BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018217
         (359 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4AP2|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a
           Resolution
 pdb|4APF|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 3.1a
           Resolution
          Length = 297

 Score = 35.8 bits (81), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 37/181 (20%), Positives = 75/181 (41%), Gaps = 13/181 (7%)

Query: 3   LLNFMYSNTLSTTAAPALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSS 62
           ++ +MY+  +  +   ++ +VL  AD+F +     +C   L+          ++  L   
Sbjct: 114 VIEYMYTGRIRVSTG-SVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIH-SLAHM 171

Query: 63  VLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMALPLAGVEAILSSDDLQIASEDAVYDF 122
             + +      D  R+      +D     +E   LP   +   LS  ++ + SE+ +++ 
Sbjct: 172 YTLSQLALKAADMIRRNFHKVIQD-----EEFYTLPFHLIRDWLSDLEITVDSEEVLFET 226

Query: 123 VLKWARAQYPRVEERREVLGSRLARFIRFPHMTCRKLKKVLTCNDF--DHDVASKLVLEA 180
           VLKW +    R  E RE     L + +R   M    L + +       +++V  KLV +A
Sbjct: 227 VLKWVQ----RNAEERERYFEELFKLLRLSQMKPTYLTRHVKPERLVANNEVCVKLVADA 282

Query: 181 L 181
           +
Sbjct: 283 V 283


>pdb|3I3N|A Chain A, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
 pdb|3I3N|B Chain B, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
          Length = 279

 Score = 33.5 bits (75), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 39/184 (21%), Positives = 76/184 (41%), Gaps = 19/184 (10%)

Query: 3   LLNFMYSNTLSTTAAPALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSS 62
           ++ + Y+  +  +   ++ +VL  AD+F +     +C   L+          ++  L   
Sbjct: 96  VIEYXYTGRIRVSTG-SVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIH-SLAHX 153

Query: 63  VLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMALPLAGVEAILSSDDLQIASEDAVYDF 122
             + +      D  R+      +D     +E   LP   +   LS  ++ + SE+ +++ 
Sbjct: 154 YTLSQLALKAADXIRRNFHKVIQD-----EEFYTLPFHLIRDWLSDLEITVDSEEVLFET 208

Query: 123 VLKWARAQYPRVEERREVLGSRLARFIRF----PHMTCRKLK-KVLTCNDFDHDVASKLV 177
           VLKW +    R  E RE     L + +R     P    R +K + L  N+   +V  KLV
Sbjct: 209 VLKWVQ----RNAEERERYFEELFKLLRLSQXKPTYLTRHVKPERLVANN---EVCVKLV 261

Query: 178 LEAL 181
            +A+
Sbjct: 262 ADAV 265


>pdb|4DIU|A Chain A, Crystal Structure Of Engineered Protein. Northeast
           Structural Genomics Consortium Target Or94
          Length = 248

 Score = 31.2 bits (69), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 16/68 (23%), Positives = 38/68 (55%), Gaps = 2/68 (2%)

Query: 96  ALPLAGVEAILSSDDLQIASEDAVYDFVLKWARAQYPRVEERREVLGSRLARFIRFPHMT 155
            +P+ G+  + +   + I SE+ +Y+ VL++AR    R  +  E +   + +F + P +T
Sbjct: 105 TVPIEGIVTMCAP--MYIKSEETMYEGVLEYAREYKKREGKSEEQIEQEMEKFKQTPMLT 162

Query: 156 CRKLKKVL 163
            + L++++
Sbjct: 163 LKALQELI 170


>pdb|1TQH|A Chain A, Covalent Reaction Intermediate Revealed In Crystal
           Structure Of The Geobacillus Stearothermophilus
           Carboxylesterase Est30
          Length = 247

 Score = 30.0 bits (66), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 16/68 (23%), Positives = 37/68 (54%), Gaps = 2/68 (2%)

Query: 96  ALPLAGVEAILSSDDLQIASEDAVYDFVLKWARAQYPRVEERREVLGSRLARFIRFPHMT 155
            +P+ G+  + +   + I SE+ +Y+ VL++AR    R  +  E +   + +F + P  T
Sbjct: 106 TVPIEGIVTMCAP--MYIKSEETMYEGVLEYAREYKKREGKSEEQIEQEMEKFKQTPMKT 163

Query: 156 CRKLKKVL 163
            + L++++
Sbjct: 164 LKALQELI 171


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.136    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,650,630
Number of Sequences: 62578
Number of extensions: 369348
Number of successful extensions: 959
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 956
Number of HSP's gapped (non-prelim): 5
length of query: 359
length of database: 14,973,337
effective HSP length: 100
effective length of query: 259
effective length of database: 8,715,537
effective search space: 2257324083
effective search space used: 2257324083
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)