Query 018215
Match_columns 359
No_of_seqs 210 out of 723
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 11:44:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018215.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018215hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 100.0 6.9E-35 2.4E-39 231.4 6.0 67 280-347 9-75 (76)
2 1wj2_A Probable WRKY transcrip 100.0 9.7E-35 3.3E-39 231.5 5.3 67 280-347 12-78 (78)
3 2rpr_A Flywch-type zinc finger 69.0 1.9 6.6E-05 33.4 1.7 48 286-346 25-74 (87)
4 1xiw_B T-cell surface glycopro 45.2 13 0.00045 28.7 2.7 49 286-343 17-75 (79)
5 1xiw_A T-cell surface glycopro 31.6 9.9 0.00034 31.6 -0.0 28 285-312 32-78 (105)
6 1cz6_A Protein (androctonin); 23.6 18 0.00062 22.8 0.1 7 307-313 16-22 (26)
7 2vsd_A CHIR AB1; immune system 15.2 25 0.00084 26.8 -0.8 35 307-344 69-103 (105)
8 2v9t_A Roundabout homolog 1; s 12.9 65 0.0022 24.0 1.1 31 307-343 85-115 (117)
9 2lv4_A Putative outer membrane 9.5 2.8E+02 0.0094 24.1 3.9 21 317-342 101-123 (146)
10 1xnl_A ASLV/FP, membrane prote 8.8 1.9E+02 0.0066 18.8 2.0 13 29-41 16-28 (29)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=100.00 E-value=6.9e-35 Score=231.36 Aligned_cols=67 Identities=58% Similarity=1.125 Sum_probs=63.6
Q ss_pred CCCCCCCCCccccccCCcccCCCCCCccccccCCCCCCCcccceeecCCCCCEEEEEeeecCCCCCCC
Q 018215 280 KMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPMMLIVTYEGDHNHAFAV 347 (359)
Q Consensus 280 ~~~di~~DgysWRKYGQK~Ikgsp~PRsYYrCs~~~gC~a~K~Vqr~~dDp~~~~vTY~G~H~h~~~~ 347 (359)
...++++|||+|||||||.|||++|||+||||++ .||+|+|+|||+++||.+|+|||+|+|||+.|.
T Consensus 9 ~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~-~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 75 (76)
T 2ayd_A 9 TLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSS-PGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP 75 (76)
T ss_dssp CSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECS-TTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred CCCCcCCCCchhhhCcccccCCCCCceeEeEcCC-CCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence 3578899999999999999999999999999996 799999999999999999999999999999875
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=100.00 E-value=9.7e-35 Score=231.48 Aligned_cols=67 Identities=55% Similarity=1.080 Sum_probs=63.5
Q ss_pred CCCCCCCCCccccccCCcccCCCCCCccccccCCCCCCCcccceeecCCCCCEEEEEeeecCCCCCCC
Q 018215 280 KMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPMMLIVTYEGDHNHAFAV 347 (359)
Q Consensus 280 ~~~di~~DgysWRKYGQK~Ikgsp~PRsYYrCs~~~gC~a~K~Vqr~~dDp~~~~vTY~G~H~h~~~~ 347 (359)
...++++|||+|||||||.|||++|||+||||++ +||+|+|+|||+.+|+.+++|||+|+|||+.|.
T Consensus 12 s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~-~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 78 (78)
T 1wj2_A 12 SEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT-PGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA 78 (78)
T ss_dssp CCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEEC-SSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred CCCCcCCCCchhhhCcccccCCCcCeeEEeecCc-CCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence 4568899999999999999999999999999996 899999999999999999999999999999873
No 3
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=69.03 E-value=1.9 Score=33.43 Aligned_cols=48 Identities=19% Similarity=0.381 Sum_probs=30.7
Q ss_pred CCCccccccCCcccCCCCCCccccccCC--CCCCCcccceeecCCCCCEEEEEeeecCCCCCC
Q 018215 286 PDDYSWRKYGQKPIKGSPHPRGYYKCSS--VRGCPARKHVERALDDPMMLIVTYEGDHNHAFA 346 (359)
Q Consensus 286 ~DgysWRKYGQK~Ikgsp~PRsYYrCs~--~~gC~a~K~Vqr~~dDp~~~~vTY~G~H~h~~~ 346 (359)
-|||...+--+ .-.+.|.+|+. ..+|+|+=.... ++ + ...+.|||++.
T Consensus 25 ~~Gy~Y~~~~~------~~~~~yWrC~~~~~~kCrARi~T~~--~~---~--~~~~~HnH~p~ 74 (87)
T 2rpr_A 25 HESFLYRKEKA------AGEKVYWMCRDQARLGCRSRAITQG--HR---I--MVMRSHCHQPD 74 (87)
T ss_dssp ETTEEEEEEEE------CSSCEEEEEGGGTTSCCCCEEEEET--TE---E--EECSCCSSCCC
T ss_pred ECCEEEEeeec------CCCcEEEEecCCCCCCCCEEEEEcC--CC---E--ECCCCcCCCCc
Confidence 48887775321 12368999995 358999865442 22 2 25688999753
No 4
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=45.25 E-value=13 Score=28.68 Aligned_cols=49 Identities=18% Similarity=0.328 Sum_probs=26.6
Q ss_pred CCCccccccCCcc--------cCCC--CCCccccccCCCCCCCcccceeecCCCCCEEEEEeeecCCC
Q 018215 286 PDDYSWRKYGQKP--------IKGS--PHPRGYYKCSSVRGCPARKHVERALDDPMMLIVTYEGDHNH 343 (359)
Q Consensus 286 ~DgysWRKYGQK~--------Ikgs--p~PRsYYrCs~~~gC~a~K~Vqr~~dDp~~~~vTY~G~H~h 343 (359)
.+++.|-|-|... ++|+ .-|||||.|... +.+.. ....|.|-|.=.+||
T Consensus 17 ~~~i~W~k~~~~i~~~~~~tL~L~~~~~d~sG~Y~C~~~------~~~~~---~~s~LqV~yR~C~NC 75 (79)
T 1xiw_B 17 NTSITWVEGTVGTLLSDITRLDLGKRILDPRGIYRCNGT------DIYKD---KESTVQVHYRMCQSC 75 (79)
T ss_dssp SSCEEEEEECCCEEEGGGTEEEEEEGGGCCEEEEEEC-----------------CEEEEEEEECSCC-
T ss_pred CCCEEEEECCcccccccCCeEEeccCcCCCCeEEEecCC------CCCCc---ccEEEEEEhhhcCCc
Confidence 4668899988652 3322 239999999521 11110 002466778777766
No 5
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=31.62 E-value=9.9 Score=31.57 Aligned_cols=28 Identities=21% Similarity=0.501 Sum_probs=20.1
Q ss_pred CCCCccccccCCcc----------------cCCCCC---CccccccC
Q 018215 285 PPDDYSWRKYGQKP----------------IKGSPH---PRGYYKCS 312 (359)
Q Consensus 285 ~~DgysWRKYGQK~----------------Ikgsp~---PRsYYrCs 312 (359)
+.+...|-|-|+.. ++++-- ||+||.|.
T Consensus 32 ~~~~I~W~k~~~~i~~~~~~~~~~~~~~~L~L~~~~~~d~sG~Y~C~ 78 (105)
T 1xiw_A 32 PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCY 78 (105)
T ss_dssp TTSCEEEEETTEEESSSCSCTTEEEETTEEEETTCCHHHHCEEEEEE
T ss_pred CCCceEEEeCCccccccccccccccCCCeEEeccccccCCCceEEEc
Confidence 44668888888652 446644 99999996
No 6
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=23.56 E-value=18 Score=22.79 Aligned_cols=7 Identities=57% Similarity=1.459 Sum_probs=6.0
Q ss_pred cccccCC
Q 018215 307 GYYKCSS 313 (359)
Q Consensus 307 sYYrCs~ 313 (359)
.||||++
T Consensus 16 cyykctn 22 (26)
T 1cz6_A 16 CYYKCTN 22 (26)
T ss_dssp CEEEECC
T ss_pred eEEEccC
Confidence 5999996
No 7
>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN; 1.82A {Gallus gallus}
Probab=15.21 E-value=25 Score=26.78 Aligned_cols=35 Identities=34% Similarity=0.606 Sum_probs=16.2
Q ss_pred cccccCCCCCCCcccceeecCCCCCEEEEEeeecCCCC
Q 018215 307 GYYKCSSVRGCPARKHVERALDDPMMLIVTYEGDHNHA 344 (359)
Q Consensus 307 sYYrCs~~~gC~a~K~Vqr~~dDp~~~~vTY~G~H~h~ 344 (359)
|-|+|....+-+ .+.-..-||..|.|+|.+.|.|.
T Consensus 69 G~Y~C~~~n~~~---~~~s~~Sdpl~L~V~~~~~~~~~ 103 (105)
T 2vsd_A 69 GTYQCRYQVSEP---LWTSNQSDPVELVLTIEGRHHHH 103 (105)
T ss_dssp EEEEEEEEEETT---EEECCCCCCEEECCC--------
T ss_pred eEEEEEEEcCCC---CcccCCCCCEEEEEEEecccccc
Confidence 789997311111 12223568999999999999875
No 8
>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}
Probab=12.93 E-value=65 Score=23.99 Aligned_cols=31 Identities=32% Similarity=0.524 Sum_probs=12.6
Q ss_pred cccccCCCCCCCcccceeecCCCCCEEEEEeeecCCC
Q 018215 307 GYYKCSSVRGCPARKHVERALDDPMMLIVTYEGDHNH 343 (359)
Q Consensus 307 sYYrCs~~~gC~a~K~Vqr~~dDp~~~~vTY~G~H~h 343 (359)
+.|.|. |...+-........+.+.|+-+|-|
T Consensus 85 G~Y~C~------a~N~~G~~~s~~~~l~~~~~~~~~~ 115 (117)
T 2v9t_A 85 GVYVCV------ARNYLGEAVSHDASLEVAAAAHHHH 115 (117)
T ss_dssp EEEEEE------EEETTEEEECCCEEEEEC-------
T ss_pred EEEEEE------EEeCccceEeeeEEEEhhhhhhhhc
Confidence 455554 3344444445555666666666654
No 9
>2lv4_A Putative outer membrane or exported protein; antivirulence, adhesion, protein binding; NMR {Salmonella enterica subsp}
Probab=9.47 E-value=2.8e+02 Score=24.06 Aligned_cols=21 Identities=33% Similarity=0.588 Sum_probs=13.5
Q ss_pred CCcccceeecCCCCCEE--EEEeeecCC
Q 018215 317 CPARKHVERALDDPMML--IVTYEGDHN 342 (359)
Q Consensus 317 C~a~K~Vqr~~dDp~~~--~vTY~G~H~ 342 (359)
|+++| ...|..| +|||.|.|+
T Consensus 101 g~~Kk-----g~~PGeY~q~iTY~G~s~ 123 (146)
T 2lv4_A 101 GPLKK-----ENVPGKYTQVITYRGHSN 123 (146)
T ss_dssp CCCEE-----CSSSSEEEEEEEEETTCC
T ss_pred cceec-----CCCCcceEEEEEEcCCCC
Confidence 56655 3444444 689999886
No 10
>1xnl_A ASLV/FP, membrane protein GP37; fusion protein, virus entry, membrane fusion, viral protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=8.77 E-value=1.9e+02 Score=18.76 Aligned_cols=13 Identities=23% Similarity=0.447 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHH
Q 018215 29 AASEGMQSIGEFI 41 (359)
Q Consensus 29 AAsAGLeS~e~LI 41 (359)
||+++|+-+|+|.
T Consensus 16 aAAqAL~eIERLa 28 (29)
T 1xnl_A 16 AAAQALREIERLA 28 (29)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhc
Confidence 5677999999984
Done!