Query 018219
Match_columns 359
No_of_seqs 188 out of 1223
Neff 9.4
Searched_HMMs 13730
Date Mon Mar 25 11:48:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018219.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018219hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 59.2 46 0.0033 27.5 21.6 27 255-281 350-376 (447)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 38.6 96 0.007 25.3 13.8 20 194-213 68-87 (447)
3 d2e74g1 f.23.26.1 (G:9-35) Pet 21.8 43 0.0031 15.8 2.6 18 186-203 3-20 (27)
4 d2r6gf1 e.70.1.1 (F:13-260) Ma 9.3 3.4E+02 0.025 20.7 6.5 64 74-148 5-68 (248)
5 d2axtl1 f.23.31.1 (L:1-37) Pho 6.7 1.9E+02 0.013 14.8 3.8 21 182-202 15-35 (37)
6 d1q90r_ f.23.12.1 (R:) ISP sub 6.5 2.1E+02 0.015 15.1 4.0 32 63-94 4-35 (39)
7 d1iwga8 f.35.1.1 (A:513-566,A: 5.9 5E+02 0.036 18.9 8.9 29 291-319 95-123 (222)
8 d1ppjd2 f.23.11.1 (D:196-241) 3.4 2.7E+02 0.019 15.2 1.7 17 7-23 9-25 (46)
9 d2nr9a1 f.51.1.1 (A:4-192) Glp 3.0 7.8E+02 0.057 17.0 10.6 15 186-200 164-178 (189)
10 d1xioa_ f.13.1.1 (A:) Sensory 2.8 9E+02 0.065 17.4 19.0 16 105-120 77-92 (226)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=59.19 E-value=46 Score=27.52 Aligned_cols=27 Identities=11% Similarity=0.097 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCcce
Q 018219 255 VMYCGVLNSALVYYLQTWCISVKGPVF 281 (359)
Q Consensus 255 l~~~g~~~~~~~~~l~~~a~~~~~~~~ 281 (359)
....|..........+....+..+...
T Consensus 350 ~~~~g~~~~~~~~~~~~~~~~~~p~~~ 376 (447)
T d1pw4a_ 350 MIVIGFLIYGPVMLIGLHALELAPKKA 376 (447)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHTSCTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 334443333333344445555555433
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=38.63 E-value=96 Score=25.26 Aligned_cols=20 Identities=15% Similarity=-0.019 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHhhhCC
Q 018219 194 SHIALSSWLILQAKVFKEYP 213 (359)
Q Consensus 194 a~~~~a~~~i~~~~~~~~~~ 213 (359)
..+.+++......++.+++.
T Consensus 68 ~~~~~~~~~~~~G~l~Dr~g 87 (447)
T d1pw4a_ 68 ISIAYGFSKFIMGSVSDRSN 87 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHcC
Confidence 34445555556666666543
No 3
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=21.80 E-value=43 Score=15.79 Aligned_cols=18 Identities=6% Similarity=0.065 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 018219 186 KGSALILTSHIALSSWLI 203 (359)
Q Consensus 186 ~G~~l~l~a~~~~a~~~i 203 (359)
+|.+..-+++++|+.|.-
T Consensus 3 lgli~~tl~glf~aayqq 20 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQQ 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHHH
Confidence 678888888888888753
No 4
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=9.27 E-value=3.4e+02 Score=20.73 Aligned_cols=64 Identities=13% Similarity=-0.019 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCchhhhhhcchhHHHHHHHHHHhcccccccccccccccchhHHHHHHHHHHH
Q 018219 74 IFVLALLGATIHINVYYIGMDYVSPTVATALGNVVPSFTFLLAFLLGMEKVKITSGRGRAKVLGTIICVGGSLLF 148 (359)
Q Consensus 74 ~~~~g~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~ila~l~~~e~~~~~~~~~~~~~ig~~l~~~Gv~l~ 148 (359)
++++|++. .+..++....+..-+-..+.++ -+.+.++.+.++.+|.-+.+ ++-=.+++..++.+
T Consensus 5 ~~ll~l~~-a~~~~~~~~~~~~~~~~~a~~~----~~~~~~~~~vy~s~r~~p~k------yi~PG~~~l~~Fvi 68 (248)
T d2r6gf1 5 WSVLGLLG-LLVGYLVVLMYAQGEYLFAITT----LILSSAGLYIFANRKAYAWR------YVYPGMAGMGLFVL 68 (248)
T ss_dssp HHHHHHHH-HHHHHTHHHHHGGGCHHHHHHH----HHHHHHHHHHHSSSCCTTHH------HHHHHHHHHHHHTH
T ss_pred HHHHHHHH-HHHHHHHHHHHHcchHHHHHHH----HHHHHheEEEEEccCcccee------hhhhHHHHHHHHHH
Confidence 44555555 4444344444444444333322 34555556666766665554 55555544444443
No 5
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.74 E-value=1.9e+02 Score=14.76 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=14.4
Q ss_pred cchhhhHHHHHHHHHHHHHHH
Q 018219 182 ENWIKGSALILTSHIALSSWL 202 (359)
Q Consensus 182 ~~~~~G~~l~l~a~~~~a~~~ 202 (359)
...-+|.++...-++.++-|.
T Consensus 15 tsLy~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 15 TSLYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHh
Confidence 344578888777777777664
No 6
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=6.51 E-value=2.1e+02 Score=15.09 Aligned_cols=32 Identities=13% Similarity=0.031 Sum_probs=20.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018219 63 RPKPSFAVMAKIFVLALLGATIHINVYYIGMD 94 (359)
Q Consensus 63 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~ 94 (359)
.+...+++..-++..|.+.......++=++.-
T Consensus 4 VpDMgrR~~MNLll~G~~~~~~~g~l~py~~f 35 (39)
T d1q90r_ 4 VPDMNKRNIMNLILAGGAGLPITTLALGYGAF 35 (39)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHhccchhhhhhccceeEE
Confidence 34566788888888887765555544444433
No 7
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=5.91 E-value=5e+02 Score=18.94 Aligned_cols=29 Identities=17% Similarity=0.048 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhcCCCcchhhHhHHHHhhh
Q 018219 291 VIVALFSIIAFAERLHLSSLIGAFFIVAG 319 (359)
Q Consensus 291 v~a~l~~~~~~~e~~~~~~~~G~~li~~g 319 (359)
+.+.+.+..+.+.+++....+|.++.++.
T Consensus 95 ~~~~~~~l~~~g~~~~~~~~~g~i~l~Gi 123 (222)
T d1iwga8 95 VIGALLAATFRGLTNDVYFQVGLLTTIGL 123 (222)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchhhhhcccccchhhh
Confidence 34455566678999999888887765543
No 8
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.44 E-value=2.7e+02 Score=15.18 Aligned_cols=17 Identities=0% Similarity=-0.015 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018219 7 IPYMAIIFNQFAFAGSN 23 (359)
Q Consensus 7 ~~~~~~l~~~~~~g~~~ 23 (359)
.|+=.+++..++.+...
T Consensus 9 mG~Kv~~~l~~l~~l~y 25 (46)
T d1ppjd2 9 MGLKMLLMMGLLLPLVY 25 (46)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34334444444444433
No 9
>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}
Probab=2.97 E-value=7.8e+02 Score=16.96 Aligned_cols=15 Identities=7% Similarity=-0.166 Sum_probs=9.4
Q ss_pred hhHHHHHHHHHHHHH
Q 018219 186 KGSALILTSHIALSS 200 (359)
Q Consensus 186 ~G~~l~l~a~~~~a~ 200 (359)
.|-+.++++++.++.
T Consensus 164 ~aHl~G~l~G~~~g~ 178 (189)
T d2nr9a1 164 AAHISGLIVGLIWGF 178 (189)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 466666666666654
No 10
>d1xioa_ f.13.1.1 (A:) Sensory rhodopsin {Anabaena sp. PCC 7120 [TaxId: 103690]}
Probab=2.85 E-value=9e+02 Score=17.41 Aligned_cols=16 Identities=13% Similarity=0.067 Sum_probs=10.4
Q ss_pred cchhHHHHHHHHHHhc
Q 018219 105 GNVVPSFTFLLAFLLG 120 (359)
Q Consensus 105 ~~~~pi~~~ila~l~~ 120 (359)
.-+.|+....+.....
T Consensus 77 ~lTtPlll~~l~l~~~ 92 (226)
T d1xioa_ 77 MVTTPLLLLSLSWTAM 92 (226)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHcccHHHHHHHHHHH
Confidence 4567877777766543
Done!