Query 018223
Match_columns 359
No_of_seqs 208 out of 388
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 11:51:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018223.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018223hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a9a_C Translation machinery-a 99.7 2.2E-17 7.5E-22 144.2 3.8 63 211-277 12-76 (142)
2 2rhk_C Cleavage and polyadenyl 99.5 4.6E-15 1.6E-19 115.7 3.5 64 84-200 9-72 (72)
3 2d9n_A Cleavage and polyadenyl 99.5 1.4E-14 4.9E-19 113.6 4.8 62 84-198 3-64 (77)
4 2cqe_A KIAA1064 protein; CCCH 99.2 6.2E-12 2.1E-16 103.2 4.0 55 86-197 8-62 (98)
5 1m9o_A Tristetraproline; Cys3H 99.0 2.6E-10 8.9E-15 88.0 3.1 69 86-197 7-76 (77)
6 3d2q_A Muscleblind-like protei 98.9 4.2E-10 1.5E-14 86.8 2.6 60 90-196 5-65 (70)
7 2e5s_A Otthump00000018578; ZF- 98.8 5.5E-10 1.9E-14 91.8 1.6 63 87-196 15-79 (98)
8 3d2n_A Muscleblind-like protei 98.6 1.5E-08 5.2E-13 81.1 1.6 59 89-196 7-66 (83)
9 2rpp_A Muscleblind-like protei 98.4 1.1E-07 3.8E-12 77.2 2.9 58 90-196 16-74 (89)
10 3u9g_A Zinc finger CCCH-type a 96.8 0.00037 1.3E-08 65.1 2.2 87 92-197 90-199 (229)
11 2cqe_A KIAA1064 protein; CCCH 96.2 0.0015 5.1E-08 53.3 1.5 26 91-116 36-62 (98)
12 2d9n_A Cleavage and polyadenyl 95.9 0.0037 1.3E-07 48.5 2.4 29 158-197 7-35 (77)
13 3d2q_A Muscleblind-like protei 95.5 0.0042 1.4E-07 47.5 1.4 26 89-115 40-65 (70)
14 1m9o_A Tristetraproline; Cys3H 94.8 0.0048 1.7E-07 47.0 0.0 28 88-115 47-75 (77)
15 2rhk_C Cleavage and polyadenyl 94.6 0.01 3.5E-07 45.8 1.4 26 90-116 43-69 (72)
16 2d9m_A Zinc finger CCCH-type d 94.4 0.019 6.5E-07 44.7 2.5 27 90-116 19-45 (69)
17 2e5s_A Otthump00000018578; ZF- 94.3 0.015 5E-07 47.6 1.6 28 88-116 53-80 (98)
18 3u1l_A PRE-mRNA-splicing facto 93.6 0.018 6.3E-07 53.6 1.1 27 160-197 69-95 (240)
19 3d2n_A Muscleblind-like protei 92.9 0.029 1E-06 44.6 1.2 26 90-116 42-67 (83)
20 2fc6_A Nuclear, target of EGR1 92.3 0.039 1.4E-06 40.5 1.1 27 159-195 18-44 (50)
21 3u1l_A PRE-mRNA-splicing facto 90.1 0.08 2.7E-06 49.3 1.0 27 91-117 70-96 (240)
22 2lhn_A Nuclear polyadenylated 88.8 0.072 2.4E-06 42.4 0.0 27 161-203 52-78 (80)
23 2fc6_A Nuclear, target of EGR1 88.5 0.15 5E-06 37.5 1.2 28 89-116 18-46 (50)
24 2rpp_A Muscleblind-like protei 87.9 0.15 5.2E-06 41.0 1.1 26 90-116 50-75 (89)
25 1lup_A GSMTX2; inhibitor cyste 84.7 0.42 1.4E-05 31.8 1.7 18 177-201 4-21 (31)
26 2d9m_A Zinc finger CCCH-type d 82.6 0.52 1.8E-05 36.6 1.7 23 162-195 21-43 (69)
27 3u9g_A Zinc finger CCCH-type a 68.3 2.8 9.4E-05 39.2 2.8 27 90-117 174-200 (229)
28 3v33_A Ribonuclease ZC3H12A; r 59.4 2.2 7.4E-05 39.7 0.3 30 84-115 185-214 (223)
29 4fp9_B Mterf domain-containing 48.5 6.4 0.00022 38.1 1.7 19 233-251 260-278 (335)
30 2h9x_A Toxin CGNA; beta sheet; 35.5 16 0.00054 26.4 1.6 19 177-195 22-40 (47)
31 1sh1_A Neurotoxin I; NMR {Stic 28.2 11 0.00036 27.4 -0.3 18 177-194 21-38 (48)
32 1dj7_A Ferredoxin thioredoxin 26.6 15 0.0005 31.1 0.2 11 214-224 102-112 (117)
33 4g7w_A Putative uncharacterize 25.3 10 0.00036 32.3 -1.0 19 171-190 62-83 (160)
34 1atx_A ATX IA; SEA anemone tox 24.1 18 0.00063 26.0 0.3 16 177-192 22-37 (46)
35 4g7x_A Putative uncharacterize 22.4 7.8 0.00027 31.2 -2.1 19 171-190 45-66 (105)
36 2ca6_A RAN GTPase-activating p 21.7 24 0.00082 32.6 0.6 10 340-349 376-385 (386)
No 1
>4a9a_C Translation machinery-associated protein 46; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.66 E-value=2.2e-17 Score=144.23 Aligned_cols=63 Identities=33% Similarity=0.515 Sum_probs=52.3
Q ss_pred HHHhhhcHHHHHHHHHhcCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccceeeccC
Q 018223 211 EEAEKITIEEEIENQRAKITT--TTPMTPELFTEWKKKKIAERDAGLAAERAERAKNDRMSGRELFLSD 277 (359)
Q Consensus 211 ~~~~eisLEE~iE~ER~kL~~--gTPVT~EsFl~WKkkk~~Ek~~~~~k~kee~a~k~~LSGRELFe~d 277 (359)
+..++||||||||.||++|+. +||||+|||++||++++.++.+..++.+ .+.++|||+||..+
T Consensus 12 e~~~~ItlEe~iE~ER~kL~~~nlTpVT~EtF~~WKk~k~~ek~~~~~~~~----~kk~~tGRei~~~g 76 (142)
T 4a9a_C 12 EKQPKITLEEFIETERGKLDKSKLTPITIANFAQWKKDHVIAKINAEKKLS----SKRKPTGREIILKM 76 (142)
T ss_dssp CSCCCCCHHHHHHTTGGGSCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHH----TTSCCCHHHHHHHH
T ss_pred hcCCcCcHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHH----HhhhhhhHHHHHhc
Confidence 447899999999999999954 8999999999999999998865543322 34678999999974
No 2
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=99.51 E-value=4.6e-15 Score=115.67 Aligned_cols=64 Identities=27% Similarity=0.677 Sum_probs=53.5
Q ss_pred CCCCCCcchhhhhhhcccccCCCCCccCccccccccchhhhcccccccchhhccchHHHHHHHHHhhcccccCCCCchhh
Q 018223 84 PVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRDKETMEDWDQETLEKVVESKNKEYQQNKPTDIV 163 (359)
Q Consensus 84 ~~g~dpKsv~C~fFk~G~C~kG~kCkfSHd~~~~rk~eK~dlY~D~R~~dtmd~Wd~~kL~~Vv~~kh~~~~~~~~t~iv 163 (359)
..|..+++++|.||.+|.|.+|+.|+|||+++. ...++
T Consensus 9 ~~~~~~k~~vCk~fl~G~C~~G~~C~fsH~~~~------------------------------------------~~~~~ 46 (72)
T 2rhk_C 9 SHMSGEKTVVCKHWLRGLCKKGDQCEFLHEYDM------------------------------------------TKMSE 46 (72)
T ss_dssp CSSSCCCCSBCHHHHTTCCCCGGGSSSBCSCCT------------------------------------------TSCCB
T ss_pred ccCCCCcCeeCHHHhcCCCCCCCCCCCcccccc------------------------------------------ccCCc
Confidence 467889999999999999999999999999763 12348
Q ss_pred hhHHHHHHHhcccCcccccCCCCCCccccccCCCccc
Q 018223 164 CKYFLEAVEKKQYGWFWVCPNGGKDCHYRHALPPGYV 200 (359)
Q Consensus 164 CK~Fl~AvE~~kYGWfW~CPnGgd~C~yrH~LPpG~V 200 (359)
|+|||. +|.|++ +.|+|+|.+|++-|
T Consensus 47 C~~f~~---------~G~C~~--~~C~y~H~~p~~k~ 72 (72)
T 2rhk_C 47 CYFYSK---------FGECSN--KECPFLHIDPESKI 72 (72)
T ss_dssp CHHHHH---------HSCCSB--TTCCSBCCCCC---
T ss_pred ccccCC---------CCCCCC--CCeeccCCCccccC
Confidence 999998 479999 79999999998643
No 3
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=1.4e-14 Score=113.64 Aligned_cols=62 Identities=24% Similarity=0.674 Sum_probs=53.2
Q ss_pred CCCCCCcchhhhhhhcccccCCCCCccCccccccccchhhhcccccccchhhccchHHHHHHHHHhhcccccCCCCchhh
Q 018223 84 PVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRDKETMEDWDQETLEKVVESKNKEYQQNKPTDIV 163 (359)
Q Consensus 84 ~~g~dpKsv~C~fFk~G~C~kG~kCkfSHd~~~~rk~eK~dlY~D~R~~dtmd~Wd~~kL~~Vv~~kh~~~~~~~~t~iv 163 (359)
|.+...|+++|.||.+|.|.+|+.|+|||+++.. +..+
T Consensus 3 p~~~~~k~~~C~~fl~G~C~~G~~C~fsH~~~~~------------------------------------------~~~~ 40 (77)
T 2d9n_A 3 SGSSGEKTVVCKHWLRGLCKKGDQCEFLHEYDMT------------------------------------------KMPE 40 (77)
T ss_dssp CCCSCCTTSBCHHHHTTCCSCTTSSSSBCSCCTT------------------------------------------TSCB
T ss_pred CCCCCCcceeCHhHccCcCCCCCCCCCccccccC------------------------------------------cCCC
Confidence 6678899999999999999999999999998641 1238
Q ss_pred hhHHHHHHHhcccCcccccCCCCCCccccccCCCc
Q 018223 164 CKYFLEAVEKKQYGWFWVCPNGGKDCHYRHALPPG 198 (359)
Q Consensus 164 CK~Fl~AvE~~kYGWfW~CPnGgd~C~yrH~LPpG 198 (359)
|+|||. | +.|+ | +.|+|+|.+|+.
T Consensus 41 C~~f~~------~---G~C~-~-~~C~f~H~~~~~ 64 (77)
T 2d9n_A 41 CYFYSK------F---GECS-N-KECPFLHIDPES 64 (77)
T ss_dssp CHHHHH------T---CCCC-C-SSCSSBCCCTTS
T ss_pred CcccCC------C---CccC-C-CCeeccCCCccc
Confidence 999998 3 5999 5 899999999974
No 4
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=99.21 E-value=6.2e-12 Score=103.23 Aligned_cols=55 Identities=33% Similarity=0.728 Sum_probs=47.9
Q ss_pred CCCCcchhhhhhhcccccCCCCCccCccccccccchhhhcccccccchhhccchHHHHHHHHHhhcccccCCCCchhhhh
Q 018223 86 GVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRDKETMEDWDQETLEKVVESKNKEYQQNKPTDIVCK 165 (359)
Q Consensus 86 g~dpKsv~C~fFk~G~C~kG~kCkfSHd~~~~rk~eK~dlY~D~R~~dtmd~Wd~~kL~~Vv~~kh~~~~~~~~t~ivCK 165 (359)
.+.+|+++|.||.+|.|.+|++|+|+|+ ..+|+
T Consensus 8 ~~~~k~~lC~~f~~G~C~~G~~C~f~H~-----------------------------------------------~~~C~ 40 (98)
T 2cqe_A 8 ELPKKRELCKFYITGFCARAENCPYMHG-----------------------------------------------DFPCK 40 (98)
T ss_dssp CCSCCCSBCTTTTTTCCSCSTTCSSBSS-----------------------------------------------SSBCS
T ss_pred CCCCCCccCcccccCcCCCCCCCCCCCC-----------------------------------------------CCcCc
Confidence 4567999999999999999999999999 25799
Q ss_pred HHHHHHHhcccCcccccCCCCCCccccccCCC
Q 018223 166 YFLEAVEKKQYGWFWVCPNGGKDCHYRHALPP 197 (359)
Q Consensus 166 ~Fl~AvE~~kYGWfW~CPnGgd~C~yrH~LPp 197 (359)
||+. .+.|++| +.|+|.|.+.+
T Consensus 41 ~f~~---------~G~C~~G-~~C~f~H~~~~ 62 (98)
T 2cqe_A 41 LYHT---------TGNCING-DDCMFSHDPLT 62 (98)
T ss_dssp HHHH---------TSCCSSC-TTCSSBCCCCC
T ss_pred Cccc---------CCcCCCC-CCCcccCCCCc
Confidence 9975 2689998 99999999654
No 5
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=98.95 E-value=2.6e-10 Score=87.97 Aligned_cols=69 Identities=32% Similarity=0.668 Sum_probs=28.9
Q ss_pred CCCCcchhhhhh-hcccccCCCCCccCccccccccchhhhcccccccchhhccchHHHHHHHHHhhcccccCCCCchhhh
Q 018223 86 GVDPKSILCEFY-KAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRDKETMEDWDQETLEKVVESKNKEYQQNKPTDIVC 164 (359)
Q Consensus 86 g~dpKsv~C~fF-k~G~C~kG~kCkfSHd~~~~rk~eK~dlY~D~R~~dtmd~Wd~~kL~~Vv~~kh~~~~~~~~t~ivC 164 (359)
....|+.+|.|| +.|.|..|++|+|+|+...-|... .|. .....+|
T Consensus 7 ~~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~----------------------------~~~-----~~k~~~C 53 (77)
T 1m9o_A 7 SSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQAN----------------------------RHP-----KYKTELC 53 (77)
T ss_dssp SSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC-------------------------------------------
T ss_pred CCCccchhCHHhhhCCCcCCCCCccCCCCChhhcccc----------------------------ccc-----cccCCcc
Confidence 346799999999 599999999999999987543210 011 1223789
Q ss_pred hHHHHHHHhcccCcccccCCCCCCccccccCCC
Q 018223 165 KYFLEAVEKKQYGWFWVCPNGGKDCHYRHALPP 197 (359)
Q Consensus 165 K~Fl~AvE~~kYGWfW~CPnGgd~C~yrH~LPp 197 (359)
++|+. + +.||+| +.|+|.|..++
T Consensus 54 ~~f~~------~---G~C~~G-~~C~f~H~~~e 76 (77)
T 1m9o_A 54 HKFKL------Q---GRCPYG-SRCHFIHNPTE 76 (77)
T ss_dssp ---------------------------------
T ss_pred cchhh------C---cCCCCc-CcCCCCCCCCC
Confidence 98864 3 489998 99999998764
No 6
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=98.90 E-value=4.2e-10 Score=86.77 Aligned_cols=60 Identities=27% Similarity=0.644 Sum_probs=47.1
Q ss_pred cchhhhhhhcccccCCC-CCccCccccccccchhhhcccccccchhhccchHHHHHHHHHhhcccccCCCCchhhhhHHH
Q 018223 90 KSILCEFYKAGQCQKGF-KCKFSHDLNVQRKGEKIDIYSDKRDKETMEDWDQETLEKVVESKNKEYQQNKPTDIVCKYFL 168 (359)
Q Consensus 90 Ksv~C~fFk~G~C~kG~-kCkfSHd~~~~rk~eK~dlY~D~R~~dtmd~Wd~~kL~~Vv~~kh~~~~~~~~t~ivCK~Fl 168 (359)
+..+|.+|.+|.|.+|+ .|+|||+..... . ......-.||++||
T Consensus 5 k~~vC~~f~~G~C~rg~~~C~f~H~~~~~~--------~---------------------------~~~~~~~~vC~~fl 49 (70)
T 3d2q_A 5 RLEVCREYQRGNCNRGENDCRFAHPADSTM--------I---------------------------DTNDNTVTVCMDYI 49 (70)
T ss_dssp EEEBCHHHHTTCCSSCTTTCSSBCCCTTSC--------C---------------------------BTTTTEEEBCHHHH
T ss_pred cchhCHHHhcCCCCCCCCCCCCccCccccc--------c---------------------------cccCCcceeccccC
Confidence 34689999999999999 599999986411 0 01124567999999
Q ss_pred HHHHhcccCcccccCCCCCCccccccCC
Q 018223 169 EAVEKKQYGWFWVCPNGGKDCHYRHALP 196 (359)
Q Consensus 169 ~AvE~~kYGWfW~CPnGgd~C~yrH~LP 196 (359)
. ..|.+| +|+|.|..|
T Consensus 50 k----------G~C~r~--~C~y~H~~~ 65 (70)
T 3d2q_A 50 K----------GRCSRE--KCKYFHPPA 65 (70)
T ss_dssp T----------TCCCCT--TCCSBCCCH
T ss_pred c----------CCCCCC--CcCeeCCHH
Confidence 7 599998 899999866
No 7
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.85 E-value=5.5e-10 Score=91.85 Aligned_cols=63 Identities=24% Similarity=0.576 Sum_probs=50.2
Q ss_pred CCC-cchhhhhhhcccccCCC-CCccCccccccccchhhhcccccccchhhccchHHHHHHHHHhhcccccCCCCchhhh
Q 018223 87 VDP-KSILCEFYKAGQCQKGF-KCKFSHDLNVQRKGEKIDIYSDKRDKETMEDWDQETLEKVVESKNKEYQQNKPTDIVC 164 (359)
Q Consensus 87 ~dp-Ksv~C~fFk~G~C~kG~-kCkfSHd~~~~rk~eK~dlY~D~R~~dtmd~Wd~~kL~~Vv~~kh~~~~~~~~t~ivC 164 (359)
.+| +..+|.||.+|.|.+|+ .|+|||++.... . ......-.||
T Consensus 15 ~~~~k~~VCr~FlrG~C~rgd~~C~FsH~~~~~~--------~---------------------------~~~~~~~~vC 59 (98)
T 2e5s_A 15 LRTDKLEVCREFQRGNCARGETDCRFAHPADSTM--------I---------------------------DTSDNTVTVC 59 (98)
T ss_dssp CCSSEEEBCSHHHHTCCSSHHHHCSSBCCSSCCS--------C---------------------------CTTTCEEEBC
T ss_pred cChhhhhhhHHHhcCcCCCCCCCCCCcCCchhcc--------c---------------------------cccCCccccc
Confidence 455 56799999999999999 899999987521 0 0123567899
Q ss_pred hHHHHHHHhcccCcccccCCCCCCccccccCC
Q 018223 165 KYFLEAVEKKQYGWFWVCPNGGKDCHYRHALP 196 (359)
Q Consensus 165 K~Fl~AvE~~kYGWfW~CPnGgd~C~yrH~LP 196 (359)
++||. ..|.+| +|+|.|..|
T Consensus 60 ~~flk----------G~C~r~--~C~y~H~~~ 79 (98)
T 2e5s_A 60 MDYIK----------GRCMRE--KCKYFHPPA 79 (98)
T ss_dssp HHHHH----------TCCCCT--TCCSBCCCH
T ss_pred hhhcc----------CCCCCC--CcCccCChH
Confidence 99998 599998 899999876
No 8
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=98.55 E-value=1.5e-08 Score=81.07 Aligned_cols=59 Identities=25% Similarity=0.532 Sum_probs=47.5
Q ss_pred CcchhhhhhhcccccCCC-CCccCccccccccchhhhcccccccchhhccchHHHHHHHHHhhcccccCCCCchhhhhHH
Q 018223 89 PKSILCEFYKAGQCQKGF-KCKFSHDLNVQRKGEKIDIYSDKRDKETMEDWDQETLEKVVESKNKEYQQNKPTDIVCKYF 167 (359)
Q Consensus 89 pKsv~C~fFk~G~C~kG~-kCkfSHd~~~~rk~eK~dlY~D~R~~dtmd~Wd~~kL~~Vv~~kh~~~~~~~~t~ivCK~F 167 (359)
.+..+|.+|.+|.|..|+ .|+|||+++.-. ....+-+||.+|
T Consensus 7 ~~~~VCr~FlrG~C~r~d~~C~f~H~~~~~~-------------------------------------~~~~~~~vC~df 49 (83)
T 3d2n_A 7 LTLEVCREFQRGTCSRPDTECKFAHPSKSCQ-------------------------------------VENGRVIACFDS 49 (83)
T ss_dssp GEEEBCTTGGGTCCCSCTTTCSSBCCCTTCC-------------------------------------EETTEEECCHHH
T ss_pred ccchhcHHHhcCCCCCCCCCCCCcCCCcccc-------------------------------------ccCCceeehhHh
Confidence 345689999999999996 999999986310 002467899999
Q ss_pred HHHHHhcccCcccccCCCCCCccccccCC
Q 018223 168 LEAVEKKQYGWFWVCPNGGKDCHYRHALP 196 (359)
Q Consensus 168 l~AvE~~kYGWfW~CPnGgd~C~yrH~LP 196 (359)
|. ..|.+| +|+|.|.++
T Consensus 50 lk----------G~C~r~--~C~y~H~~~ 66 (83)
T 3d2n_A 50 LK----------GRCSRE--NCKYLHPPP 66 (83)
T ss_dssp HT----------TCCCCS--SCSSCCCCH
T ss_pred hh----------ccccCC--CcceeCChH
Confidence 97 599997 899999876
No 9
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=98.40 E-value=1.1e-07 Score=77.15 Aligned_cols=58 Identities=24% Similarity=0.533 Sum_probs=47.6
Q ss_pred cchhhhhhhcccccCCC-CCccCccccccccchhhhcccccccchhhccchHHHHHHHHHhhcccccCCCCchhhhhHHH
Q 018223 90 KSILCEFYKAGQCQKGF-KCKFSHDLNVQRKGEKIDIYSDKRDKETMEDWDQETLEKVVESKNKEYQQNKPTDIVCKYFL 168 (359)
Q Consensus 90 Ksv~C~fFk~G~C~kG~-kCkfSHd~~~~rk~eK~dlY~D~R~~dtmd~Wd~~kL~~Vv~~kh~~~~~~~~t~ivCK~Fl 168 (359)
+.-+|.+|.+|.|..|+ .|+|||+.+... |+ ..+-+||.+||
T Consensus 16 ~~~VCrdFlrG~C~r~d~~CrfsH~~~~~~-------------------v~------------------~~~~~vC~dfl 58 (89)
T 2rpp_A 16 TLEVCRQFQRGTCSRSDEECKFAHPPKSCQ-------------------VE------------------NGRVIACFDSL 58 (89)
T ss_dssp EECBCHHHHHTCCCCCTTTSSSBCCCSSSC-------------------CB------------------TTBEEBCHHHH
T ss_pred hhhhchHHhcCCCCCCCCCCCCcCCCcccc-------------------cc------------------CCceeeehhhh
Confidence 46689999999999998 999999987410 11 13578999999
Q ss_pred HHHHhcccCcccccCCCCCCccccccCC
Q 018223 169 EAVEKKQYGWFWVCPNGGKDCHYRHALP 196 (359)
Q Consensus 169 ~AvE~~kYGWfW~CPnGgd~C~yrH~LP 196 (359)
- ..|.++ +|+|.|.+|
T Consensus 59 k----------G~C~r~--~Cky~H~~~ 74 (89)
T 2rpp_A 59 K----------GRCSRE--NCKYLHPPT 74 (89)
T ss_dssp H----------TCCCCT--TCCSBCCCH
T ss_pred h----------CcCCCC--CcceecCHH
Confidence 8 599997 899999977
No 10
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=96.84 E-value=0.00037 Score=65.14 Aligned_cols=87 Identities=23% Similarity=0.403 Sum_probs=55.2
Q ss_pred hhhhhhhcccc----cCCCCCccCccccccccchhhhcccccccchhhccchHHHHHHHHHhhc------------cc--
Q 018223 92 ILCEFYKAGQC----QKGFKCKFSHDLNVQRKGEKIDIYSDKRDKETMEDWDQETLEKVVESKN------------KE-- 153 (359)
Q Consensus 92 v~C~fFk~G~C----~kG~kCkfSHd~~~~rk~eK~dlY~D~R~~dtmd~Wd~~kL~~Vv~~kh------------~~-- 153 (359)
=+|+||..|.| ..+..|+||||+....-..-+. .-.++.-+++-|.-.+.+.. |+
T Consensus 90 HLCK~~l~G~C~~~~~~~~~Ck~SHdi~s~~N~~vLk-------~h~l~~L~~~eL~~LLLQnDp~lLPeiC~~YkG~g~ 162 (229)
T 3u9g_A 90 HLCKLNLLGRCHYAQSQRNLCKYSHDVLSEQNFQILK-------NHELSGLNQEELACLLVQSDPFFLPEICKSYKGEGR 162 (229)
T ss_dssp CCCHHHHTTCCGGGTCCSSCCSSCSCTTCHHHHHHHH-------HTTCTTCCHHHHHHHHHTTCGGGSCCBCTTCCCSSS
T ss_pred eechhhhcCcCCcccCCCCCcccccccCchhHHHHHH-------HcCcccCCHhHhhheeccCCCccCchHHHHhCCCCC
Confidence 47999999999 3568899999997532111100 01345556677776666651 11
Q ss_pred --cc---CCCCchhhhhHHHHHHHhcccCcccccCCCCCCccccccCCC
Q 018223 154 --YQ---QNKPTDIVCKYFLEAVEKKQYGWFWVCPNGGKDCHYRHALPP 197 (359)
Q Consensus 154 --~~---~~~~t~ivCK~Fl~AvE~~kYGWfW~CPnGgd~C~yrH~LPp 197 (359)
.. ...+.--||.|||. ..|.. .+|+-.|-|-.
T Consensus 163 ~g~C~~~~~C~kLHIC~~Fl~----------G~C~f--~~CkRsH~~~~ 199 (229)
T 3u9g_A 163 KQTCGQPQPCERLHICEHFTR----------GNCSY--LNCLRSHNLMD 199 (229)
T ss_dssp CCSCSSSSCCCSBCSCHHHHT----------TCCCC--SSCSSCCCTTS
T ss_pred CCcCCCCCCCcceeccchhhc----------CCcCC--CCccCccCccC
Confidence 11 22334678888888 57877 37888888754
No 11
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=96.15 E-value=0.0015 Score=53.28 Aligned_cols=26 Identities=38% Similarity=0.864 Sum_probs=23.6
Q ss_pred chhhhhh-hcccccCCCCCccCccccc
Q 018223 91 SILCEFY-KAGQCQKGFKCKFSHDLNV 116 (359)
Q Consensus 91 sv~C~fF-k~G~C~kG~kCkfSHd~~~ 116 (359)
+++|.|| ..|.|..|..|+|+|+...
T Consensus 36 ~~~C~~f~~~G~C~~G~~C~f~H~~~~ 62 (98)
T 2cqe_A 36 DFPCKLYHTTGNCINGDDCMFSHDPLT 62 (98)
T ss_dssp SSBCSHHHHTSCCSSCTTCSSBCCCCC
T ss_pred CCcCcCcccCCcCCCCCCCcccCCCCc
Confidence 6889999 6999999999999999764
No 12
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.86 E-value=0.0037 Score=48.55 Aligned_cols=29 Identities=28% Similarity=0.698 Sum_probs=24.9
Q ss_pred CCchhhhhHHHHHHHhcccCcccccCCCCCCccccccCCC
Q 018223 158 KPTDIVCKYFLEAVEKKQYGWFWVCPNGGKDCHYRHALPP 197 (359)
Q Consensus 158 ~~t~ivCK~Fl~AvE~~kYGWfW~CPnGgd~C~yrH~LPp 197 (359)
....+||+|||. ..|.+| ++|.|.|.+.+
T Consensus 7 ~~k~~~C~~fl~----------G~C~~G-~~C~fsH~~~~ 35 (77)
T 2d9n_A 7 GEKTVVCKHWLR----------GLCKKG-DQCEFLHEYDM 35 (77)
T ss_dssp CCTTSBCHHHHT----------TCCSCT-TSSSSBCSCCT
T ss_pred CCcceeCHhHcc----------CcCCCC-CCCCCcccccc
Confidence 345789999997 589999 89999999875
No 13
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=95.49 E-value=0.0042 Score=47.46 Aligned_cols=26 Identities=31% Similarity=0.696 Sum_probs=23.6
Q ss_pred CcchhhhhhhcccccCCCCCccCcccc
Q 018223 89 PKSILCEFYKAGQCQKGFKCKFSHDLN 115 (359)
Q Consensus 89 pKsv~C~fFk~G~C~kG~kCkfSHd~~ 115 (359)
-+..+|.+|..|.|..| .|+|+|...
T Consensus 40 ~~~~vC~~flkG~C~r~-~C~y~H~~~ 65 (70)
T 3d2q_A 40 NTVTVCMDYIKGRCSRE-KCKYFHPPA 65 (70)
T ss_dssp TEEEBCHHHHTTCCCCT-TCCSBCCCH
T ss_pred CcceeccccCcCCCCCC-CcCeeCCHH
Confidence 46789999999999999 999999865
No 14
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=94.84 E-value=0.0048 Score=46.97 Aligned_cols=28 Identities=36% Similarity=0.778 Sum_probs=0.0
Q ss_pred CCcchhhh-hhhcccccCCCCCccCcccc
Q 018223 88 DPKSILCE-FYKAGQCQKGFKCKFSHDLN 115 (359)
Q Consensus 88 dpKsv~C~-fFk~G~C~kG~kCkfSHd~~ 115 (359)
..++.+|. |+..|.|..|.+|+|+|...
T Consensus 47 ~~k~~~C~~f~~~G~C~~G~~C~f~H~~~ 75 (77)
T 1m9o_A 47 KYKTELCHKFKLQGRCPYGSRCHFIHNPT 75 (77)
T ss_dssp -----------------------------
T ss_pred cccCCcccchhhCcCCCCcCcCCCCCCCC
Confidence 34678997 55699999999999999864
No 15
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=94.65 E-value=0.01 Score=45.76 Aligned_cols=26 Identities=35% Similarity=0.646 Sum_probs=23.4
Q ss_pred cchhhhhhhc-ccccCCCCCccCccccc
Q 018223 90 KSILCEFYKA-GQCQKGFKCKFSHDLNV 116 (359)
Q Consensus 90 Ksv~C~fFk~-G~C~kG~kCkfSHd~~~ 116 (359)
+..+|.||.. |.|.. +.|+|+|....
T Consensus 43 ~~~~C~~f~~~G~C~~-~~C~y~H~~p~ 69 (72)
T 2rhk_C 43 KMSECYFYSKFGECSN-KECPFLHIDPE 69 (72)
T ss_dssp SCCBCHHHHHHSCCSB-TTCCSBCCCCC
T ss_pred cCCcccccCCCCCCCC-CCeeccCCCcc
Confidence 5678999999 99999 99999999764
No 16
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.44 E-value=0.019 Score=44.70 Aligned_cols=27 Identities=33% Similarity=0.736 Sum_probs=24.7
Q ss_pred cchhhhhhhcccccCCCCCccCccccc
Q 018223 90 KSILCEFYKAGQCQKGFKCKFSHDLNV 116 (359)
Q Consensus 90 Ksv~C~fFk~G~C~kG~kCkfSHd~~~ 116 (359)
+.-||..|..|.|.-|++|.|.|...-
T Consensus 19 k~~LC~~~~~G~C~~G~~C~FAHG~~E 45 (69)
T 2d9m_A 19 YFSICDRYMNGTCPEGNSCKFAHGNAE 45 (69)
T ss_dssp CCSBCHHHHHSCCSSCSSCSSBSSHHH
T ss_pred CcccCcccCcCCCCCCCccCCcCCHHH
Confidence 678999999999999999999998754
No 17
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.25 E-value=0.015 Score=47.56 Aligned_cols=28 Identities=32% Similarity=0.664 Sum_probs=24.9
Q ss_pred CCcchhhhhhhcccccCCCCCccCccccc
Q 018223 88 DPKSILCEFYKAGQCQKGFKCKFSHDLNV 116 (359)
Q Consensus 88 dpKsv~C~fFk~G~C~kG~kCkfSHd~~~ 116 (359)
+.+..+|.||..|.|..| .|+|+|....
T Consensus 53 ~~~~~vC~~flkG~C~r~-~C~y~H~~~~ 80 (98)
T 2e5s_A 53 DNTVTVCMDYIKGRCMRE-KCKYFHPPAH 80 (98)
T ss_dssp TCEEEBCHHHHHTCCCCT-TCCSBCCCHH
T ss_pred CCccccchhhccCCCCCC-CcCccCChHH
Confidence 467889999999999999 9999998753
No 18
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=93.56 E-value=0.018 Score=53.59 Aligned_cols=27 Identities=30% Similarity=0.747 Sum_probs=23.7
Q ss_pred chhhhhHHHHHHHhcccCcccccCCCCCCccccccCCC
Q 018223 160 TDIVCKYFLEAVEKKQYGWFWVCPNGGKDCHYRHALPP 197 (359)
Q Consensus 160 t~ivCK~Fl~AvE~~kYGWfW~CPnGgd~C~yrH~LPp 197 (359)
...+|-||.- +.|+.| +.|.|+|-||.
T Consensus 69 ~~~~C~ffak----------G~C~~G-~~C~y~H~lPt 95 (240)
T 3u1l_A 69 QLFFCLFFAK----------GMCCLG-PKCEYLHHIPD 95 (240)
T ss_dssp CCSBCHHHHT----------TCCSCG-GGCSSBBSCCC
T ss_pred CCeEcCcccc----------CCCCCC-CCCCccCCCCC
Confidence 4679999965 699998 99999999995
No 19
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=92.91 E-value=0.029 Score=44.55 Aligned_cols=26 Identities=27% Similarity=0.558 Sum_probs=23.6
Q ss_pred cchhhhhhhcccccCCCCCccCccccc
Q 018223 90 KSILCEFYKAGQCQKGFKCKFSHDLNV 116 (359)
Q Consensus 90 Ksv~C~fFk~G~C~kG~kCkfSHd~~~ 116 (359)
+..+|.+|..|.|..| .|+|+|.+..
T Consensus 42 ~~~vC~dflkG~C~r~-~C~y~H~~~~ 67 (83)
T 3d2n_A 42 RVIACFDSLKGRCSRE-NCKYLHPPPH 67 (83)
T ss_dssp EEECCHHHHTTCCCCS-SCSSCCCCHH
T ss_pred ceeehhHhhhccccCC-CcceeCChHH
Confidence 4689999999999999 9999999864
No 20
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=92.35 E-value=0.039 Score=40.46 Aligned_cols=27 Identities=33% Similarity=0.834 Sum_probs=22.3
Q ss_pred CchhhhhHHHHHHHhcccCcccccCCCCCCccccccC
Q 018223 159 PTDIVCKYFLEAVEKKQYGWFWVCPNGGKDCHYRHAL 195 (359)
Q Consensus 159 ~t~ivCK~Fl~AvE~~kYGWfW~CPnGgd~C~yrH~L 195 (359)
.+.-||.-|-. || +|||| ..|.++|-+
T Consensus 18 ~~~~iC~~FSa------yG---wCp~G-~~Cp~SHDi 44 (50)
T 2fc6_A 18 HPTSICDNFSA------YG---WCPLG-PQCPQSHDI 44 (50)
T ss_dssp CCSCBCSHHHH------TC---CCTTG-GGCSSBCCC
T ss_pred cccchhhhccc------cc---cCCCC-CCCCccccC
Confidence 46678999965 88 49998 999999964
No 21
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=90.08 E-value=0.08 Score=49.28 Aligned_cols=27 Identities=30% Similarity=0.769 Sum_probs=24.3
Q ss_pred chhhhhhhcccccCCCCCccCcccccc
Q 018223 91 SILCEFYKAGQCQKGFKCKFSHDLNVQ 117 (359)
Q Consensus 91 sv~C~fFk~G~C~kG~kCkfSHd~~~~ 117 (359)
..+|.||--|.|..|..|.|.|.+...
T Consensus 70 ~~~C~ffakG~C~~G~~C~y~H~lPt~ 96 (240)
T 3u1l_A 70 LFFCLFFAKGMCCLGPKCEYLHHIPDE 96 (240)
T ss_dssp CSBCHHHHTTCCSCGGGCSSBBSCCCH
T ss_pred CeEcCccccCCCCCCCCCCccCCCCCc
Confidence 469999999999999999999998754
No 22
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=88.85 E-value=0.072 Score=42.40 Aligned_cols=27 Identities=41% Similarity=0.894 Sum_probs=20.7
Q ss_pred hhhhhHHHHHHHhcccCcccccCCCCCCccccccCCCccccch
Q 018223 161 DIVCKYFLEAVEKKQYGWFWVCPNGGKDCHYRHALPPGYVLKS 203 (359)
Q Consensus 161 ~ivCK~Fl~AvE~~kYGWfW~CPnGgd~C~yrH~LPpG~VlK~ 203 (359)
...|+|+. .|-| ..|.|+| |.|-||-+
T Consensus 52 ~~~Crf~~------------~C~n--~~C~F~H--p~g~~~~~ 78 (80)
T 2lhn_A 52 NEDCRFGV------------NCKN--IYCLFRH--PPGRVLPE 78 (80)
Confidence 45688775 5888 5899999 88888754
No 23
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=88.53 E-value=0.15 Score=37.48 Aligned_cols=28 Identities=29% Similarity=0.642 Sum_probs=23.6
Q ss_pred Ccchhhhhhh-cccccCCCCCccCccccc
Q 018223 89 PKSILCEFYK-AGQCQKGFKCKFSHDLNV 116 (359)
Q Consensus 89 pKsv~C~fFk-~G~C~kG~kCkfSHd~~~ 116 (359)
..+-+|.-|- .|.|..|..|.||||.++
T Consensus 18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiDl 46 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPLGPQCPQSHDISG 46 (50)
T ss_dssp CCSCBCSHHHHTCCCTTGGGCSSBCCCCC
T ss_pred cccchhhhccccccCCCCCCCCccccCCC
Confidence 3677887665 689999999999999876
No 24
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=87.89 E-value=0.15 Score=41.01 Aligned_cols=26 Identities=27% Similarity=0.576 Sum_probs=23.7
Q ss_pred cchhhhhhhcccccCCCCCccCccccc
Q 018223 90 KSILCEFYKAGQCQKGFKCKFSHDLNV 116 (359)
Q Consensus 90 Ksv~C~fFk~G~C~kG~kCkfSHd~~~ 116 (359)
...+|.+|..|.|..+ .|+|+|.+..
T Consensus 50 ~~~vC~dflkG~C~r~-~Cky~H~~~h 75 (89)
T 2rpp_A 50 RVIACFDSLKGRCSRE-NCKYLHPPTH 75 (89)
T ss_dssp BEEBCHHHHHTCCCCT-TCCSBCCCHH
T ss_pred ceeeehhhhhCcCCCC-CcceecCHHH
Confidence 5789999999999998 9999999864
No 25
>1lup_A GSMTX2; inhibitor cysteine knot, beta-sheet, toxin; NMR {Grammostola rosea} SCOP: g.3.6.2 PDB: 1v7f_A
Probab=84.67 E-value=0.42 Score=31.85 Aligned_cols=18 Identities=33% Similarity=1.165 Sum_probs=14.3
Q ss_pred CcccccCCCCCCccccccCCCcccc
Q 018223 177 GWFWVCPNGGKDCHYRHALPPGYVL 201 (359)
Q Consensus 177 GWfW~CPnGgd~C~yrH~LPpG~Vl 201 (359)
||||.|-.. ++| | +|||-
T Consensus 4 ~~f~~Cd~~-~kC----C--eg~vC 21 (31)
T 1lup_A 4 KWMWTCDEE-RKC----C--EGLVC 21 (31)
T ss_dssp SSSCBCCSS-CCC----C--SSSBC
T ss_pred cccccCCch-hhh----c--ccchH
Confidence 899999887 777 3 67764
No 26
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.56 E-value=0.52 Score=36.61 Aligned_cols=23 Identities=26% Similarity=0.931 Sum_probs=19.8
Q ss_pred hhhhHHHHHHHhcccCcccccCCCCCCccccccC
Q 018223 162 IVCKYFLEAVEKKQYGWFWVCPNGGKDCHYRHAL 195 (359)
Q Consensus 162 ivCK~Fl~AvE~~kYGWfW~CPnGgd~C~yrH~L 195 (359)
-+|++|+. ..||.| +.|.|-|-.
T Consensus 21 ~LC~~~~~----------G~C~~G-~~C~FAHG~ 43 (69)
T 2d9m_A 21 SICDRYMN----------GTCPEG-NSCKFAHGN 43 (69)
T ss_dssp SBCHHHHH----------SCCSSC-SSCSSBSSH
T ss_pred ccCcccCc----------CCCCCC-CccCCcCCH
Confidence 89999955 499998 999999963
No 27
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=68.32 E-value=2.8 Score=39.24 Aligned_cols=27 Identities=30% Similarity=0.710 Sum_probs=23.0
Q ss_pred cchhhhhhhcccccCCCCCccCcccccc
Q 018223 90 KSILCEFYKAGQCQKGFKCKFSHDLNVQ 117 (359)
Q Consensus 90 Ksv~C~fFk~G~C~kG~kCkfSHd~~~~ 117 (359)
+-=+|.+|.+|.|.- ..||-||++...
T Consensus 174 kLHIC~~Fl~G~C~f-~~CkRsH~~~~~ 200 (229)
T 3u9g_A 174 RLHICEHFTRGNCSY-LNCLRSHNLMDR 200 (229)
T ss_dssp SBCSCHHHHTTCCCC-SSCSSCCCTTSH
T ss_pred ceeccchhhcCCcCC-CCccCccCccCc
Confidence 345899999999998 799999999753
No 28
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=59.42 E-value=2.2 Score=39.70 Aligned_cols=30 Identities=27% Similarity=0.755 Sum_probs=0.4
Q ss_pred CCCCCCcchhhhhhhcccccCCCCCccCcccc
Q 018223 84 PVGVDPKSILCEFYKAGQCQKGFKCKFSHDLN 115 (359)
Q Consensus 84 ~~g~dpKsv~C~fFk~G~C~kG~kCkfSHd~~ 115 (359)
|.-.+++..+|-|-| .|+-|.+|||-|--.
T Consensus 185 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 214 (223)
T 3v33_A 185 PLTLEHRKQPCPYGR--KCTYGIKCRFFHPER 214 (223)
T ss_dssp C-------------------------------
T ss_pred CCCcccCCCCCCCCc--ccccCCcceecCCcc
Confidence 444577888999955 899999999999743
No 29
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=48.53 E-value=6.4 Score=38.13 Aligned_cols=19 Identities=26% Similarity=0.193 Sum_probs=14.8
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 018223 233 TPMTPELFTEWKKKKIAER 251 (359)
Q Consensus 233 TPVT~EsFl~WKkkk~~Ek 251 (359)
-.+|+|.|..|++-+..|.
T Consensus 260 A~~s~eey~~F~k~~~~e~ 278 (335)
T 4fp9_B 260 ACTSVEEFQVFKKLLAREE 278 (335)
T ss_dssp SCCCHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhhh
Confidence 3589999999988776554
No 30
>2h9x_A Toxin CGNA; beta sheet; HET: HYP; NMR {Condylactis gigantea}
Probab=35.54 E-value=16 Score=26.44 Aligned_cols=19 Identities=21% Similarity=0.579 Sum_probs=15.1
Q ss_pred CcccccCCCCCCccccccC
Q 018223 177 GWFWVCPNGGKDCHYRHAL 195 (359)
Q Consensus 177 GWfW~CPnGgd~C~yrH~L 195 (359)
-|||.||.|=.+|.-++.+
T Consensus 22 vw~~~C~sGW~kC~~~~~~ 40 (47)
T 2h9x_A 22 VWVGSCASGWHKCNDEYNI 40 (47)
T ss_dssp EESSSCCTTCBCSSSCCCS
T ss_pred EEecCCcchhhhhcccCcc
Confidence 3999999998899766543
No 31
>1sh1_A Neurotoxin I; NMR {Stichodactyla helianthus} SCOP: g.9.1.1 PDB: 2sh1_A 1shi_A
Probab=28.17 E-value=11 Score=27.43 Aligned_cols=18 Identities=17% Similarity=0.159 Sum_probs=14.7
Q ss_pred CcccccCCCCCCcccccc
Q 018223 177 GWFWVCPNGGKDCHYRHA 194 (359)
Q Consensus 177 GWfW~CPnGgd~C~yrH~ 194 (359)
-|||.||.|=.+|.-+|.
T Consensus 21 vw~~~CpsGW~kC~~~~~ 38 (48)
T 1sh1_A 21 VDLGSCNAGWEKCASYYT 38 (48)
T ss_dssp EEESSCCTTEEEEEEEEE
T ss_pred EeecCCcchhhhhcccCc
Confidence 399999999888876655
No 32
>1dj7_A Ferredoxin thioredoxin reductase: catalytic chain; 4Fe-4S cluster binding fold with CXCX16CXCX8CXC binding MOTI electron transport; 1.60A {Synechocystis SP} SCOP: g.36.1.1 PDB: 2pu9_A 2pvo_A 2puo_A 2puk_A 2pvg_A 2pvd_A
Probab=26.62 E-value=15 Score=31.11 Aligned_cols=11 Identities=27% Similarity=0.250 Sum_probs=7.6
Q ss_pred hhhcHHHHHHH
Q 018223 214 EKITIEEEIEN 224 (359)
Q Consensus 214 ~eisLEE~iE~ 224 (359)
.+||++++.+.
T Consensus 102 ~~i~~~~~~~~ 112 (117)
T 1dj7_A 102 QDIPMETLEEV 112 (117)
T ss_dssp SCCCHHHHHHH
T ss_pred ccccHHHHHHH
Confidence 35888887653
No 33
>4g7w_A Putative uncharacterized protein; beta barrel, TOLA binding domain, selenomethionine-substitut protein, phage coat, protein binding; 2.90A {Vibrio cholerae}
Probab=25.34 E-value=10 Score=32.31 Aligned_cols=19 Identities=47% Similarity=1.261 Sum_probs=15.9
Q ss_pred HHhcccCcccccC---CCCCCcc
Q 018223 171 VEKKQYGWFWVCP---NGGKDCH 190 (359)
Q Consensus 171 vE~~kYGWfW~CP---nGgd~C~ 190 (359)
||+.-||+-|.|- || |.|+
T Consensus 62 iekddygfvwsclsneng-dyck 83 (160)
T 4g7w_A 62 IEKDDYGFVWSCLSNENG-DYCK 83 (160)
T ss_dssp ECBCSSSBSEEEEECSSC-EEEE
T ss_pred eeccccceEEeeeccCCc-chhc
Confidence 7889999999995 44 8886
No 34
>1atx_A ATX IA; SEA anemone toxin; NMR {Anemonia sulcata} SCOP: g.9.1.1
Probab=24.13 E-value=18 Score=25.96 Aligned_cols=16 Identities=38% Similarity=1.005 Sum_probs=13.3
Q ss_pred CcccccCCCCCCcccc
Q 018223 177 GWFWVCPNGGKDCHYR 192 (359)
Q Consensus 177 GWfW~CPnGgd~C~yr 192 (359)
-|||.||.|=.+|.-+
T Consensus 22 vw~~~CpsGW~kC~~~ 37 (46)
T 1atx_A 22 IWVFGCPSGWNNCEGR 37 (46)
T ss_dssp EESSCCCTTCEEECCS
T ss_pred EEecCCcchhhhccCc
Confidence 3999999998888755
No 35
>4g7x_A Putative uncharacterized protein; membrane, protein binding-protein binding complex; 1.44A {Vibrio cholerae}
Probab=22.44 E-value=7.8 Score=31.17 Aligned_cols=19 Identities=47% Similarity=1.261 Sum_probs=16.1
Q ss_pred HHhcccCcccccC---CCCCCcc
Q 018223 171 VEKKQYGWFWVCP---NGGKDCH 190 (359)
Q Consensus 171 vE~~kYGWfW~CP---nGgd~C~ 190 (359)
||+.-||+-|.|- || +.|+
T Consensus 45 iekddygfvwsclsneng-dyck 66 (105)
T 4g7x_A 45 IEKDDYGFVWSCLSNENG-DYCK 66 (105)
T ss_dssp ECEETTEESEEEEEETTE-EEEE
T ss_pred eeccccceEEEeeccCCc-chhc
Confidence 6889999999995 55 8887
No 36
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=21.73 E-value=24 Score=32.60 Aligned_cols=10 Identities=40% Similarity=0.541 Sum_probs=0.0
Q ss_pred HHHHhhhhhc
Q 018223 340 ELEASLAKTS 349 (359)
Q Consensus 340 elEa~~~~~~ 349 (359)
++.+.++++.
T Consensus 376 ~~~~~~~~~~ 385 (386)
T 2ca6_A 376 ELADELSKAH 385 (386)
T ss_dssp ----------
T ss_pred HHHHHHhcCc
Confidence 3333344443
Done!