BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018216
(359 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BO5|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human
Histone-Lysine N-Methyltransferase Setmar
Length = 290
Score = 107 bits (268), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 102/187 (54%), Gaps = 35/187 (18%)
Query: 195 NRLTQRGISVRLKIVRSVNKGWGLYADQFIKQGQFIC----ELLTTKEARRRQQIYDGLA 250
NR+ Q+G+ ++ ++ KGWGL +FI +G+F+C E+L E +RR +
Sbjct: 117 NRVVQKGLQFHFQVFKTHKKGWGLRTLEFIPKGRFVCEYAGEVLGFSEVQRRIHL----- 171
Query: 251 SSPRNSSALLVIREHLPSGKACLRMNIDATRIGNIARFINHSCDGGNLSTTLVRSSGSIL 310
+ +S+ ++ IREH+ +G+ + +D T IGNI RF+NHSC+ NL VR S++
Sbjct: 172 QTKSDSNYIIAIREHVYNGQV-METFVDPTYIGNIGRFLNHSCE-PNLLMIPVRID-SMV 228
Query: 311 PRLCFFASKDIKEGEELAFSY------------------GEIRARPRGLPCYCGSTSCFG 352
P+L FA+KDI EEL++ Y G++R PCYCG+ SC
Sbjct: 229 PKLALFAAKDIVPEEELSYDYSGRYLNLTVSASKERLDHGKLRK-----PCYCGAKSCTA 283
Query: 353 ILPSENT 359
LP +++
Sbjct: 284 FLPFDSS 290
>pdb|2O8J|A Chain A, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|B Chain B, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|C Chain C, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|D Chain D, Human Euchromatic Histone Methyltransferase 2
Length = 281
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 79/159 (49%), Gaps = 15/159 (9%)
Query: 195 NRLTQRGISVRLKIVRSVNKGWGLYADQFIKQGQFICELLTTKEARRRQQIYDGLASSPR 254
NR+ Q GI VRL++ R+ GWG+ A Q I QG FICE + + I D A
Sbjct: 117 NRVVQSGIKVRLQLYRTAKMGWGVRALQTIPQGTFICEYVG-------ELISDAEADVRE 169
Query: 255 NSSALLVIREHLPSGKACLRMNIDATRIGNIARFINHSCDGGNLSTTLVRSSGSI-LPRL 313
+ S L + K IDA GNI+RFINH CD + + + PR+
Sbjct: 170 DDSYLFDL-----DNKDGEVYCIDARYYGNISRFINHLCDPNIIPVRVFMLHQDLRFPRI 224
Query: 314 CFFASKDIKEGEELAFSYGE--IRARPRGLPCYCGSTSC 350
FF+S+DI+ GEEL F YG+ + + C CGS C
Sbjct: 225 AFFSSRDIRTGEELGFDYGDRFWDIKSKYFTCQCGSEKC 263
>pdb|3K5K|A Chain A, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
Potent Inhibitor Of Histone Lysine Methyltransferase,
G9a
pdb|3K5K|B Chain B, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
Potent Inhibitor Of Histone Lysine Methyltransferase,
G9a
pdb|3RJW|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase G9a
With An Inhibitor
pdb|3RJW|B Chain B, Crystal Structure Of Histone Lysine Methyltransferase G9a
With An Inhibitor
Length = 283
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 79/159 (49%), Gaps = 15/159 (9%)
Query: 195 NRLTQRGISVRLKIVRSVNKGWGLYADQFIKQGQFICELLTTKEARRRQQIYDGLASSPR 254
NR+ Q GI VRL++ R+ GWG+ A Q I QG FICE + + I D A
Sbjct: 119 NRVVQSGIKVRLQLYRTAKMGWGVRALQTIPQGTFICEYVG-------ELISDAEADVRE 171
Query: 255 NSSALLVIREHLPSGKACLRMNIDATRIGNIARFINHSCDGGNLSTTLVRSSGSI-LPRL 313
+ S L + K IDA GNI+RFINH CD + + + PR+
Sbjct: 172 DDSYLFDL-----DNKDGEVYCIDARYYGNISRFINHLCDPNIIPVRVFMLHQDLRFPRI 226
Query: 314 CFFASKDIKEGEELAFSYGE--IRARPRGLPCYCGSTSC 350
FF+S+DI+ GEEL F YG+ + + C CGS C
Sbjct: 227 AFFSSRDIRTGEELGFDYGDRFWDIKSKYFTCQCGSEKC 265
>pdb|2R3A|A Chain A, Methyltransferase Domain Of Human Suppressor Of
Variegation 3-9 Homolog 2
Length = 300
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 87/181 (48%), Gaps = 33/181 (18%)
Query: 195 NRLTQRGISVRLKIVRSVN-KGWGLYADQFIKQGQFICE----LLTTKEARRRQQIYDGL 249
NR+ Q+G L I R+ N +GWG+ IK+ F+ E ++T++EA RR Q YD
Sbjct: 131 NRIVQKGTQYSLCIFRTSNGRGWGVKTLVKIKRMSFVMEYVGEVITSEEAERRGQFYD-- 188
Query: 250 ASSPRNSSALLVIREHLPSGKACLRMNIDATRIGNIARFINHSCDGG-NLSTTLVRSSGS 308
N + S + +DA R GN++ F+NHSCD + + + +
Sbjct: 189 -----NKGITYLFDLDYESDE----FTVDAARYGNVSHFVNHSCDPNLQVFNVFIDNLDT 239
Query: 309 ILPRLCFFASKDIKEGEELAFSY-----GEI----------RARPRGLPCYCGSTSCFGI 353
LPR+ F+++ I GEEL F Y G+I + R R + C CG+ +C G
Sbjct: 240 RLPRIALFSTRTINAGEELTFDYQMKGSGDISSDSIDHSPAKKRVRTV-CKCGAVTCRGY 298
Query: 354 L 354
L
Sbjct: 299 L 299
>pdb|3HNA|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Mono- Methylated H3k9 Peptide
pdb|3HNA|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Mono- Methylated H3k9 Peptide
Length = 287
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 81/163 (49%), Gaps = 23/163 (14%)
Query: 195 NRLTQRGISVRLKIVRSVNKGWGLYADQFIKQGQFIC----ELLTTKEARRRQQIYDGLA 250
NR+ Q G+ RL++ R+ + GWG+ + Q I G F+C EL++ EA R++
Sbjct: 138 NRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVREE------ 191
Query: 251 SSPRNSSALLVIREHLPSGKACLRMNIDATRIGNIARFINHSCDGGNLSTTLVRSSGSI- 309
+ L ++ C IDA GN++RFINH C+ + + + +
Sbjct: 192 ------DSYLFDLDNKDGEVYC----IDARFYGNVSRFINHHCEPNLVPVRVFMAHQDLR 241
Query: 310 LPRLCFFASKDIKEGEELAFSYGEIRARPRG--LPCYCGSTSC 350
PR+ FF+++ I+ GE+L F YGE +G C CGS C
Sbjct: 242 FPRIAFFSTRLIEAGEQLGFDYGERFWDIKGKLFSCRCGSPKC 284
>pdb|2IGQ|A Chain A, Human Euchromatic Histone Methyltransferase 1
pdb|2IGQ|B Chain B, Human Euchromatic Histone Methyltransferase 1
pdb|2RFI|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Dimethylated H3k9 Peptide
pdb|2RFI|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Dimethylated H3k9 Peptide
pdb|3MO0|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E11
pdb|3MO0|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E11
pdb|3MO2|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO5|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3SWC|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SWC|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SW9|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
pdb|3SW9|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
Length = 285
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 81/163 (49%), Gaps = 23/163 (14%)
Query: 195 NRLTQRGISVRLKIVRSVNKGWGLYADQFIKQGQFIC----ELLTTKEARRRQQIYDGLA 250
NR+ Q G+ RL++ R+ + GWG+ + Q I G F+C EL++ EA R++
Sbjct: 136 NRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVREE------ 189
Query: 251 SSPRNSSALLVIREHLPSGKACLRMNIDATRIGNIARFINHSCDGGNLSTTLVRSSGSI- 309
+ L ++ C IDA GN++RFINH C+ + + + +
Sbjct: 190 ------DSYLFDLDNKDGEVYC----IDARFYGNVSRFINHHCEPNLVPVRVFMAHQDLR 239
Query: 310 LPRLCFFASKDIKEGEELAFSYGEIRARPRG--LPCYCGSTSC 350
PR+ FF+++ I+ GE+L F YGE +G C CGS C
Sbjct: 240 FPRIAFFSTRLIEAGEQLGFDYGERFWDIKGKLFSCRCGSPKC 282
>pdb|3FPD|A Chain A, G9a-Like Protein Lysine Methyltransferase Inhibition By
Bix- 01294
pdb|3FPD|B Chain B, G9a-Like Protein Lysine Methyltransferase Inhibition By
Bix- 01294
Length = 261
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 79/163 (48%), Gaps = 23/163 (14%)
Query: 195 NRLTQRGISVRLKIVRSVNKGWGLYADQFIKQGQFIC----ELLTTKEARRRQQIYDGLA 250
NR+ Q G+ RL++ R+ + GWG+ + Q I G F+C EL++ EA R++ D
Sbjct: 112 NRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVREE--DSYL 169
Query: 251 SSPRNSSALLVIREHLPSGKACLRMNIDATRIGNIARFINHSCDGGNLSTTLVRSSGSI- 309
N + IDA GN++RFINH C+ + + + +
Sbjct: 170 FDLDNKDGEVYC--------------IDARFYGNVSRFINHHCEPNLVPVRVFMAHQDLR 215
Query: 310 LPRLCFFASKDIKEGEELAFSYGEIRARPRG--LPCYCGSTSC 350
PR+ FF+++ I+ GE+L F YGE +G C CGS C
Sbjct: 216 FPRIAFFSTRLIEAGEQLGFDYGERFWDIKGKLFSCRCGSPKC 258
>pdb|4I51|A Chain A, Methyltransferase Domain Of Human Euchromatic Histone
Methyltransferase 1, Mutant Y1211a
pdb|4I51|B Chain B, Methyltransferase Domain Of Human Euchromatic Histone
Methyltransferase 1, Mutant Y1211a
Length = 286
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 80/163 (49%), Gaps = 23/163 (14%)
Query: 195 NRLTQRGISVRLKIVRSVNKGWGLYADQFIKQGQFIC----ELLTTKEARRRQQIYDGLA 250
NR+ Q G+ RL++ R+ + GWG+ + Q I G F+C EL++ EA R++
Sbjct: 137 NRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVREE------ 190
Query: 251 SSPRNSSALLVIREHLPSGKACLRMNIDATRIGNIARFINHSCDGGNLSTTLVRSSGSI- 309
+ L ++ C IDA GN++RFINH C+ + + + +
Sbjct: 191 ------DSYLFDLDNKDGEVYC----IDARFYGNVSRFINHHCEPNLVPVRVFMAHQDLR 240
Query: 310 LPRLCFFASKDIKEGEELAFSYGEIRARPRG--LPCYCGSTSC 350
PR+ FF+++ I+ GE+L F GE +G C CGS C
Sbjct: 241 FPRIAFFSTRLIEAGEQLGFDAGERFWDIKGKLFSCRCGSPKC 283
>pdb|1MVH|A Chain A, Structure Of The Set Domain Histone Lysine
Methyltransferase Clr4
pdb|1MVX|A Chain A, Structure Of The Set Domain Histone Lysine
Methyltransferase Clr4
Length = 299
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 81/179 (45%), Gaps = 28/179 (15%)
Query: 195 NRLTQRGISVRLKIVRSVNKGWGLYADQFIKQGQFIC----ELLTTKEARRRQQIYDGLA 250
NR+ QRG ++ L+I ++ KGWG+ + +F G FI E++T+ EA +R + YD
Sbjct: 128 NRVVQRGRTLPLEIFKTKEKGWGVRSLRFAPAGTFITCYLGEVITSAEAAKRDKNYDD-- 185
Query: 251 SSPRNSSALLVIREHLPSGKACLRMNIDATRIGNIARFINHSCDGGNLSTTLVRSSG-SI 309
+ L + +DA G+++RF NHSC + VR+ G
Sbjct: 186 ----DGITYLFDLDMFDDAS---EYTVDAQNYGDVSRFFNHSCSPNIAIYSAVRNHGFRT 238
Query: 310 LPRLCFFASKDIKEGEELAFSYG--------------EIRARPRGLPCYCGSTSCFGIL 354
+ L FFA KDI+ EEL F Y + R C CGS +C G L
Sbjct: 239 IYDLAFFAIKDIQPLEELTFDYAGAKDFSPVQSQKSQQNRISKLRRQCKCGSANCRGWL 297
>pdb|4FMU|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Set
Domain- Containing Protein 2 Compound: Pr-Snf
pdb|4H12|A Chain A, The Crystal Structure Of Methyltransferase Domain Of Human
Set Domain- Containing Protein 2 In Complex With
S-Adenosyl-L-Homocysteine
Length = 278
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 78/168 (46%), Gaps = 19/168 (11%)
Query: 195 NRLTQRGISVRLKIVRSVNKGWGLYADQFIKQGQFICE----LLTTKEARRRQQIYDGLA 250
NR QR ++++ + KGWGL A + + F+ E +L KE + R + Y A
Sbjct: 108 NRRFQRKQHADVEVILTEKKGWGLRAAKDLPSNTFVLEYCGEVLDHKEFKARVKEY---A 164
Query: 251 SSPRNSSALLVIREHLPSGKACLRMNIDATRIGNIARFINHSCDGGNLSTTLVRSSGSIL 310
+ + ++ IDAT+ GN +RF+NHSC+ N T +G +
Sbjct: 165 RNKNIHYYFMALKNDEI---------IDATQKGNCSRFMNHSCEP-NCETQKWTVNGQL- 213
Query: 311 PRLCFFASKDIKEGEELAFSYGEIRARPRGLPCYCGSTSCFGILPSEN 358
R+ FF +K + G EL F Y R C+CGS +C G L EN
Sbjct: 214 -RVGFFTTKLVPSGSELTFDYQFQRYGKEAQKCFCGSANCRGYLGGEN 260
>pdb|3OPE|A Chain A, Structural Basis Of Auto-Inhibitory Mechanism Of Histone
Methyltransferase
pdb|3OPE|B Chain B, Structural Basis Of Auto-Inhibitory Mechanism Of Histone
Methyltransferase
Length = 222
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 80/163 (49%), Gaps = 16/163 (9%)
Query: 195 NRLTQRGISVR-LKIVRSVNKGWGLYADQFIKQGQFICELLTTKEARRRQQIYDGLASSP 253
N+ QR V+ L+ R+ KGWG+ + +K GQFI E L E Q+ + +
Sbjct: 64 NQRIQRHEWVQCLERFRAEEKGWGIRTKEPLKAGQFIIEYLG--EVVSEQEFRNRMIEQY 121
Query: 254 RNSSALLVIREHLPSGKACLRMNIDATRIGNIARFINHSCDGGNLSTTLVRSSGSILPRL 313
N S + +L SG M ID+ R+GN ARFINHSCD + + + S + + R+
Sbjct: 122 HNHSDHYCL--NLDSG-----MVIDSYRMGNEARFINHSCD---PNCEMQKWSVNGVYRI 171
Query: 314 CFFASKDIKEGEELAFSYG--EIRARPRGLPCYCGSTSCFGIL 354
+A KD+ G EL + Y + L C CG C GI+
Sbjct: 172 GLYALKDMPAGTELTYDYNFHSFNVEKQQL-CKCGFEKCRGII 213
>pdb|1ML9|A Chain A, Structure Of The Neurospora Set Domain Protein Dim-5, A
Histone Lysine Methyltransferase
pdb|1PEG|A Chain A, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
pdb|1PEG|B Chain B, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
Length = 302
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 79/182 (43%), Gaps = 26/182 (14%)
Query: 195 NRLTQRGISVRLKIVRSVNKGWGLYADQFIKQGQFI----CELLTTKEARRRQQIYDGLA 250
NR+ +RG +V L+I R+ ++GWG+ IK+GQF+ E++T++EA RR+ +
Sbjct: 124 NRVVERGRTVPLQIFRTKDRGWGVKCPVNIKRGQFVDRYLGEIITSEEADRRR----AES 179
Query: 251 SSPRNSSALLVIREHLPSGK------ACLRMNIDATRIGNIARFINHSCDGG-NLSTTLV 303
+ R L + A + +D + RFINHSCD + +
Sbjct: 180 TIARRKDVYLFALDKFSDPDSLDPLLAGQPLEVDGEYMSGPTRFINHSCDPNMAIFARVG 239
Query: 304 RSSGSILPRLCFFASKDIKEGEELAFSY-----------GEIRARPRGLPCYCGSTSCFG 352
+ + L FA KDI +G EL F Y + C CG+ C G
Sbjct: 240 DHADKHIHDLALFAIKDIPKGTELTFDYVNGLTGLESDAHDPSKISEMTKCLCGTAKCRG 299
Query: 353 IL 354
L
Sbjct: 300 YL 301
>pdb|3OOI|A Chain A, Crystal Structure Of Human Histone-Lysine
N-Methyltransferase Nsd1 Set Domain In Complex With
S-Adenosyl-L-Methionine
Length = 232
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 72/154 (46%), Gaps = 21/154 (13%)
Query: 206 LKIVRSVNKGWGLYADQFIKQGQF----ICELLTTKEARRRQQIYDGLASSPRNSSALLV 261
++I R++ +GWGL IK+G+F + EL+ +E R R I N L +
Sbjct: 94 VEIFRTLQRGWGLRTKTDIKKGEFVNEYVGELIDEEECRAR--IRYAQEHDITNFYMLTL 151
Query: 262 IREHLPSGKACLRMNIDATRIGNIARFINHSCDGGNLSTTLVRSSGSILPRLCFFASKDI 321
++ + IDA GN ARF+NH C N T +G R+ FA DI
Sbjct: 152 DKDRI----------IDAGPKGNYARFMNHCCQ-PNCETQKWSVNGDT--RVGLFALSDI 198
Query: 322 KEGEELAFSYG-EIRARPRGLPCYCGSTSCFGIL 354
K G EL F+Y E + + C CG+ +C G L
Sbjct: 199 KAGTELTFNYNLECLGNGKTV-CKCGAPNCSGFL 231
>pdb|2W5Y|A Chain A, Binary Complex Of The Mixed Lineage Leukaemia (Mll1) Set
Domain With The Cofactor Product S-Adenosylhomocysteine.
pdb|2W5Z|A Chain A, Ternary Complex Of The Mixed Lineage Leukaemia (Mll1) Set
Domain With The Cofactor Product S-Adenosylhomocysteine
And Histone Peptide
Length = 192
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 65/158 (41%), Gaps = 33/158 (20%)
Query: 208 IVRSVNKGWGLYADQFIKQGQFICE----LLTTKEARRRQQIYDGLASSPRNSSALLVIR 263
+ RS G GL+ + I G+ + E ++ + + +R++ YD
Sbjct: 56 VYRSPIHGRGLFCKRNIDAGEMVIEYAGNVIRSIQTDKREKYYDS--------------- 100
Query: 264 EHLPSGKACLRMNID------ATRIGNIARFINHSCDGGNLSTTLVRSSGSILPRLCFFA 317
G C ID AT GN ARFINHSC+ N + ++ G + FA
Sbjct: 101 ----KGIGCYMFRIDDSEVVDATMHGNAARFINHSCE-PNCYSRVINIDGQ--KHIVIFA 153
Query: 318 SKDIKEGEELAFSYG-EIRARPRGLPCYCGSTSCFGIL 354
+ I GEEL + Y I LPC CG+ C L
Sbjct: 154 MRKIYRGEELTYDYKFPIEDASNKLPCNCGAKKCRKFL 191
>pdb|3F9W|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9X|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9Y|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-y334f / H4-lys20me1
/ Adohcy
pdb|3F9Y|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-y334f / H4-lys20me1
/ Adohcy
Length = 166
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 72/155 (46%), Gaps = 24/155 (15%)
Query: 195 NRLTQRGISVRLKIVRSVNKGWGLYADQFIKQGQFICE----LLTTKEARRRQQIYDGLA 250
+ L + G +KI KG G+ A + +G F+ E L+ +A++R+ +Y A
Sbjct: 21 DELIESGKEEGMKIDLIDGKGRGVIATKQFSRGDFVVEYHGDLIEITDAKKREALY---A 77
Query: 251 SSPRNSSALLVIREHLPSGKACLRMNIDATRIGN-IARFINHS-CDGGNLSTTLVRSSGS 308
P S+ + S C +DATR N + R INHS C GN T L G
Sbjct: 78 QDP--STGCYMYYFQYLSKTYC----VDATRETNRLGRLINHSKC--GNCQTKLHDIDG- 128
Query: 309 ILPRLCFFASKDIKEGEELAFSYGE-----IRARP 338
+P L AS+DI GEEL F YG+ I A P
Sbjct: 129 -VPHLILIASRDIAAGEELLFDYGDRSKASIEAHP 162
>pdb|4IJ8|A Chain A, Crystal Structure Of The Complex Of Setd8 With Sam
pdb|4IJ8|B Chain B, Crystal Structure Of The Complex Of Setd8 With Sam
Length = 165
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 70/154 (45%), Gaps = 22/154 (14%)
Query: 195 NRLTQRGISVRLKIVRSVNKGWGLYADQFIKQGQFICE----LLTTKEARRRQQIYDGLA 250
+ L + G +KI KG G+ A + +G F+ E L+ +A++R+ +Y A
Sbjct: 20 DELIESGKEEGMKIDLIDGKGRGVIATKQFSRGDFVVEYHGDLIEITDAKKREALY---A 76
Query: 251 SSPRNSSALLVIREHLPSGKACLRMNIDATRIGN-IARFINHSCDGGNLSTTLVRSSGSI 309
P + + S C +DATR N + R INHS GN T L G
Sbjct: 77 QDPSTGCYMYYFQ--YLSKTYC----VDATRETNRLGRLINHS-KSGNCQTKLHDIDG-- 127
Query: 310 LPRLCFFASKDIKEGEELAFSYGE-----IRARP 338
+P L AS+DI GEEL + YG+ I A P
Sbjct: 128 VPHLILIASRDIAAGEELLYDYGDRSKASIEAHP 161
>pdb|3F9Z|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
Length = 166
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 72/155 (46%), Gaps = 24/155 (15%)
Query: 195 NRLTQRGISVRLKIVRSVNKGWGLYADQFIKQGQFICE----LLTTKEARRRQQIYDGLA 250
+ L + G +KI KG G+ A + +G F+ E L+ +A++R+ +Y A
Sbjct: 21 DELIESGKEEGMKIDLIDGKGRGVIATKQFSRGDFVVEFHGDLIEITDAKKREALY---A 77
Query: 251 SSPRNSSALLVIREHLPSGKACLRMNIDATRIGN-IARFINHS-CDGGNLSTTLVRSSGS 308
P S+ + S C +DATR N + R INHS C GN T L G
Sbjct: 78 QDP--STGCYMYYFQYLSKTYC----VDATRETNRLGRLINHSKC--GNCQTKLHDIDG- 128
Query: 309 ILPRLCFFASKDIKEGEELAFSYGE-----IRARP 338
+P L AS+DI GEEL + YG+ I A P
Sbjct: 129 -VPHLILIASRDIAAGEELLYDYGDRSKASIEAHP 162
>pdb|2BQZ|A Chain A, Crystal Structure Of A Ternary Complex Of The Human
Histone Methyltransferase Pr-Set7 (Also Known As Set8)
pdb|2BQZ|E Chain E, Crystal Structure Of A Ternary Complex Of The Human
Histone Methyltransferase Pr-Set7 (Also Known As Set8)
Length = 161
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 72/155 (46%), Gaps = 24/155 (15%)
Query: 195 NRLTQRGISVRLKIVRSVNKGWGLYADQFIKQGQFICE----LLTTKEARRRQQIYDGLA 250
+ L + G +KI KG G+ A + +G F+ E L+ +A++R+ +Y A
Sbjct: 16 DELIESGKEEGMKIDLIDGKGRGVIATKQFSRGDFVVEYHGDLIEITDAKKREALY---A 72
Query: 251 SSPRNSSALLVIREHLPSGKACLRMNIDATRIGN-IARFINHS-CDGGNLSTTLVRSSGS 308
P S+ + S C +DATR N + R INHS C GN T L G
Sbjct: 73 QDP--STGCYMYYFQYLSKTYC----VDATRETNRLGRLINHSKC--GNCQTKLHDIDG- 123
Query: 309 ILPRLCFFASKDIKEGEELAFSYGE-----IRARP 338
+P L AS+DI GEEL + YG+ I A P
Sbjct: 124 -VPHLILIASRDIAAGEELLYDYGDRSKASIEAHP 157
>pdb|1ZKK|A Chain A, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|B Chain B, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|C Chain C, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|D Chain D, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
Length = 167
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 72/155 (46%), Gaps = 24/155 (15%)
Query: 195 NRLTQRGISVRLKIVRSVNKGWGLYADQFIKQGQFICE----LLTTKEARRRQQIYDGLA 250
+ L + G +KI KG G+ A + +G F+ E L+ +A++R+ +Y A
Sbjct: 22 DELIESGKEEGMKIDLIDGKGRGVIATKQFSRGDFVVEYHGDLIEITDAKKREALY---A 78
Query: 251 SSPRNSSALLVIREHLPSGKACLRMNIDATRIGN-IARFINHS-CDGGNLSTTLVRSSGS 308
P S+ + S C +DATR N + R INHS C GN T L G
Sbjct: 79 QDP--STGCYMYYFQYLSKTYC----VDATRETNRLGRLINHSKC--GNCQTKLHDIDG- 129
Query: 309 ILPRLCFFASKDIKEGEELAFSYGE-----IRARP 338
+P L AS+DI GEEL + YG+ I A P
Sbjct: 130 -VPHLILIASRDIAAGEELLYDYGDRSKASIEAHP 163
>pdb|3UBM|A Chain A, Formyl-Coa:oxalate Coa-Transferase From Acetobacter Aceti
pdb|3UBM|B Chain B, Formyl-Coa:oxalate Coa-Transferase From Acetobacter Aceti
pdb|3UBM|C Chain C, Formyl-Coa:oxalate Coa-Transferase From Acetobacter Aceti
pdb|3UBM|D Chain D, Formyl-Coa:oxalate Coa-Transferase From Acetobacter Aceti
Length = 456
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 10 LINCHKRTIEVDEEQKQNQF-----LQWARLILPWLTPGELANVSLTCRTLSQIS 59
++NC+KR++E++ + + + ++WA ++L PG + + T L Q++
Sbjct: 88 MLNCNKRSVELNTKTPEGKAVFEKCIKWADILLENFRPGAMERMGFTWEYLQQLN 142
>pdb|3VGK|A Chain A, Crystal Structure Of A Rok Family Glucokinase From
Streptomyces Griseus
pdb|3VGK|B Chain B, Crystal Structure Of A Rok Family Glucokinase From
Streptomyces Griseus
pdb|3VGK|C Chain C, Crystal Structure Of A Rok Family Glucokinase From
Streptomyces Griseus
pdb|3VGK|D Chain D, Crystal Structure Of A Rok Family Glucokinase From
Streptomyces Griseus
pdb|3VGK|E Chain E, Crystal Structure Of A Rok Family Glucokinase From
Streptomyces Griseus
pdb|3VGK|F Chain F, Crystal Structure Of A Rok Family Glucokinase From
Streptomyces Griseus
pdb|3VGK|G Chain G, Crystal Structure Of A Rok Family Glucokinase From
Streptomyces Griseus
pdb|3VGK|H Chain H, Crystal Structure Of A Rok Family Glucokinase From
Streptomyces Griseus
pdb|3VGL|A Chain A, Crystal Structure Of A Rok Family Glucokinase From
Streptomyces Griseus In Complex With Glucose And Amppnp
pdb|3VGM|A Chain A, Crystal Structure Of A Rok Family Glucokinase From
Streptomyces Griseus In Complex With Glucose
Length = 321
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 327 LAFSYGEIRARPRGLPCYCGSTSCF 351
+A +G IR P GL C CGS C+
Sbjct: 151 VAAEFGHIRVVPDGLLCGCGSQGCW 175
>pdb|1K4R|A Chain A, Structure Of Dengue Virus
pdb|1K4R|B Chain B, Structure Of Dengue Virus
pdb|1K4R|C Chain C, Structure Of Dengue Virus
pdb|1N6G|A Chain A, The Structure Of Immature Dengue-2 Prm Particles
pdb|1N6G|B Chain B, The Structure Of Immature Dengue-2 Prm Particles
pdb|1N6G|C Chain C, The Structure Of Immature Dengue-2 Prm Particles
pdb|1NA4|A Chain A, The Structure Of Immature Yellow Fever Virus Particle
pdb|1NA4|B Chain B, The Structure Of Immature Yellow Fever Virus Particle
pdb|1NA4|C Chain C, The Structure Of Immature Yellow Fever Virus Particle
pdb|1SVB|A Chain A, Envelope Glycoprotein From Tick-Borne Encephalitis Virus
Length = 395
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 40 LTPGELANVSLTCRTLSQISKSITLSRSLDASRSVENFPIPF 81
LT GE +VSL CR S + + T+ LD ++VE+ P +
Sbjct: 174 LTMGEYGDVSLLCRVASGVDLAQTVILELD--KTVEHLPTAW 213
>pdb|1URZ|A Chain A, Low Ph Induced, Membrane Fusion Conformation Of The
Envelope Protein Of Tick-Borne Encephalitis Virus
pdb|1URZ|B Chain B, Low Ph Induced, Membrane Fusion Conformation Of The
Envelope Protein Of Tick-Borne Encephalitis Virus
pdb|1URZ|C Chain C, Low Ph Induced, Membrane Fusion Conformation Of The
Envelope Protein Of Tick-Borne Encephalitis Virus
pdb|1URZ|D Chain D, Low Ph Induced, Membrane Fusion Conformation Of The
Envelope Protein Of Tick-Borne Encephalitis Virus
pdb|1URZ|E Chain E, Low Ph Induced, Membrane Fusion Conformation Of The
Envelope Protein Of Tick-Borne Encephalitis Virus
pdb|1URZ|F Chain F, Low Ph Induced, Membrane Fusion Conformation Of The
Envelope Protein Of Tick-Borne Encephalitis Virus
Length = 401
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 40 LTPGELANVSLTCRTLSQISKSITLSRSLDASRSVENFPIPF 81
LT GE +VSL CR S + + T+ LD ++VE+ P +
Sbjct: 174 LTMGEYGDVSLLCRVASGVDLAQTVILELD--KTVEHLPTAW 213
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,509,890
Number of Sequences: 62578
Number of extensions: 284086
Number of successful extensions: 505
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 458
Number of HSP's gapped (non-prelim): 24
length of query: 359
length of database: 14,973,337
effective HSP length: 100
effective length of query: 259
effective length of database: 8,715,537
effective search space: 2257324083
effective search space used: 2257324083
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)