BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018224
(359 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BLW|A Chain A, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|C Chain C, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|E Chain E, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|G Chain G, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|I Chain I, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|K Chain K, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|M Chain M, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|O Chain O, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLX|A Chain A, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|C Chain C, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|E Chain E, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|G Chain G, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|I Chain I, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|K Chain K, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|M Chain M, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|O Chain O, Yeast Isocitrate Dehydrogenase (Apo Form)
Length = 349
Score = 284 bits (727), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 155/335 (46%), Positives = 212/335 (63%), Gaps = 6/335 (1%)
Query: 27 GSPRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEV-HGDMKRVPQQVLDSIRKNK 85
G VTLIPGDG+G +T++V + EA + PI +E + D K + ++S+++NK
Sbjct: 15 GGRFTVTLIPGDGVGKEITDSVRTIFEAENIPIDWETINIKQTDHKEGVYEAVESLKRNK 74
Query: 86 VCLKGGLKTPVG-GGVSSLNVQLRKELDLYAALVNCFNLPGLPTRHQNVDIVVIRENTEG 144
+ LKG TP G SLNV LRK+LD+YA + +L G+ TR ++D++VIRENTEG
Sbjct: 75 IGLKGLWHTPADQTGHGSLNVALRKQLDIYANVALFKSLKGVKTRIPDIDLIVIRENTEG 134
Query: 145 EYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLF 204
E+SGLEHE VPGVVESLKV+T+ +ERIA++AF++A RK VTAVHKANIMKL DGLF
Sbjct: 135 EFSGLEHESVPGVVESLKVMTRPKTERIARFAFDFAKKYNRKSVTAVHKANIMKLGDGLF 194
Query: 205 LESCREVATK-YPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAXXX 263
E+ K YP I + IIVDN MQ V+KP QFDV+VTP++YG ++ N A +
Sbjct: 195 RNIITEIGQKEYPDIDVSSIIVDNASMQAVAKPHQFDVLVTPSMYGTILGNIGAALIGGP 254
Query: 264 XXXXXXXXXADTAVFEQGASAGNVGNEKVVEQKKANPVALLLSSAMMLRHLQFPSFADRL 323
D AVFE G+ +VG + + Q ANP A++LSS +ML HL +A R+
Sbjct: 255 GLVAGANFGRDYAVFEPGSR--HVGLD-IKGQNVANPTAMILSSTLMLNHLGLNEYATRI 311
Query: 324 ETAVKRVISEEKYRTKDLGGGCTTQQIVDAVIANL 358
AV I+E K+ T+D+GG +T + +I L
Sbjct: 312 SKAVHETIAEGKHTTRDIGGSSSTTDFTNEIINKL 346
>pdb|3BLV|A Chain A, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|C Chain C, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|E Chain E, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|G Chain G, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
Length = 354
Score = 273 bits (697), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 152/335 (45%), Positives = 206/335 (61%), Gaps = 6/335 (1%)
Query: 27 GSPRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEV-HGDMKRVPQQVLDSIRKNK 85
G VTLIPGDG+G +T++V + EA + PI +E + D K + ++S+++NK
Sbjct: 15 GGRFTVTLIPGDGVGKEITDSVRTIFEAENIPIDWETINIKQTDHKEGVYEAVESLKRNK 74
Query: 86 VCLKGGLKTPVG-GGVSSLNVQLRKELDLYAALVNCFNLPGLPTRHQNVDIVVIRENTEG 144
+ LKG TP G SLNV LRK+LD+YA + +L G+ TR ++D++VIRENTEG
Sbjct: 75 IGLKGLWHTPADQTGHGSLNVALRKQLDIYANVALFKSLKGVKTRIPDIDLIVIRENTEG 134
Query: 145 EYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLF 204
E+SGLEHE VPGVVESLKV T+ +ERIA++AF++A RK VTAVHKANI KL DGLF
Sbjct: 135 EFSGLEHESVPGVVESLKVXTRPKTERIARFAFDFAKKYNRKSVTAVHKANIXKLGDGLF 194
Query: 205 LESCREVATK-YPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAXXX 263
E+ K YP I + IIVDN Q V+KP QFDV+VTP+ YG ++ N A +
Sbjct: 195 RNIITEIGQKEYPDIDVSSIIVDNASXQAVAKPHQFDVLVTPSXYGTILGNIGAALIGGP 254
Query: 264 XXXXXXXXXADTAVFEQGASAGNVGNEKVVEQKKANPVALLLSSAMMLRHLQFPSFADRL 323
D AVFE G+ +VG + + Q ANP A +LSS + L HL +A R+
Sbjct: 255 GLVAGANFGRDYAVFEPGSR--HVGLD-IKGQNVANPTAXILSSTLXLNHLGLNEYATRI 311
Query: 324 ETAVKRVISEEKYRTKDLGGGCTTQQIVDAVIANL 358
AV I+E K+ T+D+GG +T + +I L
Sbjct: 312 SKAVHETIAEGKHTTRDIGGSSSTTDFTNEIINKL 346
>pdb|3BLW|B Chain B, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|D Chain D, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|F Chain F, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|H Chain H, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|J Chain J, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|L Chain L, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|N Chain N, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|P Chain P, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLX|B Chain B, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|D Chain D, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|F Chain F, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|H Chain H, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|J Chain J, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|L Chain L, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|N Chain N, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|P Chain P, Yeast Isocitrate Dehydrogenase (Apo Form)
Length = 354
Score = 247 bits (630), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 142/348 (40%), Positives = 206/348 (59%), Gaps = 13/348 (3%)
Query: 19 TYMPRPGDGSPRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVH----GDMKRVP 74
T P P G V+ I GDGIGP ++ +V+++ A + PI +E +V + +P
Sbjct: 12 TGKPNPSTGK-YTVSFIEGDGIGPEISKSVKKIFSAANVPIEWESCDVSPIFVNGLTTIP 70
Query: 75 QQVLDSIRKNKVCLKGGLKTPVGGGVSSLNVQLRKELDLYAALVNCFNLPGLPTRHQNVD 134
+ SI KN V LKG L TP+G G SLN+ LRK L+A + ++ G T ++NVD
Sbjct: 71 DPAVQSITKNLVALKGPLATPIGKGHRSLNLTLRKTFGLFANVRPAKSIEGFKTTYENVD 130
Query: 135 IVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKA 194
+V+IRENTEGEYSG+EH V PGVV+S+K+IT+ SER+ +YAFEYA R +V VHK+
Sbjct: 131 LVLIRENTEGEYSGIEHIVCPGVVQSIKLITRDASERVIRYAFEYARAIGRPRVIVVHKS 190
Query: 195 NIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFD--VMVTPNLYGNLV 252
I +LADGLF+ +E++ +YP + ++DN +++V+ P + V V PNLYG+++
Sbjct: 191 TIQRLADGLFVNVAKELSKEYPDLTLETELIDNSVLKVVTNPSAYTDAVSVCPNLYGDIL 250
Query: 253 SNTAAGI-AXXXXXXXXXXXXADTAVFEQGASAGNVGNEKVVEQKKANPVALLLSSAMML 311
S+ +G+ A ++FE A G+ + + Q KANP ALLLSS MML
Sbjct: 251 SDLNSGLSAGSLGLTPSANIGHKISIFE--AVHGSAPD--IAGQDKANPTALLLSSVMML 306
Query: 312 RHLQFPSFADRLETAVKRVI-SEEKYRTKDLGGGCTTQQIVDAVIANL 358
H+ + AD+++ AV I S + RT DL G TT +AVI L
Sbjct: 307 NHMGLTNHADQIQNAVLSTIASGPENRTGDLAGTATTSSFTEAVIKRL 354
>pdb|2D1C|A Chain A, Crystal Structure Of Tt0538 Protein From Thermus
Thermophilus Hb8
pdb|2D1C|B Chain B, Crystal Structure Of Tt0538 Protein From Thermus
Thermophilus Hb8
Length = 496
Score = 230 bits (587), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 142/359 (39%), Positives = 206/359 (57%), Gaps = 18/359 (5%)
Query: 12 LIQTRSVTYMPRPGDGSPRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMK 71
LI T + M DG + +T+IPGDGIGP A +V+EA AP+ +E E +
Sbjct: 3 LITTETGKKMHVLEDGR-KLITVIPGDGIGPECVEATLKVLEAAKAPLAYEVREAGASVF 61
Query: 72 R------VPQQVLDSIRKNKVCLKGGLKTPVGGGVSSLNVQLRKELDLYAALVNCFNLPG 125
R VPQ+ ++SIRK +V LKG L+TPVG G S NV LRK + YA + P
Sbjct: 62 RRGIASGVPQETIESIRKTRVVLKGPLETPVGYGEKSANVTLRKLFETYANVRPVREFPN 121
Query: 126 LPTRH--QNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLN 183
+PT + + +D+VV+REN E Y+G+EH P V ++LK+I+ SE+I ++AFE A
Sbjct: 122 VPTPYAGRGIDLVVVRENVEDLYAGIEHMQTPSVAQTLKLISWKGSEKIVRFAFELARAE 181
Query: 184 YRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMV 243
RKKV K+NIMKLA+G + +VA +YP I+ IIVDN QLV +PEQF+V+V
Sbjct: 182 GRKKVHCATKSNIMKLAEGTLKRAFEQVAQEYPDIEAVHIIVDNAAHQLVKRPEQFEVIV 241
Query: 244 TPNLYGNLVSNTAAGIAXXXXXXXXXXXXADTAVFEQ-GASAGNVGNEKVVEQKKANPVA 302
T N+ G+++S+ +G+ + A+FE SA + V+ NP A
Sbjct: 242 TTNMNGDILSDLTSGLIGGLGFAPSANIGNEVAIFEAVHGSAPKYAGKNVI-----NPTA 296
Query: 303 LLLSSAMMLRHLQFPSFADRLETAVKRVISEEKYRTKDLGG---GCTTQQIVDAVIANL 358
+LLS+ MMLR+L+ + AD +E A+ + E + T D+ G G T + +A+I NL
Sbjct: 297 VLLSAVMMLRYLEEFATADLIENALLYTLEEGRVLTGDVVGYDRGAKTTEYTEAIIQNL 355
>pdb|3BLV|B Chain B, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|D Chain D, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|F Chain F, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|H Chain H, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
Length = 354
Score = 228 bits (582), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 140/348 (40%), Positives = 203/348 (58%), Gaps = 13/348 (3%)
Query: 19 TYMPRPGDGSPRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVH----GDMKRVP 74
T P P G V+ I GDGIGP ++ +V+++ A + PI +E +V + +P
Sbjct: 12 TGKPNPSTGK-YTVSFIEGDGIGPEISKSVKKIFSAANVPIEWESCDVSPIFVNGLTTIP 70
Query: 75 QQVLDSIRKNKVCLKGGLKTPVGGGVSSLNVQLRKELDLYAALVNCFNLPGLPTRHQNVD 134
+ SI KN V LKG L TP+G G SLN+ LRK L+A + ++ G T ++NVD
Sbjct: 71 DPAVQSITKNLVALKGPLATPIGKGHRSLNLTLRKTFGLFANVRPAKSIEGFKTTYENVD 130
Query: 135 IVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKA 194
+V+IRENTEGEYSG+EH V PGVV+S+K+IT+ SER+ +YAFEYA R +V VHK+
Sbjct: 131 LVLIRENTEGEYSGIEHIVCPGVVQSIKLITRDASERVIRYAFEYARAIGRPRVIVVHKS 190
Query: 195 NIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFD--VMVTPNLYGNLV 252
I +LADGLF+ +E++ +YP + ++DN +++V+ P + V V PNLYG+++
Sbjct: 191 TIQRLADGLFVNVAKELSKEYPDLTLETELIDNSVLKVVTNPSAYTDAVSVCPNLYGDIL 250
Query: 253 SNTAAGI-AXXXXXXXXXXXXADTAVFEQGASAGNVGNEKVVEQKKANPVALLLSSAMML 311
S+ +G+ A ++FE A G+ + + Q KANP ALLLSS L
Sbjct: 251 SDLNSGLSAGSLGLTPSANIGHKISIFE--AVHGSAPD--IAGQDKANPTALLLSSVXXL 306
Query: 312 RHLQFPSFADRLETAVKRVI-SEEKYRTKDLGGGCTTQQIVDAVIANL 358
H + AD+++ AV I S + RT DL G TT +AVI L
Sbjct: 307 NHXGLTNHADQIQNAVLSTIASGPENRTGDLAGTATTSSFTEAVIKRL 354
>pdb|1WPW|A Chain A, Crystal Structure Of Ipmdh From Sulfolobus Tokodaii
pdb|1WPW|B Chain B, Crystal Structure Of Ipmdh From Sulfolobus Tokodaii
Length = 336
Score = 200 bits (509), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 130/346 (37%), Positives = 187/346 (54%), Gaps = 33/346 (9%)
Query: 32 VTLIPGDGIGPLVTNAVEQVM----EAMHAPIYFEKYEVHGDM------KRVPQQVLDSI 81
V LI GDGIGP + + ++++ E PI + + E GD + +P+ L I
Sbjct: 4 VALIQGDGIGPEIVSKSKRILAKINELYSLPIEYIEVEA-GDRALARYGEALPKDSLKII 62
Query: 82 RKNKVCLKGGLKTPVGGGVSSLNVQLRKELDLYAALVNCFNLPGLPTRHQNVDIVVIREN 141
K + LKG PVG + + V+LR+ D+YA + ++PG+ T++ NVDI+++REN
Sbjct: 63 DKADIILKG----PVGESAADVVVKLRQIYDMYANIRPAKSIPGIDTKYGNVDILIVREN 118
Query: 142 TEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLAD 201
TE Y G EH V GV +K+IT+F SERIAK +A L RKKVT VHKAN+M++ D
Sbjct: 119 TEDLYKGFEHIVSDGVAVGMKIITRFASERIAKVGLNFA-LRRRKKVTCVHKANVMRITD 177
Query: 202 GLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAX 261
GLF E+CR V ++Y+E+ VD LV P+ FDV+VT N+YG+++S+ A+ IA
Sbjct: 178 GLFAEACRSVLKG--KVEYSEMYVDAAAANLVRNPQMFDVIVTENVYGDILSDEASQIAG 235
Query: 262 XXXXXXXXXXXADTAVFE--QGASAGNVGNEKVVEQKKANPVALLLSSAMMLRHLQFPSF 319
A+FE GA+ G + NP A LLS +MM + S
Sbjct: 236 SLGIAPSANIGDKKALFEPVHGAAFDIAG------KNIGNPTAFLLSVSMMYERMYELSN 289
Query: 320 ADR-------LETAVKRVISEEKYRTKDLGGGCTTQQIVDAVIANL 358
DR LE A+ V E K T D+GG TT +++ + L
Sbjct: 290 DDRYIKASRALENAIYLVYKERKALTPDVGGNATTDDLINEIYNKL 335
>pdb|3ASJ|A Chain A, Crystal Structure Of Homoisocitrate Dehydrogenase In
Complex With A Designed Inhibitor
pdb|3ASJ|B Chain B, Crystal Structure Of Homoisocitrate Dehydrogenase In
Complex With A Designed Inhibitor
pdb|3ASJ|C Chain C, Crystal Structure Of Homoisocitrate Dehydrogenase In
Complex With A Designed Inhibitor
pdb|3ASJ|D Chain D, Crystal Structure Of Homoisocitrate Dehydrogenase In
Complex With A Designed Inhibitor
Length = 334
Score = 189 bits (480), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 130/338 (38%), Positives = 182/338 (53%), Gaps = 22/338 (6%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAPIYF-------EKYEVHGDMKRVPQQVLDSIRKN 84
+ LI GDGIG V A +V+EA P+ F E +E G VP++ ++ I
Sbjct: 5 ICLIEGDGIGHEVIPAARRVLEATGLPLEFVEAEAGWETFERRG--TSVPEETVEKILSC 62
Query: 85 KVCLKGGLKTP---VGGGVSSLNVQLRKELDLYAALVNCFNLPGLPTRHQNVDIVVIREN 141
L G +P V G ++ LR+ LDLYA + + P +P VD+V++REN
Sbjct: 63 HATLFGAATSPTRKVPGFFGAIR-YLRRRLDLYANVRPAKSRP-VPGSRPGVDLVIVREN 120
Query: 142 TEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLAD 201
TEG Y E + V + VI+K SERI + A A RK + HKAN++ L
Sbjct: 121 TEGLYVEQERRYL-DVAIADAVISKKASERIGRAALRIAEGRPRKTLHIAHKANVLPLTQ 179
Query: 202 GLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAX 261
GLFL++ +EVA +P + +IIVDNC MQLV +PE+FDV+VT NL G+++S+ AAG+
Sbjct: 180 GLFLDTVKEVAKDFPLVNVQDIIVDNCAMQLVMRPERFDVIVTTNLLGDILSDLAAGLVG 239
Query: 262 XXXXXXXXXXXADTAVFEQ-GASAGNVGNEKVVEQKKANPVALLLSSAMMLRHLQFPSFA 320
TAVFE SA ++ + + ANP A +LS+AMML +L A
Sbjct: 240 GLGLAPSGNIGDTTAVFEPVHGSAPDIAGKGI-----ANPTAAILSAAMMLDYLGEKEAA 294
Query: 321 DRLETAVKRVISEEKYRTKDLGGGCTTQQIVDAVIANL 358
R+E AV V+ E RT DLGG TT+ +AV+ L
Sbjct: 295 KRVEKAVDLVL-ERGPRTPDLGGDATTEAFTEAVVEAL 331
>pdb|1X0L|A Chain A, Crystal Structure Of Tetrameric Homoisocitrate
Dehydrogenase From An Extreme Thermophile, Thermus
Thermophilus
pdb|1X0L|B Chain B, Crystal Structure Of Tetrameric Homoisocitrate
Dehydrogenase From An Extreme Thermophile, Thermus
Thermophilus
Length = 333
Score = 189 bits (480), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 130/338 (38%), Positives = 182/338 (53%), Gaps = 22/338 (6%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAPIYF-------EKYEVHGDMKRVPQQVLDSIRKN 84
+ LI GDGIG V A +V+EA P+ F E +E G VP++ ++ I
Sbjct: 4 ICLIEGDGIGHEVIPAARRVLEATGLPLEFVEAEAGWETFERRG--TSVPEETVEKILSC 61
Query: 85 KVCLKGGLKTP---VGGGVSSLNVQLRKELDLYAALVNCFNLPGLPTRHQNVDIVVIREN 141
L G +P V G ++ LR+ LDLYA + + P +P VD+V++REN
Sbjct: 62 HATLFGAATSPTRKVPGFFGAIR-YLRRRLDLYANVRPAKSRP-VPGSRPGVDLVIVREN 119
Query: 142 TEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLAD 201
TEG Y E + V + VI+K SERI + A A RK + HKAN++ L
Sbjct: 120 TEGLYVEQERRYL-DVAIADAVISKKASERIGRAALRIAEGRPRKTLHIAHKANVLPLTQ 178
Query: 202 GLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAX 261
GLFL++ +EVA +P + +IIVDNC MQLV +PE+FDV+VT NL G+++S+ AAG+
Sbjct: 179 GLFLDTVKEVAKDFPLVNVQDIIVDNCAMQLVMRPERFDVIVTTNLLGDILSDLAAGLVG 238
Query: 262 XXXXXXXXXXXADTAVFEQ-GASAGNVGNEKVVEQKKANPVALLLSSAMMLRHLQFPSFA 320
TAVFE SA ++ + + ANP A +LS+AMML +L A
Sbjct: 239 GLGLAPSGNIGDTTAVFEPVHGSAPDIAGKGI-----ANPTAAILSAAMMLDYLGEKEAA 293
Query: 321 DRLETAVKRVISEEKYRTKDLGGGCTTQQIVDAVIANL 358
R+E AV V+ E RT DLGG TT+ +AV+ L
Sbjct: 294 KRVEKAVDLVL-ERGPRTPDLGGDATTEAFTEAVVEAL 330
>pdb|3AH3|A Chain A, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
pdb|3AH3|B Chain B, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
pdb|3AH3|C Chain C, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
pdb|3AH3|D Chain D, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
Length = 334
Score = 179 bits (453), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 126/337 (37%), Positives = 176/337 (52%), Gaps = 20/337 (5%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAPIYF-------EKYEVHGDMKRVPQQVLDSIRKN 84
+ LI GDGIG V A +V+EA P+ F E +E G VP++ + I
Sbjct: 5 ICLIEGDGIGYEVIPAARRVLEATGLPLEFVEAEAGWETFERRG--TSVPEETVVKILSC 62
Query: 85 KVCLKGGLKTPVGG--GVSSLNVQLRKELDLYAALVNCFNLPGLPTRHQNVDIVVIRENT 142
L G P G + LR+ LDLYA + + P +P VD+V++RENT
Sbjct: 63 HATLFGAATIPTRKVPGFFGAIMALRRRLDLYANVRPAKSRP-VPGSRPGVDLVIVRENT 121
Query: 143 EGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADG 202
EG Y E + V + VI+K SERI + A A RK + HKAN++ L G
Sbjct: 122 EGLYVEQERRYL-DVAIADAVISKKASERIGRAALRIAEGRPRKTLHIAHKANVLPLTQG 180
Query: 203 LFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAXX 262
LFL++ +EVA +P + +IIVDNC QLV +PE++DV+VT NL G+++S+ AAG+
Sbjct: 181 LFLDTVKEVAKDFPLVNVQDIIVDNCATQLVMRPERYDVIVTTNLLGDILSDLAAGLMGG 240
Query: 263 XXXXXXXXXXADTAVFEQ-GASAGNVGNEKVVEQKKANPVALLLSSAMMLRHLQFPSFAD 321
TAVFE SA ++ + + ANP A +LS+AMML +L A
Sbjct: 241 LGLAPSGNIGDTTAVFEPVHGSAPDIAGKGI-----ANPTAAILSAAMMLDYLGEKEAAK 295
Query: 322 RLETAVKRVISEEKYRTKDLGGGCTTQQIVDAVIANL 358
R+E AV V+ E T DLGG TT+ +AV+ L
Sbjct: 296 RVEKAVDLVL-ERGPMTPDLGGDATTEAFTEAVVEAL 331
>pdb|3TY3|A Chain A, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe Bound To Glycyl-Glycyl-Glycine
pdb|3TY3|B Chain B, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe Bound To Glycyl-Glycyl-Glycine
pdb|3TY4|A Chain A, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe
pdb|3TY4|B Chain B, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe
Length = 366
Score = 157 bits (398), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 123/358 (34%), Positives = 185/358 (51%), Gaps = 41/358 (11%)
Query: 34 LIPGDGIGPLVTNAVEQVMEAMHAP--IYFEKYEVHGDM-------KRVPQQVLDSIRKN 84
LIP DGIG V A ++ME + A + F+ ++ K +P++ ++ ++
Sbjct: 15 LIPADGIGKEVVPAARRLMENLPAKHKLKFDFIDLDAGWGTFERTGKALPERTVERLKTE 74
Query: 85 -KVCLKGGLKTPVG--GGVSSLNVQLRKELDLYAALVNCFNLPGLPTRHQNVDIVVIREN 141
L G +++P G SS V LRK++ LYA + +L G + + VD+V++REN
Sbjct: 75 CNAALFGAVQSPTHKVAGYSSPIVALRKKMGLYANVRPVKSLDG--AKGKPVDLVIVREN 132
Query: 142 TEGEYSGLEHEV--VPG--VVESLKVITKFCSERIAKYAFEYA-----------YLNYRK 186
TE Y E V PG V E+++ I++ S +I K AFE A Y ++K
Sbjct: 133 TECLYVKEERMVQNTPGKRVAEAIRRISEEASTKIGKMAFEIAKSRQKIRESGTYSIHKK 192
Query: 187 K-VTAVHKANIMKLADGLFLESCREVAT---KYPSIKYNEIIVDNCCMQLVSKPEQFDVM 242
VT +HK+N+M + DGLF ESCR + Y SI +E IVD+ +L +PE FDV+
Sbjct: 193 PLVTIIHKSNVMSVTDGLFRESCRHAQSLDPSYASINVDEQIVDSMVYRLFREPECFDVV 252
Query: 243 VTPNLYGNLVSNTAAGIAXXXXXXXXXXXXADTAVFEQ--GASAGNVGNEKVVEQKKANP 300
V PNLYG+++S+ AA + D V + SA ++ + ANP
Sbjct: 253 VAPNLYGDILSDGAASL-IGSLGLVPSANVGDNFVMSEPVHGSAPDIAGRGI-----ANP 306
Query: 301 VALLLSSAMMLRHLQFPSFADRLETAVKRVISEEKYRTKDLGGGCTTQQIVDAVIANL 358
VA S A+ML + A + TAV +V++E K T DLGG T +I DAV+AN+
Sbjct: 307 VATFRSVALMLEFMGHQDAAADIYTAVDKVLTEGKVLTPDLGGKSGTNEITDAVLANI 364
>pdb|2DHT|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain7
pdb|2DHT|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain7
pdb|2E0C|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain7 At 2.0 A Resolution
pdb|2E0C|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain7 At 2.0 A Resolution
pdb|2E5M|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain 7
pdb|2E5M|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain 7
Length = 409
Score = 150 bits (380), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 111/388 (28%), Positives = 183/388 (47%), Gaps = 67/388 (17%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAPIY-----FEKYEVHGDMK-------RVPQQVLD 79
+ I GDGIGP +TNA +V+ Y + EV+ K R P++ +
Sbjct: 27 ILYIEGDGIGPEITNAAIKVINKAVERAYGSSREIKWLEVYAGEKAEKLVNDRFPKETQE 86
Query: 80 SIRKNKVCLKGGLKTPVGGGVSSLNVQLRKELDLYAALVNCFNLPGL--PTRH-QNVDIV 136
+ K +V LKG L+TP+G G S+NV +R LDLYA + + GL P +H + VD++
Sbjct: 87 MLLKYRVVLKGPLETPIGKGWKSVNVAIRLMLDLYANIRPVKYIEGLESPLKHPEKVDMI 146
Query: 137 VIRENTEGEYSGLEH--------------------EVVPGVVESLKVITKFCSERIAKYA 176
+ RENT+ Y G+E+ E+ +KV++K+ ++RI + A
Sbjct: 147 IFRENTDDLYRGIEYPFNSEEAKKIRDFLRKELKVEIEDDTGIGIKVMSKYKTQRITRLA 206
Query: 177 FEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATK------------------YPSI 218
+YA + RKKVT +HK N+MK +G F E EVA K I
Sbjct: 207 IQYAIEHKRKKVTIMHKGNVMKYTEGAFREWAYEVALKEYRDFIVTEEEINQGKPDQGKI 266
Query: 219 KYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAXXXXXXXXXXXXADTAVF 278
N+ I DN Q++ +PE++D+++ PN+ G+ +S+ A + + +F
Sbjct: 267 ILNDRIADNMFQQIIIRPEEYDIILAPNVNGDYISDAAGALIGNIGMLGGANIGDEGGMF 326
Query: 279 E--QGASAGNVGNEKVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEEKY 336
E G + G + ANP ++ + +MLR + + AD +E A+ I ++K
Sbjct: 327 EAIHGTAPKYAG------KNVANPTGIIKAGELMLRWMGWNEAADLIEKAINMAIRDKKV 380
Query: 337 RTKDLG-----GGCTTQQIVDAVIANLD 359
T+D+ T++ D +I +D
Sbjct: 381 -TQDIARFMGVKALGTKEYADELIKIMD 407
>pdb|2IV0|A Chain A, Thermal Stability Of Isocitrate Dehydrogenase From
Archaeoglobus Fulgidus Studied By Crystal Structure
Analysis And Engineering Of Chimers
pdb|2IV0|B Chain B, Thermal Stability Of Isocitrate Dehydrogenase From
Archaeoglobus Fulgidus Studied By Crystal Structure
Analysis And Engineering Of Chimers
Length = 412
Score = 148 bits (374), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 119/385 (30%), Positives = 186/385 (48%), Gaps = 73/385 (18%)
Query: 37 GDGIGPLVTNAVEQVMEAMHAPI-----YF------EKYEVHGDMKRVPQQVLDSIRKNK 85
GDGIG V A +V++A I +F + Y+++G+ +P L++I++ +
Sbjct: 35 GDGIGKDVVPAAIRVLDAAADKIGKEVVWFQVYAGEDAYKLYGNY--LPDDTLNAIKEFR 92
Query: 86 VCLKGGLKTPVGGGVSSLNVQLRKELDLYAALVNCFNLPGLPT--RH-QNVDIVVIRENT 142
V LKG L TPVGGG SLNV +R+ LDLYA + + L G+P+ +H + V+ V+ RENT
Sbjct: 93 VALKGPLTTPVGGGYRSLNVTIRQVLDLYANVRPVYYLKGVPSPIKHPEKVNFVIFRENT 152
Query: 143 EGEYSGLEHEVVPGVVESLKV----------------------ITKFCSERIAKYAFEYA 180
E Y+G+E G E+LK+ I++F ++R+ + A YA
Sbjct: 153 EDVYAGIEWP--RGSEEALKLIRFLKNEFGVTIREDSGIGIKPISEFATKRLVRMAIRYA 210
Query: 181 YLNYRKKVTAVHKANIMKLADGLFLESCREVAT-------------------KYPS--IK 219
N RK VT VHK NIMK +G F + EVA K P I
Sbjct: 211 IENNRKSVTLVHKGNIMKYTEGAFRDWGYEVAKQEFGEYCITEDELWDKYGGKQPEGKIV 270
Query: 220 YNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAXXXXXXXXXXXXADTAVFE 279
+ I DN Q++++ +++DV+ PNL G+ +S+ AA + VFE
Sbjct: 271 VKDRIADNMFQQILTRTDEYDVIALPNLNGDYLSDAAAALIGGLGIAPGSNIGDGIGVFE 330
Query: 280 --QGASAGNVGNEKVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEE--K 335
G++ K Q K NP A +L+ A+M ++ + ++ ++ AV+ IS
Sbjct: 331 PVHGSAP------KYAGQNKVNPTAEILTGALMFEYIGWKDASEMIKKAVEMTISSGIVT 384
Query: 336 YRTKDLGGGCT--TQQIVDAVIANL 358
Y GG T++ +AV+ NL
Sbjct: 385 YDIHRHMGGTKVGTREFAEAVVENL 409
>pdb|1ISO|A Chain A, Isocitrate Dehydrogenase: Structure Of An Engineered
Nadp+--> Nad+ Specificity-Reversal Mutant
Length = 416
Score = 143 bits (360), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 114/370 (30%), Positives = 176/370 (47%), Gaps = 65/370 (17%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAPIY--------FEKY------EVHGDMKRVPQQV 77
+ I GDGIG VT A+ +V++A Y E Y +V+G +P +
Sbjct: 29 IPYIEGDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWLPAET 88
Query: 78 LDSIRKNKVCLKGGLKTPVGGGVSSLNVQLRKELDLYAAL--VNCFNLPGLPTRHQNV-D 134
LD IR+ +V +KG L TPVGGG+ SLNV LR+ELDLY L V + P +H + D
Sbjct: 89 LDLIREYRVAIKGPLTTPVGGGIRSLNVALRQELDLYICLRPVRYYQGTPSPVKHPELTD 148
Query: 135 IVVIRENTEGEYSGLEHEVVPGVVE-----------------------SLKVITKFCSER 171
+V+ REN+E Y+G+E + E +K +++ ++R
Sbjct: 149 MVIFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPMSEEGTKR 208
Query: 172 IAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVA----------------TKY 215
+ + A EYA N R VT VHK NIMK +G F + ++A K
Sbjct: 209 LVRAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKN 268
Query: 216 PS----IKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAXXXXXXXXXXX 271
P+ I ++I D Q++ +P ++DV+ NL G+ +S+ A
Sbjct: 269 PNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANI 328
Query: 272 XADTAVFEQGASAGNVGNEKVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVI 331
+ A+FE A+ G + + Q KANP +++LS+ MMLRH+ + AD + ++ I
Sbjct: 329 GDEYALFE--ATHGTAPD--IAGQDKANPGSIILSAEMMLRHMGWTEAADLIVKGMEGAI 384
Query: 332 SEEKYRTKDL 341
+ K TKD
Sbjct: 385 N-AKTVTKDF 393
>pdb|1P8F|A Chain A, A Four Location Model To Explain The Stereospecificity Of
Proteins.
pdb|1PB1|A Chain A, A Four Location Model To Explain The Stereospecificity Of
Proteins.
pdb|1PB3|A Chain A, Sites Of Binding And Orientation In A Four Location Model
For Protein Stereospecificity.
pdb|1AI2|A Chain A, Isocitrate Dehydrogenase Complexed With Isocitrate, Nadp+,
And Calcium (flash-cooled)
pdb|1AI3|A Chain A, Orbital Steering In The Catalytic Power Of Enzymes: Small
Structural Changes With Large Catalytic Consequences
pdb|1IKA|A Chain A, Structure Of Isocitrate Dehydrogenase With
Alpha-Ketoglutarate At 2.7 Angstroms Resolution:
Conformational Changes Induced By Decarboxylation Of
Isocitrate
pdb|1SJS|A Chain A, Access To Phosphorylation In Isocitrate Dehydrogenase May
Occur By Domain Shifting
pdb|3ICD|A Chain A, Structure Of A Bacterial Enzyme Regulated By
Phosphorylation, Isocitrate Dehydrogenase
pdb|5ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
pdb|9ICD|A Chain A, Catalytic Mechanism Of Nadp+-Dependent Isocitrate
Dehydrogenase: Implications From The Structures Of
Magnesium-Isocitrate And Nadp+ Complexes
pdb|3LCB|C Chain C, The Crystal Structure Of Isocitrate Dehydrogenase
KinasePHOSPHATASE In Complex With Its Substrate,
Isocitrate Dehydrogenase, From Escherichia Coli.
pdb|3LCB|D Chain D, The Crystal Structure Of Isocitrate Dehydrogenase
KinasePHOSPHATASE In Complex With Its Substrate,
Isocitrate Dehydrogenase, From Escherichia Coli.
pdb|4AJ3|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase In
Complex With Isocitrate, Calcium(Ii) And Nadp - The
Pseudo-Michaelis Complex
pdb|4AJA|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase In
Complex With Isocitrate, Calcium(Ii) And Thionadp
Length = 416
Score = 142 bits (357), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 122/392 (31%), Positives = 184/392 (46%), Gaps = 69/392 (17%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAPIY--------FEKY------EVHGDMKRVPQQV 77
+ I GDGIG VT A+ +V++A Y E Y +V+G +P +
Sbjct: 29 IPYIEGDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWLPAET 88
Query: 78 LDSIRKNKVCLKGGLKTPVGGGVSSLNVQLRKELDLYAAL--VNCFNLPGLPTRHQNV-D 134
LD IR+ +V +KG L TPVGGG+ SLNV LR+ELDLY L V + P +H + D
Sbjct: 89 LDLIREYRVAIKGPLTTPVGGGIRSLNVALRQELDLYICLRPVRYYQGTPSPVKHPELTD 148
Query: 135 IVVIRENTEGEYSGLE--------HEVVPGVVESLKVI-----------TKFCSE----R 171
+V+ REN+E Y+G+E +V+ + E + V K CSE R
Sbjct: 149 MVIFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTKR 208
Query: 172 IAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVA----------------TKY 215
+ + A EYA N R VT VHK NIMK +G F + ++A K
Sbjct: 209 LVRAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKN 268
Query: 216 PS----IKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAXXXXXXXXXXX 271
P+ I ++I D Q++ +P ++DV+ NL G+ +S+ A
Sbjct: 269 PNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANI 328
Query: 272 XADTAVFEQGASAGNVGNEKVVEQKKANPVALLLSSAMMLRHLQFPSFAD----RLETAV 327
+ A+FE A+ G K Q K NP +++LS+ MMLRH+ + AD +E A+
Sbjct: 329 GDECALFE--ATHGTA--PKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAI 384
Query: 328 K-RVISEEKYRTKDLGGGCTTQQIVDAVIANL 358
+ ++ + R D + DA+I N+
Sbjct: 385 NAKTVTYDFERLMDGAKLLKCSEFGDAIIENM 416
>pdb|1BL5|A Chain A, Isocitrate Dehydrogenase From E. Coli Single Turnover Laue
Structure Of Rate-limited Product Complex, 10 Msec Time
Resolution
Length = 414
Score = 142 bits (357), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 122/392 (31%), Positives = 184/392 (46%), Gaps = 69/392 (17%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAPIY--------FEKY------EVHGDMKRVPQQV 77
+ I GDGIG VT A+ +V++A Y E Y +V+G +P +
Sbjct: 27 IPYIEGDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWLPAET 86
Query: 78 LDSIRKNKVCLKGGLKTPVGGGVSSLNVQLRKELDLYAAL--VNCFNLPGLPTRHQNV-D 134
LD IR+ +V +KG L TPVGGG+ SLNV LR+ELDLY L V + P +H + D
Sbjct: 87 LDLIREYRVAIKGPLTTPVGGGIRSLNVALRQELDLYICLRPVRYYQGTPSPVKHPELTD 146
Query: 135 IVVIRENTEGEYSGLE--------HEVVPGVVESLKVI-----------TKFCSE----R 171
+V+ REN+E Y+G+E +V+ + E + V K CSE R
Sbjct: 147 MVIFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTKR 206
Query: 172 IAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVA----------------TKY 215
+ + A EYA N R VT VHK NIMK +G F + ++A K
Sbjct: 207 LVRAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKN 266
Query: 216 PS----IKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAXXXXXXXXXXX 271
P+ I ++I D Q++ +P ++DV+ NL G+ +S+ A
Sbjct: 267 PNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANI 326
Query: 272 XADTAVFEQGASAGNVGNEKVVEQKKANPVALLLSSAMMLRHLQFPSFAD----RLETAV 327
+ A+FE A+ G K Q K NP +++LS+ MMLRH+ + AD +E A+
Sbjct: 327 GDECALFE--ATHGTA--PKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAI 382
Query: 328 K-RVISEEKYRTKDLGGGCTTQQIVDAVIANL 358
+ ++ + R D + DA+I N+
Sbjct: 383 NAKTVTYDFERLMDGAKLLKCSEFGDAIIENM 414
>pdb|2D4V|A Chain A, Crystal Structure Of Nad Dependent Isocitrate
Dehydrogenase From Acidithiobacillus Thiooxidans
pdb|2D4V|B Chain B, Crystal Structure Of Nad Dependent Isocitrate
Dehydrogenase From Acidithiobacillus Thiooxidans
pdb|2D4V|C Chain C, Crystal Structure Of Nad Dependent Isocitrate
Dehydrogenase From Acidithiobacillus Thiooxidans
pdb|2D4V|D Chain D, Crystal Structure Of Nad Dependent Isocitrate
Dehydrogenase From Acidithiobacillus Thiooxidans
Length = 429
Score = 141 bits (356), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 117/402 (29%), Positives = 182/402 (45%), Gaps = 94/402 (23%)
Query: 19 TYMPRPGDGSPRA-------------VTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYE 65
T++ +P GSP + I GDGIG VT A+ V++A A +Y + +
Sbjct: 3 THIQKPATGSPLTLLNGVLQVPDQPIIPFIEGDGIGCDVTPAMRSVVDAAVAKVYGGQRQ 62
Query: 66 V--------------HGDMKRVPQQVLDSIRKNKVCLKGGLKTPVGGGVSSLNVQLRKEL 111
+ +G+ + +P + + +IR+ KV +KG L+TPVGGG+ SLNV +R++L
Sbjct: 63 IAWMELFAGQKAVQLYGEGQYLPDETMAAIREYKVAIKGPLETPVGGGIRSLNVAMRQDL 122
Query: 112 DLYAAL--VNCFNLPGLPTRH-QNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVI---- 164
DLY L V F P RH + VD+V+ REN+E Y+G+E G E+ K+I
Sbjct: 123 DLYVCLRPVRYFEGTPSPMRHPEKVDMVIFRENSEDIYAGIEWPA--GSPEAEKIIRFLR 180
Query: 165 -----TKF----------------CSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGL 203
TK SER+ + +YA + + V+ VHK NIMK +G
Sbjct: 181 EEMGVTKIRFPDSSAIGIKPVSTEGSERLIRRTIQYALEHGKPSVSLVHKGNIMKFTEGG 240
Query: 204 FLE-----SCREVATKYPSIK----------------------------YNEIIVDNCCM 230
F + + RE A + + + ++I DN
Sbjct: 241 FRDWGYALAEREFAGRVFTWRQKAAISKAEGKAAGQKAEQQAIADGKLIIKDVIADNFLQ 300
Query: 231 QLVSKPEQFDVMVTPNLYGNLVSNTAAGIAXXXXXXXXXXXXADTAVFEQGASAGNVGNE 290
Q++ +PE + V+ T NL G+ VS+ A A+FE A+ G +
Sbjct: 301 QILLRPEDYSVVATLNLNGDYVSDALAAEVGGIGMAPGANLSDTHAIFE--ATHGTAPD- 357
Query: 291 KVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVIS 332
+ Q KANP +L+LS+ MML HL + A + A+ I+
Sbjct: 358 -IAGQGKANPSSLILSAVMMLEHLGWGEAAQAIVAAMNATIA 398
>pdb|1CW7|A Chain A, Low Temperature Structure Of Wild-Type Idh Complexed With
Mg- Isocitrate
Length = 416
Score = 141 bits (355), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 121/394 (30%), Positives = 184/394 (46%), Gaps = 73/394 (18%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAPIY--------FEKY------EVHGDMKRVPQQV 77
+ I GDGIG VT A+ +V++A Y E Y +V+G +P +
Sbjct: 29 IPYIEGDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWLPAET 88
Query: 78 LDSIRKNKVCLKGGLKTPVGGGVSSLNVQLRKELDLYAAL--VNCFNLPGLPTRHQNV-D 134
LD IR+ +V +KG L TPVGGG+ SLNV LR+ELDLY L V + P +H + D
Sbjct: 89 LDLIREYRVAIKGPLTTPVGGGIRSLNVALRQELDLYICLRPVRYYQGTPSPVKHPELTD 148
Query: 135 IVVIRENTEGEYSGLE--------HEVVPGVVESLKVI-----------TKFCSE----R 171
+V+ REN+E Y+G+E +V+ + E + V K CSE R
Sbjct: 149 MVIFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTKR 208
Query: 172 IAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVA----------------TKY 215
+ + A EYA N R VT VHK NIMK +G F + ++A K
Sbjct: 209 LVRAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKN 268
Query: 216 PS----IKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAXXXXXXXXXXX 271
P+ I ++I D Q++ +P ++DV+ NL G+ +S+ A
Sbjct: 269 PNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANI 328
Query: 272 XADTAVFE--QGASAGNVGNEKVVEQKKANPVALLLSSAMMLRHLQFPSFAD----RLET 325
+ A+FE G + G +KV NP +++LS+ MMLRH+ + AD +E
Sbjct: 329 GDECALFEATHGTAPAYAGQDKV------NPGSIILSAEMMLRHMGWTEAADLIVKGMEG 382
Query: 326 AVK-RVISEEKYRTKDLGGGCTTQQIVDAVIANL 358
A+ + ++ + R D + DA+I N+
Sbjct: 383 AINAKTVTYDFERLMDGAKLLKCSEFGDAIIENM 416
>pdb|1IDD|A Chain A, Isocitrate Dehydrogenase Y160f Mutant Apo Enzyme
pdb|1IDE|A Chain A, Isocitrate Dehydrogenase Y160f Mutant Steady-State
Intermediate Complex (Laue Determination)
Length = 416
Score = 140 bits (353), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 121/392 (30%), Positives = 184/392 (46%), Gaps = 69/392 (17%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAPIY--------FEKY------EVHGDMKRVPQQV 77
+ I GDGIG VT A+ +V++A Y E Y +V+G +P +
Sbjct: 29 IPYIEGDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWLPAET 88
Query: 78 LDSIRKNKVCLKGGLKTPVGGGVSSLNVQLRKELDLYAAL--VNCFNLPGLPTRHQNV-D 134
LD IR+ +V +KG L TPVGGG+ SLNV LR+ELDLY L V + P +H + D
Sbjct: 89 LDLIREYRVAIKGPLTTPVGGGIRSLNVALRQELDLYICLRPVRYYQGTPSPVKHPELTD 148
Query: 135 IVVIRENTEGEYSGLE--------HEVVPGVVESLKVI-----------TKFCSE----R 171
+V+ REN+E ++G+E +V+ + E + V K CSE R
Sbjct: 149 MVIFRENSEDIFAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTKR 208
Query: 172 IAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVA----------------TKY 215
+ + A EYA N R VT VHK NIMK +G F + ++A K
Sbjct: 209 LVRAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKN 268
Query: 216 PS----IKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAXXXXXXXXXXX 271
P+ I ++I D Q++ +P ++DV+ NL G+ +S+ A
Sbjct: 269 PNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANI 328
Query: 272 XADTAVFEQGASAGNVGNEKVVEQKKANPVALLLSSAMMLRHLQFPSFAD----RLETAV 327
+ A+FE A+ G K Q K NP +++LS+ MMLRH+ + AD +E A+
Sbjct: 329 GDECALFE--ATHGTA--PKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAI 384
Query: 328 K-RVISEEKYRTKDLGGGCTTQQIVDAVIANL 358
+ ++ + R D + DA+I N+
Sbjct: 385 NAKTVTYDFERLMDGAKLLKCSEFGDAIIENM 416
>pdb|6ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
Length = 416
Score = 140 bits (353), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 121/392 (30%), Positives = 183/392 (46%), Gaps = 69/392 (17%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAPIY--------FEKY------EVHGDMKRVPQQV 77
+ I GDGIG VT A+ +V++A Y E Y +V+G +P +
Sbjct: 29 IPYIEGDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWLPAET 88
Query: 78 LDSIRKNKVCLKGGLKTPVGGGVSSLNVQLRKELDLYAAL--VNCFNLPGLPTRHQNV-D 134
LD IR+ +V +KG L TPVGGG+ LNV LR+ELDLY L V + P +H + D
Sbjct: 89 LDLIREYRVAIKGPLTTPVGGGIRDLNVALRQELDLYICLRPVRYYQGTPSPVKHPELTD 148
Query: 135 IVVIRENTEGEYSGLE--------HEVVPGVVESLKVI-----------TKFCSE----R 171
+V+ REN+E Y+G+E +V+ + E + V K CSE R
Sbjct: 149 MVIFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTKR 208
Query: 172 IAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVA----------------TKY 215
+ + A EYA N R VT VHK NIMK +G F + ++A K
Sbjct: 209 LVRAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKN 268
Query: 216 PS----IKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAXXXXXXXXXXX 271
P+ I ++I D Q++ +P ++DV+ NL G+ +S+ A
Sbjct: 269 PNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANI 328
Query: 272 XADTAVFEQGASAGNVGNEKVVEQKKANPVALLLSSAMMLRHLQFPSFAD----RLETAV 327
+ A+FE A+ G K Q K NP +++LS+ MMLRH+ + AD +E A+
Sbjct: 329 GDECALFE--ATHGTA--PKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAI 384
Query: 328 K-RVISEEKYRTKDLGGGCTTQQIVDAVIANL 358
+ ++ + R D + DA+I N+
Sbjct: 385 NAKTVTYDFERLMDGAKLLKCSEFGDAIIENM 416
>pdb|4ICD|A Chain A, Regulation Of Isocitrate Dehydrogenase By Phosphorylation
Involves No Long-Range Conformational Change In The Free
Enzyme
Length = 416
Score = 140 bits (352), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 121/392 (30%), Positives = 183/392 (46%), Gaps = 69/392 (17%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAPIY--------FEKY------EVHGDMKRVPQQV 77
+ I GDGIG VT A+ +V++A Y E Y +V+G +P +
Sbjct: 29 IPYIEGDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWLPAET 88
Query: 78 LDSIRKNKVCLKGGLKTPVGGGVSSLNVQLRKELDLYAAL--VNCFNLPGLPTRHQNV-D 134
LD IR+ +V +KG L TPVGGG+ LNV LR+ELDLY L V + P +H + D
Sbjct: 89 LDLIREYRVAIKGPLTTPVGGGIRXLNVALRQELDLYICLRPVRYYQGTPSPVKHPELTD 148
Query: 135 IVVIRENTEGEYSGLE--------HEVVPGVVESLKVI-----------TKFCSE----R 171
+V+ REN+E Y+G+E +V+ + E + V K CSE R
Sbjct: 149 MVIFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTKR 208
Query: 172 IAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVA----------------TKY 215
+ + A EYA N R VT VHK NIMK +G F + ++A K
Sbjct: 209 LVRAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKN 268
Query: 216 PS----IKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAXXXXXXXXXXX 271
P+ I ++I D Q++ +P ++DV+ NL G+ +S+ A
Sbjct: 269 PNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANI 328
Query: 272 XADTAVFEQGASAGNVGNEKVVEQKKANPVALLLSSAMMLRHLQFPSFAD----RLETAV 327
+ A+FE A+ G K Q K NP +++LS+ MMLRH+ + AD +E A+
Sbjct: 329 GDECALFE--ATHGTA--PKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAI 384
Query: 328 K-RVISEEKYRTKDLGGGCTTQQIVDAVIANL 358
+ ++ + R D + DA+I N+
Sbjct: 385 NAKTVTYDFERLMDGAKLLKCSEFGDAIIENM 416
>pdb|1HJ6|A Chain A, Isocitrate Dehydrogenase S113e Mutant Complexed With
Isopropylmalate, Nadp+ And Magnesium (Flash-Cooled)
pdb|7ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
pdb|8ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
Length = 416
Score = 140 bits (352), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 121/392 (30%), Positives = 183/392 (46%), Gaps = 69/392 (17%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAPIY--------FEKY------EVHGDMKRVPQQV 77
+ I GDGIG VT A+ +V++A Y E Y +V+G +P +
Sbjct: 29 IPYIEGDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWLPAET 88
Query: 78 LDSIRKNKVCLKGGLKTPVGGGVSSLNVQLRKELDLYAAL--VNCFNLPGLPTRHQNV-D 134
LD IR+ +V +KG L TPVGGG+ LNV LR+ELDLY L V + P +H + D
Sbjct: 89 LDLIREYRVAIKGPLTTPVGGGIRELNVALRQELDLYICLRPVRYYQGTPSPVKHPELTD 148
Query: 135 IVVIRENTEGEYSGLE--------HEVVPGVVESLKVI-----------TKFCSE----R 171
+V+ REN+E Y+G+E +V+ + E + V K CSE R
Sbjct: 149 MVIFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTKR 208
Query: 172 IAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVA----------------TKY 215
+ + A EYA N R VT VHK NIMK +G F + ++A K
Sbjct: 209 LVRAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKN 268
Query: 216 PS----IKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAXXXXXXXXXXX 271
P+ I ++I D Q++ +P ++DV+ NL G+ +S+ A
Sbjct: 269 PNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANI 328
Query: 272 XADTAVFEQGASAGNVGNEKVVEQKKANPVALLLSSAMMLRHLQFPSFAD----RLETAV 327
+ A+FE A+ G K Q K NP +++LS+ MMLRH+ + AD +E A+
Sbjct: 329 GDECALFE--ATHGTA--PKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAI 384
Query: 328 K-RVISEEKYRTKDLGGGCTTQQIVDAVIANL 358
+ ++ + R D + DA+I N+
Sbjct: 385 NAKTVTYDFERLMDGAKLLKCSEFGDAIIENM 416
>pdb|1CW1|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase Mutant K230m
Bound To Isocitrate And Mn2+
pdb|1CW4|A Chain A, Crystal Structure Of K230m Isocitrate Dehydrogenase In
Complex With Alpha-Ketoglutarate
pdb|1IDC|A Chain A, Isocitrate Dehydrogenase From E.coli (mutant K230m),
Steady-state Intermediate Complex Determined By Laue
Crystallography
pdb|1IDF|A Chain A, Isocitrate Dehydrogenase K230m Mutant Apo Enzyme
Length = 416
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 121/392 (30%), Positives = 183/392 (46%), Gaps = 69/392 (17%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAPIY--------FEKY------EVHGDMKRVPQQV 77
+ I GDGIG VT A+ +V++A Y E Y +V+G +P +
Sbjct: 29 IPYIEGDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWLPAET 88
Query: 78 LDSIRKNKVCLKGGLKTPVGGGVSSLNVQLRKELDLYAAL--VNCFNLPGLPTRHQNV-D 134
LD IR+ +V +KG L TPVGGG+ SLNV LR+ELDLY L V + P +H + D
Sbjct: 89 LDLIREYRVAIKGPLTTPVGGGIRSLNVALRQELDLYICLRPVRYYQGTPSPVKHPELTD 148
Query: 135 IVVIRENTEGEYSGLE--------HEVVPGVVESLKVI-----------TKFCSE----R 171
+V+ REN+E Y+G+E +V+ + E + V K CSE R
Sbjct: 149 MVIFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTKR 208
Query: 172 IAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVA----------------TKY 215
+ + A EYA N R VT VH NIMK +G F + ++A K
Sbjct: 209 LVRAAIEYAIANDRDSVTLVHMGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKN 268
Query: 216 PS----IKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAXXXXXXXXXXX 271
P+ I ++I D Q++ +P ++DV+ NL G+ +S+ A
Sbjct: 269 PNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANI 328
Query: 272 XADTAVFEQGASAGNVGNEKVVEQKKANPVALLLSSAMMLRHLQFPSFAD----RLETAV 327
+ A+FE A+ G K Q K NP +++LS+ MMLRH+ + AD +E A+
Sbjct: 329 GDECALFE--ATHGTA--PKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAI 384
Query: 328 K-RVISEEKYRTKDLGGGCTTQQIVDAVIANL 358
+ ++ + R D + DA+I N+
Sbjct: 385 NAKTVTYDFERLMDGAKLLKCSEFGDAIIENM 416
>pdb|4AJB|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Isocitrate, Magnesium(Ii) And
Thionadp
pdb|4AJC|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Alpha-Ketoglutarate, Calcium(Ii)
And Adenine Nucleotide Phosphate
pdb|4AJR|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Alpha-Ketoglutarate,
Magnesium(Ii) And Nadph - The Product Complex
pdb|4AJS|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Isocitrate, Magnesium(Ii),
Adenosine 2',5'-Biphosphate And
Ribosylnicotinamide-5'-Phosphate
Length = 416
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 121/392 (30%), Positives = 183/392 (46%), Gaps = 69/392 (17%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAPIY--------FEKY------EVHGDMKRVPQQV 77
+ I GDGIG VT A+ +V++A Y E Y +V+G +P +
Sbjct: 29 IPYIEGDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWLPAET 88
Query: 78 LDSIRKNKVCLKGGLKTPVGGGVSSLNVQLRKELDLYAAL--VNCFNLPGLPTRHQNV-D 134
LD IR+ +V + G L TPVGGG+ SLNV LR+ELDLY L V + P +H + D
Sbjct: 89 LDLIREYRVAIMGPLTTPVGGGIRSLNVALRQELDLYICLRPVRYYQGTPSPVKHPELTD 148
Query: 135 IVVIRENTEGEYSGLE--------HEVVPGVVESLKVI-----------TKFCSE----R 171
+V+ REN+E Y+G+E +V+ + E + V K CSE R
Sbjct: 149 MVIFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTKR 208
Query: 172 IAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVA----------------TKY 215
+ + A EYA N R VT VHK NIMK +G F + ++A K
Sbjct: 209 LVRAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKN 268
Query: 216 PS----IKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAXXXXXXXXXXX 271
P+ I ++I D Q++ +P ++DV+ NL G+ +S+ A
Sbjct: 269 PNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANI 328
Query: 272 XADTAVFEQGASAGNVGNEKVVEQKKANPVALLLSSAMMLRHLQFPSFAD----RLETAV 327
+ A+FE A+ G K Q K NP +++LS+ MMLRH+ + AD +E A+
Sbjct: 329 GDECALFE--ATHGTA--PKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAI 384
Query: 328 K-RVISEEKYRTKDLGGGCTTQQIVDAVIANL 358
+ ++ + R D + DA+I N+
Sbjct: 385 NAKTVTYDFERLMDGAKLLKCSEFGDAIIENM 416
>pdb|1GRP|A Chain A, Regulatory And Catalytic Mechanisms In Escherichia Coli
Isocitrate Dehydrogenase: Multiple Roles For N115
Length = 416
Score = 138 bits (348), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 121/392 (30%), Positives = 183/392 (46%), Gaps = 69/392 (17%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAPIY--------FEKY------EVHGDMKRVPQQV 77
+ I GDGIG VT A+ +V++A Y E Y +V+G +P +
Sbjct: 29 IPYIEGDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWLPAET 88
Query: 78 LDSIRKNKVCLKGGLKTPVGGGVSSLNVQLRKELDLYAAL--VNCFNLPGLPTRHQNV-D 134
LD IR+ +V +KG L TPVGGG+ SL V LR+ELDLY L V + P +H + D
Sbjct: 89 LDLIREYRVAIKGPLTTPVGGGIRSLLVALRQELDLYICLRPVRYYQGTPSPVKHPELTD 148
Query: 135 IVVIRENTEGEYSGLE--------HEVVPGVVESLKVI-----------TKFCSE----R 171
+V+ REN+E Y+G+E +V+ + E + V K CSE R
Sbjct: 149 MVIFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPDHCGIGIKPCSEEGTKR 208
Query: 172 IAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVA----------------TKY 215
+ + A EYA N R VT VHK NIMK +G F + ++A K
Sbjct: 209 LVRAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKN 268
Query: 216 PS----IKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAXXXXXXXXXXX 271
P+ I ++I D Q++ +P ++DV+ NL G+ +S+ A
Sbjct: 269 PNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANI 328
Query: 272 XADTAVFEQGASAGNVGNEKVVEQKKANPVALLLSSAMMLRHLQFPSFAD----RLETAV 327
+ A+FE A+ G K Q K NP +++LS+ MMLRH+ + AD +E A+
Sbjct: 329 GDECALFE--ATHGTA--PKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAI 384
Query: 328 K-RVISEEKYRTKDLGGGCTTQQIVDAVIANL 358
+ ++ + R D + DA+I N+
Sbjct: 385 NAKTVTYDFERLMDGAKLLKCSEFGDAIIENM 416
>pdb|1HQS|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Bacillus Subtilis
pdb|1HQS|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Bacillus Subtilis
Length = 423
Score = 138 bits (348), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 116/408 (28%), Positives = 182/408 (44%), Gaps = 86/408 (21%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAPIY-----FEKYEVHGDMK-------RVPQQVLD 79
+ I GDG GP + NA +V+EA Y EV+ K +P + LD
Sbjct: 22 IPFIEGDGTGPDIWNAASKVLEAAVEKAYKGEKKITWKEVYAGEKAYNKTGEWLPAETLD 81
Query: 80 SIRKNKVCLKGGLKTPVGGGVSSLNVQLRKELDLYAALVNCFNLPGLPT---RHQNVDIV 136
IR+ + +KG L TPVGGG+ SLNV LR+ELDL+ L G+P+ R ++ D+V
Sbjct: 82 VIREYFIAIKGPLTTPVGGGIRSLNVALRQELDLFVXLRPVRYFTGVPSPVKRPEDTDMV 141
Query: 137 VIRENTEGEYSGLEH----EVVPGVVESL-------------------KVITKFCSERIA 173
+ RENTE Y+G+E+ E V ++ L K +++ + R+
Sbjct: 142 IFRENTEDIYAGIEYAKGSEEVQKLISFLQNELNVNKIRFPETSGIGIKPVSEEGTSRLV 201
Query: 174 KYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATK------YPSIKYNEI---- 223
+ A +YA + RK VT VHK NIMK +G F E+A K + +Y+ I
Sbjct: 202 RAAIDYAIEHGRKSVTLVHKGNIMKFTEGAFKNWGYELAEKEYGDKVFTWAQYDRIAEEQ 261
Query: 224 -----------------------IVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIA 260
I D Q++++P +FDV+ T NL G+ +S+ A
Sbjct: 262 GKDAANKAQSEAEAAGKIIIKDSIADIFLQQILTRPNEFDVVATMNLNGDYISDALAAQV 321
Query: 261 XXXXXXXXXXXXADT--AVFE--QGASAGNVGNEKVVEQKKANPVALLLSSAMMLRHLQF 316
+T A+FE G + G +KV NP +++LS ++L HL +
Sbjct: 322 GGIGIAPGANINYETGHAIFEATHGTAPKYAGLDKV------NPSSVILSGVLLLEHLGW 375
Query: 317 PSFADRL-----ETAVKRVISEEKYRTKDLGGGCTTQQIVDAVIANLD 359
AD + +T +V++ + R D + + +I N+D
Sbjct: 376 NEAADLVIKSMEKTIASKVVTYDFARLMDGATEVKCSEFGEELIKNMD 423
>pdb|3DMS|A Chain A, 1.65a Crystal Structure Of Isocitrate Dehydrogenase From
Burkholderia Pseudomallei
Length = 427
Score = 137 bits (345), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 108/366 (29%), Positives = 175/366 (47%), Gaps = 68/366 (18%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVH--------------GDMKRVPQQV 77
+ I GDG G +T + +V++A Y K ++H G +P++
Sbjct: 39 IPYIEGDGTGFDITPVMIKVVDAAVEKAYGGKKKIHWMEIYAGEKATKVYGPDVWLPEET 98
Query: 78 LDSIRKNKVCLKGGLKTPVGGGVSSLNVQLRKELDLYAALVNCFNLPGLPT---RHQNVD 134
L +++ V +KG L TPVGGG+ SLNV LR+ELDLY L G+P+ + +
Sbjct: 99 LQVLKEYVVSIKGPLTTPVGGGIRSLNVALRQELDLYVCLRPIQYFKGVPSPVREPEKTN 158
Query: 135 IVVIRENTEGEYSGLEH--------EVVPGVVESLKV---------------ITKFCSER 171
+V+ REN+E Y+G+E +V+ + E + V ++K +ER
Sbjct: 159 MVIFRENSEDIYAGIEWAAESEQAKKVIKFLQEEMGVKKIRFPQTSGIGIKPVSKEGTER 218
Query: 172 IAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKY---------PSIKY-- 220
+ + A +YA N RK VT VHK NIMK +G F ++ +A K P +K+
Sbjct: 219 LVRKAIQYAIDNDRKSVTLVHKGNIMKFTEGAFRDAGYALAQKEFGAELIDGGPWMKFKN 278
Query: 221 ----NEIIV-----DNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAXXXXXXXXXXX 271
NEI+V D Q++ +P ++DV+ T NL G+ +S+ A
Sbjct: 279 PKTGNEIVVKDSIADAFLQQILLRPAEYDVIATLNLNGDYISDALAAQVGGIGIAPGANL 338
Query: 272 XADTAVFE--QGASAGNVGNEKVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKR 329
A+FE G + G + V NP + +LS+ MMLRHL + AD + +A+++
Sbjct: 339 SDSVAMFEATHGTAPKYAGKDYV------NPGSEILSAEMMLRHLGWTEAADVIISAMEK 392
Query: 330 VISEEK 335
I +++
Sbjct: 393 SIKQKR 398
>pdb|1GRO|A Chain A, Regulatory And Catalytic Mechanisms In Escherichia Coli
Isocitrate Dehydrogenase: Multiple Roles For N115
Length = 416
Score = 136 bits (343), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 120/392 (30%), Positives = 182/392 (46%), Gaps = 69/392 (17%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAPIY--------FEKY------EVHGDMKRVPQQV 77
+ I GDGIG VT A+ +V++A Y E Y +V+G +P +
Sbjct: 29 IPYIEGDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWLPAET 88
Query: 78 LDSIRKNKVCLKGGLKTPVGGGVSSLNVQLRKELDLYAAL--VNCFNLPGLPTRHQNV-D 134
LD IR+ +V +KG L TPVGGG+ L V LR+ELDLY L V + P +H + D
Sbjct: 89 LDLIREYRVAIKGPLTTPVGGGIRELLVALRQELDLYICLRPVRYYQGTPSPVKHPELTD 148
Query: 135 IVVIRENTEGEYSGLE--------HEVVPGVVESLKVI-----------TKFCSE----R 171
+V+ REN+E Y+G+E +V+ + E + V K CSE R
Sbjct: 149 MVIFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPDHCGIGIKPCSEEGTKR 208
Query: 172 IAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVA----------------TKY 215
+ + A EYA N R VT VHK NIMK +G F + ++A K
Sbjct: 209 LVRAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKN 268
Query: 216 PS----IKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAXXXXXXXXXXX 271
P+ I ++I D Q++ +P ++DV+ NL G+ +S+ A
Sbjct: 269 PNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANI 328
Query: 272 XADTAVFEQGASAGNVGNEKVVEQKKANPVALLLSSAMMLRHLQFPSFAD----RLETAV 327
+ A+FE A+ G K Q K NP +++LS+ MMLRH+ + AD +E A+
Sbjct: 329 GDECALFE--ATHGTA--PKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAI 384
Query: 328 K-RVISEEKYRTKDLGGGCTTQQIVDAVIANL 358
+ ++ + R D + DA+I N+
Sbjct: 385 NAKTVTYDFERLMDGAKLLKCSEFGDAIIENM 416
>pdb|3U1H|A Chain A, Crystal Structure Of Ipmdh From The Last Common Ancestor
Of Bacillus
pdb|3U1H|B Chain B, Crystal Structure Of Ipmdh From The Last Common Ancestor
Of Bacillus
Length = 390
Score = 134 bits (336), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 117/365 (32%), Positives = 188/365 (51%), Gaps = 52/365 (14%)
Query: 30 RAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDM----------KRVPQQVLD 79
+ + ++PGDGIGP V A +V++A+ A + ++E + +P++ LD
Sbjct: 24 KKIAVLPGDGIGPEVMEAAIEVLKAV-AERFGHEFEFEYGLIGGAAIDEAGTPLPEETLD 82
Query: 80 SIRKNKVCLKGGLKTPVGGGVSSLN----------VQLRKELDLYAAL--VNCFN--LPG 125
R + L G VGG N + +RK LDL+A L V ++
Sbjct: 83 VCRGSDAILLGA----VGGPKWDQNPSELRPEKGLLGIRKGLDLFANLRPVKVYDSLADA 138
Query: 126 LPTRHQ---NVDIVVIRENTEGEYSGLEHEVVP----GVVESLKVITKFCSERIAKYAFE 178
P + + VD+V++RE T G Y G E V++L + T+ ERI + AFE
Sbjct: 139 SPLKKEVIEGVDLVIVRELTGGLYFGEPSERYEEGEEAAVDTL-LYTREEIERIIRKAFE 197
Query: 179 YAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQ 238
A L +KKVT+V KAN+++ + L+ E EVA +YP ++ ++VDN MQL+ P Q
Sbjct: 198 LA-LTRKKKVTSVDKANVLE-SSRLWREVAEEVAKEYPDVELEHMLVDNAAMQLIRNPRQ 255
Query: 239 FDVMVTPNLYGNLVSNTAAGIAXXXXXXXXXXXXAD-TAVFEQ-GASAGNVGNEKVVEQK 296
FDV+VT N++G+++S+ A+ I D ++E SA ++ + +
Sbjct: 256 FDVIVTENMFGDILSDEASMITGSLGMLPSASLSTDGLGLYEPVHGSAPDIAGKGI---- 311
Query: 297 KANPVALLLSSAMMLRH-LQFPSFADRLETAVKRVISEEKYRTKDLG--GG--CTTQQIV 351
ANP+A +LS+AMMLR+ A +E AV++V++ E YRT D+ GG +T ++
Sbjct: 312 -ANPLATILSAAMMLRYSFGLEEEAKAIEKAVEKVLA-EGYRTADIAKPGGKYVSTTEMT 369
Query: 352 DAVIA 356
D V A
Sbjct: 370 DEVKA 374
>pdb|1V94|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Aeropyrum Pernix
pdb|1V94|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Aeropyrum Pernix
pdb|1TYO|A Chain A, Isocitrate Dehydrogenase From The Hyperthermophile
Aeropyrum Pernix In Complex With Etheno-Nadp
pdb|1TYO|B Chain B, Isocitrate Dehydrogenase From The Hyperthermophile
Aeropyrum Pernix In Complex With Etheno-Nadp
pdb|1XGV|A Chain A, Isocitrate Dehydrogenase From The Hyperthermophile
Aeropyrum Pernix
pdb|1XGV|B Chain B, Isocitrate Dehydrogenase From The Hyperthermophile
Aeropyrum Pernix
pdb|1XKD|A Chain A, Ternary Complex Of Isocitrate Dehydrogenase From The
Hyperthermophile Aeropyrum Pernix
pdb|1XKD|B Chain B, Ternary Complex Of Isocitrate Dehydrogenase From The
Hyperthermophile Aeropyrum Pernix
Length = 435
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 105/368 (28%), Positives = 169/368 (45%), Gaps = 65/368 (17%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEV------HGDMKR------VPQQVLD 79
V I GDG+GP V + +V++A +Y + G + R +P+ L+
Sbjct: 38 VAFIRGDGVGPEVVESALKVVDAAVKKVYGGSRRIVWWELLAGHLAREKCGELLPKATLE 97
Query: 80 SIRKNKVCLKGGLKTPVGGGVSSLNVQLRKELDLYAAL--VNCFNLPGLPTRHQNVDIVV 137
IR +V LKG L+TPVG G SLNV +R+ LDLYA + V + P VD+V+
Sbjct: 98 GIRLARVALKGPLETPVGTGYRSLNVAIRQALDLYANIRPVRYYGQPAPHKYADRVDMVI 157
Query: 138 IRENTEGEYSGLE----------------HEVVPGVVE----SLKVITKFCSERIAKYAF 177
RENTE Y+G+E E + E +K I++F + R+ + A
Sbjct: 158 FRENTEDVYAGIEWPHDSPEAARIRRFLAEEFGISIREDAGIGVKPISRFATRRLMERAL 217
Query: 178 EYAYLNYRKKVTAVHKANIMKLADGLFLESCREVA---------------TKYPSIK--- 219
E+A N VT +HK NIMK +G F+ EVA KY ++
Sbjct: 218 EWALRNGNTVVTIMHKGNIMKYTEGAFMRWAYEVALEKFREHVVTEQEVQEKYGGVRPEG 277
Query: 220 ---YNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAXXXXXXXXXXXXADTA 276
N+ I DN Q++++P + V+V PNL G+ +S+ A+ + A
Sbjct: 278 KILVNDRIADNMLQQIITRPWDYQVIVAPNLNGDYISDAASALVGGIGMAAGMNMGDGIA 337
Query: 277 VFE--QGASAGNVGNEKVVEQKKANPVALLLSSAMML-RHLQFPSFADRLETAVKRVISE 333
V E G + G + + NP A +LS+++++ + + +E A+++ +
Sbjct: 338 VAEPVHGTAPKYAGKDLI------NPSAEILSASLLIGEFMGWREVKSIVEYAIRKAVQS 391
Query: 334 EKYRTKDL 341
+K T+DL
Sbjct: 392 KKV-TQDL 398
>pdb|1VLC|A Chain A, Crystal Structure Of 3-isopropylmalate Dehydrogenase
(tm0556) From Thermotoga Maritima At 1.90 A Resolution
Length = 366
Score = 127 bits (320), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 117/364 (32%), Positives = 180/364 (49%), Gaps = 51/364 (14%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAPI--YFEKYEVH--GD-MKRVPQQVLDSIRKNKV 86
+ ++PGDGIGP V +V+E + FEK H GD + R + + + +K +
Sbjct: 15 IAVLPGDGIGPEVVREALKVLEVVEKKTGKTFEKVFGHIGGDAIDRFGEPLPEETKK--I 72
Query: 87 CLK---------GGLKT--------PVGGGVSSLNVQLRKELDLYAALVNCFNLPGL--- 126
CL+ GG K P GG+ + LRK L+LYA + L
Sbjct: 73 CLEADAIFLGSVGGPKWDDLPPEKRPEIGGL----LALRKMLNLYANIRPIKVYRSLVHV 128
Query: 127 -PTRHQ----NVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAY 181
P + + VD+V +RE + G Y G + + + ERIA+ AFE A
Sbjct: 129 SPLKEKVIGSGVDLVTVRELSYGVYYGQPRGLDEEKGFDTMIYDRKTVERIARTAFEIAK 188
Query: 182 LNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDV 241
N RKKVT+V KAN++ + L+ + EVA +YP ++ I VDN MQL+ KP QFDV
Sbjct: 189 -NRRKKVTSVDKANVL-YSSMLWRKVVNEVAREYPDVELTHIYVDNAAMQLILKPSQFDV 246
Query: 242 MVTPNLYGNLVSNTAAGIAXXXXXXXXXXXXADTAVFE-QGASAGNVGNEKVVEQKKANP 300
++T N++G+++S+ +A + D ++E G SA ++ + + ANP
Sbjct: 247 ILTTNMFGDILSDESAALP-GSLGLLPSASFGDKNLYEPAGGSAPDIAGKNI-----ANP 300
Query: 301 VALLLSSAMMLRH-LQFPSFADRLETAVKRVISEEKYRTKDLG----GGCTTQQIVDAVI 355
+A +LS AMML H A ++E AV+ VI EE YRT+D+ +T Q+ D +
Sbjct: 301 IAQILSLAMMLEHSFGMVEEARKIERAVELVI-EEGYRTRDIAEDPEKAVSTSQMGDLIC 359
Query: 356 ANLD 359
L+
Sbjct: 360 KKLE 363
>pdb|3FMX|X Chain X, Crystal Structure Of Tartrate Dehydrogenase From
Pseudomonas Putida Complexed With Nadh
Length = 364
Score = 127 bits (319), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 110/369 (29%), Positives = 180/369 (48%), Gaps = 53/369 (14%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAM---HA-PIYFEKYEV--------HGDMKRVPQQVLD 79
+ IPGDGIG V +V+EA H + F+ +E HG M +P +
Sbjct: 8 IAAIPGDGIGLEVLPEGIRVLEAAALKHGLALEFDTFEWASCDYYLQHGKM--MPDDWAE 65
Query: 80 SIRKNKVCLKGGLKTP--VGGGVSSLN--VQLRKELDLYAALVNCFNLPGLPTRHQN--- 132
+++ G + P V +S ++ R+E D Y + PG+P N
Sbjct: 66 QLKQYDAIYFGAVGWPDKVPDHISLWGSLLKFRREFDQYVNIRPVRLFPGVPCALANRKV 125
Query: 133 --VDIVVIRENTEGEYSGL--------EHEVVPGVVESLKVITKFCSERIAKYAFEYAYL 182
+D VV+RENTEGEYS L E+E+V + ES + T+ +RI KYAF+ A
Sbjct: 126 GDIDFVVVRENTEGEYSSLGGIMFENTENEIV--IQES--IFTRRGVDRILKYAFDLAEK 181
Query: 183 NYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVM 242
RK VT+ K+N M ++ + + +A YP + +++ +D C + V +PE+FDV+
Sbjct: 182 RERKHVTSATKSNGMAISMPYWDKRTEAMAAHYPHVSWDKQHIDILCARFVLQPERFDVV 241
Query: 243 VTPNLYGNLVSN---TAAGIAXXXXXXXXXXXXADTAVFEQ-GASAGNVGNEKVVEQKKA 298
V NL+G+++S+ AG ++FE SA ++ + + A
Sbjct: 242 VASNLFGDILSDLGPACAGTIGIAPSANLNPERNFPSLFEPVHGSAPDIFGKNI-----A 296
Query: 299 NPVALLLSSAMMLRHL-----QFPSFADRLETAVKRVISEEKYRTKDLGGGCTTQQIVDA 353
NP+A++ S A+ML L ++ D + A++RVI++ T D+GG +TQQ+ A
Sbjct: 297 NPIAMIWSGALMLEFLGQGDERYQRAHDDMLNAIERVIADGSV-TPDMGGTLSTQQVGAA 355
Query: 354 V---IANLD 359
+ +A LD
Sbjct: 356 ISDTLARLD 364
>pdb|2AYQ|A Chain A, 3-Isopropylmalate Dehydrogenase From The Moderate
Facultative Thermophile, Bacillus Coagulans
pdb|2AYQ|B Chain B, 3-Isopropylmalate Dehydrogenase From The Moderate
Facultative Thermophile, Bacillus Coagulans
Length = 366
Score = 127 bits (319), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 116/365 (31%), Positives = 189/365 (51%), Gaps = 50/365 (13%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAM-----HAPIYFEKYEVHGDM-----KRVPQQVLDSI 81
+ ++PGDGIGP V +A +V++ + H + FE + G +P++ LD
Sbjct: 5 LAVLPGDGIGPEVMDAAIRVLKTVLDNDGHEAV-FENALIGGAAIDEAGTPLPEETLDIC 63
Query: 82 RKNKVCLKGGLKTP-VGGGVSSLN-----VQLRKELDL---------YAALVNCFNLPGL 126
R++ L G + P +SL + LRKE+ L YA L+N P
Sbjct: 64 RRSDAILLGAVGGPKWDHNPASLRPEKGLLGLRKEMGLFANLRPVKAYATLLNAS--PLK 121
Query: 127 PTRHQNVDIVVIRENTEGEYSGLEHEVV-PG---VVESLKVITKFCSERIAKYAFEYAYL 182
R +NVD+V++RE T G Y G E PG VV++L T+ ERI + AF+ A +
Sbjct: 122 RERVENVDLVIVRELTGGLYFGRPSERRGPGENEVVDTL-AYTREEIERIIEKAFQLAQI 180
Query: 183 NYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVM 242
RKK+ +V KAN+++ + ++ E E A KYP ++ + ++VD+ MQL++ P QFDV+
Sbjct: 181 R-RKKLASVDKANVLE-SSRMWREIAEETAKKYPDVELSHMLVDSTSMQLIANPGQFDVI 238
Query: 243 VTPNLYGNLVSNTAAGIAXXXXXXXXXXXXADT-AVFE--QGASAGNVGNEKVVEQKKAN 299
VT N++G+++S+ A+ I +D ++E G++ G Q KAN
Sbjct: 239 VTENMFGDILSDEASVITGSLGMLPSASLRSDRFGMYEPVHGSAPDIAG------QGKAN 292
Query: 300 PVALLLSSAMMLRH-LQFPSFADRLETAVKRVISEEKYRTKDL----GGGCTTQQIVDAV 354
P+ +LS+A+MLR+ A +E AV V+ ++ Y T DL G +T ++ D +
Sbjct: 293 PLGTVLSAALMLRYSFGLEKEAAAIEKAVDDVL-QDGYCTGDLQVANGKVVSTIELTDRL 351
Query: 355 IANLD 359
I L+
Sbjct: 352 IEKLN 356
>pdb|1V5B|A Chain A, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|B Chain B, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|C Chain C, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|D Chain D, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|E Chain E, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|F Chain F, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|G Chain G, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|H Chain H, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
Length = 366
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 116/365 (31%), Positives = 189/365 (51%), Gaps = 50/365 (13%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAM-----HAPIYFEKYEVHGDM-----KRVPQQVLDSI 81
+ ++PGDGIGP V +A +V++ + H + FE + G +P++ LD
Sbjct: 5 LAVLPGDGIGPEVMDAAIRVLKTVLDNDGHEAV-FENALIGGAAIDEAGTPLPEETLDIC 63
Query: 82 RKNKVCLKGGLKTP-VGGGVSSLN-----VQLRKELDL---------YAALVNCFNLPGL 126
R++ L G + P +SL + LRKE+ L YA L+N L
Sbjct: 64 RRSDAILLGAVGGPKWDHNPASLRPEKGLLGLRKEMGLFANLRPVKAYATLLNASPLK-- 121
Query: 127 PTRHQNVDIVVIRENTEGEYSGLEHEVV-PG---VVESLKVITKFCSERIAKYAFEYAYL 182
R +NVD+V++RE T G Y G E PG VV++L T+ ERI + AF+ A +
Sbjct: 122 RERVENVDLVIVRELTGGLYFGRPSERRGPGENEVVDTL-AYTREEIERIIEKAFQLAQI 180
Query: 183 NYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVM 242
RKK+ +V KAN+++ + ++ E E A KYP ++ + ++VD+ MQL++ P QFDV+
Sbjct: 181 R-RKKLASVDKANVLE-SSRMWREIAEETAKKYPDVELSHMLVDSTAMQLIANPGQFDVI 238
Query: 243 VTPNLYGNLVSNTAAGIAXXXXXXXXXXXXADT-AVFE--QGASAGNVGNEKVVEQKKAN 299
VT N++G+++S+ A+ I +D ++E G++ G Q KAN
Sbjct: 239 VTENMFGDILSDLASVITGSLGMLPSASLRSDRFGMYEPVHGSAPDIAG------QGKAN 292
Query: 300 PVALLLSSAMMLRH-LQFPSFADRLETAVKRVISEEKYRTKDL----GGGCTTQQIVDAV 354
P+ +LS+A+MLR+ A +E AV V+ ++ Y T DL G +T ++ D +
Sbjct: 293 PLGTVLSAALMLRYSFGLEKEAAAIEKAVDDVL-QDGYCTGDLQVANGKVVSTIELTDRL 351
Query: 355 IANLD 359
I L+
Sbjct: 352 IEKLN 356
>pdb|1V53|A Chain A, The Crystal Structure Of 3-Isopropylmalate Dehydrogenase
From Bacillus Coagulans
pdb|1V53|B Chain B, The Crystal Structure Of 3-Isopropylmalate Dehydrogenase
From Bacillus Coagulans
Length = 366
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 116/365 (31%), Positives = 189/365 (51%), Gaps = 50/365 (13%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAM-----HAPIYFEKYEVHGDM-----KRVPQQVLDSI 81
+ ++PGDGIGP V +A +V++ + H + FE + G +P++ LD
Sbjct: 5 LAVLPGDGIGPEVMDAAIRVLKTVLDNDGHEAV-FENALIGGAAIDEAGTPLPEETLDIC 63
Query: 82 RKNKVCLKGGLKTP-VGGGVSSLN-----VQLRKELDL---------YAALVNCFNLPGL 126
R++ L G + P +SL + LRKE+ L YA L+N L
Sbjct: 64 RRSDAILLGAVGGPKWDHNPASLRPEKGLLGLRKEMGLFANLRPVKAYATLLNASPLK-- 121
Query: 127 PTRHQNVDIVVIRENTEGEYSGLEHEVV-PG---VVESLKVITKFCSERIAKYAFEYAYL 182
R +NVD+V++RE T G Y G E PG VV++L T+ ERI + AF+ A +
Sbjct: 122 RERVENVDLVIVRELTGGLYFGRPSERRGPGENEVVDTL-AYTREEIERIIEKAFQLAQI 180
Query: 183 NYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVM 242
RKK+ +V KAN+++ + ++ E E A KYP ++ + ++VD+ MQL++ P QFDV+
Sbjct: 181 R-RKKLASVDKANVLE-SSRMWREIAEETAKKYPDVELSHMLVDSTSMQLIANPGQFDVI 238
Query: 243 VTPNLYGNLVSNTAAGIAXXXXXXXXXXXXADT-AVFE--QGASAGNVGNEKVVEQKKAN 299
VT N++G+++S+ A+ I +D ++E G++ G Q KAN
Sbjct: 239 VTENMFGDILSDEASVITGSLGMLPSASLRSDRFGMYEPVHGSAPDIAG------QGKAN 292
Query: 300 PVALLLSSAMMLRH-LQFPSFADRLETAVKRVISEEKYRTKDL----GGGCTTQQIVDAV 354
P+ +LS+A+MLR+ A +E AV V+ ++ Y T DL G +T ++ D +
Sbjct: 293 PLGTVLSAALMLRYSFGLEKEAAAIEKAVDDVL-QDGYCTGDLQVANGKVVSTIELTDRL 351
Query: 355 IANLD 359
I L+
Sbjct: 352 IEKLN 356
>pdb|1GC8|A Chain A, The Crystal Structure Of Thermus Thermophilus
3-Isopropylmalate Dehydrogenase Mutated At 172th From
Ala To Phe
pdb|1GC8|B Chain B, The Crystal Structure Of Thermus Thermophilus
3-Isopropylmalate Dehydrogenase Mutated At 172th From
Ala To Phe
Length = 345
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 102/351 (29%), Positives = 166/351 (47%), Gaps = 33/351 (9%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAP----IYFEKYEVHGDM-----KRVPQQVLDSIR 82
V ++PGDGIGP VT A +V+ A+ + +E + G + P+ +
Sbjct: 3 VAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVE 62
Query: 83 KNKVCLKGGLKTPVGGGV------SSLNVQLRKELDLYAALVNCFNLPGL----PTRHQ- 131
+ + L G + P G+ + + LRK DL+A L PGL P + +
Sbjct: 63 EAEAVLLGSVGGPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEI 122
Query: 132 --NVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVT 189
VD++++RE T G Y G + + + +K ER+A+ AFE+A RK V
Sbjct: 123 ARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFEFAR-KRRKHVV 181
Query: 190 AVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYG 249
+V KAN++++ + + ++ EV YP + VD M LV P +FDV+VT N++G
Sbjct: 182 SVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFG 240
Query: 250 NLVSNTAAGIAXXXXXXXXXXXXADTAVFEQ-GASAGNVGNEKVVEQKKANPVALLLSSA 308
+++S+ A+ + T VFE SA ++ + + ANP A +LS+A
Sbjct: 241 DILSDLASVLPGSLGLLPSASLGRGTPVFEPVHGSAPDIAGKGI-----ANPTAAILSAA 295
Query: 309 MMLRH-LQFPSFADRLETAVKRVISEEKYRTKDLGGGCTTQQIVDAVIANL 358
MML H A ++E AV + + E DLGG T+ V+ +L
Sbjct: 296 MMLEHAFGLVELARKVEDAVAKALLETP--PPDLGGSAGTEAFTATVLRHL 344
>pdb|1IDM|A Chain A, 3-Isopropylmalate Dehydrogenase, Loop-Deleted Chimera
Length = 343
Score = 125 bits (315), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 104/349 (29%), Positives = 164/349 (46%), Gaps = 31/349 (8%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAP----IYFEKYEVHGDM-----KRVPQQVLDSIR 82
V ++PGDGIGP VT A +V+ A+ + +E + G + P+ +
Sbjct: 3 VAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVE 62
Query: 83 KNKVCLKGGLKTPVGGGVSSLNVQ----LRKELDLYAALVNCFNLPGL----PTRHQ--- 131
+ + L G + P G S Q LRK DL+A L PGL P + +
Sbjct: 63 EAEAVLLGSVGGPKWGTGSVRPEQGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEIAR 122
Query: 132 NVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAV 191
VD++++RE T G Y G + + + +K ER+A+ AFE A RK V +V
Sbjct: 123 GVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFEAAR-KRRKHVVSV 181
Query: 192 HKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNL 251
KAN++++ + + ++ EV YP + VD M LV P +FDV+VT N++G++
Sbjct: 182 DKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDI 240
Query: 252 VSNTAAGIAXXXXXXXXXXXXADTAVFEQ-GASAGNVGNEKVVEQKKANPVALLLSSAMM 310
+S+ A+ + T VFE SA ++ + + ANP A +LS+AMM
Sbjct: 241 LSDLASVLPGSLGLLPSASLGRGTPVFEPVHGSAPDIAGKGI-----ANPTAAILSAAMM 295
Query: 311 LRH-LQFPSFADRLETAVKRVISEEKYRTKDLGGGCTTQQIVDAVIANL 358
L H A ++E AV + + E DLGG T+ V+ +L
Sbjct: 296 LEHAFGLVELARKVEDAVAKALLETP--PPDLGGSAGTEAFTATVLRHL 342
>pdb|1OSJ|A Chain A, Structure Of 3-isopropylmalate Dehydrogenase
pdb|1OSJ|B Chain B, Structure Of 3-isopropylmalate Dehydrogenase
Length = 345
Score = 125 bits (313), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 102/351 (29%), Positives = 165/351 (47%), Gaps = 33/351 (9%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAP----IYFEKYEVHGDM-----KRVPQQVLDSIR 82
V ++PGDGIGP VT A +V+ A+ + +E + G + P+ +
Sbjct: 3 VAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVE 62
Query: 83 KNKVCLKGGLKTPVGGGV------SSLNVQLRKELDLYAALVNCFNLPGL----PTRHQ- 131
+ + L G + P G+ + + LRK DL+A L PGL P + +
Sbjct: 63 EAEAVLLGSVGGPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEI 122
Query: 132 --NVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVT 189
VD++++RE T G Y G + + + +K ER+A+ AFE A RK V
Sbjct: 123 ARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFELAR-KRRKHVV 181
Query: 190 AVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYG 249
+V KAN++++ + + ++ EV YP + VD M LV P +FDV+VT N++G
Sbjct: 182 SVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFG 240
Query: 250 NLVSNTAAGIAXXXXXXXXXXXXADTAVFEQ-GASAGNVGNEKVVEQKKANPVALLLSSA 308
+++S+ A+ + T VFE SA ++ + + ANP A +LS+A
Sbjct: 241 DILSDLASVLPGSLGLLPSASLGRGTPVFEPVHGSAPDIAGKGI-----ANPTAAILSAA 295
Query: 309 MMLRH-LQFPSFADRLETAVKRVISEEKYRTKDLGGGCTTQQIVDAVIANL 358
MML H A ++E AV + + E DLGG T+ V+ +L
Sbjct: 296 MMLEHAFGLVELARKVEDAVAKALLETP--PPDLGGSAGTEAFTATVLRHL 344
>pdb|1WAL|A Chain A, 3-Isopropylmalate Dehydrogenase (Ipmdh) Mutant (M219a)from
Thermus Thermophilus
Length = 345
Score = 124 bits (312), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 102/351 (29%), Positives = 165/351 (47%), Gaps = 33/351 (9%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAP----IYFEKYEVHGDM-----KRVPQQVLDSIR 82
V ++PGDGIGP VT A +V+ A+ + +E + G + P+ +
Sbjct: 3 VAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVE 62
Query: 83 KNKVCLKGGLKTPVGGGV------SSLNVQLRKELDLYAALVNCFNLPGL----PTRHQ- 131
+ + L G + P G+ + + LRK DL+A L PGL P + +
Sbjct: 63 EAEAVLLGSVGGPKWDGLPRKISPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEI 122
Query: 132 --NVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVT 189
VD++++RE T G Y G + + + +K ER+A+ AFE A RK V
Sbjct: 123 ARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFEAAR-KRRKHVV 181
Query: 190 AVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYG 249
+V KAN++++ + + ++ EV YP + VD M LV P +FDV+VT N++G
Sbjct: 182 SVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAAAMHLVRSPARFDVVVTGNIFG 240
Query: 250 NLVSNTAAGIAXXXXXXXXXXXXADTAVFEQ-GASAGNVGNEKVVEQKKANPVALLLSSA 308
+++S+ A+ + T VFE SA ++ + + ANP A +LS+A
Sbjct: 241 DILSDLASVLPGSLGLLPSASLGRGTPVFEPVHGSAPDIAGKGI-----ANPTAAILSAA 295
Query: 309 MMLRH-LQFPSFADRLETAVKRVISEEKYRTKDLGGGCTTQQIVDAVIANL 358
MML H A ++E AV + + E DLGG T+ V+ +L
Sbjct: 296 MMLEHAFGLVELARKVEDAVAKALLETP--PPDLGGSAGTEAFTATVLRHL 344
>pdb|1G2U|A Chain A, The Structure Of The Mutant, A172v, Of 3-Isopropylmalate
Dehydrogenase From Thermus Thermophilus Hb8 : Its
Thermostability And Structure
Length = 345
Score = 124 bits (312), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 102/351 (29%), Positives = 165/351 (47%), Gaps = 33/351 (9%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAP----IYFEKYEVHGDM-----KRVPQQVLDSIR 82
V ++PGDGIGP VT A +V+ A+ + +E + G + P+ +
Sbjct: 3 VAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVE 62
Query: 83 KNKVCLKGGLKTPVGGGV------SSLNVQLRKELDLYAALVNCFNLPGL----PTRHQ- 131
+ + L G + P G+ + + LRK DL+A L PGL P + +
Sbjct: 63 EAEAVLLGSVGGPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEI 122
Query: 132 --NVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVT 189
VD++++RE T G Y G + + + +K ER+A+ AFE A RK V
Sbjct: 123 ARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFEVAR-KRRKHVV 181
Query: 190 AVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYG 249
+V KAN++++ + + ++ EV YP + VD M LV P +FDV+VT N++G
Sbjct: 182 SVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFG 240
Query: 250 NLVSNTAAGIAXXXXXXXXXXXXADTAVFEQ-GASAGNVGNEKVVEQKKANPVALLLSSA 308
+++S+ A+ + T VFE SA ++ + + ANP A +LS+A
Sbjct: 241 DILSDLASVLPGSLGLLPSASLGRGTPVFEPVHGSAPDIAGKGI-----ANPTAAILSAA 295
Query: 309 MMLRH-LQFPSFADRLETAVKRVISEEKYRTKDLGGGCTTQQIVDAVIANL 358
MML H A ++E AV + + E DLGG T+ V+ +L
Sbjct: 296 MMLEHAFGLVELARKVEDAVAKALLETP--PPDLGGSAGTEAFTATVLRHL 344
>pdb|1OSI|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|B Chain B, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|C Chain C, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|D Chain D, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1HEX|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase In Complex
With Nad+: Ligand-Induced Loop-Closing And Mechanism For
Cofactor Specificity
pdb|1XAA|A Chain A, 3-Isopropylmalate Dehydrogenase, Low Temperature (100k)
Structure
pdb|1XAB|A Chain A, 3-Isopropylmalate Dehydrogenase, Low Temperature (150k)
Structure
pdb|2ZTW|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase In Complex
With The Inhibitor And Nad+
Length = 345
Score = 124 bits (312), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 102/351 (29%), Positives = 165/351 (47%), Gaps = 33/351 (9%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAP----IYFEKYEVHGDM-----KRVPQQVLDSIR 82
V ++PGDGIGP VT A +V+ A+ + +E + G + P+ +
Sbjct: 3 VAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVE 62
Query: 83 KNKVCLKGGLKTPVGGGV------SSLNVQLRKELDLYAALVNCFNLPGL----PTRHQ- 131
+ + L G + P G+ + + LRK DL+A L PGL P + +
Sbjct: 63 EAEAVLLGSVGGPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEI 122
Query: 132 --NVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVT 189
VD++++RE T G Y G + + + +K ER+A+ AFE A RK V
Sbjct: 123 ARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFEAAR-KRRKHVV 181
Query: 190 AVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYG 249
+V KAN++++ + + ++ EV YP + VD M LV P +FDV+VT N++G
Sbjct: 182 SVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFG 240
Query: 250 NLVSNTAAGIAXXXXXXXXXXXXADTAVFEQ-GASAGNVGNEKVVEQKKANPVALLLSSA 308
+++S+ A+ + T VFE SA ++ + + ANP A +LS+A
Sbjct: 241 DILSDLASVLPGSLGLLPSASLGRGTPVFEPVHGSAPDIAGKGI-----ANPTAAILSAA 295
Query: 309 MMLRH-LQFPSFADRLETAVKRVISEEKYRTKDLGGGCTTQQIVDAVIANL 358
MML H A ++E AV + + E DLGG T+ V+ +L
Sbjct: 296 MMLEHAFGLVELARKVEDAVAKALLETP--PPDLGGSAGTEAFTATVLRHL 344
>pdb|1IPD|A Chain A, Three-Dimensional Structure Of A Highly Thermostable
Enzyme, 3- Isopropylmalate Dehydrogenase Of Thermus
Thermophilus At 2.2 Angstroms Resolution
Length = 345
Score = 124 bits (312), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 102/351 (29%), Positives = 165/351 (47%), Gaps = 33/351 (9%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAP----IYFEKYEVHGDM-----KRVPQQVLDSIR 82
V ++PGDGIGP VT A +V+ A+ + +E + G + P+ +
Sbjct: 3 VAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVE 62
Query: 83 KNKVCLKGGLKTPVGGGV------SSLNVQLRKELDLYAALVNCFNLPGL----PTRHQ- 131
+ + L G + P G+ + + LRK DL+A L PGL P + +
Sbjct: 63 EAEAVLLGSVGGPKWDGLPRKISPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEI 122
Query: 132 --NVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVT 189
VD++++RE T G Y G + + + +K ER+A+ AFE A RK V
Sbjct: 123 ARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFEAAR-KRRKHVV 181
Query: 190 AVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYG 249
+V KAN++++ + + ++ EV YP + VD M LV P +FDV+VT N++G
Sbjct: 182 SVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFG 240
Query: 250 NLVSNTAAGIAXXXXXXXXXXXXADTAVFEQ-GASAGNVGNEKVVEQKKANPVALLLSSA 308
+++S+ A+ + T VFE SA ++ + + ANP A +LS+A
Sbjct: 241 DILSDLASVLPGSLGLLPSASLGRGTPVFEPVHGSAPDIAGKGI-----ANPTAAILSAA 295
Query: 309 MMLRH-LQFPSFADRLETAVKRVISEEKYRTKDLGGGCTTQQIVDAVIANL 358
MML H A ++E AV + + E DLGG T+ V+ +L
Sbjct: 296 MMLEHAFGLVELARKVEDAVAKALLETP--PPDLGGSAGTEAFTATVLRHL 344
>pdb|1A05|A Chain A, Crystal Structure Of The Complex Of 3-Isopropylmalate
Dehydrogenase From Thiobacillus Ferrooxidans With 3-
Isopropylmalate
pdb|1A05|B Chain B, Crystal Structure Of The Complex Of 3-Isopropylmalate
Dehydrogenase From Thiobacillus Ferrooxidans With 3-
Isopropylmalate
Length = 358
Score = 124 bits (312), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 105/346 (30%), Positives = 159/346 (45%), Gaps = 38/346 (10%)
Query: 30 RAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHG---------DMKRVPQQVLDS 80
+ + + GDGIGP + A QV++A+ + G +P L
Sbjct: 2 KKIAIFAGDGIGPEIVAAARQVLDAVDQAAHLGLRCTEGLVGGAALDASDDPLPAASLQL 61
Query: 81 IRKNKVCLKGGLKTPVGGGVSSLN------VQLRKELDLYAALVNCFNLPGL-------P 127
+ G + P ++LRK LDLYA L P L P
Sbjct: 62 AMAADAVILGAVGGPRWDAYPPAKRPEQGLLRLRKGLDLYANLRPAQIFPQLLDASPLRP 121
Query: 128 TRHQNVDIVVIRENTEGEYSGLEH--EVVPGVVESLKVITKFCSE--RIAKYAFEYAYLN 183
++VDI+V+RE T Y G EV+ G + E RIA AF A
Sbjct: 122 ELVRDVDILVVRELTGDIYFGQPRGLEVIDGKRRGFNTMVYDEDEIRRIAHVAFRAAQ-G 180
Query: 184 YRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMV 243
RK++ +V KAN+++ L+ E EVA YP ++ + + VDN MQL+ P QFDV++
Sbjct: 181 RRKQLCSVDKANVLETTR-LWREVVTEVARDYPDVRLSHMYVDNAAMQLIRAPAQFDVLL 239
Query: 244 TPNLYGNLVSNTAAGIAXXXXXXXXXXXXADTAVFE--QGASAGNVGNEKVVEQKKANPV 301
T N++G+++S+ A+ + A++E G++ G Q KANP+
Sbjct: 240 TGNMFGDILSDEASQLTGSIGMLPSASLGEGRAMYEPIHGSAPDIAG------QDKANPL 293
Query: 302 ALLLSSAMMLRH-LQFPSFADRLETAVKRVISEEKYRTKDLGGGCT 346
A +LS AMMLRH L +A R+E AV+RV+ ++ RT D+ T
Sbjct: 294 ATILSVAMMLRHSLNAEPWAQRVEAAVQRVL-DQGLRTADIAAPGT 338
>pdb|1GC9|A Chain A, The Crystal Structure Of Thermus Thermophilus
3-Isopropylmalate Dehydrogenase Mutated At 172th From
Ala To Gly
Length = 345
Score = 124 bits (311), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 102/351 (29%), Positives = 165/351 (47%), Gaps = 33/351 (9%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAP----IYFEKYEVHGDM-----KRVPQQVLDSIR 82
V ++PGDGIGP VT A +V+ A+ + +E + G + P+ +
Sbjct: 3 VAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVE 62
Query: 83 KNKVCLKGGLKTPVGGGV------SSLNVQLRKELDLYAALVNCFNLPGL----PTRHQ- 131
+ + L G + P G+ + + LRK DL+A L PGL P + +
Sbjct: 63 EAEAVLLGSVGGPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEI 122
Query: 132 --NVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVT 189
VD++++RE T G Y G + + + +K ER+A+ AFE A RK V
Sbjct: 123 ARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFEGAR-KRRKHVV 181
Query: 190 AVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYG 249
+V KAN++++ + + ++ EV YP + VD M LV P +FDV+VT N++G
Sbjct: 182 SVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFG 240
Query: 250 NLVSNTAAGIAXXXXXXXXXXXXADTAVFEQ-GASAGNVGNEKVVEQKKANPVALLLSSA 308
+++S+ A+ + T VFE SA ++ + + ANP A +LS+A
Sbjct: 241 DILSDLASVLPGSLGLLPSASLGRGTPVFEPVHGSAPDIAGKGI-----ANPTAAILSAA 295
Query: 309 MMLRH-LQFPSFADRLETAVKRVISEEKYRTKDLGGGCTTQQIVDAVIANL 358
MML H A ++E AV + + E DLGG T+ V+ +L
Sbjct: 296 MMLEHAFGLVELARKVEDAVAKALLETP--PPDLGGSAGTEAFTATVLRHL 344
>pdb|1DR0|A Chain A, Structure Of Modified 3-isopropylmalate Dehydrogenase At
The C- Terminus, Hd708
pdb|1DR0|B Chain B, Structure Of Modified 3-isopropylmalate Dehydrogenase At
The C- Terminus, Hd708
Length = 346
Score = 124 bits (311), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 102/351 (29%), Positives = 164/351 (46%), Gaps = 33/351 (9%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAP----IYFEKYEVHGDM-----KRVPQQVLDSIR 82
V ++PGDGIGP VT A +V+ A+ + +E + G + P+ +
Sbjct: 3 VAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVE 62
Query: 83 KNKVCLKGGLKTPVGGGV------SSLNVQLRKELDLYAALVNCFNLPGL----PTRHQ- 131
+ + L G + P G+ + + LRK DL+A L PGL P + +
Sbjct: 63 EAEAVLLGSVGGPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEI 122
Query: 132 --NVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVT 189
VD++++RE T G Y G + + + +K ER+A+ AFE A RK V
Sbjct: 123 ARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFELAR-KRRKHVV 181
Query: 190 AVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYG 249
+V KAN++++ + + ++ EV YP + VD M LV P +FDV+VT N++G
Sbjct: 182 SVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFG 240
Query: 250 NLVSNTAAGIAXXXXXXXXXXXXADTAVFEQ-GASAGNVGNEKVVEQKKANPVALLLSSA 308
+++S+ A+ + T VFE SA ++ + + ANP A +LS+A
Sbjct: 241 DILSDLASVLPGSLGLLPSASLGRGTPVFEPVHGSAPDIAGKGI-----ANPTAAILSAA 295
Query: 309 MMLRH-LQFPSFADRLETAVKRVISEEKYRTKDLGGGCTTQQIVDAVIANL 358
MML H A ++E AV + + E DLGG T+ V A +
Sbjct: 296 MMLEHAFGLVELARKVEDAVAKALLETP--PPDLGGSAGTEAFTATVTATV 344
>pdb|2Y3Z|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Apo Enzyme
pdb|2Y40|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Mn
pdb|2Y40|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Mn
pdb|2Y41|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Ipm And Mn
pdb|2Y41|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Ipm And Mn
pdb|2Y42|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|2Y42|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|2Y42|C Chain C, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|2Y42|D Chain D, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|4F7I|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
pdb|4F7I|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
pdb|4F7I|C Chain C, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
pdb|4F7I|D Chain D, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
Length = 359
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 101/348 (29%), Positives = 163/348 (46%), Gaps = 33/348 (9%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAP----IYFEKYEVHGDM-----KRVPQQVLDSIR 82
V ++PGDGIGP VT A +V+ A+ + +E + G + P+ +
Sbjct: 6 VAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVE 65
Query: 83 KNKVCLKGGLKTPVGGGV------SSLNVQLRKELDLYAALVNCFNLPGL----PTRHQ- 131
+ + L G + P G+ + + LRK DL+A L PGL P + +
Sbjct: 66 EAEAVLLGSVGGPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEI 125
Query: 132 --NVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVT 189
VD++++RE T G Y G + + + +K ER+A+ AFE A RK V
Sbjct: 126 ARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFEAAR-KRRKHVV 184
Query: 190 AVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYG 249
+V KAN++++ + + ++ EV YP + VD M LV P +FDV+VT N++G
Sbjct: 185 SVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFG 243
Query: 250 NLVSNTAAGIAXXXXXXXXXXXXADTAVFEQ-GASAGNVGNEKVVEQKKANPVALLLSSA 308
+++S+ A+ + T VFE SA ++ + + ANP A +LS+A
Sbjct: 244 DILSDLASVLPGSLGLLPSASLGRGTPVFEPVHGSAPDIAGKGI-----ANPTAAILSAA 298
Query: 309 MMLRH-LQFPSFADRLETAVKRVISEEKYRTKDLGGGCTTQQIVDAVI 355
MML H A ++E AV + + E DLGG T+ V+
Sbjct: 299 MMLEHAFGLVELARKVEDAVAKALLETP--PPDLGGSAGTEAFTATVL 344
>pdb|1DR8|A Chain A, Structure Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd177
pdb|1DR8|B Chain B, Structure Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd177
Length = 344
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 101/347 (29%), Positives = 162/347 (46%), Gaps = 33/347 (9%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAP----IYFEKYEVHGDM-----KRVPQQVLDSIR 82
V ++PGDGIGP VT A +V+ A+ + +E + G + P+ +
Sbjct: 3 VAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVE 62
Query: 83 KNKVCLKGGLKTPVGGGV------SSLNVQLRKELDLYAALVNCFNLPGL----PTRHQ- 131
+ + L G + P G+ + + LRK DL+A L PGL P + +
Sbjct: 63 EAEAVLLGSVGGPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEI 122
Query: 132 --NVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVT 189
VD++++RE T G Y G + + + +K ER+A+ AFE A RK V
Sbjct: 123 ARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFELAR-KRRKHVV 181
Query: 190 AVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYG 249
+V KAN++++ + + ++ EV YP + VD M LV P +FDV+VT N++G
Sbjct: 182 SVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFG 240
Query: 250 NLVSNTAAGIAXXXXXXXXXXXXADTAVFEQ-GASAGNVGNEKVVEQKKANPVALLLSSA 308
+++S+ A+ + T VFE SA ++ + + ANP A +LS+A
Sbjct: 241 DILSDLASVLPGSLGLLPSASLGRGTPVFEPVHGSAPDIAGKGI-----ANPTAAILSAA 295
Query: 309 MMLRH-LQFPSFADRLETAVKRVISEEKYRTKDLGGGCTTQQIVDAV 354
MML H A ++E AV + + E DLGG T+ V
Sbjct: 296 MMLEHAFGLVELARKVEDAVAKALLETP--PPDLGGSAGTEAFTATV 340
>pdb|1DPZ|A Chain A, Stucture Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd711
pdb|1DPZ|B Chain B, Stucture Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd711
Length = 349
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 102/349 (29%), Positives = 163/349 (46%), Gaps = 33/349 (9%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAP----IYFEKYEVHGDM-----KRVPQQVLDSIR 82
V ++PGDGIGP VT A +V+ A+ + +E + G + P+ +
Sbjct: 3 VAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVE 62
Query: 83 KNKVCLKGGLKTPVGGGV------SSLNVQLRKELDLYAALVNCFNLPGL----PTRHQ- 131
+ + L G + P G+ + + LRK DL+A L PGL P + +
Sbjct: 63 EAEAVLLGSVGGPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEI 122
Query: 132 --NVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVT 189
VD++++RE T G Y G + + + +K ER+A+ AFE A RK V
Sbjct: 123 ARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFELAR-KRRKHVV 181
Query: 190 AVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYG 249
+V KAN++++ + + ++ EV YP + VD M LV P +FDV+VT N++G
Sbjct: 182 SVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFG 240
Query: 250 NLVSNTAAGIAXXXXXXXXXXXXADTAVFEQ-GASAGNVGNEKVVEQKKANPVALLLSSA 308
+++S+ A+ + T VFE SA ++ + + ANP A +LS+A
Sbjct: 241 DILSDLASVLPGSLGLLPSASLGRGTPVFEPVHGSAPDIAGKGI-----ANPTAAILSAA 295
Query: 309 MMLRH-LQFPSFADRLETAVKRVISEEKYRTKDLGGGCTTQQIVDAVIA 356
MML H A ++E AV + + E DLGG T+ V A
Sbjct: 296 MMLEHAFGLVELARKVEDAVAKALLETP--PPDLGGSAGTEAFTATVEA 342
>pdb|1XAC|A Chain A, Chimera Isopropylmalate Dehydrogenase Between Bacillus
Subtilis (M) And Thermus Thermophilus (T) From
N-Terminal: 20% T Middle 20% M Residual 60% T, Mutated
At S82r. Low Temperature (100k) Structure.
pdb|1XAD|A Chain A, Chimera Isopropylmalate Dehydrogenase Between Bacillus
Subtilis (M) And Thermus Thermophilus (T) From
N-Terminal: 20% T Middle 20% M Residual 60% T, Mutated
At S82r. Low Temperature (150k) Structure
Length = 345
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 105/355 (29%), Positives = 165/355 (46%), Gaps = 41/355 (11%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAP----IYFEKYEVHGDM-----KRVPQQVLDSIR 82
V ++PGDGIGP VT A +V+ A+ + +E + G + P+ +
Sbjct: 3 VAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVE 62
Query: 83 KNKVCLKGGLKTPVGGGVSSLN----------VQLRKELDLYAAL--VNCFNL--PGLPT 128
+ + L G VGG N + +RK+LDL+A L V F P
Sbjct: 63 EAEAVLLGS----VGGPKWDQNPRELRPEKGLLSIRKQLDLFANLRPVKVFESLSDASPL 118
Query: 129 RHQ---NVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNYR 185
+ + NVD V++RE T G Y G + + + +K ER+A+ AFE A R
Sbjct: 119 KKEYIDNVDFVIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFEAAR-KRR 177
Query: 186 KKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTP 245
K V +V KAN++++ + + ++ EV YP + VD M LV P +FDV+VT
Sbjct: 178 KHVVSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTG 236
Query: 246 NLYGNLVSNTAAGIAXXXXXXXXXXXXADTAVFEQ-GASAGNVGNEKVVEQKKANPVALL 304
N++G+++S+ A+ + T VFE SA ++ + + ANP A +
Sbjct: 237 NIFGDILSDLASVLPGSLGLLPSASLGRGTPVFEPVHGSAPDIAGKGI-----ANPTAAI 291
Query: 305 LSSAMMLRH-LQFPSFADRLETAVKRVISEEKYRTKDLGGGCTTQQIVDAVIANL 358
LS+AMML H A ++E AV + + E DLGG T+ V+ +L
Sbjct: 292 LSAAMMLEHAFGLVELARKVEDAVAKALLETP--PPDLGGSAGTEAFTATVLRHL 344
>pdb|1W0D|A Chain A, The High Resolution Structure Of Mycobacterium
Tuberculosis Leub (Rv2995c)
pdb|1W0D|B Chain B, The High Resolution Structure Of Mycobacterium
Tuberculosis Leub (Rv2995c)
pdb|1W0D|C Chain C, The High Resolution Structure Of Mycobacterium
Tuberculosis Leub (Rv2995c)
pdb|1W0D|D Chain D, The High Resolution Structure Of Mycobacterium
Tuberculosis Leub (Rv2995c)
pdb|2G4O|A Chain A, Anomalous Substructure Of 3-isopropylmalate Dehydrogenase
pdb|2G4O|B Chain B, Anomalous Substructure Of 3-isopropylmalate Dehydrogenase
pdb|2G4O|C Chain C, Anomalous Substructure Of 3-isopropylmalate Dehydrogenase
pdb|2G4O|D Chain D, Anomalous Substructure Of 3-isopropylmalate Dehydrogenase
Length = 337
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 98/334 (29%), Positives = 163/334 (48%), Gaps = 30/334 (8%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEV-----HGDMKRVPQQVLDSIRKNKV 86
+ +I GDGIGP VT +V++A+ + Y++ H + +P V+ +R +
Sbjct: 4 LAIIAGDGIGPEVTAEAVKVLDAVVPGVQKTSYDLGARRFHATGEVLPDSVVAELRNHDA 63
Query: 87 CLKGGL---KTPVGGGVSSLNVQLRKELDLYAALVNCFNLPGLPT---RHQNVDIVVIRE 140
L G + P G L ++LR ELD + L PG+ + + +D VV+RE
Sbjct: 64 ILLGAIGDPSVPSGVLERGLLLRLRFELDHHINLRPARLYPGVASPLSGNPGIDFVVVRE 123
Query: 141 NTEGEYSGLEHEVVPG----VVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANI 196
TEG Y+G + G V + V T F R+ AFE A RK +T VHK N+
Sbjct: 124 GTEGPYTGNGGAIRVGTPNEVATEVSVNTAFGVRRVVADAFERAR-RRRKHLTLVHKTNV 182
Query: 197 MKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTA 256
+ A GL+L + EV YP ++ VD + +++ P +FDV+VT NL+G+++++ A
Sbjct: 183 LTFAGGLWLRTVDEVGECYPDVEVAYQHVDAATIHMITDPGRFDVIVTDNLFGDIITDLA 242
Query: 257 AGIAXX---XXXXXXXXXXADTAVFE--QGASAGNVGNEKVVEQKKANPVALLLSSAMML 311
A + A+ ++FE G++ + Q A+P A ++S A++L
Sbjct: 243 AAVCGGIGLAASGNIDATRANPSMFEPVHGSA------PDIAGQGIADPTAAIMSVALLL 296
Query: 312 RHLQFPSFADRLETAVKRVIS---EEKYRTKDLG 342
HL A R++ AV+ ++ E+ T D+G
Sbjct: 297 SHLGEHDAAARVDRAVEAHLATRGSERLATSDVG 330
>pdb|3FLK|A Chain A, Crystal Structure Of Tartrate Dehydrogenase From
Pseudomonas Complex With Nadh, Oxalate And Metal Ion
pdb|3FLK|B Chain B, Crystal Structure Of Tartrate Dehydrogenase From
Pseudomonas Complex With Nadh, Oxalate And Metal Ion
pdb|3FLK|C Chain C, Crystal Structure Of Tartrate Dehydrogenase From
Pseudomonas Complex With Nadh, Oxalate And Metal Ion
pdb|3FLK|D Chain D, Crystal Structure Of Tartrate Dehydrogenase From
Pseudomonas Complex With Nadh, Oxalate And Metal Ion
Length = 364
Score = 117 bits (294), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 108/369 (29%), Positives = 173/369 (46%), Gaps = 53/369 (14%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAM---HA-PIYFEKYEV--------HGDMKRVPQQVLD 79
+ IPGDGIG V +V+EA H + F+ +E HG K P +
Sbjct: 8 IAAIPGDGIGLEVLPEGIRVLEAAALKHGLALEFDTFEWASCDYYLQHG--KXXPDDWAE 65
Query: 80 SIRKNKVCLKGGLKTP--VGGGVSSLN--VQLRKELDLYAALVNCFNLPGLPTRHQN--- 132
+++ G + P V +S ++ R+E D Y + PG+P N
Sbjct: 66 QLKQYDAIYFGAVGWPDKVPDHISLWGSLLKFRREFDQYVNIRPVRLFPGVPCALANRKV 125
Query: 133 --VDIVVIRENTEGEYSGL--------EHEVVPGVVESLKVITKFCSERIAKYAFEYAYL 182
+D VV+RENTEGEYS L E+E+V + ES + T+ +RI KYAF+ A
Sbjct: 126 GDIDFVVVRENTEGEYSSLGGIXFENTENEIV--IQES--IFTRRGVDRILKYAFDLAEK 181
Query: 183 NYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVM 242
RK VT+ K+N ++ + + A YP + +++ +D C + V +PE+FDV+
Sbjct: 182 RERKHVTSATKSNGXAISXPYWDKRTEAXAAHYPHVSWDKQHIDILCARFVLQPERFDVV 241
Query: 243 VTPNLYGNLVSN---TAAGIAXXXXXXXXXXXXADTAVFEQ-GASAGNVGNEKVVEQKKA 298
V NL+G+++S+ AG ++FE SA ++ + + A
Sbjct: 242 VASNLFGDILSDLGPACAGTIGIAPSANLNPERNFPSLFEPVHGSAPDIFGKNI-----A 296
Query: 299 NPVALLLSSAMMLRHL-----QFPSFADRLETAVKRVISEEKYRTKDLGGGCTTQQIVDA 353
NP+A + S A+ L L ++ D A++RVI++ T D GG +TQQ+ A
Sbjct: 297 NPIAXIWSGALXLEFLGQGDERYQRAHDDXLNAIERVIADGSV-TPDXGGTLSTQQVGAA 355
Query: 354 V---IANLD 359
+ +A LD
Sbjct: 356 ISDTLARLD 364
>pdb|4IWH|A Chain A, Crystal Structure Of A 3-isopropylmalate Dehydrogenase
From Burkholderia Pseudomallei
pdb|4IWH|B Chain B, Crystal Structure Of A 3-isopropylmalate Dehydrogenase
From Burkholderia Pseudomallei
Length = 363
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 108/366 (29%), Positives = 172/366 (46%), Gaps = 52/366 (14%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAM-------HAPIYFEKYEVHGDMKRVPQQVLDSIRKN 84
+ ++PGDGIGP + N +V+ A+ HAP+ YE G +P L ++
Sbjct: 11 IAVLPGDGIGPEIVNEAVKVLNALDEKFELEHAPVGGAGYEASG--HPLPDATLALAKEA 68
Query: 85 KVCLKGGLKTPVGGGVSSLN---------VQLRKELDLYAALVNCFNLPGL-------PT 128
L G + SL + LRK L+L+A P L P
Sbjct: 69 DAILFGAVGD---WKYDSLERALRPEQAILGLRKHLELFANFRPAICYPQLVDASPLKPE 125
Query: 129 RHQNVDIVVIRENTEGEYSGLEHEVV-----PGVVESLKVITKFCSE----RIAKYAFEY 179
+DI+++RE Y G V P E T SE RIA AF+
Sbjct: 126 LVAGLDILIVRELNGDIYFGQPRGVRAAPDGPFAGEREGFDTMRYSEPEVRRIAHVAFQA 185
Query: 180 AYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQF 239
A KK+ +V K+N+++ + + + +V+ +Y ++ + + VDN MQL P+QF
Sbjct: 186 AQ-KRAKKLLSVDKSNVLETSQ-FWRDVMIDVSKEYADVELSHMYVDNAAMQLAKAPKQF 243
Query: 240 DVMVTPNLYGNLVSNTAAGIAXXXXXXXXXXXXADT-AVFEQG-ASAGNVGNEKVVEQKK 297
DV+VT N++G+++S+ A+ + + ++E SA ++ + +
Sbjct: 244 DVIVTGNMFGDILSDEASMLTGSIGMLPSASLDKNNKGLYEPSHGSAPDIAGKGI----- 298
Query: 298 ANPVALLLSSAMMLRH-LQFPSFADRLETAVKRVISEEKYRTKDLGG-GCT---TQQIVD 352
ANP+A +LS+AM+LR+ L ADR+E AVK V+ E+ YRT D+ GC T + D
Sbjct: 299 ANPLATILSAAMLLRYSLNRAEQADRIERAVKTVL-EQGYRTGDIATPGCRQVGTAAMGD 357
Query: 353 AVIANL 358
AV+A L
Sbjct: 358 AVVAAL 363
>pdb|1CNZ|A Chain A, 3-Isopropylmalate Dehydrogenase (Ipmdh) From Salmonella
Typhimurium
pdb|1CNZ|B Chain B, 3-Isopropylmalate Dehydrogenase (Ipmdh) From Salmonella
Typhimurium
Length = 363
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 100/347 (28%), Positives = 160/347 (46%), Gaps = 39/347 (11%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRV---------PQQVLDSIR 82
+ ++PGDGIGP V +VM+A+ + H D+ + P+ ++
Sbjct: 7 IAVLPGDGIGPEVMAQALKVMDAVRSRFDMRITTSHYDVGGIAIDNHGHPLPKATVEGCE 66
Query: 83 KNKVCLKGGLKTPVGGGVSSLN-------VQLRKELDLYAALVNCFNLPGL----PTRHQ 131
+ L G + P + + + LRK L++ L GL P R
Sbjct: 67 QADAILFGSVGGPKWENLPPESQPERGALLPLRKHFKLFSNLRPAKLYQGLEAFCPLRAD 126
Query: 132 ----NVDIVVIRENTEGEYSGL-EHEVVPGVVE---SLKVITKFCSERIAKYAFEYAYLN 183
DI+ +RE T G Y G + G E +V +F ERIA+ AFE A
Sbjct: 127 IAANGFDILCVRELTGGIYFGQPKGREGSGQYEKAFDTEVYHRFEIERIARIAFESAR-K 185
Query: 184 YRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMV 243
R+KVT++ KAN+++ + L+ E +VA YP ++ + +DN MQL+ P QFDV++
Sbjct: 186 RRRKVTSIDKANVLQ-SSILWREIVNDVAKTYPDVELAHMYIDNATMQLIKDPSQFDVLL 244
Query: 244 TPNLYGNLVSNTAAGIAXXXXXXXXXXXXADT-AVFE-QGASAGNVGNEKVVEQKKANPV 301
NL+G+++S+ A I ++E G SA ++ + + ANP+
Sbjct: 245 CSNLFGDILSDECAMITGSMGMLPSASLNEQGFGLYEPAGGSAPDIAGKNI-----ANPI 299
Query: 302 ALLLSSAMMLRH-LQFPSFADRLETAVKRVISEEKYRTKDLGGGCTT 347
A +LS A++LR+ L A +E A+ R + EE RT DL G
Sbjct: 300 AQILSLALLLRYSLDANDAATAIEQAINRAL-EEGVRTGDLARGAAA 345
>pdb|1CM7|A Chain A, 3-Isopropylmalate Dehydrogenase From Escherichia Coli
pdb|1CM7|B Chain B, 3-Isopropylmalate Dehydrogenase From Escherichia Coli
Length = 363
Score = 108 bits (269), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 102/347 (29%), Positives = 161/347 (46%), Gaps = 39/347 (11%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMH----APIYFEKYEVHGDM-----KRVPQQVLDSIR 82
+ ++PGDGIGP V +V++A+ I Y+V G + +P ++
Sbjct: 7 IAVLPGDGIGPEVMTQALKVLDAVRNRFAMRITTSHYDVGGAAIDNHGQPLPPATVEGCE 66
Query: 83 KNKVCLKGGLKTPVGGGVSSLN-------VQLRKELDLYAALVNCFNLPGL----PTRHQ 131
+ L G + P + + LRK L++ L GL P R
Sbjct: 67 QADAVLFGSVGGPKWEHLPPDQQPERGALLPLRKHFKLFSNLRPAKLYQGLEAFCPLRAD 126
Query: 132 ----NVDIVVIRENTEGEYSGL-EHEVVPGVVE---SLKVITKFCSERIAKYAFEYAYLN 183
DI+ +RE T G Y G + G E +V +F ERIA+ AFE A
Sbjct: 127 IAANGFDILCVRELTGGIYFGQPKGREGSGQYEKAFDTEVYHRFEIERIARIAFESAR-K 185
Query: 184 YRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMV 243
R KVT++ KAN+++ + L+ E E+AT+YP ++ + +DN MQL+ P QFDV++
Sbjct: 186 RRHKVTSIDKANVLQ-SSILWREIVNEIATEYPDVELAHMYIDNATMQLIKDPSQFDVLL 244
Query: 244 TPNLYGNLVSNTAAGIAXXXXXXXXXXXXADT-AVFE-QGASAGNVGNEKVVEQKKANPV 301
NL+G+++S+ A I ++E G SA ++ + + ANP+
Sbjct: 245 CSNLFGDILSDECAMITGSMGMLPSASLNEQGFGLYEPAGGSAPDIAGKNI-----ANPI 299
Query: 302 ALLLSSAMMLRH-LQFPSFADRLETAVKRVISEEKYRTKDLGGGCTT 347
A +LS A++LR+ L A +E A+ R + EE RT DL G
Sbjct: 300 AQILSLALLLRYSLDADDAACAIERAINRAL-EEGIRTGDLARGAAA 345
>pdb|3VMK|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Benthica
Db21 Mt-2
pdb|3VMK|B Chain B, 3-Isopropylmalate Dehydrogenase From Shewanella Benthica
Db21 Mt-2
Length = 375
Score = 107 bits (267), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 100/338 (29%), Positives = 155/338 (45%), Gaps = 48/338 (14%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHA----PIYFEKYEVHGDMKR-----VPQQVLDSIR 82
+ ++ GDGIGP V +V+ A+ I + +Y+V G +P+ L
Sbjct: 16 IAVLAGDGIGPEVMAEARKVLAAVEKRFDLSIEYSEYDVGGAAIDNHGCPLPEATLKGCE 75
Query: 83 KNKVCLKGGLKTPVGGGVSSLN-------VQLRKELDLYAALVNCFNLPGL----PTR-- 129
L G + P + + + LR +L+ + PGL P R
Sbjct: 76 AADAVLFGSVGGPKWEHLPPNDQPERGALLPLRGHFELFCNMRPAKLHPGLEHMSPLRSD 135
Query: 130 --HQNVDIVVIRENTEGEY---------SGLEHEVVPGVVESLKVITKFCSERIAKYAFE 178
+ DI+ +RE T G Y G E + S K I RIAK AFE
Sbjct: 136 ISEKGFDILCVRELTGGIYFGKPKGRQGEGENEEAFDTMRYSRKEI-----RRIAKIAFE 190
Query: 179 YAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQ 238
A RKKVT+V KAN++ + L+ E EVA YP ++ I +DN MQL+ +P +
Sbjct: 191 SAQ-GRRKKVTSVDKANVLACSV-LWREVVEEVAKDYPDVELEHIYIDNATMQLLRRPNE 248
Query: 239 FDVMVTPNLYGNLVSNTAAGIAXXXXXXXXXXXXADT-AVFE-QGASAGNVGNEKVVEQK 296
FDVM+ NL+G++VS+ A + + ++E G SA ++ + +
Sbjct: 249 FDVMLCSNLFGDIVSDEIAMLTGSMGLLASISMNSQGFGMYEPAGGSAPDIAGQGI---- 304
Query: 297 KANPVALLLSSAMMLRH-LQFPSFADRLETAVKRVISE 333
ANPVA +LS+A++LRH L+ A +E AV + +S+
Sbjct: 305 -ANPVAQILSAALLLRHSLKLEDAALAIEAAVSKALSD 341
>pdb|3R8W|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2
From Arabidopsis Thaliana At 2.2 Angstrom Resolution
pdb|3R8W|B Chain B, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2
From Arabidopsis Thaliana At 2.2 Angstrom Resolution
pdb|3R8W|C Chain C, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2
From Arabidopsis Thaliana At 2.2 Angstrom Resolution
pdb|3R8W|D Chain D, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2
From Arabidopsis Thaliana At 2.2 Angstrom Resolution
Length = 405
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 102/346 (29%), Positives = 167/346 (48%), Gaps = 50/346 (14%)
Query: 32 VTLIPGDGIGP----LVTNAVEQVMEAMHAPIYFEKYEVHG---DMKRVP--QQVLDSIR 82
+TL+PGDGIGP + N ++Q F + + G D+ VP ++ + + +
Sbjct: 45 ITLLPGDGIGPEVVSIAKNVLQQAGSLEGVEFNFREMPIGGAALDLVGVPLPEETISAAK 104
Query: 83 KNKVCLKGGLKTPVGGGVSSLN-----------VQLRKELDLYAALVNCFNLPGLPTRH- 130
++ L G + GG N +Q+R L ++A L LP L
Sbjct: 105 ESDAVLLGAI-----GGYKWDNNEKHLRPEKGLLQIRAALKVFANLRPATVLPQLVDAST 159
Query: 131 ------QNVDIVVIRENTEGEYSG-----LEHEVVPGVVESLKVITKFCSERIAKYAFEY 179
+ VD++V+RE T G Y G +E V + +V +RIA+ AFE
Sbjct: 160 LKREVAEGVDLMVVRELTGGIYFGEPRGIKTNENGEEVGFNTEVYAAHEIDRIARVAFET 219
Query: 180 AYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQF 239
A R K+ +V KAN+++ A L+ + +A++YP ++ + + VDN MQLV P+QF
Sbjct: 220 AR-KRRGKLCSVDKANVLE-ASILWRKRVTALASEYPDVELSHMYVDNAAMQLVRDPKQF 277
Query: 240 DVMVTPNLYGNLVSNTAAGI-AXXXXXXXXXXXXADTAVFE--QGASAGNVGNEKVVEQK 296
D +VT N++G+++S+ A+ I + +FE G++ G Q
Sbjct: 278 DTIVTNNIFGDILSDEASMITGSIGMLPSASLSDSGPGLFEPIHGSAPDIAG------QD 331
Query: 297 KANPVALLLSSAMMLRH-LQFPSFADRLETAVKRVISEEKYRTKDL 341
KANP+A +LS+AM+L++ L A R+E AV V +RT D+
Sbjct: 332 KANPLATILSAAMLLKYGLGEEKAAKRIEDAV-LVALNNGFRTGDI 376
>pdb|3VML|A Chain A, Chimera 3-Isopropylmalate Dehydrogenase Between Shewanella
Oneidensis Mr-1 (O) And Shewanella Benthica Db21 Mt-2
(M) From N-Terminal: 20% O Middle 70% M Residual 10% O
Length = 375
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 103/346 (29%), Positives = 160/346 (46%), Gaps = 49/346 (14%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAP----IYFEKYEVHGDMKR-----VPQQVLDSIR 82
+ ++ GDGIGP V +V++A+ A I + +Y+V G +P+ L
Sbjct: 16 IAVLAGDGIGPEVMAEARKVLKAVEARFGLNIEYTEYDVGGIAIDNHGCPLPEATLKGCE 75
Query: 83 KNKVCLKGGLKTPVGGGVSSLN-------VQLRKELDLYAALVNCFNLPGL----PTR-- 129
L G + P + + + LR +L+ + PGL P R
Sbjct: 76 AADAVLFGSVGGPKWEHLPPNDQPERGALLPLRGHFELFCNMRPAKLHPGLEHMSPLRSD 135
Query: 130 --HQNVDIVVIRENTEGEY---------SGLEHEVVPGVVESLKVITKFCSERIAKYAFE 178
+ DI+ +RE T G Y G E + S K I RIAK AFE
Sbjct: 136 ISEKGFDILCVRELTGGIYFGKPKGRQGEGENEEAFDTMRYSRKEI-----RRIAKIAFE 190
Query: 179 YAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQ 238
A RKKVT+V KAN++ + L+ E EVA YP ++ I +DN MQL+ +P +
Sbjct: 191 SAQ-GRRKKVTSVDKANVLACSV-LWREVVEEVAKDYPDVELEHIYIDNATMQLLRRPNE 248
Query: 239 FDVMVTPNLYGNLVSNTAAGIAXXXXXXXXXXXXADT-AVFE-QGASAGNVGNEKVVEQK 296
FDVM+ NL+G++VS+ A + + ++E G SA ++ + +
Sbjct: 249 FDVMLCSNLFGDIVSDEIAMLTGSMGLLASISMNSQGFGMYEPAGGSAPDIAGQGI---- 304
Query: 297 KANPVALLLSSAMMLRH-LQFPSFADRLETAVKRVISEEKYRTKDL 341
ANPVA +LS+A++LRH L+ A +E AV + ++ Y T +L
Sbjct: 305 -ANPVAQILSAALLLRHSLKLEDAALAIEAAVSKALN-SGYLTGEL 348
>pdb|3VKZ|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At Atmospheric Pressure
pdb|3VL2|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 160 Mpa
pdb|3VL3|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 340 Mpa
pdb|3VL4|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 410 Mpa
pdb|3VL6|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 580 Mpa
pdb|3VL7|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 650 Mpa
pdb|3VMJ|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1
Length = 375
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 100/347 (28%), Positives = 161/347 (46%), Gaps = 51/347 (14%)
Query: 32 VTLIPGDGIGPLVTNAVEQVMEAMHAP----IYFEKYEVHGDMKR-----VPQQVLDSIR 82
+ ++ GDGIGP V +V++A+ A I + +Y+V G +P+ L
Sbjct: 16 IAVLAGDGIGPEVMAEARKVLKAVEARFGLNIEYTEYDVGGIAIDNHGCPLPEATLKGCE 75
Query: 83 KNKVCLKGGLKTPVGGGVSSLNVQ--------LRKELDLYAALVNCFNLPGL----PTRH 130
L G + P + N Q LR +L+ L GL P R
Sbjct: 76 AADAILFGSVGGPKWEKLPP-NEQPERGALLPLRGHFELFCNLRPAKLHDGLEHMSPLRS 134
Query: 131 ----QNVDIVVIRENTEGEY---------SGLEHEVVPGVVESLKVITKFCSERIAKYAF 177
+ D++ +RE T G Y G E + S + I+ RIA+ AF
Sbjct: 135 DISARGFDVLCVRELTGGIYFGKPKGRQGEGESEEAFDTMRYSRREIS-----RIARIAF 189
Query: 178 EYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPE 237
E A RKKVT+V KAN++ + L+ + EVA +P ++ I +DN MQL+ +P+
Sbjct: 190 EAAR-GRRKKVTSVDKANVLACSV-LWRQVVEEVAVDFPDVELEHIYIDNATMQLLRRPD 247
Query: 238 QFDVMVTPNLYGNLVSNTAAGIAXXXXXXXXXXXXADT-AVFE-QGASAGNVGNEKVVEQ 295
+FDVM+ NL+G+++S+ A + + +FE G SA ++ + +
Sbjct: 248 EFDVMLCSNLFGDILSDEIAMLTGSMGLLSSASMNSTGFGLFEPAGGSAPDIAGKGI--- 304
Query: 296 KKANPVALLLSSAMMLRH-LQFPSFADRLETAVKRVISEEKYRTKDL 341
ANP+A +LS+A+MLRH L+ A +E AV + ++ Y T +L
Sbjct: 305 --ANPIAQILSAALMLRHSLKQEEAASAIERAVTKALN-SGYLTGEL 348
>pdb|3UDU|A Chain A, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|B Chain B, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|C Chain C, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|D Chain D, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|E Chain E, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|F Chain F, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|G Chain G, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|H Chain H, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
Length = 361
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 97/340 (28%), Positives = 158/340 (46%), Gaps = 42/340 (12%)
Query: 32 VTLIPGDGIGPLVTNAVEQVM-----------EAMHAPIYFEKYEVHGDMKRVPQQVLDS 80
V ++ GDGIGPLV +++ E A I + +G + + L
Sbjct: 9 VAVLAGDGIGPLVMKEALKILTFIAQKYNFSFELNEAKIGGASIDAYG--VALSDETLKL 66
Query: 81 IRKNKVCLKGGLKTPVGGGV--------SSLNVQLRKELDLYAALVNCFNLPGL----PT 128
++ L G + P + +SL + LRK +L+A L C L P
Sbjct: 67 CEQSDAILFGSVGGPKWDNLPIDQRPERASL-LPLRKHFNLFANLRPCKIYESLTHASPL 125
Query: 129 RHQ----NVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNY 184
+++ VDI+ +RE T G Y G + ++ ++ TK ERIA+ AFE A +
Sbjct: 126 KNEIIQKGVDILCVRELTGGIYFG-KQDLGKESAYDTEIYTKKEIERIARIAFESARIR- 183
Query: 185 RKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVT 244
+KKV + KAN++ + L+ E VA Y I + VDN MQ+V P FDVM+
Sbjct: 184 KKKVHLIDKANVLA-SSILWREVVANVAKDYQDINLEYMYVDNAAMQIVKNPSIFDVMLC 242
Query: 245 PNLYGNLVSNTAAGI-AXXXXXXXXXXXXADTAVFE-QGASAGNVGNEKVVEQKKANPVA 302
NL+G+++S+ A I ++E G SA ++ + + ANP+A
Sbjct: 243 SNLFGDILSDELAAINGSLGLLSSASLNDKGFGLYEPAGGSAPDIAHLNI-----ANPIA 297
Query: 303 LLLSSAMMLRH-LQFPSFADRLETAVKRVISEEKYRTKDL 341
+LS+A+ML++ + A +E A+ +++ K TKDL
Sbjct: 298 QILSAALMLKYSFKEEQAAQDIENAISLALAQGKM-TKDL 336
>pdb|3UDO|A Chain A, Crystal Structure Of Putative Isopropylamlate
Dehydrogenase From Campylobacter Jejuni
Length = 361
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 94/340 (27%), Positives = 154/340 (45%), Gaps = 42/340 (12%)
Query: 32 VTLIPGDGIGPLVTNAVEQVM-----------EAMHAPIYFEKYEVHGDMKRVPQQVLDS 80
V ++ GDGIGPLV +++ E A I + +G + + L
Sbjct: 9 VAVLAGDGIGPLVXKEALKILTFIAQKYNFSFELNEAKIGGASIDAYG--VALSDETLKL 66
Query: 81 IRKNKVCLKGGLKTPVGGGV--------SSLNVQLRKELDLYAALVNCFNLPGL----PT 128
++ L G + P + +SL + LRK +L+A L C L P
Sbjct: 67 CEQSDAILFGSVGGPKWDNLPIDQRPERASL-LPLRKHFNLFANLRPCKIYESLTHASPL 125
Query: 129 RHQ----NVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNY 184
+++ VDI+ +RE T G Y G + ++ ++ TK ERIA+ AFE A +
Sbjct: 126 KNEIIQKGVDILCVRELTGGIYFG-KQDLGKESAYDTEIYTKKEIERIARIAFESARIR- 183
Query: 185 RKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVT 244
+KKV + KAN++ + L+ E VA Y I VDN Q+V P FDV +
Sbjct: 184 KKKVHLIDKANVLA-SSILWREVVANVAKDYQDINLEYXYVDNAAXQIVKNPSIFDVXLC 242
Query: 245 PNLYGNLVSNTAAGI-AXXXXXXXXXXXXADTAVFE-QGASAGNVGNEKVVEQKKANPVA 302
NL+G+++S+ A I ++E G SA ++ + + ANP+A
Sbjct: 243 SNLFGDILSDELAAINGSLGLLSSASLNDKGFGLYEPAGGSAPDIAHLNI-----ANPIA 297
Query: 303 LLLSSAMMLRH-LQFPSFADRLETAVKRVISEEKYRTKDL 341
+LS+A+ L++ + A +E A+ +++ K TKDL
Sbjct: 298 QILSAALXLKYSFKEEQAAQDIENAISLALAQGK-XTKDL 336
>pdb|2QFV|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFV|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFV|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFV|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFW|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|E Chain E, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|F Chain F, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFX|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|E Chain E, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|F Chain F, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFY|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|E Chain E, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|F Chain F, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
Length = 427
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 77/189 (40%), Gaps = 28/189 (14%)
Query: 193 KANIMKLADGLFLESCREV-ATKYPS------IKYNEIIVDNCCMQLVSKPEQFDVMVTP 245
K I+K DG F + +EV +Y S I Y ++D+ Q++ F +M
Sbjct: 228 KNTILKKYDGRFKDIFQEVYEAQYKSKFEQLGIHYEHRLIDDMVAQMIKSKGGF-IMALK 286
Query: 246 NLYGNLVSNTAAGIAXXXXXXXXXXXXADTAVFEQGASAGNVGNE----KVVEQKKANPV 301
N G++ S+ A D FE A+ G V + E+ N +
Sbjct: 287 NYDGDVQSDIVAQGFGSLGLMTSILVTPDGKTFESEAAHGTVTRHYRKYQKGEETSTNSI 346
Query: 302 ALLLS-SAMMLRHLQFPS------FADRLETAVKRVISEEKYRTKDLGGGC--------- 345
A + + S +L+ + + FA+ LE+A + ++ TKDL C
Sbjct: 347 ASIFAWSRGLLKRGELDNTPALCKFANILESATLNTVQQDGIMTKDLALACGNNERSAYV 406
Query: 346 TTQQIVDAV 354
TT++ +DAV
Sbjct: 407 TTEEFLDAV 415
>pdb|2WSH|A Chain A, Structure Of Bacteriophage T4 Endoii E118a Mutant
pdb|2WSH|B Chain B, Structure Of Bacteriophage T4 Endoii E118a Mutant
pdb|2WSH|C Chain C, Structure Of Bacteriophage T4 Endoii E118a Mutant
pdb|2WSH|D Chain D, Structure Of Bacteriophage T4 Endoii E118a Mutant
Length = 143
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Query: 209 REVATKYPSIKYNEI-IVDNCCMQLVSKPEQFDVM 242
+E+AT+Y IKY E+ + DN ++ +S P +++V+
Sbjct: 9 KEIATEYSFIKYTELELDDNGSIKQLSIPNKYNVI 43
>pdb|3EJ6|A Chain A, Neurospora Crassa Catalase-3 Crystal Structure
pdb|3EJ6|B Chain B, Neurospora Crassa Catalase-3 Crystal Structure
pdb|3EJ6|C Chain C, Neurospora Crassa Catalase-3 Crystal Structure
pdb|3EJ6|D Chain D, Neurospora Crassa Catalase-3 Crystal Structure
Length = 688
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 136 VVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIA 173
+ + E G Y+G + EV+ GV E LKV KF ER A
Sbjct: 646 IGVEEKEAGVYAGAQDEVIKGVEEGLKVF-KFL-ERFA 681
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,664,408
Number of Sequences: 62578
Number of extensions: 374774
Number of successful extensions: 1066
Number of sequences better than 100.0: 65
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 789
Number of HSP's gapped (non-prelim): 74
length of query: 359
length of database: 14,973,337
effective HSP length: 100
effective length of query: 259
effective length of database: 8,715,537
effective search space: 2257324083
effective search space used: 2257324083
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)