BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018218
(359 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q94CC0|Y5994_ARATH Uncharacterized protein At5g49945 OS=Arabidopsis thaliana
GN=At5g49945 PE=1 SV=1
Length = 480
Score = 487 bits (1253), Expect = e-137, Method: Compositional matrix adjust.
Identities = 240/327 (73%), Positives = 289/327 (88%), Gaps = 3/327 (0%)
Query: 33 LSALRFLIMFVINYFTGKRENENLALAWAAKFATKDSIFEKNFSLLGVGEGDDSPLLLKE 92
++ + FLI INYF GKRENE+LALAWAAKFA+KD+IF+KNFS+LGV E +DSPLLLKE
Sbjct: 157 IACVCFLIALAINYFVGKRENESLALAWAAKFASKDTIFQKNFSMLGVSELEDSPLLLKE 216
Query: 93 GQNVFKFYASGRRYCSGLLATMELKSRHDLISRFYNMIVPCKDEISFEVYMNDEAMDHVV 152
NVFKFYASGRRYC GLLATMELKSRHDLISR +N++VPCKDEI+FEVYMN+E MDHVV
Sbjct: 217 ALNVFKFYASGRRYCHGLLATMELKSRHDLISRVFNLVVPCKDEITFEVYMNEETMDHVV 276
Query: 153 FAVAKKKVAKAMQKEVRDLNRFTGGLMAAPSGGGKKWVADELGVVSESKEVAGDLITDAV 212
FA+ KKK AK MQKE+RDL RF G+++ P G+KWV++E ++SESKEVA DLITD V
Sbjct: 277 FAMTKKKAAKTMQKEMRDLQRF-AGIVSPP--AGRKWVSEEFALISESKEVAADLITDTV 333
Query: 213 LEQVFGEKAFEKHGKDFISMHFSDQHPGTHRKMLLFKFALPDANNMADMTRLVALVPYYI 272
L+QVFG+KA +K+GK+F+SMH SDQHPG H+KM+LFKF+LPDA +M D+ RLVAL+PYYI
Sbjct: 334 LDQVFGDKAVDKYGKNFMSMHISDQHPGKHKKMMLFKFSLPDAKHMDDIVRLVALIPYYI 393
Query: 273 DLIGRYKLSPQARSKTEAARQKAAQEAYKELQNARQEALQRKKADRKKMIEEADAKLSAE 332
DL+GRY+LS QAR+KTE+ RQKAA+EAYKEL NARQEALQ+KKA++KKM+EEA+AK+SAE
Sbjct: 394 DLVGRYRLSSQARNKTESGRQKAAEEAYKELHNARQEALQKKKAEKKKMMEEAEAKMSAE 453
Query: 333 AIRKKEAKERARQMKKAVPKMKMTRGH 359
IRKKEAKERARQ+KKAVPKMKM+R H
Sbjct: 454 VIRKKEAKERARQVKKAVPKMKMSRSH 480
>sp|Q66I12|CCD47_DANRE Coiled-coil domain-containing protein 47 OS=Danio rerio GN=ccdc47
PE=2 SV=1
Length = 486
Score = 149 bits (375), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 102/334 (30%), Positives = 161/334 (48%), Gaps = 43/334 (12%)
Query: 39 LIMFVINYFTGKRENENLALAWAAKFATKDSIFEKNFSLLGVG----EGDDSPLLLKEGQ 94
L+ +++NY GK +N LA AW F + + E NF+L+G E + L +E +
Sbjct: 149 LLAYIMNYIIGKNKNSRLAQAW---FNSHRELLESNFALVGDDGTSKEATSTGKLNQENE 205
Query: 95 NVFKFYASGRRYCSGLLATMELKSRHDLISRFYNMIVPCKDEISFEVYMNDEAMDHVVFA 154
+++ + SGR C G+L ++ R DL++ M+ P D++ V +NDE MD VFA
Sbjct: 206 HIYNLWCSGRVCCEGMLIQLKFLKRQDLLNVLARMMRPTCDQVQVRVTLNDEDMDTFVFA 265
Query: 155 VAKKKVAKAMQKEVRDLNRFTGGLMAAPSGGGKKWVADELGVVSESKEVAGDLITDAVLE 214
V +K MQKE++DL+ F G P G K + D L ++SE EV TD V++
Sbjct: 266 VGSRKAMARMQKEMQDLSEFCGD---KPKSGAKYGIPDSLTILSEMGEV-----TDGVMD 317
Query: 215 QVFGEKAFEKHGKDFISMHFSDQHPG--------------THRKMLLFKFALPDANNMA- 259
H S+HFSDQ G +K LLF F +P N +
Sbjct: 318 NKMV-HYLTSHADKIESIHFSDQFSGPKVMQEEGQPLKLPETKKTLLFTFNVPGMGNTSP 376
Query: 260 -DMTRLVAL---VPYYIDLIGRYKLSPQARSKTEAARQKAAQEAYKELQNARQEALQRKK 315
DM L+ L V Y ID + + +L+ + + K + R + + K+ RQEA Q ++
Sbjct: 377 KDMDSLLPLMNMVIYSIDKVKKLRLNREGKQKADRNRARVEENFLKQTHAQRQEAAQTRR 436
Query: 316 ADRKKMIEEADAKLSAEAIRKKEAKERARQMKKA 349
++K+ E I +E ER R++++A
Sbjct: 437 EEKKRA--------EKERIMNEEDPERQRRLEEA 462
>sp|Q3ZC50|CCD47_BOVIN Coiled-coil domain-containing protein 47 OS=Bos taurus GN=CCDC47
PE=2 SV=1
Length = 483
Score = 143 bits (361), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 100/335 (29%), Positives = 164/335 (48%), Gaps = 46/335 (13%)
Query: 39 LIMFVINYFTGKRENENLALAWAAKFATKDSIFEKNFSLLGVG----EGDDSPLLLKEGQ 94
L+ +++NY GK +N LA AW F T + E NF+L+G E + L +E +
Sbjct: 146 LLAYIMNYIIGKNKNSRLAQAW---FNTHRELLESNFTLVGDDGTNKEATSTGKLNQENE 202
Query: 95 NVFKFYASGRRYCSGLLATMELKSRHDLISRFYNMIVPCKDEISFEVYMNDEAMDHVVFA 154
+++ + SGR C G+L + R DL++ M+ P D++ +V MNDE MD VFA
Sbjct: 203 HIYNLWCSGRVCCEGMLIQLRFLKRQDLLNVLARMMRPVSDQVQIKVTMNDEDMDTYVFA 262
Query: 155 VAKKKVAKAMQKEVRDLNRFTGGLMAAPSGGGKKWVADELGVVSESKEVAGDLITDAVLE 214
V +K +QKE++DL+ F P G K + D L ++SE EV ++ +L
Sbjct: 263 VGARKALVRLQKEMQDLSEFCSD---KPKSGAKYGLPDSLAILSEMGEVTDGMMDTKMLH 319
Query: 215 QVFGEKAFEKHGKDFI-SMHFSDQHPG--------------THRKMLLFKFALPDANN-- 257
F H D I S+HFSDQ G ++ LLF F +P + N
Sbjct: 320 -------FLTHYADKIESIHFSDQFSGPKIMQEEGQPLKLPDTKRTLLFTFNVPGSGNTY 372
Query: 258 ---MADMTRLVALVPYYIDLIGRYKLSPQARSKTEAARQKAAQEAYKELQNARQEALQ-- 312
M + L+ +V Y ID +++L+ + + K + R + + K RQEA Q
Sbjct: 373 PKDMEALLPLMNMVIYSIDKAKKFRLNREGKQKADKNRARVEENFLKLTHVQRQEAAQSR 432
Query: 313 ---RKKADRKKMIEEADA----KLSAEAIRKKEAK 340
+K+A++++++ E D +L A+R+++ K
Sbjct: 433 REEKKRAEKERIMNEEDPEKQRRLEEAALRREQKK 467
>sp|P0C204|CCD47_MACFA Coiled-coil domain-containing protein 47 OS=Macaca fascicularis
GN=CCDC47 PE=2 SV=1
Length = 483
Score = 143 bits (360), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 99/335 (29%), Positives = 164/335 (48%), Gaps = 46/335 (13%)
Query: 39 LIMFVINYFTGKRENENLALAWAAKFATKDSIFEKNFSLLGVG----EGDDSPLLLKEGQ 94
L+ +++NY GK +N LA AW F T + E NF+L+G E + L +E +
Sbjct: 146 LLAYIMNYIIGKNKNSRLAQAW---FNTHRELLESNFTLVGDDGTNKEATSTGKLNQENE 202
Query: 95 NVFKFYASGRRYCSGLLATMELKSRHDLISRFYNMIVPCKDEISFEVYMNDEAMDHVVFA 154
+++ + SGR C G+L + R DL++ M+ P D++ +V MNDE MD VFA
Sbjct: 203 HIYNLWCSGRVCCEGMLIQLRFLKRQDLLNVLARMMRPVSDQVQIKVTMNDEDMDTYVFA 262
Query: 155 VAKKKVAKAMQKEVRDLNRFTGGLMAAPSGGGKKWVADELGVVSESKEVAGDLITDAVLE 214
V +K +QKE++DL+ F P G K + D L ++SE EV ++ ++
Sbjct: 263 VGTRKALVRLQKEMQDLSEFCSD---KPKSGAKYGLPDSLAILSEMGEVTDGMMDTKMVH 319
Query: 215 QVFGEKAFEKHGKDFI-SMHFSDQHPG--------------THRKMLLFKFALPDANN-- 257
F H D I S+HFSDQ G ++ LLF F +P + N
Sbjct: 320 -------FLTHYADKIESVHFSDQSSGPKIMQEEGQPLKLPDTKRTLLFTFNVPGSGNTY 372
Query: 258 ---MADMTRLVALVPYYIDLIGRYKLSPQARSKTEAARQKAAQEAYKELQNARQEALQ-- 312
M + L+ +V Y ID +++L+ + + K + R + + K RQEA Q
Sbjct: 373 PKDMEALLPLMNMVIYSIDKAKKFRLNREGKQKADKNRARVEENFLKLTHVQRQEAAQSR 432
Query: 313 ---RKKADRKKMIEEADA----KLSAEAIRKKEAK 340
+K+A++++++ E D +L A+R+++ K
Sbjct: 433 REEKKRAEKERIMNEEDPEKQRRLEEAALRREQKK 467
>sp|Q96A33|CCD47_HUMAN Coiled-coil domain-containing protein 47 OS=Homo sapiens GN=CCDC47
PE=1 SV=1
Length = 483
Score = 142 bits (358), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 99/335 (29%), Positives = 164/335 (48%), Gaps = 46/335 (13%)
Query: 39 LIMFVINYFTGKRENENLALAWAAKFATKDSIFEKNFSLLGVG----EGDDSPLLLKEGQ 94
L+ +++NY GK +N LA AW F T + E NF+L+G E + L +E +
Sbjct: 146 LLAYIMNYIIGKNKNSRLAQAW---FNTHRELLESNFTLVGDDGTNKEATSTGKLNQENE 202
Query: 95 NVFKFYASGRRYCSGLLATMELKSRHDLISRFYNMIVPCKDEISFEVYMNDEAMDHVVFA 154
+++ + SGR C G+L + R DL++ M+ P D++ +V MNDE MD VFA
Sbjct: 203 HIYNLWCSGRVCCEGMLIQLRFLKRQDLLNVLARMMRPVSDQVQIKVTMNDEDMDTYVFA 262
Query: 155 VAKKKVAKAMQKEVRDLNRFTGGLMAAPSGGGKKWVADELGVVSESKEVAGDLITDAVLE 214
V +K +QKE++DL+ F P G K + D L ++SE EV ++ ++
Sbjct: 263 VGTRKALVRLQKEMQDLSEFCSD---KPKSGAKYGLPDSLAILSEMGEVTDGMMDTKMVH 319
Query: 215 QVFGEKAFEKHGKDFI-SMHFSDQHPG--------------THRKMLLFKFALPDANN-- 257
F H D I S+HFSDQ G ++ LLF F +P + N
Sbjct: 320 -------FLTHYADKIESVHFSDQFSGPKIMQEEGQPLKLPDTKRTLLFTFNVPGSGNTY 372
Query: 258 ---MADMTRLVALVPYYIDLIGRYKLSPQARSKTEAARQKAAQEAYKELQNARQEALQ-- 312
M + L+ +V Y ID +++L+ + + K + R + + K RQEA Q
Sbjct: 373 PKDMEALLPLMNMVIYSIDKAKKFRLNREGKQKADKNRARVEENFLKLTHVQRQEAAQSR 432
Query: 313 ---RKKADRKKMIEEADA----KLSAEAIRKKEAK 340
+K+A++++++ E D +L A+R+++ K
Sbjct: 433 REEKKRAEKERIMNEEDPEKQRRLEEAALRREQKK 467
>sp|Q9D024|CCD47_MOUSE Coiled-coil domain-containing protein 47 OS=Mus musculus GN=Ccdc47
PE=2 SV=2
Length = 483
Score = 140 bits (354), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 164/335 (48%), Gaps = 46/335 (13%)
Query: 39 LIMFVINYFTGKRENENLALAWAAKFATKDSIFEKNFSLLGVG----EGDDSPLLLKEGQ 94
L+ +++NY GK +N LA AW F + + E NF+L+G E + L +E +
Sbjct: 146 LLAYIMNYIIGKNKNSRLAQAW---FNSHRELLESNFTLVGDDGTNKEATSTGKLNQENE 202
Query: 95 NVFKFYASGRRYCSGLLATMELKSRHDLISRFYNMIVPCKDEISFEVYMNDEAMDHVVFA 154
+++ + SGR C G+L + R DL++ M+ P D++ +V MNDE MD VFA
Sbjct: 203 HIYNLWCSGRVCCEGMLIQLRFLKRQDLLNVLARMMRPVSDQVQIKVTMNDEDMDTYVFA 262
Query: 155 VAKKKVAKAMQKEVRDLNRFTGGLMAAPSGGGKKWVADELGVVSESKEVAGDLITDAVLE 214
V +K +QKE++DL+ F P G K + D L ++SE EV ++ ++
Sbjct: 263 VGTRKALLRLQKEMQDLSEFCSD---KPKSGAKYGLPDSLAILSEMGEVTEGMMDTKMVH 319
Query: 215 QVFGEKAFEKHGKDFI-SMHFSDQHPG--------------THRKMLLFKFALPDANN-- 257
F H D I S+HFSDQ G ++ LLF F +P + N
Sbjct: 320 -------FLTHYADKIESVHFSDQFSGPKIMQEEGQPLKLPDTKRTLLFTFNVPGSGNTY 372
Query: 258 ---MADMTRLVALVPYYIDLIGRYKLSPQARSKTEAARQKAAQEAYKELQNARQEALQ-- 312
M + L+ +V Y ID +++L+ + + K + R + + K RQEA Q
Sbjct: 373 PKDMESLLPLMNMVIYSIDKAKKFRLNREGKQKADKNRARVEENFLKLTHVQRQEAAQSR 432
Query: 313 ---RKKADRKKMIEEADA----KLSAEAIRKKEAK 340
+K+A++++++ E D +L A+R+++ K
Sbjct: 433 REEKKRAEKERIMNEEDPEKQRRLEEAALRREQKK 467
>sp|Q5U2X6|CCD47_RAT Coiled-coil domain-containing protein 47 OS=Rattus norvegicus
GN=Ccdc47 PE=2 SV=1
Length = 483
Score = 140 bits (352), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 164/335 (48%), Gaps = 46/335 (13%)
Query: 39 LIMFVINYFTGKRENENLALAWAAKFATKDSIFEKNFSLLGVG----EGDDSPLLLKEGQ 94
L+ +++NY GK +N LA AW F + + E NF+L+G E + L +E +
Sbjct: 146 LLAYIMNYIIGKNKNSRLAQAW---FNSHRELLESNFTLVGDDGTNKEATSTGKLNQENE 202
Query: 95 NVFKFYASGRRYCSGLLATMELKSRHDLISRFYNMIVPCKDEISFEVYMNDEAMDHVVFA 154
+++ + SGR C G+L + R DL++ M+ P D++ +V MNDE MD VFA
Sbjct: 203 HIYNLWCSGRVCCEGMLIQLRFLKRQDLLNVLARMMRPVSDQVQIKVTMNDEDMDTYVFA 262
Query: 155 VAKKKVAKAMQKEVRDLNRFTGGLMAAPSGGGKKWVADELGVVSESKEVAGDLITDAVLE 214
V +K +QKE++DL+ F P G K + D L ++SE EV ++ ++
Sbjct: 263 VGTRKALLRLQKEMQDLSEFCSD---KPKSGAKYGLPDSLAILSEMGEVTEGMMDTKMVH 319
Query: 215 QVFGEKAFEKHGKDFI-SMHFSDQHPG--------------THRKMLLFKFALPDANN-- 257
F H D I S+HFSDQ G ++ LLF F +P + N
Sbjct: 320 -------FLTHYADKIESVHFSDQFSGPKIMQEEGQPLKLPDTKRTLLFTFNVPGSGNTY 372
Query: 258 ---MADMTRLVALVPYYIDLIGRYKLSPQARSKTEAARQKAAQEAYKELQNARQEALQ-- 312
M + L+ +V Y ID +++L+ + + K + R + + K RQEA Q
Sbjct: 373 PKDMEALLPLMNMVIYSIDKAKKFRLNREGKQKADKNRARVEENFLKLTHVQRQEAAQSR 432
Query: 313 ---RKKADRKKMIEEADA----KLSAEAIRKKEAK 340
+K+A++++++ E D +L A+R+++ K
Sbjct: 433 REEKKRAEKERIMNEEDPEKQRRLEEAALRREQKK 467
>sp|Q5RCI4|CCD47_PONAB Coiled-coil domain-containing protein 47 OS=Pongo abelii GN=CCDC47
PE=2 SV=2
Length = 483
Score = 139 bits (351), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 163/335 (48%), Gaps = 46/335 (13%)
Query: 39 LIMFVINYFTGKRENENLALAWAAKFATKDSIFEKNFSLLGVG----EGDDSPLLLKEGQ 94
L+ +++NY GK +N LA AW F T + E NF+L+G E + L +E +
Sbjct: 146 LLAYIMNYIIGKNKNSRLAQAW---FNTHRELLESNFTLVGDDGTNKEATSTGKLNQENE 202
Query: 95 NVFKFYASGRRYCSGLLATMELKSRHDLISRFYNMIVPCKDEISFEVYMNDEAMDHVVFA 154
+++ + SGR C G+L + R DL++ M+ P D++ +V MNDE M+ VFA
Sbjct: 203 HIYNLWCSGRVCCEGMLIQLRFLKRQDLLNVLARMMRPVSDQVQIKVTMNDEDMETYVFA 262
Query: 155 VAKKKVAKAMQKEVRDLNRFTGGLMAAPSGGGKKWVADELGVVSESKEVAGDLITDAVLE 214
V +K +QKE++DL+ F P G K + D L ++SE EV ++ ++
Sbjct: 263 VGTRKALVRLQKEMQDLSEFCSD---KPKSGAKYGLPDSLAILSEMGEVTDGMMDTKMVH 319
Query: 215 QVFGEKAFEKHGKDFI-SMHFSDQHPG--------------THRKMLLFKFALPDANN-- 257
F H D I S+HFSDQ G ++ LLF F +P + N
Sbjct: 320 -------FLTHYADKIESVHFSDQFSGPKIMQEEGQPLKLPDTKRTLLFTFNVPGSGNTY 372
Query: 258 ---MADMTRLVALVPYYIDLIGRYKLSPQARSKTEAARQKAAQEAYKELQNARQEALQ-- 312
M + L+ +V Y ID +++L+ + + K + R + + K RQEA Q
Sbjct: 373 PKDMEALLPLMNMVIYSIDKAKKFRLNREGKQKADKNRARVEENFLKLTHVQRQEAAQSR 432
Query: 313 ---RKKADRKKMIEEADA----KLSAEAIRKKEAK 340
+K+A++++++ E D +L A+R+ + K
Sbjct: 433 REEKKRAEKERIMNEEDPEKQRRLEEAALRRDQKK 467
>sp|Q6AZI2|CCD47_XENLA Coiled-coil domain-containing protein 47 OS=Xenopus laevis
GN=ccdc47 PE=2 SV=1
Length = 489
Score = 137 bits (346), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 100/337 (29%), Positives = 167/337 (49%), Gaps = 43/337 (12%)
Query: 39 LIMFVINYFTGKRENENLALAWAAKFATKDSIFEKNFSLLGV-GEGDD---SPLLLKEGQ 94
L+ +++NY GK +N LA AW F + + E NFSL+G G D + +L +E
Sbjct: 152 LLAYIMNYIIGKNKNSRLAQAW---FNSHRELLESNFSLVGDDGMNKDAVSTGMLNQEND 208
Query: 95 NVFKFYASGRRYCSGLLATMELKSRHDLISRFYNMIVPCKDEISFEVYMNDEAMDHVVFA 154
+++ + SGR C G+L ++ R DL++ M+ P D++ +V MNDE MD VF+
Sbjct: 209 HIYNMWCSGRLCCEGMLIQLKFIKRQDLLNVLSRMMRPVCDQVQIKVTMNDEDMDTYVFS 268
Query: 155 VAKKKVAKAMQKEVRDLNRFTGGLMAAPSGGGKKWVADELGVVSESKEVAGDLITDAVLE 214
V +K +QKE++DL+ F G P K + + + V++E EV TD +++
Sbjct: 269 VGTRKTLIRLQKEMQDLSEFCGD---KPKSAAKMGLPESMAVLAEMGEV-----TDGIMD 320
Query: 215 QVFGEKAFEKHGKDFISMHFSDQHPG--------------THRKMLLFKFALPDANNMA- 259
+ S+HFSDQ G +K LLF F +P + N +
Sbjct: 321 TKMVH-YLTNYSDKIESIHFSDQFSGPKIMQEEGQPLKLPETKKTLLFTFNVPGSGNASV 379
Query: 260 -DMTRLVAL---VPYYIDLIGRYKLSPQARSKTEAARQKAAQEAYKELQNARQEALQ--- 312
DM L+ L V Y ID + +++L+ + + K + R + + K RQEA Q
Sbjct: 380 KDMEALLPLMNMVIYSIDKVKKFRLNREGKQKADKNRARVEENFLKITHVQRQEAAQTRR 439
Query: 313 --RKKADRKKMIEEADAKLSAEAIRKKEAKERARQMK 347
+K+A++++++ E D + + R +EA +R Q K
Sbjct: 440 EEKKRAEKERIMNEEDPE---KQRRLEEAAQRREQKK 473
>sp|O94280|YGX1_SCHPO UPF0674 endoplasmic reticulum membrane protein C2G5.01
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC2G5.01 PE=3 SV=1
Length = 374
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 71/160 (44%), Gaps = 19/160 (11%)
Query: 27 RRTRSSLSALRFLIMFVINYFTGKRENENLALAWAAKFATKDSIFEKNFSLLGVGEGDDS 86
R R L ++V ++ T K++N+ +A W + + S F + F+ G G +S
Sbjct: 47 RDFRLEFVILACFFLYVFSFITQKKKNQKIASRW---YGSLQSSFRQQFA--QYGPGPNS 101
Query: 87 PLLLKEGQNVFKFYASGRRYCSGLLATMELKSRHDLISRFYNMIV------------PCK 134
++ + F Y +GR + T++L R DL++ N IV P
Sbjct: 102 SPIIYDSPTEFSSYLTGRLNVKNVYTTLQLFPRQDLLAYSLNQIVEILLGNVMSSVLPVA 161
Query: 135 DEISFEVYMNDEAM--DHVVFAVAKKKVAKAMQKEVRDLN 172
D F++ + D+ + + VFA+ K + +++ DL+
Sbjct: 162 DRFQFDLTLADQNLKAERFVFAIVHKDCMRILREIRYDLS 201
>sp|P09790|IGA_NEIGO IgA-specific serine endopeptidase autotransporter OS=Neisseria
gonorrhoeae GN=iga PE=1 SV=1
Length = 1532
Score = 40.4 bits (93), Expect = 0.022, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Query: 281 SPQARSKTEAARQKAAQEAYKELQNARQEALQRKK---ADRK-----KMIEEADAKLSAE 332
SPQA EA RQ+A E K Q A E + R+K A RK + EEA
Sbjct: 1019 SPQANQAEEALRQQAKAEQVKRQQAAEAEKVARQKDEEAKRKAAEIARQQEEARKAAELA 1078
Query: 333 AIRKKEAKERARQMKK 348
A +K EA+ +AR++ +
Sbjct: 1079 AKQKAEAERKARELAR 1094
>sp|A8ABF5|VATE_IGNH4 V-type ATP synthase subunit E OS=Ignicoccus hospitalis (strain
KIN4/I / DSM 18386 / JCM 14125) GN=atpE PE=3 SV=1
Length = 208
Score = 33.9 bits (76), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 34/53 (64%)
Query: 280 LSPQARSKTEAARQKAAQEAYKELQNARQEALQRKKADRKKMIEEADAKLSAE 332
+ A++K ++ ++A +EA K L ++E L+R D +K++ +A A+LSAE
Sbjct: 17 IEKDAKAKIDSVVEEAVKEAEKLLNEKKEELLERAVVDVEKLLSDAQARLSAE 69
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 126,256,327
Number of Sequences: 539616
Number of extensions: 5211946
Number of successful extensions: 26503
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 362
Number of HSP's that attempted gapping in prelim test: 24361
Number of HSP's gapped (non-prelim): 2116
length of query: 359
length of database: 191,569,459
effective HSP length: 119
effective length of query: 240
effective length of database: 127,355,155
effective search space: 30565237200
effective search space used: 30565237200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)