Query 018219
Match_columns 359
No_of_seqs 188 out of 1223
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 11:48:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018219.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018219hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 99.1 6.2E-11 2.1E-15 93.4 4.2 71 257-327 34-105 (137)
2 3b5d_A Multidrug transporter E 98.6 3.8E-07 1.3E-11 69.1 11.3 69 76-150 34-103 (110)
3 2i68_A Protein EMRE; transmemb 98.6 7.2E-08 2.4E-12 75.8 6.7 70 76-151 34-104 (137)
4 3b5d_A Multidrug transporter E 98.6 6.2E-08 2.1E-12 73.5 6.2 69 258-326 35-104 (110)
5 1pw4_A Glycerol-3-phosphate tr 42.9 1.8E+02 0.0062 25.8 20.2 17 109-125 196-212 (451)
6 3l1l_A Arginine/agmatine antip 35.3 74 0.0025 28.9 6.8 45 287-331 388-432 (445)
7 2l2t_A Receptor tyrosine-prote 22.0 34 0.0011 20.5 1.1 12 315-326 25-36 (44)
8 3rko_J NADH-quinone oxidoreduc 20.9 3.2E+02 0.011 21.8 11.7 25 294-318 127-151 (184)
9 2zxe_G FXYD10, phospholemman-l 18.5 33 0.0011 22.8 0.6 19 310-328 25-43 (74)
10 2jo1_A Phospholemman; FXYD1, N 9.8 39 0.0013 22.3 -1.0 36 310-345 22-57 (72)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=99.08 E-value=6.2e-11 Score=93.35 Aligned_cols=71 Identities=20% Similarity=0.291 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHhccCcceeeec-hhhHHHHHHHHHHHHhcCCCcchhhHhHHHHhhhhheeeecc
Q 018219 257 YCGVLNSALVYYLQTWCISVKGPVFTAMF-IPVQLVIVALFSIIAFAERLHLSSLIGAFFIVAGLYCVLWGK 327 (359)
Q Consensus 257 ~~g~~~~~~~~~l~~~a~~~~~~~~~s~~-~~~~pv~a~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~~~ 327 (359)
.++++++++++.++.+++++.+++.+..+ ..+.|+++.+++++++||++++.+++|+++|++|+++....+
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 35667889999999999999999999998 899999999999999999999999999999999999987544
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.63 E-value=3.8e-07 Score=69.10 Aligned_cols=69 Identities=16% Similarity=0.281 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHHhhccCchhhhhh-cchhHHHHHHHHHHhcccccccccccccccchhHHHHHHHHHHHhh
Q 018219 76 VLALLGATIHINVYYIGMDYVSPTVATAL-GNVVPSFTFLLAFLLGMEKVKITSGRGRAKVLGTIICVGGSLLFTL 150 (359)
Q Consensus 76 ~~g~~~~~~~~~~~~~al~~~~~~~~~~l-~~~~pi~~~ila~l~~~e~~~~~~~~~~~~~ig~~l~~~Gv~l~~~ 150 (359)
+.+.+...+++.++..++++.|.+.+..+ ..+.|+++++++++++||++++.+ ++|+.+.++|++++..
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~------~~Gi~lIi~Gv~~l~~ 103 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPA------IIGMMLICAGVLIINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHhc
Confidence 46666668999999999999999999999 899999999999999999999999 9999999999999864
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.60 E-value=7.2e-08 Score=75.79 Aligned_cols=70 Identities=16% Similarity=0.274 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHhhccCchhhhhh-cchhHHHHHHHHHHhcccccccccccccccchhHHHHHHHHHHHhhh
Q 018219 76 VLALLGATIHINVYYIGMDYVSPTVATAL-GNVVPSFTFLLAFLLGMEKVKITSGRGRAKVLGTIICVGGSLLFTLW 151 (359)
Q Consensus 76 ~~g~~~~~~~~~~~~~al~~~~~~~~~~l-~~~~pi~~~ila~l~~~e~~~~~~~~~~~~~ig~~l~~~Gv~l~~~~ 151 (359)
+.+++...+++.++..++++.|++.+..+ .++.|++++++++++++|++++.+ ++|+++.++|++++...
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~------~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPA------IIGMMLICAGVLIINLL 104 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------C------HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHhcC
Confidence 46666669999999999999999999999 899999999999999999999999 99999999999999753
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.60 E-value=6.2e-08 Score=73.50 Aligned_cols=69 Identities=20% Similarity=0.304 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHHHhccCcceeeec-hhhHHHHHHHHHHHHhcCCCcchhhHhHHHHhhhhheeeec
Q 018219 258 CGVLNSALVYYLQTWCISVKGPVFTAMF-IPVQLVIVALFSIIAFAERLHLSSLIGAFFIVAGLYCVLWG 326 (359)
Q Consensus 258 ~g~~~~~~~~~l~~~a~~~~~~~~~s~~-~~~~pv~a~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~~ 326 (359)
.++++.++++.++.+++|+.+.+.+..+ ..+.|+++.+++++++||++++.+++|+.+|++|+++....
T Consensus 35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 4556778999999999999999999888 89999999999999999999999999999999999988654
No 5
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=42.87 E-value=1.8e+02 Score=25.85 Aligned_cols=17 Identities=18% Similarity=0.247 Sum_probs=9.0
Q ss_pred HHHHHHHHHHhcccccc
Q 018219 109 PSFTFLLAFLLGMEKVK 125 (359)
Q Consensus 109 pi~~~ila~l~~~e~~~ 125 (359)
.+...++..++.+|+..
T Consensus 196 ~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 196 AILVALFAFAMMRDTPQ 212 (451)
T ss_dssp HHHHHHHHHHHCCCSST
T ss_pred HHHHHHHHHhhccCCHh
Confidence 34444555566666544
No 6
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=35.30 E-value=74 Score=28.94 Aligned_cols=45 Identities=9% Similarity=-0.083 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHHHhcCCCcchhhHhHHHHhhhhheeeeccCCCC
Q 018219 287 PVQLVIVALFSIIAFAERLHLSSLIGAFFIVAGLYCVLWGKRKDS 331 (359)
Q Consensus 287 ~~~pv~a~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~~~~~~~ 331 (359)
..-++++.++..+..-.......+.|.++++.|+.++...+++++
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~ 432 (445)
T 3l1l_A 388 LAVTTIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNRLH 432 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 344455555444333222223345688888888887766554443
No 7
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=21.99 E-value=34 Score=20.46 Aligned_cols=12 Identities=0% Similarity=-0.097 Sum_probs=4.7
Q ss_pred HHhhhhheeeec
Q 018219 315 FIVAGLYCVLWG 326 (359)
Q Consensus 315 li~~gv~l~~~~ 326 (359)
++..+.+++.++
T Consensus 25 ii~~~~~~~~RR 36 (44)
T 2l2t_A 25 IVGLTFAVYVRR 36 (44)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHhhh
Confidence 333334444333
No 8
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=20.87 E-value=3.2e+02 Score=21.77 Aligned_cols=25 Identities=12% Similarity=0.195 Sum_probs=20.1
Q ss_pred HHHHHHHhcCCCcchhhHhHHHHhh
Q 018219 294 ALFSIIAFAERLHLSSLIGAFFIVA 318 (359)
Q Consensus 294 ~l~~~~~~~e~~~~~~~~G~~li~~ 318 (359)
--+|..++++-.-+-+..+..+.++
T Consensus 127 ~~iG~~Lft~Y~lpFElaSvlLLvA 151 (184)
T 3rko_J 127 KAVGITLFGPYVLAVELASMLLLAG 151 (184)
T ss_dssp HHHHHHHTTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888999888899999888653
No 9
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=18.49 E-value=33 Score=22.84 Aligned_cols=19 Identities=32% Similarity=0.524 Sum_probs=12.2
Q ss_pred hHhHHHHhhhhheeeeccC
Q 018219 310 LIGAFFIVAGLYCVLWGKR 328 (359)
Q Consensus 310 ~~G~~li~~gv~l~~~~~~ 328 (359)
+++.++.++|++++...|-
T Consensus 25 ifA~vLfi~GI~iilS~kc 43 (74)
T 2zxe_G 25 IVAAVLCVIGIIILLAGKC 43 (74)
T ss_dssp HHHHHHHHHHHHHHTTTC-
T ss_pred hhHHHHHHHHHHHHHcCcc
Confidence 5666777777777765543
No 10
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=9.82 E-value=39 Score=22.31 Aligned_cols=36 Identities=11% Similarity=0.269 Sum_probs=0.0
Q ss_pred hHhHHHHhhhhheeeeccCCCCccCCccccCCCccc
Q 018219 310 LIGAFFIVAGLYCVLWGKRKDSLAADDEHKDGNMKT 345 (359)
Q Consensus 310 ~~G~~li~~gv~l~~~~~~~~~~~~~~~~~~~~~~~ 345 (359)
++++++.++|++++...+-+-+.+++.+..+++.+.
T Consensus 22 ifA~vLfi~GI~iilS~KckCk~~qk~r~~~p~~e~ 57 (72)
T 2jo1_A 22 VIAGILFILGILIVLSRRCRCKFNQQQRTGEPDEEE 57 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTTSSSCCCTTT
T ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCCCCCCcccc
Done!