BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018223
(359 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0JHZ2|C3H11_ORYSJ Zinc finger CCCH domain-containing protein 11 OS=Oryza sativa
subsp. japonica GN=Os01g0834700 PE=2 SV=2
Length = 366
Score = 530 bits (1365), Expect = e-150, Method: Compositional matrix adjust.
Identities = 286/365 (78%), Positives = 321/365 (87%), Gaps = 7/365 (1%)
Query: 1 MPPKQQ--SKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNVQPKPDQSKVAAKK 58
MPPK+ SKA+LAKKQK+VEDKTFGLKNKNKSKNVQKYVQ+L Q VQPKPD +K AAKK
Sbjct: 1 MPPKKAAPSKADLAKKQKVVEDKTFGLKNKNKSKNVQKYVQSLHQAVQPKPDPTKTAAKK 60
Query: 59 KKEEEKAKEKELNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQR 118
KKEEEKA+EKELNDLFK+AVSQPKVPVGVDPKSI+CEF+K GQCQKGFKCKFSHDLNVQR
Sbjct: 61 KKEEEKAREKELNDLFKVAVSQPKVPVGVDPKSIVCEFFKVGQCQKGFKCKFSHDLNVQR 120
Query: 119 KGEKIDIYSDKRDKETMEDWDQETLEKVVESKNKEYQQNKPTDIVCKYFLEAVEKKQYGW 178
KGEKIDIY+DKRD ETMEDWDQETLEKVV SK EYQQNKPTDIVCKYFL+AVEKKQYGW
Sbjct: 121 KGEKIDIYTDKRDAETMEDWDQETLEKVVASKGAEYQQNKPTDIVCKYFLDAVEKKQYGW 180
Query: 179 FWVCPNGGKDCHYRHALPPGYVLKSQMKALLEEEAEKITIEEEIENQRAKITTTTPMTPE 238
FWVCPNGGKDCHYRHALPPGYVLKSQMKALLEEE+EKI IE+EIE+QR K+ TTTPMT +
Sbjct: 181 FWVCPNGGKDCHYRHALPPGYVLKSQMKALLEEESEKIAIEDEIEDQRKKVKTTTPMTTD 240
Query: 239 LFTEWKKKKIAERDAGLAAERAERAKNDRMSGRELFLSDSSWFVDDAEAYDKYQREEESH 298
LF EWK+KK ER+AGLAA RAERAKNDRMSGRELF++DSS FVDDAEAYD Y+R+EES
Sbjct: 241 LFMEWKRKKAEEREAGLAALRAERAKNDRMSGRELFMADSSVFVDDAEAYDVYERQEESE 300
Query: 299 VTEQKANGNSARDGPSNSAKAGQEDE----VVPDDDDELDMDELNELEASLAKTSIQIQD 354
E+ +N N +GPS+S G+E E + DD+LD+DELNELEASL++TSIQI++
Sbjct: 301 ANEEPSNKNQ-DEGPSSSTSNGKEVEESDDEDINIDDDLDIDELNELEASLSRTSIQIRE 359
Query: 355 PSNGS 359
P G+
Sbjct: 360 PGEGT 364
>sp|Q9SK74|C3H21_ARATH Zinc finger CCCH domain-containing protein 21 OS=Arabidopsis
thaliana GN=At2g20280 PE=4 SV=1
Length = 371
Score = 483 bits (1243), Expect = e-135, Method: Compositional matrix adjust.
Identities = 280/367 (76%), Positives = 320/367 (87%), Gaps = 10/367 (2%)
Query: 1 MPPKQQSKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNVQPKPDQSKVAAKKKK 60
MPPKQQ KA+LAKKQK VEDKTFGLKNKNKSKNVQKYVQ+LKQ+VQPKPD +K AAKKKK
Sbjct: 1 MPPKQQPKADLAKKQKQVEDKTFGLKNKNKSKNVQKYVQSLKQSVQPKPDATKAAAKKKK 60
Query: 61 EEEKAKEKELNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKG 120
EEEKA+E+ELN+LFK+A+SQPKVPVGVDPKSILCEF+KAGQCQKGFKCKFSHDLN+QRKG
Sbjct: 61 EEEKAREQELNELFKVAISQPKVPVGVDPKSILCEFFKAGQCQKGFKCKFSHDLNIQRKG 120
Query: 121 EKIDIYSDKRDKET-MEDWDQETLEKVVESKNKEYQQNKPTDIVCKYFLEAVEKKQYGWF 179
EKIDIYSD RD++ M++WDQETLEKVVESK EY QNKPTDIVCKYFL+AVEKKQYGWF
Sbjct: 121 EKIDIYSDTRDEDGDMDEWDQETLEKVVESKKNEYNQNKPTDIVCKYFLDAVEKKQYGWF 180
Query: 180 WVCPNGGKDCHYRHALPPGYVLKSQMKALLEEE-AEKITIEEEIENQRAKITTTTPMTPE 238
W CPNGGK+CHYRHALPPGYVLKSQMKALLEEE ++K+ +E+EIEN+RAK+ T T MTP
Sbjct: 181 WSCPNGGKECHYRHALPPGYVLKSQMKALLEEESSKKLAVEDEIENERAKLQTATQMTPA 240
Query: 239 LFTEWKKKKIAERDAGLAAERAERAKNDRMSGRELFLSDSSWFVDDAEAYDKYQREEESH 298
LF EWK+KKIAERDAGLAA +AERAKNDRMSGRELFLS++S FVDDAEA ++Y+RE E
Sbjct: 241 LFMEWKRKKIAERDAGLAASQAERAKNDRMSGRELFLSNASLFVDDAEACEEYEREREQE 300
Query: 299 VTEQKANGNSARDGPS-NSAKAGQEDEVV-------PDDDDELDMDELNELEASLAKTSI 350
TEQKA A G S +S A Q + V DDDD+LDMDEL+ELEASL+KTSI
Sbjct: 301 ETEQKAKNKEAEAGTSKSSGDAEQSSKEVNEEEEDDDDDDDDLDMDELDELEASLSKTSI 360
Query: 351 QIQDPSN 357
QI++P++
Sbjct: 361 QIREPND 367
>sp|Q54DA5|ZC3HF_DICDI Zinc finger CCCH domain-containing protein 15 homolog
OS=Dictyostelium discoideum GN=DDB_G0292410 PE=3 SV=1
Length = 373
Score = 231 bits (589), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 152/306 (49%), Positives = 202/306 (66%), Gaps = 21/306 (6%)
Query: 1 MPPKQ--QSKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNVQPKPDQSKVAAKK 58
MPPKQ K +K+K VEDKTFGLKNKNKSK V YV ++ V+ Q+K AA K
Sbjct: 1 MPPKQAQSKKTVEKEKKKKVEDKTFGLKNKNKSKKVAAYVSQVEAQVKHSGLQNKEAALK 60
Query: 59 KKEE------EKAKEKELNDLFKIAVSQPKVPVGVDPKSILCEFYKAG-QCQKGFKCKFS 111
+K + EKAK KE + + Q KVP+GVDPKSI+CE++K G C KG +CKF+
Sbjct: 61 EKAKRDKELAEKAK-KEAESILVNTIVQSKVPLGVDPKSIVCEYFKQGVTCPKGNRCKFA 119
Query: 112 HDLNVQRKGEKIDIYSDKR-DKETMEDWDQETLEKVVESKNKEYQQNKPTDIVCKYFLEA 170
HDL RK EKIDIY+D+R D++TME+WD+ L+ VVE K + KPT I+CK+FL+A
Sbjct: 120 HDLAAGRKSEKIDIYTDRRKDEDTMENWDEAKLKSVVEKKRTTENKAKPTAIICKFFLDA 179
Query: 171 VEKKQYGWFWVCPNGGKDCHYRHALPPGYVLKSQMKALLEEEAEKITIEEEIENQRAKIT 230
+E K+YGWFW CPNGG+ C Y+H LP GY LK + K+ E+E E+I IEE IE +RAK+T
Sbjct: 180 IESKKYGWFWECPNGGEKCAYQHCLPEGYQLKKK-KSREEDEVEEIPIEELIEEERAKLT 238
Query: 231 TTTPMTPELFTEWKKKKIAERDAGLAAERAE-------RAKNDRMSGRELFLSDSSWFVD 283
+TP+T E F WK++K +++ AA+ A+ +A MSGRE+F+ + FVD
Sbjct: 239 KSTPVTLETFLRWKEEKRLQKEK--AAKDAQDKRLADIKAGKTSMSGREMFVFNPDLFVD 296
Query: 284 DAEAYD 289
D A D
Sbjct: 297 DESAID 302
>sp|Q12000|TMA46_YEAST Translation machinery-associated protein 46 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TMA46 PE=1
SV=2
Length = 345
Score = 229 bits (585), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 136/314 (43%), Positives = 196/314 (62%), Gaps = 20/314 (6%)
Query: 1 MPPKQQSKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNVQPKPDQSKVAAKKKK 60
MPPK+ +A+ A K+K DKTFG+KNKN+S VQKY++ ++ PK ++ ++ ++K
Sbjct: 1 MPPKKGKQAQAAGKKKDNVDKTFGMKNKNRSTKVQKYIKQVQSQSDPKKEEMRLKKLEEK 60
Query: 61 EEEKAKEKELNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKG 120
+ +A+E E LF V+ +V GVDPKS++C +K G C KG KCKFSHDLNV R+
Sbjct: 61 KRREAEEAERRALFN-PVADQRVRAGVDPKSMVCALFKLGNCNKGAKCKFSHDLNVGRRM 119
Query: 121 EKIDIYSDKR---DKETMEDWDQETLEKVVESKNKEYQQNKPTDIVCKYFLEAVEKKQYG 177
EK D+Y D R + +TM++WD+E L KV+ SK+ + TD VCKYF+EAVE +YG
Sbjct: 120 EKKDLYQDTRSEKENDTMDNWDEEKLRKVILSKHGNPKTT--TDKVCKYFIEAVENGKYG 177
Query: 178 WFWVCPNGGKDCHYRHALPPGYVLKSQMKALLEEEA----EKITIEEEIENQRAKI--TT 231
WFW+CPNGG C YRH+LP G+VLK+ + LE E+ KIT+EE IE +R K+ +
Sbjct: 178 WFWICPNGGDKCMYRHSLPEGFVLKTNEQKRLERESLEKQPKITLEEFIETERGKLDKSK 237
Query: 232 TTPMTPELFTEWKKKKIAERDAGLAAERAERAKNDRMSGRELFLSDS----SWFVDDAEA 287
TP+T F +WKK + A + AE+ +K + +GRE+ L S S+ D+A+
Sbjct: 238 LTPITIANFAQWKKDHVI---AKINAEKKLSSKR-KPTGREIILKMSAENKSFETDNADM 293
Query: 288 YDKYQREEESHVTE 301
D + +TE
Sbjct: 294 PDDVTQGSAWDLTE 307
>sp|Q93618|ZC3HF_CAEEL Zinc finger CCCH domain-containing protein 15 homolog
OS=Caenorhabditis elegans GN=F27D4.4 PE=2 SV=3
Length = 374
Score = 220 bits (561), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 146/316 (46%), Positives = 202/316 (63%), Gaps = 28/316 (8%)
Query: 1 MPPKQQS---KAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNVQPKPDQSKVAAK 57
MPPKQQ K+E +K+K++EDKTFGLKNK +KN QK+V ++ V+ + +
Sbjct: 1 MPPKQQGPSKKSEQKRKEKVIEDKTFGLKNKKGNKN-QKFVAQVENQVRNNNTRMDLV-- 57
Query: 58 KKKEEEKAKEKELNDLFKIA-VSQP---KVPVGVDPKSILCEFYKAGQCQKGFKCKFSHD 113
+++E AK+KE ++L IA + +P KV VDPKS+LC F+K G C KG KCKFSHD
Sbjct: 58 --RQQEAAKKKEKDELLDIANLLKPVEQKVAKDVDPKSLLCVFFKQGLCGKGAKCKFSHD 115
Query: 114 LNVQRKGEKIDIYSDKR----DKETMEDWDQETLEKVVESKNKEYQQNKPTDIVCKYFLE 169
L V +K K ++Y+D R D+ET E+WD + L +VV KNK DIVCKYFLE
Sbjct: 116 LAVAQKTAKKNLYADSREVEKDEETNENWDSDKLNEVVNKKNKNKHM---IDIVCKYFLE 172
Query: 170 AVEKKQYGWFWVCPNGGKDCHYRHALPPGYVLKSQMKALLEEEAEKITIEEEIENQRAKI 229
AVE +YGWFW CPNGG+ C YRH LP GYVLK + KA+ +++ ++I+IEE +E +RA +
Sbjct: 173 AVENNKYGWFWECPNGGEKCQYRHCLPEGYVLKKERKAMEQQKEDEISIEELVEKERAAL 232
Query: 230 TT--TTPMTPELFTEWKKKKIAERDAGLAA------ERAERAKNDRMSGRELFLSDSSWF 281
++ T +T + F WKKKK+ ER A E+ + K++ MSGR+LFL D++
Sbjct: 233 SSKNLTKLTLQTFIAWKKKKLRERKEKEEADLKEKKEKIKSGKHNGMSGRDLFLYDANLV 292
Query: 282 -VDDAEAYDKYQREEE 296
DD EA D +EE
Sbjct: 293 NNDDDEAGDIEMEKEE 308
>sp|Q6DD06|ZC3HF_XENLA Zinc finger CCCH domain-containing protein 15 OS=Xenopus laevis
GN=zc3h15 PE=2 SV=1
Length = 426
Score = 217 bits (553), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 134/300 (44%), Positives = 186/300 (62%), Gaps = 23/300 (7%)
Query: 1 MPPKQQSKAELAKKQKIVEDK-------TFGLKNKNKSKNVQKYVQNLKQNVQPKPDQSK 53
MPPK+ A A K+ + K TFGLKNK +K QK+++N+ V+ +
Sbjct: 1 MPPKKAPAAPQASKKTEQKKKEKIIEDKTFGLKNKKGAKQ-QKFIKNVTHQVKSGQQNPR 59
Query: 54 VAAKKKKEEEKAKE------KELNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFK 107
+ A+ + +++ K+ +ELNDLFK V KV G DPKS++C F+K GQC KG K
Sbjct: 60 LVAQAEGDKKNKKDDKMKELQELNDLFKPVVVAQKVSKGADPKSVVCAFFKQGQCTKGDK 119
Query: 108 CKFSHDLNVQRKGEKIDIYSDKRD----KETMEDWDQETLEKVVESKNKEYQQNKP-TDI 162
CKFSHDL+++RK EK +Y D RD K+TME+WD++ LE+VV K+ E ++ K T I
Sbjct: 120 CKFSHDLSLERKCEKRSVYVDGRDDELEKDTMENWDEKKLEEVVNKKHGEAEKIKAKTQI 179
Query: 163 VCKYFLEAVEKKQYGWFWVCPNGGKDCHYRHALPPGYVLKSQMKALLEEEAEKITIEEEI 222
VCK+FLEA+E +YGWFWVCP GG C YRHALPPG+VLK + E++ E I++E+ I
Sbjct: 180 VCKFFLEAIENNKYGWFWVCPGGGDTCMYRHALPPGFVLKKEKVK--EDKDEDISLEDLI 237
Query: 223 ENQRAKIT-TTTPMTPELFTEWKKKKIAERDAGLAAERAERAKNDRMSGRELFLSDSSWF 281
E +RA + T +T E F +WKK+K A+R L E E+ K D SG+ L +S F
Sbjct: 238 EKERAALGPNVTRITLESFLQWKKRKRADRILKL-EEEMEKRKEDFKSGKSLGVSGREVF 296
>sp|A4IGY3|ZC3HF_XENTR Zinc finger CCCH domain-containing protein 15 OS=Xenopus tropicalis
GN=zc3h15 PE=2 SV=1
Length = 426
Score = 215 bits (548), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 131/271 (48%), Positives = 177/271 (65%), Gaps = 21/271 (7%)
Query: 22 TFGLKNKNKSKNVQKYVQNLKQNVQPKPDQSKVAAK------KKKEEEKAKEKELNDLFK 75
TFGLKNK +K QK+++N+ V+ ++ A+ KK+++K + ELNDLFK
Sbjct: 29 TFGLKNKKGAKQ-QKFIKNVIHQVKFGQQNPRLVAQAEGEKKTKKDDKKKELLELNDLFK 87
Query: 76 IAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRD---- 131
V+ KV G DPKS++C FYK GQC KG KCKFSHDL+++RK EK +Y D RD
Sbjct: 88 PVVAAQKVSKGADPKSVVCAFYKQGQCTKGDKCKFSHDLSLERKCEKRSVYVDGRDEELE 147
Query: 132 KETMEDWDQETLEKVVESKNKEYQQNKP-TDIVCKYFLEAVEKKQYGWFWVCPNGGKDCH 190
K+TME+WD++ LE+VV K+ E ++ KP T IVCK+FLEA+E +YGWFWVCP GG C
Sbjct: 148 KDTMENWDEKKLEEVVNKKHGEAEKIKPKTQIVCKFFLEAIENNKYGWFWVCPGGGDMCM 207
Query: 191 YRHALPPGYVLKSQMKALLEEEAEKITIEEEIENQRAKI-TTTTPMTPELFTEWKKKKIA 249
YRHALPPG+VLK K EE+ E+I++E+ IE +RA + T +T E F EWKK+K
Sbjct: 208 YRHALPPGFVLKKDKKK--EEKDEEISLEDLIERERAGLGLNVTRITLESFLEWKKRKRQ 265
Query: 250 ERDAGLAAERAER------AKNDRMSGRELF 274
+R L E +R K+ +SGRE+F
Sbjct: 266 DRIVKLEEEMEKRKADFKAGKSLGISGREVF 296
>sp|A8WMM4|ZC3HF_CAEBR Zinc finger CCCH domain-containing protein 15 homolog
OS=Caenorhabditis briggsae GN=CBG00292 PE=3 SV=2
Length = 374
Score = 215 bits (547), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 145/314 (46%), Positives = 197/314 (62%), Gaps = 26/314 (8%)
Query: 1 MPPKQ--QSKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNVQPKPDQSKVAAKK 58
MPPKQ KAE +K+K++EDKTFGLKNK +KN QK+V ++ V+ + +
Sbjct: 1 MPPKQAPSKKAENKRKEKVIEDKTFGLKNKKGNKN-QKFVAQIENQVRNNNTRMDLV--- 56
Query: 59 KKEEEKAKEKELNDLFKIA-VSQP---KVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDL 114
+++E AK+KE ++L I + +P KV VDPKS+LC F+K G C KG KCKFSHDL
Sbjct: 57 -RQQEAAKKKEKDELLDIQNLLKPVEQKVAKDVDPKSLLCVFFKQGLCGKGAKCKFSHDL 115
Query: 115 NVQRKGEKIDIYSDKRD---KETMEDWDQETLEKVVESKNKEYQQNKPTDIVCKYFLEAV 171
V +K K ++Y+D R+ ET E+WD+E L++VV KNK DIVCKYFLEAV
Sbjct: 116 AVAQKTAKKNLYADSREVEKDETNENWDKEKLDEVVNKKNK---GGHVIDIVCKYFLEAV 172
Query: 172 EKKQYGWFWVCPNGGKDCHYRHALPPGYVLKSQMKALLEEEAEKITIEEEIENQRAKITT 231
E +YGWFW CPNGG C YRH LP GYVLK KA+ ++ ++I+IEE +E +RA + +
Sbjct: 173 ENNKYGWFWECPNGGDKCQYRHCLPEGYVLKKDRKAMEAQKEDEISIEELVEKERAALNS 232
Query: 232 --TTPMTPELFTEWKKKKIAERDAGLAA------ERAERAKNDRMSGRELFLSDSSWF-V 282
T +T + F WKKKK+ ER A E+ + K++ MSGR+LFL D++
Sbjct: 233 KDLTKLTLQTFVAWKKKKLKERKEKEEADLKAKKEKIKSGKHNGMSGRDLFLFDANLINN 292
Query: 283 DDAEAYDKYQREEE 296
DD EA D +EE
Sbjct: 293 DDDEAGDIEMEKEE 306
>sp|Q6U6G5|ZC3HF_RAT Zinc finger CCCH domain-containing protein 15 OS=Rattus norvegicus
GN=Zc3h15 PE=2 SV=1
Length = 426
Score = 215 bits (547), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 140/299 (46%), Positives = 196/299 (65%), Gaps = 22/299 (7%)
Query: 1 MPPKQQSKA------ELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNV---QPKPDQ 51
MPPK+Q++A E KK+KI+EDKTFGLKNK +K QK+++ + V Q P Q
Sbjct: 1 MPPKKQAQAGGSKKAEQKKKEKIIEDKTFGLKNKKGAKQ-QKFIKAVTHQVKFGQQNPRQ 59
Query: 52 ---SKVAAKKKKEEEKAKEKELNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKC 108
S+ K KK+++K + +ELN+LFK V+ K+ G DPKS++C F+K GQC KG KC
Sbjct: 60 VAQSEAEKKLKKDDKKKELQELNELFKPVVAAQKISKGADPKSVVCAFFKQGQCTKGDKC 119
Query: 109 KFSHDLNVQRKGEKIDIYSDKRD----KETMEDWDQETLEKVVESKNKEYQQNKP-TDIV 163
KFSHDL ++RK EK +Y D RD K+TM++WD++ LE+VV K+ E ++ KP T IV
Sbjct: 120 KFSHDLTLERKCEKRSVYIDARDEELEKDTMDNWDEKKLEEVVNKKHGEAEKKKPKTQIV 179
Query: 164 CKYFLEAVEKKQYGWFWVCPNGGKDCHYRHALPPGYVLKSQMKALLEEEAEKITIEEEIE 223
C++FLEA+E +YGWFWVCP GG +C YRHALPPG+VLK K EE+ ++I++E+ IE
Sbjct: 180 CRHFLEAIENNKYGWFWVCPGGGDNCMYRHALPPGFVLKKDKKK--EEKEDEISLEDLIE 237
Query: 224 NQRAKIT-TTTPMTPELFTEWKKKKIAERDAGLAAERAERAKNDRMSGRELFLSDSSWF 281
+R+ + T +T E F WKK+K E+ L + ER K D +G+ L +S F
Sbjct: 238 RERSALGPNVTKITLESFLAWKKRKRQEKIDKLEQD-MERRKADFKAGKALVISGREVF 295
>sp|Q3TIV5|ZC3HF_MOUSE Zinc finger CCCH domain-containing protein 15 OS=Mus musculus
GN=Zc3h15 PE=1 SV=2
Length = 426
Score = 214 bits (546), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 140/299 (46%), Positives = 196/299 (65%), Gaps = 22/299 (7%)
Query: 1 MPPKQQSKA------ELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNV---QPKPDQ 51
MPPK+Q++A E KK+KI+EDKTFGLKNK +K QK+++ + V Q P Q
Sbjct: 1 MPPKKQAQAGGSKKAEQKKKEKIIEDKTFGLKNKKGAKQ-QKFIKAVTHQVKFGQQNPRQ 59
Query: 52 ---SKVAAKKKKEEEKAKEKELNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKC 108
S+ K KK+++K + +ELN+LFK V+ K+ G DPKS++C F+K GQC KG KC
Sbjct: 60 VAQSEAEKKLKKDDKKKELQELNELFKPVVAAQKISKGADPKSVVCAFFKQGQCTKGDKC 119
Query: 109 KFSHDLNVQRKGEKIDIYSDKRD----KETMEDWDQETLEKVVESKNKEYQQNKP-TDIV 163
KFSHDL ++RK EK +Y D RD K+TM++WD++ LE+VV K+ E ++ KP T IV
Sbjct: 120 KFSHDLTLERKCEKRSVYIDARDEELEKDTMDNWDEKKLEEVVNKKHGEAEKKKPKTQIV 179
Query: 164 CKYFLEAVEKKQYGWFWVCPNGGKDCHYRHALPPGYVLKSQMKALLEEEAEKITIEEEIE 223
C++FLEA+E +YGWFWVCP GG +C YRHALPPG+VLK K EE+ ++I++E+ IE
Sbjct: 180 CRHFLEAIENNKYGWFWVCPGGGDNCMYRHALPPGFVLKKDKKK--EEKEDEISLEDLIE 237
Query: 224 NQRAKIT-TTTPMTPELFTEWKKKKIAERDAGLAAERAERAKNDRMSGRELFLSDSSWF 281
+R+ + T +T E F WKK+K E+ L + ER K D +G+ L +S F
Sbjct: 238 RERSALGPNVTKITLESFLAWKKRKRQEKIDKLEQD-MERRKADFKAGKALVISGREVF 295
>sp|Q8WU90|ZC3HF_HUMAN Zinc finger CCCH domain-containing protein 15 OS=Homo sapiens
GN=ZC3H15 PE=1 SV=1
Length = 426
Score = 214 bits (545), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 159/376 (42%), Positives = 218/376 (57%), Gaps = 37/376 (9%)
Query: 1 MPPKQQSKA------ELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNV---QPKPDQ 51
MPPK+Q++A E KK+KI+EDKTFGLKNK +K QK+++ + V Q P Q
Sbjct: 1 MPPKKQAQAGGSKKAEQKKKEKIIEDKTFGLKNKKGAKQ-QKFIKAVTHQVKFGQQNPRQ 59
Query: 52 ---SKVAAKKKKEEEKAKEKELNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKC 108
S+ K KK+++K + +ELN+LFK V+ K+ G DPKS++C F+K GQC KG KC
Sbjct: 60 VAQSEAEKKLKKDDKKKELQELNELFKPVVAAQKISKGADPKSVVCAFFKQGQCTKGDKC 119
Query: 109 KFSHDLNVQRKGEKIDIYSDKRD----KETMEDWDQETLEKVVESKNKEYQQNKP-TDIV 163
KFSHDL ++RK EK +Y D RD K+TM++WD++ LE+VV K+ E ++ KP T IV
Sbjct: 120 KFSHDLTLERKCEKRSVYIDARDEELEKDTMDNWDEKKLEEVVNKKHGEAEKKKPKTQIV 179
Query: 164 CKYFLEAVEKKQYGWFWVCPNGGKDCHYRHALPPGYVLKSQMKALLEEEAEKITIEEEIE 223
CK+FLEA+E +YGWFWVCP GG C YRHALPPG+VLK K EE+ ++I++E+ IE
Sbjct: 180 CKHFLEAIENNKYGWFWVCPGGGDICMYRHALPPGFVLKKDKKK--EEKEDEISLEDLIE 237
Query: 224 NQRAKIT-TTTPMTPELFTEWKKKKIAERDAGLAAERAERAKNDRMSGRELFLSDSSWFV 282
+R+ + T +T E F WKK+K E+ L + ER K D +G+ L +S F
Sbjct: 238 RERSALGPNVTKITLESFLAWKKRKRQEKIDKLEQD-MERRKADFKAGKALVISGREVFE 296
Query: 283 DDAEAYDKYQREEESHVTEQKANGNSARDGPSNSAKAGQEDEVVPDDDDEL----DMDEL 338
E + E + Q G+ D S V D D L D+DE
Sbjct: 297 FRPELVNDDDEEADDTRYTQGTGGDEVDDSVS-----------VNDIDLSLYIPRDVDET 345
Query: 339 NELEASLAKTSIQIQD 354
ASL + S D
Sbjct: 346 GITVASLERFSTYTSD 361
>sp|Q803J8|ZC3HF_DANRE Zinc finger CCCH domain-containing protein 15 OS=Danio rerio
GN=zc3h15 PE=2 SV=1
Length = 433
Score = 214 bits (545), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 128/273 (46%), Positives = 174/273 (63%), Gaps = 16/273 (5%)
Query: 22 TFGLKNKNKSKNVQKYVQNLKQNVQPKPDQSKVAAKKKKEEEKAKE------KELNDLFK 75
TFGLKNK +K QK+++ + Q V+ ++ A + E+ K K+ ELN+LFK
Sbjct: 28 TFGLKNKKGAKQ-QKFIKAVTQQVKFGQQNARQIAAAESEKTKKKDDKKKELSELNELFK 86
Query: 76 IAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRD---- 131
V+ KV GVDPKS+LC F+K GQC KG KCKFSHDL+++RK EK +Y D RD
Sbjct: 87 PVVAAQKVSKGVDPKSVLCAFFKQGQCTKGDKCKFSHDLSLERKCEKRSLYVDGRDDELL 146
Query: 132 -KETMEDWDQETLEKVVESKNKEYQQNKP-TDIVCKYFLEAVEKKQYGWFWVCPNGGKDC 189
K+TME+WD++ LE+VV K+ E ++ K T IVCKYFL+A+E +YGWFWVCP GG +C
Sbjct: 147 EKDTMENWDEKKLEEVVNKKHGEAEKKKAKTQIVCKYFLDAIENNKYGWFWVCPGGGDNC 206
Query: 190 HYRHALPPGYVLKSQMKALLEEEAEKITIEEEIENQRAKI-TTTTPMTPELFTEWKKKKI 248
YRHALP G+VLK K E+ E+I++E+ IE +R+ + T +T E F WKK+K
Sbjct: 207 MYRHALPVGFVLKKDKKN-EEKNEEEISLEDLIETERSLLGANVTRITLETFLAWKKRKR 265
Query: 249 AERDAGLAAERAERAKNDRMSGRELFLSDSSWF 281
E+ A A + ER K D +GR L +S F
Sbjct: 266 QEKLAK-AEQDMERKKADFKAGRALGVSGREVF 297
>sp|Q7JWR9|ZC3HF_DROME Zinc finger CCCH domain-containing protein 15 homolog OS=Drosophila
melanogaster GN=CG8635 PE=1 SV=1
Length = 404
Score = 214 bits (545), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 149/313 (47%), Positives = 200/313 (63%), Gaps = 25/313 (7%)
Query: 2 PPKQQSKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNVQP---KPDQSKVAAKK 58
PP K E KK+K++EDKTFGLKNK +K QK++Q +++ VQ P Q K+
Sbjct: 7 PPGPSKKTEQKKKEKVIEDKTFGLKNKKGNKQ-QKFIQQVQKQVQSGGQHPRQDGDKRKE 65
Query: 59 KKEEEKAKEKELNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQR 118
+KE++ A+++E+ +FK +Q KV G DPKS++C F+K G C KG KCKFSHDL+ +
Sbjct: 66 EKEKKLAEQREMALIFKPVQTQ-KVEKGTDPKSVVCAFFKQGTCTKGDKCKFSHDLSQEN 124
Query: 119 KGEKIDIYSDKRDKE-TMEDWDQETLEKVVESKNKEYQQNKPTDIVCKYFLEAVEKKQYG 177
K EK IY D RD++ M +WD L++VVE K+ +Q TDI+CK+FLEAVEK +YG
Sbjct: 125 KVEKRSIYVDMRDEDDPMTNWDDAKLKEVVEKKSSGEKQRPTTDIICKFFLEAVEKSKYG 184
Query: 178 WFWVCPNGGKDCHYRHALPPGYVLKSQMKALLEEEAEKITIEEEIENQRAKITTT-TPMT 236
WFW CPNGGK C YRHALP GYVLK K EE+ +I++ + IE +RA + T +T
Sbjct: 185 WFWECPNGGK-CIYRHALPAGYVLKRDKKK--EEKPTEISLVDLIEKERAALGPNQTRVT 241
Query: 237 PELFTEWKKKKIAERDAGLAAERAERAKND-------RMSGRELFLSDSSWFVDDA---- 285
E F WKK+KIAE+ A LAAE ER K+D +SGRE+F S + VDD
Sbjct: 242 LESFLAWKKRKIAEKKAKLAAEE-ERKKSDFSKGKQFGISGREMF-SFNPDLVDDGPMEE 299
Query: 286 --EAYDKYQREEE 296
A+D Y RE++
Sbjct: 300 GDAAFDVYNREDD 312
>sp|Q1RMM1|ZC3HF_BOVIN Zinc finger CCCH domain-containing protein 15 OS=Bos taurus
GN=ZC3H15 PE=2 SV=1
Length = 426
Score = 213 bits (543), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 141/299 (47%), Positives = 195/299 (65%), Gaps = 22/299 (7%)
Query: 1 MPPKQQSKA------ELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNV---QPKPDQ 51
MPPK+Q++A E KK+KI+EDKTFGLKNK +K QK+++ + V Q P Q
Sbjct: 1 MPPKKQAQAGGSKKAEQKKKEKIIEDKTFGLKNKKGAKQ-QKFIKAVTHQVKFGQQNPRQ 59
Query: 52 ---SKVAAKKKKEEEKAKEKELNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKC 108
S+ K KK+++K + +ELN+LFK V+ K+ G DPKS++C F+K GQC KG KC
Sbjct: 60 VAQSEAEKKLKKDDKKKELQELNELFKPVVAAQKISKGADPKSVVCAFFKQGQCTKGDKC 119
Query: 109 KFSHDLNVQRKGEKIDIYSDKRD----KETMEDWDQETLEKVVESKNKEYQQNKP-TDIV 163
KFSHDL ++RK EK +Y D RD K+TM++WD++ LE+VV K+ E ++ KP T IV
Sbjct: 120 KFSHDLTLERKCEKRSVYIDARDEELEKDTMDNWDEKKLEEVVNKKHGEAEKKKPKTQIV 179
Query: 164 CKYFLEAVEKKQYGWFWVCPNGGKDCHYRHALPPGYVLKSQMKALLEEEAEKITIEEEIE 223
CK+FLEA+E +YGWFWVCP GG C YRHALPPG+VLK K EE+ ++I++E+ IE
Sbjct: 180 CKHFLEAIENNKYGWFWVCPGGGDICMYRHALPPGFVLKKDKKK--EEKEDEISLEDLIE 237
Query: 224 NQRAKIT-TTTPMTPELFTEWKKKKIAERDAGLAAERAERAKNDRMSGRELFLSDSSWF 281
+R+ + T +T E F WKK+K E+ L + ER K D +G+ L +S F
Sbjct: 238 RERSALGPNVTKITLESFLAWKKRKRQEKIDKLEQD-IERRKADFKAGKALVISGREVF 295
>sp|Q5H7N8|ZC3HF_CHICK Zinc finger CCCH domain-containing protein 15 OS=Gallus gallus
GN=ZC3H15 PE=1 SV=1
Length = 429
Score = 207 bits (527), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 141/300 (47%), Positives = 196/300 (65%), Gaps = 23/300 (7%)
Query: 1 MPPKQQSK-------AELAKKQKIVEDKTFGLKNKNKSKNVQKY---VQNLKQNVQPKPD 50
MPPK+Q + A+ KK+KI+EDKTFGLKNK +K QK+ V +L + Q P
Sbjct: 1 MPPKKQQQPAGSSKKADQKKKEKIIEDKTFGLKNKKGAKQ-QKFFKAVTHLVKFGQQYPR 59
Query: 51 Q---SKVAAKKKKEEEKAKEKELNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFK 107
Q ++ K KKE++K + +ELN+LFK V+ K+ G DPKS++C F+K GQC KG K
Sbjct: 60 QAAQTESEKKLKKEDKKKELQELNELFKPVVAAQKISKGADPKSVVCAFFKQGQCTKGDK 119
Query: 108 CKFSHDLNVQRKGEKIDIYSDKRD----KETMEDWDQETLEKVVESKNKEYQQNKP-TDI 162
CKFSHDL+++RK EK +Y D RD K+TM++WD++ LE+VV K+ E ++ KP T I
Sbjct: 120 CKFSHDLSLERKCEKRSVYIDARDEDLEKDTMDNWDEKKLEEVVNKKHGEAEKKKPKTQI 179
Query: 163 VCKYFLEAVEKKQYGWFWVCPNGGKDCHYRHALPPGYVLKSQMKALLEEEAEKITIEEEI 222
VCKYFL+A+E +YGWFWVCP GG +C YRHALPPG+VLK K EE+ ++I++E+ I
Sbjct: 180 VCKYFLDAIENNKYGWFWVCPGGGDNCMYRHALPPGFVLKKDKKK--EEKQDEISLEDLI 237
Query: 223 ENQRAKIT-TTTPMTPELFTEWKKKKIAERDAGLAAERAERAKNDRMSGRELFLSDSSWF 281
E +RA + T +T E F WK++K E+ A + ER K D +G+ L +S F
Sbjct: 238 EKERAALGPNVTKITLECFIAWKRRKRQEK-IDKAEQDMERRKADFKAGKALVISGREVF 296
>sp|Q28Y69|ZC3HF_DROPS Zinc finger CCCH domain-containing protein 15 homolog OS=Drosophila
pseudoobscura pseudoobscura GN=GA21225 PE=3 SV=1
Length = 406
Score = 207 bits (526), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 144/320 (45%), Positives = 201/320 (62%), Gaps = 31/320 (9%)
Query: 1 MPPKQ-----QSKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNVQP---KPDQS 52
MPPK+ K E KK+K++EDKTFGLKNK +K QK++Q +++ VQ P Q
Sbjct: 1 MPPKKAPAGPSKKTEQKKKEKVIEDKTFGLKNKKGNKQ-QKFIQQVQKQVQAGGHHPRQD 59
Query: 53 KVAAKKKKEEEKAKEKELNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSH 112
K +KE++ A +E+ +FK +Q KV G DPKS++C F+K G C KG KCKFSH
Sbjct: 60 GDKKKDEKEKKLADLREMASIFKPVQTQ-KVDKGTDPKSVVCAFFKQGLCTKGDKCKFSH 118
Query: 113 DLNVQRKGEKIDIYSDKRDKE--TMEDWDQETLEKVVESKNKEYQQNKPTDIVCKYFLEA 170
DL+++ K EK +Y D RD E M +WD L++VV+ K+ E ++ T+I+CK+FLEA
Sbjct: 119 DLSLENKVEKRSMYVDMRDNEDDLMTNWDDAKLKEVVDKKHSEEKRRPTTEIICKFFLEA 178
Query: 171 VEKKQYGWFWVCPNGGKDCHYRHALPPGYVLKSQMKALLEEEAEKITIEEEIENQRAKIT 230
VEK +YGWFW CPNG K C YRHALPPGYVLK K E++ +I++ + IE +RA +
Sbjct: 179 VEKSKYGWFWECPNGEK-CIYRHALPPGYVLKRDKKK--EDKPTEISLVDLIEKERAALG 235
Query: 231 TT-TPMTPELFTEWKKKKIAERDAGLAAERAERAKND-------RMSGRELFLSDSSWFV 282
+ T +T E F WKK+K+ E+ A + AE ER K+D +SGRE+F S + V
Sbjct: 236 SNQTRVTLETFLAWKKRKLQEKKAKMVAEE-ERKKSDFSKGKQFGISGREMF-SFNPDLV 293
Query: 283 DDA------EAYDKYQREEE 296
DD A+D Y+RE++
Sbjct: 294 DDGPIEEGDAAFDVYKREDD 313
>sp|Q9USV4|MEP33_SCHPO mRNA export protein 33 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=mep33 PE=2 SV=1
Length = 292
Score = 109 bits (273), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 106/335 (31%), Positives = 157/335 (46%), Gaps = 77/335 (22%)
Query: 1 MPPKQQSKAE-----LAKK--QKIVEDKTFGLKNKNKSKNVQKYVQNLKQNVQPKPDQSK 53
MPPK+ +K + AKK K D TFGLKNKN+S VQ ++ ++QN +
Sbjct: 1 MPPKKAAKGKGDPGKAAKKDPTKKAADATFGLKNKNRSTKVQAKIRQIEQNA------AA 54
Query: 54 VAAKKKKEEEKAKEKELNDLFKIAVSQPK-------VPVGVDPKSILCEFYKAGQCQKGF 106
+K K +E +++ + ++ + +P P++ L + + QK
Sbjct: 55 SGSKDAKRQEALRKRREEEKRAAEAAKAEVAALFNAIPKKQTPQNFLTRKEEVKESQK-- 112
Query: 107 KCKFSHDLNVQRKGEKIDIYSDKRDKETMEDWDQETLEKVVESKNKEYQQNKP---TDIV 163
ID+YSD RD++T LEK +P TDIV
Sbjct: 113 ----------------IDLYSDVRDQQT-----DLPLEK------------RPWINTDIV 139
Query: 164 CKYFLEAVEKKQYGWFWVCPNGGKDCHYRHALPPGYVLKSQMKALLEEEAEKITIEEEIE 223
CK+FLEA E +YGW W CPNG C Y+HALP GYVL K ++ E+I++E IE
Sbjct: 140 CKFFLEACETGKYGWLWQCPNGNMTCIYKHALPYGYVLSRDKKK--DDTKEEISLEAFIE 197
Query: 224 NQRAKIT-TTTPMTPELFTEWKKKKIAERDAGLAAERAERAKNDR------MSGRELFLS 276
+R ++ TP+T E F +W RD L ++AE +++R +SGRE F S
Sbjct: 198 IERHRLGPNLTPVTEENFKKWSD---GRRDRIL--KQAEERRSNRAVGRSNLSGREYFES 252
Query: 277 D---SSWFVDDAEAYD--KYQREEESHVTEQKANG 306
+ + V D E +D +RE E+ Q A
Sbjct: 253 NKDKTHEVVGDEEDWDFSALRRETEALAKAQDATA 287
>sp|Q60764|MKRN3_MOUSE Probable E3 ubiquitin-protein ligase makorin-3 OS=Mus musculus
GN=Mkrn3 PE=2 SV=2
Length = 544
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 28/43 (65%)
Query: 77 AVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRK 119
A S P+ G K ILC +Y GQC++G C++SHDL+ +R+
Sbjct: 81 ARSGPERNSGSWTKQILCRYYLHGQCKEGDNCRYSHDLSGRRR 123
>sp|Q6GLT5|MKRN1_XENLA Probable E3 ubiquitin-protein ligase makorin-1 OS=Xenopus laevis
GN=mkrn1 PE=2 SV=1
Length = 408
Score = 40.4 bits (93), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 84 PVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQR 118
PVGV + + C ++ G C++G C++SHDL R
Sbjct: 30 PVGVWTRHVTCRYFIHGVCKEGINCRYSHDLATSR 64
>sp|Q13064|MKRN3_HUMAN Probable E3 ubiquitin-protein ligase makorin-3 OS=Homo sapiens
GN=MKRN3 PE=1 SV=1
Length = 507
Score = 39.3 bits (90), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 86 GVDPKSILCEFYKAGQCQKGFKCKFSHDLN 115
G+ K I+C +Y GQC++G C++SHDL+
Sbjct: 93 GIWTKQIICRYYIHGQCKEGENCRYSHDLS 122
>sp|Q657B3|C3H7_ORYSJ Zinc finger CCCH domain-containing protein 7 OS=Oryza sativa subsp.
japonica GN=Os01g0572100 PE=2 SV=1
Length = 698
Score = 39.3 bits (90), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 84 PVGVDPKSI-LCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYS 127
PV + PK + +C FY G+CQ+G CKFSHD K + Y+
Sbjct: 425 PV-IKPKVVKVCHFYLHGKCQQGNLCKFSHDTTPLTKSKPCTHYA 468
>sp|Q9LTS7|C3H65_ARATH Zinc finger CCCH domain-containing protein 65 OS=Arabidopsis
thaliana GN=EMB1789 PE=2 SV=1
Length = 675
Score = 38.1 bits (87), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 84 PVGVDPKSI-LCEFYKAGQCQKGFKCKFSHD 113
PV PK I C Y G+C +G KCKFSHD
Sbjct: 345 PVAPKPKPIKYCRHYLKGRCHEGDKCKFSHD 375
>sp|Q6ZPZ3|ZC3H4_MOUSE Zinc finger CCCH domain-containing protein 4 OS=Mus musculus
GN=Zc3h4 PE=1 SV=2
Length = 1304
Score = 37.0 bits (84), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 92 ILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIY 126
++C+++ G+C G C FSHD+ + +K E Y
Sbjct: 393 VICKYFVEGRCTWGDHCNFSHDIELPKKRELCKFY 427
>sp|Q5ZA07|C3H41_ORYSJ E3 ubiquitin-protein ligase makorin OS=Oryza sativa subsp. japonica
GN=MKRN PE=2 SV=1
Length = 368
Score = 36.2 bits (82), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 90 KSILCEFYKAGQCQKGFKCKFSHDLNVQ 117
K +LC+F+ G C KG C+FSHD N Q
Sbjct: 4 KRVLCKFFMHGACLKGEYCEFSHDWNDQ 31
>sp|Q8BYK8|ZC3H6_MOUSE Zinc finger CCCH domain-containing protein 6 OS=Mus musculus
GN=Zc3h6 PE=2 SV=2
Length = 1177
Score = 36.2 bits (82), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 93 LCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIY 126
+C+++ G+C KG CKF+HD +++K E Y
Sbjct: 275 ICKYFLEGRCIKGDHCKFNHDAELEKKKEVCKYY 308
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 17/21 (80%), Gaps = 1/21 (4%)
Query: 94 CEFYKAG-QCQKGFKCKFSHD 113
C+FY +G +C +G KCKFSHD
Sbjct: 328 CKFYHSGAKCYQGDKCKFSHD 348
Score = 31.6 bits (70), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 14/66 (21%)
Query: 93 LCEFYKAGQCQKG---------FKCKFSHDLNVQRKGEKIDIYSDKRDKETMEDWDQETL 143
+C++Y G C KG F CKF H +G+K D KET ++ L
Sbjct: 304 VCKYYLQGYCTKGENCIYMHSEFPCKFYHSGAKCYQGDKCKFSHDDLTKET-----RKLL 358
Query: 144 EKVVES 149
+KV+ +
Sbjct: 359 DKVLNA 364
>sp|Q6C007|CWC2_YARLI Pre-mRNA-splicing factor CWC2 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=CWC2 PE=3 SV=1
Length = 382
Score = 36.2 bits (82), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%)
Query: 60 KEEEKAKEKELNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNV 116
KE+EK +K+ + IA P S C ++ G C +G KC+F H L V
Sbjct: 95 KEDEKFNQKKADGRCSIARDSGYTRADKVPGSYFCLYFARGLCTQGHKCEFLHRLPV 151
>sp|B0F0H3|MKRN2_XENLA Probable E3 ubiquitin-protein ligase makorin-2 OS=Xenopus laevis
GN=mkrn2 PE=2 SV=2
Length = 409
Score = 35.4 bits (80), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 87 VDPKSILCEFYKAGQCQKGFKCKFSHDL 114
+ PK + C ++ G C++G +C FSHDL
Sbjct: 1 MSPKQVTCRYFLHGVCREGSRCLFSHDL 28
>sp|E0X9N4|C3H69_ARATH Zinc finger CCCH domain-containing protein 69 OS=Arabidopsis
thaliana GN=At3g63550 PE=3 SV=1
Length = 350
Score = 35.4 bits (80), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 90 KSILCEFYKAGQCQKGFKCKFSHD 113
K ILC+F+ G C KG C+FSHD
Sbjct: 3 KRILCKFFAHGACLKGEHCEFSHD 26
>sp|P61129|ZC3H6_HUMAN Zinc finger CCCH domain-containing protein 6 OS=Homo sapiens
GN=ZC3H6 PE=2 SV=2
Length = 1189
Score = 35.4 bits (80), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 93 LCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIY 126
+C+++ G+C KG +CKF HD ++++ E Y
Sbjct: 277 ICKYFLEGRCIKGDQCKFDHDAELEKRKEICKFY 310
>sp|Q2UL89|DUS3_ASPOR tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Aspergillus oryzae
(strain ATCC 42149 / RIB 40) GN=dus3 PE=3 SV=1
Length = 730
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 86 GVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRK 119
G+ P I + G CQ G KC+F HDL K
Sbjct: 127 GLCPSRIFTPEFSPGACQWGEKCRFEHDLRTYLK 160
>sp|Q4WKD9|YTH1_ASPFU mRNA 3'-end-processing protein yth1 OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=yth1
PE=3 SV=1
Length = 254
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 43/97 (44%), Gaps = 21/97 (21%)
Query: 91 SILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKID-------------IYSDKRDKETM-- 135
S++C+ + G C+KG KC++ H+ N++R E +Y R++ +
Sbjct: 89 SLVCKHFLKGLCKKGLKCEYLHEYNLRRMPECQSFSRSGYCPNGDDCLYQHVREQARLPP 148
Query: 136 -EDWDQETLEKVVESKNKEYQQNKPTDIVCKYFLEAV 171
E++DQ E + ++ +CKY+L
Sbjct: 149 CENYDQGFCELGPLCSKRHVRRR-----LCKYYLAGF 180
>sp|Q9FKR9|C3H59_ARATH Zinc finger CCCH domain-containing protein 59 OS=Arabidopsis
thaliana GN=ZFWD3 PE=2 SV=1
Length = 472
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 88 DPKSILCEFYKAGQCQKGFKCKFSHD 113
PK +C F+K G C+KG KC+F H
Sbjct: 145 SPKKSVCNFWKDGNCKKGEKCQFLHS 170
>sp|Q6P158|DHX57_HUMAN Putative ATP-dependent RNA helicase DHX57 OS=Homo sapiens GN=DHX57
PE=1 SV=2
Length = 1386
Score = 33.9 bits (76), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 32/67 (47%)
Query: 93 LCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRDKETMEDWDQETLEKVVESKNK 152
+C+FY G C+ G KC+F H++ + +I+ D +ED ++ SK+
Sbjct: 304 ICKFYLKGNCKFGSKCRFKHEVPPNQIVGRIERSVDDSHLNAIEDASFLYELEIRFSKDH 363
Query: 153 EYQQNKP 159
+Y P
Sbjct: 364 KYPYQAP 370
>sp|P0CR50|SLT11_CRYNJ Pre-mRNA-splicing factor SLT11 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=SLT11 PE=3 SV=1
Length = 326
Score = 33.5 bits (75), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 21/104 (20%)
Query: 18 VEDKTFGLKNKNKSKNVQK--YVQNLKQNVQPKPDQSKVAAKKKKEEEKAKEKELNDLFK 75
V D K + S ++ K Y+QNL+ + PD A + +A + L +L +
Sbjct: 92 VRDAALARKAQAPSSDINKQYYIQNLEAQMAESPDG---LAYDSEVANRAGREMLKNLAR 148
Query: 76 IAVSQPKVPVGVDP-----KSILCEFYKAGQCQKGFKCKFSHDL 114
DP + +C F+ G+C++G +C F H++
Sbjct: 149 -----------TDPYYKRNRPHICSFFVKGECKRGAECPFRHEM 181
>sp|P0CR51|SLT11_CRYNB Pre-mRNA-splicing factor SLT11 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=SLT11 PE=3
SV=1
Length = 326
Score = 33.5 bits (75), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 21/104 (20%)
Query: 18 VEDKTFGLKNKNKSKNVQK--YVQNLKQNVQPKPDQSKVAAKKKKEEEKAKEKELNDLFK 75
V D K + S ++ K Y+QNL+ + PD A + +A + L +L +
Sbjct: 92 VRDAALARKAQAPSSDINKQYYIQNLEAQMAESPDG---LAYDSEVANRAGREMLKNLAR 148
Query: 76 IAVSQPKVPVGVDP-----KSILCEFYKAGQCQKGFKCKFSHDL 114
DP + +C F+ G+C++G +C F H++
Sbjct: 149 -----------TDPYYKRNRPHICSFFVKGECKRGAECPFRHEM 181
>sp|Q5BGN2|YTH1_EMENI mRNA 3'-end-processing protein yth1 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=yth1 PE=3 SV=1
Length = 254
Score = 33.5 bits (75), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 91 SILCEFYKAGQCQKGFKCKFSHDLNVQRKGE 121
S++C+ + G C+KG KC++ H+ N++R E
Sbjct: 89 SLVCKHFLKGLCKKGMKCEYLHEYNLRRMPE 119
>sp|Q2URI6|YTH1_ASPOR mRNA 3'-end-processing protein yth1 OS=Aspergillus oryzae (strain
ATCC 42149 / RIB 40) GN=yth1 PE=3 SV=1
Length = 255
Score = 33.1 bits (74), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 91 SILCEFYKAGQCQKGFKCKFSHDLNVQRKGE 121
S++C+ + G C+KG KC++ H+ N++R E
Sbjct: 89 SLVCKHFLKGLCKKGLKCEYLHEYNLRRMPE 119
>sp|Q8N5P1|ZC3H8_HUMAN Zinc finger CCCH domain-containing protein 8 OS=Homo sapiens
GN=ZC3H8 PE=1 SV=2
Length = 291
Score = 32.7 bits (73), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 93 LCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIY 126
+C+++ +C KG +CKF HD +++K E Y
Sbjct: 196 ICKYFLERKCIKGDQCKFDHDAEIEKKKEMCKFY 229
>sp|O94721|YCF9_SCHPO RWD domain-containing protein C1393.09c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC1393.09c PE=4
SV=1
Length = 215
Score = 32.3 bits (72), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 16/58 (27%)
Query: 233 TPMTPELFTEWKKKKIAERDAGLAAERAERAKND----------------RMSGRELF 274
TP+T E FTEWKK A R+ L E+ + K RM+GRELF
Sbjct: 144 TPVTVESFTEWKKGFDAWRNEQLKLEQESKLKEALSAASSSNARKAILEKRMTGRELF 201
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.308 0.126 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 140,484,913
Number of Sequences: 539616
Number of extensions: 6238367
Number of successful extensions: 36161
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 472
Number of HSP's that attempted gapping in prelim test: 32892
Number of HSP's gapped (non-prelim): 2641
length of query: 359
length of database: 191,569,459
effective HSP length: 119
effective length of query: 240
effective length of database: 127,355,155
effective search space: 30565237200
effective search space used: 30565237200
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 62 (28.5 bits)