Query 018217
Match_columns 359
No_of_seqs 264 out of 1706
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 07:07:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018217.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018217hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4441 Proteins containing BT 100.0 5.6E-48 1.2E-52 396.8 24.1 317 2-338 90-461 (571)
2 PHA02713 hypothetical protein; 100.0 2.5E-41 5.5E-46 347.9 20.9 299 2-336 81-447 (557)
3 PHA02790 Kelch-like protein; P 100.0 5.7E-40 1.2E-44 332.8 23.7 304 2-337 76-431 (480)
4 PHA03098 kelch-like protein; P 100.0 3.1E-38 6.7E-43 324.1 24.0 241 2-258 61-351 (534)
5 PF07707 BACK: BTB And C-termi 99.8 1.7E-21 3.7E-26 156.5 5.7 103 53-164 1-103 (103)
6 smart00875 BACK BTB And C-term 99.8 1E-18 2.3E-23 139.1 9.1 99 53-161 1-99 (101)
7 KOG4350 Uncharacterized conser 99.7 2.4E-17 5.2E-22 157.0 7.5 164 2-182 98-263 (620)
8 KOG2075 Topoisomerase TOP1-int 99.6 2.3E-15 5E-20 146.6 9.7 232 2-257 173-415 (521)
9 KOG4682 Uncharacterized conser 99.2 2.2E-11 4.8E-16 116.6 6.5 117 4-127 128-245 (488)
10 KOG4441 Proteins containing BT 98.9 4.9E-08 1.1E-12 101.4 17.1 295 17-337 136-507 (571)
11 KOG4591 Uncharacterized conser 98.8 8E-09 1.7E-13 90.8 6.4 103 3-112 121-224 (280)
12 PHA02713 hypothetical protein; 98.6 2.9E-07 6.3E-12 95.5 11.6 131 208-342 352-546 (557)
13 PHA03098 kelch-like protein; P 98.4 3.8E-06 8.2E-11 86.6 13.3 89 14-107 105-212 (534)
14 PHA02790 Kelch-like protein; P 98.2 7.8E-06 1.7E-10 83.4 9.4 119 208-335 319-476 (480)
15 PF00651 BTB: BTB/POZ domain; 97.6 2.1E-05 4.5E-10 63.3 0.7 43 2-45 66-109 (111)
16 KOG0783 Uncharacterized conser 97.5 5E-05 1.1E-09 79.3 2.1 82 3-89 766-852 (1267)
17 TIGR03547 muta_rot_YjhT mutatr 97.4 0.0006 1.3E-08 66.3 8.9 38 217-258 168-209 (346)
18 smart00225 BTB Broad-Complex, 97.4 9.4E-05 2E-09 56.1 1.9 38 2-40 53-90 (90)
19 TIGR03548 mutarot_permut cycli 97.1 0.0021 4.7E-08 61.9 8.5 47 208-258 124-180 (323)
20 PRK14131 N-acetylneuraminic ac 97.1 0.0041 8.9E-08 61.5 10.6 38 217-258 189-230 (376)
21 smart00612 Kelch Kelch domain. 97.0 0.00091 2E-08 44.7 4.0 31 216-246 14-47 (47)
22 PLN02153 epithiospecifier prot 96.8 0.0044 9.5E-08 60.3 8.3 47 208-258 86-146 (341)
23 TIGR03548 mutarot_permut cycli 96.8 0.0046 1E-07 59.6 8.2 112 208-337 73-202 (323)
24 PLN02193 nitrile-specifier pro 96.5 0.017 3.6E-07 59.0 10.2 47 208-258 229-287 (470)
25 TIGR03547 muta_rot_YjhT mutatr 96.5 0.004 8.6E-08 60.6 5.3 38 218-259 291-331 (346)
26 PRK14131 N-acetylneuraminic ac 96.0 0.0082 1.8E-07 59.3 4.8 37 218-258 313-352 (376)
27 KOG4693 Uncharacterized conser 95.6 0.017 3.8E-07 53.8 4.6 47 208-258 89-148 (392)
28 PLN02153 epithiospecifier prot 95.5 0.026 5.7E-07 54.8 6.1 39 216-258 216-260 (341)
29 PF13964 Kelch_6: Kelch motif 95.0 0.038 8.2E-07 37.9 3.9 29 208-236 12-50 (50)
30 PF13854 Kelch_5: Kelch motif 94.4 0.045 9.8E-07 36.3 3.0 24 232-259 1-24 (42)
31 cd03772 MATH_HAUSP Herpesvirus 94.0 0.39 8.4E-06 40.3 8.7 111 245-358 16-133 (137)
32 KOG4693 Uncharacterized conser 94.0 0.21 4.5E-06 46.8 7.3 107 218-338 217-329 (392)
33 PLN02193 nitrile-specifier pro 93.9 0.1 2.2E-06 53.2 5.9 39 216-258 342-386 (470)
34 cd03774 MATH_SPOP Speckle-type 93.4 0.38 8.2E-06 40.4 7.5 111 245-358 22-137 (139)
35 PF01344 Kelch_1: Kelch motif; 93.1 0.072 1.6E-06 35.7 2.2 21 235-259 1-21 (47)
36 PF13964 Kelch_6: Kelch motif 92.7 0.11 2.4E-06 35.5 2.7 21 235-259 1-21 (50)
37 PF13415 Kelch_3: Galactose ox 92.6 0.17 3.7E-06 34.5 3.6 29 216-244 18-49 (49)
38 KOG0379 Kelch repeat-containin 92.2 0.31 6.6E-06 50.0 6.4 39 216-254 189-233 (482)
39 cd00121 MATH MATH (meprin and 92.1 0.57 1.2E-05 37.4 6.7 108 244-356 14-126 (126)
40 PF01466 Skp1: Skp1 family, di 92.1 0.082 1.8E-06 40.2 1.5 31 14-45 11-41 (78)
41 KOG0379 Kelch repeat-containin 92.0 0.27 6E-06 50.3 5.7 38 217-258 139-182 (482)
42 PF11822 DUF3342: Domain of un 91.7 0.027 5.9E-07 53.9 -1.8 37 69-105 89-125 (317)
43 PF07646 Kelch_2: Kelch motif; 91.0 0.23 5E-06 33.8 2.8 20 235-258 1-20 (49)
44 KOG4350 Uncharacterized conser 90.8 0.46 9.9E-06 46.9 5.5 114 18-163 148-262 (620)
45 PF01344 Kelch_1: Kelch motif; 90.2 0.33 7.2E-06 32.4 3.0 17 216-232 27-43 (47)
46 PLN02772 guanylate kinase 88.1 1 2.2E-05 44.8 5.8 44 208-251 35-92 (398)
47 cd03773 MATH_TRIM37 Tripartite 86.8 2.4 5.3E-05 34.9 6.7 106 245-355 21-129 (132)
48 PF00917 MATH: MATH domain; I 86.5 1.6 3.4E-05 34.8 5.2 98 251-357 17-119 (119)
49 KOG1230 Protein containing rep 84.5 2.5 5.4E-05 42.1 6.2 103 217-338 98-224 (521)
50 PF11822 DUF3342: Domain of un 81.9 0.77 1.7E-05 44.1 1.6 51 3-60 61-111 (317)
51 cd03775 MATH_Ubp21p Ubiquitin- 79.0 15 0.00033 30.4 8.5 106 245-355 14-133 (134)
52 KOG2716 Polymerase delta-inter 76.8 1.4 3E-05 40.6 1.6 44 2-45 59-103 (230)
53 KOG1724 SCF ubiquitin ligase, 75.2 2.2 4.7E-05 37.2 2.3 31 14-45 95-125 (162)
54 PF13418 Kelch_4: Galactose ox 75.1 2.5 5.4E-05 28.4 2.2 21 235-259 1-22 (49)
55 KOG1230 Protein containing rep 73.5 7.6 0.00016 38.8 5.8 39 216-258 206-251 (521)
56 PF07707 BACK: BTB And C-termi 70.6 14 0.00029 28.6 5.8 82 21-105 2-101 (103)
57 KOG0511 Ankyrin repeat protein 69.5 2.8 6.1E-05 41.1 1.8 93 3-101 349-446 (516)
58 PF02214 BTB_2: BTB/POZ domain 66.6 1.1 2.3E-05 34.9 -1.4 37 3-39 56-94 (94)
59 KOG2075 Topoisomerase TOP1-int 62.5 18 0.00038 36.8 5.9 45 47-99 184-228 (521)
60 KOG1987 Speckle-type POZ prote 60.4 7.8 0.00017 36.6 3.0 81 3-89 155-240 (297)
61 PF13799 DUF4183: Domain of un 58.9 8.3 0.00018 29.8 2.3 44 312-357 5-61 (84)
62 KOG1665 AFH1-interacting prote 57.4 5.3 0.00011 36.6 1.2 39 3-41 67-105 (302)
63 COG3055 Uncharacterized protei 55.2 14 0.0003 36.3 3.6 38 217-258 113-155 (381)
64 KOG4152 Host cell transcriptio 54.2 23 0.00049 36.5 5.1 38 218-259 231-274 (830)
65 PF11512 Atu4866: Agrobacteriu 51.9 15 0.00032 27.8 2.6 39 305-351 32-70 (78)
66 COG5201 SKP1 SCF ubiquitin lig 51.2 7.8 0.00017 32.4 1.1 28 18-45 93-120 (158)
67 COG4025 Predicted membrane pro 50.8 13 0.00029 34.2 2.7 37 274-312 213-249 (284)
68 smart00875 BACK BTB And C-term 46.9 1.1E+02 0.0023 23.0 7.1 24 22-45 3-26 (101)
69 KOG2838 Uncharacterized conser 45.4 9.7 0.00021 35.9 0.9 37 20-57 361-397 (401)
70 KOG4152 Host cell transcriptio 44.5 25 0.00053 36.2 3.6 47 208-258 43-100 (830)
71 PF07713 DUF1604: Protein of u 42.7 9.3 0.0002 29.6 0.3 14 316-329 23-36 (87)
72 smart00061 MATH meprin and TRA 37.5 1.2E+02 0.0025 22.4 5.9 75 244-326 14-92 (95)
73 cd03776 MATH_TRAF6 Tumor Necro 35.6 1.1E+02 0.0024 25.6 5.9 25 332-356 119-147 (147)
74 PF00651 BTB: BTB/POZ domain; 34.5 32 0.00069 26.7 2.3 30 50-83 81-110 (111)
75 PF07250 Glyoxal_oxid_N: Glyox 32.5 59 0.0013 30.3 4.0 41 215-259 89-138 (243)
76 COG3002 Uncharacterized protei 27.5 29 0.00064 36.6 1.1 60 291-358 760-823 (880)
77 PF09874 DUF2101: Predicted me 27.2 54 0.0012 29.5 2.6 36 274-311 143-178 (206)
78 cd00270 MATH_TRAF_C Tumor Necr 23.7 4.2E+02 0.0091 21.8 9.4 24 332-355 121-148 (149)
79 PF08766 DEK_C: DEK C terminal 21.1 2.2E+02 0.0048 19.5 4.4 39 100-141 7-45 (54)
No 1
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=5.6e-48 Score=396.79 Aligned_cols=317 Identities=21% Similarity=0.354 Sum_probs=263.3
Q ss_pred ceeeeEeeCeEeeCCcchHHHHHHHhhccChhhHHHHHHHHccCCCCChhhHHHHHHhccccccccChHHHHHHHHHHHh
Q 018217 2 ELLNFMYSNTLSTTAAPALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLA 81 (359)
Q Consensus 2 ~lL~y~YTg~i~i~~~~nV~~lL~aA~~lqv~~l~~~C~~fL~~~~l~~~Ncl~i~~~A~~~~~~~~~~~L~~~a~~fi~ 81 (359)
.||+|+|||++.|++ +||++||.||++|||+.++++|++||.+ +|+++||++|+.||+.| +|++|.+.|..||.
T Consensus 90 ~ll~y~Yt~~i~i~~-~nVq~ll~aA~~lQi~~v~~~C~~fL~~-~l~~~Nclgi~~~a~~~----~~~~L~~~a~~~i~ 163 (571)
T KOG4441|consen 90 LLLDYAYTGKLEISE-DNVQELLEAASLLQIPEVVDACCEFLES-QLDPSNCLGIRRFAELH----SCTELLEVADEYIL 163 (571)
T ss_pred HHHHHhhcceEEech-HhHHHHHHHHHHhhhHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhc----CcHHHHHHHHHHHH
Confidence 479999999999998 9999999999999999999999999999 89999999999999965 99999999999999
Q ss_pred cchhhhhcccccccccCHHHHHHHhcCCCcccCChHHHHHHHHHhhhhcCCChHHHHHHHhHhhhccccCCCCCHHHHHh
Q 018217 82 SRYKDMTKFQDEVMALPLAGVEAILSSDDLQIASEDAVYDFVLKWARAQYPRVEERREVLGSRLARFIRFPHMTCRKLKK 161 (359)
Q Consensus 82 ~nf~~v~~~~~eFl~L~~~~l~~lL~sd~L~V~sE~~Vf~avl~Wv~~d~~~~~~R~~~l~~~LL~~VRf~ll~~~~L~~ 161 (359)
+||.++.+ ++||++||.+++..||++|+|+|.+|+.||+|+++|++|| .++|++++ +.||++||||+|++++|.+
T Consensus 164 ~~F~~v~~-~eefl~L~~~~l~~ll~~d~l~v~~E~~vf~a~~~Wv~~d---~~~R~~~~-~~ll~~vr~~ll~~~~l~~ 238 (571)
T KOG4441|consen 164 QHFAEVSK-TEEFLLLSLEELIGLLSSDDLNVDSEEEVFEAAMRWVKHD---FEEREEHL-PALLEAVRLPLLPPQFLVE 238 (571)
T ss_pred HHHHHHhc-cHHhhCCCHHHHHhhccccCCCcCCHHHHHHHHHHHHhcC---HhhHHHHH-HHHHHhcCccCCCHHHHHH
Confidence 99999999 9999999999999999999999999999999999999999 88899999 9999999999999999999
Q ss_pred hhccCCCCc--hhHHHHHHHHHHhhhcCccccccccccccccCCCc-ceeEEEEecC-------CCeEEEeeCCCCceEe
Q 018217 162 VLTCNDFDH--DVASKLVLEALFFKAEAPHRQRTLAAEESVTLNRR-FVERAYKYRP-------VKVVEFERPRQQCVVY 231 (359)
Q Consensus 162 ~~~~~~l~~--~~c~~li~ea~~~~~~~~~~~~~l~~~~~~p~~R~-~~~~i~v~~~-------~~~v~~ydp~~~~W~~ 231 (359)
.+...+++. ..|++++.+|++||..| .+++.++.++++| |+ ..+.|++.|+ ...+++|||.++.|..
T Consensus 239 ~v~~~~~~~~~~~c~~~l~ea~~~~~~~-~~~~~~~~~~t~~--r~~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~ 315 (571)
T KOG4441|consen 239 IVESEPLIKRDSACRDLLDEAKKYHLLP-QRRPVMQSPRTRP--RRSVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSS 315 (571)
T ss_pred HHhhhhhhccCHHHHHHHHHHHHHhhCc-ccCccccCCCccc--CcCCCCeEEEECCCCCCCcccceeEEecCCcCcEee
Confidence 999988774 68999999999999986 4556689999999 84 4477777322 4689999999999999
Q ss_pred ---ccCCCcceEEEeeCCcEEEeeeeeCCcc---cccc-------------cccccCCCCCceeeeeEE--ee----e-c
Q 018217 232 ---LDLKREECENLFPSGRVYSQAFHLGGQG---FFLS-------------AHCNMDQQSSFHCFGLFL--GM----Q-E 285 (359)
Q Consensus 232 ---m~~~R~~~~v~v~~g~iY~~~f~~gG~~---~~l~-------------~~c~~~~~~~~~~~~~~~--g~----~-~ 285 (359)
||.+|.++++++++|+||+ +||++ ..+. ...+|.+. ++.+|+.. |. + .
T Consensus 316 ~a~m~~~r~~~~~~~~~~~lYv----~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~--R~~~~v~~l~g~iYavGG~ 389 (571)
T KOG4441|consen 316 LAPMPSPRCRVGVAVLNGKLYV----VGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTK--RSDFGVAVLDGKLYAVGGF 389 (571)
T ss_pred cCCCCcccccccEEEECCEEEE----EccccCCCcccceEEEecCCCCceeccCCccCc--cccceeEEECCEEEEEecc
Confidence 8999999999999999999 66655 1222 22366644 44455332 33 2 2
Q ss_pred cCcee-eEEE-eeeeecc----------CcccccccccceeEEeeCC-------cccccccCCCCCCceeee
Q 018217 286 KGSVS-FAVD-YEFAARS----------KPTEEFVSKYKGNYTFTGG-------KAVGYRNLFAIPWTSFMA 338 (359)
Q Consensus 286 ~~~~~-~~~~-~~~~~~~----------~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~w~~~~~ 338 (359)
++... -+|| |++.... +..-.-++.....|.++|. .+++|+||.+-.|+..-.
T Consensus 390 dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~ 461 (571)
T KOG4441|consen 390 DGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAP 461 (571)
T ss_pred ccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCC
Confidence 44444 5678 8874443 2222333344555555552 279999999999987654
No 2
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=2.5e-41 Score=347.88 Aligned_cols=299 Identities=11% Similarity=0.142 Sum_probs=227.1
Q ss_pred ceeeeEeeCeEeeCCcchHHHHHHHhhccChhhHHHHHHHHccCCCCChhhHHHHHHhccccccccChHHHHHHHHHHHh
Q 018217 2 ELLNFMYSNTLSTTAAPALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLA 81 (359)
Q Consensus 2 ~lL~y~YTg~i~i~~~~nV~~lL~aA~~lqv~~l~~~C~~fL~~~~l~~~Ncl~i~~~A~~~~~~~~~~~L~~~a~~fi~ 81 (359)
.||+|+|||+ |+. +||+++|.||++||++.|+++|++||.+ +|+++||++++.+|..+ .+.+|.++|.+||+
T Consensus 81 ~ll~y~Yt~~--i~~-~nv~~ll~aA~~lqi~~l~~~C~~~l~~-~l~~~NCl~i~~~~~~~----~~~~L~~~a~~~i~ 152 (557)
T PHA02713 81 NIVQYLYNRH--ISS-MNVIDVLKCADYLLIDDLVTDCESYIKD-YTNHDTCIYMYHRLYEM----SHIPIVKYIKRMLM 152 (557)
T ss_pred HHHHHhcCCC--CCH-HHHHHHHHHHHHHCHHHHHHHHHHHHHh-hCCccchHHHHHHHHhc----cchHHHHHHHHHHH
Confidence 5899999998 676 9999999999999999999999999999 89999999999877644 67789999999999
Q ss_pred cchhhhhcccccccccCHHHHHHHhcCCC-cccCChHHHHHHHHHhhhhcCCChHHHHHHHhHhhhccccCCCCCHHHHH
Q 018217 82 SRYKDMTKFQDEVMALPLAGVEAILSSDD-LQIASEDAVYDFVLKWARAQYPRVEERREVLGSRLARFIRFPHMTCRKLK 160 (359)
Q Consensus 82 ~nf~~v~~~~~eFl~L~~~~l~~lL~sd~-L~V~sE~~Vf~avl~Wv~~d~~~~~~R~~~l~~~LL~~VRf~ll~~~~L~ 160 (359)
+||.+|.+ ++||++|+.++|.+||++|+ |+|.+|++||+|+++|++|| +++|. ++ .+||++||||+|++.++.
T Consensus 153 ~~f~~v~~-~~ef~~L~~~~l~~lL~~d~~l~v~~Ee~v~eav~~W~~~d---~~~r~-~~-~~ll~~VR~~~l~~~~~~ 226 (557)
T PHA02713 153 SNIPTLIT-TDAFKKTVFEILFDIISTNDNVYLYREGYKVTILLKWLEYN---YITEE-QL-LCILSCIDIQNLDKKSRL 226 (557)
T ss_pred HHHHHHhC-ChhhhhCCHHHHHHHhccccccCCCcHHHHHHHHHHHHhcC---HHHHH-HH-hhhHhhhhHhhcchhhhh
Confidence 99999999 99999999999999999988 79999999999999999999 66554 56 699999999999999887
Q ss_pred hhhccCCCCc--hhHHHHHHHHHHhhhcCccccccccccccccCCCcceeEEEEecC-----CCeEEEeeCCCCceEe--
Q 018217 161 KVLTCNDFDH--DVASKLVLEALFFKAEAPHRQRTLAAEESVTLNRRFVERAYKYRP-----VKVVEFERPRQQCVVY-- 231 (359)
Q Consensus 161 ~~~~~~~l~~--~~c~~li~ea~~~~~~~~~~~~~l~~~~~~p~~R~~~~~i~v~~~-----~~~v~~ydp~~~~W~~-- 231 (359)
.+..++++. +.|.+++.+++.++ ++.| |. .++++.++ ...+++|||.+++|..
T Consensus 227 -~~~~~~~i~~~~~c~~~l~~a~~~~-------------~~~~--r~--~~l~~~~g~~~~~~~~v~~yd~~~~~W~~l~ 288 (557)
T PHA02713 227 -LLYSNKTINMYPSCIQFLLDNKQNR-------------NIIP--RQ--LCLVCHDTKYNVCNPCILVYNINTMEYSVIS 288 (557)
T ss_pred -hhcchHHHHhhHHHHHHHhhhhhhc-------------ccCC--cc--eEEEEecCccccCCCCEEEEeCCCCeEEECC
Confidence 455566653 68999999886432 2334 54 34544321 2468999999999998
Q ss_pred -ccCCCcceEEEeeCCcEEEeeeeeCCcc----ccccc------------ccccCCCCCceeeeeEEe----eecc-Cce
Q 018217 232 -LDLKREECENLFPSGRVYSQAFHLGGQG----FFLSA------------HCNMDQQSSFHCFGLFLG----MQEK-GSV 289 (359)
Q Consensus 232 -m~~~R~~~~v~v~~g~iY~~~f~~gG~~----~~l~~------------~c~~~~~~~~~~~~~~~g----~~~~-~~~ 289 (359)
||.+|.++++++++|+||+ +||.. ...+. ..+|......++.+.+-| ++|. +..
T Consensus 289 ~mp~~r~~~~~a~l~~~IYv----iGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~ 364 (557)
T PHA02713 289 TIPNHIINYASAIVDNEIII----AGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTN 364 (557)
T ss_pred CCCccccceEEEEECCEEEE----EcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCC
Confidence 8889999999999999999 66642 11111 124443322222221111 1222 111
Q ss_pred -eeEEE-eeeeecc----------CcccccccccceeEEeeCC------------------------cccccccCCCCCC
Q 018217 290 -SFAVD-YEFAARS----------KPTEEFVSKYKGNYTFTGG------------------------KAVGYRNLFAIPW 333 (359)
Q Consensus 290 -~~~~~-~~~~~~~----------~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~w 333 (359)
.-+|+ |++...+ +....-++..+.+|.++|- .+++++||.+-.|
T Consensus 365 ~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W 444 (557)
T PHA02713 365 VERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIW 444 (557)
T ss_pred CCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeE
Confidence 13567 7764332 2223345667788888762 2488999999999
Q ss_pred cee
Q 018217 334 TSF 336 (359)
Q Consensus 334 ~~~ 336 (359)
+..
T Consensus 445 ~~v 447 (557)
T PHA02713 445 ETL 447 (557)
T ss_pred eec
Confidence 754
No 3
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=5.7e-40 Score=332.75 Aligned_cols=304 Identities=13% Similarity=0.140 Sum_probs=214.1
Q ss_pred ceeeeEeeCeEeeCCcchHHHHHHHhhccChhhHHHHHHHHccCCCCChhhHHHHHHhccccccccChHHHHHHHHHHHh
Q 018217 2 ELLNFMYSNTLSTTAAPALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLA 81 (359)
Q Consensus 2 ~lL~y~YTg~i~i~~~~nV~~lL~aA~~lqv~~l~~~C~~fL~~~~l~~~Ncl~i~~~A~~~~~~~~~~~L~~~a~~fi~ 81 (359)
.||+|||||+|.|+. +||+++|.||++||+++++++|++||.+ +|+++||++|+.+|+.| +|++|.++|.+||.
T Consensus 76 ~lldy~YTg~l~it~-~nV~~ll~aA~~Lqi~~v~~~C~~fL~~-~l~~~NCl~i~~~A~~y----~~~~L~~~a~~fi~ 149 (480)
T PHA02790 76 SIVIYSYTGKVYIDS-HNVVNLLRASILTSVEFIIYTCINFILR-DFRKEYCVECYMMGIEY----GLSNLLCHTKDFIA 149 (480)
T ss_pred HHHHhheeeeEEEec-ccHHHHHHHHHHhChHHHHHHHHHHHHh-hCCcchHHHHHHHHHHh----CHHHHHHHHHHHHH
Confidence 589999999999998 9999999999999999999999999999 89999999999999966 99999999999999
Q ss_pred cchhhhhccc--ccccccCHHHHHHHhcCCCcccCChHHHHHHHHHhhhhcCCChHHHHHHHhHhhhcc-ccCCCCCHHH
Q 018217 82 SRYKDMTKFQ--DEVMALPLAGVEAILSSDDLQIASEDAVYDFVLKWARAQYPRVEERREVLGSRLARF-IRFPHMTCRK 158 (359)
Q Consensus 82 ~nf~~v~~~~--~eFl~L~~~~l~~lL~sd~L~V~sE~~Vf~avl~Wv~~d~~~~~~R~~~l~~~LL~~-VRf~ll~~~~ 158 (359)
+||.+|.+ + ++|+.||. .+||++|+|+|.+|++||+||++|++|+ ..|..++ .+++++ ||+++|++.+
T Consensus 150 ~nF~~v~~-~~~~ef~~L~~---~~lLssd~L~v~~Ee~V~eav~~Wl~~~----~~~~~~l-~~~vr~~ir~~~l~~~~ 220 (480)
T PHA02790 150 KHFLELED-DIIDNFDYLSM---KLILESDELNVPDEDYVVDFVIKWYMKR----RNRLGNL-LLLIKNVIRSNYLSPRG 220 (480)
T ss_pred HhHHHHhc-ccchhhhhCCH---HHhcccccCCCccHHHHHHHHHHHHHhh----HHHHHHH-HHHHHhcCChhhCCHHH
Confidence 99999998 6 89999996 6899999999999999999999999997 4566666 677777 8999999888
Q ss_pred HHhhhccCCCCchhHHHHHHHHHHhhhcCcccc----cc----ccccc----ccc-CCCcceeEEEEec------CCCeE
Q 018217 159 LKKVLTCNDFDHDVASKLVLEALFFKAEAPHRQ----RT----LAAEE----SVT-LNRRFVERAYKYR------PVKVV 219 (359)
Q Consensus 159 L~~~~~~~~l~~~~c~~li~ea~~~~~~~~~~~----~~----l~~~~----~~p-~~R~~~~~i~v~~------~~~~v 219 (359)
+.+ +..++.++..++..+..+. +. ..... ... ......+.||+.| ..+.+
T Consensus 221 l~~-----------~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lyviGG~~~~~~~~~v 289 (480)
T PHA02790 221 INN-----------VKWILDCTKIFHCDKQPRKSYKYPFIEYPMNMDQIIDIFHMCTSTHVGEVVYLIGGWMNNEIHNNA 289 (480)
T ss_pred HHH-----------HHHHHHHHHHhhccccccccccccccccCCcccceeeccCCcceEEECCEEEEEcCCCCCCcCCeE
Confidence 753 1233444443332110000 00 00000 000 0001124677633 24689
Q ss_pred EEeeCCCCceEe---ccCCCcceEEEeeCCcEEEeeeeeCCccccc------------ccccccCCCCCceeeeeEEe--
Q 018217 220 EFERPRQQCVVY---LDLKREECENLFPSGRVYSQAFHLGGQGFFL------------SAHCNMDQQSSFHCFGLFLG-- 282 (359)
Q Consensus 220 ~~ydp~~~~W~~---m~~~R~~~~v~v~~g~iY~~~f~~gG~~~~l------------~~~c~~~~~~~~~~~~~~~g-- 282 (359)
++|||.+++|.. |+.+|..+++++++|+||+ +||.+... +...+|.+....|+-+.+-|
T Consensus 290 ~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYv----iGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~I 365 (480)
T PHA02790 290 IAVNYISNNWIPIPPMNSPRLYASGVPANNKLYV----VGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVI 365 (480)
T ss_pred EEEECCCCEEEECCCCCchhhcceEEEECCEEEE----ECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEE
Confidence 999999999999 8889999999999999999 66642111 12225544332232221111
Q ss_pred --eeccCceeeEEE-eeeeecc----------CcccccccccceeEEeeCCcccccccCCCCCCceee
Q 018217 283 --MQEKGSVSFAVD-YEFAARS----------KPTEEFVSKYKGNYTFTGGKAVGYRNLFAIPWTSFM 337 (359)
Q Consensus 283 --~~~~~~~~~~~~-~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 337 (359)
++|.....-+|+ |++...+ +...+=++....+|.++ | .++++||.+-+|+.+-
T Consensus 366 YviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G-G-~~e~ydp~~~~W~~~~ 431 (480)
T PHA02790 366 YVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG-R-NAEFYCESSNTWTLID 431 (480)
T ss_pred EEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC-C-ceEEecCCCCcEeEcC
Confidence 123222223455 6543221 11222234445566655 4 5889999999998653
No 4
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=3.1e-38 Score=324.06 Aligned_cols=241 Identities=15% Similarity=0.237 Sum_probs=200.4
Q ss_pred ceeeeEeeCeEeeCCcchHHHHHHHhhccChhhHHHHHHHHccCCCCChhhHHHHHHhccccccccChHHHHHHHHHHHh
Q 018217 2 ELLNFMYSNTLSTTAAPALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLA 81 (359)
Q Consensus 2 ~lL~y~YTg~i~i~~~~nV~~lL~aA~~lqv~~l~~~C~~fL~~~~l~~~Ncl~i~~~A~~~~~~~~~~~L~~~a~~fi~ 81 (359)
.||+|+|||++.++. +||+++|.+|++||++.|++.|++||.+ .|+++||++++.+|+.| ++.+|.++|.+||.
T Consensus 61 ~~l~y~Ytg~~~i~~-~~~~~ll~~A~~l~~~~l~~~C~~~l~~-~l~~~nc~~~~~~a~~~----~~~~L~~~~~~~i~ 134 (534)
T PHA03098 61 EVIKYIYTGKINITS-NNVKDILSIANYLIIDFLINLCINYIIK-IIDDNNCIDIYRFSFFY----GCKKLYSAAYNYIR 134 (534)
T ss_pred HHHHHhcCCceEEcH-HHHHHHHHHHHHhCcHHHHHHHHHHHHH-hCCHhHHHHHHHHHHHc----CcHHHHHHHHHHHH
Confidence 589999999999998 9999999999999999999999999999 89999999999999965 99999999999999
Q ss_pred cchhhhhcccccccccCHHHHHHHhcCCCcccCChHHHHHHHHHhhhhcCCChHHHHHHHhHhhhccccCCCCCHHHHHh
Q 018217 82 SRYKDMTKFQDEVMALPLAGVEAILSSDDLQIASEDAVYDFVLKWARAQYPRVEERREVLGSRLARFIRFPHMTCRKLKK 161 (359)
Q Consensus 82 ~nf~~v~~~~~eFl~L~~~~l~~lL~sd~L~V~sE~~Vf~avl~Wv~~d~~~~~~R~~~l~~~LL~~VRf~ll~~~~L~~ 161 (359)
+||.++.+ +++|++||.+.|..||++|+|+|.+|++||+||++|++|| .++|.+++ ++||++|||++|++++|.+
T Consensus 135 ~nf~~v~~-~~~f~~l~~~~l~~ll~~~~L~v~~E~~v~~av~~W~~~~---~~~r~~~~-~~ll~~vR~~~~~~~~l~~ 209 (534)
T PHA03098 135 NNIELIYN-DPDFIYLSKNELIKILSDDKLNVSSEDVVLEIIIKWLTSK---KNNKYKDI-CLILKVLRITFLSEEGIKK 209 (534)
T ss_pred HHHHHHhc-CchhhcCCHHHHHHHhcCCCcCcCCHHHHHHHHHHHHhcC---hhhhHhHH-HHHHhhccccccCHHHHHH
Confidence 99999999 9999999999999999999999999999999999999999 88999999 9999999999999999998
Q ss_pred hhc------cCCCC-chhHHHHHHHHHHhhhc--Ccccc---ccc----------------------cccccccCCCcc-
Q 018217 162 VLT------CNDFD-HDVASKLVLEALFFKAE--APHRQ---RTL----------------------AAEESVTLNRRF- 206 (359)
Q Consensus 162 ~~~------~~~l~-~~~c~~li~ea~~~~~~--~~~~~---~~l----------------------~~~~~~p~~R~~- 206 (359)
++. .++++ ++.|..++.++..++.. |.... ... ......|. +..
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 288 (534)
T PHA03098 210 LKRWKLRIKKKKIVFNKRCIKIIYSKKYNLNKILPRSSTFGSIIYIHITMSIFTYNYITNYSPLSEINTIIDIHY-VYCF 288 (534)
T ss_pred HHHHHhhcCCcceeccccchHHHHHHHhcccCCCcCccCCCcceEeecccchhhceeeecchhhhhcccccCccc-cccc
Confidence 775 44554 35788888887765321 10000 000 00000110 111
Q ss_pred e-----eEEEEecC-------CCeEEEeeCCCCceEe---ccCCCcceEEEeeCCcEEEeeeeeCCc
Q 018217 207 V-----ERAYKYRP-------VKVVEFERPRQQCVVY---LDLKREECENLFPSGRVYSQAFHLGGQ 258 (359)
Q Consensus 207 ~-----~~i~v~~~-------~~~v~~ydp~~~~W~~---m~~~R~~~~v~v~~g~iY~~~f~~gG~ 258 (359)
. +.||+.|+ .+.+..|||.+++|.. |+.+|.++++++++|.||+ +||.
T Consensus 289 ~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv----~GG~ 351 (534)
T PHA03098 289 GSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYV----IGGI 351 (534)
T ss_pred eEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEE----EeCC
Confidence 1 45666332 2478999999999998 7779999999999999999 5664
No 5
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=99.84 E-value=1.7e-21 Score=156.50 Aligned_cols=103 Identities=34% Similarity=0.628 Sum_probs=93.5
Q ss_pred HHHHHHhccccccccChHHHHHHHHHHHhcchhhhhcccccccccCHHHHHHHhcCCCcccCChHHHHHHHHHhhhhcCC
Q 018217 53 ALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMALPLAGVEAILSSDDLQIASEDAVYDFVLKWARAQYP 132 (359)
Q Consensus 53 cl~i~~~A~~~~~~~~~~~L~~~a~~fi~~nf~~v~~~~~eFl~L~~~~l~~lL~sd~L~V~sE~~Vf~avl~Wv~~d~~ 132 (359)
|++++.+|..| ++++|.++|.+||.+||.++.+ +++|++||.+.+..||++|+|+|.+|++||+|+++|++++
T Consensus 1 C~~i~~~A~~~----~~~~L~~~~~~~i~~nf~~v~~-~~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~~~-- 73 (103)
T PF07707_consen 1 CLSIYRLAEKY----GLEELAEACLRFIAKNFNEVSK-SDEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWLKHN-- 73 (103)
T ss_dssp HHHHHHHHHHT----T-HHHHHHHHHHHHHTHHHHTT-SHHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHHHCT--
T ss_pred ChhHHHHHHHc----ChHHHHHHHHHHHHHHHHHHcc-chhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHHHhC--
Confidence 89999999976 9999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHhHhhhccccCCCCCHHHHHhhhc
Q 018217 133 RVEERREVLGSRLARFIRFPHMTCRKLKKVLT 164 (359)
Q Consensus 133 ~~~~R~~~l~~~LL~~VRf~ll~~~~L~~~~~ 164 (359)
++.|.+++ ++||++|||++|++++|.+.++
T Consensus 74 -~~~r~~~~-~~Ll~~iR~~~l~~~~L~~~v~ 103 (103)
T PF07707_consen 74 -PENREEHL-KELLSCIRFPLLSPEELQNVVE 103 (103)
T ss_dssp -HHHHTTTH-HHHHCCCHHHCT-HHHHHHCCT
T ss_pred -HHHHHHHH-HHHHHhCCcccCCHHHHHHHHC
Confidence 88899999 8999999999999999988653
No 6
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=99.77 E-value=1e-18 Score=139.13 Aligned_cols=99 Identities=27% Similarity=0.519 Sum_probs=91.7
Q ss_pred HHHHHHhccccccccChHHHHHHHHHHHhcchhhhhcccccccccCHHHHHHHhcCCCcccCChHHHHHHHHHhhhhcCC
Q 018217 53 ALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMALPLAGVEAILSSDDLQIASEDAVYDFVLKWARAQYP 132 (359)
Q Consensus 53 cl~i~~~A~~~~~~~~~~~L~~~a~~fi~~nf~~v~~~~~eFl~L~~~~l~~lL~sd~L~V~sE~~Vf~avl~Wv~~d~~ 132 (359)
|++++.+|+.| ++++|.++|.+||.+||.++.+ +++|++||.+.+..+|++|+|+|.+|++||+|+++|++++
T Consensus 1 c~~i~~~a~~~----~~~~L~~~~~~~i~~nf~~~~~-~~~f~~L~~~~l~~iL~~d~l~v~~E~~v~~av~~W~~~~-- 73 (101)
T smart00875 1 CLGIRRFAELY----GLEELLEKALRFILKNFLEVAQ-SEEFLELSLEQLLSLLSSDDLNVPSEEEVFEAVLRWVKHD-- 73 (101)
T ss_pred CHhHHHHHHHh----ChHHHHHHHHHHHHHHHHHHhc-CcHHhcCCHHHHHHHhCcccCCCCCHHHHHHHHHHHHHCC--
Confidence 78899999755 9999999999999999999998 8999999999999999999999989999999999999999
Q ss_pred ChHHHHHHHhHhhhccccCCCCCHHHHHh
Q 018217 133 RVEERREVLGSRLARFIRFPHMTCRKLKK 161 (359)
Q Consensus 133 ~~~~R~~~l~~~LL~~VRf~ll~~~~L~~ 161 (359)
.+.|. ++ .+|+++|||++|++++|.+
T Consensus 74 -~~~~~-~~-~~ll~~ir~~~~~~~~l~~ 99 (101)
T smart00875 74 -PERRR-HL-PELLSHVRFPLLSPEYLLE 99 (101)
T ss_pred -HHHHH-HH-HHHHHhCCCCCCCHHHHHh
Confidence 65555 77 8999999999999998875
No 7
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.70 E-value=2.4e-17 Score=157.03 Aligned_cols=164 Identities=18% Similarity=0.301 Sum_probs=146.1
Q ss_pred ceeeeEeeCeEeeCCc--chHHHHHHHhhccChhhHHHHHHHHccCCCCChhhHHHHHHhccccccccChHHHHHHHHHH
Q 018217 2 ELLNFMYSNTLSTTAA--PALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQY 79 (359)
Q Consensus 2 ~lL~y~YTg~i~i~~~--~nV~~lL~aA~~lqv~~l~~~C~~fL~~~~l~~~Ncl~i~~~A~~~~~~~~~~~L~~~a~~f 79 (359)
.+|.|||||++.++.. |...+.|..|+.+++..|..+-++||.+ -|..+|.+.+++.|..| .+++|.+.|..|
T Consensus 98 ~lLrYiYtg~~~l~~~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~-iL~~~NvCmifdaA~ly----~l~~Lt~~C~mf 172 (620)
T KOG4350|consen 98 ALLRYIYTGKIDLAGVEEDILLDYLSLAHRYGFIQLETAISEYLKE-ILKNENVCMIFDAAYLY----QLTDLTDYCMMF 172 (620)
T ss_pred HHHHHHhhcceecccchHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-HHcccceeeeeeHHHHh----cchHHHHHHHHH
Confidence 4789999999998752 6789999999999999999999999999 79999999999999765 899999999999
Q ss_pred HhcchhhhhcccccccccCHHHHHHHhcCCCcccCChHHHHHHHHHhhhhcCCChHHHHHHHhHhhhccccCCCCCHHHH
Q 018217 80 LASRYKDMTKFQDEVMALPLAGVEAILSSDDLQIASEDAVYDFVLKWARAQYPRVEERREVLGSRLARFIRFPHMTCRKL 159 (359)
Q Consensus 80 i~~nf~~v~~~~~eFl~L~~~~l~~lL~sd~L~V~sE~~Vf~avl~Wv~~d~~~~~~R~~~l~~~LL~~VRf~ll~~~~L 159 (359)
+.+|..++.. ++.|..|+.+.|.++|.+|..-. -|..+|.||.+|-+++ +. +.. +.+++.||+|+|+...|
T Consensus 173 mDrnA~~lL~-~~sFn~LSk~sL~e~l~RDsFfA-pE~~IFlAv~~W~~~N---sk---e~~-k~~~~~VRLPLm~lteL 243 (620)
T KOG4350|consen 173 MDRNADQLLE-DPSFNRLSKDSLKELLARDSFFA-PELKIFLAVRSWHQNN---SK---EAS-KVLLELVRLPLMTLTEL 243 (620)
T ss_pred HhcCHHhhhc-CcchhhhhHHHHHHHHhhhcccc-hHHHHHHHHHHHHhcC---ch---hhH-HHHHHHHhhhhccHHHH
Confidence 9999999999 99999999999999999998865 6999999999999998 42 233 78999999999999999
Q ss_pred HhhhccCCCCchhHHHHHHHHHH
Q 018217 160 KKVLTCNDFDHDVASKLVLEALF 182 (359)
Q Consensus 160 ~~~~~~~~l~~~~c~~li~ea~~ 182 (359)
.+++.+.+++. .+.|++|..
T Consensus 244 LnvVRPsGlls---pD~iLDAI~ 263 (620)
T KOG4350|consen 244 LNVVRPSGLLS---PDTILDAIE 263 (620)
T ss_pred HhccCcccCcC---HHHHHHHHH
Confidence 99999998886 334455544
No 8
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.60 E-value=2.3e-15 Score=146.56 Aligned_cols=232 Identities=23% Similarity=0.361 Sum_probs=170.9
Q ss_pred ceeeeEeeCeEeeCCcchHHHHHHHhhccChhhHHHHHHHHccCCCCChhhHHHHHHh-ccccccccChHHHHHHHHHHH
Q 018217 2 ELLNFMYSNTLSTTAAPALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLEL-PSSVLMGEAVQPLTDAARQYL 80 (359)
Q Consensus 2 ~lL~y~YTg~i~i~~~~nV~~lL~aA~~lqv~~l~~~C~~fL~~~~l~~~Ncl~i~~~-A~~~~~~~~~~~L~~~a~~fi 80 (359)
.+|+|||+..+.+.. +||..+|.+|+++.++.+.+.|.+||+. .+.+.|.+..+.- |..+ .-++|.+.|.+-|
T Consensus 173 ~~L~flYsdev~~~~-dtvi~tl~~AkKY~VpaLer~CVkflr~-~l~~~naf~~L~q~A~lf----~ep~Li~~c~e~i 246 (521)
T KOG2075|consen 173 AFLRFLYSDEVKLAA-DTVITTLYAAKKYLVPALERQCVKFLRK-NLMADNAFLELFQRAKLF----DEPSLISICLEVI 246 (521)
T ss_pred HHHHHHhcchhhhhH-HHHHHHHHHHHHhhhHHHHHHHHHHHHH-hcCChHHHHHHHHHHHhh----cCHHHHHHHHHHh
Confidence 468999999999986 9999999999999999999999999999 8988887766654 6544 6789999999999
Q ss_pred hcchhhhhcccccccccC--HHHHHHHhcCCCcccCChHHHHHHHHHhhhhcCC------ChHHHHHHHhHhhhccccCC
Q 018217 81 ASRYKDMTKFQDEVMALP--LAGVEAILSSDDLQIASEDAVYDFVLKWARAQYP------RVEERREVLGSRLARFIRFP 152 (359)
Q Consensus 81 ~~nf~~v~~~~~eFl~L~--~~~l~~lL~sd~L~V~sE~~Vf~avl~Wv~~d~~------~~~~R~~~l~~~LL~~VRf~ 152 (359)
..+|.+... .|.|.... .+.++++|.++.|.+ +|..+|+|+++|+..... +.+.+++.+ .+.+..||||
T Consensus 247 d~~~~~al~-~EGf~did~~~dt~~evl~r~~l~~-~e~~lfeA~lkw~~~e~~rs~~~~~~~~~~~vl-~~~l~lirfp 323 (521)
T KOG2075|consen 247 DKSFEDALT-PEGFCDIDSTRDTYEEVLRRDTLEA-REFRLFEAALKWAEAECQRSGGPVNGQNKRKVL-GRALSLIRFP 323 (521)
T ss_pred hhHHHhhhC-ccceeehhhHHHHHHHHHhhcccch-hHHHHHHHHHhhccCcchhhcCCCCccchhhhh-hheeeeeccc
Confidence 999999998 99999988 999999999999998 599999999999987642 245567888 8999999999
Q ss_pred CCCHHHHHhhhccCCCCchhHHHHHHHHHHhhhcCccccccccccccccCCCcceeEEEEecCCCeEEEeeC-CCCceEe
Q 018217 153 HMTCRKLKKVLTCNDFDHDVASKLVLEALFFKAEAPHRQRTLAAEESVTLNRRFVERAYKYRPVKVVEFERP-RQQCVVY 231 (359)
Q Consensus 153 ll~~~~L~~~~~~~~l~~~~c~~li~ea~~~~~~~~~~~~~l~~~~~~p~~R~~~~~i~v~~~~~~v~~ydp-~~~~W~~ 231 (359)
+|..+.+..-+++.++..+ | +.+.-.+-+.+.| .|.+... .+| |.. +..+.....++|+- -++.|.+
T Consensus 324 ~m~~Eefa~~~e~sgIl~d-~-e~~~~F~~~t~~P---~P~l~f~-~~~--ra~----ls~~~~~~~rfqr~~~R~q~~~ 391 (521)
T KOG2075|consen 324 FMNIEEFARGVEQSGILTD-R-EPLKLFLYFTAAP---KPALDFV-SRP--RAG----LSHKKLVRARFQRSETRQQWRY 391 (521)
T ss_pred ccchhhhccCccccCCccc-c-chHhhhhhhccCC---Ccccccc-Ccc--ccc----ccccccchhhhhcchhhhhhcc
Confidence 9999998877776666532 1 1111111222222 1222211 122 321 11222334455653 3446888
Q ss_pred c-cCCCcceEEEeeCCcEEEeeeeeCC
Q 018217 232 L-DLKREECENLFPSGRVYSQAFHLGG 257 (359)
Q Consensus 232 m-~~~R~~~~v~v~~g~iY~~~f~~gG 257 (359)
. ...|..|.+ |.+|++.||++-|
T Consensus 392 ~g~~D~i~F~v---d~ri~IagfGlyg 415 (521)
T KOG2075|consen 392 RGTSDRITFQV---DRRIFIAGFGLYG 415 (521)
T ss_pred ccccccceeee---eeeEEEEeccccc
Confidence 3 233456654 8889998986555
No 9
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.20 E-value=2.2e-11 Score=116.60 Aligned_cols=117 Identities=15% Similarity=0.342 Sum_probs=110.5
Q ss_pred eeeEeeCeEeeCCcchHHHHHHHhhccChhhHHHHHHHHccCCCCChhhHHHHHHhccccccccChHHHHHHHHHHHhcc
Q 018217 4 LNFMYSNTLSTTAAPALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASR 83 (359)
Q Consensus 4 L~y~YTg~i~i~~~~nV~~lL~aA~~lqv~~l~~~C~~fL~~~~l~~~Ncl~i~~~A~~~~~~~~~~~L~~~a~~fi~~n 83 (359)
+.-+|..+|.|+. +.|..+|++|.+||++++.+.|.+-|.+ .|+|+|.++++..|..| ++..+.+.|.+++..|
T Consensus 128 ~gsLY~dEveI~l-~dv~gvlAaA~~lqldgl~qrC~evMie-~lspkta~~yYea~ckY----gle~vk~kc~ewl~~n 201 (488)
T KOG4682|consen 128 FGSLYRDEVEIKL-SDVVGVLAAACLLQLDGLIQRCGEVMIE-TLSPKTACGYYEAACKY----GLESVKKKCLEWLLNN 201 (488)
T ss_pred HhhhhhhheeccH-HHHHHHHHHHHHHHHhhHHHHHHHHHHH-hcChhhhhHhhhhhhhh----hhHHHHHHHHHHHHHh
Confidence 3457999999997 9999999999999999999999999999 89999999999999977 9999999999999999
Q ss_pred hhhhhcccccccccCHHHHHHHhcCCCcccCC-hHHHHHHHHHhh
Q 018217 84 YKDMTKFQDEVMALPLAGVEAILSSDDLQIAS-EDAVYDFVLKWA 127 (359)
Q Consensus 84 f~~v~~~~~eFl~L~~~~l~~lL~sd~L~V~s-E~~Vf~avl~Wv 127 (359)
+..+.. ..-+.++|.+.+.++|.|++|-|-+ |.++|..+..|+
T Consensus 202 l~~i~~-~q~l~ei~~~Lm~~ll~SpnLfvmq~EfdLyttlk~Wm 245 (488)
T KOG4682|consen 202 LMTIQN-VQLLKEISINLMKQLLGSPNLFVMQVEFDLYTTLKKWM 245 (488)
T ss_pred hHhhhh-HHHHHhcCHHHHHHHhCCCCeEEEEeeehHHHHHHHHH
Confidence 999987 7788899999999999999998866 999999999997
No 10
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.90 E-value=4.9e-08 Score=101.36 Aligned_cols=295 Identities=15% Similarity=0.168 Sum_probs=154.9
Q ss_pred cchHHHHHHHhhccChhhHHHHHHHHccCC-----------CCChhhHHHHHHhccccccccChHHHHHHHHHHHhcch-
Q 018217 17 APALLDVLMAADKFEVASCMRYCSRLLRNM-----------PMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRY- 84 (359)
Q Consensus 17 ~~nV~~lL~aA~~lqv~~l~~~C~~fL~~~-----------~l~~~Ncl~i~~~A~~~~~~~~~~~L~~~a~~fi~~nf- 84 (359)
|+|...+...|+.+...+|.+...+|+... .|+.+--.+++.-=+. -...-+++.+++.+++..++
T Consensus 136 ~~Nclgi~~~a~~~~~~~L~~~a~~~i~~~F~~v~~~eefl~L~~~~l~~ll~~d~l--~v~~E~~vf~a~~~Wv~~d~~ 213 (571)
T KOG4441|consen 136 PSNCLGIRRFAELHSCTELLEVADEYILQHFAEVSKTEEFLLLSLEELIGLLSSDDL--NVDSEEEVFEAAMRWVKHDFE 213 (571)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccHHhhCCCHHHHHhhccccCC--CcCCHHHHHHHHHHHHhcCHh
Confidence 389999999999999999999888777661 2222333333321110 01123457888888876543
Q ss_pred ------hhhhcccccccccCHHHHHHHhcCCCccc---CChHHHHHHHHHhhhhcCCChHHHHHHHhHhhhccccCCCCC
Q 018217 85 ------KDMTKFQDEVMALPLAGVEAILSSDDLQI---ASEDAVYDFVLKWARAQYPRVEERREVLGSRLARFIRFPHMT 155 (359)
Q Consensus 85 ------~~v~~~~~eFl~L~~~~l~~lL~sd~L~V---~sE~~Vf~avl~Wv~~d~~~~~~R~~~l~~~LL~~VRf~ll~ 155 (359)
.++.+ .--|--|++..+...+..+.+.- ..-..+.+|. +|-... .+|.. + ..+...
T Consensus 214 ~R~~~~~~ll~-~vr~~ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea~-~~~~~~----~~~~~------~---~~~~t~ 278 (571)
T KOG4441|consen 214 EREEHLPALLE-AVRLPLLPPQFLVEIVESEPLIKRDSACRDLLDEAK-KYHLLP----QRRPV------M---QSPRTR 278 (571)
T ss_pred hHHHHHHHHHH-hcCccCCCHHHHHHHHhhhhhhccCHHHHHHHHHHH-HHhhCc----ccCcc------c---cCCCcc
Confidence 44554 55566677777777777665421 1223344443 332221 11100 0 011111
Q ss_pred HHH-HHh-hhccCCCCchhHHHHHHHHHHhhhcCccccccccccccccCCCcce------eEEEEec-------CCCeEE
Q 018217 156 CRK-LKK-VLTCNDFDHDVASKLVLEALFFKAEAPHRQRTLAAEESVTLNRRFV------ERAYKYR-------PVKVVE 220 (359)
Q Consensus 156 ~~~-L~~-~~~~~~l~~~~c~~li~ea~~~~~~~~~~~~~l~~~~~~p~~R~~~------~~i~v~~-------~~~~v~ 220 (359)
+.. ..+ ++.-.+..+ ..+.+.....|. |...+-..-++...+ |... +.||+.| .+++++
T Consensus 279 ~r~~~~~~l~~vGG~~~--~~~~~~~ve~yd--~~~~~w~~~a~m~~~--r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve 352 (571)
T KOG4441|consen 279 PRRSVSGKLVAVGGYNR--QGQSLRSVECYD--PKTNEWSSLAPMPSP--RCRVGVAVLNGKLYVVGGYDSGSDRLSSVE 352 (571)
T ss_pred cCcCCCCeEEEECCCCC--CCcccceeEEec--CCcCcEeecCCCCcc--cccccEEEECCEEEEEccccCCCcccceEE
Confidence 110 000 000000000 000011011111 111111111111222 3322 4577722 246899
Q ss_pred EeeCCCCceEe---ccCCCcceEEEeeCCcEEEeeeeeCCccccccccc------------ccCCCCCceeeeeEE--ee
Q 018217 221 FERPRQQCVVY---LDLKREECENLFPSGRVYSQAFHLGGQGFFLSAHC------------NMDQQSSFHCFGLFL--GM 283 (359)
Q Consensus 221 ~ydp~~~~W~~---m~~~R~~~~v~v~~g~iY~~~f~~gG~~~~l~~~c------------~~~~~~~~~~~~~~~--g~ 283 (359)
+|||.+++|.. |+.+|.++++++++|.||++|+.. |...+.+..| ||..+ +.++|... |.
T Consensus 353 ~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~d-g~~~l~svE~YDp~~~~W~~va~m~~~--r~~~gv~~~~g~ 429 (571)
T KOG4441|consen 353 RYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFD-GEKSLNSVECYDPVTNKWTPVAPMLTR--RSGHGVAVLGGK 429 (571)
T ss_pred EecCCCCceeccCCccCccccceeEEECCEEEEEeccc-cccccccEEEecCCCCcccccCCCCcc--eeeeEEEEECCE
Confidence 99999999999 889999999999999999943222 3334343444 56543 44555443 22
Q ss_pred ----ec-cCce-e-eEEE-eeeeecc----------CcccccccccceeEEeeC------CcccccccCCCCCCceee
Q 018217 284 ----QE-KGSV-S-FAVD-YEFAARS----------KPTEEFVSKYKGNYTFTG------GKAVGYRNLFAIPWTSFM 337 (359)
Q Consensus 284 ----~~-~~~~-~-~~~~-~~~~~~~----------~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~w~~~~ 337 (359)
+| +++. . -+|+ |++...+ |....=++-...+|+++| ..+|+++||.+=+|+..-
T Consensus 430 iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~ 507 (571)
T KOG4441|consen 430 LYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVA 507 (571)
T ss_pred EEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcc
Confidence 22 2222 2 5677 8876655 323334455677888887 225999999999999884
No 11
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.81 E-value=8e-09 Score=90.84 Aligned_cols=103 Identities=14% Similarity=0.324 Sum_probs=93.5
Q ss_pred eeeeEeeCeEeeCCc-chHHHHHHHhhccChhhHHHHHHHHccCCCCChhhHHHHHHhccccccccChHHHHHHHHHHHh
Q 018217 3 LLNFMYSNTLSTTAA-PALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLA 81 (359)
Q Consensus 3 lL~y~YTg~i~i~~~-~nV~~lL~aA~~lqv~~l~~~C~~fL~~~~l~~~Ncl~i~~~A~~~~~~~~~~~L~~~a~~fi~ 81 (359)
.|++|||.+|++... +-+.++...|+.||+.-+++.|.+-+.. -++++||+.++.+|+.. +...|...|-..|+
T Consensus 121 ~iRWIYTDEidfk~dD~~L~el~e~An~FqLe~Lke~C~k~l~a-~l~V~NCIk~Ye~AEe~----n~~qL~n~~~eiIA 195 (280)
T KOG4591|consen 121 AIRWIYTDEIDFKEDDEFLLELCELANRFQLELLKERCEKGLGA-LLHVDNCIKFYEFAEEL----NARQLMNVAAEIIA 195 (280)
T ss_pred hheeeeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HhhHhhHHHHHHHHHHh----hHHHHHHHHHHHHH
Confidence 578999999999862 3568999999999999999999999999 79999999999999965 88999999999999
Q ss_pred cchhhhhcccccccccCHHHHHHHhcCCCcc
Q 018217 82 SRYKDMTKFQDEVMALPLAGVEAILSSDDLQ 112 (359)
Q Consensus 82 ~nf~~v~~~~~eFl~L~~~~l~~lL~sd~L~ 112 (359)
.+..++-+ ++|-+++...|.+++.+..-+
T Consensus 196 ~~W~dL~~--a~FaqMs~aLLYklId~kTe~ 224 (280)
T KOG4591|consen 196 GAWDDLGK--ADFAQMSAALLYKLIDGKTEN 224 (280)
T ss_pred hhccccCh--HHHHhccHHHHHHHHcCCCcc
Confidence 99999875 899999999999999987533
No 12
>PHA02713 hypothetical protein; Provisional
Probab=98.60 E-value=2.9e-07 Score=95.51 Aligned_cols=131 Identities=8% Similarity=-0.018 Sum_probs=81.7
Q ss_pred eEEEEecC------CCeEEEeeCCCCceEe---ccCCCcceEEEeeCCcEEEeeeeeCCccc------------------
Q 018217 208 ERAYKYRP------VKVVEFERPRQQCVVY---LDLKREECENLFPSGRVYSQAFHLGGQGF------------------ 260 (359)
Q Consensus 208 ~~i~v~~~------~~~v~~ydp~~~~W~~---m~~~R~~~~v~v~~g~iY~~~f~~gG~~~------------------ 260 (359)
+.||+.|+ .++|++|||.+++|.. ||.+|.++++++++|+||+ +||...
T Consensus 352 g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYv----iGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 352 DTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYI----IGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred CEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEE----EeCCCccccccccccccccccccc
Confidence 57888333 4689999999999999 8899999999999999999 555321
Q ss_pred ---cccccc------------ccCCCCCceeeeeEEe----eecc-C-cee-eEEE-eeeee-cc----------Ccccc
Q 018217 261 ---FLSAHC------------NMDQQSSFHCFGLFLG----MQEK-G-SVS-FAVD-YEFAA-RS----------KPTEE 306 (359)
Q Consensus 261 ---~l~~~c------------~~~~~~~~~~~~~~~g----~~~~-~-~~~-~~~~-~~~~~-~~----------~~~~~ 306 (359)
..+..| +|..+...++...+-| +++. + ... -+|+ |++.. .+ +...+
T Consensus 428 ~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~ 507 (557)
T PHA02713 428 THSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALH 507 (557)
T ss_pred ccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccce
Confidence 111122 4433322232221111 1221 1 111 2456 87755 22 33455
Q ss_pred cccccceeEEeeCC---cccccccCCCCCCceeeeCCCc
Q 018217 307 FVSKYKGNYTFTGG---KAVGYRNLFAIPWTSFMADDSL 342 (359)
Q Consensus 307 ~~~~~~~~~~~~~~---~~~~~~~~~~~~w~~~~~~~~~ 342 (359)
-+.....+|.++|- .+++|+|+-+-+|+.+-...|+
T Consensus 508 ~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~~~ 546 (557)
T PHA02713 508 TILHDNTIMMLHCYESYMLQDTFNVYTYEWNHICHQHSN 546 (557)
T ss_pred eEEECCEEEEEeeecceeehhhcCcccccccchhhhcCC
Confidence 56666677777651 2699999999999977775443
No 13
>PHA03098 kelch-like protein; Provisional
Probab=98.39 E-value=3.8e-06 Score=86.63 Aligned_cols=89 Identities=10% Similarity=0.075 Sum_probs=60.2
Q ss_pred eCCcchHHHHHHHhhccChhhHHHHHHHHccCCC------------CChhhHHHHHHhccccccccChHHHHHHHHHHHh
Q 018217 14 TTAAPALLDVLMAADKFEVASCMRYCSRLLRNMP------------MTPESALLYLELPSSVLMGEAVQPLTDAARQYLA 81 (359)
Q Consensus 14 i~~~~nV~~lL~aA~~lqv~~l~~~C~~fL~~~~------------l~~~Ncl~i~~~A~~~~~~~~~~~L~~~a~~fi~ 81 (359)
++. +|+.+++..|+.+..+.|.+.|.+|+.+ + |+.+-...++.--. . .-..-.++.+++.+++.
T Consensus 105 l~~-~nc~~~~~~a~~~~~~~L~~~~~~~i~~-nf~~v~~~~~f~~l~~~~l~~ll~~~~-L-~v~~E~~v~~av~~W~~ 180 (534)
T PHA03098 105 IDD-NNCIDIYRFSFFYGCKKLYSAAYNYIRN-NIELIYNDPDFIYLSKNELIKILSDDK-L-NVSSEDVVLEIIIKWLT 180 (534)
T ss_pred CCH-hHHHHHHHHHHHcCcHHHHHHHHHHHHH-HHHHHhcCchhhcCCHHHHHHHhcCCC-c-CcCCHHHHHHHHHHHHh
Confidence 555 8999999999999999999999999876 3 33333333332111 0 01134567888888884
Q ss_pred c-------chhhhhcccccccccCHHHHHHHhc
Q 018217 82 S-------RYKDMTKFQDEVMALPLAGVEAILS 107 (359)
Q Consensus 82 ~-------nf~~v~~~~~eFl~L~~~~l~~lL~ 107 (359)
. ++.++.+ .--|..++.+.+..+..
T Consensus 181 ~~~~~r~~~~~~ll~-~vR~~~~~~~~l~~~~~ 212 (534)
T PHA03098 181 SKKNNKYKDICLILK-VLRITFLSEEGIKKLKR 212 (534)
T ss_pred cChhhhHhHHHHHHh-hccccccCHHHHHHHHH
Confidence 4 3455665 56677788888877764
No 14
>PHA02790 Kelch-like protein; Provisional
Probab=98.16 E-value=7.8e-06 Score=83.45 Aligned_cols=119 Identities=13% Similarity=0.060 Sum_probs=71.8
Q ss_pred eEEEEecC---CCeEEEeeCCCCceEe---ccCCCcceEEEeeCCcEEEeeeeeCCcccc-ccccc------------cc
Q 018217 208 ERAYKYRP---VKVVEFERPRQQCVVY---LDLKREECENLFPSGRVYSQAFHLGGQGFF-LSAHC------------NM 268 (359)
Q Consensus 208 ~~i~v~~~---~~~v~~ydp~~~~W~~---m~~~R~~~~v~v~~g~iY~~~f~~gG~~~~-l~~~c------------~~ 268 (359)
+.||+.|+ .+++++|||.+++|.. ||.+|.++++++++|+||+ +||.... .+..| +|
T Consensus 319 ~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYv----iGG~~~~~~~ve~ydp~~~~W~~~~~m 394 (480)
T PHA02790 319 NKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYV----IGGHSETDTTTEYLLPNHDQWQFGPST 394 (480)
T ss_pred CEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEE----ecCcCCCCccEEEEeCCCCEEEeCCCC
Confidence 57777443 3679999999999999 8889999999999999999 6664211 11112 34
Q ss_pred CCCCCceeeeeEEee---eccCceeeEEE-eeeeecc----------CcccccccccceeEEeeCC------cccccccC
Q 018217 269 DQQSSFHCFGLFLGM---QEKGSVSFAVD-YEFAARS----------KPTEEFVSKYKGNYTFTGG------KAVGYRNL 328 (359)
Q Consensus 269 ~~~~~~~~~~~~~g~---~~~~~~~~~~~-~~~~~~~----------~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 328 (359)
..+...|+-+.+-|. -| |. ++ |++...+ +....-+.....+|.++|- .+++++||
T Consensus 395 ~~~r~~~~~~~~~~~IYv~G-G~----~e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~ 469 (480)
T PHA02790 395 YYPHYKSCALVFGRRLFLVG-RN----AEFYCESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNN 469 (480)
T ss_pred CCccccceEEEECCEEEEEC-Cc----eEEecCCCCcEeEcCCCCCCccccEEEEECCEEEEECCcCCCcccceEEEEEC
Confidence 333223322211110 01 11 23 4432211 2233445556667777762 36899999
Q ss_pred CCCCCce
Q 018217 329 FAIPWTS 335 (359)
Q Consensus 329 ~~~~w~~ 335 (359)
.+-.|+.
T Consensus 470 ~~~~W~~ 476 (480)
T PHA02790 470 RTYSWNI 476 (480)
T ss_pred CCCeEEe
Confidence 9999975
No 15
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=97.57 E-value=2.1e-05 Score=63.26 Aligned_cols=43 Identities=21% Similarity=0.543 Sum_probs=40.4
Q ss_pred ceeeeEeeCeEeeC-CcchHHHHHHHhhccChhhHHHHHHHHccC
Q 018217 2 ELLNFMYSNTLSTT-AAPALLDVLMAADKFEVASCMRYCSRLLRN 45 (359)
Q Consensus 2 ~lL~y~YTg~i~i~-~~~nV~~lL~aA~~lqv~~l~~~C~~fL~~ 45 (359)
.+|+|+|+|++.++ . +++.+++.+|++|+++.|++.|+++|.+
T Consensus 66 ~~l~~~Y~~~~~~~~~-~~~~~ll~lA~~~~~~~L~~~~~~~l~~ 109 (111)
T PF00651_consen 66 AFLEYMYTGEIEINSD-ENVEELLELADKLQIPELKKACEKFLQE 109 (111)
T ss_dssp HHHHHHHHSEEEEE-T-TTHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred cccccccCCcccCCHH-HHHHHHHHHHHHhCcHHHHHHHHHHHHh
Confidence 47899999999998 7 9999999999999999999999999976
No 16
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=97.48 E-value=5e-05 Score=79.28 Aligned_cols=82 Identities=12% Similarity=0.280 Sum_probs=71.5
Q ss_pred eeeeEe-eCeEeeCC----cchHHHHHHHhhccChhhHHHHHHHHccCCCCChhhHHHHHHhccccccccChHHHHHHHH
Q 018217 3 LLNFMY-SNTLSTTA----APALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAAR 77 (359)
Q Consensus 3 lL~y~Y-Tg~i~i~~----~~nV~~lL~aA~~lqv~~l~~~C~~fL~~~~l~~~Ncl~i~~~A~~~~~~~~~~~L~~~a~ 77 (359)
+|+|+| +.+..+-. .+-+.+||..||.|.+.+|+..|+.-|.+ .|+.-||-.++.||-.| ++++|...|.
T Consensus 766 vLdylYs~d~~~~~k~~~~~dF~~~il~iaDqlli~~Lk~Ice~~ll~-kl~lk~~~~llefaamY----~ak~L~~~C~ 840 (1267)
T KOG0783|consen 766 VLDYLYSDDKVELFKDLKESDFMFEILSIADQLLILELKSICEQSLLR-KLNLKTLPTLLEFAAMY----HAKELYSRCI 840 (1267)
T ss_pred HHHHHHccchHHHHhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHh-HhcccchHHHHHHHHHh----hHHHHHHHHH
Confidence 689999 44443321 15689999999999999999999999999 89999999999999876 9999999999
Q ss_pred HHHhcchhhhhc
Q 018217 78 QYLASRYKDMTK 89 (359)
Q Consensus 78 ~fi~~nf~~v~~ 89 (359)
+||+.|...+..
T Consensus 841 dfic~N~~~~Le 852 (1267)
T KOG0783|consen 841 DFICHNIEFFLE 852 (1267)
T ss_pred HHHHHhHHHHHH
Confidence 999999988775
No 17
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=97.42 E-value=0.0006 Score=66.33 Aligned_cols=38 Identities=11% Similarity=0.045 Sum_probs=33.8
Q ss_pred CeEEEeeCCCCceEe---ccC-CCcceEEEeeCCcEEEeeeeeCCc
Q 018217 217 KVVEFERPRQQCVVY---LDL-KREECENLFPSGRVYSQAFHLGGQ 258 (359)
Q Consensus 217 ~~v~~ydp~~~~W~~---m~~-~R~~~~v~v~~g~iY~~~f~~gG~ 258 (359)
+.+++|||.+++|.. ||. +|.++++++++|+||+ +||.
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv----~GG~ 209 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLL----INGE 209 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEE----Eeee
Confidence 679999999999999 775 6889999999999999 7775
No 18
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=97.36 E-value=9.4e-05 Score=56.07 Aligned_cols=38 Identities=24% Similarity=0.527 Sum_probs=35.7
Q ss_pred ceeeeEeeCeEeeCCcchHHHHHHHhhccChhhHHHHHH
Q 018217 2 ELLNFMYSNTLSTTAAPALLDVLMAADKFEVASCMRYCS 40 (359)
Q Consensus 2 ~lL~y~YTg~i~i~~~~nV~~lL~aA~~lqv~~l~~~C~ 40 (359)
.+|+|+|+|++.++. +++.+++.+|++|+++.+++.|+
T Consensus 53 ~~l~~ly~~~~~~~~-~~~~~l~~~a~~~~~~~l~~~c~ 90 (90)
T smart00225 53 ALLEFLYTGKLDLPE-ENVEELLELADYLQIPGLVELCE 90 (90)
T ss_pred HHHHeecCceeecCH-HHHHHHHHHHHHHCcHHHHhhhC
Confidence 478999999999997 89999999999999999999985
No 19
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=97.08 E-value=0.0021 Score=61.92 Aligned_cols=47 Identities=15% Similarity=0.055 Sum_probs=38.1
Q ss_pred eEEEEec------CCCeEEEeeCCCCceEe---cc-CCCcceEEEeeCCcEEEeeeeeCCc
Q 018217 208 ERAYKYR------PVKVVEFERPRQQCVVY---LD-LKREECENLFPSGRVYSQAFHLGGQ 258 (359)
Q Consensus 208 ~~i~v~~------~~~~v~~ydp~~~~W~~---m~-~~R~~~~v~v~~g~iY~~~f~~gG~ 258 (359)
+.||+.+ ..+.+++|||.+++|.. || .+|..+++++++++||+ +||.
T Consensus 124 ~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv----~GG~ 180 (323)
T TIGR03548 124 GTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYV----FGGG 180 (323)
T ss_pred CEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEE----EcCC
Confidence 5677733 24689999999999998 55 36888899999999999 7775
No 20
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=97.07 E-value=0.0041 Score=61.45 Aligned_cols=38 Identities=11% Similarity=0.108 Sum_probs=33.1
Q ss_pred CeEEEeeCCCCceEe---ccC-CCcceEEEeeCCcEEEeeeeeCCc
Q 018217 217 KVVEFERPRQQCVVY---LDL-KREECENLFPSGRVYSQAFHLGGQ 258 (359)
Q Consensus 217 ~~v~~ydp~~~~W~~---m~~-~R~~~~v~v~~g~iY~~~f~~gG~ 258 (359)
+.+++|||.+++|.. ||. +|.++++++++++||+ +||.
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv----~GG~ 230 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWL----INGE 230 (376)
T ss_pred ceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEE----Eeee
Confidence 579999999999998 775 6888999999999999 6664
No 21
>smart00612 Kelch Kelch domain.
Probab=97.05 E-value=0.00091 Score=44.73 Aligned_cols=31 Identities=19% Similarity=0.132 Sum_probs=27.6
Q ss_pred CCeEEEeeCCCCceEe---ccCCCcceEEEeeCC
Q 018217 216 VKVVEFERPRQQCVVY---LDLKREECENLFPSG 246 (359)
Q Consensus 216 ~~~v~~ydp~~~~W~~---m~~~R~~~~v~v~~g 246 (359)
.+.+++|||.+++|.. |+.+|..+++++++|
T Consensus 14 ~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 14 LKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred eeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 4689999999999998 888999999988875
No 22
>PLN02153 epithiospecifier protein
Probab=96.83 E-value=0.0044 Score=60.27 Aligned_cols=47 Identities=15% Similarity=0.117 Sum_probs=38.8
Q ss_pred eEEEEecC------CCeEEEeeCCCCceEe---c-----cCCCcceEEEeeCCcEEEeeeeeCCc
Q 018217 208 ERAYKYRP------VKVVEFERPRQQCVVY---L-----DLKREECENLFPSGRVYSQAFHLGGQ 258 (359)
Q Consensus 208 ~~i~v~~~------~~~v~~ydp~~~~W~~---m-----~~~R~~~~v~v~~g~iY~~~f~~gG~ 258 (359)
+.||+.++ .+.+++|||.+++|.. | |.+|..|++++.+++||+ +||.
T Consensus 86 ~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv----~GG~ 146 (341)
T PLN02153 86 TKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYV----FGGV 146 (341)
T ss_pred CEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEE----ECCc
Confidence 56777332 4689999999999997 4 678999999999999999 7775
No 23
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=96.81 E-value=0.0046 Score=59.60 Aligned_cols=112 Identities=16% Similarity=0.068 Sum_probs=64.6
Q ss_pred eEEEEecC------CCeEEEeeCCCCce----Ee---ccCCCcceEEEeeCCcEEEeeeeeCCcccccccccccCCCCCc
Q 018217 208 ERAYKYRP------VKVVEFERPRQQCV----VY---LDLKREECENLFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSF 274 (359)
Q Consensus 208 ~~i~v~~~------~~~v~~ydp~~~~W----~~---m~~~R~~~~v~v~~g~iY~~~f~~gG~~~~l~~~c~~~~~~~~ 274 (359)
+.||+.++ .+.+++||+.+++| .. ||.+|.++++++++++||+ +||... ... .+..
T Consensus 73 ~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv----~GG~~~----~~~---~~~v 141 (323)
T TIGR03548 73 NGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYV----GGGNRN----GKP---SNKS 141 (323)
T ss_pred CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEE----EeCcCC----Ccc---CceE
Confidence 46666322 46899999999998 44 7888999999999999999 677410 000 0122
Q ss_pred eeeeeEEeeeccCceeeEEEeeeeeccCcccccccccceeEEeeCCc-----ccccccCCCCCCceee
Q 018217 275 HCFGLFLGMQEKGSVSFAVDYEFAARSKPTEEFVSKYKGNYTFTGGK-----AVGYRNLFAIPWTSFM 337 (359)
Q Consensus 275 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~w~~~~ 337 (359)
++|..-..-..... +.+...|.. ..-+...++.|.|+|.. .+.++||.+-.|+..-
T Consensus 142 ~~yd~~~~~W~~~~-----~~p~~~r~~--~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~ 202 (323)
T TIGR03548 142 YLFNLETQEWFELP-----DFPGEPRVQ--PVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVA 202 (323)
T ss_pred EEEcCCCCCeeECC-----CCCCCCCCc--ceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECC
Confidence 33322211111100 011112221 12234456788887642 3568899999998764
No 24
>PLN02193 nitrile-specifier protein
Probab=96.50 E-value=0.017 Score=58.97 Aligned_cols=47 Identities=13% Similarity=0.029 Sum_probs=38.9
Q ss_pred eEEEEecC------CCeEEEeeCCCCceEe---c---cCCCcceEEEeeCCcEEEeeeeeCCc
Q 018217 208 ERAYKYRP------VKVVEFERPRQQCVVY---L---DLKREECENLFPSGRVYSQAFHLGGQ 258 (359)
Q Consensus 208 ~~i~v~~~------~~~v~~ydp~~~~W~~---m---~~~R~~~~v~v~~g~iY~~~f~~gG~ 258 (359)
+.||+.++ .+.+++|||.+++|.. | |.+|..|++++.+++||+ +||.
T Consensus 229 ~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv----~GG~ 287 (470)
T PLN02193 229 STLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYV----FGGV 287 (470)
T ss_pred CEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEE----ECCC
Confidence 46777332 4689999999999998 4 678999999999999999 6774
No 25
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=96.48 E-value=0.004 Score=60.57 Aligned_cols=38 Identities=13% Similarity=-0.055 Sum_probs=34.4
Q ss_pred eEEEeeCCCCceEe---ccCCCcceEEEeeCCcEEEeeeeeCCcc
Q 018217 218 VVEFERPRQQCVVY---LDLKREECENLFPSGRVYSQAFHLGGQG 259 (359)
Q Consensus 218 ~v~~ydp~~~~W~~---m~~~R~~~~v~v~~g~iY~~~f~~gG~~ 259 (359)
++++|||.+++|.. ||.+|..+++++++|+||+ +||+.
T Consensus 291 ~~e~yd~~~~~W~~~~~lp~~~~~~~~~~~~~~iyv----~GG~~ 331 (346)
T TIGR03547 291 SSEVYALDNGKWSKVGKLPQGLAYGVSVSWNNGVLL----IGGEN 331 (346)
T ss_pred EeeEEEecCCcccccCCCCCCceeeEEEEcCCEEEE----EeccC
Confidence 68999999999998 8889999999899999999 88863
No 26
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=96.01 E-value=0.0082 Score=59.29 Aligned_cols=37 Identities=14% Similarity=-0.089 Sum_probs=33.8
Q ss_pred eEEEeeCCCCceEe---ccCCCcceEEEeeCCcEEEeeeeeCCc
Q 018217 218 VVEFERPRQQCVVY---LDLKREECENLFPSGRVYSQAFHLGGQ 258 (359)
Q Consensus 218 ~v~~ydp~~~~W~~---m~~~R~~~~v~v~~g~iY~~~f~~gG~ 258 (359)
.++.|||.+++|.. ||.+|.++++++++|.||+ +||.
T Consensus 313 ~~e~yd~~~~~W~~~~~lp~~r~~~~av~~~~~iyv----~GG~ 352 (376)
T PRK14131 313 SDEIYALVNGKWQKVGELPQGLAYGVSVSWNNGVLL----IGGE 352 (376)
T ss_pred ehheEEecCCcccccCcCCCCccceEEEEeCCEEEE----EcCC
Confidence 57899999999988 8999999999999999999 7885
No 27
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=95.56 E-value=0.017 Score=53.76 Aligned_cols=47 Identities=15% Similarity=0.213 Sum_probs=39.7
Q ss_pred eEEEEecC-------CCeEEEeeCCCCceEe------ccCCCcceEEEeeCCcEEEeeeeeCCc
Q 018217 208 ERAYKYRP-------VKVVEFERPRQQCVVY------LDLKREECENLFPSGRVYSQAFHLGGQ 258 (359)
Q Consensus 208 ~~i~v~~~-------~~~v~~ydp~~~~W~~------m~~~R~~~~v~v~~g~iY~~~f~~gG~ 258 (359)
+.+|+.++ -+...+|||+++.|.. .|..|.+|++||+++..|+ +||+
T Consensus 89 d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~Myi----FGGy 148 (392)
T KOG4693|consen 89 DKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYI----FGGY 148 (392)
T ss_pred ceEEEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEE----ecCh
Confidence 56777322 3478899999999997 7899999999999999999 8995
No 28
>PLN02153 epithiospecifier protein
Probab=95.54 E-value=0.026 Score=54.83 Aligned_cols=39 Identities=15% Similarity=0.140 Sum_probs=34.5
Q ss_pred CCeEEEeeCCCCceEe------ccCCCcceEEEeeCCcEEEeeeeeCCc
Q 018217 216 VKVVEFERPRQQCVVY------LDLKREECENLFPSGRVYSQAFHLGGQ 258 (359)
Q Consensus 216 ~~~v~~ydp~~~~W~~------m~~~R~~~~v~v~~g~iY~~~f~~gG~ 258 (359)
.+.+++|||.+++|.. +|.+|..+++++++++||+ +||.
T Consensus 216 ~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv----~GG~ 260 (341)
T PLN02153 216 SNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIII----FGGE 260 (341)
T ss_pred cCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEE----ECcc
Confidence 3579999999999998 4678999999999999999 8885
No 29
>PF13964 Kelch_6: Kelch motif
Probab=94.99 E-value=0.038 Score=37.90 Aligned_cols=29 Identities=17% Similarity=0.149 Sum_probs=22.6
Q ss_pred eEEEEec-------CCCeEEEeeCCCCceEe---ccCCC
Q 018217 208 ERAYKYR-------PVKVVEFERPRQQCVVY---LDLKR 236 (359)
Q Consensus 208 ~~i~v~~-------~~~~v~~ydp~~~~W~~---m~~~R 236 (359)
+.||+.+ ..+.+++|||.+++|.. ||.+|
T Consensus 12 ~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 12 GKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCCC
Confidence 5677722 24689999999999999 77666
No 30
>PF13854 Kelch_5: Kelch motif
Probab=94.43 E-value=0.045 Score=36.31 Aligned_cols=24 Identities=17% Similarity=0.326 Sum_probs=21.5
Q ss_pred ccCCCcceEEEeeCCcEEEeeeeeCCcc
Q 018217 232 LDLKREECENLFPSGRVYSQAFHLGGQG 259 (359)
Q Consensus 232 m~~~R~~~~v~v~~g~iY~~~f~~gG~~ 259 (359)
+|.+|.+|++++.++.||+ +||..
T Consensus 1 ~P~~R~~hs~~~~~~~iyi----~GG~~ 24 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYI----FGGYS 24 (42)
T ss_pred CCCCccceEEEEECCEEEE----EcCcc
Confidence 5889999999999999999 88865
No 31
>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway. It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1
Probab=93.99 E-value=0.39 Score=40.25 Aligned_cols=111 Identities=14% Similarity=0.175 Sum_probs=64.7
Q ss_pred CCcEEEeeeeeCCccccccccc-ccCC-CCCceeeeeEEeeeccCc---eeeEEEeeeeeccCc-ccccccccceeEEee
Q 018217 245 SGRVYSQAFHLGGQGFFLSAHC-NMDQ-QSSFHCFGLFLGMQEKGS---VSFAVDYEFAARSKP-TEEFVSKYKGNYTFT 318 (359)
Q Consensus 245 ~g~iY~~~f~~gG~~~~l~~~c-~~~~-~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 318 (359)
+..+|+..|.+||..-.+.... .... .+..-..+++|.+..+.. -++.+.+++.--.+. .+.... ....+.|.
T Consensus 16 ~e~~~S~~f~vgG~~W~i~~~P~g~~~~~~~~~~lsvyL~~~~~~~~~~w~i~a~~~~~l~~~~~~~~~~~-~~~~~~f~ 94 (137)
T cd03772 16 SESVLSPPCFVRNLPWKIMVMPRNYPDRNPHQKSVGFFLQCNAESDSTSWSCHAQAVLRIINYKDDEPSFS-RRISHLFF 94 (137)
T ss_pred CCcEECCCEEECCcceEEEEEeCCCCCCCCCCCeEEEEEeeCCcCCCCCCeEEEEEEEEEEcCCCCcccEE-EeeeeEEc
Confidence 6678888899999643332211 0010 011234667776533221 135555555443322 122222 23335664
Q ss_pred C-CcccccccCCCCCCceeeeCCCceeecceEEEEeeeeee
Q 018217 319 G-GKAVGYRNLFAIPWTSFMADDSLYFINGILHLRAELTIR 358 (359)
Q Consensus 319 ~-~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (359)
. +..+|+..+ ++|..+.++++.|-+||-+-+++++||.
T Consensus 95 ~~~~~~G~~~f--i~~~~L~~~~sgyl~~D~l~Ie~~V~~~ 133 (137)
T cd03772 95 SKENDWGFSNF--MTWSEVTDPEKGFIEDDTITLEVYVQAD 133 (137)
T ss_pred CCCCCccchhe--eEHHHhcCCCCCcEECCEEEEEEEEEee
Confidence 3 345777666 7899999888999999999999999984
No 32
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=93.97 E-value=0.21 Score=46.82 Aligned_cols=107 Identities=19% Similarity=0.206 Sum_probs=66.8
Q ss_pred eEEEeeCCCCceEe------ccCCCcceEEEeeCCcEEEeeeeeCCcccccccccccCCCCCceeeeeEEeeeccCceee
Q 018217 218 VVEFERPRQQCVVY------LDLKREECENLFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSF 291 (359)
Q Consensus 218 ~v~~ydp~~~~W~~------m~~~R~~~~v~v~~g~iY~~~f~~gG~~~~l~~~c~~~~~~~~~~~~~~~g~~~~~~~~~ 291 (359)
.+...|-.+..|.. .|..|..|+.-+.||.+|+ +||+.-.|..+= +-.-||.-.--+....+.-
T Consensus 217 ~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~----FGGYng~ln~Hf-----ndLy~FdP~t~~W~~I~~~- 286 (392)
T KOG4693|consen 217 TIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYM----FGGYNGTLNVHF-----NDLYCFDPKTSMWSVISVR- 286 (392)
T ss_pred eeEEEeccccccccCCCCCcCCCcccccceEEEcceEEE----ecccchhhhhhh-----cceeecccccchheeeecc-
Confidence 67788999999998 5678999999999999999 999865555443 1233333222222211100
Q ss_pred EEEeeeeeccCcccccccccceeEEeeCCcccccccCCCCCCceeee
Q 018217 292 AVDYEFAARSKPTEEFVSKYKGNYTFTGGKAVGYRNLFAIPWTSFMA 338 (359)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 338 (359)
=.|+ .+|.| .|=+.+..+.|-|+|-+-.-|--+.+.+-+..++
T Consensus 287 -Gk~P-~aRRR--qC~~v~g~kv~LFGGTsP~~~~~~Spt~~~G~~~ 329 (392)
T KOG4693|consen 287 -GKYP-SARRR--QCSVVSGGKVYLFGGTSPLPCHPLSPTNYNGMIS 329 (392)
T ss_pred -CCCC-Ccccc--eeEEEECCEEEEecCCCCCCCCCCCccccCCCCC
Confidence 0133 46666 3555567777777776555555566666665443
No 33
>PLN02193 nitrile-specifier protein
Probab=93.94 E-value=0.1 Score=53.22 Aligned_cols=39 Identities=18% Similarity=0.207 Sum_probs=34.7
Q ss_pred CCeEEEeeCCCCceEec------cCCCcceEEEeeCCcEEEeeeeeCCc
Q 018217 216 VKVVEFERPRQQCVVYL------DLKREECENLFPSGRVYSQAFHLGGQ 258 (359)
Q Consensus 216 ~~~v~~ydp~~~~W~~m------~~~R~~~~v~v~~g~iY~~~f~~gG~ 258 (359)
.+.+++|||.+++|..+ |.+|..|++++++++||+ +||.
T Consensus 342 ~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv----~GG~ 386 (470)
T PLN02193 342 VDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVI----FGGE 386 (470)
T ss_pred cCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEE----ECCc
Confidence 46899999999999982 678999999999999999 7885
No 34
>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP. SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta
Probab=93.37 E-value=0.38 Score=40.39 Aligned_cols=111 Identities=18% Similarity=0.293 Sum_probs=60.9
Q ss_pred CCcEEEeeeeeCCc---cccccccc-ccCCCCCceeeeeEEeeeccCceeeEEEeeeeeccCcccccccccc-eeEEeeC
Q 018217 245 SGRVYSQAFHLGGQ---GFFLSAHC-NMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARSKPTEEFVSKYK-GNYTFTG 319 (359)
Q Consensus 245 ~g~iY~~~f~~gG~---~~~l~~~c-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 319 (359)
+..+++..|.+||. ...+...- ..++. ....-.++|-+......++.+.|.|..-.+.........+ ..+.|.+
T Consensus 22 ~~~i~S~~F~vgg~~~~~W~l~~yP~G~~~~-~~~~iSlyL~l~~~~~~~v~a~f~~~l~n~~~~~~~~~~~~~~~~f~~ 100 (139)
T cd03774 22 GEVIKSSTFSSGANDKLKWCLRVNPKGLDEE-SKDYLSLYLLLVSCPKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQ 100 (139)
T ss_pred CCEEECCCeecCCcCCceEEEEEeCCCCCCC-CCCeEEEEEEEccCCCCcEEEEEEEEEEecCCCeeeeecccCcEeCCC
Confidence 55788888999994 22222111 11111 1223456665433222245555555433322122211112 2466666
Q ss_pred CcccccccCCCCCCceeeeCCCceeecceEEEEeeeeee
Q 018217 320 GKAVGYRNLFAIPWTSFMADDSLYFINGILHLRAELTIR 358 (359)
Q Consensus 320 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (359)
+..+|+..+ ++++.+.+..+.|..||-|=+++++||+
T Consensus 101 ~~~wG~~~f--i~~~~L~~~~~g~l~dD~l~I~c~I~V~ 137 (139)
T cd03774 101 GKDWGFKKF--IRRDFLLDEANGLLPDDKLTLFCEVSVV 137 (139)
T ss_pred CCccCHHHe--eeHHHhhhhhcccccCCEEEEEEEEEEE
Confidence 666776654 5666666556778899999999999986
No 35
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=93.09 E-value=0.072 Score=35.73 Aligned_cols=21 Identities=19% Similarity=0.474 Sum_probs=17.5
Q ss_pred CCcceEEEeeCCcEEEeeeeeCCcc
Q 018217 235 KREECENLFPSGRVYSQAFHLGGQG 259 (359)
Q Consensus 235 ~R~~~~v~v~~g~iY~~~f~~gG~~ 259 (359)
+|.+|+++++++.||+ +||..
T Consensus 1 pR~~~~~~~~~~~iyv----~GG~~ 21 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYV----IGGYD 21 (47)
T ss_dssp -BBSEEEEEETTEEEE----EEEBE
T ss_pred CCccCEEEEECCEEEE----Eeeec
Confidence 6899999999999999 66653
No 36
>PF13964 Kelch_6: Kelch motif
Probab=92.67 E-value=0.11 Score=35.51 Aligned_cols=21 Identities=24% Similarity=0.517 Sum_probs=18.8
Q ss_pred CCcceEEEeeCCcEEEeeeeeCCcc
Q 018217 235 KREECENLFPSGRVYSQAFHLGGQG 259 (359)
Q Consensus 235 ~R~~~~v~v~~g~iY~~~f~~gG~~ 259 (359)
+|.++++++++++||+ +||..
T Consensus 1 pR~~~s~v~~~~~iyv----~GG~~ 21 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYV----FGGYD 21 (50)
T ss_pred CCccCEEEEECCEEEE----ECCCC
Confidence 6899999999999999 88864
No 37
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=92.59 E-value=0.17 Score=34.49 Aligned_cols=29 Identities=10% Similarity=-0.147 Sum_probs=25.4
Q ss_pred CCeEEEeeCCCCceEe---ccCCCcceEEEee
Q 018217 216 VKVVEFERPRQQCVVY---LDLKREECENLFP 244 (359)
Q Consensus 216 ~~~v~~ydp~~~~W~~---m~~~R~~~~v~v~ 244 (359)
.+.+..||+.+++|.. +|.+|.+|+++++
T Consensus 18 ~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 18 LNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI 49 (49)
T ss_pred ecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence 3578999999999999 8899999998763
No 38
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=92.21 E-value=0.31 Score=49.99 Aligned_cols=39 Identities=3% Similarity=-0.166 Sum_probs=34.1
Q ss_pred CCeEEEeeCCCCceEe------ccCCCcceEEEeeCCcEEEeeee
Q 018217 216 VKVVEFERPRQQCVVY------LDLKREECENLFPSGRVYSQAFH 254 (359)
Q Consensus 216 ~~~v~~ydp~~~~W~~------m~~~R~~~~v~v~~g~iY~~~f~ 254 (359)
.+.+..||++++.|.. -|.||.+|++++.+++++++++.
T Consensus 189 ~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~ 233 (482)
T KOG0379|consen 189 LNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGG 233 (482)
T ss_pred eeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEecc
Confidence 5689999999999999 57899999999999999985433
No 39
>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma
Probab=92.13 E-value=0.57 Score=37.38 Aligned_cols=108 Identities=19% Similarity=0.334 Sum_probs=65.0
Q ss_pred eCCcEEEeeeeeCCcccccccccccCCCCCceeeeeEEeeeccC----ceeeEEEeeeeeccCcccccccccceeEEe-e
Q 018217 244 PSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKG----SVSFAVDYEFAARSKPTEEFVSKYKGNYTF-T 318 (359)
Q Consensus 244 ~~g~iY~~~f~~gG~~~~l~~~c~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 318 (359)
.++.+|+..|..||....+.....-+.. .....+++|-..... ...+.+++.+..-....++-..+......+ .
T Consensus 14 ~~~~~~S~~f~~~g~~W~l~~~p~~~~~-~~~~lsv~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 92 (126)
T cd00121 14 EGESIYSPPFEVGGYKWRIRIYPNGDGE-SGDYLSLYLELDKGESDLEKWSVRAEFTLKLVNQNGGKSLSKSFTHVFFSE 92 (126)
T ss_pred CCcEEECCCEEEcCEeEEEEEEcCCCCC-CCCEEEEEEEecCCCCCCCCCcEEEEEEEEEECCCCCccceEeccCCcCCC
Confidence 4667777778888875555444322211 234677777654332 124656676655554335554444444333 3
Q ss_pred CCcccccccCCCCCCceeeeCCCceeecceEEEEeeee
Q 018217 319 GGKAVGYRNLFAIPWTSFMADDSLYFINGILHLRAELT 356 (359)
Q Consensus 319 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 356 (359)
.+.+.|+.++ ++|..+..+.. .+||.|-++++++
T Consensus 93 ~~~~~G~~~f--i~~~~l~~~~~--~~~d~l~i~~~v~ 126 (126)
T cd00121 93 KGSGWGFPKF--ISWDDLEDSYY--LVDDSLTIEVEVK 126 (126)
T ss_pred CCCCCChHHe--eEHHHhccCCc--EECCEEEEEEEEC
Confidence 4567888766 77888776543 7999999999863
No 40
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=92.07 E-value=0.082 Score=40.21 Aligned_cols=31 Identities=23% Similarity=0.509 Sum_probs=26.3
Q ss_pred eCCcchHHHHHHHhhccChhhHHHHHHHHccC
Q 018217 14 TTAAPALLDVLMAADKFEVASCMRYCSRLLRN 45 (359)
Q Consensus 14 i~~~~nV~~lL~aA~~lqv~~l~~~C~~fL~~ 45 (359)
++. +.+.+|+.||++|+|+.|++.||+++..
T Consensus 11 ~~~-~~L~~l~~AA~yL~I~~L~~~~~~~iA~ 41 (78)
T PF01466_consen 11 VDN-DELFDLLNAANYLDIKGLLDLCCKYIAN 41 (78)
T ss_dssp S-H-HHHHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred cCH-HHHHHHHHHHHHHcchHHHHHHHHHHHH
Confidence 444 7899999999999999999999998876
No 41
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=91.97 E-value=0.27 Score=50.33 Aligned_cols=38 Identities=8% Similarity=-0.009 Sum_probs=34.7
Q ss_pred CeEEEeeCCCCceEe------ccCCCcceEEEeeCCcEEEeeeeeCCc
Q 018217 217 KVVEFERPRQQCVVY------LDLKREECENLFPSGRVYSQAFHLGGQ 258 (359)
Q Consensus 217 ~~v~~ydp~~~~W~~------m~~~R~~~~v~v~~g~iY~~~f~~gG~ 258 (359)
..+..||+.+++|.. .|.+|.+|++++.+++||+ +||.
T Consensus 139 ~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~v----fGG~ 182 (482)
T KOG0379|consen 139 NELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVV----FGGI 182 (482)
T ss_pred hheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEE----ECCc
Confidence 489999999999999 5889999999999999999 7775
No 42
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=91.70 E-value=0.027 Score=53.90 Aligned_cols=37 Identities=11% Similarity=0.144 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHhcchhhhhcccccccccCHHHHHHH
Q 018217 69 VQPLTDAARQYLASRYKDMTKFQDEVMALPLAGVEAI 105 (359)
Q Consensus 69 ~~~L~~~a~~fi~~nf~~v~~~~~eFl~L~~~~l~~l 105 (359)
.++|.+.|..|+.+|+.+|+.+.-++..|+.+.|..|
T Consensus 89 M~~Lve~cl~y~~~~~~~Iv~~~~nl~Cl~~~Ll~RL 125 (317)
T PF11822_consen 89 MESLVEECLQYCHDHMSEIVASPCNLNCLNDNLLTRL 125 (317)
T ss_pred cHHHHHHHHHHHHHhHHHHHcCCCCcccCCHHHHHHH
Confidence 4445555555555666677664556777777776666
No 43
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=91.01 E-value=0.23 Score=33.84 Aligned_cols=20 Identities=25% Similarity=0.534 Sum_probs=18.0
Q ss_pred CCcceEEEeeCCcEEEeeeeeCCc
Q 018217 235 KREECENLFPSGRVYSQAFHLGGQ 258 (359)
Q Consensus 235 ~R~~~~v~v~~g~iY~~~f~~gG~ 258 (359)
+|.+|++++++++||+ +||.
T Consensus 1 ~r~~hs~~~~~~kiyv----~GG~ 20 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYV----FGGY 20 (49)
T ss_pred CccceEEEEECCEEEE----ECCc
Confidence 6889999999999999 7776
No 44
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=90.80 E-value=0.46 Score=46.87 Aligned_cols=114 Identities=17% Similarity=0.211 Sum_probs=75.8
Q ss_pred chHHHHHHHhhccChhhHHHHHHHHccCCCCChhhHHHHHHhccccccccChHHHHHHHHHHHhcchhhhhccccccccc
Q 018217 18 PALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMAL 97 (359)
Q Consensus 18 ~nV~~lL~aA~~lqv~~l~~~C~~fL~~~~l~~~Ncl~i~~~A~~~~~~~~~~~L~~~a~~fi~~nf~~v~~~~~eFl~L 97 (359)
+||..++.||.+||+++|.+.|+.|+.+ |+-+++. ..+...|.+.+ ..++.. .+.|...
T Consensus 148 ~NvCmifdaA~ly~l~~Lt~~C~mfmDr------nA~~lL~-------~~sFn~LSk~s-------L~e~l~-RDsFfAp 206 (620)
T KOG4350|consen 148 ENVCMIFDAAYLYQLTDLTDYCMMFMDR------NADQLLE-------DPSFNRLSKDS-------LKELLA-RDSFFAP 206 (620)
T ss_pred cceeeeeeHHHHhcchHHHHHHHHHHhc------CHHhhhc-------CcchhhhhHHH-------HHHHHh-hhcccch
Confidence 7999999999999999999999999988 2333332 12344444443 345555 6778777
Q ss_pred CHHHHHHHhcCCCcccCChHHHHHHHHHhhhhcCCChHHHHHHHhHhhhccccCC-CCCHHHHHhhh
Q 018217 98 PLAGVEAILSSDDLQIASEDAVYDFVLKWARAQYPRVEERREVLGSRLARFIRFP-HMTCRKLKKVL 163 (359)
Q Consensus 98 ~~~~l~~lL~sd~L~V~sE~~Vf~avl~Wv~~d~~~~~~R~~~l~~~LL~~VRf~-ll~~~~L~~~~ 163 (359)
..+...++.+=..-|- .+-+..++..++-. .-.+ .+||..||-. +++++.+.+.+
T Consensus 207 E~~IFlAv~~W~~~Ns---ke~~k~~~~~VRLP-------Lm~l-teLLnvVRPsGllspD~iLDAI 262 (620)
T KOG4350|consen 207 ELKIFLAVRSWHQNNS---KEASKVLLELVRLP-------LMTL-TELLNVVRPSGLLSPDTILDAI 262 (620)
T ss_pred HHHHHHHHHHHHhcCc---hhhHHHHHHHHhhh-------hccH-HHHHhccCcccCcCHHHHHHHH
Confidence 7777777776544432 33455566665542 1234 6889999976 56888776643
No 45
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=90.20 E-value=0.33 Score=32.39 Aligned_cols=17 Identities=24% Similarity=0.177 Sum_probs=15.1
Q ss_pred CCeEEEeeCCCCceEec
Q 018217 216 VKVVEFERPRQQCVVYL 232 (359)
Q Consensus 216 ~~~v~~ydp~~~~W~~m 232 (359)
++++++|||.+++|..+
T Consensus 27 ~~~v~~yd~~~~~W~~~ 43 (47)
T PF01344_consen 27 TNSVEVYDPETNTWEEL 43 (47)
T ss_dssp EEEEEEEETTTTEEEEE
T ss_pred eeeEEEEeCCCCEEEEc
Confidence 46899999999999983
No 46
>PLN02772 guanylate kinase
Probab=88.07 E-value=1 Score=44.82 Aligned_cols=44 Identities=9% Similarity=-0.043 Sum_probs=36.2
Q ss_pred eEEEEec-------CCCeEEEeeCCCCceEe------ccCCCcceEEEee-CCcEEEe
Q 018217 208 ERAYKYR-------PVKVVEFERPRQQCVVY------LDLKREECENLFP-SGRVYSQ 251 (359)
Q Consensus 208 ~~i~v~~-------~~~~v~~ydp~~~~W~~------m~~~R~~~~v~v~-~g~iY~~ 251 (359)
+.+|+.+ ....+.+||+.+++|.. -|.+|.+|+++++ +++|+++
T Consensus 35 dk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~ 92 (398)
T PLN02772 35 DKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVI 92 (398)
T ss_pred CEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEE
Confidence 6788732 23479999999999998 6789999999999 6899984
No 47
>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins. Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i
Probab=86.84 E-value=2.4 Score=34.92 Aligned_cols=106 Identities=16% Similarity=0.238 Sum_probs=55.1
Q ss_pred CCcEEEeeeeeCCcccccccccccCCCCCceeeeeEEeeeccCceeeEEEeeeeeccC-cccccccccceeEEeeCCccc
Q 018217 245 SGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARSK-PTEEFVSKYKGNYTFTGGKAV 323 (359)
Q Consensus 245 ~g~iY~~~f~~gG~~~~l~~~c~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 323 (359)
+..+++..|.+||....+.....=+..+......++|-+..+.......+|.+..-.. ...+.. .....+.|..+.++
T Consensus 21 ~~~~~S~~F~vgG~~W~i~~yP~G~~~~~~~~lSl~L~l~~~~~~~~~~~~~l~llnq~~~~~~~-~~~~~~~f~~~~~w 99 (132)
T cd03773 21 ADPVYSDPLNVDGLCWRLKVYPDGNGEVRGNFLSVFLELCSGLGEASKYEYRVEMVHQANPTKNI-KREFASDFEVGECW 99 (132)
T ss_pred CcceeCCCeEeCCccEEEEEECCCCCCCCCCEEEEEEEeecCCCCceeEEEEEEEEcCCCCccce-EEeccccccCCCCc
Confidence 4678888999999866565443111111223356666554322223333433322111 112222 23345667666667
Q ss_pred ccccCCCCCCceeeeCCCceeec--ceEEEEeee
Q 018217 324 GYRNLFAIPWTSFMADDSLYFIN--GILHLRAEL 355 (359)
Q Consensus 324 ~~~~~~~~~w~~~~~~~~~~~~~--~~~~~~~~~ 355 (359)
|+.++ ++...+. ++.|-.| |.|-+|.++
T Consensus 100 G~~~F--i~~~~L~--~~gfl~~~~D~l~i~~~v 129 (132)
T cd03773 100 GYNRF--FRLDLLI--NEGYLLPENDTLILRFSV 129 (132)
T ss_pred CHHHh--ccHHHHh--hCCCcCCCCCEEEEEEEE
Confidence 77665 4455553 3446667 888877765
No 48
>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []. Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....
Probab=86.46 E-value=1.6 Score=34.79 Aligned_cols=98 Identities=17% Similarity=0.332 Sum_probs=57.1
Q ss_pred eeeeeCCcccccccccccCCCCCceeeeeEEeeecc--Cc---eeeEEEeeeeeccCcccccccccceeEEeeCCccccc
Q 018217 251 QAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEK--GS---VSFAVDYEFAARSKPTEEFVSKYKGNYTFTGGKAVGY 325 (359)
Q Consensus 251 ~~f~~gG~~~~l~~~c~~~~~~~~~~~~~~~g~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (359)
-.|..||..-.+....+-+ ...+++++.+... .+ -++.+++.+..-.. .|.-..+....+.|++..++|+
T Consensus 17 ~~~~~~g~~W~l~~~~~~~----~~~l~~~L~~~~~~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~~~~F~~~~~~g~ 91 (119)
T PF00917_consen 17 FVFSHGGYPWRLKVYPKGN----GKYLSVYLHCDKGENDSDLEWSIEAEFRFRLLNQ-NGKSISKRIKSHSFNNPSSWGW 91 (119)
T ss_dssp EESSTTSEEEEEEEETTES----TTEEEEEEEEECSTTGGGSSSSEEEEEEEEEE-T-TSCEEEEEEECEEECTTSEEEE
T ss_pred CeEEECCEEEEEEEEeCCC----cCcEEEEEEEeecccccccceeeeEEEEEEEecC-CCCcceeeeeeeEEeeecccch
Confidence 3567788655444433111 2245666655332 22 22444555433332 2222333333689998878887
Q ss_pred ccCCCCCCceeeeCCCceeecceEEEEeeeee
Q 018217 326 RNLFAIPWTSFMADDSLYFINGILHLRAELTI 357 (359)
Q Consensus 326 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 357 (359)
.++ ++|..+.... |.+||-|-+.++++|
T Consensus 92 ~~f--i~~~~l~~~~--fl~dd~l~ie~~v~I 119 (119)
T PF00917_consen 92 SSF--ISWEDLEDPY--FLVDDSLTIEVEVKI 119 (119)
T ss_dssp EEE--EEHHHHTTCT--TSBTTEEEEEEEEEE
T ss_pred hhe--eEHHHhCccC--CeECCEEEEEEEEEC
Confidence 664 7777776655 899999999999986
No 49
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=84.48 E-value=2.5 Score=42.06 Aligned_cols=103 Identities=17% Similarity=0.169 Sum_probs=60.9
Q ss_pred CeEEEeeCCCCceEe-----ccCCCcce-EEEeeCCcEEEeeeeeCCcccccccccccCCCCCceeeeeEE-eee----c
Q 018217 217 KVVEFERPRQQCVVY-----LDLKREEC-ENLFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFL-GMQ----E 285 (359)
Q Consensus 217 ~~v~~ydp~~~~W~~-----m~~~R~~~-~v~v~~g~iY~~~f~~gG~~~~l~~~c~~~~~~~~~~~~~~~-g~~----~ 285 (359)
+....||.++++|+. -|.||+.| +||+..|.+|+ +||.- .+ =+|....|--.+.+ .+. +
T Consensus 98 ndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~----fGGEf--aS----Pnq~qF~HYkD~W~fd~~trkwe 167 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWL----FGGEF--AS----PNQEQFHHYKDLWLFDLKTRKWE 167 (521)
T ss_pred eeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEE----ecccc--CC----cchhhhhhhhheeeeeeccchhe
Confidence 567899999999998 56788877 45555699998 77741 11 12222222222221 111 1
Q ss_pred --cCceeeEEEeeeeeccCcccccccccceeEEeeCCc-----------ccccccCCCCCCceeee
Q 018217 286 --KGSVSFAVDYEFAARSKPTEEFVSKYKGNYTFTGGK-----------AVGYRNLFAIPWTSFMA 338 (359)
Q Consensus 286 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~w~~~~~ 338 (359)
+-.|+ +.+| +|.=+.-+|..+-+.||- -+=|+||-+-+|+.+--
T Consensus 168 ql~~~g~------PS~R---SGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klep 224 (521)
T KOG1230|consen 168 QLEFGGG------PSPR---SGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEP 224 (521)
T ss_pred eeccCCC------CCCC---ccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccC
Confidence 11111 2233 667777777777777775 35567788888887643
No 50
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=81.90 E-value=0.77 Score=44.15 Aligned_cols=51 Identities=16% Similarity=0.343 Sum_probs=42.9
Q ss_pred eeeeEeeCeEeeCCcchHHHHHHHhhccChhhHHHHHHHHccCCCCChhhHHHHHHhc
Q 018217 3 LLNFMYSNTLSTTAAPALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELP 60 (359)
Q Consensus 3 lL~y~YTg~i~i~~~~nV~~lL~aA~~lqv~~l~~~C~~fL~~~~l~~~Ncl~i~~~A 60 (359)
|++|+......++. +||..||..|++|||++|++.|-.|+.+ +| -+|....
T Consensus 61 Lm~yv~~~~p~l~~-~NvvsIliSS~FL~M~~Lve~cl~y~~~-~~-----~~Iv~~~ 111 (317)
T PF11822_consen 61 LMRYVKGEPPSLTP-SNVVSILISSEFLQMESLVEECLQYCHD-HM-----SEIVASP 111 (317)
T ss_pred HHHHhhcCCCcCCc-CcEEEeEehhhhhccHHHHHHHHHHHHH-hH-----HHHHcCC
Confidence 56778877888886 9999999999999999999999999988 55 3555544
No 51
>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast. Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.
Probab=79.00 E-value=15 Score=30.41 Aligned_cols=106 Identities=14% Similarity=0.228 Sum_probs=55.2
Q ss_pred CCcEEEeeeeeCCcccccccccccCCCCCceeeeeEEeeeccCc-------e-eeEEEeeeeeccCccccccc-ccceeE
Q 018217 245 SGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGS-------V-SFAVDYEFAARSKPTEEFVS-KYKGNY 315 (359)
Q Consensus 245 ~g~iY~~~f~~gG~~~~l~~~c~~~~~~~~~~~~~~~g~~~~~~-------~-~~~~~~~~~~~~~~~~~~~~-~~~~~~ 315 (359)
++.+++..|.+||....+....+=+. ......++|-+....+ + ++.+.+.+..-.. .+.... .....+
T Consensus 14 ~~~~~S~~F~vGG~~W~l~~yP~G~~--~~~~iSlyL~l~~~~~~~~~~~~~~~v~a~f~~~l~n~-~~~~~~~~~~~~~ 90 (134)
T cd03775 14 EKKVHSPKFKCGGFEWRILLFPQGNS--QTGGVSIYLEPHPEEEEKAPLDEDWSVCAQFALVISNP-GDPSIQLSNVAHH 90 (134)
T ss_pred CcceeCCCEEECCeeEEEEEeCCCCC--CCCeEEEEEEecCcccccccCCCCCeEEEEEEEEEEcC-CCCccceEcccee
Confidence 67888899999997655543331111 1233566665432211 1 1334444422221 121211 123467
Q ss_pred EeeC-CcccccccCCCCCCceee----eCCCceeecceEEEEeee
Q 018217 316 TFTG-GKAVGYRNLFAIPWTSFM----ADDSLYFINGILHLRAEL 355 (359)
Q Consensus 316 ~~~~-~~~~~~~~~~~~~w~~~~----~~~~~~~~~~~~~~~~~~ 355 (359)
.|.. +.++|+..+ ++++.+- +.++.|-.||.|-+.+.+
T Consensus 91 ~F~~~~~~wG~~~f--i~~~~L~~~~~~~~~g~l~nD~l~I~~~~ 133 (134)
T cd03775 91 RFNAEDKDWGFTRF--IELRKLAHRTPDKPSPFLENGELNITVYV 133 (134)
T ss_pred EeCCCCCCCChhHc--ccHHHHcccccCCCCceeECCEEEEEEEE
Confidence 7764 445776665 5555554 235678888887777664
No 52
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=76.76 E-value=1.4 Score=40.59 Aligned_cols=44 Identities=18% Similarity=0.384 Sum_probs=37.5
Q ss_pred ceeeeEeeCeEeeCCc-chHHHHHHHhhccChhhHHHHHHHHccC
Q 018217 2 ELLNFMYSNTLSTTAA-PALLDVLMAADKFEVASCMRYCSRLLRN 45 (359)
Q Consensus 2 ~lL~y~YTg~i~i~~~-~nV~~lL~aA~~lqv~~l~~~C~~fL~~ 45 (359)
.||+||-.|.+.+.+. ..+.+++.-|.+|++++|++.|..-+..
T Consensus 59 ~ILNfmRdGdv~LPe~~kel~El~~EA~fYlL~~Lv~~C~~~i~~ 103 (230)
T KOG2716|consen 59 TILNFMRDGDVDLPESEKELKELLREAEFYLLDGLVELCQSAIAR 103 (230)
T ss_pred HHHHhhhcccccCccchHHHHHHHHHHHHhhHHHHHHHHHHHhhh
Confidence 4799999999887541 4688999999999999999999997666
No 53
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=75.15 E-value=2.2 Score=37.25 Aligned_cols=31 Identities=16% Similarity=0.395 Sum_probs=27.5
Q ss_pred eCCcchHHHHHHHhhccChhhHHHHHHHHccC
Q 018217 14 TTAAPALLDVLMAADKFEVASCMRYCSRLLRN 45 (359)
Q Consensus 14 i~~~~nV~~lL~aA~~lqv~~l~~~C~~fL~~ 45 (359)
+.. +++.+++.||++|.|++|++.||+.+-.
T Consensus 95 ~d~-~tLfdli~AAnyLdi~gLl~~~ck~va~ 125 (162)
T KOG1724|consen 95 VDQ-GTLFDLILAANYLDIKGLLDLTCKTVAN 125 (162)
T ss_pred cCH-HHHHHHHHHhhhcccHHHHHHHHHHHHH
Confidence 444 6899999999999999999999997766
No 54
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=75.06 E-value=2.5 Score=28.39 Aligned_cols=21 Identities=19% Similarity=0.366 Sum_probs=13.1
Q ss_pred CCcceEEEee-CCcEEEeeeeeCCcc
Q 018217 235 KREECENLFP-SGRVYSQAFHLGGQG 259 (359)
Q Consensus 235 ~R~~~~v~v~-~g~iY~~~f~~gG~~ 259 (359)
+|.+|+++.+ ++.||+ +||..
T Consensus 1 pR~~h~~~~~~~~~i~v----~GG~~ 22 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYV----FGGRD 22 (49)
T ss_dssp --BS-EEEEE-TTEEEE----E--EE
T ss_pred CcceEEEEEEeCCeEEE----ECCCC
Confidence 5888988888 589998 88863
No 55
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=73.51 E-value=7.6 Score=38.75 Aligned_cols=39 Identities=15% Similarity=0.018 Sum_probs=34.1
Q ss_pred CCeEEEeeCCCCceEe------ccCCCcceEEEee-CCcEEEeeeeeCCc
Q 018217 216 VKVVEFERPRQQCVVY------LDLKREECENLFP-SGRVYSQAFHLGGQ 258 (359)
Q Consensus 216 ~~~v~~ydp~~~~W~~------m~~~R~~~~v~v~-~g~iY~~~f~~gG~ 258 (359)
.+.|.+||..+-+|.. .|.+|++|...+- .|.||+ .||+
T Consensus 206 yNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~v----yGGY 251 (521)
T KOG1230|consen 206 YNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVV----YGGY 251 (521)
T ss_pred eeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEE----Ecch
Confidence 4688999999999998 4789999988876 999998 8996
No 56
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=70.57 E-value=14 Score=28.60 Aligned_cols=82 Identities=11% Similarity=0.158 Sum_probs=47.2
Q ss_pred HHHHHHhhccChhhHHHHHHHHccCC-----------CCChhhHHHHHHhccccccccChHHHHHHHHHHHhcchh----
Q 018217 21 LDVLMAADKFEVASCMRYCSRLLRNM-----------PMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYK---- 85 (359)
Q Consensus 21 ~~lL~aA~~lqv~~l~~~C~~fL~~~-----------~l~~~Ncl~i~~~A~~~~~~~~~~~L~~~a~~fi~~nf~---- 85 (359)
.+++..|..++.+.+.+.|.+|+... +++.+....++.--+. ....-.++.+++.+|+..+..
T Consensus 2 ~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~~l~~iL~~~~l--~v~~E~~v~~av~~W~~~~~~~r~~ 79 (103)
T PF07707_consen 2 LSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPFDQLIEILSSDDL--NVSSEDDVFEAVLRWLKHNPENREE 79 (103)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-HHHHHHHHHTSS----ECTCCCHHHHHHHHHHCTHHHHTT
T ss_pred hhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCHHHHHHHHhcccc--ccccHHHHHHHHHHHHHhCHHHHHH
Confidence 46899999999999999999999871 2333333444432110 011223577777777766643
Q ss_pred ---hhhcccccccccCHHHHHHH
Q 018217 86 ---DMTKFQDEVMALPLAGVEAI 105 (359)
Q Consensus 86 ---~v~~~~~eFl~L~~~~l~~l 105 (359)
++.+ .=.|..||.+.|.+.
T Consensus 80 ~~~~Ll~-~iR~~~l~~~~L~~~ 101 (103)
T PF07707_consen 80 HLKELLS-CIRFPLLSPEELQNV 101 (103)
T ss_dssp THHHHHC-CCHHHCT-HHHHHHC
T ss_pred HHHHHHH-hCCcccCCHHHHHHH
Confidence 3333 345555666665543
No 57
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=69.52 E-value=2.8 Score=41.15 Aligned_cols=93 Identities=18% Similarity=0.052 Sum_probs=67.2
Q ss_pred eeeeEeeCeEeeCCcchHHHHHHHhhccChhh---HHHHHHHHccCC--CCChhhHHHHHHhccccccccChHHHHHHHH
Q 018217 3 LLNFMYSNTLSTTAAPALLDVLMAADKFEVAS---CMRYCSRLLRNM--PMTPESALLYLELPSSVLMGEAVQPLTDAAR 77 (359)
Q Consensus 3 lL~y~YTg~i~i~~~~nV~~lL~aA~~lqv~~---l~~~C~~fL~~~--~l~~~Ncl~i~~~A~~~~~~~~~~~L~~~a~ 77 (359)
++.|+|+.+.+|-. +-..+++-.|+++.+.. |+.+-.--+.+. -++.-|.+.|+..+-.. ....|.+.|.
T Consensus 349 ~lr~lY~d~tdi~~-~~A~dvll~ad~lal~~dr~Lkt~as~~itq~~e~id~y~V~dIl~~~wd~----~~~rlEqfa~ 423 (516)
T KOG0511|consen 349 DLRNLYCDQTDIIF-DVASDVLLFADKLALADDRLLKTAASAEITQWLELIDMYGVLDILEYCWDL----VACRLEQFAE 423 (516)
T ss_pred HHHHhhcccccchH-HHHhhHHHHhhHhhhhhhhhhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHh----hhHHHHHHHH
Confidence 57899999999986 89999999999997762 333333333320 23444677777777644 6788999999
Q ss_pred HHHhcchhhhhcccccccccCHHH
Q 018217 78 QYLASRYKDMTKFQDEVMALPLAG 101 (359)
Q Consensus 78 ~fi~~nf~~v~~~~~eFl~L~~~~ 101 (359)
.|++.|...+.. .+++.++-...
T Consensus 424 ~~~a~hl~~l~~-dPe~~~~~~~s 446 (516)
T KOG0511|consen 424 THEARHLLLLLP-DPEGDSSLRTS 446 (516)
T ss_pred HHHHHHHHHhcC-CchhhHHHHhc
Confidence 999999999988 88886544333
No 58
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=66.60 E-value=1.1 Score=34.94 Aligned_cols=37 Identities=19% Similarity=0.414 Sum_probs=26.9
Q ss_pred eeeeEee-CeEeeCCcchHHHHHHHhhccChhhH-HHHH
Q 018217 3 LLNFMYS-NTLSTTAAPALLDVLMAADKFEVASC-MRYC 39 (359)
Q Consensus 3 lL~y~YT-g~i~i~~~~nV~~lL~aA~~lqv~~l-~~~C 39 (359)
||+|+.+ +++.......+..+++-|.+|+++.+ ++.|
T Consensus 56 IL~ylr~~~~l~~~~~~~~~~l~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 56 ILNYLRTGGKLPIPDEICLEELLEEAEFYGLDELFIEDC 94 (94)
T ss_dssp HHHHHHHTSSB---TTS-HHHHHHHHHHHT-HHHHBHHC
T ss_pred HHHHHhhcCccCCCCchhHHHHHHHHHHcCCCccccCCC
Confidence 6788888 77776532689999999999999999 7777
No 59
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=62.47 E-value=18 Score=36.81 Aligned_cols=45 Identities=11% Similarity=0.151 Sum_probs=38.0
Q ss_pred CCChhhHHHHHHhccccccccChHHHHHHHHHHHhcchhhhhcccccccccCH
Q 018217 47 PMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMALPL 99 (359)
Q Consensus 47 ~l~~~Ncl~i~~~A~~~~~~~~~~~L~~~a~~fi~~nf~~v~~~~~eFl~L~~ 99 (359)
.+.++||+.++.+|++| ..+.|.+.|.+||..|.... .+|+.|+.
T Consensus 184 ~~~~dtvi~tl~~AkKY----~VpaLer~CVkflr~~l~~~----naf~~L~q 228 (521)
T KOG2075|consen 184 KLAADTVITTLYAAKKY----LVPALERQCVKFLRKNLMAD----NAFLELFQ 228 (521)
T ss_pred hhhHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHhcCCh----HHHHHHHH
Confidence 68999999999999987 89999999999998876554 35777765
No 60
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=60.41 E-value=7.8 Score=36.62 Aligned_cols=81 Identities=16% Similarity=0.126 Sum_probs=60.1
Q ss_pred eeeeEeeCeEeeCCcchHH---HHHHHhhccChhhHHHHHHHHccCCCCChhhHHHHHHhccccccccChHHHHHHHHHH
Q 018217 3 LLNFMYSNTLSTTAAPALL---DVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQY 79 (359)
Q Consensus 3 lL~y~YTg~i~i~~~~nV~---~lL~aA~~lqv~~l~~~C~~fL~~~~l~~~Ncl~i~~~A~~~~~~~~~~~L~~~a~~f 79 (359)
+..|.|+..-.-.. +.+. .++.+|..++...++..|...+.+ .++..|...++..+..+ .+..+..++..+
T Consensus 155 ~~~F~~~~s~~~~~-~~~~~~~~~~a~~f~~~~~~lk~~~~~~l~~-~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~ 228 (297)
T KOG1987|consen 155 LNGFQVLPSQVSSV-ERIFEKHPDLAAAFKYKNRHLKLACMPVLLS-LIETLNVSQSLQEASNY----DLKEAKSALTYV 228 (297)
T ss_pred hceEEEeccchHHH-HHhhcCChhhhhccccccHHHHHHHHHHHHH-HHHhhhhcccHHHhchh----HHHHHHHHHHHH
Confidence 36788885444433 4554 889999999999999999999999 68777767777766543 667777777777
Q ss_pred Hhc--chhhhhc
Q 018217 80 LAS--RYKDMTK 89 (359)
Q Consensus 80 i~~--nf~~v~~ 89 (359)
+.. +...+.+
T Consensus 229 ~~~~~~ld~l~~ 240 (297)
T KOG1987|consen 229 IAAGFKLDWLEK 240 (297)
T ss_pred HhccchHhHHHH
Confidence 776 5555554
No 61
>PF13799 DUF4183: Domain of unknown function (DUF4183)
Probab=58.87 E-value=8.3 Score=29.81 Aligned_cols=44 Identities=30% Similarity=0.354 Sum_probs=26.6
Q ss_pred ceeEEeeCCcccccccCCCCCCceeeeCCC-------------ceeecceEEEEeeeee
Q 018217 312 KGNYTFTGGKAVGYRNLFAIPWTSFMADDS-------------LYFINGILHLRAELTI 357 (359)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~-------------~~~~~~~~~~~~~~~~ 357 (359)
+..|+.+.+- .-.+-+++|=++|.+|+- ++||||||.-..--||
T Consensus 5 r~fyt~~~~~--~~~~~~tI~a~~f~dD~g~~~t~~~~~~sY~NLyINGvLQ~~~~ytv 61 (84)
T PF13799_consen 5 RYFYTNTAEL--ALGGTTTIPAPSFTDDAGNAVTAFPAVNSYYNLYINGVLQPGSLYTV 61 (84)
T ss_pred EEEEEccccc--cccCceEeechhhccCCCCeeEeecccceEEEEEEEEEecCCcceEE
Confidence 3445554443 223445777777776643 6999999976554443
No 62
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=57.40 E-value=5.3 Score=36.60 Aligned_cols=39 Identities=21% Similarity=0.271 Sum_probs=33.5
Q ss_pred eeeeEeeCeEeeCCcchHHHHHHHhhccChhhHHHHHHH
Q 018217 3 LLNFMYSNTLSTTAAPALLDVLMAADKFEVASCMRYCSR 41 (359)
Q Consensus 3 lL~y~YTg~i~i~~~~nV~~lL~aA~~lqv~~l~~~C~~ 41 (359)
||+|+-.|++.....-++..+|+.|++|||-+++++-++
T Consensus 67 IlNyLr~Gq~~~~s~i~~lgvLeeArff~i~sL~~hle~ 105 (302)
T KOG1665|consen 67 ILNYLRDGQIPSLSDIDCLGVLEEARFFQILSLKDHLED 105 (302)
T ss_pred HHHHHhcCceeecCCccHHHHHHHhhHHhhHhHHhHHhh
Confidence 688999999876653589999999999999999988776
No 63
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.20 E-value=14 Score=36.26 Aligned_cols=38 Identities=18% Similarity=0.196 Sum_probs=30.9
Q ss_pred CeEEEeeCCCCceEecc----CCCcceEEEeeCC-cEEEeeeeeCCc
Q 018217 217 KVVEFERPRQQCVVYLD----LKREECENLFPSG-RVYSQAFHLGGQ 258 (359)
Q Consensus 217 ~~v~~ydp~~~~W~~m~----~~R~~~~v~v~~g-~iY~~~f~~gG~ 258 (359)
+.+..|||..|+|..|+ ..-.+++++.+++ .||+ +||.
T Consensus 113 nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f----~GGv 155 (381)
T COG3055 113 NDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYF----FGGV 155 (381)
T ss_pred eeeEEecCCCChhheeccccccccccceeEecCCceEEE----Eccc
Confidence 47889999999999943 3345788888988 9998 8885
No 64
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=54.22 E-value=23 Score=36.46 Aligned_cols=38 Identities=13% Similarity=-0.042 Sum_probs=31.3
Q ss_pred eEEEeeCCCCceEe------ccCCCcceEEEeeCCcEEEeeeeeCCcc
Q 018217 218 VVEFERPRQQCVVY------LDLKREECENLFPSGRVYSQAFHLGGQG 259 (359)
Q Consensus 218 ~v~~ydp~~~~W~~------m~~~R~~~~v~v~~g~iY~~~f~~gG~~ 259 (359)
..-.-|..+-.|.. -|.||+-|++.+++++.|+ +||.-
T Consensus 231 DLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyv----fGGWV 274 (830)
T KOG4152|consen 231 DLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIGNKMYV----FGGWV 274 (830)
T ss_pred ceeEEecceeecccccccCCCCCCcccccceeecceeEE----eccee
Confidence 34445788888987 5789999999999999998 88863
No 65
>PF11512 Atu4866: Agrobacterium tumefaciens protein Atu4866; InterPro: IPR020955 The function of the proteins in this entry is not known, though Atu4866 from Agrobacterium tumefaciens has been structurally characterised. Atu4866 adopts a streptavidin-like fold and has a beta-barrel/sandwich which is formed by eight antiparallel beta-strands []. Atu4866 has a potential ligand-binding site where it has a stretch of conserved residues on the surface. ; PDB: 2JMB_A.
Probab=51.93 E-value=15 Score=27.75 Aligned_cols=39 Identities=38% Similarity=0.653 Sum_probs=23.1
Q ss_pred cccccccceeEEeeCCcccccccCCCCCCceeeeCCCceeecceEEE
Q 018217 305 EEFVSKYKGNYTFTGGKAVGYRNLFAIPWTSFMADDSLYFINGILHL 351 (359)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 351 (359)
|.--+-+.|.|.++|+ -..|.|= +.|.|+.. |+||+||-
T Consensus 32 g~r~~AyqG~Y~v~G~-~I~Y~DD-----tGFtA~G~--f~dg~L~H 70 (78)
T PF11512_consen 32 GGRESAYQGRYEVTGD-HIDYWDD-----TGFTADGE--FRDGVLHH 70 (78)
T ss_dssp TTEEEEEEEEEEEETT-EEEEB-T-----TS-B--EE----SSEEEE
T ss_pred cCccccceEEEEEECC-EEEEEec-----CCceeeee--EECCEEEe
Confidence 3334556899999998 4555443 56777765 88999984
No 66
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=51.25 E-value=7.8 Score=32.36 Aligned_cols=28 Identities=18% Similarity=0.408 Sum_probs=25.8
Q ss_pred chHHHHHHHhhccChhhHHHHHHHHccC
Q 018217 18 PALLDVLMAADKFEVASCMRYCSRLLRN 45 (359)
Q Consensus 18 ~nV~~lL~aA~~lqv~~l~~~C~~fL~~ 45 (359)
+.+.++.-||+||.++.|.++||+-+.+
T Consensus 93 emL~eI~laaNYL~ikpLLd~gCKivae 120 (158)
T COG5201 93 EMLLEICLAANYLEIKPLLDLGCKIVAE 120 (158)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHHH
Confidence 6789999999999999999999998776
No 67
>COG4025 Predicted membrane protein [Function unknown]
Probab=50.75 E-value=13 Score=34.15 Aligned_cols=37 Identities=24% Similarity=0.303 Sum_probs=29.9
Q ss_pred ceeeeeEEeeeccCceeeEEEeeeeeccCcccccccccc
Q 018217 274 FHCFGLFLGMQEKGSVSFAVDYEFAARSKPTEEFVSKYK 312 (359)
Q Consensus 274 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (359)
.-+||+++-++|+ ...+.|++|+||.++| |.|..-..
T Consensus 213 dyTfGiV~EV~E~-~v~V~V~~DIaaNvkP-g~YiVe~n 249 (284)
T COG4025 213 DYTFGIVEEVKED-LVEVFVHDDIAANVKP-GYYIVEGN 249 (284)
T ss_pred cceeEEEEEEcCC-eEEEEEccchhhcCCC-CeEEecCc
Confidence 4579999988888 6779999999999885 77775444
No 68
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=46.86 E-value=1.1e+02 Score=23.05 Aligned_cols=24 Identities=8% Similarity=0.174 Sum_probs=21.5
Q ss_pred HHHHHhhccChhhHHHHHHHHccC
Q 018217 22 DVLMAADKFEVASCMRYCSRLLRN 45 (359)
Q Consensus 22 ~lL~aA~~lqv~~l~~~C~~fL~~ 45 (359)
+++..|+.++.+.+.+.|.+|+.+
T Consensus 3 ~i~~~a~~~~~~~L~~~~~~~i~~ 26 (101)
T smart00875 3 GIRRFAELYGLEELLEKALRFILK 26 (101)
T ss_pred hHHHHHHHhChHHHHHHHHHHHHH
Confidence 577889999999999999999877
No 69
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=45.36 E-value=9.7 Score=35.91 Aligned_cols=37 Identities=19% Similarity=0.257 Sum_probs=28.0
Q ss_pred HHHHHHHhhccChhhHHHHHHHHccCCCCChhhHHHHH
Q 018217 20 LLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYL 57 (359)
Q Consensus 20 V~~lL~aA~~lqv~~l~~~C~~fL~~~~l~~~Ncl~i~ 57 (359)
..++++.|-+|.+.-|.++|.+-+.. ....+|..+++
T Consensus 361 AleL~~IAlFfEfemLaQa~e~Vir~-acaadlsn~cL 397 (401)
T KOG2838|consen 361 ALELIEIALFFEFEMLAQACEDVIRK-ACAADLSNGCL 397 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhcccccc
Confidence 36677788888888888888888888 67776655544
No 70
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=44.52 E-value=25 Score=36.24 Aligned_cols=47 Identities=9% Similarity=0.057 Sum_probs=37.4
Q ss_pred eEEEEec--C---CCeEEEeeCCCCceEe------ccCCCcceEEEeeCCcEEEeeeeeCCc
Q 018217 208 ERAYKYR--P---VKVVEFERPRQQCVVY------LDLKREECENLFPSGRVYSQAFHLGGQ 258 (359)
Q Consensus 208 ~~i~v~~--~---~~~v~~ydp~~~~W~~------m~~~R~~~~v~v~~g~iY~~~f~~gG~ 258 (359)
|.|++.+ . ....+.|+..+|+|.. +|.+-.-|+.+..+.+||+ +||.
T Consensus 43 ELiviFGGGNEGiiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtrilv----FGGM 100 (830)
T KOG4152|consen 43 ELIVIFGGGNEGIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRILV----FGGM 100 (830)
T ss_pred eeEEEecCCcccchhhhhhhccccceeecchhcCCCCCchhhcceEecCceEEE----EccE
Confidence 5566522 2 3578899999999987 7777788899889999998 8895
No 71
>PF07713 DUF1604: Protein of unknown function (DUF1604); InterPro: IPR011666 This domain is found at the N terminus of several eukaryotic RNA processing proteins (e.g Q8N3B7 from SWISSPROT).
Probab=42.74 E-value=9.3 Score=29.56 Aligned_cols=14 Identities=50% Similarity=0.833 Sum_probs=11.8
Q ss_pred EeeCCcccccccCC
Q 018217 316 TFTGGKAVGYRNLF 329 (359)
Q Consensus 316 ~~~~~~~~~~~~~~ 329 (359)
+||||.|.||+|--
T Consensus 23 AFtGGfSAGyfNTV 36 (87)
T PF07713_consen 23 AFTGGFSAGYFNTV 36 (87)
T ss_pred cccCCcccceeecc
Confidence 78999999998854
No 72
>smart00061 MATH meprin and TRAF homology.
Probab=37.54 E-value=1.2e+02 Score=22.45 Aligned_cols=75 Identities=12% Similarity=0.130 Sum_probs=40.3
Q ss_pred eCCcEEEeeeeeCCcccccccccccCCCCCceeeeeEEeeeccCce----eeEEEeeeeeccCcccccccccceeEEeeC
Q 018217 244 PSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSV----SFAVDYEFAARSKPTEEFVSKYKGNYTFTG 319 (359)
Q Consensus 244 ~~g~iY~~~f~~gG~~~~l~~~c~~~~~~~~~~~~~~~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (359)
.+..+++..|.+||..-.+....+ ..-.+++|.+.+.... ++..++.+.--.+..... ..+..++|..
T Consensus 14 ~~~~~~S~~f~~~g~~W~i~~~p~------~~~lsl~L~~~~~~~~~~~w~v~a~~~~~l~~~~~~~~--~~~~~~~F~~ 85 (95)
T smart00061 14 EGESYFSPSEEHFNIPWRLKIYRK------NGFLSLYLHCEKEECDSRKWSIEAEFTLKLVSQNGKSL--SKKDKHVFEK 85 (95)
T ss_pred cCceEeCChhEEcCceeEEEEEEc------CCEEEEEEEeCCCcCCCCCeEEEEEEEEEEEeCCCCEE--eeeeeEEEcC
Confidence 356678888888997665555442 1225667765443322 355556654433321222 2345677775
Q ss_pred Ccccccc
Q 018217 320 GKAVGYR 326 (359)
Q Consensus 320 ~~~~~~~ 326 (359)
+.+.|+.
T Consensus 86 ~~~~G~~ 92 (95)
T smart00061 86 PSGWGFS 92 (95)
T ss_pred CCcccee
Confidence 4445543
No 73
>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp
Probab=35.64 E-value=1.1e+02 Score=25.59 Aligned_cols=25 Identities=16% Similarity=0.263 Sum_probs=19.9
Q ss_pred CCceeee----CCCceeecceEEEEeeee
Q 018217 332 PWTSFMA----DDSLYFINGILHLRAELT 356 (359)
Q Consensus 332 ~w~~~~~----~~~~~~~~~~~~~~~~~~ 356 (359)
-|..||. +.+.|..||-|.+|.+++
T Consensus 119 G~~~fi~~~~Le~~~yl~dD~l~I~c~V~ 147 (147)
T cd03776 119 GYVEFAHIEDLLQRGFVKNDTLLIKIEVN 147 (147)
T ss_pred eEceeeEHHHhhhCCCccCCEEEEEEEEC
Confidence 4677776 456788899999999875
No 74
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=34.46 E-value=32 Score=26.69 Aligned_cols=30 Identities=23% Similarity=0.369 Sum_probs=27.0
Q ss_pred hhhHHHHHHhccccccccChHHHHHHHHHHHhcc
Q 018217 50 PESALLYLELPSSVLMGEAVQPLTDAARQYLASR 83 (359)
Q Consensus 50 ~~Ncl~i~~~A~~~~~~~~~~~L~~~a~~fi~~n 83 (359)
.+++.+++.+|+.+ .++.|.+.|.+++.+|
T Consensus 81 ~~~~~~ll~lA~~~----~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 81 DENVEELLELADKL----QIPELKKACEKFLQES 110 (111)
T ss_dssp TTTHHHHHHHHHHT----TBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh----CcHHHHHHHHHHHHhC
Confidence 78999999999876 9999999999999765
No 75
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=32.54 E-value=59 Score=30.29 Aligned_cols=41 Identities=20% Similarity=0.102 Sum_probs=32.4
Q ss_pred CCCeEEEeeCCC----CceEe----ccCCCcceEEEee-CCcEEEeeeeeCCcc
Q 018217 215 PVKVVEFERPRQ----QCVVY----LDLKREECENLFP-SGRVYSQAFHLGGQG 259 (359)
Q Consensus 215 ~~~~v~~ydp~~----~~W~~----m~~~R~~~~v~v~-~g~iY~~~f~~gG~~ 259 (359)
+.+.+..|+|.. ..|.+ |..+|..-++..+ ||.|.+ +||..
T Consensus 89 G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlI----vGG~~ 138 (243)
T PF07250_consen 89 GNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLI----VGGSN 138 (243)
T ss_pred cccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEE----EeCcC
Confidence 356788999987 67987 8889998876664 899988 88864
No 76
>COG3002 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.52 E-value=29 Score=36.59 Aligned_cols=60 Identities=20% Similarity=0.204 Sum_probs=43.6
Q ss_pred eEEEeeeeeccCcccccccccceeEEeeCCcc---cccccCC-CCCCceeeeCCCceeecceEEEEeeeeee
Q 018217 291 FAVDYEFAARSKPTEEFVSKYKGNYTFTGGKA---VGYRNLF-AIPWTSFMADDSLYFINGILHLRAELTIR 358 (359)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (359)
+.|.|. +.|...--|-+.+|-.|+++||.+ -+|.||. +.+|.+.++.+.+ +|--+-|||+
T Consensus 760 INmqYy--aSTvdn~~yGSGnKa~hnVvgg~GvmqGn~sdlr~GL~~qsv~a~~~~------~H~p~RL~vv 823 (880)
T COG3002 760 INMQYY--ASTVDNHRYGSGNKATHNVVGGIGVMQGNGSDLRCGLALQSVHAGQGW------RHEPLRLTVV 823 (880)
T ss_pred hhhhhh--eeccccccccCCchhhheeecceeEEeccccchhccchHHHHHhccCc------cccceeEEEE
Confidence 455554 455556789999999999999985 3566776 5999999987754 4666666664
No 77
>PF09874 DUF2101: Predicted membrane protein (DUF2101); InterPro: IPR018663 This family of conserved hypothetical proteins has no known function.
Probab=27.18 E-value=54 Score=29.52 Aligned_cols=36 Identities=22% Similarity=0.241 Sum_probs=27.4
Q ss_pred ceeeeeEEeeeccCceeeEEEeeeeeccCccccccccc
Q 018217 274 FHCFGLFLGMQEKGSVSFAVDYEFAARSKPTEEFVSKY 311 (359)
Q Consensus 274 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (359)
.-+||.+.-++++ .+-+.|++|+||..+| |.|..-.
T Consensus 143 dyTyG~VeEv~~~-~v~V~V~dDI~ANVkP-g~YwV~~ 178 (206)
T PF09874_consen 143 DYTYGVVEEVKEN-LVRVFVHDDIAANVKP-GYYWVEA 178 (206)
T ss_pred cceeEEEEEecCC-EEEEEEccchhhcCCC-CeEEecC
Confidence 3569999878777 5679999999999885 6665443
No 78
>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter
Probab=23.66 E-value=4.2e+02 Score=21.82 Aligned_cols=24 Identities=17% Similarity=0.455 Sum_probs=16.9
Q ss_pred CCceeee----CCCceeecceEEEEeee
Q 018217 332 PWTSFMA----DDSLYFINGILHLRAEL 355 (359)
Q Consensus 332 ~w~~~~~----~~~~~~~~~~~~~~~~~ 355 (359)
-|..|+. .++.|..||.|-+|+++
T Consensus 121 G~~~fi~~~~L~~~gfl~dD~l~I~~~v 148 (149)
T cd00270 121 GYPEFVPLEKLESRGYVKDDTLFIKVEV 148 (149)
T ss_pred CcceEeEHHHhccCCCEeCCEEEEEEEE
Confidence 3555555 34568889999998876
No 79
>PF08766 DEK_C: DEK C terminal domain; InterPro: IPR014876 DEK is a chromatin associated protein that is linked with cancers and autoimmune disease. This domain is found at the C-terminal of DEK and is of clinical importance since it can reverse the characteristic abnormal DNA-mutagen sensitivity in fibroblasts from ataxia-telangiectasia (A-T) patients []. The structure of this domain shows it to be homologous to the E2F/DP transcription factor family []. This domain is also found in chitin synthase proteins like Q8TF96 from SWISSPROT, and in protein phosphatases such as Q6NN85 from SWISSPROT. ; PDB: 1Q1V_A.
Probab=21.09 E-value=2.2e+02 Score=19.54 Aligned_cols=39 Identities=15% Similarity=0.305 Sum_probs=23.9
Q ss_pred HHHHHHhcCCCcccCChHHHHHHHHHhhhhcCCChHHHHHHH
Q 018217 100 AGVEAILSSDDLQIASEDAVYDFVLKWARAQYPRVEERREVL 141 (359)
Q Consensus 100 ~~l~~lL~sd~L~V~sE~~Vf~avl~Wv~~d~~~~~~R~~~l 141 (359)
..+..+|...+|..-+.-.|-+++-.....| ...|+.++
T Consensus 7 ~~i~~iL~~~dl~~vT~k~vr~~Le~~~~~d---L~~~K~~I 45 (54)
T PF08766_consen 7 EAIREILREADLDTVTKKQVREQLEERFGVD---LSSRKKFI 45 (54)
T ss_dssp HHHHHHHTTS-GGG--HHHHHHHHHHH-SS-----SHHHHHH
T ss_pred HHHHHHHHhCCHhHhhHHHHHHHHHHHHCCC---cHHHHHHH
Confidence 3466777777777667778888877777766 66666666
Done!