Query 018218
Match_columns 359
No_of_seqs 111 out of 207
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 07:08:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018218.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018218hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07946 DUF1682: Protein of u 100.0 1.2E-84 2.5E-89 633.7 34.9 307 26-348 1-321 (321)
2 KOG2357 Uncharacterized conser 100.0 1.7E-84 3.7E-89 626.5 24.2 328 18-357 95-438 (440)
3 PRK10455 periplasmic protein; 92.5 1.6 3.4E-05 38.8 10.4 29 327-355 128-156 (161)
4 KOG2357 Uncharacterized conser 90.3 1.3 2.9E-05 44.6 8.4 13 280-292 347-359 (440)
5 KOG0163 Myosin class VI heavy 86.9 5.5 0.00012 43.3 10.5 20 101-120 659-678 (1259)
6 PF07946 DUF1682: Protein of u 86.0 5.3 0.00011 39.3 9.5 19 261-279 230-248 (321)
7 PTZ00266 NIMA-related protein 85.4 3 6.6E-05 47.1 8.3 14 117-130 221-237 (1021)
8 PRK12750 cpxP periplasmic repr 85.4 10 0.00022 33.9 10.3 25 323-347 131-155 (170)
9 KOG1029 Endocytic adaptor prot 82.7 4.5 9.8E-05 44.0 7.7 14 288-301 329-342 (1118)
10 PF11208 DUF2992: Protein of u 81.9 11 0.00023 32.5 8.5 24 242-270 21-44 (132)
11 PRK12751 cpxP periplasmic stre 74.9 12 0.00027 33.2 7.0 30 319-348 120-149 (162)
12 PTZ00266 NIMA-related protein 74.5 11 0.00025 42.7 8.2 8 55-62 118-125 (1021)
13 KOG1029 Endocytic adaptor prot 69.5 22 0.00047 39.0 8.4 8 152-159 186-193 (1118)
14 PTZ00121 MAEBL; Provisional 69.3 24 0.00051 41.3 9.0 8 193-200 920-927 (2084)
15 TIGR00570 cdk7 CDK-activating 66.5 63 0.0014 31.8 10.4 12 263-274 101-112 (309)
16 KOG4364 Chromatin assembly fac 66.2 36 0.00077 36.7 9.1 8 285-292 259-266 (811)
17 PF04644 Motilin_ghrelin: Moti 66.2 5 0.00011 25.1 1.8 20 329-349 5-24 (28)
18 KOG2002 TPR-containing nuclear 66.0 91 0.002 35.2 12.5 15 95-109 599-613 (1018)
19 PRK10363 cpxP periplasmic repr 64.7 24 0.00052 31.5 6.6 27 321-347 116-142 (166)
20 PRK00247 putative inner membra 64.2 35 0.00076 35.1 8.6 16 29-44 32-47 (429)
21 KOG2891 Surface glycoprotein [ 63.9 45 0.00098 32.3 8.6 18 111-128 119-136 (445)
22 COG3678 CpxP P pilus assembly/ 60.0 1.2E+02 0.0027 26.8 10.3 25 327-351 129-153 (160)
23 PF06518 DUF1104: Protein of u 58.8 69 0.0015 25.9 7.7 18 322-339 53-70 (93)
24 PF06098 Radial_spoke_3: Radia 58.7 68 0.0015 31.3 9.1 18 331-348 181-198 (291)
25 KOG4055 Uncharacterized conser 55.1 1E+02 0.0022 28.1 8.8 42 307-352 108-149 (213)
26 PRK00247 putative inner membra 54.4 25 0.00055 36.1 5.6 7 106-112 105-111 (429)
27 PF06658 DUF1168: Protein of u 54.2 1.4E+02 0.003 26.0 9.4 39 286-326 45-83 (142)
28 PF11460 DUF3007: Protein of u 53.7 37 0.00079 28.0 5.4 18 322-339 83-100 (104)
29 TIGR00570 cdk7 CDK-activating 52.8 1.4E+02 0.0031 29.4 10.2 16 257-272 91-106 (309)
30 PF06936 Selenoprotein_S: Sele 51.2 88 0.0019 28.6 8.1 6 292-297 89-94 (190)
31 PF06518 DUF1104: Protein of u 50.1 30 0.00065 27.9 4.3 47 290-336 44-90 (93)
32 KOG2505 Ankyrin repeat protein 49.3 70 0.0015 33.5 7.7 62 289-350 516-587 (591)
33 PF07813 LTXXQ: LTXXQ motif fa 49.0 53 0.0011 25.5 5.7 14 327-340 86-99 (100)
34 KOG3248 Transcription factor T 48.7 50 0.0011 32.8 6.3 28 316-343 220-247 (421)
35 KOG0388 SNF2 family DNA-depend 48.7 59 0.0013 35.8 7.3 34 306-348 420-453 (1185)
36 PF11743 DUF3301: Protein of u 47.9 84 0.0018 25.3 6.7 78 35-112 3-83 (97)
37 KOG2002 TPR-containing nuclear 46.6 68 0.0015 36.1 7.6 12 262-273 786-797 (1018)
38 KOG4691 Uncharacterized conser 45.2 1.5E+02 0.0032 27.3 8.4 35 242-276 42-76 (227)
39 PF15346 ARGLU: Arginine and g 44.7 1.2E+02 0.0026 26.7 7.5 32 280-311 33-64 (149)
40 PF06991 Prp19_bind: Splicing 44.3 68 0.0015 31.1 6.5 25 317-341 139-163 (276)
41 PF13025 DUF3886: Protein of u 42.6 85 0.0019 24.0 5.5 17 280-296 14-30 (70)
42 KOG2072 Translation initiation 40.8 3.1E+02 0.0066 30.8 11.2 22 189-210 516-537 (988)
43 PF10147 CR6_interact: Growth 40.1 1.3E+02 0.0028 28.2 7.4 29 271-299 101-129 (217)
44 PTZ00399 cysteinyl-tRNA-synthe 40.0 1.6E+02 0.0034 32.1 9.2 13 94-106 240-252 (651)
45 PF11293 DUF3094: Protein of u 39.8 22 0.00047 25.8 1.8 14 327-340 2-15 (55)
46 PF06523 DUF1106: Protein of u 39.7 1.8E+02 0.0038 22.5 7.6 47 88-154 17-63 (91)
47 KOG2880 SMAD6 interacting prot 39.1 94 0.002 31.2 6.6 57 282-349 91-149 (424)
48 KOG3272 Predicted coiled-coil 37.0 1.2E+02 0.0025 27.9 6.4 39 269-307 110-151 (207)
49 COG3064 TolA Membrane protein 36.5 1.4E+02 0.0031 29.5 7.3 14 298-311 101-114 (387)
50 PF12273 RCR: Chitin synthesis 36.4 27 0.00057 29.6 2.2 21 38-58 8-28 (130)
51 PF12650 DUF3784: Domain of un 36.4 36 0.00078 27.1 2.9 22 327-348 27-48 (97)
52 PF11208 DUF2992: Protein of u 36.4 1.5E+02 0.0032 25.5 6.7 9 150-158 8-16 (132)
53 PRK00478 scpA segregation and 36.0 1.9E+02 0.0041 30.5 8.8 44 297-340 440-490 (505)
54 PLN03086 PRLI-interacting fact 33.6 79 0.0017 33.7 5.6 10 283-292 15-24 (567)
55 KOG1265 Phospholipase C [Lipid 33.2 1.5E+02 0.0033 33.4 7.6 18 328-345 1131-1148(1189)
56 PF04696 Pinin_SDK_memA: pinin 32.7 3.1E+02 0.0067 23.3 9.4 39 271-309 16-54 (131)
57 PF10883 DUF2681: Protein of u 32.6 2.1E+02 0.0046 22.8 6.6 45 287-332 24-72 (87)
58 PF06102 DUF947: Domain of unk 32.2 1.9E+02 0.0041 25.8 7.0 25 323-347 139-164 (168)
59 PF09831 DUF2058: Uncharacteri 32.1 1.7E+02 0.0036 26.5 6.6 25 323-347 54-78 (177)
60 PF14265 DUF4355: Domain of un 31.8 2.2E+02 0.0047 23.6 7.0 13 323-335 35-47 (125)
61 PRK11677 hypothetical protein; 31.1 46 0.001 28.7 2.8 24 32-55 4-27 (134)
62 PF08776 VASP_tetra: VASP tetr 31.0 1.8E+02 0.0038 19.9 5.5 30 289-318 6-35 (40)
63 KOG3054 Uncharacterized conser 30.9 2.5E+02 0.0054 26.9 7.7 16 36-51 11-26 (299)
64 KOG2856 Adaptor protein PACSIN 30.6 1.9E+02 0.0041 29.3 7.2 19 325-343 170-188 (472)
65 COG3122 Uncharacterized protei 30.4 2.1E+02 0.0046 26.0 6.9 23 325-347 92-114 (215)
66 PF14193 DUF4315: Domain of un 30.3 2.7E+02 0.006 21.9 8.4 15 327-341 46-60 (83)
67 KOG4819 Uncharacterized conser 30.0 2E+02 0.0042 23.5 6.0 19 307-325 42-60 (106)
68 PF12273 RCR: Chitin synthesis 29.9 43 0.00094 28.2 2.4 22 34-55 8-29 (130)
69 KOG2441 mRNA splicing factor/p 29.9 2E+02 0.0044 29.4 7.3 15 191-205 171-185 (506)
70 COG1422 Predicted membrane pro 29.7 1.7E+02 0.0036 27.0 6.3 16 273-288 62-77 (201)
71 COG4499 Predicted membrane pro 29.6 1.7E+02 0.0037 29.8 6.8 20 21-40 136-155 (434)
72 PRK12704 phosphodiesterase; Pr 28.4 4.1E+02 0.0089 28.0 9.8 25 323-347 144-168 (520)
73 KOG2891 Surface glycoprotein [ 28.2 2.3E+02 0.005 27.6 7.2 13 189-201 156-168 (445)
74 PF01299 Lamp: Lysosome-associ 28.0 29 0.00062 33.8 1.2 20 36-55 282-301 (306)
75 PTZ00399 cysteinyl-tRNA-synthe 28.0 87 0.0019 34.0 4.9 12 283-294 515-526 (651)
76 PF11346 DUF3149: Protein of u 27.2 68 0.0015 22.1 2.5 21 34-54 20-40 (42)
77 PF13571 DUF4133: Domain of un 26.9 68 0.0015 26.1 2.9 31 26-58 17-47 (96)
78 KOG2072 Translation initiation 26.5 3.9E+02 0.0085 30.0 9.3 21 284-304 758-778 (988)
79 PF11239 DUF3040: Protein of u 25.7 60 0.0013 25.2 2.4 15 329-343 3-17 (82)
80 KOG4709 Uncharacterized conser 25.4 2.1E+02 0.0046 26.3 6.0 37 290-326 48-85 (217)
81 KOG3190 Uncharacterized conser 24.7 3.9E+02 0.0085 25.3 7.8 11 335-345 231-241 (256)
82 PF06024 DUF912: Nucleopolyhed 23.9 33 0.00071 27.9 0.6 23 33-55 70-92 (101)
83 KOG3654 Uncharacterized CH dom 23.8 1.1E+02 0.0024 32.1 4.4 7 72-78 131-137 (708)
84 PRK10328 DNA binding protein, 23.3 4.2E+02 0.0091 22.8 7.3 8 327-334 68-75 (134)
85 TIGR03319 YmdA_YtgF conserved 22.7 6.1E+02 0.013 26.7 9.8 22 323-344 138-159 (514)
86 PRK11546 zraP zinc resistance 22.7 2.4E+02 0.0051 24.7 5.7 35 279-318 43-77 (143)
87 PF06295 DUF1043: Protein of u 22.3 60 0.0013 27.5 1.9 22 34-55 2-23 (128)
88 PF15295 CCDC50_N: Coiled-coil 22.1 5.1E+02 0.011 22.3 8.5 28 317-348 101-128 (132)
89 PRK10947 global DNA-binding tr 22.1 4.6E+02 0.0099 22.6 7.3 8 327-334 68-75 (135)
90 COG3064 TolA Membrane protein 21.9 3.3E+02 0.0071 27.1 7.0 6 334-339 184-189 (387)
91 cd07680 F-BAR_PACSIN1 The F-BA 21.8 5.4E+02 0.012 24.6 8.5 21 325-345 161-181 (258)
92 PF15402 Spc7_N: N-terminus of 21.6 85 0.0018 35.4 3.3 19 307-325 142-160 (927)
93 COG5192 BMS1 GTP-binding prote 20.9 5.1E+02 0.011 28.1 8.6 15 109-123 652-666 (1077)
94 PF13801 Metal_resist: Heavy-m 20.7 4.2E+02 0.009 20.7 7.4 24 276-299 38-61 (125)
95 KOG2505 Ankyrin repeat protein 20.5 2.3E+02 0.005 29.9 5.9 15 332-346 528-542 (591)
96 PLN02316 synthase/transferase 20.1 2.5E+02 0.0055 32.3 6.7 13 332-344 289-301 (1036)
No 1
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=100.00 E-value=1.2e-84 Score=633.69 Aligned_cols=307 Identities=40% Similarity=0.654 Sum_probs=288.1
Q ss_pred ccchhhhHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhcCchhHHhccccccccccCCCcccceeecCcEEEEEeecCC
Q 018218 26 PRRTRSSLSALRFLIMFVINYFTGKRENENLALAWAAKFATKDSIFEKNFSLLGVGEGDDSPLLLKEGQNVFKFYASGRR 105 (359)
Q Consensus 26 ~~~~~~E~~~~~~l~ly~i~y~~G~~~N~~iA~~w~~~~~~~~~~L~~~Fa~VG~~~~~~~~~l~kes~~~f~~yaTGR~ 105 (359)
|++|++|++++++|++|+++|++|+++|+++|.+|+.+ |.|+|++|||+||+++++..+.|+++|+++|++|||||+
T Consensus 1 ~~~~~~E~~~l~~l~~y~~~y~~G~~~N~~~A~~w~~~---~~~~L~~~Fa~VG~~~~~~~~~l~~~s~~~f~~yaTGR~ 77 (321)
T PF07946_consen 1 WYNFYLEIIFLAFLLLYVVNYFIGKSKNRRIAKAWFES---HQPLLESNFALVGDDGSEKEPLLIKDSPNEFTFYATGRR 77 (321)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhccccCCCCCcccHHHhhcCcceEEEEEeCCC
Confidence 89999999999999999999999999999999999885 559999999999998644445799999999999999999
Q ss_pred ccceEEEEEEecCccCHHHHHHhccCCC----CceEEEEEEeCCCCCCceEEEEEehHHHHHHHHhhhhhhhhhcccccC
Q 018218 106 YCSGLLATMELKSRHDLISRFYNMIVPC----KDEISFEVYMNDEAMDHVVFAVAKKKVAKAMQKEVRDLNRFTGGLMAA 181 (359)
Q Consensus 106 ~~~~~~v~l~L~kRqDl~~~l~~~~~p~----~D~v~i~v~l~~~~~d~fV~AIv~K~~~~~~r~~~~DL~~f~~~~~~~ 181 (359)
||+||+|+|+|+||||||++++++++|. .|+|+|+|.++++.|||||||||+|+.|++++++++||+.++...
T Consensus 78 ~~~~~~v~l~L~~Rqdl~~~l~~~i~~~~~~~~D~v~i~i~~~~~~~d~fV~Aiv~K~~~~~~r~~~~dLs~~t~~~--- 154 (321)
T PF07946_consen 78 NCEGLLVTLKLKKRQDLFSWLFEFILPFFFPSKDRVTIEIKMNDENMDPFVFAIVNKKEMKKLRKDNYDLSLFTKTS--- 154 (321)
T ss_pred CeEEEEEEEEECCCcCHHHHHHHHHHhhccCCCCeEEEEEecCccccCceEEEEEcHHHHHHHHHhCcchhhccccc---
Confidence 9999999999999999999999998877 999999999999999999999999999999999999999756533
Q ss_pred CCCCCCcCCCCceEEeecchhhhhhhcChHHHHHhhhhHHHHhhccceeEEEeecCCCCC--------cceEEEEEEEcC
Q 018218 182 PSGGGKKWVADELGVVSESKEVAGDLITDAVLEQVFGEKAFEKHGKDFISMHFSDQHPGT--------HRKMLLFKFALP 253 (359)
Q Consensus 182 ~~~~~~~~Lp~~~~vmSEs~e~~~~il~~~~~~~~l~~~~l~~~~~~l~~i~iSDq~~~~--------~~k~l~~~~~lP 253 (359)
++.+||++|+||||++|+++.|+++.++ .+|++++++|+||||||||+++ ++++|+|+|++|
T Consensus 155 ----~~~~Lp~~~~vmsEs~e~~~~il~~~~~------~~l~~~~~~l~~i~~TDq~~~~p~~~~~~~~~~~l~~~~~lp 224 (321)
T PF07946_consen 155 ----ESPKLPESLVVMSESNEVTDFILTPELI------KALNKAGDYLEYIHFTDQPSGKPPTEEEATPKKRLIFSFRLP 224 (321)
T ss_pred ----cccCCCcceEEEEccHhHHHHHhChHHH------HHHHhhhhheeEEEEECCCCCCCCCcccCCcCcEEEEEEEeC
Confidence 4459999999999999999999999888 4899999999999999999753 789999999999
Q ss_pred CCCc-hHhHHHHHHHHHHHHHhhcccccCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHH-hcCCCH
Q 018218 254 DANN-MADMTRLVALVPYYIDLIGRYKLSPQARSKTEAARQKAAQEAYKELQNARQEALQRKKADRKKMIEEA-DAKLSA 331 (359)
Q Consensus 254 ~~~~-~~~~~~ll~lv~~liD~~~~~~L~~e~~~K~~k~R~~~~e~~~K~~~~~r~E~aq~kk~Ek~r~~~e~-~~~Lsp 331 (359)
++++ ++.+.+|+.++++|+|.+.++.|++++++|++++|+++.+++.|+++++++|++|++|+|++|.++++ .++|||
T Consensus 225 ~~~~~~~~~~~l~~~v~~l~D~~~~~~l~~e~~~K~~k~R~~~~~~~~K~~~~~r~E~~~~~k~e~kr~e~~~~~~~lsp 304 (321)
T PF07946_consen 225 SSSDDMEALEPLLKLVFYLIDKLARFKLSPEAKKKAKKNREEEEEKILKEAHQERQEEAQEKKEEKKREERERKLSKLSP 304 (321)
T ss_pred CCcccHHHHHHHHHHHHHHHHHhheeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 9985 99999999999999999999999999999999999999999999999999999999999998887766 799999
Q ss_pred HHHHHHHHHHHHHHhhh
Q 018218 332 EAIRKKEAKERARQMKK 348 (359)
Q Consensus 332 eeQrK~eEKe~kr~~kK 348 (359)
|||||+||||++|++||
T Consensus 305 eeQrK~eeKe~kk~~rk 321 (321)
T PF07946_consen 305 EEQRKYEEKERKKEQRK 321 (321)
T ss_pred HHHHHHHHHHHHHhccC
Confidence 99999999999999986
No 2
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.7e-84 Score=626.52 Aligned_cols=328 Identities=43% Similarity=0.650 Sum_probs=311.1
Q ss_pred CCCCcccC-ccchhhhHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhcCchhHHhccccccccccCCCcccceeecCcE
Q 018218 18 KTWPFRRN-PRRTRSSLSALRFLIMFVINYFTGKRENENLALAWAAKFATKDSIFEKNFSLLGVGEGDDSPLLLKEGQNV 96 (359)
Q Consensus 18 ~~~~~r~~-~~~~~~E~~~~~~l~ly~i~y~~G~~~N~~iA~~w~~~~~~~~~~L~~~Fa~VG~~~~~~~~~l~kes~~~ 96 (359)
.|.|||.. |++|++|++++++|++|++||++|+++|.++|.+|++ ++.++|++|||+||+++.+.++.+++|++++
T Consensus 95 ~pa~~q~~kw~sy~~E~~~v~~Ll~y~~nY~~GK~kN~klA~~wF~---s~~s~le~nFa~vG~~~~~ssp~li~es~t~ 171 (440)
T KOG2357|consen 95 VPAHFQTVKWYSYTVEIVMVAILLLYAANYFTGKRKNAKLAQAWFG---SLRSLLEENFALVGDDGNESSPLLIKESETV 171 (440)
T ss_pred CchhhhccchhhhHhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHH---HHHHHHHHhhheeCCCCCCCCchhhcccchh
Confidence 46788888 9999999999999999999999999999999999988 6679999999999998765556799999999
Q ss_pred EEEEeecCCccceEEEEEEecCccCHHHHHHhccCCCCceEEEEEEeCC-CCCCceEEEEEehHHHHHHHHhhhhhhhhh
Q 018218 97 FKFYASGRRYCSGLLATMELKSRHDLISRFYNMIVPCKDEISFEVYMND-EAMDHVVFAVAKKKVAKAMQKEVRDLNRFT 175 (359)
Q Consensus 97 f~~yaTGR~~~~~~~v~l~L~kRqDl~~~l~~~~~p~~D~v~i~v~l~~-~~~d~fV~AIv~K~~~~~~r~~~~DL~~f~ 175 (359)
|++|||||+||.||+++|+|.+||||++++++.+.|..|.|+++++|++ +.||.||||||+|+.++.+++++.||++||
T Consensus 172 Fs~~~tGR~~c~gll~~L~l~~RqDl~S~v~~~v~P~~D~vt~ev~l~d~~~md~~VFAv~tkk~~k~l~ke~~DLs~F~ 251 (440)
T KOG2357|consen 172 FSSYATGRVNCKGLLLTLKLVKRQDLLSRVMNSVRPVGDQVTFEVTLNDKEDMDHFVFAVGTKKAAKKLFKEMRDLSRFA 251 (440)
T ss_pred HHHHhcchhHHhhhhhhhhhhhhccHHHHHHHhcccccceEEEEEecCcccccceeEEeeehHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999 899999999999999999999999999999
Q ss_pred cccccCCCCCCCcCCCCceEEeecchhhhhhhcChHHHHHhhhhHHHHhhccceeEEEeecCCCCC------------cc
Q 018218 176 GGLMAAPSGGGKKWVADELGVVSESKEVAGDLITDAVLEQVFGEKAFEKHGKDFISMHFSDQHPGT------------HR 243 (359)
Q Consensus 176 ~~~~~~~~~~~~~~Lp~~~~vmSEs~e~~~~il~~~~~~~~l~~~~l~~~~~~l~~i~iSDq~~~~------------~~ 243 (359)
+.. ++| +..+|||++++||||++|++.+|+++.+++ .|++|+++|+|||||||++|| ++
T Consensus 252 si~-~~p--~~~~~lP~~~~vmSE~nEvs~~i~~~~v~~------~l~k~~~~ieyih~SDQ~sgP~~~~E~~t~~P~~~ 322 (440)
T KOG2357|consen 252 SIV-SSP--EGRYNLPESFVVMSESNEVSGAIFEDKVVS------QLNKYGDNIEYIHFSDQFSGPIDQEEGETKLPEAK 322 (440)
T ss_pred ccC-CCc--ccccCCCcceeeeecchhhhhhhhchHHHH------HHHHHHhhhheEEeecCCCCCcccccccccCchhh
Confidence 977 544 677799999999999999999999999984 889999999999999999999 89
Q ss_pred eEEEEEEEcCCC-CchHhHHHHHHHHHHHHHhhcccccCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhH
Q 018218 244 KMLLFKFALPDA-NNMADMTRLVALVPYYIDLIGRYKLSPQARSKTEAARQKAAQEAYKELQNARQEALQRKKADRKKMI 322 (359)
Q Consensus 244 k~l~~~~~lP~~-~~~~~~~~ll~lv~~liD~~~~~~L~~e~~~K~~k~R~~~~e~~~K~~~~~r~E~aq~kk~Ek~r~~ 322 (359)
+++.+.|++|.. .+++.+.+|+.|++|+||...+++||.+.+.|++++||++++++.|.+|++|||+||++|+|++|++
T Consensus 323 ~~~l~~fnlp~~~k~me~iv~i~~li~ylid~~~~~~lS~~~k~kt~~~RQ~~~e~~~K~th~~rqEaaQ~kk~Ek~Ka~ 402 (440)
T KOG2357|consen 323 RMLLFKFNLPLLNKDMEDIVEILNLIFYLIDKAKKLFLSKDAKAKTDKNRQRVEEEFLKLTHAARQEAAQEKKAEKKKAE 402 (440)
T ss_pred hhheeccCccchHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999954 5899999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHh-cCCCHHHHHHHHHHHHHHHhhhhCCCccccc
Q 018218 323 EEAD-AKLSAEAIRKKEAKERARQMKKAVPKMKMTR 357 (359)
Q Consensus 323 ~e~~-~~LspeeQrK~eEKe~kr~~kK~~~K~k~~k 357 (359)
.|++ ++++||.|||+|+||++|++|+++||||+++
T Consensus 403 kekl~a~~d~Ek~rr~EakerkR~~K~~~pKMkR~~ 438 (440)
T KOG2357|consen 403 KEKLKASGDPEKQRRKEAKERKRQAKKKQPKMKRLA 438 (440)
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHHhcChhhhhhc
Confidence 7777 8999999999999999999999999998865
No 3
>PRK10455 periplasmic protein; Reviewed
Probab=92.51 E-value=1.6 Score=38.82 Aligned_cols=29 Identities=21% Similarity=0.198 Sum_probs=25.1
Q ss_pred cCCCHHHHHHHHHHHHHHHhhhhCCCccc
Q 018218 327 AKLSAEAIRKKEAKERARQMKKAVPKMKM 355 (359)
Q Consensus 327 ~~LspeeQrK~eEKe~kr~~kK~~~K~k~ 355 (359)
.-||||+++++.++-.+|..+...++.+|
T Consensus 128 ~vLTPEQr~q~~~~~ekr~~~~~~~~~~~ 156 (161)
T PRK10455 128 NVLTPEQKKQFNANFEKRLTERPAHEGKM 156 (161)
T ss_pred HhCCHHHHHHHHHHHHHHHHhccCCCCCC
Confidence 78999999999999988888877777666
No 4
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.35 E-value=1.3 Score=44.58 Aligned_cols=13 Identities=15% Similarity=-0.156 Sum_probs=7.4
Q ss_pred cCHHHHHHhHHHH
Q 018218 280 LSPQARSKTEAAR 292 (359)
Q Consensus 280 L~~e~~~K~~k~R 292 (359)
|.+....++.+.|
T Consensus 347 li~ylid~~~~~~ 359 (440)
T KOG2357|consen 347 LIFYLIDKAKKLF 359 (440)
T ss_pred HHHHHHHHHHhhh
Confidence 4555556665555
No 5
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=86.87 E-value=5.5 Score=43.32 Aligned_cols=20 Identities=15% Similarity=0.411 Sum_probs=11.1
Q ss_pred eecCCccceEEEEEEecCcc
Q 018218 101 ASGRRYCSGLLATMELKSRH 120 (359)
Q Consensus 101 aTGR~~~~~~~v~l~L~kRq 120 (359)
.||-..+.++--+.++.+||
T Consensus 659 stGt~FiRCiKPN~kM~~~~ 678 (1259)
T KOG0163|consen 659 STGTHFIRCIKPNSKMIDRH 678 (1259)
T ss_pred hcCCeeEEeecCcccccccc
Confidence 35555555555555555555
No 6
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=85.97 E-value=5.3 Score=39.29 Aligned_cols=19 Identities=26% Similarity=0.329 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHhhcccc
Q 018218 261 MTRLVALVPYYIDLIGRYK 279 (359)
Q Consensus 261 ~~~ll~lv~~liD~~~~~~ 279 (359)
+..+..++-.+++.++.+.
T Consensus 230 ~~~~~~l~~~v~~l~D~~~ 248 (321)
T PF07946_consen 230 MEALEPLLKLVFYLIDKLA 248 (321)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3457777777778887776
No 7
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=85.39 E-value=3 Score=47.12 Aligned_cols=14 Identities=14% Similarity=0.465 Sum_probs=8.9
Q ss_pred cCccCHHHH---HHhcc
Q 018218 117 KSRHDLISR---FYNMI 130 (359)
Q Consensus 117 ~kRqDl~~~---l~~~~ 130 (359)
-..-|+|++ +|+++
T Consensus 221 s~KSDVWSLG~ILYELL 237 (1021)
T PTZ00266 221 DDKSDMWALGCIIYELC 237 (1021)
T ss_pred CchhHHHHHHHHHHHHH
Confidence 346699984 55554
No 8
>PRK12750 cpxP periplasmic repressor CpxP; Reviewed
Probab=85.38 E-value=10 Score=33.92 Aligned_cols=25 Identities=16% Similarity=0.129 Sum_probs=19.1
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHhh
Q 018218 323 EEADAKLSAEAIRKKEAKERARQMK 347 (359)
Q Consensus 323 ~e~~~~LspeeQrK~eEKe~kr~~k 347 (359)
.+=++-||||++.++.|-..+|..+
T Consensus 131 ~~~~~vLTpEQRak~~e~~~~r~~~ 155 (170)
T PRK12750 131 HQMLSILTPEQKAKFQELQQERMQE 155 (170)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 3345889999999999887776443
No 9
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.69 E-value=4.5 Score=43.95 Aligned_cols=14 Identities=21% Similarity=0.266 Sum_probs=6.6
Q ss_pred hHHHHHHHHHHHHH
Q 018218 288 TEAARQKAAQEAYK 301 (359)
Q Consensus 288 ~~k~R~~~~e~~~K 301 (359)
++++|+..++...|
T Consensus 329 LerRRq~leeqqqr 342 (1118)
T KOG1029|consen 329 LERRRQALEEQQQR 342 (1118)
T ss_pred HHHHHHHHHHHHHH
Confidence 45556444444333
No 10
>PF11208 DUF2992: Protein of unknown function (DUF2992); InterPro: IPR016787 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=81.88 E-value=11 Score=32.51 Aligned_cols=24 Identities=8% Similarity=0.144 Sum_probs=12.1
Q ss_pred cceEEEEEEEcCCCCchHhHHHHHHHHHH
Q 018218 242 HRKMLLFKFALPDANNMADMTRLVALVPY 270 (359)
Q Consensus 242 ~~k~l~~~~~lP~~~~~~~~~~ll~lv~~ 270 (359)
.-.++.+.|--.|+ | .+++.+++.
T Consensus 21 ~~~v~rv~FG~EP~-d----~Ei~~fi~~ 44 (132)
T PF11208_consen 21 KYKVARVTFGAEPK-D----PEIYEFILK 44 (132)
T ss_pred EEEEEEEeeCCCCC-c----HHHHHHHHH
Confidence 45566776763333 2 344455544
No 11
>PRK12751 cpxP periplasmic stress adaptor protein CpxP; Reviewed
Probab=74.88 E-value=12 Score=33.23 Aligned_cols=30 Identities=20% Similarity=0.127 Sum_probs=23.8
Q ss_pred HHhHHHHhcCCCHHHHHHHHHHHHHHHhhh
Q 018218 319 KKMIEEADAKLSAEAIRKKEAKERARQMKK 348 (359)
Q Consensus 319 ~r~~~e~~~~LspeeQrK~eEKe~kr~~kK 348 (359)
.+...+-+.-||||++.++.++-++|-.+-
T Consensus 120 ~~~~~qmy~lLTPEQra~l~~~~e~r~~~~ 149 (162)
T PRK12751 120 AKVRNQMYNLLTPEQKEALNKKHQERIEKL 149 (162)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 345567779999999999999888776654
No 12
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=74.53 E-value=11 Score=42.70 Aligned_cols=8 Identities=0% Similarity=-0.043 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 018218 55 NLALAWAA 62 (359)
Q Consensus 55 ~iA~~w~~ 62 (359)
..+..|+.
T Consensus 118 ~~Il~Ia~ 125 (1021)
T PTZ00266 118 HAIVDITR 125 (1021)
T ss_pred HHHHHHHH
Confidence 33334433
No 13
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.53 E-value=22 Score=39.00 Aligned_cols=8 Identities=25% Similarity=0.447 Sum_probs=3.8
Q ss_pred EEEEEehH
Q 018218 152 VFAVAKKK 159 (359)
Q Consensus 152 V~AIv~K~ 159 (359)
-|||-.-.
T Consensus 186 eWAVp~~~ 193 (1118)
T KOG1029|consen 186 EWAVPQHN 193 (1118)
T ss_pred hccccchh
Confidence 35554443
No 14
>PTZ00121 MAEBL; Provisional
Probab=69.27 E-value=24 Score=41.34 Aligned_cols=8 Identities=25% Similarity=0.675 Sum_probs=4.2
Q ss_pred ceEEeecc
Q 018218 193 ELGVVSES 200 (359)
Q Consensus 193 ~~~vmSEs 200 (359)
.|.+++|.
T Consensus 920 kFG~~d~~ 927 (2084)
T PTZ00121 920 SFGIFDEK 927 (2084)
T ss_pred ceeeEeCC
Confidence 45566543
No 15
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=66.52 E-value=63 Score=31.80 Aligned_cols=12 Identities=8% Similarity=0.011 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHh
Q 018218 263 RLVALVPYYIDL 274 (359)
Q Consensus 263 ~ll~lv~~liD~ 274 (359)
..=.+|++|+..
T Consensus 101 ~vEdii~nL~~~ 112 (309)
T TIGR00570 101 EVEDIVYNLTNN 112 (309)
T ss_pred HHHHHHHHhhcC
Confidence 333455555544
No 16
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=66.16 E-value=36 Score=36.73 Aligned_cols=8 Identities=38% Similarity=0.530 Sum_probs=3.3
Q ss_pred HHHhHHHH
Q 018218 285 RSKTEAAR 292 (359)
Q Consensus 285 ~~K~~k~R 292 (359)
+.|..+.|
T Consensus 259 reK~R~er 266 (811)
T KOG4364|consen 259 REKERKER 266 (811)
T ss_pred HHHHHHHH
Confidence 34444443
No 17
>PF04644 Motilin_ghrelin: Motilin/ghrelin; InterPro: IPR006738 Motilin is a gastrointestinal regulatory polypeptide produced by motilin cells in the duodenal epithelium. It is released into the general circulation at about 100-min intervals during the inter-digestive state and is the most important factor in controlling the inter-digestive migrating contractions. Motilin also stimulates endogenous release of the endocrine pancreas []. This domain is also found in ghrelin, a growth hormone secretagogue synthesised by endocrine cells in the stomach. Ghrelin stimulates growth hormone secretagogue receptors in the pituitary. These receptors are distinct from the growth hormone-releasing hormone receptors, and thus provide a means of controlling pituitary growth hormone release by the gastrointestinal system [].; GO: 0005179 hormone activity, 0005576 extracellular region; PDB: 1LBJ_A.
Probab=66.15 E-value=5 Score=25.06 Aligned_cols=20 Identities=35% Similarity=0.423 Sum_probs=11.2
Q ss_pred CCHHHHHHHHHHHHHHHhhhh
Q 018218 329 LSAEAIRKKEAKERARQMKKA 349 (359)
Q Consensus 329 LspeeQrK~eEKe~kr~~kK~ 349 (359)
++||-| |..|||++|-++|+
T Consensus 5 ~~~e~q-r~QekE~nk~~kKs 24 (28)
T PF04644_consen 5 TSSEHQ-RMQEKERNKGQKKS 24 (28)
T ss_dssp -HHHHH-HHHHHHHHHH----
T ss_pred cchHHH-HHHHHHhccCcccc
Confidence 456555 45899999888873
No 18
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=66.00 E-value=91 Score=35.18 Aligned_cols=15 Identities=20% Similarity=0.476 Sum_probs=7.9
Q ss_pred cEEEEEeecCCccce
Q 018218 95 NVFKFYASGRRYCSG 109 (359)
Q Consensus 95 ~~f~~yaTGR~~~~~ 109 (359)
+.|++.+=|...++.
T Consensus 599 D~YsliaLGN~~~~~ 613 (1018)
T KOG2002|consen 599 DAYSLIALGNVYIQA 613 (1018)
T ss_pred chhHHHHhhHHHHHH
Confidence 446666666643333
No 19
>PRK10363 cpxP periplasmic repressor CpxP; Reviewed
Probab=64.69 E-value=24 Score=31.53 Aligned_cols=27 Identities=15% Similarity=0.095 Sum_probs=20.7
Q ss_pred hHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 018218 321 MIEEADAKLSAEAIRKKEAKERARQMK 347 (359)
Q Consensus 321 ~~~e~~~~LspeeQrK~eEKe~kr~~k 347 (359)
...+=+.-||||++.+++++..+|-..
T Consensus 116 ~~nqmy~lLTPEQKaq~~~~~~~rm~~ 142 (166)
T PRK10363 116 VRNQMYRLLTPEQQAVLNEKHQQRMEQ 142 (166)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 345555789999999999888777544
No 20
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=64.21 E-value=35 Score=35.07 Aligned_cols=16 Identities=25% Similarity=0.131 Sum_probs=8.1
Q ss_pred hhhhHHHHHHHHHHHH
Q 018218 29 TRSSLSALRFLIMFVI 44 (359)
Q Consensus 29 ~~~E~~~~~~l~ly~i 44 (359)
|..=++++.+++=.++
T Consensus 32 W~isIi~ltiiVRliL 47 (429)
T PRK00247 32 WFASLFGLVITVRAII 47 (429)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666665554443333
No 21
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=63.90 E-value=45 Score=32.32 Aligned_cols=18 Identities=33% Similarity=0.477 Sum_probs=12.1
Q ss_pred EEEEEecCccCHHHHHHh
Q 018218 111 LATMELKSRHDLISRFYN 128 (359)
Q Consensus 111 ~v~l~L~kRqDl~~~l~~ 128 (359)
-+.+.+..|||-=.++++
T Consensus 119 eakidfpsrhdwdd~fm~ 136 (445)
T KOG2891|consen 119 EAKIDFPSRHDWDDFFMD 136 (445)
T ss_pred hhcCCCCcccchHHHHhh
Confidence 356677777777777655
No 22
>COG3678 CpxP P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein [Intracellular trafficking and secretion / Cell motility and secretio / Signal transduction mechanisms / Inorganic ion transport and metabolism]
Probab=60.03 E-value=1.2e+02 Score=26.84 Aligned_cols=25 Identities=16% Similarity=0.094 Sum_probs=19.0
Q ss_pred cCCCHHHHHHHHHHHHHHHhhhhCC
Q 018218 327 AKLSAEAIRKKEAKERARQMKKAVP 351 (359)
Q Consensus 327 ~~LspeeQrK~eEKe~kr~~kK~~~ 351 (359)
.-|+||++.++-+...+|-......
T Consensus 129 ~vLTPEQr~~l~~~~~~r~~~~~~~ 153 (160)
T COG3678 129 QVLTPEQRAKLQELLAQRREERQQR 153 (160)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhc
Confidence 6799999989988887766554443
No 23
>PF06518 DUF1104: Protein of unknown function (DUF1104); InterPro: IPR009488 This family consists of several hypothetical proteins of unknown function which appear to be found exclusively in Helicobacter pylori.; PDB: 2XRH_A.
Probab=58.84 E-value=69 Score=25.88 Aligned_cols=18 Identities=22% Similarity=0.300 Sum_probs=11.0
Q ss_pred HHHHhcCCCHHHHHHHHH
Q 018218 322 IEEADAKLSAEAIRKKEA 339 (359)
Q Consensus 322 ~~e~~~~LspeeQrK~eE 339 (359)
.....++||+++.+++.+
T Consensus 53 ~~kn~~~ms~~e~~k~~~ 70 (93)
T PF06518_consen 53 ARKNLSKMSVEERKKRRE 70 (93)
T ss_dssp HHHHHTTS-HHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHH
Confidence 344667778777777744
No 24
>PF06098 Radial_spoke_3: Radial spoke protein 3; InterPro: IPR009290 This family consists of several radial spoke protein 3 (RSP3) sequences. Eukaryotic cilia and flagella present in diverse types of cells perform motile, sensory, and developmental functions in organisms from protists to humans. They are centred by precisely organised, microtubule-based structures, the axonemes. The axoneme consists of two central singlet microtubules, called the central pair, and nine outer doublet microtubules. These structures are well conserved during evolution. The outer doublet microtubules, each composed of A and B sub-fibres, are connected to each other by nexin links, while the central pair is held at the centre of the axoneme by radial spokes. The radial spokes are T-shaped structures extending from the A-tubule of each outer doublet microtubule to the centre of the axoneme. Radial spoke protein 3 (RSP3), is present at the proximal end of the spoke stalk and helps in anchoring the radial spoke to the outer doublet. It is thought that radial spokes regulate the activity of inner arm dynein through protein phosphorylation and dephosphorylation [].
Probab=58.72 E-value=68 Score=31.28 Aligned_cols=18 Identities=33% Similarity=0.469 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 018218 331 AEAIRKKEAKERARQMKK 348 (359)
Q Consensus 331 peeQrK~eEKe~kr~~kK 348 (359)
..++|+.+|||+...+.+
T Consensus 181 ~~e~r~~eEkerR~~q~~ 198 (291)
T PF06098_consen 181 EAEKRRREEKERRIKQQK 198 (291)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456677777776665543
No 25
>KOG4055 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.07 E-value=1e+02 Score=28.11 Aligned_cols=42 Identities=24% Similarity=0.261 Sum_probs=21.6
Q ss_pred HHHHHHHhHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHHhhhhCCC
Q 018218 307 RQEALQRKKADRKKMIEEADAKLSAEAIRKKEAKERARQMKKAVPK 352 (359)
Q Consensus 307 r~E~aq~kk~Ek~r~~~e~~~~LspeeQrK~eEKe~kr~~kK~~~K 352 (359)
-.++-|.+.++.+++++|+- +..+.|.+.+.++.+-|+..|+
T Consensus 108 ~daefq~r~ek~~kaaEeKT----aKKRaKRqk~Kq~akkkklakk 149 (213)
T KOG4055|consen 108 LDAEFQIRLEKNQKAAEEKT----AKKRAKRQKKKQKAKKKKLAKK 149 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhcccc
Confidence 34455666666667777775 5455555443333333333333
No 26
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=54.36 E-value=25 Score=36.08 Aligned_cols=7 Identities=29% Similarity=0.330 Sum_probs=3.1
Q ss_pred ccceEEE
Q 018218 106 YCSGLLA 112 (359)
Q Consensus 106 ~~~~~~v 112 (359)
+|--+++
T Consensus 105 gcLP~LI 111 (429)
T PRK00247 105 GCVPALI 111 (429)
T ss_pred HHHHHHH
Confidence 5544433
No 27
>PF06658 DUF1168: Protein of unknown function (DUF1168); InterPro: IPR009548 This family consists of several hypothetical eukaryotic proteins of unknown function.
Probab=54.19 E-value=1.4e+02 Score=26.05 Aligned_cols=39 Identities=33% Similarity=0.438 Sum_probs=21.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHh
Q 018218 286 SKTEAARQKAAQEAYKELQNARQEALQRKKADRKKMIEEAD 326 (359)
Q Consensus 286 ~K~~k~R~~~~e~~~K~~~~~r~E~aq~kk~Ek~r~~~e~~ 326 (359)
++....|+...++..+. ...+++.+.++++.++..+++.
T Consensus 45 RRrE~~Rl~~me~~~~~--e~~~~eF~~kree~~~~~eekT 83 (142)
T PF06658_consen 45 RRREYERLEYMEEEAKK--EKEDEEFQRKREERKKEAEEKT 83 (142)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 44455565544433222 2244555777777777777775
No 28
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=53.74 E-value=37 Score=28.02 Aligned_cols=18 Identities=22% Similarity=0.320 Sum_probs=14.0
Q ss_pred HHHHhcCCCHHHHHHHHH
Q 018218 322 IEEADAKLSAEAIRKKEA 339 (359)
Q Consensus 322 ~~e~~~~LspeeQrK~eE 339 (359)
.+++...||||||.++++
T Consensus 83 lqkRle~l~~eE~~~L~~ 100 (104)
T PF11460_consen 83 LQKRLEELSPEELEALQA 100 (104)
T ss_pred HHHHHHhCCHHHHHHHHH
Confidence 344678899999998864
No 29
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=52.81 E-value=1.4e+02 Score=29.39 Aligned_cols=16 Identities=6% Similarity=0.154 Sum_probs=9.2
Q ss_pred chHhHHHHHHHHHHHH
Q 018218 257 NMADMTRLVALVPYYI 272 (359)
Q Consensus 257 ~~~~~~~ll~lv~~li 272 (359)
++.++...|.-+-.+|
T Consensus 91 ~l~~yNdYLE~vEdii 106 (309)
T TIGR00570 91 SLREYNDYLEEVEDIV 106 (309)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 3445666666666655
No 30
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=51.24 E-value=88 Score=28.60 Aligned_cols=6 Identities=17% Similarity=0.540 Sum_probs=2.1
Q ss_pred HHHHHH
Q 018218 292 RQKAAQ 297 (359)
Q Consensus 292 R~~~~e 297 (359)
|++..+
T Consensus 89 R~RmQE 94 (190)
T PF06936_consen 89 RRRMQE 94 (190)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 31
>PF06518 DUF1104: Protein of unknown function (DUF1104); InterPro: IPR009488 This family consists of several hypothetical proteins of unknown function which appear to be found exclusively in Helicobacter pylori.; PDB: 2XRH_A.
Probab=50.08 E-value=30 Score=27.94 Aligned_cols=47 Identities=17% Similarity=0.297 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHhcCCCHHHHHH
Q 018218 290 AARQKAAQEAYKELQNARQEALQRKKADRKKMIEEADAKLSAEAIRK 336 (359)
Q Consensus 290 k~R~~~~e~~~K~~~~~r~E~aq~kk~Ek~r~~~e~~~~LspeeQrK 336 (359)
..+.++.+...|.+.+--.+...+.+.|-++..+++..+||++|-++
T Consensus 44 ~f~~~~~~~~~kn~~~ms~~e~~k~~~ev~k~~~~~~~~mS~kE~~~ 90 (93)
T PF06518_consen 44 DFKKQFKEAARKNLSKMSVEERKKRREEVRKALEKRIKKMSVKEAKE 90 (93)
T ss_dssp HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHT----S------
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 33444444444444433444444455566666777889999987654
No 32
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=49.27 E-value=70 Score=33.51 Aligned_cols=62 Identities=23% Similarity=0.229 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---H-------hHHHHhcCCCHHHHHHHHHHHHHHHhhhhC
Q 018218 289 EAARQKAAQEAYKELQNARQEALQRKKADRK---K-------MIEEADAKLSAEAIRKKEAKERARQMKKAV 350 (359)
Q Consensus 289 ~k~R~~~~e~~~K~~~~~r~E~aq~kk~Ek~---r-------~~~e~~~~LspeeQrK~eEKe~kr~~kK~~ 350 (359)
++.+|+..+++.|+++++++-...++.+|++ + ++-.+...|+||...++.+..+-..+-++|
T Consensus 516 k~anqka~kk~kkelrkaeekqk~ae~sereg~gk~l~i~~v~~v~~l~sl~~e~r~r~~re~ra~aa~~rm 587 (591)
T KOG2505|consen 516 KKANQKAKKKLKKELRKAEEKQKYAEMSEREGDGKLLGIPPVLRVHQLGSLLPETRFRYSRESRACAAEHRM 587 (591)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccCCChHHHHHHHhccCchhhHHHHHHHHHHHHHHhh
Confidence 4455555555555555443333222333321 1 112334678899988887665555444333
No 33
>PF07813 LTXXQ: LTXXQ motif family protein; InterPro: IPR012899 This five residue motif is found in a number of bacterial proteins bearing similarity to the protein CpxP (P32158 from SWISSPROT). This is a periplasmic protein that aids in combating extracytoplasmic protein-mediated toxicity, and may also be involved in the response to alkaline pH []. Another member of this family, Spy (P77754 from SWISSPROT) is also a periplasmic protein that may be involved in the response to stress []. The homology between CpxP and Spy may indicate that these two proteins are functionally related []. The motif is found repeated twice in many members of this entry. ; GO: 0042597 periplasmic space; PDB: 3ITF_B 3QZC_B 3OEO_D 3O39_A.
Probab=49.03 E-value=53 Score=25.52 Aligned_cols=14 Identities=29% Similarity=0.204 Sum_probs=10.6
Q ss_pred cCCCHHHHHHHHHH
Q 018218 327 AKLSAEAIRKKEAK 340 (359)
Q Consensus 327 ~~LspeeQrK~eEK 340 (359)
+.||||++.++.+.
T Consensus 86 ~vLt~eQk~~~~~l 99 (100)
T PF07813_consen 86 AVLTPEQKEKFDQL 99 (100)
T ss_dssp TTS-HHHHHHHHHH
T ss_pred hcCCHHHHHHHHHh
Confidence 78999999988653
No 34
>KOG3248 consensus Transcription factor TCF-4 [Transcription]
Probab=48.69 E-value=50 Score=32.80 Aligned_cols=28 Identities=21% Similarity=0.088 Sum_probs=19.4
Q ss_pred HHHHHhHHHHhcCCCHHHHHHHHHHHHH
Q 018218 316 ADRKKMIEEADAKLSAEAIRKKEAKERA 343 (359)
Q Consensus 316 ~Ek~r~~~e~~~~LspeeQrK~eEKe~k 343 (359)
++-.++.-.+.-.||.|||.||=|-.||
T Consensus 220 AaiNqiLGrRWH~LSrEEQAKYyElArK 247 (421)
T KOG3248|consen 220 AAINQILGRRWHALSREEQAKYYELARK 247 (421)
T ss_pred HHHHHHHhHHHhhhhHHHHHHHHHHHHH
Confidence 3444455556778999999998776554
No 35
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=48.68 E-value=59 Score=35.78 Aligned_cols=34 Identities=35% Similarity=0.467 Sum_probs=17.5
Q ss_pred HHHHHHHHhHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHHhhh
Q 018218 306 ARQEALQRKKADRKKMIEEADAKLSAEAIRKKEAKERARQMKK 348 (359)
Q Consensus 306 ~r~E~aq~kk~Ek~r~~~e~~~~LspeeQrK~eEKe~kr~~kK 348 (359)
.|+++...||+|++.+++.+ |-.||+|-+||+||
T Consensus 420 er~~rd~rKK~EkEamer~K---------rEeEerEskRQark 453 (1185)
T KOG0388|consen 420 ERNMRDLRKKAEKEAMERAK---------REEEERESKRQARK 453 (1185)
T ss_pred hHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHH
Confidence 45555555666654433222 22346666777665
No 36
>PF11743 DUF3301: Protein of unknown function (DUF3301); InterPro: IPR021732 This family is conserved in Proteobacteria, but the function is not known.
Probab=47.88 E-value=84 Score=25.35 Aligned_cols=78 Identities=19% Similarity=0.194 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHhhchhhHHHHHHHHHHhc--CchhHHhccccccccccCCC-cccceeecCcEEEEEeecCCccceEE
Q 018218 35 ALRFLIMFVINYFTGKRENENLALAWAAKFA--TKDSIFEKNFSLLGVGEGDD-SPLLLKEGQNVFKFYASGRRYCSGLL 111 (359)
Q Consensus 35 ~~~~l~ly~i~y~~G~~~N~~iA~~w~~~~~--~~~~~L~~~Fa~VG~~~~~~-~~~l~kes~~~f~~yaTGR~~~~~~~ 111 (359)
++.++++.++.+|+-....+.+|...+..+| ....+|+...+.-+..-..+ .+.+--..--.|.+-.+|-...+|-+
T Consensus 3 l~llll~~~~~~~w~~~~~~E~A~~~a~~~C~~~~lQlLd~~v~~~r~~~~r~~~g~~~~~r~y~FEFS~~G~~ry~G~l 82 (97)
T PF11743_consen 3 LLLLLLALVGWFWWQSRRQRERALQAARRACKRQDLQLLDDAVALRRLRLKRDSRGRLRWRRVYQFEFSSDGEDRYQGEL 82 (97)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCcchHHHHhhCccccccCCCCCeEEEEEEEEEEeCCChhcceEEE
Confidence 4555667778888999999999999999877 23345555444433322111 12233344556777788877777655
Q ss_pred E
Q 018218 112 A 112 (359)
Q Consensus 112 v 112 (359)
+
T Consensus 83 ~ 83 (97)
T PF11743_consen 83 V 83 (97)
T ss_pred E
Confidence 4
No 37
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=46.57 E-value=68 Score=36.13 Aligned_cols=12 Identities=8% Similarity=-0.089 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 018218 262 TRLVALVPYYID 273 (359)
Q Consensus 262 ~~ll~lv~~liD 273 (359)
.....++-++.+
T Consensus 786 e~a~r~F~~ls~ 797 (1018)
T KOG2002|consen 786 EEARRLFTELSK 797 (1018)
T ss_pred HHHHHHHHHHHh
Confidence 334444444443
No 38
>KOG4691 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.22 E-value=1.5e+02 Score=27.26 Aligned_cols=35 Identities=14% Similarity=0.199 Sum_probs=21.4
Q ss_pred cceEEEEEEEcCCCCchHhHHHHHHHHHHHHHhhc
Q 018218 242 HRKMLLFKFALPDANNMADMTRLVALVPYYIDLIG 276 (359)
Q Consensus 242 ~~k~l~~~~~lP~~~~~~~~~~ll~lv~~liD~~~ 276 (359)
..+..++..+.|+..+-++...||..--++=..+.
T Consensus 42 ~aKsk~~rV~~~p~q~pee~~eLm~r~~~Y~~~vr 76 (227)
T KOG4691|consen 42 LAKSKIERVNMPPAQDPEEFFELMERYQHYRQTVR 76 (227)
T ss_pred hhhhhhhccCCCccCCHHHHHHHHHHHHHHHHHHH
Confidence 34455666777777666777777765544444443
No 39
>PF15346 ARGLU: Arginine and glutamate-rich 1
Probab=44.70 E-value=1.2e+02 Score=26.65 Aligned_cols=32 Identities=25% Similarity=0.479 Sum_probs=20.0
Q ss_pred cCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 018218 280 LSPQARSKTEAARQKAAQEAYKELQNARQEAL 311 (359)
Q Consensus 280 L~~e~~~K~~k~R~~~~e~~~K~~~~~r~E~a 311 (359)
+-.+...++...|....+....++...++.++
T Consensus 33 i~~ei~rRvee~r~~me~~v~~ele~ek~~~l 64 (149)
T PF15346_consen 33 IEKEIQRRVEEERKKMEKQVAEELEREKEEAL 64 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455577777777777776666665544444
No 40
>PF06991 Prp19_bind: Splicing factor, Prp19-binding domain; InterPro: IPR009730 This entry represents the C terminus (approximately 300 residues) of eukaryotic micro-fibrillar-associated protein 1, which is a component of elastin-associated microfibrils in the extracellular matrix [].
Probab=44.26 E-value=68 Score=31.06 Aligned_cols=25 Identities=16% Similarity=0.275 Sum_probs=16.5
Q ss_pred HHHHhHHHHhcCCCHHHHHHHHHHH
Q 018218 317 DRKKMIEEADAKLSAEAIRKKEAKE 341 (359)
Q Consensus 317 Ek~r~~~e~~~~LspeeQrK~eEKe 341 (359)
|+++.+-|+...||.||++....+.
T Consensus 139 EkEkeEiERrR~mteEEr~~ed~~~ 163 (276)
T PF06991_consen 139 EKEKEEIERRRNMTEEERRAEDREN 163 (276)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHhh
Confidence 4444555666889998877765543
No 41
>PF13025 DUF3886: Protein of unknown function (DUF3886)
Probab=42.55 E-value=85 Score=24.04 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=10.4
Q ss_pred cCHHHHHHhHHHHHHHH
Q 018218 280 LSPQARSKTEAARQKAA 296 (359)
Q Consensus 280 L~~e~~~K~~k~R~~~~ 296 (359)
|++++..|+...+++..
T Consensus 14 L~~d~~~kLka~k~eLk 30 (70)
T PF13025_consen 14 LNEDVLAKLKAKKQELK 30 (70)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 55667777766664433
No 42
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=40.79 E-value=3.1e+02 Score=30.76 Aligned_cols=22 Identities=14% Similarity=0.114 Sum_probs=12.5
Q ss_pred CCCCceEEeecchhhhhhhcCh
Q 018218 189 WVADELGVVSESKEVAGDLITD 210 (359)
Q Consensus 189 ~Lp~~~~vmSEs~e~~~~il~~ 210 (359)
++-+.++.|+++-.-.-..++|
T Consensus 516 ~ir~~L~~m~~~L~~~~e~~dp 537 (988)
T KOG2072|consen 516 GIRSQLTAMAESLSKVVEELDP 537 (988)
T ss_pred hHHHHHHHHHHHHHHHHHhhCh
Confidence 3444567777775555555555
No 43
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=40.10 E-value=1.3e+02 Score=28.16 Aligned_cols=29 Identities=10% Similarity=0.256 Sum_probs=15.0
Q ss_pred HHHhhcccccCHHHHHHhHHHHHHHHHHH
Q 018218 271 YIDLIGRYKLSPQARSKTEAARQKAAQEA 299 (359)
Q Consensus 271 liD~~~~~~L~~e~~~K~~k~R~~~~e~~ 299 (359)
|-+.+..+.............|++.+.+-
T Consensus 101 l~em~k~~~~~~~~k~~k~~~Rek~Ia~n 129 (217)
T PF10147_consen 101 LQEMLKELREKKEEKEEKRLAREKEIAKN 129 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555566665555443
No 44
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=40.00 E-value=1.6e+02 Score=32.09 Aligned_cols=13 Identities=15% Similarity=0.028 Sum_probs=10.7
Q ss_pred CcEEEEEeecCCc
Q 018218 94 QNVFKFYASGRRY 106 (359)
Q Consensus 94 ~~~f~~yaTGR~~ 106 (359)
+.|.+-|.-||.|
T Consensus 240 p~W~SpwG~GrPG 252 (651)
T PTZ00399 240 PSWDSPWGKGRPG 252 (651)
T ss_pred CCCCCCCCCCCCC
Confidence 5688888889888
No 45
>PF11293 DUF3094: Protein of unknown function (DUF3094); InterPro: IPR021444 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=39.84 E-value=22 Score=25.80 Aligned_cols=14 Identities=14% Similarity=0.323 Sum_probs=11.9
Q ss_pred cCCCHHHHHHHHHH
Q 018218 327 AKLSAEAIRKKEAK 340 (359)
Q Consensus 327 ~~LspeeQrK~eEK 340 (359)
++|+||.|+|-|+=
T Consensus 2 ~rL~pEDQ~~Vd~y 15 (55)
T PF11293_consen 2 SRLNPEDQQRVDEY 15 (55)
T ss_pred CCCCHHHHHHHHHH
Confidence 57999999998763
No 46
>PF06523 DUF1106: Protein of unknown function (DUF1106); InterPro: IPR009490 This family consists of several hypothetical bacterial proteins found in Escherichia coli and Citrobacter rodentium. The function of this family is unknown.
Probab=39.67 E-value=1.8e+02 Score=22.52 Aligned_cols=47 Identities=19% Similarity=0.427 Sum_probs=34.6
Q ss_pred cceeecCcEEEEEeecCCccceEEEEEEecCccCHHHHHHhccCCCCceEEEEEEeCCCCCCceEEE
Q 018218 88 LLLKEGQNVFKFYASGRRYCSGLLATMELKSRHDLISRFYNMIVPCKDEISFEVYMNDEAMDHVVFA 154 (359)
Q Consensus 88 ~l~kes~~~f~~yaTGR~~~~~~~v~l~L~kRqDl~~~l~~~~~p~~D~v~i~v~l~~~~~d~fV~A 154 (359)
-+..++.+.|++.| || ..|+.+++++.+ ..+.+.|++++++.. -||-
T Consensus 17 ryfeq~e~sfsiic-gr--lrgiv~t~kcs~----------------g~iylsi~v~pnn~~-hi~l 63 (91)
T PF06523_consen 17 RYFEQGEHSFSIIC-GR--LRGIVLTIKCSN----------------GIIYLSIKVNPNNSN-HIFL 63 (91)
T ss_pred ehhhccCeeEEEEe-ec--eeeEEEEEEecC----------------cEEEEEEEeCCCCcc-eEEE
Confidence 46778899999998 44 356788888754 788889999886643 3443
No 47
>KOG2880 consensus SMAD6 interacting protein AMSH, contains JAB/MPN/Mov34 domain [Signal transduction mechanisms]
Probab=39.11 E-value=94 Score=31.22 Aligned_cols=57 Identities=25% Similarity=0.307 Sum_probs=28.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHhcCCCHHHHHHHHHHHHHH--Hhhhh
Q 018218 282 PQARSKTEAARQKAAQEAYKELQNARQEALQRKKADRKKMIEEADAKLSAEAIRKKEAKERAR--QMKKA 349 (359)
Q Consensus 282 ~e~~~K~~k~R~~~~e~~~K~~~~~r~E~aq~kk~Ek~r~~~e~~~~LspeeQrK~eEKe~kr--~~kK~ 349 (359)
++.-.+++..+.+....+..+..+..+ .|++.++|+..+|+- +..+|+|+|| ++|.+
T Consensus 91 ~~~~p~~deL~~~ll~rY~~eyn~y~~--------~K~k~~~E~~k~le~---~~~~E~e~kr~aq~k~Q 149 (424)
T KOG2880|consen 91 EEAFPRIDELKAKLLKRYNVEYNEYDH--------SKKKNLAERFKKLEV---QREEETERKRSAQTKQQ 149 (424)
T ss_pred HHhhhhHHHHHHHHHHHHhhHHHHHHH--------HHhhhHHHHHHHhhc---chhhHHHHHHHHHHhhh
Confidence 555556666664444444444332222 222334455555544 5566788777 44443
No 48
>KOG3272 consensus Predicted coiled-coil protein [General function prediction only]
Probab=37.02 E-value=1.2e+02 Score=27.87 Aligned_cols=39 Identities=10% Similarity=0.137 Sum_probs=19.7
Q ss_pred HHHHHhhcccccCHH---HHHHhHHHHHHHHHHHHHHHHHHH
Q 018218 269 PYYIDLIGRYKLSPQ---ARSKTEAARQKAAQEAYKELQNAR 307 (359)
Q Consensus 269 ~~liD~~~~~~L~~e---~~~K~~k~R~~~~e~~~K~~~~~r 307 (359)
++.--.|.++..... +..++.++|-+...-..+..++++
T Consensus 110 fh~~k~vr~~~~~~r~Nei~NrL~kTkve~~~~d~~~lrEar 151 (207)
T KOG3272|consen 110 FHSTKQVRRIVVEKRINEIVNRLAKTKVERFKPDFAALREAR 151 (207)
T ss_pred chhhhheeeeeecchHHHHHHHHhhhhHhhcchhHHHHHHHH
Confidence 333344445555443 556677777555544444444443
No 49
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=36.45 E-value=1.4e+02 Score=29.46 Aligned_cols=14 Identities=36% Similarity=0.465 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHH
Q 018218 298 EAYKELQNARQEAL 311 (359)
Q Consensus 298 ~~~K~~~~~r~E~a 311 (359)
+.++++..+|++++
T Consensus 101 ErlkQle~er~~a~ 114 (387)
T COG3064 101 ERLKQLEKERLKAQ 114 (387)
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555444444
No 50
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=36.41 E-value=27 Score=29.56 Aligned_cols=21 Identities=10% Similarity=0.078 Sum_probs=8.5
Q ss_pred HHHHHHHHHHhhchhhHHHHH
Q 018218 38 FLIMFVINYFTGKRENENLAL 58 (359)
Q Consensus 38 ~l~ly~i~y~~G~~~N~~iA~ 58 (359)
||+++++++|.+-..|+++..
T Consensus 8 ii~~i~l~~~~~~~~~rRR~r 28 (130)
T PF12273_consen 8 IIVAILLFLFLFYCHNRRRRR 28 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 333333333344444444443
No 51
>PF12650 DUF3784: Domain of unknown function (DUF3784); InterPro: IPR017259 This group represents an uncharacterised conserved protein.
Probab=36.40 E-value=36 Score=27.12 Aligned_cols=22 Identities=32% Similarity=0.318 Sum_probs=18.3
Q ss_pred cCCCHHHHHHHHHHHHHHHhhh
Q 018218 327 AKLSAEAIRKKEAKERARQMKK 348 (359)
Q Consensus 327 ~~LspeeQrK~eEKe~kr~~kK 348 (359)
.-||.|||+|++||..-|.+.+
T Consensus 27 ntms~eEk~~~D~~~l~r~~g~ 48 (97)
T PF12650_consen 27 NTMSKEEKEKYDKKKLCRFMGK 48 (97)
T ss_pred ccCCHHHHHHhhHHHHHHHHHH
Confidence 4589999999999988777664
No 52
>PF11208 DUF2992: Protein of unknown function (DUF2992); InterPro: IPR016787 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=36.36 E-value=1.5e+02 Score=25.55 Aligned_cols=9 Identities=11% Similarity=0.076 Sum_probs=4.6
Q ss_pred ceEEEEEeh
Q 018218 150 HVVFAVAKK 158 (359)
Q Consensus 150 ~fV~AIv~K 158 (359)
+|=.||+..
T Consensus 8 ~FWvGv~E~ 16 (132)
T PF11208_consen 8 PFWVGVFER 16 (132)
T ss_pred CcEEEEEEE
Confidence 455555543
No 53
>PRK00478 scpA segregation and condensation protein A/unknown domain fusion protein; Provisional
Probab=36.04 E-value=1.9e+02 Score=30.49 Aligned_cols=44 Identities=23% Similarity=0.216 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHh-------HHHHhcCCCHHHHHHHHHH
Q 018218 297 QEAYKELQNARQEALQRKKADRKKM-------IEEADAKLSAEAIRKKEAK 340 (359)
Q Consensus 297 e~~~K~~~~~r~E~aq~kk~Ek~r~-------~~e~~~~LspeeQrK~eEK 340 (359)
++.+++.++.|.-.-.++|++--+. -+|..-+|||||..-.+-+
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (505)
T PRK00478 440 KESIKQIQEERAISNFQKREEYLKKKYGEYYLSREQYQKLTPEEKINIRIN 490 (505)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhcChhhhhHHHHH
Confidence 3344444444444444555554332 2677789999986555433
No 54
>PLN03086 PRLI-interacting factor K; Provisional
Probab=33.61 E-value=79 Score=33.73 Aligned_cols=10 Identities=20% Similarity=0.514 Sum_probs=3.7
Q ss_pred HHHHHhHHHH
Q 018218 283 QARSKTEAAR 292 (359)
Q Consensus 283 e~~~K~~k~R 292 (359)
|.+++..+.|
T Consensus 15 ~~~~~~~~~~ 24 (567)
T PLN03086 15 EQRERKQRAK 24 (567)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 55
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=33.15 E-value=1.5e+02 Score=33.39 Aligned_cols=18 Identities=28% Similarity=0.259 Sum_probs=11.2
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 018218 328 KLSAEAIRKKEAKERARQ 345 (359)
Q Consensus 328 ~LspeeQrK~eEKe~kr~ 345 (359)
+..-++.++++|++.+|+
T Consensus 1131 ~~~V~e~krL~~~~~k~~ 1148 (1189)
T KOG1265|consen 1131 KEFVEERKRLAEKQSKRQ 1148 (1189)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344567777777666655
No 56
>PF04696 Pinin_SDK_memA: pinin/SDK/memA/ protein conserved region; InterPro: IPR006786 This conserved region is located adjacent and C-terminal to a N-terminal pinin/SKD domain IPR006787 from INTERPRO. Members of this family have very varied localisations within the eukaryotic cell. Pinin is known to localise at the desmosomes and is implicated in anchoring intermediate filaments to the desmosomal plaque []. SDK2/3 is a dynamically localised nuclear protein thought to be involved in modulation of alternative pre-mRNA splicing []. MemA is a tumour marker preferentially expressed in human melanoma cell lines. A common feature of the members of this family is that they may all participate in regulating protein-protein interactions [].
Probab=32.75 E-value=3.1e+02 Score=23.29 Aligned_cols=39 Identities=10% Similarity=0.336 Sum_probs=20.7
Q ss_pred HHHhhcccccCHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 018218 271 YIDLIGRYKLSPQARSKTEAARQKAAQEAYKELQNARQE 309 (359)
Q Consensus 271 liD~~~~~~L~~e~~~K~~k~R~~~~e~~~K~~~~~r~E 309 (359)
|+..+.++.--.+-.....+.|++++..+....++++++
T Consensus 16 LlGTL~kf~~e~~k~~~~~~rR~eie~rleek~~~e~e~ 54 (131)
T PF04696_consen 16 LLGTLQKFKKEEEKKTEQQKRRAEIEKRLEEKLKEEKEE 54 (131)
T ss_pred HHHHHHHHHHhHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555433333555667777777665544444433
No 57
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=32.60 E-value=2.1e+02 Score=22.79 Aligned_cols=45 Identities=20% Similarity=0.257 Sum_probs=24.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHhHHHHhcCCCHH
Q 018218 287 KTEAARQKAAQEAYKELQNARQEALQRKKA----DRKKMIEEADAKLSAE 332 (359)
Q Consensus 287 K~~k~R~~~~e~~~K~~~~~r~E~aq~kk~----Ek~r~~~e~~~~Lspe 332 (359)
|+.+.+.+ .+++.++.++...|.++.+.+ +.++.-+|...++|++
T Consensus 24 k~~ka~~~-~~kL~~en~qlk~Ek~~~~~qvkn~~vrqknee~~~~~sr~ 72 (87)
T PF10883_consen 24 KVKKAKKQ-NAKLQKENEQLKTEKAVAETQVKNAKVRQKNEENTRRLSRD 72 (87)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCCHH
Confidence 34444444 455566666666665544443 3344456666777774
No 58
>PF06102 DUF947: Domain of unknown function (DUF947); InterPro: IPR009292 This is a family of eukaryotic proteins with unknown function.
Probab=32.16 E-value=1.9e+02 Score=25.77 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=14.5
Q ss_pred HHHhcCC-CHHHHHHHHHHHHHHHhh
Q 018218 323 EEADAKL-SAEAIRKKEAKERARQMK 347 (359)
Q Consensus 323 ~e~~~~L-speeQrK~eEKe~kr~~k 347 (359)
.++...| +.-+..|+.||.+++...
T Consensus 139 ~~kf~~lk~~~kl~K~lekkrKK~~~ 164 (168)
T PF06102_consen 139 KEKFKELKKSGKLDKYLEKKRKKNAS 164 (168)
T ss_pred HHHHHHHhccchHHHHHHHHHhhhcc
Confidence 4555566 555566666666655543
No 59
>PF09831 DUF2058: Uncharacterized protein conserved in bacteria (DUF2058); InterPro: IPR018636 This family, found in various prokaryotic proteins, has no known function.
Probab=32.11 E-value=1.7e+02 Score=26.51 Aligned_cols=25 Identities=32% Similarity=0.361 Sum_probs=15.6
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHhh
Q 018218 323 EEADAKLSAEAIRKKEAKERARQMK 347 (359)
Q Consensus 323 ~e~~~~LspeeQrK~eEKe~kr~~k 347 (359)
.|++..|+.+.+...+.|+.+.+.|
T Consensus 54 ~erdr~Ln~qr~~~~~~K~~~Aqik 78 (177)
T PF09831_consen 54 AERDRELNRQRQAEAERKEIQAQIK 78 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666665544
No 60
>PF14265 DUF4355: Domain of unknown function (DUF4355)
Probab=31.76 E-value=2.2e+02 Score=23.57 Aligned_cols=13 Identities=46% Similarity=0.337 Sum_probs=6.5
Q ss_pred HHHhcCCCHHHHH
Q 018218 323 EEADAKLSAEAIR 335 (359)
Q Consensus 323 ~e~~~~LspeeQr 335 (359)
.++.++||+++..
T Consensus 35 ~~~~~k~~~~ek~ 47 (125)
T PF14265_consen 35 AEKLAKMSAEEKA 47 (125)
T ss_pred HHHHHhcchhhHH
Confidence 3445556654433
No 61
>PRK11677 hypothetical protein; Provisional
Probab=31.08 E-value=46 Score=28.68 Aligned_cols=24 Identities=8% Similarity=0.175 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHHHHhhchhhHH
Q 018218 32 SLSALRFLIMFVINYFTGKRENEN 55 (359)
Q Consensus 32 E~~~~~~l~ly~i~y~~G~~~N~~ 55 (359)
.++++++++..++.|++|+..|.+
T Consensus 4 ~~a~i~livG~iiG~~~~R~~~~~ 27 (134)
T PRK11677 4 EYALIGLVVGIIIGAVAMRFGNRK 27 (134)
T ss_pred HHHHHHHHHHHHHHHHHHhhccch
Confidence 567788888888888888877755
No 62
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=30.98 E-value=1.8e+02 Score=19.89 Aligned_cols=30 Identities=27% Similarity=0.406 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 018218 289 EAARQKAAQEAYKELQNARQEALQRKKADR 318 (359)
Q Consensus 289 ~k~R~~~~e~~~K~~~~~r~E~aq~kk~Ek 318 (359)
++..++++++..|+.++..+|-..+-+.|-
T Consensus 6 e~~KqEIL~EvrkEl~K~K~EIIeA~~~eL 35 (40)
T PF08776_consen 6 ERLKQEILEEVRKELQKVKEEIIEAIRQEL 35 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566788888888888888888766655554
No 63
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.85 E-value=2.5e+02 Score=26.87 Aligned_cols=16 Identities=13% Similarity=0.407 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHhhch
Q 018218 36 LRFLIMFVINYFTGKR 51 (359)
Q Consensus 36 ~~~l~ly~i~y~~G~~ 51 (359)
+++|++++++|++-+.
T Consensus 11 a~llV~~i~l~l~~r~ 26 (299)
T KOG3054|consen 11 AALLVAVILLFLWKRR 26 (299)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3344445555554433
No 64
>KOG2856 consensus Adaptor protein PACSIN [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=30.56 E-value=1.9e+02 Score=29.30 Aligned_cols=19 Identities=26% Similarity=0.436 Sum_probs=15.2
Q ss_pred HhcCCCHHHHHHHHHHHHH
Q 018218 325 ADAKLSAEAIRKKEAKERA 343 (359)
Q Consensus 325 ~~~~LspeeQrK~eEKe~k 343 (359)
-++.+|||+++|+.+|-.|
T Consensus 170 aDsSvspeq~kKlqdrveK 188 (472)
T KOG2856|consen 170 ADSSVSPEQLKKLQDRVEK 188 (472)
T ss_pred cCccCCHHHHHHHHHHHHH
Confidence 3478999999999977543
No 65
>COG3122 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.42 E-value=2.1e+02 Score=26.03 Aligned_cols=23 Identities=35% Similarity=0.329 Sum_probs=15.7
Q ss_pred HhcCCCHHHHHHHHHHHHHHHhh
Q 018218 325 ADAKLSAEAIRKKEAKERARQMK 347 (359)
Q Consensus 325 ~~~~LspeeQrK~eEKe~kr~~k 347 (359)
++..||..++.+.+.||.|-+-|
T Consensus 92 rdk~l~~qQk~~a~~ke~kAqvk 114 (215)
T COG3122 92 RDKQLSEQQKQAALAKEYKAQVK 114 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44457777777777787776654
No 66
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=30.27 E-value=2.7e+02 Score=21.92 Aligned_cols=15 Identities=13% Similarity=0.078 Sum_probs=11.7
Q ss_pred cCCCHHHHHHHHHHH
Q 018218 327 AKLSAEAIRKKEAKE 341 (359)
Q Consensus 327 ~~LspeeQrK~eEKe 341 (359)
-+|||++..-+...-
T Consensus 46 ~~mtp~eL~~~L~~~ 60 (83)
T PF14193_consen 46 MKMTPEELAAFLRAM 60 (83)
T ss_pred cCCCHHHHHHHHHHH
Confidence 589999988886553
No 67
>KOG4819 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.05 E-value=2e+02 Score=23.54 Aligned_cols=19 Identities=37% Similarity=0.510 Sum_probs=8.0
Q ss_pred HHHHHHHhHHHHHHhHHHH
Q 018218 307 RQEALQRKKADRKKMIEEA 325 (359)
Q Consensus 307 r~E~aq~kk~Ek~r~~~e~ 325 (359)
+||.++++.+|.++..+++
T Consensus 42 ~qeK~a~k~~Ere~~r~~R 60 (106)
T KOG4819|consen 42 RQEKAAQKAAEREKVRADR 60 (106)
T ss_pred HHHHHHHHHHHHHHHHHhH
Confidence 4444444444443333333
No 68
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=29.89 E-value=43 Score=28.24 Aligned_cols=22 Identities=14% Similarity=0.391 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHhhchhhHH
Q 018218 34 SALRFLIMFVINYFTGKRENEN 55 (359)
Q Consensus 34 ~~~~~l~ly~i~y~~G~~~N~~ 55 (359)
+++++|+++++++++.++..++
T Consensus 8 ii~~i~l~~~~~~~~~rRR~r~ 29 (130)
T PF12273_consen 8 IIVAILLFLFLFYCHNRRRRRR 29 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 4444555555566666555554
No 69
>KOG2441 consensus mRNA splicing factor/probable chromatin binding snw family nuclear protein [RNA processing and modification; Chromatin structure and dynamics]
Probab=29.85 E-value=2e+02 Score=29.37 Aligned_cols=15 Identities=7% Similarity=0.040 Sum_probs=7.9
Q ss_pred CCceEEeecchhhhh
Q 018218 191 ADELGVVSESKEVAG 205 (359)
Q Consensus 191 p~~~~vmSEs~e~~~ 205 (359)
|+.|+-++=|++...
T Consensus 171 ~s~YIrytpsqq~~~ 185 (506)
T KOG2441|consen 171 DSQYIRYTPSQQAGN 185 (506)
T ss_pred Ccceeeecccchhhh
Confidence 344555665555543
No 70
>COG1422 Predicted membrane protein [Function unknown]
Probab=29.65 E-value=1.7e+02 Score=27.04 Aligned_cols=16 Identities=0% Similarity=0.167 Sum_probs=6.2
Q ss_pred HhhcccccCHHHHHHh
Q 018218 273 DLIGRYKLSPQARSKT 288 (359)
Q Consensus 273 D~~~~~~L~~e~~~K~ 288 (359)
+.+..+...-|..++.
T Consensus 62 ~i~~~~liD~ekm~~~ 77 (201)
T COG1422 62 TILQKLLIDQEKMKEL 77 (201)
T ss_pred HHHHHHhccHHHHHHH
Confidence 3333334444333333
No 71
>COG4499 Predicted membrane protein [Function unknown]
Probab=29.55 E-value=1.7e+02 Score=29.76 Aligned_cols=20 Identities=20% Similarity=0.310 Sum_probs=12.2
Q ss_pred CcccCccchhhhHHHHHHHH
Q 018218 21 PFRRNPRRTRSSLSALRFLI 40 (359)
Q Consensus 21 ~~r~~~~~~~~E~~~~~~l~ 40 (359)
|+-..+..|+.|+=++++.+
T Consensus 136 Pye~tee~f~~~ykA~~~~~ 155 (434)
T COG4499 136 PYEMTEERFLKEYKALAIYA 155 (434)
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 34456777777776665544
No 72
>PRK12704 phosphodiesterase; Provisional
Probab=28.35 E-value=4.1e+02 Score=28.04 Aligned_cols=25 Identities=16% Similarity=0.128 Sum_probs=16.1
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHhh
Q 018218 323 EEADAKLSAEAIRKKEAKERARQMK 347 (359)
Q Consensus 323 ~e~~~~LspeeQrK~eEKe~kr~~k 347 (359)
-|+.++||.||-++..-++-+.+.+
T Consensus 144 l~~~a~lt~~ea~~~l~~~~~~~~~ 168 (520)
T PRK12704 144 LERISGLTAEEAKEILLEKVEEEAR 168 (520)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 4566999998887665444444433
No 73
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=28.20 E-value=2.3e+02 Score=27.59 Aligned_cols=13 Identities=8% Similarity=-0.087 Sum_probs=8.6
Q ss_pred CCCCceEEeecch
Q 018218 189 WVADELGVVSESK 201 (359)
Q Consensus 189 ~Lp~~~~vmSEs~ 201 (359)
++|-.|..+-|++
T Consensus 156 ~ip~kwf~lkedg 168 (445)
T KOG2891|consen 156 GIPCKWFALKEDG 168 (445)
T ss_pred CCcceeeeecccc
Confidence 5676777776654
No 74
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=28.02 E-value=29 Score=33.75 Aligned_cols=20 Identities=20% Similarity=0.619 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHhhchhhHH
Q 018218 36 LRFLIMFVINYFTGKRENEN 55 (359)
Q Consensus 36 ~~~l~ly~i~y~~G~~~N~~ 55 (359)
++++++.++.|++||++.+.
T Consensus 282 a~lvlivLiaYli~Rrr~~~ 301 (306)
T PF01299_consen 282 AGLVLIVLIAYLIGRRRSRA 301 (306)
T ss_pred HHHHHHHHHhheeEeccccc
Confidence 34566667799999988654
No 75
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=28.01 E-value=87 Score=34.01 Aligned_cols=12 Identities=17% Similarity=0.136 Sum_probs=7.5
Q ss_pred HHHHHhHHHHHH
Q 018218 283 QARSKTEAARQK 294 (359)
Q Consensus 283 e~~~K~~k~R~~ 294 (359)
+....++..|.+
T Consensus 515 ~~~~~~D~iRd~ 526 (651)
T PTZ00399 515 QLLQLCDKLRDE 526 (651)
T ss_pred hHHHHHHHHHHH
Confidence 445667777754
No 76
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=27.22 E-value=68 Score=22.08 Aligned_cols=21 Identities=24% Similarity=0.297 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHhhchhhH
Q 018218 34 SALRFLIMFVINYFTGKRENE 54 (359)
Q Consensus 34 ~~~~~l~ly~i~y~~G~~~N~ 54 (359)
++..++.+|++.||+.+..+.
T Consensus 20 ~~~igm~~~~~~~F~~k~~~~ 40 (42)
T PF11346_consen 20 VFTIGMGVFFIRYFIRKMKED 40 (42)
T ss_pred HHHHHHHHHHHHHHHHHHccc
Confidence 445567778888888887654
No 77
>PF13571 DUF4133: Domain of unknown function (DUF4133)
Probab=26.86 E-value=68 Score=26.08 Aligned_cols=31 Identities=26% Similarity=0.350 Sum_probs=24.6
Q ss_pred ccchhhhHHHHHHHHHHHHHHHhhchhhHHHHH
Q 018218 26 PRRTRSSLSALRFLIMFVINYFTGKRENENLAL 58 (359)
Q Consensus 26 ~~~~~~E~~~~~~l~ly~i~y~~G~~~N~~iA~ 58 (359)
.+-|++=+..+++++++++.|..|- |.-+.-
T Consensus 17 QYl~~faGgll~~~il~~iLYi~Gv--~~~ici 47 (96)
T PF13571_consen 17 QYLFYFAGGLLGLFILFVILYIAGV--NQWICI 47 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc--chhhhH
Confidence 4668888999999999999999994 444433
No 78
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=26.53 E-value=3.9e+02 Score=29.95 Aligned_cols=21 Identities=19% Similarity=0.346 Sum_probs=11.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHH
Q 018218 284 ARSKTEAARQKAAQEAYKELQ 304 (359)
Q Consensus 284 ~~~K~~k~R~~~~e~~~K~~~ 304 (359)
++..++..|+.+.++..++-+
T Consensus 758 f~e~vk~~rqs~~~e~~~~~e 778 (988)
T KOG2072|consen 758 FKEHVKGERQSEYEEKLKQFE 778 (988)
T ss_pred HHHHHhhhhHHHHHHHHHHHH
Confidence 345555566666555554433
No 79
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=25.70 E-value=60 Score=25.18 Aligned_cols=15 Identities=40% Similarity=0.437 Sum_probs=12.8
Q ss_pred CCHHHHHHHHHHHHH
Q 018218 329 LSAEAIRKKEAKERA 343 (359)
Q Consensus 329 LspeeQrK~eEKe~k 343 (359)
||.+|||.++|-|+.
T Consensus 3 LSe~E~r~L~eiEr~ 17 (82)
T PF11239_consen 3 LSEHEQRRLEEIERQ 17 (82)
T ss_pred CCHHHHHHHHHHHHH
Confidence 799999999988864
No 80
>KOG4709 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.43 E-value=2.1e+02 Score=26.31 Aligned_cols=37 Identities=41% Similarity=0.517 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHhHHHHh
Q 018218 290 AARQKAAQEAYKELQ-NARQEALQRKKADRKKMIEEAD 326 (359)
Q Consensus 290 k~R~~~~e~~~K~~~-~~r~E~aq~kk~Ek~r~~~e~~ 326 (359)
..|++..++.++++. ..+.|+-++.++|..++++|++
T Consensus 48 veRrK~Aqeqikeq~ReerielRk~~rqerkr~LeErl 85 (217)
T KOG4709|consen 48 VERRKAAQEQIKEQLREERIELRKERRQERKRMLEERL 85 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555554 3455655666777777777766
No 81
>KOG3190 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.69 E-value=3.9e+02 Score=25.35 Aligned_cols=11 Identities=18% Similarity=0.317 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q 018218 335 RKKEAKERARQ 345 (359)
Q Consensus 335 rK~eEKe~kr~ 345 (359)
-||.++.|+|.
T Consensus 231 dkylerKRkk~ 241 (256)
T KOG3190|consen 231 DKYLERKRKKR 241 (256)
T ss_pred HHHHHHHHHHh
Confidence 34444444443
No 82
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=23.94 E-value=33 Score=27.94 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHhhchhhHH
Q 018218 33 LSALRFLIMFVINYFTGKRENEN 55 (359)
Q Consensus 33 ~~~~~~l~ly~i~y~~G~~~N~~ 55 (359)
.++++++++|++.||+=-+..++
T Consensus 70 s~v~IlVily~IyYFVILRer~~ 92 (101)
T PF06024_consen 70 SFVCILVILYAIYYFVILRERQK 92 (101)
T ss_pred HHHHHHHHHhhheEEEEEecccc
Confidence 34555667777778776555443
No 83
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=23.83 E-value=1.1e+02 Score=32.11 Aligned_cols=7 Identities=14% Similarity=0.292 Sum_probs=2.9
Q ss_pred hcccccc
Q 018218 72 EKNFSLL 78 (359)
Q Consensus 72 ~~~Fa~V 78 (359)
.+-|-+|
T Consensus 131 ksafl~v 137 (708)
T KOG3654|consen 131 KSAFLQV 137 (708)
T ss_pred hhheeee
Confidence 3344444
No 84
>PRK10328 DNA binding protein, nucleoid-associated; Provisional
Probab=23.33 E-value=4.2e+02 Score=22.78 Aligned_cols=8 Identities=13% Similarity=0.376 Sum_probs=6.8
Q ss_pred cCCCHHHH
Q 018218 327 AKLSAEAI 334 (359)
Q Consensus 327 ~~LspeeQ 334 (359)
.++||++.
T Consensus 68 ~Git~eeL 75 (134)
T PRK10328 68 DGINPEEL 75 (134)
T ss_pred hCCCHHHH
Confidence 68999888
No 85
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=22.74 E-value=6.1e+02 Score=26.75 Aligned_cols=22 Identities=18% Similarity=0.086 Sum_probs=14.3
Q ss_pred HHHhcCCCHHHHHHHHHHHHHH
Q 018218 323 EEADAKLSAEAIRKKEAKERAR 344 (359)
Q Consensus 323 ~e~~~~LspeeQrK~eEKe~kr 344 (359)
-|+.++||.||-|...-++-+.
T Consensus 138 le~~a~lt~~eak~~l~~~~~~ 159 (514)
T TIGR03319 138 LERISGLTQEEAKEILLEEVEE 159 (514)
T ss_pred HHHHhCCCHHHHHHHHHHHHHH
Confidence 4567999998877655333333
No 86
>PRK11546 zraP zinc resistance protein; Provisional
Probab=22.70 E-value=2.4e+02 Score=24.66 Aligned_cols=35 Identities=14% Similarity=0.237 Sum_probs=23.1
Q ss_pred ccCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 018218 279 KLSPQARSKTEAARQKAAQEAYKELQNARQEALQRKKADR 318 (359)
Q Consensus 279 ~L~~e~~~K~~k~R~~~~e~~~K~~~~~r~E~aq~kk~Ek 318 (359)
.||||...++++.+ +++..++...|++. ..|++|-
T Consensus 43 ~LT~EQQa~~q~I~----~~f~~~t~~LRqqL-~aKr~EL 77 (143)
T PRK11546 43 PLTTEQQAAWQKIH----NDFYAQTSALRQQL-VSKRYEY 77 (143)
T ss_pred cCCHHHHHHHHHHH----HHHHHHHHHHHHHH-HHHHHHH
Confidence 59999999999999 55555555555443 3344443
No 87
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=22.34 E-value=60 Score=27.54 Aligned_cols=22 Identities=14% Similarity=0.507 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHhhchhhHH
Q 018218 34 SALRFLIMFVINYFTGKRENEN 55 (359)
Q Consensus 34 ~~~~~l~ly~i~y~~G~~~N~~ 55 (359)
+++++++.++|.|++|+..+.+
T Consensus 2 ~~i~lvvG~iiG~~~~r~~~~~ 23 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLTSSN 23 (128)
T ss_pred hHHHHHHHHHHHHHHHHHhccc
Confidence 3455555555555555555444
No 88
>PF15295 CCDC50_N: Coiled-coil domain-containing protein 50 N-terminus
Probab=22.15 E-value=5.1e+02 Score=22.31 Aligned_cols=28 Identities=25% Similarity=0.482 Sum_probs=16.7
Q ss_pred HHHHhHHHHhcCCCHHHHHHHHHHHHHHHhhh
Q 018218 317 DRKKMIEEADAKLSAEAIRKKEAKERARQMKK 348 (359)
Q Consensus 317 Ek~r~~~e~~~~LspeeQrK~eEKe~kr~~kK 348 (359)
++++..++++ .+=.+++.|+|.++.-|+
T Consensus 101 e~~r~~Ee~d----e~iA~~Lqe~e~~~~~r~ 128 (132)
T PF15295_consen 101 EEQRQQEEED----EEIARRLQEEERQEERRR 128 (132)
T ss_pred HHHHHHHHhh----HHHHHHHHHHHHHHHHHH
Confidence 3334444555 555678888887776443
No 89
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=22.11 E-value=4.6e+02 Score=22.58 Aligned_cols=8 Identities=0% Similarity=0.248 Sum_probs=6.7
Q ss_pred cCCCHHHH
Q 018218 327 AKLSAEAI 334 (359)
Q Consensus 327 ~~LspeeQ 334 (359)
.++||++.
T Consensus 68 ~Gis~~eL 75 (135)
T PRK10947 68 DGIDPNEL 75 (135)
T ss_pred cCCCHHHH
Confidence 58999887
No 90
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=21.92 E-value=3.3e+02 Score=27.09 Aligned_cols=6 Identities=50% Similarity=0.340 Sum_probs=2.3
Q ss_pred HHHHHH
Q 018218 334 IRKKEA 339 (359)
Q Consensus 334 QrK~eE 339 (359)
+.|.|+
T Consensus 184 kaKAe~ 189 (387)
T COG3064 184 KAKAEA 189 (387)
T ss_pred HHHHHH
Confidence 333333
No 91
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=21.80 E-value=5.4e+02 Score=24.57 Aligned_cols=21 Identities=19% Similarity=0.243 Sum_probs=16.5
Q ss_pred HhcCCCHHHHHHHHHHHHHHH
Q 018218 325 ADAKLSAEAIRKKEAKERARQ 345 (359)
Q Consensus 325 ~~~~LspeeQrK~eEKe~kr~ 345 (359)
.++.+||++++|...|-.+..
T Consensus 161 ~d~~~s~~q~eK~~~k~~k~~ 181 (258)
T cd07680 161 AEQSVTPEQQKKLQDKVDKCK 181 (258)
T ss_pred ccCCCCHHHHHHHHHHHHHHH
Confidence 357899999999987766654
No 92
>PF15402 Spc7_N: N-terminus of kinetochore NMS complex subunit Spc7
Probab=21.56 E-value=85 Score=35.40 Aligned_cols=19 Identities=26% Similarity=0.456 Sum_probs=10.6
Q ss_pred HHHHHHHhHHHHHHhHHHH
Q 018218 307 RQEALQRKKADRKKMIEEA 325 (359)
Q Consensus 307 r~E~aq~kk~Ek~r~~~e~ 325 (359)
+|++|+.+|+|++|.+.||
T Consensus 142 eqqaAarEREe~er~e~ek 160 (927)
T PF15402_consen 142 EQQAAAREREERERAEREK 160 (927)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455666666666655443
No 93
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=20.91 E-value=5.1e+02 Score=28.12 Aligned_cols=15 Identities=33% Similarity=0.348 Sum_probs=9.1
Q ss_pred eEEEEEEecCccCHH
Q 018218 109 GLLATMELKSRHDLI 123 (359)
Q Consensus 109 ~~~v~l~L~kRqDl~ 123 (359)
-+-.++.+.-|-|+=
T Consensus 652 ~lr~~Fe~eer~d~e 666 (1077)
T COG5192 652 ELRGNFELEERGDPE 666 (1077)
T ss_pred hhhcceeehhccCcc
Confidence 345666666666664
No 94
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=20.69 E-value=4.2e+02 Score=20.70 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=16.6
Q ss_pred cccccCHHHHHHhHHHHHHHHHHH
Q 018218 276 GRYKLSPQARSKTEAARQKAAQEA 299 (359)
Q Consensus 276 ~~~~L~~e~~~K~~k~R~~~~e~~ 299 (359)
..+.||++.+.++...+.+...+.
T Consensus 38 ~~l~Lt~eQ~~~l~~~~~~~~~~~ 61 (125)
T PF13801_consen 38 DMLNLTPEQQAKLRALMDEFRQEM 61 (125)
T ss_dssp HHS-TTHHHHHHHHHHHHHHHHHH
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHH
Confidence 347899999999988885544433
No 95
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=20.54 E-value=2.3e+02 Score=29.87 Aligned_cols=15 Identities=33% Similarity=0.576 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHh
Q 018218 332 EAIRKKEAKERARQM 346 (359)
Q Consensus 332 eeQrK~eEKe~kr~~ 346 (359)
+|.+|.+||++--+|
T Consensus 528 kelrkaeekqk~ae~ 542 (591)
T KOG2505|consen 528 KELRKAEEKQKYAEM 542 (591)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555444333
No 96
>PLN02316 synthase/transferase
Probab=20.10 E-value=2.5e+02 Score=32.31 Aligned_cols=13 Identities=31% Similarity=0.353 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHH
Q 018218 332 EAIRKKEAKERAR 344 (359)
Q Consensus 332 eeQrK~eEKe~kr 344 (359)
+.|.|.|-+++++
T Consensus 289 ~a~akae~~~~~~ 301 (1036)
T PLN02316 289 RAQAKAEVEKRRE 301 (1036)
T ss_pred hhhhhHHHHHHHH
Confidence 4566776444433
Done!