Query 018216
Match_columns 359
No_of_seqs 348 out of 1543
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 07:07:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018216.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018216hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1141 Predicted histone meth 100.0 8.5E-49 1.8E-53 397.1 6.4 179 14-231 615-826 (1262)
2 KOG1082 Histone H3 (Lys9) meth 100.0 1.1E-44 2.4E-49 357.1 16.4 274 55-359 50-358 (364)
3 KOG4442 Clathrin coat binding 100.0 2.6E-43 5.6E-48 355.6 13.4 165 178-357 92-262 (729)
4 KOG1080 Histone H3 (Lys4) meth 100.0 3.1E-29 6.8E-34 267.9 10.3 136 204-355 866-1005(1005)
5 KOG1079 Transcriptional repres 100.0 3.5E-29 7.5E-34 252.1 8.7 174 132-334 521-711 (739)
6 smart00317 SET SET (Su(var)3-9 99.9 1.6E-21 3.5E-26 159.5 11.9 112 205-331 1-116 (116)
7 KOG1083 Putative transcription 99.8 2.8E-20 6E-25 194.7 3.9 128 193-334 1166-1296(1306)
8 KOG1085 Predicted methyltransf 99.8 1.1E-18 2.5E-23 161.2 8.4 124 199-334 251-379 (392)
9 PF05033 Pre-SET: Pre-SET moti 99.7 1.2E-17 2.7E-22 136.0 5.0 100 69-196 1-103 (103)
10 smart00468 PreSET N-terminal t 99.6 4.2E-16 9.1E-21 126.0 6.8 39 67-105 1-40 (98)
11 COG2940 Proteins containing SE 99.6 2.3E-16 5.1E-21 161.3 3.1 157 184-355 312-480 (480)
12 PF00856 SET: SET domain; Int 99.4 5.2E-13 1.1E-17 113.9 7.4 54 276-332 109-162 (162)
13 KOG1081 Transcription factor N 99.0 9.8E-11 2.1E-15 118.8 2.5 150 179-356 288-438 (463)
14 KOG1141 Predicted histone meth 98.9 2.7E-09 5.8E-14 110.8 7.4 298 19-354 823-1261(1262)
15 KOG2589 Histone tail methylase 98.6 6.3E-08 1.4E-12 93.2 5.2 59 283-347 194-252 (453)
16 cd01395 HMT_MBD Methyl-CpG bin 98.0 1.2E-06 2.6E-11 64.0 0.4 30 14-43 20-49 (60)
17 KOG2461 Transcription factor B 97.9 8.9E-06 1.9E-10 81.2 3.6 116 202-334 26-145 (396)
18 smart00570 AWS associated with 97.1 0.00029 6.3E-09 49.8 1.7 31 168-202 20-50 (51)
19 smart00508 PostSET Cysteine-ri 97.0 0.00043 9.3E-09 41.9 1.5 17 340-356 2-18 (26)
20 smart00391 MBD Methyl-CpG bind 96.1 0.0017 3.7E-08 50.1 0.4 31 14-44 24-54 (77)
21 cd00122 MBD MeCP2, MBD1, MBD2, 95.7 0.0035 7.7E-08 46.2 0.6 29 15-43 22-50 (62)
22 cd01397 HAT_MBD Methyl-CpG bin 94.9 0.011 2.3E-07 45.1 1.0 29 14-42 21-49 (73)
23 PF01429 MBD: Methyl-CpG bindi 94.7 0.011 2.3E-07 45.6 0.5 31 15-45 28-58 (77)
24 KOG2084 Predicted histone tail 91.3 0.36 7.9E-06 48.7 5.7 40 288-334 208-248 (482)
25 cd01396 MeCP2_MBD MeCP2, MBD1, 90.1 0.11 2.5E-06 40.0 0.6 29 15-43 23-51 (77)
26 KOG1337 N-methyltransferase [G 82.1 1.1 2.3E-05 46.2 2.9 41 288-334 239-279 (472)
27 PF03638 TCR: Tesmin/TSO1-like 79.0 0.96 2.1E-05 30.7 0.9 37 149-197 4-40 (42)
28 PF12937 F-box-like: F-box-lik 61.4 5.4 0.00012 27.0 1.5 31 31-61 7-37 (47)
29 PF08666 SAF: SAF domain; Int 57.5 6.4 0.00014 28.1 1.5 15 314-328 3-17 (63)
30 PF00646 F-box: F-box domain; 49.5 9.1 0.0002 25.7 1.1 33 30-62 8-40 (48)
31 PF11403 Yeast_MT: Yeast metal 45.0 22 0.00048 22.8 2.2 18 149-171 22-39 (40)
32 smart00256 FBOX A Receptor for 42.8 18 0.0004 22.9 1.8 31 31-61 4-34 (41)
33 KOG2155 Tubulin-tyrosine ligas 39.9 17 0.00036 37.1 1.7 49 285-334 204-252 (631)
34 smart00858 SAF This domain fam 30.5 34 0.00073 24.2 1.6 16 314-329 3-18 (64)
35 PF01847 VHL: von Hippel-Linda 24.4 84 0.0018 27.6 3.2 38 285-330 16-53 (156)
36 smart00317 SET SET (Su(var)3-9 24.0 86 0.0019 24.3 3.1 16 216-231 98-113 (116)
37 cd05468 pVHL von Hippel-Landau 23.2 1.1E+02 0.0024 26.2 3.7 37 286-330 11-47 (141)
38 KOG1081 Transcription factor N 22.4 26 0.00056 36.1 -0.3 138 211-358 120-267 (463)
39 KOG4289 Cadherin EGF LAG seven 21.8 1.5E+02 0.0032 35.1 5.2 78 148-230 1789-1887(2531)
40 TIGR03569 NeuB_NnaB N-acetylne 20.3 55 0.0012 32.2 1.5 20 312-331 277-296 (329)
No 1
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=100.00 E-value=8.5e-49 Score=397.07 Aligned_cols=179 Identities=21% Similarity=0.306 Sum_probs=148.1
Q ss_pred cccceeeeeeCCchhhhhhHHHHhccCCcchhhhHhhh-------hhhhhhhcccccccccccccCCcCCCCeeeEeCCC
Q 018216 14 HKRTIEVDEEQKQNQFLQWARLILPWLTPGELANVSLT-------CRTLSQISKSITLSRSLDASRSVENFPIPFHNAAD 86 (359)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~DiS~G~E~~pI~~vN~vD 86 (359)
+++.+||.|++|||+.||.+++|.+||.++.+.++... ....+...+.....++.||+.|+|.+||+++|++|
T Consensus 615 ~~~~fhv~yktpcg~~lr~~~el~ryL~et~c~flf~~~f~~~~yV~~~r~~~p~kp~~~~~Di~~g~e~vpis~~neid 694 (1262)
T KOG1141|consen 615 YIRDFHVEYKTPCGMPLRMRIELYRYLVETRCKFLFVIGFDRAFYVVRHRAPNPLKPGNRCTDIPCGREHVPISEKNEID 694 (1262)
T ss_pred hhhcceeeccCCCccchHHHHHHHHHHHHhcCcEEEEeecccchheeecccCCCcCCcceeccccCCccccccceeeccc
Confidence 78899999999999999999999999999988776654 22334455556678899999999999999999999
Q ss_pred CCCCCCeEEcccccCCCCCCCCCCCCCccccccccccccccccccccCcccccccccCCCCCCCCCcCCCccCCCCCCCc
Q 018216 87 KTPYAYFIYTPSQIIPPPCPAQFPPRQFWASTNAAADAESNSSLSRLGFDSVSLVCESDESESGCDCEECFEVGLGDGVF 166 (359)
Q Consensus 87 ~~~~~~f~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~C~~~~~~~gC~C~~~~~~~~~~~~~ 166 (359)
+.++|.|.|....|.... ...+ +++++ ..+|+|..+|.+. .
T Consensus 695 s~~lpq~ay~K~~ip~~~------------nl~n--~~~~f--------------------l~scdc~~gcid~-----~ 735 (1262)
T KOG1141|consen 695 SHRLPQAAYKKHMIPTNN------------NLSN--RRKDF--------------------LQSCDCPTGCIDS-----M 735 (1262)
T ss_pred CcCCccchhheeeccCCC------------cccc--cChhh--------------------hhcCCCCcchhhh-----h
Confidence 999999999997652111 1111 12222 2789999999877 8
Q ss_pred CCCCCCC-------------------------cccccceeecCCCCCCCC-CCCCccccCCCcccEEEEEeCCCCcccee
Q 018216 167 GCPCFSG-------------------------LEDVGIVSECGPSCGCGS-ECGNRLTQRGISVRLKIVRSVNKGWGLYA 220 (359)
Q Consensus 167 ~c~C~~~-------------------------~~~~~~i~EC~~~C~C~~-~C~Nrv~Q~g~~~~leV~~t~~kGwGlrA 220 (359)
+|+|.++ ...+..+|||+..|+|.+ .|.||++|+|++++|++|++..||||+|+
T Consensus 736 kcachQltvk~~~t~p~~~v~~t~gykyKRl~e~~ptg~yEc~k~ckc~~~~C~nrmvqhg~qvRlq~fkt~~kGWg~rc 815 (1262)
T KOG1141|consen 736 KCACHQLTVKKKTTGPNQNVASTNGYKYKRLIEIRPTGPYECLKACKCCGPDCLNRMVQHGYQVRLQRFKTIHKGWGRRC 815 (1262)
T ss_pred hhhHHHHHHHhhccCCCcccccCcchhhHHHHHhcCCCHHHHHHhhccCcHHHHHHHhhcCceeEeeeccccccccceEe
Confidence 8999864 012466899999999876 79999999999999999999999999999
Q ss_pred ccccCCCcEEE
Q 018216 221 DQFIKQGQFIC 231 (359)
Q Consensus 221 ~~~I~~G~fI~ 231 (359)
+++|.+|.|||
T Consensus 816 lddi~~g~fVc 826 (1262)
T KOG1141|consen 816 LDDITGGNFVC 826 (1262)
T ss_pred eeecCCceEEE
Confidence 99999999999
No 2
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.1e-44 Score=357.07 Aligned_cols=274 Identities=32% Similarity=0.498 Sum_probs=190.6
Q ss_pred hhhhcccccccccccccCCcCCCCeeeEeCCCCCCCCCeEEcccccCCCCCCCCCCCCCccccccccccccccccccccC
Q 018216 55 LSQISKSITLSRSLDASRSVENFPIPFHNAADKTPYAYFIYTPSQIIPPPCPAQFPPRQFWASTNAAADAESNSSLSRLG 134 (359)
Q Consensus 55 ~~~~~~~~~~~~~~DiS~G~E~~pI~~vN~vD~~~~~~f~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (359)
.....+..+.....||+.|.|++||+++|+||...+++|.|++..+++.+... .+ .
T Consensus 50 ~~~~~~~~~~~~~~d~~~~~e~~~v~~~n~id~~~~~~f~y~~~~~~~~~~~~-----~~-----------~-------- 105 (364)
T KOG1082|consen 50 ANDKDKLEAKSELEDIALGSENLPVPLVNRIDEDAPLYFQYIATEIVDPGELS-----DC-----------E-------- 105 (364)
T ss_pred cccccccccccccccccCccccCceeeeeeccCCccccceeccccccCccccc-----cC-----------c--------
Confidence 33344444566789999999999999999999876689999999876553100 00 0
Q ss_pred cccccccccCCCCCC---CCCcCCCccCCCCCCCcCCCCC---CCcccccceeecCCCCCCCCCCCCccccCCCcccEEE
Q 018216 135 FDSVSLVCESDESES---GCDCEECFEVGLGDGVFGCPCF---SGLEDVGIVSECGPSCGCGSECGNRLTQRGISVRLKI 208 (359)
Q Consensus 135 ~~~~~c~C~~~~~~~---gC~C~~~~~~~~~~~~~~c~C~---~~~~~~~~i~EC~~~C~C~~~C~Nrv~Q~g~~~~leV 208 (359)
....|.|...+... .|.|..... ....+..+. ........+|||++.|+|++.|.||++|+|++.+|+|
T Consensus 106 -~~~~c~C~~~~~~~~~~~C~C~~~n~----~~~~~~~~~~~~~~~~~~~~i~EC~~~C~C~~~C~nRv~q~g~~~~leI 180 (364)
T KOG1082|consen 106 -NSTGCRCCSSCSSVLPLTCLCERHNG----GLVAYTCDGDCGTLGKFKEPVFECSVACGCHPDCANRVVQKGLQFHLEV 180 (364)
T ss_pred -cccCCCccCCCCCCCCccccChHhhC----CccccccCCccccccccCccccccccCCCCCCcCcchhhccccccceEE
Confidence 00113332222111 266655431 111222221 2233456899999999999999999999999999999
Q ss_pred EEeCCCCccceeccccCCCcEEE----EecCHHHHHHHHHHhhcccCCCCCCchhhhhhhcCC-------------CCCc
Q 018216 209 VRSVNKGWGLYADQFIKQGQFIC----ELLTTKEARRRQQIYDGLASSPRNSSALLVIREHLP-------------SGKA 271 (359)
Q Consensus 209 ~~t~~kGwGlrA~~~I~~G~fI~----E~i~~~e~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~ 271 (359)
|+++.+|||||+++.|++|+||+ |+++..+++.|...++....... .+.....+... ....
T Consensus 181 frt~~kGwgvRs~~~I~~G~fvcEyaGe~~t~~e~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (364)
T KOG1082|consen 181 FRTPEKGWGVRTLDPIPAGEFVCEYAGEVLTSEEAQRRTHLREYLDDDCD--AYSIADREWVDESPVGNTFVAPSLPGGP 258 (364)
T ss_pred EecCCceeeecccccccCCCeeEEEeeEecChHHhhhccccccccccccc--cchhhhccccccccccccccccccccCC
Confidence 99999999999999999999999 56677888877543332111111 00000000000 0111
Q ss_pred ceeEEEeccccCCcccccccCCCCCce-EEEEEEeCCCcccEEEEEEccCCCCCCeEEEeCCCCCC-----------CCC
Q 018216 272 CLRMNIDATRIGNIARFINHSCDGGNL-STTLVRSSGSILPRLCFFASKDIKEGEELAFSYGEIRA-----------RPR 339 (359)
Q Consensus 272 ~~~~~IDa~~~GN~aRFiNHSC~PNN~-~~v~~~~~g~~~p~i~~fA~rdI~~GEELT~dYg~~~~-----------~~~ 339 (359)
...+.|||+..||++|||||||.||+. +.++..+.+..++|++|||+++|+||||||||||.... ...
T Consensus 259 ~~~~~ida~~~GNv~RfinHSC~PN~~~~~v~~~~~~~~~~~i~ffa~~~I~p~~ELT~dYg~~~~~~~~~~~~~~~~~~ 338 (364)
T KOG1082|consen 259 GRELLIDAKPHGNVARFINHSCSPNLLYQAVFQDEFVLLYLRIGFFALRDISPGEELTLDYGKAYKLLVQDGANIYTPVM 338 (364)
T ss_pred CcceEEchhhcccccccccCCCCccceeeeeeecCCccchheeeeeeccccCCCcccchhhccccccccccccccccccc
Confidence 246899999999999999999999543 45666655678899999999999999999999996521 346
Q ss_pred CceeecCCCCCccccCCCCC
Q 018216 340 GLPCYCGSTSCFGILPSENT 359 (359)
Q Consensus 340 ~~~C~CGs~~Crg~l~~~~~ 359 (359)
...|.||+.+||+.+...++
T Consensus 339 ~~~c~c~~~~cr~~~~~~~~ 358 (364)
T KOG1082|consen 339 KKNCNCGLEKCRGLLGSAPC 358 (364)
T ss_pred chhhcCCCHHhCcccCCCcc
Confidence 78899999999999987653
No 3
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.6e-43 Score=355.63 Aligned_cols=165 Identities=35% Similarity=0.599 Sum_probs=149.9
Q ss_pred cceeecCC-CCC-CCCCCCCccccCCCcccEEEEEeCCCCccceeccccCCCcEEE----EecCHHHHHHHHHHhhcccC
Q 018216 178 GIVSECGP-SCG-CGSECGNRLTQRGISVRLKIVRSVNKGWGLYADQFIKQGQFIC----ELLTTKEARRRQQIYDGLAS 251 (359)
Q Consensus 178 ~~i~EC~~-~C~-C~~~C~Nrv~Q~g~~~~leV~~t~~kGwGlrA~~~I~~G~fI~----E~i~~~e~~~r~~~~~~~~~ 251 (359)
....||++ .|. |+..|+|+.+|+....+++||+|++|||||||.++|++|+||+ |+|..+|.++|...|+.
T Consensus 92 ~t~iECs~~~C~~cg~~C~NQRFQkkqyA~vevF~Te~KG~GLRA~~dI~~g~FI~EY~GEVI~~~Ef~kR~~~Y~~--- 168 (729)
T KOG4442|consen 92 MTSIECSDRECPRCGVYCKNQRFQKKQYAKVEVFLTEKKGCGLRAEEDIPKGQFILEYIGEVIEEKEFEKRVKRYAK--- 168 (729)
T ss_pred hhhcccCCccCCCccccccchhhhhhccCceeEEEecCcccceeeccccCCCcEEeeeccccccHHHHHHHHHHHHh---
Confidence 36789999 698 9999999999999999999999999999999999999999999 55677899999999997
Q ss_pred CCCCCchhhhhhhcCCCCCcceeEEEeccccCCcccccccCCCCCceEEEEEEeCCCcccEEEEEEccCCCCCCeEEEeC
Q 018216 252 SPRNSSALLVIREHLPSGKACLRMNIDATRIGNIARFINHSCDGGNLSTTLVRSSGSILPRLCFFASKDIKEGEELAFSY 331 (359)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~IDa~~~GN~aRFiNHSC~PNN~~~v~~~~~g~~~p~i~~fA~rdI~~GEELT~dY 331 (359)
.+..+.|++.+.. ..+|||+.+||.||||||||+| |+....|.+.|.. ||+|||.|.|++||||||||
T Consensus 169 d~~kh~Yfm~L~~---------~e~IDAT~KGnlaRFiNHSC~P-Na~~~KWtV~~~l--RvGiFakk~I~~GEEITFDY 236 (729)
T KOG4442|consen 169 DGIKHYYFMALQG---------GEYIDATKKGNLARFINHSCDP-NAEVQKWTVPDEL--RVGIFAKKVIKPGEEITFDY 236 (729)
T ss_pred cCCceEEEEEecC---------CceecccccCcHHHhhcCCCCC-CceeeeeeeCCee--EEEEeEecccCCCceeeEec
Confidence 3455666666554 4689999999999999999999 7888888888864 99999999999999999999
Q ss_pred CCCCCCCCCceeecCCCCCccccCCC
Q 018216 332 GEIRARPRGLPCYCGSTSCFGILPSE 357 (359)
Q Consensus 332 g~~~~~~~~~~C~CGs~~Crg~l~~~ 357 (359)
++.++.....+|+||+++||||||++
T Consensus 237 qf~rYGr~AQ~CyCgeanC~G~IGgk 262 (729)
T KOG4442|consen 237 QFDRYGRDAQPCYCGEANCRGWIGGK 262 (729)
T ss_pred ccccccccccccccCCcccccccCCC
Confidence 99999899999999999999999987
No 4
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=99.96 E-value=3.1e-29 Score=267.92 Aligned_cols=136 Identities=35% Similarity=0.626 Sum_probs=118.8
Q ss_pred ccEEEEEeCCCCccceeccccCCCcEEEEecCH----HHHHHHHHHhhcccCCCCCCchhhhhhhcCCCCCcceeEEEec
Q 018216 204 VRLKIVRSVNKGWGLYADQFIKQGQFICELLTT----KEARRRQQIYDGLASSPRNSSALLVIREHLPSGKACLRMNIDA 279 (359)
Q Consensus 204 ~~leV~~t~~kGwGlrA~~~I~~G~fI~E~i~~----~e~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IDa 279 (359)
..|...++..+||||||.+.|.+|++|+||+++ ..|+.|+..|.. .+...+|+|.+++ ..+|||
T Consensus 866 k~~~F~~s~iH~wglfa~~~i~~~dmViEY~Ge~vR~~iad~RE~~Y~~---~gi~~sYlfrid~---------~~ViDA 933 (1005)
T KOG1080|consen 866 KYVKFGRSGIHGWGLFAMENIAAGDMVIEYRGELVRSSIADLREARYER---MGIGDSYLFRIDD---------EVVVDA 933 (1005)
T ss_pred hhhccccccccccceeeccCccccceEEEeeceehhhhHHHHHHHHHhc---cCcccceeeeccc---------ceEEec
Confidence 347777899999999999999999999988765 467888888886 4557789988876 479999
Q ss_pred cccCCcccccccCCCCCceEEEEEEeCCCcccEEEEEEccCCCCCCeEEEeCCCCCCCCCCceeecCCCCCccccC
Q 018216 280 TRIGNIARFINHSCDGGNLSTTLVRSSGSILPRLCFFASKDIKEGEELAFSYGEIRARPRGLPCYCGSTSCFGILP 355 (359)
Q Consensus 280 ~~~GN~aRFiNHSC~PNN~~~v~~~~~g~~~p~i~~fA~rdI~~GEELT~dYg~~~~~~~~~~C~CGs~~Crg~l~ 355 (359)
++.||+||||||||+| ||....+.++|.. +|+|||.|+|.+||||||||.+.... .+.+|+|||++|||+|.
T Consensus 934 tk~gniAr~InHsC~P-NCyakvi~V~g~~--~IvIyakr~I~~~EElTYDYkF~~e~-~kipClCgap~Crg~~n 1005 (1005)
T KOG1080|consen 934 TKKGNIARFINHSCNP-NCYAKVITVEGDK--RIVIYSKRDIAAGEELTYDYKFPTED-DKIPCLCGAPNCRGFLN 1005 (1005)
T ss_pred cccCchhheeecccCC-CceeeEEEecCee--EEEEEEecccccCceeeeeccccccc-cccccccCCCccccccC
Confidence 9999999999999999 8888888888875 99999999999999999999986333 38999999999999984
No 5
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=99.95 E-value=3.5e-29 Score=252.11 Aligned_cols=174 Identities=36% Similarity=0.631 Sum_probs=146.4
Q ss_pred ccCcccccccccCCC--CCCCCCcCCCccCCCCCCCcCCCCCCCcccccceeecCCC-CC-CC---------CCCCCccc
Q 018216 132 RLGFDSVSLVCESDE--SESGCDCEECFEVGLGDGVFGCPCFSGLEDVGIVSECGPS-CG-CG---------SECGNRLT 198 (359)
Q Consensus 132 ~~~~~~~~c~C~~~~--~~~gC~C~~~~~~~~~~~~~~c~C~~~~~~~~~i~EC~~~-C~-C~---------~~C~Nrv~ 198 (359)
...++..+|.|.-+| ...||.|...|. + ..|+|.. ...||+|. |. |+ .+|.|.-+
T Consensus 521 n~~~CEk~C~C~~dC~nrF~GC~Ck~QC~-t-----kqCpC~~------A~rECdPd~Cl~cg~~~~~d~~~~~C~N~~l 588 (739)
T KOG1079|consen 521 NETFCEKFCYCSPDCRNRFPGCRCKAQCN-T-----KQCPCYL------AVRECDPDVCLMCGNVDHFDSSKISCKNTNL 588 (739)
T ss_pred cCcchhhcccCCHHHHhcCCCCCcccccc-c-----CcCchhh------hccccCchHHhccCcccccccCccccccchh
Confidence 345777888886444 348999976662 2 4699986 57899987 74 33 28999999
Q ss_pred cCCCcccEEEEEeCCCCccceeccccCCCcEEE----EecCHHHHHHHHHHhhcccCCCCCCchhhhhhhcCCCCCccee
Q 018216 199 QRGISVRLKIVRSVNKGWGLYADQFIKQGQFIC----ELLTTKEARRRQQIYDGLASSPRNSSALLVIREHLPSGKACLR 274 (359)
Q Consensus 199 Q~g~~~~leV~~t~~kGwGlrA~~~I~~G~fI~----E~i~~~e~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (359)
|+|.+.++.|..|...|||||+++.+.|++||. |+|+++||++|+.+|+. ...+|+|.+.. +
T Consensus 589 ~~~~qkr~llapSdVaGwGlFlKe~v~KnefisEY~GE~IS~dEADrRGkiYDr-----~~cSflFnln~---------d 654 (739)
T KOG1079|consen 589 QRGEQKRVLLAPSDVAGWGLFLKESVSKNEFISEYTGEIISHDEADRRGKIYDR-----YMCSFLFNLNN---------D 654 (739)
T ss_pred hhhhhcceeechhhccccceeeccccCCCceeeeecceeccchhhhhccccccc-----ccceeeeeccc---------c
Confidence 999999999999999999999999999999999 77999999999999996 33456666554 4
Q ss_pred EEEeccccCCcccccccCCCCCceEEEEEEeCCCcccEEEEEEccCCCCCCeEEEeCCCC
Q 018216 275 MNIDATRIGNIARFINHSCDGGNLSTTLVRSSGSILPRLCFFASKDIKEGEELAFSYGEI 334 (359)
Q Consensus 275 ~~IDa~~~GN~aRFiNHSC~PNN~~~v~~~~~g~~~p~i~~fA~rdI~~GEELT~dYg~~ 334 (359)
|+|||++.||.+||+|||-+| ||....+.+.|.+ ||+|||.|.|.+||||||||+|.
T Consensus 655 yviDs~rkGnk~rFANHS~nP-NCYAkvm~V~Gdh--RIGifAkRaIeagEELffDYrYs 711 (739)
T KOG1079|consen 655 YVIDSTRKGNKIRFANHSFNP-NCYAKVMMVAGDH--RIGIFAKRAIEAGEELFFDYRYS 711 (739)
T ss_pred ceEeeeeecchhhhccCCCCC-CcEEEEEEecCCc--ceeeeehhhcccCceeeeeeccC
Confidence 899999999999999999999 6766666677764 99999999999999999999987
No 6
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=99.86 E-value=1.6e-21 Score=159.54 Aligned_cols=112 Identities=45% Similarity=0.737 Sum_probs=85.0
Q ss_pred cEEEEEeCCCCccceeccccCCCcEEEEe----cCHHHHHHHHHHhhcccCCCCCCchhhhhhhcCCCCCcceeEEEecc
Q 018216 205 RLKIVRSVNKGWGLYADQFIKQGQFICEL----LTTKEARRRQQIYDGLASSPRNSSALLVIREHLPSGKACLRMNIDAT 280 (359)
Q Consensus 205 ~leV~~t~~kGwGlrA~~~I~~G~fI~E~----i~~~e~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IDa~ 280 (359)
++++++++++|+||+|+++|++|++|+++ +...+...+...+.... ....+++.... .+.||++
T Consensus 1 ~~~~~~~~~~G~gl~a~~~i~~g~~i~~~~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~---------~~~id~~ 68 (116)
T smart00317 1 KLEVFKSPGKGWGVRATEDIPKGEFIGEYVGEIITSEEAEERSKAYDTDG---ADSFYLFEIDS---------DLCIDAR 68 (116)
T ss_pred CcEEEecCCCcEEEEECCccCCCCEEEEEEeEEECHHHHHHHHHHHHhcC---CCCEEEEECCC---------CEEEeCC
Confidence 36788899999999999999999999954 44555555544344311 11223332221 3789999
Q ss_pred ccCCcccccccCCCCCceEEEEEEeCCCcccEEEEEEccCCCCCCeEEEeC
Q 018216 281 RIGNIARFINHSCDGGNLSTTLVRSSGSILPRLCFFASKDIKEGEELAFSY 331 (359)
Q Consensus 281 ~~GN~aRFiNHSC~PNN~~~v~~~~~g~~~p~i~~fA~rdI~~GEELT~dY 331 (359)
..||++|||||||.| |++...+...+. .++.|+|+|||++|||||+||
T Consensus 69 ~~~~~~~~iNHsc~p-N~~~~~~~~~~~--~~~~~~a~r~I~~GeEi~i~Y 116 (116)
T smart00317 69 RKGNIARFINHSCEP-NCELLFVEVNGD--SRIVIFALRDIKPGEELTIDY 116 (116)
T ss_pred ccCcHHHeeCCCCCC-CEEEEEEEECCC--cEEEEEECCCcCCCCEEeecC
Confidence 999999999999999 787777666554 389999999999999999999
No 7
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]
Probab=99.79 E-value=2.8e-20 Score=194.67 Aligned_cols=128 Identities=34% Similarity=0.512 Sum_probs=100.9
Q ss_pred CCCccccC-CCcccEEEEEeCCCCccceeccccCCCcEEEEecCHHHHHHHHHH--hhcccCCCCCCchhhhhhhcCCCC
Q 018216 193 CGNRLTQR-GISVRLKIVRSVNKGWGLYADQFIKQGQFICELLTTKEARRRQQI--YDGLASSPRNSSALLVIREHLPSG 269 (359)
Q Consensus 193 C~Nrv~Q~-g~~~~leV~~t~~kGwGlrA~~~I~~G~fI~E~i~~~e~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 269 (359)
|.|+.+|+ +.-..|+||+.+.+||||++.++|++|+||+||+++....++.+. ...+. ..-..|.+.+..
T Consensus 1166 c~nqrm~r~e~cp~L~v~~gp~~G~~v~tk~PikagtfI~EYvGeVit~ke~e~~mmtl~~--~d~~~~cL~I~p----- 1238 (1306)
T KOG1083|consen 1166 CSNQRMQRHEECPPLEVFRGPKKGWGVRTKEPIKAGTFIMEYVGEVITEKEFEPRMMTLYH--NDDDHYCLVIDP----- 1238 (1306)
T ss_pred hhhHHhhhhccCCCcceeccCCCCccccccccccccchHHHHHHHHHHHHhhcccccccCC--CCCcccccccCc-----
Confidence 77776665 567789999999999999999999999999988887654433221 11100 111223333332
Q ss_pred CcceeEEEeccccCCcccccccCCCCCceEEEEEEeCCCcccEEEEEEccCCCCCCeEEEeCCCC
Q 018216 270 KACLRMNIDATRIGNIARFINHSCDGGNLSTTLVRSSGSILPRLCFFASKDIKEGEELAFSYGEI 334 (359)
Q Consensus 270 ~~~~~~~IDa~~~GN~aRFiNHSC~PNN~~~v~~~~~g~~~p~i~~fA~rdI~~GEELT~dYg~~ 334 (359)
+.+||+.++||.+||+||||.| |+..+.|.++|. .||++||+|||.+||||||||++.
T Consensus 1239 ----~l~id~~R~~n~~RfinhscKP-Nc~~qkwSVNG~--~Rv~L~A~rDi~kGEELtYDYN~k 1296 (1306)
T KOG1083|consen 1239 ----GLFIDIPRMGNGARFINHSCKP-NCEMQKWSVNGE--YRVGLFALRDLPKGEELTYDYNFK 1296 (1306)
T ss_pred ----cccCChhhccccccccccccCC-CCccccccccce--eeeeeeecCCCCCCceEEEecccc
Confidence 4689999999999999999999 899999999986 599999999999999999999875
No 8
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=99.76 E-value=1.1e-18 Score=161.24 Aligned_cols=124 Identities=33% Similarity=0.444 Sum_probs=101.2
Q ss_pred cCCCcccEEEEEeCCCCccceeccccCCCcEEEEecC----HHHHHHHHHHhhcccCCCCCCchhhhhhhcCCCCCccee
Q 018216 199 QRGISVRLKIVRSVNKGWGLYADQFIKQGQFICELLT----TKEARRRQQIYDGLASSPRNSSALLVIREHLPSGKACLR 274 (359)
Q Consensus 199 Q~g~~~~leV~~t~~kGwGlrA~~~I~~G~fI~E~i~----~~e~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (359)
.+|....|.+..-.+||.||+|...+.+|+||.||.+ -.|+..|+..|......+.++.|+-... ..
T Consensus 251 l~g~~egl~~~~~dgKGRGv~a~~~F~rgdFVVEY~Gdliei~eAk~rE~~Ya~De~~GcYMYyF~h~s---------k~ 321 (392)
T KOG1085|consen 251 LKGTNEGLLEVYKDGKGRGVRAKVNFERGDFVVEYRGDLIEISEAKVREEQYANDEEIGCYMYYFEHNS---------KK 321 (392)
T ss_pred HhccccceeEEeeccccceeEeecccccCceEEEEecceeeechHHHHHHHhccCcccceEEEeeeccC---------ee
Confidence 4566677888888889999999999999999997754 4788999999987554444443332211 26
Q ss_pred EEEeccccC-CcccccccCCCCCceEEEEEEeCCCcccEEEEEEccCCCCCCeEEEeCCCC
Q 018216 275 MNIDATRIG-NIARFINHSCDGGNLSTTLVRSSGSILPRLCFFASKDIKEGEELAFSYGEI 334 (359)
Q Consensus 275 ~~IDa~~~G-N~aRFiNHSC~PNN~~~v~~~~~g~~~p~i~~fA~rdI~~GEELT~dYg~~ 334 (359)
|+|||++.- -++|.||||=.+ |+++.++.++|. ||+.+.|.|||.+||||+||||+.
T Consensus 322 yCiDAT~et~~lGRLINHS~~g-Nl~TKvv~Idg~--pHLiLvA~rdIa~GEELlYDYGDR 379 (392)
T KOG1085|consen 322 YCIDATKETPWLGRLINHSVRG-NLKTKVVEIDGS--PHLILVARRDIAQGEELLYDYGDR 379 (392)
T ss_pred eeeecccccccchhhhcccccC-cceeeEEEecCC--ceEEEEeccccccchhhhhhcccc
Confidence 899999854 579999999998 899999999885 799999999999999999999975
No 9
>PF05033 Pre-SET: Pre-SET motif; InterPro: IPR007728 This region is found in a number of histone lysine methyltransferases (HMTase), N-terminal to the SET domain; it is generally described as the pre-SET domain. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils and stabilising the SET domain. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site [] when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity []. ; GO: 0008270 zinc ion binding, 0018024 histone-lysine N-methyltransferase activity, 0034968 histone lysine methylation, 0005634 nucleus; PDB: 3K5K_A 2O8J_D 3RJW_B 1ML9_A 1PEG_B 1MVH_A 1MVX_A 3BO5_A 2RFI_B 3MO5_B ....
Probab=99.70 E-value=1.2e-17 Score=135.98 Aligned_cols=100 Identities=31% Similarity=0.498 Sum_probs=52.5
Q ss_pred cccCCcCCCCeeeEeCCCCCCC-CCeEEcccccCCCCCCCCCCCCCccccccccccccccccccccCcccccccccCCC-
Q 018216 69 DASRSVENFPIPFHNAADKTPY-AYFIYTPSQIIPPPCPAQFPPRQFWASTNAAADAESNSSLSRLGFDSVSLVCESDE- 146 (359)
Q Consensus 69 DiS~G~E~~pI~~vN~vD~~~~-~~f~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~C~~~~- 146 (359)
|||+|+|++||+++|+||++++ +.|+|++++++++++.. +++... ..|.|...|
T Consensus 1 Dis~g~e~~pI~~~N~vd~~~~p~~F~Yi~~~~~~~~~~~-~~~~~~-----------------------~~C~C~~~C~ 56 (103)
T PF05033_consen 1 DISRGKENVPIPVVNDVDDEPPPPNFEYIPENIYGEGVPD-IDPEFL-----------------------QGCDCSGDCS 56 (103)
T ss_dssp -TTCTSSSS-EEEEESSSS--SSTSSEE-SS-EESTTSS--TBGGGT-----------------------S----SSSST
T ss_pred CCCCCccCCCEEEEeCCCCCCCCCCeEEeeeEEcCCCccc-cccccC-----------------------ccCccCCCCC
Confidence 8999999999999999999876 69999999987665431 111100 123343333
Q ss_pred CCCCCCcCCCccCCCCCCCcCCCCCCC-cccccceeecCCCCCCCCCCCCc
Q 018216 147 SESGCDCEECFEVGLGDGVFGCPCFSG-LEDVGIVSECGPSCGCGSECGNR 196 (359)
Q Consensus 147 ~~~gC~C~~~~~~~~~~~~~~c~C~~~-~~~~~~i~EC~~~C~C~~~C~Nr 196 (359)
....|.|...... ...|..=..+ .....+||||++.|+|+.+|.||
T Consensus 57 ~~~~C~C~~~~~~----~~~Y~~~g~l~~~~~~~i~EC~~~C~C~~~C~NR 103 (103)
T PF05033_consen 57 NPSNCECLQRNGG----IFAYDSNGRLRIPDKPPIFECNDNCGCSPSCRNR 103 (103)
T ss_dssp CTTTSHHHCCTSS----S-SB-TTSSBSSSSTSEEE---TTSSS-TTSTT-
T ss_pred CCCCCcCccccCc----cccccCCCcCccCCCCeEEeCCCCCCCCCCCCCC
Confidence 3345555433311 1122221111 13567899999999999999998
No 10
>smart00468 PreSET N-terminal to some SET domains. A Cys-rich putative Zn2+-binding domain that occurs N-terminal to some SET domains. Function is unknown. Unpublished.
Probab=99.63 E-value=4.2e-16 Score=126.02 Aligned_cols=39 Identities=33% Similarity=0.489 Sum_probs=34.3
Q ss_pred cccccCCcCCCCeeeEeCCCCCCC-CCeEEcccccCCCCC
Q 018216 67 SLDASRSVENFPIPFHNAADKTPY-AYFIYTPSQIIPPPC 105 (359)
Q Consensus 67 ~~DiS~G~E~~pI~~vN~vD~~~~-~~f~Y~~~~~~~~~~ 105 (359)
..|||+|+|++||++||+||++++ +.|+|+++++++.+.
T Consensus 1 ~~Dis~G~E~~pI~~vN~vD~~~~p~~F~Yi~~~~~~~gv 40 (98)
T smart00468 1 CLDISNGKENVPVPLVNEVDEDPPPPDFEYISEYIYGQGV 40 (98)
T ss_pred CccccCCccCCCcceEecCCCCCCCCCcEECcceEcCCCc
Confidence 379999999999999999999766 689999999876654
No 11
>COG2940 Proteins containing SET domain [General function prediction only]
Probab=99.60 E-value=2.3e-16 Score=161.26 Aligned_cols=157 Identities=31% Similarity=0.497 Sum_probs=115.0
Q ss_pred CCCCCCCCCCCCccccCCCcccEEEEEeCCCCccceeccccCCCcEEEEec----CHHHHHHHHHHhhcccCCCCCCchh
Q 018216 184 GPSCGCGSECGNRLTQRGISVRLKIVRSVNKGWGLYADQFIKQGQFICELL----TTKEARRRQQIYDGLASSPRNSSAL 259 (359)
Q Consensus 184 ~~~C~C~~~C~Nrv~Q~g~~~~leV~~t~~kGwGlrA~~~I~~G~fI~E~i----~~~e~~~r~~~~~~~~~~~~~~~~~ 259 (359)
.........+.|...+........+..+..+||||||++.|++|++|.++. ...++..+...++.+. ....+
T Consensus 312 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~fa~~~i~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 387 (480)
T COG2940 312 KSNVSKLKELLNSNGCKKRREPNVVQESEIKGYGVFALESIKKGEFIIEYHGEIIRRKEAREREENYDLLG----NEFSF 387 (480)
T ss_pred cccCccccchhhhcccccccchhhhhhhcccccceeehhhccchHHHHHhcCcccchHHHHhhhccccccc----cccch
Confidence 333333445666666677777788888999999999999999999988554 4455555555443211 11111
Q ss_pred hhhhhcCCCCCcceeEEEeccccCCcccccccCCCCCceEEEEEEeCCCcccEEEEEEccCCCCCCeEEEeCCCCCCC--
Q 018216 260 LVIREHLPSGKACLRMNIDATRIGNIARFINHSCDGGNLSTTLVRSSGSILPRLCFFASKDIKEGEELAFSYGEIRAR-- 337 (359)
Q Consensus 260 ~~~~~~~~~~~~~~~~~IDa~~~GN~aRFiNHSC~PNN~~~v~~~~~g~~~p~i~~fA~rdI~~GEELT~dYg~~~~~-- 337 (359)
..+... ..++|+...|+++|||||||.| |+........| .-++.++|+|||.+||||++||+.....
T Consensus 388 ~~~~~~--------~~~~d~~~~g~~~r~~nHS~~p-N~~~~~~~~~g--~~~~~~~~~rDI~~geEl~~dy~~~~~~~~ 456 (480)
T COG2940 388 GLLEDK--------DKVRDSQKAGDVARFINHSCTP-NCEASPIEVNG--IFKISIYAIRDIKAGEELTYDYGPSLEDNR 456 (480)
T ss_pred hhcccc--------chhhhhhhcccccceeecCCCC-Ccceecccccc--cceeeecccccchhhhhhccccccccccch
Confidence 111111 3679999999999999999999 78777666655 3489999999999999999999976322
Q ss_pred ------CCCceeecCCCCCccccC
Q 018216 338 ------PRGLPCYCGSTSCFGILP 355 (359)
Q Consensus 338 ------~~~~~C~CGs~~Crg~l~ 355 (359)
.....|.||+..|+++|.
T Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~ 480 (480)
T COG2940 457 ELKKLLEKRWGCACGEDRCSHTMS 480 (480)
T ss_pred hhhhhhhhhhccccCCCccCCCCC
Confidence 246789999999999874
No 12
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=99.40 E-value=5.2e-13 Score=113.94 Aligned_cols=54 Identities=35% Similarity=0.530 Sum_probs=40.9
Q ss_pred EEeccccCCcccccccCCCCCceEEEEEEeCCCcccEEEEEEccCCCCCCeEEEeCC
Q 018216 276 NIDATRIGNIARFINHSCDGGNLSTTLVRSSGSILPRLCFFASKDIKEGEELAFSYG 332 (359)
Q Consensus 276 ~IDa~~~GN~aRFiNHSC~PNN~~~v~~~~~g~~~p~i~~fA~rdI~~GEELT~dYg 332 (359)
..++.....++.|+||||.| |+...+....+. ..+.|.|.|+|++|||||++||
T Consensus 109 ~~~~~~l~p~~d~~NHsc~p-n~~~~~~~~~~~--~~~~~~a~r~I~~GeEi~isYG 162 (162)
T PF00856_consen 109 DRDGIALYPFADMLNHSCDP-NCEVSFDFDGDG--GCLVVRATRDIKKGEEIFISYG 162 (162)
T ss_dssp EEEEEEEETGGGGSEEESST-SEEEEEEEETTT--TEEEEEESS-B-TTSBEEEEST
T ss_pred cccccccCcHhHhecccccc-ccceeeEeeccc--ceEEEEECCccCCCCEEEEEEC
Confidence 45667778899999999999 665544422222 3899999999999999999998
No 13
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=99.02 E-value=9.8e-11 Score=118.78 Aligned_cols=150 Identities=30% Similarity=0.476 Sum_probs=105.4
Q ss_pred ceeecCC-CCCCCCCCCCccccCCCcccEEEEEeCCCCccceeccccCCCcEEEEecCHHHHHHHHHHhhcccCCCCCCc
Q 018216 179 IVSECGP-SCGCGSECGNRLTQRGISVRLKIVRSVNKGWGLYADQFIKQGQFICELLTTKEARRRQQIYDGLASSPRNSS 257 (359)
Q Consensus 179 ~i~EC~~-~C~C~~~C~Nrv~Q~g~~~~leV~~t~~kGwGlrA~~~I~~G~fI~E~i~~~e~~~r~~~~~~~~~~~~~~~ 257 (359)
..+||-+ .|.+...|.|+..-+..... +.+ +|..+|.+| |.+++...+...|...-.. ......
T Consensus 288 ~~~~~~p~~~~~~~~~~~~~~sk~~~~e------~~~----~~~~~~~k~--vg~~i~~~e~~~~~~~~~~---~~~~~~ 352 (463)
T KOG1081|consen 288 LAYEVHPKVCSAEERCHNQQFSKESYPE------PQK----TAKADIRKG--VGEVIDDKECKARLQRVKE---SDLVDF 352 (463)
T ss_pred hhhhhcccccccccccccchhhhhcccc------cch----hhHHhhhcc--cCcccchhhheeehhhhhc---cchhhh
Confidence 4566654 49988899998774443322 222 888899998 7888888776655433222 011111
Q ss_pred hhhhhhhcCCCCCcceeEEEeccccCCcccccccCCCCCceEEEEEEeCCCcccEEEEEEccCCCCCCeEEEeCCCCCCC
Q 018216 258 ALLVIREHLPSGKACLRMNIDATRIGNIARFINHSCDGGNLSTTLVRSSGSILPRLCFFASKDIKEGEELAFSYGEIRAR 337 (359)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~IDa~~~GN~aRFiNHSC~PNN~~~v~~~~~g~~~p~i~~fA~rdI~~GEELT~dYg~~~~~ 337 (359)
++..+..+ ..||+...||.+||+||||.| ++....+...+. .++++||.++|++|||||++|.....
T Consensus 353 ~~~~~e~~---------~~id~~~~~n~sr~~nh~~~~-~v~~~k~~~~~~--t~~~~~a~~~i~~g~e~t~~~n~~~~- 419 (463)
T KOG1081|consen 353 YMVFIQKD---------RIIDAGPKGNYSRFLNHSCQP-NVETEKWQVIGD--TRVGLFAPRQIEAGEELTFNYNGNCE- 419 (463)
T ss_pred hhhhhhcc---------cccccccccchhhhhcccCCC-ceeechhheecc--cccccccccccccchhhhheeecccc-
Confidence 22222221 279999999999999999999 665555544443 48999999999999999999986533
Q ss_pred CCCceeecCCCCCccccCC
Q 018216 338 PRGLPCYCGSTSCFGILPS 356 (359)
Q Consensus 338 ~~~~~C~CGs~~Crg~l~~ 356 (359)
...+.|.||+.+|.++++.
T Consensus 420 ~~~~~~~~~~e~~~~~~~k 438 (463)
T KOG1081|consen 420 GNEKRCCCGSENCTETKGK 438 (463)
T ss_pred CCcceEeecccccccCCcc
Confidence 4678999999999998864
No 14
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=98.89 E-value=2.7e-09 Score=110.78 Aligned_cols=298 Identities=24% Similarity=0.323 Sum_probs=203.9
Q ss_pred eeeeeCCchhhhhhHHHHh------ccCCcchhhhHhhhhhhhhhhcccccccccccccCCcCCCCeeeEeCCCCCCCCC
Q 018216 19 EVDEEQKQNQFLQWARLIL------PWLTPGELANVSLTCRTLSQISKSITLSRSLDASRSVENFPIPFHNAADKTPYAY 92 (359)
Q Consensus 19 ~~~~~~~~~~~~~~~~~v~------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiS~G~E~~pI~~vN~vD~~~~~~ 92 (359)
.++|-.|+|..++-..++- +||...|++.|.-...+-.-+...-..+..+|.+.|.+.+|||.+|.+|+..+|.
T Consensus 823 ~fVciy~g~~l~~~~sdks~~~~~~~~~~~id~~~f~~~~dt~~~~tvD~~g~d~~d~~~g~sg~~~p~~~~~d~~~~~~ 902 (1262)
T KOG1141|consen 823 NFVCIYPGGALLHQISDKSEYIHVTRSLLTIDCFSFDARIDTATYITVDDKGLDVADFSLGTSGIPIPLVNSVDNDEPPS 902 (1262)
T ss_pred eEEEEecchhhhhhhchhhhhcccchhhhcccccchhccccccceeeccccccchhhhhccccCCCCccccccccCCCcc
Confidence 4677789999988765544 6666667766655544443343333456679999999999999999999988887
Q ss_pred eEEcccccCCCCCCCCCCCCCccccccccccccccccccccCcccccccccCCCCCCCCCcCCCccCCCCCCCcCCCCCC
Q 018216 93 FIYTPSQIIPPPCPAQFPPRQFWASTNAAADAESNSSLSRLGFDSVSLVCESDESESGCDCEECFEVGLGDGVFGCPCFS 172 (359)
Q Consensus 93 f~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~C~~~~~~~gC~C~~~~~~~~~~~~~~c~C~~ 172 (359)
.+|......+- |.+.. +....+|+ +||+|...+.|. ..|.|.+
T Consensus 903 c~d~~~~~~~~-----------~~~~~---------s~~~~~~~------------~~~s~d~hp~d~-----~~~~~~~ 945 (1262)
T KOG1141|consen 903 CEDSKRRFQYN-----------DQVDI---------SSVSRDFC------------SGCSCDGHPSDA-----SKCECQQ 945 (1262)
T ss_pred ccccceeeccc-----------ccchh---------hhhccccc------------cccccCCCCccc-----CcccCCC
Confidence 77776543111 22111 11223443 567777666554 4555553
Q ss_pred C--------------------cc--------cccceeecCCCCCCCCCCCCccccCCCcccE--------EEEEeCCCCc
Q 018216 173 G--------------------LE--------DVGIVSECGPSCGCGSECGNRLTQRGISVRL--------KIVRSVNKGW 216 (359)
Q Consensus 173 ~--------------------~~--------~~~~i~EC~~~C~C~~~C~Nrv~Q~g~~~~l--------eV~~t~~kGw 216 (359)
+ .+ -....+||+..|.|...|.||++|.+.+.+. +||++...||
T Consensus 946 ~~~~~~~~cpp~~s~d~~~~~~eS~~~~ns~~~~~f~e~~~hss~~~~e~~~~v~~~~~~~me~~s~~~l~i~~~~~~~~ 1025 (1262)
T KOG1141|consen 946 LSIEAMKRCPPNLSFDGHDELYESSEKQNSFLKLFFFECNDHSSCHRKEYNRVVQNNIKYPMEVSSFNDLQIFKTAQSGW 1025 (1262)
T ss_pred CChhhhcCCCCccccCchhhhhhhhhhcchhhhccceeccccchhcccccchhhhcCCccceeeeecccccccccccccc
Confidence 2 00 0235689999999999999999999887764 5566778899
Q ss_pred cceeccccCCCcEEEEecCH----HHHH-HHH---HHhhc--------------------ccC-----------CC----
Q 018216 217 GLYADQFIKQGQFICELLTT----KEAR-RRQ---QIYDG--------------------LAS-----------SP---- 253 (359)
Q Consensus 217 GlrA~~~I~~G~fI~E~i~~----~e~~-~r~---~~~~~--------------------~~~-----------~~---- 253 (359)
|+++..+|+.-+||+++++. ..+. -|. ..|.. ... .+
T Consensus 1026 ~~~edtD~~~~~~~~~~~~~ppt~~l~~~~r~aqad~~sn~~D~~~~~~l~es~~~~~T~~r~~t~~~~~~~~~d~dd~q 1105 (1262)
T KOG1141|consen 1026 GVREDTDIPQSTFICTYVGAPPTDDLADELRNAQADQYSNDLDLKDTVELEESREDHETDFRGDTSDYDDEEGSDGDDGQ 1105 (1262)
T ss_pred cccccccCCCCcccccccCCCCchhhHHHHhhhhhccccCccchhhhhhhhhcccccccccCCCCCCCcccccccCccHH
Confidence 99999999999999977643 1111 111 00000 000 00
Q ss_pred --------------CC----------------------------CchhhhhhhcCCCCC-----------cceeEEEecc
Q 018216 254 --------------RN----------------------------SSALLVIREHLPSGK-----------ACLRMNIDAT 280 (359)
Q Consensus 254 --------------~~----------------------------~~~~~~~~~~~~~~~-----------~~~~~~IDa~ 280 (359)
.. ...+...+ ...+.. ...-|+|||+
T Consensus 1106 ~I~k~ve~qd~~~~~~~T~~~~RQ~~~~s~k~~~~~s~~~~~~ts~~~~~~d-kges~~~~~~~~~~y~~~~~~yvIDAk 1184 (1262)
T KOG1141|consen 1106 DIMKMVERQDSSESGEETKRLTRQKRKQSKKSGKGGSVEKDDTTSRDSMEKD-KGESKDEPVFNWDKYFEPFPLYVIDAK 1184 (1262)
T ss_pred HHHHHhhcccccccccccchhhhhhhhhhhhcccCccccccccCccchhhhc-cCccCcccccchhhccCCCceEEEecc
Confidence 00 00000000 000000 0013799999
Q ss_pred ccCCcccccccCCCCCc-eEEEEEEeCCCcccEEEEEEccCCCCCCeEEEeCCCC--CCCCCCceeecCCCCCcccc
Q 018216 281 RIGNIARFINHSCDGGN-LSTTLVRSSGSILPRLCFFASKDIKEGEELAFSYGEI--RARPRGLPCYCGSTSCFGIL 354 (359)
Q Consensus 281 ~~GN~aRFiNHSC~PNN-~~~v~~~~~g~~~p~i~~fA~rdI~~GEELT~dYg~~--~~~~~~~~C~CGs~~Crg~l 354 (359)
..||++||+||||.||. +|.|++++|+.++|+++|||.|-|+||+||||||+|. .+..+...|+||+.+|||+|
T Consensus 1185 ~eGNlGRfLNHSC~PNl~VQnVfvdTHdlrfPwVAFFt~kyVkAgtELTWDY~Ye~g~v~~keL~C~CGa~~CrgrL 1261 (1262)
T KOG1141|consen 1185 QEGNLGRFLNHSCDPNLHVQNVFVDTHDLRFPWVAFFTRKYVKAGTELTWDYQYEQGQVATKELTCHCGAENCRGRL 1261 (1262)
T ss_pred cccchhhhhccCCCccceeeeeeeeccccCCchhhhhhhhhhccCceeeeeccccccccccceEEEecChhhhhccc
Confidence 99999999999999953 3889999999999999999999999999999999997 67889999999999999998
No 15
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]
Probab=98.57 E-value=6.3e-08 Score=93.17 Aligned_cols=59 Identities=29% Similarity=0.437 Sum_probs=48.6
Q ss_pred CCcccccccCCCCCceEEEEEEeCCCcccEEEEEEccCCCCCCeEEEeCCCCCCCCCCceeecCC
Q 018216 283 GNIARFINHSCDGGNLSTTLVRSSGSILPRLCFFASKDIKEGEELAFSYGEIRARPRGLPCYCGS 347 (359)
Q Consensus 283 GN~aRFiNHSC~PNN~~~v~~~~~g~~~p~i~~fA~rdI~~GEELT~dYg~~~~~~~~~~C~CGs 347 (359)
-.-|+||||.|.| ||.++ .+++. ++.+.++|||+||||||--||...+..+...|.|-+
T Consensus 194 LGPaafINHDCrp-nCkFv--s~g~~---tacvkvlRDIePGeEITcFYgs~fFG~~N~~CeC~T 252 (453)
T KOG2589|consen 194 LGPAAFINHDCRP-NCKFV--STGRD---TACVKVLRDIEPGEEITCFYGSGFFGENNEECECVT 252 (453)
T ss_pred eccHHhhcCCCCC-Cceee--cCCCc---eeeeehhhcCCCCceeEEeecccccCCCCceeEEee
Confidence 3458999999999 66543 34333 899999999999999999999988888888999854
No 16
>cd01395 HMT_MBD Methyl-CpG binding domains (MBD) present in putative histone methyltransferases (HMT) such as CLLD8 and SETDB1 proteins; CLLD8 contains a MBD, a PreSET and a bifurcated SET domain, suggesting that CLLD8 might be associated with methylation-mediated transcriptional repression. SETDB1 and other proteins in this group have a similar domain architecture. SETDB1 is a novel KAP-1-associated histone H3, lysine 9-specific methyltransferase that contributes to HP1-mediated silencing of euchromatic genes by KRAB zinc-finger proteins.
Probab=98.03 E-value=1.2e-06 Score=64.02 Aligned_cols=30 Identities=13% Similarity=-0.031 Sum_probs=27.5
Q ss_pred cccceeeeeeCCchhhhhhHHHHhccCCcc
Q 018216 14 HKRTIEVDEEQKQNQFLQWARLILPWLTPG 43 (359)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~ 43 (359)
++...+|.|+||||++||++.||+.||..+
T Consensus 20 ~~~k~~V~Y~aPCGr~Lr~~~EV~~YL~~t 49 (60)
T cd01395 20 GKVKKHVIYKAPCGRSLRNMSEVHRYLRET 49 (60)
T ss_pred CCcccceEEECCcchhhhcHHHHHHHHHhc
Confidence 356788999999999999999999999988
No 17
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription]
Probab=97.88 E-value=8.9e-06 Score=81.16 Aligned_cols=116 Identities=21% Similarity=0.219 Sum_probs=75.7
Q ss_pred CcccEEEEEe--CCCCccceeccccCCCcEEEEecCHHHHHHHHHHhhcccCCCCCCchhhhhhhcCCCCCcceeEEEec
Q 018216 202 ISVRLKIVRS--VNKGWGLYADQFIKQGQFICELLTTKEARRRQQIYDGLASSPRNSSALLVIREHLPSGKACLRMNIDA 279 (359)
Q Consensus 202 ~~~~leV~~t--~~kGwGlrA~~~I~~G~fI~E~i~~~e~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IDa 279 (359)
+...|.++.+ ...|.||++...|++|+--+-+.++.-.....+.. +..+.-.++..+ ..-++||+
T Consensus 26 LP~~l~i~~Ssv~~~~lgV~s~~~i~~G~~FGP~~G~~~~~~~~~~~-----n~~y~W~I~~~d--------~~~~~iDg 92 (396)
T KOG2461|consen 26 LPPELRIKPSSVPVTGLGVWSNASILPGTSFGPFEGEIIASIDSKSA-----NNRYMWEIFSSD--------NGYEYIDG 92 (396)
T ss_pred CCCceEeeccccCCccccccccccccCcccccCccCccccccccccc-----cCcceEEEEeCC--------CceEEecc
Confidence 6677888876 47889999999999988777444331011111100 111111222111 02378998
Q ss_pred cc--cCCcccccccCCCCCceEEEEEEeCCCcccEEEEEEccCCCCCCeEEEeCCCC
Q 018216 280 TR--IGNIARFINHSCDGGNLSTTLVRSSGSILPRLCFFASKDIKEGEELAFSYGEI 334 (359)
Q Consensus 280 ~~--~GN~aRFiNHSC~PNN~~~v~~~~~g~~~p~i~~fA~rdI~~GEELT~dYg~~ 334 (359)
+. ..|+.||+|=+++. -.|+.+....+. .|.++|.|+|++||||.+.|+.+
T Consensus 93 ~d~~~sNWmRYV~~Ar~~-eeQNL~A~Q~~~---~Ifyrt~r~I~p~eELlVWY~~e 145 (396)
T KOG2461|consen 93 TDEEHSNWMRYVNSARSE-EEQNLLAFQIGE---NIFYRTIRDIRPNEELLVWYGSE 145 (396)
T ss_pred CChhhcceeeeecccCCh-hhhhHHHHhccC---ceEEEecccCCCCCeEEEEeccc
Confidence 76 78999999988886 334433333343 79999999999999999999976
No 18
>smart00570 AWS associated with SET domains. subdomain of PRESET
Probab=97.06 E-value=0.00029 Score=49.83 Aligned_cols=31 Identities=32% Similarity=0.767 Sum_probs=25.6
Q ss_pred CCCCCCcccccceeecCCCCCCCCCCCCccccCCC
Q 018216 168 CPCFSGLEDVGIVSECGPSCGCGSECGNRLTQRGI 202 (359)
Q Consensus 168 c~C~~~~~~~~~i~EC~~~C~C~~~C~Nrv~Q~g~ 202 (359)
..|+++ .+.+||+..|+|++.|+||.+|+..
T Consensus 20 sdClNR----~l~~EC~~~C~~G~~C~NqrFqk~~ 50 (51)
T smart00570 20 SDCLNR----MLLIECSSDCPCGSYCSNQRFQKRQ 50 (51)
T ss_pred hHHHHH----HHhhhcCCCCCCCcCccCcccccCc
Confidence 347775 5789998889999999999999863
No 19
>smart00508 PostSET Cysteine-rich motif following a subset of SET domains.
Probab=96.96 E-value=0.00043 Score=41.92 Aligned_cols=17 Identities=41% Similarity=1.087 Sum_probs=15.1
Q ss_pred CceeecCCCCCccccCC
Q 018216 340 GLPCYCGSTSCFGILPS 356 (359)
Q Consensus 340 ~~~C~CGs~~Crg~l~~ 356 (359)
.+.|+|||.+|||+|+.
T Consensus 2 ~~~C~CGs~~CRG~l~~ 18 (26)
T smart00508 2 KQPCLCGAPNCRGFLGX 18 (26)
T ss_pred CeeeeCCCccccceecc
Confidence 47999999999999954
No 20
>smart00391 MBD Methyl-CpG binding domain. Methyl-CpG binding domain, also known as the TAM (TTF-IIP5, ARBP, MeCP1) domain
Probab=96.12 E-value=0.0017 Score=50.09 Aligned_cols=31 Identities=10% Similarity=-0.003 Sum_probs=27.7
Q ss_pred cccceeeeeeCCchhhhhhHHHHhccCCcch
Q 018216 14 HKRTIEVDEEQKQNQFLQWARLILPWLTPGE 44 (359)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~ 44 (359)
.....+|.|.+|||+.||++.+|..||..+.
T Consensus 24 ~~~~~dV~Y~sP~GkklRs~~ev~~YL~~~~ 54 (77)
T smart00391 24 SAGKFDVYYISPCGKKLRSKSELARYLHKNG 54 (77)
T ss_pred CCCcccEEEECCCCCeeeCHHHHHHHHHhCC
Confidence 4567999999999999999999999997653
No 21
>cd00122 MBD MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD). The MBD consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1. The MBDs present in putative chromatin remodelling subunit, BAZ2A, and putative histone methyltransferase, CLLD8, represent two phylogenetically distinct groups within the MBD protein family.
Probab=95.71 E-value=0.0035 Score=46.21 Aligned_cols=29 Identities=10% Similarity=-0.074 Sum_probs=26.9
Q ss_pred ccceeeeeeCCchhhhhhHHHHhccCCcc
Q 018216 15 KRTIEVDEEQKQNQFLQWARLILPWLTPG 43 (359)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~v~~~l~~~ 43 (359)
....+|.|.+|||+.||++.+|..||..+
T Consensus 22 ~~k~dv~Y~sP~Gk~~Rs~~ev~~yL~~~ 50 (62)
T cd00122 22 AGKGDVYYYSPCGKKLRSKPEVARYLEKT 50 (62)
T ss_pred CCcceEEEECCCCceecCHHHHHHHHHhC
Confidence 56889999999999999999999999875
No 22
>cd01397 HAT_MBD Methyl-CpG binding domains (MBD) present in putative chromatin remodelling factor such as BAZ2A; BAZ2A contains a MBD, DDT, PHD-type zinc finger and Bromo domain suggesting that BAZ2A might be associated with histone acetyltransferase (HAT) activity. The Drosophila melanogaster toutatis protein, a putative subunit of the chromatin-remodeling complex, and other such proteins in this group share a similar domain architecture with BAZ2A, as does the Caenorhabditis elegans flectin homolog.
Probab=94.91 E-value=0.011 Score=45.09 Aligned_cols=29 Identities=14% Similarity=0.029 Sum_probs=26.1
Q ss_pred cccceeeeeeCCchhhhhhHHHHhccCCc
Q 018216 14 HKRTIEVDEEQKQNQFLQWARLILPWLTP 42 (359)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~v~~~l~~ 42 (359)
....-+|.|.||||+.||+..+|.+||..
T Consensus 21 ~~~~~dV~Y~aPcGKklRs~~ev~~yL~~ 49 (73)
T cd01397 21 GRIQGEVAYYAPCGKKLRQYPEVIKYLSK 49 (73)
T ss_pred CCccceEEEECCCCcccccHHHHHHHHHh
Confidence 45667999999999999999999999985
No 23
>PF01429 MBD: Methyl-CpG binding domain; InterPro: IPR001739 Methylation at CpG dinucleotide, the most common DNA modification in eukaryotes, has been correlated with gene silencing associated with various phenomena such as genomic imprinting, transposon and chromosome X inactivation, differentiation, and cancer. Effects of DNA methylation are mediated through proteins which bind to symmetrically methylated CpGs. Such proteins contain a specific domain of ~70 residues, the methyl-CpG-binding domain (MBD), which is linked to additional domains associated with chromatin, such as the bromodomain, the AT hook motif,the SET domain, or the PHD finger. MBD-containing proteins appear to act as structural proteins, which recruit a variety of histone deacetylase (HDAC) complexes and chromatin remodelling factors, leading to chromatin compaction and, consequently, to transcriptional repression. The MBD of MeCP2, MBD1, MBD2, MBD4 and BAZ2 mediates binding to DNA, in case of MeCP2, MBD1 and MBD2 preferentially to methylated CpG. In case of human MBD3 and SETDB1 the MBD has been shown to mediate protein-protein interactions [, ]. The MBD folds into an alpha/beta sandwich structure comprising a layer of twisted beta sheet, backed by another layer formed by the alpha1 helix and a hairpin loop at the C terminus. These layers are both amphipathic, with the alpha1 helix and the beta sheet lying parallel and the hydrophobic faces tightly packed against each other. The beta sheet is composed of two long inner strands (beta2 and beta3) sandwiched by two shorter outer strands (beta1 and beta4) [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 2KY8_A 1UB1_A 1D9N_A 1IG4_A 1QK9_A 3C2I_A.
Probab=94.72 E-value=0.011 Score=45.64 Aligned_cols=31 Identities=6% Similarity=-0.002 Sum_probs=27.5
Q ss_pred ccceeeeeeCCchhhhhhHHHHhccCCcchh
Q 018216 15 KRTIEVDEEQKQNQFLQWARLILPWLTPGEL 45 (359)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~ 45 (359)
....+|.|.+|||+.+|++.||++||..+..
T Consensus 28 ~~~~dv~Y~sP~Gk~~RS~~eV~~yL~~~~~ 58 (77)
T PF01429_consen 28 AGKKDVYYYSPCGKRFRSKKEVVRYLKENPS 58 (77)
T ss_dssp TTSEEEEEEETTSEEESSHHHHHHHHTTSS-
T ss_pred CCceEEEEECCCCCEEeCHHHHHHHHHhCCC
Confidence 3579999999999999999999999987763
No 24
>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics]
Probab=91.28 E-value=0.36 Score=48.68 Aligned_cols=40 Identities=38% Similarity=0.639 Sum_probs=30.0
Q ss_pred ccccCCCCCceEEEEEEeCCCcccEEEEEEccCCCCCC-eEEEeCCCC
Q 018216 288 FINHSCDGGNLSTTLVRSSGSILPRLCFFASKDIKEGE-ELAFSYGEI 334 (359)
Q Consensus 288 FiNHSC~PNN~~~v~~~~~g~~~p~i~~fA~rdI~~GE-ELT~dYg~~ 334 (359)
++||||.| |+. +. ..+. ...+.+...+.+++ ||+..|.+.
T Consensus 208 ~~~hsC~p-n~~-~~--~~~~---~~~~~~~~~~~~~~~~l~~~y~~~ 248 (482)
T KOG2084|consen 208 LFNHSCFP-NIS-VI--FDGR---GLALLVPAGIDAGEEELTISYTDP 248 (482)
T ss_pred hcccCCCC-CeE-EE--ECCc---eeEEEeecccCCCCCEEEEeeccc
Confidence 78999999 554 22 2333 57777888888887 999999866
No 25
>cd01396 MeCP2_MBD MeCP2, MBD1, MBD2, MBD3, and MBD4 are members of a protein family that share the methyl-CpG-binding domain (MBD). The MBD, consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1.
Probab=90.07 E-value=0.11 Score=39.98 Aligned_cols=29 Identities=7% Similarity=-0.006 Sum_probs=26.4
Q ss_pred ccceeeeeeCCchhhhhhHHHHhccCCcc
Q 018216 15 KRTIEVDEEQKQNQFLQWARLILPWLTPG 43 (359)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~v~~~l~~~ 43 (359)
....+|.|.+|+|..+|+..+|.+||...
T Consensus 23 ~~k~DvyY~sP~Gkk~RS~~ev~~yL~~~ 51 (77)
T cd01396 23 AGKFDVYYISPTGKKFRSKVELARYLEKN 51 (77)
T ss_pred CCcceEEEECCCCCEEECHHHHHHHHHhC
Confidence 56789999999999999999999999763
No 26
>KOG1337 consensus N-methyltransferase [General function prediction only]
Probab=82.14 E-value=1.1 Score=46.22 Aligned_cols=41 Identities=24% Similarity=0.386 Sum_probs=31.4
Q ss_pred ccccCCCCCceEEEEEEeCCCcccEEEEEEccCCCCCCeEEEeCCCC
Q 018216 288 FINHSCDGGNLSTTLVRSSGSILPRLCFFASKDIKEGEELAFSYGEI 334 (359)
Q Consensus 288 FiNHSC~PNN~~~v~~~~~g~~~p~i~~fA~rdI~~GEELT~dYg~~ 334 (359)
+.||++.+ ....+...+ +.+.+++.++|.+|||++++||..
T Consensus 239 ~~NH~~~~---~~~~~~~~d---~~~~l~~~~~v~~geevfi~YG~~ 279 (472)
T KOG1337|consen 239 LLNHSPEV---IKAGYNQED---EAVELVAERDVSAGEEVFINYGPK 279 (472)
T ss_pred hhccCchh---ccccccCCC---CcEEEEEeeeecCCCeEEEecCCC
Confidence 67999887 122333333 389999999999999999999964
No 27
>PF03638 TCR: Tesmin/TSO1-like CXC domain, cysteine-rich domain; InterPro: IPR005172 This entry includes proteins that have two copies of a cysteine rich motif as follows: C-X-C-X4-C-X3-YC-X-C-X6-C-X3-C-X-C-X2-C. The family includes Tesmin Q9Y4I5 from SWISSPROT [] and TSO1 Q9LE32 from SWISSPROT []. This group of proteins is called a CXC domain in [].
Probab=79.03 E-value=0.96 Score=30.72 Aligned_cols=37 Identities=32% Similarity=0.913 Sum_probs=27.1
Q ss_pred CCCCcCCCccCCCCCCCcCCCCCCCcccccceeecCCCCCCCCCCCCcc
Q 018216 149 SGCDCEECFEVGLGDGVFGCPCFSGLEDVGIVSECGPSCGCGSECGNRL 197 (359)
Q Consensus 149 ~gC~C~~~~~~~~~~~~~~c~C~~~~~~~~~i~EC~~~C~C~~~C~Nrv 197 (359)
.||.|...-... .||.|++ ....|++.|.| ..|.|+.
T Consensus 4 ~gC~Ckks~Clk-----~YC~Cf~------~g~~C~~~C~C-~~C~N~~ 40 (42)
T PF03638_consen 4 KGCNCKKSKCLK-----LYCECFQ------AGRFCTPNCKC-QNCKNTE 40 (42)
T ss_pred CCCcccCcChhh-----hhCHHHH------CcCcCCCCccc-CCCCCcC
Confidence 578886433233 6899987 36789999999 6788864
No 28
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=61.39 E-value=5.4 Score=26.98 Aligned_cols=31 Identities=29% Similarity=0.555 Sum_probs=25.6
Q ss_pred hhHHHHhccCCcchhhhHhhhhhhhhhhccc
Q 018216 31 QWARLILPWLTPGELANVSLTCRTLSQISKS 61 (359)
Q Consensus 31 ~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~ 61 (359)
+-..+|+.||.+.|+..++.+|+.+.++..+
T Consensus 7 Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~ 37 (47)
T PF12937_consen 7 EILLEIFSYLDPRDLLRLSLVCRRWRRIAND 37 (47)
T ss_dssp HHHHHHHTTS-HHHHHHHTTSSHHHHHHHTC
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHCC
Confidence 4567899999999999999999999877653
No 29
>PF08666 SAF: SAF domain; InterPro: IPR013974 This entry includes a range of different proteins, such as antifreeze proteins, flagellar FlgA proteins, and CpaB pilus proteins. ; PDB: 1C89_A 3NLA_A 3RDN_A 1C8A_A 3FRN_A 1WVO_A 3K3S_H 3G8R_B 1XUU_A 1XUZ_A ....
Probab=57.50 E-value=6.4 Score=28.11 Aligned_cols=15 Identities=27% Similarity=0.501 Sum_probs=11.4
Q ss_pred EEEEccCCCCCCeEE
Q 018216 314 CFFASKDIKEGEELA 328 (359)
Q Consensus 314 ~~fA~rdI~~GEELT 328 (359)
.+.|.|||++|+.|+
T Consensus 3 vvVA~~di~~G~~i~ 17 (63)
T PF08666_consen 3 VVVAARDIPAGTVIT 17 (63)
T ss_dssp EEEESSTB-TT-BEC
T ss_pred EEEEeCccCCCCEEc
Confidence 478999999999995
No 30
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=49.47 E-value=9.1 Score=25.67 Aligned_cols=33 Identities=24% Similarity=0.345 Sum_probs=26.5
Q ss_pred hhhHHHHhccCCcchhhhHhhhhhhhhhhcccc
Q 018216 30 LQWARLILPWLTPGELANVSLTCRTLSQISKSI 62 (359)
Q Consensus 30 ~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~ 62 (359)
...+.+|+.||.+.|+..++.+++.+.++....
T Consensus 8 ~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~ 40 (48)
T PF00646_consen 8 DEILQEILSYLDPKDLLRLSLVSKRWRSLVDSP 40 (48)
T ss_dssp HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTH
T ss_pred HHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCC
Confidence 356889999999999999999999998876654
No 31
>PF11403 Yeast_MT: Yeast metallothionein; InterPro: IPR022710 Metallothioneins are characterised by an abundance of cysteine residues and a lack of generic secondary structure motifs. This protein functions in primary metal storage, transport and detoxification []. For the first 40 residues in the protein the polypeptide wraps around the metal by forming two large parallel loops separated by a deep cleft containing the metal cluster []. ; PDB: 1AQS_A 1AQR_A 1RJU_V 1FMY_A 1AOO_A 1AQQ_A.
Probab=45.04 E-value=22 Score=22.83 Aligned_cols=18 Identities=28% Similarity=0.748 Sum_probs=8.2
Q ss_pred CCCCcCCCccCCCCCCCcCCCCC
Q 018216 149 SGCDCEECFEVGLGDGVFGCPCF 171 (359)
Q Consensus 149 ~gC~C~~~~~~~~~~~~~~c~C~ 171 (359)
..|+|..+|... .+|+|.
T Consensus 22 kscscptgcnsd-----dkcpcg 39 (40)
T PF11403_consen 22 KSCSCPTGCNSD-----DKCPCG 39 (40)
T ss_dssp TS-SS-TTTTSS-----TT--TT
T ss_pred hcCCCCCCCCCC-----CcCCCC
Confidence 567787776222 567774
No 32
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=42.78 E-value=18 Score=22.87 Aligned_cols=31 Identities=23% Similarity=0.267 Sum_probs=25.9
Q ss_pred hhHHHHhccCCcchhhhHhhhhhhhhhhccc
Q 018216 31 QWARLILPWLTPGELANVSLTCRTLSQISKS 61 (359)
Q Consensus 31 ~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~ 61 (359)
..+.+|+.||.+.|+..+...++.+..+...
T Consensus 4 ~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~ 34 (41)
T smart00256 4 EILEEILSKLPPKDLLRLRKVSRRWRSLIDS 34 (41)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 3467889999999999999999998776654
No 33
>KOG2155 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=39.91 E-value=17 Score=37.09 Aligned_cols=49 Identities=14% Similarity=0.186 Sum_probs=33.3
Q ss_pred cccccccCCCCCceEEEEEEeCCCcccEEEEEEccCCCCCCeEEEeCCCC
Q 018216 285 IARFINHSCDGGNLSTTLVRSSGSILPRLCFFASKDIKEGEELAFSYGEI 334 (359)
Q Consensus 285 ~aRFiNHSC~PNN~~~v~~~~~g~~~p~i~~fA~rdI~~GEELT~dYg~~ 334 (359)
++..+.||-+| |.........-.....-.++-+|++..|||+|-|+-..
T Consensus 204 fGsrvrHsdeP-nf~~aPf~fmPq~vaYsimwp~k~~~tgeE~trDfasg 252 (631)
T KOG2155|consen 204 FGSRVRHSDEP-NFRIAPFMFMPQNVAYSIMWPTKPVNTGEEITRDFASG 252 (631)
T ss_pred hhhhhccCCCC-cceeeeheecchhcceeEEeeccCCCCchHHHHHHhhc
Confidence 45568999999 66443322222333456688999999999999887543
No 34
>smart00858 SAF This domain family includes a range of different proteins. Such as antifreeze proteins and flagellar FlgA proteins, and CpaB pilus proteins.
Probab=30.46 E-value=34 Score=24.17 Aligned_cols=16 Identities=25% Similarity=0.474 Sum_probs=13.6
Q ss_pred EEEEccCCCCCCeEEE
Q 018216 314 CFFASKDIKEGEELAF 329 (359)
Q Consensus 314 ~~fA~rdI~~GEELT~ 329 (359)
.+.|.++|++|+.|+-
T Consensus 3 v~va~~~i~~G~~i~~ 18 (64)
T smart00858 3 VVVAARDLPAGEVITA 18 (64)
T ss_pred EEEEeCccCCCCCcch
Confidence 4678999999999984
No 35
>PF01847 VHL: von Hippel-Lindau disease tumour suppressor protein; InterPro: IPR022772 Von Hippel-Lindau disease tumor suppressor (VHL) has two domains: a roughly 100-residue N-terminal domain rich in beta sheet (beta domain) and a smaller alpha-helical domain (alpha domain), held together by two linkers and a polar interface. A large portion of the alpha domain surface, and a small portion of the beta domain, interact with ElonginC. About half of the tumorigenic mutations map to the alpha domain and its residues that contact ElonginC. The remaining mutations map to the beta domain, and significantly, to a beta domain surface patch uninvolved in ElonginC binding. This suggests that two intact macromolecular binding sites may be required for the tumor suppressor effects of VHL []. This entry represents both beta and alpha domains of VHL.; PDB: 3ZRF_L 3ZRC_C 1LM8_V 1LQB_C 1VCB_F.
Probab=24.41 E-value=84 Score=27.56 Aligned_cols=38 Identities=18% Similarity=0.273 Sum_probs=20.5
Q ss_pred cccccccCCCCCceEEEEEEeCCCcccEEEEEEccCCCCCCeEEEe
Q 018216 285 IARFINHSCDGGNLSTTLVRSSGSILPRLCFFASKDIKEGEELAFS 330 (359)
Q Consensus 285 ~aRFiNHSC~PNN~~~v~~~~~g~~~p~i~~fA~rdI~~GEELT~d 330 (359)
..+|+|+|..+ +...+++..|. -..| ..++||++..++
T Consensus 16 ~V~F~N~s~r~--V~v~Wldy~G~----~~~Y--~~L~Pg~~~~~~ 53 (156)
T PF01847_consen 16 FVRFVNRSPRT--VDVYWLDYDGK----PVPY--GTLKPGQGRRQN 53 (156)
T ss_dssp EEEEEE-SSS---EEEEEE-TTS-----EEE-----B-TTEEEEEE
T ss_pred EEEEEECCCCE--EEEEEEcCCCc----Eeec--cccCCCCeEEcc
Confidence 35799999775 56677777774 2333 347888877543
No 36
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=24.03 E-value=86 Score=24.30 Aligned_cols=16 Identities=25% Similarity=0.250 Sum_probs=13.8
Q ss_pred ccceeccccCCCcEEE
Q 018216 216 WGLYADQFIKQGQFIC 231 (359)
Q Consensus 216 wGlrA~~~I~~G~fI~ 231 (359)
..++|.++|++|+=|.
T Consensus 98 ~~~~a~r~I~~GeEi~ 113 (116)
T smart00317 98 IVIFALRDIKPGEELT 113 (116)
T ss_pred EEEEECCCcCCCCEEe
Confidence 6788999999999764
No 37
>cd05468 pVHL von Hippel-Landau (pVHL) tumor suppressor protein. von Hippel-Landau (pVHL) protein, the gene product of VHL, is a critical regulator of the ubiquitous oxygen-sensing pathway. It is conserved throughout evolution, as its homologs are found in organisms ranging from mammals to the Drosophila melanogaster, Anopheles gambiae insects and the Caenorhabditis elegans nematode. pVHL acts as the substrate recognition component of an E3 ubiquitin ligase complex. Several proteins have been identified as pVHL-binding proteins that are subject to ubiquitin-mediated proteolysis; the best characterized putative substrates are the alpha subunits of the hypoxia-inducible factor (HIF1alpha, HIF2alpha, and HIF3alpha). In addition to HIF degradation, pVHL has been implicated to be involved in HIF independent cellular processes. Germline VHL mutations cause renal cell carcinomas, hemangioblastomas and pheochromocytomas in humans. pVHL can bind to and direct the proper deposition of fibronecti
Probab=23.22 E-value=1.1e+02 Score=26.15 Aligned_cols=37 Identities=16% Similarity=0.324 Sum_probs=25.0
Q ss_pred ccccccCCCCCceEEEEEEeCCCcccEEEEEEccCCCCCCeEEEe
Q 018216 286 ARFINHSCDGGNLSTTLVRSSGSILPRLCFFASKDIKEGEELAFS 330 (359)
Q Consensus 286 aRFiNHSC~PNN~~~v~~~~~g~~~p~i~~fA~rdI~~GEELT~d 330 (359)
.+|+|++-.| ++..+++..|. -..|+ .|+||++.+.+
T Consensus 11 v~F~N~t~~~--v~~~Wid~~G~----~~~Y~--~l~pg~~~~~~ 47 (141)
T cd05468 11 VRFVNRTDRP--VELYWIDYDGK----PVSYG--TLQPGETVRQN 47 (141)
T ss_pred EEEEeCCCCe--EEEEEECCCCC----EEEee--eeCCCCEEeec
Confidence 4689999654 66667777774 33444 48888887654
No 38
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=22.37 E-value=26 Score=36.14 Aligned_cols=138 Identities=10% Similarity=-0.048 Sum_probs=72.0
Q ss_pred eCCCCcc---ceeccccCCCcEEEEecCHHHHHHHHHHhhcccCCCCCCc-hhhhhhhcCCCCCcceeEEEeccccCCcc
Q 018216 211 SVNKGWG---LYADQFIKQGQFICELLTTKEARRRQQIYDGLASSPRNSS-ALLVIREHLPSGKACLRMNIDATRIGNIA 286 (359)
Q Consensus 211 t~~kGwG---lrA~~~I~~G~fI~E~i~~~e~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~IDa~~~GN~a 286 (359)
.+..+|+ .+|.+.+..|++|...++.........-.+..-....... -.+.. .........++...|+..
T Consensus 120 ~~~c~~~~~d~~~~~~~~~~~~vw~~vg~~~~~~c~vc~~~~~~~~~~~~~~~f~~------~~~~~~~~~~~~~~g~~~ 193 (463)
T KOG1081|consen 120 LEKCSKRCTDCRAFKKREVGDLVWSKVGEYPWWPCMVCHDPLLPKGMKHDHVNFFG------CYAWTHEKRVFPYEGQSS 193 (463)
T ss_pred CcccccCCcceeeeccccceeEEeEEcCcccccccceecCcccchhhccccceecc------chhhHHHhhhhhccchHH
Confidence 4455666 8888899999999976665322111000000000000000 00000 000111234445599999
Q ss_pred cccccCCCCCceEEEEEEeCCCcccEEEEEEccCCCCCCe------EEEeCCCCCCCCCCceeecCCCCCccccCCCC
Q 018216 287 RFINHSCDGGNLSTTLVRSSGSILPRLCFFASKDIKEGEE------LAFSYGEIRARPRGLPCYCGSTSCFGILPSEN 358 (359)
Q Consensus 287 RFiNHSC~PNN~~~v~~~~~g~~~p~i~~fA~rdI~~GEE------LT~dYg~~~~~~~~~~C~CGs~~Crg~l~~~~ 358 (359)
++++|++.|+-........ + .+++..++.+.++-++- ++.+|....+ .....+.+.+..|...+....
T Consensus 194 ~~l~~~~~~~s~~~~~~~~-~--~~r~~~~~~q~~~~~~~~e~k~~~~~~~~~~~~-~~~~~~~~~~~~~~~k~~~~~ 267 (463)
T KOG1081|consen 194 KLIPHSKKPASTMSEKIKE-A--KARFGKLKAQWEAGIKQKELKPEEYKRIKVVCP-IGDQQIYSAAVSCIKKLLAKP 267 (463)
T ss_pred Hhhhhccccchhhhhhhhc-c--cchhhhcccchhhccchhhcccccccccccccC-cCcccccchhhhhhhhccccc
Confidence 9999999995333222222 1 24677777777666655 5555554322 233447888888877666544
No 39
>KOG4289 consensus Cadherin EGF LAG seven-pass G-type receptor [Signal transduction mechanisms]
Probab=21.75 E-value=1.5e+02 Score=35.08 Aligned_cols=78 Identities=18% Similarity=0.357 Sum_probs=40.3
Q ss_pred CCCCCcCCCccCCCCCCCcCCCCCCCcccccceeecCCC--CCCCC--------CCCCccc----------cCCCcccEE
Q 018216 148 ESGCDCEECFEVGLGDGVFGCPCFSGLEDVGIVSECGPS--CGCGS--------ECGNRLT----------QRGISVRLK 207 (359)
Q Consensus 148 ~~gC~C~~~~~~~~~~~~~~c~C~~~~~~~~~i~EC~~~--C~C~~--------~C~Nrv~----------Q~g~~~~le 207 (359)
.--|.|+..-.... .+.-.|.|.- .....||... |+|.+ .|.|-.. ..+-.+.+|
T Consensus 1789 ~G~CqCKe~hy~~~-~~Cl~CdC~~----Gs~Sr~C~adGqC~C~pgaiGRqCdrCd~pfaevttlgCrv~y~~CPk~ie 1863 (2531)
T KOG4289|consen 1789 NGQCQCKENHYRPI-GSCLPCDCYF----GSDSRECDADGQCPCKPGAIGRQCDRCDNPFAEVTTLGCRVVYDKCPKAIE 1863 (2531)
T ss_pred CcceeeccccccCC-Ccceeecccc----CCCcccccCCCcCCCCCccccccccccCChhhhccccCcEEccccCcHHHh
Confidence 34577764332221 1135677762 1356789865 88874 4665422 111111111
Q ss_pred EE-EeCCCCccceeccccCCCcEE
Q 018216 208 IV-RSVNKGWGLYADQFIKQGQFI 230 (359)
Q Consensus 208 V~-~t~~kGwGlrA~~~I~~G~fI 230 (359)
-. .=+..-+|+-|..+-|+|++=
T Consensus 1864 ~giwWP~tkfG~~a~~pCP~G~~G 1887 (2531)
T KOG4289|consen 1864 AGIWWPQTKFGSPAAVPCPKGSSG 1887 (2531)
T ss_pred hcccccccccCCcccccCCCCcch
Confidence 11 012334688888888888873
No 40
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=20.32 E-value=55 Score=32.19 Aligned_cols=20 Identities=40% Similarity=0.499 Sum_probs=17.7
Q ss_pred EEEEEEccCCCCCCeEEEeC
Q 018216 312 RLCFFASKDIKEGEELAFSY 331 (359)
Q Consensus 312 ~i~~fA~rdI~~GEELT~dY 331 (359)
|-.++|.+||++||.||.+-
T Consensus 277 rrsl~a~~di~~G~~lt~~~ 296 (329)
T TIGR03569 277 RKSLVAAKDIKKGEIFTEDN 296 (329)
T ss_pred ceEEEEccCcCCCCEecHHh
Confidence 67899999999999999764
Done!