BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018214
(359 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1B3B|A Chain A, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
pdb|1B3B|B Chain B, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
pdb|1B3B|C Chain C, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
pdb|1B3B|D Chain D, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
pdb|1B3B|E Chain E, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
pdb|1B3B|F Chain F, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
Length = 415
Score = 328 bits (840), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 175/401 (43%), Positives = 236/401 (58%), Gaps = 53/401 (13%)
Query: 10 NFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGI 69
F AA ++ L+S L L P R + VE + DDG + F G+R+QH+ ARGP KGGI
Sbjct: 12 QFNRAASLMDLESDLAEVLRRPKRVLIVEFPVRMDDGHVEVFTGYRVQHNVARGPAKGGI 71
Query: 70 RYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIH 129
RYHP+V DEV ALA MTWKTAV +P+GG KGG+ +P++LS +ELERL+R F +I
Sbjct: 72 RYHPDVTLDEVKALAFWMTWKTAVMDLPFGGGKGGVRVDPKKLSRNELERLSRRFFSEIQ 131
Query: 130 DLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSP-AVVTGKPIDLGGSLGREAATGLG 188
+IG + D+PAPD+ TN+ +AW +D YS GH+ +VTGKP++LGGS GRE ATG G
Sbjct: 132 VIIGPYNDIPAPDVNTNADVIAWYMDTYSMNVGHTVLGIVTGKPVELGGSKGREEATGRG 191
Query: 189 VFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFF-HEHGGKVVAVSDITGGVLNKE- 246
V + G A+QGFGNVG +AA E G KVVAVSD GG+ N E
Sbjct: 192 VKVCAGLAMDVLGIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEG 251
Query: 247 --------------------------------------------------NAADVKAKFI 256
NA +KAK +
Sbjct: 252 FDVEELIRYKKEHGTVVTYPKGERITNEELLELDVDILVPAALEGAIHAGNAERIKAKAV 311
Query: 257 IEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELK 316
+E AN PT PEADEILS++G++++PDI AN+GGVTVSYFEWVQ++Q F W+ ++V + L+
Sbjct: 312 VEGANGPTTPEADEILSRRGILVVPDILANAGGVTVSYFEWVQDLQSFFWDLDQVRNALE 371
Query: 317 RYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATLLRG 357
+ M AF D+ + + +N ++R A+ L ++RVA AT RG
Sbjct: 372 KMMKKAFNDVMKVKEKYNVDMRTAAYILAIDRVAYATKKRG 412
>pdb|1B26|A Chain A, Glutamate Dehydrogenase
pdb|1B26|B Chain B, Glutamate Dehydrogenase
pdb|1B26|C Chain C, Glutamate Dehydrogenase
pdb|1B26|D Chain D, Glutamate Dehydrogenase
pdb|1B26|E Chain E, Glutamate Dehydrogenase
pdb|1B26|F Chain F, Glutamate Dehydrogenase
Length = 416
Score = 328 bits (840), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 175/401 (43%), Positives = 236/401 (58%), Gaps = 53/401 (13%)
Query: 10 NFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGI 69
F AA ++ L+S L L P R + VE + DDG + F G+R+QH+ ARGP KGGI
Sbjct: 13 QFNRAASLMDLESDLAEVLRRPKRVLIVEFPVRMDDGHVEVFTGYRVQHNVARGPAKGGI 72
Query: 70 RYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIH 129
RYHP+V DEV ALA MTWKTAV +P+GG KGG+ +P++LS +ELERL+R F +I
Sbjct: 73 RYHPDVTLDEVKALAFWMTWKTAVMNLPFGGGKGGVRVDPKKLSRNELERLSRRFFSEIQ 132
Query: 130 DLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSP-AVVTGKPIDLGGSLGREAATGLG 188
+IG + D+PAPD+ TN+ +AW +D YS GH+ +VTGKP++LGGS GRE ATG G
Sbjct: 133 VIIGPYNDIPAPDVNTNADVIAWYMDTYSMNVGHTVLGIVTGKPVELGGSKGREEATGRG 192
Query: 189 VFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFF-HEHGGKVVAVSDITGGVLNKE- 246
V + G A+QGFGNVG +AA E G KVVAVSD GG+ N E
Sbjct: 193 VKVCAGLAMDVLGIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEG 252
Query: 247 --------------------------------------------------NAADVKAKFI 256
NA +KAK +
Sbjct: 253 FDVEELIRYKKEHGTVVTYPKGERITNEELLELDVDILVPAALEGAIHAGNAERIKAKAV 312
Query: 257 IEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELK 316
+E AN PT PEADEILS++G++++PDI AN+GGVTVSYFEWVQ++Q F W+ ++V + L+
Sbjct: 313 VEGANGPTTPEADEILSRRGILVVPDILANAGGVTVSYFEWVQDLQSFFWDLDQVRNALE 372
Query: 317 RYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATLLRG 357
+ M AF D+ + + +N ++R A+ L ++RVA AT RG
Sbjct: 373 KMMKGAFNDVMKVKEKYNVDMRTAAYILAIDRVAYATKKRG 413
>pdb|3K92|A Chain A, Crystal Structure Of A E93k Mutant Of The Majour Bacillus
Su Glutamate Dehydrogenase Rocg
pdb|3K92|B Chain B, Crystal Structure Of A E93k Mutant Of The Majour Bacillus
Su Glutamate Dehydrogenase Rocg
pdb|3K92|C Chain C, Crystal Structure Of A E93k Mutant Of The Majour Bacillus
Su Glutamate Dehydrogenase Rocg
pdb|3K92|D Chain D, Crystal Structure Of A E93k Mutant Of The Majour Bacillus
Su Glutamate Dehydrogenase Rocg
pdb|3K92|E Chain E, Crystal Structure Of A E93k Mutant Of The Majour Bacillus
Su Glutamate Dehydrogenase Rocg
pdb|3K92|F Chain F, Crystal Structure Of A E93k Mutant Of The Majour Bacillus
Su Glutamate Dehydrogenase Rocg
Length = 424
Score = 325 bits (833), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 162/409 (39%), Positives = 237/409 (57%), Gaps = 51/409 (12%)
Query: 1 MNALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDN 60
+N +T + A R LG + + P R + V + D+GS+ F G+R QH++
Sbjct: 15 LNLFLSTQTIIKEALRKLGYPGDMYELMKEPQRMLTVRIPVKMDNGSVKVFTGYRSQHND 74
Query: 61 ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERL 120
A GP KGG+R+HPEV+ ++V AL+ MT K +A +PYGG KGGI C+PR +S ELERL
Sbjct: 75 AVGPTKGGVRFHPEVNEEKVKALSIWMTLKCGIANLPYGGGKGGIICDPRTMSFGELERL 134
Query: 121 TRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHG-HSPAVVTGKPIDLGGSL 179
+R + + I ++G +D+PAPD+ TNSQ MAW++DEYS+ SP +TGKP+ LGGS
Sbjct: 135 SRGYVRAISQIVGPTKDIPAPDVYTNSQIMAWMMDEYSRLREFDSPGFITGKPLVLGGSQ 194
Query: 180 GREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239
GRE AT GV E + + G + N + IQGFGN GS+ AKF H+ G KV+ +SD
Sbjct: 195 GRETATAQGVTICIEEAVKKKGIKLQNARIIIQGFGNAGSFLAKFMHDAGAKVIGISDAN 254
Query: 240 GGVLNKE--------------------------------------------------NAA 249
GG+ N + NA
Sbjct: 255 GGLYNPDGLDIPYLLDKRDSFGMVTNLFTDVITNEELLEKDCDILVPAAISNQITAKNAH 314
Query: 250 DVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEE 309
+++A ++E AN PT +A +IL+++GV+++PDI A++GGVTVSYFEWVQN QG+ W EE
Sbjct: 315 NIQASIVVERANGPTTIDATKILNERGVLLVPDILASAGGVTVSYFEWVQNNQGYYWSEE 374
Query: 310 KVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATLLRGW 358
+V +L+ M+S+F+ I TH ++R+ A+ G+ + A+A+ RGW
Sbjct: 375 EVAEKLRSVMVSSFETIYQTAATHKVDMRLAAYMTGIRKSAEASRFRGW 423
>pdb|2TMG|A Chain A, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|B Chain B, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|C Chain C, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|D Chain D, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|E Chain E, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|F Chain F, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
Length = 415
Score = 310 bits (793), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 175/401 (43%), Positives = 236/401 (58%), Gaps = 53/401 (13%)
Query: 10 NFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGI 69
F AA ++ L+S L L P R + VE + DDG + F G+R+QH+ ARGP KGGI
Sbjct: 12 QFNRAASLMDLESDLAEVLRRPKRVLIVEFPVRMDDGHVEVFTGYRVQHNVARGPAKGGI 71
Query: 70 RYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIH 129
RYHP+V DEV ALA MTWKTAV +P+GG KGG+ +P++LS ELERL+R F ++I
Sbjct: 72 RYHPDVTLDEVKALAFWMTWKTAVMNLPFGGGKGGVRVDPKKLSRRELERLSRRFFREIQ 131
Query: 130 DLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSP-AVVTGKPIDLGGSLGREAATGLG 188
+IG + D+PAPD+ TN+ +AW +DEY GH+ +VTGKP++LGGS GRE ATG G
Sbjct: 132 VIIGPYNDIPAPDVNTNADVIAWYMDEYEMNVGHTVLGIVTGKPVELGGSKGREEATGRG 191
Query: 189 VFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFF-HEHGGKVVAVSDITGGVLNKE- 246
V + G A+QGFGNVG +AA E G KVVAVSD GG+ N E
Sbjct: 192 VKVCAGLAMDVLGIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEG 251
Query: 247 --------------------------------------------------NAADVKAKFI 256
NA +KAK +
Sbjct: 252 FDVEELIRYKKEHGTVVTYPKGERITNEELLELDVDILVPAALEGAIHAGNAERIKAKAV 311
Query: 257 IEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELK 316
+E AN PT PEADEILS++G++++PDI AN+GGVTVSYFEWVQ++Q F W+ ++V + L+
Sbjct: 312 VEGANGPTTPEADEILSRRGILVVPDILANAGGVTVSYFEWVQDLQSFFWDLDQVRNALE 371
Query: 317 RYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATLLRG 357
+ M AF D+ + + +N ++R A+ L ++RVA AT RG
Sbjct: 372 KMMKGAFNDVMKVKEKYNVDMRTAAYILAIDRVAYATKKRG 412
>pdb|3AOE|A Chain A, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|B Chain B, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
Length = 424
Score = 308 bits (789), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 173/392 (44%), Positives = 227/392 (57%), Gaps = 52/392 (13%)
Query: 18 LGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDP 77
LG + L SL P R + V+ + DDGS+A F G+R+ H+ ARGP KGG+RYHPEV
Sbjct: 30 LGRLAPLAESLKRPKRVLIVDVPVRLDDGSVAYFEGYRVHHNTARGPAKGGVRYHPEVTL 89
Query: 78 DEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRD 137
EV ALA MT K A +PYGG KGGI +PR+LS ELERLTR +T +I L+G RD
Sbjct: 90 SEVMALAGWMTIKNAAVGLPYGGGKGGIRVDPRKLSPGELERLTRRYTSEIGILLGPDRD 149
Query: 138 VPAPDMGTNSQTMAWILDEYSKFHGHS-PAVVTGKPIDLGGSLGREAATGLGVFFATEAL 196
+PAPD+ T + MAW++D YS G + P VVTGKPI LGGSLGR ATG GVF A
Sbjct: 150 IPAPDVNTGEREMAWMMDTYSMNVGRTVPGVVTGKPIALGGSLGRRDATGRGVFITAAAA 209
Query: 197 LAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGGVLN------------ 244
+ G + + AIQGFGNVG+ AA+ FH+HG +VVAV D TG V N
Sbjct: 210 AEKIGLQVEGARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTVYNEAGIDPYDLLRH 269
Query: 245 ---------------------------------------KENAADVKAKFIIEAANHPTD 265
++NA ++A+ + E AN PT
Sbjct: 270 VQEFGGVRGYPKAEPLPAADFWGLPVEFLVPAALEKQITEQNAWRIRARIVAEGANGPTT 329
Query: 266 PEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKD 325
P AD+IL +KGV+++PD+ AN+GGVTVSYFEWVQ+ + W EE++N L+R + +AF+
Sbjct: 330 PAADDILLEKGVLVVPDVIANAGGVTVSYFEWVQDFNSYFWTEEEINARLERVLRNAFEA 389
Query: 326 IKTMCQTHNCNLRMGAFTLGVNRVAQATLLRG 357
+ + Q LR A+ + RV +A LRG
Sbjct: 390 VWQVAQEKKIPLRTAAYVVAATRVLEARALRG 421
>pdb|3AOG|A Chain A, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|B Chain B, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|C Chain C, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|D Chain D, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|E Chain E, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|F Chain F, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|G Chain G, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|H Chain H, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|I Chain I, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|J Chain J, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|K Chain K, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|L Chain L, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
Length = 440
Score = 308 bits (789), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 173/392 (44%), Positives = 227/392 (57%), Gaps = 52/392 (13%)
Query: 18 LGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDP 77
LG + L SL P R + V+ + DDGS+A F G+R+ H+ ARGP KGG+RYHPEV
Sbjct: 46 LGRLAPLAESLKRPKRVLIVDVPVRLDDGSVAYFEGYRVHHNTARGPAKGGVRYHPEVTL 105
Query: 78 DEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRD 137
EV ALA MT K A +PYGG KGGI +PR+LS ELERLTR +T +I L+G RD
Sbjct: 106 SEVMALAGWMTIKNAAVGLPYGGGKGGIRVDPRKLSPGELERLTRRYTSEIGILLGPDRD 165
Query: 138 VPAPDMGTNSQTMAWILDEYSKFHGHS-PAVVTGKPIDLGGSLGREAATGLGVFFATEAL 196
+PAPD+ T + MAW++D YS G + P VVTGKPI LGGSLGR ATG GVF A
Sbjct: 166 IPAPDVNTGEREMAWMMDTYSMNVGRTVPGVVTGKPIALGGSLGRRDATGRGVFITAAAA 225
Query: 197 LAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGGVLN------------ 244
+ G + + AIQGFGNVG+ AA+ FH+HG +VVAV D TG V N
Sbjct: 226 AEKIGLQVEGARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTVYNEAGIDPYDLLRH 285
Query: 245 ---------------------------------------KENAADVKAKFIIEAANHPTD 265
++NA ++A+ + E AN PT
Sbjct: 286 VQEFGGVRGYPKAEPLPAADFWGLPVEFLVPAALEKQITEQNAWRIRARIVAEGANGPTT 345
Query: 266 PEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKD 325
P AD+IL +KGV+++PD+ AN+GGVTVSYFEWVQ+ + W EE++N L+R + +AF+
Sbjct: 346 PAADDILLEKGVLVVPDVIANAGGVTVSYFEWVQDFNSYFWTEEEINARLERVLRNAFEA 405
Query: 326 IKTMCQTHNCNLRMGAFTLGVNRVAQATLLRG 357
+ + Q LR A+ + RV +A LRG
Sbjct: 406 VWQVAQEKKIPLRTAAYVVAATRVLEARALRG 437
>pdb|1BVU|A Chain A, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|B Chain B, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|C Chain C, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|D Chain D, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|E Chain E, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|F Chain F, Glutamate Dehydrogenase From Thermococcus Litoralis
Length = 418
Score = 301 bits (772), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 165/405 (40%), Positives = 219/405 (54%), Gaps = 55/405 (13%)
Query: 9 RNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGG 68
+ AA+ + + + L P R ++V + DDGS+ F GFR+Q++ ARGP KGG
Sbjct: 11 KQLERAAQYMDISEEALEFLKRPQRIVEVSIPVEMDDGSVKVFTGFRVQYNWARGPTKGG 70
Query: 69 IRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKI 128
IR+HPE V ALA MTWKTAV +PYGG KGG+ CNP+E+S E ERL R + + I
Sbjct: 71 IRWHPEETLSTVKALAAWMTWKTAVMDLPYGGGKGGVICNPKEMSDREKERLARGYVRAI 130
Query: 129 HDLIGIHRDVPAPDMGTNSQTMAWILDEY---SKFHGHSPAVVTGKPIDLGGSLGREAAT 185
+D+I + D+PAPD+ TN Q MAW++DEY S+ S V+TGKP +GG + R AT
Sbjct: 131 YDVISPYTDIPAPDVYTNPQIMAWMMDEYETISRRKDPSFGVITGKPPSVGGIVARMDAT 190
Query: 186 GLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFF-HEHGGKVVAVSDITGGVLN 244
G + G + AIQG+GN G + AK E+G KVVAVSD GG+ N
Sbjct: 191 ARGASYTVREAAKALGMDLKGKTIAIQGYGNAGYYMAKIMSEEYGMKVVAVSDTKGGIYN 250
Query: 245 ---------------------------------------------------KENAADVKA 253
K+NA ++KA
Sbjct: 251 PDGLNADEVLAWKKKTGSVKDFPGATNITNEELLELEVDVLAPSAIEEVITKKNADNIKA 310
Query: 254 KFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNH 313
K + E AN PT PEADEIL +KG++I+PD N+GGVTVSYFEWVQNI G W E+
Sbjct: 311 KIVAELANGPTTPEADEILYEKGILIIPDFLCNAGGVTVSYFEWVQNITGDYWTVEETRA 370
Query: 314 ELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATLLRGW 358
+L + M AF D+ + N N+R A+ + V+RV QA RGW
Sbjct: 371 KLDKKMTKAFWDVYNTHKEKNINMRDAAYVVAVSRVYQAMKDRGW 415
>pdb|1EUZ|A Chain A, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|B Chain B, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|C Chain C, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|D Chain D, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|E Chain E, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|F Chain F, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
Length = 419
Score = 301 bits (770), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 162/405 (40%), Positives = 218/405 (53%), Gaps = 55/405 (13%)
Query: 9 RNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGG 68
+ AA+ + + + L P R ++V I DDGS+ F GFR+QH+ ARGP KGG
Sbjct: 12 KQLERAAQYMDISEEALEWLKKPMRIVEVSVPIEMDDGSVKVFTGFRVQHNWARGPTKGG 71
Query: 69 IRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKI 128
IR+HP V ALA MTWK AV +PYGG KGGI NP+ELS E ERL R + + +
Sbjct: 72 IRWHPAETLSTVKALATWMTWKVAVVDLPYGGGKGGIIVNPKELSEREQERLARAYIRAV 131
Query: 129 HDLIGIHRDVPAPDMGTNSQTMAWILDEYS---KFHGHSPAVVTGKPIDLGGSLGREAAT 185
+D+IG D+PAPD+ TN + M W++DEY + G + V+TGKP+ +GGSLGR AT
Sbjct: 132 YDVIGPWTDIPAPDVYTNPKIMGWMMDEYETIMRRKGPAFGVITGKPLSIGGSLGRGTAT 191
Query: 186 GLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEH-GGKVVAVSDITGGVLN 244
G F G + K A+QG+GN G + AK E G VVAVSD GG+ N
Sbjct: 192 AQGAIFTIREAAKALGIDLKGKKIAVQGYGNAGYYTAKLAKEQLGMTVVAVSDSRGGIYN 251
Query: 245 ---------------------------------------------------KENAADVKA 253
++NA ++KA
Sbjct: 252 PDGLDPDEVLKWKREHGSVKDFPGATNITNEELLELEVDVLAPAAIEEVITEKNADNIKA 311
Query: 254 KFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNH 313
K + E AN P PEAD+IL +KG++ +PD N+GGVTVSYFEWVQNI G+ W EE+V
Sbjct: 312 KIVAEVANGPVTPEADDILREKGILQIPDFLCNAGGVTVSYFEWVQNINGYYWTEEEVRE 371
Query: 314 ELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATLLRGW 358
+L + M AF ++ + N ++R A+ + V+RV QA RGW
Sbjct: 372 KLDKKMTKAFWEVYNTHKDKNIHMRDAAYVVAVSRVYQAMKDRGW 416
>pdb|3K8Z|A Chain A, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
pdb|3K8Z|B Chain B, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
pdb|3K8Z|C Chain C, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
pdb|3K8Z|D Chain D, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
pdb|3K8Z|E Chain E, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
pdb|3K8Z|F Chain F, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
Length = 423
Score = 300 bits (768), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 160/409 (39%), Positives = 235/409 (57%), Gaps = 52/409 (12%)
Query: 1 MNALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDN 60
++ L +T A LG ++ L P R + V+ + DDGS+ F G+R H++
Sbjct: 15 LDVLKSTQTVIHKALEKLGYPEEVYELLKEPMRLLTVKIPVRMDDGSVKIFTGYR-AHND 73
Query: 61 ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERL 120
+ GP KGGIR+HP V EV AL+ M+ K + +PYGG KGGI C+PR++S ELERL
Sbjct: 74 SVGPTKGGIRFHPNVTEKEVKALSIWMSLKCGIIDLPYGGGKGGIVCDPRDMSFRELERL 133
Query: 121 TRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHG-HSPAVVTGKPIDLGGSL 179
+R + + I ++G +DVPAPD+ TNSQ MAW++DEYS+ +SP +TGKP+ LGGS
Sbjct: 134 SRGYVRAISQIVGPTKDVPAPDVFTNSQIMAWMMDEYSRIDEFNSPGFITGKPLVLGGSH 193
Query: 180 GREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239
GRE+AT GV + + G I + +QGFGN GS+ AKF H+ G KVV +SD
Sbjct: 194 GRESATAKGVTICIKEAAKKRGIDIKGARVVVQGFGNAGSYLAKFMHDAGAKVVGISDAY 253
Query: 240 GGV--------------------------------------------------LNKENAA 249
GG+ + +ENA
Sbjct: 254 GGLYDPEGLDIDYLLDRRDSFGTVTKLFNDTITNQELLELDCDILVPAAIENQITEENAH 313
Query: 250 DVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEE 309
+++AK ++EAAN PT E +ILS + ++++PD+ A++GGVTVSYFEWVQN QGF W EE
Sbjct: 314 NIRAKIVVEAANGPTTLEGTKILSDRDILLVPDVLASAGGVTVSYFEWVQNNQGFYWSEE 373
Query: 310 KVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATLLRGW 358
+V +L++ M+ +F +I M ++R+ A+ +GV ++A+A+ RGW
Sbjct: 374 EVEEKLEKMMVKSFNNIYEMANNRRIDMRLAAYMVGVRKMAEASRFRGW 422
>pdb|1GTM|A Chain A, Structure Of Glutamate Dehydrogenase
pdb|1GTM|B Chain B, Structure Of Glutamate Dehydrogenase
pdb|1GTM|C Chain C, Structure Of Glutamate Dehydrogenase
Length = 419
Score = 300 bits (768), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 167/406 (41%), Positives = 222/406 (54%), Gaps = 56/406 (13%)
Query: 9 RNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGG 68
+ AA+ + + + L P R ++V + DDGS+ F GFR+QH+ ARGP KGG
Sbjct: 11 KQLERAAQYMEISEEALEFLKRPQRIVEVTIPVEMDDGSVKVFTGFRVQHNWARGPTKGG 70
Query: 69 IRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKI 128
IR+HPE V ALA MTWKTAV +PYGG KGGI +P++LS E ERL R + + I
Sbjct: 71 IRWHPEETLSTVKALAAWMTWKTAVMDLPYGGGKGGIIVDPKKLSDREKERLARGYIRAI 130
Query: 129 HDLIGIHRDVPAPDMGTNSQTMAWILDEYSKF-HGHSPA--VVTGKPIDLGGSLGREAAT 185
+D+I + D+PAPD+ TN Q MAW++DEY +PA ++TGKP+ +GGSLGR AT
Sbjct: 131 YDVISPYEDIPAPDVYTNPQIMAWMMDEYETISRRKTPAFGIITGKPLSIGGSLGRIEAT 190
Query: 186 GLGVFFAT-EALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEH-GGKVVAVSDITGGVL 243
G + EA ++ AIQG+GN G + AK E G KVVAVSD GG+
Sbjct: 191 ARGASYTIREAAKVLGWDTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIY 250
Query: 244 N---------------------------------------------------KENAADVK 252
N K+NA ++K
Sbjct: 251 NPDGLNADEVLKWKNEHGSVKDFPGATNITNEELLELEVDVLAPAAIEEVITKKNADNIK 310
Query: 253 AKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVN 312
AK + E AN P PEADEIL +KG++ +PD N+GGVTVSYFEWVQNI G+ W E+V
Sbjct: 311 AKIVAEVANGPVTPEADEILFEKGILQIPDFLCNAGGVTVSYFEWVQNITGYYWTIEEVR 370
Query: 313 HELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATLLRGW 358
L + M AF D+ + + N ++R A+ + V RV QA L RGW
Sbjct: 371 ERLDKKMTKAFYDVYNIAKEKNIHMRDAAYVVAVQRVYQAMLDRGW 416
>pdb|2YFQ|A Chain A, Crystal Structure Of Glutamate Dehydrogenase From
Peptoniphilus Asaccharolyticus
pdb|2YFQ|B Chain B, Crystal Structure Of Glutamate Dehydrogenase From
Peptoniphilus Asaccharolyticus
Length = 421
Score = 257 bits (656), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 152/416 (36%), Positives = 208/416 (50%), Gaps = 58/416 (13%)
Query: 1 MNALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDN 60
+N L A R A LG D + L P R I++ + DDG++ F G+R H +
Sbjct: 5 LNPLVAAQEKVRIACEKLGCDPAVYELLKEPQRVIEISIPVKMDDGTVKVFKGWRSAHSS 64
Query: 61 ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERL 120
A GP KGG+R+HP V+ DEV AL+ MT+K +PYGG KGGI +P ELS ELE+L
Sbjct: 65 AVGPSKGGVRFHPNVNMDEVKALSLWMTFKGGALGLPYGGGKGGICVDPAELSERELEQL 124
Query: 121 TRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAV--VTGKPIDLGGS 178
+R + + ++ +G D+PAPD+ TN Q M+W +DEY K +G + TGKP+ GGS
Sbjct: 125 SRGWVRGLYKYLGDRIDIPAPDVNTNGQIMSWFVDEYVKLNGERMDIGTFTGKPVAFGGS 184
Query: 179 LGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVS-- 236
GR ATG GV G + + K A+QGFGNVG++ K GGKV A++
Sbjct: 185 EGRNEATGFGVAVVVRESAKRFGIKMEDAKIAVQGFGNVGTFTVKNIERQGGKVCAIAEW 244
Query: 237 DITGG--VLNKENAADVK------------------------------------------ 252
D G L EN D K
Sbjct: 245 DRNEGNYALYNENGIDFKELLAYKEANKTLIGFPGAERITDEEFWTKEYDIIVPAALENV 304
Query: 253 ----------AKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQ 302
AK + EAAN PT PE D++L+++G+ + PDI NSGGV VSY+EWVQN
Sbjct: 305 ITGERAKTINAKLVCEAANGPTTPEGDKVLTERGINLTPDILTNSGGVLVSYYEWVQNQY 364
Query: 303 GFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATLLRGW 358
G+ W E +V + + MM A K + + +N LR + + + A LRGW
Sbjct: 365 GYYWTEAEVEEKQEADMMKAIKGVFAVADEYNVTLREAVYMYAIKSIDVAMKLRGW 420
>pdb|3ETD|A Chain A, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|B Chain B, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|C Chain C, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|D Chain D, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|E Chain E, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|F Chain F, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETE|A Chain A, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|B Chain B, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|C Chain C, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|D Chain D, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|E Chain E, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|F Chain F, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETG|A Chain A, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|B Chain B, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|C Chain C, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|D Chain D, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|E Chain E, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|F Chain F, Glutamate Dehydrogenase Complexed With Gw5074
Length = 501
Score = 228 bits (580), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 134/326 (41%), Positives = 172/326 (52%), Gaps = 64/326 (19%)
Query: 41 IPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGG 100
I +DDGS G+R QH R P KGGIRY +V DEV ALA LMT+K AV +P+GG
Sbjct: 65 IRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGG 124
Query: 101 AKGGIGCNPRELSMSELERLTRVFTQKI--HDLIGIHRDVPAPDMGTNSQTMAWILDEYS 158
AK G+ NP+ + +ELE++TR FT ++ IG DVPAPDM T + M+WI D Y+
Sbjct: 125 AKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGVDVPAPDMSTGEREMSWIADTYA 184
Query: 159 KFHGH----SPAVVTGKPIDLGGSLGREAATGLGVFFATEALLAEHG-KSISNM------ 207
GH + A VTGKPI GG GR +ATG GVF E + E SI M
Sbjct: 185 STIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGD 244
Query: 208 -KFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGGV------------------------ 242
FA+QGFGNVG + ++ H G K VAV + G +
Sbjct: 245 KTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGF 304
Query: 243 --------------------------LNKENAADVKAKFIIEAANHPTDPEADEILSKKG 276
L K NA VKAK I E AN PT PEAD+I ++
Sbjct: 305 PKAKIYEGSILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLERN 364
Query: 277 VVILPDIYANSGGVTVSYFEWVQNIQ 302
++++PD+Y N+GGVTVSYFEW++N+
Sbjct: 365 IMVIPDLYLNAGGVTVSYFEWLKNLN 390
>pdb|3AOE|E Chain E, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|F Chain F, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|C Chain C, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|D Chain D, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
Length = 419
Score = 227 bits (579), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 133/375 (35%), Positives = 186/375 (49%), Gaps = 48/375 (12%)
Query: 31 PFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWK 90
P R + + + DDG + F G+R+ HD ARGP KGG+R P V + LA MT K
Sbjct: 42 PKRLVTLSLPVVMDDGKVRIFQGYRVVHDIARGPAKGGVRLDPGVTLGQTAGLAAWMTLK 101
Query: 91 TAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTM 150
AV +P+GGA GGI +P+ LS ELERL R +T ++ LIG D+ PD+G + Q M
Sbjct: 102 AAVYDLPFGGAAGGIAVDPKGLSPQELERLVRRYTAELVGLIGPDSDILGPDLGADQQVM 161
Query: 151 AWILDEYSKFHGHS-PAVVTGKPIDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKF 209
AWI+D YS G + P VVTGKP LGGS GR+ A GLG EAL G + +
Sbjct: 162 AWIMDTYSMTVGSTVPGVVTGKPHALGGSEGRDDAAGLGALLVLEALAKRRGLDLRGARV 221
Query: 210 AIQGFGNVGSWAAKFFHEHGGKVVAVSDITGGV--------------------------- 242
+QG G VG+ A G +VVAV+ GG+
Sbjct: 222 VVQGLGQVGAAVALHAERLGMRVVAVATSMGGMYAPEGLDVAEVLSAYEATGSLPRLDLA 281
Query: 243 --------------------LNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPD 282
L+ + A V+A+ ++E AN +PEA+ L KG +++PD
Sbjct: 282 PEEVFGLEAEVLVLAAREGALDGDRARQVQAQAVVEVANFGLNPEAEAYLLGKGALVVPD 341
Query: 283 IYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAF 342
+ + GG+ SY EWVQ++ F W E+V + + + + +LRMGA
Sbjct: 342 LLSGGGGLLASYLEWVQDLNMFFWSPEEVRERFETRVARVVDAVCRRAERGGLDLRMGAL 401
Query: 343 TLGVNRVAQATLLRG 357
L + R+ +AT LRG
Sbjct: 402 ALALERLDEATRLRG 416
>pdb|1NQT|A Chain A, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|B Chain B, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|C Chain C, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|D Chain D, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|E Chain E, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|F Chain F, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|G Chain G, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|H Chain H, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|I Chain I, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|J Chain J, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|K Chain K, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|L Chain L, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NR7|A Chain A, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|B Chain B, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|C Chain C, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|D Chain D, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|E Chain E, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|F Chain F, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|G Chain G, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|H Chain H, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|I Chain I, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|J Chain J, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|K Chain K, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|L Chain L, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
Length = 496
Score = 225 bits (574), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 132/326 (40%), Positives = 172/326 (52%), Gaps = 64/326 (19%)
Query: 41 IPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGG 100
I +DDGS G+R QH + R P KGGIRY +V DEV ALA LMT+K AV +P+GG
Sbjct: 60 IRRDDGSWEVIEGYRAQHSHQRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGG 119
Query: 101 AKGGIGCNPRELSMSELERLTRVFTQKI--HDLIGIHRDVPAPDMGTNSQTMAWILDEYS 158
AK G+ NP+ + +ELE++TR FT ++ IG DVPAPDM T + M+WI D Y+
Sbjct: 120 AKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGIDVPAPDMSTGEREMSWIADTYA 179
Query: 159 KFHGH----SPAVVTGKPIDLGGSLGREAATGLGVFFATEALLAEHG-KSISNM------ 207
GH + A VTGKPI GG GR +ATG GVF E + E SI M
Sbjct: 180 STIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGD 239
Query: 208 -KFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGGV------------------------ 242
F +QGFGNVG + ++ H G K +AV + G +
Sbjct: 240 KTFVVQGFGNVGLHSMRYLHRFGAKCIAVGESDGSIWNPDGIDPKELEDFKLQHGSILGF 299
Query: 243 --------------------------LNKENAADVKAKFIIEAANHPTDPEADEILSKKG 276
L K NA VKAK I E AN PT PEAD+I ++
Sbjct: 300 PKAKPYEGSILEADCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLERN 359
Query: 277 VVILPDIYANSGGVTVSYFEWVQNIQ 302
++++PD+Y N+GGVTVSYFEW++N+
Sbjct: 360 IMVIPDLYLNAGGVTVSYFEWLKNLN 385
>pdb|1L1F|A Chain A, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|B Chain B, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|C Chain C, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|D Chain D, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|E Chain E, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|F Chain F, Structure Of Human Glutamate Dehydrogenase-Apo Form
Length = 505
Score = 225 bits (574), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 132/326 (40%), Positives = 171/326 (52%), Gaps = 64/326 (19%)
Query: 41 IPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGG 100
I +DDGS G+R QH R P KGGIRY +V DEV ALA LMT+K AV +P+GG
Sbjct: 69 IRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGG 128
Query: 101 AKGGIGCNPRELSMSELERLTRVFTQKI--HDLIGIHRDVPAPDMGTNSQTMAWILDEYS 158
AK G+ NP+ + +ELE++TR FT ++ IG DVPAPDM T + M+WI D Y+
Sbjct: 129 AKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGIDVPAPDMSTGEREMSWIADTYA 188
Query: 159 KFHGH----SPAVVTGKPIDLGGSLGREAATGLGVFFATEALLAEHG-KSISNM------ 207
GH + A VTGKPI GG GR +ATG GVF E + E SI M
Sbjct: 189 STIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGD 248
Query: 208 -KFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGGV------------------------ 242
F +QGFGNVG + ++ H G K +AV + G +
Sbjct: 249 KTFVVQGFGNVGLHSMRYLHRFGAKCIAVGESDGSIWNPDGIDPKELEDFKLQHGSILGF 308
Query: 243 --------------------------LNKENAADVKAKFIIEAANHPTDPEADEILSKKG 276
L K NA VKAK I E AN PT PEAD+I ++
Sbjct: 309 PKAKPYEGSILEADCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLERN 368
Query: 277 VVILPDIYANSGGVTVSYFEWVQNIQ 302
++++PD+Y N+GGVTVSYFEW++N+
Sbjct: 369 IMVIPDLYLNAGGVTVSYFEWLKNLN 394
>pdb|1NR1|A Chain A, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|B Chain B, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|C Chain C, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|D Chain D, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|E Chain E, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|F Chain F, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
Length = 496
Score = 225 bits (573), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 132/326 (40%), Positives = 171/326 (52%), Gaps = 64/326 (19%)
Query: 41 IPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGG 100
I +DDGS G+R QH R P KGGIRY +V DEV ALA LMT+K AV +P+GG
Sbjct: 60 IRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGG 119
Query: 101 AKGGIGCNPRELSMSELERLTRVFTQKI--HDLIGIHRDVPAPDMGTNSQTMAWILDEYS 158
AK G+ NP+ + +ELE++TR FT ++ IG DVPAPDM T + M+WI D Y+
Sbjct: 120 AKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGIDVPAPDMSTGEREMSWIADTYA 179
Query: 159 KFHGH----SPAVVTGKPIDLGGSLGREAATGLGVFFATEALLAEHG-KSISNM------ 207
GH + A VTGKPI GG GR +ATG GVF E + E SI M
Sbjct: 180 STIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGD 239
Query: 208 -KFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGGV------------------------ 242
F +QGFGNVG + ++ H G K +AV + G +
Sbjct: 240 KTFVVQGFGNVGLHSMRYLHRFGAKCIAVGESDGSIWNPDGIDPKELEDFKLQHGSILGF 299
Query: 243 --------------------------LNKENAADVKAKFIIEAANHPTDPEADEILSKKG 276
L K NA VKAK I E AN PT PEAD+I ++
Sbjct: 300 PKAKPYEGSILEADCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLERN 359
Query: 277 VVILPDIYANSGGVTVSYFEWVQNIQ 302
++++PD+Y N+GGVTVSYFEW++N+
Sbjct: 360 IMVIPDLYLNAGGVTVSYFEWLKNLN 385
>pdb|3MW9|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|B Chain B, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|C Chain C, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|D Chain D, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|E Chain E, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|F Chain F, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MVO|A Chain A, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|B Chain B, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|C Chain C, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|D Chain D, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|E Chain E, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|F Chain F, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVQ|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|B Chain B, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|C Chain C, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|D Chain D, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|E Chain E, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|F Chain F, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3QMU|A Chain A, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|B Chain B, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|C Chain C, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|D Chain D, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|E Chain E, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|F Chain F, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|G Chain G, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|H Chain H, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|I Chain I, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|J Chain J, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|K Chain K, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|L Chain L, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
Length = 501
Score = 223 bits (569), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 131/326 (40%), Positives = 169/326 (51%), Gaps = 64/326 (19%)
Query: 41 IPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGG 100
I +DDGS G+R QH R P KGGIRY +V DEV ALA LMT+K AV +P+GG
Sbjct: 65 IRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGG 124
Query: 101 AKGGIGCNPRELSMSELERLTRVFTQKI--HDLIGIHRDVPAPDMGTNSQTMAWILDEYS 158
AK G+ NP+ + +ELE++TR FT ++ IG DVPAPDM T + M+WI D Y+
Sbjct: 125 AKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGVDVPAPDMSTGEREMSWIADTYA 184
Query: 159 KFHGH----SPAVVTGKPIDLGGSLGREAATGLGVFFATEALLAEHG-KSISNM------ 207
GH + A VTGKPI GG GR +ATG GVF E + E SI M
Sbjct: 185 STIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGD 244
Query: 208 -KFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGGV------------------------ 242
F +QGFGNVG + ++ H G K + V + G +
Sbjct: 245 KTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDGIDPKELEDFKLQHGTILGF 304
Query: 243 --------------------------LNKENAADVKAKFIIEAANHPTDPEADEILSKKG 276
L K NA VKAK I E AN PT PEAD+I ++
Sbjct: 305 PKAKIYEGSILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIFLERN 364
Query: 277 VVILPDIYANSGGVTVSYFEWVQNIQ 302
++++PD+Y N+GGVTVSYFEW+ N+
Sbjct: 365 IMVIPDLYLNAGGVTVSYFEWLNNLN 390
>pdb|1HWY|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWY|B Chain B, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWY|C Chain C, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWY|D Chain D, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWY|E Chain E, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWY|F Chain F, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWZ|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
pdb|1HWZ|B Chain B, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
pdb|1HWZ|C Chain C, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
pdb|1HWZ|D Chain D, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
pdb|1HWZ|E Chain E, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
pdb|1HWZ|F Chain F, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
Length = 501
Score = 216 bits (550), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 127/326 (38%), Positives = 172/326 (52%), Gaps = 66/326 (20%)
Query: 41 IPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGG 100
I +DDGS G+R QH + R P KGGIRY +V DEV ALA LMT+K AV +P+GG
Sbjct: 65 IRRDDGSWEVIEGYRAQHSHQRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGG 124
Query: 101 AKGGIGCNPRELSMSELERLTRVFTQKI--HDLIGIHRDVPAPDMGTNSQTMAWILDEYS 158
AK G+ NP+ + +LE++TR FT ++ IG DVPAP+M T + M+WI D Y+
Sbjct: 125 AKAGVKINPKNYTDEDLEKITRRFTMELAKKGFIGPGVDVPAPNMSTGEREMSWIADTYA 184
Query: 159 KFHGH----SPAVVTGKPIDLGGSLGREAATGLGVFFATEALLAEHGKSIS--------- 205
GH + A VTGKPI GG GR +ATG GVF E + E+ +S
Sbjct: 185 STIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFI-ENASYMSILGMTPGFG 243
Query: 206 NMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGGV----------------------- 242
+ FA+QGFGNVG + ++ H G K VAV + G +
Sbjct: 244 DKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILG 303
Query: 243 ---------------------------LNKENAADVKAKFIIEAANHPTDPEADEILSKK 275
L K NA VKAK I E AN PT P+AD+I ++
Sbjct: 304 FPKAKIYEGSILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPQADKIFLER 363
Query: 276 GVVILPDIYANSGGVTVSYFEWVQNI 301
++++PD+Y N+GGVTVSYF+ ++N+
Sbjct: 364 NIMVIPDLYLNAGGVTVSYFQILKNL 389
>pdb|1V9L|A Chain A, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|B Chain B, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|C Chain C, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|D Chain D, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|E Chain E, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|F Chain F, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
Length = 421
Score = 199 bits (505), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 105/229 (45%), Positives = 138/229 (60%), Gaps = 1/229 (0%)
Query: 19 GLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPD 78
G + L P R + V + D G F G+R+QH + GP KGG+R+HPEV
Sbjct: 22 GFPEDFYKILSRPRRVLIVNIPVRLDGGGFEVFEGYRVQHCDVLGPYKGGVRFHPEVTLA 81
Query: 79 EVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDV 138
+ ALA LMT K ++A +PYGGAKG + +P++LS ELE L+R + + I LIG D+
Sbjct: 82 DDVALAILMTLKNSLAGLPYGGAKGAVRVDPKKLSQRELEELSRGYARAIAPLIGDVVDI 141
Query: 139 PAPDMGTNSQTMAWILDEYSKFHGHS-PAVVTGKPIDLGGSLGREAATGLGVFFATEALL 197
PAPD+GTN+Q MAW++DEYSK G++ P V T KP +L G+ RE ATG GV AT +
Sbjct: 142 PAPDVGTNAQIMAWMVDEYSKIKGYNVPGVFTSKPPELWGNPVREYATGFGVAVATREMA 201
Query: 198 AEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGGVLNKE 246
+ I AIQG GNVG W A + + G KV+AVSDI G KE
Sbjct: 202 KKLWGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKE 250
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 74/118 (62%), Gaps = 1/118 (0%)
Query: 242 VLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNI 301
V+ +NA VKA+ ++E AN PT PEA+ IL ++GVV++PDI AN+GGV +SY EWV+N+
Sbjct: 303 VIRGDNAGLVKARLVVEGANGPTTPEAERILYERGVVVVPDILANAGGVIMSYLEWVENL 362
Query: 302 QGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHN-CNLRMGAFTLGVNRVAQATLLRGW 358
Q ++W+EE+ L+ M++ + + Q +R A + R+ A +RGW
Sbjct: 363 QWYIWDEEETRKRLENIMVNNVERVYKRWQREKGWTMRDAAIVTALERIYNAMKIRGW 420
>pdb|2YFH|A Chain A, Structure Of A Chimeric Glutamate Dehydrogenase
pdb|2YFH|B Chain B, Structure Of A Chimeric Glutamate Dehydrogenase
pdb|2YFH|C Chain C, Structure Of A Chimeric Glutamate Dehydrogenase
pdb|2YFH|D Chain D, Structure Of A Chimeric Glutamate Dehydrogenase
pdb|2YFH|E Chain E, Structure Of A Chimeric Glutamate Dehydrogenase
pdb|2YFH|F Chain F, Structure Of A Chimeric Glutamate Dehydrogenase
Length = 448
Score = 165 bits (417), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 117/398 (29%), Positives = 176/398 (44%), Gaps = 65/398 (16%)
Query: 24 LERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNAL 83
LER ++IP R I+ D+G + G+R+Q + A GP KGG+R+ P V+ + L
Sbjct: 49 LER-MVIPERVIEFRVPWEDDNGKVHVNTGYRVQFNGAIGPYKGGLRFAPSVNLSIMKFL 107
Query: 84 AQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDM 143
+K ++ +P GGAKGG +P S E+ R + F +++ IG DVPA D+
Sbjct: 108 GFEQAFKDSLTTLPMGGAKGGSDFDPNGKSDREVMRFCQAFMTELYRHIGPDIDVPAGDL 167
Query: 144 GTNSQTMAWILDEYSKF-HGHSPAVVTGKPIDLGGSLGREAATGLGVFFATEALLAEHGK 202
G ++ + ++ +Y K G V+TGK GGSL R ATG G+ + TEA+L HG
Sbjct: 168 GVGAREIGYMYGQYRKIVGGFYNGVLTGKARSFGGSLIRPEATGYGLVYFTEAMLKRHGM 227
Query: 203 SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGGVLNK----------------- 245
M+ ++ G GNV +A + E G +V+ SD +G V+++
Sbjct: 228 GFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKAS 287
Query: 246 -----------------------------------ENAADVKA---------KFIIEAAN 261
+N DV A K + E AN
Sbjct: 288 RDGRVADYAKEFGLVYLEGQQPWSLPVDIALPCATQNELDVDAAHQLIANGVKAVAEGAN 347
Query: 262 HPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMS 321
PT EA E+ + GV+ P AN+GGV S E QN W+ EKV+ L M
Sbjct: 348 MPTTIEATELFQQAGVLFAPGKAANAGGVATSGLEMAQNAARLGWKAEKVDARLHHIMTD 407
Query: 322 AFKDIKTMCQTHNC--NLRMGAFTLGVNRVAQATLLRG 357
+ + NL GA +G ++A A + +G
Sbjct: 408 IHDGSAAAAERYGLGYNLVAGANIVGFQKIADAMMAQG 445
>pdb|3SBO|A Chain A, Structure Of E.Coli Gdh From Native Source
pdb|3SBO|B Chain B, Structure Of E.Coli Gdh From Native Source
pdb|3SBO|C Chain C, Structure Of E.Coli Gdh From Native Source
pdb|3SBO|D Chain D, Structure Of E.Coli Gdh From Native Source
pdb|3SBO|E Chain E, Structure Of E.Coli Gdh From Native Source
pdb|3SBO|F Chain F, Structure Of E.Coli Gdh From Native Source
pdb|2YFG|A Chain A, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
pdb|2YFG|B Chain B, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
pdb|2YFG|C Chain C, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
pdb|2YFG|D Chain D, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
pdb|2YFG|F Chain F, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
Length = 447
Score = 163 bits (412), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 119/402 (29%), Positives = 173/402 (43%), Gaps = 71/402 (17%)
Query: 22 SKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVN 81
S LER L+ P R I+ D + +R+Q +A GP KGG+R+HP V+ +
Sbjct: 49 SLLER-LVEPERVIQFRVVWVDDRNQIQVNRAWRVQFSSAIGPYKGGMRFHPSVNLSILK 107
Query: 82 ALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAP 141
L T+K A+ +P GG KGG +P+ S E+ R + +++ +G DVPA
Sbjct: 108 FLGFEQTFKNALTTLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYRHLGADTDVPAG 167
Query: 142 DMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGLGVFFATEALLAEHG 201
D+G + + ++ K ++ V TGK + GGSL R ATG G+ + TEA+L HG
Sbjct: 168 DIGVGGREVGFMAGMMKKLSNNTACVFTGKGLSFGGSLIRPEATGYGLVYFTEAMLKRHG 227
Query: 202 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGGVLNK---------------- 245
M+ ++ G GNV +A + E G +V+ SD +G V+++
Sbjct: 228 MGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKA 287
Query: 246 ------------------------------------ENAADVKA---------KFIIEAA 260
+N DV A K + E A
Sbjct: 288 SRDGRVADYAKEFGLVYLEGQQPWSLPVDIALPCATQNELDVDAAHQLIANGVKAVAEGA 347
Query: 261 NHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMM 320
N PT EA E+ + GV+ P AN+GGV S E QN W+ EKV+ L M+
Sbjct: 348 NMPTTIEATELFQQAGVLFAPGKAANAGGVATSGLEMAQNAARLGWKAEKVDARLHHIML 407
Query: 321 SAFKDIKTMCQTH-----NCNLRMGAFTLGVNRVAQATLLRG 357
DI C H N GA G +VA A L +G
Sbjct: 408 ----DIHHACVEHGGEGEQTNYVQGANIAGFVKVADAMLAQG 445
>pdb|4FCC|A Chain A, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|B Chain B, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|C Chain C, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|D Chain D, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|E Chain E, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|F Chain F, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|G Chain G, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|H Chain H, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|I Chain I, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|J Chain J, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|K Chain K, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|L Chain L, Glutamate Dehydrogenase From E. Coli
pdb|4FHN|X Chain X, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
Length = 450
Score = 162 bits (411), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 119/402 (29%), Positives = 173/402 (43%), Gaps = 71/402 (17%)
Query: 22 SKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVN 81
S LER L+ P R I+ D + +R+Q +A GP KGG+R+HP V+ +
Sbjct: 52 SLLER-LVEPERVIQFRVVWVDDRNQVQVNRAWRVQFSSAIGPYKGGMRFHPSVNLSILK 110
Query: 82 ALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAP 141
L T+K A+ +P GG KGG +P+ S E+ R + +++ +G DVPA
Sbjct: 111 FLGFEQTFKNALTTLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYRHLGADTDVPAG 170
Query: 142 DMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGLGVFFATEALLAEHG 201
D+G + + ++ K ++ V TGK + GGSL R ATG G+ + TEA+L HG
Sbjct: 171 DIGVGGREVGFMAGMMKKLSNNTACVFTGKGLSFGGSLIRPEATGYGLVYFTEAMLKRHG 230
Query: 202 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGGVLNK---------------- 245
M+ ++ G GNV +A + E G +V+ SD +G V+++
Sbjct: 231 MGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKS 290
Query: 246 ------------------------------------ENAADVKA---------KFIIEAA 260
+N DV A K + E A
Sbjct: 291 SRDGRVADYAKEFGLVYLEGQQPWSVPVDIALPCATQNELDVDAAHQLIANGVKAVAEGA 350
Query: 261 NHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMM 320
N PT EA E+ + GV+ P AN+GGV S E QN W+ EKV+ L M+
Sbjct: 351 NMPTTIEATELFQQAGVLFAPGKAANAGGVATSGLEMAQNAARLGWKAEKVDARLHHIML 410
Query: 321 SAFKDIKTMCQTH-----NCNLRMGAFTLGVNRVAQATLLRG 357
DI C H N GA G +VA A L +G
Sbjct: 411 ----DIHHACVEHGGEGEQTNYVQGANIAGFVKVADAMLAQG 448
>pdb|2YFG|E Chain E, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
Length = 447
Score = 162 bits (410), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 119/402 (29%), Positives = 173/402 (43%), Gaps = 71/402 (17%)
Query: 22 SKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVN 81
S LER L+ P R I+ D + +R+Q +A GP KGG+R+HP V+ +
Sbjct: 49 SLLER-LVEPERVIQFRVVWVDDRNQIQVNRAWRVQFSSAIGPYKGGMRFHPSVNLSILK 107
Query: 82 ALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAP 141
L T+K A+ +P GG KGG +P+ S E+ R + +++ +G DVPA
Sbjct: 108 FLGFEQTFKNALTTLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYRHLGADTDVPAG 167
Query: 142 DMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGLGVFFATEALLAEHG 201
D+G + + ++ K ++ V TGK + GGSL R ATG G+ + TEA+L HG
Sbjct: 168 DIGVGGREVGFMAGMMKKLSNNTACVFTGKGLSFGGSLIRPEATGYGLVYFTEAMLKRHG 227
Query: 202 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGGVLNK---------------- 245
M+ ++ G GNV +A + E G +V+ SD +G V+++
Sbjct: 228 MGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGLVVDESGFTKEKLARLIEIKA 287
Query: 246 ------------------------------------ENAADVKA---------KFIIEAA 260
+N DV A K + E A
Sbjct: 288 SRDGRVADYAKEFGLVYLEGQQPWSLPVDIALPCATQNELDVDAAHQLIANGVKAVAEGA 347
Query: 261 NHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMM 320
N PT EA E+ + GV+ P AN+GGV S E QN W+ EKV+ L M+
Sbjct: 348 NMPTTIEATELFQQAGVLFAPGKAANAGGVATSGLEMAQNAARLGWKAEKVDARLHHIML 407
Query: 321 SAFKDIKTMCQTH-----NCNLRMGAFTLGVNRVAQATLLRG 357
DI C H N GA G +VA A L +G
Sbjct: 408 ----DIHHACVEHGGEGEQTNYVQGANIAGFVKVADAMLAQG 445
>pdb|3R3J|A Chain A, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|B Chain B, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|C Chain C, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|D Chain D, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|E Chain E, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|F Chain F, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
Length = 456
Score = 128 bits (322), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 71/232 (30%), Positives = 115/232 (49%)
Query: 31 PFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWK 90
P R I+ D G GFR+Q+++ GP KGG+R+HP V+ + L +K
Sbjct: 64 PERVIQFRVPWINDKGEHKMNRGFRVQYNSVLGPYKGGLRFHPAVNLSVIKFLGFEQIFK 123
Query: 91 TAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTM 150
++ +P GG KGG +P+ S +E+ + + F + IG + DVPA D+G + +
Sbjct: 124 NSLTTLPMGGGKGGSDFDPKGKSENEILKFCQSFMTNLFRYIGPNTDVPAGDIGVGGREI 183
Query: 151 AWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFA 210
++ +Y K V+TGK I GGS R ATG GV + E +L + ++ N K
Sbjct: 184 GYLFGQYKKLKNSFEGVLTGKNIKWGGSNIRAEATGYGVVYFAENVLKDLNDNLENKKCL 243
Query: 211 IQGFGNVGSWAAKFFHEHGGKVVAVSDITGGVLNKENAADVKAKFIIEAANH 262
+ G GNV + + E G V+ +SD G +L + +I++ N+
Sbjct: 244 VSGSGNVAQYLVEKLIEKGAIVLTMSDSNGYILEPNGFTKEQLNYIMDIKNN 295
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 6/118 (5%)
Query: 246 ENAADV----KAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNI 301
EN AD+ K K I+E AN PT +A L + +++ P AN+GGV VS E QN
Sbjct: 337 ENDADLFIQNKCKMIVEGANMPTHIKALHKLKQNNIILCPSKAANAGGVAVSGLEMSQNS 396
Query: 302 QGFMWEEEKVNHELKRYMMSAFKDIKTMCQTH--NCNLRMGAFTLGVNRVAQATLLRG 357
W ++ + +L+ M S ++ + + +L GA G +VA + L +G
Sbjct: 397 MRLQWTHQETDMKLQNIMKSIYEQCHNTSKIYLNESDLVAGANIAGFLKVADSFLEQG 454
>pdb|1HRD|A Chain A, Glutamate Dehydrogenase
pdb|1HRD|B Chain B, Glutamate Dehydrogenase
pdb|1HRD|C Chain C, Glutamate Dehydrogenase
pdb|1BGV|A Chain A, Glutamate Dehydrogenase
Length = 449
Score = 125 bits (315), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 79/237 (33%), Positives = 122/237 (51%), Gaps = 3/237 (1%)
Query: 24 LERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNAL 83
LER ++IP R I+ D+G + G+R+Q + A GP KGG+R+ P V+ + L
Sbjct: 48 LER-MVIPERVIEFRVPWEDDNGKVHVNTGYRVQFNGAIGPYKGGLRFAPSVNLSIMKFL 106
Query: 84 AQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDM 143
+K ++ +P GGAKGG +P S E+ R + F +++ IG DVPA D+
Sbjct: 107 GFEQAFKDSLTTLPMGGAKGGSDFDPNGKSDREVMRFCQAFMTELYRHIGPDIDVPAGDL 166
Query: 144 GTNSQTMAWILDEYSKF-HGHSPAVVTGKPIDLGGSLGREAATGLGVFFATEALLAEHGK 202
G ++ + ++ +Y K G V+TGK GGSL R ATG G + EA++
Sbjct: 167 GVGAREIGYMYGQYRKIVGGFYNGVLTGKARSFGGSLVRPEATGYGSVYYVEAVMKHEND 226
Query: 203 SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGGVLNKEN-AADVKAKFIIE 258
++ A+ GFGNV AAK E G K V +S G + + E + K +++E
Sbjct: 227 TLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLE 283
>pdb|1K89|A Chain A, K89l Mutant Of Glutamate Dehydrogenase
Length = 449
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/237 (32%), Positives = 121/237 (51%), Gaps = 3/237 (1%)
Query: 24 LERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNAL 83
LER ++IP R I+ D+G + G+R+Q + A GP GG+R+ P V+ + L
Sbjct: 48 LER-MVIPERVIEFRVPWEDDNGKVHVNTGYRVQFNGAIGPYLGGLRFAPSVNLSIMKFL 106
Query: 84 AQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDM 143
+K ++ +P GGAKGG +P S E+ R + F +++ IG DVPA D+
Sbjct: 107 GFEQAFKDSLTTLPMGGAKGGSDFDPNGKSDREVMRFCQAFMTELYRHIGPDIDVPAGDL 166
Query: 144 GTNSQTMAWILDEYSKF-HGHSPAVVTGKPIDLGGSLGREAATGLGVFFATEALLAEHGK 202
G ++ + ++ +Y K G V+TGK GGSL R ATG G + EA++
Sbjct: 167 GVGARELGYMYGQYRKIVGGFYNGVLTGKARSFGGSLVRPEATGYGSVYYVEAVMKHEND 226
Query: 203 SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGGVLNKEN-AADVKAKFIIE 258
++ A+ GFGNV AAK E G K V +S G + + E + K +++E
Sbjct: 227 TLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLE 283
>pdb|1AUP|A Chain A, Glutamate Dehydrogenase
Length = 449
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/237 (32%), Positives = 121/237 (51%), Gaps = 3/237 (1%)
Query: 24 LERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNAL 83
LER ++IP R I+ D+G + G+R+Q + A GP GG+R+ P V+ + L
Sbjct: 48 LER-MVIPERVIEFRVPWEDDNGKVHVNTGYRVQFNGAIGPYLGGLRFAPSVNLSIMKFL 106
Query: 84 AQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDM 143
+K ++ +P GGAKGG +P S E+ R + F +++ IG DVPA D+
Sbjct: 107 GFEQAFKDSLTTLPMGGAKGGSDFDPNGKSDREVMRFCQAFMTELYRHIGPDIDVPAGDL 166
Query: 144 GTNSQTMAWILDEYSKF-HGHSPAVVTGKPIDLGGSLGREAATGLGVFFATEALLAEHGK 202
G ++ + ++ +Y K G V+TGK GGSL R ATG G + EA++
Sbjct: 167 GVGAREIGYMYGQYRKIVGGFYNGVLTGKARSFGGSLVRPEATGYGSVYYVEAVMKHEND 226
Query: 203 SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGGVLNKEN-AADVKAKFIIE 258
++ A+ GFGNV AAK E G K V +S G + + E + K +++E
Sbjct: 227 TLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLE 283
>pdb|2BMA|A Chain A, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
pdb|2BMA|B Chain B, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
pdb|2BMA|C Chain C, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
pdb|2BMA|D Chain D, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
pdb|2BMA|E Chain E, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
pdb|2BMA|F Chain F, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
Length = 470
Score = 104 bits (260), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 97/392 (24%), Positives = 157/392 (40%), Gaps = 65/392 (16%)
Query: 31 PFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWK 90
P R I+ D+G FR+Q+++A GP KGG+R+HP V+ V L +K
Sbjct: 77 PERAIQFRVCWLDDNGVQRKNRCFRVQYNSALGPYKGGLRFHPSVNLSIVKFLGFEQIFK 136
Query: 91 TAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTM 150
++ + GG KGG +P+ S +E+ + + F +++ IG DVPA D+G + +
Sbjct: 137 NSLTGLSMGGGKGGSDFDPKGKSDNEILKFCQAFMNELYRHIGPCTDVPAGDIGVGGREI 196
Query: 151 AWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFA 210
++ +Y K +TGK + GGS R ATG G+ + +L +
Sbjct: 197 GYLYGQYKKIVNSFNGTLTGKNVKWGGSNLRVEATGYGLVYFVLEVLKSLNIPVEKQTAV 256
Query: 211 IQGFGNVGSWAAKFFHEHGGKVVAVSDITGGVLNKENAADVKAKFII-----------EA 259
+ G GNV + + KV+ +SD G V +F+I E
Sbjct: 257 VSGSGNVALYCVQKLLHLNVKVLTLSDSNGYVYEPNGFTHENLEFLIDLKEEKKGRIKEY 316
Query: 260 ANHPT---------------------------DPEADEILSKKGVVIL------------ 280
NH + D + ++L K G +++
Sbjct: 317 LNHSSTAKYFPNEKPWGVPCTLAFPCATQNDVDLDQAKLLQKNGCILVGEGANMPSTVDA 376
Query: 281 ------------PDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKT 328
P AN+GGV +S E QN Q W E V+ +LK M + F
Sbjct: 377 INLFKSNNIIYCPSKAANAGGVAISGLEMSQNFQFSHWTRETVDEKLKEIMRNIFIACSE 436
Query: 329 MCQTHNCN---LRMGAFTLGVNRVAQATLLRG 357
+ N L+ GA G +VA++ + +G
Sbjct: 437 NALKYTKNKYDLQAGANIAGFLKVAESYIEQG 468
>pdb|1BXG|B Chain B, Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nad+ And Beta-Phenylpropionate
Length = 356
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 81/277 (29%), Positives = 120/277 (43%), Gaps = 51/277 (18%)
Query: 54 FRIQHDNAR-GPMKGGIR---YHPEVDP-DEVNALAQLMTWKTAVAAIPYGGAKGGIGC- 107
F I+ D+ + GP GG R Y D + LA MT K AV+ +P GG K I
Sbjct: 26 FVIRLDSTQLGPAAGGTRAAQYSQLADALTDAGKLAGAMTLKMAVSNLPMGGGKSVIALP 85
Query: 108 NPR-ELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPA 166
PR + S R+ R+ + I L G + PD+ TNS M L++ ++F
Sbjct: 86 APRHSIDPSTWARILRIHAENIDKLSGNYW--TGPDVNTNSADMD-TLNDTTEF------ 136
Query: 167 VVTGKPIDLGGSLGREAATGLGVFFATEALLAEHG-KSISNMKFAIQGFGNVGSWAAKFF 225
V G+ ++ GG+ T +GVF A +A +A G S+ + +QG G VG A
Sbjct: 137 -VFGRSLERGGAGSSAFTTAVGVFEAMKATVAHRGLGSLDGLTVLVQGLGAVGGSLASLA 195
Query: 226 HEHGGKV--------------------VAVSDI------------TGGVLNKENAADVKA 253
E G ++ VA+ D+ GGV+ E A +
Sbjct: 196 AEAGAQLLVADTDTERVAHAVALGHTAVALEDVLSTPCDVFAPCAMGGVITTEVARTLDC 255
Query: 254 KFIIEAANHP-TDPEADEILSKKGVVILPDIYANSGG 289
+ AAN+ D A +IL +G++ PD AN+GG
Sbjct: 256 SVVAGAANNVIADEAASDILHARGILYAPDFVANAGG 292
>pdb|1BW9|B Chain B, Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nad+ And Phenylpyruvate
Length = 356
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 81/277 (29%), Positives = 120/277 (43%), Gaps = 51/277 (18%)
Query: 54 FRIQHDNAR-GPMKGGIR---YHPEVDP-DEVNALAQLMTWKTAVAAIPYGGAKGGIGC- 107
F I+ D+ + GP GG R Y D + LA MT K AV+ +P GG K I
Sbjct: 26 FVIRLDSTQLGPAAGGTRAAQYSQLADALTDAGKLAGAMTLKMAVSNLPMGGGKSVIALP 85
Query: 108 NPR-ELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPA 166
PR + S R+ R+ + I L G + PD+ TNS M L++ ++F
Sbjct: 86 APRHSIDPSTWARILRIHAENIDKLSGNYW--TGPDVNTNSADMD-TLNDTTEF------ 136
Query: 167 VVTGKPIDLGGSLGREAATGLGVFFATEALLAEHG-KSISNMKFAIQGFGNVGSWAAKFF 225
V G+ ++ GG+ T +GVF A +A +A G S+ + +QG G VG A
Sbjct: 137 -VFGRSLERGGAGSSAFTTAVGVFEAMKATVAHRGLGSLDGLTVLVQGLGAVGGSLASLA 195
Query: 226 HEHGGKV--------------------VAVSDI------------TGGVLNKENAADVKA 253
E G ++ VA+ D+ GGV+ E A +
Sbjct: 196 AEAGAQLLVADTDTERVAHAVALGHTAVALEDVLSTPCDVFAPCAMGGVITTEVARTLDC 255
Query: 254 KFIIEAANHP-TDPEADEILSKKGVVILPDIYANSGG 289
+ AAN+ D A +IL +G++ PD AN+GG
Sbjct: 256 SVVAGAANNVIADEAASDILHARGILYAPDFVANAGG 292
>pdb|1C1D|B Chain B, L-Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nadh And L-Phenylalanine
Length = 355
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 81/277 (29%), Positives = 120/277 (43%), Gaps = 51/277 (18%)
Query: 54 FRIQHDNAR-GPMKGGIR---YHPEVDP-DEVNALAQLMTWKTAVAAIPYGGAKGGIGC- 107
F I+ D+ + GP GG R Y D + LA MT K AV+ +P GG K I
Sbjct: 25 FVIRLDSTQLGPAAGGTRAAQYSQLADALTDAGKLAGAMTLKMAVSNLPMGGGKSVIALP 84
Query: 108 NPR-ELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPA 166
PR + S R+ R+ + I L G + PD+ TNS M L++ ++F
Sbjct: 85 APRHSIDPSTWARILRIHAENIDKLSGNYW--TGPDVNTNSADMD-TLNDTTEF------ 135
Query: 167 VVTGKPIDLGGSLGREAATGLGVFFATEALLAEHG-KSISNMKFAIQGFGNVGSWAAKFF 225
V G+ ++ GG+ T +GVF A +A +A G S+ + +QG G VG A
Sbjct: 136 -VFGRSLERGGAGSSAFTTAVGVFEAMKATVAHRGLGSLDGLTVLVQGLGAVGGSLASLA 194
Query: 226 HEHGGKV--------------------VAVSDI------------TGGVLNKENAADVKA 253
E G ++ VA+ D+ GGV+ E A +
Sbjct: 195 AEAGAQLLVADTDTERVAHAVALGHTAVALEDVLSTPCDVFAPCAMGGVITTEVARTLDC 254
Query: 254 KFIIEAANHP-TDPEADEILSKKGVVILPDIYANSGG 289
+ AAN+ D A +IL +G++ PD AN+GG
Sbjct: 255 SVVAGAANNVIADEAASDILHARGILYAPDFVANAGG 291
>pdb|1BXG|A Chain A, Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nad+ And Beta-Phenylpropionate
Length = 356
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 81/277 (29%), Positives = 120/277 (43%), Gaps = 51/277 (18%)
Query: 54 FRIQHDNAR-GPMKGGIR---YHPEVDP-DEVNALAQLMTWKTAVAAIPYGGAKGGIGC- 107
F I+ D+ + GP GG R Y D + LA MT K AV+ +P GG K I
Sbjct: 26 FVIRLDSTQLGPAAGGTRAAQYSQLADALTDAGKLAGAMTLKMAVSNLPMGGGKSVIALP 85
Query: 108 NPR-ELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPA 166
PR + S R+ R+ + I L G + PD+ TNS M L++ ++F
Sbjct: 86 APRHSIDPSTWARILRIHAENIDKLSGNYW--TGPDVNTNSADMD-TLNDTTEF------ 136
Query: 167 VVTGKPIDLGGSLGREAATGLGVFFATEALLAEHG-KSISNMKFAIQGFGNVGSWAAKFF 225
V G+ ++ GG+ T +GVF A +A +A G S+ + +QG G VG A
Sbjct: 137 -VFGRSLERGGAGSSAFTTAVGVFEAMKATVAHRGLGSLDGLTVLVQGLGAVGGSLASLA 195
Query: 226 HEHGGKV--------------------VAVSDI------------TGGVLNKENAADVKA 253
E G ++ VA+ D+ GGV+ E A +
Sbjct: 196 AEAGAQLLVADTDTERVAHAVALGHTAVALEDVLSTPCDVFAPCAMGGVITTEVARTLDC 255
Query: 254 KFIIEAANHP-TDPEADEILSKKGVVILPDIYANSGG 289
+ AAN+ D A +IL +G++ PD AN+GG
Sbjct: 256 SVVAGAANNVIADEAASDILHARGILYAPDFVANAGG 292
>pdb|1C1X|B Chain B, L-Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nad+ And L-3-Phenyllactate
Length = 355
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 81/277 (29%), Positives = 120/277 (43%), Gaps = 51/277 (18%)
Query: 54 FRIQHDNAR-GPMKGGIR---YHPEVDP-DEVNALAQLMTWKTAVAAIPYGGAKGGIGC- 107
F I+ D+ + GP GG R Y D + LA MT K AV+ +P GG K I
Sbjct: 25 FVIRLDSTQLGPAAGGTRAAQYSQLADALTDAGKLAGAMTLKMAVSNLPMGGGKSVIALP 84
Query: 108 NPR-ELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPA 166
PR + S R+ R+ + I L G + PD+ TNS M L++ ++F
Sbjct: 85 APRHSIDPSTWARILRIHAENIDKLSGNYW--TGPDVNTNSADMD-TLNDTTEF------ 135
Query: 167 VVTGKPIDLGGSLGREAATGLGVFFATEALLAEHG-KSISNMKFAIQGFGNVGSWAAKFF 225
V G+ ++ GG+ T +GVF A +A +A G S+ + +QG G VG A
Sbjct: 136 -VFGRSLERGGAGSSAFTTAVGVFEAMKATVAHRGLGSLDGLTVLVQGLGAVGGSLASLA 194
Query: 226 HEHGGKV--------------------VAVSDI------------TGGVLNKENAADVKA 253
E G ++ VA+ D+ GGV+ E A +
Sbjct: 195 AEAGAQLLVADTDTERVAHAVALGHTAVALEDVLSTPCDVFAPCAMGGVITTEVARTLDC 254
Query: 254 KFIIEAANHP-TDPEADEILSKKGVVILPDIYANSGG 289
+ AAN+ D A +IL +G++ PD AN+GG
Sbjct: 255 SVVAGAANNVIADEAASDILHARGILYAPDFVANAGG 291
>pdb|1BW9|A Chain A, Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nad+ And Phenylpyruvate
Length = 356
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 81/277 (29%), Positives = 120/277 (43%), Gaps = 51/277 (18%)
Query: 54 FRIQHDNAR-GPMKGGIR---YHPEVDP-DEVNALAQLMTWKTAVAAIPYGGAKGGIGC- 107
F I+ D+ + GP GG R Y D + LA MT K AV+ +P GG K I
Sbjct: 26 FVIRLDSTQLGPAAGGTRAAQYSNLADALTDAGKLAGAMTLKMAVSNLPMGGGKSVIALP 85
Query: 108 NPR-ELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPA 166
PR + S R+ R+ + I L G + PD+ TNS M L++ ++F
Sbjct: 86 APRHSIDPSTWARILRIHAENIDKLSGNYW--TGPDVNTNSADMD-TLNDTTEF------ 136
Query: 167 VVTGKPIDLGGSLGREAATGLGVFFATEALLAEHG-KSISNMKFAIQGFGNVGSWAAKFF 225
V G+ ++ GG+ T +GVF A +A +A G S+ + +QG G VG A
Sbjct: 137 -VFGRSLERGGAGSSAFTTAVGVFEAMKATVAHRGLGSLDGLTVLVQGLGAVGGSLASLA 195
Query: 226 HEHGGKV--------------------VAVSDI------------TGGVLNKENAADVKA 253
E G ++ VA+ D+ GGV+ E A +
Sbjct: 196 AEAGAQLLVADTDTERVAHAVALGHTAVALEDVLSTPCDVFAPCAMGGVITTEVARTLDC 255
Query: 254 KFIIEAANHP-TDPEADEILSKKGVVILPDIYANSGG 289
+ AAN+ D A +IL +G++ PD AN+GG
Sbjct: 256 SVVAGAANNVIADEAASDILHARGILYAPDFVANAGG 292
>pdb|1C1X|A Chain A, L-Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nad+ And L-3-Phenyllactate
Length = 355
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 81/277 (29%), Positives = 120/277 (43%), Gaps = 51/277 (18%)
Query: 54 FRIQHDNAR-GPMKGGIR---YHPEVDP-DEVNALAQLMTWKTAVAAIPYGGAKGGIGC- 107
F I+ D+ + GP GG R Y D + LA MT K AV+ +P GG K I
Sbjct: 25 FVIRLDSTQLGPAAGGTRAAQYSNLADALTDAGKLAGAMTLKMAVSNLPMGGGKSVIALP 84
Query: 108 NPR-ELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPA 166
PR + S R+ R+ + I L G + PD+ TNS M L++ ++F
Sbjct: 85 APRHSIDPSTWARILRIHAENIDKLSGNYW--TGPDVNTNSADMD-TLNDTTEF------ 135
Query: 167 VVTGKPIDLGGSLGREAATGLGVFFATEALLAEHG-KSISNMKFAIQGFGNVGSWAAKFF 225
V G+ ++ GG+ T +GVF A +A +A G S+ + +QG G VG A
Sbjct: 136 -VFGRSLERGGAGSSAFTTAVGVFEAMKATVAHRGLGSLDGLTVLVQGLGAVGGSLASLA 194
Query: 226 HEHGGKV--------------------VAVSDI------------TGGVLNKENAADVKA 253
E G ++ VA+ D+ GGV+ E A +
Sbjct: 195 AEAGAQLLVADTDTERVAHAVALGHTAVALEDVLSTPCDVFAPCAMGGVITTEVARTLDC 254
Query: 254 KFIIEAANHP-TDPEADEILSKKGVVILPDIYANSGG 289
+ AAN+ D A +IL +G++ PD AN+GG
Sbjct: 255 SVVAGAANNVIADEAASDILHARGILYAPDFVANAGG 291
>pdb|1C1D|A Chain A, L-Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nadh And L-Phenylalanine
Length = 355
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 81/277 (29%), Positives = 120/277 (43%), Gaps = 51/277 (18%)
Query: 54 FRIQHDNAR-GPMKGGIR---YHPEVDP-DEVNALAQLMTWKTAVAAIPYGGAKGGIGC- 107
F I+ D+ + GP GG R Y D + LA MT K AV+ +P GG K I
Sbjct: 25 FVIRLDSTQLGPAAGGTRAAQYSNLADALTDAGKLAGAMTLKMAVSNLPMGGGKSVIALP 84
Query: 108 NPR-ELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPA 166
PR + S R+ R+ + I L G + PD+ TNS M L++ ++F
Sbjct: 85 APRHSIDPSTWARILRIHAENIDKLSGNYW--TGPDVNTNSADMD-TLNDTTEF------ 135
Query: 167 VVTGKPIDLGGSLGREAATGLGVFFATEALLAEHG-KSISNMKFAIQGFGNVGSWAAKFF 225
V G+ ++ GG+ T +GVF A +A +A G S+ + +QG G VG A
Sbjct: 136 -VFGRSLERGGAGSSAFTTAVGVFEAMKATVAHRGLGSLDGLTVLVQGLGAVGGSLASLA 194
Query: 226 HEHGGKV--------------------VAVSDI------------TGGVLNKENAADVKA 253
E G ++ VA+ D+ GGV+ E A +
Sbjct: 195 AEAGAQLLVADTDTERVAHAVALGHTAVALEDVLSTPCDVFAPCAMGGVITTEVARTLDC 254
Query: 254 KFIIEAANHP-TDPEADEILSKKGVVILPDIYANSGG 289
+ AAN+ D A +IL +G++ PD AN+GG
Sbjct: 255 SVVAGAANNVIADEAASDILHARGILYAPDFVANAGG 291
>pdb|3VPX|A Chain A, Crystal Structure Of Leucine Dehydrogenase From A
Psychrophilic Bacterium Sporosarcina Psychrophila.
pdb|3VPX|B Chain B, Crystal Structure Of Leucine Dehydrogenase From A
Psychrophilic Bacterium Sporosarcina Psychrophila
Length = 364
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 75/274 (27%), Positives = 112/274 (40%), Gaps = 55/274 (20%)
Query: 58 HDNARGPMKGGIR---YHPEVDP-DEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELS 113
HD GP GG R Y E + ++ LA+ MT+K A A + GG K I NP+
Sbjct: 32 HDTTLGPALGGTRMWTYASEEEAIEDALRLARGMTYKNAAAGLNLGGGKTVIIGNPK--- 88
Query: 114 MSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPI 173
+ + + R F + I L G R + A D+GT M I E VTG
Sbjct: 89 TDKNDEMFRAFGRYIEGLNG--RYITAEDVGTTEADMDLINLETD--------YVTGTSA 138
Query: 174 DLGGSLGREAATGLGVFFATEALLAEH--GKSISNMKFAIQGFGNVGSWAAKFFHEHGGK 231
G S T G+++ +A E S++ A+QG GNV ++ HE G K
Sbjct: 139 GAGSSGNPSPVTAYGIYYGMKAAAKEAFGDDSLAGKTVAVQGVGNVAYALCEYLHEEGAK 198
Query: 232 VVAVSDIT----------------------------------GGVLNKENAADVKAKFII 257
++ ++DI G ++N E +KAK I
Sbjct: 199 LI-ITDINEEAVQRAVDAFGATAVGINEIYSQEADIFAPCALGAIINDETIPQLKAKVIA 257
Query: 258 EAANHP-TDPEADEILSKKGVVILPDIYANSGGV 290
+AN+ + +++ + G+V PD NSGGV
Sbjct: 258 GSANNQLKETRHGDLIHEMGIVYAPDYVINSGGV 291
>pdb|1LEH|A Chain A, Leucine Dehydrogenase From Bacillus Sphaericus
pdb|1LEH|B Chain B, Leucine Dehydrogenase From Bacillus Sphaericus
Length = 364
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 106/274 (38%), Gaps = 55/274 (20%)
Query: 58 HDNARGPMKGGIR---YHPEVDP-DEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELS 113
HD GP GG R Y+ E + ++ LA+ MT+K A A + GG K I +P
Sbjct: 32 HDTTLGPALGGARMWTYNAEEEAIEDALRLARGMTYKNAAAGLNLGGGKTVIIGDPFADK 91
Query: 114 MSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPI 173
++ R F Q ++ R + A D+GT M I E G SPA
Sbjct: 92 NEDMFRALGRFIQGLN-----GRYITAEDVGTTVDDMDLIHQETDYVTGISPA------- 139
Query: 174 DLGGSLGREAATGLGVFFATEALLAEH--GKSISNMKFAIQGFGNVGSWAAKFFHEHGGK 231
G S T GV+ +A E S+ + ++QG GNV K + G K
Sbjct: 140 -FGSSGNPSPVTAYGVYRGMKAAAKEAFGSDSLEGLAVSVQGLGNVAKALCKKLNTEGAK 198
Query: 232 VVAVSDIT----------------------------------GGVLNKENAADVKAKFII 257
+V V+D+ G VLN +KAK I
Sbjct: 199 LV-VTDVNKAAVSAAVAEEGADAVAPNAIYGVTCDIFAPCALGAVLNDFTIPQLKAKVIA 257
Query: 258 EAA-NHPTDPEADEILSKKGVVILPDIYANSGGV 290
+A N DP + L + G+V PD N+GGV
Sbjct: 258 GSADNQLKDPRHGKYLHELGIVYAPDYVINAGGV 291
>pdb|3HJA|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
pdb|3HJA|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
pdb|3HJA|C Chain C, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
pdb|3HJA|D Chain D, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
Length = 356
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 206 NMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239
+MK AI GFG +G K E G +VA++D+T
Sbjct: 21 SMKLAINGFGRIGRNVFKIAFERGIDIVAINDLT 54
>pdb|1VC2|A Chain A, Crystal Structure Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Thermus Thermophilus Hb8
Length = 331
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239
MK I GFG +G + HE G +V ++D+T
Sbjct: 1 MKVGINGFGRIGRQVFRILHERGVEVALINDLT 33
>pdb|1XDW|A Chain A, Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase From
Acidaminococcus Fermentans
Length = 331
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 20/112 (17%)
Query: 191 FATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGGVLNKENAAD 250
F +A + K + N + G G +G AA+ FH G V+ E+ +
Sbjct: 133 FKVDAFM--FSKEVRNCTVGVVGLGRIGRVAAQIFHGMGATVIG-----------EDVFE 179
Query: 251 VKAKFIIEAANHPTDPEADEILSKKGVVIL--PDIYANSGGVTVSYFEWVQN 300
+K IE ++ T DE+L K ++ + P I N VT + + +++
Sbjct: 180 IKG---IE--DYCTQVSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKD 226
>pdb|3AYX|A Chain A, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In An H2-Reduced Condition
pdb|3AYX|C Chain C, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In An H2-Reduced Condition
pdb|3AYY|A Chain A, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In A Ferricyanide-Oxidized
Condition
pdb|3AYY|C Chain C, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In A Ferricyanide-Oxidized
Condition
pdb|3AYZ|A Chain A, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In An Air-Oxidized Condition
pdb|3AYZ|C Chain C, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In An Air-Oxidized Condition
Length = 596
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 29/68 (42%)
Query: 175 LGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVA 234
LG ++GR A L + + +L + + ISN+K N W + EH V
Sbjct: 459 LGSTIGRTLARALESEYCGDMMLDDFNQLISNIKNGDSSTANTDKWDPSSWPEHAKGVGT 518
Query: 235 VSDITGGV 242
V+ G +
Sbjct: 519 VAAPRGAL 526
>pdb|1CER|O Chain O, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|P Chain P, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|Q Chain Q, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|R Chain R, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|A Chain A, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|B Chain B, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|C Chain C, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|D Chain D, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
Length = 331
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239
MK I GFG +G + H G +V ++D+T
Sbjct: 1 MKVGINGFGRIGRQVFRILHSRGVEVALINDLT 33
>pdb|2G82|O Chain O, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|P Chain P, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|Q Chain Q, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|R Chain R, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|A Chain A, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|B Chain B, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|C Chain C, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|D Chain D, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
Length = 331
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239
MK I GFG +G + H G +V ++D+T
Sbjct: 1 MKVGINGFGRIGRQVFRILHSRGVEVALINDLT 33
>pdb|2VYN|D Chain D, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|D Chain D, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
Length = 334
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSD 237
+K I GFG +G + E G +VVAV+D
Sbjct: 2 VKVGINGFGRIGRLVLRVCMEKGVRVVAVND 32
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,159,879
Number of Sequences: 62578
Number of extensions: 476531
Number of successful extensions: 1300
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1164
Number of HSP's gapped (non-prelim): 79
length of query: 359
length of database: 14,973,337
effective HSP length: 100
effective length of query: 259
effective length of database: 8,715,537
effective search space: 2257324083
effective search space used: 2257324083
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)