 (86)
T ss_pred --HHHHhcCCCCEEEecC
Confidence 1134567888888763
No 202
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=97.99 E-value=3.1e-05 Score=63.57 Aligned_cols=79 Identities=24% Similarity=0.353 Sum_probs=56.4
Q ss_pred cCCCCeEEEEcCCh-hhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhc
Q 018213 68 DELPGRIGFLGMGI-MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 146 (359)
Q Consensus 68 ~~~~~~igiiG~G~-iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~ 146 (359)
+++++++.|||-+. +|+.++..|...|..|+.++.+. .++++.+++|||||.+++.+.. +
T Consensus 33 ~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T--------------~~l~~~~~~ADIVVsa~G~~~~----i- 93 (160)
T PF02882_consen 33 DLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT--------------KNLQEITRRADIVVSAVGKPNL----I- 93 (160)
T ss_dssp STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS--------------SSHHHHHTTSSEEEE-SSSTT-----B-
T ss_pred CCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC--------------CcccceeeeccEEeeeeccccc----c-
Confidence 38889999999975 99999999999999999987653 2567788999999999976533 3
Q ss_pred ccccccccCCCCCEEEeccCCCh
Q 018213 147 GKHGAASGMGPGKGYVDVSTVDG 169 (359)
Q Consensus 147 ~~~~~~~~l~~~~~vi~~s~~~~ 169 (359)
. .+++++|+++||++....
T Consensus 94 -~---~~~ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 94 -K---ADWIKPGAVVIDVGINYV 112 (160)
T ss_dssp -----GGGS-TTEEEEE--CEEE
T ss_pred -c---cccccCCcEEEecCCccc
Confidence 1 235899999999976544
No 203
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.98 E-value=2.1e-05 Score=61.94 Aligned_cols=89 Identities=20% Similarity=0.310 Sum_probs=56.9
Q ss_pred eEEEEc-CChhhHHHHHHHHHCC-Cc-EEEEcCCccchhHHHhC--------CCccCCCHHHHhhcCCEEEEeeCChhHH
Q 018213 73 RIGFLG-MGIMGTPMAQNLLKAG-CD-VTVWNRTKSKCDPLISL--------GAKYQPSPDEVAASCDVTFAMLADPESA 141 (359)
Q Consensus 73 ~igiiG-~G~iG~~ia~~l~~~g-~~-V~~~d~~~~~~~~~~~~--------g~~~~~~~~~~~~~aDivi~~~p~~~~~ 141 (359)
||+||| +|.+|+.+.+.|.+.- ++ +.+++++.+.-+.+... .....+...+.+.++|+|++|+| ....
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~-~~~~ 79 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALP-HGAS 79 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SC-HHHH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCc-hhHH
Confidence 699999 8999999999999843 34 44566655222223221 11122222344589999999997 5555
Q ss_pred HHHhcccccccccCCCCCEEEeccCCC
Q 018213 142 MDVACGKHGAASGMGPGKGYVDVSTVD 168 (359)
Q Consensus 142 ~~~~~~~~~~~~~l~~~~~vi~~s~~~ 168 (359)
.... +.+ +++|..+||.|...
T Consensus 80 ~~~~---~~~---~~~g~~ViD~s~~~ 100 (121)
T PF01118_consen 80 KELA---PKL---LKAGIKVIDLSGDF 100 (121)
T ss_dssp HHHH---HHH---HHTTSEEEESSSTT
T ss_pred HHHH---HHH---hhCCcEEEeCCHHH
Confidence 5555 333 57888999997654
No 204
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.98 E-value=5.4e-05 Score=65.81 Aligned_cols=110 Identities=13% Similarity=0.102 Sum_probs=68.8
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCCc-EEEEcCCc----------cchhHHHhC-CCccCC-----CHHHHh-hcCCE
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGCD-VTVWNRTK----------SKCDPLISL-GAKYQP-----SPDEVA-ASCDV 130 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~-V~~~d~~~----------~~~~~~~~~-g~~~~~-----~~~~~~-~~aDi 130 (359)
+.+++|+|.|+|++|+.+|+.|.+.|.. |.+.|.+. +..+...+. ++.... +.++++ .+|||
T Consensus 21 l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~DV 100 (217)
T cd05211 21 LEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDVDI 100 (217)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceeccccE
Confidence 7789999999999999999999999885 55677766 443333322 122111 123332 37999
Q ss_pred EEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213 131 TFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (359)
Q Consensus 131 vi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (359)
++-|.+.+.-+.+.. ..++ =.+|+-.++++. +. ...+.|.++|+.+++
T Consensus 101 lipaA~~~~i~~~~a-------~~l~-a~~V~e~AN~p~-t~-~a~~~L~~~Gi~v~P 148 (217)
T cd05211 101 FAPCALGNVIDLENA-------KKLK-AKVVAEGANNPT-TD-EALRILHERGIVVAP 148 (217)
T ss_pred EeeccccCccChhhH-------hhcC-ccEEEeCCCCCC-CH-HHHHHHHHCCcEEEC
Confidence 999986543332222 3333 234554444443 33 567788888877765
No 205
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=97.95 E-value=4e-05 Score=70.78 Aligned_cols=66 Identities=24% Similarity=0.231 Sum_probs=49.0
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhH--H---Hh---CC----CccCCCHHHHhhcCCEEEEee
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDP--L---IS---LG----AKYQPSPDEVAASCDVTFAML 135 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~--~---~~---~g----~~~~~~~~~~~~~aDivi~~~ 135 (359)
.+.+||+|||+|.||..+|..++..|+ +|.++|++++..+. + .. .+ +....+. +.+++||+||++.
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta 82 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA 82 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence 455899999999999999999998895 89999998875321 1 00 11 2223465 4678999999976
No 206
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.94 E-value=4.3e-05 Score=68.53 Aligned_cols=78 Identities=26% Similarity=0.343 Sum_probs=63.9
Q ss_pred ccCCCCeEEEEcCCh-hhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHh
Q 018213 67 ADELPGRIGFLGMGI-MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA 145 (359)
Q Consensus 67 ~~~~~~~igiiG~G~-iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~ 145 (359)
.++.++++.|||-|. +|+.++..|...|..|+++.+.. .++.+.++++||||.+++.+.. +
T Consensus 155 i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T--------------~~l~~~~~~ADIvi~avG~p~~----v 216 (285)
T PRK10792 155 IDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT--------------KNLRHHVRNADLLVVAVGKPGF----I 216 (285)
T ss_pred CCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC--------------CCHHHHHhhCCEEEEcCCCccc----c
Confidence 347899999999998 99999999999999999997642 3677889999999999976542 3
Q ss_pred cccccccccCCCCCEEEeccCC
Q 018213 146 CGKHGAASGMGPGKGYVDVSTV 167 (359)
Q Consensus 146 ~~~~~~~~~l~~~~~vi~~s~~ 167 (359)
. .+.+++|+++||++..
T Consensus 217 ---~--~~~vk~gavVIDvGin 233 (285)
T PRK10792 217 ---P--GEWIKPGAIVIDVGIN 233 (285)
T ss_pred ---c--HHHcCCCcEEEEcccc
Confidence 1 1457899999999743
No 207
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=97.93 E-value=6.6e-05 Score=65.79 Aligned_cols=107 Identities=17% Similarity=0.176 Sum_probs=71.5
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCC---cEEEEcCC----ccch-------hHHHhC-CCccC-CCHHHHhhcCCEEE
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGC---DVTVWNRT----KSKC-------DPLISL-GAKYQ-PSPDEVAASCDVTF 132 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~---~V~~~d~~----~~~~-------~~~~~~-g~~~~-~~~~~~~~~aDivi 132 (359)
+++++|.|+|+|.+|+.++..|...|. +|+++||+ .++. ..+.+. +.... .++.+.++++|+||
T Consensus 23 l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~dvlI 102 (226)
T cd05311 23 IEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADVFI 102 (226)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCCEEE
Confidence 677899999999999999999999997 49999998 3432 222221 11111 36767888999999
Q ss_pred EeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCe
Q 018213 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGAS 185 (359)
Q Consensus 133 ~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~ 185 (359)
-++|... + +++....|.++.++++.+ .|.. +.+.+...+.|..
T Consensus 103 gaT~~G~-----~--~~~~l~~m~~~~ivf~ls--nP~~-e~~~~~A~~~ga~ 145 (226)
T cd05311 103 GVSRPGV-----V--KKEMIKKMAKDPIVFALA--NPVP-EIWPEEAKEAGAD 145 (226)
T ss_pred eCCCCCC-----C--CHHHHHhhCCCCEEEEeC--CCCC-cCCHHHHHHcCCc
Confidence 9987322 2 233445666788888887 3333 3355555555654
No 208
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=97.93 E-value=7.6e-05 Score=60.01 Aligned_cols=78 Identities=19% Similarity=0.259 Sum_probs=63.5
Q ss_pred cCCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhc
Q 018213 68 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 146 (359)
Q Consensus 68 ~~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~ 146 (359)
++++++|.|+|- ...|..++..|.+.|.+|+.++++. .++++.+++||||+.+++.++ ++
T Consensus 25 ~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t--------------~~l~~~v~~ADIVvsAtg~~~----~i- 85 (140)
T cd05212 25 RLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT--------------IQLQSKVHDADVVVVGSPKPE----KV- 85 (140)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC--------------cCHHHHHhhCCEEEEecCCCC----cc-
Confidence 378899999997 6689999999999999999998643 256778899999999997652 34
Q ss_pred ccccccccCCCCCEEEeccCCC
Q 018213 147 GKHGAASGMGPGKGYVDVSTVD 168 (359)
Q Consensus 147 ~~~~~~~~l~~~~~vi~~s~~~ 168 (359)
+ .+++++|++++|++...
T Consensus 86 -~---~~~ikpGa~Vidvg~~~ 103 (140)
T cd05212 86 -P---TEWIKPGATVINCSPTK 103 (140)
T ss_pred -C---HHHcCCCCEEEEcCCCc
Confidence 1 24689999999987655
No 209
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=97.93 E-value=1.4e-05 Score=72.39 Aligned_cols=94 Identities=18% Similarity=0.145 Sum_probs=75.3
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhccc
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK 148 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~ 148 (359)
+.++++.|.|+|..|+.+|.+++..|.+|+++..+|-+.-+..=.|..+. ..+|+...+||+|.++- .++++ .
T Consensus 207 iaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~-~m~~Aa~~gDifiT~TG----nkdVi--~ 279 (420)
T COG0499 207 LAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAAKTGDIFVTATG----NKDVI--R 279 (420)
T ss_pred ecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEE-EhHHhhhcCCEEEEccC----CcCcc--C
Confidence 67899999999999999999999999999999988755444333466655 78899999999998884 24455 4
Q ss_pred ccccccCCCCCEEEeccCCCh
Q 018213 149 HGAASGMGPGKGYVDVSTVDG 169 (359)
Q Consensus 149 ~~~~~~l~~~~~vi~~s~~~~ 169 (359)
.+.+..||+|+++.|.+.-..
T Consensus 280 ~eh~~~MkDgaIl~N~GHFd~ 300 (420)
T COG0499 280 KEHFEKMKDGAILANAGHFDV 300 (420)
T ss_pred HHHHHhccCCeEEecccccce
Confidence 556678999999999875543
No 210
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=97.93 E-value=1.2e-05 Score=74.17 Aligned_cols=95 Identities=17% Similarity=0.256 Sum_probs=60.8
Q ss_pred CCCeEEEEcCChhhHHHHHHHHH-CC-CcEEEEcCCccchhHHHhC----C--CccCCCHHHHhhcCCEEEEeeCChhHH
Q 018213 70 LPGRIGFLGMGIMGTPMAQNLLK-AG-CDVTVWNRTKSKCDPLISL----G--AKYQPSPDEVAASCDVTFAMLADPESA 141 (359)
Q Consensus 70 ~~~~igiiG~G~iG~~ia~~l~~-~g-~~V~~~d~~~~~~~~~~~~----g--~~~~~~~~~~~~~aDivi~~~p~~~~~ 141 (359)
...+++|||+|..|...++.+.. ++ -+|.+|+|++++.+.+.+. + +..+++.++++++||||+.|+|.....
T Consensus 127 ~~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~ 206 (313)
T PF02423_consen 127 DARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPA 206 (313)
T ss_dssp T--EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEE
T ss_pred CCceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCC
Confidence 34689999999999999998865 55 4799999999877766542 3 345789999999999999998744311
Q ss_pred HHHhcccccccccCCCCCEEEeccCCChH
Q 018213 142 MDVACGKHGAASGMGPGKGYVDVSTVDGD 170 (359)
Q Consensus 142 ~~~~~~~~~~~~~l~~~~~vi~~s~~~~~ 170 (359)
.++ + ..++++|++|+.++...+.
T Consensus 207 -P~~--~---~~~l~~g~hi~~iGs~~~~ 229 (313)
T PF02423_consen 207 -PVF--D---AEWLKPGTHINAIGSYTPG 229 (313)
T ss_dssp -ESB------GGGS-TT-EEEE-S-SSTT
T ss_pred -ccc--c---HHHcCCCcEEEEecCCCCc
Confidence 444 1 2468899999988876663
No 211
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=97.92 E-value=2.5e-05 Score=75.03 Aligned_cols=66 Identities=14% Similarity=0.206 Sum_probs=50.0
Q ss_pred CeEEEEcCChhhHHHHH--HH----HHCCCcEEEEcCCccchhHHHhC------------CCccCCCHHHHhhcCCEEEE
Q 018213 72 GRIGFLGMGIMGTPMAQ--NL----LKAGCDVTVWNRTKSKCDPLISL------------GAKYQPSPDEVAASCDVTFA 133 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~--~l----~~~g~~V~~~d~~~~~~~~~~~~------------g~~~~~~~~~~~~~aDivi~ 133 (359)
+||+|||.|.+|.+.+. .+ ...|++|.+||+++++.+..... .+..+.++++++++||+|++
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~ 80 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVIN 80 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEE
Confidence 47999999999998665 23 44578999999998765543321 23346688899999999999
Q ss_pred eeCC
Q 018213 134 MLAD 137 (359)
Q Consensus 134 ~~p~ 137 (359)
++|.
T Consensus 81 ai~~ 84 (423)
T cd05297 81 TIQV 84 (423)
T ss_pred eeEe
Confidence 9973
No 212
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.92 E-value=4.1e-05 Score=69.17 Aligned_cols=78 Identities=23% Similarity=0.309 Sum_probs=62.3
Q ss_pred ccCCCCeEEEEcCCh-hhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHh
Q 018213 67 ADELPGRIGFLGMGI-MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA 145 (359)
Q Consensus 67 ~~~~~~~igiiG~G~-iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~ 145 (359)
.+++++++.|||.|. +|+.++..|...|.+|+++++.. .++.+.++++|+||.+++.+. .+
T Consensus 155 i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t--------------~~L~~~~~~aDIvI~AtG~~~----~v 216 (283)
T PRK14192 155 IELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRT--------------QNLPELVKQADIIVGAVGKPE----LI 216 (283)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc--------------hhHHHHhccCCEEEEccCCCC----cC
Confidence 348889999999998 99999999999999999998732 245566789999999997543 33
Q ss_pred cccccccccCCCCCEEEeccCC
Q 018213 146 CGKHGAASGMGPGKGYVDVSTV 167 (359)
Q Consensus 146 ~~~~~~~~~l~~~~~vi~~s~~ 167 (359)
. .+.+++|++++|++-.
T Consensus 217 --~---~~~lk~gavViDvg~n 233 (283)
T PRK14192 217 --K---KDWIKQGAVVVDAGFH 233 (283)
T ss_pred --C---HHHcCCCCEEEEEEEe
Confidence 1 2357899999999644
No 213
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=97.92 E-value=3.2e-05 Score=74.99 Aligned_cols=96 Identities=18% Similarity=0.247 Sum_probs=69.9
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCcc--CC---------------C----------H
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY--QP---------------S----------P 121 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~--~~---------------~----------~ 121 (359)
..+.++.|+|+|.+|...+..+...|..|+++|+++++.+.....|... .+ + +
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~ 241 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELF 241 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHH
Confidence 4457999999999999999999999999999999988777666555432 00 1 2
Q ss_pred HHHhhcCCEEEEee--CChhHHHHHhcccccccccCCCCCEEEeccCC
Q 018213 122 DEVAASCDVTFAML--ADPESAMDVACGKHGAASGMGPGKGYVDVSTV 167 (359)
Q Consensus 122 ~~~~~~aDivi~~~--p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~ 167 (359)
.+.++++|+||.++ |..+ ...++ .++..+.||+|.+|||++..
T Consensus 242 ~e~~~~~DIVI~TalipG~~-aP~Li--t~emv~~MKpGsvIVDlA~d 286 (511)
T TIGR00561 242 AAQAKEVDIIITTALIPGKP-APKLI--TEEMVDSMKAGSVIVDLAAE 286 (511)
T ss_pred HHHhCCCCEEEECcccCCCC-CCeee--hHHHHhhCCCCCEEEEeeeC
Confidence 34467899999888 1110 11233 25556889999999999653
No 214
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.92 E-value=1.8e-05 Score=75.46 Aligned_cols=70 Identities=17% Similarity=0.208 Sum_probs=57.0
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhC-C-Cc--cCCCHHHHhhcCCEEEEeeCCh
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL-G-AK--YQPSPDEVAASCDVTFAMLADP 138 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~-g-~~--~~~~~~~~~~~aDivi~~~p~~ 138 (359)
+.+++|.|||+|.||+.++..|...|. +|++++|+.++.+.+.+. + .. ..+++.+.+.++|+||.|++.+
T Consensus 179 l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~ 253 (414)
T PRK13940 179 ISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVL 253 (414)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCC
Confidence 677899999999999999999999995 799999998887777653 2 22 2345567788999999999754
No 215
>PRK07589 ornithine cyclodeaminase; Validated
Probab=97.91 E-value=2.4e-05 Score=72.72 Aligned_cols=94 Identities=15% Similarity=0.163 Sum_probs=69.4
Q ss_pred CCeEEEEcCChhhHHHHHHHHH-CC-CcEEEEcCCccchhHHHh----CC--CccCCCHHHHhhcCCEEEEeeCChhHHH
Q 018213 71 PGRIGFLGMGIMGTPMAQNLLK-AG-CDVTVWNRTKSKCDPLIS----LG--AKYQPSPDEVAASCDVTFAMLADPESAM 142 (359)
Q Consensus 71 ~~~igiiG~G~iG~~ia~~l~~-~g-~~V~~~d~~~~~~~~~~~----~g--~~~~~~~~~~~~~aDivi~~~p~~~~~~ 142 (359)
-.+++|||+|..+...++.+.. +. -+|.+|+|++++.+.+.+ .+ +..+++.++++++||||+.++|. ....
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S-~~~~ 207 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTAD-KTNA 207 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCC-CCCC
Confidence 3689999999999999887764 33 479999999988766553 23 34568999999999999999963 2222
Q ss_pred HHhcccccccccCCCCCEEEeccCCChH
Q 018213 143 DVACGKHGAASGMGPGKGYVDVSTVDGD 170 (359)
Q Consensus 143 ~~~~~~~~~~~~l~~~~~vi~~s~~~~~ 170 (359)
.++ + .+++++|++|.-+++-.|.
T Consensus 208 Pvl---~--~~~lkpG~hV~aIGs~~p~ 230 (346)
T PRK07589 208 TIL---T--DDMVEPGMHINAVGGDCPG 230 (346)
T ss_pred cee---c--HHHcCCCcEEEecCCCCCC
Confidence 344 1 2467999998877765553
No 216
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=97.89 E-value=8.5e-05 Score=68.49 Aligned_cols=69 Identities=14% Similarity=0.211 Sum_probs=50.3
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCC--cEEEEcCCccchhHHHh----C-----CCccCCCHHHHhhcCCEEEEeeCC
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLIS----L-----GAKYQPSPDEVAASCDVTFAMLAD 137 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~--~V~~~d~~~~~~~~~~~----~-----g~~~~~~~~~~~~~aDivi~~~p~ 137 (359)
..++||+|||+|.+|..+|..+...|. ++.++|++.++.+.... . ......+..+.+++||+||++.-.
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag~ 83 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAGA 83 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecCC
Confidence 456899999999999999999998886 79999998776443221 0 112222333557999999997743
No 217
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=97.88 E-value=9e-05 Score=68.21 Aligned_cols=66 Identities=15% Similarity=0.245 Sum_probs=49.6
Q ss_pred CeEEEEcCChhhHHHHHHHHHCC--CcEEEEcCCccchhHHHhC--------C--Ccc-CCCHHHHhhcCCEEEEeeCCh
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKAG--CDVTVWNRTKSKCDPLISL--------G--AKY-QPSPDEVAASCDVTFAMLADP 138 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~g--~~V~~~d~~~~~~~~~~~~--------g--~~~-~~~~~~~~~~aDivi~~~p~~ 138 (359)
+||+|||+|.+|+.+|..|+..| .+|.++|+++++.+..... + ... ..+. +.+++||+||++...+
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~-~~l~~aDIVIitag~~ 79 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDY-SDCKDADIVVITAGAP 79 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCH-HHhCCCCEEEEccCCC
Confidence 37999999999999999999999 5899999988765543321 1 111 2344 4478999999999653
No 218
>PRK04148 hypothetical protein; Provisional
Probab=97.87 E-value=7.5e-05 Score=59.14 Aligned_cols=92 Identities=17% Similarity=0.163 Sum_probs=64.6
Q ss_pred CCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCcc-----CCCHHHHhhcCCEEEEeeCChhHHHHH
Q 018213 70 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY-----QPSPDEVAASCDVTFAMLADPESAMDV 144 (359)
Q Consensus 70 ~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~-----~~~~~~~~~~aDivi~~~p~~~~~~~~ 144 (359)
++++|.+||+| -|..+|..|++.|++|++.|.++..++...+.+... +....++-+++|+|...-| +.++..-
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirp-p~el~~~ 93 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRP-PRDLQPF 93 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCC-CHHHHHH
Confidence 45789999999 999999999999999999999998877766655432 2333466778888888776 4454444
Q ss_pred hcccccccccCCCCCEEEeccC
Q 018213 145 ACGKHGAASGMGPGKGYVDVST 166 (359)
Q Consensus 145 ~~~~~~~~~~l~~~~~vi~~s~ 166 (359)
+ -++......+-+|...+.
T Consensus 94 ~---~~la~~~~~~~~i~~l~~ 112 (134)
T PRK04148 94 I---LELAKKINVPLIIKPLSG 112 (134)
T ss_pred H---HHHHHHcCCCEEEEcCCC
Confidence 4 345455544444444433
No 219
>PRK06199 ornithine cyclodeaminase; Validated
Probab=97.87 E-value=2.4e-05 Score=73.77 Aligned_cols=91 Identities=18% Similarity=0.245 Sum_probs=67.2
Q ss_pred CCeEEEEcCChhhHHHHHHHHH-CC--CcEEEEcCCccchhHHHh----C--C---CccCCCHHHHhhcCCEEEEeeCCh
Q 018213 71 PGRIGFLGMGIMGTPMAQNLLK-AG--CDVTVWNRTKSKCDPLIS----L--G---AKYQPSPDEVAASCDVTFAMLADP 138 (359)
Q Consensus 71 ~~~igiiG~G~iG~~ia~~l~~-~g--~~V~~~d~~~~~~~~~~~----~--g---~~~~~~~~~~~~~aDivi~~~p~~ 138 (359)
-++++|||+|..+...++.+.. +. -+|.+|+|++++.+.+.+ . + +..+++.++++++||||+.|++..
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~ 234 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGE 234 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCC
Confidence 3689999999999999999876 32 379999999988766543 1 2 445789999999999999998643
Q ss_pred h---HHHHHhcccccccccCCCCCEEEeccC
Q 018213 139 E---SAMDVACGKHGAASGMGPGKGYVDVST 166 (359)
Q Consensus 139 ~---~~~~~~~~~~~~~~~l~~~~~vi~~s~ 166 (359)
. ....++ + ..++++|++|+..+.
T Consensus 235 ~~~~s~~Pv~--~---~~~lkpG~hv~~ig~ 260 (379)
T PRK06199 235 TGDPSTYPYV--K---REWVKPGAFLLMPAA 260 (379)
T ss_pred CCCCCcCcEe--c---HHHcCCCcEEecCCc
Confidence 2 223444 1 236789998875433
No 220
>PRK10206 putative oxidoreductase; Provisional
Probab=97.87 E-value=0.00011 Score=68.82 Aligned_cols=108 Identities=15% Similarity=0.135 Sum_probs=70.8
Q ss_pred CeEEEEcCChhhH-HHHHHHHH--CCCcEE-EEcCCccchhHHHhCC-CccCCCHHHHhh--cCCEEEEeeCChhHHHHH
Q 018213 72 GRIGFLGMGIMGT-PMAQNLLK--AGCDVT-VWNRTKSKCDPLISLG-AKYQPSPDEVAA--SCDVTFAMLADPESAMDV 144 (359)
Q Consensus 72 ~~igiiG~G~iG~-~ia~~l~~--~g~~V~-~~d~~~~~~~~~~~~g-~~~~~~~~~~~~--~aDivi~~~p~~~~~~~~ 144 (359)
.||||||+|.++. ..+..+.. .+++|. ++|+++++.+...+.+ +..+++.++++. +.|+|++++|...+.+.+
T Consensus 2 irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~H~~~~ 81 (344)
T PRK10206 2 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFEYA 81 (344)
T ss_pred eEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchHHHHHH
Confidence 5799999999875 34554533 256765 6898875543233333 567789999996 579999999976665555
Q ss_pred hcccccccccCCCCCEEEec--cCCChHHHHHHHHHHHhcCCee
Q 018213 145 ACGKHGAASGMGPGKGYVDV--STVDGDTSKLINGHIKATGASF 186 (359)
Q Consensus 145 ~~~~~~~~~~l~~~~~vi~~--s~~~~~~~~~l~~~l~~~~~~~ 186 (359)
. ..++.|+.|+.- -.....+.+++.+..++.++.+
T Consensus 82 ~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l 118 (344)
T PRK10206 82 K-------RALEAGKNVLVEKPFTPTLAEAKELFALAKSKGLTV 118 (344)
T ss_pred H-------HHHHcCCcEEEecCCcCCHHHHHHHHHHHHHhCCEE
Confidence 4 345556655432 2234566778888887776654
No 221
>PRK06349 homoserine dehydrogenase; Provisional
Probab=97.85 E-value=5.5e-05 Score=72.75 Aligned_cols=111 Identities=19% Similarity=0.312 Sum_probs=71.3
Q ss_pred CCeEEEEcCChhhHHHHHHHHHC--------C--CcE-EEEcCCccchhHHHhCCCccCCCHHHHhh--cCCEEEEeeCC
Q 018213 71 PGRIGFLGMGIMGTPMAQNLLKA--------G--CDV-TVWNRTKSKCDPLISLGAKYQPSPDEVAA--SCDVTFAMLAD 137 (359)
Q Consensus 71 ~~~igiiG~G~iG~~ia~~l~~~--------g--~~V-~~~d~~~~~~~~~~~~g~~~~~~~~~~~~--~aDivi~~~p~ 137 (359)
..+|||+|+|.||+.+++.|.+. | .+| .++++++++.......+...+++.++++. +.|+|+.+++.
T Consensus 3 ~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg~ 82 (426)
T PRK06349 3 PLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMGG 82 (426)
T ss_pred eEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCCC
Confidence 47899999999999999888543 3 343 46788765543222223456778999986 46999999864
Q ss_pred hhHHHHHhcccccccccCCCCCEEEeccCC-ChHHHHHHHHHHHhcCCeee
Q 018213 138 PESAMDVACGKHGAASGMGPGKGYVDVSTV-DGDTSKLINGHIKATGASFL 187 (359)
Q Consensus 138 ~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~-~~~~~~~l~~~l~~~~~~~~ 187 (359)
.......+ ...++.|..|+...-. .....++|.+..+++++.+.
T Consensus 83 ~~~~~~~~------~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~l~ 127 (426)
T PRK06349 83 IEPARELI------LKALEAGKHVVTANKALLAVHGAELFAAAEEKGVDLY 127 (426)
T ss_pred chHHHHHH------HHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCcEE
Confidence 33323333 3557788888844221 12334667777777777543
No 222
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=97.84 E-value=7.8e-05 Score=67.69 Aligned_cols=118 Identities=15% Similarity=0.059 Sum_probs=75.0
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhC-C----CccCC---CHHHHhhcCCEEEEeeCChh
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL-G----AKYQP---SPDEVAASCDVTFAMLADPE 139 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~-g----~~~~~---~~~~~~~~aDivi~~~p~~~ 139 (359)
.+++++.|||+|.+|++++..|...|. +|++++|++++.+.+.+. + +.... +..+.+.++|+||.|+|...
T Consensus 123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g~ 202 (282)
T TIGR01809 123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPADV 202 (282)
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCCC
Confidence 567899999999999999999999997 699999998887776542 1 11122 22345578999999998653
Q ss_pred HHHH-Hhcccccc--cccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213 140 SAMD-VACGKHGA--ASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (359)
Q Consensus 140 ~~~~-~~~~~~~~--~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (359)
.... .+...... ...+.++.+++|+.-.+.. ..+.+..++.|...++
T Consensus 203 ~~~~~~l~~~~~~~~~~~~~~~~~v~D~vY~P~~--T~ll~~A~~~G~~~~~ 252 (282)
T TIGR01809 203 PADYVDLFATVPFLLLKRKSSEGIFLDAAYDPWP--TPLVAIVSAAGWRVIS 252 (282)
T ss_pred CCCHHHhhhhhhhhccccCCCCcEEEEEeeCCCC--CHHHHHHHHCCCEEEC
Confidence 2211 11000000 0123466788888644333 2466666666655544
No 223
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=97.84 E-value=7.9e-05 Score=62.65 Aligned_cols=91 Identities=12% Similarity=0.158 Sum_probs=64.0
Q ss_pred cCCCCeEEEEcCCh-hhHHHHHHHHHCCCcEEEEcCCccchhHHHhC-C--CccC--CC----HHHHhhcCCEEEEeeCC
Q 018213 68 DELPGRIGFLGMGI-MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-G--AKYQ--PS----PDEVAASCDVTFAMLAD 137 (359)
Q Consensus 68 ~~~~~~igiiG~G~-iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-g--~~~~--~~----~~~~~~~aDivi~~~p~ 137 (359)
+++++++.|||-+. +|+.+|..|...|..|+++|.+.-.. +... . -..+ .+ +.+.+++|||||.+++.
T Consensus 59 ~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~--~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG~ 136 (197)
T cd01079 59 RLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQV--FTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVPS 136 (197)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccc--cccccccccccccccchhhHHHHHhhhCCEEEEccCC
Confidence 48899999999855 89999999999999999997543211 0000 0 0001 12 67888999999999987
Q ss_pred hhHHHHHhcccccccccCCCCCEEEeccCCC
Q 018213 138 PESAMDVACGKHGAASGMGPGKGYVDVSTVD 168 (359)
Q Consensus 138 ~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~ 168 (359)
+.-. + . .+.+++|+++||++...
T Consensus 137 ~~~~---i--~---~d~ik~GavVIDVGi~~ 159 (197)
T cd01079 137 PNYK---V--P---TELLKDGAICINFASIK 159 (197)
T ss_pred CCCc---c--C---HHHcCCCcEEEEcCCCc
Confidence 6430 2 1 23578999999997553
No 224
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.83 E-value=8.1e-05 Score=66.75 Aligned_cols=78 Identities=21% Similarity=0.201 Sum_probs=63.2
Q ss_pred ccCCCCeEEEEcCCh-hhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHh
Q 018213 67 ADELPGRIGFLGMGI-MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA 145 (359)
Q Consensus 67 ~~~~~~~igiiG~G~-iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~ 145 (359)
.++.++++.|||.++ +|+.++..|...|..|++++... .++.+..++|||||.++..+. ++
T Consensus 160 i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T--------------~~l~~~~~~ADIvv~AvG~p~----~i 221 (287)
T PRK14176 160 VDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFT--------------DDLKKYTLDADILVVATGVKH----LI 221 (287)
T ss_pred CCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccC--------------CCHHHHHhhCCEEEEccCCcc----cc
Confidence 347899999999998 99999999999999999998532 256778899999999987653 23
Q ss_pred cccccccccCCCCCEEEeccCC
Q 018213 146 CGKHGAASGMGPGKGYVDVSTV 167 (359)
Q Consensus 146 ~~~~~~~~~l~~~~~vi~~s~~ 167 (359)
. ...+++|+++||++..
T Consensus 222 --~---~~~vk~gavVIDvGin 238 (287)
T PRK14176 222 --K---ADMVKEGAVIFDVGIT 238 (287)
T ss_pred --C---HHHcCCCcEEEEeccc
Confidence 1 1357899999999754
No 225
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=97.83 E-value=0.00011 Score=67.13 Aligned_cols=115 Identities=11% Similarity=0.047 Sum_probs=73.5
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCCc-EEEEcCCc---cchhHHHh----CC----CccC--C---CHHHHhhcCCEE
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGCD-VTVWNRTK---SKCDPLIS----LG----AKYQ--P---SPDEVAASCDVT 131 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~-V~~~d~~~---~~~~~~~~----~g----~~~~--~---~~~~~~~~aDiv 131 (359)
++++++.|+|+|.+|++++..|...|.+ |++++|+. ++.+.+.+ .+ +... . +.++.+..+|+|
T Consensus 124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~Dil 203 (289)
T PRK12548 124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDIL 203 (289)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCEE
Confidence 5678899999999999999999999986 99999986 44444332 11 1111 1 223345678999
Q ss_pred EEeeCChhHH--HHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213 132 FAMLADPESA--MDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (359)
Q Consensus 132 i~~~p~~~~~--~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (359)
|.++|....- .... -.-...+.++.+++|+.-.+.. ..+.+..++.|...++
T Consensus 204 INaTp~Gm~~~~~~~~---~~~~~~l~~~~~v~D~vY~P~~--T~ll~~A~~~G~~~~~ 257 (289)
T PRK12548 204 VNATLVGMKPNDGETN---IKDTSVFRKDLVVADTVYNPKK--TKLLEDAEAAGCKTVG 257 (289)
T ss_pred EEeCCCCCCCCCCCCC---CCcHHhcCCCCEEEEecCCCCC--CHHHHHHHHCCCeeeC
Confidence 9999854321 1110 0012346778889998655443 2466666676666554
No 226
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=97.83 E-value=2.4e-05 Score=68.05 Aligned_cols=107 Identities=12% Similarity=0.112 Sum_probs=65.5
Q ss_pred CCeEEEEcCChhhHHHHHHH--HHCCCcEE-EEcCCccchhHHHhCC--CccCCCHHHHhhc--CCEEEEeeCChhH---
Q 018213 71 PGRIGFLGMGIMGTPMAQNL--LKAGCDVT-VWNRTKSKCDPLISLG--AKYQPSPDEVAAS--CDVTFAMLADPES--- 140 (359)
Q Consensus 71 ~~~igiiG~G~iG~~ia~~l--~~~g~~V~-~~d~~~~~~~~~~~~g--~~~~~~~~~~~~~--aDivi~~~p~~~~--- 140 (359)
..+|+|||+|.+|..+++.+ ...|+++. ++|+++++..... .| +...+++++++++ .|++++|+|....
T Consensus 84 ~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i-~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i 162 (213)
T PRK05472 84 TWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKI-GGIPVYHIDELEEVVKENDIEIGILTVPAEAAQEV 162 (213)
T ss_pred CcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEe-CCeEEcCHHHHHHHHHHCCCCEEEEeCCchhHHHH
Confidence 46899999999999999863 35678776 5787765443211 12 2233466777754 9999999986543
Q ss_pred HHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHH
Q 018213 141 AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIK 180 (359)
Q Consensus 141 ~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~ 180 (359)
...+. ...+..-+....+.+++.++..++..++...+.
T Consensus 163 ~~~l~--~~Gi~~il~~~p~~~~v~~~~~v~~~~l~~~l~ 200 (213)
T PRK05472 163 ADRLV--EAGIKGILNFAPVRLSVPEDVIVRNVDLTVELQ 200 (213)
T ss_pred HHHHH--HcCCCEEeecCceeecCCCCCEEEEechHHHHH
Confidence 22222 223333344455566666665555555555543
No 227
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=97.83 E-value=7.3e-05 Score=68.63 Aligned_cols=62 Identities=19% Similarity=0.185 Sum_probs=45.2
Q ss_pred EEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhH----HHhC--------CCccCCCHHHHhhcCCEEEEeeC
Q 018213 74 IGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDP----LISL--------GAKYQPSPDEVAASCDVTFAMLA 136 (359)
Q Consensus 74 igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~----~~~~--------g~~~~~~~~~~~~~aDivi~~~p 136 (359)
|+|||+|.||..+|..++..|. +|+++|++++..+. +.+. .+....+.+ .+++||+||++..
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~-~l~dADiVIit~g 75 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYE-DIAGSDVVVITAG 75 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCHH-HhCCCCEEEEecC
Confidence 6899999999999999998876 99999998764321 1111 112234544 5789999999873
No 228
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=97.83 E-value=1.9e-05 Score=70.32 Aligned_cols=95 Identities=25% Similarity=0.397 Sum_probs=73.0
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC-CCc------cCCCHHHHhhcCCEEEEee--CChh
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-GAK------YQPSPDEVAASCDVTFAML--ADPE 139 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-g~~------~~~~~~~~~~~aDivi~~~--p~~~ 139 (359)
..+-+|.|||.|-+|..-|+.....|.+|++.|++.+++..+... +.+ ....+++.+.++|+||-++ |..
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpga- 244 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGA- 244 (371)
T ss_pred CCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCC-
Confidence 455789999999999999999999999999999998887766553 221 1235678889999999776 432
Q ss_pred HHHHHhcccccccccCCCCCEEEeccC
Q 018213 140 SAMDVACGKHGAASGMGPGKGYVDVST 166 (359)
Q Consensus 140 ~~~~~~~~~~~~~~~l~~~~~vi~~s~ 166 (359)
....++ .++....|+||+++||++-
T Consensus 245 kaPkLv--t~e~vk~MkpGsVivDVAi 269 (371)
T COG0686 245 KAPKLV--TREMVKQMKPGSVIVDVAI 269 (371)
T ss_pred CCceeh--hHHHHHhcCCCcEEEEEEE
Confidence 333333 2677789999999999953
No 229
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=97.82 E-value=3.5e-05 Score=62.34 Aligned_cols=65 Identities=14% Similarity=0.235 Sum_probs=48.1
Q ss_pred CeEEEEcC-ChhhHHHHHHHHHCCC--cEEEEcCCccchhHHHhC----------CCccCCCHHHHhhcCCEEEEeeC
Q 018213 72 GRIGFLGM-GIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLISL----------GAKYQPSPDEVAASCDVTFAMLA 136 (359)
Q Consensus 72 ~~igiiG~-G~iG~~ia~~l~~~g~--~V~~~d~~~~~~~~~~~~----------g~~~~~~~~~~~~~aDivi~~~p 136 (359)
|||+|||+ |++|..+|..|...+. ++.++|+++++.+..... .........+.+++||+|+++.-
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag 78 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAG 78 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecc
Confidence 68999999 9999999999988774 799999986654332210 12223355567789999999873
No 230
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=97.81 E-value=5e-05 Score=66.54 Aligned_cols=73 Identities=19% Similarity=0.366 Sum_probs=53.4
Q ss_pred CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHh--CCCcc---CCC----HHHH-hhcCCEEEEeeCChhHH
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS--LGAKY---QPS----PDEV-AASCDVTFAMLADPESA 141 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~--~g~~~---~~~----~~~~-~~~aDivi~~~p~~~~~ 141 (359)
|++.|||+|.+|..+|+.|.+.|++|++.++++++.++... ..... -.+ ++++ +.++|+++.++. ...+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~-~d~~ 79 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATG-NDEV 79 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeC-CCHH
Confidence 67999999999999999999999999999999988777443 22211 112 2233 457899999985 4444
Q ss_pred HHHh
Q 018213 142 MDVA 145 (359)
Q Consensus 142 ~~~~ 145 (359)
.-++
T Consensus 80 N~i~ 83 (225)
T COG0569 80 NSVL 83 (225)
T ss_pred HHHH
Confidence 4444
No 231
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=97.81 E-value=0.00023 Score=72.64 Aligned_cols=112 Identities=11% Similarity=0.093 Sum_probs=89.7
Q ss_pred EEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec-CCCCCCCccc--------cCC
Q 018213 131 TFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE-APVSGSKKPA--------EDG 201 (359)
Q Consensus 131 vi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~--------~~~ 201 (359)
||+|+| ...+..++ +++.+.++++++|.|+++.+....+++.+.+......|++ ||+.|.+..- ..+
T Consensus 1 vila~P-v~~~~~~~---~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~ 76 (673)
T PRK11861 1 VLLAAP-VAQTGPLL---ARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVG 76 (673)
T ss_pred CEEEcC-HHHHHHHH---HHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCC
Confidence 689998 78889998 8888889999999999999987777776665443356887 9999988554 366
Q ss_pred ceEEEecC---CHHHHHHHHHHHHHhCCCeEEeCccChHHHHHHHHHH
Q 018213 202 QLIFLAAG---DKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNM 246 (359)
Q Consensus 202 ~~~~~~~g---~~~~~~~v~~ll~~lg~~~~~~g~~~~~~~~kl~~n~ 246 (359)
..++++.. +.+.++.+.++++.+|.+++.+.+..+...+.+++..
T Consensus 77 ~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~~~~HD~~~A~iShl 124 (673)
T PRK11861 77 RNVVLCALPENAPDALARVEAMWRAARADVRAMSAEQHDRVFAAVSHL 124 (673)
T ss_pred CeEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHHHHHHHHhhH
Confidence 77777753 6788999999999999999999888777777766654
No 232
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.80 E-value=8.3e-05 Score=66.71 Aligned_cols=79 Identities=23% Similarity=0.300 Sum_probs=62.7
Q ss_pred ccCCCCeEEEEcCC-hhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHh
Q 018213 67 ADELPGRIGFLGMG-IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA 145 (359)
Q Consensus 67 ~~~~~~~igiiG~G-~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~ 145 (359)
.++.+++|.|||-| .+|+.+|..|...|..|+++.... .++.+.+++||+||.+++.+.- +
T Consensus 153 i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t--------------~~l~~~~~~ADIvV~AvG~p~~----i 214 (285)
T PRK14191 153 IEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT--------------KDLSFYTQNADIVCVGVGKPDL----I 214 (285)
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc--------------HHHHHHHHhCCEEEEecCCCCc----C
Confidence 34789999999999 899999999999999999986432 2456788999999999976542 3
Q ss_pred cccccccccCCCCCEEEeccCCC
Q 018213 146 CGKHGAASGMGPGKGYVDVSTVD 168 (359)
Q Consensus 146 ~~~~~~~~~l~~~~~vi~~s~~~ 168 (359)
. ...+++|+++||++...
T Consensus 215 --~---~~~vk~GavVIDvGi~~ 232 (285)
T PRK14191 215 --K---ASMVKKGAVVVDIGINR 232 (285)
T ss_pred --C---HHHcCCCcEEEEeeccc
Confidence 1 13468999999997543
No 233
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=97.78 E-value=0.00014 Score=65.77 Aligned_cols=93 Identities=15% Similarity=0.175 Sum_probs=64.5
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHC-CCcEE-EEcCCccch--hHHHhCCCcc-CCCHHHHhh-----cCCEEEEeeCCh
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKA-GCDVT-VWNRTKSKC--DPLISLGAKY-QPSPDEVAA-----SCDVTFAMLADP 138 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~-g~~V~-~~d~~~~~~--~~~~~~g~~~-~~~~~~~~~-----~aDivi~~~p~~ 138 (359)
+++.+|||||+|+||+.+...+.+. +.++. ++|++++.. +...+.|+.. +++.+++++ +.|+|++++|..
T Consensus 2 m~klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~ 81 (302)
T PRK08300 2 MSKLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAG 81 (302)
T ss_pred CCCCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHH
Confidence 3458899999999999988877754 46655 678877532 3334457765 468899885 478899999754
Q ss_pred hHHHHHhcccccccccCCCCCEEEeccCCC
Q 018213 139 ESAMDVACGKHGAASGMGPGKGYVDVSTVD 168 (359)
Q Consensus 139 ~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~ 168 (359)
.+.+... ...+.|..+||.+...
T Consensus 82 ~H~e~a~-------~a~eaGk~VID~sPA~ 104 (302)
T PRK08300 82 AHVRHAA-------KLREAGIRAIDLTPAA 104 (302)
T ss_pred HHHHHHH-------HHHHcCCeEEECCccc
Confidence 4433332 2356788898886543
No 234
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=97.76 E-value=5.6e-05 Score=73.58 Aligned_cols=96 Identities=20% Similarity=0.306 Sum_probs=69.9
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccC--CC---------------HH---------
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ--PS---------------PD--------- 122 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~--~~---------------~~--------- 122 (359)
..+.+|.|+|+|.+|...+..++..|.+|+++|+++++.+...+.|.+.. +. .+
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~ 242 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALF 242 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHH
Confidence 45789999999999999999999999999999999988887777776521 11 01
Q ss_pred -HHhhcCCEEEEeeCChhH-HHHHhcccccccccCCCCCEEEeccC
Q 018213 123 -EVAASCDVTFAMLADPES-AMDVACGKHGAASGMGPGKGYVDVST 166 (359)
Q Consensus 123 -~~~~~aDivi~~~p~~~~-~~~~~~~~~~~~~~l~~~~~vi~~s~ 166 (359)
+.++.+|+||.|+..+.. ...++ .++..+.|++|.+|++++-
T Consensus 243 ~~~~~gaDVVIetag~pg~~aP~li--t~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 243 AEQAKEVDIIITTALIPGKPAPKLI--TAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HhccCCCCEEEECCCCCcccCcchH--HHHHHHhcCCCCEEEEEcc
Confidence 112469999999853221 11121 1444578999999999975
No 235
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=97.75 E-value=0.00016 Score=65.22 Aligned_cols=89 Identities=19% Similarity=0.239 Sum_probs=62.2
Q ss_pred CeEEEEcCChhhHHHHHHHHH-CCCcEE-EEcCCccch--hHHHhCCCcc-CCCHHHHhh--cCCEEEEeeCChhHHHHH
Q 018213 72 GRIGFLGMGIMGTPMAQNLLK-AGCDVT-VWNRTKSKC--DPLISLGAKY-QPSPDEVAA--SCDVTFAMLADPESAMDV 144 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~-~g~~V~-~~d~~~~~~--~~~~~~g~~~-~~~~~~~~~--~aDivi~~~p~~~~~~~~ 144 (359)
++|||||+|+||+.++..+.. .++++. ++++++++. +...+.|+.. +.+.++++. +.|+|++++|...+.+..
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~e~a 81 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHARHA 81 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHHHHH
Confidence 579999999999999877765 356665 578887653 3334457654 457888885 478899999866554444
Q ss_pred hcccccccccCCCCCEEEeccCC
Q 018213 145 ACGKHGAASGMGPGKGYVDVSTV 167 (359)
Q Consensus 145 ~~~~~~~~~~l~~~~~vi~~s~~ 167 (359)
. ..+..|..+++.+..
T Consensus 82 ~-------~al~aGk~VIdekPa 97 (285)
T TIGR03215 82 R-------LLAELGKIVIDLTPA 97 (285)
T ss_pred H-------HHHHcCCEEEECCcc
Confidence 3 345678888877543
No 236
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=97.74 E-value=0.00025 Score=68.73 Aligned_cols=110 Identities=18% Similarity=0.247 Sum_probs=79.7
Q ss_pred CCCCeEEEEcC----ChhhHHHHHHHHHCCC--cEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHH
Q 018213 69 ELPGRIGFLGM----GIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAM 142 (359)
Q Consensus 69 ~~~~~igiiG~----G~iG~~ia~~l~~~g~--~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~ 142 (359)
.+.++|+|||. |++|..+.+.|.+.|+ +|+.+++....+ .|+..+.+++|+-...|++++++| ++.+.
T Consensus 5 ~~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~i-----~G~~~~~sl~~lp~~~Dlavi~vp-~~~~~ 78 (447)
T TIGR02717 5 FNPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEI-----LGVKAYPSVLEIPDPVDLAVIVVP-AKYVP 78 (447)
T ss_pred cCCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCcc-----CCccccCCHHHCCCCCCEEEEecC-HHHHH
Confidence 45688999999 8899999999999998 576666654322 378888899998878899999997 77778
Q ss_pred HHhcccccccccCCCCCEEEeccCCCh-------HHHHHHHHHHHhcCCeeecC
Q 018213 143 DVACGKHGAASGMGPGKGYVDVSTVDG-------DTSKLINGHIKATGASFLEA 189 (359)
Q Consensus 143 ~~~~~~~~~~~~l~~~~~vi~~s~~~~-------~~~~~l~~~l~~~~~~~~~~ 189 (359)
.++ ++..+. .-+.++|- +.+.. ...+++.+..++.|+++++.
T Consensus 79 ~~l---~e~~~~-gv~~~vi~-s~gf~e~g~~g~~~~~~l~~~a~~~girvlGP 127 (447)
T TIGR02717 79 QVV---EECGEK-GVKGAVVI-TAGFKEVGEEGAELEQELVEIARKYGMRLLGP 127 (447)
T ss_pred HHH---HHHHhc-CCCEEEEE-CCCccccCcchHHHHHHHHHHHHHcCCEEEec
Confidence 887 555442 23333332 33322 23567888888888888763
No 237
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=97.74 E-value=5.8e-05 Score=71.90 Aligned_cols=107 Identities=27% Similarity=0.339 Sum_probs=67.6
Q ss_pred EEEEcCChhhHHHHHHHHHCC-C-cEEEEcCCccchhHHHhC----CCc-----c--CCCHHHHhhcCCEEEEeeCChhH
Q 018213 74 IGFLGMGIMGTPMAQNLLKAG-C-DVTVWNRTKSKCDPLISL----GAK-----Y--QPSPDEVAASCDVTFAMLADPES 140 (359)
Q Consensus 74 igiiG~G~iG~~ia~~l~~~g-~-~V~~~d~~~~~~~~~~~~----g~~-----~--~~~~~~~~~~aDivi~~~p~~~~ 140 (359)
|.|+|+|.+|+.+++.|.+.+ + +|++.||+.++.+.+.+. .+. . ..++.++++++|+||.|+|.. .
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~-~ 79 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF-F 79 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG-G
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc-h
Confidence 789999999999999999876 4 899999999887776542 111 1 123567889999999999733 4
Q ss_pred HHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213 141 AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (359)
Q Consensus 141 ~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (359)
...++ ...+..|...||++- .......+.+..++.|+.++.
T Consensus 80 ~~~v~------~~~i~~g~~yvD~~~-~~~~~~~l~~~a~~~g~~~l~ 120 (386)
T PF03435_consen 80 GEPVA------RACIEAGVHYVDTSY-VTEEMLALDEEAKEAGVTALP 120 (386)
T ss_dssp HHHHH------HHHHHHT-EEEESS--HHHHHHHCHHHHHHTTSEEE-
T ss_pred hHHHH------HHHHHhCCCeeccch-hHHHHHHHHHHHHhhCCEEEe
Confidence 44444 233556777887322 233344555555556665543
No 238
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=97.72 E-value=0.00012 Score=65.81 Aligned_cols=62 Identities=18% Similarity=0.313 Sum_probs=48.1
Q ss_pred EEEEcC-ChhhHHHHHHHHHCC----CcEEEEcCCccchhHHHh-----------CCCccCCCHHHHhhcCCEEEEee
Q 018213 74 IGFLGM-GIMGTPMAQNLLKAG----CDVTVWNRTKSKCDPLIS-----------LGAKYQPSPDEVAASCDVTFAML 135 (359)
Q Consensus 74 igiiG~-G~iG~~ia~~l~~~g----~~V~~~d~~~~~~~~~~~-----------~g~~~~~~~~~~~~~aDivi~~~ 135 (359)
|+|||+ |.+|..++..|...| .+|.++|+++++.+.... ..+...+++.+.+++||+|+++.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~ 78 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITA 78 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECC
Confidence 589999 999999999999888 689999998866543221 12233456678889999999965
No 239
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=97.72 E-value=5.6e-05 Score=62.32 Aligned_cols=65 Identities=23% Similarity=0.247 Sum_probs=48.7
Q ss_pred CeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC-----CCccCCCHHHHhhcCCEEEEeeC
Q 018213 72 GRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-----GAKYQPSPDEVAASCDVTFAMLA 136 (359)
Q Consensus 72 ~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-----g~~~~~~~~~~~~~aDivi~~~p 136 (359)
|||+|||+ |.+|+.+++.+...||+|+.+-|++.+....... .+.-.+++.+.+..-|+||.+..
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~ 71 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFG 71 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEecc
Confidence 78999997 9999999999999999999999999876543111 11112233456677888888773
No 240
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=97.72 E-value=0.00014 Score=56.90 Aligned_cols=103 Identities=17% Similarity=0.187 Sum_probs=65.1
Q ss_pred cCChhhHHHHHHHHHC----CCcEE-EEcCC--ccchhHHHhCCCccCCCHHHHhh--cCCEEEEeeCChhHHHHHhccc
Q 018213 78 GMGIMGTPMAQNLLKA----GCDVT-VWNRT--KSKCDPLISLGAKYQPSPDEVAA--SCDVTFAMLADPESAMDVACGK 148 (359)
Q Consensus 78 G~G~iG~~ia~~l~~~----g~~V~-~~d~~--~~~~~~~~~~g~~~~~~~~~~~~--~aDivi~~~p~~~~~~~~~~~~ 148 (359)
|+|+||+.+++.|... +++|. +++|+ ..........+.....++++++. ..|+||-|.+ ++.....+
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~-~~~~~~~~--- 76 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTS-SEAVAEYY--- 76 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SS-CHHHHHHH---
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCC-chHHHHHH---
Confidence 8999999999999876 45654 57777 11111111224566779999988 8999999975 55555554
Q ss_pred ccccccCCCCCEEEeccCCChH---HHHHHHHHHHhcCCeee
Q 018213 149 HGAASGMGPGKGYVDVSTVDGD---TSKLINGHIKATGASFL 187 (359)
Q Consensus 149 ~~~~~~l~~~~~vi~~s~~~~~---~~~~l~~~l~~~~~~~~ 187 (359)
...++.|..||..+.+... ..++|.+..++.|.++.
T Consensus 77 ---~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~~~~ 115 (117)
T PF03447_consen 77 ---EKALERGKHVVTANKGALADEALYEELREAARKNGVRIY 115 (117)
T ss_dssp ---HHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-EEE
T ss_pred ---HHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCCEEE
Confidence 3456788899977665444 45666666666676553
No 241
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.71 E-value=0.00012 Score=62.86 Aligned_cols=35 Identities=23% Similarity=0.366 Sum_probs=32.7
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCC
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRT 103 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~ 103 (359)
++..+|+|+|+|.+|+.+|..|+..|+ +++++|++
T Consensus 19 L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 19 LEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 677899999999999999999999998 69999987
No 242
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.71 E-value=0.00013 Score=65.23 Aligned_cols=78 Identities=21% Similarity=0.240 Sum_probs=63.5
Q ss_pred ccCCCCeEEEEcCC-hhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHh
Q 018213 67 ADELPGRIGFLGMG-IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA 145 (359)
Q Consensus 67 ~~~~~~~igiiG~G-~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~ 145 (359)
.+++++++.|||.+ ..|+.+|..|...|..|+.+.++. .++.+.+++||+||.+++.+ +++
T Consensus 148 i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t--------------~~L~~~~~~ADIvI~Avgk~----~lv 209 (279)
T PRK14178 148 ISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT--------------ENLKAELRQADILVSAAGKA----GFI 209 (279)
T ss_pred CCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh--------------hHHHHHHhhCCEEEECCCcc----ccc
Confidence 34889999999998 899999999999999999987643 25778889999999999755 234
Q ss_pred cccccccccCCCCCEEEeccCC
Q 018213 146 CGKHGAASGMGPGKGYVDVSTV 167 (359)
Q Consensus 146 ~~~~~~~~~l~~~~~vi~~s~~ 167 (359)
.++ .+++|+++||++..
T Consensus 210 --~~~---~vk~GavVIDVgi~ 226 (279)
T PRK14178 210 --TPD---MVKPGATVIDVGIN 226 (279)
T ss_pred --CHH---HcCCCcEEEEeecc
Confidence 222 36999999999754
No 243
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.70 E-value=0.00039 Score=59.86 Aligned_cols=76 Identities=16% Similarity=0.144 Sum_probs=53.4
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccc-hhHHHhCC-CccCC--CHHHHhhcCCEEEEeeCChhHHHHH
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK-CDPLISLG-AKYQP--SPDEVAASCDVTFAMLADPESAMDV 144 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~-~~~~~~~g-~~~~~--~~~~~~~~aDivi~~~p~~~~~~~~ 144 (359)
+++++|.|||.|.+|...++.|...|++|+++++.... ...+.+.+ +.... -.++.+.++|+||.++. .+++...
T Consensus 8 l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~-d~elN~~ 86 (202)
T PRK06718 8 LSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATN-DPRVNEQ 86 (202)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCC-CHHHHHH
Confidence 78899999999999999999999999999999876432 23333332 22111 11234678999999985 4555554
Q ss_pred h
Q 018213 145 A 145 (359)
Q Consensus 145 ~ 145 (359)
+
T Consensus 87 i 87 (202)
T PRK06718 87 V 87 (202)
T ss_pred H
Confidence 4
No 244
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=97.69 E-value=0.00016 Score=67.49 Aligned_cols=88 Identities=9% Similarity=0.073 Sum_probs=56.2
Q ss_pred CeEEEEcCChhhHHHHHHHHHC-CCcEEE-EcCCccchhHHHh-------------------CCCccCCCHHHHhhcCCE
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKA-GCDVTV-WNRTKSKCDPLIS-------------------LGAKYQPSPDEVAASCDV 130 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~-g~~V~~-~d~~~~~~~~~~~-------------------~g~~~~~~~~~~~~~aDi 130 (359)
+||||+|+|+||+.+++.+... ++++.+ ++++++....+.+ .++....++++++.++|+
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDV 81 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADI 81 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCE
Confidence 6899999999999999998764 577664 5555432222211 123344567788888999
Q ss_pred EEEeeCChhHHHHHhcccccccccCCCCCEEEeccC
Q 018213 131 TFAMLADPESAMDVACGKHGAASGMGPGKGYVDVST 166 (359)
Q Consensus 131 vi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~ 166 (359)
|+.|+|.. ...... + ..++.|..+|+.+.
T Consensus 82 VIdaT~~~-~~~e~a---~---~~~~aGk~VI~~~~ 110 (341)
T PRK04207 82 VVDATPGG-VGAKNK---E---LYEKAGVKAIFQGG 110 (341)
T ss_pred EEECCCch-hhHHHH---H---HHHHCCCEEEEcCC
Confidence 99999743 333333 2 23445666665544
No 245
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.69 E-value=0.00018 Score=64.34 Aligned_cols=79 Identities=19% Similarity=0.257 Sum_probs=62.8
Q ss_pred ccCCCCeEEEEcCC-hhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHh
Q 018213 67 ADELPGRIGFLGMG-IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA 145 (359)
Q Consensus 67 ~~~~~~~igiiG~G-~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~ 145 (359)
.+++++++.|||-+ .+|+.++..|...|..|+++.... .++.+..++|||||.++..+.- +
T Consensus 153 i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T--------------~~l~~~~~~ADIvV~AvGkp~~----i 214 (281)
T PRK14183 153 IDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFT--------------KDLKAHTKKADIVIVGVGKPNL----I 214 (281)
T ss_pred CCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------cCHHHHHhhCCEEEEecCcccc----c
Confidence 34889999999998 799999999999999999886432 2567788999999999976542 2
Q ss_pred cccccccccCCCCCEEEeccCCC
Q 018213 146 CGKHGAASGMGPGKGYVDVSTVD 168 (359)
Q Consensus 146 ~~~~~~~~~l~~~~~vi~~s~~~ 168 (359)
. .+++++|+++||++...
T Consensus 215 --~---~~~vk~gavvIDvGin~ 232 (281)
T PRK14183 215 --T---EDMVKEGAIVIDIGINR 232 (281)
T ss_pred --C---HHHcCCCcEEEEeeccc
Confidence 1 23578999999997543
No 246
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.68 E-value=0.00021 Score=64.05 Aligned_cols=79 Identities=24% Similarity=0.268 Sum_probs=63.0
Q ss_pred ccCCCCeEEEEcCC-hhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHh
Q 018213 67 ADELPGRIGFLGMG-IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA 145 (359)
Q Consensus 67 ~~~~~~~igiiG~G-~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~ 145 (359)
.++.++++.|||-+ .+|+.++..|...|..|+++.... .++.+.+++|||||.+++.+.- +
T Consensus 153 i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T--------------~~l~~~~~~ADIvI~AvG~~~~----i 214 (284)
T PRK14170 153 TQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRT--------------KDLPQVAKEADILVVATGLAKF----V 214 (284)
T ss_pred CCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEecCCcCc----c
Confidence 35889999999985 589999999999999999986532 2567888999999999986642 3
Q ss_pred cccccccccCCCCCEEEeccCCC
Q 018213 146 CGKHGAASGMGPGKGYVDVSTVD 168 (359)
Q Consensus 146 ~~~~~~~~~l~~~~~vi~~s~~~ 168 (359)
+ .+.+++|+++||++...
T Consensus 215 --~---~~~vk~GavVIDvGin~ 232 (284)
T PRK14170 215 --K---KDYIKPGAIVIDVGMDR 232 (284)
T ss_pred --C---HHHcCCCCEEEEccCcc
Confidence 1 23578999999997554
No 247
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.68 E-value=0.0001 Score=67.82 Aligned_cols=66 Identities=20% Similarity=0.314 Sum_probs=49.2
Q ss_pred CeEEEEcCChhhHHHHHHHHHCC--CcEEEEcCCccchhH----HHhCC-----Cc-cCCCHHHHhhcCCEEEEeeCCh
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKAG--CDVTVWNRTKSKCDP----LISLG-----AK-YQPSPDEVAASCDVTFAMLADP 138 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~g--~~V~~~d~~~~~~~~----~~~~g-----~~-~~~~~~~~~~~aDivi~~~p~~ 138 (359)
|||+|||+|.+|..+|..|+..| .+|.++|+++++.+. +.... .. ...+. +.+++||+|+++++.+
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiViita~~~ 78 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVITAGAN 78 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEEccCCC
Confidence 57999999999999999999999 589999998765542 22110 01 12344 5578999999999754
No 248
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=97.68 E-value=0.00016 Score=65.08 Aligned_cols=113 Identities=23% Similarity=0.233 Sum_probs=78.7
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhC----CCc-cCCCHHHH--hhcCCEEEEeeCChhH
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL----GAK-YQPSPDEV--AASCDVTFAMLADPES 140 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~----g~~-~~~~~~~~--~~~aDivi~~~p~~~~ 140 (359)
.+++++.|+|+|..+++++..|+..|. +|++++|+.++.+++.+. +.. ......++ ..++|+||.++|....
T Consensus 124 ~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~Gm~ 203 (283)
T COG0169 124 VTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVGMA 203 (283)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCCCC
Confidence 457899999999999999999999995 799999999888777653 110 11122222 1258999999987644
Q ss_pred HHH---HhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213 141 AMD---VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (359)
Q Consensus 141 ~~~---~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (359)
-.. .+ . ...++++.++.|+--.+..+ .+.+..++.|...++
T Consensus 204 ~~~~~~~~---~--~~~l~~~~~v~D~vY~P~~T--plL~~A~~~G~~~id 247 (283)
T COG0169 204 GPEGDSPV---P--AELLPKGAIVYDVVYNPLET--PLLREARAQGAKTID 247 (283)
T ss_pred CCCCCCCC---c--HHhcCcCCEEEEeccCCCCC--HHHHHHHHcCCeEEC
Confidence 331 22 1 35578899999986555433 466777777766555
No 249
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=97.65 E-value=0.00019 Score=65.00 Aligned_cols=113 Identities=19% Similarity=0.151 Sum_probs=75.1
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhC-----CC---ccCC--CHHHHhhcCCEEEEeeCC
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL-----GA---KYQP--SPDEVAASCDVTFAMLAD 137 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~-----g~---~~~~--~~~~~~~~aDivi~~~p~ 137 (359)
.+++++.|+|+|..|++++..|...|. +|++++|+.++.+.+.+. +. ...+ +..+.+..+|+||-++|.
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp~ 204 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPM 204 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCCC
Confidence 556899999999999999999999996 699999998887776542 11 1111 123455689999999985
Q ss_pred hhHHH-H-HhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213 138 PESAM-D-VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (359)
Q Consensus 138 ~~~~~-~-~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (359)
...-. . .+ . ...+.++.++.|+.-.+..+ .+.+..++.|...++
T Consensus 205 Gm~~~~~~~~---~--~~~l~~~~~v~D~vY~P~~T--~ll~~A~~~G~~~~~ 250 (283)
T PRK14027 205 GMPAHPGTAF---D--VSCLTKDHWVGDVVYMPIET--ELLKAARALGCETLD 250 (283)
T ss_pred CCCCCCCCCC---C--HHHcCCCcEEEEcccCCCCC--HHHHHHHHCCCEEEc
Confidence 43211 0 01 0 12356777888886544332 466666666665554
No 250
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.65 E-value=0.00041 Score=63.82 Aligned_cols=63 Identities=14% Similarity=0.203 Sum_probs=46.7
Q ss_pred CeEEEEcCChhhHHHHHHHHHCCC--cEEEEcCCccchhHHH----hC-------CCccCCCHHHHhhcCCEEEEee
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLI----SL-------GAKYQPSPDEVAASCDVTFAML 135 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~g~--~V~~~d~~~~~~~~~~----~~-------g~~~~~~~~~~~~~aDivi~~~ 135 (359)
+||+|||+|.+|..+|..|...|. ++.++|++.++.+... .. .+....+.++ +++||+|+++.
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~adivvita 79 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TANSKVVIVTA 79 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCCCCEEEECC
Confidence 689999999999999999988774 7999999876543221 11 1222346665 78999999966
No 251
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.62 E-value=0.00059 Score=61.98 Aligned_cols=112 Identities=18% Similarity=0.244 Sum_probs=80.2
Q ss_pred CCeEEEEcCChhhHHHHHHHHH---CCCcEE-EEcCCccchhHHHhC-C---CccCCCHHHHhhcC--CEEEEeeCChhH
Q 018213 71 PGRIGFLGMGIMGTPMAQNLLK---AGCDVT-VWNRTKSKCDPLISL-G---AKYQPSPDEVAASC--DVTFAMLADPES 140 (359)
Q Consensus 71 ~~~igiiG~G~iG~~ia~~l~~---~g~~V~-~~d~~~~~~~~~~~~-g---~~~~~~~~~~~~~a--Divi~~~p~~~~ 140 (359)
.-|+||+|+|.|++-+++.|.. .+|+|+ +++|+.++...+++. + .+.+.+.+|++++. |+|.+..|.+.+
T Consensus 6 ~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~~~k~y~syEeLakd~~vDvVyi~~~~~qH 85 (351)
T KOG2741|consen 6 TIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIPNPKAYGSYEELAKDPEVDVVYISTPNPQH 85 (351)
T ss_pred eeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCCCCCccccCHHHHhcCCCcCEEEeCCCCccH
Confidence 3679999999999999999864 357765 678888877777654 3 36688999999865 999999987666
Q ss_pred HHHHhcccccccccCCCC-CEEEecc-CCChHHHHHHHHHHHhcCCeeecC
Q 018213 141 AMDVACGKHGAASGMGPG-KGYVDVS-TVDGDTSKLINGHIKATGASFLEA 189 (359)
Q Consensus 141 ~~~~~~~~~~~~~~l~~~-~~vi~~s-~~~~~~~~~l~~~l~~~~~~~~~~ 189 (359)
.+-+. ..+..+ .+++.-- .....+.+.+.++.+.+|+.+.++
T Consensus 86 ~evv~-------l~l~~~K~VL~EKPla~n~~e~~~iveaA~~rgv~~meg 129 (351)
T KOG2741|consen 86 YEVVM-------LALNKGKHVLCEKPLAMNVAEAEEIVEAAEARGVFFMEG 129 (351)
T ss_pred HHHHH-------HHHHcCCcEEecccccCCHHHHHHHHHHHHHcCcEEEee
Confidence 55443 112222 3555432 235567788999999888777653
No 252
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.62 E-value=0.0011 Score=63.97 Aligned_cols=67 Identities=18% Similarity=0.277 Sum_probs=47.0
Q ss_pred CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCCh
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADP 138 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~ 138 (359)
++|.|||.|.+|.++|+.|.+.|++|+++|+++..........-......+...+++|++|.+.+.+
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~ 70 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIK 70 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCC
Confidence 6799999999999999999999999999998765433211000011223344457789988877544
No 253
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=97.61 E-value=0.00029 Score=63.65 Aligned_cols=79 Identities=27% Similarity=0.391 Sum_probs=63.2
Q ss_pred ccCCCCeEEEEcCC-hhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHh
Q 018213 67 ADELPGRIGFLGMG-IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA 145 (359)
Q Consensus 67 ~~~~~~~igiiG~G-~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~ 145 (359)
.++.++++.|||-+ .+|+.++..|...|..|+++.... .++++.+++|||||.++..+ +++
T Consensus 163 i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~T--------------~nl~~~~~~ADIvv~AvGk~----~~i 224 (299)
T PLN02516 163 IPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRT--------------PDPESIVREADIVIAAAGQA----MMI 224 (299)
T ss_pred CCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEcCCCc----Ccc
Confidence 45889999999985 589999999999999999996532 35778899999999999765 333
Q ss_pred cccccccccCCCCCEEEeccCCC
Q 018213 146 CGKHGAASGMGPGKGYVDVSTVD 168 (359)
Q Consensus 146 ~~~~~~~~~l~~~~~vi~~s~~~ 168 (359)
. .+++++|+++||++...
T Consensus 225 --~---~~~vk~gavVIDvGin~ 242 (299)
T PLN02516 225 --K---GDWIKPGAAVIDVGTNA 242 (299)
T ss_pred --C---HHHcCCCCEEEEeeccc
Confidence 1 24588999999997543
No 254
>COG4408 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.58 E-value=0.014 Score=52.64 Aligned_cols=266 Identities=14% Similarity=0.168 Sum_probs=151.6
Q ss_pred CCeEEEEcCChhhHHHHHHHHHCC-CcEEEEcCCccchhHHHh---C-----------------CC----ccCCCHHHHh
Q 018213 71 PGRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLIS---L-----------------GA----KYQPSPDEVA 125 (359)
Q Consensus 71 ~~~igiiG~G~iG~~ia~~l~~~g-~~V~~~d~~~~~~~~~~~---~-----------------g~----~~~~~~~~~~ 125 (359)
+.++.++|+|...-.+|.-+...| +++-.++|-..+.+.+.+ . |- ....+++++.
T Consensus 4 m~~vLllGtGpvaIQlAv~l~~h~d~~lg~~~r~s~rse~l~qala~~~ql~l~~q~eahr~leg~~~id~~~kd~a~~~ 83 (431)
T COG4408 4 MLPVLLLGTGPVAIQLAVDLSAHGDARLGLYNRPSTRSERLKQALALTPQLYLQGQGEAHRQLEGSVTIDCYIKDLAQAV 83 (431)
T ss_pred ccceeEeecCcHHHHHHHHHHhccCceeeccCCCCchhHHHHHHHhcCCeEEEEeccHHHHhhcCceehhHHHhhHHHhh
Confidence 467999999999999999999887 678888875444333332 1 10 1234677777
Q ss_pred hcCCEEEEeeCChhHHHHHhccccccc-ccCCC--CCEEEeccCCChHHHHHHHHHHHhcCCeeecCC-------CCCCC
Q 018213 126 ASCDVTFAMLADPESAMDVACGKHGAA-SGMGP--GKGYVDVSTVDGDTSKLINGHIKATGASFLEAP-------VSGSK 195 (359)
Q Consensus 126 ~~aDivi~~~p~~~~~~~~~~~~~~~~-~~l~~--~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~-------~~~~~ 195 (359)
.+-+-+|+||| .++..+++ +++- +.++. ..++|.-+-|+-.....+...+. ..+.++... .+..+
T Consensus 84 ~dwqtlilav~-aDaY~dvl---qqi~~e~L~~vk~viLiSptfGsn~lv~~~mnk~~-~daeViS~SsY~~dTk~id~~ 158 (431)
T COG4408 84 GDWQTLILAVP-ADAYYDVL---QQIPWEALPQVKSVILISPTFGSNLLVQNLMNKAG-RDAEVISLSSYYADTKYIDAE 158 (431)
T ss_pred chhheEEEEee-cHHHHHHH---hcCCHhHhccccEEEEecccccccHHHHHHHhhhC-CCceEEEeehhcccceeeccc
Confidence 78899999997 56777777 4332 22333 33444443444433333433332 233333311 11111
Q ss_pred ccc-----cCCceEEEec--CCHHHHHHHHHHHHHhCCCeEEeCccChHHHHH-----------------HHH-------
Q 018213 196 KPA-----EDGQLIFLAA--GDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMK-----------------LVV------- 244 (359)
Q Consensus 196 ~~~-----~~~~~~~~~~--g~~~~~~~v~~ll~~lg~~~~~~g~~~~~~~~k-----------------l~~------- 244 (359)
+.. .-..-+.+.+ ++....+.+..+++..|..+..+..+-.++... .+.
T Consensus 159 ~p~~alTkavKkriYlgs~~~ns~~~e~l~~v~aq~~I~v~~~esp~~AEtrnit~YVHpPlflndfsL~aif~~~~~p~ 238 (431)
T COG4408 159 QPNRALTKAVKKRIYLGSQHGNSGSAEMLTAVLAQHGIDVEPCESPLAAETRNITLYVHPPLFLNDFSLQAIFYPEQRPQ 238 (431)
T ss_pred CcchHHHHHHhHheeeccCCCCChHHHHHHHHHHhcCCceEEcCChhhhhhcccceeecCcchhhhhHHHHHhCCcCCCc
Confidence 110 0011122222 356667788899998888776665543333222 111
Q ss_pred ------------HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcc--ccchhh-----hhc---------------c
Q 018213 245 ------------NMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGA--ISAPMY-----SLK---------------G 290 (359)
Q Consensus 245 ------------n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~--~~s~~~-----~~~---------------~ 290 (359)
..++.-+.....|.+++..+.|+.+-.+.+.++... ....++ +.+ .
T Consensus 239 yvYKlyPEGPIt~~lIr~mr~lwke~m~ll~r~~ve~iNLLrFl~ddNYPV~~e~l~r~dId~F~~~~~i~QeYlLfVRY 318 (431)
T COG4408 239 YVYKLYPEGPITPALIRDMRGLWKEYMRLLNRLGVEEINLLRFLNDDNYPVRAEMLSRRDIDEFPQLPPIEQEYLLFVRY 318 (431)
T ss_pred eeEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHhccCCCCcChhhcCccchhhcccCChHHHHHHHHHHH
Confidence 245555677889999999999998888888776531 000011 000 0
Q ss_pred cccccCCCCC--------Cc----------------chhH----HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHC
Q 018213 291 PSMIESLYPT--------AF----------------PLKH----QQKDLRLALGLAESVSQSTPIAAAANELYKVAKSH 341 (359)
Q Consensus 291 ~~~~~~~~~~--------~~----------------~~~~----~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~ 341 (359)
..++-+.|.+ .| .++. -..-+..+.-++...++++|.++.+..-|+.+..+
T Consensus 319 talLvDPfS~pDEqG~yfDFSAVpfr~Vy~de~gl~~lPRvP~EDy~kla~iq~la~~l~v~~Pt~dq~lt~ye~a~k~ 397 (431)
T COG4408 319 TALLVDPFSTPDEQGRYFDFSAVPFRTVYQDENGLWHLPRVPLEDYYKLATIQLLAGALDVVMPTADQLLTRYEQALKA 397 (431)
T ss_pred HHHhcCCCCCccccCccccccccceeeeeecccccccCCCCcHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHH
Confidence 0111111110 01 1111 12225788889999999999999999999998875
No 255
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.58 E-value=0.00037 Score=62.47 Aligned_cols=79 Identities=22% Similarity=0.270 Sum_probs=63.4
Q ss_pred ccCCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHh
Q 018213 67 ADELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA 145 (359)
Q Consensus 67 ~~~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~ 145 (359)
.++.++++.|||- ..+|+.++..|...|..|++++... .++.+..++|||||.+++.+.- +
T Consensus 155 i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T--------------~~l~~~~~~ADIvIsAvGk~~~----i 216 (284)
T PRK14177 155 IDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKT--------------QNLPSIVRQADIIVGAVGKPEF----I 216 (284)
T ss_pred CCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEeCCCcCc----c
Confidence 3488999999997 5589999999999999999987532 2567888999999999986643 3
Q ss_pred cccccccccCCCCCEEEeccCCC
Q 018213 146 CGKHGAASGMGPGKGYVDVSTVD 168 (359)
Q Consensus 146 ~~~~~~~~~l~~~~~vi~~s~~~ 168 (359)
. .+.+++|+++||++...
T Consensus 217 --~---~~~ik~gavVIDvGin~ 234 (284)
T PRK14177 217 --K---ADWISEGAVLLDAGYNP 234 (284)
T ss_pred --C---HHHcCCCCEEEEecCcc
Confidence 1 23578999999997643
No 256
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.57 E-value=0.00036 Score=62.51 Aligned_cols=79 Identities=24% Similarity=0.293 Sum_probs=62.3
Q ss_pred ccCCCCeEEEEcCC-hhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHh
Q 018213 67 ADELPGRIGFLGMG-IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA 145 (359)
Q Consensus 67 ~~~~~~~igiiG~G-~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~ 145 (359)
.+++++++.|||-+ .+|+.++..|.+.|..|+++.... .++.+..++|||||.+++.+. ++
T Consensus 153 i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T--------------~nl~~~~~~ADIvI~AvGk~~----~i 214 (282)
T PRK14182 153 VDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRT--------------ADLAGEVGRADILVAAIGKAE----LV 214 (282)
T ss_pred CCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEecCCcC----cc
Confidence 34889999999975 589999999999999999986532 256678899999999998653 23
Q ss_pred cccccccccCCCCCEEEeccCCC
Q 018213 146 CGKHGAASGMGPGKGYVDVSTVD 168 (359)
Q Consensus 146 ~~~~~~~~~l~~~~~vi~~s~~~ 168 (359)
. .+++++|+++||++...
T Consensus 215 --~---~~~ik~gaiVIDvGin~ 232 (282)
T PRK14182 215 --K---GAWVKEGAVVIDVGMNR 232 (282)
T ss_pred --C---HHHcCCCCEEEEeecee
Confidence 1 23578999999997443
No 257
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.57 E-value=0.00038 Score=62.59 Aligned_cols=79 Identities=23% Similarity=0.305 Sum_probs=62.8
Q ss_pred ccCCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHh
Q 018213 67 ADELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA 145 (359)
Q Consensus 67 ~~~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~ 145 (359)
.+++++++.|||- ..+|+.++..|...|..|+++.+.. .++.+..++|||||.++..+. ++
T Consensus 151 i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T--------------~~l~~~~~~ADIvIsAvGkp~----~i 212 (287)
T PRK14173 151 IPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT--------------QDLPAVTRRADVLVVAVGRPH----LI 212 (287)
T ss_pred CCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEecCCcC----cc
Confidence 3478999999997 5689999999999999999887532 256788899999999998663 23
Q ss_pred cccccccccCCCCCEEEeccCCC
Q 018213 146 CGKHGAASGMGPGKGYVDVSTVD 168 (359)
Q Consensus 146 ~~~~~~~~~l~~~~~vi~~s~~~ 168 (359)
+ .+++++|+++||++...
T Consensus 213 --~---~~~vk~GavVIDVGin~ 230 (287)
T PRK14173 213 --T---PEMVRPGAVVVDVGINR 230 (287)
T ss_pred --C---HHHcCCCCEEEEccCcc
Confidence 1 23578999999997543
No 258
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.56 E-value=0.00036 Score=63.04 Aligned_cols=78 Identities=24% Similarity=0.308 Sum_probs=62.5
Q ss_pred cCCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhc
Q 018213 68 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 146 (359)
Q Consensus 68 ~~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~ 146 (359)
+++++++.|||- ..+|+.++..|...|..|+++.... .++.+.+++|||||.+++.+. ++
T Consensus 155 ~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T--------------~~l~~~~~~ADIvIsAvGkp~----~i- 215 (297)
T PRK14186 155 DIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSRT--------------QDLASITREADILVAAAGRPN----LI- 215 (297)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCCcC----cc-
Confidence 478999999997 5589999999999999999986432 256788899999999998664 23
Q ss_pred ccccccccCCCCCEEEeccCCC
Q 018213 147 GKHGAASGMGPGKGYVDVSTVD 168 (359)
Q Consensus 147 ~~~~~~~~l~~~~~vi~~s~~~ 168 (359)
+ .+++++|+++||++...
T Consensus 216 -~---~~~ik~gavVIDvGin~ 233 (297)
T PRK14186 216 -G---AEMVKPGAVVVDVGIHR 233 (297)
T ss_pred -C---HHHcCCCCEEEEecccc
Confidence 1 23578999999997544
No 259
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.56 E-value=0.00037 Score=62.36 Aligned_cols=77 Identities=25% Similarity=0.340 Sum_probs=62.0
Q ss_pred cCCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhc
Q 018213 68 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 146 (359)
Q Consensus 68 ~~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~ 146 (359)
+++++++.|||- ..+|+.++..|...|..|+++.... .++.+..++|||||.+++.+.- +
T Consensus 155 ~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T--------------~~l~~~~~~ADIvIsAvGkp~~----i- 215 (278)
T PRK14172 155 DIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKT--------------KNLKEVCKKADILVVAIGRPKF----I- 215 (278)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEcCCCcCc----c-
Confidence 478999999997 5589999999999999999997532 2567888999999999986643 3
Q ss_pred ccccccccCCCCCEEEeccCC
Q 018213 147 GKHGAASGMGPGKGYVDVSTV 167 (359)
Q Consensus 147 ~~~~~~~~l~~~~~vi~~s~~ 167 (359)
+ .+++++|+++||++..
T Consensus 216 -~---~~~ik~gavVIDvGin 232 (278)
T PRK14172 216 -D---EEYVKEGAIVIDVGTS 232 (278)
T ss_pred -C---HHHcCCCcEEEEeecc
Confidence 1 2357899999999643
No 260
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.55 E-value=0.00038 Score=62.41 Aligned_cols=78 Identities=21% Similarity=0.334 Sum_probs=62.3
Q ss_pred ccCCCCeEEEEcCC-hhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHh
Q 018213 67 ADELPGRIGFLGMG-IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA 145 (359)
Q Consensus 67 ~~~~~~~igiiG~G-~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~ 145 (359)
.+++++++.|||-+ .+|+.++..|...|..|+++.... .++.+..++|||||.+++.+.- +
T Consensus 152 i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T--------------~~l~~~~~~ADIvI~AvG~p~~----i 213 (282)
T PRK14169 152 IDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKT--------------RNLKQLTKEADILVVAVGVPHF----I 213 (282)
T ss_pred CCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCC--------------CCHHHHHhhCCEEEEccCCcCc----c
Confidence 34789999999975 589999999999999999986432 2567888999999999987643 3
Q ss_pred cccccccccCCCCCEEEeccCC
Q 018213 146 CGKHGAASGMGPGKGYVDVSTV 167 (359)
Q Consensus 146 ~~~~~~~~~l~~~~~vi~~s~~ 167 (359)
+ .+++++|+++||++..
T Consensus 214 --~---~~~vk~GavVIDvGin 230 (282)
T PRK14169 214 --G---ADAVKPGAVVIDVGIS 230 (282)
T ss_pred --C---HHHcCCCcEEEEeecc
Confidence 1 2357899999999753
No 261
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=97.55 E-value=0.00075 Score=55.60 Aligned_cols=74 Identities=15% Similarity=0.172 Sum_probs=51.8
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCC-CccC-CCH-HHHhhcCCEEEEeeCChhHHHHHh
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLG-AKYQ-PSP-DEVAASCDVTFAMLADPESAMDVA 145 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g-~~~~-~~~-~~~~~~aDivi~~~p~~~~~~~~~ 145 (359)
+++++|.|||.|.+|...++.|.+.|++|+++++. ..+++.+.+ +... ..+ ++-+.++|+|+.++. ++++...+
T Consensus 11 l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~--~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT~-d~e~N~~i 87 (157)
T PRK06719 11 LHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE--ICKEMKELPYITWKQKTFSNDDIKDAHLIYAATN-QHAVNMMV 87 (157)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc--cCHHHHhccCcEEEecccChhcCCCceEEEECCC-CHHHHHHH
Confidence 88899999999999999999999999999999643 334444322 1111 011 123578999999884 55555544
No 262
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=97.54 E-value=0.00016 Score=64.05 Aligned_cols=94 Identities=16% Similarity=0.062 Sum_probs=71.2
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhccc
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK 148 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~ 148 (359)
..++.+.|.|+|.+|+.-|+.|+.+|..|++...+|=..-+..=+|.+++ +++|++++.||++.++- -++++ .
T Consensus 212 ~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~V~-tm~ea~~e~difVTtTG----c~dii--~ 284 (434)
T KOG1370|consen 212 IAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGYEVT-TLEEAIREVDIFVTTTG----CKDII--T 284 (434)
T ss_pred ecccEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhccEee-eHHHhhhcCCEEEEccC----Ccchh--h
Confidence 45566777799999999999999999999998887643322233466655 89999999999988763 23444 2
Q ss_pred ccccccCCCCCEEEeccCCCh
Q 018213 149 HGAASGMGPGKGYVDVSTVDG 169 (359)
Q Consensus 149 ~~~~~~l~~~~~vi~~s~~~~ 169 (359)
.+.+..||.++++.|++-...
T Consensus 285 ~~H~~~mk~d~IvCN~Ghfd~ 305 (434)
T KOG1370|consen 285 GEHFDQMKNDAIVCNIGHFDT 305 (434)
T ss_pred HHHHHhCcCCcEEeccccccc
Confidence 556788999999999866543
No 263
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.54 E-value=0.00042 Score=62.16 Aligned_cols=78 Identities=23% Similarity=0.225 Sum_probs=62.4
Q ss_pred ccCCCCeEEEEcCC-hhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHh
Q 018213 67 ADELPGRIGFLGMG-IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA 145 (359)
Q Consensus 67 ~~~~~~~igiiG~G-~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~ 145 (359)
.++.++++.|||-+ .+|+.++..|...|..|+++.+.. .++.+..++|||||.++..+.- +
T Consensus 153 i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T--------------~nl~~~~~~ADIvIsAvGkp~~----i 214 (282)
T PRK14166 153 IDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT--------------KDLSLYTRQADLIIVAAGCVNL----L 214 (282)
T ss_pred CCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEcCCCcCc----c
Confidence 34889999999975 589999999999999999987543 2577888999999999986643 2
Q ss_pred cccccccccCCCCCEEEeccCC
Q 018213 146 CGKHGAASGMGPGKGYVDVSTV 167 (359)
Q Consensus 146 ~~~~~~~~~l~~~~~vi~~s~~ 167 (359)
+ .+.+++|+++||++..
T Consensus 215 --~---~~~vk~GavVIDvGin 231 (282)
T PRK14166 215 --R---SDMVKEGVIVVDVGIN 231 (282)
T ss_pred --C---HHHcCCCCEEEEeccc
Confidence 1 1357899999999743
No 264
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.54 E-value=0.00043 Score=62.20 Aligned_cols=78 Identities=22% Similarity=0.377 Sum_probs=62.1
Q ss_pred ccCCCCeEEEEcCC-hhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHh
Q 018213 67 ADELPGRIGFLGMG-IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA 145 (359)
Q Consensus 67 ~~~~~~~igiiG~G-~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~ 145 (359)
.++.++++.|||-+ .+|+.++..|...|..|+++.... .++.+..++|||||.++..+. ++
T Consensus 155 i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~T--------------~~L~~~~~~ADIvV~AvGkp~----~i 216 (288)
T PRK14171 155 PNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKT--------------HNLSSITSKADIVVAAIGSPL----KL 216 (288)
T ss_pred CCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCCCC----cc
Confidence 34889999999985 589999999999999999887432 357788899999999998664 33
Q ss_pred cccccccccCCCCCEEEeccCC
Q 018213 146 CGKHGAASGMGPGKGYVDVSTV 167 (359)
Q Consensus 146 ~~~~~~~~~l~~~~~vi~~s~~ 167 (359)
. .+.+++|+++||++-.
T Consensus 217 --~---~~~vk~GavVIDvGin 233 (288)
T PRK14171 217 --T---AEYFNPESIVIDVGIN 233 (288)
T ss_pred --C---HHHcCCCCEEEEeecc
Confidence 1 2357899999999743
No 265
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=97.53 E-value=0.00038 Score=63.75 Aligned_cols=78 Identities=22% Similarity=0.345 Sum_probs=62.3
Q ss_pred ccCCCCeEEEEcCC-hhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHh
Q 018213 67 ADELPGRIGFLGMG-IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA 145 (359)
Q Consensus 67 ~~~~~~~igiiG~G-~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~ 145 (359)
.+++++++.|||-+ .+|+.++..|...|..|+++.... .++.+..++|||||.+++.+.- +
T Consensus 210 i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T--------------~nl~~~~~~ADIvIsAvGkp~~----v 271 (345)
T PLN02897 210 VEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT--------------KDPEQITRKADIVIAAAGIPNL----V 271 (345)
T ss_pred CCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC--------------CCHHHHHhhCCEEEEccCCcCc----c
Confidence 34889999999975 589999999999999999886532 2567888999999999986642 3
Q ss_pred cccccccccCCCCCEEEeccCC
Q 018213 146 CGKHGAASGMGPGKGYVDVSTV 167 (359)
Q Consensus 146 ~~~~~~~~~l~~~~~vi~~s~~ 167 (359)
+ .+++++|+++||++..
T Consensus 272 --~---~d~vk~GavVIDVGin 288 (345)
T PLN02897 272 --R---GSWLKPGAVVIDVGTT 288 (345)
T ss_pred --C---HHHcCCCCEEEEcccc
Confidence 1 2357899999999754
No 266
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=97.53 E-value=0.00037 Score=65.10 Aligned_cols=91 Identities=24% Similarity=0.325 Sum_probs=57.4
Q ss_pred CeEEEEcC-ChhhHHHHHHHHHC-CCcEEE-EcCCccchhHHHhC-C-Cc-----cCCCHHH-HhhcCCEEEEeeCChhH
Q 018213 72 GRIGFLGM-GIMGTPMAQNLLKA-GCDVTV-WNRTKSKCDPLISL-G-AK-----YQPSPDE-VAASCDVTFAMLADPES 140 (359)
Q Consensus 72 ~~igiiG~-G~iG~~ia~~l~~~-g~~V~~-~d~~~~~~~~~~~~-g-~~-----~~~~~~~-~~~~aDivi~~~p~~~~ 140 (359)
++|+|||+ |.+|+.+++.|... ++++.. +++. +..+.+.+. + .. .+.+.++ ...++|+|++|+|.. .
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~-~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~-~ 80 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRS-SAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHG-V 80 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECcc-ccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcH-H
Confidence 78999996 99999999999876 567654 5543 222222211 0 11 1222322 446799999999854 4
Q ss_pred HHHHhcccccccccCCCCCEEEeccCCChH
Q 018213 141 AMDVACGKHGAASGMGPGKGYVDVSTVDGD 170 (359)
Q Consensus 141 ~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~ 170 (359)
..+++ .. .++.|..|||.|...-.
T Consensus 81 ~~~~v---~~---a~~aG~~VID~S~~fR~ 104 (343)
T PRK00436 81 SMDLA---PQ---LLEAGVKVIDLSADFRL 104 (343)
T ss_pred HHHHH---HH---HHhCCCEEEECCcccCC
Confidence 44444 22 23578999999876544
No 267
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=97.51 E-value=0.00026 Score=68.86 Aligned_cols=67 Identities=25% Similarity=0.308 Sum_probs=52.2
Q ss_pred CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHh-CCCccC-------CCHHHH-hhcCCEEEEeeCCh
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLIS-LGAKYQ-------PSPDEV-AASCDVTFAMLADP 138 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~-~g~~~~-------~~~~~~-~~~aDivi~~~p~~ 138 (359)
|+|.|+|+|.+|+.+++.|...|++|+++++++++.+.+.+ .++... ..++++ +.++|.|+++++..
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~ 76 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSD 76 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCCh
Confidence 57999999999999999999999999999999888777655 333221 123334 56899999999754
No 268
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=97.51 E-value=0.00015 Score=62.49 Aligned_cols=36 Identities=25% Similarity=0.425 Sum_probs=33.0
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCc
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK 104 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~ 104 (359)
++..+|.|||+|.+|+.+++.|+..|. +++++|++.
T Consensus 19 l~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 19 LLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 677899999999999999999999997 899999874
No 269
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=97.50 E-value=0.0004 Score=64.96 Aligned_cols=93 Identities=20% Similarity=0.295 Sum_probs=59.9
Q ss_pred CeEEEEcC-ChhhHHHHHHHHHC-CCcEE-EEcCCccchhHHHh-C----CC--ccCC--CHHHHhhcCCEEEEeeCChh
Q 018213 72 GRIGFLGM-GIMGTPMAQNLLKA-GCDVT-VWNRTKSKCDPLIS-L----GA--KYQP--SPDEVAASCDVTFAMLADPE 139 (359)
Q Consensus 72 ~~igiiG~-G~iG~~ia~~l~~~-g~~V~-~~d~~~~~~~~~~~-~----g~--~~~~--~~~~~~~~aDivi~~~p~~~ 139 (359)
++|+|||+ |.+|..+++.|... ++++. +++++....+.+.+ . +. ..+. +.++++.++|++++|+|..
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~- 79 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHG- 79 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCch-
Confidence 57999998 99999999999976 56777 44644322222221 1 11 0122 4556666899999999844
Q ss_pred HHHHHhcccccccccCCCCCEEEeccCCChHH
Q 018213 140 SAMDVACGKHGAASGMGPGKGYVDVSTVDGDT 171 (359)
Q Consensus 140 ~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~ 171 (359)
...++. ..+ ...|..|||.|...-.+
T Consensus 80 ~s~~~~---~~~---~~~G~~VIDlS~~fR~~ 105 (346)
T TIGR01850 80 VSAELA---PEL---LAAGVKVIDLSADFRLK 105 (346)
T ss_pred HHHHHH---HHH---HhCCCEEEeCChhhhcC
Confidence 445554 332 34689999998664433
No 270
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.50 E-value=0.00047 Score=61.80 Aligned_cols=77 Identities=21% Similarity=0.274 Sum_probs=61.7
Q ss_pred cCCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhc
Q 018213 68 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVAC 146 (359)
Q Consensus 68 ~~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~ 146 (359)
+++++++.|||- ..+|+.++..|...|..|+++.... .++.+..++|||||.+++.+.- +
T Consensus 155 ~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T--------------~dl~~~~k~ADIvIsAvGkp~~----i- 215 (282)
T PRK14180 155 KTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT--------------TDLKSHTTKADILIVAVGKPNF----I- 215 (282)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC--------------CCHHHHhhhcCEEEEccCCcCc----C-
Confidence 488999999997 5589999999999999999987532 2566778999999999987643 3
Q ss_pred ccccccccCCCCCEEEeccCC
Q 018213 147 GKHGAASGMGPGKGYVDVSTV 167 (359)
Q Consensus 147 ~~~~~~~~l~~~~~vi~~s~~ 167 (359)
+ ...+++|+++||++..
T Consensus 216 -~---~~~vk~gavVIDvGin 232 (282)
T PRK14180 216 -T---ADMVKEGAVVIDVGIN 232 (282)
T ss_pred -C---HHHcCCCcEEEEeccc
Confidence 1 1357899999999743
No 271
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.50 E-value=0.00045 Score=62.09 Aligned_cols=79 Identities=20% Similarity=0.302 Sum_probs=63.0
Q ss_pred ccCCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHh
Q 018213 67 ADELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA 145 (359)
Q Consensus 67 ~~~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~ 145 (359)
.+++++++.|||- ..+|+.++..|...|..|+++.... .++.+.+++|||||.+++.+. ++
T Consensus 154 i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t--------------~~l~~~~~~ADIvI~AvG~p~----~i 215 (284)
T PRK14190 154 IDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKT--------------KNLAELTKQADILIVAVGKPK----LI 215 (284)
T ss_pred CCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCc--------------hhHHHHHHhCCEEEEecCCCC----cC
Confidence 3488999999997 5689999999999999999986432 267788999999999997654 33
Q ss_pred cccccccccCCCCCEEEeccCCC
Q 018213 146 CGKHGAASGMGPGKGYVDVSTVD 168 (359)
Q Consensus 146 ~~~~~~~~~l~~~~~vi~~s~~~ 168 (359)
+. +.+++|+++||++...
T Consensus 216 --~~---~~ik~gavVIDvGi~~ 233 (284)
T PRK14190 216 --TA---DMVKEGAVVIDVGVNR 233 (284)
T ss_pred --CH---HHcCCCCEEEEeeccc
Confidence 22 3468999999997543
No 272
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=97.50 E-value=0.00086 Score=67.08 Aligned_cols=87 Identities=17% Similarity=0.295 Sum_probs=62.7
Q ss_pred CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccC---CCHHHH-----hhcCCEEEEeeCChhHHHH
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ---PSPDEV-----AASCDVTFAMLADPESAMD 143 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~---~~~~~~-----~~~aDivi~~~p~~~~~~~ 143 (359)
-.|-|+|+|++|+.+++.|.+.|++|++.|.++++.+.+.+.|.... .+.++. ++++|.++++++++.+...
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~~ 497 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGE 497 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHHH
Confidence 45889999999999999999999999999999998888877665321 112233 3478999999987666555
Q ss_pred HhcccccccccCCCCCEEE
Q 018213 144 VACGKHGAASGMGPGKGYV 162 (359)
Q Consensus 144 ~~~~~~~~~~~l~~~~~vi 162 (359)
++ ..... ..++..++
T Consensus 498 iv---~~~~~-~~~~~~ii 512 (558)
T PRK10669 498 IV---ASARE-KRPDIEII 512 (558)
T ss_pred HH---HHHHH-HCCCCeEE
Confidence 54 22222 33455555
No 273
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.49 E-value=0.00051 Score=61.91 Aligned_cols=78 Identities=24% Similarity=0.288 Sum_probs=62.5
Q ss_pred ccCCCCeEEEEcCC-hhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHh
Q 018213 67 ADELPGRIGFLGMG-IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA 145 (359)
Q Consensus 67 ~~~~~~~igiiG~G-~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~ 145 (359)
.++.++++.|||-+ .+|+.++..|...|..|+++.... .++.+..++|||||.+++.+.- +
T Consensus 156 i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T--------------~~l~~~~~~ADIvVsAvGkp~~----i 217 (294)
T PRK14187 156 RNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT--------------RDLADYCSKADILVAAVGIPNF----V 217 (294)
T ss_pred CCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCCcCc----c
Confidence 34889999999984 589999999999999999987532 2567888999999999987643 2
Q ss_pred cccccccccCCCCCEEEeccCC
Q 018213 146 CGKHGAASGMGPGKGYVDVSTV 167 (359)
Q Consensus 146 ~~~~~~~~~l~~~~~vi~~s~~ 167 (359)
. .+++++|+++||++..
T Consensus 218 --~---~~~ik~gaiVIDVGin 234 (294)
T PRK14187 218 --K---YSWIKKGAIVIDVGIN 234 (294)
T ss_pred --C---HHHcCCCCEEEEeccc
Confidence 1 2357899999999643
No 274
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=97.49 E-value=0.00066 Score=68.32 Aligned_cols=88 Identities=18% Similarity=0.247 Sum_probs=64.8
Q ss_pred CCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccC---CCHHHH-----hhcCCEEEEeeCChhHHH
Q 018213 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ---PSPDEV-----AASCDVTFAMLADPESAM 142 (359)
Q Consensus 71 ~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~---~~~~~~-----~~~aDivi~~~p~~~~~~ 142 (359)
..+|.|+|+|++|+.+++.|.+.|+++++.|.++++.+.+.+.|.... .+..++ ++++|.+++++++++...
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~ 479 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTM 479 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHH
Confidence 356999999999999999999999999999999999888877765331 122233 357999999998766665
Q ss_pred HHhcccccccccCCCCCEEE
Q 018213 143 DVACGKHGAASGMGPGKGYV 162 (359)
Q Consensus 143 ~~~~~~~~~~~~l~~~~~vi 162 (359)
.++ .. .....|+..++
T Consensus 480 ~i~---~~-~r~~~p~~~Ii 495 (601)
T PRK03659 480 KIV---EL-CQQHFPHLHIL 495 (601)
T ss_pred HHH---HH-HHHHCCCCeEE
Confidence 554 22 23344555555
No 275
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=97.48 E-value=0.00067 Score=52.71 Aligned_cols=85 Identities=22% Similarity=0.384 Sum_probs=58.6
Q ss_pred EEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccC----CCHHHH----hhcCCEEEEeeCChhHHHHHh
Q 018213 74 IGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ----PSPDEV----AASCDVTFAMLADPESAMDVA 145 (359)
Q Consensus 74 igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~----~~~~~~----~~~aDivi~~~p~~~~~~~~~ 145 (359)
|.|+|+|.+|..+++.|.+.+.+|++.+++++..+.+.+.|.... .+.+.+ +.++|.++++++.+.....+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n~~~~ 80 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEENLLIA 80 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHHHHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHHHHHHH
Confidence 569999999999999999977799999999998888888775431 122222 357899999997655444443
Q ss_pred cccccccccCCCCCEEE
Q 018213 146 CGKHGAASGMGPGKGYV 162 (359)
Q Consensus 146 ~~~~~~~~~l~~~~~vi 162 (359)
..+..+.+...++
T Consensus 81 ----~~~r~~~~~~~ii 93 (116)
T PF02254_consen 81 ----LLARELNPDIRII 93 (116)
T ss_dssp ----HHHHHHTTTSEEE
T ss_pred ----HHHHHHCCCCeEE
Confidence 2233344544444
No 276
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=97.48 E-value=0.00059 Score=62.06 Aligned_cols=115 Identities=14% Similarity=0.082 Sum_probs=73.9
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCcc---chhHHHhC-C----C-ccCCCH------HHHhhcCCEEE
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKS---KCDPLISL-G----A-KYQPSP------DEVAASCDVTF 132 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~---~~~~~~~~-g----~-~~~~~~------~~~~~~aDivi 132 (359)
.+++++.|+|+|..+++++..|...|. +|++++|+++ +.+.+.+. + . ....++ .+.+.++|+||
T Consensus 122 ~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~~aDivI 201 (288)
T PRK12749 122 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILT 201 (288)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhhcccCCEEE
Confidence 567899999999999999999998886 7999999853 55554432 1 1 011222 23456789999
Q ss_pred EeeCChhHH--HHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213 133 AMLADPESA--MDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (359)
Q Consensus 133 ~~~p~~~~~--~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (359)
.++|....- .... ..-...++++.++.|+.-.+.. + .+.+..+++|...++
T Consensus 202 NaTp~Gm~~~~~~~~---~~~~~~l~~~~~v~D~vY~P~~-T-~ll~~A~~~G~~~~~ 254 (288)
T PRK12749 202 NGTKVGMKPLENESL---VNDISLLHPGLLVTECVYNPHM-T-KLLQQAQQAGCKTID 254 (288)
T ss_pred ECCCCCCCCCCCCCC---CCcHHHCCCCCEEEEecCCCcc-C-HHHHHHHHCCCeEEC
Confidence 999864321 1111 0011246678889888654432 2 566777777766655
No 277
>PRK14982 acyl-ACP reductase; Provisional
Probab=97.48 E-value=0.00025 Score=65.59 Aligned_cols=112 Identities=15% Similarity=0.203 Sum_probs=75.5
Q ss_pred cCCCCeEEEEcC-ChhhHHHHHHHHH-CC-CcEEEEcCCccchhHHHhC-CCccCCCHHHHhhcCCEEEEeeCChhHHHH
Q 018213 68 DELPGRIGFLGM-GIMGTPMAQNLLK-AG-CDVTVWNRTKSKCDPLISL-GAKYQPSPDEVAASCDVTFAMLADPESAMD 143 (359)
Q Consensus 68 ~~~~~~igiiG~-G~iG~~ia~~l~~-~g-~~V~~~d~~~~~~~~~~~~-g~~~~~~~~~~~~~aDivi~~~p~~~~~~~ 143 (359)
++++++|.|+|+ |.||+.+++.|.. .| .++++++|+.++...+.+. +.....++++.+.++|+|+.+...+. .
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~~~---~ 228 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASMPK---G 228 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcCCc---C
Confidence 378899999998 8999999999975 45 5899999987776665443 11122367788899999998774322 2
Q ss_pred H-hcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCC
Q 018213 144 V-ACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192 (359)
Q Consensus 144 ~-~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~ 192 (359)
+ + +. ..++++.+++|.+.---++. .+ ...++.+++..+.
T Consensus 229 ~~I--~~---~~l~~~~~viDiAvPRDVd~-~v----~~~~V~v~~gG~V 268 (340)
T PRK14982 229 VEI--DP---ETLKKPCLMIDGGYPKNLDT-KV----QGPGIHVLKGGIV 268 (340)
T ss_pred CcC--CH---HHhCCCeEEEEecCCCCCCc-cc----CCCCEEEEeCCcc
Confidence 2 3 22 24578899999976544432 22 2256666665443
No 278
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=97.48 E-value=0.00043 Score=61.43 Aligned_cols=81 Identities=23% Similarity=0.310 Sum_probs=64.3
Q ss_pred cccCCCCeEEEEcCCh-hhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHH
Q 018213 66 EADELPGRIGFLGMGI-MGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDV 144 (359)
Q Consensus 66 ~~~~~~~~igiiG~G~-iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~ 144 (359)
..+++++++.|||-++ +|+.++..|...++.|+++.... .++.+..++||||+.++-.+. +
T Consensus 151 ~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T--------------~~l~~~~k~ADIvv~AvG~p~----~ 212 (283)
T COG0190 151 GIDLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT--------------KDLASITKNADIVVVAVGKPH----F 212 (283)
T ss_pred CCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC--------------CCHHHHhhhCCEEEEecCCcc----c
Confidence 3457999999999977 69999999999999999998643 256678899999999996543 3
Q ss_pred hcccccccccCCCCCEEEeccCCCh
Q 018213 145 ACGKHGAASGMGPGKGYVDVSTVDG 169 (359)
Q Consensus 145 ~~~~~~~~~~l~~~~~vi~~s~~~~ 169 (359)
+ + .+++++|+++||++....
T Consensus 213 i--~---~d~vk~gavVIDVGinrv 232 (283)
T COG0190 213 I--K---ADMVKPGAVVIDVGINRV 232 (283)
T ss_pred c--c---cccccCCCEEEecCCccc
Confidence 3 1 246899999999965433
No 279
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.48 E-value=0.00057 Score=61.34 Aligned_cols=79 Identities=16% Similarity=0.232 Sum_probs=62.7
Q ss_pred ccCCCCeEEEEcC-ChhhHHHHHHHHH--CCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHH
Q 018213 67 ADELPGRIGFLGM-GIMGTPMAQNLLK--AGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMD 143 (359)
Q Consensus 67 ~~~~~~~igiiG~-G~iG~~ia~~l~~--~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~ 143 (359)
.++.++++.|||- ..+|+.++..|.. .+..|+++.... .++.+.+++|||||.+++.+.
T Consensus 154 i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~T--------------~~l~~~~k~ADIvV~AvGkp~---- 215 (284)
T PRK14193 154 VELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTGT--------------RDLAAHTRRADIIVAAAGVAH---- 215 (284)
T ss_pred CCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCCC--------------CCHHHHHHhCCEEEEecCCcC----
Confidence 3478999999997 5689999999988 688999987532 367788999999999998764
Q ss_pred HhcccccccccCCCCCEEEeccCCC
Q 018213 144 VACGKHGAASGMGPGKGYVDVSTVD 168 (359)
Q Consensus 144 ~~~~~~~~~~~l~~~~~vi~~s~~~ 168 (359)
++ . ..++++|+++||++...
T Consensus 216 ~i--~---~~~ik~GavVIDvGin~ 235 (284)
T PRK14193 216 LV--T---ADMVKPGAAVLDVGVSR 235 (284)
T ss_pred cc--C---HHHcCCCCEEEEccccc
Confidence 23 1 23578999999997544
No 280
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=97.47 E-value=0.0002 Score=65.86 Aligned_cols=67 Identities=12% Similarity=0.151 Sum_probs=47.5
Q ss_pred EEEEcCChhhHHHHHHHHHC-CCcEEE-EcCCccchhHHHh-------------------CCCccCCCHHHHhhcCCEEE
Q 018213 74 IGFLGMGIMGTPMAQNLLKA-GCDVTV-WNRTKSKCDPLIS-------------------LGAKYQPSPDEVAASCDVTF 132 (359)
Q Consensus 74 igiiG~G~iG~~ia~~l~~~-g~~V~~-~d~~~~~~~~~~~-------------------~g~~~~~~~~~~~~~aDivi 132 (359)
|||+|+|+||+.+++.+... +++|.+ .|.+++....+.. .++....++++++.++|+|+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv 80 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV 80 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence 68999999999999998754 567664 5655553223322 12334557899999999999
Q ss_pred EeeCChhH
Q 018213 133 AMLADPES 140 (359)
Q Consensus 133 ~~~p~~~~ 140 (359)
.|+|....
T Consensus 81 e~Tp~~~~ 88 (333)
T TIGR01546 81 DATPGGIG 88 (333)
T ss_pred ECCCCCCC
Confidence 99986543
No 281
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=97.47 E-value=0.0017 Score=58.84 Aligned_cols=114 Identities=14% Similarity=0.085 Sum_probs=79.7
Q ss_pred CCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccc-hhHHHhCCCccCCCHHHHhhc--CCEEEEeeCChhHHHHHh
Q 018213 70 LPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSK-CDPLISLGAKYQPSPDEVAAS--CDVTFAMLADPESAMDVA 145 (359)
Q Consensus 70 ~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~-~~~~~~~g~~~~~~~~~~~~~--aDivi~~~p~~~~~~~~~ 145 (359)
++.||.|.|. |.+|..+.+.|.++|++ .+|-.+|.+ .++ -.|+..+.+++|+-.. .|+.++++| .+.+.+++
T Consensus 7 ~~~~~~v~~~~~~~g~~~l~~l~~~g~~-~v~pVnp~~~~~~--v~G~~~y~sv~dlp~~~~~DlAvi~vp-~~~v~~~l 82 (291)
T PRK05678 7 KDTKVIVQGITGKQGTFHTEQMLAYGTN-IVGGVTPGKGGTT--VLGLPVFNTVAEAVEATGANASVIYVP-PPFAADAI 82 (291)
T ss_pred CCCeEEEeCCCchHHHHHHHHHHHCCCC-EEEEECCCCCCCe--EeCeeccCCHHHHhhccCCCEEEEEcC-HHHHHHHH
Confidence 3467999996 99999999999999997 444444431 111 1378888999999876 899999998 67777777
Q ss_pred cccccccccCCCCCEEEeccCC-ChHHHHHHHHHHHhcCCeeecCCCC
Q 018213 146 CGKHGAASGMGPGKGYVDVSTV-DGDTSKLINGHIKATGASFLEAPVS 192 (359)
Q Consensus 146 ~~~~~~~~~l~~~~~vi~~s~~-~~~~~~~l~~~l~~~~~~~~~~~~~ 192 (359)
++..+.=-+..+|+ |.+ ...+.+++.+..++.|+++++...+
T Consensus 83 ---~e~~~~gvk~avI~--s~Gf~~~~~~~l~~~a~~~girvlGPNc~ 125 (291)
T PRK05678 83 ---LEAIDAGIDLIVCI--TEGIPVLDMLEVKAYLERKKTRLIGPNCP 125 (291)
T ss_pred ---HHHHHCCCCEEEEE--CCCCCHHHHHHHHHHHHHcCCEEECCCCC
Confidence 55544222333333 444 3344458888888899999875443
No 282
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=97.47 E-value=0.0013 Score=59.50 Aligned_cols=114 Identities=14% Similarity=0.105 Sum_probs=80.6
Q ss_pred CCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhc--CCEEEEeeCChhHHHHHhcc
Q 018213 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAAS--CDVTFAMLADPESAMDVACG 147 (359)
Q Consensus 71 ~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~--aDivi~~~p~~~~~~~~~~~ 147 (359)
+.+|.|.|. |.+|..+-+.+...|++ .++..+|.+-.. .-.|+..+.+++|+... .|+.++++| ...+.+++
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~~~g~~-~v~~V~p~~~~~-~v~G~~~y~sv~dlp~~~~~Dlavi~vp-a~~v~~~l-- 80 (286)
T TIGR01019 6 DTKVIVQGITGSQGSFHTEQMLAYGTN-IVGGVTPGKGGT-TVLGLPVFDSVKEAVEETGANASVIFVP-APFAADAI-- 80 (286)
T ss_pred CCcEEEecCCcHHHHHHHHHHHhCCCC-EEEEECCCCCcc-eecCeeccCCHHHHhhccCCCEEEEecC-HHHHHHHH--
Confidence 467999995 99999999999999998 556666652111 12478889999998876 699999998 67777777
Q ss_pred cccccccCCCCCEEEeccCC-ChHHHHHHHHHHHhcCCeeecCCCC
Q 018213 148 KHGAASGMGPGKGYVDVSTV-DGDTSKLINGHIKATGASFLEAPVS 192 (359)
Q Consensus 148 ~~~~~~~l~~~~~vi~~s~~-~~~~~~~l~~~l~~~~~~~~~~~~~ 192 (359)
++....=-+ ..+|- +.+ ...+.+++.+..++.|+++++...+
T Consensus 81 -~e~~~~Gvk-~avIi-s~Gf~e~~~~~l~~~a~~~girilGPNc~ 123 (286)
T TIGR01019 81 -FEAIDAGIE-LIVCI-TEGIPVHDMLKVKRYMEESGTRLIGPNCP 123 (286)
T ss_pred -HHHHHCCCC-EEEEE-CCCCCHHHHHHHHHHHHHcCCEEECCCCc
Confidence 555442222 33332 444 3344678888888889998875443
No 283
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=97.44 E-value=0.00058 Score=62.87 Aligned_cols=78 Identities=22% Similarity=0.388 Sum_probs=62.5
Q ss_pred ccCCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHh
Q 018213 67 ADELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVA 145 (359)
Q Consensus 67 ~~~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~ 145 (359)
.+++++++.|||- ..+|+.++..|...+..|+++.... .++.+.+++|||||.++..+.- +
T Consensus 227 i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T--------------~nl~~~~r~ADIVIsAvGkp~~----i 288 (364)
T PLN02616 227 VEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------KNPEEITREADIIISAVGQPNM----V 288 (364)
T ss_pred CCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCC--------------CCHHHHHhhCCEEEEcCCCcCc----C
Confidence 3488999999997 5589999999999999999986532 2677888999999999986643 3
Q ss_pred cccccccccCCCCCEEEeccCC
Q 018213 146 CGKHGAASGMGPGKGYVDVSTV 167 (359)
Q Consensus 146 ~~~~~~~~~l~~~~~vi~~s~~ 167 (359)
+ .+++++|+++||++..
T Consensus 289 --~---~d~vK~GAvVIDVGIn 305 (364)
T PLN02616 289 --R---GSWIKPGAVVIDVGIN 305 (364)
T ss_pred --C---HHHcCCCCEEEecccc
Confidence 1 2357899999999643
No 284
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=97.44 E-value=0.00027 Score=65.04 Aligned_cols=62 Identities=18% Similarity=0.222 Sum_probs=45.5
Q ss_pred cCCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEe
Q 018213 68 DELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAM 134 (359)
Q Consensus 68 ~~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~ 134 (359)
++.+++|.|||+|.||..+++.|.+.|. +|++++|+.... .+.+.. ....+...++||||.|
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~-~~~~~~----~~~~~~~~~~DvVIs~ 233 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTL-PYRTVV----REELSFQDPYDVIFFG 233 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCcccc-chhhhh----hhhhhcccCCCEEEEc
Confidence 3778999999999999999999999995 699999987531 111100 0111345689999986
No 285
>PRK09414 glutamate dehydrogenase; Provisional
Probab=97.42 E-value=0.0008 Score=64.42 Aligned_cols=113 Identities=14% Similarity=0.156 Sum_probs=69.7
Q ss_pred ccCCCCeEEEEcCChhhHHHHHHHHHCCCcEEEE-cC----------CccchhHHHhC------------CCccCCCHHH
Q 018213 67 ADELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVW-NR----------TKSKCDPLISL------------GAKYQPSPDE 123 (359)
Q Consensus 67 ~~~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~-d~----------~~~~~~~~~~~------------g~~~~~~~~~ 123 (359)
.+++++||+|.|+|++|+.+|+.|.+.|.+|+++ |. +.+.+....+. +.... +.++
T Consensus 228 ~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i-~~~~ 306 (445)
T PRK09414 228 DSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYL-EGGS 306 (445)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeec-CCcc
Confidence 3478899999999999999999999999998876 62 22222222111 11111 3333
Q ss_pred Hhh-cCCEEEEeeCChhHHHHHhcccccccccCCCCC-EEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213 124 VAA-SCDVTFAMLADPESAMDVACGKHGAASGMGPGK-GYVDVSTVDGDTSKLINGHIKATGASFLE 188 (359)
Q Consensus 124 ~~~-~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~-~vi~~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (359)
++. +|||++-|.....-+.+.. ..+. ++++ +|+-.++++. +.+..+.|.++|+.+++
T Consensus 307 i~~~d~DVliPaAl~n~It~~~a---~~i~---~~~akiIvEgAN~p~--t~~A~~~L~~rGI~~vP 365 (445)
T PRK09414 307 PWSVPCDIALPCATQNELDEEDA---KTLI---ANGVKAVAEGANMPS--TPEAIEVFLEAGVLFAP 365 (445)
T ss_pred ccccCCcEEEecCCcCcCCHHHH---HHHH---HcCCeEEEcCCCCCC--CHHHHHHHHHCCcEEEC
Confidence 333 7999999886444333333 2221 1233 4555555544 34566788899988875
No 286
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.42 E-value=0.002 Score=62.84 Aligned_cols=117 Identities=21% Similarity=0.267 Sum_probs=70.0
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccch-----hHHHhCCCccC--CCHHHHhhcCCEEEEeeCC---h
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKC-----DPLISLGAKYQ--PSPDEVAASCDVTFAMLAD---P 138 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~-----~~~~~~g~~~~--~~~~~~~~~aDivi~~~p~---~ 138 (359)
+.+++|+|+|+|..|.++|+.|.+.|++|+++|+++... +.+.+.|+... ....+.+.++|+||....- .
T Consensus 12 ~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~Spgi~~~~ 91 (458)
T PRK01710 12 IKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKTPSMRIDS 91 (458)
T ss_pred hcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEECCCCCCCc
Confidence 556889999999999999999999999999999865321 23555576553 2223445789999886311 1
Q ss_pred hHHHHHhc------ccccccccCCCCCEE-EeccCCChHHHHHHHHHHHhcCCe
Q 018213 139 ESAMDVAC------GKHGAASGMGPGKGY-VDVSTVDGDTSKLINGHIKATGAS 185 (359)
Q Consensus 139 ~~~~~~~~------~~~~~~~~l~~~~~v-i~~s~~~~~~~~~l~~~l~~~~~~ 185 (359)
+....... +..+++....+..+| |.-|.|+..+..-+...|...+..
T Consensus 92 p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~g~~ 145 (458)
T PRK01710 92 PELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEEGYK 145 (458)
T ss_pred hHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhCCCC
Confidence 22222210 011111122222344 433556666666666777665543
No 287
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.40 E-value=0.00079 Score=60.49 Aligned_cols=79 Identities=22% Similarity=0.305 Sum_probs=62.0
Q ss_pred ccCCCCeEEEEcCC-hhhHHHHHHHHHC----CCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHH
Q 018213 67 ADELPGRIGFLGMG-IMGTPMAQNLLKA----GCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESA 141 (359)
Q Consensus 67 ~~~~~~~igiiG~G-~iG~~ia~~l~~~----g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~ 141 (359)
.+++++++.|||-+ .+|+.++..|... +..|+++.... .++.+.+++|||||.+++.+.
T Consensus 149 i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~T--------------~~l~~~~~~ADIvV~AvG~p~-- 212 (287)
T PRK14181 149 IPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQS--------------ENLTEILKTADIIIAAIGVPL-- 212 (287)
T ss_pred CCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCCcC--
Confidence 34889999999975 5899999999988 78899886532 257788899999999998663
Q ss_pred HHHhcccccccccCCCCCEEEeccCCC
Q 018213 142 MDVACGKHGAASGMGPGKGYVDVSTVD 168 (359)
Q Consensus 142 ~~~~~~~~~~~~~l~~~~~vi~~s~~~ 168 (359)
++ . .+++++|+++||++...
T Consensus 213 --~i--~---~~~ik~GavVIDvGin~ 232 (287)
T PRK14181 213 --FI--K---EEMIAEKAVIVDVGTSR 232 (287)
T ss_pred --cc--C---HHHcCCCCEEEEecccc
Confidence 23 1 23578999999997543
No 288
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.38 E-value=0.00063 Score=62.52 Aligned_cols=87 Identities=20% Similarity=0.218 Sum_probs=57.4
Q ss_pred CCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCC------CHHHHhhcCCEEEEeeCChhHHHH
Q 018213 70 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQP------SPDEVAASCDVTFAMLADPESAMD 143 (359)
Q Consensus 70 ~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~------~~~~~~~~aDivi~~~p~~~~~~~ 143 (359)
.+.+|+|+|+|.+|..-.+.++..|.+|+++|+++++.+...+.|...+- ..+++-+.+|+++.++| +.....
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~~~~~~ 244 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-PATLEP 244 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-hhhHHH
Confidence 46889999999999999999999999999999999887766665543211 11122122677776665 444333
Q ss_pred HhcccccccccCCCCCEEEec
Q 018213 144 VACGKHGAASGMGPGKGYVDV 164 (359)
Q Consensus 144 ~~~~~~~~~~~l~~~~~vi~~ 164 (359)
.+ ..++++..++-+
T Consensus 245 ~l-------~~l~~~G~~v~v 258 (339)
T COG1064 245 SL-------KALRRGGTLVLV 258 (339)
T ss_pred HH-------HHHhcCCEEEEE
Confidence 33 344555554444
No 289
>PLN02477 glutamate dehydrogenase
Probab=97.37 E-value=0.00094 Score=63.39 Aligned_cols=110 Identities=18% Similarity=0.219 Sum_probs=68.8
Q ss_pred cCCCCeEEEEcCChhhHHHHHHHHHCCCcEE-EEcCC----------ccchhHHHhC--------CCccCCCHHHH-hhc
Q 018213 68 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVT-VWNRT----------KSKCDPLISL--------GAKYQPSPDEV-AAS 127 (359)
Q Consensus 68 ~~~~~~igiiG~G~iG~~ia~~l~~~g~~V~-~~d~~----------~~~~~~~~~~--------g~~~~~~~~~~-~~~ 127 (359)
++++++|+|.|+|++|+.+|+.|.+.|.+|+ +.|.+ .+.+....+. +.... +.+++ ..+
T Consensus 203 ~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i-~~~e~l~~~ 281 (410)
T PLN02477 203 SIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPI-DPDDILVEP 281 (410)
T ss_pred CccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEe-cCccceecc
Confidence 4788999999999999999999999999988 55654 2222121111 11112 22333 347
Q ss_pred CCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213 128 CDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (359)
Q Consensus 128 aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (359)
|||++-|.- . ..| +++-.+.+ +=.+|+-.++++. + .+..+.|.++|+.+++
T Consensus 282 ~DvliP~Al-~----~~I--~~~na~~i-~ak~I~egAN~p~-t-~ea~~~L~~rGI~~~P 332 (410)
T PLN02477 282 CDVLIPAAL-G----GVI--NKENAADV-KAKFIVEAANHPT-D-PEADEILRKKGVVVLP 332 (410)
T ss_pred ccEEeeccc-c----ccC--CHhHHHHc-CCcEEEeCCCCCC-C-HHHHHHHHHCCcEEEC
Confidence 999987752 2 233 23333334 2345665556555 3 3566888899988875
No 290
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.37 E-value=0.00031 Score=53.51 Aligned_cols=72 Identities=21% Similarity=0.171 Sum_probs=48.1
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCcc-CCCHHHHhhcCCEEEEeeCChhHHHHHh
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY-QPSPDEVAASCDVTFAMLADPESAMDVA 145 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~-~~~~~~~~~~aDivi~~~p~~~~~~~~~ 145 (359)
+++++|.|||.|.+|..=++.|.+.|.+|+++++.. . ..+..++. ....++.+.++|+|+.+++ ++.+...+
T Consensus 5 l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~---~-~~~~~i~~~~~~~~~~l~~~~lV~~at~-d~~~n~~i 77 (103)
T PF13241_consen 5 LKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI---E-FSEGLIQLIRREFEEDLDGADLVFAATD-DPELNEAI 77 (103)
T ss_dssp -TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE---H-HHHTSCEEEESS-GGGCTTESEEEE-SS--HHHHHHH
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch---h-hhhhHHHHHhhhHHHHHhhheEEEecCC-CHHHHHHH
Confidence 778999999999999999999999999999999875 1 11122221 1123345678899998885 44444444
No 291
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.37 E-value=0.0019 Score=63.01 Aligned_cols=66 Identities=14% Similarity=0.190 Sum_probs=49.1
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEe
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAM 134 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~ 134 (359)
+++++|.|||.|..|.+.|+.|.+.|++|.++|..+.....+.+.|+.......+-+.++|+||..
T Consensus 7 ~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~s 72 (460)
T PRK01390 7 FAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLS 72 (460)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEEC
Confidence 556789999999999999999999999999999765444444555665432222334678988863
No 292
>PF10728 DUF2520: Domain of unknown function (DUF2520); InterPro: IPR018931 This presumed domain is found C-terminal to a Rossmann-like domain suggesting that these proteins are oxidoreductases. ; PDB: 3D1L_A 2I76_A 3DFU_A.
Probab=97.37 E-value=0.0018 Score=51.49 Aligned_cols=126 Identities=13% Similarity=0.126 Sum_probs=78.6
Q ss_pred EEecCCHHHHHHHHHHHHHhCCCeEEeCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccccch
Q 018213 205 FLAAGDKSLYNTVAPLLDIMGKSRFYLGDVGNGAAMKLVVNMIMGSMMATFSEGLLHSEKVGLDPNVLVEVVSQGAISAP 284 (359)
Q Consensus 205 ~~~~g~~~~~~~v~~ll~~lg~~~~~~g~~~~~~~~kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~~~~~~~~s~ 284 (359)
+.+.++++..+.+..++..+|.+++.+.... -.....+.-+..+....++..+..++++.|++.++..+++. |
T Consensus 4 ~~iEgd~~~~~~l~~l~~~lg~~~~~i~~~~-r~~yHaAav~asNf~~~L~~~a~~ll~~~gi~~~~a~~~L~------P 76 (132)
T PF10728_consen 4 FAIEGDEEALEVLQELAKELGGRPFEIDSEQ-RALYHAAAVFASNFLVALYALAAELLEQAGIDFEEALEALL------P 76 (132)
T ss_dssp EEEEESHHHHHHHHHHHHHTTSEEEE--GGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SHHH--HHHH------H
T ss_pred EEEecCHHHHHHHHHHHHHhCCceEEeCHHh-HHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCchhHHHHHH------H
Confidence 3445599999999999999999999886644 45555555555566666777888889999999977665554 4
Q ss_pred hhhhcccccccCCCCCCcchhHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 018213 285 MYSLKGPSMIESLYPTAFPLKHQQKDLRLALGLAESVSQSTPIAAAANELYKV 337 (359)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~ 337 (359)
+.+.....+.+.......|.+..+.|.+.+.+..+...-..|-...+++.+..
T Consensus 77 Li~~t~~n~~~~g~~~alTGP~~RgD~~Tv~kHl~~L~~~~p~~~~lY~~ls~ 129 (132)
T PF10728_consen 77 LIRETLENILQLGPADALTGPAARGDIGTVAKHLAALDDHDPELKELYRALSR 129 (132)
T ss_dssp HHHHHHHHHHHS-HHHH--SCCHCTHHHHHHHHHHHCCCH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCchhccCCCcccCCHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 44443444433332233455666778888888887765533555555554443
No 293
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=97.36 E-value=0.0017 Score=57.47 Aligned_cols=111 Identities=18% Similarity=0.187 Sum_probs=67.0
Q ss_pred cCCCCeEEEEcCChhhHHHHHHHHHCCCcEE-EEcCC-----cc-----chhH---HHh-CC------------CccCCC
Q 018213 68 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVT-VWNRT-----KS-----KCDP---LIS-LG------------AKYQPS 120 (359)
Q Consensus 68 ~~~~~~igiiG~G~iG~~ia~~l~~~g~~V~-~~d~~-----~~-----~~~~---~~~-~g------------~~~~~~ 120 (359)
+++++||.|.|+|++|+..|+.|.+.|.+|+ +.|.+ ++ .+.. ..+ .+ .+.. +
T Consensus 35 ~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~-~ 113 (254)
T cd05313 35 TLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYF-E 113 (254)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEe-C
Confidence 3788999999999999999999999999988 55521 11 1111 011 11 2222 3
Q ss_pred HHHHh-hcCCEEEEeeCChhHHHHHhcccccccccCC-CCC-EEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213 121 PDEVA-ASCDVTFAMLADPESAMDVACGKHGAASGMG-PGK-GYVDVSTVDGDTSKLINGHIKATGASFLE 188 (359)
Q Consensus 121 ~~~~~-~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~-~~~-~vi~~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (359)
.++++ .+|||++-|.- ..++ +.+-.+.++ .++ +|+..+++ |.+. +..+.|.++|+.+++
T Consensus 114 ~~~~~~~~~DIliPcAl-----~~~I--~~~na~~i~~~~ak~I~EgAN~-p~t~-~a~~~L~~rGI~vvP 175 (254)
T cd05313 114 GKKPWEVPCDIAFPCAT-----QNEV--DAEDAKLLVKNGCKYVAEGANM-PCTA-EAIEVFRQAGVLFAP 175 (254)
T ss_pred CcchhcCCCcEEEeccc-----cccC--CHHHHHHHHHcCCEEEEeCCCC-CCCH-HHHHHHHHCCcEEEC
Confidence 33433 47999987752 3333 233333442 233 45544444 4444 567888899988875
No 294
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=97.36 E-value=0.00045 Score=65.58 Aligned_cols=73 Identities=18% Similarity=0.200 Sum_probs=51.6
Q ss_pred CeEEEEcCChhhHHH-HHHHHHCCCcEEEEcCCccchhHHHhCCCc---c---------------C--CCHHH---Hhhc
Q 018213 72 GRIGFLGMGIMGTPM-AQNLLKAGCDVTVWNRTKSKCDPLISLGAK---Y---------------Q--PSPDE---VAAS 127 (359)
Q Consensus 72 ~~igiiG~G~iG~~i-a~~l~~~g~~V~~~d~~~~~~~~~~~~g~~---~---------------~--~~~~~---~~~~ 127 (359)
|||.++|+|+||+++ +..|.+.|++|+++|+++..++.+.++|.. . . .+.++ .+.+
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~ 80 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDALNKRKSYQVIVVGENEQVETVSNVSAINSADEEAVIEAIAE 80 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCHHHHHHHhcC
Confidence 679999999999955 888899999999999887777777665531 0 1 02122 3347
Q ss_pred CCEEEEeeCChhHHHHHh
Q 018213 128 CDVTFAMLADPESAMDVA 145 (359)
Q Consensus 128 aDivi~~~p~~~~~~~~~ 145 (359)
+|+|++++ .+..++.+.
T Consensus 81 ~dlvt~~v-~~~~~~s~~ 97 (381)
T PRK02318 81 ADLVTTAV-GPNILPFIA 97 (381)
T ss_pred CCEEEeCC-CcccchhHH
Confidence 89998888 444444443
No 295
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=97.34 E-value=0.0013 Score=60.44 Aligned_cols=63 Identities=17% Similarity=0.209 Sum_probs=47.1
Q ss_pred EEEEcCChhhHHHHHHHHHCC--CcEEEEcCCccchhHHHhC---------CCcc--CCCHHHHhhcCCEEEEeeCC
Q 018213 74 IGFLGMGIMGTPMAQNLLKAG--CDVTVWNRTKSKCDPLISL---------GAKY--QPSPDEVAASCDVTFAMLAD 137 (359)
Q Consensus 74 igiiG~G~iG~~ia~~l~~~g--~~V~~~d~~~~~~~~~~~~---------g~~~--~~~~~~~~~~aDivi~~~p~ 137 (359)
|+|||+|.+|..+|..++..| .++.++|++.++.+..... .... ..+ .+.+++||+||++...
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~ 76 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGA 76 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCC
Confidence 589999999999999999888 5899999988765443321 0111 234 4577899999999864
No 296
>PLN02602 lactate dehydrogenase
Probab=97.34 E-value=0.0011 Score=61.92 Aligned_cols=64 Identities=16% Similarity=0.244 Sum_probs=46.8
Q ss_pred CeEEEEcCChhhHHHHHHHHHCCC--cEEEEcCCccchhHHHh----C-----CCccC--CCHHHHhhcCCEEEEeeC
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLIS----L-----GAKYQ--PSPDEVAASCDVTFAMLA 136 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~g~--~V~~~d~~~~~~~~~~~----~-----g~~~~--~~~~~~~~~aDivi~~~p 136 (359)
+||+|||+|++|..+|..+...|. ++.++|+++++.+...- . ..... .+.++ +++||+||++.-
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~~-~~daDiVVitAG 114 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYAV-TAGSDLCIVTAG 114 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHHH-hCCCCEEEECCC
Confidence 699999999999999999988775 79999998765432221 0 12222 34444 789999999863
No 297
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=97.33 E-value=0.0026 Score=51.51 Aligned_cols=113 Identities=17% Similarity=0.183 Sum_probs=67.7
Q ss_pred eEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhC--------CCccCCCHHHHhh--cCCEEEEeeCChhHH
Q 018213 73 RIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL--------GAKYQPSPDEVAA--SCDVTFAMLADPESA 141 (359)
Q Consensus 73 ~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~--------g~~~~~~~~~~~~--~aDivi~~~p~~~~~ 141 (359)
+|.|||+|.+|..+++.|...|. +++++|.+.-....+..+ |-.......+.++ ..++-+...+.....
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~ 80 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE 80 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence 48999999999999999999997 699999764333322211 2222212222222 123433333221111
Q ss_pred HHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCC
Q 018213 142 MDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG 193 (359)
Q Consensus 142 ~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 193 (359)
.. ....+++-.++|++... ......+.+.+++.++.++++...+
T Consensus 81 ~~-------~~~~~~~~diVi~~~d~-~~~~~~l~~~~~~~~i~~i~~~~~g 124 (143)
T cd01483 81 DN-------LDDFLDGVDLVIDAIDN-IAVRRALNRACKELGIPVIDAGGLG 124 (143)
T ss_pred hh-------HHHHhcCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 10 01234566788877655 5556678888888899998877665
No 298
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=97.33 E-value=0.00074 Score=63.80 Aligned_cols=96 Identities=18% Similarity=0.151 Sum_probs=62.3
Q ss_pred CCCCeEEEEcC-ChhhHHHHHHHHHC-CCcEEEEcCCccchhHHHhCC-------CccCCCHH-HHhhcCCEEEEeeCCh
Q 018213 69 ELPGRIGFLGM-GIMGTPMAQNLLKA-GCDVTVWNRTKSKCDPLISLG-------AKYQPSPD-EVAASCDVTFAMLADP 138 (359)
Q Consensus 69 ~~~~~igiiG~-G~iG~~ia~~l~~~-g~~V~~~d~~~~~~~~~~~~g-------~~~~~~~~-~~~~~aDivi~~~p~~ 138 (359)
...+||+|+|+ |.+|+.+.+.|... +++|..+.++...-+.+.... .....+.+ +.++++|+|++++| .
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp-~ 114 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLP-H 114 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCC-H
Confidence 34579999997 99999999999987 678888766543322222111 11111222 22478999999997 4
Q ss_pred hHHHHHhcccccccccCCCCCEEEeccCCChHHH
Q 018213 139 ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTS 172 (359)
Q Consensus 139 ~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~ 172 (359)
....+++ +. +..|..|||.|...-.+.
T Consensus 115 ~~s~~i~---~~----~~~g~~VIDlSs~fRl~~ 141 (381)
T PLN02968 115 GTTQEII---KA----LPKDLKIVDLSADFRLRD 141 (381)
T ss_pred HHHHHHH---HH----HhCCCEEEEcCchhccCC
Confidence 4555555 33 346889999986654433
No 299
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.32 E-value=0.0018 Score=63.66 Aligned_cols=67 Identities=15% Similarity=0.147 Sum_probs=51.7
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCC--CHHHHhhcCCEEEEee
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQP--SPDEVAASCDVTFAML 135 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~--~~~~~~~~aDivi~~~ 135 (359)
..+++|.|+|+|..|.+.++.|...|++|+++|+.+...+.+.+.|+.... ...+.++++|+||.+-
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~Sp 78 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSP 78 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECC
Confidence 345789999999999999999999999999999876555555555765432 2345567899988865
No 300
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=97.31 E-value=0.0005 Score=51.66 Aligned_cols=72 Identities=25% Similarity=0.288 Sum_probs=52.5
Q ss_pred CeEEEEcCChhhHHHHHHH-HHCCCc-EEEEcCCccchhHHHhCCCccCCCHHHHhhc--CCEEEEeeCChhHHHHHh
Q 018213 72 GRIGFLGMGIMGTPMAQNL-LKAGCD-VTVWNRTKSKCDPLISLGAKYQPSPDEVAAS--CDVTFAMLADPESAMDVA 145 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l-~~~g~~-V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~--aDivi~~~p~~~~~~~~~ 145 (359)
.++.|+|+|++|++++..+ ...|+. +.++|.++++..... .|+....+.+++.+. .|+-++++| +....+++
T Consensus 4 ~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i-~gipV~~~~~~l~~~~~i~iaii~VP-~~~a~~~~ 79 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEI-GGIPVYGSMDELEEFIEIDIAIITVP-AEAAQEVA 79 (96)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEE-TTEEEESSHHHHHHHCTTSEEEEES--HHHHHHHH
T ss_pred CeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEE-CCEEeeccHHHhhhhhCCCEEEEEcC-HHHHHHHH
Confidence 5699999999999998644 456766 456888887544211 266777788888776 999999998 56666666
No 301
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=97.31 E-value=0.00073 Score=62.19 Aligned_cols=65 Identities=20% Similarity=0.303 Sum_probs=46.1
Q ss_pred CeEEEEcC-ChhhHHHHHHHHHCCC--cEEEEcCCc--cchhH----HHh----CC----CccCCCHHHHhhcCCEEEEe
Q 018213 72 GRIGFLGM-GIMGTPMAQNLLKAGC--DVTVWNRTK--SKCDP----LIS----LG----AKYQPSPDEVAASCDVTFAM 134 (359)
Q Consensus 72 ~~igiiG~-G~iG~~ia~~l~~~g~--~V~~~d~~~--~~~~~----~~~----~g----~~~~~~~~~~~~~aDivi~~ 134 (359)
|||+|+|+ |.+|..++..|...|+ +|.++|+++ ++.+. +.+ .+ +....+.+ .+++||+||++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~~-~l~~aDiViit 79 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDLS-DVAGSDIVIIT 79 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCHH-HhCCCCEEEEe
Confidence 68999997 9999999999999886 499999954 33221 111 11 11233444 58999999999
Q ss_pred eCC
Q 018213 135 LAD 137 (359)
Q Consensus 135 ~p~ 137 (359)
...
T Consensus 80 ag~ 82 (309)
T cd05294 80 AGV 82 (309)
T ss_pred cCC
Confidence 853
No 302
>PRK06270 homoserine dehydrogenase; Provisional
Probab=97.30 E-value=0.0008 Score=62.85 Aligned_cols=114 Identities=19% Similarity=0.139 Sum_probs=66.9
Q ss_pred CeEEEEcCChhhHHHHHHHHHC----------CCcEE-EEcCCcc----------chhHHHhC-CC-c------cCCCHH
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKA----------GCDVT-VWNRTKS----------KCDPLISL-GA-K------YQPSPD 122 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~----------g~~V~-~~d~~~~----------~~~~~~~~-g~-~------~~~~~~ 122 (359)
.+|+|+|+|+||+.+++.+... +.+|. ++|++.. +...+.+. +. . ...+++
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL 82 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence 5799999999999999998765 35544 5565321 11111111 21 1 124778
Q ss_pred HHhh--cCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCCh-HHHHHHHHHHHhcCCeee
Q 018213 123 EVAA--SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDG-DTSKLINGHIKATGASFL 187 (359)
Q Consensus 123 ~~~~--~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~-~~~~~l~~~l~~~~~~~~ 187 (359)
+++. +.|+|+.|+|...+..+.. .+-....+..|..||....... ...+++.+..++.+..+.
T Consensus 83 ell~~~~~DvVvd~T~s~~~~~~~a--~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~~ 148 (341)
T PRK06270 83 EVIRSVDADVVVEATPTNIETGEPA--LSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVRFR 148 (341)
T ss_pred HHhhccCCCEEEECCcCcccccchH--HHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEEE
Confidence 8874 5799999998543321111 0112345678888885432221 234567777777776554
No 303
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.27 E-value=0.0013 Score=59.45 Aligned_cols=78 Identities=18% Similarity=0.299 Sum_probs=61.2
Q ss_pred ccCCCCeEEEEcC-ChhhHHHHHHHHHC----CCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHH
Q 018213 67 ADELPGRIGFLGM-GIMGTPMAQNLLKA----GCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESA 141 (359)
Q Consensus 67 ~~~~~~~igiiG~-G~iG~~ia~~l~~~----g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~ 141 (359)
.++.+++|.|||- ..+|+.++..|... +..|+++.+.. .++.+.+++|||||.++..+.-
T Consensus 157 i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~T--------------~~l~~~~~~ADIvVsAvGkp~~- 221 (297)
T PRK14168 157 VETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRS--------------KNLARHCQRADILIVAAGVPNL- 221 (297)
T ss_pred CCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCCC--------------cCHHHHHhhCCEEEEecCCcCc-
Confidence 3488999999997 56899999999987 68898886432 2577888999999999976542
Q ss_pred HHHhcccccccccCCCCCEEEeccCC
Q 018213 142 MDVACGKHGAASGMGPGKGYVDVSTV 167 (359)
Q Consensus 142 ~~~~~~~~~~~~~l~~~~~vi~~s~~ 167 (359)
+ + .+++++|+++||++..
T Consensus 222 ---i--~---~~~ik~gavVIDvGin 239 (297)
T PRK14168 222 ---V--K---PEWIKPGATVIDVGVN 239 (297)
T ss_pred ---c--C---HHHcCCCCEEEecCCC
Confidence 3 1 2357899999999754
No 304
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.26 E-value=0.0013 Score=59.20 Aligned_cols=78 Identities=29% Similarity=0.422 Sum_probs=61.2
Q ss_pred ccCCCCeEEEEcCC-hhhHHHHHHHHHC----CCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHH
Q 018213 67 ADELPGRIGFLGMG-IMGTPMAQNLLKA----GCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESA 141 (359)
Q Consensus 67 ~~~~~~~igiiG~G-~iG~~ia~~l~~~----g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~ 141 (359)
.++.++++.|||-+ .+|+.++..|... +..|+++.... .++.+..++|||||.+++.+.-
T Consensus 153 i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T--------------~nl~~~~~~ADIvIsAvGkp~~- 217 (293)
T PRK14185 153 IETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS--------------KNLKKECLEADIIIAALGQPEF- 217 (293)
T ss_pred CCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC--------------CCHHHHHhhCCEEEEccCCcCc-
Confidence 34889999999985 5899999999987 57899886432 2677888999999999986643
Q ss_pred HHHhcccccccccCCCCCEEEeccCC
Q 018213 142 MDVACGKHGAASGMGPGKGYVDVSTV 167 (359)
Q Consensus 142 ~~~~~~~~~~~~~l~~~~~vi~~s~~ 167 (359)
+ . .+++++|+++||++..
T Consensus 218 ---i--~---~~~vk~gavVIDvGin 235 (293)
T PRK14185 218 ---V--K---ADMVKEGAVVIDVGTT 235 (293)
T ss_pred ---c--C---HHHcCCCCEEEEecCc
Confidence 3 1 2457899999999754
No 305
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=97.26 E-value=0.00034 Score=53.63 Aligned_cols=82 Identities=12% Similarity=0.068 Sum_probs=57.4
Q ss_pred hhHHHHHHHHHCCCcEEEEcCCccchhHHH---hCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCC
Q 018213 82 MGTPMAQNLLKAGCDVTVWNRTKSKCDPLI---SLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPG 158 (359)
Q Consensus 82 iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~---~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~ 158 (359)
-+..+++.|.+.|.+|.+||+.-....... ..++...+++++.++.+|+|+++++.+ +.+.+- -+++...|+++
T Consensus 18 p~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~-~f~~l~--~~~~~~~~~~~ 94 (106)
T PF03720_consen 18 PALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDHD-EFRELD--WEEIAKLMRKP 94 (106)
T ss_dssp HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS--G-GGGCCG--HHHHHHHSCSS
T ss_pred HHHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecCH-HHhccC--HHHHHHhcCCC
Confidence 367889999999999999999765543333 146777889999999999999999644 444321 14455667788
Q ss_pred CEEEeccC
Q 018213 159 KGYVDVST 166 (359)
Q Consensus 159 ~~vi~~s~ 166 (359)
.+|+|+-+
T Consensus 95 ~~iiD~~~ 102 (106)
T PF03720_consen 95 PVIIDGRN 102 (106)
T ss_dssp EEEEESSS
T ss_pred CEEEECcc
Confidence 89998743
No 306
>PRK06392 homoserine dehydrogenase; Provisional
Probab=97.25 E-value=0.00072 Score=62.45 Aligned_cols=113 Identities=15% Similarity=0.094 Sum_probs=64.9
Q ss_pred CeEEEEcCChhhHHHHHHHHHC--------CCcEE-EEcCCccch-------hHH---HhCC-C--ccCC--CHHHHh-h
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKA--------GCDVT-VWNRTKSKC-------DPL---ISLG-A--KYQP--SPDEVA-A 126 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~--------g~~V~-~~d~~~~~~-------~~~---~~~g-~--~~~~--~~~~~~-~ 126 (359)
|+|+|+|+|++|+.+++.|.+. +.+|. ++|++.... +.+ .+.| + .... +.++++ .
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~ 80 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEI 80 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcC
Confidence 4799999999999999999773 34543 456543211 111 1111 1 1112 455554 3
Q ss_pred cCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChH-HHHHHHHHHHhcCCeee
Q 018213 127 SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGD-TSKLINGHIKATGASFL 187 (359)
Q Consensus 127 ~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~-~~~~l~~~l~~~~~~~~ 187 (359)
++|+|+-|+|....-.... .-+.+.++.|..+|..+-+... ...++.+..++++..+.
T Consensus 81 ~~DVvVE~t~~~~~g~~~~---~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~~~ 139 (326)
T PRK06392 81 KPDVIVDVTPASKDGIREK---NLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRIIR 139 (326)
T ss_pred CCCEEEECCCCCCcCchHH---HHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCeEE
Confidence 6899999997432111111 2224567788888866544332 34566666666666554
No 307
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=97.25 E-value=0.0021 Score=64.88 Aligned_cols=74 Identities=22% Similarity=0.411 Sum_probs=57.9
Q ss_pred CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccC---CCHHHHh-----hcCCEEEEeeCChhHHHH
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQ---PSPDEVA-----ASCDVTFAMLADPESAMD 143 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~---~~~~~~~-----~~aDivi~~~p~~~~~~~ 143 (359)
.+|-|+|+|++|+.+++.|.+.|+++++.|.++++++.+++.|.... .+-.+++ +++|.+++++++++....
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~~ 480 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSLQ 480 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHHH
Confidence 67999999999999999999999999999999999888887765431 1222333 479999999976655555
Q ss_pred Hh
Q 018213 144 VA 145 (359)
Q Consensus 144 ~~ 145 (359)
+.
T Consensus 481 i~ 482 (621)
T PRK03562 481 LV 482 (621)
T ss_pred HH
Confidence 54
No 308
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=97.25 E-value=0.0019 Score=61.86 Aligned_cols=126 Identities=22% Similarity=0.201 Sum_probs=76.7
Q ss_pred CCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccch----hHHHhCCCccCC--CHHHHhhcCCEEEEee--C-ChhH
Q 018213 70 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKC----DPLISLGAKYQP--SPDEVAASCDVTFAML--A-DPES 140 (359)
Q Consensus 70 ~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~----~~~~~~g~~~~~--~~~~~~~~aDivi~~~--p-~~~~ 140 (359)
.+|+|.|+|+|.-|.++++.|.+.|++|+++|.++... ......++.... ...+...++|+|+..- | ..+.
T Consensus 6 ~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi~~~~p~ 85 (448)
T COG0771 6 QGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGIPPTHPL 85 (448)
T ss_pred cCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCCCCCCCHH
Confidence 37999999999999999999999999999999766541 112223443321 1224567899999864 2 2222
Q ss_pred HHHHhc------ccccccccC--CCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCC
Q 018213 141 AMDVAC------GKHGAASGM--GPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSK 195 (359)
Q Consensus 141 ~~~~~~------~~~~~~~~l--~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 195 (359)
+..... ++-+++... ...-+-|.-++|+..++.-+...++..|....-+..+|.+
T Consensus 86 v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p 148 (448)
T COG0771 86 VEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTP 148 (448)
T ss_pred HHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCcc
Confidence 222210 111223232 1223344446677777777778888877655555444444
No 309
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.24 E-value=0.0046 Score=60.11 Aligned_cols=115 Identities=21% Similarity=0.133 Sum_probs=69.1
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccc----hhHHHhCCCccC--CCHHHHhhc-CCEEEEee--CC-h
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK----CDPLISLGAKYQ--PSPDEVAAS-CDVTFAML--AD-P 138 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~----~~~~~~~g~~~~--~~~~~~~~~-aDivi~~~--p~-~ 138 (359)
+++++|.|+|.|.+|.++|+.|++.|++|.++|++... .+.+.+.|+... ....+++.. .|+||... |. .
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~~~~ 82 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNPGIPYTN 82 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECCCCCCCC
Confidence 55688999999999999999999999999999976532 133444565543 233444444 89888755 22 2
Q ss_pred hHHHHHhc------ccccccccCCCCC-EEEeccCCChHHHHHHHHHHHhcC
Q 018213 139 ESAMDVAC------GKHGAASGMGPGK-GYVDVSTVDGDTSKLINGHIKATG 183 (359)
Q Consensus 139 ~~~~~~~~------~~~~~~~~l~~~~-~vi~~s~~~~~~~~~l~~~l~~~~ 183 (359)
+....... +..++...+.+.. +-|.-|.|+..+..-+...|+..+
T Consensus 83 ~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~g 134 (447)
T PRK02472 83 PMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAGG 134 (447)
T ss_pred HHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHCC
Confidence 22222210 1112222222323 344445666666666667776654
No 310
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.22 E-value=0.0012 Score=61.04 Aligned_cols=67 Identities=13% Similarity=0.168 Sum_probs=47.0
Q ss_pred CCeEEEEcC-ChhhHHHHHHHHHCCC-------cEEEEcCCccc--hhH----HHhC------CCccCCCHHHHhhcCCE
Q 018213 71 PGRIGFLGM-GIMGTPMAQNLLKAGC-------DVTVWNRTKSK--CDP----LISL------GAKYQPSPDEVAASCDV 130 (359)
Q Consensus 71 ~~~igiiG~-G~iG~~ia~~l~~~g~-------~V~~~d~~~~~--~~~----~~~~------g~~~~~~~~~~~~~aDi 130 (359)
++||+|||+ |.+|..+|..|...|. ++.++|.+... ++. +.+. .+....+..+.+++||+
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDi 81 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADW 81 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCE
Confidence 468999999 9999999999987775 79999985432 211 1110 12233455577899999
Q ss_pred EEEeeCC
Q 018213 131 TFAMLAD 137 (359)
Q Consensus 131 vi~~~p~ 137 (359)
||++.-.
T Consensus 82 vvitaG~ 88 (322)
T cd01338 82 ALLVGAK 88 (322)
T ss_pred EEEeCCC
Confidence 9998743
No 311
>PRK05086 malate dehydrogenase; Provisional
Probab=97.21 E-value=0.0034 Score=57.83 Aligned_cols=66 Identities=20% Similarity=0.285 Sum_probs=45.7
Q ss_pred CeEEEEcC-ChhhHHHHHHHHH---CCCcEEEEcCCccch---hHHHhCC--Ccc----CCCHHHHhhcCCEEEEeeCC
Q 018213 72 GRIGFLGM-GIMGTPMAQNLLK---AGCDVTVWNRTKSKC---DPLISLG--AKY----QPSPDEVAASCDVTFAMLAD 137 (359)
Q Consensus 72 ~~igiiG~-G~iG~~ia~~l~~---~g~~V~~~d~~~~~~---~~~~~~g--~~~----~~~~~~~~~~aDivi~~~p~ 137 (359)
|||+|||+ |.+|++++..+.. .++++.++|+++... -.+.+.+ ... .+++.+.++++|+||+|.-.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~ 79 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGV 79 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCC
Confidence 68999999 9999999988844 346899999875431 1222211 111 24556778899999998843
No 312
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=97.21 E-value=0.0021 Score=59.43 Aligned_cols=66 Identities=15% Similarity=0.250 Sum_probs=46.7
Q ss_pred CCeEEEEcC-ChhhHHHHHHHHHCCC-------cEEEEcCCcc--chhHHH----hC------CCccCCCHHHHhhcCCE
Q 018213 71 PGRIGFLGM-GIMGTPMAQNLLKAGC-------DVTVWNRTKS--KCDPLI----SL------GAKYQPSPDEVAASCDV 130 (359)
Q Consensus 71 ~~~igiiG~-G~iG~~ia~~l~~~g~-------~V~~~d~~~~--~~~~~~----~~------g~~~~~~~~~~~~~aDi 130 (359)
+.||+|||+ |.+|..+|..|...|. ++.++|.++. +.+... +. +.....+..+.+++||+
T Consensus 3 p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDv 82 (323)
T TIGR01759 3 PVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDA 82 (323)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCE
Confidence 468999998 9999999999988774 7999998642 222111 11 12223455577899999
Q ss_pred EEEeeC
Q 018213 131 TFAMLA 136 (359)
Q Consensus 131 vi~~~p 136 (359)
||++.-
T Consensus 83 VVitAG 88 (323)
T TIGR01759 83 ALLVGA 88 (323)
T ss_pred EEEeCC
Confidence 999874
No 313
>PRK08374 homoserine dehydrogenase; Provisional
Probab=97.21 E-value=0.0014 Score=61.07 Aligned_cols=117 Identities=16% Similarity=0.219 Sum_probs=69.0
Q ss_pred CeEEEEcCChhhHHHHHHHHH--------CCC--cEE-EEcCCccc-----h--hHHH---hC-C-Cc-c-------CCC
Q 018213 72 GRIGFLGMGIMGTPMAQNLLK--------AGC--DVT-VWNRTKSK-----C--DPLI---SL-G-AK-Y-------QPS 120 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~--------~g~--~V~-~~d~~~~~-----~--~~~~---~~-g-~~-~-------~~~ 120 (359)
.+|+|+|+|++|+.+++.|.+ .|. +|. +.|++... . ..+. +. + .. . ..+
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS 82 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence 679999999999999999876 563 433 34543211 1 1111 11 1 00 0 116
Q ss_pred HHHHh--hcCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCCh-HHHHHHHHHHHhcCCeeec-CCCCCCC
Q 018213 121 PDEVA--ASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDG-DTSKLINGHIKATGASFLE-APVSGSK 195 (359)
Q Consensus 121 ~~~~~--~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~-~~~~~l~~~l~~~~~~~~~-~~~~~~~ 195 (359)
.++++ .++|+||-+++ +......+ ...+..|..+|..+.+.. ...+++.+..++++..+.. +.+.++.
T Consensus 83 ~~ell~~~~~DVvVd~t~-~~~a~~~~------~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~ea~v~~Gi 154 (336)
T PRK08374 83 PEEIVEEIDADIVVDVTN-DKNAHEWH------LEALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLFEATVMAGT 154 (336)
T ss_pred HHHHHhcCCCCEEEECCC-cHHHHHHH------HHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEEeccccccC
Confidence 67777 47899999885 44555554 245677888885554321 3445676766667776654 3344333
No 314
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=97.21 E-value=0.00097 Score=59.04 Aligned_cols=112 Identities=18% Similarity=0.251 Sum_probs=67.3
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEE--------cCCccchhHHHh----CCC--ccCC----------CHH-H
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVW--------NRTKSKCDPLIS----LGA--KYQP----------SPD-E 123 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~--------d~~~~~~~~~~~----~g~--~~~~----------~~~-~ 123 (359)
++++++.|-|+|++|..+|+.|.+.|..|+.. |++.-..+.+.+ .+. .... +.+ +
T Consensus 30 l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 109 (244)
T PF00208_consen 30 LEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDDE 109 (244)
T ss_dssp STTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHCH
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEeccccc
Confidence 78899999999999999999999999887654 544333333332 122 1111 121 4
Q ss_pred Hh-hcCCEEEEeeCChhHHHHHhcccccccc-cCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213 124 VA-ASCDVTFAMLADPESAMDVACGKHGAAS-GMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (359)
Q Consensus 124 ~~-~~aDivi~~~p~~~~~~~~~~~~~~~~~-~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (359)
++ .+|||++-|.- . +.+ +++-.+ .+++++-+|-.+...|.+.++.. .|.++|+.+++
T Consensus 110 il~~~~DiliP~A~-~----~~I--~~~~~~~~i~~~akiIvegAN~p~t~~a~~-~L~~rGI~viP 168 (244)
T PF00208_consen 110 ILSVDCDILIPCAL-G----NVI--NEDNAPSLIKSGAKIIVEGANGPLTPEADE-ILRERGILVIP 168 (244)
T ss_dssp GGTSSSSEEEEESS-S----TSB--SCHHHCHCHHTT-SEEEESSSSSBSHHHHH-HHHHTT-EEE-
T ss_pred cccccccEEEEcCC-C----Cee--CHHHHHHHHhccCcEEEeCcchhccHHHHH-HHHHCCCEEEc
Confidence 55 48999998863 2 223 233334 45555544444444444554444 88888877764
No 315
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=97.20 E-value=0.00077 Score=56.83 Aligned_cols=62 Identities=27% Similarity=0.404 Sum_probs=48.5
Q ss_pred EEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCcc-------CCCHHHHhhcCCEEEEeeCC
Q 018213 74 IGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY-------QPSPDEVAASCDVTFAMLAD 137 (359)
Q Consensus 74 igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~-------~~~~~~~~~~aDivi~~~p~ 137 (359)
|.|+|. |.+|+.+++.|.+.|++|++..|++++.+. ..+++. .+++.++++++|+|+.+++.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~ 70 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED--SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP 70 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH--CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc--ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence 678995 999999999999999999999999887665 223221 12345677899999999964
No 316
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=97.19 E-value=0.0013 Score=61.14 Aligned_cols=36 Identities=25% Similarity=0.415 Sum_probs=33.1
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCc
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK 104 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~ 104 (359)
++.++|.|||+|.+|+.+|+.|+..|+ +++++|++.
T Consensus 22 L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 22 IREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 677899999999999999999999997 789999875
No 317
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=97.19 E-value=0.0018 Score=58.37 Aligned_cols=108 Identities=17% Similarity=0.226 Sum_probs=72.7
Q ss_pred CCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhC-CCccCCCHHHH-hhcCCEEEEeeCChhHH--H--H
Q 018213 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL-GAKYQPSPDEV-AASCDVTFAMLADPESA--M--D 143 (359)
Q Consensus 71 ~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~-g~~~~~~~~~~-~~~aDivi~~~p~~~~~--~--~ 143 (359)
++++.|+|+|..+++++..|...|. +|++++|++++.+.+.+. +.... +++ ...+|+||.|+|....- . .
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~---~~~~~~~~dlvINaTp~Gm~~~~~~~~ 198 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWR---PDLGGIEADILVNVTPIGMAGGPEADK 198 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcch---hhcccccCCEEEECCccccCCCCcccc
Confidence 3589999999999999999999997 599999999887776543 22111 111 24589999999854221 0 0
Q ss_pred -HhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213 144 -VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (359)
Q Consensus 144 -~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (359)
-+ + ...++++.+++|+.-.+.. ..+.+..++.|...++
T Consensus 199 ~pi--~---~~~l~~~~~v~D~vY~P~~--T~ll~~A~~~G~~~i~ 237 (272)
T PRK12550 199 LAF--P---EAEIDAASVVFDVVALPAE--TPLIRYARARGKTVIT 237 (272)
T ss_pred CCC--C---HHHcCCCCEEEEeecCCcc--CHHHHHHHHCcCeEeC
Confidence 11 1 1346778889988665433 2466666777766554
No 318
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.17 E-value=0.0019 Score=58.40 Aligned_cols=78 Identities=24% Similarity=0.337 Sum_probs=60.9
Q ss_pred cCCCCeEEEEcCC-hhhHHHHHHHHHC----CCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHH
Q 018213 68 DELPGRIGFLGMG-IMGTPMAQNLLKA----GCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAM 142 (359)
Q Consensus 68 ~~~~~~igiiG~G-~iG~~ia~~l~~~----g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~ 142 (359)
++.++++.|||-+ .+|+.++..|... +..|+++.... .++.+..++|||||.++..+.
T Consensus 154 ~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T--------------~~l~~~~~~ADIvIsAvGkp~--- 216 (297)
T PRK14167 154 DTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRT--------------DDLAAKTRRADIVVAAAGVPE--- 216 (297)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCCcC---
Confidence 4889999999974 5899999999876 78899886432 256788899999999997654
Q ss_pred HHhcccccccccCCCCCEEEeccCCC
Q 018213 143 DVACGKHGAASGMGPGKGYVDVSTVD 168 (359)
Q Consensus 143 ~~~~~~~~~~~~l~~~~~vi~~s~~~ 168 (359)
++ . .+++++|+++||++...
T Consensus 217 -~i--~---~~~ik~gaiVIDvGin~ 236 (297)
T PRK14167 217 -LI--D---GSMLSEGATVIDVGINR 236 (297)
T ss_pred -cc--C---HHHcCCCCEEEEccccc
Confidence 33 1 24578999999997443
No 319
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=97.14 E-value=0.002 Score=63.74 Aligned_cols=113 Identities=12% Similarity=0.064 Sum_probs=72.6
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC-CCcc--CCCHHHHh-hcCCEEEEeeCChhHH--H
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-GAKY--QPSPDEVA-ASCDVTFAMLADPESA--M 142 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-g~~~--~~~~~~~~-~~aDivi~~~p~~~~~--~ 142 (359)
++++++.|+|.|.+|++++..|...|++|++++|+.++.+.+.+. +... ..+..+.. ..+|+|+.++|....- .
T Consensus 377 ~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~~~~~~~~~~~~~~~~~diiINtT~vGm~~~~~ 456 (529)
T PLN02520 377 LAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGGQALTLADLENFHPEEGMILANTTSVGMQPNVD 456 (529)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceeeHhHhhhhccccCeEEEecccCCCCCCCC
Confidence 667899999999999999999999999999999998777666542 2111 12222222 3568888787644221 0
Q ss_pred H-HhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213 143 D-VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (359)
Q Consensus 143 ~-~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (359)
. -+ + ...++++.+++|+.-.+.. + .+.+..++.|...++
T Consensus 457 ~~pl--~---~~~l~~~~~v~D~vY~P~~-T-~ll~~A~~~G~~~~~ 496 (529)
T PLN02520 457 ETPI--S---KHALKHYSLVFDAVYTPKI-T-RLLREAEESGAIIVS 496 (529)
T ss_pred CCcc--c---HhhCCCCCEEEEeccCCCc-C-HHHHHHHHCCCeEeC
Confidence 0 11 0 1346677888888665443 2 455666666655443
No 320
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.14 E-value=0.002 Score=58.37 Aligned_cols=78 Identities=21% Similarity=0.341 Sum_probs=60.6
Q ss_pred ccCCCCeEEEEcCC-hhhHHHHHHHHH----CCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHH
Q 018213 67 ADELPGRIGFLGMG-IMGTPMAQNLLK----AGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESA 141 (359)
Q Consensus 67 ~~~~~~~igiiG~G-~iG~~ia~~l~~----~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~ 141 (359)
.+++++++.|||-+ .+|+.++..|.+ .|..|+.+..+. .++++.+++||+||.+++.+
T Consensus 155 i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t--------------~~l~~~~~~ADIvI~Avg~~--- 217 (295)
T PRK14174 155 IETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT--------------KDIPSYTRQADILIAAIGKA--- 217 (295)
T ss_pred CCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc--------------hhHHHHHHhCCEEEEecCcc---
Confidence 34889999999975 589999999987 578898887543 24678889999999999765
Q ss_pred HHHhcccccccccCCCCCEEEeccCC
Q 018213 142 MDVACGKHGAASGMGPGKGYVDVSTV 167 (359)
Q Consensus 142 ~~~~~~~~~~~~~l~~~~~vi~~s~~ 167 (359)
+++ .. +.+++|+++||++-.
T Consensus 218 -~li--~~---~~vk~GavVIDVgi~ 237 (295)
T PRK14174 218 -RFI--TA---DMVKPGAVVIDVGIN 237 (295)
T ss_pred -Ccc--CH---HHcCCCCEEEEeecc
Confidence 234 22 245899999999743
No 321
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=97.14 E-value=0.023 Score=49.04 Aligned_cols=68 Identities=19% Similarity=0.158 Sum_probs=48.0
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCcc-chhHHHhCC-Ccc---CCCHHHHhhcCCEEEEeeCC
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS-KCDPLISLG-AKY---QPSPDEVAASCDVTFAMLAD 137 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~-~~~~~~~~g-~~~---~~~~~~~~~~aDivi~~~p~ 137 (359)
+++++|.|||.|.+|..-++.|...|.+|+++++... ....+.+.| +.. ... .+.+.++|+|+.++..
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~-~~dl~~~~lVi~at~d 79 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFD-ADILEGAFLVIAATDD 79 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCC-HHHhCCcEEEEECCCC
Confidence 7789999999999999999999999999999988654 223333332 221 112 2345677777777643
No 322
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.11 E-value=0.002 Score=57.95 Aligned_cols=77 Identities=26% Similarity=0.336 Sum_probs=60.4
Q ss_pred ccCCCCeEEEEcCC-hhhHHHHHHHHH----CCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHH
Q 018213 67 ADELPGRIGFLGMG-IMGTPMAQNLLK----AGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESA 141 (359)
Q Consensus 67 ~~~~~~~igiiG~G-~iG~~ia~~l~~----~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~ 141 (359)
.+++++++.|||-+ .+|+.++..|.. .+..|+.+..+. .++.+.+++||+||.+++.+.-
T Consensus 153 i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t--------------~~l~~~~~~ADIVI~AvG~p~l- 217 (286)
T PRK14184 153 LSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT--------------PDLAEECREADFLFVAIGRPRF- 217 (286)
T ss_pred CCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc--------------hhHHHHHHhCCEEEEecCCCCc-
Confidence 34889999999975 589999999998 678898887532 2577889999999999975532
Q ss_pred HHHhcccccccccCCCCCEEEeccC
Q 018213 142 MDVACGKHGAASGMGPGKGYVDVST 166 (359)
Q Consensus 142 ~~~~~~~~~~~~~l~~~~~vi~~s~ 166 (359)
+ .. +.+++|+++||++-
T Consensus 218 ---i--~~---~~vk~GavVIDVGi 234 (286)
T PRK14184 218 ---V--TA---DMVKPGAVVVDVGI 234 (286)
T ss_pred ---C--CH---HHcCCCCEEEEeee
Confidence 3 12 34689999999964
No 323
>PRK05442 malate dehydrogenase; Provisional
Probab=97.10 E-value=0.003 Score=58.48 Aligned_cols=67 Identities=16% Similarity=0.218 Sum_probs=46.5
Q ss_pred CCCeEEEEcC-ChhhHHHHHHHHHCCC-------cEEEEcCCccc--hhH----HHhC------CCccCCCHHHHhhcCC
Q 018213 70 LPGRIGFLGM-GIMGTPMAQNLLKAGC-------DVTVWNRTKSK--CDP----LISL------GAKYQPSPDEVAASCD 129 (359)
Q Consensus 70 ~~~~igiiG~-G~iG~~ia~~l~~~g~-------~V~~~d~~~~~--~~~----~~~~------g~~~~~~~~~~~~~aD 129 (359)
+++||+|||+ |.+|..+|..|...|. ++.++|.++.. .+. +.+. ......+..+.+++||
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daD 82 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDAD 82 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCC
Confidence 3478999998 9999999999887553 79999985431 211 1111 1233345557789999
Q ss_pred EEEEeeC
Q 018213 130 VTFAMLA 136 (359)
Q Consensus 130 ivi~~~p 136 (359)
+|+++.-
T Consensus 83 iVVitaG 89 (326)
T PRK05442 83 VALLVGA 89 (326)
T ss_pred EEEEeCC
Confidence 9999774
No 324
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=97.04 E-value=0.0027 Score=58.06 Aligned_cols=110 Identities=14% Similarity=0.067 Sum_probs=76.3
Q ss_pred CCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHH---HHHhc-
Q 018213 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESA---MDVAC- 146 (359)
Q Consensus 71 ~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~---~~~~~- 146 (359)
+++++|||.-.=-..+++.|.+.|++|.++.-..+ .....|+....+.++++.++|+|+.-+|.+..- +..+.
T Consensus 2 ~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~---~~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~ 78 (296)
T PRK08306 2 GKHIAVIGGDARQLELIRKLVELGAKVSLVGFDQL---DHGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSN 78 (296)
T ss_pred CcEEEEEcCcHHHHHHHHHHHHCCCEEEEEecccc---ccccCCceeeccHHHHhccCCEEEECCccccCCceeeccccc
Confidence 46799999999999999999999999998764321 122347778878889999999999988743211 11100
Q ss_pred ----ccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213 147 ----GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (359)
Q Consensus 147 ----~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (359)
-+++.++.|+++.+++ .+...+. +.+.+.++++.+++
T Consensus 79 ~~~~~~~~~l~~l~~~~~v~-~G~~~~~----~~~~~~~~gi~~~~ 119 (296)
T PRK08306 79 EKLVLTEELLELTPEHCTIF-SGIANPY----LKELAKETNRKLVE 119 (296)
T ss_pred cCCcchHHHHHhcCCCCEEE-EecCCHH----HHHHHHHCCCeEEE
Confidence 0245577899998555 3555554 23456678887775
No 325
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=97.04 E-value=0.0025 Score=53.53 Aligned_cols=32 Identities=22% Similarity=0.463 Sum_probs=29.1
Q ss_pred eEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCc
Q 018213 73 RIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK 104 (359)
Q Consensus 73 ~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~ 104 (359)
+|+|||+|.+|+.+++.|+..|. +++++|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 48999999999999999999998 599999865
No 326
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.03 E-value=0.0049 Score=60.33 Aligned_cols=66 Identities=26% Similarity=0.372 Sum_probs=49.6
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHH-HhCCCccCC--CHHHHhhcCCEEEEe
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL-ISLGAKYQP--SPDEVAASCDVTFAM 134 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~-~~~g~~~~~--~~~~~~~~aDivi~~ 134 (359)
..+++|.|+|+|..|.++|+.|...|++|+++|++......+ .+.|+.... ...+.+.++|+||..
T Consensus 13 ~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~S 81 (473)
T PRK00141 13 ELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTS 81 (473)
T ss_pred ccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeC
Confidence 566889999999999999999999999999999876543332 334665532 223445688988876
No 327
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=97.03 E-value=0.0018 Score=60.32 Aligned_cols=92 Identities=14% Similarity=0.154 Sum_probs=55.6
Q ss_pred CCCCeEEEEcC-ChhhHHHHHHHHHCCCc---EEEE--cCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHH
Q 018213 69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCD---VTVW--NRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAM 142 (359)
Q Consensus 69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~---V~~~--d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~ 142 (359)
...++|+|+|. |.+|..+.+.|...+|. +... .|+..+.-..............+.+.++|+||+|+|.. ...
T Consensus 5 ~~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~-~s~ 83 (344)
T PLN02383 5 ENGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGS-ISK 83 (344)
T ss_pred CCCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcH-HHH
Confidence 34578999996 99999999999987763 3322 23322211111111111111124457899999999844 555
Q ss_pred HHhcccccccccCCCCCEEEeccCC
Q 018213 143 DVACGKHGAASGMGPGKGYVDVSTV 167 (359)
Q Consensus 143 ~~~~~~~~~~~~l~~~~~vi~~s~~ 167 (359)
.+. +++ .+.|..|||.|..
T Consensus 84 ~~~---~~~---~~~g~~VIDlS~~ 102 (344)
T PLN02383 84 KFG---PIA---VDKGAVVVDNSSA 102 (344)
T ss_pred HHH---HHH---HhCCCEEEECCch
Confidence 554 322 3468899999743
No 328
>CHL00194 ycf39 Ycf39; Provisional
Probab=97.00 E-value=0.0015 Score=60.48 Aligned_cols=65 Identities=17% Similarity=0.212 Sum_probs=48.8
Q ss_pred CeEEEEc-CChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCcc-------CCCHHHHhhcCCEEEEeeC
Q 018213 72 GRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY-------QPSPDEVAASCDVTFAMLA 136 (359)
Q Consensus 72 ~~igiiG-~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~-------~~~~~~~~~~aDivi~~~p 136 (359)
|+|.|+| +|.+|+.+++.|.+.|++|++.+|++++...+...++.. ..++.++++++|+|+.+.+
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 5799999 599999999999999999999999875544333334332 1245567888999987653
No 329
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=96.98 E-value=0.0038 Score=60.98 Aligned_cols=116 Identities=21% Similarity=0.202 Sum_probs=72.0
Q ss_pred CCCCeEEEEcCChhhHH-HHHHHHHCCCcEEEEcCCcc-chhHHHhCCCccC-CCHHHHhhcCCEEEEee--CC-hhHHH
Q 018213 69 ELPGRIGFLGMGIMGTP-MAQNLLKAGCDVTVWNRTKS-KCDPLISLGAKYQ-PSPDEVAASCDVTFAML--AD-PESAM 142 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~-ia~~l~~~g~~V~~~d~~~~-~~~~~~~~g~~~~-~~~~~~~~~aDivi~~~--p~-~~~~~ 142 (359)
.++++|.|||.|..|.+ +|+.|.+.|++|+++|.+.. ..+.+.+.|+... ....+.+.++|+||+.- |. .+...
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~ 84 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDNPELV 84 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHH
Confidence 45578999999999999 89999999999999997643 2234555566553 12234556899988754 22 22333
Q ss_pred HHh------cccccccccC-CCCC-EEEeccCCChHHHHHHHHHHHhcCC
Q 018213 143 DVA------CGKHGAASGM-GPGK-GYVDVSTVDGDTSKLINGHIKATGA 184 (359)
Q Consensus 143 ~~~------~~~~~~~~~l-~~~~-~vi~~s~~~~~~~~~l~~~l~~~~~ 184 (359)
... .+..+++..+ ++.. +-|.-|.|+..+..-+...|+..|.
T Consensus 85 ~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g~ 134 (461)
T PRK00421 85 AARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAGL 134 (461)
T ss_pred HHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcCC
Confidence 221 1122333222 2223 3444456677777777777876663
No 330
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=96.97 E-value=0.0021 Score=59.85 Aligned_cols=89 Identities=17% Similarity=0.155 Sum_probs=56.4
Q ss_pred CeEEEEcC-ChhhHHHHHHHHHCCCc---EEEEcCCccchhHHHhCC--CccCCCHHHHhhcCCEEEEeeCChhHHHHHh
Q 018213 72 GRIGFLGM-GIMGTPMAQNLLKAGCD---VTVWNRTKSKCDPLISLG--AKYQPSPDEVAASCDVTFAMLADPESAMDVA 145 (359)
Q Consensus 72 ~~igiiG~-G~iG~~ia~~l~~~g~~---V~~~d~~~~~~~~~~~~g--~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~ 145 (359)
++|+|+|. |.+|+.+.+.|...||. +....+..+.-+.+.-.+ +...+...+.+.++|+||+|+| ....+.+.
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g-~g~s~~~~ 80 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAG-GSVSKKYA 80 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCC-hHHHHHHH
Confidence 68999996 99999999999998775 355544333222221111 2222111233478999999997 44555555
Q ss_pred cccccccccCCCCCEEEeccCC
Q 018213 146 CGKHGAASGMGPGKGYVDVSTV 167 (359)
Q Consensus 146 ~~~~~~~~~l~~~~~vi~~s~~ 167 (359)
+.+ ++.|..|||.|..
T Consensus 81 ---~~~---~~~G~~VIDlS~~ 96 (334)
T PRK14874 81 ---PKA---AAAGAVVIDNSSA 96 (334)
T ss_pred ---HHH---HhCCCEEEECCch
Confidence 332 3568899998754
No 331
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.95 E-value=0.003 Score=58.00 Aligned_cols=66 Identities=14% Similarity=0.179 Sum_probs=45.2
Q ss_pred CeEEEEcC-ChhhHHHHHHHHHCCC--cEEEEcCCccch--hHHHhC----CCccC---CCHHHHhhcCCEEEEeeCC
Q 018213 72 GRIGFLGM-GIMGTPMAQNLLKAGC--DVTVWNRTKSKC--DPLISL----GAKYQ---PSPDEVAASCDVTFAMLAD 137 (359)
Q Consensus 72 ~~igiiG~-G~iG~~ia~~l~~~g~--~V~~~d~~~~~~--~~~~~~----g~~~~---~~~~~~~~~aDivi~~~p~ 137 (359)
|||+|||+ |++|..+|..|...|. ++.++|++..+. -.+.+. .+... +++.+.+++||+|+++.-.
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~ 78 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGV 78 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCC
Confidence 58999999 9999999999988874 789999871111 112221 12211 2335678999999998743
No 332
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.94 E-value=0.006 Score=59.36 Aligned_cols=68 Identities=21% Similarity=0.307 Sum_probs=50.1
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCc-cch----hHHHhCCCcc--CCCHHHHhhcCCEEEEeeC
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK-SKC----DPLISLGAKY--QPSPDEVAASCDVTFAMLA 136 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~-~~~----~~~~~~g~~~--~~~~~~~~~~aDivi~~~p 136 (359)
+++++|.|+|.|.+|.++|+.|++.|++|+++|++. +.. +.+.+.|+.. .+..++....+|+||.+.-
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g 77 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPG 77 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCC
Confidence 567899999999999999999999999999999975 222 2233335432 2233455678999998763
No 333
>PTZ00325 malate dehydrogenase; Provisional
Probab=96.94 E-value=0.0018 Score=59.74 Aligned_cols=69 Identities=12% Similarity=0.127 Sum_probs=46.7
Q ss_pred CCCCeEEEEcC-ChhhHHHHHHHHHCC--CcEEEEcCCccchh--HHHhC----CCccC---CCHHHHhhcCCEEEEeeC
Q 018213 69 ELPGRIGFLGM-GIMGTPMAQNLLKAG--CDVTVWNRTKSKCD--PLISL----GAKYQ---PSPDEVAASCDVTFAMLA 136 (359)
Q Consensus 69 ~~~~~igiiG~-G~iG~~ia~~l~~~g--~~V~~~d~~~~~~~--~~~~~----g~~~~---~~~~~~~~~aDivi~~~p 136 (359)
.+++||+|||+ |++|..+|..|...+ .++.++|+.....+ .+.+. .+... .+..+.++++|+|+++.-
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG 85 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAG 85 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCC
Confidence 56789999999 999999999998655 58999998322211 11111 11112 122577899999998874
Q ss_pred C
Q 018213 137 D 137 (359)
Q Consensus 137 ~ 137 (359)
.
T Consensus 86 ~ 86 (321)
T PTZ00325 86 V 86 (321)
T ss_pred C
Confidence 3
No 334
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=96.94 E-value=0.0058 Score=58.58 Aligned_cols=68 Identities=13% Similarity=0.113 Sum_probs=49.8
Q ss_pred CCCeEEEEcC-ChhhHHHHHHHHHC-------CC--cEEEEcCCccchhHHH----h------CCCccCCCHHHHhhcCC
Q 018213 70 LPGRIGFLGM-GIMGTPMAQNLLKA-------GC--DVTVWNRTKSKCDPLI----S------LGAKYQPSPDEVAASCD 129 (359)
Q Consensus 70 ~~~~igiiG~-G~iG~~ia~~l~~~-------g~--~V~~~d~~~~~~~~~~----~------~g~~~~~~~~~~~~~aD 129 (359)
+.-||+|||+ |++|..+|..|... |. ++..+|++.++.+... + ..+....+..+.+++||
T Consensus 99 ~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaD 178 (444)
T PLN00112 99 KLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAE 178 (444)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCC
Confidence 4468999999 99999999999876 54 7888999887654322 1 12332334557789999
Q ss_pred EEEEeeCC
Q 018213 130 VTFAMLAD 137 (359)
Q Consensus 130 ivi~~~p~ 137 (359)
|||++.-.
T Consensus 179 iVVitAG~ 186 (444)
T PLN00112 179 WALLIGAK 186 (444)
T ss_pred EEEECCCC
Confidence 99998744
No 335
>PLN00106 malate dehydrogenase
Probab=96.93 E-value=0.0075 Score=55.68 Aligned_cols=68 Identities=9% Similarity=0.159 Sum_probs=47.6
Q ss_pred CCCCeEEEEcC-ChhhHHHHHHHHHCCC--cEEEEcCCccchh--HHHhC----CCc---cCCCHHHHhhcCCEEEEeeC
Q 018213 69 ELPGRIGFLGM-GIMGTPMAQNLLKAGC--DVTVWNRTKSKCD--PLISL----GAK---YQPSPDEVAASCDVTFAMLA 136 (359)
Q Consensus 69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~--~V~~~d~~~~~~~--~~~~~----g~~---~~~~~~~~~~~aDivi~~~p 136 (359)
....||+|||+ |++|..+|..|...+. ++.++|+++...+ .+.+. .+. ..++..+.++++|+||++.-
T Consensus 16 ~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG 95 (323)
T PLN00106 16 APGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAG 95 (323)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCC
Confidence 34478999999 9999999999987664 7999998762211 11111 111 12345678899999999874
No 336
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.92 E-value=0.0019 Score=59.35 Aligned_cols=64 Identities=13% Similarity=0.239 Sum_probs=45.9
Q ss_pred eEEEEcCChhhHHHHHHHHHCCC--cEEEEcCCccchhHHH----hC-------CCccCCCHHHHhhcCCEEEEeeC
Q 018213 73 RIGFLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLI----SL-------GAKYQPSPDEVAASCDVTFAMLA 136 (359)
Q Consensus 73 ~igiiG~G~iG~~ia~~l~~~g~--~V~~~d~~~~~~~~~~----~~-------g~~~~~~~~~~~~~aDivi~~~p 136 (359)
||+|||+|.+|..+|..|...|. ++.++|.++++.+... +. .+....+..+.+++||+|+++.-
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG 77 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAG 77 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCC
Confidence 59999999999999999988775 7999999876543211 10 11222233466789999999874
No 337
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=96.91 E-value=0.019 Score=49.52 Aligned_cols=70 Identities=26% Similarity=0.266 Sum_probs=51.0
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCc-cchhHHHhC-CCcc---CCCHHHHhhcCCEEEEeeCChh
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK-SKCDPLISL-GAKY---QPSPDEVAASCDVTFAMLADPE 139 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~-~~~~~~~~~-g~~~---~~~~~~~~~~aDivi~~~p~~~ 139 (359)
+++++|.|||.|.+|..=++.|.+.|.+|+++.+.. +....+.+. ++.. .-+.+++ ..+++|+.+++++.
T Consensus 10 l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~~-~~~~lviaAt~d~~ 84 (210)
T COG1648 10 LEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAEDL-DDAFLVIAATDDEE 84 (210)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChhhh-cCceEEEEeCCCHH
Confidence 788999999999999999999999999999998765 333333333 2211 1233343 45999999997544
No 338
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.86 E-value=0.0097 Score=55.15 Aligned_cols=66 Identities=17% Similarity=0.185 Sum_probs=46.2
Q ss_pred CCeEEEEcC-ChhhHHHHHHHHHCC-------CcEEEEcCCccc--hhH----HHh------CCCccCCCHHHHhhcCCE
Q 018213 71 PGRIGFLGM-GIMGTPMAQNLLKAG-------CDVTVWNRTKSK--CDP----LIS------LGAKYQPSPDEVAASCDV 130 (359)
Q Consensus 71 ~~~igiiG~-G~iG~~ia~~l~~~g-------~~V~~~d~~~~~--~~~----~~~------~g~~~~~~~~~~~~~aDi 130 (359)
+.||+|+|+ |.+|..++..|...+ .+|.++|+++.. .+. +.+ ..+....++.+.+++||+
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDi 81 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDV 81 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCE
Confidence 367999999 999999999998754 489999986532 111 110 012223566677899999
Q ss_pred EEEeeC
Q 018213 131 TFAMLA 136 (359)
Q Consensus 131 vi~~~p 136 (359)
||++.-
T Consensus 82 VI~tAG 87 (325)
T cd01336 82 AILVGA 87 (325)
T ss_pred EEEeCC
Confidence 998763
No 339
>PRK14031 glutamate dehydrogenase; Provisional
Probab=96.86 E-value=0.0075 Score=57.73 Aligned_cols=113 Identities=17% Similarity=0.113 Sum_probs=67.7
Q ss_pred ccCCCCeEEEEcCChhhHHHHHHHHHCCCcEEE-EcC----------Cccchh---HHHhC------------CCccCCC
Q 018213 67 ADELPGRIGFLGMGIMGTPMAQNLLKAGCDVTV-WNR----------TKSKCD---PLISL------------GAKYQPS 120 (359)
Q Consensus 67 ~~~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~-~d~----------~~~~~~---~~~~~------------g~~~~~~ 120 (359)
.+++++||.|.|+|++|...|+.|.+.|.+|++ .|. +.+++. .+++. ++... +
T Consensus 224 ~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i-~ 302 (444)
T PRK14031 224 TDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYV-E 302 (444)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEc-C
Confidence 358899999999999999999999999999987 441 111111 01100 22222 2
Q ss_pred HHHHh-hcCCEEEEeeCChhHHHHHhcccccccccCC-CCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213 121 PDEVA-ASCDVTFAMLADPESAMDVACGKHGAASGMG-PGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (359)
Q Consensus 121 ~~~~~-~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~-~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (359)
.++++ .+|||++=|.- .+.| +.+-.+.++ ++..+|..+...|.+.+ ..+.+.++++.+++
T Consensus 303 ~d~~~~~~cDIliPaAl-----~n~I--~~~na~~l~a~g~~~V~EgAN~P~t~e-A~~~L~~rgI~~~P 364 (444)
T PRK14031 303 GARPWGEKGDIALPSAT-----QNEL--NGDDARQLVANGVIAVSEGANMPSTPE-AIKVFQDAKILYAP 364 (444)
T ss_pred CcccccCCCcEEeeccc-----cccc--CHHHHHHHHhcCCeEEECCCCCCCCHH-HHHHHHHCCcEEeC
Confidence 33332 46899887662 2333 233333443 34445555544566665 44667788887765
No 340
>PF08546 ApbA_C: Ketopantoate reductase PanE/ApbA C terminal; InterPro: IPR013752 This is the C-terminal domain of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, 1.1.1.169 from EC. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) = 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway []. ApbA and PanE are allelic []. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway []. ; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 1YJQ_A 1KS9_A 2OFP_A 1YON_A 2EW2_B 3EGO_B 3HN2_D 3GHY_B 3G17_E 3HWR_B ....
Probab=96.86 E-value=0.0062 Score=48.02 Aligned_cols=81 Identities=20% Similarity=0.240 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHcCCC--HHHHHHHHhhccccchhhhhcccccccCCCCCC--cchhHHHHHHHHHHHHHHhcCCCch
Q 018213 251 MMATFSEGLLHSEKVGLD--PNVLVEVVSQGAISAPMYSLKGPSMIESLYPTA--FPLKHQQKDLRLALGLAESVSQSTP 326 (359)
Q Consensus 251 ~~~~~~Ea~~l~~~~Gi~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~--~~~~~~~kd~~~~~~~a~~~g~~~p 326 (359)
+..++.|+..++++.|++ .+.+.+.+.......+ ...++|.++ ...+ ..++.. .+.+++.++++|+++|
T Consensus 40 ~~~l~~E~~~va~a~G~~l~~~~~~~~~~~~~~~~~---~~~~SM~~D-~~~gr~tEid~i---~G~vv~~a~~~gv~~P 112 (125)
T PF08546_consen 40 IRALMREVIAVARALGIPLDPDDLEEAIERLIRSTP---DNRSSMLQD-IEAGRPTEIDYI---NGYVVRLAKKHGVPTP 112 (125)
T ss_dssp HHHHHHHHHHHHHHTTSS--HHHHHHHHHHHHHCTT---TT--HHHHH-HHTTB--SHHHT---HHHHHHHHHHTT---H
T ss_pred HHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcC---CccccHHHH-HHHcccccHHHH---HHHHHHHHHHHCCCCc
Confidence 455778999999999974 3334444432211100 012233322 1111 224444 7889999999999999
Q ss_pred HHHHHHHHHHHH
Q 018213 327 IAAAANELYKVA 338 (359)
Q Consensus 327 ~~~~~~~~~~~a 338 (359)
.++.++++++..
T Consensus 113 ~~~~i~~lvk~~ 124 (125)
T PF08546_consen 113 VNETIYALVKAI 124 (125)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998753
No 341
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=96.85 E-value=0.0042 Score=56.92 Aligned_cols=122 Identities=24% Similarity=0.291 Sum_probs=68.3
Q ss_pred CCeEEEEcCChhhHHHHHHHHHC--------CCcEE---EEcCCccchhHHHhCC-CccCCCH-----HHHhh--cCCEE
Q 018213 71 PGRIGFLGMGIMGTPMAQNLLKA--------GCDVT---VWNRTKSKCDPLISLG-AKYQPSP-----DEVAA--SCDVT 131 (359)
Q Consensus 71 ~~~igiiG~G~iG~~ia~~l~~~--------g~~V~---~~d~~~~~~~~~~~~g-~~~~~~~-----~~~~~--~aDiv 131 (359)
..+|+|+|+|.+|+.+++.|.++ |.++. +.+|+......+.-.+ .....+. .+++. +.|+|
T Consensus 3 ~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvv 82 (333)
T COG0460 3 TVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLDLLNAEVWTTDGALSLGDEVLLDEDIDVV 82 (333)
T ss_pred eEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcccccccchhhheecccccccHhhhccccCCEE
Confidence 47899999999999999999875 33433 3455443322111011 1122223 34443 46789
Q ss_pred EEeeCC-hhHHHHHhcccccccccCCCCCEEEeccCCCh-HHHHHHHHHHHhcCCeee-cCCCCCCCc
Q 018213 132 FAMLAD-PESAMDVACGKHGAASGMGPGKGYVDVSTVDG-DTSKLINGHIKATGASFL-EAPVSGSKK 196 (359)
Q Consensus 132 i~~~p~-~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~-~~~~~l~~~l~~~~~~~~-~~~~~~~~~ 196 (359)
+.+++. ....+. . ..+...++.|..||...-... ..-.+|.+..++.|..+. .+.+.++.|
T Consensus 83 ve~~~~d~~~~~~-~---~~~~~al~~GkhVVTaNK~~lA~~~~el~~~A~~~g~~l~yEAtV~gGiP 146 (333)
T COG0460 83 VELVGGDVEPAEP-A---DLYLKALENGKHVVTANKALLALHYHELREAAEKNGVKLLYEATVGGGIP 146 (333)
T ss_pred EecCcccCCchhh-H---HHHHHHHHcCCeEECCCchHhHhhHHHHHHHHHHhCCeEEEEeeeccCcc
Confidence 988875 233332 3 334567889999984422211 223457777777665543 455555443
No 342
>PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequences are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This entry represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. The NAD-binding domain is described in IPR006115 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 2ZYD_A 2ZYA_A 3FWN_A 2JKV_E 2ZYG_B 4E21_A 1PGJ_A 1PGP_A 1PGN_A 2PGD_A ....
Probab=96.84 E-value=0.0044 Score=55.69 Aligned_cols=96 Identities=19% Similarity=0.181 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHh---hccccchhhhhcccccccCCCCCCcchhHH-----
Q 018213 237 GAAMKLVVNMIMGSMMATFSEGLLHSEK-VGLDPNVLVEVVS---QGAISAPMYSLKGPSMIESLYPTAFPLKHQ----- 307 (359)
Q Consensus 237 ~~~~kl~~n~~~~~~~~~~~Ea~~l~~~-~Gi~~~~~~~~~~---~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~----- 307 (359)
++..||+.|.+.++++++++|++.+++. .|++.+++.+++. .+...|++.+.....+...+.....-++..
T Consensus 1 GHyvKMVHNGIEYg~MQ~iaE~y~ll~~~~~~~~~ei~~vf~~Wn~g~l~S~Lieit~~il~~~d~~g~~lld~I~d~a~ 80 (291)
T PF00393_consen 1 GHYVKMVHNGIEYGDMQLIAEGYDLLRRGLGLSNEEIADVFEEWNKGELRSYLIEITADILRKKDETGGPLLDKILDKAG 80 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--HHHHHHHHHHHHTTTT-BHHHHHHHHHHT-B-TTSSBGGGGB-S---
T ss_pred CCceeeeeccHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHCcCchhhHHHHHHHHHHhhccCccCcchhhhCCccC
Confidence 4789999999999999999999999995 6888888877766 466778887766554444442211112211
Q ss_pred -HHHHHHHHHHHHhcCCCchHHHHHH
Q 018213 308 -QKDLRLALGLAESVSQSTPIAAAAN 332 (359)
Q Consensus 308 -~kd~~~~~~~a~~~g~~~p~~~~~~ 332 (359)
-..-.+....+-+.|+|+|++..+.
T Consensus 81 ~kGtG~Wt~~~a~~~gvp~p~I~~a~ 106 (291)
T PF00393_consen 81 QKGTGKWTVQEALELGVPAPTIAAAV 106 (291)
T ss_dssp -BSHHHHHHHHHHHHT---HHHHHHH
T ss_pred CCCccchHHHHHHHhCCCccHHHHHH
Confidence 1123667888999999999988764
No 343
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=96.84 E-value=0.0051 Score=56.54 Aligned_cols=65 Identities=15% Similarity=0.232 Sum_probs=45.1
Q ss_pred eEEEEcC-ChhhHHHHHHHHHCCC--cEEEEcCCccchh--HHHhC----CCcc-C-C-CHHHHhhcCCEEEEeeCC
Q 018213 73 RIGFLGM-GIMGTPMAQNLLKAGC--DVTVWNRTKSKCD--PLISL----GAKY-Q-P-SPDEVAASCDVTFAMLAD 137 (359)
Q Consensus 73 ~igiiG~-G~iG~~ia~~l~~~g~--~V~~~d~~~~~~~--~~~~~----g~~~-~-~-~~~~~~~~aDivi~~~p~ 137 (359)
||+|||+ |++|..+|..|...+. ++.++|+++...+ .+.+. .+.. . + ++.+.+++||+|+++...
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~ 77 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGV 77 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCC
Confidence 5999999 9999999999988775 7999998762211 11111 1111 1 1 235778999999998743
No 344
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=96.84 E-value=0.0032 Score=57.92 Aligned_cols=65 Identities=25% Similarity=0.284 Sum_probs=48.6
Q ss_pred CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC-CCcc-CC---CHHHHhhcCCEEE---EeeC
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-GAKY-QP---SPDEVAASCDVTF---AMLA 136 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-g~~~-~~---~~~~~~~~aDivi---~~~p 136 (359)
++|||||-|..|+.++......|++|++.|++++........ -+.. .+ .+.++++.||+|. .++|
T Consensus 2 ~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~EfE~V~ 74 (375)
T COG0026 2 KTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITYEFENVP 74 (375)
T ss_pred CeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEEeeccCC
Confidence 689999999999999999999999999999887654322221 1111 22 4667888999995 4665
No 345
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.82 E-value=0.0047 Score=60.13 Aligned_cols=70 Identities=20% Similarity=0.241 Sum_probs=52.5
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC--CCcc-C---CCHHH----HhhcCCEEEEeeCCh
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL--GAKY-Q---PSPDE----VAASCDVTFAMLADP 138 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~--g~~~-~---~~~~~----~~~~aDivi~~~p~~ 138 (359)
..+++|.|+|+|.+|+.+++.|.+.|++|+++|+++++.+.+.+. +... . .+.+. -+.++|.|+++++..
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~ 308 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDD 308 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCc
Confidence 446889999999999999999999999999999999877776653 3321 1 12222 235789998888643
No 346
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=96.82 E-value=0.0043 Score=53.79 Aligned_cols=35 Identities=20% Similarity=0.418 Sum_probs=32.0
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCC
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRT 103 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~ 103 (359)
++..+|.|||+|.+|+.+++.|...|. +++++|.+
T Consensus 26 L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 26 LKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 677899999999999999999999997 58999886
No 347
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=96.82 E-value=0.0091 Score=52.55 Aligned_cols=104 Identities=19% Similarity=0.245 Sum_probs=64.8
Q ss_pred CCeEEEEcC-ChhhHHHHHHHHHCC-CcEE-EEcCCccch-----hHH---HhCCCccCCCHHHHhhcCCEEEEeeCChh
Q 018213 71 PGRIGFLGM-GIMGTPMAQNLLKAG-CDVT-VWNRTKSKC-----DPL---ISLGAKYQPSPDEVAASCDVTFAMLADPE 139 (359)
Q Consensus 71 ~~~igiiG~-G~iG~~ia~~l~~~g-~~V~-~~d~~~~~~-----~~~---~~~g~~~~~~~~~~~~~aDivi~~~p~~~ 139 (359)
++||+|.|+ |+||+.+.+.+.+.. +++. .++|.+... .++ ...|+...+++.....++|++|=.+ .|.
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~~~~DV~IDFT-~P~ 80 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVKADADVLIDFT-TPE 80 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccccccCceeecchhhcccCCCEEEECC-Cch
Confidence 478999998 999999999998765 5544 567765422 111 1225566666777778999999777 466
Q ss_pred HHHHHhcccccccccCCCCC-EEEeccCCChHHHHHHHHHHHh
Q 018213 140 SAMDVACGKHGAASGMGPGK-GYVDVSTVDGDTSKLINGHIKA 181 (359)
Q Consensus 140 ~~~~~~~~~~~~~~~l~~~~-~vi~~s~~~~~~~~~l~~~l~~ 181 (359)
.+...+ +-. ++.+. +||-++.-+....+.+.++.+.
T Consensus 81 ~~~~~l---~~~---~~~~~~lVIGTTGf~~e~~~~l~~~a~~ 117 (266)
T COG0289 81 ATLENL---EFA---LEHGKPLVIGTTGFTEEQLEKLREAAEK 117 (266)
T ss_pred hhHHHH---HHH---HHcCCCeEEECCCCCHHHHHHHHHHHhh
Confidence 666665 222 22333 4454433345555555555443
No 348
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=96.81 E-value=0.0017 Score=53.75 Aligned_cols=68 Identities=10% Similarity=0.196 Sum_probs=46.8
Q ss_pred CCCeEEEEcCChhhHHHHHH-H-HHCCCcEE-EEcCCccchhHHHhC-CCccCCCHHHHhh--cCCEEEEeeCC
Q 018213 70 LPGRIGFLGMGIMGTPMAQN-L-LKAGCDVT-VWNRTKSKCDPLISL-GAKYQPSPDEVAA--SCDVTFAMLAD 137 (359)
Q Consensus 70 ~~~~igiiG~G~iG~~ia~~-l-~~~g~~V~-~~d~~~~~~~~~~~~-g~~~~~~~~~~~~--~aDivi~~~p~ 137 (359)
+.-++.|||+|++|++++.. + ...|+++. ++|.+++.+...... -+.-.+++++.++ +.|+.++|+|.
T Consensus 83 ~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa 156 (211)
T COG2344 83 KTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPA 156 (211)
T ss_pred cceeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCCeeeechHHHHHHHHhcCccEEEEEccH
Confidence 44679999999999999985 3 46788765 789887754322211 1223446666676 57889999984
No 349
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=96.80 E-value=0.0058 Score=55.88 Aligned_cols=100 Identities=16% Similarity=0.295 Sum_probs=60.9
Q ss_pred CCeEEEEcC-ChhhHHHHHHHHHCC-CcEEEEcCCccchhHHHhC-----CC---cc-CCCHHHH-hhcCCEEEEeeCCh
Q 018213 71 PGRIGFLGM-GIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISL-----GA---KY-QPSPDEV-AASCDVTFAMLADP 138 (359)
Q Consensus 71 ~~~igiiG~-G~iG~~ia~~l~~~g-~~V~~~d~~~~~~~~~~~~-----g~---~~-~~~~~~~-~~~aDivi~~~p~~ 138 (359)
++||+|||. |.-|..+.+.|.... .++..+..+..+-+.+.+. |. .. ..+.+++ .++||+||+|+|..
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFlalPhg 81 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFLALPHG 81 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccccccccccCChhhhhcccCCEEEEecCch
Confidence 478999997 999999999998765 4766665443222222221 11 11 1133333 44699999999965
Q ss_pred hHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHH
Q 018213 139 ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLING 177 (359)
Q Consensus 139 ~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~ 177 (359)
. ..+++ ..+ +.+|..|||+|...-.....+.+
T Consensus 82 ~-s~~~v---~~l---~~~g~~VIDLSadfR~~d~~~ye 113 (349)
T COG0002 82 V-SAELV---PEL---LEAGCKVIDLSADFRLKDPEVYE 113 (349)
T ss_pred h-HHHHH---HHH---HhCCCeEEECCcccccCCHHHHH
Confidence 3 34444 333 33566799998876554334443
No 350
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=96.80 E-value=0.0049 Score=54.92 Aligned_cols=86 Identities=20% Similarity=0.228 Sum_probs=58.8
Q ss_pred CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHh-hcCCEEEEeeCChhHHHHHhc
Q 018213 69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVA-ASCDVTFAMLADPESAMDVAC 146 (359)
Q Consensus 69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~-~~aDivi~~~p~~~~~~~~~~ 146 (359)
+.++++.|-|+ +.||..+|+.|++.|++|++..|+.++++.+.++ +++-- -+++++-+=+.++.....+.
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~-------l~~~~~v~v~vi~~DLs~~~~~~~l~- 75 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKE-------LEDKTGVEVEVIPADLSDPEALERLE- 75 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHH-------HHHhhCceEEEEECcCCChhHHHHHH-
Confidence 56688999997 9999999999999999999999999888776542 22211 13445554455566666665
Q ss_pred ccccccccCCCCCEEEec
Q 018213 147 GKHGAASGMGPGKGYVDV 164 (359)
Q Consensus 147 ~~~~~~~~l~~~~~vi~~ 164 (359)
.++.....+=.++||.
T Consensus 76 --~~l~~~~~~IdvLVNN 91 (265)
T COG0300 76 --DELKERGGPIDVLVNN 91 (265)
T ss_pred --HHHHhcCCcccEEEEC
Confidence 4444432333566666
No 351
>PRK15076 alpha-galactosidase; Provisional
Probab=96.80 E-value=0.0015 Score=62.84 Aligned_cols=66 Identities=14% Similarity=0.199 Sum_probs=46.9
Q ss_pred CeEEEEcCChhhHHHHH--HHH----HCCCcEEEEcCCccchhHHHh--------CC----CccCCCHHHHhhcCCEEEE
Q 018213 72 GRIGFLGMGIMGTPMAQ--NLL----KAGCDVTVWNRTKSKCDPLIS--------LG----AKYQPSPDEVAASCDVTFA 133 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~--~l~----~~g~~V~~~d~~~~~~~~~~~--------~g----~~~~~~~~~~~~~aDivi~ 133 (359)
+||+|||.|.+|...+. .+. -.+.+|.++|+++++.+.... .+ +..+.+..+.+++||+|++
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv~ 81 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVIN 81 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEeE
Confidence 68999999999966554 332 235689999999876552111 11 3345677888999999999
Q ss_pred eeCC
Q 018213 134 MLAD 137 (359)
Q Consensus 134 ~~p~ 137 (359)
++-.
T Consensus 82 ti~v 85 (431)
T PRK15076 82 AIQV 85 (431)
T ss_pred eeee
Confidence 8843
No 352
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=96.77 E-value=0.005 Score=58.80 Aligned_cols=113 Identities=20% Similarity=0.207 Sum_probs=68.7
Q ss_pred ccCCCCeEEEEcCChhhHHHHHHHHHCCCcEE-EEcCC----------ccchhHHH---hC-------------CCccCC
Q 018213 67 ADELPGRIGFLGMGIMGTPMAQNLLKAGCDVT-VWNRT----------KSKCDPLI---SL-------------GAKYQP 119 (359)
Q Consensus 67 ~~~~~~~igiiG~G~iG~~ia~~l~~~g~~V~-~~d~~----------~~~~~~~~---~~-------------g~~~~~ 119 (359)
.+++++||.|-|+|++|...|+.|.+.|.+|+ +.|.+ .+++..+. +. +.+...
T Consensus 233 ~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~~ 312 (454)
T PTZ00079 233 DSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYVP 312 (454)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEeC
Confidence 44788999999999999999999999999988 66665 22221111 10 222222
Q ss_pred CHHHHh-hcCCEEEEeeCChhHHHHHhcccccccccC-CCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213 120 SPDEVA-ASCDVTFAMLADPESAMDVACGKHGAASGM-GPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (359)
Q Consensus 120 ~~~~~~-~~aDivi~~~p~~~~~~~~~~~~~~~~~~l-~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (359)
.++++ -+|||.+-|.- .+.| +.+-.+.+ +.++-+|-.+...|.+. +..+.|.++|+.+++
T Consensus 313 -~~~~~~~~cDI~iPcA~-----~n~I--~~~~a~~l~~~~ak~V~EgAN~p~t~-eA~~~L~~~GI~~~P 374 (454)
T PTZ00079 313 -GKKPWEVPCDIAFPCAT-----QNEI--NLEDAKLLIKNGCKLVAEGANMPTTI-EATHLFKKNGVIFCP 374 (454)
T ss_pred -CcCcccCCccEEEeccc-----cccC--CHHHHHHHHHcCCeEEEecCCCCCCH-HHHHHHHHCCcEEEC
Confidence 22222 36899887762 2233 22222222 34555555555555555 455788888988875
No 353
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.76 E-value=0.005 Score=56.97 Aligned_cols=64 Identities=14% Similarity=0.173 Sum_probs=45.6
Q ss_pred eEEEEcC-ChhhHHHHHHHHHCCC-------cEEEEcCCc--cchhHH----HhC------CCccCCCHHHHhhcCCEEE
Q 018213 73 RIGFLGM-GIMGTPMAQNLLKAGC-------DVTVWNRTK--SKCDPL----ISL------GAKYQPSPDEVAASCDVTF 132 (359)
Q Consensus 73 ~igiiG~-G~iG~~ia~~l~~~g~-------~V~~~d~~~--~~~~~~----~~~------g~~~~~~~~~~~~~aDivi 132 (359)
||+|||+ |.+|..++..|...|. ++.++|+++ +..+.. .+. +.....+..+.+++||+|+
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiVV 81 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVAI 81 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEEE
Confidence 6999999 9999999999987652 499999976 432211 111 1222245668889999999
Q ss_pred EeeC
Q 018213 133 AMLA 136 (359)
Q Consensus 133 ~~~p 136 (359)
++.-
T Consensus 82 itAG 85 (323)
T cd00704 82 LVGA 85 (323)
T ss_pred EeCC
Confidence 8763
No 354
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.72 E-value=0.021 Score=56.37 Aligned_cols=66 Identities=18% Similarity=0.193 Sum_probs=47.7
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccc--hhHHHhC--CCccC--CCHHHHhhcCCEEEEe
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK--CDPLISL--GAKYQ--PSPDEVAASCDVTFAM 134 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~--~~~~~~~--g~~~~--~~~~~~~~~aDivi~~ 134 (359)
+++++|.|+|.|..|.++|+.|...|++|.++|..... .+.+.+. |+... ....+.+.++|+||..
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~s 76 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALS 76 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEEC
Confidence 45678999999999999999999999999999975432 2334343 33322 1234556789999986
No 355
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.71 E-value=0.0083 Score=58.92 Aligned_cols=115 Identities=22% Similarity=0.223 Sum_probs=67.8
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccc-----hhHHHhCCCccCC-CHHHHhhcCCEEEEee---CChh
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK-----CDPLISLGAKYQP-SPDEVAASCDVTFAML---ADPE 139 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~-----~~~~~~~g~~~~~-~~~~~~~~aDivi~~~---p~~~ 139 (359)
.++++|.|||.|.+|..+|+.|...|++|+++|+++.. .+.+.+.|+.... ...+....+|+||++. |..+
T Consensus 14 ~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~Gi~~~~~ 93 (480)
T PRK01438 14 WQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPTLPEDTDLVVTSPGWRPDAP 93 (480)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCccccCCCCEEEECCCcCCCCH
Confidence 56689999999999999999999999999999965421 1234455665431 1111345689999876 3333
Q ss_pred HHHHHh------ccccccc-ccCCC---C-CEEEeccCCChHHHHHHHHHHHhcC
Q 018213 140 SAMDVA------CGKHGAA-SGMGP---G-KGYVDVSTVDGDTSKLINGHIKATG 183 (359)
Q Consensus 140 ~~~~~~------~~~~~~~-~~l~~---~-~~vi~~s~~~~~~~~~l~~~l~~~~ 183 (359)
.....- .++.+++ ..+.+ . .+-|.-|.|+..+..-+...|+..+
T Consensus 94 ~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~g 148 (480)
T PRK01438 94 LLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAAG 148 (480)
T ss_pred HHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHcC
Confidence 222211 0111222 22222 1 2334445566666666666776543
No 356
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=96.71 E-value=0.0049 Score=49.34 Aligned_cols=115 Identities=19% Similarity=0.250 Sum_probs=62.6
Q ss_pred CCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHh--------CCCccCCCHHHHhh--cCCEEEEeeCChh
Q 018213 71 PGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLIS--------LGAKYQPSPDEVAA--SCDVTFAMLADPE 139 (359)
Q Consensus 71 ~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~--------~g~~~~~~~~~~~~--~aDivi~~~p~~~ 139 (359)
.++|.|+|+|.+|+.+++.|+..|. +++++|.+.=....+.. -|...+....+.+. ..++=+.+.|...
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~~ 81 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEKI 81 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESHC
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeeccc
Confidence 3689999999999999999999997 68999875432222211 12221212222222 1233333333222
Q ss_pred HHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCC
Q 018213 140 SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG 193 (359)
Q Consensus 140 ~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 193 (359)
....+ .+++ ++-.++|++.. .......+.+.+.+.++.++.+.+.+
T Consensus 82 -~~~~~---~~~~---~~~d~vi~~~d-~~~~~~~l~~~~~~~~~p~i~~~~~g 127 (135)
T PF00899_consen 82 -DEENI---EELL---KDYDIVIDCVD-SLAARLLLNEICREYGIPFIDAGVNG 127 (135)
T ss_dssp -SHHHH---HHHH---HTSSEEEEESS-SHHHHHHHHHHHHHTT-EEEEEEEET
T ss_pred -ccccc---cccc---cCCCEEEEecC-CHHHHHHHHHHHHHcCCCEEEEEeec
Confidence 11112 2222 23346776643 45556677778888888887765443
No 357
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=96.68 E-value=0.0041 Score=54.70 Aligned_cols=64 Identities=28% Similarity=0.345 Sum_probs=49.3
Q ss_pred EEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccc--hhHHHhCCCcc-------CCCHHHHhhcCCEEEEeeCC
Q 018213 74 IGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSK--CDPLISLGAKY-------QPSPDEVAASCDVTFAMLAD 137 (359)
Q Consensus 74 igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~--~~~~~~~g~~~-------~~~~~~~~~~aDivi~~~p~ 137 (359)
|.|+|. |.+|+.+++.|...+++|.+..|++.+ .+.+.+.|+.. .+++.++++.+|.|++++|.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~ 74 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPP 74 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSC
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCc
Confidence 679985 999999999999999999999998643 34455556543 12455678899999998873
No 358
>PRK14030 glutamate dehydrogenase; Provisional
Probab=96.67 E-value=0.0076 Score=57.64 Aligned_cols=111 Identities=17% Similarity=0.188 Sum_probs=68.4
Q ss_pred cCCCCeEEEEcCChhhHHHHHHHHHCCCcEEE--------EcCC---ccchh---HHHhC-------------CCccCCC
Q 018213 68 DELPGRIGFLGMGIMGTPMAQNLLKAGCDVTV--------WNRT---KSKCD---PLISL-------------GAKYQPS 120 (359)
Q Consensus 68 ~~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~--------~d~~---~~~~~---~~~~~-------------g~~~~~~ 120 (359)
+++++||+|-|+|++|...|+.|.+.|.+|++ ||.+ .++++ ..++. +.+.. +
T Consensus 225 ~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i-~ 303 (445)
T PRK14030 225 DIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF-A 303 (445)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc-C
Confidence 48889999999999999999999999999988 6743 22211 11111 22222 2
Q ss_pred HHHHh-hcCCEEEEeeCChhHHHHHhcccccccccC-CCC-CEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213 121 PDEVA-ASCDVTFAMLADPESAMDVACGKHGAASGM-GPG-KGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (359)
Q Consensus 121 ~~~~~-~~aDivi~~~p~~~~~~~~~~~~~~~~~~l-~~~-~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (359)
.++++ .+|||++-|. +.+.| +.+-.+.+ +.+ .+|+--+++ |.+. +..+.|.++|+.+++
T Consensus 304 ~~~~~~~~cDVliPcA-----l~n~I--~~~na~~l~~~~ak~V~EgAN~-p~t~-eA~~iL~~rGI~~vP 365 (445)
T PRK14030 304 GKKPWEQKVDIALPCA-----TQNEL--NGEDADKLIKNGVLCVAEVSNM-GCTA-EAIDKFIAAKQLFAP 365 (445)
T ss_pred CccceeccccEEeecc-----ccccC--CHHHHHHHHHcCCeEEEeCCCC-CCCH-HHHHHHHHCCCEEeC
Confidence 23333 3689988766 23333 22222333 122 355555565 6555 455788889988875
No 359
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=96.67 E-value=0.014 Score=56.92 Aligned_cols=112 Identities=10% Similarity=0.042 Sum_probs=73.4
Q ss_pred CCCCeEEEEcC----------ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC----------------------CCc
Q 018213 69 ELPGRIGFLGM----------GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL----------------------GAK 116 (359)
Q Consensus 69 ~~~~~igiiG~----------G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~----------------------g~~ 116 (359)
+.+++|+|+|+ ..-...+++.|...|.+|.+||+.-...+.-... ++.
T Consensus 322 ~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (473)
T PLN02353 322 VSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQVS 401 (473)
T ss_pred cCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhccccccccccccccccccccccee
Confidence 67799999997 3467899999999999999999864332110011 234
Q ss_pred cCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecC
Q 018213 117 YQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA 189 (359)
Q Consensus 117 ~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~ 189 (359)
.+.+.+++++++|+|+++++. .+.+.+-+ +.+...|++..+|+|.-+... . +.+++.|+.|.+.
T Consensus 402 ~~~~~~~a~~~aD~vvi~t~~-~ef~~l~~--~~~~~~m~~~~~viD~rn~l~--~----~~~~~~G~~y~~~ 465 (473)
T PLN02353 402 VVWDAYEATKGAHGICILTEW-DEFKTLDY--QKIYDNMQKPAFVFDGRNVLD--H----EKLREIGFIVYSI 465 (473)
T ss_pred eeCCHHHHhcCCCEEEECCCC-hHhcccCH--HHHHHhccCCCEEEECCCCCC--H----HHHHhCCcEEEEe
Confidence 556777899999999999964 44443310 333445665568999755432 1 2333447777663
No 360
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.66 E-value=0.015 Score=56.49 Aligned_cols=117 Identities=15% Similarity=0.108 Sum_probs=69.9
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccc--hhHHHh--CCCccC--CCHHHHhhcCCEEEEeeC---Chh
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK--CDPLIS--LGAKYQ--PSPDEVAASCDVTFAMLA---DPE 139 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~--~~~~~~--~g~~~~--~~~~~~~~~aDivi~~~p---~~~ 139 (359)
+.+++|.|+|.|.+|.++|+.|.+.|++|.++|.++.. .+.+.+ .|+... ...++...++|+||...- ..+
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~~~~p 82 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQP 82 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCCCCCH
Confidence 45688999999999999999999999999999976543 233333 255432 112344568999998652 223
Q ss_pred HHHHHhc------cccccccc-CC--CCCEE-EeccCCChHHHHHHHHHHHhcCCe
Q 018213 140 SAMDVAC------GKHGAASG-MG--PGKGY-VDVSTVDGDTSKLINGHIKATGAS 185 (359)
Q Consensus 140 ~~~~~~~------~~~~~~~~-l~--~~~~v-i~~s~~~~~~~~~l~~~l~~~~~~ 185 (359)
....... +..+++.. ++ +..+| |.-|.|+..+..-+...|+..|..
T Consensus 83 ~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~~ 138 (445)
T PRK04308 83 DIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLD 138 (445)
T ss_pred HHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcCCC
Confidence 3333220 11122222 22 12333 444556666666666777765543
No 361
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=96.66 E-value=0.012 Score=55.51 Aligned_cols=68 Identities=15% Similarity=0.187 Sum_probs=46.3
Q ss_pred CCCeEEEEcC-ChhhHHHHHHHHHCCC-c----EE--EE--cCCccchhHHH----h------CCCccCCCHHHHhhcCC
Q 018213 70 LPGRIGFLGM-GIMGTPMAQNLLKAGC-D----VT--VW--NRTKSKCDPLI----S------LGAKYQPSPDEVAASCD 129 (359)
Q Consensus 70 ~~~~igiiG~-G~iG~~ia~~l~~~g~-~----V~--~~--d~~~~~~~~~~----~------~g~~~~~~~~~~~~~aD 129 (359)
+..||+|||+ |++|..+|..+...|. . |. ++ |++.++.+... + ..+....+..+.+++||
T Consensus 43 ~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kdaD 122 (387)
T TIGR01757 43 KTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFEDAD 122 (387)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCCCC
Confidence 3478999999 9999999999987663 2 33 44 77766544221 1 12332344557789999
Q ss_pred EEEEeeCC
Q 018213 130 VTFAMLAD 137 (359)
Q Consensus 130 ivi~~~p~ 137 (359)
+||++...
T Consensus 123 IVVitAG~ 130 (387)
T TIGR01757 123 WALLIGAK 130 (387)
T ss_pred EEEECCCC
Confidence 99997743
No 362
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=96.64 E-value=0.01 Score=55.63 Aligned_cols=109 Identities=18% Similarity=0.263 Sum_probs=68.7
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCcc------------------chhHHHhC-CCccCCCHHHHh-hcC
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS------------------KCDPLISL-GAKYQPSPDEVA-ASC 128 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~------------------~~~~~~~~-g~~~~~~~~~~~-~~a 128 (359)
++++||+|=|+|++|+..|+.|...|.+|++++-+.. +...+.+. +.+.... ++++ .+|
T Consensus 205 l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~-~e~~~~~c 283 (411)
T COG0334 205 LEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITN-EELLEVDC 283 (411)
T ss_pred cCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEccc-cccccccC
Confidence 7899999999999999999999999999988876554 11222222 3444433 4443 479
Q ss_pred CEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213 129 DVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (359)
Q Consensus 129 Divi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (359)
||++=|. +.+.| +.+-.+.++.. +|+--++++ .+. +..+.+.++|+-|++
T Consensus 284 DIl~PcA-----~~n~I--~~~na~~l~ak-~V~EgAN~P-~t~-eA~~i~~erGIl~~P 333 (411)
T COG0334 284 DILIPCA-----LENVI--TEDNADQLKAK-IVVEGANGP-TTP-EADEILLERGILVVP 333 (411)
T ss_pred cEEcccc-----ccccc--chhhHHHhhhc-EEEeccCCC-CCH-HHHHHHHHCCCEEcC
Confidence 9987555 33444 33334455544 555555544 333 334555578877664
No 363
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=96.64 E-value=0.012 Score=48.60 Aligned_cols=95 Identities=13% Similarity=0.117 Sum_probs=61.1
Q ss_pred CCeEEEEcC--ChhhHHHHHHHHHCCCcEEEEcCCccc--h--hHH-------HhCC--CccCCCHHHHhhcCCEEEEee
Q 018213 71 PGRIGFLGM--GIMGTPMAQNLLKAGCDVTVWNRTKSK--C--DPL-------ISLG--AKYQPSPDEVAASCDVTFAML 135 (359)
Q Consensus 71 ~~~igiiG~--G~iG~~ia~~l~~~g~~V~~~d~~~~~--~--~~~-------~~~g--~~~~~~~~~~~~~aDivi~~~ 135 (359)
+++|++||= +++..+++..+..+|+++.++.+..-. . +.+ .+.| +..++++++.++++|+|+.-.
T Consensus 2 gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDvvy~~~ 81 (158)
T PF00185_consen 2 GLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADVVYTDR 81 (158)
T ss_dssp TEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SEEEEES
T ss_pred CCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCEEEEcC
Confidence 578999993 899999999999999999998875421 1 111 1123 466789999999999998876
Q ss_pred CCh---hHHHHHh------cccccccccCCCCCEEEecc
Q 018213 136 ADP---ESAMDVA------CGKHGAASGMGPGKGYVDVS 165 (359)
Q Consensus 136 p~~---~~~~~~~------~~~~~~~~~l~~~~~vi~~s 165 (359)
--+ .+-..-+ .-++++++..+++.+|+++.
T Consensus 82 ~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~L 120 (158)
T PF00185_consen 82 WQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPL 120 (158)
T ss_dssp SSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESS
T ss_pred cccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCC
Confidence 330 1111111 01344555566677777663
No 364
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=96.64 E-value=0.013 Score=54.55 Aligned_cols=36 Identities=31% Similarity=0.458 Sum_probs=33.2
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCc
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK 104 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~ 104 (359)
+...+|.|||+|.+|+.+|..|+..|. +++++|.+.
T Consensus 22 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 22 LREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 677899999999999999999999998 899999864
No 365
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=96.63 E-value=0.006 Score=53.61 Aligned_cols=36 Identities=25% Similarity=0.376 Sum_probs=32.2
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCc
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK 104 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~ 104 (359)
+...+|.|+|+|.+|+.+|+.|+..|. +++++|.+.
T Consensus 19 L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 19 LKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 667899999999999999999999996 788888754
No 366
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=96.62 E-value=0.0089 Score=54.77 Aligned_cols=80 Identities=21% Similarity=0.242 Sum_probs=53.4
Q ss_pred CCeEEEEcC-ChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhccc
Q 018213 71 PGRIGFLGM-GIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGK 148 (359)
Q Consensus 71 ~~~igiiG~-G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~ 148 (359)
+.+|+|||. |..|..+.+.|..... ++.....+..+ . . .+.++.+.++|++|+|+|.. ....+.
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~--~-----~---~~~~~~~~~~DvvFlalp~~-~s~~~~--- 67 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK--D-----A---AARRELLNAADVAILCLPDD-AAREAV--- 67 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC--c-----c---cCchhhhcCCCEEEECCCHH-HHHHHH---
Confidence 368999995 9999999999998763 44433332211 1 1 23345667899999999844 444444
Q ss_pred ccccccCCCCCEEEeccCC
Q 018213 149 HGAASGMGPGKGYVDVSTV 167 (359)
Q Consensus 149 ~~~~~~l~~~~~vi~~s~~ 167 (359)
+++ .+.|..|||.|..
T Consensus 68 ~~~---~~~g~~VIDlSad 83 (313)
T PRK11863 68 ALI---DNPATRVIDASTA 83 (313)
T ss_pred HHH---HhCCCEEEECChh
Confidence 333 2468899999743
No 367
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=96.61 E-value=0.0068 Score=55.51 Aligned_cols=62 Identities=18% Similarity=0.260 Sum_probs=44.6
Q ss_pred EEcCChhhHHHHHHHHHCCC--cEEEEcCCccchhHHH----h------CCCccCCCHHHHhhcCCEEEEeeCC
Q 018213 76 FLGMGIMGTPMAQNLLKAGC--DVTVWNRTKSKCDPLI----S------LGAKYQPSPDEVAASCDVTFAMLAD 137 (359)
Q Consensus 76 iiG~G~iG~~ia~~l~~~g~--~V~~~d~~~~~~~~~~----~------~g~~~~~~~~~~~~~aDivi~~~p~ 137 (359)
|||+|++|..+|..|...+. ++.++|++.+..+... + .......+..+.+++||+|+++.-.
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag~ 74 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAGA 74 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCCC
Confidence 68999999999999988775 6999999876543322 1 1123333445678999999997743
No 368
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.59 E-value=0.0063 Score=56.56 Aligned_cols=89 Identities=17% Similarity=0.224 Sum_probs=53.8
Q ss_pred CCCeEEEEcC-ChhhHHHHHHHHHCCCcE---EEEcCCccchh-HHHhCC--CccC-CCHHHHhhcCCEEEEeeCChhHH
Q 018213 70 LPGRIGFLGM-GIMGTPMAQNLLKAGCDV---TVWNRTKSKCD-PLISLG--AKYQ-PSPDEVAASCDVTFAMLADPESA 141 (359)
Q Consensus 70 ~~~~igiiG~-G~iG~~ia~~l~~~g~~V---~~~d~~~~~~~-~~~~~g--~~~~-~~~~~~~~~aDivi~~~p~~~~~ 141 (359)
++++|+|+|+ |.+|..+.+.|.+.+|.+ ..... .+... .+...+ .... .+..+ ++++|++++++| +...
T Consensus 3 ~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s-~~~aG~~l~~~~~~l~~~~~~~~~-~~~vD~vFla~p-~~~s 79 (336)
T PRK05671 3 QPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLAS-SESAGHSVPFAGKNLRVREVDSFD-FSQVQLAFFAAG-AAVS 79 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEEC-cccCCCeeccCCcceEEeeCChHH-hcCCCEEEEcCC-HHHH
Confidence 3478999996 999999999999776642 23322 22111 111111 1111 12233 478999999998 4444
Q ss_pred HHHhcccccccccCCCCCEEEeccCC
Q 018213 142 MDVACGKHGAASGMGPGKGYVDVSTV 167 (359)
Q Consensus 142 ~~~~~~~~~~~~~l~~~~~vi~~s~~ 167 (359)
..++ +.+ .+.|..+||.|..
T Consensus 80 ~~~v---~~~---~~~G~~VIDlS~~ 99 (336)
T PRK05671 80 RSFA---EKA---RAAGCSVIDLSGA 99 (336)
T ss_pred HHHH---HHH---HHCCCeEEECchh
Confidence 5554 333 3468899999754
No 369
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=96.57 E-value=0.0077 Score=55.77 Aligned_cols=65 Identities=15% Similarity=0.172 Sum_probs=44.2
Q ss_pred eEEEEcC-ChhhHHHHHHHHHCCC-------cEEEEcCCccc--hhH----HHh------CCCccCCCHHHHhhcCCEEE
Q 018213 73 RIGFLGM-GIMGTPMAQNLLKAGC-------DVTVWNRTKSK--CDP----LIS------LGAKYQPSPDEVAASCDVTF 132 (359)
Q Consensus 73 ~igiiG~-G~iG~~ia~~l~~~g~-------~V~~~d~~~~~--~~~----~~~------~g~~~~~~~~~~~~~aDivi 132 (359)
+|+|||+ |.+|..++..|...|. ++.++|+++.. .+. +.+ .++....+..+.+++||+||
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV 80 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI 80 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence 4899999 9999999999987553 59999986542 211 111 01212224457788999999
Q ss_pred EeeCC
Q 018213 133 AMLAD 137 (359)
Q Consensus 133 ~~~p~ 137 (359)
++.-.
T Consensus 81 itAG~ 85 (324)
T TIGR01758 81 LVGAF 85 (324)
T ss_pred EcCCC
Confidence 97743
No 370
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=96.56 E-value=0.015 Score=52.67 Aligned_cols=46 Identities=24% Similarity=0.361 Sum_probs=38.4
Q ss_pred CCCeEEEEcCChhhHHHHHHHHHCCCc-EEEEcCCccchhHHHhCCC
Q 018213 70 LPGRIGFLGMGIMGTPMAQNLLKAGCD-VTVWNRTKSKCDPLISLGA 115 (359)
Q Consensus 70 ~~~~igiiG~G~iG~~ia~~l~~~g~~-V~~~d~~~~~~~~~~~~g~ 115 (359)
.+.+|.|+|.|.+|...++.++..|.+ |++.++++++.+...+.|+
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga 166 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGA 166 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC
Confidence 567899999999999999999999987 8888888777666665555
No 371
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=96.53 E-value=0.013 Score=54.99 Aligned_cols=89 Identities=28% Similarity=0.348 Sum_probs=55.3
Q ss_pred CCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcC---CccchhHHHhCCCccCCCHH----H--HhhcCCEEEEeeCChhH
Q 018213 70 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNR---TKSKCDPLISLGAKYQPSPD----E--VAASCDVTFAMLADPES 140 (359)
Q Consensus 70 ~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~---~~~~~~~~~~~g~~~~~~~~----~--~~~~aDivi~~~p~~~~ 140 (359)
.+.+|.|+|.|.+|...++.++..|.+|++.++ ++++.+.+.+.|+......+ + .....|+|+-++..+..
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~ 251 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATGVPPL 251 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcCCHHH
Confidence 567899999999999999999999999999988 45555555555654321111 0 11235677766643222
Q ss_pred HHHHhcccccccccCCCCCEEEecc
Q 018213 141 AMDVACGKHGAASGMGPGKGYVDVS 165 (359)
Q Consensus 141 ~~~~~~~~~~~~~~l~~~~~vi~~s 165 (359)
+... +..++++..++.++
T Consensus 252 ~~~~-------~~~l~~~G~~v~~G 269 (355)
T cd08230 252 AFEA-------LPALAPNGVVILFG 269 (355)
T ss_pred HHHH-------HHHccCCcEEEEEe
Confidence 2222 24455555555443
No 372
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=96.53 E-value=0.0074 Score=54.56 Aligned_cols=31 Identities=32% Similarity=0.503 Sum_probs=26.9
Q ss_pred eEEEEcCChhhHHHHHHHHHCCC-cEEEEcCC
Q 018213 73 RIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRT 103 (359)
Q Consensus 73 ~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~ 103 (359)
||.|||+|.+|..+|+.|+..|. +++++|.+
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D 32 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSG 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 58999999999999999999996 57777653
No 373
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.52 E-value=0.014 Score=56.81 Aligned_cols=116 Identities=16% Similarity=0.120 Sum_probs=68.8
Q ss_pred CCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccc--hhHHHh--CCCccCC--CHHHHhhcCCEEEEee--CC-hhHH
Q 018213 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK--CDPLIS--LGAKYQP--SPDEVAASCDVTFAML--AD-PESA 141 (359)
Q Consensus 71 ~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~--~~~~~~--~g~~~~~--~~~~~~~~aDivi~~~--p~-~~~~ 141 (359)
+-+|.|||.|..|.++|+.|.+.|++|+++|..... .+.+.+ .|+.... ...+.+.++|+||..- |. .+..
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp~i~~~~p~~ 85 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIISPGLALDTPAL 85 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECCCCCCCCHHH
Confidence 356999999999999999999999999999975432 223443 2555421 1234567899887754 22 2223
Q ss_pred HHHhc------ccccccccCCCCCE-EEeccCCChHHHHHHHHHHHhcCCee
Q 018213 142 MDVAC------GKHGAASGMGPGKG-YVDVSTVDGDTSKLINGHIKATGASF 186 (359)
Q Consensus 142 ~~~~~------~~~~~~~~l~~~~~-vi~~s~~~~~~~~~l~~~l~~~~~~~ 186 (359)
...-. +..+++..+.+..+ -|.-|.|+..+..-+...|+..|..+
T Consensus 86 ~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~ 137 (448)
T PRK03803 86 RAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKAAGKRV 137 (448)
T ss_pred HHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCe
Confidence 22210 11123222223333 34445566666766777777665443
No 374
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=96.51 E-value=0.016 Score=54.11 Aligned_cols=47 Identities=15% Similarity=0.201 Sum_probs=39.5
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhCCC
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGA 115 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~ 115 (359)
..+.+|.|+|+|.+|...++.++..|. +|++.++++++.+.+.+.|+
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa 215 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGA 215 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCC
Confidence 356899999999999999999999998 58889998887776666664
No 375
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=96.48 E-value=0.011 Score=52.44 Aligned_cols=116 Identities=16% Similarity=0.129 Sum_probs=65.0
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhC--------CCccCCCHHHHhh--cCCEEEEeeCC
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL--------GAKYQPSPDEVAA--SCDVTFAMLAD 137 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~--------g~~~~~~~~~~~~--~aDivi~~~p~ 137 (359)
++..+|.|||+|.+|+.+++.|+..|. +++++|.+.-....+..+ |-..+....+-++ +.++-+.+.+.
T Consensus 30 L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~~ 109 (245)
T PRK05690 30 LKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETINA 109 (245)
T ss_pred hcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEec
Confidence 677899999999999999999999996 788888764333322211 2111211112121 23444444322
Q ss_pred hhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCC
Q 018213 138 PESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVS 192 (359)
Q Consensus 138 ~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~ 192 (359)
.-. ..-+ .+ .++.-.+||+++- .+.....+.+.....++.++.+.+.
T Consensus 110 ~i~-~~~~---~~---~~~~~DiVi~~~D-~~~~r~~ln~~~~~~~ip~v~~~~~ 156 (245)
T PRK05690 110 RLD-DDEL---AA---LIAGHDLVLDCTD-NVATRNQLNRACFAAKKPLVSGAAI 156 (245)
T ss_pred cCC-HHHH---HH---HHhcCCEEEecCC-CHHHHHHHHHHHHHhCCEEEEeeec
Confidence 111 1111 11 1233457777753 4444555667777777777775443
No 376
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=96.48 E-value=0.0041 Score=58.67 Aligned_cols=35 Identities=29% Similarity=0.452 Sum_probs=31.9
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCC
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRT 103 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~ 103 (359)
++..+|.|||+|.+|..++..|+..|. +++++|.+
T Consensus 39 l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 39 LHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 667899999999999999999999996 78898876
No 377
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=96.47 E-value=0.0063 Score=55.44 Aligned_cols=64 Identities=17% Similarity=0.265 Sum_probs=44.8
Q ss_pred CeEEEEcCChhhHHHHHHHHHCC--CcEEEEcCCccchhHHH----h------CCCccCC-CHHHHhhcCCEEEEee
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKAG--CDVTVWNRTKSKCDPLI----S------LGAKYQP-SPDEVAASCDVTFAML 135 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~g--~~V~~~d~~~~~~~~~~----~------~g~~~~~-~~~~~~~~aDivi~~~ 135 (359)
+||+|||.|++|+++|..|...+ .++.++|+..+..+... + ....... ...+.++++|+|+++.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitA 77 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITA 77 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeC
Confidence 57999999999999999996655 48999999855433211 1 0122222 1245678999999988
No 378
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=96.45 E-value=0.013 Score=53.36 Aligned_cols=78 Identities=17% Similarity=0.214 Sum_probs=52.7
Q ss_pred CeEEEEcC-ChhhHHHHHHHHHCC-CcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccc
Q 018213 72 GRIGFLGM-GIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKH 149 (359)
Q Consensus 72 ~~igiiG~-G~iG~~ia~~l~~~g-~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~ 149 (359)
.||+|+|. |..|..+.+.|.... +++.....+.. .. ..+.+++++++|++++|+|.. ....+. +
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~---------~~-~~~~~~~~~~~D~vFlalp~~-~s~~~~---~ 67 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR---------KD-AAERAKLLNAADVAILCLPDD-AAREAV---S 67 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc---------cC-cCCHhHhhcCCCEEEECCCHH-HHHHHH---H
Confidence 36999996 999999999999865 34443322211 11 124556778899999999844 555554 3
Q ss_pred cccccCCCCCEEEeccC
Q 018213 150 GAASGMGPGKGYVDVST 166 (359)
Q Consensus 150 ~~~~~l~~~~~vi~~s~ 166 (359)
.+ ...|..|||.|.
T Consensus 68 ~~---~~~g~~VIDlSa 81 (310)
T TIGR01851 68 LV---DNPNTCIIDAST 81 (310)
T ss_pred HH---HhCCCEEEECCh
Confidence 32 346889999974
No 379
>PRK08328 hypothetical protein; Provisional
Probab=96.45 E-value=0.024 Score=49.85 Aligned_cols=117 Identities=16% Similarity=0.205 Sum_probs=69.2
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhC--------CCc-cCCCHHHHhh--cCCEEEEeeC
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL--------GAK-YQPSPDEVAA--SCDVTFAMLA 136 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~--------g~~-~~~~~~~~~~--~aDivi~~~p 136 (359)
++..+|.|+|+|.+|+.++..|+..|. +++++|.+.-....+..+ |.. ......+-++ +.|+.+.+.+
T Consensus 25 L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~~ 104 (231)
T PRK08328 25 LKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFV 104 (231)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEEEe
Confidence 667899999999999999999999996 688898765443333221 110 0000011111 4677766654
Q ss_pred ChhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCC
Q 018213 137 DPESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG 193 (359)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 193 (359)
..- ..+-+ .+ .+++-.+||++.-. +.....+.+.+...++.++.+.+.+
T Consensus 105 ~~~-~~~~~---~~---~l~~~D~Vid~~d~-~~~r~~l~~~~~~~~ip~i~g~~~g 153 (231)
T PRK08328 105 GRL-SEENI---DE---VLKGVDVIVDCLDN-FETRYLLDDYAHKKGIPLVHGAVEG 153 (231)
T ss_pred ccC-CHHHH---HH---HHhcCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEeecc
Confidence 221 11111 11 23445688877544 4444556666777788888766554
No 380
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=96.45 E-value=0.022 Score=50.39 Aligned_cols=117 Identities=14% Similarity=0.161 Sum_probs=67.6
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhC--------CCccCCCHHHHhh--cCCEEEEeeCC
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL--------GAKYQPSPDEVAA--SCDVTFAMLAD 137 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~--------g~~~~~~~~~~~~--~aDivi~~~p~ 137 (359)
++..+|.|+|+|.+|+.++..|+..|. +++++|.+.-....+..+ |-..+....+.++ +.++-+.+.+.
T Consensus 22 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~~ 101 (240)
T TIGR02355 22 LKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPINA 101 (240)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEec
Confidence 677899999999999999999999996 688888765433322211 2111111122222 34554544432
Q ss_pred hhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCC
Q 018213 138 PESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG 193 (359)
Q Consensus 138 ~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 193 (359)
.-.... + . +.++.-.+||++.- .+.....+.+.+...++.++.+...+
T Consensus 102 ~i~~~~-~---~---~~~~~~DlVvd~~D-~~~~r~~ln~~~~~~~ip~v~~~~~g 149 (240)
T TIGR02355 102 KLDDAE-L---A---ALIAEHDIVVDCTD-NVEVRNQLNRQCFAAKVPLVSGAAIR 149 (240)
T ss_pred cCCHHH-H---H---HHhhcCCEEEEcCC-CHHHHHHHHHHHHHcCCCEEEEEecc
Confidence 111111 1 1 12334457777753 44555567777777788887755443
No 381
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=96.42 E-value=0.0078 Score=52.80 Aligned_cols=116 Identities=16% Similarity=0.117 Sum_probs=68.9
Q ss_pred cccCCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhH-----HHh-CCCccCCCHHHHhhcCCEE-EEeeCC
Q 018213 66 EADELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP-----LIS-LGAKYQPSPDEVAASCDVT-FAMLAD 137 (359)
Q Consensus 66 ~~~~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~-----~~~-~g~~~~~~~~~~~~~aDiv-i~~~p~ 137 (359)
..+++.-+++|+|+ |.||..+|+.|...+......-|+.+.... +.+ .+.....|++..+.+.|++ +++. .
T Consensus 162 GidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~~~~~i~s~d~~~~~e~i~v~vAs-~ 240 (351)
T COG5322 162 GIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEELGRGKIMSLDYALPQEDILVWVAS-M 240 (351)
T ss_pred CcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhcccccCCCeeeeccccccccceEEEEee-c
Confidence 34577789999997 999999999999988877777765543222 111 1333333444444455554 4444 2
Q ss_pred hhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhc-CCeeecCCCCCC
Q 018213 138 PESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKAT-GASFLEAPVSGS 194 (359)
Q Consensus 138 ~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~ 194 (359)
++ ...| + -..+||+.+++|-+.-.-+++ ..+.. ++..++..+...
T Consensus 241 ~~--g~~I--~---pq~lkpg~~ivD~g~P~dvd~-----~vk~~~~V~Ii~GGlV~~ 286 (351)
T COG5322 241 PK--GVEI--F---PQHLKPGCLIVDGGYPKDVDT-----SVKNVGGVRIIPGGLVEH 286 (351)
T ss_pred CC--Ccee--c---hhhccCCeEEEcCCcCccccc-----ccccCCCeEEecCccccC
Confidence 21 1222 1 135899999998865443332 33333 477777655443
No 382
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=96.41 E-value=0.0056 Score=57.12 Aligned_cols=86 Identities=15% Similarity=0.184 Sum_probs=53.6
Q ss_pred eEEEEc-CChhhHHHHHHHHHCCCcE---EEEcCCccchhHHHhCCC--ccCC-CHHHHhhcCCEEEEeeCChhHHHHHh
Q 018213 73 RIGFLG-MGIMGTPMAQNLLKAGCDV---TVWNRTKSKCDPLISLGA--KYQP-SPDEVAASCDVTFAMLADPESAMDVA 145 (359)
Q Consensus 73 ~igiiG-~G~iG~~ia~~l~~~g~~V---~~~d~~~~~~~~~~~~g~--~~~~-~~~~~~~~aDivi~~~p~~~~~~~~~ 145 (359)
+|+||| .|.+|..+.+.|.+.+|++ .++.+..+.-+.+...+. ...+ +. +.+.++|++++|+| ........
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~-~~~~~~D~v~~a~g-~~~s~~~a 78 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKI-ESFEGIDIALFSAG-GSVSKEFA 78 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCCh-HHhcCCCEEEECCC-HHHHHHHH
Confidence 489999 5999999999999988763 333343322222221221 1111 22 33478999999997 44555554
Q ss_pred cccccccccCCCCCEEEeccC
Q 018213 146 CGKHGAASGMGPGKGYVDVST 166 (359)
Q Consensus 146 ~~~~~~~~~l~~~~~vi~~s~ 166 (359)
+.+ ++.|..|||.|.
T Consensus 79 ---~~~---~~~G~~VID~ss 93 (339)
T TIGR01296 79 ---PKA---AKCGAIVIDNTS 93 (339)
T ss_pred ---HHH---HHCCCEEEECCH
Confidence 332 346788998874
No 383
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=96.38 E-value=0.02 Score=55.45 Aligned_cols=113 Identities=21% Similarity=0.191 Sum_probs=67.8
Q ss_pred eEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccc-hhH----HH-hCCCccC--CCHHHHhhcCCEEEEee--CC-hhHH
Q 018213 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK-CDP----LI-SLGAKYQ--PSPDEVAASCDVTFAML--AD-PESA 141 (359)
Q Consensus 73 ~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~-~~~----~~-~~g~~~~--~~~~~~~~~aDivi~~~--p~-~~~~ 141 (359)
+|.|||.|..|.++|+.|.+.|++|+++|..+.. ... +. ..|+... .+ .+.+.++|+||..- |. .+..
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~-~~~~~~~d~vv~sp~i~~~~p~~ 79 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLH-LEDLNNADLVVKSPGIPPDHPLV 79 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCc-hHHhccCCEEEECCCCCCCCHHH
Confidence 4889999999999999999999999999975442 111 22 2366442 23 34567899888754 22 2233
Q ss_pred HHHh------ccccccccc-CCCCCEEEeccCCChHHHHHHHHHHHhcCCee
Q 018213 142 MDVA------CGKHGAASG-MGPGKGYVDVSTVDGDTSKLINGHIKATGASF 186 (359)
Q Consensus 142 ~~~~------~~~~~~~~~-l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~ 186 (359)
...- .+..+++.. ++...+-|.-|.|+..+..-+...|+..+..+
T Consensus 80 ~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~ 131 (433)
T TIGR01087 80 QAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAGLKA 131 (433)
T ss_pred HHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcCCCe
Confidence 2221 011222222 22223444446667777777777787765543
No 384
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=96.36 E-value=0.027 Score=48.27 Aligned_cols=116 Identities=18% Similarity=0.187 Sum_probs=65.6
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhC--------CCccCCCHHHHhh--cCCEEEEeeCC
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL--------GAKYQPSPDEVAA--SCDVTFAMLAD 137 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~--------g~~~~~~~~~~~~--~aDivi~~~p~ 137 (359)
++.++|.|+|+|.+|..+++.|+..|. +++++|.+.-....+... |-..+....+.++ +.|+-+.+.+.
T Consensus 19 L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~~ 98 (197)
T cd01492 19 LRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTD 98 (197)
T ss_pred HHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEec
Confidence 667899999999999999999999997 588998764322221110 1111111111111 34554444322
Q ss_pred hhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCC
Q 018213 138 PESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG 193 (359)
Q Consensus 138 ~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 193 (359)
.- .... .++ ++.-.++|++. ........+.+.+.+.++.++.+...|
T Consensus 99 ~~--~~~~---~~~---~~~~dvVi~~~-~~~~~~~~ln~~c~~~~ip~i~~~~~G 145 (197)
T cd01492 99 DI--SEKP---EEF---FSQFDVVVATE-LSRAELVKINELCRKLGVKFYATGVHG 145 (197)
T ss_pred Cc--cccH---HHH---HhCCCEEEECC-CCHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 11 1111 111 22334666653 345555667777777888887766554
No 385
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=96.36 E-value=0.01 Score=56.21 Aligned_cols=117 Identities=21% Similarity=0.177 Sum_probs=65.3
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhC--------CCccCCCHHHHhh--cCCEEEEeeCC
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL--------GAKYQPSPDEVAA--SCDVTFAMLAD 137 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~--------g~~~~~~~~~~~~--~aDivi~~~p~ 137 (359)
+...+|.|+|+|.+|+.++..|+..|. +++++|++.-....+..+ |...+....+.++ +.++-+...+.
T Consensus 133 l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~ 212 (376)
T PRK08762 133 LLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQE 212 (376)
T ss_pred HhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEec
Confidence 677899999999999999999999997 789999863222222111 1111111222221 23343333321
Q ss_pred hhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCC
Q 018213 138 PESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG 193 (359)
Q Consensus 138 ~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 193 (359)
.-. ...+ .+ .++.-.+||+++-. +..-..+.+.+...++.++.+.+.+
T Consensus 213 ~~~-~~~~---~~---~~~~~D~Vv~~~d~-~~~r~~ln~~~~~~~ip~i~~~~~g 260 (376)
T PRK08762 213 RVT-SDNV---EA---LLQDVDVVVDGADN-FPTRYLLNDACVKLGKPLVYGAVFR 260 (376)
T ss_pred cCC-hHHH---HH---HHhCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEEecc
Confidence 111 1111 11 12334577777544 3334456677777788888765554
No 386
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=96.35 E-value=0.0058 Score=55.47 Aligned_cols=65 Identities=15% Similarity=0.051 Sum_probs=44.9
Q ss_pred eEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC----CCccCCCHHHHh------hc-CCEEEEeeCC
Q 018213 73 RIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL----GAKYQPSPDEVA------AS-CDVTFAMLAD 137 (359)
Q Consensus 73 ~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~----g~~~~~~~~~~~------~~-aDivi~~~p~ 137 (359)
+|.|+|. |.+|+.+++.|.+.|++|.+..|++++....... ...-.+++.+++ .. +|.|+++.|.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~ 77 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPP 77 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccCCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCC
Confidence 3788886 9999999999999999999999988653211000 111122444555 45 8999888764
No 387
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=96.33 E-value=0.1 Score=46.82 Aligned_cols=144 Identities=13% Similarity=0.049 Sum_probs=75.9
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCC-CcEEEEcCCccchhHHHhC--------CCccCCCHHHHhh--cCCEEEEeeCC
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAG-CDVTVWNRTKSKCDPLISL--------GAKYQPSPDEVAA--SCDVTFAMLAD 137 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g-~~V~~~d~~~~~~~~~~~~--------g~~~~~~~~~~~~--~aDivi~~~p~ 137 (359)
++..+|.|+|+|.+|+.+|..|+..| -+++++|.+.-....+..+ |-..+.-..+-+. +.++-+...+.
T Consensus 28 L~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~~ 107 (268)
T PRK15116 28 FADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVDD 107 (268)
T ss_pred hcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEec
Confidence 67789999999999999999999999 5799998764332222111 1111111111111 23433333322
Q ss_pred hhHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEec-----CCHH
Q 018213 138 PESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAA-----GDKS 212 (359)
Q Consensus 138 ~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~~~ 212 (359)
.- +.+-+ .+++. .+-.+||++.- .+.....+.+.+...++.++...-.++. .+ +..+-++ ....
T Consensus 108 ~i-~~e~~---~~ll~--~~~D~VIdaiD-~~~~k~~L~~~c~~~~ip~I~~gGag~k---~d-p~~~~~~di~~t~~~p 176 (268)
T PRK15116 108 FI-TPDNV---AEYMS--AGFSYVIDAID-SVRPKAALIAYCRRNKIPLVTTGGAGGQ---ID-PTQIQVVDLAKTIQDP 176 (268)
T ss_pred cc-ChhhH---HHHhc--CCCCEEEEcCC-CHHHHHHHHHHHHHcCCCEEEECCcccC---CC-CCeEEEEeeecccCCh
Confidence 10 11111 11111 12346776633 4444556888888888888864322221 11 2222222 1344
Q ss_pred HHHHHHHHHHH
Q 018213 213 LYNTVAPLLDI 223 (359)
Q Consensus 213 ~~~~v~~ll~~ 223 (359)
....++..|+.
T Consensus 177 la~~~R~~lr~ 187 (268)
T PRK15116 177 LAAKLRERLKS 187 (268)
T ss_pred HHHHHHHHHHH
Confidence 56788888876
No 388
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.33 E-value=0.015 Score=52.51 Aligned_cols=67 Identities=24% Similarity=0.327 Sum_probs=45.8
Q ss_pred CCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhH-HHhCCCccC----CCH---HHHhhcCCEEEEeeC
Q 018213 70 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDP-LISLGAKYQ----PSP---DEVAASCDVTFAMLA 136 (359)
Q Consensus 70 ~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~-~~~~g~~~~----~~~---~~~~~~aDivi~~~p 136 (359)
.+++|||+|+|.+|.-=.+..+++|++|+++|++..+.++ +...|+..+ .+. +++.+.-|.++-+++
T Consensus 181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~v~ 255 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDTVS 255 (360)
T ss_pred CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCcceeee
Confidence 6789999999999988888888999999999998744444 343554321 121 233334566666664
No 389
>PRK07478 short chain dehydrogenase; Provisional
Probab=96.31 E-value=0.014 Score=51.82 Aligned_cols=42 Identities=21% Similarity=0.192 Sum_probs=35.4
Q ss_pred CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHH
Q 018213 69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (359)
Q Consensus 69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~ 110 (359)
++++++.|.|. |.||..+++.|.+.|++|++.+|++++.+.+
T Consensus 4 ~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~ 46 (254)
T PRK07478 4 LNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQL 46 (254)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 56678989986 8999999999999999999999987655443
No 390
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=96.30 E-value=0.025 Score=54.99 Aligned_cols=111 Identities=21% Similarity=0.222 Sum_probs=68.3
Q ss_pred EEEEcCChhhHH-HHHHHHHCCCcEEEEcCCcc-chhHHHhCCCccCC-CHHHHhhcCCEEEEee--CC-hhHHHHHh--
Q 018213 74 IGFLGMGIMGTP-MAQNLLKAGCDVTVWNRTKS-KCDPLISLGAKYQP-SPDEVAASCDVTFAML--AD-PESAMDVA-- 145 (359)
Q Consensus 74 igiiG~G~iG~~-ia~~l~~~g~~V~~~d~~~~-~~~~~~~~g~~~~~-~~~~~~~~aDivi~~~--p~-~~~~~~~~-- 145 (359)
|-|||.|..|.+ +|+.|.+.|++|+++|.+.. ..+.+.+.|+.... ...+.+.++|+||..- |. .+......
T Consensus 2 ~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~spgi~~~~p~~~~a~~~ 81 (448)
T TIGR01082 2 IHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALGIPIYIGHSAENLDDADVVVVSAAIKDDNPEIVEAKER 81 (448)
T ss_pred EEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCcCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHHHHHHc
Confidence 789999999998 99999999999999997543 22345555765532 2234456799988753 22 23333221
Q ss_pred ----ccccccccc-CCCCC-EEEeccCCChHHHHHHHHHHHhcCC
Q 018213 146 ----CGKHGAASG-MGPGK-GYVDVSTVDGDTSKLINGHIKATGA 184 (359)
Q Consensus 146 ----~~~~~~~~~-l~~~~-~vi~~s~~~~~~~~~l~~~l~~~~~ 184 (359)
.+..+++.. +++.. +-|.-|.|+..+..-+...|+..|.
T Consensus 82 ~i~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g~ 126 (448)
T TIGR01082 82 GIPVIRRAEMLAELMRFRHSIAVAGTHGKTTTTAMIAVILKEAGL 126 (448)
T ss_pred CCceEeHHHHHHHHHhcCcEEEEECCCChHHHHHHHHHHHHHcCC
Confidence 011223222 22223 3444456677777777777877664
No 391
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.30 E-value=0.018 Score=54.12 Aligned_cols=89 Identities=21% Similarity=0.287 Sum_probs=60.5
Q ss_pred CeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHh-CCCccCCCH-H--------HHh--hcCCEEEEeeCCh
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLIS-LGAKYQPSP-D--------EVA--ASCDVTFAMLADP 138 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~-~g~~~~~~~-~--------~~~--~~aDivi~~~p~~ 138 (359)
.++.|+|+|.||...+..++..|. +|++.|+++++++..++ .+.....+. + +.- ..+|+++.|+...
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G~~ 249 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVGSP 249 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCCCH
Confidence 389999999999999999999995 67888999988877766 344322221 1 111 2489999998644
Q ss_pred hHHHHHhcccccccccCCCCCEEEeccCC
Q 018213 139 ESAMDVACGKHGAASGMGPGKGYVDVSTV 167 (359)
Q Consensus 139 ~~~~~~~~~~~~~~~~l~~~~~vi~~s~~ 167 (359)
...... +..++++..++.++-.
T Consensus 250 ~~~~~a-------i~~~r~gG~v~~vGv~ 271 (350)
T COG1063 250 PALDQA-------LEALRPGGTVVVVGVY 271 (350)
T ss_pred HHHHHH-------HHHhcCCCEEEEEecc
Confidence 333333 3566777766666554
No 392
>PRK06139 short chain dehydrogenase; Provisional
Probab=96.30 E-value=0.015 Score=54.10 Aligned_cols=42 Identities=12% Similarity=0.182 Sum_probs=36.2
Q ss_pred CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHH
Q 018213 69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (359)
Q Consensus 69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~ 110 (359)
+.++++.|.|. |.||.++++.|.+.|++|++.+|++++.+.+
T Consensus 5 l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~ 47 (330)
T PRK06139 5 LHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAV 47 (330)
T ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 66688999987 8999999999999999999999987665443
No 393
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.29 E-value=0.04 Score=53.39 Aligned_cols=115 Identities=17% Similarity=0.134 Sum_probs=67.4
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccc--hhHHHhCCCccCC--CHHHHhhcCCEEEEeeCC---hhHH
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK--CDPLISLGAKYQP--SPDEVAASCDVTFAMLAD---PESA 141 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~--~~~~~~~g~~~~~--~~~~~~~~aDivi~~~p~---~~~~ 141 (359)
+.+++|.|+|.|..|.+.++.|.+.|++|+++|..+.. .+.+ +.|+.... ...+.++..|+||..-.- .+..
T Consensus 4 ~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l-~~g~~~~~~~~~~~~~~~~d~vv~spgi~~~~~~~ 82 (438)
T PRK03806 4 YQGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKL-PENVERHTGSLNDEWLLAADLIVASPGIALAHPSL 82 (438)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHH-hcCCEEEeCCCCHHHhcCCCEEEECCCCCCCCHHH
Confidence 45678999999999999999999999999999975432 1223 23554422 223445678877664411 1222
Q ss_pred HHHhc------ccccccccCCCCCEE-EeccCCChHHHHHHHHHHHhcCC
Q 018213 142 MDVAC------GKHGAASGMGPGKGY-VDVSTVDGDTSKLINGHIKATGA 184 (359)
Q Consensus 142 ~~~~~------~~~~~~~~l~~~~~v-i~~s~~~~~~~~~l~~~l~~~~~ 184 (359)
..... ...+++..+.+..+| |.-+.|+..+..-+...|+..|.
T Consensus 83 ~~a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g~ 132 (438)
T PRK03806 83 SAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGW 132 (438)
T ss_pred HHHHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHHcCC
Confidence 22210 011232222222333 44456677777777777776554
No 394
>PRK08265 short chain dehydrogenase; Provisional
Probab=96.27 E-value=0.02 Score=51.24 Aligned_cols=42 Identities=17% Similarity=0.196 Sum_probs=35.8
Q ss_pred CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHH
Q 018213 69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (359)
Q Consensus 69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~ 110 (359)
++++++.|.|. |.||.++++.|.+.|++|++.+|+++..+.+
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~ 46 (261)
T PRK08265 4 LAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAV 46 (261)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 66788999986 9999999999999999999999987654443
No 395
>PRK12939 short chain dehydrogenase; Provisional
Probab=96.27 E-value=0.017 Score=50.95 Aligned_cols=41 Identities=20% Similarity=0.191 Sum_probs=35.1
Q ss_pred CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhH
Q 018213 69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP 109 (359)
Q Consensus 69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~ 109 (359)
++++++.|+|. |.||+.+++.|.+.|++|++.+|++++.+.
T Consensus 5 ~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~ 46 (250)
T PRK12939 5 LAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARE 46 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 56788999986 999999999999999999999988765443
No 396
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=96.26 E-value=0.02 Score=50.88 Aligned_cols=92 Identities=12% Similarity=0.227 Sum_probs=58.5
Q ss_pred CCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhccccc
Q 018213 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHG 150 (359)
Q Consensus 71 ~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~ 150 (359)
..++-|+|.|.++.++++.+...||+|+++|.+++.... .....++.++... + ...+ .
T Consensus 100 ~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~~~~~-------------~~~~~~~~~~~~~--~---~~~~---~- 157 (246)
T TIGR02964 100 APHVVLFGAGHVGRALVRALAPLPCRVTWVDSREAEFPE-------------DLPDGVATLVTDE--P---EAEV---A- 157 (246)
T ss_pred CCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcccccc-------------cCCCCceEEecCC--H---HHHH---h-
Confidence 368999999999999999999999999999976542110 0012333222211 1 2222 1
Q ss_pred ccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeee
Q 018213 151 AASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFL 187 (359)
Q Consensus 151 ~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~ 187 (359)
.+.+++.+|-++.+...|...+..++++....|+
T Consensus 158 ---~~~~~t~vvi~th~h~~D~~~L~~aL~~~~~~YI 191 (246)
T TIGR02964 158 ---EAPPGSYFLVLTHDHALDLELCHAALRRGDFAYF 191 (246)
T ss_pred ---cCCCCcEEEEEeCChHHHHHHHHHHHhCCCCcEE
Confidence 2345667777778777788777777744444444
No 397
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=96.25 E-value=0.019 Score=50.33 Aligned_cols=84 Identities=17% Similarity=0.216 Sum_probs=58.8
Q ss_pred EEEEcCCccchhHHHh-CCCccCCCHHHHh-hcCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCC---ChHH
Q 018213 97 VTVWNRTKSKCDPLIS-LGAKYQPSPDEVA-ASCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTV---DGDT 171 (359)
Q Consensus 97 V~~~d~~~~~~~~~~~-~g~~~~~~~~~~~-~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~---~~~~ 171 (359)
+.+||+++++.+.+.+ .|+..++++++++ .+.|+|++|+|...+.+... ..++.|..++-.+.+ ....
T Consensus 5 vaV~D~~~e~a~~~a~~~g~~~~~d~~eLl~~~vDaVviatp~~~H~e~a~-------~aL~aGkhVl~~s~gAlad~e~ 77 (229)
T TIGR03855 5 AAVYDRNPKDAKELAERCGAKIVSDFDEFLPEDVDIVVEAASQEAVKEYAE-------KILKNGKDLLIMSVGALADREL 77 (229)
T ss_pred EEEECCCHHHHHHHHHHhCCceECCHHHHhcCCCCEEEECCChHHHHHHHH-------HHHHCCCCEEEECCcccCCHHH
Confidence 4579999888777655 4677788999987 57999999998554444333 345667666656655 3456
Q ss_pred HHHHHHHHHhcCCeee
Q 018213 172 SKLINGHIKATGASFL 187 (359)
Q Consensus 172 ~~~l~~~l~~~~~~~~ 187 (359)
.+++.+..++.|..+.
T Consensus 78 ~~~l~~aA~~~g~~l~ 93 (229)
T TIGR03855 78 RERLREVARSSGRKVY 93 (229)
T ss_pred HHHHHHHHHhcCCEEE
Confidence 7778888887776543
No 398
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=96.24 E-value=0.011 Score=54.85 Aligned_cols=90 Identities=17% Similarity=0.201 Sum_probs=55.1
Q ss_pred CCCeEEEEcC-ChhhHHHHHHHHH-CCCc---EEEEcCCccchhH--HHhCCCccC-CCHHHHhhcCCEEEEeeCChhHH
Q 018213 70 LPGRIGFLGM-GIMGTPMAQNLLK-AGCD---VTVWNRTKSKCDP--LISLGAKYQ-PSPDEVAASCDVTFAMLADPESA 141 (359)
Q Consensus 70 ~~~~igiiG~-G~iG~~ia~~l~~-~g~~---V~~~d~~~~~~~~--~~~~g~~~~-~~~~~~~~~aDivi~~~p~~~~~ 141 (359)
..++|||||+ |.+|+.+.+.|.. ..++ +..+......-+. +........ .+.++ +.+.|++++++| ....
T Consensus 4 ~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~~-~~~~Divf~a~~-~~~s 81 (347)
T PRK06728 4 KGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINS-FEGVDIAFFSAG-GEVS 81 (347)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHHH-hcCCCEEEECCC-hHHH
Confidence 3478999997 9999999999995 5666 4444322111111 111112211 13334 478999999997 4455
Q ss_pred HHHhcccccccccCCCCCEEEeccCC
Q 018213 142 MDVACGKHGAASGMGPGKGYVDVSTV 167 (359)
Q Consensus 142 ~~~~~~~~~~~~~l~~~~~vi~~s~~ 167 (359)
+.+. ..+ .+.|..+||.|..
T Consensus 82 ~~~~---~~~---~~~G~~VID~Ss~ 101 (347)
T PRK06728 82 RQFV---NQA---VSSGAIVIDNTSE 101 (347)
T ss_pred HHHH---HHH---HHCCCEEEECchh
Confidence 5554 322 3578899999743
No 399
>PRK05866 short chain dehydrogenase; Provisional
Probab=96.23 E-value=0.02 Score=52.29 Aligned_cols=42 Identities=21% Similarity=0.267 Sum_probs=35.9
Q ss_pred CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHH
Q 018213 69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (359)
Q Consensus 69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~ 110 (359)
+.+++|.|.|. |.||..+++.|++.|++|++.+|+.+..+.+
T Consensus 38 ~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~ 80 (293)
T PRK05866 38 LTGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAV 80 (293)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 66788999986 9999999999999999999999987654443
No 400
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=96.21 E-value=0.0029 Score=51.42 Aligned_cols=90 Identities=11% Similarity=0.121 Sum_probs=57.0
Q ss_pred CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcc
Q 018213 69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG 147 (359)
Q Consensus 69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~ 147 (359)
..+++|++||+ .. +++.|...+.++.++|++++..... .+.......++++.+||+|+++- +.-+.+-+
T Consensus 9 ~~~~~V~~VG~f~P----~~~~l~~~~~~v~v~d~~~~~~~~~--~~~~~~~~~~~~l~~aD~viiTG--sTlvN~Ti-- 78 (147)
T PF04016_consen 9 GPGDKVGMVGYFQP----LVEKLKERGAEVRVFDLNPDNIGEE--PGDVPDEDAEEILPWADVVIITG--STLVNGTI-- 78 (147)
T ss_dssp TTTSEEEEES--HC----CHHHHCCCCSEEEEEESSGGG--SS--CT-EEGGGHHHHGGG-SEEEEEC--HHCCTTTH--
T ss_pred cCCCEEEEEcCcHH----HHHHHhcCCCCEEEEECCCCCCCCC--CCcCCHHHHHHHHccCCEEEEEe--eeeecCCH--
Confidence 56689999996 23 6777877889999999998543221 11123446778999999999876 22333333
Q ss_pred cccccccCCCCCEEEeccCCCh
Q 018213 148 KHGAASGMGPGKGYVDVSTVDG 169 (359)
Q Consensus 148 ~~~~~~~l~~~~~vi~~s~~~~ 169 (359)
+.+++..++++.++-.+.+.+
T Consensus 79 -~~iL~~~~~~~~vil~GpS~~ 99 (147)
T PF04016_consen 79 -DDILELARNAREVILYGPSAP 99 (147)
T ss_dssp -HHHHHHTTTSSEEEEESCCGG
T ss_pred -HHHHHhCccCCeEEEEecCch
Confidence 445566666666666655544
No 401
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=96.21 E-value=0.023 Score=50.11 Aligned_cols=35 Identities=23% Similarity=0.366 Sum_probs=29.5
Q ss_pred CCCeEEEEcCChhhHHHHHHHHHCC-----------CcEEEEcCCc
Q 018213 70 LPGRIGFLGMGIMGTPMAQNLLKAG-----------CDVTVWNRTK 104 (359)
Q Consensus 70 ~~~~igiiG~G~iG~~ia~~l~~~g-----------~~V~~~d~~~ 104 (359)
+..+|.|||+|.+|+.+++.|+..| .+++++|.+.
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 4578999999999999999999863 2889998753
No 402
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=96.15 E-value=0.024 Score=52.90 Aligned_cols=89 Identities=12% Similarity=0.094 Sum_probs=63.4
Q ss_pred CCCCeEEEEcCC----------hhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCCh
Q 018213 69 ELPGRIGFLGMG----------IMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADP 138 (359)
Q Consensus 69 ~~~~~igiiG~G----------~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~ 138 (359)
+++++|||+|+- .-...++..|...|.+|.+||+....-......++....+.+++++.||++++++ ..
T Consensus 308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~~~~~~~~~~~~~~~~~aDaivi~t-ew 386 (414)
T COG1004 308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAFRNFPDVELESDAEEALKGADAIVINT-EW 386 (414)
T ss_pred CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHHHHhcCCCceEeCCHHHHHhhCCEEEEec-cH
Confidence 778999999863 3467789999999999999998543211111114678899999999999999999 56
Q ss_pred hHHHHHhcccccccccCCCCCEEEe
Q 018213 139 ESAMDVACGKHGAASGMGPGKGYVD 163 (359)
Q Consensus 139 ~~~~~~~~~~~~~~~~l~~~~~vi~ 163 (359)
++.+.+- -+.. .| ++.+|+|
T Consensus 387 ~ef~~~d---~~~~-~m-~~~~v~D 406 (414)
T COG1004 387 DEFRDLD---FEKL-LM-KTPVVID 406 (414)
T ss_pred HHHhccC---hhhh-hc-cCCEEEe
Confidence 6766653 2222 34 4556665
No 403
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.14 E-value=0.018 Score=54.01 Aligned_cols=89 Identities=19% Similarity=0.302 Sum_probs=54.0
Q ss_pred CCeEEEEc-CChhhHHHHHHHHHCC-CcEEEEcCCccchh-HHHh---C-----------CCcc-CCCHHHHhhcCCEEE
Q 018213 71 PGRIGFLG-MGIMGTPMAQNLLKAG-CDVTVWNRTKSKCD-PLIS---L-----------GAKY-QPSPDEVAASCDVTF 132 (359)
Q Consensus 71 ~~~igiiG-~G~iG~~ia~~l~~~g-~~V~~~d~~~~~~~-~~~~---~-----------g~~~-~~~~~~~~~~aDivi 132 (359)
+++|+|+| .|.+|+.+.+.|..+. +++.++.++..... .+.. . ...+ ..+.++ +.++|+|+
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~DvVf 81 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEA-VDDVDIVF 81 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHH-hcCCCEEE
Confidence 47899998 7999999999998765 37777644332211 1110 0 0111 113444 47899999
Q ss_pred EeeCChhHHHHHhcccccccccCCCCCEEEeccCC
Q 018213 133 AMLADPESAMDVACGKHGAASGMGPGKGYVDVSTV 167 (359)
Q Consensus 133 ~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~ 167 (359)
.++|.. ....+. +.+ ...|..+|+.|..
T Consensus 82 ~a~p~~-~s~~~~---~~~---~~~G~~vIDls~~ 109 (349)
T PRK08664 82 SALPSD-VAGEVE---EEF---AKAGKPVFSNASA 109 (349)
T ss_pred EeCChh-HHHHHH---HHH---HHCCCEEEECCch
Confidence 999853 334443 222 2357778888653
No 404
>PRK08223 hypothetical protein; Validated
Probab=96.14 E-value=0.033 Score=50.31 Aligned_cols=116 Identities=16% Similarity=0.094 Sum_probs=65.2
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhC--------CCccCCCHH----HHhhcCCEEEEee
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL--------GAKYQPSPD----EVAASCDVTFAML 135 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~--------g~~~~~~~~----~~~~~aDivi~~~ 135 (359)
++..+|.|||+|.+|+.++..|+..|. ++.++|.+.-....+..+ |-..+.... ++-...+|..+..
T Consensus 25 L~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~ 104 (287)
T PRK08223 25 LRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPE 104 (287)
T ss_pred HhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEec
Confidence 677899999999999999999999996 688888764332222211 211111122 2222344443333
Q ss_pred CChhHHHHHhcccccccccCCCCCEEEeccCCC-hHHHHHHHHHHHhcCCeeecCCCCC
Q 018213 136 ADPESAMDVACGKHGAASGMGPGKGYVDVSTVD-GDTSKLINGHIKATGASFLEAPVSG 193 (359)
Q Consensus 136 p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~-~~~~~~l~~~l~~~~~~~~~~~~~~ 193 (359)
..+++. ..+.++.-.+|||++-.. ...-..+.+.....++.++.+.+.+
T Consensus 105 ~l~~~n---------~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~~g 154 (287)
T PRK08223 105 GIGKEN---------ADAFLDGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAAPLG 154 (287)
T ss_pred ccCccC---------HHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEeccC
Confidence 222111 111223345777775443 2344456666777787777765544
No 405
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.13 E-value=0.019 Score=58.71 Aligned_cols=36 Identities=31% Similarity=0.513 Sum_probs=33.0
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCc
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK 104 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~ 104 (359)
.++++|+|||.|..|.+.|..|+..|++|+++++.+
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~ 360 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHP 360 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 356899999999999999999999999999999864
No 406
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.13 E-value=0.033 Score=54.24 Aligned_cols=115 Identities=17% Similarity=0.159 Sum_probs=64.8
Q ss_pred CCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhC-CCc-cCCCHHHHhhcCCEEEEee--C-ChhHHHHH
Q 018213 70 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISL-GAK-YQPSPDEVAASCDVTFAML--A-DPESAMDV 144 (359)
Q Consensus 70 ~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-g~~-~~~~~~~~~~~aDivi~~~--p-~~~~~~~~ 144 (359)
.+++|+|+|+|.-|.+.++.|.. |.+|+++|..+.....+.+. ... ......+.+.++|+||..- | ..+.....
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPgI~~~~p~~~~a 83 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLSPGIPLTHEIVKIA 83 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceeccCChhHhhCCCEEEECCCCCCCCHHHHHH
Confidence 35789999999999999999995 99999999654432222211 111 1111234566899888754 2 22223222
Q ss_pred h------ccccccc-ccCCCCCEE-EeccCCChHHHHHHHHHHHhcCCe
Q 018213 145 A------CGKHGAA-SGMGPGKGY-VDVSTVDGDTSKLINGHIKATGAS 185 (359)
Q Consensus 145 ~------~~~~~~~-~~l~~~~~v-i~~s~~~~~~~~~l~~~l~~~~~~ 185 (359)
- .++-+++ ..+++..+| |.-|.|+..+..-+...|+..|..
T Consensus 84 ~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~ 132 (454)
T PRK01368 84 KNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNSNGLD 132 (454)
T ss_pred HHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCC
Confidence 1 0112222 222222344 333556666676677777765543
No 407
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.13 E-value=0.035 Score=53.06 Aligned_cols=107 Identities=10% Similarity=0.093 Sum_probs=62.7
Q ss_pred CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHh--hcCCEEEEe--eCCh-hHHH---H
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVA--ASCDVTFAM--LADP-ESAM---D 143 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~--~~aDivi~~--~p~~-~~~~---~ 143 (359)
|+|.|+|+|..|.++|+.|. .|++|+++|..+... ...+.|+... . ++.. .++|+||.. +|.+ +... .
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~~~~~-~~~~~gi~~~-~-~~~~~~~~~d~vv~sp~i~~~~~~~~~a~~ 76 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDKFTES-HKDEEGNLLL-P-SNDFDPNKSDLEIPSPGIPPSHPLIQKAKN 76 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCCCCcc-chhhcCCEEe-c-HHHcCcCCCCEEEECCCCCCCCHHHHHHHH
Confidence 57999999999999999999 999999999654322 1223355543 2 2233 468988765 2322 2222 2
Q ss_pred HhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcC
Q 018213 144 VACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATG 183 (359)
Q Consensus 144 ~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~ 183 (359)
++ +..+++..+.+..+-|.-|.|+..+..-+...|...+
T Consensus 77 i~-~~~e~~~~~~~~~i~ITGT~GKTTTt~ml~~iL~~~g 115 (401)
T PRK03815 77 LI-SEYDYFYDVMPFSIWISGTNGKTTTTQMTTHLLEDFG 115 (401)
T ss_pred Hh-hHHHHHHHhcCCEEEEECCCcHHHHHHHHHHHHHHCC
Confidence 22 1122222222323444445666666666667777654
No 408
>PRK07774 short chain dehydrogenase; Provisional
Probab=96.13 E-value=0.019 Score=50.72 Aligned_cols=39 Identities=21% Similarity=0.161 Sum_probs=34.3
Q ss_pred CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccch
Q 018213 69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKC 107 (359)
Q Consensus 69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~ 107 (359)
++++++.|.|. |.||..+++.|.+.|++|++.+|+++..
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~ 43 (250)
T PRK07774 4 FDDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGA 43 (250)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 56688999987 9999999999999999999999986543
No 409
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=96.12 E-value=0.022 Score=50.59 Aligned_cols=40 Identities=25% Similarity=0.257 Sum_probs=34.9
Q ss_pred CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchh
Q 018213 69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD 108 (359)
Q Consensus 69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~ 108 (359)
+++++|.|.|. |.+|..+++.|.+.|++|++.+|++++.+
T Consensus 8 ~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~ 48 (255)
T PRK07523 8 LTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLA 48 (255)
T ss_pred CCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 56789999986 99999999999999999999999875443
No 410
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=96.11 E-value=0.014 Score=55.25 Aligned_cols=63 Identities=22% Similarity=0.229 Sum_probs=44.9
Q ss_pred CCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhH-HHhCCCc-cCCC---HHHHhhcCCEEEE
Q 018213 71 PGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDP-LISLGAK-YQPS---PDEVAASCDVTFA 133 (359)
Q Consensus 71 ~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~-~~~~g~~-~~~~---~~~~~~~aDivi~ 133 (359)
+++|||||.|..|+.++..+.+.|++|+++|.+++.... +.+.-+. ...+ +.++++.+|+|..
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~ 69 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITY 69 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEe
Confidence 378999999999999999999999999999987654222 2211110 1223 4567788998754
No 411
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=96.08 E-value=0.024 Score=50.36 Aligned_cols=41 Identities=22% Similarity=0.156 Sum_probs=35.4
Q ss_pred CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhH
Q 018213 69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP 109 (359)
Q Consensus 69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~ 109 (359)
+++++|.|.|. |.||+.+++.|.+.|++|++++|+++..+.
T Consensus 9 ~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~ 50 (256)
T PRK06124 9 LAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEA 50 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHH
Confidence 67789999986 899999999999999999999998754443
No 412
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=96.06 E-value=0.01 Score=58.93 Aligned_cols=34 Identities=24% Similarity=0.357 Sum_probs=30.0
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcC
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNR 102 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~ 102 (359)
++..+|.|||+|.+|..+|+.|++.|. +++++|.
T Consensus 336 L~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~ 370 (664)
T TIGR01381 336 YSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDN 370 (664)
T ss_pred HhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcC
Confidence 567899999999999999999999996 5777765
No 413
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.05 E-value=0.079 Score=51.41 Aligned_cols=112 Identities=17% Similarity=0.112 Sum_probs=65.7
Q ss_pred CeEEEEcCChhhHHHHHHHHHC--CCcEEEEcCCccch--hHHHhCCCccC-C-CHHHHhhcCCEEEEee--C-ChhHHH
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKA--GCDVTVWNRTKSKC--DPLISLGAKYQ-P-SPDEVAASCDVTFAML--A-DPESAM 142 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~--g~~V~~~d~~~~~~--~~~~~~g~~~~-~-~~~~~~~~aDivi~~~--p-~~~~~~ 142 (359)
++|.|||.|..|.+.++.|... |++|+++|..+... +.+. .|+... . ...+.+.++|+||... | ..+...
T Consensus 8 ~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~-~g~~~~~g~~~~~~~~~~d~vV~SpgI~~~~p~~~ 86 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLP-EDVELHSGGWNLEWLLEADLVVTNPGIALATPEIQ 86 (438)
T ss_pred ceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhh-cCCEEEeCCCChHHhccCCEEEECCCCCCCCHHHH
Confidence 6799999999999999999887 58899999754321 2343 266542 1 1234457899887754 2 223333
Q ss_pred HHhc------ccccccccCCCCCEE-EeccCCChHHHHHHHHHHHhcCC
Q 018213 143 DVAC------GKHGAASGMGPGKGY-VDVSTVDGDTSKLINGHIKATGA 184 (359)
Q Consensus 143 ~~~~------~~~~~~~~l~~~~~v-i~~s~~~~~~~~~l~~~l~~~~~ 184 (359)
.... +..+++..+.+..+| |.-|.|+..+..-+...|...|.
T Consensus 87 ~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g~ 135 (438)
T PRK04663 87 QVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKAAGV 135 (438)
T ss_pred HHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHHCCC
Confidence 2210 111232222233344 44455666666666677776544
No 414
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=96.04 E-value=0.015 Score=53.93 Aligned_cols=90 Identities=18% Similarity=0.205 Sum_probs=54.9
Q ss_pred CCCeEEEEcC-ChhhHHHHHHHHHCCC---cEEEEcCCccchhH--HHhCCCccCCCHHHH-hhcCCEEEEeeCChhHHH
Q 018213 70 LPGRIGFLGM-GIMGTPMAQNLLKAGC---DVTVWNRTKSKCDP--LISLGAKYQPSPDEV-AASCDVTFAMLADPESAM 142 (359)
Q Consensus 70 ~~~~igiiG~-G~iG~~ia~~l~~~g~---~V~~~d~~~~~~~~--~~~~g~~~~~~~~~~-~~~aDivi~~~p~~~~~~ 142 (359)
++++|+|||+ |.+|..+.+.|....| ++..+....+.-+. +......+. ++++. ..++|++++|+|. ....
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~-~~~~~~~~~~Dvvf~a~p~-~~s~ 80 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQ-DAAEFDWSQAQLAFFVAGR-EASA 80 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEE-eCchhhccCCCEEEECCCH-HHHH
Confidence 4588999997 9999999999998433 55544332211111 111112222 33343 2689999999974 3444
Q ss_pred HHhcccccccccCCCCCEEEeccCC
Q 018213 143 DVACGKHGAASGMGPGKGYVDVSTV 167 (359)
Q Consensus 143 ~~~~~~~~~~~~l~~~~~vi~~s~~ 167 (359)
.+. +++ .+.|..+||.|..
T Consensus 81 ~~~---~~~---~~~g~~VIDlS~~ 99 (336)
T PRK08040 81 AYA---EEA---TNAGCLVIDSSGL 99 (336)
T ss_pred HHH---HHH---HHCCCEEEECChH
Confidence 554 333 3468899999743
No 415
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=96.03 E-value=0.023 Score=50.57 Aligned_cols=42 Identities=17% Similarity=0.201 Sum_probs=35.9
Q ss_pred CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHH
Q 018213 69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (359)
Q Consensus 69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~ 110 (359)
++++++.|.|. |.||..+++.|.+.|++|.+.+|+++..+..
T Consensus 5 ~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~ 47 (262)
T PRK13394 5 LNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAV 47 (262)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHH
Confidence 56688999987 9999999999999999999999987654443
No 416
>PRK12828 short chain dehydrogenase; Provisional
Probab=96.02 E-value=0.043 Score=47.96 Aligned_cols=40 Identities=20% Similarity=0.190 Sum_probs=34.9
Q ss_pred CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchh
Q 018213 69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD 108 (359)
Q Consensus 69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~ 108 (359)
+++++|.|.|. |.+|..+++.|.+.|++|++.+|++++..
T Consensus 5 ~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~ 45 (239)
T PRK12828 5 LQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLS 45 (239)
T ss_pred CCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHH
Confidence 56789999985 99999999999999999999999876543
No 417
>PRK07109 short chain dehydrogenase; Provisional
Probab=96.02 E-value=0.026 Score=52.62 Aligned_cols=85 Identities=19% Similarity=0.233 Sum_probs=53.3
Q ss_pred CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEe--eCChhHHHHHh
Q 018213 69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAM--LADPESAMDVA 145 (359)
Q Consensus 69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~--~p~~~~~~~~~ 145 (359)
+++++|.|.|. |.||..+++.|.+.|++|++.+|++++.+.+.+. +.+ ...++.++. +.+..+++.++
T Consensus 6 l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~-------l~~--~g~~~~~v~~Dv~d~~~v~~~~ 76 (334)
T PRK07109 6 IGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAE-------IRA--AGGEALAVVADVADAEAVQAAA 76 (334)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHH--cCCcEEEEEecCCCHHHHHHHH
Confidence 56688999986 9999999999999999999999987654433221 111 122333332 33445566665
Q ss_pred cccccccccCCCCCEEEecc
Q 018213 146 CGKHGAASGMGPGKGYVDVS 165 (359)
Q Consensus 146 ~~~~~~~~~l~~~~~vi~~s 165 (359)
+.+.+.+.+=.++||.+
T Consensus 77 ---~~~~~~~g~iD~lInnA 93 (334)
T PRK07109 77 ---DRAEEELGPIDTWVNNA 93 (334)
T ss_pred ---HHHHHHCCCCCEEEECC
Confidence 44444444435666664
No 418
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.02 E-value=0.019 Score=50.34 Aligned_cols=42 Identities=21% Similarity=0.328 Sum_probs=35.6
Q ss_pred CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHH
Q 018213 69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (359)
Q Consensus 69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~ 110 (359)
+++++|.|.|. |.+|..+++.|.+.|++|++.+|++++.+.+
T Consensus 3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~ 45 (238)
T PRK05786 3 LKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRM 45 (238)
T ss_pred cCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 55688999986 8899999999999999999999987655433
No 419
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=96.00 E-value=0.016 Score=41.72 Aligned_cols=34 Identities=29% Similarity=0.522 Sum_probs=31.2
Q ss_pred eEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccc
Q 018213 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK 106 (359)
Q Consensus 73 ~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~ 106 (359)
+|.|||.|.+|..+|..|+..|.+|+++.+++.-
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRL 34 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence 5889999999999999999999999999987654
No 420
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=96.00 E-value=0.014 Score=57.57 Aligned_cols=42 Identities=24% Similarity=0.299 Sum_probs=35.6
Q ss_pred CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHH
Q 018213 69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (359)
Q Consensus 69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~ 110 (359)
..+++|.|.|. |.||+.+++.|.+.|++|++++|+.++.+.+
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l 120 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESL 120 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence 35678889986 9999999999999999999999987765443
No 421
>PRK05876 short chain dehydrogenase; Provisional
Probab=95.99 E-value=0.023 Score=51.41 Aligned_cols=40 Identities=13% Similarity=0.071 Sum_probs=34.1
Q ss_pred CCCCeEEEEc-CChhhHHHHHHHHHCCCcEEEEcCCccchh
Q 018213 69 ELPGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCD 108 (359)
Q Consensus 69 ~~~~~igiiG-~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~ 108 (359)
+.++++.|.| .|.||+++|+.|++.|++|++.+|+++..+
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~ 44 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLR 44 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 6678888887 589999999999999999999998865544
No 422
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=95.99 E-value=0.021 Score=50.67 Aligned_cols=60 Identities=18% Similarity=0.341 Sum_probs=45.5
Q ss_pred cCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhh-cCCEEEEeeCC
Q 018213 78 GMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAA-SCDVTFAMLAD 137 (359)
Q Consensus 78 G~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aDivi~~~p~ 137 (359)
|+|-||+.+...|.+.||+|++..|++.+........+...+.+++... .+|+||.-.-.
T Consensus 6 gTGlIG~~L~~~L~~~gh~v~iltR~~~~~~~~~~~~v~~~~~~~~~~~~~~DavINLAG~ 66 (297)
T COG1090 6 GTGLIGRALTARLRKGGHQVTILTRRPPKASQNLHPNVTLWEGLADALTLGIDAVINLAGE 66 (297)
T ss_pred cccchhHHHHHHHHhCCCeEEEEEcCCcchhhhcCccccccchhhhcccCCCCEEEECCCC
Confidence 6799999999999999999999999987765544333444445556555 69999976643
No 423
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=95.98 E-value=0.018 Score=51.27 Aligned_cols=40 Identities=23% Similarity=0.249 Sum_probs=34.6
Q ss_pred CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchh
Q 018213 69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD 108 (359)
Q Consensus 69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~ 108 (359)
..+|+|.|+|. |.+|+.+++.|...|++|++..|++++..
T Consensus 15 ~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~ 55 (251)
T PLN00141 15 VKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAK 55 (251)
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 55689999995 99999999999999999999988876543
No 424
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=95.97 E-value=0.077 Score=48.29 Aligned_cols=109 Identities=11% Similarity=0.051 Sum_probs=71.5
Q ss_pred CeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHH---HHHhc--
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESA---MDVAC-- 146 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~---~~~~~-- 146 (359)
++++|||.-.==..+++.|.+.|++|.+|.-.... ..+ .|+....+.++.+.++|+||+-+|-+..- +..+.
T Consensus 2 ~~~~v~ggd~r~~~~~~~l~~~g~~v~~~g~~~~~-~~~--~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~i~~~~~~~ 78 (287)
T TIGR02853 2 IHIAVIGGDARQLELIRKLEELDAKISLIGFDQLE-DGF--TGAVKCELLELDLTTLDVVILPVPGTSHDGKVATVFSNE 78 (287)
T ss_pred cEEEEEcccHHHHHHHHHHHHCCCEEEEEeccccc-ccc--ccceeecchhhhhccCCEEEECCccccCCceEecccccC
Confidence 67999999999999999999999999988753210 111 15666767777789999999999844321 11110
Q ss_pred ---ccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213 147 ---GKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (359)
Q Consensus 147 ---~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (359)
-++++++.++++.++. ++...+ .+...++++|+.+++
T Consensus 79 ~~~l~~~~l~~~~~~~~~~-~G~~~~----~l~~~a~~~gi~v~~ 118 (287)
T TIGR02853 79 KVVLTPELLESTKGHCTIY-VGISNP----YLEQLAADAGVKLIE 118 (287)
T ss_pred CccccHHHHHhcCCCCEEE-EecCCH----HHHHHHHHCCCeEEE
Confidence 0245667777655433 333333 344466677877773
No 425
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=95.97 E-value=0.028 Score=57.27 Aligned_cols=36 Identities=28% Similarity=0.468 Sum_probs=33.3
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCc
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK 104 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~ 104 (359)
.++++|.|||.|..|...|..|+..|++|++|++.+
T Consensus 308 ~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~ 343 (639)
T PRK12809 308 PRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHP 343 (639)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 357999999999999999999999999999999875
No 426
>PRK07890 short chain dehydrogenase; Provisional
Probab=95.95 E-value=0.026 Score=50.18 Aligned_cols=40 Identities=25% Similarity=0.271 Sum_probs=34.3
Q ss_pred CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchh
Q 018213 69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD 108 (359)
Q Consensus 69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~ 108 (359)
+.+++|.|.|. |.||+.+++.|.+.|++|++.+|+++..+
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~ 43 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLD 43 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 55688999985 89999999999999999999999875443
No 427
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=95.95 E-value=0.037 Score=49.49 Aligned_cols=42 Identities=21% Similarity=0.241 Sum_probs=35.4
Q ss_pred CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHH
Q 018213 69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (359)
Q Consensus 69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~ 110 (359)
++++++.|.|. |.||..+++.|.+.|++|++.+|++++.+.+
T Consensus 4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~ 46 (263)
T PRK06200 4 LHGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASL 46 (263)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 56688888886 8899999999999999999999987655443
No 428
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=95.95 E-value=0.029 Score=49.22 Aligned_cols=40 Identities=15% Similarity=0.223 Sum_probs=34.6
Q ss_pred CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchh
Q 018213 69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD 108 (359)
Q Consensus 69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~ 108 (359)
+.+++|.|.|. |.+|..+++.|.+.|++|++.+|++++.+
T Consensus 3 ~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~ 43 (246)
T PRK05653 3 LQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAE 43 (246)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHH
Confidence 45578999986 99999999999999999999999876543
No 429
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=95.92 E-value=0.059 Score=56.49 Aligned_cols=115 Identities=17% Similarity=0.152 Sum_probs=70.7
Q ss_pred CCCeEEEEcCChhhHHH-HHHHHHCCCcEEEEcCCcc-chhHHHhCCCccCC-CHHHHhhcCCEEEEee--C-ChhHHHH
Q 018213 70 LPGRIGFLGMGIMGTPM-AQNLLKAGCDVTVWNRTKS-KCDPLISLGAKYQP-SPDEVAASCDVTFAML--A-DPESAMD 143 (359)
Q Consensus 70 ~~~~igiiG~G~iG~~i-a~~l~~~g~~V~~~d~~~~-~~~~~~~~g~~~~~-~~~~~~~~aDivi~~~--p-~~~~~~~ 143 (359)
+.++|.|||.|..|.+. |+.|.+.|++|+++|.++. ..+.+.+.|+.... ...+.+.++|+||..- | ..+....
T Consensus 3 ~~~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~gi~~~~g~~~~~~~~~d~vV~SpgI~~~~p~~~~ 82 (809)
T PRK14573 3 KSLFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKGARFFLGHQEEHVPEDAVVVYSSSISKDNVEYLS 82 (809)
T ss_pred CcceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHcCCCCEEEECCCcCCCCHHHHH
Confidence 34579999999999997 9999999999999997543 23445556765532 2335567899988754 2 2233322
Q ss_pred Hhc------ccccccccC-CC-CCEEEeccCCChHHHHHHHHHHHhcCC
Q 018213 144 VAC------GKHGAASGM-GP-GKGYVDVSTVDGDTSKLINGHIKATGA 184 (359)
Q Consensus 144 ~~~------~~~~~~~~l-~~-~~~vi~~s~~~~~~~~~l~~~l~~~~~ 184 (359)
... +..+++..+ +. ..+-|.-|.|+..+..-+...|+..|.
T Consensus 83 a~~~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~g~ 131 (809)
T PRK14573 83 AKSRGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEAKK 131 (809)
T ss_pred HHHCCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhCCC
Confidence 210 111222222 22 234444466677777777777877654
No 430
>PRK05867 short chain dehydrogenase; Provisional
Probab=95.91 E-value=0.027 Score=50.01 Aligned_cols=42 Identities=21% Similarity=0.209 Sum_probs=35.6
Q ss_pred CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHH
Q 018213 69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (359)
Q Consensus 69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~ 110 (359)
++++++.|.|. |.||.++++.|.+.|++|++.+|+.++.+.+
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~ 49 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKL 49 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence 56788999987 8999999999999999999999987654443
No 431
>PRK06172 short chain dehydrogenase; Provisional
Probab=95.90 E-value=0.03 Score=49.68 Aligned_cols=41 Identities=17% Similarity=0.101 Sum_probs=35.3
Q ss_pred CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhH
Q 018213 69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP 109 (359)
Q Consensus 69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~ 109 (359)
+++++|.|.|. |.||..+++.|.+.|++|++.+|+++..+.
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~ 46 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEE 46 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 56789999986 899999999999999999999998765443
No 432
>PRK07326 short chain dehydrogenase; Provisional
Probab=95.90 E-value=0.029 Score=49.19 Aligned_cols=41 Identities=20% Similarity=0.178 Sum_probs=34.6
Q ss_pred CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhH
Q 018213 69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP 109 (359)
Q Consensus 69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~ 109 (359)
+.+++|.|+|. |.+|..+++.|...|++|++.+|++++.+.
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~ 45 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEE 45 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHH
Confidence 44578999985 999999999999999999999998765443
No 433
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=95.89 E-value=0.027 Score=51.59 Aligned_cols=89 Identities=17% Similarity=0.168 Sum_probs=52.8
Q ss_pred CeEEEEcC-ChhhHHHHHHHHHCCCc---EEEE--cCCccch-hHHHhCCCccCC--CHHHHhhcCCEEEEeeCChhHHH
Q 018213 72 GRIGFLGM-GIMGTPMAQNLLKAGCD---VTVW--NRTKSKC-DPLISLGAKYQP--SPDEVAASCDVTFAMLADPESAM 142 (359)
Q Consensus 72 ~~igiiG~-G~iG~~ia~~l~~~g~~---V~~~--d~~~~~~-~~~~~~g~~~~~--~~~~~~~~aDivi~~~p~~~~~~ 142 (359)
++|||+|. |.+|+.+.+.|....+. +.++ .|+..+. ..+....+..-. ......+++|+++.|.|. ...+
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~~~v~~~~~~~~~~~~~Divf~~ag~-~~s~ 80 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKSIGVPEDAADEFVFSDVDIVFFAAGG-SVSK 80 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCccccCccccccccccccCCEEEEeCch-HHHH
Confidence 68999985 99999999999985542 3333 3333322 222222122222 112334589999999974 4445
Q ss_pred HHhcccccccccCCCCCEEEeccCC
Q 018213 143 DVACGKHGAASGMGPGKGYVDVSTV 167 (359)
Q Consensus 143 ~~~~~~~~~~~~l~~~~~vi~~s~~ 167 (359)
.+. +++ .+.|.++||.++.
T Consensus 81 ~~~---p~~---~~~G~~VIdnsSa 99 (334)
T COG0136 81 EVE---PKA---AEAGCVVIDNSSA 99 (334)
T ss_pred HHH---HHH---HHcCCEEEeCCcc
Confidence 554 332 4567888887654
No 434
>PRK07825 short chain dehydrogenase; Provisional
Probab=95.88 E-value=0.034 Score=50.00 Aligned_cols=42 Identities=14% Similarity=0.104 Sum_probs=35.7
Q ss_pred CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHH
Q 018213 69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (359)
Q Consensus 69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~ 110 (359)
+++++|.|.|. |.||..+++.|.+.|++|++.+|++++.+..
T Consensus 3 ~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~ 45 (273)
T PRK07825 3 LRGKVVAITGGARGIGLATARALAALGARVAIGDLDEALAKET 45 (273)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 55688999986 9999999999999999999999987655443
No 435
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=95.88 E-value=0.089 Score=45.09 Aligned_cols=116 Identities=15% Similarity=0.217 Sum_probs=66.1
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHh----------CCCccCCC----HHHHhhcCCEEEE
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLIS----------LGAKYQPS----PDEVAASCDVTFA 133 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~----------~g~~~~~~----~~~~~~~aDivi~ 133 (359)
++..+|.|||+|.+|..+++.|...|. +++++|.+.-....+.. .|...+.. +.++ +.++-+.
T Consensus 17 L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~l--Np~v~i~ 94 (198)
T cd01485 17 LRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQEL--NPNVKLS 94 (198)
T ss_pred HhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHH--CCCCEEE
Confidence 666899999999999999999999996 58899875322222111 11111111 2222 3455444
Q ss_pred eeCChhH-HHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCC
Q 018213 134 MLADPES-AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSG 193 (359)
Q Consensus 134 ~~p~~~~-~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 193 (359)
..+.... ..... .++ +++-.+||++ .........+.+.+.+.++.++.+...|
T Consensus 95 ~~~~~~~~~~~~~---~~~---~~~~dvVi~~-~d~~~~~~~ln~~c~~~~ip~i~~~~~G 148 (198)
T cd01485 95 IVEEDSLSNDSNI---EEY---LQKFTLVIAT-EENYERTAKVNDVCRKHHIPFISCATYG 148 (198)
T ss_pred EEecccccchhhH---HHH---HhCCCEEEEC-CCCHHHHHHHHHHHHHcCCCEEEEEeec
Confidence 4432111 01111 122 2233567766 3345555667788888888887765544
No 436
>PLN02427 UDP-apiose/xylose synthase
Probab=95.87 E-value=0.021 Score=54.34 Aligned_cols=67 Identities=16% Similarity=0.309 Sum_probs=47.2
Q ss_pred CCCCeEEEEcC-ChhhHHHHHHHHHC-CCcEEEEcCCccchhHHHhC-------CCcc-------CCCHHHHhhcCCEEE
Q 018213 69 ELPGRIGFLGM-GIMGTPMAQNLLKA-GCDVTVWNRTKSKCDPLISL-------GAKY-------QPSPDEVAASCDVTF 132 (359)
Q Consensus 69 ~~~~~igiiG~-G~iG~~ia~~l~~~-g~~V~~~d~~~~~~~~~~~~-------g~~~-------~~~~~~~~~~aDivi 132 (359)
.+.|||.|.|. |-||+.+++.|.+. |++|++.+|+.++...+... ++.. ..++.++++++|+||
T Consensus 12 ~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~Vi 91 (386)
T PLN02427 12 IKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADLTI 91 (386)
T ss_pred ccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCEEE
Confidence 66789999985 99999999999988 59999999876544333211 1111 123456677889887
Q ss_pred Eee
Q 018213 133 AML 135 (359)
Q Consensus 133 ~~~ 135 (359)
-+.
T Consensus 92 HlA 94 (386)
T PLN02427 92 NLA 94 (386)
T ss_pred Ecc
Confidence 655
No 437
>PRK07454 short chain dehydrogenase; Provisional
Probab=95.86 E-value=0.03 Score=49.29 Aligned_cols=40 Identities=23% Similarity=0.265 Sum_probs=33.7
Q ss_pred CCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhH
Q 018213 70 LPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP 109 (359)
Q Consensus 70 ~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~ 109 (359)
+++++.|.|. |.+|..+++.|.+.|++|++.+|++++.+.
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~ 45 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEA 45 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 4567888885 999999999999999999999998765443
No 438
>PRK08589 short chain dehydrogenase; Validated
Probab=95.86 E-value=0.038 Score=49.81 Aligned_cols=39 Identities=15% Similarity=0.032 Sum_probs=33.5
Q ss_pred CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchh
Q 018213 69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD 108 (359)
Q Consensus 69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~ 108 (359)
++++++.|.|. |.||.++++.|.+.|++|++.+|+ +..+
T Consensus 4 l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~ 43 (272)
T PRK08589 4 LENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVS 43 (272)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHH
Confidence 56788989987 889999999999999999999987 4433
No 439
>PRK08862 short chain dehydrogenase; Provisional
Probab=95.85 E-value=0.035 Score=48.70 Aligned_cols=85 Identities=9% Similarity=0.043 Sum_probs=53.7
Q ss_pred CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEE--eeCChhHHHHHh
Q 018213 69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFA--MLADPESAMDVA 145 (359)
Q Consensus 69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~--~~p~~~~~~~~~ 145 (359)
++++++.|.|. +.||.++++.|++.|++|.+.+|++++.+...+. ..+. ..+++.. -+..+.+++.++
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~-------i~~~--~~~~~~~~~D~~~~~~~~~~~ 73 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQ-------CSAL--TDNVYSFQLKDFSQESIRHLF 73 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH-------HHhc--CCCeEEEEccCCCHHHHHHHH
Confidence 56688999987 5599999999999999999999987665544321 1110 1233222 233566677776
Q ss_pred cccccccccCC-CCCEEEecc
Q 018213 146 CGKHGAASGMG-PGKGYVDVS 165 (359)
Q Consensus 146 ~~~~~~~~~l~-~~~~vi~~s 165 (359)
+++.+.+. +=.++||..
T Consensus 74 ---~~~~~~~g~~iD~li~na 91 (227)
T PRK08862 74 ---DAIEQQFNRAPDVLVNNW 91 (227)
T ss_pred ---HHHHHHhCCCCCEEEECC
Confidence 55544443 224566654
No 440
>PRK06182 short chain dehydrogenase; Validated
Probab=95.83 E-value=0.051 Score=48.90 Aligned_cols=40 Identities=23% Similarity=0.160 Sum_probs=34.1
Q ss_pred CCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHH
Q 018213 71 PGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (359)
Q Consensus 71 ~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~ 110 (359)
++++.|.|. |.+|+.+++.|.+.|++|++.+|++++.+.+
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~ 43 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDL 43 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 477889985 9999999999999999999999987655443
No 441
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=95.83 E-value=0.26 Score=43.27 Aligned_cols=151 Identities=15% Similarity=0.106 Sum_probs=80.9
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhC--------CCccCCCHHHHhh--cCCEEEEeeC-
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISL--------GAKYQPSPDEVAA--SCDVTFAMLA- 136 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~--------g~~~~~~~~~~~~--~aDivi~~~p- 136 (359)
++..+|.|+|+|.+|+.+++.|+..|. +++++|.+.-....+..+ |-..+.-..+-+. +.++-+...+
T Consensus 9 L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~~ 88 (231)
T cd00755 9 LRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEE 88 (231)
T ss_pred HhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEeee
Confidence 667899999999999999999999996 788998764332222111 1111111111111 2333333332
Q ss_pred -Chh-HHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCCCccccCCceEEEecC-----
Q 018213 137 -DPE-SAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGSKKPAEDGQLIFLAAG----- 209 (359)
Q Consensus 137 -~~~-~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----- 209 (359)
.++ ....++ ..+-.+||++.- .......+.+.+.+.++.++...-.|... + +.-+-+..
T Consensus 89 ~i~~~~~~~l~---------~~~~D~VvdaiD-~~~~k~~L~~~c~~~~ip~I~s~g~g~~~---d-p~~i~i~di~~t~ 154 (231)
T cd00755 89 FLTPDNSEDLL---------GGDPDFVVDAID-SIRAKVALIAYCRKRKIPVISSMGAGGKL---D-PTRIRVADISKTS 154 (231)
T ss_pred ecCHhHHHHHh---------cCCCCEEEEcCC-CHHHHHHHHHHHHHhCCCEEEEeCCcCCC---C-CCeEEEccEeccc
Confidence 121 111222 112347777643 34444567788888888888754333321 1 11122221
Q ss_pred CHHHHHHHHHHHHHhC----CCeEEeCc
Q 018213 210 DKSLYNTVAPLLDIMG----KSRFYLGD 233 (359)
Q Consensus 210 ~~~~~~~v~~ll~~lg----~~~~~~g~ 233 (359)
.......++.-|+.-+ ..+++..+
T Consensus 155 ~~pla~~~R~~Lrk~~~~~~~~~v~S~E 182 (231)
T cd00755 155 GDPLARKVRKRLRKRGIFFGVPVVYSTE 182 (231)
T ss_pred cCcHHHHHHHHHHHcCCCCCeEEEeCCC
Confidence 2344567777777643 44666655
No 442
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=95.83 E-value=0.025 Score=52.89 Aligned_cols=89 Identities=17% Similarity=0.202 Sum_probs=52.4
Q ss_pred CeEEEEcC-ChhhHHHHHHHHHCC-CcEEEE-cCCccchhHHHhC-------CC----c--cC-CCHHHHhhcCCEEEEe
Q 018213 72 GRIGFLGM-GIMGTPMAQNLLKAG-CDVTVW-NRTKSKCDPLISL-------GA----K--YQ-PSPDEVAASCDVTFAM 134 (359)
Q Consensus 72 ~~igiiG~-G~iG~~ia~~l~~~g-~~V~~~-d~~~~~~~~~~~~-------g~----~--~~-~~~~~~~~~aDivi~~ 134 (359)
++|+|+|+ |.+|+.+++.|...+ +++... ++..+..+.+.+. +. . .+ ...++...++|+|+++
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVf~a 80 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDVDIVFSA 80 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccCCEEEEe
Confidence 47999995 999999999998866 577655 4432221111110 00 0 01 1112345789999999
Q ss_pred eCChhHHHHHhcccccccccCCCCCEEEeccCC
Q 018213 135 LADPESAMDVACGKHGAASGMGPGKGYVDVSTV 167 (359)
Q Consensus 135 ~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~ 167 (359)
+|.. ....+. +.+ ...|..+|+.|..
T Consensus 81 ~p~~-~s~~~~---~~~---~~~G~~VIDlsg~ 106 (341)
T TIGR00978 81 LPSE-VAEEVE---PKL---AEAGKPVFSNASN 106 (341)
T ss_pred CCHH-HHHHHH---HHH---HHCCCEEEECChh
Confidence 9844 444443 222 3457778877644
No 443
>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....
Probab=95.83 E-value=0.092 Score=42.05 Aligned_cols=99 Identities=14% Similarity=0.191 Sum_probs=68.2
Q ss_pred HHHHHHHHHCCCcEEEEcCCccc----hhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcccccccccCCCCC
Q 018213 84 TPMAQNLLKAGCDVTVWNRTKSK----CDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACGKHGAASGMGPGK 159 (359)
Q Consensus 84 ~~ia~~l~~~g~~V~~~d~~~~~----~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~ 159 (359)
=..+..|.+.|++|.+=.-.... -+.+.+.|+...++.++++.+||+|+-.-|.+ .+....|++|+
T Consensus 17 P~~v~~L~~~G~~V~VE~gaG~~a~fsD~~Y~~aGA~I~~~~~ev~~~adiIl~v~~p~----------~~e~~~l~~g~ 86 (136)
T PF05222_consen 17 PEDVKKLVKLGHEVLVESGAGEGAGFSDEEYEEAGAEIVSRAEEVYSDADIILKVKPPS----------EEELALLKPGQ 86 (136)
T ss_dssp HHHHHHHHHTTSEEEEETTTTGGGTB-HHHHHHTTEEEESSHHHHHTTSSEEEESS-------------GGGGGGS-TTC
T ss_pred HHHHHHHHhCCCEEEEECCCCCcCcccHHHHhhCCcEEecCchhhcccCCEEEEECCCC----------HHHHhhcCCCc
Confidence 34577888899999985443222 24566679999988889999999998765422 23346789999
Q ss_pred EEEeccCCChHHHHHHHHHHHhcCCeeecCCCCCC
Q 018213 160 GYVDVSTVDGDTSKLINGHIKATGASFLEAPVSGS 194 (359)
Q Consensus 160 ~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 194 (359)
+++.. ..+.....+.+.+.++++..++...+..
T Consensus 87 ~li~~--~~~~~~~~~~~~l~~~~it~~a~E~ipr 119 (136)
T PF05222_consen 87 TLIGF--LHPAQNKELLEALAKKGITAFALELIPR 119 (136)
T ss_dssp EEEEE----GGGHHHHHHHHHHCTEEEEEGGGSBS
T ss_pred EEEEe--eccccCHHHHHHHHHCCCEEEEhhhCcC
Confidence 99954 4444577888888889999988655443
No 444
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=95.82 E-value=0.028 Score=58.64 Aligned_cols=69 Identities=29% Similarity=0.391 Sum_probs=53.5
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccc---------------------hhHHHhCCCcc--------CC
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK---------------------CDPLISLGAKY--------QP 119 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~---------------------~~~~~~~g~~~--------~~ 119 (359)
-++++|+|||.|.-|.+-|..|.+.||.|++|.|+..- ++-+.++|+.+ .-
T Consensus 1783 rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~v 1862 (2142)
T KOG0399|consen 1783 RTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKHV 1862 (2142)
T ss_pred ccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeeccccccc
Confidence 56799999999999999999999999999999886431 11122345433 24
Q ss_pred CHHHHhhcCCEEEEeeCC
Q 018213 120 SPDEVAASCDVTFAMLAD 137 (359)
Q Consensus 120 ~~~~~~~~aDivi~~~p~ 137 (359)
+++++.+.-|.|++|+-.
T Consensus 1863 s~d~l~~~~daiv~a~gs 1880 (2142)
T KOG0399|consen 1863 SLDELKKENDAIVLATGS 1880 (2142)
T ss_pred cHHHHhhccCeEEEEeCC
Confidence 788999999999999843
No 445
>PRK07063 short chain dehydrogenase; Provisional
Probab=95.81 E-value=0.03 Score=49.89 Aligned_cols=42 Identities=12% Similarity=0.110 Sum_probs=35.4
Q ss_pred CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHH
Q 018213 69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (359)
Q Consensus 69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~ 110 (359)
++++++.|.|. |.||.++++.|.+.|++|++.+|+++..+..
T Consensus 5 l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~ 47 (260)
T PRK07063 5 LAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERA 47 (260)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 56788888885 8999999999999999999999987654443
No 446
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.80 E-value=0.029 Score=49.51 Aligned_cols=41 Identities=17% Similarity=0.167 Sum_probs=35.4
Q ss_pred CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhH
Q 018213 69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP 109 (359)
Q Consensus 69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~ 109 (359)
++++++.|+|. |.+|..+++.|.+.|++|++.+|++++.+.
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~ 44 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAER 44 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 55688999986 999999999999999999999998765443
No 447
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=95.80 E-value=0.03 Score=51.23 Aligned_cols=66 Identities=23% Similarity=0.242 Sum_probs=51.5
Q ss_pred CCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhH---HHhC------------CCccCCCHHHHhhcCCEEEE
Q 018213 70 LPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP---LISL------------GAKYQPSPDEVAASCDVTFA 133 (359)
Q Consensus 70 ~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~---~~~~------------g~~~~~~~~~~~~~aDivi~ 133 (359)
.+++|+|-|+ |-||+.+.+.|...||.|.+.-|+++..+. +.+. .+.-..++++++..||.|+-
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdgVfH 84 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDGVFH 84 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCCCEEEE
Confidence 5689999997 999999999999999999999998876322 2221 12234578899999999986
Q ss_pred ee
Q 018213 134 ML 135 (359)
Q Consensus 134 ~~ 135 (359)
+.
T Consensus 85 ~A 86 (327)
T KOG1502|consen 85 TA 86 (327)
T ss_pred eC
Confidence 54
No 448
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.80 E-value=0.061 Score=52.48 Aligned_cols=112 Identities=17% Similarity=0.167 Sum_probs=65.1
Q ss_pred eEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccc-h----hHHHhCCCccCC--CHH-----HHhhcCCEEEEeeCCh--
Q 018213 73 RIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK-C----DPLISLGAKYQP--SPD-----EVAASCDVTFAMLADP-- 138 (359)
Q Consensus 73 ~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~-~----~~~~~~g~~~~~--~~~-----~~~~~aDivi~~~p~~-- 138 (359)
+|.|||.|..|.+.|+.|.+.|++|.++|+.+.. . +.+.+.|+.... ..+ +.+.+.|.|+....-+
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~gi~~~ 81 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVSPGIPWD 81 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEECCCCCCC
Confidence 5899999999999999999999999999976532 1 124445665421 111 3567889988754222
Q ss_pred -hHHHHHhc------cccccc-ccCCCCCEE-EeccCCChHHHHHHHHHHHhcCC
Q 018213 139 -ESAMDVAC------GKHGAA-SGMGPGKGY-VDVSTVDGDTSKLINGHIKATGA 184 (359)
Q Consensus 139 -~~~~~~~~------~~~~~~-~~l~~~~~v-i~~s~~~~~~~~~l~~~l~~~~~ 184 (359)
+.....-. +..+++ ..+.+..+| |.-|.|+..+..-+...|...|.
T Consensus 82 ~~~~~~a~~~~i~v~~~~~~~~~~~~~~~~I~VTGT~GKTTTt~ml~~iL~~~g~ 136 (459)
T PRK02705 82 HPTLVELRERGIEVIGEIELAWRALKHIPWVGITGTNGKTTVTALLAHILQAAGL 136 (459)
T ss_pred CHHHHHHHHcCCcEEEhHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHHcCC
Confidence 22221110 011111 222233344 44455666666666667766543
No 449
>PRK07576 short chain dehydrogenase; Provisional
Probab=95.79 E-value=0.043 Score=49.20 Aligned_cols=41 Identities=27% Similarity=0.334 Sum_probs=35.2
Q ss_pred cCCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchh
Q 018213 68 DELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD 108 (359)
Q Consensus 68 ~~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~ 108 (359)
+++++++.|.|. |.||..+++.|...|++|++.+|+++..+
T Consensus 6 ~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~ 47 (264)
T PRK07576 6 DFAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVD 47 (264)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 366788999987 89999999999999999999999865443
No 450
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=95.79 E-value=0.057 Score=47.96 Aligned_cols=92 Identities=26% Similarity=0.278 Sum_probs=58.7
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCcc-CC----CHHHH-----hhcCCEEEEeeCCh
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY-QP----SPDEV-----AASCDVTFAMLADP 138 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~-~~----~~~~~-----~~~aDivi~~~p~~ 138 (359)
..+.+|.|+|.|.+|..+++.+...|.+|++.++++++.+.+.+.|... .+ +..+. -...|+++.+++..
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~ 212 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGP 212 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCCH
Confidence 3467899999999999999999999999999998876665555444321 10 11111 13468887777532
Q ss_pred hHHHHHhcccccccccCCCCCEEEeccCC
Q 018213 139 ESAMDVACGKHGAASGMGPGKGYVDVSTV 167 (359)
Q Consensus 139 ~~~~~~~~~~~~~~~~l~~~~~vi~~s~~ 167 (359)
...... +..++++..+++.+..
T Consensus 213 ~~~~~~-------~~~l~~~G~~v~~~~~ 234 (271)
T cd05188 213 ETLAQA-------LRLLRPGGRIVVVGGT 234 (271)
T ss_pred HHHHHH-------HHhcccCCEEEEEccC
Confidence 333222 3455666666666543
No 451
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=95.78 E-value=0.042 Score=48.87 Aligned_cols=42 Identities=14% Similarity=0.134 Sum_probs=35.4
Q ss_pred CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHH
Q 018213 69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (359)
Q Consensus 69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~ 110 (359)
+.++++.|.|. |.+|..+++.|.+.|++|++.+|+.+..+..
T Consensus 4 l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~ 46 (257)
T PRK07067 4 LQGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLA 46 (257)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHH
Confidence 55678989985 9999999999999999999999987655443
No 452
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=95.77 E-value=0.091 Score=48.09 Aligned_cols=67 Identities=19% Similarity=0.204 Sum_probs=51.5
Q ss_pred cCCCCeEEEEcCC---hhhHHHHHHHHHCCCcEEEEcCCccc-----hhHHHhCCC--ccCCCHHHHhhcCCEEEEe
Q 018213 68 DELPGRIGFLGMG---IMGTPMAQNLLKAGCDVTVWNRTKSK-----CDPLISLGA--KYQPSPDEVAASCDVTFAM 134 (359)
Q Consensus 68 ~~~~~~igiiG~G---~iG~~ia~~l~~~g~~V~~~d~~~~~-----~~~~~~~g~--~~~~~~~~~~~~aDivi~~ 134 (359)
.+++.+|+++|-| ++..+++..++.+|++|.+..+..-. .+.+.+.|. ..+++++++++++|+|..-
T Consensus 147 ~l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~~a~~~aDvvyt~ 223 (301)
T TIGR00670 147 RLDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETESLEEVIDEADVLYVT 223 (301)
T ss_pred CCCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEECCHHHHhCCCCEEEEC
Confidence 3788999999985 99999999999999999998864321 112223343 4578999999999998763
No 453
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=95.77 E-value=0.14 Score=46.65 Aligned_cols=113 Identities=12% Similarity=0.061 Sum_probs=74.6
Q ss_pred CCCeEEEEcC-ChhhHHHHHHHHHCCCcEE-EEcCCccchhHHHhCCCccCCCHHHHhhc--CCEEEEeeCChhHHHHHh
Q 018213 70 LPGRIGFLGM-GIMGTPMAQNLLKAGCDVT-VWNRTKSKCDPLISLGAKYQPSPDEVAAS--CDVTFAMLADPESAMDVA 145 (359)
Q Consensus 70 ~~~~igiiG~-G~iG~~ia~~l~~~g~~V~-~~d~~~~~~~~~~~~g~~~~~~~~~~~~~--aDivi~~~p~~~~~~~~~ 145 (359)
+..||.|.|. |..|+..-+.+..+|-+|. .+++... .++. .|+..+.++.|+... .|+.++++| ...+...+
T Consensus 11 ~~~~v~~~gi~~~~~~~~~~~~~~ygt~~~~gV~p~~~-~~~i--~G~~~y~sv~dlp~~~~~DlAvI~vP-a~~v~~al 86 (300)
T PLN00125 11 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKG-GTEH--LGLPVFNTVAEAKAETKANASVIYVP-PPFAAAAI 86 (300)
T ss_pred CCCeEEEecCCCHHHHHHHHHHHHhCCcEEEEECCCCC-CceE--cCeeccCCHHHHhhccCCCEEEEecC-HHHHHHHH
Confidence 4478999995 9999999999999998765 4554421 1111 378888999998865 799999998 66777776
Q ss_pred cccccccccCCCCCEEEeccCCChHH--HHHHHHHHHhcCCeeecCCC
Q 018213 146 CGKHGAASGMGPGKGYVDVSTVDGDT--SKLINGHIKATGASFLEAPV 191 (359)
Q Consensus 146 ~~~~~~~~~l~~~~~vi~~s~~~~~~--~~~l~~~l~~~~~~~~~~~~ 191 (359)
++..+.=-+..++ .+.+.+.. .+.+.+..++.++++++...
T Consensus 87 ---~e~~~~Gvk~~vI--isaGf~e~g~~~~~~~~ar~~girviGPNc 129 (300)
T PLN00125 87 ---LEAMEAELDLVVC--ITEGIPQHDMVRVKAALNRQSKTRLIGPNC 129 (300)
T ss_pred ---HHHHHcCCCEEEE--ECCCCCcccHHHHHHHHHhhcCCEEECCCC
Confidence 4444321122333 35554333 34444446677888877443
No 454
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.76 E-value=0.05 Score=51.11 Aligned_cols=36 Identities=22% Similarity=0.462 Sum_probs=32.2
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCc
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTK 104 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~ 104 (359)
++..+|.|||+|.+|+.+++.|+..|. +++++|.+.
T Consensus 26 L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 26 LFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred HhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 677899999999999999999999996 688888764
No 455
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=95.76 E-value=0.037 Score=54.11 Aligned_cols=36 Identities=31% Similarity=0.491 Sum_probs=32.8
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCc
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTK 104 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~ 104 (359)
.++++|.|||.|..|...|..|+..|++|+++++.+
T Consensus 139 ~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~ 174 (467)
T TIGR01318 139 PTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHP 174 (467)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 356899999999999999999999999999998765
No 456
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=95.76 E-value=0.042 Score=48.70 Aligned_cols=38 Identities=13% Similarity=0.203 Sum_probs=32.6
Q ss_pred CeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhH
Q 018213 72 GRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP 109 (359)
Q Consensus 72 ~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~ 109 (359)
|+|.|+|. |.+|..+++.|.+.|++|++.+|++++.+.
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~ 39 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQE 39 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence 56889985 999999999999999999999998765443
No 457
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=95.75 E-value=0.048 Score=47.60 Aligned_cols=86 Identities=14% Similarity=0.077 Sum_probs=60.4
Q ss_pred CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcc
Q 018213 69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG 147 (359)
Q Consensus 69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~ 147 (359)
.++|.+.|-|+ ..||.++|+.|.+.|++|++..|+.+++++++.+ +.+ ..+..+.+-+.+...++.++
T Consensus 4 ~~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~-------~~~--~~~~~~~~DVtD~~~~~~~i-- 72 (246)
T COG4221 4 LKGKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADE-------IGA--GAALALALDVTDRAAVEAAI-- 72 (246)
T ss_pred CCCcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHh-------hcc--CceEEEeeccCCHHHHHHHH--
Confidence 44566777787 6799999999999999999999999888877643 111 23445555555566777777
Q ss_pred cccccccCCCCCEEEeccC
Q 018213 148 KHGAASGMGPGKGYVDVST 166 (359)
Q Consensus 148 ~~~~~~~l~~~~~vi~~s~ 166 (359)
+.+.+...+=.++||-+.
T Consensus 73 -~~~~~~~g~iDiLvNNAG 90 (246)
T COG4221 73 -EALPEEFGRIDILVNNAG 90 (246)
T ss_pred -HHHHHhhCcccEEEecCC
Confidence 555555555567777643
No 458
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=95.74 E-value=0.049 Score=50.62 Aligned_cols=89 Identities=20% Similarity=0.209 Sum_probs=60.2
Q ss_pred CCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHH-HHhhcCCEEEEeeCChhHHHHHhccc
Q 018213 70 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPD-EVAASCDVTFAMLADPESAMDVACGK 148 (359)
Q Consensus 70 ~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~-~~~~~aDivi~~~p~~~~~~~~~~~~ 148 (359)
.+.+|.|.|.|.+|...++.++..|.+|++.++++++.+.+.+.|+...-+.. +.-+..|+++.+...+. .+
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~~~----~~--- 237 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPAGG----LV--- 237 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEECCCcHH----HH---
Confidence 46789999999999999999999999999999988887777777764332211 11123577776664332 22
Q ss_pred ccccccCCCCCEEEecc
Q 018213 149 HGAASGMGPGKGYVDVS 165 (359)
Q Consensus 149 ~~~~~~l~~~~~vi~~s 165 (359)
...++.++++..++..+
T Consensus 238 ~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 238 PPALEALDRGGVLAVAG 254 (329)
T ss_pred HHHHHhhCCCcEEEEEe
Confidence 23345666776666554
No 459
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=95.74 E-value=0.047 Score=50.26 Aligned_cols=88 Identities=15% Similarity=0.152 Sum_probs=53.0
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCCc-EEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCChhHHHHHhcc
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGCD-VTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADPESAMDVACG 147 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~-V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~~~~~~~~~~ 147 (359)
..+.++.|+|+|.+|...++.++..|.+ |.+.++++++.+...+.. ..+..++.-...|+|+-++..+......+
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~--~i~~~~~~~~g~Dvvid~~G~~~~~~~~~-- 218 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE--VLDPEKDPRRDYRAIYDASGDPSLIDTLV-- 218 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc--ccChhhccCCCCCEEEECCCCHHHHHHHH--
Confidence 3467899999999999999999999987 556677665544332221 11111111124678887775333233333
Q ss_pred cccccccCCCCCEEEecc
Q 018213 148 KHGAASGMGPGKGYVDVS 165 (359)
Q Consensus 148 ~~~~~~~l~~~~~vi~~s 165 (359)
+.++++..++.++
T Consensus 219 -----~~l~~~G~iv~~G 231 (308)
T TIGR01202 219 -----RRLAKGGEIVLAG 231 (308)
T ss_pred -----HhhhcCcEEEEEe
Confidence 4566666666554
No 460
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.73 E-value=0.067 Score=52.35 Aligned_cols=115 Identities=17% Similarity=0.132 Sum_probs=65.8
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCcc-chh---HHHhCCCcc-CCCHHHHhhcCCEEEEee--CCh-hH
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKS-KCD---PLISLGAKY-QPSPDEVAASCDVTFAML--ADP-ES 140 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~-~~~---~~~~~g~~~-~~~~~~~~~~aDivi~~~--p~~-~~ 140 (359)
.++++|+|+|+|.-|.+.++.|.+.|.+|+++|.+.. ... .+.+.+... .....+.+.++|+||..- |.+ +.
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~vV~SpgI~~~~p~ 85 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVETEASAQRLAAFDVVVKSPGISPYRPE 85 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeCCCChHHccCCCEEEECCCCCCCCHH
Confidence 3467899999999999999999999999999995432 211 233222111 112234567899998754 322 22
Q ss_pred HHHHhc------ccccc-ccc-CC-----CCCEEEeccCCChHHHHHHHHHHHhcC
Q 018213 141 AMDVAC------GKHGA-ASG-MG-----PGKGYVDVSTVDGDTSKLINGHIKATG 183 (359)
Q Consensus 141 ~~~~~~------~~~~~-~~~-l~-----~~~~vi~~s~~~~~~~~~l~~~l~~~~ 183 (359)
...... +.-++ +.. +. ...+-|.-|.|+..+..-+...|+..+
T Consensus 86 ~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g 141 (468)
T PRK04690 86 ALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRAAG 141 (468)
T ss_pred HHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHhcC
Confidence 222210 11122 112 21 123334445566666666777776654
No 461
>PRK06398 aldose dehydrogenase; Validated
Probab=95.73 E-value=0.044 Score=48.95 Aligned_cols=37 Identities=14% Similarity=0.113 Sum_probs=32.9
Q ss_pred CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCcc
Q 018213 69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKS 105 (359)
Q Consensus 69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~ 105 (359)
++++++.|.|. |.||.++++.|.+.|++|++.+|+..
T Consensus 4 l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~ 41 (258)
T PRK06398 4 LKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEP 41 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCcc
Confidence 66788999986 89999999999999999999998754
No 462
>PRK06194 hypothetical protein; Provisional
Probab=95.72 E-value=0.034 Score=50.36 Aligned_cols=41 Identities=12% Similarity=0.007 Sum_probs=34.5
Q ss_pred CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhH
Q 018213 69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP 109 (359)
Q Consensus 69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~ 109 (359)
++++++.|.|. |.||+.+++.|.+.|++|++.+|+.+..+.
T Consensus 4 ~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~ 45 (287)
T PRK06194 4 FAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDR 45 (287)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHH
Confidence 56688989885 899999999999999999999997654443
No 463
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=95.72 E-value=0.038 Score=49.03 Aligned_cols=41 Identities=17% Similarity=0.115 Sum_probs=34.9
Q ss_pred CCCCeEEEEc-CChhhHHHHHHHHHCCCcEEEEcCCccchhH
Q 018213 69 ELPGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDP 109 (359)
Q Consensus 69 ~~~~~igiiG-~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~ 109 (359)
+++++|.|.| .|.+|+.+++.|.+.|++|++.+|+++..+.
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~ 43 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAA 43 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHH
Confidence 4457899998 5999999999999999999999998765443
No 464
>PRK06057 short chain dehydrogenase; Provisional
Probab=95.71 E-value=0.062 Score=47.78 Aligned_cols=40 Identities=18% Similarity=0.065 Sum_probs=35.0
Q ss_pred CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchh
Q 018213 69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD 108 (359)
Q Consensus 69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~ 108 (359)
+.+++|.|+|. |.||..+++.|.+.|++|++.+|++...+
T Consensus 5 ~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~ 45 (255)
T PRK06057 5 LAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGK 45 (255)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 66788999997 99999999999999999999999865443
No 465
>KOG3007 consensus Mu-crystallin [Amino acid transport and metabolism]
Probab=95.71 E-value=0.035 Score=48.81 Aligned_cols=109 Identities=13% Similarity=0.129 Sum_probs=76.1
Q ss_pred CeEEEEcCChhhHHHHHHHHHCC---CcEEEEcCCccchhHHHhC----------CCccCCCHHHHhhcCCEEEEeeCCh
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKAG---CDVTVWNRTKSKCDPLISL----------GAKYQPSPDEVAASCDVTFAMLADP 138 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~g---~~V~~~d~~~~~~~~~~~~----------g~~~~~~~~~~~~~aDivi~~~p~~ 138 (359)
..+.|+|.|..+-.......+.- .+|.+|+|+++..+.+++. .+..++++++++..+|||+.|++.
T Consensus 139 ~vL~i~GsG~qA~~hi~ih~~~~pslreVrIwnht~e~A~~la~~lsk~~~~iqie~~~~qsl~~aV~~sDIIs~atls- 217 (333)
T KOG3007|consen 139 CVLTIFGSGLQAFWHIYIHIKLIPSLREVRIWNHTNEMALDLAKSLSKLFSNIQIELNQYQSLNGAVSNSDIISGATLS- 217 (333)
T ss_pred eEEEEEcccchhHHHHHHHHHhcccceEEEeecCChHHHHHHHHHhhhcccceEEEEEehhhhhcccccCceEEecccc-
Confidence 45789999999998888765433 3799999998877766651 234577899999999999999863
Q ss_pred hHHHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeecC
Q 018213 139 ESAMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLEA 189 (359)
Q Consensus 139 ~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~~ 189 (359)
++.+++ ..+++||+.+=-++.-.|+.- +..+.+-+.+..|+|.
T Consensus 218 --tePilf-----gewlkpgthIdlVGsf~p~mh-EcDdelIq~a~vfVDs 260 (333)
T KOG3007|consen 218 --TEPILF-----GEWLKPGTHIDLVGSFKPVMH-ECDDELIQSACVFVDS 260 (333)
T ss_pred --CCceee-----eeeecCCceEeeeccCCchHH-HHhHHHhhhheEEEec
Confidence 445552 457899987766666666543 3333333445567764
No 466
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=95.71 E-value=0.031 Score=49.29 Aligned_cols=39 Identities=18% Similarity=0.104 Sum_probs=34.1
Q ss_pred CCCCeEEEEc-CChhhHHHHHHHHHCCCcEEEEcCCccch
Q 018213 69 ELPGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKC 107 (359)
Q Consensus 69 ~~~~~igiiG-~G~iG~~ia~~l~~~g~~V~~~d~~~~~~ 107 (359)
+.+++|.|.| .|.+|..+++.|.+.|++|++.+|++++.
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~ 43 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDA 43 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 5668899998 59999999999999999999999986543
No 467
>PRK05872 short chain dehydrogenase; Provisional
Probab=95.69 E-value=0.062 Score=49.09 Aligned_cols=42 Identities=14% Similarity=0.182 Sum_probs=36.1
Q ss_pred CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHH
Q 018213 69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (359)
Q Consensus 69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~ 110 (359)
++++++.|.|. |.||..+++.|.+.|++|++.+|++++.+.+
T Consensus 7 l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~ 49 (296)
T PRK05872 7 LAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAAL 49 (296)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 66788999986 8999999999999999999999987655544
No 468
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=95.69 E-value=0.017 Score=53.27 Aligned_cols=64 Identities=25% Similarity=0.368 Sum_probs=45.4
Q ss_pred CeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCcc-------CCCHHHHhhcCCEEEEee
Q 018213 72 GRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKY-------QPSPDEVAASCDVTFAML 135 (359)
Q Consensus 72 ~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~-------~~~~~~~~~~aDivi~~~ 135 (359)
|+|.|.|. |.+|+.+++.|.+.|++|++.+|+++....+...++.. ..++.++++.+|+|+.+.
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a 72 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVA 72 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEec
Confidence 46889985 99999999999999999999999876543322222221 123445666788887765
No 469
>PRK06813 homoserine dehydrogenase; Validated
Probab=95.67 E-value=0.06 Score=50.18 Aligned_cols=121 Identities=17% Similarity=0.166 Sum_probs=62.9
Q ss_pred CeEEEEcCChhhHHHHHHHHHC--------CCcEE---EEcCCccchh-------HHHhCC--Cc-----cCCCHHHHh-
Q 018213 72 GRIGFLGMGIMGTPMAQNLLKA--------GCDVT---VWNRTKSKCD-------PLISLG--AK-----YQPSPDEVA- 125 (359)
Q Consensus 72 ~~igiiG~G~iG~~ia~~l~~~--------g~~V~---~~d~~~~~~~-------~~~~~g--~~-----~~~~~~~~~- 125 (359)
.+|+|+|+|.+|+.+++.|.+. |.++. +.+++..... .+.+.+ .. .....++.+
T Consensus 3 i~I~liG~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~~~~~~~~~gi~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 82 (346)
T PRK06813 3 IKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNVAIHNEDGLSIHHLLRYGGGSCAIEKYIEHHPEERAT 82 (346)
T ss_pred eEEEEEecChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEecchhhccccCCChhhhhhccccccchhhhhccChHHHhc
Confidence 6799999999999999998643 44433 3355432211 111100 00 111222222
Q ss_pred h--cCCEEEEeeCChhHHHHHhcccccccccCCCCCEEEeccCCC-hHHHHHHHHHHHhcCCeeec-CCCCCC
Q 018213 126 A--SCDVTFAMLADPESAMDVACGKHGAASGMGPGKGYVDVSTVD-GDTSKLINGHIKATGASFLE-APVSGS 194 (359)
Q Consensus 126 ~--~aDivi~~~p~~~~~~~~~~~~~~~~~~l~~~~~vi~~s~~~-~~~~~~l~~~l~~~~~~~~~-~~~~~~ 194 (359)
. +.|||+-|+|......+.- ..-+..+++.|..||...-.. ....+++.+..++++..+.. +.+.++
T Consensus 83 ~~~~~dVvVe~T~s~~~~~e~a--~~~~~~aL~~G~hVVTANK~~la~~~~eL~~lA~~~g~~~~yEasVggG 153 (346)
T PRK06813 83 DNISGTVLVESTVTNLKDGNPG--KQYIKQAIEKKMDIVAISKGALVTNWREINEAAKIANVRIRYSGATAAA 153 (346)
T ss_pred CCCCCCEEEECCCCccCCchHH--HHHHHHHHHCCCeEEcCCcHHHhccHHHHHHHHHHcCCeEEEeeeeeec
Confidence 2 4799999987431111111 011245677888888553322 12335666666677776653 444433
No 470
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=95.67 E-value=0.028 Score=52.67 Aligned_cols=87 Identities=15% Similarity=0.267 Sum_probs=52.6
Q ss_pred CeEEEEcC-ChhhHHHHH-HHHHCCCc---EEEEcCCc--cchhHHHhCCCccC--CCHHHHhhcCCEEEEeeCChhHHH
Q 018213 72 GRIGFLGM-GIMGTPMAQ-NLLKAGCD---VTVWNRTK--SKCDPLISLGAKYQ--PSPDEVAASCDVTFAMLADPESAM 142 (359)
Q Consensus 72 ~~igiiG~-G~iG~~ia~-~l~~~g~~---V~~~d~~~--~~~~~~~~~g~~~~--~~~~~~~~~aDivi~~~p~~~~~~ 142 (359)
++|+|||+ |.+|+.+.+ .|....++ +..++... .+...+........ .+.+ .+.++|++++|+| ....+
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f~g~~~~v~~~~~~~-~~~~~Divf~a~~-~~~s~ 79 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGGKEGTLQDAFDID-ALKKLDIIITCQG-GDYTN 79 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcccccCCCcceEEecCChh-HhcCCCEEEECCC-HHHHH
Confidence 67999997 999999998 56666665 66554421 11111211111122 2233 3578999999997 44555
Q ss_pred HHhcccccccccCCCC--CEEEeccC
Q 018213 143 DVACGKHGAASGMGPG--KGYVDVST 166 (359)
Q Consensus 143 ~~~~~~~~~~~~l~~~--~~vi~~s~ 166 (359)
.+. ..+ .+.| .++||.|.
T Consensus 80 ~~~---~~~---~~aG~~~~VID~Ss 99 (369)
T PRK06598 80 EVY---PKL---RAAGWQGYWIDAAS 99 (369)
T ss_pred HHH---HHH---HhCCCCeEEEECCh
Confidence 555 333 2456 67999874
No 471
>PRK05854 short chain dehydrogenase; Provisional
Probab=95.67 E-value=0.07 Score=49.22 Aligned_cols=41 Identities=24% Similarity=0.262 Sum_probs=35.2
Q ss_pred CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhH
Q 018213 69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP 109 (359)
Q Consensus 69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~ 109 (359)
++++++.|.|. |.||.++|+.|++.|++|++.+|+.++.+.
T Consensus 12 l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~ 53 (313)
T PRK05854 12 LSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEA 53 (313)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 67788888885 889999999999999999999998765443
No 472
>PRK07814 short chain dehydrogenase; Provisional
Probab=95.66 E-value=0.04 Score=49.29 Aligned_cols=41 Identities=27% Similarity=0.247 Sum_probs=34.8
Q ss_pred CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhH
Q 018213 69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP 109 (359)
Q Consensus 69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~ 109 (359)
++++++.|.|. |.||..+++.|.+.|++|++.+|+++..+.
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~ 49 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDE 49 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 56688999986 689999999999999999999998765443
No 473
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=95.66 E-value=0.04 Score=50.51 Aligned_cols=66 Identities=15% Similarity=0.136 Sum_probs=51.2
Q ss_pred cCCCCeEEEEcC---ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEee
Q 018213 68 DELPGRIGFLGM---GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAML 135 (359)
Q Consensus 68 ~~~~~~igiiG~---G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~ 135 (359)
.+++.||++||- +++..+++..++.+|++|.++.+..-....+. ....+++++++++++|+|....
T Consensus 153 ~l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~--~~~~~~d~~ea~~~aDvvyt~~ 221 (305)
T PRK00856 153 RLEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPEGMP--EYGVHTDLDEVIEDADVVMMLR 221 (305)
T ss_pred CCCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCccccc--ceEEECCHHHHhCCCCEEEECC
Confidence 378899999987 58999999999999999999886432211111 2356789999999999987743
No 474
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=95.65 E-value=0.044 Score=50.52 Aligned_cols=66 Identities=20% Similarity=0.211 Sum_probs=45.6
Q ss_pred CCCeEEEEc-CChhhHHHHHHHHHCCCcEEEEcCCccchhHH---HhC-----CC-------ccCCCHHHHhhcCCEEEE
Q 018213 70 LPGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL---ISL-----GA-------KYQPSPDEVAASCDVTFA 133 (359)
Q Consensus 70 ~~~~igiiG-~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~---~~~-----g~-------~~~~~~~~~~~~aDivi~ 133 (359)
++++|.|.| +|-||+.+++.|.+.|++|.+.+|+....... ... .+ .-..+.+++++++|+||.
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 82 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFH 82 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEE
Confidence 357899998 59999999999999999999888876532211 100 11 111245566777888877
Q ss_pred ee
Q 018213 134 ML 135 (359)
Q Consensus 134 ~~ 135 (359)
+.
T Consensus 83 ~A 84 (322)
T PLN02662 83 TA 84 (322)
T ss_pred eC
Confidence 65
No 475
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=95.61 E-value=0.054 Score=52.05 Aligned_cols=89 Identities=16% Similarity=0.159 Sum_probs=61.0
Q ss_pred CCCCeEEEEcC----------ChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCCCccCCCHHHHhhcCCEEEEeeCCh
Q 018213 69 ELPGRIGFLGM----------GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLGAKYQPSPDEVAASCDVTFAMLADP 138 (359)
Q Consensus 69 ~~~~~igiiG~----------G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~~p~~ 138 (359)
+.+++|+|+|+ ..-...+++.|...|.+|.+||+...... .. ......++++.++++|+|+++++.
T Consensus 311 ~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~-~~--~~~~~~~~~~~~~~ad~~v~~t~~- 386 (411)
T TIGR03026 311 LKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEE-VK--GLPLIDDLEEALKGADALVILTDH- 386 (411)
T ss_pred ccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhh-hh--hcccCCCHHHHHhCCCEEEEecCC-
Confidence 67799999997 34678899999999999999998643321 11 122356888999999999999964
Q ss_pred hHHHHHhcccccccccCCCCCEEEec
Q 018213 139 ESAMDVACGKHGAASGMGPGKGYVDV 164 (359)
Q Consensus 139 ~~~~~~~~~~~~~~~~l~~~~~vi~~ 164 (359)
++.+.+-+ +.+...|+ ..+++|.
T Consensus 387 ~~~~~~~~--~~~~~~~~-~~~v~D~ 409 (411)
T TIGR03026 387 DEFKDLDL--EKIKDLMK-GKVVVDT 409 (411)
T ss_pred HHHhccCH--HHHHHhcC-CCEEEeC
Confidence 44443310 23333343 4477774
No 476
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=95.61 E-value=0.035 Score=51.29 Aligned_cols=29 Identities=28% Similarity=0.568 Sum_probs=23.9
Q ss_pred eEEEEcCChhhHHHHHHHHHCC----CcEEEEc
Q 018213 73 RIGFLGMGIMGTPMAQNLLKAG----CDVTVWN 101 (359)
Q Consensus 73 ~igiiG~G~iG~~ia~~l~~~g----~~V~~~d 101 (359)
+|||+|+|+||+.+.+.+...+ ++|...+
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaIn 33 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALN 33 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEe
Confidence 5999999999999999988753 6776554
No 477
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.60 E-value=0.046 Score=48.25 Aligned_cols=40 Identities=20% Similarity=0.221 Sum_probs=34.8
Q ss_pred CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchh
Q 018213 69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD 108 (359)
Q Consensus 69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~ 108 (359)
++++++.|+|. |.||..+++.|.+.|++|++.+|++++.+
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~ 43 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLE 43 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 55688999997 99999999999999999999999875543
No 478
>PRK12829 short chain dehydrogenase; Provisional
Probab=95.60 E-value=0.044 Score=48.84 Aligned_cols=42 Identities=19% Similarity=0.172 Sum_probs=35.9
Q ss_pred CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHH
Q 018213 69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (359)
Q Consensus 69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~ 110 (359)
++++++.|+|. |.+|..+++.|.+.|++|++.+|+++..+.+
T Consensus 9 ~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~ 51 (264)
T PRK12829 9 LDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAAT 51 (264)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 66789999986 9999999999999999999999986554433
No 479
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=95.60 E-value=0.032 Score=52.41 Aligned_cols=39 Identities=26% Similarity=0.349 Sum_probs=34.3
Q ss_pred CCCCeEEEEc-CChhhHHHHHHHHHCCCcEEEEcCCccch
Q 018213 69 ELPGRIGFLG-MGIMGTPMAQNLLKAGCDVTVWNRTKSKC 107 (359)
Q Consensus 69 ~~~~~igiiG-~G~iG~~ia~~l~~~g~~V~~~d~~~~~~ 107 (359)
..+|+|.|.| +|-||+.+++.|.+.|++|++.+|++...
T Consensus 8 ~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~ 47 (353)
T PLN02896 8 SATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKS 47 (353)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHH
Confidence 7779999998 59999999999999999999988876543
No 480
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=95.59 E-value=0.054 Score=48.39 Aligned_cols=42 Identities=14% Similarity=0.211 Sum_probs=35.1
Q ss_pred CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHH
Q 018213 69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (359)
Q Consensus 69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~ 110 (359)
++++++.|.|. |.||..+++.|.+.|++|++.+|+.+..+.+
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l 45 (262)
T TIGR03325 3 LKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQEL 45 (262)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 45678888886 8899999999999999999999987654444
No 481
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=95.59 E-value=0.045 Score=48.73 Aligned_cols=40 Identities=20% Similarity=0.137 Sum_probs=34.5
Q ss_pred CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchh
Q 018213 69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD 108 (359)
Q Consensus 69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~ 108 (359)
++++++.|.|. |.||..+++.|.+.|++|++.+|+.++.+
T Consensus 10 ~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~ 50 (259)
T PRK08213 10 LSGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELE 50 (259)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 56688999985 99999999999999999999999865443
No 482
>PRK07062 short chain dehydrogenase; Provisional
Probab=95.57 E-value=0.083 Score=47.21 Aligned_cols=41 Identities=20% Similarity=0.188 Sum_probs=35.3
Q ss_pred CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhH
Q 018213 69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP 109 (359)
Q Consensus 69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~ 109 (359)
++++++.|.|. |.||.++++.|.+.|++|++.+|++++.+.
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~ 47 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLAS 47 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHH
Confidence 66788999987 789999999999999999999998765443
No 483
>PRK05717 oxidoreductase; Validated
Probab=95.56 E-value=0.063 Score=47.70 Aligned_cols=40 Identities=15% Similarity=0.108 Sum_probs=34.2
Q ss_pred CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchh
Q 018213 69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD 108 (359)
Q Consensus 69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~ 108 (359)
++++++.|.|. |.||+.+++.|.+.|++|++.++++++.+
T Consensus 8 ~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~ 48 (255)
T PRK05717 8 HNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERGS 48 (255)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHHH
Confidence 66788999985 99999999999999999999998765433
No 484
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.53 E-value=0.062 Score=48.53 Aligned_cols=54 Identities=20% Similarity=0.271 Sum_probs=45.3
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCC-cEEEEcCCccchhHHHhCCCccCCCHH
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRTKSKCDPLISLGAKYQPSPD 122 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~~~~~ 122 (359)
..+.+++|+|+|.+|.++++..+.+|. ++++.|.++++.+..++.|+.-+-++.
T Consensus 191 ~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~ 245 (375)
T KOG0022|consen 191 EPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFINPK 245 (375)
T ss_pred CCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecChh
Confidence 356899999999999999999999995 799999999988887777776544444
No 485
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=95.53 E-value=0.07 Score=49.99 Aligned_cols=45 Identities=20% Similarity=0.228 Sum_probs=38.0
Q ss_pred CCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchhHHHhCC
Q 018213 70 LPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCDPLISLG 114 (359)
Q Consensus 70 ~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g 114 (359)
.+.+|.|+|.|.+|...++.++..|.+|++.++++++.+.+.+.|
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~G 210 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFG 210 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhC
Confidence 467899999999999999999999999999998887766554444
No 486
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=95.52 E-value=0.054 Score=48.06 Aligned_cols=41 Identities=17% Similarity=0.182 Sum_probs=34.8
Q ss_pred CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhH
Q 018213 69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP 109 (359)
Q Consensus 69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~ 109 (359)
+.++++.|.|. |.||.++++.|.+.|++|++.+|++++.+.
T Consensus 7 l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~ 48 (254)
T PRK08085 7 LAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAEL 48 (254)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHH
Confidence 56788989985 899999999999999999999998655443
No 487
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=95.51 E-value=0.053 Score=54.32 Aligned_cols=67 Identities=21% Similarity=0.224 Sum_probs=47.6
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccchh-HHHhCCCc-cCCC---HHHHhhcCCEEEEee
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSKCD-PLISLGAK-YQPS---PDEVAASCDVTFAML 135 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~~~-~~~~~g~~-~~~~---~~~~~~~aDivi~~~ 135 (359)
+..++|||||.|..|+.++..+.+.|++|.++|.+++... .+.+.-+. ...+ +.++++++|+|....
T Consensus 20 ~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~e~ 91 (577)
T PLN02948 20 VSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLTVEI 91 (577)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEEEec
Confidence 6678999999999999999999999999999998765322 11111111 1234 345567899987654
No 488
>PRK09186 flagellin modification protein A; Provisional
Probab=95.51 E-value=0.062 Score=47.66 Aligned_cols=42 Identities=24% Similarity=0.313 Sum_probs=35.4
Q ss_pred CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHH
Q 018213 69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (359)
Q Consensus 69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~ 110 (359)
++++++.|.|. |.||..+|+.|.+.|++|++.+|++++.+..
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~ 44 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNEL 44 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHH
Confidence 45688999986 8999999999999999999999987655433
No 489
>PLN02214 cinnamoyl-CoA reductase
Probab=95.50 E-value=0.046 Score=51.13 Aligned_cols=68 Identities=16% Similarity=0.123 Sum_probs=47.1
Q ss_pred CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchh-----HHHhC--CCc-------cCCCHHHHhhcCCEEEE
Q 018213 69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD-----PLISL--GAK-------YQPSPDEVAASCDVTFA 133 (359)
Q Consensus 69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~-----~~~~~--g~~-------~~~~~~~~~~~aDivi~ 133 (359)
+++++|.|.|. |.+|+.+++.|.+.|++|.+.+|+.+... .+... .+. -..+++++++.+|+||.
T Consensus 8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih 87 (342)
T PLN02214 8 PAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVFH 87 (342)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEEE
Confidence 56688999997 99999999999999999999988765321 11110 111 11234566778898887
Q ss_pred eeC
Q 018213 134 MLA 136 (359)
Q Consensus 134 ~~p 136 (359)
+..
T Consensus 88 ~A~ 90 (342)
T PLN02214 88 TAS 90 (342)
T ss_pred ecC
Confidence 763
No 490
>PLN02780 ketoreductase/ oxidoreductase
Probab=95.50 E-value=0.037 Score=51.30 Aligned_cols=41 Identities=17% Similarity=0.179 Sum_probs=34.7
Q ss_pred CCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHH
Q 018213 70 LPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (359)
Q Consensus 70 ~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~ 110 (359)
.++++.|.|+ |.||.++|+.|++.|++|++.+|++++.+..
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~ 93 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDV 93 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHH
Confidence 3567888886 8899999999999999999999998765544
No 491
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=95.47 E-value=0.051 Score=48.45 Aligned_cols=38 Identities=21% Similarity=0.265 Sum_probs=32.3
Q ss_pred CeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhH
Q 018213 72 GRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP 109 (359)
Q Consensus 72 ~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~ 109 (359)
|++.|.|. |.||.++++.|.+.|++|++.+|+++..+.
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~ 39 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEK 39 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 46888886 889999999999999999999998765443
No 492
>PRK09242 tropinone reductase; Provisional
Probab=95.46 E-value=0.082 Score=47.00 Aligned_cols=41 Identities=20% Similarity=0.171 Sum_probs=34.9
Q ss_pred CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhH
Q 018213 69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDP 109 (359)
Q Consensus 69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~ 109 (359)
++++++.|.|. |.||..+++.|.+.|++|++.+|+.+..+.
T Consensus 7 ~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~ 48 (257)
T PRK09242 7 LDGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQ 48 (257)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 56688999986 899999999999999999999998655443
No 493
>PRK07060 short chain dehydrogenase; Provisional
Probab=95.46 E-value=0.037 Score=48.67 Aligned_cols=42 Identities=21% Similarity=0.170 Sum_probs=36.0
Q ss_pred CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchhHH
Q 018213 69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCDPL 110 (359)
Q Consensus 69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~~~ 110 (359)
++++++.|.|. |.+|..+++.|.+.|++|++.+|++++.+.+
T Consensus 7 ~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~ 49 (245)
T PRK07060 7 FSGKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRL 49 (245)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 56688999997 8999999999999999999999987654443
No 494
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=95.45 E-value=0.092 Score=46.78 Aligned_cols=110 Identities=15% Similarity=0.128 Sum_probs=70.7
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCCc-EEEEcCCccchhHHHh----CCCccCCCHHHHhh---cCCEEEEeeCChhH
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGCD-VTVWNRTKSKCDPLIS----LGAKYQPSPDEVAA---SCDVTFAMLADPES 140 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~-V~~~d~~~~~~~~~~~----~g~~~~~~~~~~~~---~aDivi~~~p~~~~ 140 (359)
..+++|.-||+|. |. ++..+++.|.. |+++|.++..++...+ .++. +.-++.. ..|+|+... ....
T Consensus 118 ~~~~~VLDiGcGs-G~-l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~---~~~~~~~~~~~fD~Vvani-~~~~ 191 (250)
T PRK00517 118 LPGKTVLDVGCGS-GI-LAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVE---LNVYLPQGDLKADVIVANI-LANP 191 (250)
T ss_pred CCCCEEEEeCCcH-HH-HHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCC---ceEEEccCCCCcCEEEEcC-cHHH
Confidence 3568999999998 64 45556677765 9999999876654433 2331 0001111 479888766 3455
Q ss_pred HHHHhcccccccccCCCCCEEEeccCCChHHHHHHHHHHHhcCCeeec
Q 018213 141 AMDVACGKHGAASGMGPGKGYVDVSTVDGDTSKLINGHIKATGASFLE 188 (359)
Q Consensus 141 ~~~~~~~~~~~~~~l~~~~~vi~~s~~~~~~~~~l~~~l~~~~~~~~~ 188 (359)
...++ +++...+++|..++-. .......+.+.+.+...|...+.
T Consensus 192 ~~~l~---~~~~~~LkpgG~lils-gi~~~~~~~v~~~l~~~Gf~~~~ 235 (250)
T PRK00517 192 LLELA---PDLARLLKPGGRLILS-GILEEQADEVLEAYEEAGFTLDE 235 (250)
T ss_pred HHHHH---HHHHHhcCCCcEEEEE-ECcHhhHHHHHHHHHHCCCEEEE
Confidence 66666 7777889998877743 22344556777788777776654
No 495
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=95.45 E-value=0.063 Score=54.81 Aligned_cols=68 Identities=24% Similarity=0.466 Sum_probs=49.4
Q ss_pred CCCCeEEEEcCChhhHHHHHHHHHCCCcEEEEcCCccc---------------------hhHHHhCCCccC--------C
Q 018213 69 ELPGRIGFLGMGIMGTPMAQNLLKAGCDVTVWNRTKSK---------------------CDPLISLGAKYQ--------P 119 (359)
Q Consensus 69 ~~~~~igiiG~G~iG~~ia~~l~~~g~~V~~~d~~~~~---------------------~~~~~~~g~~~~--------~ 119 (359)
..+++|.|||.|..|...|..|+..|++|+++++++.. .+.+.+.|+... .
T Consensus 191 ~~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~~dv 270 (652)
T PRK12814 191 KSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGRDI 270 (652)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCcccCcc
Confidence 45689999999999999999999999999999976431 122333454321 1
Q ss_pred CHHHHhhcCCEEEEeeC
Q 018213 120 SPDEVAASCDVTFAMLA 136 (359)
Q Consensus 120 ~~~~~~~~aDivi~~~p 136 (359)
+.+++....|.|++++-
T Consensus 271 ~~~~~~~~~DaVilAtG 287 (652)
T PRK12814 271 TLEELQKEFDAVLLAVG 287 (652)
T ss_pred CHHHHHhhcCEEEEEcC
Confidence 34455456899999884
No 496
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=95.44 E-value=0.19 Score=44.98 Aligned_cols=89 Identities=19% Similarity=0.131 Sum_probs=54.6
Q ss_pred eEEEEcC-ChhhHHHHHHHHHCCCcEEEE--cCCcc--chhHHHhCCCcc------CCCHHHHhhc-CC-EEEEeeCChh
Q 018213 73 RIGFLGM-GIMGTPMAQNLLKAGCDVTVW--NRTKS--KCDPLISLGAKY------QPSPDEVAAS-CD-VTFAMLADPE 139 (359)
Q Consensus 73 ~igiiG~-G~iG~~ia~~l~~~g~~V~~~--d~~~~--~~~~~~~~g~~~------~~~~~~~~~~-aD-ivi~~~p~~~ 139 (359)
+|.|.|+ |+||+.+++.....++++... ++... ....+...++.. ..++++++.. +| ++|=.. .|.
T Consensus 2 ~V~V~Ga~GkMG~~v~~av~~~~~~Lv~~~~~~~~~~~~~~~~~g~~v~v~~~~~~~~~l~~~~~~~~d~VvIDFT-~P~ 80 (275)
T TIGR02130 2 QIMVNGCPGKMGKAVAEAADAAGLEIVPTSFGGEEEAENEAEVAGKEILLHGPSEREARIGEVFAKYPELICIDYT-HPS 80 (275)
T ss_pred eEEEeCCCChHHHHHHHHHhcCCCEEEeeEccccccccchhhhcccceeeeccccccccHHHHHhhcCCEEEEECC-ChH
Confidence 5889997 999999999988888988764 43221 111222223444 6688888876 89 555444 566
Q ss_pred HHHHHhcccccccccCCCCCEEEeccCCC
Q 018213 140 SAMDVACGKHGAASGMGPGKGYVDVSTVD 168 (359)
Q Consensus 140 ~~~~~~~~~~~~~~~l~~~~~vi~~s~~~ 168 (359)
.+...+ + ...+.+..+|.-++|.
T Consensus 81 ~~~~n~---~---~~~~~gv~~ViGTTG~ 103 (275)
T TIGR02130 81 AVNDNA---A---FYGKHGIPFVMGTTGG 103 (275)
T ss_pred HHHHHH---H---HHHHCCCCEEEcCCCC
Confidence 666655 2 2234455444444443
No 497
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.44 E-value=0.068 Score=47.97 Aligned_cols=35 Identities=17% Similarity=0.213 Sum_probs=31.0
Q ss_pred CCCCeEEEEcCC---hhhHHHHHHHHHCCCcEEEEcCC
Q 018213 69 ELPGRIGFLGMG---IMGTPMAQNLLKAGCDVTVWNRT 103 (359)
Q Consensus 69 ~~~~~igiiG~G---~iG~~ia~~l~~~g~~V~~~d~~ 103 (359)
++++++.|.|.+ .||.++|+.|++.|++|++.+|+
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~ 41 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQN 41 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecc
Confidence 556889999986 69999999999999999988886
No 498
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=95.44 E-value=0.055 Score=49.11 Aligned_cols=31 Identities=26% Similarity=0.465 Sum_probs=27.1
Q ss_pred eEEEEcCChhhHHHHHHHHHCCC-cEEEEcCC
Q 018213 73 RIGFLGMGIMGTPMAQNLLKAGC-DVTVWNRT 103 (359)
Q Consensus 73 ~igiiG~G~iG~~ia~~l~~~g~-~V~~~d~~ 103 (359)
+|.|||+|.+|..+++.|+..|. +++++|.+
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D 32 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMD 32 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 48999999999999999999996 67777754
No 499
>PRK08628 short chain dehydrogenase; Provisional
Probab=95.43 E-value=0.068 Score=47.54 Aligned_cols=39 Identities=13% Similarity=0.140 Sum_probs=34.0
Q ss_pred CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccch
Q 018213 69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKC 107 (359)
Q Consensus 69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~ 107 (359)
++++++.|+|. |.||..+++.|.+.|++|++.+|+++..
T Consensus 5 l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~ 44 (258)
T PRK08628 5 LKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDD 44 (258)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhH
Confidence 66788999985 8999999999999999999999876543
No 500
>PRK06500 short chain dehydrogenase; Provisional
Probab=95.43 E-value=0.069 Score=47.11 Aligned_cols=40 Identities=18% Similarity=0.172 Sum_probs=34.0
Q ss_pred CCCCeEEEEcC-ChhhHHHHHHHHHCCCcEEEEcCCccchh
Q 018213 69 ELPGRIGFLGM-GIMGTPMAQNLLKAGCDVTVWNRTKSKCD 108 (359)
Q Consensus 69 ~~~~~igiiG~-G~iG~~ia~~l~~~g~~V~~~d~~~~~~~ 108 (359)
+.++++.|.|. |.||+.+++.|.+.|++|++.+|+.+..+
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~ 44 (249)
T PRK06500 4 LQGKTALITGGTSGIGLETARQFLAEGARVAITGRDPASLE 44 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHH
Confidence 55678999986 99999999999999999999998765433
Done!