Query 018218
Match_columns 359
No_of_seqs 111 out of 207
Neff 6.7
Searched_HMMs 13730
Date Mon Mar 25 11:47:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018218.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018218hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1b0nb_ a.34.1.1 (B:) SinI ant 37.0 12 0.00089 20.9 2.4 16 323-338 13-28 (31)
2 d1vpma_ d.38.1.1 (A:) Acyl-CoA 34.4 8.4 0.00061 30.3 2.1 6 229-234 53-58 (155)
3 d2axtl1 f.23.31.1 (L:1-37) Pho 19.9 61 0.0044 18.9 3.5 33 16-48 4-36 (37)
4 d2lefa_ a.21.1.1 (A:) Lymphoid 14.4 92 0.0067 21.1 4.2 24 320-343 35-58 (86)
5 d1q9ua_ d.129.7.1 (A:) Unnamed 13.7 68 0.005 23.3 3.5 28 151-178 53-80 (128)
6 d1eh1a_ d.67.3.1 (A:) Ribosome 12.6 3E+02 0.022 21.4 8.7 9 248-256 99-107 (185)
7 d2fgea3 d.185.1.1 (A:272-539) 11.5 1.8E+02 0.013 23.9 6.0 18 323-340 229-246 (268)
8 d1ge9a_ d.67.3.1 (A:) Ribosome 11.4 3.3E+02 0.024 21.1 8.5 11 328-338 146-156 (184)
9 d1xmec1 f.23.9.1 (C:2-34) Bact 11.1 98 0.0071 17.3 2.6 16 35-50 10-25 (33)
10 d2cr5a1 d.15.1.2 (A:8-103) UBX 9.6 1.2E+02 0.009 20.7 3.6 16 241-256 12-27 (96)
No 1
>d1b0nb_ a.34.1.1 (B:) SinI anti-repressor {Bacillus subtilis [TaxId: 1423]}
Probab=37.04 E-value=12 Score=20.87 Aligned_cols=16 Identities=44% Similarity=0.522 Sum_probs=12.7
Q ss_pred HHHhcCCCHHHHHHHH
Q 018218 323 EEADAKLSAEAIRKKE 338 (359)
Q Consensus 323 ~e~~~~LspeeQrK~e 338 (359)
+.+.+..||||-|||.
T Consensus 13 eakeanispeeirkyl 28 (31)
T d1b0nb_ 13 EAKEANISPEEIRKYL 28 (31)
T ss_dssp HHHHTTCCHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHH
Confidence 3355789999999985
No 2
>d1vpma_ d.38.1.1 (A:) Acyl-CoA hydrolase BH0798 {Bacillus halodurans [TaxId: 86665]}
Probab=34.42 E-value=8.4 Score=30.32 Aligned_cols=6 Identities=0% Similarity=0.268 Sum_probs=2.2
Q ss_pred eeEEEe
Q 018218 229 FISMHF 234 (359)
Q Consensus 229 l~~i~i 234 (359)
+....+
T Consensus 53 ~vt~~v 58 (155)
T d1vpma_ 53 VVTASI 58 (155)
T ss_dssp EEEEEE
T ss_pred ceEEEE
Confidence 333333
No 3
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=19.91 E-value=61 Score=18.94 Aligned_cols=33 Identities=24% Similarity=0.346 Sum_probs=21.4
Q ss_pred CCCCCCcccCccchhhhHHHHHHHHHHHHHHHh
Q 018218 16 NPKTWPFRRNPRRTRSSLSALRFLIMFVINYFT 48 (359)
Q Consensus 16 ~~~~~~~r~~~~~~~~E~~~~~~l~ly~i~y~~ 48 (359)
||+..+.-.+-.+-|+-.+.+.++.+.+.+||.
T Consensus 4 npn~q~veLNrtsLy~GlLlifvl~vLFssYfF 36 (37)
T d2axtl1 4 NPNRQPVELNRTSLYLGLLLILVLALLFSSYFF 36 (37)
T ss_dssp CSSCCCBCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCccccchhhHHHHHHHHHHHHHHHHHHhc
Confidence 555666655666666666666666666777764
No 4
>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=14.45 E-value=92 Score=21.15 Aligned_cols=24 Identities=21% Similarity=0.095 Sum_probs=18.0
Q ss_pred HhHHHHhcCCCHHHHHHHHHHHHH
Q 018218 320 KMIEEADAKLSAEAIRKKEAKERA 343 (359)
Q Consensus 320 r~~~e~~~~LspeeQrK~eEKe~k 343 (359)
++..+....||++|.++|+++-.+
T Consensus 35 k~lg~~Wk~ls~~eK~~y~~~A~~ 58 (86)
T d2lefa_ 35 QILGRRWHALSREEQAKYYELARK 58 (86)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHH
Confidence 445667789999999999865443
No 5
>d1q9ua_ d.129.7.1 (A:) Unnamed hypothetical protein {Bacillus stearothermophilus [TaxId: 1422]}
Probab=13.70 E-value=68 Score=23.27 Aligned_cols=28 Identities=18% Similarity=0.121 Sum_probs=24.9
Q ss_pred eEEEEEehHHHHHHHHhhhhhhhhhccc
Q 018218 151 VVFAVAKKKVAKAMQKEVRDLNRFTGGL 178 (359)
Q Consensus 151 fV~AIv~K~~~~~~r~~~~DL~~f~~~~ 178 (359)
-|+.+||.+....+.+..+++..|+...
T Consensus 53 ~i~~~cnp~~a~~~l~~~p~~g~~lPcr 80 (128)
T d1q9ua_ 53 VILEVCNPQEAARVLNENLLVGYFLPCK 80 (128)
T ss_dssp EEEEEECHHHHHHHHHHCGGGGGGCSEE
T ss_pred EEEEECCHHHHHHHHHhChHHHhhcCeE
Confidence 4899999999999999999988887755
No 6
>d1eh1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermus thermophilus [TaxId: 274]}
Probab=12.65 E-value=3e+02 Score=21.40 Aligned_cols=9 Identities=11% Similarity=0.357 Sum_probs=4.9
Q ss_pred EEEEcCCCC
Q 018218 248 FKFALPDAN 256 (359)
Q Consensus 248 ~~~~lP~~~ 256 (359)
+++.+|+-.
T Consensus 99 Irv~iP~lT 107 (185)
T d1eh1a_ 99 LYINIPPLT 107 (185)
T ss_dssp EEEECCCCC
T ss_pred eeccCCCCc
Confidence 444567654
No 7
>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=11.54 E-value=1.8e+02 Score=23.91 Aligned_cols=18 Identities=17% Similarity=0.285 Sum_probs=11.4
Q ss_pred HHHhcCCCHHHHHHHHHH
Q 018218 323 EEADAKLSAEAIRKKEAK 340 (359)
Q Consensus 323 ~e~~~~LspeeQrK~eEK 340 (359)
++..++||+++..++.+.
T Consensus 229 ~~~~~~l~~e~~~~l~~~ 246 (268)
T d2fgea3 229 EKVKAAMTEEDLAELARA 246 (268)
T ss_dssp HHHHHTSCHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHH
Confidence 344467888777776443
No 8
>d1ge9a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Aquifex aeolicus [TaxId: 63363]}
Probab=11.35 E-value=3.3e+02 Score=21.12 Aligned_cols=11 Identities=9% Similarity=0.205 Sum_probs=6.0
Q ss_pred CCCHHHHHHHH
Q 018218 328 KLSAEAIRKKE 338 (359)
Q Consensus 328 ~LspeeQrK~e 338 (359)
++|.++.++++
T Consensus 146 ~iseD~~k~~~ 156 (184)
T d1ge9a_ 146 GISEDEKKRAL 156 (184)
T ss_dssp TCCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 45555555554
No 9
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=11.05 E-value=98 Score=17.32 Aligned_cols=16 Identities=13% Similarity=0.434 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHhhc
Q 018218 35 ALRFLIMFVINYFTGK 50 (359)
Q Consensus 35 ~~~~l~ly~i~y~~G~ 50 (359)
.++++.+.++.|+.|-
T Consensus 10 vi~il~l~ilvfw~gv 25 (33)
T d1xmec1 10 VILVLTLTILVFWLGV 25 (33)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555566666653
No 10
>d2cr5a1 d.15.1.2 (A:8-103) UBX domain-containing protein 6 (Reproduction 8) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.56 E-value=1.2e+02 Score=20.72 Aligned_cols=16 Identities=13% Similarity=0.326 Sum_probs=13.1
Q ss_pred CcceEEEEEEEcCCCC
Q 018218 241 THRKMLLFKFALPDAN 256 (359)
Q Consensus 241 ~~~k~l~~~~~lP~~~ 256 (359)
.....+.|+|++|.+.
T Consensus 12 ~~~~~~~i~iRlPdG~ 27 (96)
T d2cr5a1 12 TAEEVVTVALRCPNGR 27 (96)
T ss_dssp SCSSEEEEEEECTTSC
T ss_pred CCCCeEEEEEECCCCC
Confidence 3567899999999875
Done!