Query 018214
Match_columns 359
No_of_seqs 179 out of 1574
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 07:06:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018214.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018214hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02477 glutamate dehydrogena 100.0 8E-118 2E-122 891.9 42.9 359 1-359 1-410 (410)
2 COG0334 GdhA Glutamate dehydro 100.0 4E-116 8E-121 867.7 40.2 357 2-358 2-410 (411)
3 PRK14030 glutamate dehydrogena 100.0 4E-114 9E-119 869.2 41.4 357 2-358 19-444 (445)
4 PRK09414 glutamate dehydrogena 100.0 1E-110 3E-115 846.2 40.9 357 2-358 23-444 (445)
5 PRK14031 glutamate dehydrogena 100.0 2E-108 4E-113 828.8 40.4 356 3-358 20-443 (444)
6 PTZ00079 NADP-specific glutama 100.0 1E-107 3E-112 821.4 41.8 355 4-358 32-453 (454)
7 KOG2250 Glutamate/leucine/phen 100.0 7.2E-91 1.6E-95 692.2 29.7 336 23-358 66-483 (514)
8 PTZ00324 glutamate dehydrogena 100.0 1.6E-70 3.4E-75 588.2 34.0 316 17-347 458-912 (1002)
9 cd05313 NAD_bind_2_Glu_DH NAD( 100.0 2.3E-58 5E-63 436.4 21.6 190 169-358 1-254 (254)
10 PF00208 ELFV_dehydrog: Glutam 100.0 5.3E-51 1.2E-55 385.2 18.0 182 176-357 1-244 (244)
11 cd01076 NAD_bind_1_Glu_DH NAD( 100.0 7.7E-48 1.7E-52 360.2 19.8 175 176-350 1-226 (227)
12 PF02812 ELFV_dehydrog_N: Glu/ 100.0 7E-48 1.5E-52 332.0 12.8 130 31-160 1-130 (131)
13 cd05211 NAD_bind_Glu_Leu_Phe_V 100.0 4.1E-47 9E-52 353.1 18.1 167 184-350 1-217 (217)
14 cd01075 NAD_bind_Leu_Phe_Val_D 100.0 2E-39 4.3E-44 297.9 18.7 161 182-350 2-199 (200)
15 smart00839 ELFV_dehydrog Gluta 99.9 7.8E-26 1.7E-30 187.2 8.6 91 240-333 12-102 (102)
16 PF05088 Bac_GDH: Bacterial NA 99.9 7.9E-24 1.7E-28 238.0 23.9 262 18-297 697-1097(1528)
17 COG2902 NAD-specific glutamate 99.9 8.6E-24 1.9E-28 230.3 20.7 262 18-299 759-1161(1592)
18 cd05191 NAD_bind_amino_acid_DH 98.3 5.3E-06 1.1E-10 66.1 8.4 55 184-238 1-55 (86)
19 PF00670 AdoHcyase_NAD: S-aden 97.7 0.00013 2.7E-09 65.5 7.3 96 187-290 3-112 (162)
20 PRK06392 homoserine dehydrogen 97.6 0.00021 4.5E-09 70.9 8.3 87 208-297 2-127 (326)
21 PRK08374 homoserine dehydrogen 97.5 0.0002 4.3E-09 71.2 7.2 87 207-296 3-132 (336)
22 PRK15438 erythronate-4-phospha 97.0 0.017 3.6E-07 58.6 14.6 104 183-287 93-237 (378)
23 PRK08306 dipicolinate synthase 97.0 0.0023 5E-08 62.5 8.1 103 182-290 131-247 (296)
24 TIGR02853 spore_dpaA dipicolin 97.0 0.0039 8.5E-08 60.7 9.6 104 182-291 130-247 (287)
25 cd00401 AdoHcyase S-adenosyl-L 96.9 0.0021 4.5E-08 65.8 6.7 89 185-278 184-285 (413)
26 cd01065 NAD_bind_Shikimate_DH 96.7 0.023 5.1E-07 48.9 10.9 48 191-239 4-52 (155)
27 cd01080 NAD_bind_m-THF_DH_Cycl 96.6 0.013 2.8E-07 52.8 9.3 78 180-267 22-104 (168)
28 PRK05476 S-adenosyl-L-homocyst 96.6 0.0061 1.3E-07 62.6 7.9 55 181-239 190-244 (425)
29 PF02826 2-Hacid_dh_C: D-isome 96.5 0.0094 2E-07 53.6 7.7 38 201-239 31-68 (178)
30 PRK14175 bifunctional 5,10-met 96.4 0.012 2.5E-07 57.5 8.1 91 182-287 138-233 (286)
31 PRK14176 bifunctional 5,10-met 96.4 0.015 3.2E-07 56.8 8.7 91 182-287 144-239 (287)
32 TIGR00936 ahcY adenosylhomocys 96.3 0.0075 1.6E-07 61.6 6.4 52 184-239 176-227 (406)
33 PRK14191 bifunctional 5,10-met 96.3 0.016 3.5E-07 56.5 8.3 90 182-286 137-231 (285)
34 PTZ00075 Adenosylhomocysteinas 96.3 0.009 2E-07 62.0 7.0 53 186-239 233-286 (476)
35 PRK14192 bifunctional 5,10-met 96.3 0.014 3.1E-07 56.8 7.9 91 182-287 139-234 (283)
36 PRK09599 6-phosphogluconate de 96.2 0.072 1.6E-06 51.7 12.5 81 208-291 2-125 (301)
37 cd05212 NAD_bind_m-THF_DH_Cycl 96.2 0.026 5.6E-07 49.4 8.5 91 183-286 9-102 (140)
38 PRK08223 hypothetical protein; 96.2 0.0079 1.7E-07 58.7 5.7 79 204-282 25-150 (287)
39 TIGR01470 cysG_Nterm siroheme 96.2 0.016 3.4E-07 53.8 7.2 77 202-279 5-97 (205)
40 COG0111 SerA Phosphoglycerate 96.1 0.017 3.7E-07 57.3 7.7 77 201-278 137-253 (324)
41 PRK14194 bifunctional 5,10-met 96.1 0.02 4.3E-07 56.3 8.0 90 182-286 139-233 (301)
42 COG0373 HemA Glutamyl-tRNA red 96.1 0.12 2.6E-06 53.0 13.6 161 189-353 161-358 (414)
43 PLN02494 adenosylhomocysteinas 96.1 0.011 2.3E-07 61.5 5.9 51 185-239 236-286 (477)
44 PF02882 THF_DHG_CYH_C: Tetrah 96.0 0.027 5.8E-07 50.5 7.8 73 181-263 15-90 (160)
45 PRK08410 2-hydroxyacid dehydro 96.0 0.072 1.6E-06 52.4 11.4 83 202-285 141-259 (311)
46 PRK00257 erythronate-4-phospha 96.0 0.016 3.4E-07 58.8 6.8 100 184-284 94-234 (381)
47 PF13241 NAD_binding_7: Putati 95.9 0.011 2.3E-07 48.6 4.3 78 202-279 3-88 (103)
48 PRK13243 glyoxylate reductase; 95.9 0.086 1.9E-06 52.3 11.3 37 201-238 145-181 (333)
49 PRK10792 bifunctional 5,10-met 95.8 0.032 6.9E-07 54.5 7.9 75 182-266 139-218 (285)
50 cd00757 ThiF_MoeB_HesA_family 95.8 0.015 3.3E-07 54.4 5.6 78 204-281 19-141 (228)
51 TIGR02355 moeB molybdopterin s 95.8 0.015 3.2E-07 55.2 5.5 78 204-281 22-144 (240)
52 PRK12475 thiamine/molybdopteri 95.8 0.016 3.5E-07 57.7 6.1 36 204-239 22-57 (338)
53 cd01078 NAD_bind_H4MPT_DH NADP 95.8 0.036 7.8E-07 50.2 7.6 53 183-235 5-58 (194)
54 PRK05690 molybdopterin biosynt 95.8 0.02 4.3E-07 54.4 6.1 78 204-281 30-152 (245)
55 PRK14177 bifunctional 5,10-met 95.8 0.05 1.1E-06 53.1 8.9 91 182-287 139-234 (284)
56 PRK14179 bifunctional 5,10-met 95.7 0.042 9.1E-07 53.6 8.3 90 182-286 138-232 (284)
57 PF00899 ThiF: ThiF family; I 95.7 0.0087 1.9E-07 51.2 3.1 34 206-239 2-35 (135)
58 PRK14189 bifunctional 5,10-met 95.7 0.044 9.5E-07 53.5 8.3 75 182-266 138-217 (285)
59 PF03446 NAD_binding_2: NAD bi 95.7 0.016 3.6E-07 51.2 4.9 77 207-284 2-120 (163)
60 TIGR02356 adenyl_thiF thiazole 95.7 0.023 4.9E-07 52.4 5.9 36 204-239 19-54 (202)
61 PRK08644 thiamine biosynthesis 95.6 0.02 4.4E-07 53.2 5.5 78 204-281 26-148 (212)
62 PRK06153 hypothetical protein; 95.6 0.012 2.6E-07 59.7 4.1 77 204-280 174-295 (393)
63 PRK06718 precorrin-2 dehydroge 95.6 0.038 8.2E-07 51.1 6.9 76 202-278 6-96 (202)
64 PRK15116 sulfur acceptor prote 95.5 0.026 5.7E-07 54.6 5.9 36 204-239 28-63 (268)
65 PRK07877 hypothetical protein; 95.5 0.023 4.9E-07 62.0 5.9 84 204-291 105-234 (722)
66 COG1023 Gnd Predicted 6-phosph 95.5 0.14 3.1E-06 49.0 10.4 134 208-344 2-209 (300)
67 PRK06932 glycerate dehydrogena 95.4 0.17 3.7E-06 49.8 11.5 82 203-284 144-260 (314)
68 PRK07574 formate dehydrogenase 95.4 0.13 2.8E-06 52.3 10.7 35 203-238 189-223 (385)
69 PRK14851 hypothetical protein; 95.4 0.036 7.8E-07 60.2 6.9 79 204-282 41-166 (679)
70 PRK14172 bifunctional 5,10-met 95.3 0.063 1.4E-06 52.3 7.9 76 182-267 138-218 (278)
71 cd00755 YgdL_like Family of ac 95.3 0.029 6.2E-07 53.1 5.4 36 204-239 9-44 (231)
72 PRK00045 hemA glutamyl-tRNA re 95.3 0.52 1.1E-05 48.2 15.0 152 203-354 179-365 (423)
73 PRK06270 homoserine dehydrogen 95.3 0.057 1.2E-06 53.8 7.7 39 207-245 3-51 (341)
74 PRK14183 bifunctional 5,10-met 95.3 0.065 1.4E-06 52.2 7.8 77 181-267 136-217 (281)
75 PRK14852 hypothetical protein; 95.2 0.038 8.3E-07 61.9 6.8 81 204-284 330-457 (989)
76 TIGR02354 thiF_fam2 thiamine b 95.2 0.041 8.9E-07 50.8 6.0 36 204-239 19-54 (200)
77 PF03447 NAD_binding_3: Homose 95.2 0.018 3.9E-07 47.9 3.3 75 213-291 1-95 (117)
78 PRK14190 bifunctional 5,10-met 95.2 0.071 1.5E-06 52.0 7.9 76 182-267 138-218 (284)
79 PLN02516 methylenetetrahydrofo 95.2 0.082 1.8E-06 52.0 8.3 72 182-263 147-221 (299)
80 PF01488 Shikimate_DH: Shikima 95.2 0.027 5.8E-07 48.5 4.4 63 202-264 8-87 (135)
81 PRK01438 murD UDP-N-acetylmura 95.2 0.09 2E-06 54.2 9.0 39 199-238 9-47 (480)
82 PRK06719 precorrin-2 dehydroge 95.2 0.08 1.7E-06 47.0 7.5 34 202-235 9-42 (157)
83 PRK14106 murD UDP-N-acetylmura 95.2 0.068 1.5E-06 54.4 8.0 36 203-239 2-37 (450)
84 COG0499 SAM1 S-adenosylhomocys 95.2 0.035 7.6E-07 55.7 5.6 54 182-239 188-241 (420)
85 PRK14178 bifunctional 5,10-met 95.1 0.088 1.9E-06 51.3 8.1 90 182-286 132-226 (279)
86 PRK08328 hypothetical protein; 95.1 0.041 9E-07 51.8 5.7 36 204-239 25-60 (231)
87 PRK11790 D-3-phosphoglycerate 95.1 0.26 5.5E-06 50.5 11.8 35 202-236 147-181 (409)
88 PRK14170 bifunctional 5,10-met 95.1 0.084 1.8E-06 51.6 7.8 90 182-286 137-231 (284)
89 PRK15409 bifunctional glyoxyla 95.0 0.36 7.9E-06 47.8 12.5 35 201-235 140-175 (323)
90 PRK14169 bifunctional 5,10-met 95.0 0.1 2.2E-06 51.0 8.2 77 181-267 135-216 (282)
91 COG1064 AdhP Zn-dependent alco 95.0 0.049 1.1E-06 54.4 6.2 77 205-282 166-259 (339)
92 PLN03139 formate dehydrogenase 95.0 0.22 4.7E-06 50.7 11.0 37 202-239 195-231 (386)
93 COG1648 CysG Siroheme synthase 95.0 0.074 1.6E-06 49.7 7.0 78 202-279 8-100 (210)
94 cd05213 NAD_bind_Glutamyl_tRNA 95.0 0.12 2.7E-06 50.6 8.9 73 192-265 165-251 (311)
95 PRK14180 bifunctional 5,10-met 94.9 0.098 2.1E-06 51.0 8.0 76 182-267 138-218 (282)
96 PLN02700 homoserine dehydrogen 94.9 0.072 1.6E-06 54.0 7.2 88 207-297 4-151 (377)
97 PRK14186 bifunctional 5,10-met 94.9 0.11 2.4E-06 51.0 8.2 76 182-267 138-218 (297)
98 PRK14166 bifunctional 5,10-met 94.9 0.11 2.3E-06 50.8 7.9 76 182-267 137-217 (282)
99 PRK07688 thiamine/molybdopteri 94.9 0.045 9.8E-07 54.6 5.6 36 204-239 22-57 (339)
100 PRK03369 murD UDP-N-acetylmura 94.8 0.083 1.8E-06 55.0 7.5 79 204-283 10-101 (488)
101 PRK06487 glycerate dehydrogena 94.8 0.13 2.8E-06 50.8 8.5 82 203-284 145-260 (317)
102 PRK14173 bifunctional 5,10-met 94.8 0.12 2.7E-06 50.5 8.1 76 182-267 135-215 (287)
103 TIGR01202 bchC 2-desacetyl-2-h 94.8 0.078 1.7E-06 51.3 6.8 79 204-282 143-231 (308)
104 PRK14184 bifunctional 5,10-met 94.7 0.12 2.6E-06 50.6 7.9 90 182-286 137-235 (286)
105 KOG1201 Hydroxysteroid 17-beta 94.7 0.18 3.9E-06 49.5 9.1 104 202-317 34-144 (300)
106 PRK14174 bifunctional 5,10-met 94.7 0.14 3.1E-06 50.2 8.5 72 182-263 139-217 (295)
107 PLN02616 tetrahydrofolate dehy 94.7 0.16 3.4E-06 51.2 8.9 77 181-267 210-291 (364)
108 cd05311 NAD_bind_2_malic_enz N 94.7 0.094 2E-06 49.3 7.0 55 185-239 4-60 (226)
109 TIGR01327 PGDH D-3-phosphoglyc 94.7 0.37 8E-06 50.8 12.1 125 201-327 133-301 (525)
110 PF01262 AlaDh_PNT_C: Alanine 94.7 0.051 1.1E-06 48.4 4.9 85 204-291 18-146 (168)
111 cd01483 E1_enzyme_family Super 94.6 0.073 1.6E-06 45.7 5.6 32 208-239 1-32 (143)
112 PRK14171 bifunctional 5,10-met 94.6 0.13 2.9E-06 50.3 7.9 76 182-267 139-219 (288)
113 PRK14982 acyl-ACP reductase; P 94.6 0.15 3.3E-06 51.0 8.6 55 184-239 133-190 (340)
114 PRK09310 aroDE bifunctional 3- 94.6 0.26 5.6E-06 51.4 10.6 51 184-239 314-364 (477)
115 COG0460 ThrA Homoserine dehydr 94.6 0.23 5.1E-06 49.5 9.7 126 206-335 3-197 (333)
116 PLN02928 oxidoreductase family 94.5 0.11 2.3E-06 52.0 7.3 34 202-235 155-188 (347)
117 PRK14187 bifunctional 5,10-met 94.5 0.16 3.4E-06 49.9 8.2 76 182-267 140-220 (294)
118 TIGR01035 hemA glutamyl-tRNA r 94.5 1.5 3.2E-05 44.9 15.7 60 203-263 177-251 (417)
119 PRK14182 bifunctional 5,10-met 94.5 0.16 3.6E-06 49.5 8.2 76 182-267 137-217 (282)
120 PRK05597 molybdopterin biosynt 94.4 0.066 1.4E-06 53.6 5.6 78 204-281 26-148 (355)
121 COG0569 TrkA K+ transport syst 94.3 0.063 1.4E-06 50.4 4.9 75 207-288 1-75 (225)
122 PRK09424 pntA NAD(P) transhydr 94.3 0.19 4.1E-06 52.9 8.9 83 204-289 163-290 (509)
123 PF01113 DapB_N: Dihydrodipico 94.3 0.045 9.7E-07 46.5 3.5 73 208-280 2-95 (124)
124 PRK14188 bifunctional 5,10-met 94.3 0.12 2.7E-06 50.7 7.0 72 182-263 138-212 (296)
125 PRK02472 murD UDP-N-acetylmura 94.3 0.16 3.5E-06 51.7 8.1 36 203-239 2-37 (447)
126 PRK04690 murD UDP-N-acetylmura 94.2 0.13 2.8E-06 53.3 7.3 35 204-239 6-40 (468)
127 PRK07878 molybdopterin biosynt 94.1 0.087 1.9E-06 53.5 5.6 36 204-239 40-75 (392)
128 PRK05600 thiamine biosynthesis 94.0 0.087 1.9E-06 53.2 5.5 77 204-280 39-160 (370)
129 PRK14181 bifunctional 5,10-met 94.0 0.23 5.1E-06 48.6 8.2 76 182-267 133-217 (287)
130 PLN02897 tetrahydrofolate dehy 94.0 0.19 4.1E-06 50.3 7.6 77 181-267 193-274 (345)
131 PRK14167 bifunctional 5,10-met 93.7 0.27 5.8E-06 48.4 8.1 76 182-267 137-221 (297)
132 cd01487 E1_ThiF_like E1_ThiF_l 93.7 0.12 2.6E-06 46.6 5.3 32 208-239 1-32 (174)
133 PRK06436 glycerate dehydrogena 93.7 0.1 2.2E-06 51.3 5.2 35 202-236 118-152 (303)
134 PRK14193 bifunctional 5,10-met 93.7 0.28 6E-06 48.0 8.1 76 182-267 138-220 (284)
135 PLN03129 NADP-dependent malic 93.6 2.2 4.9E-05 45.6 15.3 148 113-278 244-432 (581)
136 PRK13581 D-3-phosphoglycerate 93.6 1 2.2E-05 47.5 12.7 36 201-236 135-170 (526)
137 TIGR01532 E4PD_g-proteo D-eryt 93.6 0.28 6E-06 48.8 8.0 69 208-276 1-113 (325)
138 PRK07232 bifunctional malic en 93.5 1.1 2.3E-05 49.5 13.1 97 138-239 102-220 (752)
139 COG1179 Dinucleotide-utilizing 93.5 0.049 1.1E-06 52.0 2.5 36 204-239 28-63 (263)
140 PRK12480 D-lactate dehydrogena 93.5 0.11 2.3E-06 51.7 5.0 37 202-239 142-178 (330)
141 COG1052 LdhA Lactate dehydroge 93.5 0.94 2E-05 45.0 11.6 85 201-286 141-265 (324)
142 PRK07411 hypothetical protein; 93.5 0.12 2.7E-06 52.4 5.5 36 204-239 36-71 (390)
143 PRK15469 ghrA bifunctional gly 93.5 0.12 2.5E-06 51.1 5.1 34 203-236 133-166 (312)
144 PRK05472 redox-sensing transcr 93.4 0.3 6.4E-06 45.2 7.5 53 186-239 65-119 (213)
145 PF10727 Rossmann-like: Rossma 93.3 0.068 1.5E-06 46.1 2.8 33 206-238 10-42 (127)
146 PRK08762 molybdopterin biosynt 93.2 0.14 3.1E-06 51.5 5.4 36 204-239 133-168 (376)
147 PRK14185 bifunctional 5,10-met 93.2 0.37 8E-06 47.3 8.0 76 182-267 137-221 (293)
148 PRK01710 murD UDP-N-acetylmura 93.1 0.34 7.5E-06 49.8 8.2 35 204-239 12-46 (458)
149 PLN02653 GDP-mannose 4,6-dehyd 93.1 1.2 2.6E-05 43.4 11.5 35 203-237 3-38 (340)
150 PRK14168 bifunctional 5,10-met 93.0 0.38 8.2E-06 47.3 7.9 76 182-267 141-225 (297)
151 TIGR00561 pntA NAD(P) transhyd 93.0 0.3 6.6E-06 51.4 7.6 84 204-290 162-290 (511)
152 PRK00141 murD UDP-N-acetylmura 92.9 0.36 7.9E-06 50.0 8.0 35 204-239 13-47 (473)
153 COG5322 Predicted dehydrogenas 92.8 0.41 8.9E-06 46.7 7.5 52 182-233 143-195 (351)
154 COG1748 LYS9 Saccharopine dehy 92.7 0.23 5E-06 50.6 6.1 32 207-239 2-34 (389)
155 PRK00258 aroE shikimate 5-dehy 92.7 0.3 6.6E-06 47.0 6.7 51 185-239 105-156 (278)
156 PF00044 Gp_dh_N: Glyceraldehy 92.7 0.24 5.2E-06 44.0 5.5 70 208-277 2-113 (151)
157 TIGR03366 HpnZ_proposed putati 92.7 1.4 2.9E-05 41.9 11.1 80 204-284 119-220 (280)
158 TIGR00872 gnd_rel 6-phosphoglu 92.7 0.29 6.2E-06 47.6 6.6 135 208-344 2-208 (298)
159 cd01079 NAD_bind_m-THF_DH NAD 92.7 0.34 7.3E-06 44.9 6.6 57 182-239 33-95 (197)
160 PRK05562 precorrin-2 dehydroge 92.6 0.47 1E-05 44.8 7.7 77 203-279 22-113 (223)
161 PRK00421 murC UDP-N-acetylmura 92.6 0.43 9.3E-06 49.1 8.1 35 204-239 5-40 (461)
162 PRK12861 malic enzyme; Reviewe 92.5 0.77 1.7E-05 50.6 10.2 103 118-239 119-224 (764)
163 PRK13403 ketol-acid reductoiso 92.5 0.16 3.4E-06 50.7 4.5 32 204-235 14-45 (335)
164 PRK00048 dihydrodipicolinate r 92.5 0.34 7.5E-06 46.2 6.7 74 207-280 2-88 (257)
165 PRK09436 thrA bifunctional asp 92.5 0.53 1.2E-05 52.3 9.1 91 199-292 458-584 (819)
166 PRK13535 erythrose 4-phosphate 92.5 0.51 1.1E-05 47.2 8.1 71 207-277 2-116 (336)
167 PLN00203 glutamyl-tRNA reducta 92.4 2.4 5.2E-05 44.8 13.5 48 192-239 251-299 (519)
168 COG1635 THI4 Ribulose 1,5-bisp 92.4 0.4 8.7E-06 45.6 6.8 35 204-239 28-62 (262)
169 PRK08993 2-deoxy-D-gluconate 3 92.3 0.4 8.6E-06 44.6 6.8 33 203-235 7-40 (253)
170 PRK13529 malate dehydrogenase; 92.3 4.1 8.8E-05 43.5 14.9 149 112-279 218-414 (563)
171 COG2344 AT-rich DNA-binding pr 92.3 0.39 8.3E-06 44.4 6.4 106 186-294 65-192 (211)
172 PRK13302 putative L-aspartate 92.2 0.46 1E-05 45.8 7.3 77 204-280 4-95 (271)
173 PLN02586 probable cinnamyl alc 92.2 0.53 1.2E-05 46.6 8.0 78 204-281 182-277 (360)
174 PLN02306 hydroxypyruvate reduc 92.2 0.21 4.5E-06 50.8 5.1 34 202-235 161-195 (386)
175 COG0771 MurD UDP-N-acetylmuram 92.1 0.56 1.2E-05 48.7 8.2 38 204-242 5-42 (448)
176 PRK12742 oxidoreductase; Provi 92.1 1.7 3.8E-05 39.4 10.7 32 204-235 4-36 (237)
177 PRK15461 NADH-dependent gamma- 92.0 0.36 7.8E-06 46.9 6.3 31 208-239 3-33 (296)
178 PRK12549 shikimate 5-dehydroge 92.0 0.41 9E-06 46.5 6.6 51 185-239 110-160 (284)
179 PF07991 IlvN: Acetohydroxy ac 91.9 0.19 4.2E-06 45.2 3.9 35 204-239 2-36 (165)
180 PF01118 Semialdhyde_dh: Semia 91.8 0.23 5E-06 41.7 4.2 73 208-280 1-94 (121)
181 PRK06813 homoserine dehydrogen 91.8 0.54 1.2E-05 47.2 7.4 88 207-297 3-133 (346)
182 KOG0068 D-3-phosphoglycerate d 91.7 0.18 4E-06 50.3 3.9 35 201-235 141-175 (406)
183 TIGR01505 tartro_sem_red 2-hyd 91.6 3.4 7.3E-05 39.7 12.6 31 208-239 1-31 (291)
184 PRK13940 glutamyl-tRNA reducta 91.6 4.6 9.9E-05 41.5 14.1 38 202-239 177-214 (414)
185 PRK13304 L-aspartate dehydroge 91.5 0.5 1.1E-05 45.3 6.6 70 207-277 2-86 (265)
186 PRK12481 2-deoxy-D-gluconate 3 91.5 0.43 9.3E-06 44.4 6.0 33 203-235 5-38 (251)
187 KOG2018 Predicted dinucleotide 91.5 0.6 1.3E-05 46.4 7.1 36 204-239 72-107 (430)
188 PRK02006 murD UDP-N-acetylmura 91.5 0.71 1.5E-05 48.0 8.2 35 204-239 5-39 (498)
189 TIGR01832 kduD 2-deoxy-D-gluco 91.4 0.49 1.1E-05 43.4 6.3 34 203-236 2-36 (248)
190 PRK05479 ketol-acid reductoiso 91.4 0.25 5.3E-06 49.3 4.5 30 204-233 15-44 (330)
191 PRK00683 murD UDP-N-acetylmura 91.4 0.84 1.8E-05 46.4 8.4 77 205-283 2-90 (418)
192 COG0190 FolD 5,10-methylene-te 91.4 0.57 1.2E-05 45.7 6.8 73 182-263 136-210 (283)
193 PRK06550 fabG 3-ketoacyl-(acyl 91.3 1.5 3.3E-05 39.8 9.3 35 203-238 2-37 (235)
194 PLN02358 glyceraldehyde-3-phos 91.3 0.99 2.1E-05 45.2 8.6 71 207-277 6-120 (338)
195 PRK10637 cysG siroheme synthas 91.2 0.72 1.6E-05 47.8 7.9 79 202-280 8-101 (457)
196 PRK04308 murD UDP-N-acetylmura 91.2 0.77 1.7E-05 46.9 8.1 35 204-239 3-37 (445)
197 PRK07792 fabG 3-ketoacyl-(acyl 91.2 0.35 7.7E-06 46.7 5.3 36 202-238 8-44 (306)
198 PTZ00142 6-phosphogluconate de 91.1 0.38 8.3E-06 50.1 5.8 136 207-344 2-218 (470)
199 PF00070 Pyr_redox: Pyridine n 91.1 0.43 9.2E-06 36.9 4.7 60 208-282 1-60 (80)
200 PLN02178 cinnamyl-alcohol dehy 91.1 0.74 1.6E-05 46.1 7.6 79 205-283 178-274 (375)
201 TIGR02622 CDP_4_6_dhtase CDP-g 91.1 0.63 1.4E-05 45.6 7.0 33 204-236 2-35 (349)
202 PRK01368 murD UDP-N-acetylmura 91.0 0.69 1.5E-05 47.8 7.5 32 205-238 5-36 (454)
203 PRK09880 L-idonate 5-dehydroge 90.9 0.98 2.1E-05 44.1 8.2 77 204-281 168-265 (343)
204 PRK00676 hemA glutamyl-tRNA re 90.9 0.46 1E-05 47.5 5.9 77 191-268 160-248 (338)
205 PRK15425 gapA glyceraldehyde-3 90.8 1.1 2.4E-05 44.7 8.4 74 207-280 3-117 (331)
206 cd08230 glucose_DH Glucose deh 90.8 0.86 1.9E-05 44.7 7.6 77 204-280 171-267 (355)
207 PRK06171 sorbitol-6-phosphate 90.8 1.2 2.6E-05 41.4 8.3 36 203-239 6-42 (266)
208 cd05312 NAD_bind_1_malic_enz N 90.7 1.8 3.9E-05 42.2 9.6 93 185-279 4-137 (279)
209 COG0057 GapA Glyceraldehyde-3- 90.7 0.74 1.6E-05 45.9 7.0 33 207-239 2-36 (335)
210 PTZ00317 NADP-dependent malic 90.7 2.9 6.3E-05 44.5 11.8 148 113-279 221-413 (559)
211 PRK08605 D-lactate dehydrogena 90.7 0.33 7.3E-06 48.1 4.7 38 201-239 141-179 (332)
212 PLN02520 bifunctional 3-dehydr 90.6 0.62 1.3E-05 49.2 6.8 55 184-239 351-411 (529)
213 TIGR00465 ilvC ketol-acid redu 90.5 0.41 8.9E-06 47.3 5.1 34 204-237 1-34 (314)
214 PLN02272 glyceraldehyde-3-phos 90.5 1.2 2.7E-05 45.8 8.6 71 207-277 86-199 (421)
215 PLN02572 UDP-sulfoquinovose sy 90.4 4.6 9.9E-05 41.6 12.9 32 204-235 45-77 (442)
216 PRK05717 oxidoreductase; Valid 90.4 0.47 1E-05 44.0 5.1 36 202-238 6-42 (255)
217 cd01491 Ube1_repeat1 Ubiquitin 90.3 0.51 1.1E-05 46.1 5.5 36 204-239 17-52 (286)
218 cd01492 Aos1_SUMO Ubiquitin ac 90.2 0.43 9.3E-06 43.9 4.6 36 204-239 19-54 (197)
219 PRK10217 dTDP-glucose 4,6-dehy 90.0 3.2 6.9E-05 40.5 10.9 81 207-291 2-85 (355)
220 PRK06200 2,3-dihydroxy-2,3-dih 89.9 0.67 1.5E-05 43.1 5.8 34 204-238 4-38 (263)
221 PF02737 3HCDH_N: 3-hydroxyacy 89.9 0.58 1.3E-05 42.3 5.2 31 208-239 1-31 (180)
222 PRK12548 shikimate 5-dehydroge 89.9 0.84 1.8E-05 44.3 6.6 49 186-239 110-159 (289)
223 PRK03659 glutathione-regulated 89.8 1.2 2.6E-05 47.7 8.3 32 207-239 401-432 (601)
224 cd00640 Trp-synth-beta_II Tryp 89.8 11 0.00023 35.2 13.7 167 184-353 30-231 (244)
225 PLN02350 phosphogluconate dehy 89.6 0.5 1.1E-05 49.6 5.1 135 207-343 7-223 (493)
226 PRK08300 acetaldehyde dehydrog 89.5 1.1 2.3E-05 44.3 7.0 77 205-281 3-99 (302)
227 PF03807 F420_oxidored: NADP o 89.5 0.55 1.2E-05 37.1 4.2 31 208-238 1-34 (96)
228 TIGR01809 Shik-DH-AROM shikima 89.4 0.91 2E-05 44.0 6.4 51 185-239 106-158 (282)
229 cd01485 E1-1_like Ubiquitin ac 89.3 0.43 9.3E-06 43.9 3.9 44 204-249 17-60 (198)
230 TIGR00036 dapB dihydrodipicoli 89.3 1.1 2.3E-05 43.2 6.8 74 207-280 2-96 (266)
231 KOG1370 S-adenosylhomocysteine 89.3 0.41 8.8E-06 47.4 3.8 35 204-239 212-246 (434)
232 PRK06125 short chain dehydroge 89.2 3.2 7E-05 38.4 9.8 36 202-238 3-39 (259)
233 PRK08264 short chain dehydroge 89.2 1.5 3.3E-05 39.9 7.4 33 203-235 3-37 (238)
234 COG2085 Predicted dinucleotide 89.1 1.1 2.5E-05 41.9 6.5 32 207-239 2-33 (211)
235 PRK15057 UDP-glucose 6-dehydro 89.1 3.2 7E-05 42.2 10.4 30 208-239 2-31 (388)
236 TIGR00873 gnd 6-phosphoglucona 89.1 0.62 1.3E-05 48.6 5.3 133 209-344 2-215 (467)
237 PRK04207 glyceraldehyde-3-phos 89.0 1.3 2.8E-05 44.2 7.4 73 207-279 2-105 (341)
238 TIGR00518 alaDH alanine dehydr 89.0 1.1 2.3E-05 45.3 6.8 85 204-291 165-274 (370)
239 COG2084 MmsB 3-hydroxyisobutyr 89.0 0.85 1.9E-05 44.6 5.9 81 207-290 1-125 (286)
240 TIGR00507 aroE shikimate 5-deh 88.9 1.1 2.5E-05 42.7 6.7 50 185-239 100-149 (270)
241 PTZ00023 glyceraldehyde-3-phos 88.9 1.7 3.7E-05 43.5 8.1 74 207-280 3-118 (337)
242 PRK06349 homoserine dehydrogen 88.8 1.1 2.4E-05 46.1 6.8 74 207-280 4-101 (426)
243 cd08239 THR_DH_like L-threonin 88.8 2 4.4E-05 41.5 8.4 78 205-282 163-262 (339)
244 KOG1429 dTDP-glucose 4-6-dehyd 88.8 1.3 2.8E-05 43.7 6.8 89 200-290 21-114 (350)
245 PRK04148 hypothetical protein; 88.7 1 2.3E-05 39.3 5.6 34 204-239 15-48 (134)
246 KOG2380 Prephenate dehydrogena 88.7 0.53 1.1E-05 47.3 4.2 34 205-239 51-84 (480)
247 PRK08642 fabG 3-ketoacyl-(acyl 88.7 0.63 1.4E-05 42.6 4.6 33 204-236 3-36 (253)
248 PRK06300 enoyl-(acyl carrier p 88.6 0.66 1.4E-05 45.3 4.9 35 202-237 4-41 (299)
249 PRK13303 L-aspartate dehydroge 88.6 1.1 2.3E-05 43.1 6.2 74 207-280 2-89 (265)
250 PRK15059 tartronate semialdehy 88.5 1.1 2.3E-05 43.7 6.2 31 208-239 2-32 (292)
251 cd00762 NAD_bind_malic_enz NAD 88.4 2.3 5E-05 41.0 8.3 93 185-279 4-138 (254)
252 PRK12749 quinate/shikimate deh 88.4 1.2 2.6E-05 43.4 6.6 51 185-239 107-157 (288)
253 PLN03096 glyceraldehyde-3-phos 88.4 1.8 3.9E-05 44.3 8.0 72 207-278 61-176 (395)
254 PF03721 UDPG_MGDP_dh_N: UDP-g 88.4 0.65 1.4E-05 42.3 4.4 32 207-239 1-32 (185)
255 smart00846 Gp_dh_N Glyceraldeh 88.4 2.8 6E-05 37.0 8.2 31 208-238 2-33 (149)
256 PF03435 Saccharop_dh: Sacchar 88.4 0.51 1.1E-05 47.2 4.0 72 209-281 1-96 (386)
257 PRK07729 glyceraldehyde-3-phos 88.2 2.1 4.5E-05 43.0 8.2 73 207-279 3-116 (343)
258 PRK07403 glyceraldehyde-3-phos 88.2 1.8 4E-05 43.3 7.7 72 207-278 2-116 (337)
259 cd08237 ribitol-5-phosphate_DH 88.1 0.73 1.6E-05 45.2 4.9 77 205-282 163-256 (341)
260 PRK07523 gluconate 5-dehydroge 88.0 0.83 1.8E-05 42.3 4.9 36 203-239 7-43 (255)
261 PRK12490 6-phosphogluconate de 88.0 1.1 2.4E-05 43.5 6.0 137 208-345 2-210 (299)
262 PRK06182 short chain dehydroge 88.0 0.74 1.6E-05 43.2 4.6 31 205-235 2-33 (273)
263 PRK12828 short chain dehydroge 87.9 0.84 1.8E-05 41.2 4.8 33 203-235 4-37 (239)
264 PRK06128 oxidoreductase; Provi 87.9 5 0.00011 38.4 10.4 33 204-237 53-86 (300)
265 PRK07370 enoyl-(acyl carrier p 87.9 0.84 1.8E-05 42.8 5.0 34 203-237 3-39 (258)
266 PLN02514 cinnamyl-alcohol dehy 87.8 2.4 5.1E-05 41.9 8.3 87 197-283 172-276 (357)
267 PRK12862 malic enzyme; Reviewe 87.8 3.1 6.8E-05 46.0 9.9 56 183-239 170-228 (763)
268 TIGR02822 adh_fam_2 zinc-bindi 87.7 1.6 3.5E-05 42.6 7.0 77 205-282 165-254 (329)
269 TIGR02825 B4_12hDH leukotriene 87.7 2 4.4E-05 41.3 7.6 77 204-280 137-235 (325)
270 PRK14027 quinate/shikimate deh 87.6 1.5 3.1E-05 42.8 6.5 51 185-239 110-160 (283)
271 TIGR03736 PRTRC_ThiF PRTRC sys 87.6 0.82 1.8E-05 43.7 4.7 34 205-239 10-54 (244)
272 PRK13301 putative L-aspartate 87.6 1.2 2.7E-05 43.1 5.9 71 207-277 3-87 (267)
273 COG0281 SfcA Malic enzyme [Ene 87.5 1.6 3.5E-05 44.8 7.0 93 183-277 176-295 (432)
274 TIGR03201 dearomat_had 6-hydro 87.5 1.2 2.6E-05 43.6 6.0 79 205-283 166-273 (349)
275 PRK12826 3-ketoacyl-(acyl-carr 87.4 0.93 2E-05 41.3 4.9 33 204-236 4-37 (251)
276 PLN02712 arogenate dehydrogena 87.4 0.85 1.8E-05 49.6 5.2 39 200-239 363-401 (667)
277 PF13380 CoA_binding_2: CoA bi 87.3 1.4 2.9E-05 37.1 5.4 33 207-239 1-37 (116)
278 PRK03803 murD UDP-N-acetylmura 87.3 1.9 4.2E-05 44.0 7.6 33 206-239 6-38 (448)
279 PRK08628 short chain dehydroge 87.2 0.97 2.1E-05 41.8 4.9 35 201-235 2-37 (258)
280 TIGR01316 gltA glutamate synth 87.2 2.1 4.6E-05 44.0 7.8 60 204-282 270-329 (449)
281 COG0345 ProC Pyrroline-5-carbo 87.1 1.6 3.5E-05 42.3 6.4 32 207-239 2-37 (266)
282 KOG0022 Alcohol dehydrogenase, 87.0 0.56 1.2E-05 46.7 3.2 137 180-324 174-342 (375)
283 PRK01390 murD UDP-N-acetylmura 86.9 0.9 2E-05 46.6 4.9 35 204-239 7-41 (460)
284 PRK06138 short chain dehydroge 86.8 1.1 2.4E-05 41.0 5.0 34 203-236 2-36 (252)
285 PRK06505 enoyl-(acyl carrier p 86.8 1 2.2E-05 42.8 4.8 34 204-238 5-41 (271)
286 PLN03154 putative allyl alcoho 86.7 2.4 5.2E-05 41.7 7.6 77 204-280 157-256 (348)
287 PRK06841 short chain dehydroge 86.7 1.1 2.4E-05 41.2 5.0 33 203-235 12-45 (255)
288 PF01408 GFO_IDH_MocA: Oxidore 86.7 2 4.4E-05 35.0 6.0 32 208-239 2-35 (120)
289 PF02254 TrkA_N: TrkA-N domain 86.6 1 2.3E-05 36.7 4.3 30 209-239 1-30 (116)
290 PLN02896 cinnamyl-alcohol dehy 86.5 1.1 2.4E-05 43.9 5.1 37 201-237 5-42 (353)
291 cd08300 alcohol_DH_class_III c 86.5 8 0.00017 38.1 11.3 80 204-283 185-289 (368)
292 PRK09466 metL bifunctional asp 86.4 3 6.4E-05 46.5 8.8 83 204-289 456-575 (810)
293 PRK07533 enoyl-(acyl carrier p 86.4 1.2 2.5E-05 41.8 5.0 36 203-239 7-45 (258)
294 KOG0024 Sorbitol dehydrogenase 86.4 1.5 3.2E-05 43.9 5.7 85 205-292 169-254 (354)
295 PRK06701 short chain dehydroge 86.4 3 6.5E-05 39.9 7.9 33 203-235 43-76 (290)
296 PRK06179 short chain dehydroge 86.4 1.5 3.3E-05 40.8 5.8 32 205-236 3-35 (270)
297 COG0686 Ald Alanine dehydrogen 86.3 1.3 2.7E-05 44.2 5.2 86 204-292 166-276 (371)
298 PRK02705 murD UDP-N-acetylmura 86.3 2.7 5.9E-05 42.9 8.0 31 208-239 2-32 (459)
299 PRK12938 acetyacetyl-CoA reduc 86.3 1.3 2.8E-05 40.5 5.2 35 204-238 1-36 (246)
300 PLN02688 pyrroline-5-carboxyla 86.3 2.5 5.4E-05 39.9 7.2 31 208-239 2-37 (266)
301 PRK07060 short chain dehydroge 86.2 1.3 2.8E-05 40.4 5.0 34 202-235 5-39 (245)
302 PRK03806 murD UDP-N-acetylmura 86.1 3.5 7.6E-05 41.9 8.7 35 204-239 4-38 (438)
303 TIGR03215 ac_ald_DH_ac acetald 86.1 2.2 4.9E-05 41.7 6.9 74 207-280 2-92 (285)
304 TIGR01692 HIBADH 3-hydroxyisob 86.1 8.1 0.00018 37.1 10.8 28 211-239 1-28 (288)
305 PRK08339 short chain dehydroge 86.0 1.3 2.8E-05 41.6 5.1 37 202-239 4-41 (263)
306 PRK13394 3-hydroxybutyrate deh 85.9 1.2 2.7E-05 40.9 4.9 34 204-238 5-39 (262)
307 PRK06079 enoyl-(acyl carrier p 85.9 1.2 2.6E-05 41.5 4.8 34 204-238 5-41 (252)
308 PRK08217 fabG 3-ketoacyl-(acyl 85.9 1.2 2.7E-05 40.5 4.8 35 204-239 3-38 (253)
309 KOG0069 Glyoxylate/hydroxypyru 85.8 1.8 4E-05 43.3 6.2 37 201-238 157-193 (336)
310 PRK07774 short chain dehydroge 85.8 1.3 2.8E-05 40.6 4.9 35 204-239 4-39 (250)
311 PRK10309 galactitol-1-phosphat 85.8 2.1 4.6E-05 41.7 6.6 80 204-283 159-261 (347)
312 PRK06057 short chain dehydroge 85.7 1.3 2.7E-05 41.1 4.8 34 204-238 5-39 (255)
313 PRK08594 enoyl-(acyl carrier p 85.7 1.3 2.9E-05 41.5 5.0 35 203-238 4-41 (257)
314 PRK06523 short chain dehydroge 85.7 1.3 2.9E-05 40.9 5.0 34 202-235 5-39 (260)
315 cd08295 double_bond_reductase_ 85.6 3.4 7.3E-05 40.1 8.0 78 204-281 150-250 (338)
316 PRK05867 short chain dehydroge 85.6 1.4 2.9E-05 40.8 5.0 36 203-239 6-42 (253)
317 COG1063 Tdh Threonine dehydrog 85.6 3.5 7.5E-05 41.0 8.1 79 205-283 168-270 (350)
318 TIGR01087 murD UDP-N-acetylmur 85.5 2.6 5.6E-05 42.8 7.3 31 208-239 1-31 (433)
319 cd08281 liver_ADH_like1 Zinc-d 85.4 6.1 0.00013 39.0 9.8 77 205-282 191-290 (371)
320 PRK12771 putative glutamate sy 85.3 1.1 2.3E-05 47.5 4.6 34 204-238 135-168 (564)
321 TIGR01534 GAPDH-I glyceraldehy 85.3 3 6.5E-05 41.6 7.4 72 208-279 1-117 (327)
322 COG2130 Putative NADP-dependen 85.3 2 4.3E-05 42.6 6.0 43 197-239 142-185 (340)
323 TIGR01921 DAP-DH diaminopimela 85.2 4.9 0.00011 40.1 8.9 34 206-239 3-37 (324)
324 cd05188 MDR Medium chain reduc 85.2 4.2 9.1E-05 37.0 8.0 34 204-237 133-166 (271)
325 PRK07231 fabG 3-ketoacyl-(acyl 85.1 1.5 3.3E-05 40.0 5.0 35 203-238 2-37 (251)
326 PRK06949 short chain dehydroge 85.1 1.5 3.3E-05 40.3 5.0 34 202-235 5-39 (258)
327 TIGR03628 arch_S11P archaeal r 85.1 3.5 7.5E-05 35.1 6.7 61 179-239 38-107 (114)
328 PLN02778 3,5-epimerase/4-reduc 85.1 7.7 0.00017 37.4 10.1 29 205-233 8-37 (298)
329 PRK14619 NAD(P)H-dependent gly 85.0 1.3 2.7E-05 43.2 4.6 34 205-239 3-36 (308)
330 PRK04663 murD UDP-N-acetylmura 84.9 3.6 7.8E-05 42.0 8.1 35 204-239 4-41 (438)
331 PRK09607 rps11p 30S ribosomal 84.9 3.7 7.9E-05 35.8 6.9 61 179-239 45-114 (132)
332 KOG0029 Amine oxidase [Seconda 84.8 1.3 2.8E-05 46.6 4.9 66 204-270 13-86 (501)
333 PRK05876 short chain dehydroge 84.8 1.4 3.1E-05 41.8 4.8 35 204-239 4-39 (275)
334 PLN02256 arogenate dehydrogena 84.8 2.1 4.5E-05 42.1 6.0 35 204-238 34-68 (304)
335 COG4015 Predicted dinucleotide 84.6 4.4 9.5E-05 36.9 7.4 84 204-293 17-146 (217)
336 PLN02730 enoyl-[acyl-carrier-p 84.6 1.4 3.1E-05 43.1 4.8 34 201-234 4-40 (303)
337 PRK08945 putative oxoacyl-(acy 84.6 1.4 3.1E-05 40.5 4.6 34 204-238 10-44 (247)
338 cd08294 leukotriene_B4_DH_like 84.5 3.4 7.4E-05 39.4 7.3 78 204-281 142-240 (329)
339 cd05286 QOR2 Quinone oxidoredu 84.5 3.4 7.3E-05 38.4 7.1 35 204-238 135-170 (320)
340 KOG0725 Reductases with broad 84.5 3.7 8E-05 39.6 7.5 36 203-239 5-41 (270)
341 PRK07890 short chain dehydroge 84.4 1.5 3.3E-05 40.3 4.8 35 204-239 3-38 (258)
342 PRK08955 glyceraldehyde-3-phos 84.4 4.7 0.0001 40.4 8.4 73 207-279 3-115 (334)
343 PRK05579 bifunctional phosphop 84.4 2.4 5.3E-05 43.3 6.5 35 202-236 184-235 (399)
344 KOG2336 Molybdopterin biosynth 84.4 2 4.4E-05 42.2 5.6 47 192-239 63-115 (422)
345 PRK07831 short chain dehydroge 84.3 1.6 3.4E-05 40.6 4.8 35 204-239 15-51 (262)
346 TIGR01472 gmd GDP-mannose 4,6- 84.3 11 0.00023 36.8 10.8 31 207-237 1-32 (343)
347 PRK11891 aspartate carbamoyltr 84.3 20 0.00042 37.2 13.0 153 123-280 143-314 (429)
348 PRK05786 fabG 3-ketoacyl-(acyl 84.2 1.6 3.5E-05 39.6 4.7 32 204-235 3-35 (238)
349 PRK06935 2-deoxy-D-gluconate 3 84.2 1.7 3.7E-05 40.3 5.0 35 203-238 12-47 (258)
350 PLN02240 UDP-glucose 4-epimera 84.1 1.7 3.6E-05 42.3 5.1 34 203-236 2-36 (352)
351 PRK07984 enoyl-(acyl carrier p 84.1 1.5 3.4E-05 41.4 4.7 34 204-238 4-40 (262)
352 PRK12429 3-hydroxybutyrate deh 84.1 1.7 3.6E-05 39.9 4.8 32 204-235 2-34 (258)
353 PRK07024 short chain dehydroge 84.0 2.2 4.7E-05 39.6 5.6 81 206-291 2-89 (257)
354 PRK09072 short chain dehydroge 84.0 1.8 3.9E-05 40.2 5.1 33 203-235 2-35 (263)
355 PRK06603 enoyl-(acyl carrier p 84.0 1.6 3.4E-05 41.0 4.7 34 204-238 6-42 (260)
356 PRK12823 benD 1,6-dihydroxycyc 83.9 1.7 3.7E-05 40.2 4.8 35 204-239 6-41 (260)
357 PRK06124 gluconate 5-dehydroge 83.8 1.8 4E-05 39.8 5.0 36 203-239 8-44 (256)
358 PRK08416 7-alpha-hydroxysteroi 83.8 1.9 4.2E-05 40.1 5.2 37 202-238 4-41 (260)
359 PRK06184 hypothetical protein; 83.8 2.7 5.8E-05 43.6 6.7 58 206-277 3-60 (502)
360 PRK05557 fabG 3-ketoacyl-(acyl 83.7 2.1 4.6E-05 38.7 5.3 35 203-237 2-37 (248)
361 PRK06194 hypothetical protein; 83.7 1.7 3.7E-05 40.9 4.8 35 204-239 4-39 (287)
362 PF03949 Malic_M: Malic enzyme 83.7 2.6 5.7E-05 40.6 6.1 55 185-239 4-68 (255)
363 PLN02740 Alcohol dehydrogenase 83.7 4.4 9.5E-05 40.3 7.9 77 204-280 197-298 (381)
364 PRK06172 short chain dehydroge 83.6 1.8 3.8E-05 39.9 4.8 36 203-239 4-40 (253)
365 PRK06035 3-hydroxyacyl-CoA deh 83.6 1.4 3.1E-05 42.4 4.3 32 207-239 4-35 (291)
366 PRK09620 hypothetical protein; 83.6 1.8 3.9E-05 40.9 4.8 34 204-237 1-51 (229)
367 PRK09186 flagellin modificatio 83.6 1.8 3.9E-05 39.8 4.8 32 204-235 2-34 (256)
368 PRK08703 short chain dehydroge 83.5 2 4.4E-05 39.2 5.1 35 203-238 3-38 (239)
369 PRK06398 aldose dehydrogenase; 83.3 1.9 4.1E-05 40.2 4.9 33 203-235 3-36 (258)
370 PRK07454 short chain dehydroge 83.3 2.3 4.9E-05 38.9 5.3 34 205-239 5-39 (241)
371 PRK06196 oxidoreductase; Provi 83.3 2 4.3E-05 41.5 5.2 35 201-235 21-56 (315)
372 PRK09260 3-hydroxybutyryl-CoA 83.3 1.4 3E-05 42.4 4.1 32 207-239 2-33 (288)
373 PRK07067 sorbitol dehydrogenas 83.2 1.9 4.1E-05 39.9 4.9 35 204-239 4-39 (257)
374 PLN02545 3-hydroxybutyryl-CoA 83.2 1.6 3.4E-05 42.1 4.5 32 207-239 5-36 (295)
375 PRK08085 gluconate 5-dehydroge 83.2 1.9 4.2E-05 39.7 4.9 36 203-239 6-42 (254)
376 TIGR02819 fdhA_non_GSH formald 83.2 2.3 4.9E-05 43.0 5.7 81 204-284 184-301 (393)
377 PRK14573 bifunctional D-alanyl 83.2 3.6 7.9E-05 45.6 7.8 32 207-239 5-37 (809)
378 PRK08265 short chain dehydroge 83.2 2 4.3E-05 40.2 4.9 36 203-239 3-39 (261)
379 PRK12829 short chain dehydroge 83.0 2 4.2E-05 39.7 4.8 32 204-235 9-41 (264)
380 PRK05872 short chain dehydroge 83.0 1.9 4.2E-05 41.2 5.0 36 203-239 6-42 (296)
381 PRK07236 hypothetical protein; 83.0 3.3 7.1E-05 41.2 6.7 62 204-278 4-65 (386)
382 PLN02237 glyceraldehyde-3-phos 83.0 4.7 0.0001 41.8 7.9 72 207-278 76-191 (442)
383 PRK07063 short chain dehydroge 83.0 1.9 4.2E-05 39.9 4.8 35 204-239 5-40 (260)
384 COG0654 UbiH 2-polyprenyl-6-me 83.0 2.4 5.2E-05 42.4 5.8 59 207-278 3-61 (387)
385 PRK06141 ornithine cyclodeamin 83.0 6.2 0.00013 38.8 8.5 66 169-239 92-159 (314)
386 PLN02662 cinnamyl-alcohol dehy 82.9 1.6 3.5E-05 41.7 4.3 32 205-236 3-35 (322)
387 PRK12769 putative oxidoreducta 82.9 1.5 3.4E-05 47.2 4.6 34 205-239 326-359 (654)
388 cd08301 alcohol_DH_plants Plan 82.8 9 0.0002 37.7 9.7 82 204-285 186-292 (369)
389 PRK08063 enoyl-(acyl carrier p 82.8 2.3 5E-05 38.9 5.2 35 204-238 2-37 (250)
390 PRK05875 short chain dehydroge 82.8 2 4.2E-05 40.2 4.8 34 203-236 4-38 (276)
391 PRK12748 3-ketoacyl-(acyl-carr 82.7 2 4.4E-05 39.7 4.8 33 203-235 2-37 (256)
392 PF01946 Thi4: Thi4 family; PD 82.7 1.1 2.4E-05 42.4 2.9 66 206-281 17-85 (230)
393 PRK08415 enoyl-(acyl carrier p 82.6 1.9 4.2E-05 41.0 4.7 35 204-239 3-40 (274)
394 PRK07806 short chain dehydroge 82.6 2.6 5.5E-05 38.6 5.4 34 204-237 4-38 (248)
395 PRK06567 putative bifunctional 82.6 1.5 3.2E-05 49.7 4.4 33 204-237 381-413 (1028)
396 TIGR03325 BphB_TodD cis-2,3-di 82.5 2.2 4.8E-05 39.7 5.0 35 203-238 2-37 (262)
397 PRK08213 gluconate 5-dehydroge 82.5 2.2 4.7E-05 39.5 4.9 36 202-238 8-44 (259)
398 PRK06197 short chain dehydroge 82.4 2 4.3E-05 41.2 4.8 34 203-236 13-47 (306)
399 PRK07035 short chain dehydroge 82.4 2.2 4.7E-05 39.3 4.9 35 203-238 5-40 (252)
400 PLN02206 UDP-glucuronate decar 82.4 1.8 4E-05 44.6 4.7 36 201-236 114-150 (442)
401 PRK07417 arogenate dehydrogena 82.4 1.8 4E-05 41.5 4.5 31 208-239 2-32 (279)
402 PRK08690 enoyl-(acyl carrier p 82.2 2.1 4.6E-05 40.1 4.8 33 204-237 4-39 (261)
403 PRK06114 short chain dehydroge 82.2 2.2 4.8E-05 39.5 4.9 36 203-239 5-41 (254)
404 TIGR01381 E1_like_apg7 E1-like 82.2 1.5 3.3E-05 47.4 4.1 36 204-239 336-371 (664)
405 COG3804 Uncharacterized conser 82.2 2.8 6E-05 41.2 5.5 33 207-239 3-36 (350)
406 PLN02253 xanthoxin dehydrogena 82.1 2.1 4.6E-05 40.1 4.8 35 203-238 15-50 (280)
407 COG0100 RpsK Ribosomal protein 81.9 5.6 0.00012 34.5 6.8 57 183-239 57-114 (129)
408 PRK07097 gluconate 5-dehydroge 81.9 2.3 5E-05 39.6 4.9 36 203-239 7-43 (265)
409 PRK07889 enoyl-(acyl carrier p 81.9 2.2 4.9E-05 39.8 4.8 34 204-238 5-41 (256)
410 PRK15181 Vi polysaccharide bio 81.8 2 4.4E-05 42.2 4.7 35 203-237 12-47 (348)
411 PRK09135 pteridine reductase; 81.8 2.4 5.1E-05 38.5 4.8 33 204-236 4-37 (249)
412 TIGR03309 matur_yqeB selenium- 81.8 2.6 5.6E-05 40.7 5.1 68 209-283 1-81 (256)
413 PRK00066 ldh L-lactate dehydro 81.7 4.5 9.8E-05 39.9 7.1 35 205-240 5-41 (315)
414 PRK05868 hypothetical protein; 81.7 2.2 4.8E-05 42.5 5.0 57 207-277 2-58 (372)
415 PRK06130 3-hydroxybutyryl-CoA 81.7 1.8 4E-05 41.9 4.3 32 207-239 5-36 (311)
416 PRK07825 short chain dehydroge 81.7 2.4 5.3E-05 39.6 5.0 35 203-238 2-37 (273)
417 PRK05808 3-hydroxybutyryl-CoA 81.7 1.8 3.9E-05 41.5 4.1 32 207-239 4-35 (282)
418 PLN02695 GDP-D-mannose-3',5'-e 81.6 2 4.4E-05 42.8 4.6 32 205-236 20-52 (370)
419 TIGR01292 TRX_reduct thioredox 81.6 6.1 0.00013 37.0 7.7 32 204-235 139-170 (300)
420 PRK12859 3-ketoacyl-(acyl-carr 81.6 2 4.4E-05 40.0 4.3 32 203-234 3-37 (256)
421 PRK07576 short chain dehydroge 81.5 2.4 5.1E-05 39.7 4.9 36 203-239 6-42 (264)
422 PRK11880 pyrroline-5-carboxyla 81.5 1.8 3.9E-05 40.9 4.0 85 207-296 3-103 (267)
423 PRK07814 short chain dehydroge 81.5 2.4 5.2E-05 39.6 4.8 35 203-238 7-42 (263)
424 KOG2017 Molybdopterin synthase 81.5 1.8 3.8E-05 43.7 4.0 38 202-239 62-99 (427)
425 PRK07856 short chain dehydroge 81.5 2.7 5.8E-05 38.8 5.1 35 203-238 3-38 (252)
426 PLN02214 cinnamoyl-CoA reducta 81.4 2.2 4.7E-05 41.9 4.8 33 204-236 8-41 (342)
427 PRK06500 short chain dehydroge 81.4 2.5 5.3E-05 38.6 4.8 32 204-235 4-36 (249)
428 PRK08936 glucose-1-dehydrogena 81.4 2.8 6.1E-05 38.9 5.3 35 203-237 4-39 (261)
429 PRK09496 trkA potassium transp 81.3 3.3 7.1E-05 42.0 6.1 46 193-239 217-263 (453)
430 PRK05653 fabG 3-ketoacyl-(acyl 81.3 2.6 5.6E-05 38.1 4.9 33 204-236 3-36 (246)
431 PRK07326 short chain dehydroge 81.3 2.5 5.5E-05 38.3 4.8 32 204-235 4-36 (237)
432 PRK07062 short chain dehydroge 81.2 2.5 5.5E-05 39.2 4.9 37 202-239 4-41 (265)
433 PRK08324 short chain dehydroge 81.1 2.3 4.9E-05 46.2 5.1 35 204-239 420-455 (681)
434 PRK06847 hypothetical protein; 81.1 3 6.5E-05 40.9 5.6 58 206-277 4-61 (375)
435 PRK12831 putative oxidoreducta 81.0 5.2 0.00011 41.4 7.5 30 204-233 279-308 (464)
436 PRK10669 putative cation:proto 80.9 1.8 3.8E-05 45.8 4.1 49 207-258 418-466 (558)
437 PRK08226 short chain dehydroge 80.9 2.6 5.6E-05 39.1 4.8 34 204-238 4-38 (263)
438 PRK12746 short chain dehydroge 80.8 3.2 6.9E-05 38.1 5.4 32 203-234 3-35 (254)
439 cd08293 PTGR2 Prostaglandin re 80.8 7.2 0.00016 37.6 8.1 75 206-280 155-252 (345)
440 PLN02986 cinnamyl-alcohol dehy 80.7 2.6 5.6E-05 40.6 4.9 34 205-238 4-38 (322)
441 PRK08293 3-hydroxybutyryl-CoA 80.7 2.1 4.6E-05 41.1 4.3 32 207-239 4-35 (287)
442 PRK12939 short chain dehydroge 80.7 2.7 5.9E-05 38.3 4.8 32 204-235 5-37 (250)
443 PRK08017 oxidoreductase; Provi 80.6 2.4 5.2E-05 38.9 4.5 29 207-235 3-32 (256)
444 PRK07577 short chain dehydroge 80.6 2.8 6.1E-05 37.9 4.9 32 205-236 2-34 (234)
445 PRK06940 short chain dehydroge 80.6 4.1 8.8E-05 38.6 6.1 32 206-239 2-33 (275)
446 COG0075 Serine-pyruvate aminot 80.6 72 0.0016 32.7 16.1 166 192-359 68-287 (383)
447 PLN00198 anthocyanidin reducta 80.5 2.4 5.3E-05 41.1 4.7 34 203-236 6-40 (338)
448 cd08242 MDR_like Medium chain 80.5 4.9 0.00011 38.3 6.7 79 204-282 154-245 (319)
449 PRK07530 3-hydroxybutyryl-CoA 80.4 2.2 4.8E-05 41.0 4.3 32 207-239 5-36 (292)
450 TIGR01915 npdG NADPH-dependent 80.3 2.4 5.3E-05 39.1 4.4 31 208-239 2-33 (219)
451 PF02629 CoA_binding: CoA bind 80.2 1.4 3.1E-05 35.5 2.5 36 206-241 3-39 (96)
452 PLN00141 Tic62-NAD(P)-related 80.2 2.6 5.7E-05 39.2 4.6 34 204-237 15-49 (251)
453 PRK08244 hypothetical protein; 80.2 3.3 7.1E-05 42.8 5.7 57 207-277 3-59 (493)
454 PRK12779 putative bifunctional 80.1 2 4.3E-05 48.7 4.4 35 204-239 304-338 (944)
455 PLN02427 UDP-apiose/xylose syn 80.0 2.7 5.9E-05 41.8 4.9 36 201-236 9-46 (386)
456 cd08292 ETR_like_2 2-enoyl thi 80.0 4.5 9.8E-05 38.4 6.3 77 205-281 139-237 (324)
457 TIGR03206 benzo_BadH 2-hydroxy 80.0 3 6.4E-05 38.1 4.8 32 204-235 1-33 (250)
458 PRK06914 short chain dehydroge 80.0 2.9 6.2E-05 39.2 4.8 32 205-236 2-34 (280)
459 PRK06077 fabG 3-ketoacyl-(acyl 80.0 3.5 7.5E-05 37.7 5.3 36 203-238 3-39 (252)
460 PRK06522 2-dehydropantoate 2-r 79.9 2.4 5.2E-05 40.4 4.4 29 208-236 2-30 (304)
461 PRK08159 enoyl-(acyl carrier p 79.9 2.8 6.1E-05 39.7 4.8 34 204-238 8-44 (272)
462 PRK06129 3-hydroxyacyl-CoA deh 79.9 2.3 4.9E-05 41.4 4.3 32 207-239 3-34 (308)
463 PRK05866 short chain dehydroge 79.9 3.1 6.7E-05 40.0 5.1 36 202-238 36-72 (293)
464 TIGR01546 GAPDH-II_archae glyc 79.8 5.2 0.00011 40.0 6.8 31 209-239 1-32 (333)
465 PRK12937 short chain dehydroge 79.7 3.5 7.6E-05 37.5 5.2 34 203-236 2-36 (245)
466 COG0677 WecC UDP-N-acetyl-D-ma 79.7 1.3 2.7E-05 45.4 2.4 32 207-239 10-41 (436)
467 PRK07478 short chain dehydroge 79.7 3.1 6.8E-05 38.3 4.9 35 203-238 3-38 (254)
468 PF01175 Urocanase: Urocanase; 79.7 15 0.00033 38.7 10.2 153 187-348 137-328 (546)
469 PRK06484 short chain dehydroge 79.6 10 0.00022 39.1 9.2 34 204-238 3-37 (520)
470 PF01494 FAD_binding_3: FAD bi 79.6 2.4 5.3E-05 40.3 4.3 56 208-277 3-58 (356)
471 PRK06463 fabG 3-ketoacyl-(acyl 79.5 3.3 7.2E-05 38.3 5.1 34 203-236 4-38 (255)
472 PRK12809 putative oxidoreducta 79.4 2.3 5E-05 45.8 4.5 34 205-239 309-342 (639)
473 COG0644 FixC Dehydrogenases (f 79.4 2.1 4.5E-05 43.1 3.9 31 207-238 4-34 (396)
474 TIGR03451 mycoS_dep_FDH mycoth 79.4 3.6 7.7E-05 40.4 5.5 76 205-280 176-274 (358)
475 PRK05309 30S ribosomal protein 79.4 7 0.00015 33.8 6.6 60 180-239 53-113 (128)
476 PTZ00353 glycosomal glyceralde 79.4 7.1 0.00015 39.2 7.6 32 207-238 3-35 (342)
477 cd06448 L-Ser-dehyd Serine deh 79.3 11 0.00023 37.1 8.8 51 186-238 33-83 (316)
478 PF01370 Epimerase: NAD depend 79.3 11 0.00024 33.8 8.4 75 209-291 1-76 (236)
479 PTZ00367 squalene epoxidase; P 79.2 8.3 0.00018 41.2 8.5 74 191-277 14-91 (567)
480 TIGR01082 murC UDP-N-acetylmur 79.2 6.2 0.00013 40.4 7.4 30 209-239 2-32 (448)
481 PRK05993 short chain dehydroge 79.2 2.8 6.1E-05 39.5 4.5 31 205-235 3-34 (277)
482 PRK07538 hypothetical protein; 79.2 4.1 8.8E-05 41.0 5.9 57 207-277 1-57 (413)
483 COG0604 Qor NADPH:quinone redu 79.1 5.4 0.00012 39.4 6.7 104 182-286 118-245 (326)
484 PRK08589 short chain dehydroge 79.1 3.1 6.8E-05 39.1 4.8 34 204-238 4-38 (272)
485 PRK06113 7-alpha-hydroxysteroi 79.1 3.2 6.9E-05 38.4 4.8 34 204-238 9-43 (255)
486 cd01488 Uba3_RUB Ubiquitin act 79.0 2.4 5.2E-05 41.6 4.1 32 208-239 1-32 (291)
487 PRK08277 D-mannonate oxidoredu 79.0 3.2 6.9E-05 38.9 4.8 37 202-239 6-43 (278)
488 PRK06997 enoyl-(acyl carrier p 79.0 3 6.4E-05 39.2 4.6 33 204-237 4-39 (260)
489 TIGR03026 NDP-sugDHase nucleot 79.0 2.4 5.2E-05 43.1 4.2 31 208-239 2-32 (411)
490 PRK11064 wecC UDP-N-acetyl-D-m 79.0 2.4 5.2E-05 43.4 4.2 32 207-239 4-35 (415)
491 PRK08850 2-octaprenyl-6-methox 79.0 5.8 0.00013 39.7 7.0 60 207-277 5-66 (405)
492 PRK05854 short chain dehydroge 78.9 3.2 6.9E-05 40.2 4.9 33 203-235 11-44 (313)
493 PRK12409 D-amino acid dehydrog 78.9 2.5 5.4E-05 42.3 4.3 32 207-239 2-33 (410)
494 PRK09242 tropinone reductase; 78.9 3.2 6.9E-05 38.3 4.8 33 203-235 6-39 (257)
495 PRK06475 salicylate hydroxylas 78.9 4.5 9.7E-05 40.5 6.1 57 207-277 3-59 (400)
496 cd05283 CAD1 Cinnamyl alcohol 78.9 13 0.00027 36.0 9.1 77 204-280 168-261 (337)
497 PRK06126 hypothetical protein; 78.8 4.1 8.9E-05 42.6 6.0 59 205-277 6-64 (545)
498 PRK12831 putative oxidoreducta 78.8 2.7 5.8E-05 43.5 4.6 34 204-238 138-171 (464)
499 PRK07985 oxidoreductase; Provi 78.8 3.3 7.1E-05 39.7 4.9 33 204-237 47-80 (294)
500 PRK11559 garR tartronate semia 78.8 2.8 6E-05 40.3 4.4 32 207-239 3-34 (296)
No 1
>PLN02477 glutamate dehydrogenase
Probab=100.00 E-value=7.6e-118 Score=891.91 Aligned_cols=359 Identities=88% Similarity=1.389 Sum_probs=355.7
Q ss_pred CCHHHHHHHHHHHHHHHcCCCHHHHHhccCCCeEEEEEEEEEcCCCceeEEEeEEeeecCCCCCCCCCeeeecCCCHHHH
Q 018214 1 MNALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEV 80 (359)
Q Consensus 1 ~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~p~r~~~~~ip~~~d~g~~~~~~g~rv~h~~~~GPa~GGiR~~~~~t~~ev 80 (359)
|++|++++++|++|+++++++|++.++|++|+|+++|+|||+||||++++|+|||||||+++||+||||||||++|++|+
T Consensus 1 ~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~p~r~~~v~~p~~~d~g~~~~~~gyRvqh~~~~GP~kGGiR~~p~v~~~ev 80 (410)
T PLN02477 1 MNALAATNRNFREAARLLGLDSKLEKSLLIPFREIKVECTIPKDDGTLASFVGFRVQHDNARGPMKGGIRYHPEVDPDEV 80 (410)
T ss_pred CCHHHHHHHHHHHHHHHcCCCHHHHHHHhcCceEEEEEEEEEECCCcEEEeeeeEeeecCccCCCCCCeeecCCCCHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHhhhcCCCCCcceEEeCCCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcCCCCCCCChhhHHHHHHHhhhh
Q 018214 81 NALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKF 160 (359)
Q Consensus 81 ~~LA~~Mt~K~Ala~lp~GGaKggI~~dP~~~s~~e~e~l~r~~~~~l~~~iG~~~di~apDvgt~~~~m~~i~d~~~~~ 160 (359)
++||+||||||||++||||||||||.+||+++|+.|+|+|+|+|+++|.+++|++.|||+|||||++++|+||+|+|+++
T Consensus 81 ~~La~~MT~K~Al~~lP~GGgKggI~~dP~~~s~~e~e~l~r~f~~~l~~~iG~~~DipapDvgt~~~~M~w~~d~y~~~ 160 (410)
T PLN02477 81 NALAQLMTWKTAVANIPYGGAKGGIGCDPRDLSESELERLTRVFTQKIHDLIGIHTDVPAPDMGTNAQTMAWILDEYSKF 160 (410)
T ss_pred HHHHHHHHHHHHhcCCCCcCceeeeccCCccCCHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCccccCcccccCCCCCCCchhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC-
Q 018214 161 HGHSPAVVTGKPIDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT- 239 (359)
Q Consensus 161 ~g~~~~~~tGkp~~~GG~~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~- 239 (359)
.|++|+++||||+.+|||.+|+++||+||+++++++++++|.+++|+||+||||||||+++|++|+++|+|||||||++
T Consensus 161 ~g~~~~~vtGkp~~~gGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G 240 (410)
T PLN02477 161 HGFSPAVVTGKPIDLGGSLGREAATGRGVVFATEALLAEHGKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITG 240 (410)
T ss_pred hCCCCceEeCCCcccCCCCCCCccchHHHHHHHHHHHHHcCCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCC
Confidence 9989999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred --------------------------------------------------CCcccccccccccceEEEecCCCCCCHHHH
Q 018214 240 --------------------------------------------------GGVLNKENAADVKAKFIIEAANHPTDPEAD 269 (359)
Q Consensus 240 --------------------------------------------------~~~I~~~na~~i~akiVvegAN~p~t~ea~ 269 (359)
+++||++|+++++||+|+||||+|+||+|+
T Consensus 241 ~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i~~~e~l~~~~DvliP~Al~~~I~~~na~~i~ak~I~egAN~p~t~ea~ 320 (410)
T PLN02477 241 AVKNENGLDIPALRKHVAEGGGLKGFPGGDPIDPDDILVEPCDVLIPAALGGVINKENAADVKAKFIVEAANHPTDPEAD 320 (410)
T ss_pred eEECCCCCCHHHHHHHHHhcCchhccccceEecCccceeccccEEeeccccccCCHhHHHHcCCcEEEeCCCCCCCHHHH
Confidence 899999999999999999999999999999
Q ss_pred HHHHhCCCeEeccccccccCcchhhHhhhhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 018214 270 EILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRV 349 (359)
Q Consensus 270 ~~L~~rGI~viPD~laNaGGVi~s~~E~~~n~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A~~Rv 349 (359)
++|++|||+|+||+++||||||+|||||+||+++++|++++|+++|+++|.++|+++++.|++++++||+|||++|++||
T Consensus 321 ~~L~~rGI~~~PD~~aNaGGVivs~~E~~qn~~~~~w~~~~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~a~~rv 400 (410)
T PLN02477 321 EILRKKGVVVLPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNRELDRYMTDAFKALKEMCKTHNCSLRMGAFTLGVNRV 400 (410)
T ss_pred HHHHHCCcEEEChHHhCCCCeeeeHHHhhhccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCC
Q 018214 350 AQATLLRGWE 359 (359)
Q Consensus 350 ~~a~~~rg~~ 359 (359)
++||+.||||
T Consensus 401 ~~a~~~rG~~ 410 (410)
T PLN02477 401 ARATVLRGWE 410 (410)
T ss_pred HHHHHhhCCC
Confidence 9999999997
No 2
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.8e-116 Score=867.67 Aligned_cols=357 Identities=50% Similarity=0.843 Sum_probs=352.7
Q ss_pred CHHHHHHHHHHHHHHHcCCCHHHHHhccCCCeEEEEEEEEEcCCCceeEEEeEEeeecCCCCCCCCCeeeecCCCHHHHH
Q 018214 2 NALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVN 81 (359)
Q Consensus 2 ~~~~~~~~~~~~a~~~~~~~~~~~~~l~~p~r~~~~~ip~~~d~g~~~~~~g~rv~h~~~~GPa~GGiR~~~~~t~~ev~ 81 (359)
++|+++++++.+|++.++++++++++|++|+|.++|++||+||||++++|+|||||||+++||+|||+||||++|++|++
T Consensus 2 ~~~~~a~~~~~~~~~~~~~~~~~~e~l~~p~r~i~~~i~v~~d~g~~~~~~g~rvqhn~a~GP~kGGiRfhP~v~~~ev~ 81 (411)
T COG0334 2 NEFEQAVKELEKALEPLYLDEGVLERLKEPERVIQVRIPVRMDDGSVKVFRGYRVQHNSALGPYKGGVRFHPYVTLEEVK 81 (411)
T ss_pred cHHHHHHHHHHHhhhhccCchhHHHHhcCceeEEEEEEEEEEcCCcEeeeEEEEEEecCCcCCccCceecCCCCCHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHhhhcCCCCCcceEEeCCCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcCCCCCCCChhhHHHHHHHhhhhh
Q 018214 82 ALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFH 161 (359)
Q Consensus 82 ~LA~~Mt~K~Ala~lp~GGaKggI~~dP~~~s~~e~e~l~r~~~~~l~~~iG~~~di~apDvgt~~~~m~~i~d~~~~~~ 161 (359)
+||+||||||||++||||||||||++||+.+|+.|+|||+|+|+++|.+++||++|||||||||++++|+||+|+|+++.
T Consensus 82 ~Ls~~MT~Knal~~Lp~GGGKGgi~~DPk~~S~~E~erl~raf~~~i~~~iGp~~dIpApDvgt~~~~m~wm~dey~~i~ 161 (411)
T COG0334 82 ALSFWMTLKNALAGLPYGGGKGGIIVDPKGLSDGELERLSRAFGRAIYRLIGPDTDIPAPDVGTNPQDMAWMMDEYSKIV 161 (411)
T ss_pred HHHHHHHHHHHHhCCCCCCCceeeeCCcccCCHHHHHHHHHHHHHHHHHhcCCCcEecccccCCCHHHHHHHHHhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CCccccCcccccCCCCCCCchhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC-
Q 018214 162 GH-SPAVVTGKPIDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT- 239 (359)
Q Consensus 162 g~-~~~~~tGkp~~~GG~~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~- 239 (359)
|. .|+++||||+++|||.+|+++|||||+++++++++.++.+++|+||+||||||||+++|++|++.|||||++||+.
T Consensus 162 g~~~~gv~TGKp~~~GGS~~r~~aTg~Gv~~~~~~a~~~~g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g 241 (411)
T COG0334 162 GNSAPGVFTGKPLELGGSLGRSEATGYGVFYAIREALKALGDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKG 241 (411)
T ss_pred CCCCcceecCCcccccCCCCCCcccceehHHHHHHHHHHcCCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 76 5999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred --------------------------------------------------CCcccccccccccceEEEecCCCCCCHHHH
Q 018214 240 --------------------------------------------------GGVLNKENAADVKAKFIIEAANHPTDPEAD 269 (359)
Q Consensus 240 --------------------------------------------------~~~I~~~na~~i~akiVvegAN~p~t~ea~ 269 (359)
+|+||++||++|+||+|+||||+|+|++|+
T Consensus 242 ~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~~e~~~~~cDIl~PcA~~n~I~~~na~~l~ak~V~EgAN~P~t~eA~ 321 (411)
T COG0334 242 GIYDEDGLDVEALLELKERRGSVAEYAGAEYITNEELLEVDCDILIPCALENVITEDNADQLKAKIVVEGANGPTTPEAD 321 (411)
T ss_pred ceecCCCCCHHHHHHHhhhhhhHHhhcCceEccccccccccCcEEcccccccccchhhHHHhhhcEEEeccCCCCCHHHH
Confidence 899999999999999999999999999999
Q ss_pred HHHHhCCCeEeccccccccCcchhhHhhhhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 018214 270 EILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRV 349 (359)
Q Consensus 270 ~~L~~rGI~viPD~laNaGGVi~s~~E~~~n~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A~~Rv 349 (359)
++|.+|||+|+||+++|||||++|||||+||.++++|++|+|+++|+++|.++++.+++.++++++++|+|||++|++||
T Consensus 322 ~i~~erGIl~~PD~laNAGGV~vS~~E~~qn~~~~~wt~eev~~kl~~im~~~~~~~~~~~~~~~~~~r~aA~~~a~~Rv 401 (411)
T COG0334 322 EILLERGILVVPDILANAGGVIVSYLEWVQNAQGLYWTEEEVDEKLERIMVNAFEAVYQAAKEYGVDLRTAAYILAFERV 401 (411)
T ss_pred HHHHHCCCEEcChhhccCcCeeeehHHHHhhcccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCC
Q 018214 350 AQATLLRGW 358 (359)
Q Consensus 350 ~~a~~~rg~ 358 (359)
++||+.|||
T Consensus 402 a~Am~~~G~ 410 (411)
T COG0334 402 ADAMKARGW 410 (411)
T ss_pred HHHHHhcCC
Confidence 999999998
No 3
>PRK14030 glutamate dehydrogenase; Provisional
Probab=100.00 E-value=3.9e-114 Score=869.24 Aligned_cols=357 Identities=30% Similarity=0.460 Sum_probs=352.0
Q ss_pred CHHHHHHHHHHHHHHHcCCCHH-----HHHhccCCCeEEEEEEEEEcCCCceeEEEeEEeeecCCCCCCCCCeeeecCCC
Q 018214 2 NALTATNRNFRYAARILGLDSK-----LERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVD 76 (359)
Q Consensus 2 ~~~~~~~~~~~~a~~~~~~~~~-----~~~~l~~p~r~~~~~ip~~~d~g~~~~~~g~rv~h~~~~GPa~GGiR~~~~~t 76 (359)
++|++++++|++|+++++++|+ ++++|++|+|+++|+|||+||||++++|+|||||||+++||+||||||||+++
T Consensus 19 eF~~~~~~~~~~~~~~l~~~~~y~~~~~~~~l~~p~r~i~~~vp~~~d~G~~~~~~GyRvqhn~~lGP~kGGiR~~p~v~ 98 (445)
T PRK14030 19 EYLQAVKEVLLSVEDVYNQHPEFEKAKIIERIVEPDRIFTFRVPWVDDKGEVQVNLGYRVQFNNAIGPYKGGIRFHPSVN 98 (445)
T ss_pred HHHHHHHHHHHHHHHHHccChhhhhhHHHHHhhcCcEEEEEEEEEEECCCcEEEEeeEEEEecCcccCCCCcEEecCCCC
Confidence 4789999999999999999999 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHhhhcCCCCCcceEEeCCCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcCCCCCCCChhhHHHHHHH
Q 018214 77 PDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDE 156 (359)
Q Consensus 77 ~~ev~~LA~~Mt~K~Ala~lp~GGaKggI~~dP~~~s~~e~e~l~r~~~~~l~~~iG~~~di~apDvgt~~~~m~~i~d~ 156 (359)
++|+++||+||||||||++||||||||||.+||+.+|+.|+|+++|+|+++|.++|||+.|||+|||||++++|+||+|+
T Consensus 99 ~~~v~aLa~~MT~K~Al~~lP~GGgKggI~~dP~~~s~~Eler~~r~f~~~L~~~iGp~~DIpApDvgt~~~~M~w~~d~ 178 (445)
T PRK14030 99 LSILKFLGFEQTFKNALTTLPMGGGKGGSDFSPRGKSDAEIMRFCQAFMLELWRHIGPDTDVPAGDIGVGGREVGYMFGM 178 (445)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCceeeecCCCccCCHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhCCCCccccCcccccCCCCCCCchhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHCCCEEEeec
Q 018214 157 YSKFHGHSPAVVTGKPIDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVS 236 (359)
Q Consensus 157 ~~~~~g~~~~~~tGkp~~~GG~~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~~v~VqG~G~VG~~~a~~L~~~Gakvvavs 236 (359)
|+++.++.++++||||+.+|||.+|.++|||||++++++++++.|.+++|+||+||||||||+++|++|++.|+|||+||
T Consensus 179 y~~~~~~~~g~vTGkp~~~gGs~gr~~ATg~Gv~~~~~~~~~~~g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavS 258 (445)
T PRK14030 179 YKKLTREFTGTLTGKGLEFGGSLIRPEATGFGALYFVHQMLETKGIDIKGKTVAISGFGNVAWGAATKATELGAKVVTIS 258 (445)
T ss_pred HHhccCccccEEEccccccCCCCCCCCccHHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence 99999988999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-----------------------------------------------------------CCcccccccccc---cce
Q 018214 237 DIT-----------------------------------------------------------GGVLNKENAADV---KAK 254 (359)
Q Consensus 237 D~~-----------------------------------------------------------~~~I~~~na~~i---~ak 254 (359)
|++ +++||++||++| +||
T Consensus 259 D~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i~~~~~~~~~cDVliPcAl~n~I~~~na~~l~~~~ak 338 (445)
T PRK14030 259 GPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFFAGKKPWEQKVDIALPCATQNELNGEDADKLIKNGVL 338 (445)
T ss_pred cCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEcCCccceeccccEEeeccccccCCHHHHHHHHHcCCe
Confidence 887 899999999999 999
Q ss_pred EEEecCCCCCCHHHHHHHHhCCCeEeccccccccCcchhhHhhhhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 018214 255 FIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHN 334 (359)
Q Consensus 255 iVvegAN~p~t~ea~~~L~~rGI~viPD~laNaGGVi~s~~E~~~n~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~ 334 (359)
+|+||||+|+||+|+++|++|||+|+||+++||||||+|||||+||+++++|++|+|+++|+++|.++|+++++.+++++
T Consensus 339 ~V~EgAN~p~t~eA~~iL~~rGI~~vPD~~aNAGGVivs~~E~~qn~~~~~w~~eeV~~~L~~~m~~~~~~v~~~~~~~~ 418 (445)
T PRK14030 339 CVAEVSNMGCTAEAIDKFIAAKQLFAPGKAVNAGGVATSGLEMSQNAMHLSWSAEEVDEKLHQIMSGIHEQCVKYGKEGD 418 (445)
T ss_pred EEEeCCCCCCCHHHHHHHHHCCCEEeCcceecCCCeeeehhhhhccccccCcCHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --CCHHHHHHHHHHHHHHHHHHHcCC
Q 018214 335 --CNLRMGAFTLGVNRVAQATLLRGW 358 (359)
Q Consensus 335 --~~~r~aA~~~A~~Rv~~a~~~rg~ 358 (359)
+++|+|||++|++||++||..|||
T Consensus 419 ~~~~lr~aA~~~a~~rva~a~~~rG~ 444 (445)
T PRK14030 419 GYINYVKGANIAGFMKVAKAMLAQGV 444 (445)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999997
No 4
>PRK09414 glutamate dehydrogenase; Provisional
Probab=100.00 E-value=1.2e-110 Score=846.18 Aligned_cols=357 Identities=31% Similarity=0.492 Sum_probs=351.3
Q ss_pred CHHHHHHHHHHHHHHHcCCCHH-----HHHhccCCCeEEEEEEEEEcCCCceeEEEeEEeeecCCCCCCCCCeeeecCCC
Q 018214 2 NALTATNRNFRYAARILGLDSK-----LERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVD 76 (359)
Q Consensus 2 ~~~~~~~~~~~~a~~~~~~~~~-----~~~~l~~p~r~~~~~ip~~~d~g~~~~~~g~rv~h~~~~GPa~GGiR~~~~~t 76 (359)
++|++++.+|++|+++|+++|+ ++++|++|+|+++|++||+||||++++|+|||||||+++||+||||||||+++
T Consensus 23 ~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~l~~p~r~i~v~~pv~~d~g~~~~~~gyRv~h~~~~GPakGG~R~~p~v~ 102 (445)
T PRK09414 23 EFHQAVREVLESLWPVLEKNPEYAEAGILERLVEPERVIIFRVPWVDDKGQVQVNRGFRVQFNSAIGPYKGGLRFHPSVN 102 (445)
T ss_pred hHHHHHHHHHHHHHHHhccChhhhhhhHHHHhcCCceEEEEEEEEEECCCcEEEEeeeEEEecCCCcCCCCceeecCCCC
Confidence 5899999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHhhhcCCCCCcceEEeCCCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcCCCCCCCChhhHHHHHHH
Q 018214 77 PDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDE 156 (359)
Q Consensus 77 ~~ev~~LA~~Mt~K~Ala~lp~GGaKggI~~dP~~~s~~e~e~l~r~~~~~l~~~iG~~~di~apDvgt~~~~m~~i~d~ 156 (359)
.+|+.+||++|||||||++||||||||||.+||+++|+.|+|+|+|+|+++|.+++||+.|||+|||||++++|+||+|+
T Consensus 103 ~~ev~aLA~~MT~K~Al~~lP~GGgKggI~~dP~~~s~~Eler~~r~~~~~l~~~iG~~~DipapDvgt~~~~M~~~~d~ 182 (445)
T PRK09414 103 LSILKFLGFEQIFKNALTGLPIGGGKGGSDFDPKGKSDAEIMRFCQSFMTELYRHIGPDTDVPAGDIGVGGREIGYLFGQ 182 (445)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCceeeeecCCccCCHHHHHHHHHHHHHHHHHhcCCCCCcCccccCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhCCCCccccCcccccCCCCCCCchhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHCCCEEEeec
Q 018214 157 YSKFHGHSPAVVTGKPIDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVS 236 (359)
Q Consensus 157 ~~~~~g~~~~~~tGkp~~~GG~~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~~v~VqG~G~VG~~~a~~L~~~Gakvvavs 236 (359)
|+++.++..+++||||+.+|||.+|.++|||||++++++++++.+.+++|+||+||||||||+++|++|++.|+|||+||
T Consensus 183 y~~~~~~~~g~vtGkp~~~gGs~gr~~aTg~Gv~~~~~~~~~~~~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavs 262 (445)
T PRK09414 183 YKRLTNRFEGVLTGKGLSFGGSLIRTEATGYGLVYFAEEMLKARGDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCS 262 (445)
T ss_pred HHhhcCcceEEEecCCcccCCCCCCCCcccHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence 99999887799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-------------------------------------------------------CCcccccccccc---cceEEEe
Q 018214 237 DIT-------------------------------------------------------GGVLNKENAADV---KAKFIIE 258 (359)
Q Consensus 237 D~~-------------------------------------------------------~~~I~~~na~~i---~akiVve 258 (359)
|++ +++||.+|++++ +||+|+|
T Consensus 263 Ds~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~i~~~d~DVliPaAl~n~It~~~a~~i~~~~akiIvE 342 (445)
T PRK09414 263 DSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGSPWSVPCDIALPCATQNELDEEDAKTLIANGVKAVAE 342 (445)
T ss_pred cCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCCccccccCCcEEEecCCcCcCCHHHHHHHHHcCCeEEEc
Confidence 954 899999999999 8999999
Q ss_pred cCCCCCCHHHHHHHHhCCCeEeccccccccCcchhhHhhhhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHcC--CC
Q 018214 259 AANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHN--CN 336 (359)
Q Consensus 259 gAN~p~t~ea~~~L~~rGI~viPD~laNaGGVi~s~~E~~~n~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~--~~ 336 (359)
|||+|+||+|+++|++|||+|+||+++||||||+|||||+||.++++|++++|+++|+++|.++|+++++.+++++ ++
T Consensus 343 gAN~p~t~~A~~~L~~rGI~~vPD~laNaGGVivs~~E~~qn~~~~~w~~~~V~~~l~~~m~~~~~~~~~~~~~~~~~~~ 422 (445)
T PRK09414 343 GANMPSTPEAIEVFLEAGVLFAPGKAANAGGVATSGLEMSQNASRLSWTFEEVDARLHDIMKNIHHACVETAEEYGKPGN 422 (445)
T ss_pred CCCCCCCHHHHHHHHHCCcEEECchhhcCCCeeeeehhhccccccceecHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHHHHHHHcCC
Q 018214 337 LRMGAFTLGVNRVAQATLLRGW 358 (359)
Q Consensus 337 ~r~aA~~~A~~Rv~~a~~~rg~ 358 (359)
||+|||++|++||++||+.|||
T Consensus 423 ~r~aA~~~a~~rv~~a~~~rG~ 444 (445)
T PRK09414 423 YVAGANIAGFVKVADAMLAQGV 444 (445)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999997
No 5
>PRK14031 glutamate dehydrogenase; Provisional
Probab=100.00 E-value=1.8e-108 Score=828.78 Aligned_cols=356 Identities=31% Similarity=0.479 Sum_probs=345.3
Q ss_pred HHHHHHHHHHHHHHHcCCCHHH-----HHhccCCCeEEEEEEEEEcCCCceeEEEeEEeeecCCCCCCCCCeeeecCCCH
Q 018214 3 ALTATNRNFRYAARILGLDSKL-----ERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDP 77 (359)
Q Consensus 3 ~~~~~~~~~~~a~~~~~~~~~~-----~~~l~~p~r~~~~~ip~~~d~g~~~~~~g~rv~h~~~~GPa~GGiR~~~~~t~ 77 (359)
.+|.+...+..-..+++-+|++ +++|++|+|+++|+|||+||||++++|+|||||||+++||+||||||||++|+
T Consensus 20 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~r~~~~~~p~~~d~g~~~~~~gyRvqhn~~lGP~kGGiR~~p~v~~ 99 (444)
T PRK14031 20 YHQAVEEVLSTIEEEYNKHPEFDKANLIERLCIPDRVYQFRVTWVDDKGNVQTNMGYRVQHNNAIGPYKGGIRFHASVNL 99 (444)
T ss_pred HHHHHHHHHHHHHHHHHhChhhhhhhHHHHhhcCceEEEEEEEEEECCCCEEEEeeEEEEecCCCcCCCCCeeecCCCCH
Confidence 4677778888888888888876 55999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHhhhcCCCCCcceEEeCCCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcCCCCCCCChhhHHHHHHHh
Q 018214 78 DEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEY 157 (359)
Q Consensus 78 ~ev~~LA~~Mt~K~Ala~lp~GGaKggI~~dP~~~s~~e~e~l~r~~~~~l~~~iG~~~di~apDvgt~~~~m~~i~d~~ 157 (359)
+|+.+||.+|||||||++||||||||||.+||+++|+.|+||++|+|+++|.++|||+.|||+|||||++++|+||+|+|
T Consensus 100 ~~v~aLa~~MT~K~Al~~lP~GGgKggi~~dP~~~s~~Eler~~r~f~~~L~~~iGp~~dipApDvgt~~~~M~~i~d~y 179 (444)
T PRK14031 100 GILKFLAFEQTFKNSLTTLPMGGGKGGSDFSPRGKSNAEVMRFCQAFMLELWRHIGPETDVPAGDIGVGGREVGFMFGMY 179 (444)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCceeeeeCCCCCCCHHHHHHHHHHHHHHHHhccCCCCccCccccCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhCCCCccccCcccccCCCCCCCchhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHCCCEEEeecC
Q 018214 158 SKFHGHSPAVVTGKPIDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSD 237 (359)
Q Consensus 158 ~~~~g~~~~~~tGkp~~~GG~~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD 237 (359)
+++.++.|+++||||+.+|||.+|.++|||||+++++++++++|.+|+|+||+||||||||+++|++|++.|+|||+|||
T Consensus 180 ~~~~~~~~g~~tgkp~~~GGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD 259 (444)
T PRK14031 180 KKLSHEFTGTFTGKGREFGGSLIRPEATGYGNIYFLMEMLKTKGTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSD 259 (444)
T ss_pred HhhcCCcceEECCCccccCCCCCCCcccHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 99999889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC----------------------------------------------------------CCcccccccccccce---EE
Q 018214 238 IT----------------------------------------------------------GGVLNKENAADVKAK---FI 256 (359)
Q Consensus 238 ~~----------------------------------------------------------~~~I~~~na~~i~ak---iV 256 (359)
++ +++||++||++|+|+ +|
T Consensus 260 ~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i~~d~~~~~~cDIliPaAl~n~I~~~na~~l~a~g~~~V 339 (444)
T PRK14031 260 SDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYVEGARPWGEKGDIALPSATQNELNGDDARQLVANGVIAV 339 (444)
T ss_pred CCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEcCCcccccCCCcEEeecccccccCHHHHHHHHhcCCeEE
Confidence 33 899999999999986 99
Q ss_pred EecCCCCCCHHHHHHHHhCCCeEeccccccccCcchhhHhhhhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHc--C
Q 018214 257 IEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTH--N 334 (359)
Q Consensus 257 vegAN~p~t~ea~~~L~~rGI~viPD~laNaGGVi~s~~E~~~n~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~--~ 334 (359)
+||||+|+||+|+++|++|||+++||+++||||||+|||||+||+++++|++|+|+++|+++|.++|+++++.++++ +
T Consensus 340 ~EgAN~P~t~eA~~~L~~rgI~~~PD~~aNAGGVivs~~E~~qn~~~~~W~~eeV~~~L~~~m~~~~~~v~~~~~~~~~~ 419 (444)
T PRK14031 340 SEGANMPSTPEAIKVFQDAKILYAPGKAANAGGVSVSGLEMTQNSIKLSWSSEEVDEKLKSIMKNIHEACVQYGTEADGY 419 (444)
T ss_pred ECCCCCCCCHHHHHHHHHCCcEEeChhhccCCCeeeehhhhhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988 7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHcCC
Q 018214 335 CNLRMGAFTLGVNRVAQATLLRGW 358 (359)
Q Consensus 335 ~~~r~aA~~~A~~Rv~~a~~~rg~ 358 (359)
+++|+|||++|++||++||+.|||
T Consensus 420 ~~~r~aA~~~a~~rva~a~~~~G~ 443 (444)
T PRK14031 420 VNYVKGANVAGFMKVAKAMMAQGI 443 (444)
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999997
No 6
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=100.00 E-value=1.2e-107 Score=821.45 Aligned_cols=355 Identities=30% Similarity=0.492 Sum_probs=340.1
Q ss_pred HHHHHHHHHHHHHHcCCCHH---HHHhccCCCeEEEEEEEEEcCCCceeEEEeEEeeecCCCCCCCCCeeeecCCCHHHH
Q 018214 4 LTATNRNFRYAARILGLDSK---LERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEV 80 (359)
Q Consensus 4 ~~~~~~~~~~a~~~~~~~~~---~~~~l~~p~r~~~~~ip~~~d~g~~~~~~g~rv~h~~~~GPa~GGiR~~~~~t~~ev 80 (359)
+|.+.+.++.-..+++-+|+ ++++|++|+|.|+|++||+||||++++|+|||||||+++||+||||||||++|++|+
T Consensus 32 ~qa~~e~~~~~~~~~~~~~~y~~i~e~l~~Per~i~~~vp~~~D~G~v~v~~GyRVqhn~alGP~kGGlRfhp~v~~~~v 111 (454)
T PTZ00079 32 LQAFHEVMTSLKPLFQKNPKYLGVLERLVEPERVIQFRVPWVDDKGEQRVNRGFRVQYNSALGPYKGGLRFHPSVNLSIL 111 (454)
T ss_pred HHHHHHHHHHHHHHHHhChhHHHHHHHhccCceEEEEEEEEEECCCCEEEEeeEEEEEcCCCCCCCCCEEeeCCCCHHHH
Confidence 34444445555555555555 578999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHhhhcCCCCCcceEEeCCCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcCCCCCCCChhhHHHHHHHhhhh
Q 018214 81 NALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKF 160 (359)
Q Consensus 81 ~~LA~~Mt~K~Ala~lp~GGaKggI~~dP~~~s~~e~e~l~r~~~~~l~~~iG~~~di~apDvgt~~~~m~~i~d~~~~~ 160 (359)
++||++|||||||++||||||||||.+||+.+|+.|++|+||+|+.+|.++|||++|||+||+||++++|+||+++|+++
T Consensus 112 k~La~~mt~KnAl~gLP~GGgKGGi~~dPk~~s~~El~r~~r~f~~eL~~~IGp~~DvpA~DvGt~~rem~~~~~~y~~~ 191 (454)
T PTZ00079 112 KFLGFEQIFKNSLTTLPMGGGKGGSDFDPKGKSDNEVMRFCQSFMTELYRHIGPDTDVPAGDIGVGGREIGYLFGQYKKL 191 (454)
T ss_pred HHHHHHHHHHHHhcCCCCCCcceeeecCCCCCCHHHHHHHHHHHHHHHHHhcCCCCccchhhcCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCccccCcccccCCCCCCCchhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC-
Q 018214 161 HGHSPAVVTGKPIDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT- 239 (359)
Q Consensus 161 ~g~~~~~~tGkp~~~GG~~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~- 239 (359)
.+..|+++||||+.+|||.+|.++|||||++++++++++++.+++|+||+||||||||+++|++|++.|+|||+|||++
T Consensus 192 ~~~~~gv~TGK~~~~GGs~~r~eATG~Gv~~~~~~~l~~~~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G 271 (454)
T PTZ00079 192 RNNFEGTLTGKNVKWGGSNIRPEATGYGLVYFVLEVLKKLNDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDG 271 (454)
T ss_pred hCCCCceeCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCC
Confidence 9988999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ----------------------------------------------------------CCcccccccccc---cceEEEe
Q 018214 240 ----------------------------------------------------------GGVLNKENAADV---KAKFIIE 258 (359)
Q Consensus 240 ----------------------------------------------------------~~~I~~~na~~i---~akiVve 258 (359)
+++||++||++| +||+|+|
T Consensus 272 ~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~~~~~~~~~~cDI~iPcA~~n~I~~~~a~~l~~~~ak~V~E 351 (454)
T PTZ00079 272 YIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYVPGKKPWEVPCDIAFPCATQNEINLEDAKLLIKNGCKLVAE 351 (454)
T ss_pred cEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEeCCcCcccCCccEEEeccccccCCHHHHHHHHHcCCeEEEe
Confidence 899999999988 9999999
Q ss_pred cCCCCCCHHHHHHHHhCCCeEeccccccccCcchhhHhhhhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHc--CCC
Q 018214 259 AANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTH--NCN 336 (359)
Q Consensus 259 gAN~p~t~ea~~~L~~rGI~viPD~laNaGGVi~s~~E~~~n~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~--~~~ 336 (359)
|||+|+|++|+++|++|||+|+||+++|||||++|||||+||+++++|++|+|+++|+++|.++|+++++.++++ +.+
T Consensus 352 gAN~p~t~eA~~~L~~~GI~~~PD~~aNAGGV~vS~~E~~Qn~~~~~W~~eeV~~~L~~~M~~~~~~~~~~a~~~~~~~~ 431 (454)
T PTZ00079 352 GANMPTTIEATHLFKKNGVIFCPGKAANAGGVAISGLEMSQNAARLQWTAEEVDEKLREIMKSIFEACVKYAEKYGGKSD 431 (454)
T ss_pred cCCCCCCHHHHHHHHHCCcEEEChhhhcCCCeeeehHHhhhhhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998 589
Q ss_pred HHHHHHHHHHHHHHHHHHHcCC
Q 018214 337 LRMGAFTLGVNRVAQATLLRGW 358 (359)
Q Consensus 337 ~r~aA~~~A~~Rv~~a~~~rg~ 358 (359)
+|+|||++|++||++||..|||
T Consensus 432 ~r~~A~i~~~~rva~Am~~~G~ 453 (454)
T PTZ00079 432 LVAGANIAGFLKVADSMIEQGC 453 (454)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999997
No 7
>KOG2250 consensus Glutamate/leucine/phenylalanine/valine dehydrogenases [Amino acid transport and metabolism]
Probab=100.00 E-value=7.2e-91 Score=692.18 Aligned_cols=336 Identities=52% Similarity=0.813 Sum_probs=320.1
Q ss_pred HHHHhccCCCeEEEEEEEEEcCCCceeEEEeEEeeecCCCCCCCCCeeeecCCCHHHHHHHHHHhHHHHhhhcCCCCCcc
Q 018214 23 KLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAK 102 (359)
Q Consensus 23 ~~~~~l~~p~r~~~~~ip~~~d~g~~~~~~g~rv~h~~~~GPa~GGiR~~~~~t~~ev~~LA~~Mt~K~Ala~lp~GGaK 102 (359)
.++.+|..|+|+++|++||.+|+|+.++++||||||+.++||+||||||||++++|++++||+.||||||++++|+||||
T Consensus 66 ~Il~~l~p~~~~i~~~~p~~~d~G~~~V~~gfRvqh~~argP~KGGIR~hpsvn~d~~k~La~~~t~K~A~tdiP~GGaK 145 (514)
T KOG2250|consen 66 AILFRLDPPERVIKFRVPIPRDDGEFEVINGFRVQHNRARGPAKGGIRYHPSVNLDIVKALAFLMTYKNALTDIPYGGAK 145 (514)
T ss_pred hhhhhcCccceeEEEEeceecCCceEEEeechhhhhhhccCcccCceEeCCcCCHHHHHHHHHHHHHHhhccCCCCCCCc
Confidence 35668889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeCCCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcCCCCCCCChhhHHHHHHHhhhhhCCCCccccCcccccCCCCCCC
Q 018214 103 GGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGRE 182 (359)
Q Consensus 103 ggI~~dP~~~s~~e~e~l~r~~~~~l~~~iG~~~di~apDvgt~~~~m~~i~d~~~~~~g~~~~~~tGkp~~~GG~~~r~ 182 (359)
|||.+||+.+|..|+|++||+|+++|.+++||.+|+|+|||||++++|.|++++|++.+|++++++||||+.+|||++|.
T Consensus 146 GGi~~dPk~~s~nEi~r~~~~f~~el~~~iGp~~DvPapdig~G~rEm~~if~~Ya~~~g~~~a~vTGK~i~~GGs~~R~ 225 (514)
T KOG2250|consen 146 GGILIDPKGKSDNEIERITRRFTDELIDIIGPDTDVPAPDIGTGPREMGWIFDEYAKTHGHWKAVVTGKPISLGGSHGRY 225 (514)
T ss_pred CccccCccccchHHHHHHHHHHHHHHHHHcCCCCCCCccccccCcchhhhhHHHHHHhhcccceeeeCCCCccCCccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHhC--CCCCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC---------------------
Q 018214 183 AATGLGVFFATEALLAEHG--KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT--------------------- 239 (359)
Q Consensus 183 ~aTg~Gv~~~~~~~~~~~g--~~l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~--------------------- 239 (359)
+||||||+++++.++++.+ .+++|+||+||||||||++++++|++.|++||+|+|++
T Consensus 226 ~ATG~GV~~y~e~~~~~~~~~~~~kgkr~~i~G~Gnv~~~aa~~l~~~G~kvvavsD~~G~l~np~Gid~~eL~~~~~~k 305 (514)
T KOG2250|consen 226 EATGRGVVYYVEAILNDANGKKGIKGKRVVIQGFGNVGGHAAKKLSEKGAKVVAVSDSKGVLINPDGIDIEELLDLADEK 305 (514)
T ss_pred cccchhHHHHHHHHHHhccCCCCcCceEEEEeCCCchHHHHHHHHHhcCCEEEEEEcCceeEECCCCCCHHHHHHHHHhh
Confidence 9999999999999999887 56999999999999999999999999999999999998
Q ss_pred -------------------------------------CCcccccccccccce---EEEecCCCCCCHHHHHHHHhCCCeE
Q 018214 240 -------------------------------------GGVLNKENAADVKAK---FIIEAANHPTDPEADEILSKKGVVI 279 (359)
Q Consensus 240 -------------------------------------~~~I~~~na~~i~ak---iVvegAN~p~t~ea~~~L~~rGI~v 279 (359)
+++||.+||.++.++ +|+||||+|+||||+++|.++|+++
T Consensus 306 ~~i~~f~~~~~~~~~~~~~~~~~~~v~~~DI~vPCA~qn~I~~~nA~~lvak~~~~IvEGAN~ptTpeA~~vlek~gv~i 385 (514)
T KOG2250|consen 306 KTIKSFDGAKLSYEGYIAGLPPWTLVEKCDILVPCATQNEITGENAKALVAKGCKYIVEGANMPTTPEADEVLEKAGVLI 385 (514)
T ss_pred ccccccccccccCccccccCcchhhHhhCcEEeecCccCcccHhhHHHHHhcCCcEEEecCCCCCChhHHHHHHhCCeEE
Confidence 899999999999766 9999999999999999999999999
Q ss_pred eccccccccCcchhhHhhhhccc-------ccccCHHHHHHHHHHHHHHHHHHH----HHHHHHcC--------CCHHHH
Q 018214 280 LPDIYANSGGVTVSYFEWVQNIQ-------GFMWEEEKVNHELKRYMMSAFKDI----KTMCQTHN--------CNLRMG 340 (359)
Q Consensus 280 iPD~laNaGGVi~s~~E~~~n~~-------~~~w~~e~v~~~l~~~m~~~~~~v----~~~a~~~~--------~~~r~a 340 (359)
+||..||+|||++|||||+||++ .+.|++|.|...|..+|...++.. ++.+++++ .+++..
T Consensus 386 ~Pd~~aNaGGVtvS~~E~l~nl~~~s~g~~~~~~~~e~v~~~L~~v~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~lv~g 465 (514)
T KOG2250|consen 386 IPDIYANAGGVTVSYFEWLQNLNHVSYGKLTFKWTEEKVDSLLASVQENLSRKQGKANLEPAAEFKDRIQGTSEKDLVHG 465 (514)
T ss_pred echhhccCCCeeeeHHHHHHhcccccccceeEEeehhhHHHHHHHHHHHHHHhccCcccchHHHhhhhhcCCCchHHhhh
Confidence 99999999999999999999999 689999999999999888888777 65554422 488999
Q ss_pred HHHHHHHHHHHHHHHcCC
Q 018214 341 AFTLGVNRVAQATLLRGW 358 (359)
Q Consensus 341 A~~~A~~Rv~~a~~~rg~ 358 (359)
|.+.++.|+++||..+|+
T Consensus 466 al~~~~~kva~ai~~~g~ 483 (514)
T KOG2250|consen 466 ALIATFNKVARAITDQGD 483 (514)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 999999999999988874
No 8
>PTZ00324 glutamate dehydrogenase 2; Provisional
Probab=100.00 E-value=1.6e-70 Score=588.23 Aligned_cols=316 Identities=24% Similarity=0.255 Sum_probs=300.0
Q ss_pred HcCCCHHHHHhccCCCeEEEEEEEEEcCCCceeEEEeEEeeecCCCCCCCCCeeeecC-----------CCHHHHHHHHH
Q 018214 17 ILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPE-----------VDPDEVNALAQ 85 (359)
Q Consensus 17 ~~~~~~~~~~~l~~p~r~~~~~ip~~~d~g~~~~~~g~rv~h~~~~GPa~GGiR~~~~-----------~t~~ev~~LA~ 85 (359)
-++++|++++.|.+|++.+.+.+|+ | +.|+|||++|+.+ ++||+||||+ ++++|+++||+
T Consensus 458 sFrldp~~l~~l~~P~~p~~v~fv~----G--~~f~G~hvR~~di---ARGGiR~~~s~~~edy~tn~~~~~dEv~~LA~ 528 (1002)
T PTZ00324 458 AFRLDPSFLSELEYPRVPYGVFLVA----G--AQFRGFHIRFTDI---ARGGVRMIQSFKEQAYRRNKRSVFDENYNLAS 528 (1002)
T ss_pred EEeCCHHHHhhcCCCCceEEEEEEE----C--CcEEEEEEecCCc---ccceeEEecCcchhhhhhcccCcHHHHHHHHH
Confidence 3589999999999999999999999 5 7899999999998 9999999998 88999999999
Q ss_pred HhHHHHhhhcCCCCCcceEEeCCCCCCCH---HHHHHHHHHHHHHHHhhcCCCCCc-----------CCCCCCCChhhHH
Q 018214 86 LMTWKTAVAAIPYGGAKGGIGCNPRELSM---SELERLTRVFTQKIHDLIGIHRDV-----------PAPDMGTNSQTMA 151 (359)
Q Consensus 86 ~Mt~K~Ala~lp~GGaKggI~~dP~~~s~---~e~e~l~r~~~~~l~~~iG~~~di-----------~apDvgt~~~~m~ 151 (359)
||||||| +||+|||||||.+||+.+++ .|+|+++|+|++.|.+++||..|| ||||+||+++.|+
T Consensus 529 tqt~KNa--dIP~GGaKGgi~vdp~~~~~~~~~e~er~~r~yi~aLlDli~p~~dIVd~~~~de~l~~aPD~ntta~~md 606 (1002)
T PTZ00324 529 TQLLKNK--DIPEGGSKGTILLSSRYLNKFAQVRCQHAFLQYIDALLDVMLPGEKVVDHLKQEEIIFLGPDEHTTGTLMD 606 (1002)
T ss_pred HHHHhcC--CCCCCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHhcCCCcccccccCCccccccCCCCCCCHHHHH
Confidence 9999999 99999999999999998887 889999999999999999999999 9999999999999
Q ss_pred HHHHHhhhhhCCC--CccccCcccccCCCCCCC-chhHHHHHHHHHHHHHHhCCCCCCCEEEEEe--ccchHHHHHHHHH
Q 018214 152 WILDEYSKFHGHS--PAVVTGKPIDLGGSLGRE-AATGLGVFFATEALLAEHGKSISNMKFAIQG--FGNVGSWAAKFFH 226 (359)
Q Consensus 152 ~i~d~~~~~~g~~--~~~~tGkp~~~GG~~~r~-~aTg~Gv~~~~~~~~~~~g~~l~g~~v~VqG--~G~VG~~~a~~L~ 226 (359)
|| ++|++.+|+. ++++||||..+||+.++. ++||+||+.+++++++++|+++++.||++|| +|+||++.++++.
T Consensus 607 wa-~~~s~~rG~~~~~af~TGKp~~lGG~~hk~yG~T~rGv~~~v~~~~~~lgid~~~~Tv~~~Ggp~GDVGgN~~lls~ 685 (1002)
T PTZ00324 607 WA-ALHAKKRGYPFWKSFTTGKSPSMGGIPHDTYGMTTRSVRAYVTGILEKLGLNEEEVTKFQTGGPDGDLGSNELLLSK 685 (1002)
T ss_pred HH-HHHHHHcCCCCCCCEEeCCCcccCCcCCCcCcccchhHHHHHHHHHHHcCCCccCCEEEEECCCCchHHHHHHHHhC
Confidence 99 8999999974 899999999999999987 9999999999999999999999999999999 9999999998764
Q ss_pred HCCCEEEeecCCC-------------------------------------------------------------------
Q 018214 227 EHGGKVVAVSDIT------------------------------------------------------------------- 239 (359)
Q Consensus 227 ~~GakvvavsD~~------------------------------------------------------------------- 239 (359)
+|+|||+|.+
T Consensus 686 ---~klVAv~D~~G~~~DP~GLd~~EL~rl~~~~~s~~~yd~~~lS~gG~~~~r~~k~i~l~~~~~i~~g~~~~~~~~l~ 762 (1002)
T PTZ00324 686 ---EKTVGIVDGSGVLHDPEGLNREELRRLAHHRLPAREFDESKLSPQGFLVLTDDRDVKLPDGTIVESGLRFRNEFHLL 762 (1002)
T ss_pred ---CEEEEEEcCCCEEECCCCCCHHHHHHHHHcCCCcccCchhhccCCCceeecccccccCCccceeccccccchhhccc
Confidence 7999999987
Q ss_pred --------------CCccccccc--------ccccceEEEecCCCCCCHHHHHHHHhCCCeEeccccccccCcchhhHhh
Q 018214 240 --------------GGVLNKENA--------ADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEW 297 (359)
Q Consensus 240 --------------~~~I~~~na--------~~i~akiVvegAN~p~t~ea~~~L~~rGI~viPD~laNaGGVi~s~~E~ 297 (359)
+++||++|+ .+++||+|+||||+|+||+|+.+|++|||+++||+++|+|||++|||||
T Consensus 763 ~~~~vDlliPaggr~~~I~~~Na~~~~~~~~~~irakvIvEGANlpiT~eAr~~L~~~Gv~IipD~laNsGGV~~S~~Ev 842 (1002)
T PTZ00324 763 PYSDADVFVPCGGRPRSVTLFNVGRFFDEKNGKLRFKIIVEGANLFITQDARLALEECGVILFKDASANKGGVTSSSLEV 842 (1002)
T ss_pred cCCCccEEEECCCCcCccCHHHHhhhhhccccCceeEEEEECCCCCCCHHHHHHHHHCCCEEcCcchhcCCCcEeeHHHH
Confidence 456888888 7899999999999999999999999999999999999999999999999
Q ss_pred hhccc------------------ccccC--HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 018214 298 VQNIQ------------------GFMWE--EEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVN 347 (359)
Q Consensus 298 ~~n~~------------------~~~w~--~e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A~~ 347 (359)
+||++ +.+|+ .++|+++|++.|...|+.||+.+++.++++|++|..+..+
T Consensus 843 l~~l~l~d~ef~~~m~~~~~~~~~~f~~~yv~eV~~~L~~~a~~ef~~i~~~~~~~~~~~r~asd~lS~~ 912 (1002)
T PTZ00324 843 LAALALSDEEFAEHMCVKDATDAPEFYKKYVKEILDRIEENARLEFNAIWREELRTGKPRCLLADVLSRK 912 (1002)
T ss_pred HhccccchhhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 99998 78899 8999999999999999999999999999999999988643
No 9
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=100.00 E-value=2.3e-58 Score=436.39 Aligned_cols=190 Identities=36% Similarity=0.512 Sum_probs=186.5
Q ss_pred cCcccccCCCCCCCchhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC---------
Q 018214 169 TGKPIDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT--------- 239 (359)
Q Consensus 169 tGkp~~~GG~~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~--------- 239 (359)
||||+.+|||.||+++|||||++++++++++++.+++|+||+||||||||+++|++|++.|+|||+|||++
T Consensus 1 TGKp~~~GGs~gR~~aTg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gl 80 (254)
T cd05313 1 TGKGLSWGGSLIRPEATGYGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGF 80 (254)
T ss_pred CCCCCcCCCCCCCCchhHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999954
Q ss_pred --------------------------------------------------CCcccccccccc---cceEEEecCCCCCCH
Q 018214 240 --------------------------------------------------GGVLNKENAADV---KAKFIIEAANHPTDP 266 (359)
Q Consensus 240 --------------------------------------------------~~~I~~~na~~i---~akiVvegAN~p~t~ 266 (359)
+++||++|+++| +||+|+||||+|+||
T Consensus 81 d~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~~~~~~~~~~DIliPcAl~~~I~~~na~~i~~~~ak~I~EgAN~p~t~ 160 (254)
T cd05313 81 TGEKLAELKEIKEVRRGRVSEYAKKYGTAKYFEGKKPWEVPCDIAFPCATQNEVDAEDAKLLVKNGCKYVAEGANMPCTA 160 (254)
T ss_pred CHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEeCCcchhcCCCcEEEeccccccCCHHHHHHHHHcCCEEEEeCCCCCCCH
Confidence 899999999999 899999999999999
Q ss_pred HHHHHHHhCCCeEeccccccccCcchhhHhhhhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHH
Q 018214 267 EADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHN--CNLRMGAFTL 344 (359)
Q Consensus 267 ea~~~L~~rGI~viPD~laNaGGVi~s~~E~~~n~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~--~~~r~aA~~~ 344 (359)
+|+++|++|||+|+||+++||||||+|||||+||+++++|++|+|+++|+++|.++|+++++++++++ ++||+|||++
T Consensus 161 ~a~~~L~~rGI~vvPD~laNaGGVivs~~E~~qn~~~~~w~~e~V~~~l~~~m~~~~~~v~~~a~~~~~~~~lr~aA~~~ 240 (254)
T cd05313 161 EAIEVFRQAGVLFAPGKAANAGGVAVSGLEMSQNSQRLSWTAEEVDAKLKDIMKNIHDACAETAKKYGDPPDLVAGANIA 240 (254)
T ss_pred HHHHHHHHCCcEEECchhhcCCCeeeeHHHhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 8999999999
Q ss_pred HHHHHHHHHHHcCC
Q 018214 345 GVNRVAQATLLRGW 358 (359)
Q Consensus 345 A~~Rv~~a~~~rg~ 358 (359)
|++||++||+.||+
T Consensus 241 a~~rv~~a~~~rG~ 254 (254)
T cd05313 241 GFLKVADAMLAQGV 254 (254)
T ss_pred HHHHHHHHHHhcCC
Confidence 99999999999996
No 10
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=100.00 E-value=5.3e-51 Score=385.24 Aligned_cols=182 Identities=52% Similarity=0.837 Sum_probs=174.9
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHhCCC-CCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC---------------
Q 018214 176 GGSLGREAATGLGVFFATEALLAEHGKS-ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT--------------- 239 (359)
Q Consensus 176 GG~~~r~~aTg~Gv~~~~~~~~~~~g~~-l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~--------------- 239 (359)
|||.+|.++|||||++++++++++++.+ ++|+||+|||||+||+++|++|+++|++||+|||++
T Consensus 1 GGs~~~~~aTg~GV~~~~~~~~~~~~~~~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~ 80 (244)
T PF00208_consen 1 GGSGGRSEATGYGVAYAIEAALEHLGGDSLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELL 80 (244)
T ss_dssp TCHTTTTTHHHHHHHHHHHHHHHHTTCHSSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHH
T ss_pred CCCCCCCcchHHHHHHHHHHHHHHcCCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHH
Confidence 7999999999999999999999998776 999999999999999999999999999999999877
Q ss_pred -------------------------------------------CCcccccccc-ccc--ceEEEecCCCCCCHHHHHHHH
Q 018214 240 -------------------------------------------GGVLNKENAA-DVK--AKFIIEAANHPTDPEADEILS 273 (359)
Q Consensus 240 -------------------------------------------~~~I~~~na~-~i~--akiVvegAN~p~t~ea~~~L~ 273 (359)
+++||++|++ .|+ ||+||||||+|+||+|+++|+
T Consensus 81 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~il~~~~DiliP~A~~~~I~~~~~~~~i~~~akiIvegAN~p~t~~a~~~L~ 160 (244)
T PF00208_consen 81 RIKEERGSRVDDYPLESPDGAEYIPNDDEILSVDCDILIPCALGNVINEDNAPSLIKSGAKIIVEGANGPLTPEADEILR 160 (244)
T ss_dssp HHHHHHSSHSTTGTHTCSSTSEEECHHCHGGTSSSSEEEEESSSTSBSCHHHCHCHHTT-SEEEESSSSSBSHHHHHHHH
T ss_pred HHHHHhCCcccccccccccceeEeccccccccccccEEEEcCCCCeeCHHHHHHHHhccCcEEEeCcchhccHHHHHHHH
Confidence 7889999999 999 999999999999999999999
Q ss_pred hCCCeEeccccccccCcchhhHhhhhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q 018214 274 KKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQAT 353 (359)
Q Consensus 274 ~rGI~viPD~laNaGGVi~s~~E~~~n~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A~~Rv~~a~ 353 (359)
+|||+|+||+++|+||||+||+||+||+++++|++++|.++++++|.+++++|++.|++++++||+|||++|++||++||
T Consensus 161 ~rGI~viPD~~aNaGGvi~s~~E~~~~~~~~~~~~~~v~~~l~~~m~~~~~~v~~~a~~~~~~~~~aA~~~A~~rv~~a~ 240 (244)
T PF00208_consen 161 ERGILVIPDFLANAGGVIVSYFEWLQNLQGLFWTEEEVFEKLEEIMDRAFKRVLERAEEEGISLRQAAYILAFERVAAAM 240 (244)
T ss_dssp HTT-EEE-HHHHTTHHHHHHHHHHHHHHHTSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHH
T ss_pred HCCCEEEcchhhcCCCeEeehhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcC
Q 018214 354 LLRG 357 (359)
Q Consensus 354 ~~rg 357 (359)
+.||
T Consensus 241 ~~rG 244 (244)
T PF00208_consen 241 KLRG 244 (244)
T ss_dssp HHTT
T ss_pred HhcC
Confidence 9998
No 11
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=100.00 E-value=7.7e-48 Score=360.20 Aligned_cols=175 Identities=55% Similarity=0.891 Sum_probs=171.5
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC----------------
Q 018214 176 GGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT---------------- 239 (359)
Q Consensus 176 GG~~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~---------------- 239 (359)
|||.+|+++|||||++++++++++++.+++++||+|||||+||+++|++|.+.|++||+|+|++
T Consensus 1 gG~~~~~~~Tg~Gv~~~~~~~~~~~~~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~ 80 (227)
T cd01076 1 GGSLGREEATGRGVAYATREALKKLGIGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLA 80 (227)
T ss_pred CCCCCCCccchHHHHHHHHHHHHhcCCCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHH
Confidence 7999999999999999999999998888999999999999999999999999999999999984
Q ss_pred -----------------------------------CCcccccccccccceEEEecCCCCCCHHHHHHHHhCCCeEecccc
Q 018214 240 -----------------------------------GGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIY 284 (359)
Q Consensus 240 -----------------------------------~~~I~~~na~~i~akiVvegAN~p~t~ea~~~L~~rGI~viPD~l 284 (359)
+++||++|+++++||+|+||||+|+||+|+++|++|||+|+||++
T Consensus 81 ~~~~~g~l~~~~~~~~~~~~~i~~~~~Dvlip~a~~~~i~~~~~~~l~a~~I~egAN~~~t~~a~~~L~~rGi~~~PD~~ 160 (227)
T cd01076 81 YKKEHGSVLGFPGAERITNEELLELDCDILIPAALENQITADNADRIKAKIIVEAANGPTTPEADEILHERGVLVVPDIL 160 (227)
T ss_pred HHHhcCCcccCCCceecCCccceeecccEEEecCccCccCHHHHhhceeeEEEeCCCCCCCHHHHHHHHHCCCEEEChHH
Confidence 899999999999999999999999999999999999999999999
Q ss_pred ccccCcchhhHhhhhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 018214 285 ANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVA 350 (359)
Q Consensus 285 aNaGGVi~s~~E~~~n~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A~~Rv~ 350 (359)
+|+||||+||+||+||++++.|++++|.+++++.|.+++.++++.+++++++|+++||++|++||+
T Consensus 161 aNaGGvi~s~~E~~~~~~~~~~~~~~v~~~l~~~i~~~~~~v~~~a~~~~~~~~~aA~~~a~~rl~ 226 (227)
T cd01076 161 ANAGGVTVSYFEWVQNLQGFYWDEEEVNSRLETKMREAFEAVLETAEKYGVDLRTAAYVLALERVA 226 (227)
T ss_pred hcCcchhhhHHHHhhhhccCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999999986
No 12
>PF02812 ELFV_dehydrog_N: Glu/Leu/Phe/Val dehydrogenase, dimerisation domain; InterPro: IPR006097 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the dimerisation region of these enzymes.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 2BMA_C 1C1D_B 1BXG_A 1BW9_B 1C1X_A 2YFQ_B 3R3J_D 1V9L_C 1B26_C 2TMG_B ....
Probab=100.00 E-value=7e-48 Score=332.03 Aligned_cols=130 Identities=52% Similarity=0.895 Sum_probs=124.4
Q ss_pred CCeEEEEEEEEEcCCCceeEEEeEEeeecCCCCCCCCCeeeecCCCHHHHHHHHHHhHHHHhhhcCCCCCcceEEeCCCC
Q 018214 31 PFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPR 110 (359)
Q Consensus 31 p~r~~~~~ip~~~d~g~~~~~~g~rv~h~~~~GPa~GGiR~~~~~t~~ev~~LA~~Mt~K~Ala~lp~GGaKggI~~dP~ 110 (359)
|+|+++|++||+||||+.+.|+|||||||+++||++|||||||++|.+|+++||++|||||||++||||||||||.+||+
T Consensus 1 pe~v~~~~~~~~~d~g~~~~~~g~~v~h~~~~GPa~GGiR~~~~~s~~ev~~LA~~MT~K~Al~~lp~GGaKggI~~dp~ 80 (131)
T PF02812_consen 1 PERVIQVRVPVVMDDGPITGLRGYRVQHSTARGPAKGGIRMHPYVSEEEVLRLARGMTYKCALAGLPFGGAKGGIKIDPK 80 (131)
T ss_dssp -SEEEEEEEEEEETTSCEEEEEEEEEEEE-SSSSEEEEEEEETTSSHHHHHHHHHHHHHHHHHTTSS-EEEEEEEESSGG
T ss_pred CCEEEEEEEEEEeCCCCEEEEEEEEEEEcCCCCCCCCCeEEecCCCHHHHHHHHHHHHhhhhhccCCCCceeEEeecCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcCCCCCcCCCCCCCChhhHHHHHHHhhhh
Q 018214 111 ELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKF 160 (359)
Q Consensus 111 ~~s~~e~e~l~r~~~~~l~~~iG~~~di~apDvgt~~~~m~~i~d~~~~~ 160 (359)
++|+.|+|+++|+|+++|.+++++..|||+|||||+++||+||+++|+++
T Consensus 81 ~~s~~e~e~l~r~f~~~l~~~i~~~~~i~a~Dvgt~~~dm~~i~~~~~~~ 130 (131)
T PF02812_consen 81 DLSDNERERLTRRFGRALSPFIGPGRDIPAPDVGTGERDMAWIADEYRRV 130 (131)
T ss_dssp GS-HHHHHHHHHHHHHHHGGGSBTTTEEEEBBTTBSHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHhccCcEEECCcCCCCHHHHHHHHHhchhc
Confidence 99999999999999999999999999999999999999999999999864
No 13
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=100.00 E-value=4.1e-47 Score=353.09 Aligned_cols=167 Identities=44% Similarity=0.703 Sum_probs=163.6
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC------------------------
Q 018214 184 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT------------------------ 239 (359)
Q Consensus 184 aTg~Gv~~~~~~~~~~~g~~l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~------------------------ 239 (359)
+|||||++++++++++++.+++|+||+||||||||+++|++|++.|+++|+|||++
T Consensus 1 aTg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~ 80 (217)
T cd05211 1 ATGYGVVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSA 80 (217)
T ss_pred CchhHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCcc
Confidence 69999999999999999989999999999999999999999999999999999977
Q ss_pred --------------------------CCcccccccccccceEEEecCCCCCCHHHHHHHHhCCCeEeccccccccCcchh
Q 018214 240 --------------------------GGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVS 293 (359)
Q Consensus 240 --------------------------~~~I~~~na~~i~akiVvegAN~p~t~ea~~~L~~rGI~viPD~laNaGGVi~s 293 (359)
+++||.+|+.+++||+|+|+||+|+|++++++|++|||+|+||+++|+|||++|
T Consensus 81 ~~~~~~~~~~~~l~~~~~DVlipaA~~~~i~~~~a~~l~a~~V~e~AN~p~t~~a~~~L~~~Gi~v~Pd~~~NaGGvi~s 160 (217)
T cd05211 81 RVKVQDYFPGEAILGLDVDIFAPCALGNVIDLENAKKLKAKVVAEGANNPTTDEALRILHERGIVVAPDIVANAGGVIVS 160 (217)
T ss_pred ccCcccccCcccceeccccEEeeccccCccChhhHhhcCccEEEeCCCCCCCHHHHHHHHHCCcEEEChHHhcCCCeEeE
Confidence 888999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 018214 294 YFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVA 350 (359)
Q Consensus 294 ~~E~~~n~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A~~Rv~ 350 (359)
||||+||.++++|++++|.++++++|.+++++|++.|+++++|||+|||++|++||+
T Consensus 161 ~~E~~q~~~~~~w~~~~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~a~~rva 217 (217)
T cd05211 161 YFEWVQNLQRLSWDAEEVRSKLEQVMTDIHNGVFAISERDGVTMRAAANILAFERIA 217 (217)
T ss_pred HHHhcCCccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999984
No 14
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=100.00 E-value=2e-39 Score=297.88 Aligned_cols=161 Identities=28% Similarity=0.422 Sum_probs=153.0
Q ss_pred CchhHHHHHHHHHHHHHHh--CCCCCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC--------------------
Q 018214 182 EAATGLGVFFATEALLAEH--GKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT-------------------- 239 (359)
Q Consensus 182 ~~aTg~Gv~~~~~~~~~~~--g~~l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~-------------------- 239 (359)
+.+|||||+++++++++++ +.+++|++|+|||||+||+++|+.|++.|++|+ ++|.+
T Consensus 2 s~aTg~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vv-v~D~~~~~~~~~~~~~g~~~v~~~~ 80 (200)
T cd01075 2 SPPTAYGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLI-VADINEEAVARAAELFGATVVAPEE 80 (200)
T ss_pred CChhHHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEcCCHHHHHHHHHHcCCEEEcchh
Confidence 5789999999999999976 778999999999999999999999999999999 88877
Q ss_pred --------------CCcccccccccccceEEEecCCCCCC-HHHHHHHHhCCCeEeccccccccCcchhhHhhhhccccc
Q 018214 240 --------------GGVLNKENAADVKAKFIIEAANHPTD-PEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGF 304 (359)
Q Consensus 240 --------------~~~I~~~na~~i~akiVvegAN~p~t-~ea~~~L~~rGI~viPD~laNaGGVi~s~~E~~~n~~~~ 304 (359)
+++||++|+++++||+|+|+||+|+| ++++++|++|||+|+||+++|+|||++||+||+|+.
T Consensus 81 l~~~~~Dv~vp~A~~~~I~~~~~~~l~~~~v~~~AN~~~~~~~~~~~L~~~Gi~~~Pd~~~NaGGv~~~~~e~~~~~--- 157 (200)
T cd01075 81 IYSVDADVFAPCALGGVINDDTIPQLKAKAIAGAANNQLADPRHGQMLHERGILYAPDYVVNAGGLINVADELYGGN--- 157 (200)
T ss_pred hccccCCEEEecccccccCHHHHHHcCCCEEEECCcCccCCHhHHHHHHHCCCEEeCceeeeCcCceeehhHHhCCc---
Confidence 78999999999999999999999998 999999999999999999999999999999999863
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 018214 305 MWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVA 350 (359)
Q Consensus 305 ~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A~~Rv~ 350 (359)
++++.++++.+ .+++.+|++.|++++++||+|||.+|++||.
T Consensus 158 ---~~~~~~~~~~~-~~~~~~v~~~a~~~~~~~~~aA~~~a~~r~~ 199 (200)
T cd01075 158 ---EARVLAKVEAI-YDTLLEIFAQAKQDGITTLEAADRMAEERIA 199 (200)
T ss_pred ---HHHHHHHHHHH-HHHHHHHHHHHHHhCcCHHHHHHHHHHHHhc
Confidence 67899999988 8999999999999999999999999999985
No 15
>smart00839 ELFV_dehydrog Glutamate/Leucine/Phenylalanine/Valine dehydrogenase. Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction.
Probab=99.93 E-value=7.8e-26 Score=187.23 Aligned_cols=91 Identities=41% Similarity=0.559 Sum_probs=87.2
Q ss_pred CCcccccccccccceEEEecCCCCCCHHHHHHHHhCCCeEeccccccccCcchhhHhhhhcccccccCHHHHHHHHHHHH
Q 018214 240 GGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYM 319 (359)
Q Consensus 240 ~~~I~~~na~~i~akiVvegAN~p~t~ea~~~L~~rGI~viPD~laNaGGVi~s~~E~~~n~~~~~w~~e~v~~~l~~~m 319 (359)
+++||++|+++++||+|+||||+|+|++++++|++|||+|+||+++|+||||+||+||.|+.++ ++|++.+++.++|
T Consensus 12 ~~~I~~~~a~~l~a~~V~egAN~~~t~~a~~~L~~rGi~~~PD~~~NaGGvi~s~~E~~~~~~~---~~e~v~~~~~~~i 88 (102)
T smart00839 12 QNVINEANANRLGAKIIAEGANMPLTDEADDILEDRGVLYAPDFAANAGGVIVSALEMLQNLAR---TAEEVFTDLSEIM 88 (102)
T ss_pred cCcCCHHHHHHcCCeEEEecCCCCCCHHHHHHHHHCCCEEcCcceecCCCEEeehhhhhcccCC---CHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999998774 8899999999999
Q ss_pred HHHHHHHHHHHHHc
Q 018214 320 MSAFKDIKTMCQTH 333 (359)
Q Consensus 320 ~~~~~~v~~~a~~~ 333 (359)
.+++.++++.|+++
T Consensus 89 ~~~~~~v~~~a~~~ 102 (102)
T smart00839 89 RNALEEIFETAQKY 102 (102)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999763
No 16
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=99.92 E-value=7.9e-24 Score=237.95 Aligned_cols=262 Identities=23% Similarity=0.250 Sum_probs=200.1
Q ss_pred cCCCHHHHHhccCCCeEEEEEEEEEcCCCceeEEEeEEeeecCCCCCCCCCeeeecC--CCHHHHHHHHHHhHHHHhhhc
Q 018214 18 LGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPE--VDPDEVNALAQLMTWKTAVAA 95 (359)
Q Consensus 18 ~~~~~~~~~~l~~p~r~~~~~ip~~~d~g~~~~~~g~rv~h~~~~GPa~GGiR~~~~--~t~~ev~~LA~~Mt~K~Ala~ 95 (359)
+.++|..+.-+.+|....++. |. ...|+|++..+... |+||+||+.. .-.+||+.|+++|..||+ .
T Consensus 697 fKldp~~l~~~p~P~P~~eif--V~-----s~~~eGvHLR~g~V---ARGGlRwSdR~eDfRtEvlgL~kaQ~vKNa--v 764 (1528)
T PF05088_consen 697 FKLDPSFLPDLPEPRPYFEIF--VY-----SPRFEGVHLRFGDV---ARGGLRWSDRPEDFRTEVLGLVKAQQVKNA--V 764 (1528)
T ss_pred EEEcHHHcCCCCCCCCcEEEE--EE-----CCceEEEEcccccc---ccCcccccCCHHHHHHHHHHHHHHHHhcCC--c
Confidence 357788877777655444432 11 23589988888775 9999999643 236899999999999999 7
Q ss_pred CCCCCcceEEeCCCCCC--CHHH----HHHHHHHHHHHHHhhcC---------CC---------C-CcCCCCCCCChhhH
Q 018214 96 IPYGGAKGGIGCNPREL--SMSE----LERLTRVFTQKIHDLIG---------IH---------R-DVPAPDMGTNSQTM 150 (359)
Q Consensus 96 lp~GGaKggI~~dP~~~--s~~e----~e~l~r~~~~~l~~~iG---------~~---------~-di~apDvgt~~~~m 150 (359)
||-||||||++++.... +..+ -..-++.|.+.|.++.. |. . -|.|.|-||- .+
T Consensus 765 Ivp~GsKGgfv~k~~~~~~~r~~~~~~~~~~y~~fi~~lLd~TDN~~~g~vv~p~~vv~~D~dDpYLVVAADKGTA--tf 842 (1528)
T PF05088_consen 765 IVPVGSKGGFVVKQLPDPADRDAWQAEGIACYKTFIRALLDLTDNLVDGKVVPPPDVVRYDGDDPYLVVAADKGTA--TF 842 (1528)
T ss_pred ccCCCCceeEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCCccCCCcceeecCCCCCceEeecCCCcc--hH
Confidence 89999999999874422 3332 22334555555544421 10 0 1567888883 34
Q ss_pred HHHHHHhhhhhCCCCccccCcccccCCCCCCC----chhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHH--HH
Q 018214 151 AWILDEYSKFHGHSPAVVTGKPIDLGGSLGRE----AATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAA--KF 224 (359)
Q Consensus 151 ~~i~d~~~~~~g~~~~~~tGkp~~~GG~~~r~----~aTg~Gv~~~~~~~~~~~g~~l~g~~v~VqG~G~VG~~~a--~~ 224 (359)
.-++.+.+.-+ |++.|+.+.+|||.|++ +.|++|.|.+++..++++|++++...+.|.|.|.+++-+. -+
T Consensus 843 SD~AN~ia~~~----gfWLgDAFASGGS~GYDHK~mGITArGAWesvkrHFrelg~D~q~~~fTvvGiGDMsGDVFGNGM 918 (1528)
T PF05088_consen 843 SDIANEIAAEY----GFWLGDAFASGGSAGYDHKKMGITARGAWESVKRHFRELGIDIQTDPFTVVGIGDMSGDVFGNGM 918 (1528)
T ss_pred HHHHHHHHHHc----CCCcchhhhcCCcCCCCchhhccchhhHHHHHHHHHHHhCCCcCCCceEEEEecCCCccccccch
Confidence 44444443333 57899999999999886 8999999999999999999999999999999999988886 56
Q ss_pred HHHCCCEEEeecCCC-----------------------------------------------------------------
Q 018214 225 FHEHGGKVVAVSDIT----------------------------------------------------------------- 239 (359)
Q Consensus 225 L~~~GakvvavsD~~----------------------------------------------------------------- 239 (359)
|.....|+||..|..
T Consensus 919 LlS~~irLvaAF~H~hIFiDP~PD~~~Sf~ER~RLF~lprSsW~DYd~~lIS~GGGVf~R~aKsI~lS~e~r~~lgi~~~ 998 (1528)
T PF05088_consen 919 LLSRHIRLVAAFNHRHIFIDPDPDPAASFAERKRLFELPRSSWADYDKSLISKGGGVFSRSAKSIPLSPEMRAALGIEKD 998 (1528)
T ss_pred hcccceeEEEecCcceeecCcCCChhhhHHHHHHHhcCCCCChhhcCHHHhCCCCceeecccCCCCCCHHHHHHhCCCCC
Confidence 788889999888655
Q ss_pred ---------------------C-----------------Cccc---ccccccccceEEEecCCCCCCHHHHHHHHhCCCe
Q 018214 240 ---------------------G-----------------GVLN---KENAADVKAKFIIEAANHPTDPEADEILSKKGVV 278 (359)
Q Consensus 240 ---------------------~-----------------~~I~---~~na~~i~akiVvegAN~p~t~ea~~~L~~rGI~ 278 (359)
| +--| .-|+.+++||+|+||+|..+|+.++-.+..+|..
T Consensus 999 ~~tp~eLi~aiL~apVDLlwnGGIGTYVKas~Es~~~vgDkaND~vRV~g~~lrakVvgEGgNLG~TQ~gRiE~a~~GGr 1078 (1528)
T PF05088_consen 999 SLTPDELIRAILKAPVDLLWNGGIGTYVKASTESHADVGDKANDAVRVNGSELRAKVVGEGGNLGLTQRGRIEYALNGGR 1078 (1528)
T ss_pred ccCHHHHHHHHhcCccceEecCCccceEecCCCcccccccccCcceeechHHceEEEEecccccccchHHHHHHHHcCCc
Confidence 1 1111 2367789999999999999999999999999999
Q ss_pred EeccccccccCcchhhHhh
Q 018214 279 ILPDIYANSGGVTVSYFEW 297 (359)
Q Consensus 279 viPD~laNaGGVi~s~~E~ 297 (359)
+..|++-||+||-||-.|.
T Consensus 1079 iNtDaiDNSaGVd~SDhEV 1097 (1528)
T PF05088_consen 1079 INTDAIDNSAGVDCSDHEV 1097 (1528)
T ss_pred cchhhhcccCCCcCccchh
Confidence 9999999999999999995
No 17
>COG2902 NAD-specific glutamate dehydrogenase [Amino acid transport and metabolism]
Probab=99.92 E-value=8.6e-24 Score=230.31 Aligned_cols=262 Identities=24% Similarity=0.230 Sum_probs=190.4
Q ss_pred cCCCHHHHHhccC--CCeEEEEEEEEEcCCCceeEEEeEEeeecCCCCCCCCCeeeecC--CCHHHHHHHHHHhHHHHhh
Q 018214 18 LGLDSKLERSLLI--PFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPE--VDPDEVNALAQLMTWKTAV 93 (359)
Q Consensus 18 ~~~~~~~~~~l~~--p~r~~~~~ip~~~d~g~~~~~~g~rv~h~~~~GPa~GGiR~~~~--~t~~ev~~LA~~Mt~K~Al 93 (359)
+.++|..++-|.+ |.++|.|.=| .|+|++..+..+ |+||+||+.. .-.+|++.|++.|..|||
T Consensus 759 FK~dps~i~~lp~P~Py~eIFVyg~---------~vEGvHLRFg~V---ARGGLRwsDR~~D~rtEvlgLvKAQqvKNa- 825 (1592)
T COG2902 759 FKFDPSLIDELPYPRPYREIFVYGP---------EVEGVHLRFGPV---ARGGLRWSDRNQDFRTEVLGLVKAQQVKNA- 825 (1592)
T ss_pred EEeChhhcCCCCCCCcceEEEEEcC---------cceEEEeecccc---ccccccccccchhHHHHHHHHHHHHHhcCC-
Confidence 3678888887775 5666666532 479977666554 9999999832 126799999999999999
Q ss_pred hcCCCCCcceEEeCCC--CCCCHHHHH----HHHHHHHHHHHhhc----CCCC---------------CcCCCCCCCChh
Q 018214 94 AAIPYGGAKGGIGCNP--RELSMSELE----RLTRVFTQKIHDLI----GIHR---------------DVPAPDMGTNSQ 148 (359)
Q Consensus 94 a~lp~GGaKggI~~dP--~~~s~~e~e----~l~r~~~~~l~~~i----G~~~---------------di~apDvgt~~~ 148 (359)
.||-+|||||+.+.+ ..-+.+|+. .-++.|.+.|.+++ .-.. -+.|+|-||-.
T Consensus 826 -vIvpvGAKGgf~~k~lp~g~~RD~i~~eg~~~Yk~Fi~~LlditDnii~~~vvpP~~vvr~d~dDpyLvVaaDKGTAt- 903 (1592)
T COG2902 826 -VIVPVGAKGGFLLKRLPTGGDRDAIFAEGIACYKAFISGLLDITDNIIDDQVVPPADVVRLDGDDPYLVVAADKGTAT- 903 (1592)
T ss_pred -cccccCCcceEecccCCCCCchHHHHHhhHHHHHHHHHHHHHHHHHhhcCCcCCChhhhhcCCCCCeEEEecCCCccc-
Confidence 788899999999874 344544432 22445565554322 1100 14678888731
Q ss_pred hHHHHHHHhhhhhCCCCccccCcccccCCCCCCC----chhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHH--
Q 018214 149 TMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGRE----AATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAA-- 222 (359)
Q Consensus 149 ~m~~i~d~~~~~~g~~~~~~tGkp~~~GG~~~r~----~aTg~Gv~~~~~~~~~~~g~~l~g~~v~VqG~G~VG~~~a-- 222 (359)
--+|.- ...+- .+++-|+.+.+|||.|.+ +.|++|++++++..++++|.+++...+.|.|.|.+.+-+.
T Consensus 904 FsD~AN-~vA~~----~~fwl~DAFaSGgS~GydHK~mGITarGaweaVkrhFrelg~d~Q~~~fTvvgiGdmsGDVfgN 978 (1592)
T COG2902 904 FSDIAN-SVARE----YGFWLGDAFASGGSAGYDHKKMGITARGAWEAVKRHFRELGLDTQTSPFTVVGIGDMSGDVFGN 978 (1592)
T ss_pred HHHHHH-HHHHH----hCCChhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHhcccCCCCceEEEeeCCCCcccccc
Confidence 112211 11111 257888999999998775 8999999999999999999999999999999766554443
Q ss_pred HHHHHCCCEEEeecCCC---------------------------------------------------------------
Q 018214 223 KFFHEHGGKVVAVSDIT--------------------------------------------------------------- 239 (359)
Q Consensus 223 ~~L~~~GakvvavsD~~--------------------------------------------------------------- 239 (359)
..|...--++||+.|..
T Consensus 979 gMLLS~~irLiAAfDhrhIFiDP~pd~a~S~~eR~RlF~lpRSsw~DYD~s~iS~gG~v~srs~K~I~Lspe~~~~lgi~ 1058 (1592)
T COG2902 979 GMLLSKHIRLIAAFDHRHIFIDPNPDLAVSFAERKRLFALPRSSWSDYDASKISKGGGVVSRSAKAITLSPEVIAALGID 1058 (1592)
T ss_pred ceeccccceeeEEecCCceeeCCCCCccccHHHHHHHhcCCcCchhhcchhhcCCCCeEEEeeccccCCCHHHHHHhCCC
Confidence 34555566677777655
Q ss_pred -----------------------------------CCcccc--------cccccccceEEEecCCCCCCHHHHHHHHhCC
Q 018214 240 -----------------------------------GGVLNK--------ENAADVKAKFIIEAANHPTDPEADEILSKKG 276 (359)
Q Consensus 240 -----------------------------------~~~I~~--------~na~~i~akiVvegAN~p~t~ea~~~L~~rG 276 (359)
.+.++- .|..+++||+|+||||..+|+.++-.|.++|
T Consensus 1059 ~~~~~P~elitAILKapvDLLw~GGIgTYVka~~etnA~vgDrANd~irv~g~e~raKvIgEGaNLgvTQ~gRief~~~G 1138 (1592)
T COG2902 1059 KTELAPNELITAILKAPVDLLWNGGIGTYVKASGETNADVGDRANDAIRVNGEEVRAKVIGEGANLGVTQRGRIEFALAG 1138 (1592)
T ss_pred ccccChHHHHHHHHcCchhhhccCCCceeEecCCCccchhhcccchhhccccceeceeEEeecccccccchhHHHHHHcC
Confidence 122222 3455689999999999999999999999999
Q ss_pred CeEeccccccccCcchhhHhhhh
Q 018214 277 VVILPDIYANSGGVTVSYFEWVQ 299 (359)
Q Consensus 277 I~viPD~laNaGGVi~s~~E~~~ 299 (359)
..+..|++.|+|||.||.+|..-
T Consensus 1139 gr~ntDaidNsaGVd~SD~EVni 1161 (1592)
T COG2902 1139 GRINTDAIDNSAGVDCSDHEVNI 1161 (1592)
T ss_pred CeecchhhcccCCCcccchhhhh
Confidence 99999999999999999999753
No 18
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.25 E-value=5.3e-06 Score=66.05 Aligned_cols=55 Identities=31% Similarity=0.380 Sum_probs=48.6
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCC
Q 018214 184 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI 238 (359)
Q Consensus 184 aTg~Gv~~~~~~~~~~~g~~l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~ 238 (359)
+||+|++..++...+..+.+++++++.|+|+|.+|..+++.|.+.|.+.+.++|.
T Consensus 1 ~t~~~~~~~l~~~~~~~~~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 1 ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred ChhHHHHHHHHHHHHHhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 4899999999999888888899999999999999999999999986555558777
No 19
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=97.67 E-value=0.00013 Score=65.49 Aligned_cols=96 Identities=23% Similarity=0.326 Sum_probs=54.8
Q ss_pred HHHHHHHHH-HHHHhCCCCCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC----------CCcccc-cccccccce
Q 018214 187 LGVFFATEA-LLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT----------GGVLNK-ENAADVKAK 254 (359)
Q Consensus 187 ~Gv~~~~~~-~~~~~g~~l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~----------~~~I~~-~na~~i~ak 254 (359)
||.-+++-. +++..+.-+.||+|.|.|||+||+.+|+.|...|++|+ |+|.| |..+.. +.+ --.+.
T Consensus 3 yG~g~S~~d~i~r~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~-V~e~DPi~alqA~~dGf~v~~~~~a-~~~ad 80 (162)
T PF00670_consen 3 YGTGQSLVDGIMRATNLMLAGKRVVVIGYGKVGKGIARALRGLGARVT-VTEIDPIRALQAAMDGFEVMTLEEA-LRDAD 80 (162)
T ss_dssp HHHHHHHHHHHHHHH-S--TTSEEEEE--SHHHHHHHHHHHHTT-EEE-EE-SSHHHHHHHHHTT-EEE-HHHH-TTT-S
T ss_pred cccchhHHHHHHhcCceeeCCCEEEEeCCCcccHHHHHHHhhCCCEEE-EEECChHHHHHhhhcCcEecCHHHH-HhhCC
Confidence 344444433 33455778999999999999999999999999999998 99998 333321 111 12566
Q ss_pred EEEecC-CCC-CCHHHHHHHHhCCCeEeccccccccCc
Q 018214 255 FIIEAA-NHP-TDPEADEILSKKGVVILPDIYANSGGV 290 (359)
Q Consensus 255 iVvegA-N~p-~t~ea~~~L~~rGI~viPD~laNaGGV 290 (359)
+|+-+. |.. ++.+.-+.|++ |. +++|+|..
T Consensus 81 i~vtaTG~~~vi~~e~~~~mkd-ga-----il~n~Gh~ 112 (162)
T PF00670_consen 81 IFVTATGNKDVITGEHFRQMKD-GA-----ILANAGHF 112 (162)
T ss_dssp EEEE-SSSSSSB-HHHHHHS-T-TE-----EEEESSSS
T ss_pred EEEECCCCccccCHHHHHHhcC-Ce-----EEeccCcC
Confidence 776543 333 47666555443 33 56888865
No 20
>PRK06392 homoserine dehydrogenase; Provisional
Probab=97.60 E-value=0.00021 Score=70.87 Aligned_cols=87 Identities=24% Similarity=0.391 Sum_probs=61.4
Q ss_pred EEEEEeccchHHHHHHHHHH--------CCCEEEeecCCCCCccccc------------------------ccc---ccc
Q 018214 208 KFAIQGFGNVGSWAAKFFHE--------HGGKVVAVSDITGGVLNKE------------------------NAA---DVK 252 (359)
Q Consensus 208 ~v~VqG~G~VG~~~a~~L~~--------~GakvvavsD~~~~~I~~~------------------------na~---~i~ 252 (359)
+|+|||||+||+.+++.|.+ .+.+||+|+|+++..+++. +.+ ...
T Consensus 2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~~ 81 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEIK 81 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcCC
Confidence 79999999999999999987 4789999999874333322 111 235
Q ss_pred ceEEEecCCCCCC--HHHH--HHHHhCCCeEeccccccccCcchhhHhh
Q 018214 253 AKFIIEAANHPTD--PEAD--EILSKKGVVILPDIYANSGGVTVSYFEW 297 (359)
Q Consensus 253 akiVvegAN~p~t--~ea~--~~L~~rGI~viPD~laNaGGVi~s~~E~ 297 (359)
+.+|+|.+...-+ |... ....++|+.|+ .+|.|.+...|-|.
T Consensus 82 ~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVV---TaNKgalA~~~~eL 127 (326)
T PRK06392 82 PDVIVDVTPASKDGIREKNLYINAFEHGIDVV---TANKSGLANHWHDI 127 (326)
T ss_pred CCEEEECCCCCCcCchHHHHHHHHHHCCCEEE---cCCHHHHHhhHHHH
Confidence 7899999964322 3443 45568999886 58888776555443
No 21
>PRK08374 homoserine dehydrogenase; Provisional
Probab=97.54 E-value=0.0002 Score=71.20 Aligned_cols=87 Identities=29% Similarity=0.443 Sum_probs=59.1
Q ss_pred CEEEEEeccchHHHHHHHHHH--------CC--CEEEeecCCCCCcccccc-----------------------------
Q 018214 207 MKFAIQGFGNVGSWAAKFFHE--------HG--GKVVAVSDITGGVLNKEN----------------------------- 247 (359)
Q Consensus 207 ~~v~VqG~G~VG~~~a~~L~~--------~G--akvvavsD~~~~~I~~~n----------------------------- 247 (359)
.+|+|||||+||+++++.|.+ .| .+|++|+|+++...+++.
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS 82 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence 589999999999999999877 57 799999997743322111
Q ss_pred ----cccccceEEEecCCCCCCHHHHHHHHhCCCeEeccccccccCcchhhHh
Q 018214 248 ----AADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFE 296 (359)
Q Consensus 248 ----a~~i~akiVvegAN~p~t~ea~~~L~~rGI~viPD~laNaGGVi~s~~E 296 (359)
.....+.+|+|..+.....+....+.++|+.++ .+|.|.+...|-|
T Consensus 83 ~~ell~~~~~DVvVd~t~~~~a~~~~~~al~~G~~VV---tanK~~la~~~~e 132 (336)
T PRK08374 83 PEEIVEEIDADIVVDVTNDKNAHEWHLEALKEGKSVV---TSNKPPIAFHYDE 132 (336)
T ss_pred HHHHHhcCCCCEEEECCCcHHHHHHHHHHHhhCCcEE---ECCHHHHHhCHHH
Confidence 112468899999875444444455667888775 3666555443333
No 22
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=97.03 E-value=0.017 Score=58.59 Aligned_cols=104 Identities=21% Similarity=0.221 Sum_probs=70.9
Q ss_pred chhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC-----------------------
Q 018214 183 AATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT----------------------- 239 (359)
Q Consensus 183 ~aTg~Gv~~~~~~~~~~~g~~l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~----------------------- 239 (359)
.+.+--++..+-...+..|.+++|+||.|.|+|++|+.+|+.|...|.+|++. |..
T Consensus 93 ~aVAE~~~~~lL~l~r~~g~~L~gktvGIIG~G~IG~~vA~~l~a~G~~V~~~-dp~~~~~~~~~~~~~L~ell~~sDiI 171 (378)
T PRK15438 93 IAVVEYVFSSLLMLAERDGFSLHDRTVGIVGVGNVGRRLQARLEALGIKTLLC-DPPRADRGDEGDFRSLDELVQEADIL 171 (378)
T ss_pred hHHHHHHHHHHHHHhccCCCCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEE-CCcccccccccccCCHHHHHhhCCEE
Confidence 34444445555555566788899999999999999999999999999999944 532
Q ss_pred --------------CCccccccccccc-ceEEEecCCCC-CCHHH-HHHHHhCCC-eEeccccccc
Q 018214 240 --------------GGVLNKENAADVK-AKFIIEAANHP-TDPEA-DEILSKKGV-VILPDIYANS 287 (359)
Q Consensus 240 --------------~~~I~~~na~~i~-akiVvegAN~p-~t~ea-~~~L~~rGI-~viPD~laNa 287 (359)
-+.|+++...+++ -.+++..+-++ +..+| .+.|+++-+ -.+=|+.-+=
T Consensus 172 ~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~~ga~LDV~e~E 237 (378)
T PRK15438 172 TFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGE 237 (378)
T ss_pred EEeCCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCCcEEEEecCCCC
Confidence 1223344444443 45888888888 45555 366766655 3556665544
No 23
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=97.01 E-value=0.0023 Score=62.45 Aligned_cols=103 Identities=19% Similarity=0.267 Sum_probs=70.1
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCCCC-----------ccccccccc
Q 018214 182 EAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGG-----------VLNKENAAD 250 (359)
Q Consensus 182 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~~~-----------~I~~~na~~ 250 (359)
+.+|+.| ++..+++..+.++.+++|.|.|+|.+|..+++.|...|++|+ ++|.+.. .+.-++..+
T Consensus 131 s~~~aeg---av~~a~~~~~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~-v~~r~~~~~~~~~~~G~~~~~~~~l~~ 206 (296)
T PRK08306 131 SIPTAEG---AIMMAIEHTPITIHGSNVLVLGFGRTGMTLARTLKALGANVT-VGARKSAHLARITEMGLSPFHLSELAE 206 (296)
T ss_pred cHhHHHH---HHHHHHHhCCCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEE-EEECCHHHHHHHHHcCCeeecHHHHHH
Confidence 4567777 444566667778899999999999999999999999999887 6676511 111111111
Q ss_pred -c-cceEEEecCCCC-CCHHHHHHHHhCCCeEeccccccccCc
Q 018214 251 -V-KAKFIIEAANHP-TDPEADEILSKKGVVILPDIYANSGGV 290 (359)
Q Consensus 251 -i-~akiVvegAN~p-~t~ea~~~L~~rGI~viPD~laNaGGV 290 (359)
+ ++.+|+.....+ ++.+.-+.+. +| .++=|+..+.||+
T Consensus 207 ~l~~aDiVI~t~p~~~i~~~~l~~~~-~g-~vIIDla~~pggt 247 (296)
T PRK08306 207 EVGKIDIIFNTIPALVLTKEVLSKMP-PE-ALIIDLASKPGGT 247 (296)
T ss_pred HhCCCCEEEECCChhhhhHHHHHcCC-CC-cEEEEEccCCCCc
Confidence 1 578888876444 3444333343 34 4677899999995
No 24
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=97.01 E-value=0.0039 Score=60.67 Aligned_cols=104 Identities=18% Similarity=0.299 Sum_probs=69.7
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCCCCc-----------cccccccc
Q 018214 182 EAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGGV-----------LNKENAAD 250 (359)
Q Consensus 182 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~~~~-----------I~~~na~~ 250 (359)
...|+.+.+. .+++..+.++.|++|.|.|+|.+|..+|+.|...|++|+ +.+.+... ++-++...
T Consensus 130 ~~~~Ae~ai~---~al~~~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~-v~~R~~~~~~~~~~~g~~~~~~~~l~~ 205 (287)
T TIGR02853 130 SIPTAEGAIM---MAIEHTDFTIHGSNVMVLGFGRTGMTIARTFSALGARVF-VGARSSADLARITEMGLIPFPLNKLEE 205 (287)
T ss_pred cHhHHHHHHH---HHHHhcCCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEE-EEeCCHHHHHHHHHCCCeeecHHHHHH
Confidence 4567777543 445556778999999999999999999999999999987 76765211 11111111
Q ss_pred -c-cceEEEecCCCC-CCHHHHHHHHhCCCeEeccccccccCcc
Q 018214 251 -V-KAKFIIEAANHP-TDPEADEILSKKGVVILPDIYANSGGVT 291 (359)
Q Consensus 251 -i-~akiVvegAN~p-~t~ea~~~L~~rGI~viPD~laNaGGVi 291 (359)
+ ++.+|+.....+ ++.+.-+.+ +++ .++=|...+.||+-
T Consensus 206 ~l~~aDiVint~P~~ii~~~~l~~~-k~~-aliIDlas~Pg~td 247 (287)
T TIGR02853 206 KVAEIDIVINTIPALVLTADVLSKL-PKH-AVIIDLASKPGGTD 247 (287)
T ss_pred HhccCCEEEECCChHHhCHHHHhcC-CCC-eEEEEeCcCCCCCC
Confidence 1 677888876444 343332333 334 57778889999983
No 25
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=96.87 E-value=0.0021 Score=65.75 Aligned_cols=89 Identities=18% Similarity=0.340 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC----------CC-cccccccccccc
Q 018214 185 TGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT----------GG-VLNKENAADVKA 253 (359)
Q Consensus 185 Tg~Gv~~~~~~~~~~~g~~l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~----------~~-~I~~~na~~i~a 253 (359)
||.+++ +.+++..+..+.|++|+|.|+|++|..+++.+...|++|+ |+|.+ |- .++.+.+- -.+
T Consensus 184 ~g~s~~---~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~Vi-V~d~d~~R~~~A~~~G~~~~~~~e~v-~~a 258 (413)
T cd00401 184 CRESLI---DGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVI-VTEVDPICALQAAMEGYEVMTMEEAV-KEG 258 (413)
T ss_pred hchhhH---HHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEECChhhHHHHHhcCCEEccHHHHH-cCC
Confidence 555543 4555566778899999999999999999999999999988 67776 21 11111110 157
Q ss_pred eEEEecCCCCC--CHHHHHHHHhCCCe
Q 018214 254 KFIIEAANHPT--DPEADEILSKKGVV 278 (359)
Q Consensus 254 kiVvegAN~p~--t~ea~~~L~~rGI~ 278 (359)
.+|++.+-++- +.+.-+.++..|++
T Consensus 259 DVVI~atG~~~~i~~~~l~~mk~Ggil 285 (413)
T cd00401 259 DIFVTTTGNKDIITGEHFEQMKDGAIV 285 (413)
T ss_pred CEEEECCCCHHHHHHHHHhcCCCCcEE
Confidence 78888764442 22223444554544
No 26
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=96.68 E-value=0.023 Score=48.91 Aligned_cols=48 Identities=27% Similarity=0.313 Sum_probs=38.5
Q ss_pred HHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHCC-CEEEeecCCC
Q 018214 191 FATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHG-GKVVAVSDIT 239 (359)
Q Consensus 191 ~~~~~~~~~~g~~l~g~~v~VqG~G~VG~~~a~~L~~~G-akvvavsD~~ 239 (359)
.++..++++.+.+++++++.|.|.|.+|..+++.|.+.| .+|+ +.|.+
T Consensus 4 ~g~~~a~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~-v~~r~ 52 (155)
T cd01065 4 LGFVRALEEAGIELKGKKVLILGAGGAARAVAYALAELGAAKIV-IVNRT 52 (155)
T ss_pred HHHHHHHHhhCCCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEE-EEcCC
Confidence 345556666677788999999999999999999999987 4555 77776
No 27
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.64 E-value=0.013 Score=52.81 Aligned_cols=78 Identities=22% Similarity=0.319 Sum_probs=55.0
Q ss_pred CCCchhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccch-HHHHHHHHHHCCCEEEeecCCCCCccccccccc-c-cceEE
Q 018214 180 GREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNV-GSWAAKFFHEHGGKVVAVSDITGGVLNKENAAD-V-KAKFI 256 (359)
Q Consensus 180 ~r~~aTg~Gv~~~~~~~~~~~g~~l~g~~v~VqG~G~V-G~~~a~~L~~~GakvvavsD~~~~~I~~~na~~-i-~akiV 256 (359)
...++|++.++.. ++....+++|++|.|.|.|.+ |..+|++|.++|++|+ +++.+. ++..+ + +|-+|
T Consensus 22 ~~~p~~~~a~v~l----~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~-v~~r~~-----~~l~~~l~~aDiV 91 (168)
T cd01080 22 GFIPCTPAGILEL----LKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVT-VCHSKT-----KNLKEHTKQADIV 91 (168)
T ss_pred CccCChHHHHHHH----HHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEE-EEECCc-----hhHHHHHhhCCEE
Confidence 3456777766554 444456799999999999985 8889999999999876 766642 22221 2 57778
Q ss_pred EecCCCC--CCHH
Q 018214 257 IEAANHP--TDPE 267 (359)
Q Consensus 257 vegAN~p--~t~e 267 (359)
+-+...| ++++
T Consensus 92 Isat~~~~ii~~~ 104 (168)
T cd01080 92 IVAVGKPGLVKGD 104 (168)
T ss_pred EEcCCCCceecHH
Confidence 7777766 4544
No 28
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=96.62 E-value=0.0061 Score=62.59 Aligned_cols=55 Identities=20% Similarity=0.364 Sum_probs=44.6
Q ss_pred CCchhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 181 REAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 181 r~~aTg~Gv~~~~~~~~~~~g~~l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
+...||.|++.+++.+. +..+.|++|.|.|+|++|..+|+.|...|++|+ |+|.+
T Consensus 190 n~~gt~~s~~~ai~rat---~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~Vi-V~d~d 244 (425)
T PRK05476 190 NRYGTGESLLDGIKRAT---NVLIAGKVVVVAGYGDVGKGCAQRLRGLGARVI-VTEVD 244 (425)
T ss_pred ccHHHHhhhHHHHHHhc---cCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEE-EEcCC
Confidence 34557777766655432 566899999999999999999999999999988 78776
No 29
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=96.53 E-value=0.0094 Score=53.61 Aligned_cols=38 Identities=24% Similarity=0.513 Sum_probs=32.1
Q ss_pred CCCCCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 201 GKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 201 g~~l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
+.++.|+||.|.|+|++|+.+|+.|...|++|++. |.+
T Consensus 31 ~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~-d~~ 68 (178)
T PF02826_consen 31 GRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGY-DRS 68 (178)
T ss_dssp BS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEE-ESS
T ss_pred ccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEe-ccc
Confidence 45699999999999999999999999999999954 444
No 30
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.43 E-value=0.012 Score=57.53 Aligned_cols=91 Identities=19% Similarity=0.326 Sum_probs=68.8
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccc-hHHHHHHHHHHCCCEEEeecCCCCCccccccccc--ccceEEEe
Q 018214 182 EAATGLGVFFATEALLAEHGKSISNMKFAIQGFGN-VGSWAAKFFHEHGGKVVAVSDITGGVLNKENAAD--VKAKFIIE 258 (359)
Q Consensus 182 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~v~VqG~G~-VG~~~a~~L~~~GakvvavsD~~~~~I~~~na~~--i~akiVve 258 (359)
.++|..|++.. +++.+.+++|++|+|.|.|+ ||..+|.+|.+.||+|+ ++++.. .|..+ -+|.+|+-
T Consensus 138 ~PcTp~ai~~l----l~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVt-v~~s~t-----~~l~~~~~~ADIVIs 207 (286)
T PRK14175 138 VPCTPLGIMEI----LKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVT-ILHSRS-----KDMASYLKDADVIVS 207 (286)
T ss_pred CCCcHHHHHHH----HHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEE-EEeCCc-----hhHHHHHhhCCEEEE
Confidence 57888887654 45678899999999999999 99999999999999998 777632 23332 27889999
Q ss_pred cCCCC--CCHHHHHHHHhCCCeEeccccccc
Q 018214 259 AANHP--TDPEADEILSKKGVVILPDIYANS 287 (359)
Q Consensus 259 gAN~p--~t~ea~~~L~~rGI~viPD~laNa 287 (359)
+..-| ++++ .+ +.| .++=|+-.|.
T Consensus 208 Avg~p~~i~~~---~v-k~g-avVIDvGi~~ 233 (286)
T PRK14175 208 AVGKPGLVTKD---VV-KEG-AVIIDVGNTP 233 (286)
T ss_pred CCCCCcccCHH---Hc-CCC-cEEEEcCCCc
Confidence 99888 5664 23 445 4566666664
No 31
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.40 E-value=0.015 Score=56.78 Aligned_cols=91 Identities=23% Similarity=0.320 Sum_probs=66.1
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccc-hHHHHHHHHHHCCCEEEeecCCCCCccccccccc--ccceEEEe
Q 018214 182 EAATGLGVFFATEALLAEHGKSISNMKFAIQGFGN-VGSWAAKFFHEHGGKVVAVSDITGGVLNKENAAD--VKAKFIIE 258 (359)
Q Consensus 182 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~v~VqG~G~-VG~~~a~~L~~~GakvvavsD~~~~~I~~~na~~--i~akiVve 258 (359)
.++|..|+... +++++.+++|++|+|.|-++ ||.-+|.+|.+.||.|. ++++.- .|... -+|.||+-
T Consensus 144 ~PcTp~av~~l----l~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt-v~hs~T-----~~l~~~~~~ADIvv~ 213 (287)
T PRK14176 144 VPCTPHGVIRA----LEEYGVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVS-VCHVFT-----DDLKKYTLDADILVV 213 (287)
T ss_pred CCCcHHHHHHH----HHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEE-EEeccC-----CCHHHHHhhCCEEEE
Confidence 57888887654 45678999999999999988 99999999999999987 877632 23333 37889988
Q ss_pred cCCCC--CCHHHHHHHHhCCCeEeccccccc
Q 018214 259 AANHP--TDPEADEILSKKGVVILPDIYANS 287 (359)
Q Consensus 259 gAN~p--~t~ea~~~L~~rGI~viPD~laNa 287 (359)
++.-| ++++ .-+.|. ++=|+-.|.
T Consensus 214 AvG~p~~i~~~----~vk~ga-vVIDvGin~ 239 (287)
T PRK14176 214 ATGVKHLIKAD----MVKEGA-VIFDVGITK 239 (287)
T ss_pred ccCCccccCHH----HcCCCc-EEEEecccc
Confidence 77777 5554 334453 344555553
No 32
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=96.32 E-value=0.0075 Score=61.60 Aligned_cols=52 Identities=21% Similarity=0.383 Sum_probs=40.4
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 184 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 184 aTg~Gv~~~~~~~~~~~g~~l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
.||.+++ +.+++..+..+.|++|+|.|+|++|..+|+.|...|++|+ |.|.+
T Consensus 176 g~g~s~~---~~i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~Vi-V~d~d 227 (406)
T TIGR00936 176 GTGQSTI---DGILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGARVI-VTEVD 227 (406)
T ss_pred ccchhHH---HHHHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcCEEE-EEeCC
Confidence 3554443 3344445667899999999999999999999999999988 66654
No 33
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.31 E-value=0.016 Score=56.54 Aligned_cols=90 Identities=27% Similarity=0.310 Sum_probs=65.5
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCEEEEEecc-chHHHHHHHHHHCCCEEEeecCCCCCccccccccc--ccceEEEe
Q 018214 182 EAATGLGVFFATEALLAEHGKSISNMKFAIQGFG-NVGSWAAKFFHEHGGKVVAVSDITGGVLNKENAAD--VKAKFIIE 258 (359)
Q Consensus 182 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~v~VqG~G-~VG~~~a~~L~~~GakvvavsD~~~~~I~~~na~~--i~akiVve 258 (359)
.++|..|+.. ++++.+.+++|++|+|.|-| .||.-+|.+|.++||.|. ++++. | .|... -+|.||+-
T Consensus 137 ~PcTp~avi~----lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVt-v~hs~----t-~~l~~~~~~ADIvV~ 206 (285)
T PRK14191 137 VPATPMGVMR----LLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVS-VCHIL----T-KDLSFYTQNADIVCV 206 (285)
T ss_pred CCCcHHHHHH----HHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEE-EEeCC----c-HHHHHHHHhCCEEEE
Confidence 5788888765 45567899999999999988 899999999999999987 77663 2 23322 27899999
Q ss_pred cCCCC--CCHHHHHHHHhCCCeEecccccc
Q 018214 259 AANHP--TDPEADEILSKKGVVILPDIYAN 286 (359)
Q Consensus 259 gAN~p--~t~ea~~~L~~rGI~viPD~laN 286 (359)
+.+.| ++++- + +.|- ++=|+-.|
T Consensus 207 AvG~p~~i~~~~---v-k~Ga-vVIDvGi~ 231 (285)
T PRK14191 207 GVGKPDLIKASM---V-KKGA-VVVDIGIN 231 (285)
T ss_pred ecCCCCcCCHHH---c-CCCc-EEEEeecc
Confidence 99988 45442 2 5553 33344443
No 34
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=96.31 E-value=0.009 Score=62.04 Aligned_cols=53 Identities=23% Similarity=0.419 Sum_probs=41.8
Q ss_pred HHHHHHHH-HHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 186 GLGVFFAT-EALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 186 g~Gv~~~~-~~~~~~~g~~l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
.+|...++ ...++..+..+.|++|.|.|+|++|+.+|+.|...|++|+ ++|.+
T Consensus 233 ~~G~~~s~~d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~Vi-V~e~d 286 (476)
T PTZ00075 233 IYGCRHSLIDGIFRATDVMIAGKTVVVCGYGDVGKGCAQALRGFGARVV-VTEID 286 (476)
T ss_pred HHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeCC
Confidence 44444433 4445556778999999999999999999999999999988 66554
No 35
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.29 E-value=0.014 Score=56.82 Aligned_cols=91 Identities=16% Similarity=0.225 Sum_probs=63.2
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccc-hHHHHHHHHHHCCCEEEeecCCCCCcccccccc-c-ccceEEEe
Q 018214 182 EAATGLGVFFATEALLAEHGKSISNMKFAIQGFGN-VGSWAAKFFHEHGGKVVAVSDITGGVLNKENAA-D-VKAKFIIE 258 (359)
Q Consensus 182 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~v~VqG~G~-VG~~~a~~L~~~GakvvavsD~~~~~I~~~na~-~-i~akiVve 258 (359)
.+.|-.|+...++ +.+.+++|++|+|.|.|. ||..++..|.+.|+.|. ++++.. .+.. . -+|.+|+-
T Consensus 139 ~p~T~~gii~~L~----~~~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVt-v~~~~t-----~~L~~~~~~aDIvI~ 208 (283)
T PRK14192 139 GSATPAGIMRLLK----AYNIELAGKHAVVVGRSAILGKPMAMMLLNANATVT-ICHSRT-----QNLPELVKQADIIVG 208 (283)
T ss_pred cCCcHHHHHHHHH----HcCCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEE-EEeCCc-----hhHHHHhccCCEEEE
Confidence 4677777766554 568899999999999998 99999999999999765 887731 2221 1 26888888
Q ss_pred cCCCC--CCHHHHHHHHhCCCeEeccccccc
Q 018214 259 AANHP--TDPEADEILSKKGVVILPDIYANS 287 (359)
Q Consensus 259 gAN~p--~t~ea~~~L~~rGI~viPD~laNa 287 (359)
+...| ++++ .| +.| .++=|+..|.
T Consensus 209 AtG~~~~v~~~---~l-k~g-avViDvg~n~ 234 (283)
T PRK14192 209 AVGKPELIKKD---WI-KQG-AVVVDAGFHP 234 (283)
T ss_pred ccCCCCcCCHH---Hc-CCC-CEEEEEEEee
Confidence 88655 4443 23 444 3444555554
No 36
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=96.24 E-value=0.072 Score=51.74 Aligned_cols=81 Identities=26% Similarity=0.449 Sum_probs=55.9
Q ss_pred EEEEEeccchHHHHHHHHHHCCCEEEeecCCC----------CCc--------cc-------------c-----cccccc
Q 018214 208 KFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT----------GGV--------LN-------------K-----ENAADV 251 (359)
Q Consensus 208 ~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~----------~~~--------I~-------------~-----~na~~i 251 (359)
+|.|.|+|++|...|+.|.+.|.+|+ +.|.+ +-. .. . +..+.+
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~-v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~~~l 80 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGHEVV-GYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATIDEL 80 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCCeEE-EEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHHHHH
Confidence 68999999999999999999999987 67766 000 00 0 000111
Q ss_pred -----cceEEEecCCCC--CCHHHHHHHHhCCCeEeccccccccCcc
Q 018214 252 -----KAKFIIEAANHP--TDPEADEILSKKGVVILPDIYANSGGVT 291 (359)
Q Consensus 252 -----~akiVvegAN~p--~t~ea~~~L~~rGI~viPD~laNaGGVi 291 (359)
.-++|+...+.. .+.+..+.++++|+.|+ | ...+||+.
T Consensus 81 ~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~-d-apvsG~~~ 125 (301)
T PRK09599 81 APLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFV-D-VGTSGGVW 125 (301)
T ss_pred HhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEE-e-CCCCcCHH
Confidence 124677776654 45667788999999998 7 66777754
No 37
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=96.23 E-value=0.026 Score=49.44 Aligned_cols=91 Identities=18% Similarity=0.261 Sum_probs=61.8
Q ss_pred chhHHHHHHHHHHHHHHhCCCCCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeecCCCCCccccccccc--ccceEEEec
Q 018214 183 AATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDITGGVLNKENAAD--VKAKFIIEA 259 (359)
Q Consensus 183 ~aTg~Gv~~~~~~~~~~~g~~l~g~~v~VqG-~G~VG~~~a~~L~~~GakvvavsD~~~~~I~~~na~~--i~akiVveg 259 (359)
+.|..|+ .+++++.|.+++|++|.|.| ...+|.-++.+|.+.|+.|. +++++.. |.+. =+|.||+-+
T Consensus 9 p~t~~a~----~~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~-~~~~~t~-----~l~~~v~~ADIVvsA 78 (140)
T cd05212 9 SPVAKAV----KELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVY-SCDWKTI-----QLQSKVHDADVVVVG 78 (140)
T ss_pred ccHHHHH----HHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEE-EeCCCCc-----CHHHHHhhCCEEEEe
Confidence 4565554 45556679999999999999 57889999999999999998 6676321 2222 267888877
Q ss_pred CCCCCCHHHHHHHHhCCCeEecccccc
Q 018214 260 ANHPTDPEADEILSKKGVVILPDIYAN 286 (359)
Q Consensus 260 AN~p~t~ea~~~L~~rGI~viPD~laN 286 (359)
...+ +--+...-+.|.+++ |+=.|
T Consensus 79 tg~~--~~i~~~~ikpGa~Vi-dvg~~ 102 (140)
T cd05212 79 SPKP--EKVPTEWIKPGATVI-NCSPT 102 (140)
T ss_pred cCCC--CccCHHHcCCCCEEE-EcCCC
Confidence 7766 222223345666655 44433
No 38
>PRK08223 hypothetical protein; Validated
Probab=96.22 E-value=0.0079 Score=58.73 Aligned_cols=79 Identities=19% Similarity=0.248 Sum_probs=61.7
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC------------------------------------------CC
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT------------------------------------------GG 241 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~------------------------------------------~~ 241 (359)
|+.++|.|.|+|-+|+.++++|...|..=+.+.|.| ..
T Consensus 25 L~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~ 104 (287)
T PRK08223 25 LRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPE 104 (287)
T ss_pred HhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEec
Confidence 688999999999999999999999998666688888 34
Q ss_pred cccccccccc--cceEEEecCCCCC--C-HHHHHHHHhCCCeEecc
Q 018214 242 VLNKENAADV--KAKFIIEAANHPT--D-PEADEILSKKGVVILPD 282 (359)
Q Consensus 242 ~I~~~na~~i--~akiVvegAN~p~--t-~ea~~~L~~rGI~viPD 282 (359)
-|+++|+..+ ++.+|+++..++. + -...+.-.+.||.++=-
T Consensus 105 ~l~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~ 150 (287)
T PRK08223 105 GIGKENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTA 150 (287)
T ss_pred ccCccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEE
Confidence 5777887765 6889999988762 2 23345567888866543
No 39
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.17 E-value=0.016 Score=53.77 Aligned_cols=77 Identities=17% Similarity=0.213 Sum_probs=55.2
Q ss_pred CCCCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC-C---------Ccccc---c-ccc-cccceEEEecCCCC-CC
Q 018214 202 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT-G---------GVLNK---E-NAA-DVKAKFIIEAANHP-TD 265 (359)
Q Consensus 202 ~~l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~-~---------~~I~~---~-na~-~i~akiVvegAN~p-~t 265 (359)
++++|++|.|.|.|+||..-++.|.+.|++|+ |.+.+ . +-|.- + ... --.+.+|+=+-|.+ +.
T Consensus 5 l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~Vt-Vvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d~~ln 83 (205)
T TIGR01470 5 ANLEGRAVLVVGGGDVALRKARLLLKAGAQLR-VIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDDEELN 83 (205)
T ss_pred EEcCCCeEEEECcCHHHHHHHHHHHHCCCEEE-EEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCCHHHH
Confidence 35889999999999999999999999999998 44443 1 11110 0 000 12577888888877 66
Q ss_pred HHHHHHHHhCCCeE
Q 018214 266 PEADEILSKKGVVI 279 (359)
Q Consensus 266 ~ea~~~L~~rGI~v 279 (359)
....+..+++||+|
T Consensus 84 ~~i~~~a~~~~ilv 97 (205)
T TIGR01470 84 RRVAHAARARGVPV 97 (205)
T ss_pred HHHHHHHHHcCCEE
Confidence 67777778899876
No 40
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=96.13 E-value=0.017 Score=57.28 Aligned_cols=77 Identities=29% Similarity=0.421 Sum_probs=55.8
Q ss_pred CCCCCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC-------------------------------------CCcc
Q 018214 201 GKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT-------------------------------------GGVL 243 (359)
Q Consensus 201 g~~l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~-------------------------------------~~~I 243 (359)
|.+|.|+||-|.|+|++|+.+|+.|...|.+|++. |.. .+.|
T Consensus 137 g~el~gkTvGIiG~G~IG~~va~~l~afgm~v~~~-d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i 215 (324)
T COG0111 137 GTELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGY-DPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLI 215 (324)
T ss_pred cccccCCEEEEECCCHHHHHHHHHHHhCCCeEEEE-CCCCchhhhccccceecccHHHHHhhCCEEEEcCCCCcchhccc
Confidence 34688999999999999999999999999999944 553 4556
Q ss_pred ccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCCe
Q 018214 244 NKENAADVK-AKFIIEAANHPT-DPEA-DEILSKKGVV 278 (359)
Q Consensus 244 ~~~na~~i~-akiVvegAN~p~-t~ea-~~~L~~rGI~ 278 (359)
|++...+.| --+++-.|-+++ ..+| .+.|++.-|.
T Consensus 216 ~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~ 253 (324)
T COG0111 216 NAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIA 253 (324)
T ss_pred CHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcc
Confidence 666666664 228888888884 4444 3455554443
No 41
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.12 E-value=0.02 Score=56.30 Aligned_cols=90 Identities=20% Similarity=0.269 Sum_probs=63.5
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCEEEEEecc-chHHHHHHHHHHCCCEEEeecCCCCCcccccccccc--cceEEEe
Q 018214 182 EAATGLGVFFATEALLAEHGKSISNMKFAIQGFG-NVGSWAAKFFHEHGGKVVAVSDITGGVLNKENAADV--KAKFIIE 258 (359)
Q Consensus 182 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~v~VqG~G-~VG~~~a~~L~~~GakvvavsD~~~~~I~~~na~~i--~akiVve 258 (359)
.+.|..|+... +++.+.+++||+|+|.|-| .||..+|..|.+.|+.|+ ++++... |...+ +|.+|+-
T Consensus 139 ~PcTp~aii~l----L~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVt-v~~~~t~-----~l~e~~~~ADIVIs 208 (301)
T PRK14194 139 TPCTPSGCLRL----LEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVT-VVHSRST-----DAKALCRQADIVVA 208 (301)
T ss_pred CCCcHHHHHHH----HHHhCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEE-EECCCCC-----CHHHHHhcCCEEEE
Confidence 46888877654 5566899999999999996 999999999999999998 7766422 33322 6778887
Q ss_pred cCCCC--CCHHHHHHHHhCCCeEecccccc
Q 018214 259 AANHP--TDPEADEILSKKGVVILPDIYAN 286 (359)
Q Consensus 259 gAN~p--~t~ea~~~L~~rGI~viPD~laN 286 (359)
+...| ++++ +.+.|. ++=|+-.|
T Consensus 209 avg~~~~v~~~----~ik~Ga-iVIDvgin 233 (301)
T PRK14194 209 AVGRPRLIDAD----WLKPGA-VVIDVGIN 233 (301)
T ss_pred ecCChhcccHh----hccCCc-EEEEeccc
Confidence 77666 3433 244553 34455544
No 42
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=96.08 E-value=0.12 Score=53.01 Aligned_cols=161 Identities=17% Similarity=0.252 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC------------CCccccccccc--ccce
Q 018214 189 VFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT------------GGVLNKENAAD--VKAK 254 (359)
Q Consensus 189 v~~~~~~~~~~~g~~l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~------------~~~I~~~na~~--i~ak 254 (359)
+..+.-..+++.-.+|++++|.|.|+|.+|.-+|++|.++|.+-|.|+..+ +..++-++... -.|.
T Consensus 161 i~saAv~lA~~~~~~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~D 240 (414)
T COG0373 161 ISSAAVELAKRIFGSLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEAD 240 (414)
T ss_pred hHHHHHHHHHHHhcccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCC
Confidence 334444444443345899999999999999999999999998777788776 23333222222 2577
Q ss_pred EEEecCCCC---CCHHH-HHHHHhCCCeEe------ccccccccC---cc---hhhHhhh--hcccccccCHHHHHHHHH
Q 018214 255 FIIEAANHP---TDPEA-DEILSKKGVVIL------PDIYANSGG---VT---VSYFEWV--QNIQGFMWEEEKVNHELK 316 (359)
Q Consensus 255 iVvegAN~p---~t~ea-~~~L~~rGI~vi------PD~laNaGG---Vi---~s~~E~~--~n~~~~~w~~e~v~~~l~ 316 (359)
+|+-+...| ++.+. ...+..|-=+++ +|+--+.|. |- +..++-+ .|+. ..++...+.+
T Consensus 241 vVissTsa~~~ii~~~~ve~a~~~r~~~livDiavPRdie~~v~~l~~v~l~~iDDL~~iv~~n~~----~R~~~~~~ae 316 (414)
T COG0373 241 VVISSTSAPHPIITREMVERALKIRKRLLIVDIAVPRDVEPEVGELPNVFLYTIDDLEEIVEENLE----ARKEEAAKAE 316 (414)
T ss_pred EEEEecCCCccccCHHHHHHHHhcccCeEEEEecCCCCCCccccCcCCeEEEehhhHHHHHHHhHH----HHHHHHHHHH
Confidence 777775555 46544 344444311333 333333332 21 1111111 1111 1233445567
Q ss_pred HHHHHHHHHHHHHHHHcCCC-----HHHHHHHHHHHHHHHHH
Q 018214 317 RYMMSAFKDIKTMCQTHNCN-----LRMGAFTLGVNRVAQAT 353 (359)
Q Consensus 317 ~~m~~~~~~v~~~a~~~~~~-----~r~aA~~~A~~Rv~~a~ 353 (359)
.+|.+-+.+.++.-+...+. +|.-|..+..+-+.++.
T Consensus 317 ~iIeee~~~~~~~l~~~~~~~~i~~lr~~a~~v~~~ele~a~ 358 (414)
T COG0373 317 AIIEEELAEFMEWLKKLEVVPTIRALREQAEDVREEELEKAL 358 (414)
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777664 44444444444444444
No 43
>PLN02494 adenosylhomocysteinase
Probab=96.05 E-value=0.011 Score=61.52 Aligned_cols=51 Identities=24% Similarity=0.412 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 185 TGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 185 Tg~Gv~~~~~~~~~~~g~~l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
||.++ ++.+++..+..+.|++|.|.|+|.+|+.+|+.+...|++|+ |.|.+
T Consensus 236 tgqS~---~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VI-V~e~d 286 (477)
T PLN02494 236 CRHSL---PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGARVI-VTEID 286 (477)
T ss_pred ccccH---HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeCC
Confidence 44554 44455555777899999999999999999999999999988 66655
No 44
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=96.04 E-value=0.027 Score=50.49 Aligned_cols=73 Identities=21% Similarity=0.278 Sum_probs=49.4
Q ss_pred CCchhHHHHHHHHHHHHHHhCCCCCCCEEEEEecc-chHHHHHHHHHHCCCEEEeecCCCCCccccccccc--ccceEEE
Q 018214 181 REAATGLGVFFATEALLAEHGKSISNMKFAIQGFG-NVGSWAAKFFHEHGGKVVAVSDITGGVLNKENAAD--VKAKFII 257 (359)
Q Consensus 181 r~~aTg~Gv~~~~~~~~~~~g~~l~g~~v~VqG~G-~VG~~~a~~L~~~GakvvavsD~~~~~I~~~na~~--i~akiVv 257 (359)
.-+.|..|+... +++.+.+++||+|+|.|-+ .||.-++.+|.++||.|. +++++- .|..+ -+|.||+
T Consensus 15 ~~PcTp~aii~l----L~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt-~~h~~T-----~~l~~~~~~ADIVV 84 (160)
T PF02882_consen 15 FVPCTPLAIIEL----LEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVT-ICHSKT-----KNLQEITRRADIVV 84 (160)
T ss_dssp S--HHHHHHHHH----HHHTT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEE-EE-TTS-----SSHHHHHTTSSEEE
T ss_pred CcCCCHHHHHHH----HHhcCCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEE-eccCCC-----CcccceeeeccEEe
Confidence 356788877654 4557889999999999976 599999999999999998 787742 22222 2678888
Q ss_pred ecCCCC
Q 018214 258 EAANHP 263 (359)
Q Consensus 258 egAN~p 263 (359)
-++--|
T Consensus 85 sa~G~~ 90 (160)
T PF02882_consen 85 SAVGKP 90 (160)
T ss_dssp E-SSST
T ss_pred eeeccc
Confidence 877666
No 45
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=96.01 E-value=0.072 Score=52.39 Aligned_cols=83 Identities=20% Similarity=0.322 Sum_probs=59.4
Q ss_pred CCCCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC---------------------------------CCccccccc
Q 018214 202 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT---------------------------------GGVLNKENA 248 (359)
Q Consensus 202 ~~l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~---------------------------------~~~I~~~na 248 (359)
.+|.|+||.|.|+|++|+.+|+.|...|.+|++. |.. .+.|+++..
T Consensus 141 ~~L~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~-d~~~~~~~~~~~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~ 219 (311)
T PRK08410 141 GEIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVYY-STSGKNKNEEYERVSLEELLKTSDIISIHAPLNEKTKNLIAYKEL 219 (311)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhhcCCEEEEE-CCCccccccCceeecHHHHhhcCCEEEEeCCCCchhhcccCHHHH
Confidence 3589999999999999999999999999999965 322 344555555
Q ss_pred cccc-ceEEEecCCCC-CCHHH-HHHHHhCCCeEeccccc
Q 018214 249 ADVK-AKFIIEAANHP-TDPEA-DEILSKKGVVILPDIYA 285 (359)
Q Consensus 249 ~~i~-akiVvegAN~p-~t~ea-~~~L~~rGI~viPD~la 285 (359)
.++| -.+++--|-++ +..+| .+.|++.-|...=|+..
T Consensus 220 ~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~AaLDV~~ 259 (311)
T PRK08410 220 KLLKDGAILINVGRGGIVNEKDLAKALDEKDIYAGLDVLE 259 (311)
T ss_pred HhCCCCeEEEECCCccccCHHHHHHHHHcCCeEEEEecCC
Confidence 5554 45788888888 45444 46777666654455543
No 46
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=96.00 E-value=0.016 Score=58.77 Aligned_cols=100 Identities=21% Similarity=0.300 Sum_probs=65.5
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC------------------------
Q 018214 184 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT------------------------ 239 (359)
Q Consensus 184 aTg~Gv~~~~~~~~~~~g~~l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~------------------------ 239 (359)
+.+-=++..+..+.+..|..++|+||.|.|+|++|+.+|+.|...|.+|+ +.|..
T Consensus 94 aVAE~v~~~lL~l~r~~g~~l~gktvGIIG~G~IG~~va~~l~a~G~~V~-~~Dp~~~~~~~~~~~~~l~ell~~aDiV~ 172 (381)
T PRK00257 94 GVVDYVLGSLLTLAEREGVDLAERTYGVVGAGHVGGRLVRVLRGLGWKVL-VCDPPRQEAEGDGDFVSLERILEECDVIS 172 (381)
T ss_pred HHHHHHHHHHHHHhcccCCCcCcCEEEEECCCHHHHHHHHHHHHCCCEEE-EECCcccccccCccccCHHHHHhhCCEEE
Confidence 33433444445555566788999999999999999999999999999998 44542
Q ss_pred -------------CCccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCCe-Eecccc
Q 018214 240 -------------GGVLNKENAADVK-AKFIIEAANHPT-DPEA-DEILSKKGVV-ILPDIY 284 (359)
Q Consensus 240 -------------~~~I~~~na~~i~-akiVvegAN~p~-t~ea-~~~L~~rGI~-viPD~l 284 (359)
.+.|+++....++ -.+++..+-+++ ..+| .+.|+++-+. .+=|+.
T Consensus 173 lh~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~ 234 (381)
T PRK00257 173 LHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVW 234 (381)
T ss_pred EeCcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCC
Confidence 1334444444443 357778888874 4444 3556555442 444544
No 47
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.91 E-value=0.011 Score=48.63 Aligned_cols=78 Identities=19% Similarity=0.376 Sum_probs=51.7
Q ss_pred CCCCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC---CCccc--cccc-ccc-cceEEEecCCCC-CCHHHHHHHH
Q 018214 202 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT---GGVLN--KENA-ADV-KAKFIIEAANHP-TDPEADEILS 273 (359)
Q Consensus 202 ~~l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~---~~~I~--~~na-~~i-~akiVvegAN~p-~t~ea~~~L~ 273 (359)
++++|++|.|.|.|++|..-++.|.+.||+|+=+|... .+.++ +... ..+ ++.+|+-+.|.+ +..+..+..+
T Consensus 3 l~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~~~i~~~~~~~~~~l~~~~lV~~at~d~~~n~~i~~~a~ 82 (103)
T PF13241_consen 3 LDLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSEGLIQLIRREFEEDLDGADLVFAATDDPELNEAIYADAR 82 (103)
T ss_dssp E--TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHHTSCEEEESS-GGGCTTESEEEE-SS-HHHHHHHHHHHH
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhhhHHHHHhhhHHHHHhhheEEEecCCCHHHHHHHHHHHh
Confidence 35899999999999999999999999999998566551 11111 0111 112 567888888777 5666667778
Q ss_pred hCCCeE
Q 018214 274 KKGVVI 279 (359)
Q Consensus 274 ~rGI~v 279 (359)
++||++
T Consensus 83 ~~~i~v 88 (103)
T PF13241_consen 83 ARGILV 88 (103)
T ss_dssp HTTSEE
T ss_pred hCCEEE
Confidence 899875
No 48
>PRK13243 glyoxylate reductase; Reviewed
Probab=95.87 E-value=0.086 Score=52.34 Aligned_cols=37 Identities=22% Similarity=0.367 Sum_probs=32.7
Q ss_pred CCCCCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCC
Q 018214 201 GKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI 238 (359)
Q Consensus 201 g~~l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~ 238 (359)
|.+|.|+||.|.|+|++|+.+|+.|...|.+|++. |.
T Consensus 145 g~~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~-d~ 181 (333)
T PRK13243 145 GYDVYGKTIGIIGFGRIGQAVARRAKGFGMRILYY-SR 181 (333)
T ss_pred ccCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEE-CC
Confidence 34689999999999999999999999999999844 54
No 49
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.85 E-value=0.032 Score=54.49 Aligned_cols=75 Identities=20% Similarity=0.213 Sum_probs=58.8
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccc-hHHHHHHHHHHCCCEEEeecCCCCCccccccccc--ccceEEEe
Q 018214 182 EAATGLGVFFATEALLAEHGKSISNMKFAIQGFGN-VGSWAAKFFHEHGGKVVAVSDITGGVLNKENAAD--VKAKFIIE 258 (359)
Q Consensus 182 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~v~VqG~G~-VG~~~a~~L~~~GakvvavsD~~~~~I~~~na~~--i~akiVve 258 (359)
.++|..|++.. +++.+.+++|++|+|.|-++ ||.-+|.+|.+.||.|+ ++++. | .|... -+|.+|+-
T Consensus 139 ~PcTp~av~~l----l~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVt-v~hs~----T-~~l~~~~~~ADIvi~ 208 (285)
T PRK10792 139 RPCTPRGIMTL----LERYGIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVT-VCHRF----T-KNLRHHVRNADLLVV 208 (285)
T ss_pred CCCCHHHHHHH----HHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEE-EEECC----C-CCHHHHHhhCCEEEE
Confidence 57888887654 55668999999999999998 99999999999999987 87763 2 23332 26889998
Q ss_pred cCCCC--CCH
Q 018214 259 AANHP--TDP 266 (359)
Q Consensus 259 gAN~p--~t~ 266 (359)
+..-| +++
T Consensus 209 avG~p~~v~~ 218 (285)
T PRK10792 209 AVGKPGFIPG 218 (285)
T ss_pred cCCCcccccH
Confidence 88776 455
No 50
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=95.85 E-value=0.015 Score=54.36 Aligned_cols=78 Identities=19% Similarity=0.313 Sum_probs=55.4
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC------------------------------------------CC
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT------------------------------------------GG 241 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~------------------------------------------~~ 241 (359)
|+.++|.|.|+|.+|+++|+.|...|..-+.+.|.+ ..
T Consensus 19 L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~ 98 (228)
T cd00757 19 LKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNE 98 (228)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecc
Confidence 678999999999999999999999998666688887 11
Q ss_pred cccccccccc--cceEEEecCCCCCC-HHHHHHHHhCCCeEec
Q 018214 242 VLNKENAADV--KAKFIIEAANHPTD-PEADEILSKKGVVILP 281 (359)
Q Consensus 242 ~I~~~na~~i--~akiVvegAN~p~t-~ea~~~L~~rGI~viP 281 (359)
.++.+|...+ ++.+|+.+.-++.+ ....+...+.+|.++=
T Consensus 99 ~i~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~ip~i~ 141 (228)
T cd00757 99 RLDAENAEELIAGYDLVLDCTDNFATRYLINDACVKLGKPLVS 141 (228)
T ss_pred eeCHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEE
Confidence 2333343332 47788887766533 2334556788876654
No 51
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=95.85 E-value=0.015 Score=55.24 Aligned_cols=78 Identities=13% Similarity=0.279 Sum_probs=58.3
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC------------------------------------------CC
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT------------------------------------------GG 241 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~------------------------------------------~~ 241 (359)
|+.++|.|.|.|-+|+.+|+.|...|..=+.+.|.| ..
T Consensus 22 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~~ 101 (240)
T TIGR02355 22 LKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPINA 101 (240)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEec
Confidence 678999999999999999999999998666688877 22
Q ss_pred cccccccccc--cceEEEecCCCCCC-HHHHHHHHhCCCeEec
Q 018214 242 VLNKENAADV--KAKFIIEAANHPTD-PEADEILSKKGVVILP 281 (359)
Q Consensus 242 ~I~~~na~~i--~akiVvegAN~p~t-~ea~~~L~~rGI~viP 281 (359)
.++++|...+ ++.+|+.+.-++-+ ..-.+...+.+|.++=
T Consensus 102 ~i~~~~~~~~~~~~DlVvd~~D~~~~r~~ln~~~~~~~ip~v~ 144 (240)
T TIGR02355 102 KLDDAELAALIAEHDIVVDCTDNVEVRNQLNRQCFAAKVPLVS 144 (240)
T ss_pred cCCHHHHHHHhhcCCEEEEcCCCHHHHHHHHHHHHHcCCCEEE
Confidence 3445555543 57788888776643 2345667888887663
No 52
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=95.84 E-value=0.016 Score=57.68 Aligned_cols=36 Identities=22% Similarity=0.285 Sum_probs=32.4
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
|+.++|.|.|.|.+|+++|+.|...|..-+.+.|.|
T Consensus 22 L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D 57 (338)
T PRK12475 22 IREKHVLIVGAGALGAANAEALVRAGIGKLTIADRD 57 (338)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 788999999999999999999999998555588877
No 53
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=95.78 E-value=0.036 Score=50.17 Aligned_cols=53 Identities=28% Similarity=0.342 Sum_probs=46.3
Q ss_pred chhHHHHHHHHHHHHHHhCCCCCCCEEEEEec-cchHHHHHHHHHHCCCEEEee
Q 018214 183 AATGLGVFFATEALLAEHGKSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAV 235 (359)
Q Consensus 183 ~aTg~Gv~~~~~~~~~~~g~~l~g~~v~VqG~-G~VG~~~a~~L~~~Gakvvav 235 (359)
.-|++-.+..++..++++|.+++++++.|.|. |.+|+.+++.|.+.|++|+.+
T Consensus 5 ~~ta~aav~~~~~~l~~~~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~ 58 (194)
T cd01078 5 NTTAAAAVAAAGKALELMGKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLV 58 (194)
T ss_pred HHHHHHHHHHHHHHHHHhCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEE
Confidence 35777778888888888899999999999996 999999999999999998844
No 54
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=95.77 E-value=0.02 Score=54.42 Aligned_cols=78 Identities=10% Similarity=0.290 Sum_probs=56.9
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC------------------------------------------CC
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT------------------------------------------GG 241 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~------------------------------------------~~ 241 (359)
|+.++|.|.|.|.+|+.+++.|...|..=+.+.|.| ..
T Consensus 30 L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~~ 109 (245)
T PRK05690 30 LKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETINA 109 (245)
T ss_pred hcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEec
Confidence 688999999999999999999999998555588877 22
Q ss_pred cccccccccc--cceEEEecCCCCCCHH-HHHHHHhCCCeEec
Q 018214 242 VLNKENAADV--KAKFIIEAANHPTDPE-ADEILSKKGVVILP 281 (359)
Q Consensus 242 ~I~~~na~~i--~akiVvegAN~p~t~e-a~~~L~~rGI~viP 281 (359)
.|+++|++.+ ++.+|+.+.-++.+.. ..+...+.+|.++=
T Consensus 110 ~i~~~~~~~~~~~~DiVi~~~D~~~~r~~ln~~~~~~~ip~v~ 152 (245)
T PRK05690 110 RLDDDELAALIAGHDLVLDCTDNVATRNQLNRACFAAKKPLVS 152 (245)
T ss_pred cCCHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHHHhCCEEEE
Confidence 3444454432 5778888887664432 34566788887653
No 55
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.75 E-value=0.05 Score=53.09 Aligned_cols=91 Identities=22% Similarity=0.311 Sum_probs=65.2
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeecCCCCCccccccccc--ccceEEEe
Q 018214 182 EAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDITGGVLNKENAAD--VKAKFIIE 258 (359)
Q Consensus 182 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~v~VqG-~G~VG~~~a~~L~~~GakvvavsD~~~~~I~~~na~~--i~akiVve 258 (359)
.++|..|+.. ++++.+.+++||+|+|.| ..-||.-++.+|.+.||.|. +|++. | .|... -+|.||+-
T Consensus 139 ~PcTp~avi~----ll~~y~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt-~chs~----T-~~l~~~~~~ADIvIs 208 (284)
T PRK14177 139 LPCTPYGMVL----LLKEYGIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVT-LCHSK----T-QNLPSIVRQADIIVG 208 (284)
T ss_pred CCCCHHHHHH----HHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCCC----C-CCHHHHHhhCCEEEE
Confidence 5789888776 455678999999999999 67789999999999999998 88874 2 22322 26889988
Q ss_pred cCCCC--CCHHHHHHHHhCCCeEeccccccc
Q 018214 259 AANHP--TDPEADEILSKKGVVILPDIYANS 287 (359)
Q Consensus 259 gAN~p--~t~ea~~~L~~rGI~viPD~laNa 287 (359)
++.-| ++++- + +.|. ++=|+=.|-
T Consensus 209 AvGk~~~i~~~~---i-k~ga-vVIDvGin~ 234 (284)
T PRK14177 209 AVGKPEFIKADW---I-SEGA-VLLDAGYNP 234 (284)
T ss_pred eCCCcCccCHHH---c-CCCC-EEEEecCcc
Confidence 88877 56442 2 3443 344554443
No 56
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.74 E-value=0.042 Score=53.62 Aligned_cols=90 Identities=20% Similarity=0.261 Sum_probs=65.1
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCEEEEEec-cchHHHHHHHHHHCCCEEEeecCCCCCccccccccc--ccceEEEe
Q 018214 182 EAATGLGVFFATEALLAEHGKSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDITGGVLNKENAAD--VKAKFIIE 258 (359)
Q Consensus 182 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~v~VqG~-G~VG~~~a~~L~~~GakvvavsD~~~~~I~~~na~~--i~akiVve 258 (359)
.++|..|+... +++.+.+++|++|+|.|- |.||.-+|.+|.+.|+.|+ ++.+.. .|... -+|.+|+-
T Consensus 138 ~PcTp~avi~l----L~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVt-v~~s~t-----~~l~~~~~~ADIVI~ 207 (284)
T PRK14179 138 IPCTPAGIMEM----FREYNVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVT-LTHSRT-----RNLAEVARKADILVV 207 (284)
T ss_pred cCCCHHHHHHH----HHHhCCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEE-EECCCC-----CCHHHHHhhCCEEEE
Confidence 57898887544 556789999999999998 9999999999999999998 765421 23332 26888888
Q ss_pred cCCCC--CCHHHHHHHHhCCCeEecccccc
Q 018214 259 AANHP--TDPEADEILSKKGVVILPDIYAN 286 (359)
Q Consensus 259 gAN~p--~t~ea~~~L~~rGI~viPD~laN 286 (359)
+...| ++++ +-+.|. ++=|+-.|
T Consensus 208 avg~~~~v~~~----~ik~Ga-vVIDvgin 232 (284)
T PRK14179 208 AIGRGHFVTKE----FVKEGA-VVIDVGMN 232 (284)
T ss_pred ecCccccCCHH----HccCCc-EEEEecce
Confidence 88777 4443 345563 34455555
No 57
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=95.72 E-value=0.0087 Score=51.17 Aligned_cols=34 Identities=32% Similarity=0.347 Sum_probs=29.6
Q ss_pred CCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 206 NMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 206 g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
.+||+|.|.|.+|+.+|+.|...|..=+.+.|.+
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 5799999999999999999999999655588886
No 58
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.71 E-value=0.044 Score=53.53 Aligned_cols=75 Identities=19% Similarity=0.292 Sum_probs=57.3
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccch-HHHHHHHHHHCCCEEEeecCCCCCccccccccc--ccceEEEe
Q 018214 182 EAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNV-GSWAAKFFHEHGGKVVAVSDITGGVLNKENAAD--VKAKFIIE 258 (359)
Q Consensus 182 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~v~VqG~G~V-G~~~a~~L~~~GakvvavsD~~~~~I~~~na~~--i~akiVve 258 (359)
.++|..|+.. ++++.+.+++|++|+|.|.+++ |.-++.+|.+.|+.|+ ++++. | .|.+. -+|.||+-
T Consensus 138 ~PcTp~aii~----lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt-~~hs~----t-~~l~~~~~~ADIVV~ 207 (285)
T PRK14189 138 RPCTPYGVMK----MLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVT-ICHSK----T-RDLAAHTRQADIVVA 207 (285)
T ss_pred cCCCHHHHHH----HHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEE-EecCC----C-CCHHHHhhhCCEEEE
Confidence 5788877664 4566789999999999998887 9999999999999998 66653 2 23322 26888888
Q ss_pred cCCCC--CCH
Q 018214 259 AANHP--TDP 266 (359)
Q Consensus 259 gAN~p--~t~ 266 (359)
++.-| +++
T Consensus 208 avG~~~~i~~ 217 (285)
T PRK14189 208 AVGKRNVLTA 217 (285)
T ss_pred cCCCcCccCH
Confidence 88776 454
No 59
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=95.69 E-value=0.016 Score=51.19 Aligned_cols=77 Identities=35% Similarity=0.409 Sum_probs=52.0
Q ss_pred CEEEEEeccchHHHHHHHHHHCCCEEEeecCCC--------------------------------------CCcccccc-
Q 018214 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT--------------------------------------GGVLNKEN- 247 (359)
Q Consensus 207 ~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~--------------------------------------~~~I~~~n- 247 (359)
++|.+.|+|++|+.+|+.|.+.|..|. +.|.+ ..++..++
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~-~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i 80 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVT-VYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENI 80 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEE-EEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEE-eeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHH
Confidence 479999999999999999999999998 77877 11111111
Q ss_pred cccc-cceEEEecCCCC--CCHHHHHHHHhCCCeEecccc
Q 018214 248 AADV-KAKFIIEAANHP--TDPEADEILSKKGVVILPDIY 284 (359)
Q Consensus 248 a~~i-~akiVvegAN~p--~t~ea~~~L~~rGI~viPD~l 284 (359)
...+ +-++|++-.+.. .+.+..+.+.++|+.|+=--+
T Consensus 81 ~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV 120 (163)
T PF03446_consen 81 LAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPV 120 (163)
T ss_dssp GGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEE
T ss_pred hhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeee
Confidence 1222 467888887765 456778889999988875544
No 60
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=95.68 E-value=0.023 Score=52.39 Aligned_cols=36 Identities=28% Similarity=0.348 Sum_probs=31.6
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
|+.++|.|.|.|.+|+.+|+.|...|..=+.+.|.+
T Consensus 19 l~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 19 LLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 788999999999999999999999998444488876
No 61
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=95.62 E-value=0.02 Score=53.23 Aligned_cols=78 Identities=18% Similarity=0.313 Sum_probs=55.0
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC-----------------------------------------CCc
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT-----------------------------------------GGV 242 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~-----------------------------------------~~~ 242 (359)
|+.++|.|.|+|.+|+.+|+.|...|..=+.+.|.+ ...
T Consensus 26 L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~~ 105 (212)
T PRK08644 26 LKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHNEK 105 (212)
T ss_pred HhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEeee
Confidence 788999999999999999999999998644488877 112
Q ss_pred ccccccccc--cceEEEecCCCCCC-HHHHHHHHhC-CCeEec
Q 018214 243 LNKENAADV--KAKFIIEAANHPTD-PEADEILSKK-GVVILP 281 (359)
Q Consensus 243 I~~~na~~i--~akiVvegAN~p~t-~ea~~~L~~r-GI~viP 281 (359)
++++|...+ ++.+|+++..++.+ ..-.+.+.+. ++.++=
T Consensus 106 i~~~~~~~~~~~~DvVI~a~D~~~~r~~l~~~~~~~~~~p~I~ 148 (212)
T PRK08644 106 IDEDNIEELFKDCDIVVEAFDNAETKAMLVETVLEHPGKKLVA 148 (212)
T ss_pred cCHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhCCCCEEE
Confidence 333444332 57899998776643 3334556666 776653
No 62
>PRK06153 hypothetical protein; Provisional
Probab=95.62 E-value=0.012 Score=59.71 Aligned_cols=77 Identities=14% Similarity=0.298 Sum_probs=55.7
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC-------------------------------------------C
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT-------------------------------------------G 240 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~-------------------------------------------~ 240 (359)
|++++|+|.|+|-+|++++..|++.|.+=+.+.|.| .
T Consensus 174 L~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~~I~~~~ 253 (393)
T PRK06153 174 LEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRRGIVPHP 253 (393)
T ss_pred HhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCCeEEEEe
Confidence 578999999999999999999999998544488877 1
Q ss_pred Ccccccccccc-cceEEEecCCCCCCH-HHHHHHHhCCCeEe
Q 018214 241 GVLNKENAADV-KAKFIIEAANHPTDP-EADEILSKKGVVIL 280 (359)
Q Consensus 241 ~~I~~~na~~i-~akiVvegAN~p~t~-ea~~~L~~rGI~vi 280 (359)
.-|+++|++.+ +|.+|+++.-+.-+. ...+.+.+.||.+|
T Consensus 254 ~~I~~~n~~~L~~~DiV~dcvDn~~aR~~ln~~a~~~gIP~I 295 (393)
T PRK06153 254 EYIDEDNVDELDGFTFVFVCVDKGSSRKLIVDYLEALGIPFI 295 (393)
T ss_pred ecCCHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEE
Confidence 22455555544 477888877765433 33466778887644
No 63
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.55 E-value=0.038 Score=51.07 Aligned_cols=76 Identities=24% Similarity=0.247 Sum_probs=49.2
Q ss_pred CCCCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC----------CCcccc--c---ccccccceEEEecCCCCCCH
Q 018214 202 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT----------GGVLNK--E---NAADVKAKFIIEAANHPTDP 266 (359)
Q Consensus 202 ~~l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~----------~~~I~~--~---na~~i~akiVvegAN~p~t~ 266 (359)
++++|++|.|.|.|.||...++.|.+.|++|+-|+ .+ .+.|+- . ..+--.+.+|+-+.|.+-.-
T Consensus 6 l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs-~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~elN 84 (202)
T PRK06718 6 IDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVIS-PELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPRVN 84 (202)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEc-CCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHHHH
Confidence 46899999999999999999999999999987444 33 111111 0 11112577888888877433
Q ss_pred HHHHHHHhCCCe
Q 018214 267 EADEILSKKGVV 278 (359)
Q Consensus 267 ea~~~L~~rGI~ 278 (359)
+.-....+++++
T Consensus 85 ~~i~~~a~~~~l 96 (202)
T PRK06718 85 EQVKEDLPENAL 96 (202)
T ss_pred HHHHHHHHhCCc
Confidence 332333345554
No 64
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=95.50 E-value=0.026 Score=54.60 Aligned_cols=36 Identities=28% Similarity=0.605 Sum_probs=31.1
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
|+.++|+|.|.|-||+++|+.|.+.|..=+.+.|.+
T Consensus 28 L~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 28 FADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred hcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 688999999999999999999999995434477876
No 65
>PRK07877 hypothetical protein; Provisional
Probab=95.47 E-value=0.023 Score=62.04 Aligned_cols=84 Identities=14% Similarity=0.260 Sum_probs=65.3
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCC--EEEeecCCC-----------------------------------------C
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGG--KVVAVSDIT-----------------------------------------G 240 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~Ga--kvvavsD~~-----------------------------------------~ 240 (359)
|+.++|.|.|+| +|+++|.+|...|. +++ +.|-| .
T Consensus 105 L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~-lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~ 182 (722)
T PRK07877 105 LGRLRIGVVGLS-VGHAIAHTLAAEGLCGELR-LADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFT 182 (722)
T ss_pred HhcCCEEEEEec-HHHHHHHHHHHccCCCeEE-EEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEe
Confidence 789999999999 99999999999994 666 88877 3
Q ss_pred Ccccccccccc--cceEEEecCCCCCCH-HHHHHHHhCCCeEeccccccccCcc
Q 018214 241 GVLNKENAADV--KAKFIIEAANHPTDP-EADEILSKKGVVILPDIYANSGGVT 291 (359)
Q Consensus 241 ~~I~~~na~~i--~akiVvegAN~p~t~-ea~~~L~~rGI~viPD~laNaGGVi 291 (359)
.-|+++|++.+ ++.+|+++..+.-+. ...+.-.++||.+|=. +.++|.+
T Consensus 183 ~~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~iP~i~~--~~~~g~~ 234 (722)
T PRK07877 183 DGLTEDNVDAFLDGLDVVVEECDSLDVKVLLREAARARRIPVLMA--TSDRGLL 234 (722)
T ss_pred ccCCHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEE--cCCCCCc
Confidence 44778888885 789999999986432 3345567889988844 3455665
No 66
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=95.46 E-value=0.14 Score=49.03 Aligned_cols=134 Identities=21% Similarity=0.331 Sum_probs=89.5
Q ss_pred EEEEEeccchHHHHHHHHHHCCCEEEeecCCC------------------------------------CCcccccccccc
Q 018214 208 KFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT------------------------------------GGVLNKENAADV 251 (359)
Q Consensus 208 ~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~------------------------------------~~~I~~~na~~i 251 (359)
++-+.|+|.+|.++++.|.+.|..|| +-|.+ -+.|+...++.+
T Consensus 2 ~iGmiGLGrMG~n~v~rl~~~ghdvV-~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~~l 80 (300)
T COG1023 2 QIGMIGLGRMGANLVRRLLDGGHDVV-GYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVIDDL 80 (300)
T ss_pred cceeeccchhhHHHHHHHHhCCCeEE-EEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHHHHH
Confidence 34578999999999999999999999 66777 333665555554
Q ss_pred c-----ceEEEecCCCCC--CHHHHHHHHhCCCeEeccccccccCcchhhH----------hhhhccc-----------c
Q 018214 252 K-----AKFIIEAANHPT--DPEADEILSKKGVVILPDIYANSGGVTVSYF----------EWVQNIQ-----------G 303 (359)
Q Consensus 252 ~-----akiVvegAN~p~--t~ea~~~L~~rGI~viPD~laNaGGVi~s~~----------E~~~n~~-----------~ 303 (359)
. -.+|++|.|.-. |.+-.+.|.++||.++- .--|||+--.-. |-++.+. +
T Consensus 81 a~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD--~GTSGG~~G~~~G~~lMiGG~~~a~~~~~pif~~lA~ge~G 158 (300)
T COG1023 81 APLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLD--VGTSGGVWGAERGYCLMIGGDEEAVERLEPIFKALAPGEDG 158 (300)
T ss_pred HhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEe--ccCCCCchhhhcCceEEecCcHHHHHHHHHHHHhhCcCcCc
Confidence 2 368999999884 55666789999998884 467888732110 1111100 0
Q ss_pred ccc--------CHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCHHHHHHHH
Q 018214 304 FMW--------EEEKVNHELKRYMMSAFKDIKTMCQT--HNCNLRMGAFTL 344 (359)
Q Consensus 304 ~~w--------~~e~v~~~l~~~m~~~~~~v~~~a~~--~~~~~r~aA~~~ 344 (359)
+-. =-+-|+..+|.-|-+++.+=++.-++ ++.++.+.|-+.
T Consensus 159 yl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D~~~VA~vW 209 (300)
T COG1023 159 YLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYDLEAVAEVW 209 (300)
T ss_pred cccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 000 01135566777788888888877765 567787777543
No 67
>PRK06932 glycerate dehydrogenase; Provisional
Probab=95.44 E-value=0.17 Score=49.82 Aligned_cols=82 Identities=21% Similarity=0.327 Sum_probs=56.0
Q ss_pred CCCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC-------------------------------CCcccccccccc
Q 018214 203 SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT-------------------------------GGVLNKENAADV 251 (359)
Q Consensus 203 ~l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~-------------------------------~~~I~~~na~~i 251 (359)
++.|+||.|.|+|++|+.+|+.|...|.+|++.+-.. .+.||++...++
T Consensus 144 ~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~~~~~~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~m 223 (314)
T PRK06932 144 DVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASVCREGYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALM 223 (314)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCcccccccccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhC
Confidence 5899999999999999999999999999999764211 233444444444
Q ss_pred c-ceEEEecCCCC-CCHHH-HHHHHhCCCe-Eecccc
Q 018214 252 K-AKFIIEAANHP-TDPEA-DEILSKKGVV-ILPDIY 284 (359)
Q Consensus 252 ~-akiVvegAN~p-~t~ea-~~~L~~rGI~-viPD~l 284 (359)
| --+++--|-++ +..+| .+.|++.-|. ..=|+.
T Consensus 224 k~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~ 260 (314)
T PRK06932 224 KPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVL 260 (314)
T ss_pred CCCeEEEECCCccccCHHHHHHHHHcCCccEEEEecC
Confidence 3 34777777777 44444 3566666554 344444
No 68
>PRK07574 formate dehydrogenase; Provisional
Probab=95.41 E-value=0.13 Score=52.35 Aligned_cols=35 Identities=20% Similarity=0.258 Sum_probs=31.7
Q ss_pred CCCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCC
Q 018214 203 SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI 238 (359)
Q Consensus 203 ~l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~ 238 (359)
+|.|++|.|.|+|++|+.+|+.|...|.+|++. |.
T Consensus 189 ~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~-dr 223 (385)
T PRK07574 189 DLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYT-DR 223 (385)
T ss_pred ecCCCEEEEECCCHHHHHHHHHHHhCCCEEEEE-CC
Confidence 489999999999999999999999999999854 44
No 69
>PRK14851 hypothetical protein; Provisional
Probab=95.35 E-value=0.036 Score=60.18 Aligned_cols=79 Identities=16% Similarity=0.256 Sum_probs=61.0
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC------------------------------------------CC
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT------------------------------------------GG 241 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~------------------------------------------~~ 241 (359)
|++++|.|.|+|-||+++++.|...|..=+.+.|.| ..
T Consensus 41 L~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~~~ 120 (679)
T PRK14851 41 LAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPFPA 120 (679)
T ss_pred HhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEEec
Confidence 678999999999999999999999998555588877 34
Q ss_pred cccccccccc--cceEEEecCCCCCCH---HHHHHHHhCCCeEecc
Q 018214 242 VLNKENAADV--KAKFIIEAANHPTDP---EADEILSKKGVVILPD 282 (359)
Q Consensus 242 ~I~~~na~~i--~akiVvegAN~p~t~---ea~~~L~~rGI~viPD 282 (359)
-|+++|++.+ ++.+|+++..++... ...+...+++|.++=-
T Consensus 121 ~i~~~n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~ 166 (679)
T PRK14851 121 GINADNMDAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITA 166 (679)
T ss_pred CCChHHHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEe
Confidence 4777787765 789999999886422 2234456788877643
No 70
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.34 E-value=0.063 Score=52.26 Aligned_cols=76 Identities=21% Similarity=0.271 Sum_probs=59.5
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeecCCCCCccccccccc--ccceEEEe
Q 018214 182 EAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDITGGVLNKENAAD--VKAKFIIE 258 (359)
Q Consensus 182 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~v~VqG-~G~VG~~~a~~L~~~GakvvavsD~~~~~I~~~na~~--i~akiVve 258 (359)
.+.|..|++. ++++.+.+++||+|+|.| ...||.-++.+|.+.||.|. +|++. | .|... -+|.||+-
T Consensus 138 ~PcTp~av~~----lL~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt-~chs~----T-~~l~~~~~~ADIvIs 207 (278)
T PRK14172 138 LPCTPNSVIT----LIKSLNIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVT-ICHSK----T-KNLKEVCKKADILVV 207 (278)
T ss_pred cCCCHHHHHH----HHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE-EeCCC----C-CCHHHHHhhCCEEEE
Confidence 5778888765 455678999999999999 67789999999999999987 88773 2 23333 26889999
Q ss_pred cCCCC--CCHH
Q 018214 259 AANHP--TDPE 267 (359)
Q Consensus 259 gAN~p--~t~e 267 (359)
++.-| ++++
T Consensus 208 AvGkp~~i~~~ 218 (278)
T PRK14172 208 AIGRPKFIDEE 218 (278)
T ss_pred cCCCcCccCHH
Confidence 88888 5655
No 71
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=95.32 E-value=0.029 Score=53.09 Aligned_cols=36 Identities=33% Similarity=0.613 Sum_probs=31.4
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
|+.++|.|.|.|.||+++++.|.+.|..=+.+.|.+
T Consensus 9 L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D 44 (231)
T cd00755 9 LRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFD 44 (231)
T ss_pred HhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 578899999999999999999999998444488876
No 72
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=95.32 E-value=0.52 Score=48.24 Aligned_cols=152 Identities=17% Similarity=0.239 Sum_probs=79.4
Q ss_pred CCCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC-----------C-Cccccccccc-c-cceEEEecCCCC---CC
Q 018214 203 SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT-----------G-GVLNKENAAD-V-KAKFIIEAANHP---TD 265 (359)
Q Consensus 203 ~l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~-----------~-~~I~~~na~~-i-~akiVvegAN~p---~t 265 (359)
++.+++|.|.|.|.+|..+++.|...|++-|.+++.+ + ..++.++... + ++.+|+.+...| ++
T Consensus 179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~~~~i~ 258 (423)
T PRK00045 179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAPHPIIG 258 (423)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCCCcEEc
Confidence 5789999999999999999999999998433377776 2 1222222211 1 577888887655 34
Q ss_pred HHHH-HHHHhC--CCeEeccccc---------cccCcchhhHhhhhcccccc-cCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018214 266 PEAD-EILSKK--GVVILPDIYA---------NSGGVTVSYFEWVQNIQGFM-WEEEKVNHELKRYMMSAFKDIKTMCQT 332 (359)
Q Consensus 266 ~ea~-~~L~~r--GI~viPD~la---------NaGGVi~s~~E~~~n~~~~~-w~~e~v~~~l~~~m~~~~~~v~~~a~~ 332 (359)
++.- ..+..| +-.++=|... +--||..-..+-++...... -..++-..+.+.++.+.+++..+.-+.
T Consensus 259 ~~~l~~~~~~~~~~~~vviDla~Prdid~~v~~l~~v~l~~vDdl~~~~~~n~~~r~~~~~~a~~ii~~~~~~f~~~~~~ 338 (423)
T PRK00045 259 KGMVERALKARRHRPLLLVDLAVPRDIEPEVGELPGVYLYDVDDLQEIVEENLAQRQEAAEKAEAIVEEEVAEFMEWLRS 338 (423)
T ss_pred HHHHHHHHhhccCCCeEEEEeCCCCCCcccccccCCeEEEEHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4432 333333 2233323311 11233211112111110000 001122334566666677766666666
Q ss_pred cCC-----CHHHHHHHHHHHHHHHHHH
Q 018214 333 HNC-----NLRMGAFTLGVNRVAQATL 354 (359)
Q Consensus 333 ~~~-----~~r~aA~~~A~~Rv~~a~~ 354 (359)
..+ .+|.-+..+..+.+.++++
T Consensus 339 ~~~~p~I~~lr~~~~~i~~~el~~~~~ 365 (423)
T PRK00045 339 LEVVPTIRALREQAEEIREEELERALK 365 (423)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665 4455555555555555543
No 73
>PRK06270 homoserine dehydrogenase; Provisional
Probab=95.30 E-value=0.057 Score=53.77 Aligned_cols=39 Identities=41% Similarity=0.666 Sum_probs=32.8
Q ss_pred CEEEEEeccchHHHHHHHHHHC----------CCEEEeecCCCCCcccc
Q 018214 207 MKFAIQGFGNVGSWAAKFFHEH----------GGKVVAVSDITGGVLNK 245 (359)
Q Consensus 207 ~~v~VqG~G~VG~~~a~~L~~~----------GakvvavsD~~~~~I~~ 245 (359)
.+|+|.|+|+||+.+++.|.+. +.+|++|+|+++..+++
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~ 51 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDP 51 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCc
Confidence 4799999999999999998765 68999999987666554
No 74
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.29 E-value=0.065 Score=52.24 Aligned_cols=77 Identities=22% Similarity=0.283 Sum_probs=59.8
Q ss_pred CCchhHHHHHHHHHHHHHHhCCCCCCCEEEEEecc-chHHHHHHHHHHCCCEEEeecCCCCCccccccccc--ccceEEE
Q 018214 181 REAATGLGVFFATEALLAEHGKSISNMKFAIQGFG-NVGSWAAKFFHEHGGKVVAVSDITGGVLNKENAAD--VKAKFII 257 (359)
Q Consensus 181 r~~aTg~Gv~~~~~~~~~~~g~~l~g~~v~VqG~G-~VG~~~a~~L~~~GakvvavsD~~~~~I~~~na~~--i~akiVv 257 (359)
-.++|..|+. +++++.+.+++|++|+|.|-+ -||.-+|.+|.++||.|. +|++. | .|... -+|.||+
T Consensus 136 ~~PcTp~avi----~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVt-i~hs~----T-~~l~~~~~~ADIvV 205 (281)
T PRK14183 136 FVPCTPLGVM----ELLEEYEIDVKGKDVCVVGASNIVGKPMAALLLNANATVD-ICHIF----T-KDLKAHTKKADIVI 205 (281)
T ss_pred CCCCcHHHHH----HHHHHcCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCCC----C-cCHHHHHhhCCEEE
Confidence 3578888775 455667899999999999976 899999999999999987 87763 2 23333 2788999
Q ss_pred ecCCCC--CCHH
Q 018214 258 EAANHP--TDPE 267 (359)
Q Consensus 258 egAN~p--~t~e 267 (359)
-+..-| ++++
T Consensus 206 ~AvGkp~~i~~~ 217 (281)
T PRK14183 206 VGVGKPNLITED 217 (281)
T ss_pred EecCcccccCHH
Confidence 999888 4544
No 75
>PRK14852 hypothetical protein; Provisional
Probab=95.25 E-value=0.038 Score=61.85 Aligned_cols=81 Identities=12% Similarity=0.134 Sum_probs=63.4
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC------------------------------------------CC
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT------------------------------------------GG 241 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~------------------------------------------~~ 241 (359)
|+.++|.|.|+|-||+.+++.|...|..=+.+.|-| ..
T Consensus 330 L~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~~~ 409 (989)
T PRK14852 330 LLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSFPE 409 (989)
T ss_pred HhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEEec
Confidence 889999999999999999999999998666688887 33
Q ss_pred cccccccccc--cceEEEecCCCCCCHHH---HHHHHhCCCeEecccc
Q 018214 242 VLNKENAADV--KAKFIIEAANHPTDPEA---DEILSKKGVVILPDIY 284 (359)
Q Consensus 242 ~I~~~na~~i--~akiVvegAN~p~t~ea---~~~L~~rGI~viPD~l 284 (359)
-|+++|++.+ ++.+|+++..++.+... .....++||.++=.-.
T Consensus 410 ~I~~en~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~ 457 (989)
T PRK14852 410 GVAAETIDAFLKDVDLLVDGIDFFALDIRRRLFNRALELGIPVITAGP 457 (989)
T ss_pred CCCHHHHHHHhhCCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeec
Confidence 4677888875 78999999998755332 2334788987764333
No 76
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=95.24 E-value=0.041 Score=50.78 Aligned_cols=36 Identities=25% Similarity=0.323 Sum_probs=31.8
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
|+.++|.|.|.|-+|+.+|+.|...|..=+.+.|.+
T Consensus 19 L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 19 LEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 788999999999999999999999998533388877
No 77
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=95.23 E-value=0.018 Score=47.92 Aligned_cols=75 Identities=27% Similarity=0.407 Sum_probs=47.6
Q ss_pred eccchHHHHHHHHHHC----CCEEEeecCCCCCccccc------------cc----ccccceEEEecCCCCCCHHHHHHH
Q 018214 213 GFGNVGSWAAKFFHEH----GGKVVAVSDITGGVLNKE------------NA----ADVKAKFIIEAANHPTDPEADEIL 272 (359)
Q Consensus 213 G~G~VG~~~a~~L~~~----GakvvavsD~~~~~I~~~------------na----~~i~akiVvegAN~p~t~ea~~~L 272 (359)
|||+||+.+++.|.+. +.++++|+|++ ..++.. +. ......+|+|.+......+.-...
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~~~~~~~~~~~ 79 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS-MLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSSEAVAEYYEKA 79 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESS-EEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECC-chhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCchHHHHHHHHH
Confidence 8999999999999865 78999999987 222211 11 223688999997654434444445
Q ss_pred HhCCCeEeccccccccCcc
Q 018214 273 SKKGVVILPDIYANSGGVT 291 (359)
Q Consensus 273 ~~rGI~viPD~laNaGGVi 291 (359)
.++|+-++. +|.|...
T Consensus 80 L~~G~~VVt---~nk~ala 95 (117)
T PF03447_consen 80 LERGKHVVT---ANKGALA 95 (117)
T ss_dssp HHTTCEEEE---S-HHHHH
T ss_pred HHCCCeEEE---ECHHHhh
Confidence 578888764 7776664
No 78
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.21 E-value=0.071 Score=52.04 Aligned_cols=76 Identities=22% Similarity=0.283 Sum_probs=58.5
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeecCCCCCccccccccc--ccceEEEe
Q 018214 182 EAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDITGGVLNKENAAD--VKAKFIIE 258 (359)
Q Consensus 182 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~v~VqG-~G~VG~~~a~~L~~~GakvvavsD~~~~~I~~~na~~--i~akiVve 258 (359)
.++|..|+.. ++++.+.+++|++|+|.| ..-||.-+|.+|.+.||.|. ++++.. .|... -+|.||+-
T Consensus 138 ~PcTp~av~~----lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt-~chs~t-----~~l~~~~~~ADIvI~ 207 (284)
T PRK14190 138 LPCTPHGILE----LLKEYNIDISGKHVVVVGRSNIVGKPVGQLLLNENATVT-YCHSKT-----KNLAELTKQADILIV 207 (284)
T ss_pred CCCCHHHHHH----HHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEE-EEeCCc-----hhHHHHHHhCCEEEE
Confidence 4688877654 556678999999999999 67889999999999999998 777632 23332 26889998
Q ss_pred cCCCC--CCHH
Q 018214 259 AANHP--TDPE 267 (359)
Q Consensus 259 gAN~p--~t~e 267 (359)
+..-| ++++
T Consensus 208 AvG~p~~i~~~ 218 (284)
T PRK14190 208 AVGKPKLITAD 218 (284)
T ss_pred ecCCCCcCCHH
Confidence 88877 4544
No 79
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=95.20 E-value=0.082 Score=51.97 Aligned_cols=72 Identities=21% Similarity=0.219 Sum_probs=56.7
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeecCCCCCccccccccc--ccceEEEe
Q 018214 182 EAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDITGGVLNKENAAD--VKAKFIIE 258 (359)
Q Consensus 182 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~v~VqG-~G~VG~~~a~~L~~~GakvvavsD~~~~~I~~~na~~--i~akiVve 258 (359)
.++|..|+... +++.+.+++|++|+|.| ..-||.-+|.+|.++||.|+ ++++. | .|... -+|.||+-
T Consensus 147 ~PcTp~avi~l----L~~~~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVt-vchs~----T-~nl~~~~~~ADIvv~ 216 (299)
T PLN02516 147 LPCTPKGCLEL----LSRSGIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVT-VVHSR----T-PDPESIVREADIVIA 216 (299)
T ss_pred CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE-EeCCC----C-CCHHHHHhhCCEEEE
Confidence 57898886654 45678999999999999 56789999999999999998 88774 2 23333 26889998
Q ss_pred cCCCC
Q 018214 259 AANHP 263 (359)
Q Consensus 259 gAN~p 263 (359)
++.-|
T Consensus 217 AvGk~ 221 (299)
T PLN02516 217 AAGQA 221 (299)
T ss_pred cCCCc
Confidence 88777
No 80
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=95.19 E-value=0.027 Score=48.50 Aligned_cols=63 Identities=17% Similarity=0.249 Sum_probs=46.0
Q ss_pred CCCCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC------------CCcccccccccc-----cceEEEecCCCCC
Q 018214 202 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT------------GGVLNKENAADV-----KAKFIIEAANHPT 264 (359)
Q Consensus 202 ~~l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~------------~~~I~~~na~~i-----~akiVvegAN~p~ 264 (359)
.++++++|.|.|.|.+|+.++..|.+.|++-|.|+..+ +..+.....+.+ ++.+|+-+...+.
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~ 87 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGM 87 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTS
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCC
Confidence 37899999999999999999999999999855588776 121222222222 5788888877763
No 81
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.18 E-value=0.09 Score=54.18 Aligned_cols=39 Identities=26% Similarity=0.339 Sum_probs=33.9
Q ss_pred HhCCCCCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCC
Q 018214 199 EHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI 238 (359)
Q Consensus 199 ~~g~~l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~ 238 (359)
.++.++++++|.|.|.|..|..+|+.|.+.|++|+ ++|.
T Consensus 9 ~~~~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~-~~d~ 47 (480)
T PRK01438 9 SWHSDWQGLRVVVAGLGVSGFAAADALLELGARVT-VVDD 47 (480)
T ss_pred hcccCcCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeC
Confidence 44566789999999999999999999999999987 6664
No 82
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=95.18 E-value=0.08 Score=47.01 Aligned_cols=34 Identities=24% Similarity=0.244 Sum_probs=31.2
Q ss_pred CCCCCCEEEEEeccchHHHHHHHHHHCCCEEEee
Q 018214 202 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAV 235 (359)
Q Consensus 202 ~~l~g~~v~VqG~G~VG~~~a~~L~~~Gakvvav 235 (359)
++++|++|.|.|-|+||...++.|.+.|++|+=|
T Consensus 9 l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VI 42 (157)
T PRK06719 9 FNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVV 42 (157)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence 4689999999999999999999999999999744
No 83
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.17 E-value=0.068 Score=54.40 Aligned_cols=36 Identities=31% Similarity=0.463 Sum_probs=32.5
Q ss_pred CCCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 203 SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 203 ~l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
++++++|.|.|.|.+|..+|+.|++.|++|+ ++|.+
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~-~~d~~ 37 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVI-LTDEK 37 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeCC
Confidence 4688999999999999999999999999988 66765
No 84
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=95.15 E-value=0.035 Score=55.74 Aligned_cols=54 Identities=19% Similarity=0.306 Sum_probs=43.7
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 182 EAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 182 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
.--||.+.+-++..+ .+.-+.||.|+|-|||.||+.+|..|...||+|+ |++.|
T Consensus 188 rYGtgqS~~DgI~Ra---Tn~liaGK~vVV~GYG~vGrG~A~~~rg~GA~Vi-VtEvD 241 (420)
T COG0499 188 RYGTGQSLLDGILRA---TNVLLAGKNVVVAGYGWVGRGIAMRLRGMGARVI-VTEVD 241 (420)
T ss_pred ccccchhHHHHHHhh---hceeecCceEEEecccccchHHHHHhhcCCCeEE-EEecC
Confidence 344666655554443 3555899999999999999999999999999998 99988
No 85
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.09 E-value=0.088 Score=51.28 Aligned_cols=90 Identities=23% Similarity=0.306 Sum_probs=66.9
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCEEEEEecc-chHHHHHHHHHHCCCEEEeecCCCCCccccccccc--ccceEEEe
Q 018214 182 EAATGLGVFFATEALLAEHGKSISNMKFAIQGFG-NVGSWAAKFFHEHGGKVVAVSDITGGVLNKENAAD--VKAKFIIE 258 (359)
Q Consensus 182 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~v~VqG~G-~VG~~~a~~L~~~GakvvavsD~~~~~I~~~na~~--i~akiVve 258 (359)
.+.|..|+... +++.+.+++|++|+|.|-+ .||..+|.+|.+.|+.|. +++++. .|..+ -+|.+|+.
T Consensus 132 ~PcTp~av~~l----l~~~~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVt-v~hs~t-----~~L~~~~~~ADIvI~ 201 (279)
T PRK14178 132 APCTPNGIMTL----LHEYKISIAGKRAVVVGRSIDVGRPMAALLLNADATVT-ICHSKT-----ENLKAELRQADILVS 201 (279)
T ss_pred CCCCHHHHHHH----HHHcCCCCCCCEEEEECCCccccHHHHHHHHhCCCeeE-EEecCh-----hHHHHHHhhCCEEEE
Confidence 57888887654 5567899999999999988 999999999999999987 776632 33332 27889999
Q ss_pred cCCCC--CCHHHHHHHHhCCCeEecccccc
Q 018214 259 AANHP--TDPEADEILSKKGVVILPDIYAN 286 (359)
Q Consensus 259 gAN~p--~t~ea~~~L~~rGI~viPD~laN 286 (359)
+..-| ++++- + +.|- ++=|+-.|
T Consensus 202 Avgk~~lv~~~~---v-k~Ga-vVIDVgi~ 226 (279)
T PRK14178 202 AAGKAGFITPDM---V-KPGA-TVIDVGIN 226 (279)
T ss_pred CCCcccccCHHH---c-CCCc-EEEEeecc
Confidence 98766 46543 3 5564 45566666
No 86
>PRK08328 hypothetical protein; Provisional
Probab=95.09 E-value=0.041 Score=51.78 Aligned_cols=36 Identities=25% Similarity=0.368 Sum_probs=32.1
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
+++++|.|.|+|-+|+.+++.|...|..=+.+.|.|
T Consensus 25 L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D 60 (231)
T PRK08328 25 LKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ 60 (231)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 578899999999999999999999998666588877
No 87
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=95.08 E-value=0.26 Score=50.45 Aligned_cols=35 Identities=17% Similarity=0.322 Sum_probs=32.0
Q ss_pred CCCCCCEEEEEeccchHHHHHHHHHHCCCEEEeec
Q 018214 202 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVS 236 (359)
Q Consensus 202 ~~l~g~~v~VqG~G~VG~~~a~~L~~~Gakvvavs 236 (359)
.+|.|+||-|.|+|++|+.+|+.|...|.+|++..
T Consensus 147 ~~L~gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d 181 (409)
T PRK11790 147 FEVRGKTLGIVGYGHIGTQLSVLAESLGMRVYFYD 181 (409)
T ss_pred ccCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEC
Confidence 45899999999999999999999999999999553
No 88
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.06 E-value=0.084 Score=51.56 Aligned_cols=90 Identities=17% Similarity=0.273 Sum_probs=64.4
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeecCCCCCccccccccc--ccceEEEe
Q 018214 182 EAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDITGGVLNKENAAD--VKAKFIIE 258 (359)
Q Consensus 182 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~v~VqG-~G~VG~~~a~~L~~~GakvvavsD~~~~~I~~~na~~--i~akiVve 258 (359)
.++|..|+... +++.|.+++||+|+|.| ..-||.-+|.+|.+.||.|+ ++++. | .|.+. -+|.||+-
T Consensus 137 ~PcTp~avi~l----L~~~~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt-ichs~----T-~~l~~~~~~ADIvI~ 206 (284)
T PRK14170 137 VPCTPAGIIEL----IKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVT-IAHSR----T-KDLPQVAKEADILVV 206 (284)
T ss_pred CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCCC----C-CCHHHHHhhCCEEEE
Confidence 57888777654 45679999999999999 56689999999999999998 77763 2 23333 26889998
Q ss_pred cCCCC--CCHHHHHHHHhCCCeEecccccc
Q 018214 259 AANHP--TDPEADEILSKKGVVILPDIYAN 286 (359)
Q Consensus 259 gAN~p--~t~ea~~~L~~rGI~viPD~laN 286 (359)
++.-| ++++- + +.|. ++=|+=.|
T Consensus 207 AvG~~~~i~~~~---v-k~Ga-vVIDvGin 231 (284)
T PRK14170 207 ATGLAKFVKKDY---I-KPGA-IVIDVGMD 231 (284)
T ss_pred ecCCcCccCHHH---c-CCCC-EEEEccCc
Confidence 88887 55442 2 3354 33455545
No 89
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=95.05 E-value=0.36 Score=47.80 Aligned_cols=35 Identities=20% Similarity=0.324 Sum_probs=31.2
Q ss_pred CCCCCCCEEEEEeccchHHHHHHHHH-HCCCEEEee
Q 018214 201 GKSISNMKFAIQGFGNVGSWAAKFFH-EHGGKVVAV 235 (359)
Q Consensus 201 g~~l~g~~v~VqG~G~VG~~~a~~L~-~~Gakvvav 235 (359)
|.+|.|+|+.|.|+|++|+.+|+.|. -.|.+|++.
T Consensus 140 g~~L~gktvGIiG~G~IG~~va~~l~~~fgm~V~~~ 175 (323)
T PRK15409 140 GTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYN 175 (323)
T ss_pred cCCCCCCEEEEEcccHHHHHHHHHHHhcCCCEEEEE
Confidence 34689999999999999999999997 899999844
No 90
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.02 E-value=0.1 Score=50.98 Aligned_cols=77 Identities=19% Similarity=0.259 Sum_probs=59.4
Q ss_pred CCchhHHHHHHHHHHHHHHhCCCCCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeecCCCCCccccccccc--ccceEEE
Q 018214 181 REAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDITGGVLNKENAAD--VKAKFII 257 (359)
Q Consensus 181 r~~aTg~Gv~~~~~~~~~~~g~~l~g~~v~VqG-~G~VG~~~a~~L~~~GakvvavsD~~~~~I~~~na~~--i~akiVv 257 (359)
..++|..|+... +++++.+++|++|+|.| ..-||.-+|.+|.+.||.|+ ++++.. .|... -+|.||+
T Consensus 135 ~~PcTp~avi~l----L~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt-ichs~T-----~~l~~~~~~ADIvI 204 (282)
T PRK14169 135 VVASTPYGIMAL----LDAYDIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVT-IAHSKT-----RNLKQLTKEADILV 204 (282)
T ss_pred CCCCCHHHHHHH----HHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE-EECCCC-----CCHHHHHhhCCEEE
Confidence 357898887654 55678999999999999 56789999999999999998 777631 23332 2788999
Q ss_pred ecCCCC--CCHH
Q 018214 258 EAANHP--TDPE 267 (359)
Q Consensus 258 egAN~p--~t~e 267 (359)
-+..-| ++++
T Consensus 205 ~AvG~p~~i~~~ 216 (282)
T PRK14169 205 VAVGVPHFIGAD 216 (282)
T ss_pred EccCCcCccCHH
Confidence 998888 5654
No 91
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.01 E-value=0.049 Score=54.43 Aligned_cols=77 Identities=26% Similarity=0.411 Sum_probs=59.3
Q ss_pred CCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC-----------CCccc---cccccccc--ceEEEecCCCC-CCHH
Q 018214 205 SNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT-----------GGVLN---KENAADVK--AKFIIEAANHP-TDPE 267 (359)
Q Consensus 205 ~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~-----------~~~I~---~~na~~i~--akiVvegAN~p-~t~e 267 (359)
.|++|+|.|+|-+|..+.++....||+|++++-+. ..+|+ ++-.+.++ +.+|++-++ + +-..
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~~~~~~ 244 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-PATLEP 244 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-hhhHHH
Confidence 58999999999999999999899999999776544 23344 34445555 889999999 6 4467
Q ss_pred HHHHHHhCCCeEecc
Q 018214 268 ADEILSKKGVVILPD 282 (359)
Q Consensus 268 a~~~L~~rGI~viPD 282 (359)
+-+.|+..|.+++=.
T Consensus 245 ~l~~l~~~G~~v~vG 259 (339)
T COG1064 245 SLKALRRGGTLVLVG 259 (339)
T ss_pred HHHHHhcCCEEEEEC
Confidence 778899999887533
No 92
>PLN03139 formate dehydrogenase; Provisional
Probab=95.01 E-value=0.22 Score=50.70 Aligned_cols=37 Identities=11% Similarity=0.167 Sum_probs=32.8
Q ss_pred CCCCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 202 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 202 ~~l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
.+|.|+||.|.|+|++|+.+|+.|...|.+|++ .|.+
T Consensus 195 ~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~-~d~~ 231 (386)
T PLN03139 195 YDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLY-HDRL 231 (386)
T ss_pred cCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEE-ECCC
Confidence 358999999999999999999999999999984 5643
No 93
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=95.00 E-value=0.074 Score=49.67 Aligned_cols=78 Identities=18% Similarity=0.241 Sum_probs=58.0
Q ss_pred CCCCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC---------CCcccc--cc--cc-cccceEEEecCCCC-CCH
Q 018214 202 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT---------GGVLNK--EN--AA-DVKAKFIIEAANHP-TDP 266 (359)
Q Consensus 202 ~~l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~---------~~~I~~--~n--a~-~i~akiVvegAN~p-~t~ 266 (359)
.+++|++|+|.|-|.||..=++.|++.|++|+-+|+.- .+.|+- +. .+ -..|-+|+=+.|.+ +..
T Consensus 8 ~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~~~~~~lviaAt~d~~ln~ 87 (210)
T COG1648 8 LDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAEDLDDAFLVIAATDDEELNE 87 (210)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChhhhcCceEEEEeCCCHHHHH
Confidence 35899999999999999999999999999998787765 111110 00 11 12488888888887 677
Q ss_pred HHHHHHHhCCCeE
Q 018214 267 EADEILSKKGVVI 279 (359)
Q Consensus 267 ea~~~L~~rGI~v 279 (359)
+..+...+++|+|
T Consensus 88 ~i~~~a~~~~i~v 100 (210)
T COG1648 88 RIAKAARERRILV 100 (210)
T ss_pred HHHHHHHHhCCce
Confidence 7778888888864
No 94
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=94.99 E-value=0.12 Score=50.60 Aligned_cols=73 Identities=25% Similarity=0.380 Sum_probs=50.4
Q ss_pred HHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC-----------CC-ccccccccc--ccceEEE
Q 018214 192 ATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT-----------GG-VLNKENAAD--VKAKFII 257 (359)
Q Consensus 192 ~~~~~~~~~g~~l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~-----------~~-~I~~~na~~--i~akiVv 257 (359)
+++.+...++. +.+++|.|.|+|.+|..+++.|.+.|++.|.++|.+ +. .++.++... -++.+|+
T Consensus 165 Av~~a~~~~~~-l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi 243 (311)
T cd05213 165 AVELAEKIFGN-LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVI 243 (311)
T ss_pred HHHHHHHHhCC-ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEE
Confidence 34444434443 789999999999999999999998887656588876 21 222121111 1578999
Q ss_pred ecCCCCCC
Q 018214 258 EAANHPTD 265 (359)
Q Consensus 258 egAN~p~t 265 (359)
.+...|..
T Consensus 244 ~at~~~~~ 251 (311)
T cd05213 244 SATGAPHY 251 (311)
T ss_pred ECCCCCch
Confidence 99888866
No 95
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.94 E-value=0.098 Score=51.04 Aligned_cols=76 Identities=20% Similarity=0.248 Sum_probs=58.5
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeecCCCCCccccccccc--ccceEEEe
Q 018214 182 EAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDITGGVLNKENAAD--VKAKFIIE 258 (359)
Q Consensus 182 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~v~VqG-~G~VG~~~a~~L~~~GakvvavsD~~~~~I~~~na~~--i~akiVve 258 (359)
.++|..|++.. +++.+.+++|++|+|.| ...||.-+|.+|.+.||.|+ +|++. | .|... -+|.||+-
T Consensus 138 ~PcTp~aii~l----L~~y~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt-~chs~----T-~dl~~~~k~ADIvIs 207 (282)
T PRK14180 138 ESCTPKGIMTM----LREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVT-TCHRF----T-TDLKSHTTKADILIV 207 (282)
T ss_pred CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EEcCC----C-CCHHHHhhhcCEEEE
Confidence 57888887655 45578999999999999 57789999999999999997 77663 2 23332 26889998
Q ss_pred cCCCC--CCHH
Q 018214 259 AANHP--TDPE 267 (359)
Q Consensus 259 gAN~p--~t~e 267 (359)
++.-| ++++
T Consensus 208 AvGkp~~i~~~ 218 (282)
T PRK14180 208 AVGKPNFITAD 218 (282)
T ss_pred ccCCcCcCCHH
Confidence 88887 5654
No 96
>PLN02700 homoserine dehydrogenase family protein
Probab=94.93 E-value=0.072 Score=54.00 Aligned_cols=88 Identities=19% Similarity=0.249 Sum_probs=61.3
Q ss_pred CEEEEEeccchHHHHHHHHHH-------CC--CEEEeecCCCCCccccc---------c---------------------
Q 018214 207 MKFAIQGFGNVGSWAAKFFHE-------HG--GKVVAVSDITGGVLNKE---------N--------------------- 247 (359)
Q Consensus 207 ~~v~VqG~G~VG~~~a~~L~~-------~G--akvvavsD~~~~~I~~~---------n--------------------- 247 (359)
..++|.|+|+||+.+++.|.+ .| .+|++|+|+.+..++++ +
T Consensus 4 i~i~liG~G~VG~~ll~ql~~~~~~~~~~gi~l~v~~ia~s~~~l~~~~~~~~Gldl~~~~~~~~~~~~~~~~~~~~~~~ 83 (377)
T PLN02700 4 IPVLLLGCGGVGRHLLRHIVSCRSLHAKQGVRIRVVGVCDSKSLVLAEDVLNEELDDALLSEVCLAKSKGSPLSALGALA 83 (377)
T ss_pred EEEEEEecChHHHHHHHHHHHHHHHHHhcCceEEEEEEECCCceEECCccccCCCCHHHHHHHHHhhccccchhhhhhcc
Confidence 468999999999999987643 24 47899999884444421 0
Q ss_pred ---------------c------ccccceEEEecCCCCCCHHHHHHHHhCCCeEeccccccccCcchhhHhh
Q 018214 248 ---------------A------ADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEW 297 (359)
Q Consensus 248 ---------------a------~~i~akiVvegAN~p~t~ea~~~L~~rGI~viPD~laNaGGVi~s~~E~ 297 (359)
. ..+...++||..+...+.+....+.++|+.|| .+|.+.+..++-||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ViVD~T~s~~~~~~y~~aL~~G~hVV---TaNK~~~a~~~~~~ 151 (377)
T PLN02700 84 GGCQVFNNSELSRKVIDIATLLGKSTGLVVVDCSASMETIGALNEAVDLGCCIV---LANKKPLTSTLEDY 151 (377)
T ss_pred ccccccccccccchhhhHHHHhhccCCCEEEECCCChHHHHHHHHHHHCCCeEE---cCCchHhccCHHHH
Confidence 0 01235788888887555556666788999886 48887777666554
No 97
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.88 E-value=0.11 Score=50.98 Aligned_cols=76 Identities=24% Similarity=0.279 Sum_probs=57.8
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeecCCCCCccccccccc--ccceEEEe
Q 018214 182 EAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDITGGVLNKENAAD--VKAKFIIE 258 (359)
Q Consensus 182 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~v~VqG-~G~VG~~~a~~L~~~GakvvavsD~~~~~I~~~na~~--i~akiVve 258 (359)
.++|..|+.. ++++.+.+++|++|+|.| ..-||.-++.+|.++||.|+ ++++. | .|.+. -+|.||+-
T Consensus 138 ~PcTp~aii~----lL~~~~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVt-v~hs~----T-~~l~~~~~~ADIvIs 207 (297)
T PRK14186 138 RSCTPAGVMR----LLRSQQIDIAGKKAVVVGRSILVGKPLALMLLAANATVT-IAHSR----T-QDLASITREADILVA 207 (297)
T ss_pred CCCCHHHHHH----HHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE-EeCCC----C-CCHHHHHhhCCEEEE
Confidence 4678777654 456678999999999999 56789999999999999997 77663 2 23333 26888888
Q ss_pred cCCCC--CCHH
Q 018214 259 AANHP--TDPE 267 (359)
Q Consensus 259 gAN~p--~t~e 267 (359)
+..-| ++++
T Consensus 208 AvGkp~~i~~~ 218 (297)
T PRK14186 208 AAGRPNLIGAE 218 (297)
T ss_pred ccCCcCccCHH
Confidence 88777 5544
No 98
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.86 E-value=0.11 Score=50.82 Aligned_cols=76 Identities=25% Similarity=0.233 Sum_probs=59.2
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeecCCCCCccccccccc--ccceEEEe
Q 018214 182 EAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDITGGVLNKENAAD--VKAKFIIE 258 (359)
Q Consensus 182 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~v~VqG-~G~VG~~~a~~L~~~GakvvavsD~~~~~I~~~na~~--i~akiVve 258 (359)
.++|..|++.. +++.+.+++|++|+|.| ...||.-+|.+|.+.||.|+ +|++. | .|... -+|.||+-
T Consensus 137 ~PcTp~avi~l----L~~y~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt-~chs~----T-~nl~~~~~~ADIvIs 206 (282)
T PRK14166 137 LPCTPLGVMKL----LKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVS-VCHIK----T-KDLSLYTRQADLIIV 206 (282)
T ss_pred cCCCHHHHHHH----HHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCCC----C-CCHHHHHhhCCEEEE
Confidence 47888887655 45578999999999999 56789999999999999998 77763 2 23332 27889999
Q ss_pred cCCCC--CCHH
Q 018214 259 AANHP--TDPE 267 (359)
Q Consensus 259 gAN~p--~t~e 267 (359)
++.-| ++++
T Consensus 207 AvGkp~~i~~~ 217 (282)
T PRK14166 207 AAGCVNLLRSD 217 (282)
T ss_pred cCCCcCccCHH
Confidence 98888 5654
No 99
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=94.86 E-value=0.045 Score=54.56 Aligned_cols=36 Identities=22% Similarity=0.316 Sum_probs=31.7
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
|+.++|.|.|+|.+|+.+|++|...|..=+.+.|.+
T Consensus 22 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 22 LREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 688999999999999999999999998444487876
No 100
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.78 E-value=0.083 Score=54.98 Aligned_cols=79 Identities=14% Similarity=0.231 Sum_probs=53.4
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCCCCccc------------ccccccc-cceEEEecCCCCCCHHHHH
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGGVLN------------KENAADV-KAKFIIEAANHPTDPEADE 270 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~~~~I~------------~~na~~i-~akiVvegAN~p~t~ea~~ 270 (359)
..|++|.|.|+|..|..++++|++.|++|+ ++|.....+. ....+.+ .+.+|+...--|.+...-+
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~-~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpGi~~~~p~~~ 88 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGARPT-VCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPGFRPTAPVLA 88 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCEEE-EEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCCCCCCCHHHH
Confidence 468999999999999999999999999998 6886411110 0011112 3556776666664433345
Q ss_pred HHHhCCCeEeccc
Q 018214 271 ILSKKGVVILPDI 283 (359)
Q Consensus 271 ~L~~rGI~viPD~ 283 (359)
..+++||.++-++
T Consensus 89 ~a~~~gi~v~~~i 101 (488)
T PRK03369 89 AAAAAGVPIWGDV 101 (488)
T ss_pred HHHHCCCcEeeHH
Confidence 5678888888653
No 101
>PRK06487 glycerate dehydrogenase; Provisional
Probab=94.78 E-value=0.13 Score=50.76 Aligned_cols=82 Identities=17% Similarity=0.250 Sum_probs=58.2
Q ss_pred CCCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC------------------------------CCccccccccccc
Q 018214 203 SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT------------------------------GGVLNKENAADVK 252 (359)
Q Consensus 203 ~l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~------------------------------~~~I~~~na~~i~ 252 (359)
++.|+||.|.|+|++|+.+|+.|...|.+|++..... .+.||++...++|
T Consensus 145 ~l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~~~~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk 224 (317)
T PRK06487 145 ELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRPARPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMK 224 (317)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCcccccccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCC
Confidence 5899999999999999999999999999999764220 3445555555554
Q ss_pred -ceEEEecCCCC-CCHHH-HHHHHhCCCe-Eecccc
Q 018214 253 -AKFIIEAANHP-TDPEA-DEILSKKGVV-ILPDIY 284 (359)
Q Consensus 253 -akiVvegAN~p-~t~ea-~~~L~~rGI~-viPD~l 284 (359)
--+++--|-++ +..+| .+.|++.-|. ..=|+.
T Consensus 225 ~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf 260 (317)
T PRK06487 225 PGALLINTARGGLVDEQALADALRSGHLGGAATDVL 260 (317)
T ss_pred CCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecC
Confidence 45778888888 45444 4667666554 344544
No 102
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.77 E-value=0.12 Score=50.49 Aligned_cols=76 Identities=21% Similarity=0.312 Sum_probs=58.2
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeecCCCCCccccccccc--ccceEEEe
Q 018214 182 EAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDITGGVLNKENAAD--VKAKFIIE 258 (359)
Q Consensus 182 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~v~VqG-~G~VG~~~a~~L~~~GakvvavsD~~~~~I~~~na~~--i~akiVve 258 (359)
.++|..|+... +++.+.+++|++|+|.| ...||.-+|.+|.+.||.|+ ++++. |. |... -+|.||+-
T Consensus 135 ~PcTp~avi~l----L~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt-ichs~----T~-~l~~~~~~ADIvIs 204 (287)
T PRK14173 135 EPCTPAGVVRL----LKHYGIPLAGKEVVVVGRSNIVGKPLAALLLREDATVT-LAHSK----TQ-DLPAVTRRADVLVV 204 (287)
T ss_pred CCCCHHHHHHH----HHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEE-EeCCC----CC-CHHHHHhhCCEEEE
Confidence 57888887654 45678999999999999 57789999999999999987 77763 22 2222 26889988
Q ss_pred cCCCC--CCHH
Q 018214 259 AANHP--TDPE 267 (359)
Q Consensus 259 gAN~p--~t~e 267 (359)
++.-| ++++
T Consensus 205 AvGkp~~i~~~ 215 (287)
T PRK14173 205 AVGRPHLITPE 215 (287)
T ss_pred ecCCcCccCHH
Confidence 88877 4544
No 103
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=94.75 E-value=0.078 Score=51.27 Aligned_cols=79 Identities=24% Similarity=0.320 Sum_probs=58.0
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC---------CCcccccccccccceEEEecCCCCC-CHHHHHHHH
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT---------GGVLNKENAADVKAKFIIEAANHPT-DPEADEILS 273 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~---------~~~I~~~na~~i~akiVvegAN~p~-t~ea~~~L~ 273 (359)
.++.+|+|.|.|.||..+++.+...|+++|.++|.+ -.+||......-.+.+|+|..-++. -.++-+.|+
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~i~~~~~~~~g~Dvvid~~G~~~~~~~~~~~l~ 222 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEVLDPEKDPRRDYRAIYDASGDPSLIDTLVRRLA 222 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccccChhhccCCCCCEEEECCCCHHHHHHHHHhhh
Confidence 367899999999999999999889999876566655 1233322111224679999998874 477788999
Q ss_pred hCCCeEecc
Q 018214 274 KKGVVILPD 282 (359)
Q Consensus 274 ~rGI~viPD 282 (359)
..|.+++-.
T Consensus 223 ~~G~iv~~G 231 (308)
T TIGR01202 223 KGGEIVLAG 231 (308)
T ss_pred cCcEEEEEe
Confidence 999877543
No 104
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.72 E-value=0.12 Score=50.59 Aligned_cols=90 Identities=26% Similarity=0.330 Sum_probs=64.8
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCEEEEEe-ccchHHHHHHHHHH----CCCEEEeecCCCCCccccccccc--ccce
Q 018214 182 EAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHE----HGGKVVAVSDITGGVLNKENAAD--VKAK 254 (359)
Q Consensus 182 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~v~VqG-~G~VG~~~a~~L~~----~GakvvavsD~~~~~I~~~na~~--i~ak 254 (359)
.++|..|+.. ++++.+.+++||+|+|.| ..-||.-++.+|.+ .+|.|. +++++. .|... -+|.
T Consensus 137 ~PcTp~av~~----lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt-~~hs~t-----~~l~~~~~~AD 206 (286)
T PRK14184 137 RPCTPAGVMT----LLERYGLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVT-VCHSRT-----PDLAEECREAD 206 (286)
T ss_pred CCCCHHHHHH----HHHHhCCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEE-EEeCCc-----hhHHHHHHhCC
Confidence 4788887764 455678999999999999 57789999999998 889987 766632 33333 2688
Q ss_pred EEEecCCCC--CCHHHHHHHHhCCCeEecccccc
Q 018214 255 FIIEAANHP--TDPEADEILSKKGVVILPDIYAN 286 (359)
Q Consensus 255 iVvegAN~p--~t~ea~~~L~~rGI~viPD~laN 286 (359)
+|+.+..-| ++++ .+ +.|- ++=|+-.|
T Consensus 207 IVI~AvG~p~li~~~---~v-k~Ga-vVIDVGi~ 235 (286)
T PRK14184 207 FLFVAIGRPRFVTAD---MV-KPGA-VVVDVGIN 235 (286)
T ss_pred EEEEecCCCCcCCHH---Hc-CCCC-EEEEeeee
Confidence 999999888 4543 23 5554 34455544
No 105
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.72 E-value=0.18 Score=49.51 Aligned_cols=104 Identities=24% Similarity=0.339 Sum_probs=73.2
Q ss_pred CCCCCCEEEEEecc-chHHHHHHHHHHCCCEEEeecCCCCCccccccccccc----ce-EEEecCCCC-CCHHHHHHHHh
Q 018214 202 KSISNMKFAIQGFG-NVGSWAAKFFHEHGGKVVAVSDITGGVLNKENAADVK----AK-FIIEAANHP-TDPEADEILSK 274 (359)
Q Consensus 202 ~~l~g~~v~VqG~G-~VG~~~a~~L~~~GakvvavsD~~~~~I~~~na~~i~----ak-iVvegAN~p-~t~ea~~~L~~ 274 (359)
.+++|+.|.|.|.| -+|+..|..++++|++++ +.|++ ..-+++++++++ |+ ++|.-.|-- +..-|.++=++
T Consensus 34 k~v~g~~vLITGgg~GlGr~ialefa~rg~~~v-l~Din-~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~e 111 (300)
T KOG1201|consen 34 KSVSGEIVLITGGGSGLGRLIALEFAKRGAKLV-LWDIN-KQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKKE 111 (300)
T ss_pred hhccCCEEEEeCCCchHHHHHHHHHHHhCCeEE-EEecc-ccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHHh
Confidence 45899999999976 489999999999999888 88985 333555555555 43 677777654 55556666677
Q ss_pred CCCeEeccccccccCcchhhHhhhhcccccccCHHHHHHHHHH
Q 018214 275 KGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKR 317 (359)
Q Consensus 275 rGI~viPD~laNaGGVi~s~~E~~~n~~~~~w~~e~v~~~l~~ 317 (359)
-| =+|++.|-.||.... .-+.-++|++++-++=
T Consensus 112 ~G---~V~ILVNNAGI~~~~-------~ll~~~d~ei~k~~~v 144 (300)
T KOG1201|consen 112 VG---DVDILVNNAGIVTGK-------KLLDCSDEEIQKTFDV 144 (300)
T ss_pred cC---CceEEEeccccccCC-------CccCCCHHHHHHHHHH
Confidence 77 568899999996542 1223456666664433
No 106
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.72 E-value=0.14 Score=50.24 Aligned_cols=72 Identities=17% Similarity=0.208 Sum_probs=55.6
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCEEEEEe-ccchHHHHHHHHHH----CCCEEEeecCCCCCccccccccc--ccce
Q 018214 182 EAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHE----HGGKVVAVSDITGGVLNKENAAD--VKAK 254 (359)
Q Consensus 182 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~v~VqG-~G~VG~~~a~~L~~----~GakvvavsD~~~~~I~~~na~~--i~ak 254 (359)
.++|..|+ -+.++..+.+++||+|+|.| ..-||.-+|.+|.+ .++.|. ++.++. .|... -+|-
T Consensus 139 ~PcTp~ai----l~ll~~y~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt-~~hs~t-----~~l~~~~~~AD 208 (295)
T PRK14174 139 VSCTPYGI----LELLGRYNIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVT-ICHSAT-----KDIPSYTRQAD 208 (295)
T ss_pred CCCCHHHH----HHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEE-EEeCCc-----hhHHHHHHhCC
Confidence 57898886 45566778999999999999 56789999999987 689887 766632 33333 2688
Q ss_pred EEEecCCCC
Q 018214 255 FIIEAANHP 263 (359)
Q Consensus 255 iVvegAN~p 263 (359)
+|+.+..-|
T Consensus 209 IvI~Avg~~ 217 (295)
T PRK14174 209 ILIAAIGKA 217 (295)
T ss_pred EEEEecCcc
Confidence 999999777
No 107
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=94.70 E-value=0.16 Score=51.18 Aligned_cols=77 Identities=22% Similarity=0.254 Sum_probs=59.8
Q ss_pred CCchhHHHHHHHHHHHHHHhCCCCCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeecCCCCCccccccccc--ccceEEE
Q 018214 181 REAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDITGGVLNKENAAD--VKAKFII 257 (359)
Q Consensus 181 r~~aTg~Gv~~~~~~~~~~~g~~l~g~~v~VqG-~G~VG~~~a~~L~~~GakvvavsD~~~~~I~~~na~~--i~akiVv 257 (359)
-.+.|..|+. ++|++.+.+++||+|+|.| ..-||.-+|.+|.+.+|.|. ++.+. | .|... -+|.||+
T Consensus 210 f~PCTp~avi----elL~~y~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVT-icHs~----T-~nl~~~~r~ADIVI 279 (364)
T PLN02616 210 FVPCTPKGCI----ELLHRYNVEIKGKRAVVIGRSNIVGMPAALLLQREDATVS-IVHSR----T-KNPEEITREADIII 279 (364)
T ss_pred CCCCCHHHHH----HHHHHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCeEE-EeCCC----C-CCHHHHHhhCCEEE
Confidence 4589998865 4556678999999999999 67789999999999999998 77763 1 23333 2788999
Q ss_pred ecCCCC--CCHH
Q 018214 258 EAANHP--TDPE 267 (359)
Q Consensus 258 egAN~p--~t~e 267 (359)
-++--| ++++
T Consensus 280 sAvGkp~~i~~d 291 (364)
T PLN02616 280 SAVGQPNMVRGS 291 (364)
T ss_pred EcCCCcCcCCHH
Confidence 888877 4544
No 108
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=94.69 E-value=0.094 Score=49.29 Aligned_cols=55 Identities=27% Similarity=0.339 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHCCCE--EEeecCCC
Q 018214 185 TGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGK--VVAVSDIT 239 (359)
Q Consensus 185 Tg~Gv~~~~~~~~~~~g~~l~g~~v~VqG~G~VG~~~a~~L~~~Gak--vvavsD~~ 239 (359)
|+-=+..++..+++..+.+++++||.|.|.|.+|..+|+.|.+.|++ -+-+.|.+
T Consensus 4 t~~v~lAG~~~al~~~g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 4 TAIVTLAGLLNALKLVGKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred hHHHHHHHHHHHHHHhCCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 44444556666777778889999999999999999999999999987 44588886
No 109
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=94.68 E-value=0.37 Score=50.82 Aligned_cols=125 Identities=21% Similarity=0.233 Sum_probs=74.6
Q ss_pred CCCCCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC-------------------------------------CCcc
Q 018214 201 GKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT-------------------------------------GGVL 243 (359)
Q Consensus 201 g~~l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~-------------------------------------~~~I 243 (359)
|.+|.|+||.|.|+|++|+.+|+.|...|.+|++. |.+ .+.|
T Consensus 133 g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~-d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li 211 (525)
T TIGR01327 133 GTELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAY-DPYISPERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLI 211 (525)
T ss_pred ccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEE-CCCCChhHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCc
Confidence 44689999999999999999999999999999955 431 2334
Q ss_pred ccccccccc-ceEEEecCCCC-CCHHH-HHHHHhCCCe-EeccccccccCcchhhHhhhhc---ccccccCHHHHHHHHH
Q 018214 244 NKENAADVK-AKFIIEAANHP-TDPEA-DEILSKKGVV-ILPDIYANSGGVTVSYFEWVQN---IQGFMWEEEKVNHELK 316 (359)
Q Consensus 244 ~~~na~~i~-akiVvegAN~p-~t~ea-~~~L~~rGI~-viPD~laNaGGVi~s~~E~~~n---~~~~~w~~e~v~~~l~ 316 (359)
+++....++ -.+++.-|-++ +..+| .+.|++.-|. ..=|+..+=--. -+.+.-..| .+|..|..++...++.
T Consensus 212 ~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~-~~pL~~~~nvi~TPHia~~t~e~~~~~~ 290 (525)
T TIGR01327 212 GAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEPPT-DNPLFDLDNVIATPHLGASTREAQENVA 290 (525)
T ss_pred CHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCCC-CChhhcCCCeEECCCccccHHHHHHHHH
Confidence 333333332 34777778887 44444 4677777664 344544332211 111111111 1355565556666665
Q ss_pred HHHHHHHHHHH
Q 018214 317 RYMMSAFKDIK 327 (359)
Q Consensus 317 ~~m~~~~~~v~ 327 (359)
..+.+.+.+.+
T Consensus 291 ~~~~~ni~~~~ 301 (525)
T TIGR01327 291 TQVAEQVLDAL 301 (525)
T ss_pred HHHHHHHHHHH
Confidence 55555555554
No 110
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=94.67 E-value=0.051 Score=48.39 Aligned_cols=85 Identities=26% Similarity=0.363 Sum_probs=53.1
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC-----------CCcccc---------------------c---cc
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT-----------GGVLNK---------------------E---NA 248 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~-----------~~~I~~---------------------~---na 248 (359)
+...+|+|.|.|+||..+++.|..+|++++ +.|.. ...+.- . +.
T Consensus 18 ~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~-~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 96 (168)
T PF01262_consen 18 VPPAKVVVTGAGRVGQGAAEIAKGLGAEVV-VPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNF 96 (168)
T ss_dssp E-T-EEEEESTSHHHHHHHHHHHHTT-EEE-EEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHH
T ss_pred CCCeEEEEECCCHHHHHHHHHHhHCCCEEE-eccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHH
Confidence 566899999999999999999999999998 66665 111111 1 11
Q ss_pred cc-c-cceEEE-----ecCCCC--CCHHHHHHHHhCCCeEeccccccccCcc
Q 018214 249 AD-V-KAKFII-----EAANHP--TDPEADEILSKKGVVILPDIYANSGGVT 291 (359)
Q Consensus 249 ~~-i-~akiVv-----egAN~p--~t~ea~~~L~~rGI~viPD~laNaGGVi 291 (359)
.+ + .+-+|+ .+...| +|.+--+.|+ -..+|.|+.+..||-+
T Consensus 97 ~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~--~gsvIvDis~D~gG~i 146 (168)
T PF01262_consen 97 AEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMK--PGSVIVDISCDQGGSI 146 (168)
T ss_dssp HHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSS--TTEEEEETTGGGT-SB
T ss_pred HHHHhhCcEEeeecccCCCCCCEEEEhHHhhccC--CCceEEEEEecCCCCc
Confidence 11 1 344555 455666 4666545444 5589999999999875
No 111
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=94.64 E-value=0.073 Score=45.75 Aligned_cols=32 Identities=22% Similarity=0.340 Sum_probs=27.7
Q ss_pred EEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 208 KFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 208 ~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
+|.|.|+|.+|+.+++.|...|..=+.+.|.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 58999999999999999999998544488876
No 112
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.61 E-value=0.13 Score=50.29 Aligned_cols=76 Identities=18% Similarity=0.273 Sum_probs=58.3
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeecCCCCCccccccccc--ccceEEEe
Q 018214 182 EAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDITGGVLNKENAAD--VKAKFIIE 258 (359)
Q Consensus 182 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~v~VqG-~G~VG~~~a~~L~~~GakvvavsD~~~~~I~~~na~~--i~akiVve 258 (359)
.++|..|+.. ++++.+.+++||+|+|.| ..-||.-++.+|.+.||.|+ +|++.. .|... -+|.||+-
T Consensus 139 ~PcTp~av~~----lL~~y~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVt-ichs~T-----~~L~~~~~~ADIvV~ 208 (288)
T PRK14171 139 IPCTALGCLA----VIKKYEPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVT-ICHSKT-----HNLSSITSKADIVVA 208 (288)
T ss_pred cCCCHHHHHH----HHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCCCC-----CCHHHHHhhCCEEEE
Confidence 5788888654 456678999999999999 56789999999999999987 887732 23332 26889988
Q ss_pred cCCCC--CCHH
Q 018214 259 AANHP--TDPE 267 (359)
Q Consensus 259 gAN~p--~t~e 267 (359)
+.--| ++++
T Consensus 209 AvGkp~~i~~~ 219 (288)
T PRK14171 209 AIGSPLKLTAE 219 (288)
T ss_pred ccCCCCccCHH
Confidence 88877 5654
No 113
>PRK14982 acyl-ACP reductase; Provisional
Probab=94.61 E-value=0.15 Score=50.96 Aligned_cols=55 Identities=18% Similarity=0.285 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCEEEEEec-cchHHHHHHHHHH-CCC-EEEeecCCC
Q 018214 184 ATGLGVFFATEALLAEHGKSISNMKFAIQGF-GNVGSWAAKFFHE-HGG-KVVAVSDIT 239 (359)
Q Consensus 184 aTg~Gv~~~~~~~~~~~g~~l~g~~v~VqG~-G~VG~~~a~~L~~-~Ga-kvvavsD~~ 239 (359)
.|.+-....++.+.+.++.++++++|.|.|. |.+|+.+++.|.+ .|. +++ +.+.+
T Consensus 133 ~T~~ll~~~V~la~~~lg~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~li-lv~R~ 190 (340)
T PRK14982 133 HTAYVICRQVEQNAPRLGIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELL-LVARQ 190 (340)
T ss_pred hHHHHHHHHHHHhHHHhccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEE-EEcCC
Confidence 4766666788888888888999999999998 8999999999975 464 666 55554
No 114
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=94.61 E-value=0.26 Score=51.36 Aligned_cols=51 Identities=22% Similarity=0.341 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 184 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 184 aTg~Gv~~~~~~~~~~~g~~l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
--+.|...+++ +.+.+++++++.|.|.|.+|.+++..|.+.|++|+ +.+.+
T Consensus 314 TD~~G~~~~l~----~~~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~-i~~R~ 364 (477)
T PRK09310 314 TDGEGLFSLLK----QKNIPLNNQHVAIVGAGGAAKAIATTLARAGAELL-IFNRT 364 (477)
T ss_pred cCHHHHHHHHH----hcCCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEE-EEeCC
Confidence 34566666654 45677899999999999999999999999999887 66665
No 115
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=94.57 E-value=0.23 Score=49.49 Aligned_cols=126 Identities=23% Similarity=0.349 Sum_probs=80.5
Q ss_pred CCEEEEEeccchHHHHHHHHHHC----------CCEEEeecCCCCCccc-------------------ccccccccceEE
Q 018214 206 NMKFAIQGFGNVGSWAAKFFHEH----------GGKVVAVSDITGGVLN-------------------KENAADVKAKFI 256 (359)
Q Consensus 206 g~~v~VqG~G~VG~~~a~~L~~~----------GakvvavsD~~~~~I~-------------------~~na~~i~akiV 256 (359)
-.+|.|.|||+||+.+++.|.++ ..+|++|+|+++.... .+.+..-...+|
T Consensus 3 ~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvv 82 (333)
T COG0460 3 TVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLDLLNAEVWTTDGALSLGDEVLLDEDIDVV 82 (333)
T ss_pred eEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcccccccchhhheecccccccHhhhccccCCEE
Confidence 35789999999999999999763 4678899988632221 111122234578
Q ss_pred EecCCCCCCHH--HHH--HHHhCCCeEeccccccccCcchhhHhhhhccc--c--cccC---------------------
Q 018214 257 IEAANHPTDPE--ADE--ILSKKGVVILPDIYANSGGVTVSYFEWVQNIQ--G--FMWE--------------------- 307 (359)
Q Consensus 257 vegAN~p~t~e--a~~--~L~~rGI~viPD~laNaGGVi~s~~E~~~n~~--~--~~w~--------------------- 307 (359)
+|.-=.-+++. ++. ...++|..|+. +|.+.+...|.|...... + ++++
T Consensus 83 ve~~~~d~~~~~~~~~~~~al~~GkhVVT---aNK~~lA~~~~el~~~A~~~g~~l~yEAtV~gGiPiI~~lr~~l~g~~ 159 (333)
T COG0460 83 VELVGGDVEPAEPADLYLKALENGKHVVT---ANKALLALHYHELREAAEKNGVKLLYEATVGGGIPIIKLLRELLAGDE 159 (333)
T ss_pred EecCcccCCchhhHHHHHHHHHcCCeEEC---CCchHhHhhHHHHHHHHHHhCCeEEEEeeeccCcchHHHHHhhcccCc
Confidence 88765533321 343 34689999875 899999888888654322 1 2221
Q ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 018214 308 -----------EEKVNHELKRYMMSAFKDIKTMCQTHNC 335 (359)
Q Consensus 308 -----------~e~v~~~l~~~m~~~~~~v~~~a~~~~~ 335 (359)
-.-+..++++. ...|+++++.|++.|+
T Consensus 160 I~~i~GIlNGT~NyIlt~m~~~-~~~f~dal~eAq~lGy 197 (333)
T COG0460 160 ILSIRGILNGTTNYILTRMEEG-GLSFEDALAEAQELGY 197 (333)
T ss_pred eEEEEEEEeccHHHHHHHHHcc-CCCHHHHHHHHHHcCC
Confidence 11234444443 1389999999998775
No 116
>PLN02928 oxidoreductase family protein
Probab=94.51 E-value=0.11 Score=51.99 Aligned_cols=34 Identities=26% Similarity=0.380 Sum_probs=31.6
Q ss_pred CCCCCCEEEEEeccchHHHHHHHHHHCCCEEEee
Q 018214 202 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAV 235 (359)
Q Consensus 202 ~~l~g~~v~VqG~G~VG~~~a~~L~~~Gakvvav 235 (359)
.++.|+|+.|.|+|++|+.+|+.|...|.+|++.
T Consensus 155 ~~l~gktvGIiG~G~IG~~vA~~l~afG~~V~~~ 188 (347)
T PLN02928 155 DTLFGKTVFILGYGAIGIELAKRLRPFGVKLLAT 188 (347)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHhhCCCEEEEE
Confidence 4589999999999999999999999999999954
No 117
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.49 E-value=0.16 Score=49.90 Aligned_cols=76 Identities=20% Similarity=0.203 Sum_probs=59.0
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeecCCCCCccccccccc--ccceEEEe
Q 018214 182 EAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDITGGVLNKENAAD--VKAKFIIE 258 (359)
Q Consensus 182 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~v~VqG-~G~VG~~~a~~L~~~GakvvavsD~~~~~I~~~na~~--i~akiVve 258 (359)
.++|..|+. ++|++.+.+++||+|+|.| ..-||.-++.+|.+.||.|+ ++++.- .|... -+|.||+-
T Consensus 140 ~PcTp~avi----~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt-~chs~T-----~~l~~~~~~ADIvVs 209 (294)
T PRK14187 140 IPCTPKGCL----YLIKTITRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVT-TVHSAT-----RDLADYCSKADILVA 209 (294)
T ss_pred cCcCHHHHH----HHHHHhCCCCCCCEEEEECCCccchHHHHHHHhhCCCEEE-EeCCCC-----CCHHHHHhhCCEEEE
Confidence 467888875 4556678999999999999 56789999999999999998 877732 23332 27889998
Q ss_pred cCCCC--CCHH
Q 018214 259 AANHP--TDPE 267 (359)
Q Consensus 259 gAN~p--~t~e 267 (359)
++.-| ++++
T Consensus 210 AvGkp~~i~~~ 220 (294)
T PRK14187 210 AVGIPNFVKYS 220 (294)
T ss_pred ccCCcCccCHH
Confidence 88888 5654
No 118
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=94.49 E-value=1.5 Score=44.88 Aligned_cols=60 Identities=27% Similarity=0.515 Sum_probs=42.9
Q ss_pred CCCCCEEEEEeccchHHHHHHHHHHCC-CEEEeecCCC-----------C-Cccccccccc--ccceEEEecCCCC
Q 018214 203 SISNMKFAIQGFGNVGSWAAKFFHEHG-GKVVAVSDIT-----------G-GVLNKENAAD--VKAKFIIEAANHP 263 (359)
Q Consensus 203 ~l~g~~v~VqG~G~VG~~~a~~L~~~G-akvvavsD~~-----------~-~~I~~~na~~--i~akiVvegAN~p 263 (359)
++.+++|.|.|+|.+|..+++.|...| .+|+ +.+.+ + ..++.++... -+|.+|+.+...|
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~-v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s~ 251 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKIL-IANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGAP 251 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEE-EEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCCC
Confidence 478999999999999999999999999 4565 77765 1 1222222222 1678888886555
No 119
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.47 E-value=0.16 Score=49.48 Aligned_cols=76 Identities=18% Similarity=0.197 Sum_probs=58.4
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeecCCCCCcccccccccc--cceEEEe
Q 018214 182 EAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDITGGVLNKENAADV--KAKFIIE 258 (359)
Q Consensus 182 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~v~VqG-~G~VG~~~a~~L~~~GakvvavsD~~~~~I~~~na~~i--~akiVve 258 (359)
.++|..|+... +++.+.+++||+|+|.| ..-||.-++.+|.+.+|.|. ++++. | .|.... +|.||+-
T Consensus 137 ~PcTp~avi~l----l~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVt-ichs~----T-~nl~~~~~~ADIvI~ 206 (282)
T PRK14182 137 RPCTPAGVMRM----LDEARVDPKGKRALVVGRSNIVGKPMAMMLLERHATVT-IAHSR----T-ADLAGEVGRADILVA 206 (282)
T ss_pred CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCCC----C-CCHHHHHhhCCEEEE
Confidence 46888887654 55668999999999999 56789999999999999987 87763 2 233332 6889988
Q ss_pred cCCCC--CCHH
Q 018214 259 AANHP--TDPE 267 (359)
Q Consensus 259 gAN~p--~t~e 267 (359)
++--| ++++
T Consensus 207 AvGk~~~i~~~ 217 (282)
T PRK14182 207 AIGKAELVKGA 217 (282)
T ss_pred ecCCcCccCHH
Confidence 88777 5654
No 120
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=94.44 E-value=0.066 Score=53.65 Aligned_cols=78 Identities=22% Similarity=0.226 Sum_probs=56.1
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC------------------------------------------CC
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT------------------------------------------GG 241 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~------------------------------------------~~ 241 (359)
|+.++|.|.|+|.+|+.+++.|...|..=+.+.|.+ ..
T Consensus 26 L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~~ 105 (355)
T PRK05597 26 LFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVR 105 (355)
T ss_pred HhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEEe
Confidence 678999999999999999999999998666688877 22
Q ss_pred cccccccccc--cceEEEecCCCCCCHH-HHHHHHhCCCeEec
Q 018214 242 VLNKENAADV--KAKFIIEAANHPTDPE-ADEILSKKGVVILP 281 (359)
Q Consensus 242 ~I~~~na~~i--~akiVvegAN~p~t~e-a~~~L~~rGI~viP 281 (359)
.|+++|+..+ ++.+|+.+.-++.+.. ..+...+.+|.++=
T Consensus 106 ~i~~~~~~~~~~~~DvVvd~~d~~~~r~~~n~~c~~~~ip~v~ 148 (355)
T PRK05597 106 RLTWSNALDELRDADVILDGSDNFDTRHLASWAAARLGIPHVW 148 (355)
T ss_pred ecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEE
Confidence 3445554443 5778888876654432 34556777776553
No 121
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=94.34 E-value=0.063 Score=50.37 Aligned_cols=75 Identities=27% Similarity=0.395 Sum_probs=48.5
Q ss_pred CEEEEEeccchHHHHHHHHHHCCCEEEeecCCCCCcccccccccccceEEEecCCCCCCHHHHHHHHhCCCeEecccccc
Q 018214 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYAN 286 (359)
Q Consensus 207 ~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~~~~I~~~na~~i~akiVvegAN~p~t~ea~~~L~~rGI~viPD~laN 286 (359)
++++|.|.|.||+.+|+.|.+.|..|+.| |.++....+.-.+++.+.+|..-+. -.+.|++-||-=..-+++-
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~I-d~d~~~~~~~~~~~~~~~~v~gd~t------~~~~L~~agi~~aD~vva~ 73 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLI-DRDEERVEEFLADELDTHVVIGDAT------DEDVLEEAGIDDADAVVAA 73 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEE-EcCHHHHHHHhhhhcceEEEEecCC------CHHHHHhcCCCcCCEEEEe
Confidence 57999999999999999999999999844 5533333332233355555543332 1467888887544444443
Q ss_pred cc
Q 018214 287 SG 288 (359)
Q Consensus 287 aG 288 (359)
.|
T Consensus 74 t~ 75 (225)
T COG0569 74 TG 75 (225)
T ss_pred eC
Confidence 33
No 122
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=94.33 E-value=0.19 Score=52.89 Aligned_cols=83 Identities=27% Similarity=0.318 Sum_probs=57.2
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC----------CCc---ccccc-----------------------
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT----------GGV---LNKEN----------------------- 247 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~----------~~~---I~~~n----------------------- 247 (359)
..+.+|+|.|+|.+|..++..+..+|++|+ +.|.+ |.. ++...
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~-a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~ 241 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVR-AFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMAL 241 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEE-EEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHH
Confidence 469999999999999999999999999877 77877 222 22211
Q ss_pred -cccc-cceEEEecCCCCC-------CHHHHHHHHhCCCeEeccccccccC
Q 018214 248 -AADV-KAKFIIEAANHPT-------DPEADEILSKKGVVILPDIYANSGG 289 (359)
Q Consensus 248 -a~~i-~akiVvegAN~p~-------t~ea~~~L~~rGI~viPD~laNaGG 289 (359)
.+.+ .+.+|+|.+-.|- +.++-+.++..|+++ |+-+..||
T Consensus 242 ~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIV--dvg~~~GG 290 (509)
T PRK09424 242 FAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIV--DLAAENGG 290 (509)
T ss_pred HHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEE--EEccCCCC
Confidence 1112 4899999998642 567777777666543 34343445
No 123
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=94.31 E-value=0.045 Score=46.50 Aligned_cols=73 Identities=23% Similarity=0.310 Sum_probs=45.9
Q ss_pred EEEEEec-cchHHHHHHHHHH-CCCEEEeecCCCCC-cccc----------------cccccc--cceEEEecCCCCCCH
Q 018214 208 KFAIQGF-GNVGSWAAKFFHE-HGGKVVAVSDITGG-VLNK----------------ENAADV--KAKFIIEAANHPTDP 266 (359)
Q Consensus 208 ~v~VqG~-G~VG~~~a~~L~~-~GakvvavsD~~~~-~I~~----------------~na~~i--~akiVvegAN~p~t~ 266 (359)
+|.|.|+ |++|+.+++.+.+ .+..++++.|..+. .+.. ++.+.+ ++-+|++-.+.....
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT~p~~~~ 81 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFTNPDAVY 81 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES-HHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcCChHHhH
Confidence 7999999 9999999999987 89999999888641 1110 111111 356677766443444
Q ss_pred HHHHHHHhCCCeEe
Q 018214 267 EADEILSKKGVVIL 280 (359)
Q Consensus 267 ea~~~L~~rGI~vi 280 (359)
+.-+.+.++|+.++
T Consensus 82 ~~~~~~~~~g~~~V 95 (124)
T PF01113_consen 82 DNLEYALKHGVPLV 95 (124)
T ss_dssp HHHHHHHHHT-EEE
T ss_pred HHHHHHHhCCCCEE
Confidence 44555556666554
No 124
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.30 E-value=0.12 Score=50.67 Aligned_cols=72 Identities=18% Similarity=0.282 Sum_probs=54.4
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeecCCCCCccccccccc-c-cceEEEe
Q 018214 182 EAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDITGGVLNKENAAD-V-KAKFIIE 258 (359)
Q Consensus 182 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~v~VqG-~G~VG~~~a~~L~~~GakvvavsD~~~~~I~~~na~~-i-~akiVve 258 (359)
.++|..|++.. |++.+.+++|++|+|.| .|.||..+|..|.+.|+.|+ ++++... +.+. . +|.+|+-
T Consensus 138 ~PcTp~ai~~l----l~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVt-v~~~rT~-----~l~e~~~~ADIVIs 207 (296)
T PRK14188 138 VPCTPLGCMML----LRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVT-IAHSRTR-----DLPAVCRRADILVA 207 (296)
T ss_pred cCCCHHHHHHH----HHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEE-EECCCCC-----CHHHHHhcCCEEEE
Confidence 57898887654 45568899999999999 99999999999999999998 7653211 1221 1 5777777
Q ss_pred cCCCC
Q 018214 259 AANHP 263 (359)
Q Consensus 259 gAN~p 263 (359)
+...|
T Consensus 208 avg~~ 212 (296)
T PRK14188 208 AVGRP 212 (296)
T ss_pred ecCCh
Confidence 76655
No 125
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.29 E-value=0.16 Score=51.68 Aligned_cols=36 Identities=33% Similarity=0.454 Sum_probs=32.4
Q ss_pred CCCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 203 SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 203 ~l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
++++++|.|.|.|..|.++|+.|++.|++|+ ++|.+
T Consensus 2 ~~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~-~~d~~ 37 (447)
T PRK02472 2 EYQNKKVLVLGLAKSGYAAAKLLHKLGANVT-VNDGK 37 (447)
T ss_pred CcCCCEEEEEeeCHHHHHHHHHHHHCCCEEE-EEcCC
Confidence 3678999999999999999999999999998 77864
No 126
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.22 E-value=0.13 Score=53.30 Aligned_cols=35 Identities=17% Similarity=0.251 Sum_probs=32.3
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
++|++|.|.|+|.-|..+|++|.+.|++|+ ++|.+
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~-~~d~~ 40 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPAQA-LTLFC 40 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCEEE-EEcCC
Confidence 568999999999999999999999999998 88874
No 127
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=94.06 E-value=0.087 Score=53.47 Aligned_cols=36 Identities=17% Similarity=0.361 Sum_probs=32.3
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
|+..+|.|.|+|-+|+.+|+.|...|..=+.+.|.|
T Consensus 40 L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D 75 (392)
T PRK07878 40 LKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFD 75 (392)
T ss_pred HhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 577899999999999999999999998666688877
No 128
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=94.03 E-value=0.087 Score=53.19 Aligned_cols=77 Identities=16% Similarity=0.261 Sum_probs=55.0
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC------------------------------------------CC
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT------------------------------------------GG 241 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~------------------------------------------~~ 241 (359)
|+.++|.|.|+|.+|+.+++.|...|..=+.+.|.+ ..
T Consensus 39 l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~ 118 (370)
T PRK05600 39 LHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALRE 118 (370)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEeee
Confidence 678899999999999999999999997555588877 23
Q ss_pred cccccccccc--cceEEEecCCCCCCHH-HHHHHHhCCCeEe
Q 018214 242 VLNKENAADV--KAKFIIEAANHPTDPE-ADEILSKKGVVIL 280 (359)
Q Consensus 242 ~I~~~na~~i--~akiVvegAN~p~t~e-a~~~L~~rGI~vi 280 (359)
.|+++|+..+ ++.+|+.+.-+..+.- ..++..+.||.++
T Consensus 119 ~i~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~~~~~iP~v 160 (370)
T PRK05600 119 RLTAENAVELLNGVDLVLDGSDSFATKFLVADAAEITGTPLV 160 (370)
T ss_pred ecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEE
Confidence 3455555543 4778888776654432 2355667787544
No 129
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.98 E-value=0.23 Score=48.56 Aligned_cols=76 Identities=24% Similarity=0.231 Sum_probs=58.1
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCEEEEEe-ccchHHHHHHHHHHC----CCEEEeecCCCCCccccccccc--ccce
Q 018214 182 EAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEH----GGKVVAVSDITGGVLNKENAAD--VKAK 254 (359)
Q Consensus 182 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~v~VqG-~G~VG~~~a~~L~~~----GakvvavsD~~~~~I~~~na~~--i~ak 254 (359)
.+.|..|+... |++.+.+++||+|+|.| ..-||.-+|.+|.+. +|.|+ ++++.. .|... -+|.
T Consensus 133 ~PcTp~avi~l----L~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVt-vchs~T-----~~l~~~~~~AD 202 (287)
T PRK14181 133 IPCTPAGIIEL----LKYYEIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVT-LLHSQS-----ENLTEILKTAD 202 (287)
T ss_pred CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEE-EeCCCC-----CCHHHHHhhCC
Confidence 47888887654 55668999999999999 567899999999988 78887 877632 23333 2788
Q ss_pred EEEecCCCC--CCHH
Q 018214 255 FIIEAANHP--TDPE 267 (359)
Q Consensus 255 iVvegAN~p--~t~e 267 (359)
||+-++.-| ++++
T Consensus 203 IvV~AvG~p~~i~~~ 217 (287)
T PRK14181 203 IIIAAIGVPLFIKEE 217 (287)
T ss_pred EEEEccCCcCccCHH
Confidence 999888877 4544
No 130
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=93.98 E-value=0.19 Score=50.35 Aligned_cols=77 Identities=19% Similarity=0.192 Sum_probs=59.2
Q ss_pred CCchhHHHHHHHHHHHHHHhCCCCCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeecCCCCCccccccccc--ccceEEE
Q 018214 181 REAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDITGGVLNKENAAD--VKAKFII 257 (359)
Q Consensus 181 r~~aTg~Gv~~~~~~~~~~~g~~l~g~~v~VqG-~G~VG~~~a~~L~~~GakvvavsD~~~~~I~~~na~~--i~akiVv 257 (359)
-.+.|..|+...+ ++.+.+++||+|+|.| ..-||.-+|.+|.++||.|. ++.+. | .|... -+|.||+
T Consensus 193 ~~PCTp~avi~LL----~~~~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVT-icHs~----T-~nl~~~~~~ADIvI 262 (345)
T PLN02897 193 FVSCTPKGCVELL----IRSGVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVS-TVHAF----T-KDPEQITRKADIVI 262 (345)
T ss_pred CcCCCHHHHHHHH----HHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCEEE-EEcCC----C-CCHHHHHhhCCEEE
Confidence 3588988876554 5678999999999999 56789999999999999987 77663 2 22232 2788999
Q ss_pred ecCCCC--CCHH
Q 018214 258 EAANHP--TDPE 267 (359)
Q Consensus 258 egAN~p--~t~e 267 (359)
-++.-| ++++
T Consensus 263 sAvGkp~~v~~d 274 (345)
T PLN02897 263 AAAGIPNLVRGS 274 (345)
T ss_pred EccCCcCccCHH
Confidence 888887 5654
No 131
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.73 E-value=0.27 Score=48.40 Aligned_cols=76 Identities=24% Similarity=0.313 Sum_probs=57.5
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCEEEEEe-ccchHHHHHHHHHHC----CCEEEeecCCCCCccccccccc--ccce
Q 018214 182 EAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEH----GGKVVAVSDITGGVLNKENAAD--VKAK 254 (359)
Q Consensus 182 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~v~VqG-~G~VG~~~a~~L~~~----GakvvavsD~~~~~I~~~na~~--i~ak 254 (359)
.++|..|++. +|++++.+++||+|+|.| ...||.-+|.+|.++ +|.|. +|.+. | .|... -+|-
T Consensus 137 ~PcTp~avi~----lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVt-vchs~----T-~~l~~~~~~AD 206 (297)
T PRK14167 137 KPCTPHGIQK----LLAAAGVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVT-VCHSR----T-DDLAAKTRRAD 206 (297)
T ss_pred CCCCHHHHHH----HHHHhCCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEE-EeCCC----C-CCHHHHHhhCC
Confidence 4688888765 455678999999999999 577899999999988 89887 77763 2 23332 2788
Q ss_pred EEEecCCCC--CCHH
Q 018214 255 FIIEAANHP--TDPE 267 (359)
Q Consensus 255 iVvegAN~p--~t~e 267 (359)
||+-++.-| ++++
T Consensus 207 IvIsAvGkp~~i~~~ 221 (297)
T PRK14167 207 IVVAAAGVPELIDGS 221 (297)
T ss_pred EEEEccCCcCccCHH
Confidence 999888777 5654
No 132
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=93.72 E-value=0.12 Score=46.57 Aligned_cols=32 Identities=28% Similarity=0.388 Sum_probs=27.8
Q ss_pred EEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 208 KFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 208 ~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
+|.|.|.|.+|+.+++.|...|..=+.+.|.+
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 58999999999999999999998644488877
No 133
>PRK06436 glycerate dehydrogenase; Provisional
Probab=93.71 E-value=0.1 Score=51.32 Aligned_cols=35 Identities=26% Similarity=0.432 Sum_probs=31.5
Q ss_pred CCCCCCEEEEEeccchHHHHHHHHHHCCCEEEeec
Q 018214 202 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVS 236 (359)
Q Consensus 202 ~~l~g~~v~VqG~G~VG~~~a~~L~~~Gakvvavs 236 (359)
..|.|+||.|.|+|++|+.+|+.|...|.+|++..
T Consensus 118 ~~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~ 152 (303)
T PRK06436 118 KLLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYT 152 (303)
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEC
Confidence 35899999999999999999999999999999554
No 134
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.70 E-value=0.28 Score=47.99 Aligned_cols=76 Identities=14% Similarity=0.179 Sum_probs=57.9
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCEEEEEe-ccchHHHHHHHHHH--CCCEEEeecCCCCCccccccccc-c-cceEE
Q 018214 182 EAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHE--HGGKVVAVSDITGGVLNKENAAD-V-KAKFI 256 (359)
Q Consensus 182 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~v~VqG-~G~VG~~~a~~L~~--~GakvvavsD~~~~~I~~~na~~-i-~akiV 256 (359)
.++|..|+...+ ++.+.+++|++|+|.| ...||.-+|.+|.+ .+|.|. ++++. | .|... + +|.||
T Consensus 138 ~PcTp~av~~ll----~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVt-vchs~----T-~~l~~~~k~ADIv 207 (284)
T PRK14193 138 LPCTPRGIVHLL----RRYDVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVT-LCHTG----T-RDLAAHTRRADII 207 (284)
T ss_pred CCCCHHHHHHHH----HHhCCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEE-EeCCC----C-CCHHHHHHhCCEE
Confidence 578988876554 5678999999999999 67889999999988 799987 88773 2 23332 2 68888
Q ss_pred EecCCCC--CCHH
Q 018214 257 IEAANHP--TDPE 267 (359)
Q Consensus 257 vegAN~p--~t~e 267 (359)
+-++.-| ++++
T Consensus 208 V~AvGkp~~i~~~ 220 (284)
T PRK14193 208 VAAAGVAHLVTAD 220 (284)
T ss_pred EEecCCcCccCHH
Confidence 8888777 4544
No 135
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=93.64 E-value=2.2 Score=45.55 Aligned_cols=148 Identities=16% Similarity=0.222 Sum_probs=99.8
Q ss_pred CHHHHHHHHHHHHHHHHhhcCCCCCcCCCCCCCChhhHHHHHHHhhhhhCCCCccccCcccccCCCCCCCchhHHHHHHH
Q 018214 113 SMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGLGVFFA 192 (359)
Q Consensus 113 s~~e~e~l~r~~~~~l~~~iG~~~di~apDvgt~~~~m~~i~d~~~~~~g~~~~~~tGkp~~~GG~~~r~~aTg~Gv~~~ 192 (359)
+..|-..++..|+++++.-.||..-|-=+|++... ---+.+.|+. . -|.. .+--.-||-=+..+
T Consensus 244 ~g~eY~~~~defv~av~~~fGp~~~I~~EDf~~~~--af~iL~ryr~---~-------i~~F----nDDiQGTaaV~lAg 307 (581)
T PLN03129 244 TGEEYDELVDEFMEAVKQRWGPKVLVQFEDFANKN--AFRLLQRYRT---T-------HLCF----NDDIQGTAAVALAG 307 (581)
T ss_pred chhhHHHhHHHHHHHHHHHhCCccEEehhhcCCcc--HHHHHHHhcc---C-------CCEe----ccccchHHHHHHHH
Confidence 45667788999999999988876556667887653 2345667752 1 1111 12234577777888
Q ss_pred HHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHH-----CCC-------EEEeecCCCCCccccc--------------
Q 018214 193 TEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHE-----HGG-------KVVAVSDITGGVLNKE-------------- 246 (359)
Q Consensus 193 ~~~~~~~~g~~l~g~~v~VqG~G~VG~~~a~~L~~-----~Ga-------kvvavsD~~~~~I~~~-------------- 246 (359)
+..+++..|.+++..||++-|.|..|-.+|+.|.+ .|. ++. +.|++ +.|+.+
T Consensus 308 ll~A~r~~g~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~-~vD~~-GLi~~~r~~~l~~~k~~fa~ 385 (581)
T PLN03129 308 LLAALRATGGDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIW-LVDSK-GLVTKSRKDSLQPFKKPFAH 385 (581)
T ss_pred HHHHHHHhCCchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEE-EEcCC-CeEeCCCCccChHHHHHHHh
Confidence 88899988999999999999999999999998876 476 554 77886 222221
Q ss_pred ----------ccccccceEEEecCCC--CCCHHHHHHHH---hCCCe
Q 018214 247 ----------NAADVKAKFIIEAANH--PTDPEADEILS---KKGVV 278 (359)
Q Consensus 247 ----------na~~i~akiVvegAN~--p~t~ea~~~L~---~rGI~ 278 (359)
-++.+|+.++++.+=. -.|++.-+... +|=|+
T Consensus 386 ~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPII 432 (581)
T PLN03129 386 DHEPGASLLEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPII 432 (581)
T ss_pred hcccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEE
Confidence 1233466777776642 36777766664 55443
No 136
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=93.57 E-value=1 Score=47.53 Aligned_cols=36 Identities=33% Similarity=0.446 Sum_probs=32.2
Q ss_pred CCCCCCCEEEEEeccchHHHHHHHHHHCCCEEEeec
Q 018214 201 GKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVS 236 (359)
Q Consensus 201 g~~l~g~~v~VqG~G~VG~~~a~~L~~~Gakvvavs 236 (359)
|..+.|+|+.|.|+|++|+.+|+.|...|.+|++..
T Consensus 135 g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d 170 (526)
T PRK13581 135 GVELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYD 170 (526)
T ss_pred ccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEC
Confidence 345899999999999999999999999999999553
No 137
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=93.56 E-value=0.28 Score=48.83 Aligned_cols=69 Identities=23% Similarity=0.420 Sum_probs=48.4
Q ss_pred EEEEEeccchHHHHHHHHHHCC----CEEEeecCCC--------------------------------CCcc------cc
Q 018214 208 KFAIQGFGNVGSWAAKFFHEHG----GKVVAVSDIT--------------------------------GGVL------NK 245 (359)
Q Consensus 208 ~v~VqG~G~VG~~~a~~L~~~G----akvvavsD~~--------------------------------~~~I------~~ 245 (359)
+|+|-|||.+|+.+++.|.+.+ ..|++|.|.. +..| ++
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~~p 80 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSPTP 80 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcCCh
Confidence 5899999999999999998764 7999998744 1111 11
Q ss_pred cc--cccccceEEEecCCCCCCHHHHHHHHhCC
Q 018214 246 EN--AADVKAKFIIEAANHPTDPEADEILSKKG 276 (359)
Q Consensus 246 ~n--a~~i~akiVvegAN~p~t~ea~~~L~~rG 276 (359)
++ ....++.+|+|.+-..++.+......++|
T Consensus 81 ~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aG 113 (325)
T TIGR01532 81 EALPWRALGVDLVLDCTGVYGNREQGERHIRAG 113 (325)
T ss_pred hhccccccCCCEEEEccchhccHHHHHHHHHcC
Confidence 11 12257889999998888766555444556
No 138
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=93.55 E-value=1.1 Score=49.49 Aligned_cols=97 Identities=15% Similarity=0.225 Sum_probs=68.5
Q ss_pred cCCCCCCCChhhHHHHHHHhhhhhCC----------CCccc---------cCcccccCCCCCCCchhHHHHHHHHHHHHH
Q 018214 138 VPAPDMGTNSQTMAWILDEYSKFHGH----------SPAVV---------TGKPIDLGGSLGREAATGLGVFFATEALLA 198 (359)
Q Consensus 138 i~apDvgt~~~~m~~i~d~~~~~~g~----------~~~~~---------tGkp~~~GG~~~r~~aTg~Gv~~~~~~~~~ 198 (359)
|.+-|++|+.+|++.+.+....+... .|.++ ..-|+. ++--.-||-=+..++..+++
T Consensus 102 id~~~i~~~~~d~de~v~~v~~~~p~~g~i~~ED~~~p~~f~i~~~~~~~~~ip~f----~DD~~GTa~v~lA~l~na~~ 177 (752)
T PRK07232 102 IDVFDIEVDEEDPDKFIEAVAALEPTFGGINLEDIKAPECFYIEEKLRERMDIPVF----HDDQHGTAIISAAALLNALE 177 (752)
T ss_pred CCccccccCCCCHHHHHHHHHHhCCCccEEeeeecCCchHHHHHHHHHHhcCCCee----ccccchHHHHHHHHHHHHHH
Confidence 44567777777777666655433211 12221 012332 23335588778888889999
Q ss_pred HhCCCCCCCEEEEEeccchHHHHHHHHHHCCC---EEEeecCCC
Q 018214 199 EHGKSISNMKFAIQGFGNVGSWAAKFFHEHGG---KVVAVSDIT 239 (359)
Q Consensus 199 ~~g~~l~g~~v~VqG~G~VG~~~a~~L~~~Ga---kvvavsD~~ 239 (359)
..|.+++..|++|.|.|..|-.++++|...|. +++ ++|+.
T Consensus 178 ~~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~-~~D~~ 220 (752)
T PRK07232 178 LVGKKIEDVKIVVSGAGAAAIACLNLLVALGAKKENII-VCDSK 220 (752)
T ss_pred HhCCChhhcEEEEECccHHHHHHHHHHHHcCCCcccEE-EEcCC
Confidence 88999999999999999999999999999998 565 88885
No 139
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=93.52 E-value=0.049 Score=52.01 Aligned_cols=36 Identities=25% Similarity=0.551 Sum_probs=31.0
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
|+..+|+|.|.|-||+|+++.|.+.|..=+.+-|.|
T Consensus 28 l~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D 63 (263)
T COG1179 28 LKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMD 63 (263)
T ss_pred HhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecc
Confidence 678899999999999999999999997444477776
No 140
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=93.50 E-value=0.11 Score=51.67 Aligned_cols=37 Identities=35% Similarity=0.562 Sum_probs=32.6
Q ss_pred CCCCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 202 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 202 ~~l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
..++|++|.|.|+|++|+.+|+.|...|.+|++. |.+
T Consensus 142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~-d~~ 178 (330)
T PRK12480 142 KPVKNMTVAIIGTGRIGAATAKIYAGFGATITAY-DAY 178 (330)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEE-eCC
Confidence 3589999999999999999999999999999954 543
No 141
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=93.48 E-value=0.94 Score=45.04 Aligned_cols=85 Identities=22% Similarity=0.342 Sum_probs=57.1
Q ss_pred CCCCCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC------------------------------------CCccc
Q 018214 201 GKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT------------------------------------GGVLN 244 (359)
Q Consensus 201 g~~l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~------------------------------------~~~I~ 244 (359)
+.++.|||+-|.|+|.+|..+|+.+.-.|.+|+ ..|.+ -+.||
T Consensus 141 ~~~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~-y~~~~~~~~~~~~~~~~y~~l~ell~~sDii~l~~Plt~~T~hLin 219 (324)
T COG1052 141 GFDLRGKTLGIIGLGRIGQAVARRLKGFGMKVL-YYDRSPNPEAEKELGARYVDLDELLAESDIISLHCPLTPETRHLIN 219 (324)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHhcCCCEEE-EECCCCChHHHhhcCceeccHHHHHHhCCEEEEeCCCChHHhhhcC
Confidence 467999999999999999999999999999998 45543 23344
Q ss_pred cccccccc-ceEEEecCCCCC-CH-HHHHHHHhCCCe-Eecccccc
Q 018214 245 KENAADVK-AKFIIEAANHPT-DP-EADEILSKKGVV-ILPDIYAN 286 (359)
Q Consensus 245 ~~na~~i~-akiVvegAN~p~-t~-ea~~~L~~rGI~-viPD~laN 286 (359)
.+...+.| --+++--|-+++ .. ...+.|+++-|- ..=|+.-+
T Consensus 220 ~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i~gaglDV~e~ 265 (324)
T COG1052 220 AEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIAGAGLDVFEN 265 (324)
T ss_pred HHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCcceEEeeecCC
Confidence 44444443 246777777773 33 335667666654 33344333
No 142
>PRK07411 hypothetical protein; Validated
Probab=93.47 E-value=0.12 Score=52.39 Aligned_cols=36 Identities=17% Similarity=0.245 Sum_probs=32.8
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
|+..+|.|.|+|-+|+.+|++|...|..=+.+.|.|
T Consensus 36 L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D 71 (390)
T PRK07411 36 LKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFD 71 (390)
T ss_pred HhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 577899999999999999999999998766688988
No 143
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=93.46 E-value=0.12 Score=51.06 Aligned_cols=34 Identities=24% Similarity=0.251 Sum_probs=31.3
Q ss_pred CCCCCEEEEEeccchHHHHHHHHHHCCCEEEeec
Q 018214 203 SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVS 236 (359)
Q Consensus 203 ~l~g~~v~VqG~G~VG~~~a~~L~~~Gakvvavs 236 (359)
.++|+||.|.|+|++|+.+|+.|...|.+|+++.
T Consensus 133 ~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~ 166 (312)
T PRK15469 133 HREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWS 166 (312)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence 4789999999999999999999999999998654
No 144
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=93.41 E-value=0.3 Score=45.21 Aligned_cols=53 Identities=26% Similarity=0.290 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHH--HHCCCEEEeecCCC
Q 018214 186 GLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFF--HEHGGKVVAVSDIT 239 (359)
Q Consensus 186 g~Gv~~~~~~~~~~~g~~l~g~~v~VqG~G~VG~~~a~~L--~~~GakvvavsD~~ 239 (359)
||=|...++.+-+.++.. ...+++|.|+|++|..+++.+ .+.|.+++|+.|.+
T Consensus 65 gy~v~~l~~~~~~~l~~~-~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d 119 (213)
T PRK05472 65 GYNVEELLEFIEKILGLD-RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVD 119 (213)
T ss_pred CeeHHHHHHHHHHHhCCC-CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECC
Confidence 455555444444455655 567999999999999999864 36799999999876
No 145
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=93.31 E-value=0.068 Score=46.09 Aligned_cols=33 Identities=33% Similarity=0.452 Sum_probs=29.0
Q ss_pred CCEEEEEeccchHHHHHHHHHHCCCEEEeecCC
Q 018214 206 NMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI 238 (359)
Q Consensus 206 g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~ 238 (359)
..+|.|.|.|+||.++++.|.+.|..|++|...
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~sr 42 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSR 42 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTSEEEEESSC
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeC
Confidence 468999999999999999999999999988655
No 146
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=93.21 E-value=0.14 Score=51.52 Aligned_cols=36 Identities=22% Similarity=0.350 Sum_probs=32.1
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
++.++|+|.|+|-+|+.+++.|...|..=+.+.|.+
T Consensus 133 l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 133 LLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred HhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 789999999999999999999999998555577876
No 147
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.17 E-value=0.37 Score=47.30 Aligned_cols=76 Identities=25% Similarity=0.288 Sum_probs=57.5
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCEEEEEe-ccchHHHHHHHHHHC----CCEEEeecCCCCCccccccccc--ccce
Q 018214 182 EAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEH----GGKVVAVSDITGGVLNKENAAD--VKAK 254 (359)
Q Consensus 182 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~v~VqG-~G~VG~~~a~~L~~~----GakvvavsD~~~~~I~~~na~~--i~ak 254 (359)
.++|..|+.. ++++.+.+++||+|+|.| ..-||.-++.+|.++ +|.|+ +|.+.. .|... -+|.
T Consensus 137 ~PcTp~av~~----lL~~~~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVt-vchs~T-----~nl~~~~~~AD 206 (293)
T PRK14185 137 VSATPNGILE----LLKRYHIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVT-VCHSRS-----KNLKKECLEAD 206 (293)
T ss_pred CCCCHHHHHH----HHHHhCCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEE-EecCCC-----CCHHHHHhhCC
Confidence 5788888765 455678999999999999 567899999999988 68887 877642 23222 2688
Q ss_pred EEEecCCCC--CCHH
Q 018214 255 FIIEAANHP--TDPE 267 (359)
Q Consensus 255 iVvegAN~p--~t~e 267 (359)
||+-++.-| ++++
T Consensus 207 IvIsAvGkp~~i~~~ 221 (293)
T PRK14185 207 IIIAALGQPEFVKAD 221 (293)
T ss_pred EEEEccCCcCccCHH
Confidence 999888887 4543
No 148
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.12 E-value=0.34 Score=49.84 Aligned_cols=35 Identities=34% Similarity=0.378 Sum_probs=32.1
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
+.+++|.|.|+|..|..+|++|.+.|++|. ++|.+
T Consensus 12 ~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~-~~D~~ 46 (458)
T PRK01710 12 IKNKKVAVVGIGVSNIPLIKFLVKLGAKVT-AFDKK 46 (458)
T ss_pred hcCCeEEEEcccHHHHHHHHHHHHCCCEEE-EECCC
Confidence 568999999999999999999999999987 78865
No 149
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=93.06 E-value=1.2 Score=43.35 Aligned_cols=35 Identities=23% Similarity=0.345 Sum_probs=30.8
Q ss_pred CCCCCEEEEEec-cchHHHHHHHHHHCCCEEEeecC
Q 018214 203 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSD 237 (359)
Q Consensus 203 ~l~g~~v~VqG~-G~VG~~~a~~L~~~GakvvavsD 237 (359)
++++++|.|.|. |-+|+++++.|.+.|++|+++..
T Consensus 3 ~~~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r 38 (340)
T PLN02653 3 DPPRKVALITGITGQDGSYLTEFLLSKGYEVHGIIR 38 (340)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEec
Confidence 467899999995 99999999999999999996643
No 150
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.01 E-value=0.38 Score=47.32 Aligned_cols=76 Identities=25% Similarity=0.323 Sum_probs=57.1
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCEEEEEe-ccchHHHHHHHHHHC----CCEEEeecCCCCCccccccccc--ccce
Q 018214 182 EAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEH----GGKVVAVSDITGGVLNKENAAD--VKAK 254 (359)
Q Consensus 182 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~v~VqG-~G~VG~~~a~~L~~~----GakvvavsD~~~~~I~~~na~~--i~ak 254 (359)
.++|..|+... |++.|.+++|++|+|.| ...||.-+|.+|.++ +|.|. ++.+. | .|... -+|.
T Consensus 141 ~PcTp~avi~l----L~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVt-v~hs~----T-~~l~~~~~~AD 210 (297)
T PRK14168 141 LPCTPAGIQEM----LVRSGVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVT-IVHTR----S-KNLARHCQRAD 210 (297)
T ss_pred cCCCHHHHHHH----HHHhCCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEE-EecCC----C-cCHHHHHhhCC
Confidence 47888877654 45678999999999999 677899999999988 78887 77663 2 22222 2688
Q ss_pred EEEecCCCC--CCHH
Q 018214 255 FIIEAANHP--TDPE 267 (359)
Q Consensus 255 iVvegAN~p--~t~e 267 (359)
||+-++.-| ++++
T Consensus 211 IvVsAvGkp~~i~~~ 225 (297)
T PRK14168 211 ILIVAAGVPNLVKPE 225 (297)
T ss_pred EEEEecCCcCccCHH
Confidence 999888777 4554
No 151
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=92.99 E-value=0.3 Score=51.39 Aligned_cols=84 Identities=27% Similarity=0.336 Sum_probs=58.9
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC----------CCc-------------------ccccc-------
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT----------GGV-------------------LNKEN------- 247 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~----------~~~-------------------I~~~n------- 247 (359)
+.+.+|+|.|+|.+|..++..+...|++|+ +.|.+ |.. ++++.
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~-v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~ 240 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVR-AFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL 240 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence 457899999999999999999999999977 66766 111 11111
Q ss_pred -cccc-cceEEEecC-----CCC--CCHHHHHHHHhCCCeEeccccccccCc
Q 018214 248 -AADV-KAKFIIEAA-----NHP--TDPEADEILSKKGVVILPDIYANSGGV 290 (359)
Q Consensus 248 -a~~i-~akiVvegA-----N~p--~t~ea~~~L~~rGI~viPD~laNaGGV 290 (359)
.+++ ++.+|+..+ ..| +|.+.-+ +-++| -+|=|+.+..||-
T Consensus 241 ~~e~~~~~DIVI~TalipG~~aP~Lit~emv~-~MKpG-svIVDlA~d~GGn 290 (511)
T TIGR00561 241 FAAQAKEVDIIITTALIPGKPAPKLITEEMVD-SMKAG-SVIVDLAAEQGGN 290 (511)
T ss_pred HHHHhCCCCEEEECcccCCCCCCeeehHHHHh-hCCCC-CEEEEeeeCCCCC
Confidence 1112 588999888 566 5666644 44556 4577888888883
No 152
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.89 E-value=0.36 Score=49.98 Aligned_cols=35 Identities=29% Similarity=0.300 Sum_probs=31.8
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
+.+++|.|.|+|..|..+|++|++.|++|+ ++|.+
T Consensus 13 ~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~-~~D~~ 47 (473)
T PRK00141 13 ELSGRVLVAGAGVSGRGIAAMLSELGCDVV-VADDN 47 (473)
T ss_pred ccCCeEEEEccCHHHHHHHHHHHHCCCEEE-EECCC
Confidence 678899999999999999999999999877 88864
No 153
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=92.78 E-value=0.41 Score=46.67 Aligned_cols=52 Identities=21% Similarity=0.241 Sum_probs=45.3
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCEEEEEec-cchHHHHHHHHHHCCCEEE
Q 018214 182 EAATGLGVFFATEALLAEHGKSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVV 233 (359)
Q Consensus 182 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~v~VqG~-G~VG~~~a~~L~~~Gakvv 233 (359)
..-|+|-.+--+...++++|++++..+|+|.|. |.+|+.+|+.|.-++.+..
T Consensus 143 ns~Tayaa~r~Vl~~~~~lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ 195 (351)
T COG5322 143 NSHTAYAACRQVLKHFAQLGIDLSQATVAIVGATGDIASAIARWLAPKVGVKE 195 (351)
T ss_pred CccchHHHHHHHHHHHHHhCcCHHHCeEEEecCCchHHHHHHHHhccccCEEE
Confidence 346889888888888889999999999999996 9999999999987776554
No 154
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=92.74 E-value=0.23 Score=50.58 Aligned_cols=32 Identities=38% Similarity=0.616 Sum_probs=28.8
Q ss_pred CEEEEEeccchHHHHHHHHHHCC-CEEEeecCCC
Q 018214 207 MKFAIQGFGNVGSWAAKFFHEHG-GKVVAVSDIT 239 (359)
Q Consensus 207 ~~v~VqG~G~VG~~~a~~L~~~G-akvvavsD~~ 239 (359)
++|+|.|+|.||+.+|..|++.| ..|. ++|.+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~-iAdRs 34 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVT-IADRS 34 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEE-EEeCC
Confidence 57999999999999999999999 7887 77775
No 155
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=92.69 E-value=0.3 Score=47.00 Aligned_cols=51 Identities=20% Similarity=0.306 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHCC-CEEEeecCCC
Q 018214 185 TGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHG-GKVVAVSDIT 239 (359)
Q Consensus 185 Tg~Gv~~~~~~~~~~~g~~l~g~~v~VqG~G~VG~~~a~~L~~~G-akvvavsD~~ 239 (359)
.+.|...+++. ..+.++++++|.|.|.|.+|+.+++.|.+.| .+|+ |.+.+
T Consensus 105 D~~G~~~~l~~---~~~~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~-v~~R~ 156 (278)
T PRK00258 105 DGIGFVRALEE---RLGVDLKGKRILILGAGGAARAVILPLLDLGVAEIT-IVNRT 156 (278)
T ss_pred cHHHHHHHHHh---ccCCCCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEE-EEeCC
Confidence 45665555542 2466789999999999999999999999999 5666 77765
No 156
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=92.69 E-value=0.24 Score=43.95 Aligned_cols=70 Identities=21% Similarity=0.377 Sum_probs=52.7
Q ss_pred EEEEEeccchHHHHHHHHH-HCCCEEEeecCCC---------------------------------CCccc---cccc--
Q 018214 208 KFAIQGFGNVGSWAAKFFH-EHGGKVVAVSDIT---------------------------------GGVLN---KENA-- 248 (359)
Q Consensus 208 ~v~VqG~G~VG~~~a~~L~-~~GakvvavsD~~---------------------------------~~~I~---~~na-- 248 (359)
||.|-|||.+|+.+++.+. +....||+|.|.. |..|. +.+.
T Consensus 2 kVgINGfGRIGR~v~r~~~~~~~~evvaInd~~~~~~~~a~LlkyDs~~G~~~~~v~~~~~~l~v~G~~I~~~~~~dp~~ 81 (151)
T PF00044_consen 2 KVGINGFGRIGRLVLRAALDQPDIEVVAINDPAPDPEYLAYLLKYDSVHGRFPGDVEVDDDGLIVNGKKIKVTEERDPEE 81 (151)
T ss_dssp EEEEESTSHHHHHHHHHHHTSTTEEEEEEEESSSSHHHHHHHHHEETTTESGSSHEEEETTEEEETTEEEEEEHTSSGGG
T ss_pred EEEEECCCcccHHHHHhhcccceEEEEEEecccccchhhhhhhhccccccceecccccccceeEeecccccchhhhhhcc
Confidence 7999999999999999987 5678999999977 11111 1111
Q ss_pred ---ccccceEEEecCCCCCCHHHHHHHHhCCC
Q 018214 249 ---ADVKAKFIIEAANHPTDPEADEILSKKGV 277 (359)
Q Consensus 249 ---~~i~akiVvegAN~p~t~ea~~~L~~rGI 277 (359)
....+.+|+|..-...|.+..+...++|+
T Consensus 82 i~W~~~gvDiVvEcTG~f~~~~~~~~hl~~Ga 113 (151)
T PF00044_consen 82 IPWGELGVDIVVECTGKFRTRENAEAHLDAGA 113 (151)
T ss_dssp STHHHHTESEEEETSSSTHSHHHHTHHHHTTE
T ss_pred cccccccccEEEeccccceecccccccccccc
Confidence 12467799999988888887777777776
No 157
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=92.69 E-value=1.4 Score=41.91 Aligned_cols=80 Identities=20% Similarity=0.186 Sum_probs=55.4
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCCE-EEeecCCC------------CCccccccc-cc-------ccceEEEecCCC
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGK-VVAVSDIT------------GGVLNKENA-AD-------VKAKFIIEAANH 262 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~Gak-vvavsD~~------------~~~I~~~na-~~-------i~akiVvegAN~ 262 (359)
..|.+|.|.|.|.+|..+++.+..+|++ |+++ |.+ ..+|+.++. +. -.+.+|+|..-.
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~-~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G~ 197 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAA-DPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSGA 197 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEE-CCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECCCC
Confidence 3789999999999999999999999997 7644 543 123433221 11 136788887754
Q ss_pred C-CCHHHHHHHHhCCCeEecccc
Q 018214 263 P-TDPEADEILSKKGVVILPDIY 284 (359)
Q Consensus 263 p-~t~ea~~~L~~rGI~viPD~l 284 (359)
+ ..+++-+.|+..|.++.-...
T Consensus 198 ~~~~~~~~~~l~~~G~iv~~G~~ 220 (280)
T TIGR03366 198 TAAVRACLESLDVGGTAVLAGSV 220 (280)
T ss_pred hHHHHHHHHHhcCCCEEEEeccC
Confidence 4 456777888888877765543
No 158
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=92.67 E-value=0.29 Score=47.59 Aligned_cols=135 Identities=17% Similarity=0.255 Sum_probs=80.8
Q ss_pred EEEEEeccchHHHHHHHHHHCCCEEEeecCCC---------CCcc---c-----------------------ccccc---
Q 018214 208 KFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT---------GGVL---N-----------------------KENAA--- 249 (359)
Q Consensus 208 ~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~---------~~~I---~-----------------------~~na~--- 249 (359)
+|.|.|+|++|..+|+.|.+.|.+|+ +.|.+ .+.. + ++.++
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~-~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~~~~~v~~~l~ 80 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCV-GYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHGIVDAVLEELA 80 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEE-EEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCchHHHHHHHHHH
Confidence 68999999999999999999999987 56776 0100 0 00011
Q ss_pred -cc-cceEEEecCCCC--CCHHHHHHHHhCCCeEeccccc------------cccCcchhhHhhhhc----cc----ccc
Q 018214 250 -DV-KAKFIIEAANHP--TDPEADEILSKKGVVILPDIYA------------NSGGVTVSYFEWVQN----IQ----GFM 305 (359)
Q Consensus 250 -~i-~akiVvegAN~p--~t~ea~~~L~~rGI~viPD~la------------NaGGVi~s~~E~~~n----~~----~~~ 305 (359)
.+ +-++|++..|.. .|.+..+.+.++|+.++---+. ..||= -..++-++. .. +..
T Consensus 81 ~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G~~~~~gG~-~~~~~~~~~~l~~~~~~~~~~~ 159 (298)
T TIGR00872 81 PTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERGYCFMIGGD-GEAFARAEPLFADVAPEEQGYL 159 (298)
T ss_pred hhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCeeeeCCC-HHHHHHHHHHHHHhcCcCCCEE
Confidence 12 236899998884 5677778899999987653322 22221 111221111 10 010
Q ss_pred c-C-------HHHHHHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHH
Q 018214 306 W-E-------EEKVNHELKRYMMSAFKDIKTMCQTH--NCNLRMGAFTL 344 (359)
Q Consensus 306 w-~-------~e~v~~~l~~~m~~~~~~v~~~a~~~--~~~~r~aA~~~ 344 (359)
+ - -+.++..+.-.+..++.+.++.+++. ++++.+.+.++
T Consensus 160 ~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~ 208 (298)
T TIGR00872 160 YCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVW 208 (298)
T ss_pred EECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHH
Confidence 1 0 12233445555557788888888876 56887777653
No 159
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=92.67 E-value=0.34 Score=44.94 Aligned_cols=57 Identities=23% Similarity=0.195 Sum_probs=44.9
Q ss_pred CchhHHHHHHHHHHHH-----HHhCCCCCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 182 EAATGLGVFFATEALL-----AEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 182 ~~aTg~Gv~~~~~~~~-----~~~g~~l~g~~v~VqG-~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
.+.|..|++..++..= ...+.+++||+|+|.| ...||.-+|.+|.+.||.|. ++|++
T Consensus 33 ~PCTp~avi~lL~~~~i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVt-i~~~~ 95 (197)
T cd01079 33 LPCTPLAIVKILEFLGIYNKILPYGNRLYGKTITIINRSEVVGRPLAALLANDGARVY-SVDIN 95 (197)
T ss_pred cCCCHHHHHHHHHHhCCcccccccCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE-EEecC
Confidence 4789999887665430 0124589999999999 56789999999999999998 88865
No 160
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=92.65 E-value=0.47 Score=44.83 Aligned_cols=77 Identities=18% Similarity=0.125 Sum_probs=53.1
Q ss_pred CCCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCCC---------Ccccc--ccc---ccccceEEEecCCCC-CCHH
Q 018214 203 SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITG---------GVLNK--ENA---ADVKAKFIIEAANHP-TDPE 267 (359)
Q Consensus 203 ~l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~~---------~~I~~--~na---~~i~akiVvegAN~p-~t~e 267 (359)
.+++++|.|.|-|+|+..=++.|.+.||+|+=||..-. +.|+- .+. +--.+.+|+-+.|.+ +...
T Consensus 22 ~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~dl~g~~LViaATdD~~vN~~ 101 (223)
T PRK05562 22 LSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIVIATDDEKLNNK 101 (223)
T ss_pred ECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCcEEEECCCCHHHHHH
Confidence 46799999999999999999999999999975653221 11110 000 012577888888887 5666
Q ss_pred HHHHHHhCCCeE
Q 018214 268 ADEILSKKGVVI 279 (359)
Q Consensus 268 a~~~L~~rGI~v 279 (359)
..+..+++++++
T Consensus 102 I~~~a~~~~~lv 113 (223)
T PRK05562 102 IRKHCDRLYKLY 113 (223)
T ss_pred HHHHHHHcCCeE
Confidence 666667778754
No 161
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=92.63 E-value=0.43 Score=49.08 Aligned_cols=35 Identities=26% Similarity=0.302 Sum_probs=31.6
Q ss_pred CCCCEEEEEeccchHHH-HHHHHHHCCCEEEeecCCC
Q 018214 204 ISNMKFAIQGFGNVGSW-AAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~-~a~~L~~~GakvvavsD~~ 239 (359)
.++++|.|.|.|..|.+ +|++|.++|++|. ++|.+
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~-~~D~~ 40 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVS-GSDLK 40 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCCeEE-EECCC
Confidence 46789999999999999 6999999999998 88875
No 162
>PRK12861 malic enzyme; Reviewed
Probab=92.51 E-value=0.77 Score=50.60 Aligned_cols=103 Identities=18% Similarity=0.169 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHhhcCCCCCcCCCCCCCChhhHHHHHHHhhhhhCCCCccccCcccccCCCCCCCchhHHHHHHHHHHHH
Q 018214 118 ERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGLGVFFATEALL 197 (359)
Q Consensus 118 e~l~r~~~~~l~~~iG~~~di~apDvgt~~~~m~~i~d~~~~~~g~~~~~~tGkp~~~GG~~~r~~aTg~Gv~~~~~~~~ 197 (359)
+.|. .|++.+.+-.|. |-=+|+... .--.+.++|+... .-|+. ++--.-||-=+..++..++
T Consensus 119 d~~v-~~v~a~~~~fg~---i~lED~~~p--~~f~il~~~~~~~--------~ipvf----~DD~qGTa~v~lA~llnal 180 (764)
T PRK12861 119 DKLV-DIIAGLEPTFGG---INLEDIKAP--ECFTVERKLRERM--------KIPVF----HDDQHGTAITVSAAFINGL 180 (764)
T ss_pred HHHH-HHHHHHHhhcCC---ceeeeccCc--hHHHHHHHHHhcC--------CCCee----ccccchHHHHHHHHHHHHH
Confidence 4566 778888776644 444676543 2334556665311 12222 1223447777778888889
Q ss_pred HHhCCCCCCCEEEEEeccchHHHHHHHHHHCCC---EEEeecCCC
Q 018214 198 AEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGG---KVVAVSDIT 239 (359)
Q Consensus 198 ~~~g~~l~g~~v~VqG~G~VG~~~a~~L~~~Ga---kvvavsD~~ 239 (359)
+..|.+++..||++.|.|..|..+++.|.+.|. +++ ++|++
T Consensus 181 ~~~gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~~~i~-~~D~~ 224 (764)
T PRK12861 181 KVVGKSIKEVKVVTSGAGAAALACLDLLVDLGLPVENIW-VTDIE 224 (764)
T ss_pred HHhCCChhHcEEEEECHhHHHHHHHHHHHHcCCChhhEE-EEcCC
Confidence 988999999999999999999999999999998 566 88985
No 163
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=92.50 E-value=0.16 Score=50.67 Aligned_cols=32 Identities=25% Similarity=0.419 Sum_probs=30.1
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCCEEEee
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAV 235 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~Gakvvav 235 (359)
|+|+||.|.|+|++|...|+.|...|.+|+..
T Consensus 14 LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~ 45 (335)
T PRK13403 14 LQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVG 45 (335)
T ss_pred hCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEE
Confidence 89999999999999999999999999999843
No 164
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=92.48 E-value=0.34 Score=46.21 Aligned_cols=74 Identities=22% Similarity=0.280 Sum_probs=52.0
Q ss_pred CEEEEEec-cchHHHHHHHHHH-CCCEEEeecCCCCC---------cccccccccc--cceEEEecCCCCCCHHHHHHHH
Q 018214 207 MKFAIQGF-GNVGSWAAKFFHE-HGGKVVAVSDITGG---------VLNKENAADV--KAKFIIEAANHPTDPEADEILS 273 (359)
Q Consensus 207 ~~v~VqG~-G~VG~~~a~~L~~-~GakvvavsD~~~~---------~I~~~na~~i--~akiVvegAN~p~t~ea~~~L~ 273 (359)
.+|+|.|+ |.+|+..++.+.+ .+.++++++|.+.. +...++.+.+ .+.+|++.++.....+.-....
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~p~~~~~~~~~al 81 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTTPEATLENLEFAL 81 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCCHHHHHHHHHHHH
Confidence 47999998 9999999998876 57999999998632 1112233222 4678888885445566666677
Q ss_pred hCCCeEe
Q 018214 274 KKGVVIL 280 (359)
Q Consensus 274 ~rGI~vi 280 (359)
++|+.++
T Consensus 82 ~~G~~vv 88 (257)
T PRK00048 82 EHGKPLV 88 (257)
T ss_pred HcCCCEE
Confidence 7887666
No 165
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=92.48 E-value=0.53 Score=52.34 Aligned_cols=91 Identities=13% Similarity=0.141 Sum_probs=60.6
Q ss_pred HhCCCCCCCEEEEEeccchHHHHHHHHHHC---------CCEEEeecCCCCCccccc-----c-------------c---
Q 018214 199 EHGKSISNMKFAIQGFGNVGSWAAKFFHEH---------GGKVVAVSDITGGVLNKE-----N-------------A--- 248 (359)
Q Consensus 199 ~~g~~l~g~~v~VqG~G~VG~~~a~~L~~~---------GakvvavsD~~~~~I~~~-----n-------------a--- 248 (359)
.+-.+-+..+++|.|||+||+.+++.|.+. ..+|++|+|++...+++. + .
T Consensus 458 ~f~~~~~~~~i~l~G~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 537 (819)
T PRK09436 458 SFFLSDQVLDVFVIGVGGVGGALLEQIKRQQPWLKKKNIDLRVCGIANSRKMLLDEHGIDLDNWREELAEAGEPFDLDRL 537 (819)
T ss_pred HHhcccccccEEEEecCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcCCccccCCCCCCHHHHHHHHhhccCCCCHHHH
Confidence 333344678899999999999999988643 346889998774443321 1 0
Q ss_pred ------ccccceEEEecCCCCCCHHHHHHHHhCCCeEeccccccccCcch
Q 018214 249 ------ADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTV 292 (359)
Q Consensus 249 ------~~i~akiVvegAN~p~t~ea~~~L~~rGI~viPD~laNaGGVi~ 292 (359)
..+...+|+|..+............++|+.|+ .+|.+.+..
T Consensus 538 ~~~~~~~~~~~~vvvd~t~~~~~~~~~~~al~~g~~VV---taNK~~~a~ 584 (819)
T PRK09436 538 IRLVKEYHLLNPVIVDCTSSQAVADQYADFLAAGFHVV---TPNKKANTS 584 (819)
T ss_pred HHHHhhcCCCCCEEEECCCChHHHHHHHHHHHcCCEEE---cCCchhccC
Confidence 11235789998876533333345668999886 488887764
No 166
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=92.47 E-value=0.51 Score=47.17 Aligned_cols=71 Identities=18% Similarity=0.328 Sum_probs=49.6
Q ss_pred CEEEEEeccchHHHHHHHHHHC----CCEEEeecCCC--------------------------------CCcc------c
Q 018214 207 MKFAIQGFGNVGSWAAKFFHEH----GGKVVAVSDIT--------------------------------GGVL------N 244 (359)
Q Consensus 207 ~~v~VqG~G~VG~~~a~~L~~~----GakvvavsD~~--------------------------------~~~I------~ 244 (359)
.+|+|-|||.+|+.+.+.|.+. ..++++|-|.. |..| +
T Consensus 2 ~~IaInGfGrIGR~~lr~l~e~~~~~~l~vvaind~~~~~~~ayll~ydS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~~ 81 (336)
T PRK13535 2 IRVAINGFGRIGRNVLRALYESGRRAEITVVAINELADAEGMAHLLKYDTSHGRFAWDVRQERDQLFVGDDAIRLLHERD 81 (336)
T ss_pred eEEEEECcCHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEcCC
Confidence 3799999999999999999874 57888777533 1111 1
Q ss_pred cc--ccccccceEEEecCCCCCCHHHHHHHHhCCC
Q 018214 245 KE--NAADVKAKFIIEAANHPTDPEADEILSKKGV 277 (359)
Q Consensus 245 ~~--na~~i~akiVvegAN~p~t~ea~~~L~~rGI 277 (359)
++ ...+.++.+|+|.+...++.+-.....++|.
T Consensus 82 p~~~~w~~~gvDiVle~tG~~~s~~~a~~~l~aGA 116 (336)
T PRK13535 82 IASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGA 116 (336)
T ss_pred cccCcccccCCCEEEEccchhhhHHHHHHHHHcCC
Confidence 11 1223578899999998888766555555674
No 167
>PLN00203 glutamyl-tRNA reductase
Probab=92.43 E-value=2.4 Score=44.84 Aligned_cols=48 Identities=21% Similarity=0.282 Sum_probs=36.9
Q ss_pred HHHHHHHHhCC-CCCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 192 ATEALLAEHGK-SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 192 ~~~~~~~~~g~-~l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
+++.+.+.++. ++.+++|.|.|.|.+|..+++.|...|++-|.|.+.+
T Consensus 251 Av~la~~~~~~~~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs 299 (519)
T PLN00203 251 AVELALMKLPESSHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRS 299 (519)
T ss_pred HHHHHHHhcCCCCCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 33444445554 5899999999999999999999999997433377766
No 168
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=92.42 E-value=0.4 Score=45.56 Aligned_cols=35 Identities=26% Similarity=0.268 Sum_probs=30.3
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
.....|+|.|.|+-|..+|++|++.|.||. |-+.+
T Consensus 28 ~~esDViIVGaGPsGLtAAyyLAk~g~kV~-i~E~~ 62 (262)
T COG1635 28 YLESDVIIVGAGPSGLTAAYYLAKAGLKVA-IFERK 62 (262)
T ss_pred hhhccEEEECcCcchHHHHHHHHhCCceEE-EEEee
Confidence 345679999999999999999999999997 66654
No 169
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=92.35 E-value=0.4 Score=44.56 Aligned_cols=33 Identities=21% Similarity=0.234 Sum_probs=29.7
Q ss_pred CCCCCEEEEEe-ccchHHHHHHHHHHCCCEEEee
Q 018214 203 SISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAV 235 (359)
Q Consensus 203 ~l~g~~v~VqG-~G~VG~~~a~~L~~~Gakvvav 235 (359)
+++|+++.|.| .|.+|.++|+.|.+.|++|+.+
T Consensus 7 ~l~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~ 40 (253)
T PRK08993 7 SLEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGI 40 (253)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEe
Confidence 47899999999 5789999999999999999865
No 170
>PRK13529 malate dehydrogenase; Provisional
Probab=92.34 E-value=4.1 Score=43.48 Aligned_cols=149 Identities=17% Similarity=0.219 Sum_probs=100.5
Q ss_pred CCHHHHHHHHHHHHHHHHhhcCCCCCcCCCCCCCChhhHHHHHHHhhhhhCCCCccccCcccccCCCCCCCchhHHHHHH
Q 018214 112 LSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGLGVFF 191 (359)
Q Consensus 112 ~s~~e~e~l~r~~~~~l~~~iG~~~di~apDvgt~~~~m~~i~d~~~~~~g~~~~~~tGkp~~~GG~~~r~~aTg~Gv~~ 191 (359)
.+..|-..|...|++++.... |..-|-=+|++... --.+.+.|+.- -|.. .+--.-||-=+..
T Consensus 218 ~~g~eY~~f~defv~av~~~~-P~~~I~~EDf~~~~--af~iL~ryr~~----------i~~F----nDDiQGTaaV~LA 280 (563)
T PRK13529 218 IRGEEYDEFVDEFVQAVKRRF-PNALLQFEDFAQKN--ARRILERYRDE----------ICTF----NDDIQGTGAVTLA 280 (563)
T ss_pred CchHHHHHHHHHHHHHHHHhC-CCeEEehhhcCCch--HHHHHHHhccC----------CCee----ccccchHHHHHHH
Confidence 345677888999999998876 44445557876542 33556777631 1111 1222447777788
Q ss_pred HHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHH----CCC-------EEEeecCCCCCcccc---------------
Q 018214 192 ATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHE----HGG-------KVVAVSDITGGVLNK--------------- 245 (359)
Q Consensus 192 ~~~~~~~~~g~~l~g~~v~VqG~G~VG~~~a~~L~~----~Ga-------kvvavsD~~~~~I~~--------------- 245 (359)
++..+++..|.+++..|+++-|.|..|-.+|+.|.+ .|. ++. +.|++ +.|++
T Consensus 281 gll~A~r~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~-~vD~~-GLl~~~r~~l~~~k~~fa~~ 358 (563)
T PRK13529 281 GLLAALKITGEPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFF-MVDRQ-GLLTDDMPDLLDFQKPYARK 358 (563)
T ss_pred HHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEE-EEcCC-CeEeCCCCcchHHHHHHhhh
Confidence 888999988999999999999999999999998876 688 555 77886 11111
Q ss_pred -----------------cccccccceEEEecCCC--CCCHHHHHHHHh---CCCeE
Q 018214 246 -----------------ENAADVKAKFIIEAANH--PTDPEADEILSK---KGVVI 279 (359)
Q Consensus 246 -----------------~na~~i~akiVvegAN~--p~t~ea~~~L~~---rGI~v 279 (359)
+-++.+|..++++.+=- -.|+|.-+...+ |=|++
T Consensus 359 ~~~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF 414 (563)
T PRK13529 359 REELADWDTEGDVISLLEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHCERPIIF 414 (563)
T ss_pred cccccccccccCCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEE
Confidence 22333455777776652 368888777766 65543
No 171
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=92.30 E-value=0.39 Score=44.44 Aligned_cols=106 Identities=23% Similarity=0.296 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHH--HHHCCCEEEeecCCCC----Cc---ccccccccc-----
Q 018214 186 GLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKF--FHEHGGKVVAVSDITG----GV---LNKENAADV----- 251 (359)
Q Consensus 186 g~Gv~~~~~~~~~~~g~~l~g~~v~VqG~G~VG~~~a~~--L~~~GakvvavsD~~~----~~---I~~~na~~i----- 251 (359)
||=|-+-.+++.+.+|.+ +--.|+|.|.||.|.+++.+ ..+.|.+++++.|+++ .. |+-.+.+.+
T Consensus 65 GYnV~~L~~ff~~~Lg~~-~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~v~ 143 (211)
T COG2344 65 GYNVKYLRDFFDDLLGQD-KTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGDVPVYDLDDLEKFVK 143 (211)
T ss_pred CccHHHHHHHHHHHhCCC-cceeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCCeeeechHHHHHHHH
Confidence 455555556666667765 44579999999999999865 3478999999999982 22 222233222
Q ss_pred --cce--EEEecCCCCCCHHHHHHHHhCCCe----EeccccccccCcchhh
Q 018214 252 --KAK--FIIEAANHPTDPEADEILSKKGVV----ILPDIYANSGGVTVSY 294 (359)
Q Consensus 252 --~ak--iVvegAN~p~t~ea~~~L~~rGI~----viPD~laNaGGVi~s~ 294 (359)
... +++=.| --.++..+.|-+.||- +.|--+.-.=+|++-+
T Consensus 144 ~~dv~iaiLtVPa--~~AQ~vad~Lv~aGVkGIlNFtPv~l~~pe~V~V~~ 192 (211)
T COG2344 144 KNDVEIAILTVPA--EHAQEVADRLVKAGVKGILNFTPVRLQVPEGVIVEN 192 (211)
T ss_pred hcCccEEEEEccH--HHHHHHHHHHHHcCCceEEeccceEecCCCCcEEEE
Confidence 222 222111 0235556788888875 4455555555676644
No 172
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=92.24 E-value=0.46 Score=45.80 Aligned_cols=77 Identities=19% Similarity=0.185 Sum_probs=49.4
Q ss_pred CCCCEEEEEeccchHHHHHHHHHH--CCCEEEeecCCCC----------C-cccccccccc--cceEEEecCCCCCCHHH
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHE--HGGKVVAVSDITG----------G-VLNKENAADV--KAKFIIEAANHPTDPEA 268 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~--~GakvvavsD~~~----------~-~I~~~na~~i--~akiVvegAN~p~t~ea 268 (359)
.+..||.|.|+|.+|...++.|.+ .+.++++|+|.+. + .-.-++.+.+ .+.+|++.+-...-.+.
T Consensus 4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~h~e~ 83 (271)
T PRK13302 4 RPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASVLRAI 83 (271)
T ss_pred CCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHHHHHH
Confidence 345799999999999999999986 4899999999871 1 0001112221 35678887754443444
Q ss_pred HHHHHhCCCeEe
Q 018214 269 DEILSKKGVVIL 280 (359)
Q Consensus 269 ~~~L~~rGI~vi 280 (359)
...+.++|..++
T Consensus 84 ~~~aL~aGk~Vi 95 (271)
T PRK13302 84 VEPVLAAGKKAI 95 (271)
T ss_pred HHHHHHcCCcEE
Confidence 334446666553
No 173
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=92.24 E-value=0.53 Score=46.61 Aligned_cols=78 Identities=19% Similarity=0.275 Sum_probs=52.3
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCCC------------Ccccccccccc-----cceEEEecCCCC-CC
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITG------------GVLNKENAADV-----KAKFIIEAANHP-TD 265 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~~------------~~I~~~na~~i-----~akiVvegAN~p-~t 265 (359)
-.|.+|+|.|.|.||..+++.+...|++|+++++.+. .+|+..+.+.+ .+.+|+|..-.+ ..
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g~~~~~ 261 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVSAVHAL 261 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCCCHHHH
Confidence 3689999999999999999999999999886544321 12322221111 356788776554 34
Q ss_pred HHHHHHHHhCCCeEec
Q 018214 266 PEADEILSKKGVVILP 281 (359)
Q Consensus 266 ~ea~~~L~~rGI~viP 281 (359)
.++-+.|+..|.++.-
T Consensus 262 ~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 262 GPLLGLLKVNGKLITL 277 (360)
T ss_pred HHHHHHhcCCcEEEEe
Confidence 5567778888876643
No 174
>PLN02306 hydroxypyruvate reductase
Probab=92.18 E-value=0.21 Score=50.78 Aligned_cols=34 Identities=15% Similarity=0.231 Sum_probs=30.6
Q ss_pred CCCCCCEEEEEeccchHHHHHHHHH-HCCCEEEee
Q 018214 202 KSISNMKFAIQGFGNVGSWAAKFFH-EHGGKVVAV 235 (359)
Q Consensus 202 ~~l~g~~v~VqG~G~VG~~~a~~L~-~~Gakvvav 235 (359)
.++.|+||.|.|+|++|+.+|+.|. ..|.+|++.
T Consensus 161 ~~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~ 195 (386)
T PLN02306 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY 195 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEE
Confidence 4589999999999999999999985 899999955
No 175
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=92.14 E-value=0.56 Score=48.65 Aligned_cols=38 Identities=32% Similarity=0.428 Sum_probs=33.4
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCCCCc
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGGV 242 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~~~~ 242 (359)
..+++|+|-|+|.-|..++++|++.|++|+ ++|.+...
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~-v~D~~~~~ 42 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVT-VSDDRPAP 42 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHCCCeEE-EEcCCCCc
Confidence 458999999999999999999999999998 88876433
No 176
>PRK12742 oxidoreductase; Provisional
Probab=92.13 E-value=1.7 Score=39.36 Aligned_cols=32 Identities=19% Similarity=0.279 Sum_probs=28.8
Q ss_pred CCCCEEEEEe-ccchHHHHHHHHHHCCCEEEee
Q 018214 204 ISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAV 235 (359)
Q Consensus 204 l~g~~v~VqG-~G~VG~~~a~~L~~~Gakvvav 235 (359)
++++++.|.| .|.+|+++++.|.+.|++|+.+
T Consensus 4 ~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~ 36 (237)
T PRK12742 4 FTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFT 36 (237)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEe
Confidence 6789999999 4999999999999999998744
No 177
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=92.04 E-value=0.36 Score=46.88 Aligned_cols=31 Identities=29% Similarity=0.437 Sum_probs=28.1
Q ss_pred EEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 208 KFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 208 ~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
+|.|.|.|++|..+|+.|.+.|.+|+ +.|.+
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~-v~d~~ 33 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGHQLQ-VFDVN 33 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCCeEE-EEcCC
Confidence 78999999999999999999999887 66766
No 178
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=91.95 E-value=0.41 Score=46.46 Aligned_cols=51 Identities=16% Similarity=0.070 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 185 TGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 185 Tg~Gv~~~~~~~~~~~g~~l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
-+.|+..+++. .+.++++++|.|.|.|.+|++++..|.+.|++=|.|.|.+
T Consensus 110 D~~G~~~~l~~----~~~~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~ 160 (284)
T PRK12549 110 DWSGFAESFRR----GLPDASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD 160 (284)
T ss_pred CHHHHHHHHHh----hccCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC
Confidence 46777776653 3346788999999999999999999999998544488876
No 179
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=91.89 E-value=0.19 Score=45.25 Aligned_cols=35 Identities=23% Similarity=0.349 Sum_probs=28.9
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
|++|+|+|.|||+-|..-|..|.+.|..|+ |....
T Consensus 2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~-Vglr~ 36 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVI-VGLRE 36 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHHHHCC-EEE-EEE-T
T ss_pred cCCCEEEEECCChHHHHHHHHHHhCCCCEE-EEecC
Confidence 579999999999999999999999999998 66553
No 180
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=91.85 E-value=0.23 Score=41.70 Aligned_cols=73 Identities=23% Similarity=0.343 Sum_probs=51.5
Q ss_pred EEEEEe-ccchHHHHHHHHHHC-CCEEEeecCCCC---Ccc---------------cccccccc-cceEEEecCCCCCCH
Q 018214 208 KFAIQG-FGNVGSWAAKFFHEH-GGKVVAVSDITG---GVL---------------NKENAADV-KAKFIIEAANHPTDP 266 (359)
Q Consensus 208 ~v~VqG-~G~VG~~~a~~L~~~-GakvvavsD~~~---~~I---------------~~~na~~i-~akiVvegAN~p~t~ 266 (359)
||.|.| .|.+|+.+++.|.++ ...++.+...+. ..+ .+.+...+ ++.+|+-+...-.+.
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~~~ 80 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGASK 80 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHHHH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhHHH
Confidence 689999 999999999999874 456666655441 111 11122223 678999998777888
Q ss_pred HHHHHHHhCCCeEe
Q 018214 267 EADEILSKKGVVIL 280 (359)
Q Consensus 267 ea~~~L~~rGI~vi 280 (359)
+....+.++|+.|+
T Consensus 81 ~~~~~~~~~g~~Vi 94 (121)
T PF01118_consen 81 ELAPKLLKAGIKVI 94 (121)
T ss_dssp HHHHHHHHTTSEEE
T ss_pred HHHHHHhhCCcEEE
Confidence 99999999999543
No 181
>PRK06813 homoserine dehydrogenase; Validated
Probab=91.83 E-value=0.54 Score=47.18 Aligned_cols=88 Identities=19% Similarity=0.346 Sum_probs=57.8
Q ss_pred CEEEEEeccchHHHHHHHHHHC--------C--CEEEeecCCCCCccccc-----------------------cc-----
Q 018214 207 MKFAIQGFGNVGSWAAKFFHEH--------G--GKVVAVSDITGGVLNKE-----------------------NA----- 248 (359)
Q Consensus 207 ~~v~VqG~G~VG~~~a~~L~~~--------G--akvvavsD~~~~~I~~~-----------------------na----- 248 (359)
.+|+|.|||+||+.+++.|.+. | .+|++|+|++...++++ +.
T Consensus 3 i~I~liG~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~~~~~~~~~gi~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 82 (346)
T PRK06813 3 IKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNVAIHNEDGLSIHHLLRYGGGSCAIEKYIEHHPEERAT 82 (346)
T ss_pred eEEEEEecChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEecchhhccccCCChhhhhhccccccchhhhhccChHHHhc
Confidence 4789999999999999988643 3 46889998763332211 10
Q ss_pred ccccceEEEecCCCC-C--CHHHH--HHHHhCCCeEeccccccccCcchhhHhh
Q 018214 249 ADVKAKFIIEAANHP-T--DPEAD--EILSKKGVVILPDIYANSGGVTVSYFEW 297 (359)
Q Consensus 249 ~~i~akiVvegAN~p-~--t~ea~--~~L~~rGI~viPD~laNaGGVi~s~~E~ 297 (359)
+.....+|||..+.. . +|... ....++|+.|| -+|.+.+...+-|.
T Consensus 83 ~~~~~dVvVe~T~s~~~~~e~a~~~~~~aL~~G~hVV---TANK~~la~~~~eL 133 (346)
T PRK06813 83 DNISGTVLVESTVTNLKDGNPGKQYIKQAIEKKMDIV---AISKGALVTNWREI 133 (346)
T ss_pred CCCCCCEEEECCCCccCCchHHHHHHHHHHHCCCeEE---cCCcHHHhccHHHH
Confidence 122578999986543 1 33222 34568999886 48888877666554
No 182
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=91.74 E-value=0.18 Score=50.35 Aligned_cols=35 Identities=23% Similarity=0.347 Sum_probs=32.0
Q ss_pred CCCCCCCEEEEEeccchHHHHHHHHHHCCCEEEee
Q 018214 201 GKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAV 235 (359)
Q Consensus 201 g~~l~g~~v~VqG~G~VG~~~a~~L~~~Gakvvav 235 (359)
|.++.|||+.|.|+|.+|+.+|+.+.-.|.++|+-
T Consensus 141 G~el~GKTLgvlG~GrIGseVA~r~k~~gm~vI~~ 175 (406)
T KOG0068|consen 141 GWELRGKTLGVLGLGRIGSEVAVRAKAMGMHVIGY 175 (406)
T ss_pred eeEEeccEEEEeecccchHHHHHHHHhcCceEEee
Confidence 55799999999999999999999999999999954
No 183
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=91.63 E-value=3.4 Score=39.70 Aligned_cols=31 Identities=26% Similarity=0.315 Sum_probs=27.5
Q ss_pred EEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 208 KFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 208 ~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
+|.|.|+|++|..+|+.|.+.|.+|+ +.|.+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~-~~dr~ 31 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLH-VTTIG 31 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEE-EEcCC
Confidence 47899999999999999999999988 66765
No 184
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=91.60 E-value=4.6 Score=41.51 Aligned_cols=38 Identities=21% Similarity=0.281 Sum_probs=33.2
Q ss_pred CCCCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 202 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 202 ~~l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
.++++++|.|.|.|.+|..+++.|.+.|++-+.|+..+
T Consensus 177 ~~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt 214 (414)
T PRK13940 177 DNISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRT 214 (414)
T ss_pred cCccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCC
Confidence 35889999999999999999999999998655588776
No 185
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=91.52 E-value=0.5 Score=45.31 Aligned_cols=70 Identities=19% Similarity=0.228 Sum_probs=44.8
Q ss_pred CEEEEEeccchHHHHHHHHHHC--CCEEEeecCCCCC----------cccccccccc--cceEEEecCCCCCCHH-HHHH
Q 018214 207 MKFAIQGFGNVGSWAAKFFHEH--GGKVVAVSDITGG----------VLNKENAADV--KAKFIIEAANHPTDPE-ADEI 271 (359)
Q Consensus 207 ~~v~VqG~G~VG~~~a~~L~~~--GakvvavsD~~~~----------~I~~~na~~i--~akiVvegAN~p~t~e-a~~~ 271 (359)
.+|.|.|+|++|...++.|.+. +.++++|+|.+.. .-.-++.+.+ ++.+|++.+....-.+ +.+.
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~~~~~~~~~~a 81 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASVNAVEEVVPKS 81 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCChHHHHHHHHHH
Confidence 4799999999999999998875 5889999998711 1011122222 5678888875443333 3333
Q ss_pred HHhCCC
Q 018214 272 LSKKGV 277 (359)
Q Consensus 272 L~~rGI 277 (359)
| ++|.
T Consensus 82 l-~~Gk 86 (265)
T PRK13304 82 L-ENGK 86 (265)
T ss_pred H-HcCC
Confidence 4 4564
No 186
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=91.50 E-value=0.43 Score=44.44 Aligned_cols=33 Identities=21% Similarity=0.242 Sum_probs=29.5
Q ss_pred CCCCCEEEEEe-ccchHHHHHHHHHHCCCEEEee
Q 018214 203 SISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAV 235 (359)
Q Consensus 203 ~l~g~~v~VqG-~G~VG~~~a~~L~~~Gakvvav 235 (359)
++++|++.|.| .+.+|.++|+.|.+.|++|+.+
T Consensus 5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~ 38 (251)
T PRK12481 5 DLNGKVAIITGCNTGLGQGMAIGLAKAGADIVGV 38 (251)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEe
Confidence 47899999999 5899999999999999999854
No 187
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=91.50 E-value=0.6 Score=46.38 Aligned_cols=36 Identities=28% Similarity=0.581 Sum_probs=31.1
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
+++.-|+|.|+|-||+|++-.|.+.|..=+-+-|-+
T Consensus 72 l~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfd 107 (430)
T KOG2018|consen 72 LTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFD 107 (430)
T ss_pred hcCcEEEEEecCchhHHHHHHHHHhcCceEEEechh
Confidence 789999999999999999999999998444466766
No 188
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.47 E-value=0.71 Score=48.01 Aligned_cols=35 Identities=23% Similarity=0.447 Sum_probs=32.0
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
+++++|.|.|+|..|..+|++|.+.|++|. ++|..
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~-~~D~~ 39 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARHGARLR-VADTR 39 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCEEE-EEcCC
Confidence 568899999999999999999999999988 78875
No 189
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=91.45 E-value=0.49 Score=43.40 Aligned_cols=34 Identities=21% Similarity=0.238 Sum_probs=30.3
Q ss_pred CCCCCEEEEEec-cchHHHHHHHHHHCCCEEEeec
Q 018214 203 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVS 236 (359)
Q Consensus 203 ~l~g~~v~VqG~-G~VG~~~a~~L~~~Gakvvavs 236 (359)
+++++++.|.|. |.+|.++|+.|.++|++|+.++
T Consensus 2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~ 36 (248)
T TIGR01832 2 SLEGKVALVTGANTGLGQGIAVGLAEAGADIVGAG 36 (248)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEc
Confidence 478999999996 8999999999999999998554
No 190
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=91.41 E-value=0.25 Score=49.30 Aligned_cols=30 Identities=37% Similarity=0.484 Sum_probs=28.9
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCCEEE
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVV 233 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~Gakvv 233 (359)
+++++|.|.|+|++|.+.|+.|.+.|.+|+
T Consensus 15 L~gktIgIIG~GsmG~AlA~~L~~sG~~Vv 44 (330)
T PRK05479 15 IKGKKVAIIGYGSQGHAHALNLRDSGVDVV 44 (330)
T ss_pred hCCCEEEEEeeHHHHHHHHHHHHHCCCEEE
Confidence 789999999999999999999999999987
No 191
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.37 E-value=0.84 Score=46.37 Aligned_cols=77 Identities=19% Similarity=0.330 Sum_probs=47.9
Q ss_pred CCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCCCCcccc---------cccccc--cceEEEecC-CCCCCHHHHHHH
Q 018214 205 SNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGGVLNK---------ENAADV--KAKFIIEAA-NHPTDPEADEIL 272 (359)
Q Consensus 205 ~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~~~~I~~---------~na~~i--~akiVvegA-N~p~t~ea~~~L 272 (359)
+.++|.|.|+|..|..+|+.|++.|++|+ ++|.+...... ++...+ +|.+|+=.. -.+..|...+ .
T Consensus 2 ~~~~i~iiGlG~~G~slA~~l~~~G~~V~-g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~~~~~~l~~-A 79 (418)
T PRK00683 2 GLQRVVVLGLGVTGKSIARFLAQKGVYVI-GVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIKKEHPWVQA-A 79 (418)
T ss_pred CCCeEEEEEECHHHHHHHHHHHHCCCEEE-EEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCCCCcHHHHH-H
Confidence 34789999999999999999999999987 67765332110 111111 233333222 2234444444 4
Q ss_pred HhCCCeEeccc
Q 018214 273 SKKGVVILPDI 283 (359)
Q Consensus 273 ~~rGI~viPD~ 283 (359)
.++|+.+++|.
T Consensus 80 ~~~g~~vv~~~ 90 (418)
T PRK00683 80 IASHIPVVTDI 90 (418)
T ss_pred HHCCCcEEEHH
Confidence 57898877774
No 192
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=91.36 E-value=0.57 Score=45.72 Aligned_cols=73 Identities=25% Similarity=0.316 Sum_probs=54.2
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccc-hHHHHHHHHHHCCCEEEeecCCCCCcccccccccc-cceEEEec
Q 018214 182 EAATGLGVFFATEALLAEHGKSISNMKFAIQGFGN-VGSWAAKFFHEHGGKVVAVSDITGGVLNKENAADV-KAKFIIEA 259 (359)
Q Consensus 182 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~v~VqG~G~-VG~~~a~~L~~~GakvvavsD~~~~~I~~~na~~i-~akiVveg 259 (359)
.+.|-+|++. ++++.+.++.|++++|.|-++ ||.-++.+|...+++|. ||++. |.+-+..+ +|.||+-+
T Consensus 136 ~PCTp~gi~~----ll~~~~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVt-vcHs~----T~~l~~~~k~ADIvv~A 206 (283)
T COG0190 136 LPCTPAGIMT----LLEEYGIDLRGKNVVVVGRSNIVGKPLALLLLNANATVT-VCHSR----TKDLASITKNADIVVVA 206 (283)
T ss_pred CCCCHHHHHH----HHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEE-EEcCC----CCCHHHHhhhCCEEEEe
Confidence 4788888765 456678999999999999655 79999999999999998 88774 22222222 56677766
Q ss_pred CCCC
Q 018214 260 ANHP 263 (359)
Q Consensus 260 AN~p 263 (359)
..-|
T Consensus 207 vG~p 210 (283)
T COG0190 207 VGKP 210 (283)
T ss_pred cCCc
Confidence 6666
No 193
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.27 E-value=1.5 Score=39.80 Aligned_cols=35 Identities=23% Similarity=0.279 Sum_probs=30.1
Q ss_pred CCCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeecCC
Q 018214 203 SISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDI 238 (359)
Q Consensus 203 ~l~g~~v~VqG-~G~VG~~~a~~L~~~GakvvavsD~ 238 (359)
+++++++.|.| .|.+|.++++.|.+.|++|+ +.+.
T Consensus 2 ~l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~-~~~r 37 (235)
T PRK06550 2 EFMTKTVLITGAASGIGLAQARAFLAQGAQVY-GVDK 37 (235)
T ss_pred CCCCCEEEEcCCCchHHHHHHHHHHHCCCEEE-EEeC
Confidence 46889999999 58999999999999999998 4444
No 194
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=91.26 E-value=0.99 Score=45.19 Aligned_cols=71 Identities=25% Similarity=0.409 Sum_probs=52.1
Q ss_pred CEEEEEeccchHHHHHHHHHH-CCCEEEeecCCC-------------------CC-cccc-c------------------
Q 018214 207 MKFAIQGFGNVGSWAAKFFHE-HGGKVVAVSDIT-------------------GG-VLNK-E------------------ 246 (359)
Q Consensus 207 ~~v~VqG~G~VG~~~a~~L~~-~GakvvavsD~~-------------------~~-~I~~-~------------------ 246 (359)
.||+|.|||.+|+..++.+.+ .+.++++|.|.+ .+ .+.. +
T Consensus 6 lrVaI~G~GrIGr~~~r~~~~~~~velvaI~D~~~~~~~~a~ll~yDs~~g~~~~~~v~~~~g~~l~~~g~~i~v~~~~~ 85 (338)
T PLN02358 6 IRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGIRN 85 (338)
T ss_pred eEEEEEeecHHHHHHHHHHhhCCCcEEEEEeCCCCCHHHHHHhheeecCCCCcCCCeEEECCCCEEEECCEEEEEEEcCC
Confidence 589999999999999998875 479999999965 11 2211 0
Q ss_pred --c--cccccceEEEecCCCCCCHHHHHHHHhCCC
Q 018214 247 --N--AADVKAKFIIEAANHPTDPEADEILSKKGV 277 (359)
Q Consensus 247 --n--a~~i~akiVvegAN~p~t~ea~~~L~~rGI 277 (359)
+ ....++.+|+|.+-..+|.+......++|.
T Consensus 86 p~~~~w~~~gvDiVie~tG~~~s~~~a~~hl~aGa 120 (338)
T PLN02358 86 PEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGA 120 (338)
T ss_pred cccCcccccCCCEEEEcccchhhHHHHHHHHHCCC
Confidence 1 111367799999988888777666667886
No 195
>PRK10637 cysG siroheme synthase; Provisional
Probab=91.23 E-value=0.72 Score=47.76 Aligned_cols=79 Identities=13% Similarity=0.186 Sum_probs=55.3
Q ss_pred CCCCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC---------CCcccc--ccc--ccc-cceEEEecCCCC-CCH
Q 018214 202 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT---------GGVLNK--ENA--ADV-KAKFIIEAANHP-TDP 266 (359)
Q Consensus 202 ~~l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~---------~~~I~~--~na--~~i-~akiVvegAN~p-~t~ 266 (359)
++++|++|.|.|-|+|+..=++.|.+.|++|+-||-.- .+.|+- .+. ..+ .+.+|+-+.|.+ +..
T Consensus 8 ~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~~~n~ 87 (457)
T PRK10637 8 CQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDDAVNQ 87 (457)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEEEEECCCCHHHhH
Confidence 46899999999999999999999999999997565321 111110 000 011 577888888887 667
Q ss_pred HHHHHHHhCCCeEe
Q 018214 267 EADEILSKKGVVIL 280 (359)
Q Consensus 267 ea~~~L~~rGI~vi 280 (359)
+..+.-+++||++.
T Consensus 88 ~i~~~a~~~~~lvN 101 (457)
T PRK10637 88 RVSEAAEARRIFCN 101 (457)
T ss_pred HHHHHHHHcCcEEE
Confidence 77777778898653
No 196
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.21 E-value=0.77 Score=46.87 Aligned_cols=35 Identities=23% Similarity=0.464 Sum_probs=31.7
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
++++++.|.|.|..|..+|++|.+.|++|+ ++|.+
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~-~~d~~ 37 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGAEVA-AYDAE 37 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeCC
Confidence 578999999999999999999999999988 67764
No 197
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.17 E-value=0.35 Score=46.72 Aligned_cols=36 Identities=25% Similarity=0.321 Sum_probs=31.3
Q ss_pred CCCCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeecCC
Q 018214 202 KSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDI 238 (359)
Q Consensus 202 ~~l~g~~v~VqG-~G~VG~~~a~~L~~~GakvvavsD~ 238 (359)
.+++|++++|.| .|.+|.++|+.|.+.|++|+ +.|.
T Consensus 8 ~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv-~~~~ 44 (306)
T PRK07792 8 TDLSGKVAVVTGAAAGLGRAEALGLARLGATVV-VNDV 44 (306)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEE-EecC
Confidence 458899999999 57899999999999999998 6565
No 198
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=91.15 E-value=0.38 Score=50.13 Aligned_cols=136 Identities=15% Similarity=0.142 Sum_probs=84.0
Q ss_pred CEEEEEeccchHHHHHHHHHHCCCEEEeecCCC--------C-----Cc-cc-ccc----------cc------------
Q 018214 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT--------G-----GV-LN-KEN----------AA------------ 249 (359)
Q Consensus 207 ~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~--------~-----~~-I~-~~n----------a~------------ 249 (359)
.+|.|.|.|++|+++|+.|.+.|.+|. +-|.+ . +. ++ ..+ .+
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~-v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v 80 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKIS-VYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAV 80 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEE-EEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHH
Confidence 368999999999999999999999987 77776 1 11 10 000 11
Q ss_pred ---------cc-cceEEEecCCCC--CCHHHHHHHHhCCCeEecccc------------ccccCcchhhHhhhhcc----
Q 018214 250 ---------DV-KAKFIIEAANHP--TDPEADEILSKKGVVILPDIY------------ANSGGVTVSYFEWVQNI---- 301 (359)
Q Consensus 250 ---------~i-~akiVvegAN~p--~t~ea~~~L~~rGI~viPD~l------------aNaGGVi~s~~E~~~n~---- 301 (359)
.+ +-++|+++.|.- .|.+..+.|.++||.|+=--+ .-.||=- ..|+.++..
T Consensus 81 ~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~gA~~G~~lm~GG~~-~a~~~~~piL~~i 159 (470)
T PTZ00142 81 DETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEEGARYGPSLMPGGNK-EAYDHVKDILEKC 159 (470)
T ss_pred HHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHHHHhcCCEEEEeCCH-HHHHHHHHHHHHH
Confidence 11 246899999985 466777889999999864222 2222211 112222210
Q ss_pred cc-------cccC--------HHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH
Q 018214 302 QG-------FMWE--------EEKVNHELKRYMMSAFKDIKTMCQ-THNCNLRMGAFTL 344 (359)
Q Consensus 302 ~~-------~~w~--------~e~v~~~l~~~m~~~~~~v~~~a~-~~~~~~r~aA~~~ 344 (359)
.. ..|- -+-|+.-++.-+.+.+.+.++.++ +.++++.+.+.++
T Consensus 160 a~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~gl~~~~l~~v~ 218 (470)
T PTZ00142 160 SAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEELSEVF 218 (470)
T ss_pred hhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHH
Confidence 00 1110 123455566677788888888887 6888888776554
No 199
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=91.11 E-value=0.43 Score=36.85 Aligned_cols=60 Identities=22% Similarity=0.297 Sum_probs=40.6
Q ss_pred EEEEEeccchHHHHHHHHHHCCCEEEeecCCCCCcccccccccccceEEEecCCCCCCHHHHHHHHhCCCeEecc
Q 018214 208 KFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPD 282 (359)
Q Consensus 208 ~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~~~~I~~~na~~i~akiVvegAN~p~t~ea~~~L~~rGI~viPD 282 (359)
+|+|.|.|.+|..+|..|.+.|.+|+ +-+...... + ..+..+.....+.|+++||.+.-+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vt-li~~~~~~~-~-------------~~~~~~~~~~~~~l~~~gV~v~~~ 60 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVT-LIERSDRLL-P-------------GFDPDAAKILEEYLRKRGVEVHTN 60 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEE-EEESSSSSS-T-------------TSSHHHHHHHHHHHHHTTEEEEES
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEE-EEeccchhh-h-------------hcCHHHHHHHHHHHHHCCCEEEeC
Confidence 68999999999999999999999886 444422221 0 011112333467789999977654
No 200
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=91.09 E-value=0.74 Score=46.08 Aligned_cols=79 Identities=19% Similarity=0.320 Sum_probs=55.2
Q ss_pred CCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC------------CCcccccccccc-----cceEEEecCCCC-CCH
Q 018214 205 SNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT------------GGVLNKENAADV-----KAKFIIEAANHP-TDP 266 (359)
Q Consensus 205 ~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~------------~~~I~~~na~~i-----~akiVvegAN~p-~t~ 266 (359)
.|.+|+|.|.|.+|..+++.....|++|+++++.+ ..+|+..+.+++ .+.+|+|....+ ...
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~~~~v~~~~~~~D~vid~~G~~~~~~ 257 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTMDFIIDTVSAEHALL 257 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhCCCcEEEcCcCHHHHHHhhCCCcEEEECCCcHHHHH
Confidence 68999999999999999999999999988665432 112332211111 357888887666 446
Q ss_pred HHHHHHHhCCCeEeccc
Q 018214 267 EADEILSKKGVVILPDI 283 (359)
Q Consensus 267 ea~~~L~~rGI~viPD~ 283 (359)
++-+.|+..|.++.-..
T Consensus 258 ~~~~~l~~~G~iv~vG~ 274 (375)
T PLN02178 258 PLFSLLKVSGKLVALGL 274 (375)
T ss_pred HHHHhhcCCCEEEEEcc
Confidence 77788888887765443
No 201
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=91.05 E-value=0.63 Score=45.57 Aligned_cols=33 Identities=30% Similarity=0.478 Sum_probs=29.3
Q ss_pred CCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeec
Q 018214 204 ISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVS 236 (359)
Q Consensus 204 l~g~~v~VqG-~G~VG~~~a~~L~~~Gakvvavs 236 (359)
+++++|.|.| .|-+|+++++.|.+.|++|++++
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~ 35 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYS 35 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEe
Confidence 4689999999 59999999999999999999664
No 202
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.98 E-value=0.69 Score=47.81 Aligned_cols=32 Identities=22% Similarity=0.289 Sum_probs=29.1
Q ss_pred CCCEEEEEeccchHHHHHHHHHHCCCEEEeecCC
Q 018214 205 SNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI 238 (359)
Q Consensus 205 ~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~ 238 (359)
++++|.|.|+|.-|.+++++|.+ |++|+ |+|.
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L~~-g~~v~-v~D~ 36 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEELQN-KYDVI-VYDD 36 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHHhC-CCEEE-EECC
Confidence 57899999999999999999995 99988 8884
No 203
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=90.94 E-value=0.98 Score=44.13 Aligned_cols=77 Identities=21% Similarity=0.391 Sum_probs=53.2
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCC-EEEeecCCC----------C--Ccccccc--cccc-----cceEEEecCCCC
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGG-KVVAVSDIT----------G--GVLNKEN--AADV-----KAKFIIEAANHP 263 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~Ga-kvvavsD~~----------~--~~I~~~n--a~~i-----~akiVvegAN~p 263 (359)
..|.+|+|.|.|.||..+++.+...|+ +|+ ++|.+ | .+|+..+ ..++ ...+|+|..-.+
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi-~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~~ 246 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIV-CADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGHP 246 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEE-EEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCCH
Confidence 368999999999999999999999999 566 44433 1 2233221 1111 256888888765
Q ss_pred -CCHHHHHHHHhCCCeEec
Q 018214 264 -TDPEADEILSKKGVVILP 281 (359)
Q Consensus 264 -~t~ea~~~L~~rGI~viP 281 (359)
...++-+.|+..|.++.=
T Consensus 247 ~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 247 SSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred HHHHHHHHHhhcCCEEEEE
Confidence 346777888888876653
No 204
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=90.92 E-value=0.46 Score=47.54 Aligned_cols=77 Identities=12% Similarity=0.113 Sum_probs=51.1
Q ss_pred HHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCCCCcccccccc----c--ccceEEEe-----c
Q 018214 191 FATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGGVLNKENAA----D--VKAKFIIE-----A 259 (359)
Q Consensus 191 ~~~~~~~~~~g~~l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~~~~I~~~na~----~--i~akiVve-----g 259 (359)
+++..+++.+ .++++++|.|.|.|.+|..++++|.++|++-|.|+..+...+.-+... . -++.+|+- +
T Consensus 160 s~av~~~~~~-~~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~~~~~~~~~~~~~~~~~DvVIs~t~~Ta 238 (338)
T PRK00676 160 SVVQQELRRR-QKSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTLPYRTVVREELSFQDPYDVIFFGSSESA 238 (338)
T ss_pred HHHHHHHHHh-CCccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccccchhhhhhhhhhcccCCCEEEEcCCcCC
Confidence 3334444554 458999999999999999999999999976444887764333322211 1 15667774 5
Q ss_pred CCCC-CCHHH
Q 018214 260 ANHP-TDPEA 268 (359)
Q Consensus 260 AN~p-~t~ea 268 (359)
+..| ++.+.
T Consensus 239 s~~p~i~~~~ 248 (338)
T PRK00676 239 YAFPHLSWES 248 (338)
T ss_pred CCCceeeHHH
Confidence 6666 46553
No 205
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=90.80 E-value=1.1 Score=44.74 Aligned_cols=74 Identities=20% Similarity=0.300 Sum_probs=51.3
Q ss_pred CEEEEEeccchHHHHHHHHHHC-CCEEEeecCCC--------------------------------CCccccc-------
Q 018214 207 MKFAIQGFGNVGSWAAKFFHEH-GGKVVAVSDIT--------------------------------GGVLNKE------- 246 (359)
Q Consensus 207 ~~v~VqG~G~VG~~~a~~L~~~-GakvvavsD~~--------------------------------~~~I~~~------- 246 (359)
.||.|-|||.+|+.+.|.+.+. ...||+|-|.. +..|.-.
T Consensus 3 ~~i~inGfGRIGr~~~r~~~~~~~~~vvaiNd~~~~~~~ayll~yDs~hg~~~~~v~~~~~~l~v~g~~I~v~~~~dp~~ 82 (331)
T PRK15425 3 IKVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPAN 82 (331)
T ss_pred eEEEEEeeChHHHHHHHHHHHCCCCEEEEEecCCCHHHHHHHHccccCCCCcCCcEEecCCEEEECCeEEEEEEcCChhh
Confidence 4899999999999999997644 68999998855 1111111
Q ss_pred -ccccccceEEEecCCCCCCHHHHHHHHhCCCeEe
Q 018214 247 -NAADVKAKFIIEAANHPTDPEADEILSKKGVVIL 280 (359)
Q Consensus 247 -na~~i~akiVvegAN~p~t~ea~~~L~~rGI~vi 280 (359)
....+++.+|+|.+-..+|.+-...-.+.|...+
T Consensus 83 ~~w~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V 117 (331)
T PRK15425 83 LKWDEVGVDVVAEATGLFLTDETARKHITAGAKKV 117 (331)
T ss_pred CcccccCCCEEEEecchhhcHHHHHHHHHCCCEEE
Confidence 2223467799999988887765554455675433
No 206
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=90.78 E-value=0.86 Score=44.69 Aligned_cols=77 Identities=29% Similarity=0.305 Sum_probs=54.0
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCC--C----------C-Ccccc--ccc----ccccceEEEecCCCC-
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI--T----------G-GVLNK--ENA----ADVKAKFIIEAANHP- 263 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~--~----------~-~~I~~--~na----~~i~akiVvegAN~p- 263 (359)
..|.+|+|+|.|.||..++..+...|++|++++-. + | ..++. ++. ..-.+.+|+|....+
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~~ 250 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATGVPP 250 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcCCHH
Confidence 36899999999999999999999999999866421 1 1 11111 110 011467888888776
Q ss_pred CCHHHHHHHHhCCCeEe
Q 018214 264 TDPEADEILSKKGVVIL 280 (359)
Q Consensus 264 ~t~ea~~~L~~rGI~vi 280 (359)
...++-+.|+..|.+++
T Consensus 251 ~~~~~~~~l~~~G~~v~ 267 (355)
T cd08230 251 LAFEALPALAPNGVVIL 267 (355)
T ss_pred HHHHHHHHccCCcEEEE
Confidence 45778888999997764
No 207
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=90.77 E-value=1.2 Score=41.41 Aligned_cols=36 Identities=22% Similarity=0.322 Sum_probs=31.3
Q ss_pred CCCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 203 SISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 203 ~l~g~~v~VqG-~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
++++++++|.| .|.+|.++++.|.+.|++|+ +.|.+
T Consensus 6 ~l~~k~vlItG~s~gIG~~la~~l~~~G~~v~-~~~~~ 42 (266)
T PRK06171 6 NLQGKIIIVTGGSSGIGLAIVKELLANGANVV-NADIH 42 (266)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHHHHCCCEEE-EEeCC
Confidence 47899999999 58999999999999999998 55554
No 208
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=90.72 E-value=1.8 Score=42.24 Aligned_cols=93 Identities=23% Similarity=0.285 Sum_probs=67.6
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHC----CC-------EEEeecCCCCCcccc--------
Q 018214 185 TGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEH----GG-------KVVAVSDITGGVLNK-------- 245 (359)
Q Consensus 185 Tg~Gv~~~~~~~~~~~g~~l~g~~v~VqG~G~VG~~~a~~L~~~----Ga-------kvvavsD~~~~~I~~-------- 245 (359)
||-=+..++..+++..|.+++..|++|-|.|..|..+|+.|.+. |. ++. +.|++ +.|++
T Consensus 4 Ta~V~lAgllnAlk~~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~-~vD~~-Gll~~~r~~l~~~ 81 (279)
T cd05312 4 TAAVALAGLLAALRITGKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIW-LVDSK-GLLTKDRKDLTPF 81 (279)
T ss_pred HHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEE-EEcCC-CeEeCCCCcchHH
Confidence 66666778888888889999999999999999999999998776 87 555 78886 12221
Q ss_pred -----------------cccccccceEEEecCCC--CCCHHHHHHHH---hCCCeE
Q 018214 246 -----------------ENAADVKAKFIIEAANH--PTDPEADEILS---KKGVVI 279 (359)
Q Consensus 246 -----------------~na~~i~akiVvegAN~--p~t~ea~~~L~---~rGI~v 279 (359)
+-++++++-++++.+=. -.|+|.-+.+. +|=|++
T Consensus 82 ~~~~a~~~~~~~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIF 137 (279)
T cd05312 82 KKPFARKDEEKEGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIF 137 (279)
T ss_pred HHHHHhhcCcccCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEE
Confidence 11233477788876642 36888877777 565543
No 209
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=90.71 E-value=0.74 Score=45.86 Aligned_cols=33 Identities=42% Similarity=0.658 Sum_probs=29.5
Q ss_pred CEEEEEeccchHHHHHHHHHHCC--CEEEeecCCC
Q 018214 207 MKFAIQGFGNVGSWAAKFFHEHG--GKVVAVSDIT 239 (359)
Q Consensus 207 ~~v~VqG~G~VG~~~a~~L~~~G--akvvavsD~~ 239 (359)
.+|+|=|||.+|+.+++.+.+.+ .+||||.|..
T Consensus 2 ikV~INGfGrIGR~v~ra~~~~~~dieVVaInd~t 36 (335)
T COG0057 2 IKVAINGFGRIGRLVARAALERDGDIEVVAINDLT 36 (335)
T ss_pred cEEEEecCcHHHHHHHHHHHhCCCCeEEEEEecCC
Confidence 47999999999999999998875 8999999943
No 210
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=90.70 E-value=2.9 Score=44.54 Aligned_cols=148 Identities=15% Similarity=0.101 Sum_probs=100.2
Q ss_pred CHHHHHHHHHHHHHHHHhhcCCCCCcCCCCCCCChhhHHHHHHHhhhhhCCCCccccCcccccCCCCCCCchhHHHHHHH
Q 018214 113 SMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGLGVFFA 192 (359)
Q Consensus 113 s~~e~e~l~r~~~~~l~~~iG~~~di~apDvgt~~~~m~~i~d~~~~~~g~~~~~~tGkp~~~GG~~~r~~aTg~Gv~~~ 192 (359)
+..|-..|+..|++++.... |..-|-=+|++... --.+.+.|+.- .|.. .+--.-||--+..+
T Consensus 221 ~g~eY~~f~defv~av~~~~-P~~~Iq~EDf~~~n--af~iL~kyr~~----------i~~F----nDDiQGTaaV~lAg 283 (559)
T PTZ00317 221 DDDEYYELLDEFMEAVSSRW-PNAVVQFEDFSNNH--CFDLLERYQNK----------YRCF----NDDIQGTGAVIAAG 283 (559)
T ss_pred ChhhHHHHHHHHHHHHHHhC-CCeEEehhhcCCcc--HHHHHHHhccC----------CCEe----cccchhHHHHHHHH
Confidence 55677889999999998876 44445557877643 33566777631 1111 12223477777788
Q ss_pred HHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHH----HCCC-------EEEeecCCCCCccccc---------------
Q 018214 193 TEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFH----EHGG-------KVVAVSDITGGVLNKE--------------- 246 (359)
Q Consensus 193 ~~~~~~~~g~~l~g~~v~VqG~G~VG~~~a~~L~----~~Ga-------kvvavsD~~~~~I~~~--------------- 246 (359)
+..+++..|.+++..|+++-|.|..|-.+|+.|. +.|. ++. +.|++| .|+.+
T Consensus 284 ll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i~-~vD~~G-Ll~~~r~~~l~~~k~~fa~~ 361 (559)
T PTZ00317 284 FLNALKLSGVPPEEQRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFY-LVDSKG-LVTTTRGDKLAKHKVPFART 361 (559)
T ss_pred HHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEE-EEcCCC-eEeCCCCccccHHHHHHhcc
Confidence 8889998899999999999999999999999886 4788 555 778862 11111
Q ss_pred --------------ccccccceEEEecCCC--CCCHHHHHHHHh---CCCeE
Q 018214 247 --------------NAADVKAKFIIEAANH--PTDPEADEILSK---KGVVI 279 (359)
Q Consensus 247 --------------na~~i~akiVvegAN~--p~t~ea~~~L~~---rGI~v 279 (359)
-++.+|..++++.+=- -.|+|.-+...+ |=|++
T Consensus 362 ~~~~~~~~~~~L~e~v~~~KPtvLIG~S~~~g~Ft~evv~~Ma~~~~rPIIF 413 (559)
T PTZ00317 362 DISAEDSSLKTLEDVVRFVKPTALLGLSGVGGVFTEEVVKTMASNVERPIIF 413 (559)
T ss_pred ccccccccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEE
Confidence 1123455777776643 378888777765 65543
No 211
>PRK08605 D-lactate dehydrogenase; Validated
Probab=90.69 E-value=0.33 Score=48.11 Aligned_cols=38 Identities=39% Similarity=0.557 Sum_probs=31.6
Q ss_pred CCCCCCCEEEEEeccchHHHHHHHH-HHCCCEEEeecCCC
Q 018214 201 GKSISNMKFAIQGFGNVGSWAAKFF-HEHGGKVVAVSDIT 239 (359)
Q Consensus 201 g~~l~g~~v~VqG~G~VG~~~a~~L-~~~GakvvavsD~~ 239 (359)
+.+|.|++|.|.|+|++|+.+|+.| ...|.+|++. |.+
T Consensus 141 ~~~l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~-d~~ 179 (332)
T PRK08605 141 SRSIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAY-DPF 179 (332)
T ss_pred cceeCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEE-CCC
Confidence 3458999999999999999999999 5579999854 543
No 212
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=90.56 E-value=0.62 Score=49.24 Aligned_cols=55 Identities=27% Similarity=0.355 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHHHHHH------hCCCCCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 184 ATGLGVFFATEALLAE------HGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 184 aTg~Gv~~~~~~~~~~------~g~~l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
--+.|+..+++..+.. .+.++++++|.|.|.|.+|++++..|.+.|++|+ +.+.+
T Consensus 351 TD~~G~~~~l~~~~~~~~~~~~~~~~~~~k~vlIlGaGGagrAia~~L~~~G~~V~-i~nR~ 411 (529)
T PLN02520 351 TDYIGAISAIEDGLRASGSSPASGSPLAGKLFVVIGAGGAGKALAYGAKEKGARVV-IANRT 411 (529)
T ss_pred ccHHHHHHHHHhhhcccccccccccCCCCCEEEEECCcHHHHHHHHHHHHCCCEEE-EEcCC
Confidence 3567888888754422 2456889999999999999999999999999877 66653
No 213
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=90.52 E-value=0.41 Score=47.31 Aligned_cols=34 Identities=24% Similarity=0.326 Sum_probs=29.5
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCCEEEeecC
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSD 237 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD 237 (359)
|+|+++.|.|+|++|.+.|+.|.+.|.+++...+
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~ 34 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLR 34 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEEC
Confidence 5789999999999999999999999988763333
No 214
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=90.47 E-value=1.2 Score=45.76 Aligned_cols=71 Identities=28% Similarity=0.410 Sum_probs=50.8
Q ss_pred CEEEEEeccchHHHHHHHHHH-CCCEEEeecCCC-------------------CCccc--cc------------------
Q 018214 207 MKFAIQGFGNVGSWAAKFFHE-HGGKVVAVSDIT-------------------GGVLN--KE------------------ 246 (359)
Q Consensus 207 ~~v~VqG~G~VG~~~a~~L~~-~GakvvavsD~~-------------------~~~I~--~~------------------ 246 (359)
.||.|-|||.+|+.+++.+.+ .+.+||+|-|.. .+.|. ++
T Consensus 86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp~~~~~~~ayllkyDS~hG~f~~~v~~~~~~~l~~~G~~I~V~~~~dp 165 (421)
T PLN02272 86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVNDPFIDAKYMAYMFKYDSTHGNFKGTINVVDDSTLEINGKQIKVTSKRDP 165 (421)
T ss_pred eEEEEECcCHHHHHHHHHHhhcCCcEEEEecCCCCCHHHHHHHhhhccCCCCCCCcEEEccCCEEEECCEEEEEEecCCc
Confidence 489999999999999999875 689999998853 11121 11
Q ss_pred ---ccccccceEEEecCCCCCCHHHHHHHHhCCC
Q 018214 247 ---NAADVKAKFIIEAANHPTDPEADEILSKKGV 277 (359)
Q Consensus 247 ---na~~i~akiVvegAN~p~t~ea~~~L~~rGI 277 (359)
....+++.+|+|.+-..+|.+....-.+.|.
T Consensus 166 ~~~~w~~~gVDiVlesTG~f~s~e~a~~hl~aGA 199 (421)
T PLN02272 166 AEIPWGDFGAEYVVESSGVFTTVEKASAHLKGGA 199 (421)
T ss_pred ccCcccccCCCEEEEcCchhccHHHHHHHhhCCC
Confidence 1122357799999988888766555556776
No 215
>PLN02572 UDP-sulfoquinovose synthase
Probab=90.44 E-value=4.6 Score=41.55 Aligned_cols=32 Identities=25% Similarity=0.239 Sum_probs=29.5
Q ss_pred CCCCEEEEEe-ccchHHHHHHHHHHCCCEEEee
Q 018214 204 ISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAV 235 (359)
Q Consensus 204 l~g~~v~VqG-~G~VG~~~a~~L~~~Gakvvav 235 (359)
+++++|.|.| .|-+|+++++.|.+.|++|+++
T Consensus 45 ~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~ 77 (442)
T PLN02572 45 SKKKKVMVIGGDGYCGWATALHLSKRGYEVAIV 77 (442)
T ss_pred ccCCEEEEECCCcHHHHHHHHHHHHCCCeEEEE
Confidence 7889999999 5999999999999999999855
No 216
>PRK05717 oxidoreductase; Validated
Probab=90.35 E-value=0.47 Score=43.96 Aligned_cols=36 Identities=19% Similarity=0.267 Sum_probs=31.4
Q ss_pred CCCCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeecCC
Q 018214 202 KSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDI 238 (359)
Q Consensus 202 ~~l~g~~v~VqG-~G~VG~~~a~~L~~~GakvvavsD~ 238 (359)
.+++|+++.|.| .|.+|+++|+.|.+.|++|+ +.|.
T Consensus 6 ~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~-~~~~ 42 (255)
T PRK05717 6 PGHNGRVALVTGAARGIGLGIAAWLIAEGWQVV-LADL 42 (255)
T ss_pred cccCCCEEEEeCCcchHHHHHHHHHHHcCCEEE-EEcC
Confidence 458899999999 59999999999999999998 4454
No 217
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=90.30 E-value=0.51 Score=46.14 Aligned_cols=36 Identities=28% Similarity=0.355 Sum_probs=33.1
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
|+..+|.|.|+|.+|..+|+.|...|.+=+.+.|.+
T Consensus 17 L~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d 52 (286)
T cd01491 17 LQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTK 52 (286)
T ss_pred HhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 578899999999999999999999999877798877
No 218
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=90.20 E-value=0.43 Score=43.86 Aligned_cols=36 Identities=17% Similarity=0.207 Sum_probs=32.7
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
|+.++|.|.|.|.+|+.+++.|...|..-+.+.|.+
T Consensus 19 L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d 54 (197)
T cd01492 19 LRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR 54 (197)
T ss_pred HHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 678999999999999999999999999766688876
No 219
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=90.01 E-value=3.2 Score=40.46 Aligned_cols=81 Identities=21% Similarity=0.245 Sum_probs=46.2
Q ss_pred CEEEEEe-ccchHHHHHHHHHHCCCEEEeecCCCCCcccccccccc--cceEEEecCCCCCCHHHHHHHHhCCCeEeccc
Q 018214 207 MKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDITGGVLNKENAADV--KAKFIIEAANHPTDPEADEILSKKGVVILPDI 283 (359)
Q Consensus 207 ~~v~VqG-~G~VG~~~a~~L~~~GakvvavsD~~~~~I~~~na~~i--~akiVvegAN~p~t~ea~~~L~~rGI~viPD~ 283 (359)
++|.|.| .|-+|+++++.|.+.|+.++.+.|.....-+......+ ..++...-.+..-...-.+++.+. =||+
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~----~~D~ 77 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICDRAELARVFTEH----QPDC 77 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEecCccccchhhhhhcccCCceEEEECCCcChHHHHHHHhhc----CCCE
Confidence 4788998 59999999999999998876566643211000000010 112222112322223344556553 3899
Q ss_pred cccccCcc
Q 018214 284 YANSGGVT 291 (359)
Q Consensus 284 laNaGGVi 291 (359)
+.|.+|..
T Consensus 78 Vih~A~~~ 85 (355)
T PRK10217 78 VMHLAAES 85 (355)
T ss_pred EEECCccc
Confidence 99998864
No 220
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=89.95 E-value=0.67 Score=43.13 Aligned_cols=34 Identities=18% Similarity=0.226 Sum_probs=29.4
Q ss_pred CCCCEEEEEec-cchHHHHHHHHHHCCCEEEeecCC
Q 018214 204 ISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 238 (359)
Q Consensus 204 l~g~~v~VqG~-G~VG~~~a~~L~~~GakvvavsD~ 238 (359)
++++++.|.|. |-+|.++++.|.+.|++|+. .+.
T Consensus 4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~-~~r 38 (263)
T PRK06200 4 LHGQVALITGGGSGIGRALVERFLAEGARVAV-LER 38 (263)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEE-EeC
Confidence 67899999995 78999999999999999984 444
No 221
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=89.90 E-value=0.58 Score=42.29 Aligned_cols=31 Identities=32% Similarity=0.455 Sum_probs=27.3
Q ss_pred EEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 208 KFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 208 ~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
+|+|.|.|.+|...|..++..|..|+ +.|.+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~-l~d~~ 31 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVT-LYDRS 31 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEE-EE-SS
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEE-EEECC
Confidence 68999999999999999999999998 88988
No 222
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=89.85 E-value=0.84 Score=44.33 Aligned_cols=49 Identities=24% Similarity=0.394 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHCCCE-EEeecCCC
Q 018214 186 GLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGK-VVAVSDIT 239 (359)
Q Consensus 186 g~Gv~~~~~~~~~~~g~~l~g~~v~VqG~G~VG~~~a~~L~~~Gak-vvavsD~~ 239 (359)
+.|...+++ +.+.+++++++.|.|.|-.|++++..|.+.|++ |+ |.+.+
T Consensus 110 ~~G~~~~l~----~~~~~~~~k~vlI~GAGGagrAia~~La~~G~~~V~-I~~R~ 159 (289)
T PRK12548 110 GLGFVRNLR----EHGVDVKGKKLTVIGAGGAATAIQVQCALDGAKEIT-IFNIK 159 (289)
T ss_pred HHHHHHHHH----hcCCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEE-EEeCC
Confidence 566655554 345568899999999999999999999999997 55 66653
No 223
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=89.79 E-value=1.2 Score=47.72 Aligned_cols=32 Identities=19% Similarity=0.364 Sum_probs=29.1
Q ss_pred CEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 207 ~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
.+|+|-|+|.+|+.+++.|.+.|..++ +-|.|
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vv-vID~d 432 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRIT-VLERD 432 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEE-EEECC
Confidence 579999999999999999999999998 66777
No 224
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=89.76 E-value=11 Score=35.18 Aligned_cols=167 Identities=14% Similarity=0.088 Sum_probs=97.9
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCCCCcccccccccccceEEEecCCCC
Q 018214 184 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGGVLNKENAADVKAKFIIEAANHP 263 (359)
Q Consensus 184 aTg~Gv~~~~~~~~~~~g~~l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~~~~I~~~na~~i~akiVvegAN~p 263 (359)
.--++..+.+..+.+ .|.. .+++|+.-+.||-|.++|......|.+++.+.+.+....+........++++.=..+..
T Consensus 30 ~K~R~a~~~l~~a~~-~g~~-~~~~vv~~ssGN~g~alA~~a~~~g~~~~v~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~ 107 (244)
T cd00640 30 FKDRGALNLILLAEE-EGKL-PKGVIIESTGGNTGIALAAAAARLGLKCTIVMPEGASPEKVAQMRALGAEVVLVPGDFD 107 (244)
T ss_pred cHHHHHHHHHHHHHH-cCCC-CCCEEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCHH
Confidence 344666666665554 2321 46777777789999999999999999998777664333333445556788876554422
Q ss_pred -CCHHHHHHHHh-CCCeEecccccccc---CcchhhHhhhhcccc--ccc---------CHHHHHHHHHHHH--------
Q 018214 264 -TDPEADEILSK-KGVVILPDIYANSG---GVTVSYFEWVQNIQG--FMW---------EEEKVNHELKRYM-------- 319 (359)
Q Consensus 264 -~t~ea~~~L~~-rGI~viPD~laNaG---GVi~s~~E~~~n~~~--~~w---------~~e~v~~~l~~~m-------- 319 (359)
....+.++.++ .+..++|.+ .|.. |-...++|..+.... ..| +.--+...++..-
T Consensus 108 ~~~~~a~~~~~~~~~~~~~~~~-~n~~~~~g~~~~~~Ei~~q~~~~~~d~ivvp~GtGg~~~G~~~~~~~~~~~~~ii~v 186 (244)
T cd00640 108 DAIALAKELAEEDPGAYYVNQF-DNPANIAGQGTIGLEILEQLGGQKPDAVVVPVGGGGNIAGIARALKELLPNVKVIGV 186 (244)
T ss_pred HHHHHHHHHHHhCCCCEecCCC-CCHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEE
Confidence 22344566666 677888776 4443 333445665544332 101 0001112221110
Q ss_pred ---------HHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHH
Q 018214 320 ---------MSAFKDIKTMCQTHNC--NLRMGAFTLGVNRVAQAT 353 (359)
Q Consensus 320 ---------~~~~~~v~~~a~~~~~--~~r~aA~~~A~~Rv~~a~ 353 (359)
.+++..+.+.++++++ .+..++-+.|..++.+..
T Consensus 187 ~~~~~~v~d~~~~~a~~~l~~~~gi~~~pssa~~~aa~~~~~~~~ 231 (244)
T cd00640 187 EPEVVTVSDEEALEAIRLLAREEGILVEPSSAAALAAALKLAKKL 231 (244)
T ss_pred eeeEEEECHHHHHHHHHHHHHHcCceECHhHHHHHHHHHHHHHhc
Confidence 3455556666777675 688888888888876543
No 225
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=89.57 E-value=0.5 Score=49.58 Aligned_cols=135 Identities=15% Similarity=0.134 Sum_probs=84.4
Q ss_pred CEEEEEeccchHHHHHHHHHHCCCEEEeecCCC--------C-----Ccc------cc-ccc------------------
Q 018214 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT--------G-----GVL------NK-ENA------------------ 248 (359)
Q Consensus 207 ~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~--------~-----~~I------~~-~na------------------ 248 (359)
.+|.+.|+|++|+.+|+.|.++|.+|+ |.|.+ . +.. +. +-+
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~~V~-V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~a 85 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGFPIS-VYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAP 85 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCCeEE-EECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHH
Confidence 369999999999999999999999988 88876 1 211 00 001
Q ss_pred ---------ccc-cceEEEecCCCC--CCHHHHHHHHhCCCeEeccccc------------cccCcchhhHhhhhc----
Q 018214 249 ---------ADV-KAKFIIEAANHP--TDPEADEILSKKGVVILPDIYA------------NSGGVTVSYFEWVQN---- 300 (359)
Q Consensus 249 ---------~~i-~akiVvegAN~p--~t~ea~~~L~~rGI~viPD~la------------NaGGVi~s~~E~~~n---- 300 (359)
+.+ .-++|+++.|.. .|.+..+.|+++|+.|+=--+. -.||=-. .||-++.
T Consensus 86 V~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA~~G~~im~GG~~~-a~~~v~pvL~~ 164 (493)
T PLN02350 86 VDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGARNGPSLMPGGSFE-AYKNIEDILEK 164 (493)
T ss_pred HHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHhcCCCeEEecCCHH-HHHHHHHHHHH
Confidence 111 346899999985 5677778899999988732221 2222111 1222211
Q ss_pred cc-------cccc--------CHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHH
Q 018214 301 IQ-------GFMW--------EEEKVNHELKRYMMSAFKDIKTMCQT-HNCNLRMGAFT 343 (359)
Q Consensus 301 ~~-------~~~w--------~~e~v~~~l~~~m~~~~~~v~~~a~~-~~~~~r~aA~~ 343 (359)
.. ...| --+-|+.-++..+...+.+.+..+++ .|+++.+.+.+
T Consensus 165 ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld~~~l~~v 223 (493)
T PLN02350 165 VAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSNEELAEV 223 (493)
T ss_pred HhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 00 0101 01234555666667788888888888 59988877665
No 226
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=89.47 E-value=1.1 Score=44.27 Aligned_cols=77 Identities=21% Similarity=0.242 Sum_probs=53.3
Q ss_pred CCCEEEEEeccchHHHHHHHHH-HCCCEEEeecCCCC-----------Cc-ccccccccc-------cceEEEecCCCCC
Q 018214 205 SNMKFAIQGFGNVGSWAAKFFH-EHGGKVVAVSDITG-----------GV-LNKENAADV-------KAKFIIEAANHPT 264 (359)
Q Consensus 205 ~g~~v~VqG~G~VG~~~a~~L~-~~GakvvavsD~~~-----------~~-I~~~na~~i-------~akiVvegAN~p~ 264 (359)
+..+|+|.|.|++|...+..|. ..+.++++++|.+. ++ ...++.+.+ +..+|...+....
T Consensus 3 ~klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~~ 82 (302)
T PRK08300 3 SKLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAGA 82 (302)
T ss_pred CCCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHHH
Confidence 3468999999999998776665 45789999998871 11 111222221 3557888887777
Q ss_pred CHHHHHHHHhCCCeEec
Q 018214 265 DPEADEILSKKGVVILP 281 (359)
Q Consensus 265 t~ea~~~L~~rGI~viP 281 (359)
..+....+.+.|+.++=
T Consensus 83 H~e~a~~a~eaGk~VID 99 (302)
T PRK08300 83 HVRHAAKLREAGIRAID 99 (302)
T ss_pred HHHHHHHHHHcCCeEEE
Confidence 77777778888887653
No 227
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=89.46 E-value=0.55 Score=37.14 Aligned_cols=31 Identities=39% Similarity=0.460 Sum_probs=26.0
Q ss_pred EEEEEeccchHHHHHHHHHHCC---CEEEeecCC
Q 018214 208 KFAIQGFGNVGSWAAKFFHEHG---GKVVAVSDI 238 (359)
Q Consensus 208 ~v~VqG~G~VG~~~a~~L~~~G---akvvavsD~ 238 (359)
|+.|.|+|++|.++++.|.+.| .+|.-+++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r 34 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSR 34 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEES
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccC
Confidence 5788999999999999999999 777634354
No 228
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=89.44 E-value=0.91 Score=43.97 Aligned_cols=51 Identities=18% Similarity=0.128 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHHHHhCC--CCCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 185 TGLGVFFATEALLAEHGK--SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 185 Tg~Gv~~~~~~~~~~~g~--~l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
-+.|...+++ +.+. ++++++|.|.|.|-+|+.++..|.++|++-|.|.+.+
T Consensus 106 D~~G~~~~l~----~~~~~~~~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt 158 (282)
T TIGR01809 106 DWDGIAGALA----NIGKFEPLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRN 158 (282)
T ss_pred CHHHHHHHHH----hhCCccccCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 4667666665 3342 4789999999999999999999999998655577764
No 229
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=89.34 E-value=0.43 Score=43.86 Aligned_cols=44 Identities=23% Similarity=0.307 Sum_probs=35.6
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCCCCcccccccc
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGGVLNKENAA 249 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~~~~I~~~na~ 249 (359)
++.++|.|.|.|.+|+.+++.|...|.+=+.+.|.+ .++..|..
T Consensus 17 L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d--~ve~snl~ 60 (198)
T cd01485 17 LRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR--LVSTEDLG 60 (198)
T ss_pred HhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC--cCChhcCc
Confidence 678999999999999999999999998766688874 34444443
No 230
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=89.30 E-value=1.1 Score=43.16 Aligned_cols=74 Identities=18% Similarity=0.212 Sum_probs=52.1
Q ss_pred CEEEEEe-ccchHHHHHHHHHH-CCCEEEeecCCC-CCcc----------------cccccccc--cceEEEecCCCCCC
Q 018214 207 MKFAIQG-FGNVGSWAAKFFHE-HGGKVVAVSDIT-GGVL----------------NKENAADV--KAKFIIEAANHPTD 265 (359)
Q Consensus 207 ~~v~VqG-~G~VG~~~a~~L~~-~GakvvavsD~~-~~~I----------------~~~na~~i--~akiVvegAN~p~t 265 (359)
.+|+|.| +|++|..+++.+.+ .+.+++++.|.. ...+ .-.+.+.+ .+.+|++.++....
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~p~~~ 81 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTTPEGV 81 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCChHHH
Confidence 3799999 69999999998875 689999999942 1110 00222222 46789998865566
Q ss_pred HHHHHHHHhCCCeEe
Q 018214 266 PEADEILSKKGVVIL 280 (359)
Q Consensus 266 ~ea~~~L~~rGI~vi 280 (359)
.+.-....++|+.++
T Consensus 82 ~~~~~~al~~g~~vV 96 (266)
T TIGR00036 82 LNHLKFALEHGVRLV 96 (266)
T ss_pred HHHHHHHHHCCCCEE
Confidence 677777788888666
No 231
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=89.26 E-value=0.41 Score=47.44 Aligned_cols=35 Identities=29% Similarity=0.564 Sum_probs=33.4
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
+.||-++|-|+|+||...|..|.-.|++|+ |+++|
T Consensus 212 ~aGKv~Vv~GYGdVGKgCaqaLkg~g~~Vi-vTEiD 246 (434)
T KOG1370|consen 212 IAGKVAVVCGYGDVGKGCAQALKGFGARVI-VTEID 246 (434)
T ss_pred ecccEEEEeccCccchhHHHHHhhcCcEEE-EeccC
Confidence 789999999999999999999999999999 99888
No 232
>PRK06125 short chain dehydrogenase; Provisional
Probab=89.17 E-value=3.2 Score=38.44 Aligned_cols=36 Identities=22% Similarity=0.296 Sum_probs=30.7
Q ss_pred CCCCCCEEEEEec-cchHHHHHHHHHHCCCEEEeecCC
Q 018214 202 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 238 (359)
Q Consensus 202 ~~l~g~~v~VqG~-G~VG~~~a~~L~~~GakvvavsD~ 238 (359)
.+++++++.|.|. |.+|..+++.|.+.|++|+.+ +.
T Consensus 3 ~~~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~-~r 39 (259)
T PRK06125 3 LHLAGKRVLITGASKGIGAAAAEAFAAEGCHLHLV-AR 39 (259)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEE-eC
Confidence 3478999999996 789999999999999999844 44
No 233
>PRK08264 short chain dehydrogenase; Validated
Probab=89.16 E-value=1.5 Score=39.90 Aligned_cols=33 Identities=21% Similarity=0.253 Sum_probs=28.8
Q ss_pred CCCCCEEEEEe-ccchHHHHHHHHHHCCC-EEEee
Q 018214 203 SISNMKFAIQG-FGNVGSWAAKFFHEHGG-KVVAV 235 (359)
Q Consensus 203 ~l~g~~v~VqG-~G~VG~~~a~~L~~~Ga-kvvav 235 (359)
+++++++.|.| .|.+|+++|+.|.++|+ +|+.+
T Consensus 3 ~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~ 37 (238)
T PRK08264 3 DIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAA 37 (238)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEE
Confidence 35789999999 59999999999999999 88744
No 234
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=89.11 E-value=1.1 Score=41.89 Aligned_cols=32 Identities=34% Similarity=0.451 Sum_probs=28.2
Q ss_pred CEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 207 ~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
+++.|.|.||+|+.+|+.|...|.+|+ |+.++
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~-igs~r 33 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVI-IGSSR 33 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEE-EecCC
Confidence 578999999999999999999999998 66444
No 235
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=89.07 E-value=3.2 Score=42.16 Aligned_cols=30 Identities=33% Similarity=0.413 Sum_probs=25.4
Q ss_pred EEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 208 KFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 208 ~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
+|+|.|.|.||..+|..|+ .|..|+ +.|.+
T Consensus 2 kI~VIGlGyvGl~~A~~lA-~G~~Vi-gvD~d 31 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIA-QNHEVV-ALDIL 31 (388)
T ss_pred EEEEECCCHHHHHHHHHHH-hCCcEE-EEECC
Confidence 6899999999999997766 499988 55776
No 236
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=89.06 E-value=0.62 Score=48.57 Aligned_cols=133 Identities=20% Similarity=0.205 Sum_probs=79.8
Q ss_pred EEEEeccchHHHHHHHHHHCCCEEEeecCCC---------C---C--cccccc----------c----------------
Q 018214 209 FAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT---------G---G--VLNKEN----------A---------------- 248 (359)
Q Consensus 209 v~VqG~G~VG~~~a~~L~~~GakvvavsD~~---------~---~--~I~~~n----------a---------------- 248 (359)
+.|.|+|++|.++|+.|.+.|.+|+ +.|.+ . + +....+ .
T Consensus 2 IG~IGLG~MG~~mA~nL~~~G~~V~-v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~V 80 (467)
T TIGR00873 2 IGVIGLAVMGSNLALNMADHGFTVS-VYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAV 80 (467)
T ss_pred EEEEeeHHHHHHHHHHHHhcCCeEE-EEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHH
Confidence 6789999999999999999999987 66765 1 1 111000 0
Q ss_pred -----ccc-cceEEEecCCC-C-CCHHHHHHHHhCCCeEeccccccccCcch-------------hhHhhhhcc----cc
Q 018214 249 -----ADV-KAKFIIEAANH-P-TDPEADEILSKKGVVILPDIYANSGGVTV-------------SYFEWVQNI----QG 303 (359)
Q Consensus 249 -----~~i-~akiVvegAN~-p-~t~ea~~~L~~rGI~viPD~laNaGGVi~-------------s~~E~~~n~----~~ 303 (359)
+.+ .-++|+++.|. | .|.+..+.|.++||.|+---+ +||.-. ..+|.++.. ..
T Consensus 81 i~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapV--sGG~~gA~~G~~im~GG~~~a~~~~~p~L~~ia~ 158 (467)
T TIGR00873 81 INQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGV--SGGEEGARKGPSIMPGGSAEAWPLVAPIFQKIAA 158 (467)
T ss_pred HHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCC--CCCHHHHhcCCcCCCCCCHHHHHHHHHHHHHHhh
Confidence 111 23689999995 3 456666789999998874322 333310 112222110 00
Q ss_pred -------ccc--------CHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH
Q 018214 304 -------FMW--------EEEKVNHELKRYMMSAFKDIKTMCQ-THNCNLRMGAFTL 344 (359)
Q Consensus 304 -------~~w--------~~e~v~~~l~~~m~~~~~~v~~~a~-~~~~~~r~aA~~~ 344 (359)
..| --+-|+.-++..|.+.+.+.++..+ +.|+++.+.+.++
T Consensus 159 ~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g~~~~~l~~v~ 215 (467)
T TIGR00873 159 KVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIAEVF 215 (467)
T ss_pred hcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 000 0123445566667777888888774 5888877766555
No 237
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=89.05 E-value=1.3 Score=44.18 Aligned_cols=73 Identities=22% Similarity=0.414 Sum_probs=52.3
Q ss_pred CEEEEEeccchHHHHHHHHHH-CCCEEEeecCCCC----------C-c-----------ccc------cccccc--cceE
Q 018214 207 MKFAIQGFGNVGSWAAKFFHE-HGGKVVAVSDITG----------G-V-----------LNK------ENAADV--KAKF 255 (359)
Q Consensus 207 ~~v~VqG~G~VG~~~a~~L~~-~GakvvavsD~~~----------~-~-----------I~~------~na~~i--~aki 255 (359)
.+|+|.|||.+|+.+++.+.+ .+.++++++|.+. + - ... .+.+.+ ++.+
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDV 81 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADI 81 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCE
Confidence 379999999999999998874 5789999999651 0 0 000 011111 5689
Q ss_pred EEecCCCCCCHHHHHHHHhCCCeE
Q 018214 256 IIEAANHPTDPEADEILSKKGVVI 279 (359)
Q Consensus 256 VvegAN~p~t~ea~~~L~~rGI~v 279 (359)
|++.+...++.+-.....++|..+
T Consensus 82 VIdaT~~~~~~e~a~~~~~aGk~V 105 (341)
T PRK04207 82 VVDATPGGVGAKNKELYEKAGVKA 105 (341)
T ss_pred EEECCCchhhHHHHHHHHHCCCEE
Confidence 999997778888778888888543
No 238
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=89.05 E-value=1.1 Score=45.28 Aligned_cols=85 Identities=28% Similarity=0.432 Sum_probs=56.3
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC-----------CCccc-----cccccc-c-cceEEEecCC----
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT-----------GGVLN-----KENAAD-V-KAKFIIEAAN---- 261 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~-----------~~~I~-----~~na~~-i-~akiVvegAN---- 261 (359)
+.+++|.|.|+|.+|..+++.|...|++|+ +.|.+ +..+. .++..+ + +|.+|+..+-
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa~V~-v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~ 243 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGATVT-ILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGA 243 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCCeEE-EEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCC
Confidence 577889999999999999999999999877 66765 11111 111111 1 5788988752
Q ss_pred -CC--CCHHHHHHHHhCCCeEeccccccccCcc
Q 018214 262 -HP--TDPEADEILSKKGVVILPDIYANSGGVT 291 (359)
Q Consensus 262 -~p--~t~ea~~~L~~rGI~viPD~laNaGGVi 291 (359)
.| ++.+.-+.++. | .++=|+.+..||.+
T Consensus 244 ~~p~lit~~~l~~mk~-g-~vIvDva~d~GG~~ 274 (370)
T TIGR00518 244 KAPKLVSNSLVAQMKP-G-AVIVDVAIDQGGCV 274 (370)
T ss_pred CCCcCcCHHHHhcCCC-C-CEEEEEecCCCCCc
Confidence 24 46555555543 3 45567777777773
No 239
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=88.99 E-value=0.85 Score=44.64 Aligned_cols=81 Identities=33% Similarity=0.401 Sum_probs=55.0
Q ss_pred CEEEEEeccchHHHHHHHHHHCCCEEEeecCCC-----------C----------------------------Cccccc-
Q 018214 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT-----------G----------------------------GVLNKE- 246 (359)
Q Consensus 207 ~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~-----------~----------------------------~~I~~~- 246 (359)
.+|++.|+|++|...|+.|.+.|+.+. |.|.+ | .++..+
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~-v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~ 79 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVT-VYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGEN 79 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEE-EEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCcc
Confidence 378999999999999999999999988 88887 1 001100
Q ss_pred -ccccc-cceEEEecCCCC--CCHHHHHHHHhCCCeEeccccccccCc
Q 018214 247 -NAADV-KAKFIIEAANHP--TDPEADEILSKKGVVILPDIYANSGGV 290 (359)
Q Consensus 247 -na~~i-~akiVvegAN~p--~t~ea~~~L~~rGI~viPD~laNaGGV 290 (359)
-+... +-+++++-.... .+.+..+.++++|+.++=--+ +||+
T Consensus 80 g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPV--sGg~ 125 (286)
T COG2084 80 GLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPV--SGGV 125 (286)
T ss_pred chhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCc--cCCc
Confidence 00001 245666665553 456778899999998875433 4444
No 240
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=88.92 E-value=1.1 Score=42.73 Aligned_cols=50 Identities=20% Similarity=0.195 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 185 TGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 185 Tg~Gv~~~~~~~~~~~g~~l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
-+.|...+++. .+...+++++.|.|.|.+|+.++..|.+.|++|+ |.+.+
T Consensus 100 D~~G~~~~l~~----~~~~~~~k~vliiGaGg~g~aia~~L~~~g~~v~-v~~R~ 149 (270)
T TIGR00507 100 DGIGLVSDLER----LIPLRPNQRVLIIGAGGAARAVALPLLKADCNVI-IANRT 149 (270)
T ss_pred CHHHHHHHHHh----cCCCccCCEEEEEcCcHHHHHHHHHHHHCCCEEE-EEeCC
Confidence 56676666543 3445678999999999999999999999999876 66664
No 241
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=88.91 E-value=1.7 Score=43.53 Aligned_cols=74 Identities=20% Similarity=0.252 Sum_probs=51.8
Q ss_pred CEEEEEeccchHHHHHHHHHH-CCCEEEeecCCC-------------------CCc---------cccc--------c--
Q 018214 207 MKFAIQGFGNVGSWAAKFFHE-HGGKVVAVSDIT-------------------GGV---------LNKE--------N-- 247 (359)
Q Consensus 207 ~~v~VqG~G~VG~~~a~~L~~-~GakvvavsD~~-------------------~~~---------I~~~--------n-- 247 (359)
.||+|-|||.+|+.+.|.+.+ ...+||+|-|.. ... |+.. +
T Consensus 3 ~ki~INGfGRIGr~v~r~~~~~~~~~vvaiNd~~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~~~~~~dp~ 82 (337)
T PTZ00023 3 VKLGINGFGRIGRLVFRAALEREDVEVVAINDPFMTLDYMCYLLKYDSVHGSLPAEVSVTDGFLMIGSKKVHVFFEKDPA 82 (337)
T ss_pred eEEEEECcChHHHHHHHHHHhcCCeEEEEecCCCCChHHhhhhheeecCCCCCCCcEEecCCEEEECCeEEEEEeCCChh
Confidence 489999999999999998764 468999998832 111 1111 1
Q ss_pred ---cccccceEEEecCCCCCCHHHHHHHHhCCCeEe
Q 018214 248 ---AADVKAKFIIEAANHPTDPEADEILSKKGVVIL 280 (359)
Q Consensus 248 ---a~~i~akiVvegAN~p~t~ea~~~L~~rGI~vi 280 (359)
....++.+|+|.+-..+|.+-.....++|...|
T Consensus 83 ~lpW~~~gvDiVle~tG~~~s~~~a~~~l~aGak~V 118 (337)
T PTZ00023 83 AIPWGKNGVDVVCESTGVFLTKEKAQAHLKGGAKKV 118 (337)
T ss_pred hCCccccCCCEEEEecchhcCHHHHHHHhhCCCEEE
Confidence 122367799999988888776666667786543
No 242
>PRK06349 homoserine dehydrogenase; Provisional
Probab=88.80 E-value=1.1 Score=46.05 Aligned_cols=74 Identities=15% Similarity=0.190 Sum_probs=47.0
Q ss_pred CEEEEEeccchHHHHHHHHHHC----------CCEEEeecCCCCCc---cc------cccccc----ccceEEEecCCCC
Q 018214 207 MKFAIQGFGNVGSWAAKFFHEH----------GGKVVAVSDITGGV---LN------KENAAD----VKAKFIIEAANHP 263 (359)
Q Consensus 207 ~~v~VqG~G~VG~~~a~~L~~~----------GakvvavsD~~~~~---I~------~~na~~----i~akiVvegAN~p 263 (359)
.+|+|.|+|+||+.+++.|.++ ..++++|+|.+... +. -++.+. -...+|+|...++
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg~~ 83 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMGGI 83 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCCCc
Confidence 5799999999999999888543 46899999876111 11 012222 2467899887543
Q ss_pred C-CHHHHHHHHhCCCeEe
Q 018214 264 T-DPEADEILSKKGVVIL 280 (359)
Q Consensus 264 ~-t~ea~~~L~~rGI~vi 280 (359)
. ..+.-....++|..|+
T Consensus 84 ~~~~~~~~~aL~~GkhVV 101 (426)
T PRK06349 84 EPARELILKALEAGKHVV 101 (426)
T ss_pred hHHHHHHHHHHHCCCeEE
Confidence 1 1233334567887775
No 243
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=88.76 E-value=2 Score=41.47 Aligned_cols=78 Identities=23% Similarity=0.273 Sum_probs=53.9
Q ss_pred CCCEEEEEeccchHHHHHHHHHHCCCE-EEeecCCC---------C--Ccccccc--cccc-------cceEEEecCCCC
Q 018214 205 SNMKFAIQGFGNVGSWAAKFFHEHGGK-VVAVSDIT---------G--GVLNKEN--AADV-------KAKFIIEAANHP 263 (359)
Q Consensus 205 ~g~~v~VqG~G~VG~~~a~~L~~~Gak-vvavsD~~---------~--~~I~~~n--a~~i-------~akiVvegAN~p 263 (359)
.|.+|.|.|.|.+|..+++.+...|++ |++++... | .+++... .+++ .+.+|++..-.+
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~g~~ 242 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECSGNT 242 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECCCCH
Confidence 589999999999999999999999999 88543322 1 2233211 1111 356888877666
Q ss_pred CC-HHHHHHHHhCCCeEecc
Q 018214 264 TD-PEADEILSKKGVVILPD 282 (359)
Q Consensus 264 ~t-~ea~~~L~~rGI~viPD 282 (359)
.. .++-+.|+..|.+++-.
T Consensus 243 ~~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 243 AARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred HHHHHHHHHhhcCCEEEEEc
Confidence 43 56778888888776543
No 244
>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=88.75 E-value=1.3 Score=43.71 Aligned_cols=89 Identities=22% Similarity=0.183 Sum_probs=62.3
Q ss_pred hCCCCCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeecCCCCCcccccccc----cccceEEEecCCCCCCHHHHHHHHh
Q 018214 200 HGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDITGGVLNKENAA----DVKAKFIIEAANHPTDPEADEILSK 274 (359)
Q Consensus 200 ~g~~l~g~~v~VqG-~G~VG~~~a~~L~~~GakvvavsD~~~~~I~~~na~----~i~akiVvegAN~p~t~ea~~~L~~ 274 (359)
....++++|+.|.| .|-||+|+++.|...|.+|+ ++|..-+-+ .+|.. .-+..++.-=-|.|++.++|+|.+-
T Consensus 21 ~~~p~~~lrI~itGgaGFIgSHLvdkLm~egh~VI-a~Dn~ftg~-k~n~~~~~~~~~fel~~hdv~~pl~~evD~IyhL 98 (350)
T KOG1429|consen 21 QVKPSQNLRILITGGAGFIGSHLVDKLMTEGHEVI-ALDNYFTGR-KENLEHWIGHPNFELIRHDVVEPLLKEVDQIYHL 98 (350)
T ss_pred cccCCCCcEEEEecCcchHHHHHHHHHHhcCCeEE-EEecccccc-hhhcchhccCcceeEEEeechhHHHHHhhhhhhh
Confidence 34567889999998 68999999999999999999 667651111 11111 1245677777778899999999887
Q ss_pred CCCeEeccccccccCc
Q 018214 275 KGVVILPDIYANSGGV 290 (359)
Q Consensus 275 rGI~viPD~laNaGGV 290 (359)
.-..-=|+|.-|-=-+
T Consensus 99 Aapasp~~y~~npvkt 114 (350)
T KOG1429|consen 99 AAPASPPHYKYNPVKT 114 (350)
T ss_pred ccCCCCcccccCccce
Confidence 6666556665554333
No 245
>PRK04148 hypothetical protein; Provisional
Probab=88.71 E-value=1 Score=39.25 Aligned_cols=34 Identities=32% Similarity=0.307 Sum_probs=29.5
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
.+++++++.|+| -|.++|+.|.+.|..|+++ |.+
T Consensus 15 ~~~~kileIG~G-fG~~vA~~L~~~G~~ViaI-Di~ 48 (134)
T PRK04148 15 GKNKKIVELGIG-FYFKVAKKLKESGFDVIVI-DIN 48 (134)
T ss_pred ccCCEEEEEEec-CCHHHHHHHHHCCCEEEEE-ECC
Confidence 367899999999 8999999999999999954 664
No 246
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=88.69 E-value=0.53 Score=47.33 Aligned_cols=34 Identities=26% Similarity=0.535 Sum_probs=29.4
Q ss_pred CCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 205 SNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 205 ~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
.-++++|.||||+|...|+.|.++|..++ ++|..
T Consensus 51 ~tl~IaIIGfGnmGqflAetli~aGh~li-~hsRs 84 (480)
T KOG2380|consen 51 ATLVIAIIGFGNMGQFLAETLIDAGHGLI-CHSRS 84 (480)
T ss_pred cceEEEEEecCcHHHHHHHHHHhcCceeE-ecCcc
Confidence 45789999999999999999999999998 44443
No 247
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=88.68 E-value=0.63 Score=42.65 Aligned_cols=33 Identities=27% Similarity=0.394 Sum_probs=28.9
Q ss_pred CCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeec
Q 018214 204 ISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVS 236 (359)
Q Consensus 204 l~g~~v~VqG-~G~VG~~~a~~L~~~Gakvvavs 236 (359)
+++++++|.| .|.+|+++|+.|.+.|++|+.+.
T Consensus 3 l~~k~ilItGas~gIG~~la~~l~~~G~~vv~~~ 36 (253)
T PRK08642 3 ISEQTVLVTGGSRGLGAAIARAFAREGARVVVNY 36 (253)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEc
Confidence 5788999998 69999999999999999998443
No 248
>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional
Probab=88.62 E-value=0.66 Score=45.30 Aligned_cols=35 Identities=26% Similarity=0.325 Sum_probs=31.5
Q ss_pred CCCCCCEEEEEecc---chHHHHHHHHHHCCCEEEeecC
Q 018214 202 KSISNMKFAIQGFG---NVGSWAAKFFHEHGGKVVAVSD 237 (359)
Q Consensus 202 ~~l~g~~v~VqG~G---~VG~~~a~~L~~~GakvvavsD 237 (359)
.+++||+++|.|.| -+|+++|+.|++.|++|| +.|
T Consensus 4 ~~~~gk~alITGa~~~~GIG~a~A~~la~~Ga~Vv-v~~ 41 (299)
T PRK06300 4 IDLTGKIAFIAGIGDDQGYGWGIAKALAEAGATIL-VGT 41 (299)
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHHCCCEEE-EEe
Confidence 45789999999996 799999999999999998 665
No 249
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=88.57 E-value=1.1 Score=43.05 Aligned_cols=74 Identities=22% Similarity=0.258 Sum_probs=45.2
Q ss_pred CEEEEEeccchHHHHHHHHHHC-CCEEEeecCCCCC------cc-----ccccccc--ccceEEEecCCCCCCHHHHHHH
Q 018214 207 MKFAIQGFGNVGSWAAKFFHEH-GGKVVAVSDITGG------VL-----NKENAAD--VKAKFIIEAANHPTDPEADEIL 272 (359)
Q Consensus 207 ~~v~VqG~G~VG~~~a~~L~~~-GakvvavsD~~~~------~I-----~~~na~~--i~akiVvegAN~p~t~ea~~~L 272 (359)
.||.|.|+|++|...++.|.+. +..++++++.+.. .+ --++.+. -+.-+|+|.+..+...+--...
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~~~~e~~~~a 81 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHAALKEHVVPI 81 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHHHHHHHHHHH
Confidence 4899999999999999998865 6788888755311 00 0111221 2356788877655433333333
Q ss_pred HhCCCeEe
Q 018214 273 SKKGVVIL 280 (359)
Q Consensus 273 ~~rGI~vi 280 (359)
.++|+.++
T Consensus 82 L~aGk~Vv 89 (265)
T PRK13303 82 LKAGIDCA 89 (265)
T ss_pred HHcCCCEE
Confidence 45666554
No 250
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=88.50 E-value=1.1 Score=43.65 Aligned_cols=31 Identities=26% Similarity=0.361 Sum_probs=27.2
Q ss_pred EEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 208 KFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 208 ~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
+|.+.|.|++|...|+.|.+.|..|+ |.|.+
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~-v~~~~ 32 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGHQLH-VTTIG 32 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEE-EEeCC
Confidence 68999999999999999999999886 66654
No 251
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=88.45 E-value=2.3 Score=40.96 Aligned_cols=93 Identities=23% Similarity=0.213 Sum_probs=66.8
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHCCCE-----------EEeecCCCCCccccc-------
Q 018214 185 TGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGK-----------VVAVSDITGGVLNKE------- 246 (359)
Q Consensus 185 Tg~Gv~~~~~~~~~~~g~~l~g~~v~VqG~G~VG~~~a~~L~~~Gak-----------vvavsD~~~~~I~~~------- 246 (359)
||-=+..++..+++..|.+++..||+|-|.|..|-.+|+.|.+.+.+ +. +.|++ +.|+.+
T Consensus 4 TaaV~lAgllnAlk~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~-~vD~~-Gll~~~r~~l~~~ 81 (254)
T cd00762 4 TASVAVAGLLAALKVTKKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIW-XVDRK-GLLVKNRKETCPN 81 (254)
T ss_pred hHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEE-EECCC-CeEeCCCCccCHH
Confidence 56666777888888889999999999999999999999999887764 44 77886 222211
Q ss_pred -------------------ccccccceEEEecCCCC--CCHHHHHHHH---hCCCeE
Q 018214 247 -------------------NAADVKAKFIIEAANHP--TDPEADEILS---KKGVVI 279 (359)
Q Consensus 247 -------------------na~~i~akiVvegAN~p--~t~ea~~~L~---~rGI~v 279 (359)
-++++++.++++.+=-| .|+|.-+.+. +|=|++
T Consensus 82 ~~~~~~~~~~~~~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIF 138 (254)
T cd00762 82 EYHLARFANPERESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIF 138 (254)
T ss_pred HHHHHHHcCcccccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEE
Confidence 12234677777765423 6888777777 665543
No 252
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=88.44 E-value=1.2 Score=43.39 Aligned_cols=51 Identities=20% Similarity=0.178 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 185 TGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 185 Tg~Gv~~~~~~~~~~~g~~l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
-+.|...+++ ..+.++++++|.|.|.|-.+++++-.|.+.|++-|.|.+.+
T Consensus 107 D~~Gf~~~l~----~~~~~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt 157 (288)
T PRK12749 107 DGTGHIRAIK----ESGFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRR 157 (288)
T ss_pred CHHHHHHHHH----hcCCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 3566666554 45778899999999999999999999999998555587764
No 253
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=88.44 E-value=1.8 Score=44.28 Aligned_cols=72 Identities=28% Similarity=0.400 Sum_probs=48.9
Q ss_pred CEEEEEeccchHHHHHHHHHHC---CCEEEeecCCC---------------------------------CCccc------
Q 018214 207 MKFAIQGFGNVGSWAAKFFHEH---GGKVVAVSDIT---------------------------------GGVLN------ 244 (359)
Q Consensus 207 ~~v~VqG~G~VG~~~a~~L~~~---GakvvavsD~~---------------------------------~~~I~------ 244 (359)
.+|+|-|||.+|+.+.+.|.+. ...|++|-|.. +..|.
T Consensus 61 ~kVaInGfGrIGR~vlr~l~~~~~~~~evvaINd~~~~~~~ayLl~yDS~hG~f~~~v~~~~g~~l~v~gk~I~v~~~~d 140 (395)
T PLN03096 61 IKVAINGFGRIGRNFLRCWHGRKDSPLDVVAINDTGGVKQASHLLKYDSTLGTFDADVKPVGDDAISVDGKVIKVVSDRN 140 (395)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCCCeEEEEEcCCCCHHHHHHHHhhcccCCCcCCcEEEecCCEEEECCEEEEEEEcCC
Confidence 5899999999999999999876 46888887633 11111
Q ss_pred ccc--cccccceEEEecCCCCCCHHHHHHHHhCCCe
Q 018214 245 KEN--AADVKAKFIIEAANHPTDPEADEILSKKGVV 278 (359)
Q Consensus 245 ~~n--a~~i~akiVvegAN~p~t~ea~~~L~~rGI~ 278 (359)
+++ ..+.++.+|+|.+-..++.+....-.+.|..
T Consensus 141 p~~~~w~~~gvDiVie~TG~f~s~~~a~~hl~aGAk 176 (395)
T PLN03096 141 PLNLPWGELGIDLVIEGTGVFVDREGAGKHIQAGAK 176 (395)
T ss_pred cccccccccCCCEEEECcchhhhHHHHHHHHHCCCE
Confidence 111 1124688999999888776655545556743
No 254
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=88.41 E-value=0.65 Score=42.29 Aligned_cols=32 Identities=44% Similarity=0.610 Sum_probs=25.2
Q ss_pred CEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 207 ~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
++|+|.|.|-||..+|-.|++.|.+|+++ |.+
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~-D~~ 32 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGV-DID 32 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE--S-
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEE-eCC
Confidence 47999999999999999999999999955 776
No 255
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=88.41 E-value=2.8 Score=36.99 Aligned_cols=31 Identities=32% Similarity=0.581 Sum_probs=27.6
Q ss_pred EEEEEeccchHHHHHHHHH-HCCCEEEeecCC
Q 018214 208 KFAIQGFGNVGSWAAKFFH-EHGGKVVAVSDI 238 (359)
Q Consensus 208 ~v~VqG~G~VG~~~a~~L~-~~GakvvavsD~ 238 (359)
+|+|.|||.+|+.+++.+. ..+.+++++.|.
T Consensus 2 kv~I~G~GriGr~v~~~~~~~~~~~lvai~d~ 33 (149)
T smart00846 2 KVGINGFGRIGRLVLRALLERPDIEVVAINDL 33 (149)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCCEEEEeecC
Confidence 7899999999999999887 468999999985
No 256
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=88.39 E-value=0.51 Score=47.21 Aligned_cols=72 Identities=19% Similarity=0.286 Sum_probs=42.5
Q ss_pred EEEEeccchHHHHHHHHHHCCC--EEEeecCCCCC-----------------cccccccc---cc--cceEEEecCCCCC
Q 018214 209 FAIQGFGNVGSWAAKFFHEHGG--KVVAVSDITGG-----------------VLNKENAA---DV--KAKFIIEAANHPT 264 (359)
Q Consensus 209 v~VqG~G~VG~~~a~~L~~~Ga--kvvavsD~~~~-----------------~I~~~na~---~i--~akiVvegAN~p~ 264 (359)
|.|.|.|.||+.+++.|.+.+- +|+ |+|.+.. .++..|.+ ++ +|.+|+..+..+.
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~-va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~~ 79 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVT-VADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPFF 79 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEE-EEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGGG
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEE-EEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccch
Confidence 5789999999999999998875 566 8888610 11112222 11 5667776665555
Q ss_pred CHHHHHHHHhCCCeEec
Q 018214 265 DPEADEILSKKGVVILP 281 (359)
Q Consensus 265 t~ea~~~L~~rGI~viP 281 (359)
.+..-+...+.|+.|+-
T Consensus 80 ~~~v~~~~i~~g~~yvD 96 (386)
T PF03435_consen 80 GEPVARACIEAGVHYVD 96 (386)
T ss_dssp HHHHHHHHHHHT-EEEE
T ss_pred hHHHHHHHHHhCCCeec
Confidence 55555566666666554
No 257
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=88.20 E-value=2.1 Score=43.00 Aligned_cols=73 Identities=22% Similarity=0.307 Sum_probs=50.9
Q ss_pred CEEEEEeccchHHHHHHHHHHC-CCEEEeecCCC--------------------------------CCcc------cccc
Q 018214 207 MKFAIQGFGNVGSWAAKFFHEH-GGKVVAVSDIT--------------------------------GGVL------NKEN 247 (359)
Q Consensus 207 ~~v~VqG~G~VG~~~a~~L~~~-GakvvavsD~~--------------------------------~~~I------~~~n 247 (359)
.||.|-|||.+|+.+.|.+.+. ...||+|-|.. +..| ++++
T Consensus 3 ~ki~INGfGRIGR~~~r~~~~~~~~~vvaINd~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~v~g~~I~v~~~~dp~~ 82 (343)
T PRK07729 3 TKVAINGFGRIGRMVFRKAIKESAFEIVAINASYPSETLAHLIKYDTVHGKFDGTVEAFEDHLLVDGKKIRLLNNRDPKE 82 (343)
T ss_pred eEEEEECcChHHHHHHHHHhhcCCcEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEcCChhh
Confidence 4899999999999999997654 58999998854 1111 1111
Q ss_pred --cccccceEEEecCCCCCCHHHHHHHHhCCCeE
Q 018214 248 --AADVKAKFIIEAANHPTDPEADEILSKKGVVI 279 (359)
Q Consensus 248 --a~~i~akiVvegAN~p~t~ea~~~L~~rGI~v 279 (359)
....++.+|+|.+-..+|.+......+.|...
T Consensus 83 ~~W~~~gvDiVle~tG~f~s~~~a~~hl~aGak~ 116 (343)
T PRK07729 83 LPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKK 116 (343)
T ss_pred CcccccCCCEEEEccchhhhHhHHHHHHHcCCeE
Confidence 12246789999998888876655555677543
No 258
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=88.18 E-value=1.8 Score=43.32 Aligned_cols=72 Identities=24% Similarity=0.314 Sum_probs=49.6
Q ss_pred CEEEEEeccchHHHHHHHHHHC---CCEEEeecCCC--------------------------------CCc------ccc
Q 018214 207 MKFAIQGFGNVGSWAAKFFHEH---GGKVVAVSDIT--------------------------------GGV------LNK 245 (359)
Q Consensus 207 ~~v~VqG~G~VG~~~a~~L~~~---GakvvavsD~~--------------------------------~~~------I~~ 245 (359)
.||.|-|||.+|+.+.|.+.+. ..+||+|-|.. |.. .++
T Consensus 2 ~ki~INGfGRIGR~~~R~~~~~~~~~~~vvaind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~I~v~~~~dp 81 (337)
T PRK07403 2 IRVAINGFGRIGRNFLRCWLGRENSQLELVAINDTSDPRTNAHLLKYDSMLGKLNADISADENSITVNGKTIKCVSDRNP 81 (337)
T ss_pred eEEEEEccChHHHHHHHHHHhccCCCeEEEEecCCCCHHHHHHHHhhccCCCCCCCcEEEcCCEEEECCEEEEEEEcCCc
Confidence 3799999999999999987654 58899998854 111 111
Q ss_pred cc--cccccceEEEecCCCCCCHHHHHHHHhCCCe
Q 018214 246 EN--AADVKAKFIIEAANHPTDPEADEILSKKGVV 278 (359)
Q Consensus 246 ~n--a~~i~akiVvegAN~p~t~ea~~~L~~rGI~ 278 (359)
++ ...+++.+|+|.+-..+|.+-.....+.|..
T Consensus 82 ~~~~W~~~gvDiV~e~tG~f~s~~~a~~hl~aGak 116 (337)
T PRK07403 82 LNLPWKEWGIDLIIESTGVFVTKEGASKHIQAGAK 116 (337)
T ss_pred ccCChhhcCCCEEEeccchhhhHHHHHHHhhCCcE
Confidence 11 1234688999999888777655544456643
No 259
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=88.14 E-value=0.73 Score=45.17 Aligned_cols=77 Identities=14% Similarity=0.145 Sum_probs=51.4
Q ss_pred CCCEEEEEeccchHHHHHHHHHH-CC-CEEEeecCCC----------CCccc-ccccccccceEEEecCCCCC----CHH
Q 018214 205 SNMKFAIQGFGNVGSWAAKFFHE-HG-GKVVAVSDIT----------GGVLN-KENAADVKAKFIIEAANHPT----DPE 267 (359)
Q Consensus 205 ~g~~v~VqG~G~VG~~~a~~L~~-~G-akvvavsD~~----------~~~I~-~~na~~i~akiVvegAN~p~----t~e 267 (359)
.|.+|+|.|.|.||..++..+.. .| ++|++ +|.+ +.... .+-.+.+.+.+|+|.+.++. -.+
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~-~~~~~~k~~~a~~~~~~~~~~~~~~~~g~d~viD~~G~~~~~~~~~~ 241 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVV-FGKHQEKLDLFSFADETYLIDDIPEDLAVDHAFECVGGRGSQSAINQ 241 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEE-EeCcHhHHHHHhhcCceeehhhhhhccCCcEEEECCCCCccHHHHHH
Confidence 58999999999999999888875 55 57774 4444 11111 11123345789999887543 356
Q ss_pred HHHHHHhCCCeEecc
Q 018214 268 ADEILSKKGVVILPD 282 (359)
Q Consensus 268 a~~~L~~rGI~viPD 282 (359)
+-+.|+..|.+++=.
T Consensus 242 ~~~~l~~~G~iv~~G 256 (341)
T cd08237 242 IIDYIRPQGTIGLMG 256 (341)
T ss_pred HHHhCcCCcEEEEEe
Confidence 667888889876543
No 260
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=88.02 E-value=0.83 Score=42.25 Aligned_cols=36 Identities=14% Similarity=0.258 Sum_probs=31.3
Q ss_pred CCCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 203 SISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 203 ~l~g~~v~VqG-~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
+++++++.|.| .|.+|.++++.|.+.|++|+ +.+.+
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~-~~~r~ 43 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVI-LNGRD 43 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCCEEE-EEeCC
Confidence 47899999999 49999999999999999998 55554
No 261
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=88.00 E-value=1.1 Score=43.52 Aligned_cols=137 Identities=18% Similarity=0.280 Sum_probs=78.7
Q ss_pred EEEEEeccchHHHHHHHHHHCCCEEEeecCCC----------CCccc--------c------------------ccccc-
Q 018214 208 KFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT----------GGVLN--------K------------------ENAAD- 250 (359)
Q Consensus 208 ~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~----------~~~I~--------~------------------~na~~- 250 (359)
+|.|.|+|++|...|+.|.+.|..|+ +.|.+ +-... . +..+.
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~-v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~~~i 80 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEVV-GYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVIKDL 80 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEE-EEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHHHHH
Confidence 68999999999999999999999988 77776 10000 0 00011
Q ss_pred ---c-cceEEEecCCC-C-CCHHHHHHHHhCCCeEeccccc------cccC-cch----hhHhhhhc----ccc----cc
Q 018214 251 ---V-KAKFIIEAANH-P-TDPEADEILSKKGVVILPDIYA------NSGG-VTV----SYFEWVQN----IQG----FM 305 (359)
Q Consensus 251 ---i-~akiVvegAN~-p-~t~ea~~~L~~rGI~viPD~la------NaGG-Vi~----s~~E~~~n----~~~----~~ 305 (359)
+ +-++|++-++. | .+.+..+.+.++|+.|+---+. -.|= +++ ..|+.++. ... ..
T Consensus 81 ~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G~~~~a~~g~~~~~gG~~~~~~~~~~~l~~~~~~~~~~~ 160 (299)
T PRK12490 81 YPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSGGVWGLRNGYCLMVGGDKEIYDRLEPVFKALAPEGPGYV 160 (299)
T ss_pred hccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCCCHHHHhcCCeEEecCCHHHHHHHHHHHHHhcCcCCcEE
Confidence 1 22578887665 3 4566677899999987642111 1110 111 11222221 110 11
Q ss_pred cC--------HHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHH
Q 018214 306 WE--------EEKVNHELKRYMMSAFKDIKTMCQTHN--CNLRMGAFTLG 345 (359)
Q Consensus 306 w~--------~e~v~~~l~~~m~~~~~~v~~~a~~~~--~~~r~aA~~~A 345 (359)
+- -+-++.-+...+...+.+.+..+++.+ +++.+...++.
T Consensus 161 ~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~~~ 210 (299)
T PRK12490 161 HAGPVGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARLWR 210 (299)
T ss_pred EECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHc
Confidence 10 112333344455567788888899988 88877766553
No 262
>PRK06182 short chain dehydrogenase; Validated
Probab=87.99 E-value=0.74 Score=43.20 Aligned_cols=31 Identities=16% Similarity=0.209 Sum_probs=27.9
Q ss_pred CCCEEEEEec-cchHHHHHHHHHHCCCEEEee
Q 018214 205 SNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAV 235 (359)
Q Consensus 205 ~g~~v~VqG~-G~VG~~~a~~L~~~Gakvvav 235 (359)
+++++.|.|. |.+|.++++.|.+.|++|+++
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~ 33 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGYTVYGA 33 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence 5789999994 899999999999999999855
No 263
>PRK12828 short chain dehydrogenase; Provisional
Probab=87.89 E-value=0.84 Score=41.20 Aligned_cols=33 Identities=30% Similarity=0.580 Sum_probs=29.3
Q ss_pred CCCCCEEEEEe-ccchHHHHHHHHHHCCCEEEee
Q 018214 203 SISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAV 235 (359)
Q Consensus 203 ~l~g~~v~VqG-~G~VG~~~a~~L~~~Gakvvav 235 (359)
.++++++.|.| .|.+|+++++.|.+.|++|+.+
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~ 37 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLAARGARVALI 37 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEE
Confidence 36789999998 5999999999999999998844
No 264
>PRK06128 oxidoreductase; Provisional
Probab=87.88 E-value=5 Score=38.43 Aligned_cols=33 Identities=21% Similarity=0.310 Sum_probs=29.3
Q ss_pred CCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeecC
Q 018214 204 ISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSD 237 (359)
Q Consensus 204 l~g~~v~VqG-~G~VG~~~a~~L~~~GakvvavsD 237 (359)
++++++.|.| .|-+|.++|+.|.+.|++|+ +.+
T Consensus 53 l~~k~vlITGas~gIG~~~a~~l~~~G~~V~-i~~ 86 (300)
T PRK06128 53 LQGRKALITGADSGIGRATAIAFAREGADIA-LNY 86 (300)
T ss_pred cCCCEEEEecCCCcHHHHHHHHHHHcCCEEE-EEe
Confidence 7899999999 59999999999999999997 443
No 265
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=87.87 E-value=0.84 Score=42.77 Aligned_cols=34 Identities=15% Similarity=0.263 Sum_probs=29.3
Q ss_pred CCCCCEEEEEec---cchHHHHHHHHHHCCCEEEeecC
Q 018214 203 SISNMKFAIQGF---GNVGSWAAKFFHEHGGKVVAVSD 237 (359)
Q Consensus 203 ~l~g~~v~VqG~---G~VG~~~a~~L~~~GakvvavsD 237 (359)
+++|+++.|.|. +-+|..+|+.|.+.|++|+ +.+
T Consensus 3 ~l~~k~~lItGas~~~GIG~aia~~la~~G~~v~-~~~ 39 (258)
T PRK07370 3 DLTGKKALVTGIANNRSIAWGIAQQLHAAGAELG-ITY 39 (258)
T ss_pred ccCCcEEEEeCCCCCCchHHHHHHHHHHCCCEEE-EEe
Confidence 468999999997 4799999999999999987 443
No 266
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=87.84 E-value=2.4 Score=41.86 Aligned_cols=87 Identities=25% Similarity=0.352 Sum_probs=57.0
Q ss_pred HHHhCCCCCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC----------C--Ccccccccccc-----cceEEEec
Q 018214 197 LAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT----------G--GVLNKENAADV-----KAKFIIEA 259 (359)
Q Consensus 197 ~~~~g~~l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~----------~--~~I~~~na~~i-----~akiVveg 259 (359)
+...+....|.+|.|.|.|.+|..+++.+...|++++.+++.+ | ..|+......+ .+.+|+|.
T Consensus 172 l~~~~~~~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~ 251 (357)
T PLN02514 172 LSHFGLKQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDT 251 (357)
T ss_pred HHHcccCCCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEEC
Confidence 3344443478999999999999999999999999988665443 1 11222111111 35688887
Q ss_pred CCCC-CCHHHHHHHHhCCCeEeccc
Q 018214 260 ANHP-TDPEADEILSKKGVVILPDI 283 (359)
Q Consensus 260 AN~p-~t~ea~~~L~~rGI~viPD~ 283 (359)
.-.+ ..+++-+.|+..|.++.-..
T Consensus 252 ~g~~~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 252 VPVFHPLEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred CCchHHHHHHHHHhccCCEEEEECC
Confidence 6544 44567788888887666443
No 267
>PRK12862 malic enzyme; Reviewed
Probab=87.75 E-value=3.1 Score=46.01 Aligned_cols=56 Identities=25% Similarity=0.234 Sum_probs=49.3
Q ss_pred chhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHCCC---EEEeecCCC
Q 018214 183 AATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGG---KVVAVSDIT 239 (359)
Q Consensus 183 ~aTg~Gv~~~~~~~~~~~g~~l~g~~v~VqG~G~VG~~~a~~L~~~Ga---kvvavsD~~ 239 (359)
.-||-=+..++..+++..|.+++..||+|-|.|..|..+|+.|...|. +++ +.|+.
T Consensus 170 ~GTa~v~la~l~~a~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~-~~D~~ 228 (763)
T PRK12862 170 HGTAIIVAAALLNGLKLVGKDIEDVKLVASGAGAAALACLDLLVSLGVKRENIW-VTDIK 228 (763)
T ss_pred ccHHHHHHHHHHHHHHHhCCChhhcEEEEEChhHHHHHHHHHHHHcCCCcccEE-EEcCC
Confidence 457777788888899988999999999999999999999999999998 565 78875
No 268
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=87.75 E-value=1.6 Score=42.59 Aligned_cols=77 Identities=18% Similarity=0.262 Sum_probs=50.0
Q ss_pred CCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC-----------CCccccccc--ccccceEEEecCCCCCCHHHHHH
Q 018214 205 SNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT-----------GGVLNKENA--ADVKAKFIIEAANHPTDPEADEI 271 (359)
Q Consensus 205 ~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~-----------~~~I~~~na--~~i~akiVvegAN~p~t~ea~~~ 271 (359)
.|.+|.|.|.|.+|..+++.+...|++|++++... ..+|+..+. +.+..-+++.+. +.+..++-+.
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~-~~~~~~~~~~ 243 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPA-GGLVPPALEA 243 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEECCCc-HHHHHHHHHh
Confidence 58999999999999999888889999988554332 234442211 112222333332 3355677788
Q ss_pred HHhCCCeEecc
Q 018214 272 LSKKGVVILPD 282 (359)
Q Consensus 272 L~~rGI~viPD 282 (359)
|+..|.+++-.
T Consensus 244 l~~~G~~v~~G 254 (329)
T TIGR02822 244 LDRGGVLAVAG 254 (329)
T ss_pred hCCCcEEEEEe
Confidence 99989876633
No 269
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=87.68 E-value=2 Score=41.33 Aligned_cols=77 Identities=14% Similarity=0.145 Sum_probs=52.7
Q ss_pred CCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeecCCC-----------CCcccccc---ccc----c---cceEEEecCC
Q 018214 204 ISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDIT-----------GGVLNKEN---AAD----V---KAKFIIEAAN 261 (359)
Q Consensus 204 l~g~~v~VqG-~G~VG~~~a~~L~~~GakvvavsD~~-----------~~~I~~~n---a~~----i---~akiVvegAN 261 (359)
-.|.+|.|.| .|.||..+++.+...|++|++++... ..+|+..+ ..+ . ...+|++..-
T Consensus 137 ~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~~G 216 (325)
T TIGR02825 137 KGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDNVG 216 (325)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEEECCC
Confidence 3688999999 59999999999999999998665433 12233211 111 1 3568888766
Q ss_pred CCCCHHHHHHHHhCCCeEe
Q 018214 262 HPTDPEADEILSKKGVVIL 280 (359)
Q Consensus 262 ~p~t~ea~~~L~~rGI~vi 280 (359)
++...++-+.|+..|.++.
T Consensus 217 ~~~~~~~~~~l~~~G~iv~ 235 (325)
T TIGR02825 217 GEFSNTVIGQMKKFGRIAI 235 (325)
T ss_pred HHHHHHHHHHhCcCcEEEE
Confidence 5555667777888887664
No 270
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=87.64 E-value=1.5 Score=42.77 Aligned_cols=51 Identities=22% Similarity=0.135 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 185 TGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 185 Tg~Gv~~~~~~~~~~~g~~l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
-+.|...+++. .+.++++++|.|.|.|-++++++-.|.+.|++-|.|.+.+
T Consensus 110 D~~Gf~~~L~~----~~~~~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~ 160 (283)
T PRK14027 110 DVSGFGRGMEE----GLPNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLD 160 (283)
T ss_pred CHHHHHHHHHh----cCcCcCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 46677666653 3345789999999999999999999999998656587764
No 271
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=87.62 E-value=0.82 Score=43.73 Aligned_cols=34 Identities=21% Similarity=0.125 Sum_probs=28.7
Q ss_pred CCCEEEEEeccchHHHHHHHHHHCC-----------CEEEeecCCC
Q 018214 205 SNMKFAIQGFGNVGSWAAKFFHEHG-----------GKVVAVSDIT 239 (359)
Q Consensus 205 ~g~~v~VqG~G~VG~~~a~~L~~~G-----------akvvavsD~~ 239 (359)
+..+|.|.|+|-+|+++++.|.+.| .+++ +.|.|
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~-lvD~D 54 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVT-VYDDD 54 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEE-EECCC
Confidence 5789999999999999999999874 2666 77875
No 272
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=87.56 E-value=1.2 Score=43.11 Aligned_cols=71 Identities=17% Similarity=0.209 Sum_probs=45.1
Q ss_pred CEEEEEeccchHHHHHHHHHHC---CCEEEeecCCCC----Cccc----cccccc---ccceEEEecCCCCCCHHHHHHH
Q 018214 207 MKFAIQGFGNVGSWAAKFFHEH---GGKVVAVSDITG----GVLN----KENAAD---VKAKFIIEAANHPTDPEADEIL 272 (359)
Q Consensus 207 ~~v~VqG~G~VG~~~a~~L~~~---GakvvavsD~~~----~~I~----~~na~~---i~akiVvegAN~p~t~ea~~~L 272 (359)
.||.|.|||.+|..+++.|... +.++++|.|.+. .... -++.+. -++.+|+|.|--..-.|....+
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~~~~~~~l~~ll~~~~DlVVE~A~~~av~e~~~~i 82 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGRVALLDGLPGLLAWRPDLVVEAAGQQAIAEHAEGC 82 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhccCcccCCHHHHhhcCCCEEEECCCHHHHHHHHHHH
Confidence 5899999999999999988643 478999988762 1100 112222 2567899988655433333333
Q ss_pred HhCCC
Q 018214 273 SKKGV 277 (359)
Q Consensus 273 ~~rGI 277 (359)
.++|+
T Consensus 83 L~~g~ 87 (267)
T PRK13301 83 LTAGL 87 (267)
T ss_pred HhcCC
Confidence 45554
No 273
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=87.53 E-value=1.6 Score=44.80 Aligned_cols=93 Identities=23% Similarity=0.262 Sum_probs=67.3
Q ss_pred chhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHCCCE---EEeecCCCCCcccccccc----------
Q 018214 183 AATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGK---VVAVSDITGGVLNKENAA---------- 249 (359)
Q Consensus 183 ~aTg~Gv~~~~~~~~~~~g~~l~g~~v~VqG~G~VG~~~a~~L~~~Gak---vvavsD~~~~~I~~~na~---------- 249 (359)
.-||-=+..++..+++..|.+|+..+|++-|.|..|-.+++.|...|++ |+ ++|+. ++|+++--+
T Consensus 176 qGTaiv~lA~llnalk~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~-~~D~~-G~l~~~r~~~~~~~~k~~~ 253 (432)
T COG0281 176 QGTAIVTLAALLNALKLTGKKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIF-VVDRK-GLLYDGREDLTMNQKKYAK 253 (432)
T ss_pred cHHHHHHHHHHHHHHHHhCCCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEE-EEecC-CcccCCCcccccchHHHHH
Confidence 4577777888888999889999999999999999999999999999985 55 88985 444432211
Q ss_pred -------------cccceEEEecCC-CCCCHHHHHHHHhCCC
Q 018214 250 -------------DVKAKFIIEAAN-HPTDPEADEILSKKGV 277 (359)
Q Consensus 250 -------------~i~akiVvegAN-~p~t~ea~~~L~~rGI 277 (359)
..+|-+.++.+- +-+|+|.-+...++=|
T Consensus 254 a~~~~~~~~~~~~~~~adv~iG~S~~G~~t~e~V~~Ma~~Pi 295 (432)
T COG0281 254 AIEDTGERTLDLALAGADVLIGVSGVGAFTEEMVKEMAKHPI 295 (432)
T ss_pred HHhhhccccccccccCCCEEEEcCCCCCcCHHHHHHhccCCE
Confidence 013334443322 4578887777777743
No 274
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=87.48 E-value=1.2 Score=43.56 Aligned_cols=79 Identities=20% Similarity=0.227 Sum_probs=53.1
Q ss_pred CCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC-----------CCccccccc------ccc-------cc----eEE
Q 018214 205 SNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT-----------GGVLNKENA------ADV-------KA----KFI 256 (359)
Q Consensus 205 ~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~-----------~~~I~~~na------~~i-------~a----kiV 256 (359)
.|.+|+|.|.|.+|..+++.+...|++|+++.... ..+|+..+- +.+ .. .+|
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~~d~v 245 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARGLRSTGWKI 245 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhcccCCCCCCcCEE
Confidence 58999999999999999999999999988553222 123443221 111 12 267
Q ss_pred EecCCCCC-CHHHHHHHHhCCCeEeccc
Q 018214 257 IEAANHPT-DPEADEILSKKGVVILPDI 283 (359)
Q Consensus 257 vegAN~p~-t~ea~~~L~~rGI~viPD~ 283 (359)
+|...++. ...+-+.|+..|.++.=.+
T Consensus 246 ~d~~g~~~~~~~~~~~l~~~G~iv~~G~ 273 (349)
T TIGR03201 246 FECSGSKPGQESALSLLSHGGTLVVVGY 273 (349)
T ss_pred EECCCChHHHHHHHHHHhcCCeEEEECc
Confidence 88776663 4566788888887765443
No 275
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=87.44 E-value=0.93 Score=41.31 Aligned_cols=33 Identities=18% Similarity=0.267 Sum_probs=29.7
Q ss_pred CCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeec
Q 018214 204 ISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVS 236 (359)
Q Consensus 204 l~g~~v~VqG-~G~VG~~~a~~L~~~Gakvvavs 236 (359)
++++++.|.| .|.+|.++++.|.++|++|+.++
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~ 37 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADGAEVIVVD 37 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEe
Confidence 5789999999 69999999999999999998554
No 276
>PLN02712 arogenate dehydrogenase
Probab=87.36 E-value=0.85 Score=49.64 Aligned_cols=39 Identities=36% Similarity=0.490 Sum_probs=33.4
Q ss_pred hCCCCCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 200 HGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 200 ~g~~l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
++.++++++|.|.|+|++|+++|+.|.+.|.+|+++ |.+
T Consensus 363 ~~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~-dr~ 401 (667)
T PLN02712 363 CVNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAY-SRS 401 (667)
T ss_pred ccCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEE-ECC
Confidence 455688999999999999999999999999998844 443
No 277
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=87.28 E-value=1.4 Score=37.10 Aligned_cols=33 Identities=21% Similarity=0.246 Sum_probs=27.2
Q ss_pred CEEEEEe----ccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 207 MKFAIQG----FGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 207 ~~v~VqG----~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
|+++|.| -++.|..+.+.|.+.|++|+.|.-..
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~ 37 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKG 37 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTC
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCc
Confidence 5899999 58999999999999999999886544
No 278
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.27 E-value=1.9 Score=43.99 Aligned_cols=33 Identities=21% Similarity=0.341 Sum_probs=29.9
Q ss_pred CCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 206 NMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 206 g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
.-+|.|.|.|..|..+|++|++.|++|+ ++|..
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~~v~-~~D~~ 38 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGIPFA-VMDSR 38 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCCeEE-EEeCC
Confidence 4589999999999999999999999987 88975
No 279
>PRK08628 short chain dehydrogenase; Provisional
Probab=87.20 E-value=0.97 Score=41.77 Aligned_cols=35 Identities=14% Similarity=0.208 Sum_probs=30.9
Q ss_pred CCCCCCCEEEEEe-ccchHHHHHHHHHHCCCEEEee
Q 018214 201 GKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAV 235 (359)
Q Consensus 201 g~~l~g~~v~VqG-~G~VG~~~a~~L~~~Gakvvav 235 (359)
+.+++|+++.|.| .|.+|.++|+.|.++|++|+.+
T Consensus 2 ~~~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~ 37 (258)
T PRK08628 2 DLNLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIF 37 (258)
T ss_pred CCCcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEE
Confidence 3568999999999 5899999999999999999844
No 280
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=87.19 E-value=2.1 Score=43.95 Aligned_cols=60 Identities=15% Similarity=0.022 Sum_probs=43.1
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCCCCcccccccccccceEEEecCCCCCCHHHHHHHHhCCCeEecc
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPD 282 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~~~~I~~~na~~i~akiVvegAN~p~t~ea~~~L~~rGI~viPD 282 (359)
..|++|+|.|.|++|..+|+.|.+.|++|. +-..... ..++..++..+.|.++||.+.+.
T Consensus 270 ~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vt-lv~~~~~------------------~~~~~~~~~~~~l~~~GV~~~~~ 329 (449)
T TIGR01316 270 YAGKSVVVIGGGNTAVDSARTALRLGAEVH-CLYRRTR------------------EDMTARVEEIAHAEEEGVKFHFL 329 (449)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHcCCEEE-EEeecCc------------------ccCCCCHHHHHHHHhCCCEEEec
Confidence 468999999999999999999999999965 3322110 12344444456688899987643
No 281
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=87.09 E-value=1.6 Score=42.32 Aligned_cols=32 Identities=25% Similarity=0.428 Sum_probs=27.9
Q ss_pred CEEEEEeccchHHHHHHHHHHCC----CEEEeecCCC
Q 018214 207 MKFAIQGFGNVGSWAAKFFHEHG----GKVVAVSDIT 239 (359)
Q Consensus 207 ~~v~VqG~G~VG~~~a~~L~~~G----akvvavsD~~ 239 (359)
.++.+.|+||+|..++.-|.+.| ..|+ |++.+
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~-v~~~~ 37 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEII-VTNRS 37 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEE-EeCCC
Confidence 47899999999999999999999 3555 88887
No 282
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.98 E-value=0.56 Score=46.67 Aligned_cols=137 Identities=20% Similarity=0.265 Sum_probs=82.5
Q ss_pred CCCchhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHCCC-EEEeecCCC------------CCccccc
Q 018214 180 GREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGG-KVVAVSDIT------------GGVLNKE 246 (359)
Q Consensus 180 ~r~~aTg~Gv~~~~~~~~~~~g~~l~g~~v~VqG~G~VG~~~a~~L~~~Ga-kvvavsD~~------------~~~I~~~ 246 (359)
+=.-+||||.+.-+ . .. -.|.+|+|-|+|.||.++++-....|| ||||| |++ -.-||+.
T Consensus 174 gCGvsTG~GAa~~~---A---kv-~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgv-DiN~~Kf~~ak~fGaTe~iNp~ 245 (375)
T KOG0022|consen 174 GCGVSTGYGAAWNT---A---KV-EPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGV-DINPDKFEKAKEFGATEFINPK 245 (375)
T ss_pred eccccccchhhhhh---c---cc-CCCCEEEEEecchHHHHHHHhHHhcCcccEEEE-ecCHHHHHHHHhcCcceecChh
Confidence 33568999953211 1 11 369999999999999999998888997 89977 766 2335554
Q ss_pred cccc-c----------cceEEEecCCCCC-CHHHHHHHHhC-CCeEeccccccccCcchhhHhhhhccccc-----cc-C
Q 018214 247 NAAD-V----------KAKFIIEAANHPT-DPEADEILSKK-GVVILPDIYANSGGVTVSYFEWVQNIQGF-----MW-E 307 (359)
Q Consensus 247 na~~-i----------~akiVvegAN~p~-t~ea~~~L~~r-GI~viPD~laNaGGVi~s~~E~~~n~~~~-----~w-~ 307 (359)
.... + ...+=+|..-++- -.+|-..-++- |..++=.+.+.+--+-...|+.++.+.-. .| +
T Consensus 246 d~~~~i~evi~EmTdgGvDysfEc~G~~~~m~~al~s~h~GwG~sv~iGv~~~~~~i~~~p~~l~~GR~~~Gs~FGG~K~ 325 (375)
T KOG0022|consen 246 DLKKPIQEVIIEMTDGGVDYSFECIGNVSTMRAALESCHKGWGKSVVIGVAAAGQEISTRPFQLVTGRTWKGSAFGGFKS 325 (375)
T ss_pred hccccHHHHHHHHhcCCceEEEEecCCHHHHHHHHHHhhcCCCeEEEEEecCCCcccccchhhhccccEEEEEecccccc
Confidence 2222 1 3456666666553 34554545554 77777665555545555566766544310 11 3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018214 308 EEKVNHELKRYMMSAFK 324 (359)
Q Consensus 308 ~e~v~~~l~~~m~~~~~ 324 (359)
.+++-.-+++.|...++
T Consensus 326 ~~~iP~lV~~y~~~~l~ 342 (375)
T KOG0022|consen 326 KSDIPKLVKDYMKKKLN 342 (375)
T ss_pred hhhhhHHHHHHHhCccc
Confidence 44555556666654443
No 283
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.93 E-value=0.9 Score=46.59 Aligned_cols=35 Identities=23% Similarity=0.332 Sum_probs=31.8
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
+++++|.|.|+|.-|..+|++|.++|++|. ++|..
T Consensus 7 ~~~~~i~viG~G~~G~~~a~~l~~~G~~v~-~~D~~ 41 (460)
T PRK01390 7 FAGKTVAVFGLGGSGLATARALVAGGAEVI-AWDDN 41 (460)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCEEE-EECCC
Confidence 678999999999999999999999999987 78854
No 284
>PRK06138 short chain dehydrogenase; Provisional
Probab=86.81 E-value=1.1 Score=41.02 Aligned_cols=34 Identities=24% Similarity=0.434 Sum_probs=29.9
Q ss_pred CCCCCEEEEEec-cchHHHHHHHHHHCCCEEEeec
Q 018214 203 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVS 236 (359)
Q Consensus 203 ~l~g~~v~VqG~-G~VG~~~a~~L~~~Gakvvavs 236 (359)
+++++++.|.|. |.+|+++++.|.+.|++|+.++
T Consensus 2 ~~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~ 36 (252)
T PRK06138 2 RLAGRVAIVTGAGSGIGRATAKLFAREGARVVVAD 36 (252)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEec
Confidence 468999999995 9999999999999999998553
No 285
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=86.78 E-value=1 Score=42.78 Aligned_cols=34 Identities=15% Similarity=0.170 Sum_probs=30.1
Q ss_pred CCCCEEEEEecc---chHHHHHHHHHHCCCEEEeecCC
Q 018214 204 ISNMKFAIQGFG---NVGSWAAKFFHEHGGKVVAVSDI 238 (359)
Q Consensus 204 l~g~~v~VqG~G---~VG~~~a~~L~~~GakvvavsD~ 238 (359)
+++|++.|.|.+ -+|..+|+.|++.|++|+ +.+.
T Consensus 5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~-~~~r 41 (271)
T PRK06505 5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGAELA-FTYQ 41 (271)
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEE-EecC
Confidence 689999999987 699999999999999998 5554
No 286
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=86.72 E-value=2.4 Score=41.75 Aligned_cols=77 Identities=14% Similarity=0.147 Sum_probs=51.9
Q ss_pred CCCCEEEEEec-cchHHHHHHHHHHCCCEEEeecCCC------------CCccccc---cc-ccc------cceEEEecC
Q 018214 204 ISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT------------GGVLNKE---NA-ADV------KAKFIIEAA 260 (359)
Q Consensus 204 l~g~~v~VqG~-G~VG~~~a~~L~~~GakvvavsD~~------------~~~I~~~---na-~~i------~akiVvegA 260 (359)
-.|.+|.|.|. |.||..+++.+...|++|++++... ..+|+.. +. +.+ ...+|++..
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~v~d~v 236 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYFDNV 236 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEEEEECC
Confidence 36899999998 9999999999999999998664332 1123221 11 111 356777776
Q ss_pred CCCCCHHHHHHHHhCCCeEe
Q 018214 261 NHPTDPEADEILSKKGVVIL 280 (359)
Q Consensus 261 N~p~t~ea~~~L~~rGI~vi 280 (359)
.++...++-+.|+..|.+++
T Consensus 237 G~~~~~~~~~~l~~~G~iv~ 256 (348)
T PLN03154 237 GGDMLDAALLNMKIHGRIAV 256 (348)
T ss_pred CHHHHHHHHHHhccCCEEEE
Confidence 65555666677777776654
No 287
>PRK06841 short chain dehydrogenase; Provisional
Probab=86.71 E-value=1.1 Score=41.21 Aligned_cols=33 Identities=21% Similarity=0.407 Sum_probs=29.8
Q ss_pred CCCCCEEEEEe-ccchHHHHHHHHHHCCCEEEee
Q 018214 203 SISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAV 235 (359)
Q Consensus 203 ~l~g~~v~VqG-~G~VG~~~a~~L~~~Gakvvav 235 (359)
+++++++.|.| .|.+|.++|+.|.+.|++|+.+
T Consensus 12 ~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~ 45 (255)
T PRK06841 12 DLSGKVAVVTGGASGIGHAIAELFAAKGARVALL 45 (255)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence 47899999999 5999999999999999999844
No 288
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=86.69 E-value=2 Score=35.05 Aligned_cols=32 Identities=28% Similarity=0.363 Sum_probs=27.8
Q ss_pred EEEEEeccchHHHHHHHHHHC--CCEEEeecCCC
Q 018214 208 KFAIQGFGNVGSWAAKFFHEH--GGKVVAVSDIT 239 (359)
Q Consensus 208 ~v~VqG~G~VG~~~a~~L~~~--GakvvavsD~~ 239 (359)
+|.|.|+|+.|..-...+.+. +.++++|+|.+
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~ 35 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPD 35 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSS
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCC
Confidence 789999999999988777655 78999999996
No 289
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=86.61 E-value=1 Score=36.69 Aligned_cols=30 Identities=37% Similarity=0.494 Sum_probs=24.6
Q ss_pred EEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 209 FAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 209 v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
|+|.|+|.+|..+++.|.+.+.+|+ +-|.+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vv-vid~d 30 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVV-VIDRD 30 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEE-EEESS
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEE-EEECC
Confidence 6899999999999999999777888 55654
No 290
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=86.53 E-value=1.1 Score=43.94 Aligned_cols=37 Identities=27% Similarity=0.549 Sum_probs=32.5
Q ss_pred CCCCCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeecC
Q 018214 201 GKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSD 237 (359)
Q Consensus 201 g~~l~g~~v~VqG-~G~VG~~~a~~L~~~GakvvavsD 237 (359)
|.+.++++|.|.| .|-+|+++++.|.+.|++|+++.+
T Consensus 5 ~~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r 42 (353)
T PLN02896 5 GRESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLR 42 (353)
T ss_pred ccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 4567899999999 699999999999999999996644
No 291
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=86.50 E-value=8 Score=38.15 Aligned_cols=80 Identities=15% Similarity=0.206 Sum_probs=53.1
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCC-EEEeecCCC-----------CCccccccc-----ccc------cceEEEecC
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGG-KVVAVSDIT-----------GGVLNKENA-----ADV------KAKFIIEAA 260 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~Ga-kvvavsD~~-----------~~~I~~~na-----~~i------~akiVvegA 260 (359)
-.|.+|.|.|.|.+|..+++.+...|+ +|++++..+ ..+|+.... +.+ .+.+|+|..
T Consensus 185 ~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~ 264 (368)
T cd08300 185 EPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGATDCVNPKDHDKPIQQVLVEMTDGGVDYTFECI 264 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCEEEcccccchHHHHHHHHHhCCCCcEEEECC
Confidence 368999999999999999999999999 687553322 123432211 111 467888887
Q ss_pred CCC-CCHHHHHHHHhC-CCeEeccc
Q 018214 261 NHP-TDPEADEILSKK-GVVILPDI 283 (359)
Q Consensus 261 N~p-~t~ea~~~L~~r-GI~viPD~ 283 (359)
.++ ...++-+.|+.. |.++.-..
T Consensus 265 g~~~~~~~a~~~l~~~~G~~v~~g~ 289 (368)
T cd08300 265 GNVKVMRAALEACHKGWGTSVIIGV 289 (368)
T ss_pred CChHHHHHHHHhhccCCCeEEEEcc
Confidence 765 445666777664 76665443
No 292
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=86.40 E-value=3 Score=46.53 Aligned_cols=83 Identities=19% Similarity=0.253 Sum_probs=51.7
Q ss_pred CCCCEEEEEeccchHHHHHHHHHH--------CC--CEEEeecCCCCCcccccccc---------c-------------c
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHE--------HG--GKVVAVSDITGGVLNKENAA---------D-------------V 251 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~--------~G--akvvavsD~~~~~I~~~na~---------~-------------i 251 (359)
-+..+++|.|||+||+.+++.|.+ .| .+|++|+|+++..+++...+ . +
T Consensus 456 ~~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~e~i 535 (810)
T PRK09466 456 EKRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLVGVVDSRRSLLNYDGLDASRALAFFDDEAVEWDEESLFLWL 535 (810)
T ss_pred CceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeCCccccCccCCCHHHHHhhHHhhcCCccHHHHHHHH
Confidence 355678999999999999988754 24 56799998874433321110 0 0
Q ss_pred ---cc--eEEEecCCCCCCHHHHHHHHhCCCeEeccccccccC
Q 018214 252 ---KA--KFIIEAANHPTDPEADEILSKKGVVILPDIYANSGG 289 (359)
Q Consensus 252 ---~a--kiVvegAN~p~t~ea~~~L~~rGI~viPD~laNaGG 289 (359)
.+ .+|+|..++--.......+.++|+.|+- +|...
T Consensus 536 ~~~~~~~~vvVd~t~~~~~~~~~~~aL~~G~~VVt---aNK~~ 575 (810)
T PRK09466 536 RAHPYDELVVLDVTASEQLALQYPDFASHGFHVIS---ANKLA 575 (810)
T ss_pred hhcCCCCcEEEECCCChHHHHHHHHHHHcCCEEEc---CCccc
Confidence 11 4888888654211222345678988763 66654
No 293
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=86.40 E-value=1.2 Score=41.77 Aligned_cols=36 Identities=14% Similarity=0.289 Sum_probs=31.0
Q ss_pred CCCCCEEEEEecc---chHHHHHHHHHHCCCEEEeecCCC
Q 018214 203 SISNMKFAIQGFG---NVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 203 ~l~g~~v~VqG~G---~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
+++||+++|.|.+ -+|..+|+.|++.|++|+ +.+.+
T Consensus 7 ~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~-l~~r~ 45 (258)
T PRK07533 7 PLAGKRGLVVGIANEQSIAWGCARAFRALGAELA-VTYLN 45 (258)
T ss_pred ccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEE-EEeCC
Confidence 4789999999975 699999999999999987 55654
No 294
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.38 E-value=1.5 Score=43.86 Aligned_cols=85 Identities=21% Similarity=0.286 Sum_probs=63.3
Q ss_pred CCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCCCCcccccccccccceEEEecCCCCCCHHHHHHHHhCCCe-Eeccc
Q 018214 205 SNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVV-ILPDI 283 (359)
Q Consensus 205 ~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~~~~I~~~na~~i~akiVvegAN~p~t~ea~~~L~~rGI~-viPD~ 283 (359)
.|.+|.|-|.|++|..+..-+...||+=|-++|...+-| +-|.++.|+.+.--++.. +++.-..+-++++- -.||+
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rl--e~Ak~~Ga~~~~~~~~~~-~~~~~~~~v~~~~g~~~~d~ 245 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRL--ELAKKFGATVTDPSSHKS-SPQELAELVEKALGKKQPDV 245 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHH--HHHHHhCCeEEeeccccc-cHHHHHHHHHhhccccCCCe
Confidence 689999999999999988888889984444888865544 678889999999888888 54443344444433 44999
Q ss_pred cccccCcch
Q 018214 284 YANSGGVTV 292 (359)
Q Consensus 284 laNaGGVi~ 292 (359)
..+.-|+-.
T Consensus 246 ~~dCsG~~~ 254 (354)
T KOG0024|consen 246 TFDCSGAEV 254 (354)
T ss_pred EEEccCchH
Confidence 888766644
No 295
>PRK06701 short chain dehydrogenase; Provisional
Probab=86.37 E-value=3 Score=39.90 Aligned_cols=33 Identities=21% Similarity=0.341 Sum_probs=29.2
Q ss_pred CCCCCEEEEEe-ccchHHHHHHHHHHCCCEEEee
Q 018214 203 SISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAV 235 (359)
Q Consensus 203 ~l~g~~v~VqG-~G~VG~~~a~~L~~~Gakvvav 235 (359)
.++++++.|.| .|-+|.++++.|.++|++|+.+
T Consensus 43 ~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~ 76 (290)
T PRK06701 43 KLKGKVALITGGDSGIGRAVAVLFAKEGADIAIV 76 (290)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence 47899999999 5889999999999999998833
No 296
>PRK06179 short chain dehydrogenase; Provisional
Probab=86.37 E-value=1.5 Score=40.84 Aligned_cols=32 Identities=19% Similarity=0.231 Sum_probs=27.5
Q ss_pred CCCEEEEEe-ccchHHHHHHHHHHCCCEEEeec
Q 018214 205 SNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVS 236 (359)
Q Consensus 205 ~g~~v~VqG-~G~VG~~~a~~L~~~Gakvvavs 236 (359)
+++++.|.| .|.+|+++++.|++.|++|++++
T Consensus 3 ~~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~ 35 (270)
T PRK06179 3 NSKVALVTGASSGIGRATAEKLARAGYRVFGTS 35 (270)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 457889988 59999999999999999998553
No 297
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=86.34 E-value=1.3 Score=44.20 Aligned_cols=86 Identities=27% Similarity=0.403 Sum_probs=59.9
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC-----------CCcc-----ccccccc-------ccceEEEecC
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT-----------GGVL-----NKENAAD-------VKAKFIIEAA 260 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~-----------~~~I-----~~~na~~-------i~akiVvegA 260 (359)
....+|+|.|.|-||.++|+...-.||+|. |-|.+ ++-| |+.|... +-.-+.+.||
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~glgA~Vt-ild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpga 244 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIGLGADVT-ILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGA 244 (371)
T ss_pred CCCccEEEECCccccchHHHHHhccCCeeE-EEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCC
Confidence 556789999999999999999999999997 77776 1111 2222222 2334566788
Q ss_pred CCC--CCHHHHHHHHhCCCeEeccccccccCcch
Q 018214 261 NHP--TDPEADEILSKKGVVILPDIYANSGGVTV 292 (359)
Q Consensus 261 N~p--~t~ea~~~L~~rGI~viPD~laNaGGVi~ 292 (359)
-.| +|.|.-+.++ +| -++=|+.+-.||.+-
T Consensus 245 kaPkLvt~e~vk~Mk-pG-sVivDVAiDqGGc~E 276 (371)
T COG0686 245 KAPKLVTREMVKQMK-PG-SVIVDVAIDQGGCFE 276 (371)
T ss_pred CCceehhHHHHHhcC-CC-cEEEEEEEcCCCcee
Confidence 888 5666555553 44 456689999999853
No 298
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.31 E-value=2.7 Score=42.93 Aligned_cols=31 Identities=35% Similarity=0.474 Sum_probs=28.6
Q ss_pred EEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 208 KFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 208 ~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
+|.|.|.|..|..+|++|.+.|++|. ++|..
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~-~~D~~ 32 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVV-VSDRN 32 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEE-EECCC
Confidence 68999999999999999999999987 88875
No 299
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=86.27 E-value=1.3 Score=40.51 Aligned_cols=35 Identities=29% Similarity=0.373 Sum_probs=29.9
Q ss_pred CCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeecCC
Q 018214 204 ISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDI 238 (359)
Q Consensus 204 l~g~~v~VqG-~G~VG~~~a~~L~~~GakvvavsD~ 238 (359)
++++++.|.| .|.+|+++|+.|.++|++|+.+.+.
T Consensus 1 ~~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~ 36 (246)
T PRK12938 1 MSQRIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGP 36 (246)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCC
Confidence 4689999999 5999999999999999999865543
No 300
>PLN02688 pyrroline-5-carboxylate reductase
Probab=86.27 E-value=2.5 Score=39.88 Aligned_cols=31 Identities=16% Similarity=0.263 Sum_probs=26.9
Q ss_pred EEEEEeccchHHHHHHHHHHCCC----EEEeec-CCC
Q 018214 208 KFAIQGFGNVGSWAAKFFHEHGG----KVVAVS-DIT 239 (359)
Q Consensus 208 ~v~VqG~G~VG~~~a~~L~~~Ga----kvvavs-D~~ 239 (359)
+|.+.|+|++|+.+++.|.+.|. +|+ ++ |.+
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~-v~~~r~ 37 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVASGVVPPSRIS-TADDSN 37 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCCcceEE-EEeCCC
Confidence 68999999999999999999997 776 55 665
No 301
>PRK07060 short chain dehydrogenase; Provisional
Probab=86.15 E-value=1.3 Score=40.40 Aligned_cols=34 Identities=24% Similarity=0.335 Sum_probs=30.1
Q ss_pred CCCCCCEEEEEec-cchHHHHHHHHHHCCCEEEee
Q 018214 202 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAV 235 (359)
Q Consensus 202 ~~l~g~~v~VqG~-G~VG~~~a~~L~~~Gakvvav 235 (359)
.+++++++.|.|. |.+|.++++.|.+.|++|+.+
T Consensus 5 ~~~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~ 39 (245)
T PRK07060 5 FDFSGKSVLVTGASSGIGRACAVALAQRGARVVAA 39 (245)
T ss_pred cccCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEE
Confidence 3478899999997 899999999999999999844
No 302
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.14 E-value=3.5 Score=41.93 Aligned_cols=35 Identities=29% Similarity=0.347 Sum_probs=31.7
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
+.++++.|.|+|.-|..++++|.+.|++|+ ++|.+
T Consensus 4 ~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~-~~D~~ 38 (438)
T PRK03806 4 YQGKKVVIIGLGLTGLSCVDFFLARGVTPR-VIDTR 38 (438)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCCeEE-EEcCC
Confidence 467899999999999999999999999987 78875
No 303
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=86.12 E-value=2.2 Score=41.66 Aligned_cols=74 Identities=19% Similarity=0.289 Sum_probs=51.3
Q ss_pred CEEEEEeccchHHHHHHHHH-HCCCEEEeecCCCCC------------cccccccccc----cceEEEecCCCCCCHHHH
Q 018214 207 MKFAIQGFGNVGSWAAKFFH-EHGGKVVAVSDITGG------------VLNKENAADV----KAKFIIEAANHPTDPEAD 269 (359)
Q Consensus 207 ~~v~VqG~G~VG~~~a~~L~-~~GakvvavsD~~~~------------~I~~~na~~i----~akiVvegAN~p~t~ea~ 269 (359)
.+|+|.|.|++|...+..+. ..+..+++|+|.+.. ....++.+.+ ...+|......+...+..
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~e~a 81 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHARHA 81 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHHHHH
Confidence 47999999999997765554 568999999997621 1111122221 345688877777777777
Q ss_pred HHHHhCCCeEe
Q 018214 270 EILSKKGVVIL 280 (359)
Q Consensus 270 ~~L~~rGI~vi 280 (359)
..+.+.|+.++
T Consensus 82 ~~al~aGk~VI 92 (285)
T TIGR03215 82 RLLAELGKIVI 92 (285)
T ss_pred HHHHHcCCEEE
Confidence 78888998773
No 304
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=86.09 E-value=8.1 Score=37.14 Aligned_cols=28 Identities=32% Similarity=0.386 Sum_probs=24.1
Q ss_pred EEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 211 IQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 211 VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
|.|+|++|..+|+.|.+.|.+|+ +.|.+
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~-v~dr~ 28 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVR-VFDLF 28 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEE-EEeCC
Confidence 46999999999999999999887 66765
No 305
>PRK08339 short chain dehydrogenase; Provisional
Probab=86.02 E-value=1.3 Score=41.62 Aligned_cols=37 Identities=14% Similarity=0.124 Sum_probs=31.5
Q ss_pred CCCCCCEEEEEec-cchHHHHHHHHHHCCCEEEeecCCC
Q 018214 202 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 202 ~~l~g~~v~VqG~-G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
.+++||++.|.|. |.+|.++|+.|++.|++|+ +.+.+
T Consensus 4 ~~l~~k~~lItGas~gIG~aia~~l~~~G~~V~-~~~r~ 41 (263)
T PRK08339 4 IDLSGKLAFTTASSKGIGFGVARVLARAGADVI-LLSRN 41 (263)
T ss_pred cCCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEE-EEeCC
Confidence 3578999999996 7899999999999999998 55554
No 306
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=85.92 E-value=1.2 Score=40.93 Aligned_cols=34 Identities=18% Similarity=0.273 Sum_probs=29.9
Q ss_pred CCCCEEEEEec-cchHHHHHHHHHHCCCEEEeecCC
Q 018214 204 ISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 238 (359)
Q Consensus 204 l~g~~v~VqG~-G~VG~~~a~~L~~~GakvvavsD~ 238 (359)
++++++.|.|. |.+|+++++.|.++|++|+.+ +.
T Consensus 5 ~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~-~r 39 (262)
T PRK13394 5 LNGKTAVVTGAASGIGKEIALELARAGAAVAIA-DL 39 (262)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCeEEEE-eC
Confidence 67899999996 999999999999999999844 44
No 307
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=85.91 E-value=1.2 Score=41.50 Aligned_cols=34 Identities=18% Similarity=0.313 Sum_probs=29.8
Q ss_pred CCCCEEEEEecc---chHHHHHHHHHHCCCEEEeecCC
Q 018214 204 ISNMKFAIQGFG---NVGSWAAKFFHEHGGKVVAVSDI 238 (359)
Q Consensus 204 l~g~~v~VqG~G---~VG~~~a~~L~~~GakvvavsD~ 238 (359)
++||+++|.|.+ .+|..+|+.|++.|++|+ +.+.
T Consensus 5 l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi-~~~r 41 (252)
T PRK06079 5 LSGKKIVVMGVANKRSIAWGCAQAIKDQGATVI-YTYQ 41 (252)
T ss_pred cCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEE-EecC
Confidence 689999999975 799999999999999998 4444
No 308
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=85.87 E-value=1.2 Score=40.53 Aligned_cols=35 Identities=20% Similarity=0.422 Sum_probs=30.7
Q ss_pred CCCCEEEEEec-cchHHHHHHHHHHCCCEEEeecCCC
Q 018214 204 ISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 204 l~g~~v~VqG~-G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
++++++.|.|. |.+|..+++.|.+.|++|+ +.|.+
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi-~~~r~ 38 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGAKLA-LIDLN 38 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEE-EEeCC
Confidence 67899999997 9999999999999999988 44554
No 309
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=85.85 E-value=1.8 Score=43.29 Aligned_cols=37 Identities=24% Similarity=0.373 Sum_probs=30.6
Q ss_pred CCCCCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCC
Q 018214 201 GKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI 238 (359)
Q Consensus 201 g~~l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~ 238 (359)
|.++.||||-|.|+|.+|+.+|+.|...| ..+.-+..
T Consensus 157 g~~~~gK~vgilG~G~IG~~ia~rL~~Fg-~~i~y~~r 193 (336)
T KOG0069|consen 157 GYDLEGKTVGILGLGRIGKAIAKRLKPFG-CVILYHSR 193 (336)
T ss_pred cccccCCEEEEecCcHHHHHHHHhhhhcc-ceeeeecc
Confidence 45689999999999999999999999999 54424433
No 310
>PRK07774 short chain dehydrogenase; Provisional
Probab=85.80 E-value=1.3 Score=40.58 Aligned_cols=35 Identities=26% Similarity=0.408 Sum_probs=30.3
Q ss_pred CCCCEEEEEec-cchHHHHHHHHHHCCCEEEeecCCC
Q 018214 204 ISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 204 l~g~~v~VqG~-G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
++++++.|.|. |-+|.++++.|.+.|++|+.+ +.+
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~-~r~ 39 (250)
T PRK07774 4 FDDKVAIVTGAAGGIGQAYAEALAREGASVVVA-DIN 39 (250)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE-eCC
Confidence 67899999995 999999999999999999944 443
No 311
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=85.79 E-value=2.1 Score=41.65 Aligned_cols=80 Identities=26% Similarity=0.304 Sum_probs=54.8
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC------------CCcccccc--cccc-------cce-EEEecCC
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT------------GGVLNKEN--AADV-------KAK-FIIEAAN 261 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~------------~~~I~~~n--a~~i-------~ak-iVvegAN 261 (359)
..|.+|.|+|.|.+|..+++.+...|+++|.+.+.+ ..+++.++ .+.+ ... +|+|..-
T Consensus 159 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v~d~~G 238 (347)
T PRK10309 159 CEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQLILETAG 238 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCceEecCcccCHHHHHHHhcCCCCCeEEEECCC
Confidence 468999999999999999999999999843243433 12233221 1111 234 8888887
Q ss_pred CC-CCHHHHHHHHhCCCeEeccc
Q 018214 262 HP-TDPEADEILSKKGVVILPDI 283 (359)
Q Consensus 262 ~p-~t~ea~~~L~~rGI~viPD~ 283 (359)
++ ...++-+.|+..|.+++-.+
T Consensus 239 ~~~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 239 VPQTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred CHHHHHHHHHHhhcCCEEEEEcc
Confidence 66 55778899999998776543
No 312
>PRK06057 short chain dehydrogenase; Provisional
Probab=85.70 E-value=1.3 Score=41.10 Aligned_cols=34 Identities=26% Similarity=0.320 Sum_probs=30.2
Q ss_pred CCCCEEEEEec-cchHHHHHHHHHHCCCEEEeecCC
Q 018214 204 ISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 238 (359)
Q Consensus 204 l~g~~v~VqG~-G~VG~~~a~~L~~~GakvvavsD~ 238 (359)
++|++|.|.|. |.+|.++++.|.++|++|+.+ |.
T Consensus 5 ~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~-~r 39 (255)
T PRK06057 5 LAGRVAVITGGGSGIGLATARRLAAEGATVVVG-DI 39 (255)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEE-eC
Confidence 78999999996 999999999999999999844 44
No 313
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=85.67 E-value=1.3 Score=41.49 Aligned_cols=35 Identities=20% Similarity=0.359 Sum_probs=30.2
Q ss_pred CCCCCEEEEEec---cchHHHHHHHHHHCCCEEEeecCC
Q 018214 203 SISNMKFAIQGF---GNVGSWAAKFFHEHGGKVVAVSDI 238 (359)
Q Consensus 203 ~l~g~~v~VqG~---G~VG~~~a~~L~~~GakvvavsD~ 238 (359)
+++||+++|.|. +.+|.++|+.|++.|++|+ +.+.
T Consensus 4 ~~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~-~~~r 41 (257)
T PRK08594 4 SLEGKTYVVMGVANKRSIAWGIARSLHNAGAKLV-FTYA 41 (257)
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEE-EecC
Confidence 468999999997 4899999999999999998 4443
No 314
>PRK06523 short chain dehydrogenase; Provisional
Probab=85.65 E-value=1.3 Score=40.88 Aligned_cols=34 Identities=18% Similarity=0.309 Sum_probs=30.2
Q ss_pred CCCCCCEEEEEe-ccchHHHHHHHHHHCCCEEEee
Q 018214 202 KSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAV 235 (359)
Q Consensus 202 ~~l~g~~v~VqG-~G~VG~~~a~~L~~~Gakvvav 235 (359)
.+++|+++.|.| .|.+|+++++.|.+.|++|+.+
T Consensus 5 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~ 39 (260)
T PRK06523 5 LELAGKRALVTGGTKGIGAATVARLLEAGARVVTT 39 (260)
T ss_pred cCCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEE
Confidence 357899999999 5899999999999999999854
No 315
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=85.65 E-value=3.4 Score=40.06 Aligned_cols=78 Identities=13% Similarity=0.106 Sum_probs=52.9
Q ss_pred CCCCEEEEEec-cchHHHHHHHHHHCCCEEEeecCCC------------CCcccc-c--c-cccc------cceEEEecC
Q 018214 204 ISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT------------GGVLNK-E--N-AADV------KAKFIIEAA 260 (359)
Q Consensus 204 l~g~~v~VqG~-G~VG~~~a~~L~~~GakvvavsD~~------------~~~I~~-~--n-a~~i------~akiVvegA 260 (359)
-.|.+|.|.|. |.||..+++.+..+|++|++++... ..+|+. + + .+.+ .+.+|++..
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~v~d~~ 229 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDIYFDNV 229 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEEEEECC
Confidence 36899999997 9999999999999999998655432 122331 1 1 1111 356777766
Q ss_pred CCCCCHHHHHHHHhCCCeEec
Q 018214 261 NHPTDPEADEILSKKGVVILP 281 (359)
Q Consensus 261 N~p~t~ea~~~L~~rGI~viP 281 (359)
-+....++-+.|...|.++.-
T Consensus 230 g~~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 230 GGKMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred CHHHHHHHHHHhccCcEEEEe
Confidence 555556677778888876643
No 316
>PRK05867 short chain dehydrogenase; Provisional
Probab=85.64 E-value=1.4 Score=40.83 Aligned_cols=36 Identities=19% Similarity=0.320 Sum_probs=30.9
Q ss_pred CCCCCEEEEEec-cchHHHHHHHHHHCCCEEEeecCCC
Q 018214 203 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 203 ~l~g~~v~VqG~-G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
+++|+++.|.|. |.+|.++++.|.+.|++|+ +.+.+
T Consensus 6 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~-~~~r~ 42 (253)
T PRK05867 6 DLHGKRALITGASTGIGKRVALAYVEAGAQVA-IAARH 42 (253)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEE-EEcCC
Confidence 468999999996 8999999999999999998 44543
No 317
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=85.55 E-value=3.5 Score=41.03 Aligned_cols=79 Identities=29% Similarity=0.383 Sum_probs=54.0
Q ss_pred CCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC-----------CCc--ccc-c-c-cc---c----ccceEEEecCC
Q 018214 205 SNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT-----------GGV--LNK-E-N-AA---D----VKAKFIIEAAN 261 (359)
Q Consensus 205 ~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~-----------~~~--I~~-~-n-a~---~----i~akiVvegAN 261 (359)
.+.+|+|.|.|++|.-++..+.-.|+..|-+.|.+ +.. ++. + + .. . ..+.+++|.+=
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G 247 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG 247 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC
Confidence 33399999999999999888888997655577887 111 121 1 1 11 1 25788888887
Q ss_pred CCC-CHHHHHHHHhCCCeEeccc
Q 018214 262 HPT-DPEADEILSKKGVVILPDI 283 (359)
Q Consensus 262 ~p~-t~ea~~~L~~rGI~viPD~ 283 (359)
.+. -..+-+.++..|.+++-.+
T Consensus 248 ~~~~~~~ai~~~r~gG~v~~vGv 270 (350)
T COG1063 248 SPPALDQALEALRPGGTVVVVGV 270 (350)
T ss_pred CHHHHHHHHHHhcCCCEEEEEec
Confidence 552 3467788889998876544
No 318
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=85.51 E-value=2.6 Score=42.80 Aligned_cols=31 Identities=39% Similarity=0.757 Sum_probs=28.2
Q ss_pred EEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 208 KFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 208 ~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
++.|.|+|..|..+|++|++.|++|. +||..
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~-~sD~~ 31 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVT-VTDLK 31 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEE-EEeCC
Confidence 47899999999999999999999988 89975
No 319
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=85.44 E-value=6.1 Score=39.04 Aligned_cols=77 Identities=27% Similarity=0.352 Sum_probs=53.8
Q ss_pred CCCEEEEEeccchHHHHHHHHHHCCC-EEEeecCCC----------C--Ccccccc---cccc------cceEEEecCCC
Q 018214 205 SNMKFAIQGFGNVGSWAAKFFHEHGG-KVVAVSDIT----------G--GVLNKEN---AADV------KAKFIIEAANH 262 (359)
Q Consensus 205 ~g~~v~VqG~G~VG~~~a~~L~~~Ga-kvvavsD~~----------~--~~I~~~n---a~~i------~akiVvegAN~ 262 (359)
.|.+|+|.|.|.+|..++..+...|+ +|+++ |.+ | .+|+..+ .+++ .+.+|+|..-.
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~-~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~G~ 269 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAV-DLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMAGS 269 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEE-cCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECCCC
Confidence 58899999999999999999899999 57744 443 1 2333221 1111 36789998865
Q ss_pred C-CCHHHHHHHHhCCCeEecc
Q 018214 263 P-TDPEADEILSKKGVVILPD 282 (359)
Q Consensus 263 p-~t~ea~~~L~~rGI~viPD 282 (359)
+ ....+-+.|+..|-++.-.
T Consensus 270 ~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 270 VPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred hHHHHHHHHHHhcCCEEEEEc
Confidence 5 4566778888888776544
No 320
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=85.30 E-value=1.1 Score=47.52 Aligned_cols=34 Identities=24% Similarity=0.258 Sum_probs=30.7
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCC
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI 238 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~ 238 (359)
..|++|+|.|.|..|..+|..|.+.|++|+ |.|.
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~-v~e~ 168 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVT-IFEA 168 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEE-EEec
Confidence 468999999999999999999999999987 6664
No 321
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=85.27 E-value=3 Score=41.62 Aligned_cols=72 Identities=28% Similarity=0.371 Sum_probs=49.2
Q ss_pred EEEEEeccchHHHHHHHHHHC---CCEEEeecCCC-------------------------CC---ccccc-cc-------
Q 018214 208 KFAIQGFGNVGSWAAKFFHEH---GGKVVAVSDIT-------------------------GG---VLNKE-NA------- 248 (359)
Q Consensus 208 ~v~VqG~G~VG~~~a~~L~~~---GakvvavsD~~-------------------------~~---~I~~~-na------- 248 (359)
||.|-|||.+|+.+.|.+.+. ..+||+|-|.. ++ .++.+ .+
T Consensus 1 ~i~INGfGRIGr~~~r~~~~~~~~~~~ivaind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~~l~i~g~~~i~v~~~~d 80 (327)
T TIGR01534 1 KVGINGFGRIGRLVLRAILEKQGLDLEVVAINDLTDLEYLAYLLKYDSVHGRFEGEVTADEDKGLVVNGKFVIVVASERD 80 (327)
T ss_pred CEEEEccChHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHhcccCCCCCCCCcEEecCCceEEECCeEEEEEEecCC
Confidence 589999999999999998765 58999998854 22 11222 11
Q ss_pred -c-----cccceEEEecCCCCCCHHHHHHHHhCCCeE
Q 018214 249 -A-----DVKAKFIIEAANHPTDPEADEILSKKGVVI 279 (359)
Q Consensus 249 -~-----~i~akiVvegAN~p~t~ea~~~L~~rGI~v 279 (359)
. .+++.+|+|.+-..+|.+....-.+.|...
T Consensus 81 p~~~~w~~~gvDiVle~tG~~~s~~~a~~hl~~Gak~ 117 (327)
T TIGR01534 81 PSDLPWKALGVDIVIECTGKFRDKEKLEGHLEAGAKK 117 (327)
T ss_pred cccCchhhcCCCEEEEccchhhcHHHHHHHhhCCCEE
Confidence 1 125778999888887776555555667543
No 322
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=85.25 E-value=2 Score=42.59 Aligned_cols=43 Identities=21% Similarity=0.320 Sum_probs=34.1
Q ss_pred HHHhCCCCCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 197 LAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 197 ~~~~g~~l~g~~v~VqG-~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
|.+.|..-.|.||+|.+ .|.||+-+-+.-.-+|++||+++-..
T Consensus 142 Ll~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaGg~ 185 (340)
T COG2130 142 LLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGGA 185 (340)
T ss_pred HHHhcCCCCCCEEEEEecccccchHHHHHHHhhCCeEEEecCCH
Confidence 33456666799999999 59999887766567899999998655
No 323
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=85.25 E-value=4.9 Score=40.10 Aligned_cols=34 Identities=26% Similarity=0.429 Sum_probs=30.2
Q ss_pred CCEEEEEeccchHHHHHHHHHHC-CCEEEeecCCC
Q 018214 206 NMKFAIQGFGNVGSWAAKFFHEH-GGKVVAVSDIT 239 (359)
Q Consensus 206 g~~v~VqG~G~VG~~~a~~L~~~-GakvvavsD~~ 239 (359)
..||+|.|+|++|...++.+.+. +..+++|.|.+
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~ 37 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRR 37 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCC
Confidence 36899999999999999999765 89999999886
No 324
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=85.24 E-value=4.2 Score=37.00 Aligned_cols=34 Identities=24% Similarity=0.365 Sum_probs=29.7
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCCEEEeecC
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSD 237 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD 237 (359)
..|.+|.|.|.|.+|..+++.+...|++|++++.
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~ 166 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDR 166 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcC
Confidence 4788999999999999999999999999986643
No 325
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=85.13 E-value=1.5 Score=39.98 Aligned_cols=35 Identities=23% Similarity=0.357 Sum_probs=30.0
Q ss_pred CCCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeecCC
Q 018214 203 SISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDI 238 (359)
Q Consensus 203 ~l~g~~v~VqG-~G~VG~~~a~~L~~~GakvvavsD~ 238 (359)
+++++++.|.| .|.+|.++++.|.+.|++|+.+ +.
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~-~r 37 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVVVT-DR 37 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEE-eC
Confidence 36789999999 5999999999999999998844 44
No 326
>PRK06949 short chain dehydrogenase; Provisional
Probab=85.12 E-value=1.5 Score=40.34 Aligned_cols=34 Identities=21% Similarity=0.310 Sum_probs=30.1
Q ss_pred CCCCCCEEEEEec-cchHHHHHHHHHHCCCEEEee
Q 018214 202 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAV 235 (359)
Q Consensus 202 ~~l~g~~v~VqG~-G~VG~~~a~~L~~~Gakvvav 235 (359)
.+++++++.|.|. |.+|+++++.|.+.|++|+.+
T Consensus 5 ~~~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~ 39 (258)
T PRK06949 5 INLEGKVALVTGASSGLGARFAQVLAQAGAKVVLA 39 (258)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEE
Confidence 3478999999995 999999999999999998844
No 327
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=85.10 E-value=3.5 Score=35.08 Aligned_cols=61 Identities=13% Similarity=0.222 Sum_probs=50.6
Q ss_pred CCCCchhHHHHHHHHHHHHH-HhCCCCCCCEEEEEe--------ccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 179 LGREAATGLGVFFATEALLA-EHGKSISNMKFAIQG--------FGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 179 ~~r~~aTg~Gv~~~~~~~~~-~~g~~l~g~~v~VqG--------~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
.|+...|.|....+.+.+.+ ....+++...|.|.| .|.-...+.+.|.+.|.+|+-|.|..
T Consensus 38 kg~kk~TpyAAq~aa~~~~~~~~~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~~I~DvT 107 (114)
T TIGR03628 38 ADRDESSPYAAMQAAGRAAEKAKERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGRIEDVT 107 (114)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEEEEEEcC
Confidence 46778899998888888877 334567889999999 67877888899999999999888874
No 328
>PLN02778 3,5-epimerase/4-reductase
Probab=85.09 E-value=7.7 Score=37.43 Aligned_cols=29 Identities=31% Similarity=0.494 Sum_probs=26.1
Q ss_pred CCCEEEEEe-ccchHHHHHHHHHHCCCEEE
Q 018214 205 SNMKFAIQG-FGNVGSWAAKFFHEHGGKVV 233 (359)
Q Consensus 205 ~g~~v~VqG-~G~VG~~~a~~L~~~Gakvv 233 (359)
..++|.|.| .|-+|+++++.|.++|.+|+
T Consensus 8 ~~~kiLVtG~tGfiG~~l~~~L~~~g~~V~ 37 (298)
T PLN02778 8 ATLKFLIYGKTGWIGGLLGKLCQEQGIDFH 37 (298)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCCCEEE
Confidence 457899999 69999999999999999986
No 329
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=84.96 E-value=1.3 Score=43.24 Aligned_cols=34 Identities=29% Similarity=0.249 Sum_probs=29.6
Q ss_pred CCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 205 SNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 205 ~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
++++|.|.|.|++|..+|+.|.+.|..|. +.|.+
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~-~~~r~ 36 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVR-VWSRR 36 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEE-EEeCC
Confidence 46789999999999999999999999987 55544
No 330
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.93 E-value=3.6 Score=42.04 Aligned_cols=35 Identities=20% Similarity=0.196 Sum_probs=29.5
Q ss_pred CCC-CEEEEEeccchHHHHHHHHHHC--CCEEEeecCCC
Q 018214 204 ISN-MKFAIQGFGNVGSWAAKFFHEH--GGKVVAVSDIT 239 (359)
Q Consensus 204 l~g-~~v~VqG~G~VG~~~a~~L~~~--GakvvavsD~~ 239 (359)
+++ ++|.|.|+|..|.+++++|.+. |++|. ++|..
T Consensus 4 ~~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~-~~D~~ 41 (438)
T PRK04663 4 WQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVK-VIDTR 41 (438)
T ss_pred ccCCceEEEEeccHHHHHHHHHHHhcCCCCeEE-EEeCC
Confidence 456 7899999999999999999877 47776 89974
No 331
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=84.88 E-value=3.7 Score=35.82 Aligned_cols=61 Identities=16% Similarity=0.243 Sum_probs=50.7
Q ss_pred CCCCchhHHHHHHHHHHHHH-HhCCCCCCCEEEEEe--------ccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 179 LGREAATGLGVFFATEALLA-EHGKSISNMKFAIQG--------FGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 179 ~~r~~aTg~Gv~~~~~~~~~-~~g~~l~g~~v~VqG--------~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
.|+...|-|....+.+.+.+ ....+++...|.|.| .|.-...+.+.|.+.|.+|+-|.|..
T Consensus 45 kg~kK~TpyAAq~aae~~~~~~~~~Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~~I~DvT 114 (132)
T PRK09607 45 ADRDESSPYAAMQAAEKAAEDAKEKGITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGRIEDVT 114 (132)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEEEEEEcC
Confidence 46778899998888888877 334568889999999 67877888899999999999898875
No 332
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=84.81 E-value=1.3 Score=46.64 Aligned_cols=66 Identities=23% Similarity=0.275 Sum_probs=49.3
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC---CCcccccc-----cccccceEEEecCCCCCCHHHHH
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT---GGVLNKEN-----AADVKAKFIIEAANHPTDPEADE 270 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~---~~~I~~~n-----a~~i~akiVvegAN~p~t~ea~~ 270 (359)
.+.++|+|.|.|--|..+|+.|++.|.+|+ |=+.. |+=|.... .-.++|.++-+--|+|+..-..+
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~-VLEARdRvGGRI~t~~~~~~~~vd~Gas~~~g~~~npl~~l~~q 86 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVL-VLEARDRVGGRIYTFKSEGGDHVDLGASVLTGVYNNPLALLSKQ 86 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceE-EEeccCCcCceeEEEecCCCCeeecCCceecCcCccHHHHHHHH
Confidence 456899999999999999999999999988 66655 33333221 23457888888888887655544
No 333
>PRK05876 short chain dehydrogenase; Provisional
Probab=84.76 E-value=1.4 Score=41.79 Aligned_cols=35 Identities=23% Similarity=0.392 Sum_probs=31.0
Q ss_pred CCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 204 ISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 204 l~g~~v~VqG-~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
++++++.|.| .|.+|+++|+.|.+.|++|+ ++|.+
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~~Vv-~~~r~ 39 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGARVV-LGDVD 39 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEE-EEeCC
Confidence 6899999998 68999999999999999988 66654
No 334
>PLN02256 arogenate dehydrogenase
Probab=84.76 E-value=2.1 Score=42.10 Aligned_cols=35 Identities=40% Similarity=0.628 Sum_probs=30.2
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCC
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI 238 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~ 238 (359)
.+++++.|.|+|.+|+.+++.|.+.|.+|+++...
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~ 68 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRS 68 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECc
Confidence 47789999999999999999999999998855433
No 335
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]
Probab=84.60 E-value=4.4 Score=36.89 Aligned_cols=84 Identities=19% Similarity=0.220 Sum_probs=59.9
Q ss_pred CCCCEEEEEeccchHHHHHHHHHH---CCCEEEeecCCC---------------------------------------CC
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHE---HGGKVVAVSDIT---------------------------------------GG 241 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~---~GakvvavsD~~---------------------------------------~~ 241 (359)
++| +|.+.|+|..|.-+|.-|.| -|.+=|-+.|-. ..
T Consensus 17 PrG-eV~l~G~GRLG~Rval~Lle~HRGGperi~v~Dgqrve~dDiihrr~Ga~~GEyKv~Fi~rl~~~~f~r~V~a~pE 95 (217)
T COG4015 17 PRG-EVSLIGCGRLGVRVALDLLEVHRGGPERIYVFDGQRVEEDDIIHRRLGAKVGEYKVDFIKRLGRVHFGRRVEAFPE 95 (217)
T ss_pred CCc-eEEEEeccchhHHHHHHHHHHhcCCCeEEEEecCcccCchhhHHHHhCCCcchhHHHHHHHhCcCCCCceeecccc
Confidence 555 68999999999999877753 454433366644 34
Q ss_pred cccccccccccceE----EEecCCCCCCHHHHHHHHhCCCeEeccccccccCcchh
Q 018214 242 VLNKENAADVKAKF----IIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVS 293 (359)
Q Consensus 242 ~I~~~na~~i~aki----VvegAN~p~t~ea~~~L~~rGI~viPD~laNaGGVi~s 293 (359)
-||++|++.++-.+ |++|--.|+|.+-...-++||+.-+ ..+||..-
T Consensus 96 ~it~dNlhll~gDVvvi~IAGGdT~PvTaaii~ya~~rG~~Ti-----sT~GVFGi 146 (217)
T COG4015 96 NITKDNLHLLKGDVVVICIAGGDTIPVTAAIINYAKERGIKTI-----STNGVFGI 146 (217)
T ss_pred cccccchhhhcCCEEEEEecCCCcchhHHHHHHHHHHcCceEe-----ecCceeec
Confidence 58999999887544 4566677788888888999999643 55677543
No 336
>PLN02730 enoyl-[acyl-carrier-protein] reductase
Probab=84.58 E-value=1.4 Score=43.11 Aligned_cols=34 Identities=18% Similarity=0.223 Sum_probs=30.4
Q ss_pred CCCCCCCEEEEEec---cchHHHHHHHHHHCCCEEEe
Q 018214 201 GKSISNMKFAIQGF---GNVGSWAAKFFHEHGGKVVA 234 (359)
Q Consensus 201 g~~l~g~~v~VqG~---G~VG~~~a~~L~~~Gakvva 234 (359)
+.+++||++.|.|. .-+|..+|+.|++.|++||.
T Consensus 4 ~~~l~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~ 40 (303)
T PLN02730 4 PIDLRGKRAFIAGVADDNGYGWAIAKALAAAGAEILV 40 (303)
T ss_pred CcCCCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEE
Confidence 34589999999999 66999999999999999984
No 337
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=84.56 E-value=1.4 Score=40.46 Aligned_cols=34 Identities=21% Similarity=0.340 Sum_probs=29.9
Q ss_pred CCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeecCC
Q 018214 204 ISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDI 238 (359)
Q Consensus 204 l~g~~v~VqG-~G~VG~~~a~~L~~~GakvvavsD~ 238 (359)
+++++|.|.| .|.+|.++++.|.+.|++|+.+ |.
T Consensus 10 ~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~-~r 44 (247)
T PRK08945 10 LKDRIILVTGAGDGIGREAALTYARHGATVILL-GR 44 (247)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEE-eC
Confidence 6899999998 6899999999999999999844 44
No 338
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=84.54 E-value=3.4 Score=39.37 Aligned_cols=78 Identities=15% Similarity=0.201 Sum_probs=53.1
Q ss_pred CCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeecCCC-----------CCcccccc---cccc------cceEEEecCCC
Q 018214 204 ISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDIT-----------GGVLNKEN---AADV------KAKFIIEAANH 262 (359)
Q Consensus 204 l~g~~v~VqG-~G~VG~~~a~~L~~~GakvvavsD~~-----------~~~I~~~n---a~~i------~akiVvegAN~ 262 (359)
-.|.+|.|.| .|.||..+++.+...|++|++++.+. ..+++..+ .+++ ...+|.+...+
T Consensus 142 ~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~~~~gvd~vld~~g~ 221 (329)
T cd08294 142 KAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKELGFDAVFNYKTVSLEEALKEAAPDGIDCYFDNVGG 221 (329)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHCCCCcEEEEECCCH
Confidence 3689999999 69999999999999999998766443 11232211 1111 25677776665
Q ss_pred CCCHHHHHHHHhCCCeEec
Q 018214 263 PTDPEADEILSKKGVVILP 281 (359)
Q Consensus 263 p~t~ea~~~L~~rGI~viP 281 (359)
+...++-+.|+..|.++.-
T Consensus 222 ~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 222 EFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred HHHHHHHHhhccCCEEEEE
Confidence 5556667778888876654
No 339
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=84.50 E-value=3.4 Score=38.41 Aligned_cols=35 Identities=14% Similarity=0.232 Sum_probs=30.1
Q ss_pred CCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeecCC
Q 018214 204 ISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDI 238 (359)
Q Consensus 204 l~g~~v~VqG-~G~VG~~~a~~L~~~GakvvavsD~ 238 (359)
.+|.+|.|.| .|.+|..+++.+...|++|+++++.
T Consensus 135 ~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~ 170 (320)
T cd05286 135 KPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSS 170 (320)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCC
Confidence 4689999999 6999999999999999999866543
No 340
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=84.46 E-value=3.7 Score=39.58 Aligned_cols=36 Identities=19% Similarity=0.307 Sum_probs=30.9
Q ss_pred CCCCCEEEEEec-cchHHHHHHHHHHCCCEEEeecCCC
Q 018214 203 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 203 ~l~g~~v~VqG~-G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
.++|+.+.|.|. --+|.++|+.|.++|++|+ +++.+
T Consensus 5 ~l~gkvalVTG~s~GIG~aia~~la~~Ga~v~-i~~r~ 41 (270)
T KOG0725|consen 5 RLAGKVALVTGGSSGIGKAIALLLAKAGAKVV-ITGRS 41 (270)
T ss_pred cCCCcEEEEECCCChHHHHHHHHHHHCCCEEE-EEeCC
Confidence 478999999995 4578999999999999999 77765
No 341
>PRK07890 short chain dehydrogenase; Provisional
Probab=84.44 E-value=1.5 Score=40.27 Aligned_cols=35 Identities=20% Similarity=0.178 Sum_probs=30.1
Q ss_pred CCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 204 ISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 204 l~g~~v~VqG-~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
++++++.|.| .|.+|+++|+.|.+.|++|+ +.+.+
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~-~~~r~ 38 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVV-LAART 38 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCCEEE-EEeCC
Confidence 5789999999 58999999999999999998 44543
No 342
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=84.43 E-value=4.7 Score=40.37 Aligned_cols=73 Identities=23% Similarity=0.323 Sum_probs=51.1
Q ss_pred CEEEEEeccchHHHHHHHHHHC-CCEEEeecCCC---------------------------------CCccccc---ccc
Q 018214 207 MKFAIQGFGNVGSWAAKFFHEH-GGKVVAVSDIT---------------------------------GGVLNKE---NAA 249 (359)
Q Consensus 207 ~~v~VqG~G~VG~~~a~~L~~~-GakvvavsD~~---------------------------------~~~I~~~---na~ 249 (359)
.+|.|.|||.+|+.+.+.+.+. ..+++++-|.. +..|.-. +..
T Consensus 3 ikigInG~GRiGr~v~r~~~~~~~~~ivaind~~~~~~~~a~ll~yDs~~g~~~~~v~~~g~~l~~~g~~i~v~~~~~~~ 82 (334)
T PRK08955 3 IKVGINGFGRIGRLALRAAWDWPELEFVQINDPAGDAATLAHLLEFDSVHGRWHHEVTAEGDAIVINGKRIRTTQNKAIA 82 (334)
T ss_pred eEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCEEEcCCEEEECCEEEEEEecCChh
Confidence 4799999999999999997754 58999998832 1111111 111
Q ss_pred cc---cceEEEecCCCCCCHHHHHHHHhCCCeE
Q 018214 250 DV---KAKFIIEAANHPTDPEADEILSKKGVVI 279 (359)
Q Consensus 250 ~i---~akiVvegAN~p~t~ea~~~L~~rGI~v 279 (359)
.+ ++.+|+|.+...+|.+......+.|...
T Consensus 83 ~~~w~gvDiVle~tG~~~s~~~a~~hl~aGak~ 115 (334)
T PRK08955 83 DTDWSGCDVVIEASGVMKTKALLQAYLDQGVKR 115 (334)
T ss_pred hCCccCCCEEEEccchhhcHHHHHHHHHCCCEE
Confidence 11 6889999999888877666666677543
No 343
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=84.40 E-value=2.4 Score=43.32 Aligned_cols=35 Identities=26% Similarity=0.311 Sum_probs=31.0
Q ss_pred CCCCCCEEEEEec-----------------cchHHHHHHHHHHCCCEEEeec
Q 018214 202 KSISNMKFAIQGF-----------------GNVGSWAAKFFHEHGGKVVAVS 236 (359)
Q Consensus 202 ~~l~g~~v~VqG~-----------------G~VG~~~a~~L~~~Gakvvavs 236 (359)
.+++|++|.|.|- |.+|.++|+.|.+.|++|+.++
T Consensus 184 ~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~ 235 (399)
T PRK05579 184 KDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVS 235 (399)
T ss_pred cccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeC
Confidence 4689999999986 8899999999999999998553
No 344
>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]
Probab=84.39 E-value=2 Score=42.16 Aligned_cols=47 Identities=30% Similarity=0.393 Sum_probs=38.7
Q ss_pred HHHHHHHHhCCC-----CCCCEEEEEeccchHHHHHHHHHHCCC-EEEeecCCC
Q 018214 192 ATEALLAEHGKS-----ISNMKFAIQGFGNVGSWAAKFFHEHGG-KVVAVSDIT 239 (359)
Q Consensus 192 ~~~~~~~~~g~~-----l~g~~v~VqG~G~VG~~~a~~L~~~Ga-kvvavsD~~ 239 (359)
+=.-+|+++|+- ++.+.|+|.|.|-||+-+|+.|.+.|. |++ ..|.|
T Consensus 63 SRLMALqRMgIV~dYErIR~~aVAiVGvGGVGSV~AeMLTRCGIGkLl-LfDYD 115 (422)
T KOG2336|consen 63 SRLMALQRMGIVDDYERIREFAVAIVGVGGVGSVTAEMLTRCGIGKLL-LFDYD 115 (422)
T ss_pred HHHHHHHHhcchhhHHHHhhheeEEEecCchhHHHHHHHHhcCcceEE-Eeecc
Confidence 334466777752 789999999999999999999999995 777 78876
No 345
>PRK07831 short chain dehydrogenase; Provisional
Probab=84.34 E-value=1.6 Score=40.63 Aligned_cols=35 Identities=31% Similarity=0.470 Sum_probs=30.0
Q ss_pred CCCCEEEEEec-c-chHHHHHHHHHHCCCEEEeecCCC
Q 018214 204 ISNMKFAIQGF-G-NVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 204 l~g~~v~VqG~-G-~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
++++++.|.|. | .+|+.+++.|.++|++|+ +.|.+
T Consensus 15 ~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~-~~~~~ 51 (262)
T PRK07831 15 LAGKVVLVTAAAGTGIGSATARRALEEGARVV-ISDIH 51 (262)
T ss_pred cCCCEEEEECCCcccHHHHHHHHHHHcCCEEE-EEeCC
Confidence 57899999996 6 699999999999999988 55554
No 346
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=84.28 E-value=11 Score=36.77 Aligned_cols=31 Identities=32% Similarity=0.408 Sum_probs=27.2
Q ss_pred CEEEEEe-ccchHHHHHHHHHHCCCEEEeecC
Q 018214 207 MKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSD 237 (359)
Q Consensus 207 ~~v~VqG-~G~VG~~~a~~L~~~GakvvavsD 237 (359)
++|.|.| .|-+|+++++.|.+.|++|+++..
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r 32 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGYEVHGLIR 32 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCCEEEEEec
Confidence 5789999 599999999999999999997643
No 347
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=84.26 E-value=20 Score=37.24 Aligned_cols=153 Identities=16% Similarity=0.122 Sum_probs=86.9
Q ss_pred HHHHHHHhhcCCCCCcCCC-----CCCCChhhHHHHHHHhhhhhC---CCC------ccccCcccccCCC-CCCCchhHH
Q 018214 123 VFTQKIHDLIGIHRDVPAP-----DMGTNSQTMAWILDEYSKFHG---HSP------AVVTGKPIDLGGS-LGREAATGL 187 (359)
Q Consensus 123 ~~~~~l~~~iG~~~di~ap-----Dvgt~~~~m~~i~d~~~~~~g---~~~------~~~tGkp~~~GG~-~~r~~aTg~ 187 (359)
+|-.++..+.|...++..+ .-|-+-+|-+.+...|..+-. ... .-....|+..+|. ...-+.-+.
T Consensus 143 SFE~A~~~LGg~~i~l~~~~~ss~~kGESi~DTarvLs~y~D~IviR~~~~~~~~e~A~~s~vPVINAgdg~~~HPtQaL 222 (429)
T PRK11891 143 SFGAAFCRLGGSVCDTTGFTFSSMAKGESIYDTSRVMSGYVDALVIRHPEQGSVAEFARATNLPVINGGDGPGEHPSQAL 222 (429)
T ss_pred HHHHHHHHcCCeEEEeCCccccCCCCCCCHHHHHHHHHHhCCEEEEeCCchhHHHHHHHhCCCCEEECCCCCCCCcHHHH
Confidence 7888888888876555322 234456677777777753211 111 1235688887775 333444455
Q ss_pred HHHHHHHHHHHHhCCCCCCCEEEEEec---cchHHHHHHHHHHC-CCEEEeecCCCCCcccccccccccceEEEecCCCC
Q 018214 188 GVFFATEALLAEHGKSISNMKFAIQGF---GNVGSWAAKFFHEH-GGKVVAVSDITGGVLNKENAADVKAKFIIEAANHP 263 (359)
Q Consensus 188 Gv~~~~~~~~~~~g~~l~g~~v~VqG~---G~VG~~~a~~L~~~-GakvvavsD~~~~~I~~~na~~i~akiVvegAN~p 263 (359)
.=++++++.+-.+|..++|++|++.|- ++|....+..|... |++|+ ++-+.+-.+.++-.+.++. -|.+--
T Consensus 223 aDl~Ti~E~~g~~g~~l~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~-l~~P~~~~~~~~~~~~~~~----~G~~v~ 297 (429)
T PRK11891 223 LDLYTIQREFSRLGKIVDGAHIALVGDLKYGRTVHSLVKLLALYRGLKFT-LVSPPTLEMPAYIVEQISR----NGHVIE 297 (429)
T ss_pred HHHHHHHHHhCccCCCcCCCEEEEECcCCCChHHHHHHHHHHHhcCCEEE-EECCCccccCHHHHHHHHh----cCCeEE
Confidence 545555543211233489999999997 58998888888776 99998 4444344333333222221 022222
Q ss_pred CCHHHHHHHHhCCCeEe
Q 018214 264 TDPEADEILSKKGVVIL 280 (359)
Q Consensus 264 ~t~ea~~~L~~rGI~vi 280 (359)
++.+-++.++...|+|.
T Consensus 298 ~~~d~~eav~~ADVVYt 314 (429)
T PRK11891 298 QTDDLAAGLRGADVVYA 314 (429)
T ss_pred EEcCHHHHhCCCCEEEE
Confidence 34444555655555554
No 348
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=84.24 E-value=1.6 Score=39.62 Aligned_cols=32 Identities=28% Similarity=0.342 Sum_probs=28.9
Q ss_pred CCCCEEEEEec-cchHHHHHHHHHHCCCEEEee
Q 018214 204 ISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAV 235 (359)
Q Consensus 204 l~g~~v~VqG~-G~VG~~~a~~L~~~Gakvvav 235 (359)
+++++|.|.|. |.+|.++++.|.+.|++|+.+
T Consensus 3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~ 35 (238)
T PRK05786 3 LKGKKVAIIGVSEGLGYAVAYFALKEGAQVCIN 35 (238)
T ss_pred cCCcEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 67899999995 889999999999999999855
No 349
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=84.22 E-value=1.7 Score=40.31 Aligned_cols=35 Identities=14% Similarity=0.232 Sum_probs=30.2
Q ss_pred CCCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeecCC
Q 018214 203 SISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDI 238 (359)
Q Consensus 203 ~l~g~~v~VqG-~G~VG~~~a~~L~~~GakvvavsD~ 238 (359)
+++++++.|.| .|.+|.++++.|.+.|++|+ +.+.
T Consensus 12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~-~~~~ 47 (258)
T PRK06935 12 SLDGKVAIVTGGNTGLGQGYAVALAKAGADII-ITTH 47 (258)
T ss_pred cCCCCEEEEeCCCchHHHHHHHHHHHCCCEEE-EEeC
Confidence 47899999999 48999999999999999998 4444
No 350
>PLN02240 UDP-glucose 4-epimerase
Probab=84.14 E-value=1.7 Score=42.26 Aligned_cols=34 Identities=26% Similarity=0.313 Sum_probs=30.2
Q ss_pred CCCCCEEEEEec-cchHHHHHHHHHHCCCEEEeec
Q 018214 203 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVS 236 (359)
Q Consensus 203 ~l~g~~v~VqG~-G~VG~~~a~~L~~~Gakvvavs 236 (359)
.+++++|.|.|. |.+|+++++.|.+.|++|++++
T Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~ 36 (352)
T PLN02240 2 SLMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVID 36 (352)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 467899999985 9999999999999999999764
No 351
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=84.14 E-value=1.5 Score=41.38 Aligned_cols=34 Identities=15% Similarity=0.312 Sum_probs=29.9
Q ss_pred CCCCEEEEEecc---chHHHHHHHHHHCCCEEEeecCC
Q 018214 204 ISNMKFAIQGFG---NVGSWAAKFFHEHGGKVVAVSDI 238 (359)
Q Consensus 204 l~g~~v~VqG~G---~VG~~~a~~L~~~GakvvavsD~ 238 (359)
++|++++|.|.+ .+|.++|+.|++.|++|+ +.+.
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vi-l~~r 40 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELA-FTYQ 40 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEE-EEec
Confidence 689999999986 599999999999999998 5554
No 352
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=84.08 E-value=1.7 Score=39.90 Aligned_cols=32 Identities=22% Similarity=0.258 Sum_probs=28.7
Q ss_pred CCCCEEEEEe-ccchHHHHHHHHHHCCCEEEee
Q 018214 204 ISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAV 235 (359)
Q Consensus 204 l~g~~v~VqG-~G~VG~~~a~~L~~~Gakvvav 235 (359)
+++++|.|.| .|.+|.++++.|.+.|++|+.+
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~ 34 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGAKVVIA 34 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEE
Confidence 4678999999 6999999999999999999854
No 353
>PRK07024 short chain dehydrogenase; Provisional
Probab=84.01 E-value=2.2 Score=39.65 Aligned_cols=81 Identities=17% Similarity=0.335 Sum_probs=46.8
Q ss_pred CCEEEEEe-ccchHHHHHHHHHHCCCEEEeecCCCCCcccccccccc----cceEE-EecCCCC-CCHHHHHHHHhCCCe
Q 018214 206 NMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDITGGVLNKENAADV----KAKFI-IEAANHP-TDPEADEILSKKGVV 278 (359)
Q Consensus 206 g~~v~VqG-~G~VG~~~a~~L~~~GakvvavsD~~~~~I~~~na~~i----~akiV-vegAN~p-~t~ea~~~L~~rGI~ 278 (359)
.++|.|.| .|-+|.++++.|.+.|++|+ +.|.+...+.+ ....+ ++.++ ++-.|.. +....++++.+.|-
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~~v~-~~~r~~~~~~~-~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~- 78 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGATLG-LVARRTDALQA-FAARLPKAARVSVYAADVRDADALAAAAADFIAAHGL- 78 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCEEE-EEeCCHHHHHH-HHHhcccCCeeEEEEcCCCCHHHHHHHHHHHHHhCCC-
Confidence 46899998 68999999999999999998 55554211110 11111 22222 2222211 11112344555563
Q ss_pred EeccccccccCcc
Q 018214 279 ILPDIYANSGGVT 291 (359)
Q Consensus 279 viPD~laNaGGVi 291 (359)
||++.|..|+.
T Consensus 79 --id~lv~~ag~~ 89 (257)
T PRK07024 79 --PDVVIANAGIS 89 (257)
T ss_pred --CCEEEECCCcC
Confidence 69999988874
No 354
>PRK09072 short chain dehydrogenase; Provisional
Probab=84.00 E-value=1.8 Score=40.23 Aligned_cols=33 Identities=18% Similarity=0.423 Sum_probs=29.2
Q ss_pred CCCCCEEEEEe-ccchHHHHHHHHHHCCCEEEee
Q 018214 203 SISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAV 235 (359)
Q Consensus 203 ~l~g~~v~VqG-~G~VG~~~a~~L~~~Gakvvav 235 (359)
+++++++.|.| .|-+|..+++.|.+.|++|+.+
T Consensus 2 ~~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~ 35 (263)
T PRK09072 2 DLKDKRVLLTGASGGIGQALAEALAAAGARLLLV 35 (263)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 46789999999 5999999999999999999844
No 355
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=83.97 E-value=1.6 Score=40.97 Aligned_cols=34 Identities=18% Similarity=0.231 Sum_probs=29.4
Q ss_pred CCCCEEEEEecc---chHHHHHHHHHHCCCEEEeecCC
Q 018214 204 ISNMKFAIQGFG---NVGSWAAKFFHEHGGKVVAVSDI 238 (359)
Q Consensus 204 l~g~~v~VqG~G---~VG~~~a~~L~~~GakvvavsD~ 238 (359)
++||++.|.|.+ -+|.++|+.|++.|++|+ +.+.
T Consensus 6 ~~~k~~lITGas~~~GIG~a~a~~la~~G~~v~-~~~r 42 (260)
T PRK06603 6 LQGKKGLITGIANNMSISWAIAQLAKKHGAELW-FTYQ 42 (260)
T ss_pred cCCcEEEEECCCCCcchHHHHHHHHHHcCCEEE-EEeC
Confidence 688999999986 399999999999999998 4454
No 356
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=83.93 E-value=1.7 Score=40.19 Aligned_cols=35 Identities=20% Similarity=0.264 Sum_probs=30.4
Q ss_pred CCCCEEEEEec-cchHHHHHHHHHHCCCEEEeecCCC
Q 018214 204 ISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 204 l~g~~v~VqG~-G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
++++++.|.|. |-+|.++++.|.+.|++|+ +.|.+
T Consensus 6 ~~~k~vlVtGas~gIG~~la~~l~~~G~~v~-~~~r~ 41 (260)
T PRK12823 6 FAGKVVVVTGAAQGIGRGVALRAAAEGARVV-LVDRS 41 (260)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEE-EEeCc
Confidence 78899999995 8899999999999999998 55553
No 357
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=83.85 E-value=1.8 Score=39.85 Aligned_cols=36 Identities=19% Similarity=0.237 Sum_probs=31.0
Q ss_pred CCCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 203 SISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 203 ~l~g~~v~VqG-~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
+++++++.|.| .|.+|+.+++.|.+.|++|+ +.+.+
T Consensus 8 ~~~~k~ilItGas~~IG~~la~~l~~~G~~v~-~~~r~ 44 (256)
T PRK06124 8 SLAGQVALVTGSARGLGFEIARALAGAGAHVL-VNGRN 44 (256)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHcCCeEE-EEeCC
Confidence 47899999999 58999999999999999998 44553
No 358
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=83.82 E-value=1.9 Score=40.12 Aligned_cols=37 Identities=14% Similarity=0.187 Sum_probs=31.5
Q ss_pred CCCCCCEEEEEec-cchHHHHHHHHHHCCCEEEeecCC
Q 018214 202 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 238 (359)
Q Consensus 202 ~~l~g~~v~VqG~-G~VG~~~a~~L~~~GakvvavsD~ 238 (359)
.++++|++.|.|. +.+|.++|+.|.+.|++|+.+++.
T Consensus 4 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~ 41 (260)
T PRK08416 4 NEMKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNS 41 (260)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence 3478999999995 889999999999999999855444
No 359
>PRK06184 hypothetical protein; Provisional
Probab=83.76 E-value=2.7 Score=43.59 Aligned_cols=58 Identities=17% Similarity=0.216 Sum_probs=41.5
Q ss_pred CCEEEEEeccchHHHHHHHHHHCCCEEEeecCCCCCcccccccccccceEEEecCCCCCCHHHHHHHHhCCC
Q 018214 206 NMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGV 277 (359)
Q Consensus 206 g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~~~~I~~~na~~i~akiVvegAN~p~t~ea~~~L~~rGI 277 (359)
...|+|.|.|.+|..+|..|.++|.+|+ |-|.....-.. -++ ..++|.+-++|++-|+
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~-viE~~~~~~~~-----~ra--------~~l~~~~~e~l~~lGl 60 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFR-LIEKAPEPFPG-----SRG--------KGIQPRTQEVFDDLGV 60 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEE-EEeCCCCCCcC-----ccc--------eeecHHHHHHHHHcCc
Confidence 3579999999999999999999999987 66664221110 111 1245778888888886
No 360
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=83.74 E-value=2.1 Score=38.66 Aligned_cols=35 Identities=20% Similarity=0.218 Sum_probs=29.8
Q ss_pred CCCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeecC
Q 018214 203 SISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSD 237 (359)
Q Consensus 203 ~l~g~~v~VqG-~G~VG~~~a~~L~~~GakvvavsD 237 (359)
.++++++.|.| .|.+|.++++.|.+.|++|+.++.
T Consensus 2 ~~~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~ 37 (248)
T PRK05557 2 SLEGKVALVTGASRGIGRAIAERLAAQGANVVINYA 37 (248)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 45788999999 599999999999999999964544
No 361
>PRK06194 hypothetical protein; Provisional
Probab=83.71 E-value=1.7 Score=40.88 Aligned_cols=35 Identities=23% Similarity=0.244 Sum_probs=30.0
Q ss_pred CCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 204 ISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 204 l~g~~v~VqG-~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
++++++.|.| .|.+|+++++.|.+.|++|+ +.|.+
T Consensus 4 ~~~k~vlVtGasggIG~~la~~l~~~G~~V~-~~~r~ 39 (287)
T PRK06194 4 FAGKVAVITGAASGFGLAFARIGAALGMKLV-LADVQ 39 (287)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCCEEE-EEeCC
Confidence 5789999999 58999999999999999998 44553
No 362
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=83.70 E-value=2.6 Score=40.60 Aligned_cols=55 Identities=24% Similarity=0.250 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHC----CC------EEEeecCCC
Q 018214 185 TGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEH----GG------KVVAVSDIT 239 (359)
Q Consensus 185 Tg~Gv~~~~~~~~~~~g~~l~g~~v~VqG~G~VG~~~a~~L~~~----Ga------kvvavsD~~ 239 (359)
||-=+..++..+++..|.+|+..||++.|.|..|-.+|+.|.+. |. +=+-+.|++
T Consensus 4 TaaV~lAgll~Al~~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~ 68 (255)
T PF03949_consen 4 TAAVVLAGLLNALRVTGKKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSK 68 (255)
T ss_dssp HHHHHHHHHHHHHHHHTS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETT
T ss_pred hHHHHHHHHHHHHHHhCCCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEecc
Confidence 55556677788888889999999999999999999999998877 88 333377876
No 363
>PLN02740 Alcohol dehydrogenase-like
Probab=83.68 E-value=4.4 Score=40.34 Aligned_cols=77 Identities=22% Similarity=0.258 Sum_probs=51.9
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCC-EEEeecCCC-----------CCcccccc-----cccc------cceEEEecC
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGG-KVVAVSDIT-----------GGVLNKEN-----AADV------KAKFIIEAA 260 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~Ga-kvvavsD~~-----------~~~I~~~n-----a~~i------~akiVvegA 260 (359)
-.|.+|.|.|.|.+|..+++.+...|+ +|+++...+ ..+|+... .+.+ .+.+|+|..
T Consensus 197 ~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvvid~~ 276 (381)
T PLN02740 197 QAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGITDFINPKDSDKPVHERIREMTGGGVDYSFECA 276 (381)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECC
Confidence 368999999999999999999999999 577543222 12343221 1111 367899888
Q ss_pred CCC-CCHHHHHHHHhC-CCeEe
Q 018214 261 NHP-TDPEADEILSKK-GVVIL 280 (359)
Q Consensus 261 N~p-~t~ea~~~L~~r-GI~vi 280 (359)
-.+ ...++-+.++.. |.+++
T Consensus 277 G~~~~~~~a~~~~~~g~G~~v~ 298 (381)
T PLN02740 277 GNVEVLREAFLSTHDGWGLTVL 298 (381)
T ss_pred CChHHHHHHHHhhhcCCCEEEE
Confidence 766 445666777664 76655
No 364
>PRK06172 short chain dehydrogenase; Provisional
Probab=83.65 E-value=1.8 Score=39.92 Aligned_cols=36 Identities=28% Similarity=0.352 Sum_probs=30.7
Q ss_pred CCCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 203 SISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 203 ~l~g~~v~VqG-~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
.++++++.|.| .|.+|.++++.|.+.|++|+.+ +.+
T Consensus 4 ~l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~-~r~ 40 (253)
T PRK06172 4 TFSGKVALVTGGAAGIGRATALAFAREGAKVVVA-DRD 40 (253)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEE-eCC
Confidence 46889999999 5899999999999999999844 443
No 365
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=83.64 E-value=1.4 Score=42.37 Aligned_cols=32 Identities=25% Similarity=0.418 Sum_probs=29.0
Q ss_pred CEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 207 ~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
++|+|.|.|.+|..+|..|+..|..|+ +.|.+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~-l~d~~ 35 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVT-IVDVS 35 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEE-EEeCC
Confidence 579999999999999999999999988 66776
No 366
>PRK09620 hypothetical protein; Provisional
Probab=83.60 E-value=1.8 Score=40.88 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=28.9
Q ss_pred CCCCEEEEEec-----------------cchHHHHHHHHHHCCCEEEeecC
Q 018214 204 ISNMKFAIQGF-----------------GNVGSWAAKFFHEHGGKVVAVSD 237 (359)
Q Consensus 204 l~g~~v~VqG~-----------------G~VG~~~a~~L~~~GakvvavsD 237 (359)
++|++|.|.+- |.+|+++|+.|.++|++|+.++.
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g 51 (229)
T PRK09620 1 MKGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHG 51 (229)
T ss_pred CCCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeC
Confidence 46888888853 89999999999999999986653
No 367
>PRK09186 flagellin modification protein A; Provisional
Probab=83.57 E-value=1.8 Score=39.79 Aligned_cols=32 Identities=34% Similarity=0.457 Sum_probs=28.7
Q ss_pred CCCCEEEEEec-cchHHHHHHHHHHCCCEEEee
Q 018214 204 ISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAV 235 (359)
Q Consensus 204 l~g~~v~VqG~-G~VG~~~a~~L~~~Gakvvav 235 (359)
+++++|.|.|. |.+|.++|+.|.+.|++|+.+
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~ 34 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAA 34 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 47899999995 899999999999999999854
No 368
>PRK08703 short chain dehydrogenase; Provisional
Probab=83.50 E-value=2 Score=39.23 Aligned_cols=35 Identities=23% Similarity=0.377 Sum_probs=30.2
Q ss_pred CCCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeecCC
Q 018214 203 SISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDI 238 (359)
Q Consensus 203 ~l~g~~v~VqG-~G~VG~~~a~~L~~~GakvvavsD~ 238 (359)
+++++++.|.| .|.+|.++++.|.+.|++|+.+ +.
T Consensus 3 ~l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~-~r 38 (239)
T PRK08703 3 TLSDKTILVTGASQGLGEQVAKAYAAAGATVILV-AR 38 (239)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEE-eC
Confidence 46889999999 5999999999999999999844 44
No 369
>PRK06398 aldose dehydrogenase; Validated
Probab=83.31 E-value=1.9 Score=40.24 Aligned_cols=33 Identities=15% Similarity=0.308 Sum_probs=29.4
Q ss_pred CCCCCEEEEEe-ccchHHHHHHHHHHCCCEEEee
Q 018214 203 SISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAV 235 (359)
Q Consensus 203 ~l~g~~v~VqG-~G~VG~~~a~~L~~~Gakvvav 235 (359)
+++|+++.|.| .|-+|.++|+.|.+.|++|+.+
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~ 36 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINF 36 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEE
Confidence 47899999999 5789999999999999999844
No 370
>PRK07454 short chain dehydrogenase; Provisional
Probab=83.29 E-value=2.3 Score=38.87 Aligned_cols=34 Identities=21% Similarity=0.182 Sum_probs=28.6
Q ss_pred CCCEEEEEe-ccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 205 SNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 205 ~g~~v~VqG-~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
+.+++.|.| .|.+|..+++.|.++|++|+. .+.+
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~-~~r~ 39 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGWDLAL-VARS 39 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEE-EeCC
Confidence 467899999 499999999999999999984 4543
No 371
>PRK06196 oxidoreductase; Provisional
Probab=83.26 E-value=2 Score=41.46 Aligned_cols=35 Identities=17% Similarity=0.308 Sum_probs=30.7
Q ss_pred CCCCCCCEEEEEec-cchHHHHHHHHHHCCCEEEee
Q 018214 201 GKSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAV 235 (359)
Q Consensus 201 g~~l~g~~v~VqG~-G~VG~~~a~~L~~~Gakvvav 235 (359)
..++++++|.|.|. |-+|.++|+.|.+.|++|+.+
T Consensus 21 ~~~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~ 56 (315)
T PRK06196 21 GHDLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVP 56 (315)
T ss_pred CCCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 34578999999995 889999999999999999854
No 372
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=83.25 E-value=1.4 Score=42.40 Aligned_cols=32 Identities=28% Similarity=0.353 Sum_probs=29.1
Q ss_pred CEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 207 ~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
++|+|.|.|.+|..+|..|.+.|..|+ +.|.+
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~-~~d~~ 33 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTT-LVDIK 33 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEE-EEeCC
Confidence 479999999999999999999999998 66776
No 373
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=83.24 E-value=1.9 Score=39.85 Aligned_cols=35 Identities=23% Similarity=0.427 Sum_probs=30.3
Q ss_pred CCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 204 ISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 204 l~g~~v~VqG-~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
++++++.|.| .|.+|.++|+.|.++|++|+ +.|.+
T Consensus 4 l~~~~vlItGas~~iG~~ia~~l~~~G~~v~-~~~r~ 39 (257)
T PRK07067 4 LQGKVALLTGAASGIGEAVAERYLAEGARVV-IADIK 39 (257)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEE-EEcCC
Confidence 6789999999 59999999999999999998 44554
No 374
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=83.23 E-value=1.6 Score=42.11 Aligned_cols=32 Identities=28% Similarity=0.316 Sum_probs=29.1
Q ss_pred CEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 207 ~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
++|.|.|.|.+|..+|..|+..|..|+ +.|.+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~-~~d~~ 36 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVW-LLDSD 36 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEE-EEeCC
Confidence 579999999999999999999999988 66776
No 375
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=83.20 E-value=1.9 Score=39.72 Aligned_cols=36 Identities=28% Similarity=0.445 Sum_probs=31.2
Q ss_pred CCCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 203 SISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 203 ~l~g~~v~VqG-~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
+++++++.|.| .|.+|.++++.|.+.|++|+ +.+.+
T Consensus 6 ~l~~k~~lItGas~giG~~ia~~L~~~G~~vv-l~~r~ 42 (254)
T PRK08085 6 SLAGKNILITGSAQGIGFLLATGLAEYGAEII-INDIT 42 (254)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHcCCEEE-EEcCC
Confidence 46899999999 58999999999999999998 55554
No 376
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=83.19 E-value=2.3 Score=42.95 Aligned_cols=81 Identities=21% Similarity=0.270 Sum_probs=54.5
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC----------C-Ccccc-c--c----ccc----ccceEEEecCC
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT----------G-GVLNK-E--N----AAD----VKAKFIIEAAN 261 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~----------~-~~I~~-~--n----a~~----i~akiVvegAN 261 (359)
-.|.+|.|.|.|.+|..+++.+...|+++|.++|.+ | ..++. + + ..+ -.+.+|+|...
T Consensus 184 ~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~Ga~~v~~~~~~~~~~~v~~~~~~~g~Dvvid~~G 263 (393)
T TIGR02819 184 GPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFGCETVDLSKDATLPEQIEQILGEPEVDCAVDCVG 263 (393)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcCCeEEecCCcccHHHHHHHHcCCCCCcEEEECCC
Confidence 368999999999999999999999999876566654 1 11211 1 1 111 13578888877
Q ss_pred CC---------------CCHHHHHHHHhCCCeEecccc
Q 018214 262 HP---------------TDPEADEILSKKGVVILPDIY 284 (359)
Q Consensus 262 ~p---------------~t~ea~~~L~~rGI~viPD~l 284 (359)
.+ +-.++-+.++..|.+++-...
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~ 301 (393)
T TIGR02819 264 FEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLY 301 (393)
T ss_pred CccccccccccccchHHHHHHHHHHhhCCCEEEEeeec
Confidence 65 335566777788877766543
No 377
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=83.18 E-value=3.6 Score=45.56 Aligned_cols=32 Identities=28% Similarity=0.473 Sum_probs=29.1
Q ss_pred CEEEEEeccchHHHH-HHHHHHCCCEEEeecCCC
Q 018214 207 MKFAIQGFGNVGSWA-AKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 207 ~~v~VqG~G~VG~~~-a~~L~~~GakvvavsD~~ 239 (359)
+++.|.|.|..|.++ |++|++.|++|+ ++|.+
T Consensus 5 ~~i~viG~G~sG~salA~~L~~~G~~V~-~sD~~ 37 (809)
T PRK14573 5 LFYHFIGIGGIGMSALAHILLDRGYSVS-GSDLS 37 (809)
T ss_pred ceEEEEEecHHhHHHHHHHHHHCCCeEE-EECCC
Confidence 468999999999998 999999999998 88975
No 378
>PRK08265 short chain dehydrogenase; Provisional
Probab=83.16 E-value=2 Score=40.15 Aligned_cols=36 Identities=19% Similarity=0.301 Sum_probs=30.9
Q ss_pred CCCCCEEEEEec-cchHHHHHHHHHHCCCEEEeecCCC
Q 018214 203 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 203 ~l~g~~v~VqG~-G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
+++++++.|.|. |-+|.++|+.|.+.|++|+ +.|.+
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~-~~~r~ 39 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALVAAGARVA-IVDID 39 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEE-EEeCC
Confidence 368899999995 8999999999999999998 55553
No 379
>PRK12829 short chain dehydrogenase; Provisional
Probab=83.05 E-value=2 Score=39.65 Aligned_cols=32 Identities=22% Similarity=0.449 Sum_probs=29.0
Q ss_pred CCCCEEEEEe-ccchHHHHHHHHHHCCCEEEee
Q 018214 204 ISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAV 235 (359)
Q Consensus 204 l~g~~v~VqG-~G~VG~~~a~~L~~~Gakvvav 235 (359)
++++++.|.| .|.+|+++++.|.+.|++|+.+
T Consensus 9 ~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~ 41 (264)
T PRK12829 9 LDGLRVLVTGGASGIGRAIAEAFAEAGARVHVC 41 (264)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEE
Confidence 6889999999 5999999999999999998844
No 380
>PRK05872 short chain dehydrogenase; Provisional
Probab=83.04 E-value=1.9 Score=41.24 Aligned_cols=36 Identities=22% Similarity=0.433 Sum_probs=30.9
Q ss_pred CCCCCEEEEEec-cchHHHHHHHHHHCCCEEEeecCCC
Q 018214 203 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 203 ~l~g~~v~VqG~-G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
+++|+++.|.|. |.+|..+|+.|.+.|++|+ +.+.+
T Consensus 6 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~-~~~r~ 42 (296)
T PRK05872 6 SLAGKVVVVTGAARGIGAELARRLHARGAKLA-LVDLE 42 (296)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEE-EEeCC
Confidence 478999999994 8899999999999999988 54553
No 381
>PRK07236 hypothetical protein; Provisional
Probab=83.03 E-value=3.3 Score=41.21 Aligned_cols=62 Identities=24% Similarity=0.209 Sum_probs=45.1
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCCCCcccccccccccceEEEecCCCCCCHHHHHHHHhCCCe
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVV 278 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~~~~I~~~na~~i~akiVvegAN~p~t~ea~~~L~~rGI~ 278 (359)
....+|+|.|.|.+|..+|..|.+.|.+|+ |-|...... +.. |+-..+.|+..++|.+-|+.
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~-v~E~~~~~~-----~~~-------g~gi~l~~~~~~~l~~lg~~ 65 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVD-VFERSPTEL-----DGR-------GAGIVLQPELLRALAEAGVA 65 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEE-EEecCCCCc-----CCC-------CceeEeCHHHHHHHHHcCCC
Confidence 456789999999999999999999999987 666532111 001 22223578888999998874
No 382
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=83.01 E-value=4.7 Score=41.80 Aligned_cols=72 Identities=24% Similarity=0.292 Sum_probs=49.2
Q ss_pred CEEEEEeccchHHHHHHHHHHC---CCEEEeecCCC------------------CCcc---------------ccc----
Q 018214 207 MKFAIQGFGNVGSWAAKFFHEH---GGKVVAVSDIT------------------GGVL---------------NKE---- 246 (359)
Q Consensus 207 ~~v~VqG~G~VG~~~a~~L~~~---GakvvavsD~~------------------~~~I---------------~~~---- 246 (359)
.||.|=|||.+|+.+.|.+.+. ...||+|-|.. ...| .-.
T Consensus 76 ikVgINGFGRIGR~vlR~~~~~~~~~ievVaINd~~~~~~~ayLlkyDS~hG~f~~~v~~~~~~~L~v~Gk~I~V~~~~d 155 (442)
T PLN02237 76 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSMLGTFKADVKIVDDETISVDGKPIKVVSNRD 155 (442)
T ss_pred EEEEEECCChHHHHHHHHHHHccCCCeEEEEECCCCCHHHHHHHHccccCCCCcCCceEECCCCEEEECCEEEEEEEcCC
Confidence 6899999999999999987643 58999998855 1111 100
Q ss_pred --c--cccccceEEEecCCCCCCHHHHHHHHhCCCe
Q 018214 247 --N--AADVKAKFIIEAANHPTDPEADEILSKKGVV 278 (359)
Q Consensus 247 --n--a~~i~akiVvegAN~p~t~ea~~~L~~rGI~ 278 (359)
+ ....++.+|+|.+-..+|.+-...-.+.|..
T Consensus 156 p~~l~W~~~gVDiViE~TG~f~s~e~a~~hl~aGAk 191 (442)
T PLN02237 156 PLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAK 191 (442)
T ss_pred chhCChhhcCCCEEEEccChhhhHHHHHHHHhCCCE
Confidence 1 1124677999999888776655545556643
No 383
>PRK07063 short chain dehydrogenase; Provisional
Probab=83.00 E-value=1.9 Score=39.90 Aligned_cols=35 Identities=20% Similarity=0.394 Sum_probs=30.3
Q ss_pred CCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 204 ISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 204 l~g~~v~VqG-~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
++++++.|.| .|-+|.++++.|.+.|++|+ +.+.+
T Consensus 5 l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv-~~~r~ 40 (260)
T PRK07063 5 LAGKVALVTGAAQGIGAAIARAFAREGAAVA-LADLD 40 (260)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEE-EEeCC
Confidence 6899999999 58999999999999999998 44553
No 384
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=83.00 E-value=2.4 Score=42.40 Aligned_cols=59 Identities=22% Similarity=0.227 Sum_probs=44.3
Q ss_pred CEEEEEeccchHHHHHHHHHHCCCEEEeecCCCCCcccccccccccceEEEecCCCCCCHHHHHHHHhCCCe
Q 018214 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVV 278 (359)
Q Consensus 207 ~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~~~~I~~~na~~i~akiVvegAN~p~t~ea~~~L~~rGI~ 278 (359)
..|+|.|.|.+|..+|..|.+.|.+|+ |-|.. .++..+ .+....++|.+.++|++-|+.
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~~G~~V~-l~E~~----~~~~~~--------~~r~~~l~~~~~~~L~~lG~~ 61 (387)
T COG0654 3 LDVAIVGAGPAGLALALALARAGLDVT-LLERA----PRELLE--------RGRGIALSPNALRALERLGLW 61 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEE-EEccC----cccccc--------CceeeeecHhHHHHHHHcCCh
Confidence 579999999999999999999999987 65552 111111 114445788899999999984
No 385
>PRK06141 ornithine cyclodeaminase; Validated
Probab=82.96 E-value=6.2 Score=38.75 Aligned_cols=66 Identities=21% Similarity=0.208 Sum_probs=39.8
Q ss_pred cCcccc-cCCCCCCCchhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHH-CCCEEEeecCCC
Q 018214 169 TGKPID-LGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHE-HGGKVVAVSDIT 239 (359)
Q Consensus 169 tGkp~~-~GG~~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~~v~VqG~G~VG~~~a~~L~~-~GakvvavsD~~ 239 (359)
||.|.. +-|..-..--||-.-..+++.+ .. ...+++.|.|.|.+|...++.|.. .+.+=|.|.+.+
T Consensus 92 tG~p~ai~d~~~lT~~RTaa~sala~~~L----a~-~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs 159 (314)
T PRK06141 92 TGEPLALVDGTELTARRTAAASALAASYL----AR-KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRD 159 (314)
T ss_pred CCCEEEEEcCcchhcchhHHHHHHHHHHh----CC-CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 677765 3333322333443333333332 22 357899999999999999986654 554433377776
No 386
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=82.92 E-value=1.6 Score=41.73 Aligned_cols=32 Identities=25% Similarity=0.444 Sum_probs=28.6
Q ss_pred CCCEEEEEe-ccchHHHHHHHHHHCCCEEEeec
Q 018214 205 SNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVS 236 (359)
Q Consensus 205 ~g~~v~VqG-~G~VG~~~a~~L~~~Gakvvavs 236 (359)
++++|.|.| .|-+|+++++.|.+.|.+|+++.
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~ 35 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATV 35 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEE
Confidence 468999999 69999999999999999998654
No 387
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=82.90 E-value=1.5 Score=47.22 Aligned_cols=34 Identities=32% Similarity=0.368 Sum_probs=30.8
Q ss_pred CCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 205 SNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 205 ~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
.+++|+|.|.|..|..+|.+|.+.|++|+ |.|..
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~-V~E~~ 359 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVT-VYDRH 359 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEE-EEecC
Confidence 68999999999999999999999999987 66654
No 388
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=82.83 E-value=9 Score=37.68 Aligned_cols=82 Identities=21% Similarity=0.251 Sum_probs=54.1
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCC-EEEeecCCC---------C--Ccccccc----c-ccc------cceEEEecC
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGG-KVVAVSDIT---------G--GVLNKEN----A-ADV------KAKFIIEAA 260 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~Ga-kvvavsD~~---------~--~~I~~~n----a-~~i------~akiVvegA 260 (359)
-.|.+|.|.|.|.+|..+++.+...|+ +|++++... | .+++... . +.+ .+.+|++..
T Consensus 186 ~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~v~~~~~~~~d~vid~~ 265 (369)
T cd08301 186 KKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVTEFVNPKDHDKPVQEVIAEMTGGGVDYSFECT 265 (369)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcccccchhHHHHHHHHhCCCCCEEEECC
Confidence 468999999999999999999999999 788664332 1 2233211 1 111 367888877
Q ss_pred CCC-CCHHHHHHHHhC-CCeEeccccc
Q 018214 261 NHP-TDPEADEILSKK-GVVILPDIYA 285 (359)
Q Consensus 261 N~p-~t~ea~~~L~~r-GI~viPD~la 285 (359)
..+ ...++-+.++.. |.+++.....
T Consensus 266 G~~~~~~~~~~~~~~~~g~~v~~g~~~ 292 (369)
T cd08301 266 GNIDAMISAFECVHDGWGVTVLLGVPH 292 (369)
T ss_pred CChHHHHHHHHHhhcCCCEEEEECcCC
Confidence 655 335566677774 7777766543
No 389
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=82.78 E-value=2.3 Score=38.89 Aligned_cols=35 Identities=17% Similarity=0.103 Sum_probs=29.3
Q ss_pred CCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeecCC
Q 018214 204 ISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDI 238 (359)
Q Consensus 204 l~g~~v~VqG-~G~VG~~~a~~L~~~GakvvavsD~ 238 (359)
+++++++|.| .|.+|.++++.|.+.|++|+.+.+.
T Consensus 2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r 37 (250)
T PRK08063 2 FSGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYAR 37 (250)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence 4678999999 4899999999999999998744443
No 390
>PRK05875 short chain dehydrogenase; Provisional
Probab=82.75 E-value=2 Score=40.24 Aligned_cols=34 Identities=21% Similarity=0.294 Sum_probs=30.0
Q ss_pred CCCCCEEEEEec-cchHHHHHHHHHHCCCEEEeec
Q 018214 203 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVS 236 (359)
Q Consensus 203 ~l~g~~v~VqG~-G~VG~~~a~~L~~~Gakvvavs 236 (359)
+++++++.|.|. |.+|+++++.|.+.|++|+.++
T Consensus 4 ~~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~ 38 (276)
T PRK05875 4 SFQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVG 38 (276)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEe
Confidence 467899999995 8999999999999999998553
No 391
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=82.69 E-value=2 Score=39.71 Aligned_cols=33 Identities=9% Similarity=0.168 Sum_probs=29.1
Q ss_pred CCCCCEEEEEecc---chHHHHHHHHHHCCCEEEee
Q 018214 203 SISNMKFAIQGFG---NVGSWAAKFFHEHGGKVVAV 235 (359)
Q Consensus 203 ~l~g~~v~VqG~G---~VG~~~a~~L~~~Gakvvav 235 (359)
+++++++.|.|.. .+|.++|+.|.+.|++|+.+
T Consensus 2 ~l~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~ 37 (256)
T PRK12748 2 PLMKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFT 37 (256)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEE
Confidence 4688999999974 69999999999999999855
No 392
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=82.66 E-value=1.1 Score=42.45 Aligned_cols=66 Identities=29% Similarity=0.302 Sum_probs=38.4
Q ss_pred CCEEEEEeccchHHHHHHHHHHCCCEEEeecCCCCCcccccc---cccccceEEEecCCCCCCHHHHHHHHhCCCeEec
Q 018214 206 NMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGGVLNKEN---AADVKAKFIIEAANHPTDPEADEILSKKGVVILP 281 (359)
Q Consensus 206 g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~~~~I~~~n---a~~i~akiVvegAN~p~t~ea~~~L~~rGI~viP 281 (359)
...|+|.|.|+.|..+|.+|.+.|.||. +-+.+ ..+-... ...++ ++|+ .++++.+|.+=||.|-+
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~-v~E~~-~~~GGg~~~Gg~lf~-~iVV-------q~~a~~iL~elgi~y~~ 85 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVA-VIERK-LSPGGGMWGGGMLFN-KIVV-------QEEADEILDELGIPYEE 85 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EE-EEESS-SS-BTTTTS-CTT----EEE-------ETTTHHHHHHHT---EE
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEE-EEecC-CCCCccccccccccc-hhhh-------hhhHHHHHHhCCceeEE
Confidence 4569999999999999999999999998 66664 1111000 00111 3443 34677888888887765
No 393
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=82.63 E-value=1.9 Score=41.00 Aligned_cols=35 Identities=20% Similarity=0.244 Sum_probs=30.2
Q ss_pred CCCCEEEEEecc---chHHHHHHHHHHCCCEEEeecCCC
Q 018214 204 ISNMKFAIQGFG---NVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 204 l~g~~v~VqG~G---~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
+++|++.|.|.+ -+|..+|+.|.+.|++|+ +++.+
T Consensus 3 l~~k~~lItGas~~~GIG~aiA~~la~~G~~Vi-l~~r~ 40 (274)
T PRK08415 3 MKGKKGLIVGVANNKSIAYGIAKACFEQGAELA-FTYLN 40 (274)
T ss_pred cCCcEEEEECCCCCCCHHHHHHHHHHHCCCEEE-EEecC
Confidence 578999999974 699999999999999998 55653
No 394
>PRK07806 short chain dehydrogenase; Provisional
Probab=82.62 E-value=2.6 Score=38.62 Aligned_cols=34 Identities=21% Similarity=0.273 Sum_probs=29.9
Q ss_pred CCCCEEEEEec-cchHHHHHHHHHHCCCEEEeecC
Q 018214 204 ISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSD 237 (359)
Q Consensus 204 l~g~~v~VqG~-G~VG~~~a~~L~~~GakvvavsD 237 (359)
++++++.|.|. |-+|.++++.|.+.|++|+.++.
T Consensus 4 ~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r 38 (248)
T PRK07806 4 LPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYR 38 (248)
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 67899999995 99999999999999999986543
No 395
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=82.59 E-value=1.5 Score=49.73 Aligned_cols=33 Identities=21% Similarity=0.372 Sum_probs=30.4
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCCEEEeecC
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSD 237 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD 237 (359)
..|++|+|.|.|+.|..+|.+|.+.|++|+ +-|
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vt-v~E 413 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVT-AID 413 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEE-EEc
Confidence 479999999999999999999999999998 555
No 396
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=82.51 E-value=2.2 Score=39.67 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=29.8
Q ss_pred CCCCCEEEEEec-cchHHHHHHHHHHCCCEEEeecCC
Q 018214 203 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 238 (359)
Q Consensus 203 ~l~g~~v~VqG~-G~VG~~~a~~L~~~GakvvavsD~ 238 (359)
+++++++.|.|. |.+|.++++.|.+.|++|+ +.+.
T Consensus 2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~-~~~r 37 (262)
T TIGR03325 2 RLKGEVVLVTGGASGLGRAIVDRFVAEGARVA-VLDK 37 (262)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCCEEE-EEeC
Confidence 367899999994 7899999999999999998 4444
No 397
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=82.46 E-value=2.2 Score=39.51 Aligned_cols=36 Identities=25% Similarity=0.275 Sum_probs=30.8
Q ss_pred CCCCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeecCC
Q 018214 202 KSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDI 238 (359)
Q Consensus 202 ~~l~g~~v~VqG-~G~VG~~~a~~L~~~GakvvavsD~ 238 (359)
.+++++++.|.| .|.+|.++|+.|.++|++|+ +.+.
T Consensus 8 ~~~~~k~ilItGa~g~IG~~la~~l~~~G~~V~-~~~r 44 (259)
T PRK08213 8 FDLSGKTALVTGGSRGLGLQIAEALGEAGARVV-LSAR 44 (259)
T ss_pred hCcCCCEEEEECCCchHHHHHHHHHHHcCCEEE-EEeC
Confidence 347899999999 59999999999999999998 4444
No 398
>PRK06197 short chain dehydrogenase; Provisional
Probab=82.43 E-value=2 Score=41.20 Aligned_cols=34 Identities=21% Similarity=0.180 Sum_probs=30.1
Q ss_pred CCCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeec
Q 018214 203 SISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVS 236 (359)
Q Consensus 203 ~l~g~~v~VqG-~G~VG~~~a~~L~~~Gakvvavs 236 (359)
++++++|.|.| .|-+|.++|+.|.+.|++|+.++
T Consensus 13 ~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~ 47 (306)
T PRK06197 13 DQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAV 47 (306)
T ss_pred cCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEe
Confidence 47899999999 59999999999999999998554
No 399
>PRK07035 short chain dehydrogenase; Provisional
Probab=82.42 E-value=2.2 Score=39.26 Aligned_cols=35 Identities=17% Similarity=0.317 Sum_probs=30.4
Q ss_pred CCCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeecCC
Q 018214 203 SISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDI 238 (359)
Q Consensus 203 ~l~g~~v~VqG-~G~VG~~~a~~L~~~GakvvavsD~ 238 (359)
+++++++.|.| .|.+|.++++.|.+.|++|+.+ +.
T Consensus 5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~-~r 40 (252)
T PRK07035 5 DLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVS-SR 40 (252)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEE-eC
Confidence 47889999998 6899999999999999999955 44
No 400
>PLN02206 UDP-glucuronate decarboxylase
Probab=82.37 E-value=1.8 Score=44.57 Aligned_cols=36 Identities=25% Similarity=0.422 Sum_probs=31.5
Q ss_pred CCCCCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeec
Q 018214 201 GKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVS 236 (359)
Q Consensus 201 g~~l~g~~v~VqG-~G~VG~~~a~~L~~~Gakvvavs 236 (359)
|..-++++|.|.| .|-||+++++.|.+.|.+|+++.
T Consensus 114 ~~~~~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld 150 (442)
T PLN02206 114 GLKRKGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVD 150 (442)
T ss_pred ccccCCCEEEEECcccHHHHHHHHHHHHCcCEEEEEe
Confidence 4445789999999 59999999999999999999764
No 401
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=82.35 E-value=1.8 Score=41.49 Aligned_cols=31 Identities=23% Similarity=0.228 Sum_probs=27.6
Q ss_pred EEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 208 KFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 208 ~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
+|.|.|.|.+|+.+|+.|.+.|.+|+ +.|.+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~-~~d~~ 32 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVY-GVSRR 32 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEE-EEECC
Confidence 68999999999999999999999987 55665
No 402
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=82.25 E-value=2.1 Score=40.12 Aligned_cols=33 Identities=21% Similarity=0.258 Sum_probs=28.8
Q ss_pred CCCCEEEEEe---ccchHHHHHHHHHHCCCEEEeecC
Q 018214 204 ISNMKFAIQG---FGNVGSWAAKFFHEHGGKVVAVSD 237 (359)
Q Consensus 204 l~g~~v~VqG---~G~VG~~~a~~L~~~GakvvavsD 237 (359)
++++++.|.| .+-+|.++|+.|.+.|++|+ +.+
T Consensus 4 ~~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~-~~~ 39 (261)
T PRK08690 4 LQGKKILITGMISERSIAYGIAKACREQGAELA-FTY 39 (261)
T ss_pred cCCcEEEEECCCCCCcHHHHHHHHHHHCCCEEE-EEc
Confidence 6899999999 45799999999999999998 443
No 403
>PRK06114 short chain dehydrogenase; Provisional
Probab=82.22 E-value=2.2 Score=39.47 Aligned_cols=36 Identities=17% Similarity=0.227 Sum_probs=30.9
Q ss_pred CCCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 203 SISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 203 ~l~g~~v~VqG-~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
+++++++.|.| .|-+|.++|+.|.+.|++|+ +.+.+
T Consensus 5 ~~~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~-~~~r~ 41 (254)
T PRK06114 5 DLDGQVAFVTGAGSGIGQRIAIGLAQAGADVA-LFDLR 41 (254)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEE-EEeCC
Confidence 47899999998 57899999999999999998 55543
No 404
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=82.17 E-value=1.5 Score=47.44 Aligned_cols=36 Identities=22% Similarity=0.324 Sum_probs=33.0
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
|+..+|.|.|.|-+|..+|++|...|.+=+.+.|.+
T Consensus 336 L~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D 371 (664)
T TIGR01381 336 YSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNG 371 (664)
T ss_pred HhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 789999999999999999999999998766688874
No 405
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=82.16 E-value=2.8 Score=41.23 Aligned_cols=33 Identities=18% Similarity=0.144 Sum_probs=28.7
Q ss_pred CEEEEEeccchHHHHHHHHHHC-CCEEEeecCCC
Q 018214 207 MKFAIQGFGNVGSWAAKFFHEH-GGKVVAVSDIT 239 (359)
Q Consensus 207 ~~v~VqG~G~VG~~~a~~L~~~-GakvvavsD~~ 239 (359)
.+|++-|+|+||.++.+.|.++ |..+|++-+++
T Consensus 3 ~~vvqyGtG~vGv~air~l~akpe~elvgawv~s 36 (350)
T COG3804 3 LRVVQYGTGSVGVAAIRGLLAKPELELVGAWVHS 36 (350)
T ss_pred ceeEEeccchHHHHHHHHHHcCCCCceEEEEecC
Confidence 4788999999999988888766 99999988876
No 406
>PLN02253 xanthoxin dehydrogenase
Probab=82.08 E-value=2.1 Score=40.13 Aligned_cols=35 Identities=26% Similarity=0.525 Sum_probs=30.2
Q ss_pred CCCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeecCC
Q 018214 203 SISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDI 238 (359)
Q Consensus 203 ~l~g~~v~VqG-~G~VG~~~a~~L~~~GakvvavsD~ 238 (359)
.++++++.|.| .|.+|.++++.|.+.|++|+ +.|.
T Consensus 15 ~l~~k~~lItGas~gIG~~la~~l~~~G~~v~-~~~~ 50 (280)
T PLN02253 15 RLLGKVALVTGGATGIGESIVRLFHKHGAKVC-IVDL 50 (280)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHcCCEEE-EEeC
Confidence 36889999999 58999999999999999998 4454
No 407
>COG0100 RpsK Ribosomal protein S11 [Translation, ribosomal structure and biogenesis]
Probab=81.94 E-value=5.6 Score=34.52 Aligned_cols=57 Identities=19% Similarity=0.251 Sum_probs=46.7
Q ss_pred chhHHHHHHHHHHHHH-HhCCCCCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 183 AATGLGVFFATEALLA-EHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 183 ~aTg~Gv~~~~~~~~~-~~g~~l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
..|-|-.-.+.+.+.+ .+...++...|.|.|+|.-..++.+.|...|.+|.-|.|..
T Consensus 57 k~tpyAA~~aa~~aa~~a~e~Gi~~v~v~vkgpG~GreaAiraL~~ag~~i~~I~DvT 114 (129)
T COG0100 57 KSTPYAAQLAAEDAAKKAKEHGIKSVEVKVKGPGPGREAAIRALAAAGLKITRIEDVT 114 (129)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCccEEEEEEECCCCcHHHHHHHHHHccceEEEEEEcC
Confidence 7777777667766665 33455788899999999999999999999999999898874
No 408
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=81.94 E-value=2.3 Score=39.64 Aligned_cols=36 Identities=28% Similarity=0.345 Sum_probs=30.8
Q ss_pred CCCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 203 SISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 203 ~l~g~~v~VqG-~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
+++++++.|.| .|.+|.++++.|.++|++|+ +.+.+
T Consensus 7 ~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv-~~~~~ 43 (265)
T PRK07097 7 SLKGKIALITGASYGIGFAIAKAYAKAGATIV-FNDIN 43 (265)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCeEE-EEeCC
Confidence 57899999998 58999999999999999998 54554
No 409
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=81.89 E-value=2.2 Score=39.84 Aligned_cols=34 Identities=18% Similarity=0.433 Sum_probs=29.9
Q ss_pred CCCCEEEEEec---cchHHHHHHHHHHCCCEEEeecCC
Q 018214 204 ISNMKFAIQGF---GNVGSWAAKFFHEHGGKVVAVSDI 238 (359)
Q Consensus 204 l~g~~v~VqG~---G~VG~~~a~~L~~~GakvvavsD~ 238 (359)
+++++++|.|. +-+|.++|+.|++.|++|+ +.+.
T Consensus 5 ~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~-l~~r 41 (256)
T PRK07889 5 LEGKRILVTGVITDSSIAFHVARVAQEQGAEVV-LTGF 41 (256)
T ss_pred ccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEE-EecC
Confidence 67899999996 6899999999999999998 5554
No 410
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=81.83 E-value=2 Score=42.19 Aligned_cols=35 Identities=17% Similarity=0.245 Sum_probs=31.1
Q ss_pred CCCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeecC
Q 018214 203 SISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSD 237 (359)
Q Consensus 203 ~l~g~~v~VqG-~G~VG~~~a~~L~~~GakvvavsD 237 (359)
-++.++|.|.| .|-+|+++++.|.+.|.+|+++..
T Consensus 12 ~~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~ 47 (348)
T PRK15181 12 VLAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDN 47 (348)
T ss_pred cccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeC
Confidence 46789999999 599999999999999999997753
No 411
>PRK09135 pteridine reductase; Provisional
Probab=81.77 E-value=2.4 Score=38.55 Aligned_cols=33 Identities=24% Similarity=0.201 Sum_probs=29.2
Q ss_pred CCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeec
Q 018214 204 ISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVS 236 (359)
Q Consensus 204 l~g~~v~VqG-~G~VG~~~a~~L~~~Gakvvavs 236 (359)
.+++++.|.| .|-+|+++++.|.+.|++|+.++
T Consensus 4 ~~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~ 37 (249)
T PRK09135 4 DSAKVALITGGARRIGAAIARTLHAAGYRVAIHY 37 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEc
Confidence 4678999999 59999999999999999999664
No 412
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=81.75 E-value=2.6 Score=40.67 Aligned_cols=68 Identities=22% Similarity=0.339 Sum_probs=45.6
Q ss_pred EEEEeccchHHHHHHHHHHCCCEEEeecCCC-CCcccc------------cccccccceEEEecCCCCCCHHHHHHHHhC
Q 018214 209 FAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT-GGVLNK------------ENAADVKAKFIIEAANHPTDPEADEILSKK 275 (359)
Q Consensus 209 v~VqG~G~VG~~~a~~L~~~GakvvavsD~~-~~~I~~------------~na~~i~akiVvegAN~p~t~ea~~~L~~r 275 (359)
|+|-|.|.+++.+|..|++.|++|+ +++.. ..+|-. ..++.+.|+.+ ....|+.++|++.
T Consensus 1 vivrG~gdiAsgva~~L~~aGf~Vv-~~e~~~P~~iRR~vaF~~Av~~g~~~VEgv~a~~~------~~~~e~~~~~~~~ 73 (256)
T TIGR03309 1 VVVRGAGDLATGVAHRLHRSGFKVL-MTETEQPTVIRRTVAFAEAIYTGEVTVEGVTARRI------SNLAEVLKLLQQG 73 (256)
T ss_pred CEEecCchHHHHHHHHHHhCCCEEE-EccCCCCCeeeeeeEeehheeCCcEEEeeEEEEEc------CCHHHHHHHHhcC
Confidence 4688999999999999999999998 77665 222211 12223333331 2356778888888
Q ss_pred CCeEeccc
Q 018214 276 GVVILPDI 283 (359)
Q Consensus 276 GI~viPD~ 283 (359)
.|.++-|-
T Consensus 74 ~ipv~vd~ 81 (256)
T TIGR03309 74 EIPVLVDP 81 (256)
T ss_pred CceEEEcc
Confidence 87777654
No 413
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=81.72 E-value=4.5 Score=39.86 Aligned_cols=35 Identities=31% Similarity=0.354 Sum_probs=29.4
Q ss_pred CCCEEEEEeccchHHHHHHHHHHCCC--EEEeecCCCC
Q 018214 205 SNMKFAIQGFGNVGSWAAKFFHEHGG--KVVAVSDITG 240 (359)
Q Consensus 205 ~g~~v~VqG~G~VG~~~a~~L~~~Ga--kvvavsD~~~ 240 (359)
++++|+|.|.|+||+.+|..|...|. .++ +-|.++
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~-L~D~~~ 41 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELV-IIDINK 41 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEE-EEeCCC
Confidence 57899999999999999999988886 455 778763
No 414
>PRK05868 hypothetical protein; Validated
Probab=81.72 E-value=2.2 Score=42.53 Aligned_cols=57 Identities=19% Similarity=0.283 Sum_probs=40.2
Q ss_pred CEEEEEeccchHHHHHHHHHHCCCEEEeecCCCCCcccccccccccceEEEecCCCCCCHHHHHHHHhCCC
Q 018214 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGV 277 (359)
Q Consensus 207 ~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~~~~I~~~na~~i~akiVvegAN~p~t~ea~~~L~~rGI 277 (359)
++|+|.|.|.+|..+|..|++.|.+|+ |-|.... ++ -.|+...+.+.+-++|++-|+
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~-viE~~~~---------~~----~~g~~i~~~~~a~~~L~~lGl 58 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVT-MVERHPG---------LR----PGGQAIDVRGPALDVLERMGL 58 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEE-EEcCCCC---------CC----CCceeeeeCchHHHHHHhcCC
Confidence 479999999999999999999999976 6555321 11 012333456667777777775
No 415
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.70 E-value=1.8 Score=41.87 Aligned_cols=32 Identities=38% Similarity=0.544 Sum_probs=28.6
Q ss_pred CEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 207 ~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
++|.|.|.|.+|+.+|..|.+.|..|+ +.|.+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~-~~d~~ 36 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVV-LIDVM 36 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEE-EEECC
Confidence 579999999999999999999999988 56765
No 416
>PRK07825 short chain dehydrogenase; Provisional
Probab=81.66 E-value=2.4 Score=39.60 Aligned_cols=35 Identities=23% Similarity=0.370 Sum_probs=30.0
Q ss_pred CCCCCEEEEEec-cchHHHHHHHHHHCCCEEEeecCC
Q 018214 203 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 238 (359)
Q Consensus 203 ~l~g~~v~VqG~-G~VG~~~a~~L~~~GakvvavsD~ 238 (359)
+++++++.|.|. |.+|..+++.|.+.|++|+ +.+.
T Consensus 2 ~~~~~~ilVtGasggiG~~la~~l~~~G~~v~-~~~r 37 (273)
T PRK07825 2 DLRGKVVAITGGARGIGLATARALAALGARVA-IGDL 37 (273)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEE-EEEC
Confidence 467899999995 8999999999999999988 4444
No 417
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.65 E-value=1.8 Score=41.47 Aligned_cols=32 Identities=31% Similarity=0.428 Sum_probs=28.7
Q ss_pred CEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 207 ~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
++|+|.|.|.+|..+|..|...|..|+ +.|.+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~-~~d~~ 35 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVV-MVDIS 35 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceE-EEeCC
Confidence 479999999999999999999999988 56765
No 418
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=81.61 E-value=2 Score=42.84 Aligned_cols=32 Identities=22% Similarity=0.419 Sum_probs=29.3
Q ss_pred CCCEEEEEec-cchHHHHHHHHHHCCCEEEeec
Q 018214 205 SNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVS 236 (359)
Q Consensus 205 ~g~~v~VqG~-G~VG~~~a~~L~~~Gakvvavs 236 (359)
++++|.|.|. |-+|+++++.|.+.|.+|++++
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~ 52 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGHYIIASD 52 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEE
Confidence 6789999996 9999999999999999999775
No 419
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=81.59 E-value=6.1 Score=37.02 Aligned_cols=32 Identities=25% Similarity=0.272 Sum_probs=28.1
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCCEEEee
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAV 235 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~Gakvvav 235 (359)
.++++|+|.|.|+.|..+|..|.+.|.+|.-+
T Consensus 139 ~~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v 170 (300)
T TIGR01292 139 FKNKEVAVVGGGDSAIEEALYLTRIAKKVTLV 170 (300)
T ss_pred cCCCEEEEECCChHHHHHHHHHHhhcCEEEEE
Confidence 46899999999999999999999988887634
No 420
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=81.55 E-value=2 Score=39.96 Aligned_cols=32 Identities=19% Similarity=0.323 Sum_probs=28.7
Q ss_pred CCCCCEEEEEecc---chHHHHHHHHHHCCCEEEe
Q 018214 203 SISNMKFAIQGFG---NVGSWAAKFFHEHGGKVVA 234 (359)
Q Consensus 203 ~l~g~~v~VqG~G---~VG~~~a~~L~~~Gakvva 234 (359)
.++|+++.|.|.. .+|.++|+.|.+.|++|+.
T Consensus 3 ~l~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~ 37 (256)
T PRK12859 3 QLKNKVAVVTGVSRLDGIGAAICKELAEAGADIFF 37 (256)
T ss_pred CcCCcEEEEECCCCCCChHHHHHHHHHHCCCeEEE
Confidence 4789999999974 7999999999999999983
No 421
>PRK07576 short chain dehydrogenase; Provisional
Probab=81.55 E-value=2.4 Score=39.73 Aligned_cols=36 Identities=14% Similarity=0.202 Sum_probs=30.9
Q ss_pred CCCCCEEEEEec-cchHHHHHHHHHHCCCEEEeecCCC
Q 018214 203 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 203 ~l~g~~v~VqG~-G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
+++++++.|.|. |.+|.++++.|.+.|++|+.+ |.+
T Consensus 6 ~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~-~r~ 42 (264)
T PRK07576 6 DFAGKNVVVVGGTSGINLGIAQAFARAGANVAVA-SRS 42 (264)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE-eCC
Confidence 478999999995 899999999999999999854 443
No 422
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=81.53 E-value=1.8 Score=40.89 Aligned_cols=85 Identities=22% Similarity=0.250 Sum_probs=49.2
Q ss_pred CEEEEEeccchHHHHHHHHHHCC---CEEEeecCCC-----------CCcccccccccc-cceEEEecCCCCCCHHHHHH
Q 018214 207 MKFAIQGFGNVGSWAAKFFHEHG---GKVVAVSDIT-----------GGVLNKENAADV-KAKFIIEAANHPTDPEADEI 271 (359)
Q Consensus 207 ~~v~VqG~G~VG~~~a~~L~~~G---akvvavsD~~-----------~~~I~~~na~~i-~akiVvegAN~p~t~ea~~~ 271 (359)
.++.|.|+|++|..+++.|.+.| ..|. +.|.+ +-.++.++.+.+ +|.+|+-+...+...+.-+.
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~-v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~~~~~~v~~~ 81 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDII-VSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKPQVMEEVLSE 81 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEE-EEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCHHHHHHHHHH
Confidence 47999999999999999999988 4555 66765 111222222222 57777776643333333333
Q ss_pred HHhC-CCeEeccccccccCcchhhHh
Q 018214 272 LSKK-GVVILPDIYANSGGVTVSYFE 296 (359)
Q Consensus 272 L~~r-GI~viPD~laNaGGVi~s~~E 296 (359)
+... +-+ ++...+|+-...++
T Consensus 82 l~~~~~~~----vvs~~~gi~~~~l~ 103 (267)
T PRK11880 82 LKGQLDKL----VVSIAAGVTLARLE 103 (267)
T ss_pred HHhhcCCE----EEEecCCCCHHHHH
Confidence 3332 112 34556676544444
No 423
>PRK07814 short chain dehydrogenase; Provisional
Probab=81.49 E-value=2.4 Score=39.56 Aligned_cols=35 Identities=20% Similarity=0.275 Sum_probs=29.9
Q ss_pred CCCCCEEEEEec-cchHHHHHHHHHHCCCEEEeecCC
Q 018214 203 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 238 (359)
Q Consensus 203 ~l~g~~v~VqG~-G~VG~~~a~~L~~~GakvvavsD~ 238 (359)
+++++++.|.|. |-+|.++++.|.++|++|+.+ +.
T Consensus 7 ~~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~-~r 42 (263)
T PRK07814 7 RLDDQVAVVTGAGRGLGAAIALAFAEAGADVLIA-AR 42 (263)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEE-eC
Confidence 368999999995 679999999999999999844 44
No 424
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=81.49 E-value=1.8 Score=43.67 Aligned_cols=38 Identities=24% Similarity=0.363 Sum_probs=35.0
Q ss_pred CCCCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 202 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 202 ~~l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
.+|+...|.|.|+|-.|.-++.+|...|+--+|+-|-|
T Consensus 62 ~~Lk~s~VLVVGaGGLGcPa~~YLaaaGvG~lGiVD~D 99 (427)
T KOG2017|consen 62 LSLKNSSVLVVGAGGLGCPAAQYLAAAGVGRLGIVDYD 99 (427)
T ss_pred cccCCccEEEEccCCCCCHHHHHHHHcCCCeecccccc
Confidence 34888999999999999999999999999888999987
No 425
>PRK07856 short chain dehydrogenase; Provisional
Probab=81.48 E-value=2.7 Score=38.82 Aligned_cols=35 Identities=23% Similarity=0.343 Sum_probs=30.2
Q ss_pred CCCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeecCC
Q 018214 203 SISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDI 238 (359)
Q Consensus 203 ~l~g~~v~VqG-~G~VG~~~a~~L~~~GakvvavsD~ 238 (359)
+++++++.|.| .|.+|+++++.|.+.|++|+ +.+.
T Consensus 3 ~~~~k~~lItGas~gIG~~la~~l~~~g~~v~-~~~r 38 (252)
T PRK07856 3 DLTGRVVLVTGGTRGIGAGIARAFLAAGATVV-VCGR 38 (252)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEE-EEeC
Confidence 47899999999 48899999999999999998 4444
No 426
>PLN02214 cinnamoyl-CoA reductase
Probab=81.44 E-value=2.2 Score=41.94 Aligned_cols=33 Identities=24% Similarity=0.430 Sum_probs=29.9
Q ss_pred CCCCEEEEEec-cchHHHHHHHHHHCCCEEEeec
Q 018214 204 ISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVS 236 (359)
Q Consensus 204 l~g~~v~VqG~-G~VG~~~a~~L~~~Gakvvavs 236 (359)
+++++|.|.|. |-+|+++++.|.+.|++|++++
T Consensus 8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~ 41 (342)
T PLN02214 8 PAGKTVCVTGAGGYIASWIVKILLERGYTVKGTV 41 (342)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence 57889999996 9999999999999999998664
No 427
>PRK06500 short chain dehydrogenase; Provisional
Probab=81.41 E-value=2.5 Score=38.61 Aligned_cols=32 Identities=22% Similarity=0.306 Sum_probs=28.8
Q ss_pred CCCCEEEEEec-cchHHHHHHHHHHCCCEEEee
Q 018214 204 ISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAV 235 (359)
Q Consensus 204 l~g~~v~VqG~-G~VG~~~a~~L~~~Gakvvav 235 (359)
++++++.|.|. |.+|+++++.|.+.|++|+.+
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~ 36 (249)
T PRK06500 4 LQGKTALITGGTSGIGLETARQFLAEGARVAIT 36 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEe
Confidence 57899999995 999999999999999999844
No 428
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=81.39 E-value=2.8 Score=38.89 Aligned_cols=35 Identities=23% Similarity=0.201 Sum_probs=30.2
Q ss_pred CCCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeecC
Q 018214 203 SISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSD 237 (359)
Q Consensus 203 ~l~g~~v~VqG-~G~VG~~~a~~L~~~GakvvavsD 237 (359)
+++++++.|.| .|.+|.++|+.|.++|++|+.++.
T Consensus 4 ~~~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~ 39 (261)
T PRK08936 4 DLEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYR 39 (261)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 47899999999 588999999999999999984433
No 429
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=81.31 E-value=3.3 Score=42.02 Aligned_cols=46 Identities=26% Similarity=0.394 Sum_probs=35.1
Q ss_pred HHHHHHHhC-CCCCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 193 TEALLAEHG-KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 193 ~~~~~~~~g-~~l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
++.+.+.++ ..+..++++|.|+|.+|..+++.|.+.|..|+ +.|.+
T Consensus 217 l~~~~~~~~~~~~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~-vid~~ 263 (453)
T PRK09496 217 IRAVMSEFGRLEKPVKRVMIVGGGNIGYYLAKLLEKEGYSVK-LIERD 263 (453)
T ss_pred HHHHHHHhCccCCCCCEEEEECCCHHHHHHHHHHHhCCCeEE-EEECC
Confidence 333444333 23567899999999999999999999999998 55554
No 430
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=81.31 E-value=2.6 Score=38.06 Aligned_cols=33 Identities=21% Similarity=0.248 Sum_probs=28.6
Q ss_pred CCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeec
Q 018214 204 ISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVS 236 (359)
Q Consensus 204 l~g~~v~VqG-~G~VG~~~a~~L~~~Gakvvavs 236 (359)
+.+++++|.| .|.+|.++++.|.++|++|+.++
T Consensus 3 ~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~ 36 (246)
T PRK05653 3 LQGKTALVTGASRGIGRAIALRLAADGAKVVIYD 36 (246)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEe
Confidence 5678999999 59999999999999999987443
No 431
>PRK07326 short chain dehydrogenase; Provisional
Probab=81.26 E-value=2.5 Score=38.27 Aligned_cols=32 Identities=22% Similarity=0.175 Sum_probs=28.2
Q ss_pred CCCCEEEEEe-ccchHHHHHHHHHHCCCEEEee
Q 018214 204 ISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAV 235 (359)
Q Consensus 204 l~g~~v~VqG-~G~VG~~~a~~L~~~Gakvvav 235 (359)
+.++++.|.| .|.+|.++++.|.+.|++|+.+
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~ 36 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEGYKVAIT 36 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEe
Confidence 4678999998 5999999999999999999855
No 432
>PRK07062 short chain dehydrogenase; Provisional
Probab=81.16 E-value=2.5 Score=39.22 Aligned_cols=37 Identities=14% Similarity=0.214 Sum_probs=31.3
Q ss_pred CCCCCCEEEEEec-cchHHHHHHHHHHCCCEEEeecCCC
Q 018214 202 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 202 ~~l~g~~v~VqG~-G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
.+++|+++.|.|. +.+|.++++.|.+.|++|+ +.+.+
T Consensus 4 ~~l~~k~~lItGas~giG~~ia~~l~~~G~~V~-~~~r~ 41 (265)
T PRK07062 4 IQLEGRVAVVTGGSSGIGLATVELLLEAGASVA-ICGRD 41 (265)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEE-EEeCC
Confidence 3578999999995 7899999999999999998 44443
No 433
>PRK08324 short chain dehydrogenase; Validated
Probab=81.10 E-value=2.3 Score=46.17 Aligned_cols=35 Identities=26% Similarity=0.424 Sum_probs=30.5
Q ss_pred CCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 204 ISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 204 l~g~~v~VqG-~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
+.|+++.|.| .|.+|.++++.|.+.|++|+ +.|.+
T Consensus 420 l~gk~vLVTGasggIG~~la~~L~~~Ga~Vv-l~~r~ 455 (681)
T PRK08324 420 LAGKVALVTGAAGGIGKATAKRLAAEGACVV-LADLD 455 (681)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCcCEEE-EEeCC
Confidence 5789999999 69999999999999999998 55554
No 434
>PRK06847 hypothetical protein; Provisional
Probab=81.06 E-value=3 Score=40.90 Aligned_cols=58 Identities=26% Similarity=0.131 Sum_probs=42.7
Q ss_pred CCEEEEEeccchHHHHHHHHHHCCCEEEeecCCCCCcccccccccccceEEEecCCCCCCHHHHHHHHhCCC
Q 018214 206 NMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGV 277 (359)
Q Consensus 206 g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~~~~I~~~na~~i~akiVvegAN~p~t~ea~~~L~~rGI 277 (359)
-++|+|.|.|..|..+|..|.+.|.+|+ |-|.+.. .+. .|+...++|.+.++|++-|+
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~-v~E~~~~---------~~~----~g~g~~l~~~~~~~l~~~gl 61 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVD-LVEIDPE---------WRV----YGAGITLQGNALRALRELGV 61 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEE-EEecCCC---------Ccc----CCceeeecHHHHHHHHHcCC
Confidence 4689999999999999999999999987 6555311 110 13444567888888888775
No 435
>PRK12831 putative oxidoreductase; Provisional
Probab=80.99 E-value=5.2 Score=41.43 Aligned_cols=30 Identities=33% Similarity=0.242 Sum_probs=27.8
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCCEEE
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVV 233 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~Gakvv 233 (359)
..|++|+|.|-|++|..+|+.|.+.|++|.
T Consensus 279 ~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vt 308 (464)
T PRK12831 279 KVGKKVAVVGGGNVAMDAARTALRLGAEVH 308 (464)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHcCCEEE
Confidence 468999999999999999999999999965
No 436
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=80.94 E-value=1.8 Score=45.82 Aligned_cols=49 Identities=16% Similarity=0.264 Sum_probs=35.6
Q ss_pred CEEEEEeccchHHHHHHHHHHCCCEEEeecCCCCCcccccccccccceEEEe
Q 018214 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGGVLNKENAADVKAKFIIE 258 (359)
Q Consensus 207 ~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~~~~I~~~na~~i~akiVve 258 (359)
-+++|.|+|++|+.+++.|.+.|..++ +-|.|+..+ +.+.+...++|.+
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vv-vId~d~~~~--~~~~~~g~~~i~G 466 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLV-VIETSRTRV--DELRERGIRAVLG 466 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEE-EEECCHHHH--HHHHHCCCeEEEc
Confidence 478999999999999999999999998 557643322 2233345556655
No 437
>PRK08226 short chain dehydrogenase; Provisional
Probab=80.85 E-value=2.6 Score=39.06 Aligned_cols=34 Identities=26% Similarity=0.558 Sum_probs=29.8
Q ss_pred CCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeecCC
Q 018214 204 ISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDI 238 (359)
Q Consensus 204 l~g~~v~VqG-~G~VG~~~a~~L~~~GakvvavsD~ 238 (359)
++++++.|.| .|.+|+++++.|.+.|++|+.+ +.
T Consensus 4 ~~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~-~r 38 (263)
T PRK08226 4 LTGKTALITGALQGIGEGIARVFARHGANLILL-DI 38 (263)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEe-cC
Confidence 6789999998 6899999999999999999855 44
No 438
>PRK12746 short chain dehydrogenase; Provisional
Probab=80.84 E-value=3.2 Score=38.13 Aligned_cols=32 Identities=16% Similarity=0.183 Sum_probs=28.6
Q ss_pred CCCCCEEEEEe-ccchHHHHHHHHHHCCCEEEe
Q 018214 203 SISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVA 234 (359)
Q Consensus 203 ~l~g~~v~VqG-~G~VG~~~a~~L~~~Gakvva 234 (359)
+++++++.|.| .|-+|+++|+.|.++|++|+.
T Consensus 3 ~~~~~~ilItGasg~iG~~la~~l~~~G~~v~i 35 (254)
T PRK12746 3 NLDGKVALVTGASRGIGRAIAMRLANDGALVAI 35 (254)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEE
Confidence 36789999999 699999999999999999873
No 439
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=80.76 E-value=7.2 Score=37.61 Aligned_cols=75 Identities=19% Similarity=0.294 Sum_probs=50.3
Q ss_pred CCEEEEEec-cchHHHHHHHHHHCCC-EEEeecCCC----------C--Ccccccc---cccc------cceEEEecCCC
Q 018214 206 NMKFAIQGF-GNVGSWAAKFFHEHGG-KVVAVSDIT----------G--GVLNKEN---AADV------KAKFIIEAANH 262 (359)
Q Consensus 206 g~~v~VqG~-G~VG~~~a~~L~~~Ga-kvvavsD~~----------~--~~I~~~n---a~~i------~akiVvegAN~ 262 (359)
|.+|.|.|. |.||..+++.+...|+ +|++++... | .+|+... .+.+ .+.+|.+..-+
T Consensus 155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gvd~vid~~g~ 234 (345)
T cd08293 155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGVDVYFDNVGG 234 (345)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCceEEEECCCc
Confidence 489999997 9999999998889999 798665442 1 1122111 1111 35678877666
Q ss_pred CCCHHHHHHHHhCCCeEe
Q 018214 263 PTDPEADEILSKKGVVIL 280 (359)
Q Consensus 263 p~t~ea~~~L~~rGI~vi 280 (359)
+...++-+.|+..|.++.
T Consensus 235 ~~~~~~~~~l~~~G~iv~ 252 (345)
T cd08293 235 EISDTVISQMNENSHIIL 252 (345)
T ss_pred HHHHHHHHHhccCCEEEE
Confidence 555666777888887664
No 440
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=80.71 E-value=2.6 Score=40.59 Aligned_cols=34 Identities=24% Similarity=0.336 Sum_probs=30.0
Q ss_pred CCCEEEEEe-ccchHHHHHHHHHHCCCEEEeecCC
Q 018214 205 SNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDI 238 (359)
Q Consensus 205 ~g~~v~VqG-~G~VG~~~a~~L~~~GakvvavsD~ 238 (359)
.|++|.|.| .|-+|+++++.|.+.|++|+++.+.
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~ 38 (322)
T PLN02986 4 GGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRD 38 (322)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 578999999 6999999999999999999866543
No 441
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=80.68 E-value=2.1 Score=41.15 Aligned_cols=32 Identities=31% Similarity=0.325 Sum_probs=28.6
Q ss_pred CEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 207 ~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
++|+|.|.|.+|..+|..|.+.|..|+ +.|.+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~-l~d~~ 35 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVT-IYDIS 35 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEE-EEeCC
Confidence 579999999999999999999999988 66665
No 442
>PRK12939 short chain dehydrogenase; Provisional
Probab=80.67 E-value=2.7 Score=38.26 Aligned_cols=32 Identities=19% Similarity=0.252 Sum_probs=29.1
Q ss_pred CCCCEEEEEe-ccchHHHHHHHHHHCCCEEEee
Q 018214 204 ISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAV 235 (359)
Q Consensus 204 l~g~~v~VqG-~G~VG~~~a~~L~~~Gakvvav 235 (359)
++++++.|.| .|.+|.++++.|.+.|++|+.+
T Consensus 5 ~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~ 37 (250)
T PRK12939 5 LAGKRALVTGAARGLGAAFAEALAEAGATVAFN 37 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEE
Confidence 6789999999 5999999999999999999855
No 443
>PRK08017 oxidoreductase; Provisional
Probab=80.64 E-value=2.4 Score=38.94 Aligned_cols=29 Identities=28% Similarity=0.311 Sum_probs=26.5
Q ss_pred CEEEEEec-cchHHHHHHHHHHCCCEEEee
Q 018214 207 MKFAIQGF-GNVGSWAAKFFHEHGGKVVAV 235 (359)
Q Consensus 207 ~~v~VqG~-G~VG~~~a~~L~~~Gakvvav 235 (359)
+++.|.|. |.+|.++++.|.+.|++|+.+
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~ 32 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAA 32 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence 68999997 999999999999999999854
No 444
>PRK07577 short chain dehydrogenase; Provisional
Probab=80.64 E-value=2.8 Score=37.92 Aligned_cols=32 Identities=16% Similarity=0.250 Sum_probs=28.2
Q ss_pred CCCEEEEEec-cchHHHHHHHHHHCCCEEEeec
Q 018214 205 SNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVS 236 (359)
Q Consensus 205 ~g~~v~VqG~-G~VG~~~a~~L~~~Gakvvavs 236 (359)
.++++.|.|. |.+|.++++.|.+.|++|+.++
T Consensus 2 ~~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~ 34 (234)
T PRK07577 2 SSRTVLVTGATKGIGLALSLRLANLGHQVIGIA 34 (234)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEe
Confidence 5788999995 8999999999999999998654
No 445
>PRK06940 short chain dehydrogenase; Provisional
Probab=80.59 E-value=4.1 Score=38.57 Aligned_cols=32 Identities=25% Similarity=0.380 Sum_probs=27.0
Q ss_pred CCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 206 NMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 206 g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
+|+++|.|.|-+|.++|+.|. .|++|+ +.|.+
T Consensus 2 ~k~~lItGa~gIG~~la~~l~-~G~~Vv-~~~r~ 33 (275)
T PRK06940 2 KEVVVVIGAGGIGQAIARRVG-AGKKVL-LADYN 33 (275)
T ss_pred CCEEEEECCChHHHHHHHHHh-CCCEEE-EEeCC
Confidence 478899999999999999996 799998 44554
No 446
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=80.58 E-value=72 Score=32.66 Aligned_cols=166 Identities=17% Similarity=0.236 Sum_probs=102.9
Q ss_pred HHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCCCCccccccccc-c----cceEEE----ecCCC
Q 018214 192 ATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGGVLNKENAAD-V----KAKFII----EAANH 262 (359)
Q Consensus 192 ~~~~~~~~~g~~l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~~~~I~~~na~~-i----~akiVv----egAN~ 262 (359)
++++++.- .-..|.+|.|.=.|.-|.-.++.+...|++++-+.-.-|..++.+.+.. + .+++|+ |=+-+
T Consensus 68 amEAav~s--l~~pgdkVLv~~nG~FG~R~~~ia~~~g~~v~~~~~~wg~~v~p~~v~~~L~~~~~~~~V~~vH~ETSTG 145 (383)
T COG0075 68 AMEAAVAS--LVEPGDKVLVVVNGKFGERFAEIAERYGAEVVVLEVEWGEAVDPEEVEEALDKDPDIKAVAVVHNETSTG 145 (383)
T ss_pred HHHHHHHh--ccCCCCeEEEEeCChHHHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcCCCccEEEEEeccCccc
Confidence 55555531 1126889999999999999999999999999855444477777765544 2 245554 33333
Q ss_pred CCCH--HHHHHHHhCCCeEeccccccccCcchhhHhhh-------------------------------hccc--ccccC
Q 018214 263 PTDP--EADEILSKKGVVILPDIYANSGGVTVSYFEWV-------------------------------QNIQ--GFMWE 307 (359)
Q Consensus 263 p~t~--ea~~~L~~rGI~viPD~laNaGGVi~s~~E~~-------------------------------~n~~--~~~w~ 307 (359)
-..| +-.++.++.|.+++=|-++.-||+=.---||= ++.. +++.|
T Consensus 146 vlnpl~~I~~~~k~~g~l~iVDaVsS~Gg~~~~vd~wgiDv~itgSQK~l~~PPGla~v~~S~~a~e~~~~~~~~~~ylD 225 (383)
T COG0075 146 VLNPLKEIAKAAKEHGALLIVDAVSSLGGEPLKVDEWGIDVAITGSQKALGAPPGLAFVAVSERALEAIEERKHPSFYLD 225 (383)
T ss_pred ccCcHHHHHHHHHHcCCEEEEEecccCCCcccchhhcCccEEEecCchhccCCCccceeEECHHHHHHHhcCCCCceeec
Confidence 3333 45678999999999999999999855555552 1110 12222
Q ss_pred HHHHHHHHHH----------HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHcCCC
Q 018214 308 EEKVNHELKR----------YMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATLLRGWE 359 (359)
Q Consensus 308 ~e~v~~~l~~----------~m~~~~~~v~~~a~~~~~~~r~aA~~~A~~Rv~~a~~~rg~~ 359 (359)
-....+-+++ .+...+++.++.-++.|..-|.+-+...-+.+.+++++-|++
T Consensus 226 L~~~~~~~~~~~~~p~Tppv~~i~aL~~al~~i~~EGle~r~~RH~~~~~a~r~~~~alGl~ 287 (383)
T COG0075 226 LKKWLKYMEKKGSTPYTPPVNLIYALREALDLILEEGLEARIARHRRLAEALRAGLEALGLE 287 (383)
T ss_pred HHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 2222222211 112245555566666666666666666667777777777753
No 447
>PLN00198 anthocyanidin reductase; Provisional
Probab=80.53 E-value=2.4 Score=41.13 Aligned_cols=34 Identities=18% Similarity=0.192 Sum_probs=29.8
Q ss_pred CCCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeec
Q 018214 203 SISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVS 236 (359)
Q Consensus 203 ~l~g~~v~VqG-~G~VG~~~a~~L~~~Gakvvavs 236 (359)
..++++|.|.| .|-+|+++++.|.+.|++|++++
T Consensus 6 ~~~~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~ 40 (338)
T PLN00198 6 PTGKKTACVIGGTGFLASLLIKLLLQKGYAVNTTV 40 (338)
T ss_pred CCCCCeEEEECCchHHHHHHHHHHHHCCCEEEEEE
Confidence 35789999999 79999999999999999997553
No 448
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=80.52 E-value=4.9 Score=38.30 Aligned_cols=79 Identities=27% Similarity=0.339 Sum_probs=52.4
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC---------C--Ccccccc-cccccceEEEecCCCC-CCHHHHH
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT---------G--GVLNKEN-AADVKAKFIIEAANHP-TDPEADE 270 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~---------~--~~I~~~n-a~~i~akiVvegAN~p-~t~ea~~ 270 (359)
..|.+|.|.|.|.||..+++.+...|++|++++... + ..++... ...-...+|++..... ....+.+
T Consensus 154 ~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~ 233 (319)
T cd08242 154 TPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARRLGVETVLPDEAESEGGGFDVVVEATGSPSGLELALR 233 (319)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEeCccccccCCCCCEEEECCCChHHHHHHHH
Confidence 368899999999999999999999999988665432 1 0111110 1112356777766443 3456667
Q ss_pred HHHhCCCeEecc
Q 018214 271 ILSKKGVVILPD 282 (359)
Q Consensus 271 ~L~~rGI~viPD 282 (359)
.|...|-++.+.
T Consensus 234 ~l~~~g~~v~~~ 245 (319)
T cd08242 234 LVRPRGTVVLKS 245 (319)
T ss_pred HhhcCCEEEEEc
Confidence 888888776543
No 449
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=80.44 E-value=2.2 Score=41.03 Aligned_cols=32 Identities=25% Similarity=0.394 Sum_probs=29.2
Q ss_pred CEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 207 ~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
++|+|.|.|.+|..+|..|...|..|+ +.|.+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~-l~d~~ 36 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVL-LNDVS 36 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEE-EEeCC
Confidence 579999999999999999999999998 67776
No 450
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=80.30 E-value=2.4 Score=39.13 Aligned_cols=31 Identities=26% Similarity=0.410 Sum_probs=26.8
Q ss_pred EEEEEe-ccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 208 KFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 208 ~v~VqG-~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
++.|.| .|++|+.+++.|.+.|.+|+ +.+.+
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~-v~~r~ 33 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKII-IGSRD 33 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEE-EEEcC
Confidence 689997 99999999999999999887 55554
No 451
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=80.24 E-value=1.4 Score=35.47 Aligned_cols=36 Identities=31% Similarity=0.326 Sum_probs=29.6
Q ss_pred CCEEEEEeccchHHHHHHH-HHHCCCEEEeecCCCCC
Q 018214 206 NMKFAIQGFGNVGSWAAKF-FHEHGGKVVAVSDITGG 241 (359)
Q Consensus 206 g~~v~VqG~G~VG~~~a~~-L~~~GakvvavsD~~~~ 241 (359)
..+|+|+|.|+.|...+.. +...|.+++++.|.+.+
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~ 39 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPE 39 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTT
T ss_pred CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCC
Confidence 4689999999999988743 46789999999999844
No 452
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=80.21 E-value=2.6 Score=39.19 Aligned_cols=34 Identities=18% Similarity=0.184 Sum_probs=30.2
Q ss_pred CCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeecC
Q 018214 204 ISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSD 237 (359)
Q Consensus 204 l~g~~v~VqG-~G~VG~~~a~~L~~~GakvvavsD 237 (359)
.+.+++.|.| .|.+|+.+++.|.+.|++|++++.
T Consensus 15 ~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R 49 (251)
T PLN00141 15 VKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVR 49 (251)
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEec
Confidence 6789999999 599999999999999999987653
No 453
>PRK08244 hypothetical protein; Provisional
Probab=80.18 E-value=3.3 Score=42.79 Aligned_cols=57 Identities=25% Similarity=0.213 Sum_probs=42.0
Q ss_pred CEEEEEeccchHHHHHHHHHHCCCEEEeecCCCCCcccccccccccceEEEecCCCCCCHHHHHHHHhCCC
Q 018214 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGV 277 (359)
Q Consensus 207 ~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~~~~I~~~na~~i~akiVvegAN~p~t~ea~~~L~~rGI 277 (359)
..|+|.|.|.+|..+|..|.+.|.+|+ |-|..... . . .+.-..++|.+-++|++.|+
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~-viEr~~~~-~----~--------~~ra~~l~~~~~e~l~~lGl 59 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTC-VIERLKET-V----P--------YSKALTLHPRTLEILDMRGL 59 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEE-EEecCCCC-C----C--------CcceeEecHHHHHHHHhcCc
Confidence 469999999999999999999999987 65653211 0 0 12223467888888888886
No 454
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=80.08 E-value=2 Score=48.67 Aligned_cols=35 Identities=23% Similarity=0.177 Sum_probs=31.7
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
..|++|+|.|.|+.|..+|.+|.+.|++|+ |-|..
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~Vt-VfE~~ 338 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEGFPVT-VFEAF 338 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCeEE-EEeeC
Confidence 469999999999999999999999999998 66654
No 455
>PLN02427 UDP-apiose/xylose synthase
Probab=80.01 E-value=2.7 Score=41.78 Aligned_cols=36 Identities=28% Similarity=0.397 Sum_probs=31.1
Q ss_pred CCCCCCCEEEEEe-ccchHHHHHHHHHHC-CCEEEeec
Q 018214 201 GKSISNMKFAIQG-FGNVGSWAAKFFHEH-GGKVVAVS 236 (359)
Q Consensus 201 g~~l~g~~v~VqG-~G~VG~~~a~~L~~~-Gakvvavs 236 (359)
|..++.++|.|.| .|-+|+++++.|.+. |.+|+++.
T Consensus 9 ~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~ 46 (386)
T PLN02427 9 GKPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALD 46 (386)
T ss_pred CCcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEe
Confidence 4557888999999 599999999999998 58998774
No 456
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=79.98 E-value=4.5 Score=38.35 Aligned_cols=77 Identities=14% Similarity=0.170 Sum_probs=54.4
Q ss_pred CCCEEEEEec-cchHHHHHHHHHHCCCEEEeecCCCC-----------Ccccccc---ccc-------ccceEEEecCCC
Q 018214 205 SNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDITG-----------GVLNKEN---AAD-------VKAKFIIEAANH 262 (359)
Q Consensus 205 ~g~~v~VqG~-G~VG~~~a~~L~~~GakvvavsD~~~-----------~~I~~~n---a~~-------i~akiVvegAN~ 262 (359)
.|.+|.|.|. |.+|..+++.+..+|++++.+++..+ .+++..+ .+. -.+.+|.+....
T Consensus 139 ~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~ 218 (324)
T cd08292 139 PGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVAELRALGIGPVVSTEQPGWQDKVREAAGGAPISVALDSVGG 218 (324)
T ss_pred CCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHhcCCCEEEcCCCchHHHHHHHHhCCCCCcEEEECCCC
Confidence 5889999985 99999999999999999987877541 1122211 111 136788887777
Q ss_pred CCCHHHHHHHHhCCCeEec
Q 018214 263 PTDPEADEILSKKGVVILP 281 (359)
Q Consensus 263 p~t~ea~~~L~~rGI~viP 281 (359)
+...++.+.|...|..+.-
T Consensus 219 ~~~~~~~~~l~~~g~~v~~ 237 (324)
T cd08292 219 KLAGELLSLLGEGGTLVSF 237 (324)
T ss_pred hhHHHHHHhhcCCcEEEEE
Confidence 7667777888888876543
No 457
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=79.97 E-value=3 Score=38.09 Aligned_cols=32 Identities=25% Similarity=0.454 Sum_probs=28.5
Q ss_pred CCCCEEEEEe-ccchHHHHHHHHHHCCCEEEee
Q 018214 204 ISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAV 235 (359)
Q Consensus 204 l~g~~v~VqG-~G~VG~~~a~~L~~~Gakvvav 235 (359)
++++++.|.| .|.+|+++++.|.+.|++|+.+
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l~~~g~~v~~~ 33 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEEGAKVAVF 33 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEe
Confidence 4789999999 5999999999999999999844
No 458
>PRK06914 short chain dehydrogenase; Provisional
Probab=79.96 E-value=2.9 Score=39.20 Aligned_cols=32 Identities=16% Similarity=0.136 Sum_probs=28.3
Q ss_pred CCCEEEEEe-ccchHHHHHHHHHHCCCEEEeec
Q 018214 205 SNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVS 236 (359)
Q Consensus 205 ~g~~v~VqG-~G~VG~~~a~~L~~~Gakvvavs 236 (359)
+++++.|.| .|-+|+++++.|.+.|++|+.++
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~~V~~~~ 34 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGYLVIATM 34 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCCEEEEEe
Confidence 578899998 59999999999999999998664
No 459
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=79.95 E-value=3.5 Score=37.70 Aligned_cols=36 Identities=19% Similarity=0.213 Sum_probs=29.9
Q ss_pred CCCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeecCC
Q 018214 203 SISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDI 238 (359)
Q Consensus 203 ~l~g~~v~VqG-~G~VG~~~a~~L~~~GakvvavsD~ 238 (359)
+++++++.|.| .|.+|+++++.|+++|++++.+.+.
T Consensus 3 ~~~~~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~ 39 (252)
T PRK06077 3 SLKDKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKK 39 (252)
T ss_pred CCCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 35788999998 5889999999999999998755443
No 460
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=79.94 E-value=2.4 Score=40.43 Aligned_cols=29 Identities=31% Similarity=0.449 Sum_probs=25.9
Q ss_pred EEEEEeccchHHHHHHHHHHCCCEEEeec
Q 018214 208 KFAIQGFGNVGSWAAKFFHEHGGKVVAVS 236 (359)
Q Consensus 208 ~v~VqG~G~VG~~~a~~L~~~Gakvvavs 236 (359)
+++|.|.|++|+.+|..|.+.|..|+-++
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~ 30 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVA 30 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEE
Confidence 68999999999999999999999887443
No 461
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=79.94 E-value=2.8 Score=39.74 Aligned_cols=34 Identities=15% Similarity=0.127 Sum_probs=29.4
Q ss_pred CCCCEEEEEec---cchHHHHHHHHHHCCCEEEeecCC
Q 018214 204 ISNMKFAIQGF---GNVGSWAAKFFHEHGGKVVAVSDI 238 (359)
Q Consensus 204 l~g~~v~VqG~---G~VG~~~a~~L~~~GakvvavsD~ 238 (359)
++++++.|.|. +-+|..+|+.|.+.|++|+ +++.
T Consensus 8 ~~~k~~lItGas~~~GIG~aia~~la~~G~~V~-l~~r 44 (272)
T PRK08159 8 MAGKRGLILGVANNRSIAWGIAKACRAAGAELA-FTYQ 44 (272)
T ss_pred ccCCEEEEECCCCCCcHHHHHHHHHHHCCCEEE-EEcC
Confidence 67899999997 4799999999999999998 5443
No 462
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=79.94 E-value=2.3 Score=41.43 Aligned_cols=32 Identities=31% Similarity=0.291 Sum_probs=28.7
Q ss_pred CEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 207 ~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
++|.|.|.|.+|..+|..|.+.|.+|+ +.|.+
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~-v~d~~ 34 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVR-LWDAD 34 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeE-EEeCC
Confidence 379999999999999999999999998 66765
No 463
>PRK05866 short chain dehydrogenase; Provisional
Probab=79.92 E-value=3.1 Score=39.96 Aligned_cols=36 Identities=22% Similarity=0.370 Sum_probs=30.8
Q ss_pred CCCCCCEEEEEec-cchHHHHHHHHHHCCCEEEeecCC
Q 018214 202 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 238 (359)
Q Consensus 202 ~~l~g~~v~VqG~-G~VG~~~a~~L~~~GakvvavsD~ 238 (359)
..++++++.|.|. |.+|.++|+.|.+.|++|+ +.+.
T Consensus 36 ~~~~~k~vlItGasggIG~~la~~La~~G~~Vi-~~~R 72 (293)
T PRK05866 36 VDLTGKRILLTGASSGIGEAAAEQFARRGATVV-AVAR 72 (293)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEEC
Confidence 4468899999995 9999999999999999998 4444
No 464
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=79.81 E-value=5.2 Score=40.03 Aligned_cols=31 Identities=23% Similarity=0.493 Sum_probs=27.1
Q ss_pred EEEEeccchHHHHHHHHH-HCCCEEEeecCCC
Q 018214 209 FAIQGFGNVGSWAAKFFH-EHGGKVVAVSDIT 239 (359)
Q Consensus 209 v~VqG~G~VG~~~a~~L~-~~GakvvavsD~~ 239 (359)
|+|-|||.+|+.+++.+. +...++|+|+|.+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~ 32 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTS 32 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCC
Confidence 579999999999999876 4578999999976
No 465
>PRK12937 short chain dehydrogenase; Provisional
Probab=79.75 E-value=3.5 Score=37.47 Aligned_cols=34 Identities=21% Similarity=0.206 Sum_probs=29.5
Q ss_pred CCCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeec
Q 018214 203 SISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVS 236 (359)
Q Consensus 203 ~l~g~~v~VqG-~G~VG~~~a~~L~~~Gakvvavs 236 (359)
.++++++.|.| .|.+|+++|+.|.++|++++.+.
T Consensus 2 ~~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~ 36 (245)
T PRK12937 2 TLSNKVAIVTGASRGIGAAIARRLAADGFAVAVNY 36 (245)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEec
Confidence 35789999998 59999999999999999988443
No 466
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=79.73 E-value=1.3 Score=45.40 Aligned_cols=32 Identities=38% Similarity=0.491 Sum_probs=30.3
Q ss_pred CEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 207 ~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
.|+.|.|+|-||.-+|-.++..|++|+|+ |++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~-DIn 41 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGV-DIN 41 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeE-eCC
Confidence 89999999999999999999999999987 877
No 467
>PRK07478 short chain dehydrogenase; Provisional
Probab=79.72 E-value=3.1 Score=38.34 Aligned_cols=35 Identities=31% Similarity=0.386 Sum_probs=29.9
Q ss_pred CCCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeecCC
Q 018214 203 SISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDI 238 (359)
Q Consensus 203 ~l~g~~v~VqG-~G~VG~~~a~~L~~~GakvvavsD~ 238 (359)
+++++++.|.| .|.+|.++++.|.+.|++|+.+ +.
T Consensus 3 ~~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~-~r 38 (254)
T PRK07478 3 RLNGKVAIITGASSGIGRAAAKLFAREGAKVVVG-AR 38 (254)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEE-eC
Confidence 36789999999 4889999999999999999844 44
No 468
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=79.68 E-value=15 Score=38.75 Aligned_cols=153 Identities=17% Similarity=0.279 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHH-HhCCCCCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC---------CCcccc--ccccc----
Q 018214 187 LGVFFATEALLA-EHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT---------GGVLNK--ENAAD---- 250 (359)
Q Consensus 187 ~Gv~~~~~~~~~-~~g~~l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~---------~~~I~~--~na~~---- 250 (359)
.|.+.++.++.+ ++|-+|+|+-++=-|+|-+|++-.+.-.=.|+..+ +.|++ .+-++. ++.+.
T Consensus 137 qGTyeT~~~aark~~g~~L~Gk~~lTaGLGGMgGAQplA~~m~g~v~l-~vEvd~~ri~kR~~~g~ld~~~~~ldea~~~ 215 (546)
T PF01175_consen 137 QGTYETFLNAARKHFGGDLAGKLFLTAGLGGMGGAQPLAATMAGGVGL-IVEVDPSRIEKRLEQGYLDEVTDDLDEALAR 215 (546)
T ss_dssp HHHHHHHHHHHHHHSTTS-TT-EEEEE--STTCCHHHHHHHHTT-EEE-EEES-HHHHHHHHHTTSSSEEESSHHHHHHH
T ss_pred ehhhHHHHHHHHHhcCCCCcceEEEEecccccccchHHHHHhcCceEE-EEEECHHHHHHHHhCCCeeEEcCCHHHHHHH
Confidence 455555566666 68888999999999999999987766666788777 66777 222221 11111
Q ss_pred c-------cceEEEecCCCCCCHHHHHHHHhCCCeEecccccccc-------Ccc---hhhHhhhhcccccccCHHHHHH
Q 018214 251 V-------KAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSG-------GVT---VSYFEWVQNIQGFMWEEEKVNH 313 (359)
Q Consensus 251 i-------~akiVvegAN~p~t~ea~~~L~~rGI~viPD~laNaG-------GVi---~s~~E~~~n~~~~~w~~e~v~~ 313 (359)
+ ++--|.=-.| -.+.-+.|.++|| +||+++--= |-+ .++-|+.+-+ .-+++++.+
T Consensus 216 ~~ea~~~~~~~SIg~~GN---~ad~~~~l~~~~i--~pDl~tDQTS~Hdp~~GY~P~g~t~eea~~l~---~~dp~~~~~ 287 (546)
T PF01175_consen 216 AKEARAKKEPLSIGLLGN---AADLWEELVERGI--IPDLVTDQTSAHDPLNGYYPAGLTFEEANELR---AEDPEEFKE 287 (546)
T ss_dssp HHHHHHTT--EEEEEES----HHHHHHHHHHTT-----SEE---SSTT-TTTS---TT--HHHHHHHH---HHSHHHHHH
T ss_pred HHHhhccCCeeEEEEecc---HHHHHHHHHHcCC--CCCcccCCCccccccccCCCCCCCHHHHHHHH---hhCHHHHHH
Confidence 0 1111222223 1233455777875 588765321 111 1222222211 125677888
Q ss_pred HHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHHHH
Q 018214 314 ELKRYMMSAFKDIKTMCQT------HNCNLRMGAFTLGVNR 348 (359)
Q Consensus 314 ~l~~~m~~~~~~v~~~a~~------~~~~~r~aA~~~A~~R 348 (359)
+.++.|.+-++.+++..++ ||-++|..|+..+++.
T Consensus 288 ~v~~Sl~rhv~Am~~~~~~G~~~fDYGN~~r~~a~~aG~~~ 328 (546)
T PF01175_consen 288 RVQESLARHVEAMLELQDRGAYFFDYGNNFRLEAFDAGVDE 328 (546)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-EE-B-SSSHHHHHHHTT-TT
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEecCchHHHHHHHcCcce
Confidence 8999999999999998875 7889999998876643
No 469
>PRK06484 short chain dehydrogenase; Validated
Probab=79.65 E-value=10 Score=39.13 Aligned_cols=34 Identities=26% Similarity=0.399 Sum_probs=28.9
Q ss_pred CCCCEEEEEec-cchHHHHHHHHHHCCCEEEeecCC
Q 018214 204 ISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 238 (359)
Q Consensus 204 l~g~~v~VqG~-G~VG~~~a~~L~~~GakvvavsD~ 238 (359)
.+++++.|.|. +.+|..+|+.|.++|++|+.+ +.
T Consensus 3 ~~~k~~lITGas~gIG~aia~~l~~~G~~V~~~-~r 37 (520)
T PRK06484 3 AQSRVVLVTGAAGGIGRAACQRFARAGDQVVVA-DR 37 (520)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHHCCCEEEEE-eC
Confidence 47899999995 679999999999999999844 44
No 470
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=79.57 E-value=2.4 Score=40.28 Aligned_cols=56 Identities=25% Similarity=0.242 Sum_probs=36.8
Q ss_pred EEEEEeccchHHHHHHHHHHCCCEEEeecCCCCCcccccccccccceEEEecCCCCCCHHHHHHHHhCCC
Q 018214 208 KFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGV 277 (359)
Q Consensus 208 ~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~~~~I~~~na~~i~akiVvegAN~p~t~ea~~~L~~rGI 277 (359)
.|+|.|.|..|..+|..|++.|.+|+ |-|.....-.. -+ -..+++.+-++|++-|+
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~-i~E~~~~~~~~-----~~--------~~~l~~~~~~~l~~lgl 58 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVT-IIERRPDPRPK-----GR--------GIGLSPNSLRILQRLGL 58 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEE-EEESSSSCCCS-----SS--------SEEEEHHHHHHHHHTTE
T ss_pred eEEEECCCHHHHHHHHHHHhcccccc-cchhccccccc-----cc--------ccccccccccccccccc
Confidence 68999999999999999999999987 66653221111 01 11245677777777664
No 471
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=79.53 E-value=3.3 Score=38.26 Aligned_cols=34 Identities=24% Similarity=0.282 Sum_probs=29.7
Q ss_pred CCCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeec
Q 018214 203 SISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVS 236 (359)
Q Consensus 203 ~l~g~~v~VqG-~G~VG~~~a~~L~~~Gakvvavs 236 (359)
.++++++.|.| .|-+|.++|+.|.+.|++|+.+.
T Consensus 4 ~l~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~ 38 (255)
T PRK06463 4 RFKGKVALITGGTRGIGRAIAEAFLREGAKVAVLY 38 (255)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEe
Confidence 36789999999 59999999999999999998443
No 472
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=79.43 E-value=2.3 Score=45.84 Aligned_cols=34 Identities=29% Similarity=0.289 Sum_probs=30.7
Q ss_pred CCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 205 SNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 205 ~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
.+++|+|.|.|..|..+|..|.+.|++|+ |.|..
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vt-v~e~~ 342 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVD-VFDRH 342 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEE-EEeCC
Confidence 69999999999999999999999999987 66654
No 473
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=79.42 E-value=2.1 Score=43.07 Aligned_cols=31 Identities=32% Similarity=0.370 Sum_probs=27.7
Q ss_pred CEEEEEeccchHHHHHHHHHHCCCEEEeecCC
Q 018214 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI 238 (359)
Q Consensus 207 ~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~ 238 (359)
..|+|.|.|+.|+.+|..|.+.|++|+ |-|.
T Consensus 4 ~DVvIVGaGPAGs~aA~~la~~G~~Vl-vlEk 34 (396)
T COG0644 4 YDVVIVGAGPAGSSAARRLAKAGLDVL-VLEK 34 (396)
T ss_pred eeEEEECCchHHHHHHHHHHHcCCeEE-EEec
Confidence 469999999999999999999999998 5555
No 474
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=79.39 E-value=3.6 Score=40.43 Aligned_cols=76 Identities=26% Similarity=0.284 Sum_probs=51.6
Q ss_pred CCCEEEEEeccchHHHHHHHHHHCCCE-EEeecCCC---------C--Ccccccc---ccc-------ccceEEEecCCC
Q 018214 205 SNMKFAIQGFGNVGSWAAKFFHEHGGK-VVAVSDIT---------G--GVLNKEN---AAD-------VKAKFIIEAANH 262 (359)
Q Consensus 205 ~g~~v~VqG~G~VG~~~a~~L~~~Gak-vvavsD~~---------~--~~I~~~n---a~~-------i~akiVvegAN~ 262 (359)
.|.+|.|.|.|.+|..+++.+...|++ |+++.... | .+|+..+ .+. -.+.+|++..-+
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid~~g~ 255 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVIDAVGR 255 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEEECCCC
Confidence 589999999999999999998999995 77553222 1 2233221 111 135688888876
Q ss_pred C-CCHHHHHHHHhCCCeEe
Q 018214 263 P-TDPEADEILSKKGVVIL 280 (359)
Q Consensus 263 p-~t~ea~~~L~~rGI~vi 280 (359)
+ .-.++-+.|+..|.+++
T Consensus 256 ~~~~~~~~~~~~~~G~iv~ 274 (358)
T TIGR03451 256 PETYKQAFYARDLAGTVVL 274 (358)
T ss_pred HHHHHHHHHHhccCCEEEE
Confidence 5 34566677888887664
No 475
>PRK05309 30S ribosomal protein S11; Validated
Probab=79.37 E-value=7 Score=33.79 Aligned_cols=60 Identities=18% Similarity=0.267 Sum_probs=46.9
Q ss_pred CCCchhHHHHHHHHHHHHH-HhCCCCCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 180 GREAATGLGVFFATEALLA-EHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 180 ~r~~aTg~Gv~~~~~~~~~-~~g~~l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
|....|-|....+.+.+.+ ....+++...|.|-|+|.=...+.+.|...|.+|+-|.|..
T Consensus 53 g~rK~T~~Aa~~aa~~~~~~~~~~gi~~v~v~ikG~G~Gr~~air~L~~~glkI~~I~D~T 113 (128)
T PRK05309 53 GSRKSTPYAAQVAAEDAAKKAKEHGMKTVEVFVKGPGSGRESAIRALQAAGLEVTSIKDVT 113 (128)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEEEEEcC
Confidence 4557787777777776666 33455788899999999866677788999999999999875
No 476
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=79.36 E-value=7.1 Score=39.23 Aligned_cols=32 Identities=34% Similarity=0.339 Sum_probs=27.8
Q ss_pred CEEEEEeccchHHHHHHHHHHC-CCEEEeecCC
Q 018214 207 MKFAIQGFGNVGSWAAKFFHEH-GGKVVAVSDI 238 (359)
Q Consensus 207 ~~v~VqG~G~VG~~~a~~L~~~-GakvvavsD~ 238 (359)
.||+|-|||.+|+.+.|.+.+. ...||+|-|.
T Consensus 3 ~kv~INGfGRIGR~v~R~~~~~~~~~ivaiNd~ 35 (342)
T PTZ00353 3 ITVGINGFGPVGKAVLFASLTDPLVTVVAVNDA 35 (342)
T ss_pred eEEEEECCChHHHHHHHHHHhcCCcEEEEecCC
Confidence 4899999999999999997654 6899999983
No 477
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=79.29 E-value=11 Score=37.14 Aligned_cols=51 Identities=18% Similarity=0.018 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCC
Q 018214 186 GLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI 238 (359)
Q Consensus 186 g~Gv~~~~~~~~~~~g~~l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~ 238 (359)
-+|..+.+..+.++ |. ..+++|+.-+.||-|..+|-.-...|.+++-+...
T Consensus 33 ~R~a~~~l~~a~~~-g~-~~~~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~ 83 (316)
T cd06448 33 IRGIGHLCQKSAKQ-GL-NECVHVVCSSGGNAGLAAAYAARKLGVPCTIVVPE 83 (316)
T ss_pred HHHHHHHHHHHHHh-hc-ccCCeEEEeCCcHHHHHHHHHHHHcCCCEEEEECC
Confidence 35666666665542 22 34677888888999999888777888877655444
No 478
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=79.28 E-value=11 Score=33.77 Aligned_cols=75 Identities=17% Similarity=0.223 Sum_probs=47.6
Q ss_pred EEEEe-ccchHHHHHHHHHHCCCEEEeecCCCCCcccccccccccceEEEecCCCCCCHHHHHHHHhCCCeEeccccccc
Q 018214 209 FAIQG-FGNVGSWAAKFFHEHGGKVVAVSDITGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANS 287 (359)
Q Consensus 209 v~VqG-~G~VG~~~a~~L~~~GakvvavsD~~~~~I~~~na~~i~akiVvegAN~p~t~ea~~~L~~rGI~viPD~laNa 287 (359)
|.|.| .|-+|+++++.|.+.|..|+.++.......... .+.++...-.|.--...-++++.+. -||.+.+.
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~----~~~~~~~~~~dl~~~~~~~~~~~~~----~~d~vi~~ 72 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGHEVIVLSRSSNSESFEE----KKLNVEFVIGDLTDKEQLEKLLEKA----NIDVVIHL 72 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTEEEEEESCSTGGHHHH----HHTTEEEEESETTSHHHHHHHHHHH----TESEEEEE
T ss_pred EEEEccCCHHHHHHHHHHHHcCCcccccccccccccccc----ccceEEEEEeecccccccccccccc----CceEEEEe
Confidence 56777 799999999999999999886765532111100 0114444445544223445666666 67778888
Q ss_pred cCcc
Q 018214 288 GGVT 291 (359)
Q Consensus 288 GGVi 291 (359)
++..
T Consensus 73 a~~~ 76 (236)
T PF01370_consen 73 AAFS 76 (236)
T ss_dssp BSSS
T ss_pred eccc
Confidence 7764
No 479
>PTZ00367 squalene epoxidase; Provisional
Probab=79.23 E-value=8.3 Score=41.25 Aligned_cols=74 Identities=19% Similarity=0.210 Sum_probs=49.5
Q ss_pred HHHHHHHHHhCCCC----CCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCCCCcccccccccccceEEEecCCCCCCH
Q 018214 191 FATEALLAEHGKSI----SNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGGVLNKENAADVKAKFIIEAANHPTDP 266 (359)
Q Consensus 191 ~~~~~~~~~~g~~l----~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~~~~I~~~na~~i~akiVvegAN~p~t~ 266 (359)
..+..++.+.-... ....|+|.|.|.+|..+|..|.+.|.+|+ |-|.+. ..+ .+ +.+.| .++|
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~dViIVGaGiaGlalA~aLar~G~~V~-VlEr~~--~~~--~~----r~~G~----~L~p 80 (567)
T PTZ00367 14 LLLNRILSRLRFKPARTNYDYDVIIVGGSIAGPVLAKALSKQGRKVL-MLERDL--FSK--PD----RIVGE----LLQP 80 (567)
T ss_pred HHHHHHHHHHccCccccccCccEEEECCCHHHHHHHHHHHhcCCEEE-EEcccc--ccc--cc----hhhhh----hcCH
Confidence 34455555332221 45689999999999999999999999987 655532 111 01 22222 2688
Q ss_pred HHHHHHHhCCC
Q 018214 267 EADEILSKKGV 277 (359)
Q Consensus 267 ea~~~L~~rGI 277 (359)
.+.++|++-|+
T Consensus 81 ~g~~~L~~LGL 91 (567)
T PTZ00367 81 GGVNALKELGM 91 (567)
T ss_pred HHHHHHHHCCC
Confidence 88999999886
No 480
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=79.23 E-value=6.2 Score=40.40 Aligned_cols=30 Identities=30% Similarity=0.439 Sum_probs=27.1
Q ss_pred EEEEeccchHHH-HHHHHHHCCCEEEeecCCC
Q 018214 209 FAIQGFGNVGSW-AAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 209 v~VqG~G~VG~~-~a~~L~~~GakvvavsD~~ 239 (359)
+.+.|.|..|.. +|++|+++|++|+ ++|.+
T Consensus 2 ~~~iGiggsGm~~la~~L~~~G~~v~-~~D~~ 32 (448)
T TIGR01082 2 IHFVGIGGIGMSGIAEILLNRGYQVS-GSDIA 32 (448)
T ss_pred EEEEEECHHHHHHHHHHHHHCCCeEE-EECCC
Confidence 678999999998 9999999999998 88964
No 481
>PRK05993 short chain dehydrogenase; Provisional
Probab=79.22 E-value=2.8 Score=39.53 Aligned_cols=31 Identities=23% Similarity=0.446 Sum_probs=27.5
Q ss_pred CCCEEEEEec-cchHHHHHHHHHHCCCEEEee
Q 018214 205 SNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAV 235 (359)
Q Consensus 205 ~g~~v~VqG~-G~VG~~~a~~L~~~Gakvvav 235 (359)
.+++|.|.|. |.+|.++|+.|++.|++|+.+
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~ 34 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDGWRVFAT 34 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence 3678999996 999999999999999999844
No 482
>PRK07538 hypothetical protein; Provisional
Probab=79.20 E-value=4.1 Score=40.96 Aligned_cols=57 Identities=30% Similarity=0.250 Sum_probs=41.2
Q ss_pred CEEEEEeccchHHHHHHHHHHCCCEEEeecCCCCCcccccccccccceEEEecCCCCCCHHHHHHHHhCCC
Q 018214 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGV 277 (359)
Q Consensus 207 ~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~~~~I~~~na~~i~akiVvegAN~p~t~ea~~~L~~rGI 277 (359)
++|+|.|.|..|..+|..|++.|.+|+ |-|.... +.+ .|.-..++|.+-++|.+-|+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~-v~E~~~~-~~~------------~g~gi~l~p~~~~~L~~lgl 57 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVV-VFEAAPE-LRP------------LGVGINLLPHAVRELAELGL 57 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEE-EEEcCCc-ccc------------cCcceeeCchHHHHHHHCCC
Confidence 369999999999999999999999987 6665321 111 13334467777777777765
No 483
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=79.11 E-value=5.4 Score=39.42 Aligned_cols=104 Identities=24% Similarity=0.262 Sum_probs=69.2
Q ss_pred CchhHHHHHHHHH-HHHHH-hCCCCCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeecCCC---------CC--cccc--
Q 018214 182 EAATGLGVFFATE-ALLAE-HGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDIT---------GG--VLNK-- 245 (359)
Q Consensus 182 ~~aTg~Gv~~~~~-~~~~~-~g~~l~g~~v~VqG-~G~VG~~~a~~L~~~GakvvavsD~~---------~~--~I~~-- 245 (359)
.++..+++...+- .++.. .+... |.+|.|+| .|.||..+.+++..+|+.+|+++.++ |. +|+-
T Consensus 118 ~eAAal~~~~~TA~~~l~~~~~l~~-g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd~vi~y~~ 196 (326)
T COG0604 118 EEAAALPLAGLTAWLALFDRAGLKP-GETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADHVINYRE 196 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCC-CCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCCEEEcCCc
Confidence 3555565544332 23333 22333 89999999 89999999999999997665555443 22 5551
Q ss_pred c-ccccc-------cceEEEecCCCCCCHHHHHHHHhCCCeEecccccc
Q 018214 246 E-NAADV-------KAKFIIEAANHPTDPEADEILSKKGVVILPDIYAN 286 (359)
Q Consensus 246 ~-na~~i-------~akiVvegAN~p~t~ea~~~L~~rGI~viPD~laN 286 (359)
+ -++++ ...+|.+.-.+++-.+.-+.|...|.++.-.....
T Consensus 197 ~~~~~~v~~~t~g~gvDvv~D~vG~~~~~~~l~~l~~~G~lv~ig~~~g 245 (326)
T COG0604 197 EDFVEQVRELTGGKGVDVVLDTVGGDTFAASLAALAPGGRLVSIGALSG 245 (326)
T ss_pred ccHHHHHHHHcCCCCceEEEECCCHHHHHHHHHHhccCCEEEEEecCCC
Confidence 1 13333 37889998888877778888999998887665543
No 484
>PRK08589 short chain dehydrogenase; Validated
Probab=79.09 E-value=3.1 Score=39.08 Aligned_cols=34 Identities=32% Similarity=0.418 Sum_probs=29.8
Q ss_pred CCCCEEEEEec-cchHHHHHHHHHHCCCEEEeecCC
Q 018214 204 ISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 238 (359)
Q Consensus 204 l~g~~v~VqG~-G~VG~~~a~~L~~~GakvvavsD~ 238 (359)
++++++.|.|. +-+|.++|+.|.+.|++|+.+ +.
T Consensus 4 l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~-~r 38 (272)
T PRK08589 4 LENKVAVITGASTGIGQASAIALAQEGAYVLAV-DI 38 (272)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE-eC
Confidence 67899999995 889999999999999999844 44
No 485
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=79.06 E-value=3.2 Score=38.38 Aligned_cols=34 Identities=35% Similarity=0.385 Sum_probs=29.7
Q ss_pred CCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeecCC
Q 018214 204 ISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDI 238 (359)
Q Consensus 204 l~g~~v~VqG-~G~VG~~~a~~L~~~GakvvavsD~ 238 (359)
+++++|.|.| .|.+|.++++.|.++|++|+ +.+.
T Consensus 9 l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv-~~~r 43 (255)
T PRK06113 9 LDGKCAIITGAGAGIGKEIAITFATAGASVV-VSDI 43 (255)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCeEE-EEeC
Confidence 6799999998 58999999999999999998 4444
No 486
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=79.05 E-value=2.4 Score=41.59 Aligned_cols=32 Identities=25% Similarity=0.300 Sum_probs=29.0
Q ss_pred EEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 208 KFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 208 ~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
+|.|.|.|.+|..+++.|...|..=+.+.|.|
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D 32 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMD 32 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 58999999999999999999998777788887
No 487
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=79.05 E-value=3.2 Score=38.90 Aligned_cols=37 Identities=30% Similarity=0.284 Sum_probs=31.3
Q ss_pred CCCCCCEEEEEec-cchHHHHHHHHHHCCCEEEeecCCC
Q 018214 202 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 202 ~~l~g~~v~VqG~-G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
.+++++++.|.|. |.+|+++++.|.+.|++|+ +.+.+
T Consensus 6 ~~~~~k~vlVtGas~giG~~ia~~l~~~G~~V~-~~~r~ 43 (278)
T PRK08277 6 FSLKGKVAVITGGGGVLGGAMAKELARAGAKVA-ILDRN 43 (278)
T ss_pred eccCCCEEEEeCCCchHHHHHHHHHHHCCCEEE-EEeCC
Confidence 3578999999995 8999999999999999988 44543
No 488
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=79.02 E-value=3 Score=39.17 Aligned_cols=33 Identities=15% Similarity=0.281 Sum_probs=28.7
Q ss_pred CCCCEEEEEec---cchHHHHHHHHHHCCCEEEeecC
Q 018214 204 ISNMKFAIQGF---GNVGSWAAKFFHEHGGKVVAVSD 237 (359)
Q Consensus 204 l~g~~v~VqG~---G~VG~~~a~~L~~~GakvvavsD 237 (359)
++++++.|.|. +-+|.++|+.|.+.|++|+ +.+
T Consensus 4 l~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~-~~~ 39 (260)
T PRK06997 4 LAGKRILITGLLSNRSIAYGIAKACKREGAELA-FTY 39 (260)
T ss_pred cCCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEE-EEc
Confidence 67899999994 5799999999999999998 443
No 489
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=79.01 E-value=2.4 Score=43.07 Aligned_cols=31 Identities=35% Similarity=0.469 Sum_probs=28.0
Q ss_pred EEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 208 KFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 208 ~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
+|.|.|.|.||..+|..|.+.|.+|+ +.|.+
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~-~~d~~ 32 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVT-GVDID 32 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEE-EEECC
Confidence 69999999999999999999999998 45766
No 490
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=78.99 E-value=2.4 Score=43.36 Aligned_cols=32 Identities=25% Similarity=0.375 Sum_probs=29.1
Q ss_pred CEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 207 ~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
++|+|.|.|.||..+|..|.+.|..|+ +.|.+
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~-~~D~~ 35 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVI-GVDIN 35 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEE-EEeCC
Confidence 689999999999999999999999998 55766
No 491
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=78.97 E-value=5.8 Score=39.68 Aligned_cols=60 Identities=25% Similarity=0.276 Sum_probs=41.7
Q ss_pred CEEEEEeccchHHHHHHHHHHCCCEEEeecCCCC--CcccccccccccceEEEecCCCCCCHHHHHHHHhCCC
Q 018214 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITG--GVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGV 277 (359)
Q Consensus 207 ~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~~--~~I~~~na~~i~akiVvegAN~p~t~ea~~~L~~rGI 277 (359)
.+|+|.|.|.+|..+|..|.+.|.+|+ |-|... ..+.+ .+. .|. ..+++.+-++|++-|+
T Consensus 5 ~dV~IvGaG~~Gl~~A~~L~~~G~~v~-viE~~~~~~~~~~--~~~--~r~------~~l~~~~~~~L~~lGl 66 (405)
T PRK08850 5 VDVAIIGGGMVGLALAAALKESDLRIA-VIEGQLPEEALNE--LPD--VRV------SALSRSSEHILRNLGA 66 (405)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCEEE-EEcCCCCcccccC--CCC--cce------ecccHHHHHHHHhCCc
Confidence 579999999999999999999999987 666521 11111 011 111 1367888899998886
No 492
>PRK05854 short chain dehydrogenase; Provisional
Probab=78.92 E-value=3.2 Score=40.25 Aligned_cols=33 Identities=18% Similarity=0.280 Sum_probs=29.3
Q ss_pred CCCCCEEEEEe-ccchHHHHHHHHHHCCCEEEee
Q 018214 203 SISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAV 235 (359)
Q Consensus 203 ~l~g~~v~VqG-~G~VG~~~a~~L~~~Gakvvav 235 (359)
+++|++++|.| .+-+|.++|+.|.+.|++|+.+
T Consensus 11 ~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~ 44 (313)
T PRK05854 11 DLSGKRAVVTGASDGLGLGLARRLAAAGAEVILP 44 (313)
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEE
Confidence 47899999999 5789999999999999999844
No 493
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=78.91 E-value=2.5 Score=42.28 Aligned_cols=32 Identities=28% Similarity=0.275 Sum_probs=28.4
Q ss_pred CEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 207 ~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
++|+|.|.|-+|..+|..|++.|.+|+ |-|..
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~-vle~~ 33 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVT-VFDRH 33 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEE-EEeCC
Confidence 479999999999999999999999987 66663
No 494
>PRK09242 tropinone reductase; Provisional
Probab=78.90 E-value=3.2 Score=38.34 Aligned_cols=33 Identities=24% Similarity=0.288 Sum_probs=29.3
Q ss_pred CCCCCEEEEEe-ccchHHHHHHHHHHCCCEEEee
Q 018214 203 SISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAV 235 (359)
Q Consensus 203 ~l~g~~v~VqG-~G~VG~~~a~~L~~~Gakvvav 235 (359)
.+++|++.|.| .|.+|..+++.|.+.|++|+.+
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~ 39 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGADVLIV 39 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEE
Confidence 46899999999 5899999999999999999844
No 495
>PRK06475 salicylate hydroxylase; Provisional
Probab=78.89 E-value=4.5 Score=40.47 Aligned_cols=57 Identities=26% Similarity=0.212 Sum_probs=42.9
Q ss_pred CEEEEEeccchHHHHHHHHHHCCCEEEeecCCCCCcccccccccccceEEEecCCCCCCHHHHHHHHhCCC
Q 018214 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGV 277 (359)
Q Consensus 207 ~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~~~~I~~~na~~i~akiVvegAN~p~t~ea~~~L~~rGI 277 (359)
++|+|.|.|..|..+|..|.+.|.+|. |-|... .+.+ .|+-..++|.+.++|.+-|+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~-i~E~~~-~~~~------------~g~gi~l~~~~~~~L~~~Gl 59 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVT-IIEKAQ-ELSE------------VGAGLQLAPNAMRHLERLGV 59 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEE-EEecCC-ccCc------------CCccceeChhHHHHHHHCCC
Confidence 579999999999999999999999987 655521 1111 23444568889999988886
No 496
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=78.87 E-value=13 Score=36.02 Aligned_cols=77 Identities=19% Similarity=0.305 Sum_probs=53.2
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCC-----------CCcccccccc-----cccceEEEecCCCCC-CH
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT-----------GGVLNKENAA-----DVKAKFIIEAANHPT-DP 266 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~-----------~~~I~~~na~-----~i~akiVvegAN~p~-t~ 266 (359)
-.|.+|.|.|.|.+|..+++.+...|++|+.+++.. ..+++..+-. .-.+.+|++....+. ..
T Consensus 168 ~~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~d~v~~~~g~~~~~~ 247 (337)
T cd05283 168 GPGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGADEFIATKDPEAMKKAAGSLDLIIDTVSASHDLD 247 (337)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEecCcchhhhhhccCCceEEEECCCCcchHH
Confidence 468899999999999999999999999998665443 1123322211 123568888776663 56
Q ss_pred HHHHHHHhCCCeEe
Q 018214 267 EADEILSKKGVVIL 280 (359)
Q Consensus 267 ea~~~L~~rGI~vi 280 (359)
++-+.|...|..+.
T Consensus 248 ~~~~~l~~~G~~v~ 261 (337)
T cd05283 248 PYLSLLKPGGTLVL 261 (337)
T ss_pred HHHHHhcCCCEEEE
Confidence 67778888886654
No 497
>PRK06126 hypothetical protein; Provisional
Probab=78.84 E-value=4.1 Score=42.64 Aligned_cols=59 Identities=20% Similarity=0.223 Sum_probs=41.3
Q ss_pred CCCEEEEEeccchHHHHHHHHHHCCCEEEeecCCCCCcccccccccccceEEEecCCCCCCHHHHHHHHhCCC
Q 018214 205 SNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGV 277 (359)
Q Consensus 205 ~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~~~~I~~~na~~i~akiVvegAN~p~t~ea~~~L~~rGI 277 (359)
....|+|.|.|.+|..+|..|.++|.+|+ |-|..... . . .+....+++..-++|++-|+
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La~~G~~v~-viEr~~~~-~----~--------~~ra~~l~~r~~e~L~~lGl 64 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLGRRGVDSI-LVERKDGT-A----F--------NPKANTTSARSMEHFRRLGI 64 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEE-EEeCCCCC-C----C--------CCccccCCHHHHHHHHhcCh
Confidence 34679999999999999999999999988 66653211 1 0 01223367777777777664
No 498
>PRK12831 putative oxidoreductase; Provisional
Probab=78.80 E-value=2.7 Score=43.54 Aligned_cols=34 Identities=24% Similarity=0.214 Sum_probs=30.6
Q ss_pred CCCCEEEEEeccchHHHHHHHHHHCCCEEEeecCC
Q 018214 204 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI 238 (359)
Q Consensus 204 l~g~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~ 238 (359)
-.+++|+|.|.|..|..+|.+|.++|++|+ |-|.
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~-v~e~ 171 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVT-IFEA 171 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEE-EEec
Confidence 368999999999999999999999999987 6664
No 499
>PRK07985 oxidoreductase; Provisional
Probab=78.76 E-value=3.3 Score=39.74 Aligned_cols=33 Identities=24% Similarity=0.346 Sum_probs=29.5
Q ss_pred CCCCEEEEEe-ccchHHHHHHHHHHCCCEEEeecC
Q 018214 204 ISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSD 237 (359)
Q Consensus 204 l~g~~v~VqG-~G~VG~~~a~~L~~~GakvvavsD 237 (359)
++++++.|.| .|.+|.++|+.|.+.|++|+ +.+
T Consensus 47 ~~~k~vlITGas~gIG~aia~~L~~~G~~Vi-~~~ 80 (294)
T PRK07985 47 LKDRKALVTGGDSGIGRAAAIAYAREGADVA-ISY 80 (294)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHCCCEEE-Eec
Confidence 7899999999 48999999999999999998 444
No 500
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=78.76 E-value=2.8 Score=40.29 Aligned_cols=32 Identities=31% Similarity=0.377 Sum_probs=28.4
Q ss_pred CEEEEEeccchHHHHHHHHHHCCCEEEeecCCC
Q 018214 207 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 239 (359)
Q Consensus 207 ~~v~VqG~G~VG~~~a~~L~~~GakvvavsD~~ 239 (359)
++|.|.|+|.+|...|+.|.+.|.+|+ +.|.+
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~-~~d~~ 34 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLV-VYDRN 34 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEE-EEcCC
Confidence 479999999999999999999999987 56765
Done!