Query 018218
Match_columns 359
No_of_seqs 111 out of 207
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 11:47:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018218.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018218hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3itf_A Periplasmic adaptor pro 85.9 9.4 0.00032 32.1 11.2 23 326-348 116-138 (145)
2 3o39_A Periplasmic protein rel 85.2 3 0.0001 33.4 7.5 24 321-344 83-106 (108)
3 1lbj_A Motilin; A-helix, B-tur 67.1 4.7 0.00016 23.6 2.6 20 330-349 6-25 (26)
4 2q2f_A Selenoprotein S; anti-p 66.7 39 0.0013 25.7 8.4 10 331-340 68-77 (89)
5 3oeo_A Spheroplast protein Y; 58.9 9.3 0.00032 31.7 4.2 25 325-349 103-127 (138)
6 2xrh_A Protein HP0721; unknown 53.6 63 0.0022 25.3 7.8 31 321-351 60-90 (100)
7 3nr7_A DNA-binding protein H-N 44.6 68 0.0023 24.4 6.6 9 327-335 71-79 (86)
8 3lay_A Zinc resistance-associa 43.4 74 0.0025 27.4 7.5 22 278-299 66-87 (175)
9 2efk_A CDC42-interacting prote 32.4 2.7E+02 0.0091 24.8 10.1 20 326-345 159-178 (301)
10 2rdd_B UPF0092 membrane protei 30.3 70 0.0024 20.1 3.9 26 35-60 6-31 (37)
11 3haj_A Human pacsin2 F-BAR; pa 28.6 2.2E+02 0.0076 27.9 9.4 20 326-345 179-198 (486)
12 4efa_E V-type proton ATPase su 24.2 3.5E+02 0.012 23.6 9.1 65 279-349 23-87 (233)
13 3sjd_D Golgi to ER traffic pro 21.7 82 0.0028 21.0 3.0 12 327-338 12-23 (46)
14 3zs9_C Golgi to ER traffic pro 21.1 84 0.0029 20.2 2.9 12 327-338 2-13 (38)
No 1
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=85.87 E-value=9.4 Score=32.07 Aligned_cols=23 Identities=17% Similarity=0.065 Sum_probs=18.8
Q ss_pred hcCCCHHHHHHHHHHHHHHHhhh
Q 018218 326 DAKLSAEAIRKKEAKERARQMKK 348 (359)
Q Consensus 326 ~~~LspeeQrK~eEKe~kr~~kK 348 (359)
..-||||++.++.|...+|-.+.
T Consensus 116 y~vLTPEQk~ql~e~~~~r~~~~ 138 (145)
T 3itf_A 116 YRLLTPEQQAVLNEKHQQRMEQL 138 (145)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHHT
T ss_pred HhhCCHHHHHHHHHHHHHHHHHH
Confidence 36799999999999988876553
No 2
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=85.25 E-value=3 Score=33.41 Aligned_cols=24 Identities=17% Similarity=0.092 Sum_probs=18.0
Q ss_pred hHHHHhcCCCHHHHHHHHHHHHHH
Q 018218 321 MIEEADAKLSAEAIRKKEAKERAR 344 (359)
Q Consensus 321 ~~~e~~~~LspeeQrK~eEKe~kr 344 (359)
...+=..-||||++.+|.+.-.+|
T Consensus 83 ~~~qmy~lLTPEQk~q~~~~~~~r 106 (108)
T 3o39_A 83 TQNKIYNILTPEQKKQFNANFEKR 106 (108)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHS
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhh
Confidence 334445789999999998876654
No 3
>1lbj_A Motilin; A-helix, B-turn of type I, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=67.08 E-value=4.7 Score=23.61 Aligned_cols=20 Identities=15% Similarity=0.263 Sum_probs=14.1
Q ss_pred CHHHHHHHHHHHHHHHhhhh
Q 018218 330 SAEAIRKKEAKERARQMKKA 349 (359)
Q Consensus 330 speeQrK~eEKe~kr~~kK~ 349 (359)
+..+.+|..||||.|-+||+
T Consensus 6 t~selqr~qEkErNkgqkKs 25 (26)
T 1lbj_A 6 TYGELQRMQEKERNKGQXXX 25 (26)
T ss_dssp CHHHHHHHHHHHHHHHC---
T ss_pred eHHHHHHHHHHHhccCCccC
Confidence 45677899999999888875
No 4
>2q2f_A Selenoprotein S; anti-parallel coiled-coil, endoplasmic reticulum, membrane, selenocysteine, transmembrane, structural genomics; HET: MSE; 1.50A {Homo sapiens}
Probab=66.73 E-value=39 Score=25.74 Aligned_cols=10 Identities=20% Similarity=0.418 Sum_probs=5.9
Q ss_pred HHHHHHHHHH
Q 018218 331 AEAIRKKEAK 340 (359)
Q Consensus 331 peeQrK~eEK 340 (359)
.|+|+++||-
T Consensus 68 keKQkqlEEe 77 (89)
T 2q2f_A 68 KEKLKQLEEE 77 (89)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5666666544
No 5
>3oeo_A Spheroplast protein Y; LTXXQ, extracytoplasmic stress response-related, signaling P; 2.70A {Escherichia coli}
Probab=58.92 E-value=9.3 Score=31.69 Aligned_cols=25 Identities=16% Similarity=0.121 Sum_probs=15.2
Q ss_pred HhcCCCHHHHHHHHHHHHHHHhhhh
Q 018218 325 ADAKLSAEAIRKKEAKERARQMKKA 349 (359)
Q Consensus 325 ~~~~LspeeQrK~eEKe~kr~~kK~ 349 (359)
=..-||||++.++.+.-.+|..+..
T Consensus 103 ~~~vLTPEQr~q~~~~~~kr~~~~~ 127 (138)
T 3oeo_A 103 IYNILTPEQKKQFNANFEKRLTERP 127 (138)
T ss_dssp HHTTSCHHHHHHHHHHTC-------
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHhh
Confidence 3377999999999988776655543
No 6
>2xrh_A Protein HP0721; unknown function; 1.50A {Helicobacter pylori}
Probab=53.64 E-value=63 Score=25.29 Aligned_cols=31 Identities=6% Similarity=0.126 Sum_probs=21.8
Q ss_pred hHHHHhcCCCHHHHHHHHHHHHHHHhhhhCC
Q 018218 321 MIEEADAKLSAEAIRKKEAKERARQMKKAVP 351 (359)
Q Consensus 321 ~~~e~~~~LspeeQrK~eEKe~kr~~kK~~~ 351 (359)
..++..++||+++.+++.+.=++--+++.|.
T Consensus 60 ~~~kN~~kMS~ke~~~~r~aI~eal~k~~~~ 90 (100)
T 2xrh_A 60 YATKNTDKMTVADFEARQKAVKEALKKGNME 90 (100)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHhchh
Confidence 4456789999999999866655555555544
No 7
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=44.57 E-value=68 Score=24.37 Aligned_cols=9 Identities=0% Similarity=0.139 Sum_probs=6.7
Q ss_pred cCCCHHHHH
Q 018218 327 AKLSAEAIR 335 (359)
Q Consensus 327 ~~LspeeQr 335 (359)
.++||++.-
T Consensus 71 ~GI~~eeL~ 79 (86)
T 3nr7_A 71 DGIDPNELL 79 (86)
T ss_dssp TCCCHHHHH
T ss_pred cCCCHHHHH
Confidence 688998753
No 8
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=43.35 E-value=74 Score=27.37 Aligned_cols=22 Identities=5% Similarity=0.092 Sum_probs=16.1
Q ss_pred cccCHHHHHHhHHHHHHHHHHH
Q 018218 278 YKLSPQARSKTEAARQKAAQEA 299 (359)
Q Consensus 278 ~~L~~e~~~K~~k~R~~~~e~~ 299 (359)
+.||+|.+.+.++.|++...+.
T Consensus 66 LnLT~EQq~ql~~I~~e~r~~~ 87 (175)
T 3lay_A 66 SPLTTEQQATAQKIYDDYYTQT 87 (175)
T ss_dssp --CCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHH
Confidence 6899999999999995555443
No 9
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=32.38 E-value=2.7e+02 Score=24.81 Aligned_cols=20 Identities=15% Similarity=0.292 Sum_probs=12.8
Q ss_pred hcCCCHHHHHHHHHHHHHHH
Q 018218 326 DAKLSAEAIRKKEAKERARQ 345 (359)
Q Consensus 326 ~~~LspeeQrK~eEKe~kr~ 345 (359)
+..+|+.+..|...|..+..
T Consensus 159 ~~~~s~~~~eK~~~k~~~~~ 178 (301)
T 2efk_A 159 DINATKADVEKAKQQAHLRS 178 (301)
T ss_dssp CTTSCHHHHHHHHHHHHHHH
T ss_pred CcccCHHHHHHHHHHHHHHH
Confidence 35678877777766655443
No 10
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=30.33 E-value=70 Score=20.13 Aligned_cols=26 Identities=19% Similarity=0.232 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHhhchhhHHHHHHH
Q 018218 35 ALRFLIMFVINYFTGKRENENLALAW 60 (359)
Q Consensus 35 ~~~~l~ly~i~y~~G~~~N~~iA~~w 60 (359)
++.++++++++||.--+-+++.+++.
T Consensus 6 ~l~~v~~~~ifYFl~iRPQ~Kr~K~~ 31 (37)
T 2rdd_B 6 ILMLVVFGLIFYFMILRPQQKRTKEH 31 (37)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34456667788888888888888775
No 11
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=28.59 E-value=2.2e+02 Score=27.91 Aligned_cols=20 Identities=25% Similarity=0.360 Sum_probs=14.1
Q ss_pred hcCCCHHHHHHHHHHHHHHH
Q 018218 326 DAKLSAEAIRKKEAKERARQ 345 (359)
Q Consensus 326 ~~~LspeeQrK~eEKe~kr~ 345 (359)
+..+++.+..|...|..+..
T Consensus 179 d~~~t~k~~eK~~~k~~k~~ 198 (486)
T 3haj_A 179 DPSLNPEQLKKLQDKIEKCK 198 (486)
T ss_dssp CCCSCSHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHH
Confidence 45688888888877765544
No 12
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=24.24 E-value=3.5e+02 Score=23.55 Aligned_cols=65 Identities=18% Similarity=0.129 Sum_probs=0.0
Q ss_pred ccCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHHhhhh
Q 018218 279 KLSPQARSKTEAARQKAAQEAYKELQNARQEALQRKKADRKKMIEEADAKLSAEAIRKKEAKERARQMKKA 349 (359)
Q Consensus 279 ~L~~e~~~K~~k~R~~~~e~~~K~~~~~r~E~aq~kk~Ek~r~~~e~~~~LspeeQrK~eEKe~kr~~kK~ 349 (359)
.+..|+..|+...+.+..+++..+..+..+++-....++-++.+.+-. .+++...-...-+.|.+
T Consensus 23 fI~qEA~eKA~EI~~kAeeE~~~ek~~~v~~~~~~i~~~~ek~~kq~e------~~~~i~~S~~~~~aR~~ 87 (233)
T 4efa_E 23 FIRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLKKAM------LSQQITKSTIANKMRLK 87 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
No 13
>3sjd_D Golgi to ER traffic protein 2; ATPase, receptor complex, TA-protein biogenesis, GET pathway hydrolase-transport protein complex; HET: ADP; 4.60A {Saccharomyces cerevisiae}
Probab=21.67 E-value=82 Score=20.98 Aligned_cols=12 Identities=17% Similarity=0.230 Sum_probs=6.9
Q ss_pred cCCCHHHHHHHH
Q 018218 327 AKLSAEAIRKKE 338 (359)
Q Consensus 327 ~~LspeeQrK~e 338 (359)
+.||++||+++.
T Consensus 12 ~~lsa~EkaRLr 23 (46)
T 3sjd_D 12 SELTEAEKRRLL 23 (46)
T ss_dssp ---CHHHHHHHH
T ss_pred ccccHHHHHHHH
Confidence 467888888773
No 14
>3zs9_C Golgi to ER traffic protein 2; hydrolase-transport protein complex, membrane protein, targe factor; HET: ADP; 2.10A {Saccharomyces cerevisiae}
Probab=21.13 E-value=84 Score=20.19 Aligned_cols=12 Identities=17% Similarity=0.230 Sum_probs=8.1
Q ss_pred cCCCHHHHHHHH
Q 018218 327 AKLSAEAIRKKE 338 (359)
Q Consensus 327 ~~LspeeQrK~e 338 (359)
+.||++||+++.
T Consensus 2 sels~~ekaRlr 13 (38)
T 3zs9_C 2 SELTEAEKRRLL 13 (38)
T ss_dssp --CCHHHHHHHH
T ss_pred cccCHHHHHHHH
Confidence 468888888883
Done!