Query 018220
Match_columns 359
No_of_seqs 145 out of 201
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 11:49:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018220.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018220hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1whr_A Hypothetical KIAA1002 p 100.0 4.9E-33 1.7E-37 238.4 11.7 115 13-137 7-122 (124)
2 1msz_A DNA-binding protein smu 98.5 1.2E-07 4E-12 76.8 6.2 64 37-104 17-80 (86)
3 2cpm_A Sperm-associated antige 98.0 1.3E-05 4.4E-10 65.5 7.9 63 37-102 12-74 (94)
4 1ug8_A Poly(A)-specific ribonu 97.0 0.0023 7.9E-08 51.8 7.8 44 32-76 7-50 (87)
5 3gku_A Probable RNA-binding pr 84.5 1.7 5.7E-05 40.4 6.4 60 37-101 149-209 (225)
6 3d45_A Poly(A)-specific ribonu 63.5 1.5 5E-05 44.7 0.0 44 32-76 170-213 (507)
7 2a1r_A Poly(A)-specific ribonu 58.3 2.1 7.1E-05 42.8 0.0 43 33-76 176-218 (430)
8 3e11_A Predicted zincin-like m 20.3 35 0.0012 28.1 1.3 17 67-83 91-107 (114)
9 3f3b_A Phage-like element PBSX 19.1 4.6 0.00016 34.5 -4.4 19 65-84 2-20 (126)
10 2lw9_A Unconventionnal myosin- 17.8 45 0.0015 24.3 1.2 43 37-81 7-49 (51)
No 1
>1whr_A Hypothetical KIAA1002 protein; R3H domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.68.7.1
Probab=100.00 E-value=4.9e-33 Score=238.40 Aligned_cols=115 Identities=29% Similarity=0.498 Sum_probs=101.1
Q ss_pred hhccCCCCchHHHHHHhc-CchhHHHHHHHHHHHHHHhcCCCccceecCCCCChHHHHHHHHhhhhhccceeeecccccC
Q 018220 13 IVNERESMVDPFLVEALQ-NPRHRLTILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHYGLVTMVQENGIEG 91 (359)
Q Consensus 13 ~~~~~~~~vd~~L~eAL~-npkDRl~lLrlE~di~~FI~d~~~~~lef~pmpnSY~RLLvHRvA~yygL~h~v~d~~~dg 91 (359)
..+..+.+||+||++||+ |||||++||+||++|++||+++.++.++|+|| |||+||||||||+||||+|.+ |+
T Consensus 7 ~~d~~~~~vd~~l~eaL~~~~rdR~~il~lE~~i~~Fi~d~~~~~~ef~pm-nSy~RllvHrvAe~ygL~h~~-----d~ 80 (124)
T 1whr_A 7 GTDSTGIDLHEFLVNTLKKNPRDRMMLLKLEQEILEFINDNNNQFKKFPQM-TSYHRMLLHRVAAYFGMDHNV-----DQ 80 (124)
T ss_dssp SSCCCCSCHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHCSSCCEEECCCC-CHHHHHHHHHHHHHHTCCEEE-----CS
T ss_pred cccCCCCccCHHHHHHHHcCHHHHHHHHHHHHHHHHHHhCCCccceECCCC-CHHHHHHHHHHHHHhCcCccc-----cC
Confidence 356688999999999995 99999999999999999999999889999999 999999999999999999976 34
Q ss_pred CcceEEEEecCCCCCCccccccccccCCCccchhhhcceeeecCCC
Q 018220 92 LGNRILVRKTAESKYPAVRLSEIPAKQSEESDKLEKIKIAIRRRPN 137 (359)
Q Consensus 92 s~~~Ivv~KT~~tRiP~vrLSdl~~~~~~~s~~~~~~K~~ImkR~~ 137 (359)
.+++|+|+||++||+|+++|+|+++.... .+.++..|+||++
T Consensus 81 ~~r~VvV~Kt~~tr~P~~~lse~~~~~~~----~~~~~~~vl~r~~ 122 (124)
T 1whr_A 81 TGKAVIINKTSNTRIPEQRFSEHIKDEKN----TEFQQRFILSGPS 122 (124)
T ss_dssp SCSSEEEECCTTCCCCSCCGGGTSCSCSC----CCCCCSSCCCCCC
T ss_pred CCCEEEEEeCCCCCCChHHHHHHhccccc----ccchheeeEecCC
Confidence 56889999999999999999999964321 3345677888974
No 2
>1msz_A DNA-binding protein smubp-2; R3H fold; NMR {Homo sapiens} SCOP: d.68.7.1
Probab=98.53 E-value=1.2e-07 Score=76.77 Aligned_cols=64 Identities=27% Similarity=0.288 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHhcCCCccceecCCCCChHHHHHHHHhhhhhccceeeecccccCCcceEEEEecCCC
Q 018220 37 TILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHYGLVTMVQENGIEGLGNRILVRKTAES 104 (359)
Q Consensus 37 ~lLrlE~di~~FI~d~~~~~lef~pmpnSY~RLLvHRvA~yygL~h~v~d~~~dgs~~~Ivv~KT~~t 104 (359)
..+.++..|..|+.+ +...++||+..++++|++||.||+-|||.|.... +|....|+|.|...+
T Consensus 17 ~~~~i~~~l~~F~~~-~~~~l~FP~sLs~~eR~~IH~lA~~~GL~h~S~G---~G~~R~l~V~k~~~~ 80 (86)
T 1msz_A 17 GVDHFRAMIVEFMAS-KKMQLEFPPSLNSHDRLRVHQIAEEHGLRHDSSG---EGKRRFITVSKRAGS 80 (86)
T ss_dssp CCHHHHHHHHHHHHH-TCSEEEECTTCCSHHHHHHHHHHHHTTEEEEEEC---SSSCCEEEEEECC--
T ss_pred hHHHHHHHHHHHhcC-CCcEEEcCCCCCHHHHHHHHHHHHHcCCCcceee---CCCCeEEEEEEeCCc
Confidence 456799999999954 5578999995599999999999999999999875 356678999988654
No 3
>2cpm_A Sperm-associated antigen 7; R3H domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.04 E-value=1.3e-05 Score=65.53 Aligned_cols=63 Identities=22% Similarity=0.278 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHhcCCCccceecCCCCChHHHHHHHHhhhhhccceeeecccccCCcceEEEEecC
Q 018220 37 TILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHYGLVTMVQENGIEGLGNRILVRKTA 102 (359)
Q Consensus 37 ~lLrlE~di~~FI~d~~~~~lef~pmpnSY~RLLvHRvA~yygL~h~v~d~~~dgs~~~Ivv~KT~ 102 (359)
|-.+.|+.|.+|+++..+..++|+|| |+|.|-+||.+++.+||.+...+.++. ..+|||.+..
T Consensus 12 yR~~re~~L~~la~~~g~~~v~L~PM-~~~eRriIH~~l~~~gl~S~S~Geep~--~R~VvI~~~~ 74 (94)
T 2cpm_A 12 FRKRMEKEVSDFIQDSGQIKKKFQPM-NKIERSILHDVVEVAGLTSFSFGEDDD--CRYVMIFKKE 74 (94)
T ss_dssp HHHHHHHHHHHHHHCSSCCEEECCCC-CSSHHHHHHHHHHHHTCEEEEECSSSS--CCEEEEECST
T ss_pred HHHHHHHHHHHHHHhcCCCceEeCCC-CHHHHHHHHHHHHHCCCEEEEecCCCC--ceEEEEEeCC
Confidence 55688999999998877656999999 999999999999999999999764431 1478887654
No 4
>1ug8_A Poly(A)-specific ribonuclease; R3H domain, poly(A)-specific 3'-exoribonuclease, PARN, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.68.7.1
Probab=97.00 E-value=0.0023 Score=51.82 Aligned_cols=44 Identities=18% Similarity=0.243 Sum_probs=40.3
Q ss_pred chhHHHHHHHHHHHHHHhcCCCccceecCCCCChHHHHHHHHhhh
Q 018220 32 PRHRLTILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQ 76 (359)
Q Consensus 32 pkDRl~lLrlE~di~~FI~d~~~~~lef~pmpnSY~RLLvHRvA~ 76 (359)
|.++-+|=.+-..|.+|+++++...++++|+ |+|+|-|+++.+.
T Consensus 7 ~e~k~~id~i~~kIe~FL~s~~~~~l~l~pC-N~f~RkLIYQ~~~ 50 (87)
T 1ug8_A 7 GDQKKFIDQVIEKIEDFLQSEEKRSLELDPC-TGFQRKLIYQTLS 50 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSCCEEECCCC-CSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCCCCCceecCCc-hHHHHHHHHHHHH
Confidence 5788899999999999999999878999999 9999999999854
No 5
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=84.52 E-value=1.7 Score=40.37 Aligned_cols=60 Identities=13% Similarity=0.150 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHhcCCCccceecCCCCChHHHHHHHHhhhhh-ccceeeecccccCCcceEEEEec
Q 018220 37 TILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHY-GLVTMVQENGIEGLGNRILVRKT 101 (359)
Q Consensus 37 ~lLrlE~di~~FI~d~~~~~lef~pmpnSY~RLLvHRvA~yy-gL~h~v~d~~~dgs~~~Ivv~KT 101 (359)
.|-+|-+.+.+=+..... .+.|.|| |+|.|-+||...+-+ |+.+.....+ ...+|||...
T Consensus 149 ~L~~lA~~~A~kV~~tg~-~v~L~PM-~~~ERriIH~al~~~~~V~T~SeGee---p~R~VVI~~~ 209 (225)
T 3gku_A 149 TLETLAKNIAYKVKRTKR-SVSLEPM-NPYERRIIHAALQNDKYVVTRSDGEE---PFRHVIISLK 209 (225)
T ss_dssp HHHHHHHHHHHHHHHHCS-CEECCCC-CHHHHHHHHHHTTTCSSEEEEEESST---TSCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHhCC-EEEccCC-CHHHHHHHHHHHccCCCcEEEEeecC---CCeEEEEEEc
Confidence 444444444444544443 5789999 999999999976554 8888876543 3356776543
No 6
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=63.54 E-value=1.5 Score=44.69 Aligned_cols=44 Identities=18% Similarity=0.251 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHHhcCCCccceecCCCCChHHHHHHHHhhh
Q 018220 32 PRHRLTILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQ 76 (359)
Q Consensus 32 pkDRl~lLrlE~di~~FI~d~~~~~lef~pmpnSY~RLLvHRvA~ 76 (359)
+.|+.+|-++-+.|.+|+++.....+.++++ |+|+|.|+|++..
T Consensus 170 ~~~~~~~~~~~~~I~~wl~~~~~~~l~i~~~-n~~~r~Lv~q~l~ 213 (507)
T 3d45_A 170 EDQKKFIDQVIEKIEDFLQSEEKRSLELDPC-TGFQRKLIYQTLS 213 (507)
T ss_dssp ---------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCccccCCC-cHHHHHHHHHHHH
Confidence 5678888899999999999887767899999 9999999998753
No 7
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=58.28 E-value=2.1 Score=42.75 Aligned_cols=43 Identities=14% Similarity=0.232 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHhcCCCccceecCCCCChHHHHHHHHhhh
Q 018220 33 RHRLTILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQ 76 (359)
Q Consensus 33 kDRl~lLrlE~di~~FI~d~~~~~lef~pmpnSY~RLLvHRvA~ 76 (359)
.++.+|-++-+.|.+|+++.+...+.++++ |+|+|.|+|++-.
T Consensus 176 e~~~~~~~~~~~i~~~l~~~~~~~l~l~~~-~~~qr~Lv~q~l~ 218 (430)
T 2a1r_A 176 DQKKFIDQVVEKIEDLLQSEENKNLDLEPC-TGFQRKLIYQTLS 218 (430)
T ss_dssp --------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCccccCCC-cHHHHHHHHHHHH
Confidence 456677777788899998887677899998 9999999999754
No 8
>3e11_A Predicted zincin-like metalloprotease; DUF1025 family protein, zincin-like fold, conserved matrix metalloprotease motif; 1.80A {Acidothermus cellulolyticus 11B} SCOP: d.92.1.17
Probab=20.33 E-value=35 Score=28.14 Aligned_cols=17 Identities=18% Similarity=0.526 Sum_probs=13.9
Q ss_pred HHHHHHHhhhhhcccee
Q 018220 67 LRLAAHRVSQHYGLVTM 83 (359)
Q Consensus 67 ~RLLvHRvA~yygL~h~ 83 (359)
..-|+|.||.|||+...
T Consensus 91 ~~vvvhEiahh~G~~~e 107 (114)
T 3e11_A 91 RKTVVHEIAHHFGIDDE 107 (114)
T ss_dssp HHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHcCCCHH
Confidence 45689999999999654
No 9
>3f3b_A Phage-like element PBSX protein XKDH; NESG X-RAY SR362 P54328 structure, structural genomics, PSI- 2, protein structure initiative; 2.50A {Bacillus subtilis}
Probab=19.05 E-value=4.6 Score=34.50 Aligned_cols=19 Identities=26% Similarity=0.403 Sum_probs=13.1
Q ss_pred hHHHHHHHHhhhhhccceee
Q 018220 65 SYLRLAAHRVSQHYGLVTMV 84 (359)
Q Consensus 65 SY~RLLvHRvA~yygL~h~v 84 (359)
||++||+||| +.|+|+...
T Consensus 2 Syq~lL~~RC-DIYHl~~~e 20 (126)
T 3f3b_A 2 SYRQMLIHRC-DIYHEAAQA 20 (126)
T ss_dssp --CCCCCEEE-EEECCEEEC
T ss_pred CHHHhhhccc-ceechhhcc
Confidence 8999999996 677885543
No 10
>2lw9_A Unconventionnal myosin-X; MYO10 anti-CC, motor protein; NMR {Homo sapiens}
Probab=17.83 E-value=45 Score=24.30 Aligned_cols=43 Identities=26% Similarity=0.363 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhcCCCccceecCCCCChHHHHHHHHhhhhhccc
Q 018220 37 TILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHYGLV 81 (359)
Q Consensus 37 ~lLrlE~di~~FI~d~~~~~lef~pmpnSY~RLLvHRvA~yygL~ 81 (359)
-||+||++|+.+-+-.+.+...|.- .|-++|---|=|..+.|+
T Consensus 7 EILRLErEIE~Lqrqke~~~~~L~e--~s~~eL~~~RD~El~RLe 49 (51)
T 2lw9_A 7 EILRLEKEIEDLQRMKEQQELSLTE--ASLQKLQERRDQELRRLE 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCT--THHHHHHHHHHHHSCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH--hHHHHHHHHHHHHHHHhh
Confidence 4899999999987765554444444 677887777777777664
Done!