BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018221
(359 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 166 bits (421), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 102/326 (31%), Positives = 169/326 (51%), Gaps = 16/326 (4%)
Query: 26 LTTVPPRFVR----LE-IDHPLIRNDDTSTQQLPVIDMHRLLSGDD----SELEKLDNTC 76
+ ++P ++R LE I+ + Q+P ID+ + S D+ + +E+L
Sbjct: 15 IISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKAS 74
Query: 77 KEWGFFQLINHGVSSSLVEKVKAEIQDFFNLPIDEKKKFW--QQPGDSEGFGQHFIASEE 134
+WG LINHG+ + L+E+VK ++FF+L ++EK+K+ Q G +G+G +
Sbjct: 75 LDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNAS 134
Query: 135 QKLDWGYGFTMVTLPTXXXXXXXXXXXXXXXXDDLEVYSTEIKNLTLKILDQMAKALRMD 194
+L+W F + P + Y+ ++ L K+ ++ L ++
Sbjct: 135 GQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLE 194
Query: 195 PNDMEEL---FENGMQAFRMNYYPPCLQPEKVVGHNSHCDASALTVLLQINEMDGLQIKK 251
P+ +E+ E + ++NYYP C QPE +G +H D SALT +L N + GLQ+
Sbjct: 195 PDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILH-NMVPGLQLFY 253
Query: 252 DGKWVAVKPLPDAFVVNIGDVLEILTNGTYPSIEHRATVNSVKERLSLATFYSPKLDG-E 310
+GKWV K +PD+ V++IGD LEIL+NG Y SI HR VN K R+S A F P D
Sbjct: 254 EGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIV 313
Query: 311 LGPATSLIAPKTPALFKRISVVDHLK 336
L P +++ ++PA F + H++
Sbjct: 314 LKPLPEMVSVESPAKFPPRTFAQHIE 339
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 166 bits (421), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 102/326 (31%), Positives = 169/326 (51%), Gaps = 16/326 (4%)
Query: 26 LTTVPPRFVR----LE-IDHPLIRNDDTSTQQLPVIDMHRLLSGDD----SELEKLDNTC 76
+ ++P ++R LE I+ + Q+P ID+ + S D+ + +E+L
Sbjct: 14 IISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKAS 73
Query: 77 KEWGFFQLINHGVSSSLVEKVKAEIQDFFNLPIDEKKKFW--QQPGDSEGFGQHFIASEE 134
+WG LINHG+ + L+E+VK ++FF+L ++EK+K+ Q G +G+G +
Sbjct: 74 LDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNAS 133
Query: 135 QKLDWGYGFTMVTLPTXXXXXXXXXXXXXXXXDDLEVYSTEIKNLTLKILDQMAKALRMD 194
+L+W F + P + Y+ ++ L K+ ++ L ++
Sbjct: 134 GQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLE 193
Query: 195 PNDMEEL---FENGMQAFRMNYYPPCLQPEKVVGHNSHCDASALTVLLQINEMDGLQIKK 251
P+ +E+ E + ++NYYP C QPE +G +H D SALT +L N + GLQ+
Sbjct: 194 PDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILH-NMVPGLQLFY 252
Query: 252 DGKWVAVKPLPDAFVVNIGDVLEILTNGTYPSIEHRATVNSVKERLSLATFYSPKLDG-E 310
+GKWV K +PD+ V++IGD LEIL+NG Y SI HR VN K R+S A F P D
Sbjct: 253 EGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIV 312
Query: 311 LGPATSLIAPKTPALFKRISVVDHLK 336
L P +++ ++PA F + H++
Sbjct: 313 LKPLPEMVSVESPAKFPPRTFAQHIE 338
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 163 bits (412), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 102/326 (31%), Positives = 166/326 (50%), Gaps = 16/326 (4%)
Query: 26 LTTVPPRFVR----LE-IDHPLIRNDDTSTQQLPVIDMHRLLSGDD----SELEKLDNTC 76
+ ++P ++R LE I+ + Q+P ID+ + S D+ + +E+L
Sbjct: 15 IISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKAS 74
Query: 77 KEWGFFQLINHGVSSSLVEKVKAEIQDFFNLPIDEKKKFW--QQPGDSEGFGQHFIASEE 134
+WG LINHG+ + L E+VK ++FF+L ++EK+K+ Q G +G+G +
Sbjct: 75 LDWGVXHLINHGIPADLXERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNAS 134
Query: 135 QKLDWGYGFTMVTLPTXXXXXXXXXXXXXXXXDDLEVYSTEIKNLTLKILDQMAKALRMD 194
+L+W F + P + Y+ ++ L K+ ++ L ++
Sbjct: 135 GQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLE 194
Query: 195 PNDMEEL---FENGMQAFRMNYYPPCLQPEKVVGHNSHCDASALTVLLQINEMDGLQIKK 251
P+ +E+ E + ++NYYP C QPE +G +H D SALT +L N + GLQ+
Sbjct: 195 PDRLEKEVGGLEELLLQXKINYYPKCPQPELALGVEAHTDVSALTFILH-NXVPGLQLFY 253
Query: 252 DGKWVAVKPLPDAFVVNIGDVLEILTNGTYPSIEHRATVNSVKERLSLATFYSPKLDG-E 310
+GKWV K +PD+ V +IGD LEIL+NG Y SI HR VN K R+S A F P D
Sbjct: 254 EGKWVTAKCVPDSIVXHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIV 313
Query: 311 LGPATSLIAPKTPALFKRISVVDHLK 336
L P ++ ++PA F + H++
Sbjct: 314 LKPLPEXVSVESPAKFPPRTFAQHIE 339
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 128 bits (321), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 76/303 (25%), Positives = 146/303 (48%), Gaps = 14/303 (4%)
Query: 51 QQLPVIDMHRLLSGDDSEL-EKLDNTCKEWGFFQLINHGVSSSLVEKVKAEIQDFFNLPI 109
+ P+I + ++ + + E + + C+ WGFF+L+NHG+ + + V+ + +
Sbjct: 2 ENFPIISLDKVNGVERAATXEXIKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCX 61
Query: 110 DEKKKFWQQPGDSEGFGQHFIASEEQKLDWGYGFTMVTLPTXXXXXXXXXXXXXXXXDDL 169
+++ K EG + +E DW F + LP
Sbjct: 62 EQRFKELVASKALEG-----VQAEVTDXDWESTFFLKHLPISNISEVPDLDEEYREV--X 114
Query: 170 EVYSTEIKNLTLKILDQMAKALRMDPNDMEELFENGMQ---AFRMNYYPPCLQPEKVVGH 226
++ ++ L ++LD + + L ++ ++ F +++ YPPC +P+ + G
Sbjct: 115 RDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGL 174
Query: 227 NSHCDASALTVLLQINEMDGLQIKKDGKWVAVKPLPDAFVVNIGDVLEILTNGTYPSIEH 286
+H DA + +L Q +++ GLQ+ KDG+W+ V P + VVN+GD LE++TNG Y S+ H
Sbjct: 175 RAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXH 234
Query: 287 RATVNSVKERLSLATFYSPKLDGELGPATSLI---APKTPALFKRISVVDHLKIFFSSEL 343
R R SLA+FY+P D + PA +L+ A + ++ + D+ K++ +
Sbjct: 235 RVIAQKDGARXSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDYXKLYAGLKF 294
Query: 344 RGK 346
+ K
Sbjct: 295 QAK 297
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 111/251 (44%), Gaps = 23/251 (9%)
Query: 70 EKLDNTCKEWGFFQLINHGVSSSLVEKVKAEIQDFFNLPIDEKKKFWQQPGDSEGF---- 125
++L + + +GF L ++ + + ++ + FF LP++ KK++ G + G+
Sbjct: 24 QELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKGGARGYIPFG 83
Query: 126 ------GQHFIASE----EQKLDWGYGFTMVTLPTXXXXXXXXXXXXXXXXDDLEVYSTE 175
H+ E + L G+ F D+
Sbjct: 84 VETAKGADHYDLKEFWHXGRDLPPGHRFRA------HXADNVWPAEIPAFKHDVSWLYNS 137
Query: 176 IKNLTLKILDQMAKALRMDPNDMEELFENGMQAFRMNYYPPCLQPEKVVGHNSHCDASAL 235
+ K+L+ +A L+++ + + ++G R+ +YPP + V +H D + +
Sbjct: 138 LDGXGGKVLEAIATYLKLERDFFKPTVQDGNSVLRLLHYPPIPKDATGVRAGAHGDINTI 197
Query: 236 TVLLQINEMDGLQI-KKDGKWVAVKPLPDAFVVNIGDVLEILTNGTYPSIEHRATVNSVK 294
T+LL E GL++ +DG+W+ + P P V+NIGD LE LTN PS HR VN
Sbjct: 198 TLLLGAEE-GGLEVLDRDGQWLPINPPPGCLVINIGDXLERLTNNVLPSTVHR-VVNPPP 255
Query: 295 ERLSLATFYSP 305
ER + + +P
Sbjct: 256 ERRGVPRYSTP 266
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 105/247 (42%), Gaps = 29/247 (11%)
Query: 75 TCKEWGFFQLINHGVSSSLVEKVKAEIQDFFNLPIDEKKKFWQQPGDSEGFGQHFIASEE 134
+ +E GF L NH + LVE++ E Q FFN + K +F +GF I SE
Sbjct: 21 SLRETGFGVLSNHPIDKELVERIYTEWQAFFN--SEAKNEFXFNRETHDGFFPASI-SET 77
Query: 135 QKLDWGYGFTMVTLPTXXXXXXXXXXXXXXXXDDLEVYSTEIKNLTLKILDQMAKALRMD 194
K G T+ + + L Y + L ++L+ +
Sbjct: 78 AK-----GHTVKDIKEYYHVYPWGRIPDSLRANILAYYE-KANTLASELLEWIET---YS 128
Query: 195 PNDMEELFE---------NGMQAFRMNYYPPCLQPEK--VVGHNSHCDASALTVLLQINE 243
P++++ F + R+ +YPP E+ + +H D + +TVL NE
Sbjct: 129 PDEIKAKFSIPLPEXIANSHKTLLRILHYPPXTGDEEXGAIRAAAHEDINLITVLPTANE 188
Query: 244 MDGLQIK-KDGKWVAVKPLPDAFVVNIGDVLEILTNGTYPSIEHRAT----VNSVKERLS 298
GLQ+K KDG W+ V ++NIGD L+ ++G +PS HR + K R+S
Sbjct: 189 -PGLQVKAKDGSWLDVPSDFGNIIINIGDXLQEASDGYFPSTSHRVINPEGTDKTKSRIS 247
Query: 299 LATFYSP 305
L F P
Sbjct: 248 LPLFLHP 254
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 67/300 (22%), Positives = 119/300 (39%), Gaps = 43/300 (14%)
Query: 49 STQQLPVIDMHRLLSGDDSE----LEKLDNTCKEWGFFQLINHGVSSSLVEKVKAEIQDF 104
S +P ID+ L D + +++D ++ GFF +NHG++ V+++ + ++F
Sbjct: 5 SKANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGIN---VQRLSQKTKEF 61
Query: 105 -FNLPIDEK-----KKFWQQPGDSEGFGQHF-IASEEQKLDWGY---GFT------MVTL 148
++ +EK + + ++ D G + I ++ + Y FT
Sbjct: 62 HMSITPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKT 121
Query: 149 PTXXXXXXXXXXXXXXXXDDLEVYSTEIKNLTLKILDQMAKALRMDPNDMEELFE----- 203
PT D E Y ++ L+ +L A AL + N F+
Sbjct: 122 PTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTL 181
Query: 204 NGMQAFRMNYYPPCLQPEKVVGHNS---------HCDASALTVLLQINEMDGLQIKKDGK 254
+ R Y P PE + + H D S +TVL Q N + LQ++
Sbjct: 182 ASVVLIRYPYLDPY--PEAAIKTAADGTKLSFEWHEDVSLITVLYQSN-VQNLQVETAAG 238
Query: 255 WVAVKPLPDAFVVNIGDVLEILTNGTYPSIEHRAT-VNSVKERLSLATFYSPKLDGELGP 313
+ ++ +++N G + LTN Y + HR VN+ ER SL F + D + P
Sbjct: 239 YQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNA--ERQSLPFFVNLGYDSVIDP 296
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 67/300 (22%), Positives = 119/300 (39%), Gaps = 43/300 (14%)
Query: 49 STQQLPVIDMHRLLSGDDSE----LEKLDNTCKEWGFFQLINHGVSSSLVEKVKAEIQDF 104
S +P ID+ L D + +++D ++ GFF +NHG++ V+++ + ++F
Sbjct: 5 SKANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGIN---VQRLSQKTKEF 61
Query: 105 -FNLPIDEK-----KKFWQQPGDSEGFGQHF-IASEEQKLDWGY---GFT------MVTL 148
++ +EK + + ++ D G + I ++ + Y FT
Sbjct: 62 HMSITPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKT 121
Query: 149 PTXXXXXXXXXXXXXXXXDDLEVYSTEIKNLTLKILDQMAKALRMDPNDMEELFE----- 203
PT D E Y ++ L+ +L A AL + N F+
Sbjct: 122 PTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTL 181
Query: 204 NGMQAFRMNYYPPCLQPEKVVGHNS---------HCDASALTVLLQINEMDGLQIKKDGK 254
+ R Y P PE + + H D S +TVL Q N + LQ++
Sbjct: 182 ASVVLIRYPYLDPY--PEAAIKTAADGTKLSFEWHEDVSLITVLYQSN-VQNLQVETAAG 238
Query: 255 WVAVKPLPDAFVVNIGDVLEILTNGTYPSIEHRAT-VNSVKERLSLATFYSPKLDGELGP 313
+ ++ +++N G + LTN Y + HR VN+ ER SL F + D + P
Sbjct: 239 YQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNA--ERQSLPFFVNLGYDSVIDP 296
>pdb|3A5Z|B Chain B, Crystal Structure Of Escherichia Coli Genx In Complex With
Elongation Factor P
pdb|3A5Z|D Chain D, Crystal Structure Of Escherichia Coli Genx In Complex With
Elongation Factor P
pdb|3A5Z|F Chain F, Crystal Structure Of Escherichia Coli Genx In Complex With
Elongation Factor P
pdb|3A5Z|H Chain H, Crystal Structure Of Escherichia Coli Genx In Complex With
Elongation Factor P
Length = 191
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 17 ILDLANNQPLTTVPPRFVRLEI--DHPLIRNDDTSTQQLPV 55
I+ L N QP++ PP FV LEI P ++ D T P
Sbjct: 117 IVTLWNGQPISVTPPNFVELEIVDTDPGLKGDTAGTGGKPA 157
>pdb|1W28|A Chain A, Conformational Flexibility Of The C-Terminus With
Implications For Substrate Binding And Catalysis In A
New Crystal Form Of Deacetoxycephalosporin C Synthase
pdb|1W2A|X Chain X, Deacetoxycephalosporin C Synthase (With His-Tag) Complexed
With Fe(Ii) And Ethylene Glycol
pdb|1W2N|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Ampicillin
pdb|1W2O|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Deacetoxycephalosporin C
Length = 331
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 48/111 (43%), Gaps = 7/111 (6%)
Query: 183 ILDQMAKALRMDPNDMEELFENGMQAFRMNYYPPCLQ----PEKVVGHNSHCDASALTVL 238
+ ++ +A +P+ E F + R Y+P + E+ + H D S +T++
Sbjct: 153 VAREVLRATGTEPDGGVEAFLDCEPLLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLI 212
Query: 239 LQINEMDG---LQIKKDGKWVAVKPLPDAFVVNIGDVLEILTNGTYPSIEH 286
Q +G LQ + G + + PDA +V G + ++T G + H
Sbjct: 213 QQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIATLVTGGQVKAPRH 263
>pdb|1E5H|A Chain A, Delta-R307a Deacetoxycephalosporin C Synthase Complexed
With Succinate And Carbon Dioxide
Length = 308
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 48/111 (43%), Gaps = 7/111 (6%)
Query: 183 ILDQMAKALRMDPNDMEELFENGMQAFRMNYYPPCLQ----PEKVVGHNSHCDASALTVL 238
+ ++ +A +P+ E F + R Y+P + E+ + H D S +T++
Sbjct: 133 VAREVLRATGTEPDGGVEAFLDCEPLLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLI 192
Query: 239 LQINEMDG---LQIKKDGKWVAVKPLPDAFVVNIGDVLEILTNGTYPSIEH 286
Q +G LQ + G + + PDA +V G + ++T G + H
Sbjct: 193 QQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIATLVTGGQVKAPRH 243
>pdb|1HJF|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
pdb|1HJG|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
Length = 311
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 48/111 (43%), Gaps = 7/111 (6%)
Query: 183 ILDQMAKALRMDPNDMEELFENGMQAFRMNYYPPCLQ----PEKVVGHNSHCDASALTVL 238
+ ++ +A +P+ E F + R Y+P + E+ + H D S +T++
Sbjct: 133 VAREVLRATGTEPDGGVEAFLDCEPLLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLI 192
Query: 239 LQINEMDG---LQIKKDGKWVAVKPLPDAFVVNIGDVLEILTNGTYPSIEH 286
Q +G LQ + G + + PDA +V G + ++T G + H
Sbjct: 193 QQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIATLVTGGQVKAPRH 243
>pdb|1UNB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Ampicillin
pdb|1UO9|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Succinate
pdb|1UOB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Penicillin G
pdb|1UOF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Penicillin G
pdb|1UOG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Deacetoxycephalosporin C
pdb|1DCS|A Chain A, Deacetoxycephalosporin C Synthase From S. Clavuligerus
pdb|1RXF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
pdb|1RXG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
And 2- Oxoglutarate
pdb|2JB8|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
5-hydroxy- 4-keto Valeric Acid
Length = 311
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 48/111 (43%), Gaps = 7/111 (6%)
Query: 183 ILDQMAKALRMDPNDMEELFENGMQAFRMNYYPPCLQ----PEKVVGHNSHCDASALTVL 238
+ ++ +A +P+ E F + R Y+P + E+ + H D S +T++
Sbjct: 133 VAREVLRATGTEPDGGVEAFLDCEPLLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLI 192
Query: 239 LQINEMDG---LQIKKDGKWVAVKPLPDAFVVNIGDVLEILTNGTYPSIEH 286
Q +G LQ + G + + PDA +V G + ++T G + H
Sbjct: 193 QQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIATLVTGGQVKAPRH 243
>pdb|1E5I|A Chain A, Delta-R306 Deacetoxycephalosporin C Synthase Complexed
With Iron And 2-Oxoglutarate
Length = 306
Score = 31.2 bits (69), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 48/111 (43%), Gaps = 7/111 (6%)
Query: 183 ILDQMAKALRMDPNDMEELFENGMQAFRMNYYPPCLQ----PEKVVGHNSHCDASALTVL 238
+ ++ +A +P+ E F + R Y+P + E+ + H D S +T++
Sbjct: 133 VAREVLRATGTEPDGGVEAFLDCEPLLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLI 192
Query: 239 LQINEMDG---LQIKKDGKWVAVKPLPDAFVVNIGDVLEILTNGTYPSIEH 286
Q +G LQ + G + + PDA +V G + ++T G + H
Sbjct: 193 QQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIATLVTGGQVKAPRH 243
>pdb|4G8B|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant Complexed With N-hexanoyl Homoserine
Lactone
pdb|4G8B|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant Complexed With N-hexanoyl Homoserine
Lactone
pdb|4G8D|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant
pdb|4G8D|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant
Length = 279
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 298 SLATFYSPKLDGELGPATSLIAPKTPALFKRISVVD 333
S ++P+L+GE+G +IAP P K +D
Sbjct: 35 SSGAIFAPQLEGEIGKKWRVIAPDLPGHGKSTDAID 70
>pdb|4G5X|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G5X|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G9E|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
pdb|4G9E|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
Length = 279
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 298 SLATFYSPKLDGELGPATSLIAPKTPALFKRISVVD 333
S ++P+L+GE+G +IAP P K +D
Sbjct: 35 SSGAIFAPQLEGEIGKKWRVIAPDLPGHGKSTDAID 70
>pdb|4G8C|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G8C|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G9G|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
pdb|4G9G|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
Length = 279
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 298 SLATFYSPKLDGELGPATSLIAPKTPALFKRISVVD 333
S ++P+L+GE+G +IAP P K +D
Sbjct: 35 SSGAIFAPQLEGEIGKKWRVIAPDLPGHGKSTDAID 70
>pdb|2V42|A Chain A, Crystal Structure Of Rseb: A Sensor For Periplasmic Stress
Response In E. Coli
pdb|2V42|B Chain B, Crystal Structure Of Rseb: A Sensor For Periplasmic Stress
Response In E. Coli
pdb|2V43|C Chain C, Crystal Structure Of Rseb: A Sensor For Periplasmic Stress
Response In E. Coli
pdb|2V43|A Chain A, Crystal Structure Of Rseb: A Sensor For Periplasmic Stress
Response In E. Coli
pdb|2V43|B Chain B, Crystal Structure Of Rseb: A Sensor For Periplasmic Stress
Response In E. Coli
Length = 303
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 85 INHGVSSSLVEKVKAEIQDFFNLPIDEKKKF-WQQPGDSEGFGQ 127
+N +SSS+ KA + ++P+ EK KF W +GF +
Sbjct: 169 VNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSE 212
>pdb|2P4B|A Chain A, Crystal Structure Of E.Coli Rseb
pdb|2P4B|B Chain B, Crystal Structure Of E.Coli Rseb
pdb|2P4B|C Chain C, Crystal Structure Of E.Coli Rseb
pdb|3M4W|A Chain A, Structural Basis For The Negative Regulation Of Bacterial
Stress Response By Rseb
pdb|3M4W|B Chain B, Structural Basis For The Negative Regulation Of Bacterial
Stress Response By Rseb
pdb|3M4W|C Chain C, Structural Basis For The Negative Regulation Of Bacterial
Stress Response By Rseb
pdb|3M4W|D Chain D, Structural Basis For The Negative Regulation Of Bacterial
Stress Response By Rseb
Length = 295
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 85 INHGVSSSLVEKVKAEIQDFFNLPIDEKKKF-WQQPGDSEGFGQ 127
+N +SSS+ KA + ++P+ EK KF W +GF +
Sbjct: 167 VNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSE 210
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,388,155
Number of Sequences: 62578
Number of extensions: 412453
Number of successful extensions: 1193
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1164
Number of HSP's gapped (non-prelim): 29
length of query: 359
length of database: 14,973,337
effective HSP length: 100
effective length of query: 259
effective length of database: 8,715,537
effective search space: 2257324083
effective search space used: 2257324083
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)