Query 018224
Match_columns 359
No_of_seqs 138 out of 1267
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 07:11:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018224.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018224hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0473 LeuB Isocitrate/isopro 100.0 3E-118 6E-123 863.5 33.3 328 28-359 2-346 (348)
2 PLN00123 isocitrate dehydrogen 100.0 2E-116 4E-121 864.1 40.0 349 9-359 10-360 (360)
3 PRK08997 isocitrate dehydrogen 100.0 5E-115 1E-119 849.9 37.6 325 30-358 3-334 (334)
4 KOG0785 Isocitrate dehydrogena 100.0 2E-115 4E-120 826.1 26.7 354 1-358 5-365 (365)
5 PLN00118 isocitrate dehydrogen 100.0 4E-114 8E-119 851.6 37.0 327 28-358 40-372 (372)
6 PRK14025 multifunctional 3-iso 100.0 8E-114 2E-118 840.1 36.6 320 30-358 2-330 (330)
7 TIGR00175 mito_nad_idh isocitr 100.0 2E-112 4E-117 833.2 37.6 329 27-358 1-333 (333)
8 PRK08194 tartrate dehydrogenas 100.0 3E-112 7E-117 835.6 36.1 325 28-358 2-349 (352)
9 TIGR02089 TTC tartrate dehydro 100.0 1E-111 2E-116 832.5 35.7 325 28-358 2-352 (352)
10 PRK09222 isocitrate dehydrogen 100.0 1E-111 3E-116 854.1 36.5 326 28-358 3-341 (482)
11 TIGR02924 ICDH_alpha isocitrat 100.0 3E-111 8E-116 848.3 35.1 323 31-358 2-337 (473)
12 PRK03437 3-isopropylmalate deh 100.0 5E-110 1E-114 818.2 35.8 321 28-358 3-344 (344)
13 PLN02329 3-isopropylmalate deh 100.0 1E-109 2E-114 826.9 34.7 324 28-358 45-401 (409)
14 TIGR00169 leuB 3-isopropylmala 100.0 9E-109 2E-113 810.9 36.3 321 31-358 1-349 (349)
15 PRK06451 isocitrate dehydrogen 100.0 5E-108 1E-112 817.8 35.0 325 28-358 23-408 (412)
16 PRK00772 3-isopropylmalate deh 100.0 1E-107 3E-112 804.7 35.6 323 29-359 2-356 (358)
17 TIGR02088 LEU3_arch isopropylm 100.0 2E-107 5E-112 793.7 35.6 316 32-355 1-322 (322)
18 PRK07006 isocitrate dehydrogen 100.0 3E-107 7E-112 812.9 35.1 325 28-358 19-409 (409)
19 TIGR00183 prok_nadp_idh isocit 100.0 5E-106 1E-110 807.3 34.9 322 32-358 29-416 (416)
20 PRK07362 isocitrate dehydrogen 100.0 6E-106 1E-110 803.0 34.9 323 31-358 30-474 (474)
21 KOG0784 Isocitrate dehydrogena 100.0 3E-105 6E-110 764.7 29.7 346 11-359 24-373 (375)
22 PF00180 Iso_dh: Isocitrate/is 100.0 1E-104 3E-109 784.2 24.6 318 31-354 1-348 (348)
23 PRK08299 isocitrate dehydrogen 100.0 2.5E-97 5E-102 737.0 34.7 318 29-358 7-398 (402)
24 PLN00103 isocitrate dehydrogen 100.0 1.1E-94 2.3E-99 719.6 34.2 320 29-358 9-406 (410)
25 TIGR00127 nadp_idh_euk isocitr 100.0 6.4E-90 1.4E-94 684.5 33.8 322 29-358 6-403 (409)
26 PTZ00435 isocitrate dehydrogen 100.0 1.8E-89 4E-94 681.9 34.1 323 28-358 8-406 (413)
27 PLN03065 isocitrate dehydrogen 100.0 1.5E-87 3.2E-92 675.8 34.7 320 29-359 77-474 (483)
28 COG0538 Icd Isocitrate dehydro 100.0 4.6E-84 1E-88 627.5 30.8 327 28-359 17-407 (407)
29 KOG0786 3-isopropylmalate dehy 100.0 4.9E-83 1.1E-87 592.3 22.1 324 28-357 3-357 (363)
30 PLN00096 isocitrate dehydrogen 100.0 2.1E-72 4.5E-77 553.5 30.7 316 33-358 2-393 (393)
31 KOG1526 NADP-dependent isocitr 100.0 3.9E-40 8.4E-45 312.5 21.9 323 29-358 18-413 (422)
32 PF03971 IDH: Monomeric isocit 96.3 0.12 2.6E-06 54.7 14.9 180 150-335 443-641 (735)
33 PF04166 PdxA: Pyridoxal phosp 96.0 0.0057 1.2E-07 60.0 3.4 136 162-309 150-296 (298)
34 PRK03371 pdxA 4-hydroxythreoni 95.9 0.011 2.3E-07 58.8 5.1 137 162-311 176-323 (326)
35 PRK00232 pdxA 4-hydroxythreoni 95.9 0.011 2.4E-07 58.8 5.1 137 162-312 177-325 (332)
36 PRK03743 pdxA 4-hydroxythreoni 95.9 0.011 2.5E-07 58.8 5.0 137 162-312 177-325 (332)
37 PRK01909 pdxA 4-hydroxythreoni 95.8 0.013 2.8E-07 58.3 5.1 138 162-312 172-321 (329)
38 PRK02746 pdxA 4-hydroxythreoni 95.8 0.013 2.8E-07 58.6 5.0 141 162-312 179-338 (345)
39 TIGR00557 pdxA 4-hydroxythreon 95.7 0.015 3.4E-07 57.6 5.2 135 163-311 170-317 (320)
40 PRK05312 pdxA 4-hydroxythreoni 95.6 0.017 3.6E-07 57.7 5.1 137 162-312 181-330 (336)
41 PRK03946 pdxA 4-hydroxythreoni 95.5 0.019 4.1E-07 56.7 5.1 135 162-312 157-302 (307)
42 TIGR00178 monomer_idh isocitra 95.3 0.25 5.4E-06 52.5 12.5 176 151-335 448-645 (741)
43 COG1995 PdxA Pyridoxal phospha 93.8 0.061 1.3E-06 53.3 3.9 65 239-311 259-323 (332)
44 COG2838 Icd Monomeric isocitra 92.1 2.3 5E-05 44.6 12.2 166 161-335 460-647 (744)
45 PTZ00435 isocitrate dehydrogen 63.7 9.7 0.00021 39.3 4.5 24 132-155 127-150 (413)
46 PF12847 Methyltransf_18: Meth 58.5 30 0.00065 27.4 5.7 62 174-246 14-78 (112)
47 PF03602 Cons_hypoth95: Conser 57.2 39 0.00085 30.7 6.9 66 175-245 56-121 (183)
48 cd00293 USP_Like Usp: Universa 54.8 1E+02 0.0022 24.1 8.7 79 166-246 9-101 (130)
49 cd06308 PBP1_sensor_kinase_lik 52.5 1E+02 0.0022 28.2 9.0 78 166-246 105-190 (270)
50 TIGR00651 pta phosphate acetyl 49.7 1E+02 0.0022 30.4 8.9 98 165-262 157-269 (303)
51 PRK12862 malic enzyme; Reviewe 48.2 1.4E+02 0.0031 33.3 10.6 100 162-261 607-720 (763)
52 PRK11041 DNA-binding transcrip 47.2 88 0.0019 29.3 7.9 74 16-92 22-100 (309)
53 TIGR02069 cyanophycinase cyano 47.2 84 0.0018 30.0 7.7 61 29-91 28-90 (250)
54 PRK03743 pdxA 4-hydroxythreoni 46.6 17 0.00038 36.4 3.0 22 28-49 2-25 (332)
55 TIGR00853 pts-lac PTS system, 45.2 78 0.0017 25.6 6.2 57 28-92 2-59 (95)
56 cd06322 PBP1_ABC_sugar_binding 44.9 1.8E+02 0.0039 26.4 9.4 79 166-248 104-189 (267)
57 PRK07232 bifunctional malic en 43.8 1.6E+02 0.0035 32.9 10.1 100 165-264 602-715 (752)
58 cd06320 PBP1_allose_binding Pe 43.2 1.8E+02 0.0038 26.6 9.1 61 184-246 121-190 (275)
59 cd06323 PBP1_ribose_binding Pe 41.6 1.6E+02 0.0035 26.5 8.5 80 165-247 103-190 (268)
60 cd01988 Na_H_Antiporter_C The 41.2 1.6E+02 0.0034 23.6 7.6 28 167-195 10-37 (132)
61 TIGR02356 adenyl_thiF thiazole 39.9 2.7E+02 0.0057 25.4 9.6 65 175-245 36-118 (202)
62 PRK12475 thiamine/molybdopteri 39.8 1.7E+02 0.0037 29.1 8.9 76 175-256 39-137 (338)
63 TIGR00127 nadp_idh_euk isocitr 39.8 16 0.00036 37.6 1.7 23 132-154 124-146 (409)
64 COG1995 PdxA Pyridoxal phospha 39.3 35 0.00076 34.2 3.8 17 28-44 2-20 (332)
65 cd01545 PBP1_SalR Ligand-bindi 39.0 2E+02 0.0043 26.0 8.7 52 39-92 12-65 (270)
66 cd06270 PBP1_GalS_like Ligand 38.9 1.7E+02 0.0038 26.5 8.3 22 40-61 13-34 (268)
67 PRK00232 pdxA 4-hydroxythreoni 38.4 29 0.00063 34.8 3.1 21 29-49 4-26 (332)
68 cd06294 PBP1_ycjW_transcriptio 38.3 2.1E+02 0.0046 25.8 8.8 74 172-246 109-191 (270)
69 PRK01909 pdxA 4-hydroxythreoni 38.3 31 0.00068 34.6 3.3 21 29-49 5-27 (329)
70 PLN03065 isocitrate dehydrogen 37.5 20 0.00044 37.7 1.9 37 132-170 195-232 (483)
71 PF00532 Peripla_BP_1: Peripla 35.1 1.4E+02 0.003 28.4 7.2 71 173-246 106-188 (279)
72 cd06309 PBP1_YtfQ_like Peripla 34.9 2.3E+02 0.0049 25.9 8.4 75 172-248 109-195 (273)
73 cd06313 PBP1_ABC_sugar_binding 34.7 3.1E+02 0.0068 25.2 9.4 77 166-246 106-191 (272)
74 PF00731 AIRC: AIR carboxylase 34.5 1.3E+02 0.0028 26.8 6.3 57 31-91 2-63 (150)
75 cd06305 PBP1_methylthioribose_ 34.4 2.5E+02 0.0055 25.4 8.6 77 166-246 103-191 (273)
76 cd07186 CofD_like LPPG:FO 2-ph 34.3 1.5E+02 0.0033 29.5 7.3 104 73-177 173-302 (303)
77 cd06280 PBP1_LacI_like_4 Ligan 33.0 1.6E+02 0.0034 26.8 7.0 74 171-247 101-181 (263)
78 PRK02746 pdxA 4-hydroxythreoni 33.0 45 0.00098 33.7 3.5 21 29-49 9-31 (345)
79 PRK09653 eutD phosphotransacet 32.2 2.6E+02 0.0057 27.6 8.8 98 165-262 173-284 (324)
80 PRK12861 malic enzyme; Reviewe 32.2 2.6E+02 0.0057 31.3 9.5 98 165-262 611-722 (764)
81 cd06287 PBP1_LacI_like_8 Ligan 31.8 3E+02 0.0065 25.5 8.8 73 172-246 105-186 (269)
82 cd06288 PBP1_sucrose_transcrip 31.7 2.6E+02 0.0056 25.2 8.2 74 171-246 102-185 (269)
83 COG0041 PurE Phosphoribosylcar 31.6 1.7E+02 0.0037 26.4 6.5 59 31-93 4-67 (162)
84 cd06311 PBP1_ABC_sugar_binding 31.4 2.8E+02 0.0061 25.3 8.5 59 184-246 126-193 (274)
85 cd01537 PBP1_Repressors_Sugar_ 31.1 3.1E+02 0.0067 24.2 8.5 75 172-247 105-187 (264)
86 PRK10499 PTS system N,N'-diace 30.7 1.8E+02 0.0039 24.0 6.3 56 29-92 3-59 (106)
87 cd06273 PBP1_GntR_like_1 This 30.5 2.8E+02 0.0061 25.0 8.2 24 38-61 11-34 (268)
88 PRK05312 pdxA 4-hydroxythreoni 30.4 44 0.00096 33.6 3.0 20 30-49 4-25 (336)
89 cd01574 PBP1_LacI Ligand-bindi 30.3 3.4E+02 0.0073 24.4 8.7 50 41-92 14-65 (264)
90 PRK15490 Vi polysaccharide bio 30.0 1.8E+02 0.0039 31.5 7.6 106 157-265 164-307 (578)
91 cd06300 PBP1_ABC_sugar_binding 29.9 4E+02 0.0087 24.2 9.2 61 31-92 1-69 (272)
92 cd06063 H2MP_Cyano-H2up This g 29.6 78 0.0017 27.4 4.1 47 38-92 14-61 (146)
93 PRK07742 phosphate butyryltran 29.4 5.5E+02 0.012 25.1 10.4 108 165-274 148-271 (299)
94 TIGR02469 CbiT precorrin-6Y C5 29.3 2.1E+02 0.0045 22.6 6.4 66 175-250 33-100 (124)
95 KOG1014 17 beta-hydroxysteroid 29.1 94 0.002 31.0 4.9 43 175-226 65-107 (312)
96 cd06271 PBP1_AglR_RafR_like Li 28.8 2.7E+02 0.0058 25.0 7.8 26 38-63 15-40 (268)
97 cd06272 PBP1_hexuronate_repres 28.4 2.7E+02 0.0059 25.1 7.7 20 228-247 162-181 (261)
98 KOG0189 Phosphoadenosine phosp 28.3 1.4E+02 0.003 28.5 5.5 62 177-242 62-125 (261)
99 PRK03946 pdxA 4-hydroxythreoni 28.0 43 0.00092 33.3 2.3 19 30-48 2-22 (307)
100 PF07820 TraC: TraC-like prote 27.7 77 0.0017 26.1 3.3 38 166-216 23-60 (92)
101 cd06303 PBP1_LuxPQ_Quorum_Sens 27.6 4.6E+02 0.01 24.1 9.3 77 166-246 114-198 (280)
102 PRK03371 pdxA 4-hydroxythreoni 27.4 47 0.001 33.3 2.5 20 30-49 3-24 (326)
103 cd01536 PBP1_ABC_sugar_binding 27.2 3.8E+02 0.0082 23.8 8.4 78 166-246 104-189 (267)
104 cd05564 PTS_IIB_chitobiose_lic 27.1 1.8E+02 0.0039 23.4 5.5 54 31-92 1-55 (96)
105 cd06062 H2MP_MemB-H2up Endopep 26.6 1.1E+02 0.0024 26.4 4.5 48 38-92 14-62 (146)
106 cd06290 PBP1_LacI_like_9 Ligan 26.5 2E+02 0.0044 26.0 6.5 19 228-246 166-184 (265)
107 PRK11175 universal stress prot 26.4 4.7E+02 0.01 24.6 9.2 24 169-192 172-195 (305)
108 cd00518 H2MP Hydrogenase speci 26.1 81 0.0018 26.9 3.5 47 38-92 13-60 (139)
109 PRK10310 PTS system galactitol 25.4 1.6E+02 0.0035 23.6 5.0 55 29-91 2-58 (94)
110 cd06310 PBP1_ABC_sugar_binding 25.4 5.1E+02 0.011 23.4 9.5 32 31-62 1-35 (273)
111 cd02975 PfPDO_like_N Pyrococcu 25.0 2.6E+02 0.0057 22.8 6.3 56 169-227 7-63 (113)
112 cd06278 PBP1_LacI_like_2 Ligan 24.4 4E+02 0.0088 23.8 8.1 75 172-247 102-183 (266)
113 PRK06078 pyrimidine-nucleoside 24.0 2.6E+02 0.0056 29.2 7.2 100 74-194 136-239 (434)
114 TIGR01501 MthylAspMutase methy 23.9 2.2E+02 0.0049 24.7 5.9 52 29-89 3-56 (134)
115 PF08740 BCS1_N: BCS1 N termin 23.5 2.3E+02 0.005 25.1 6.1 78 117-195 87-167 (187)
116 PRK10466 hybD hydrogenase 2 ma 23.4 1.4E+02 0.003 26.4 4.6 48 38-92 16-64 (164)
117 PRK07688 thiamine/molybdopteri 23.3 6E+02 0.013 25.3 9.6 79 175-257 39-138 (339)
118 TIGR01162 purE phosphoribosyla 23.0 2.4E+02 0.0052 25.4 5.9 56 32-91 1-61 (156)
119 PF03469 XH: XH domain; Inter 22.5 1.8E+02 0.0038 25.5 4.9 41 318-358 73-125 (132)
120 TIGR00072 hydrog_prot hydrogen 22.4 1.4E+02 0.0031 25.6 4.4 48 38-92 13-61 (145)
121 PRK00107 gidB 16S rRNA methylt 22.3 2.9E+02 0.0064 25.0 6.6 60 175-246 59-120 (187)
122 cd06212 monooxygenase_like The 22.2 4.6E+02 0.0099 23.7 8.0 34 185-220 131-164 (232)
123 cd06284 PBP1_LacI_like_6 Ligan 22.0 5.7E+02 0.012 22.8 9.0 73 173-246 103-184 (267)
124 cd01544 PBP1_GalR Ligand-bindi 21.7 4.3E+02 0.0093 24.1 7.8 90 173-265 100-203 (270)
125 cd06325 PBP1_ABC_uncharacteriz 21.7 4.4E+02 0.0095 23.9 7.8 28 40-67 12-43 (281)
126 cd06321 PBP1_ABC_sugar_binding 21.6 6.1E+02 0.013 22.9 9.0 79 165-247 103-190 (271)
127 cd06289 PBP1_MalI_like Ligand- 21.4 5.5E+02 0.012 23.0 8.3 75 172-247 104-187 (268)
128 cd06267 PBP1_LacI_sugar_bindin 21.3 5.7E+02 0.012 22.5 8.8 73 173-246 104-185 (264)
129 PRK09701 D-allose transporter 21.3 6.6E+02 0.014 23.8 9.2 62 30-92 25-91 (311)
130 PRK10727 DNA-binding transcrip 21.2 4.6E+02 0.0099 25.1 8.1 43 17-59 47-92 (343)
131 COG0655 WrbA Multimeric flavod 21.2 2.5E+02 0.0055 25.5 6.0 78 31-113 5-100 (207)
132 cd06293 PBP1_LacI_like_11 Liga 21.1 5.2E+02 0.011 23.3 8.2 19 228-246 167-185 (269)
133 PRK08051 fre FMN reductase; Va 20.9 5.7E+02 0.012 23.4 8.4 36 185-222 130-165 (232)
134 cd06312 PBP1_ABC_sugar_binding 20.9 5.4E+02 0.012 23.4 8.3 76 165-246 108-191 (271)
135 PRK09590 celB cellobiose phosp 20.7 2.5E+02 0.0055 23.2 5.3 57 30-92 2-59 (104)
136 cd01543 PBP1_XylR Ligand-bindi 20.6 6E+02 0.013 23.0 8.4 71 174-246 98-179 (265)
137 PF01547 SBP_bac_1: Bacterial 20.4 2.1E+02 0.0046 26.2 5.4 42 203-244 9-57 (315)
138 PF00175 NAD_binding_1: Oxidor 20.4 4.2E+02 0.009 20.6 7.1 69 172-245 14-99 (109)
139 PF00582 Usp: Universal stress 20.4 1.5E+02 0.0033 23.2 3.9 26 166-192 12-37 (140)
140 TIGR00557 pdxA 4-hydroxythreon 20.3 74 0.0016 31.8 2.4 19 31-49 1-21 (320)
141 cd06319 PBP1_ABC_sugar_binding 20.1 6.5E+02 0.014 22.7 9.2 82 164-246 102-193 (277)
142 KOG3812 L-type voltage-depende 20.0 6.7E+02 0.014 25.7 8.8 38 218-255 308-347 (475)
No 1
>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.6e-118 Score=863.54 Aligned_cols=328 Identities=45% Similarity=0.680 Sum_probs=312.3
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHHHHHcC---CCeeEEEEEecCc-cc----CCcHHHHHHHHhcCceeeccccCC-CC-
Q 018224 28 SPRAVTLIPGDGIGPLVTNAVEQVMEAMH---APIYFEKYEVHGD-MK----RVPQQVLDSIRKNKVCLKGGLKTP-VG- 97 (359)
Q Consensus 28 ~~~~I~vi~GDGIGpEV~~~a~~vl~~~~---~~ie~~~~~~g~~-~~----~lp~et~~~~~~~da~l~G~~~~p-~~- 97 (359)
++|+|++|||||||||||+++++||+++. ++++|+++++|++ ++ ++|+++++.|+++|++||||+++| +.
T Consensus 2 ~~~~IavipGDGIGpEv~~~a~kVl~a~~~~~~~~e~~~~~~G~~~~~~~G~~lpeetl~~~~~~DaiL~Gavg~P~~~~ 81 (348)
T COG0473 2 KTYTIAVIPGDGIGPEVMAAALKVLEAAAEFGLDFEFEEAEVGGEAYDKHGEPLPEETLESLKKADAILFGAVGGPKWDP 81 (348)
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCceEEEEehhhHHHHHHcCCCCCHHHHHHHHhCCEEEEcccCCCCCCC
Confidence 57999999999999999999999999986 8999999999987 53 899999999999999999999999 43
Q ss_pred --CCcccchHHHHhhcCcEEEEEEeecCCCCCCCc-ccccEEEEecCCcceEecccee-eeCC-EEEEEEeecHHHHHHH
Q 018224 98 --GGVSSLNVQLRKELDLYAALVNCFNLPGLPTRH-QNVDIVVIRENTEGEYSGLEHE-VVPG-VVESLKVITKFCSERI 172 (359)
Q Consensus 98 --~~~~s~~~~LR~~ldlyanvRP~~~~pg~~~~~-~~iDivivREnteG~Y~g~~~~-~~~~-va~~~~~~Tr~~~eRi 172 (359)
.++++.+++|||+||||||+||+|++||+++++ +++|+|||||||||+|+|.+++ ..++ +++++++|||.++|||
T Consensus 82 ~~~~~~~~ll~lRk~l~lyANlRP~k~~~~~k~~~~~~~D~viVREnTeG~Y~G~~~~~~~~~eva~~~~~~Tr~~~eRI 161 (348)
T COG0473 82 LPRPERGLLLALRKELDLYANLRPAKSLPGLKSPLVKGVDIVIVRENTEGLYFGEEGRILGGGEVAIDTKVITRKGSERI 161 (348)
T ss_pred CCCcccchHHHHHHhcCceeeeeecccCCCCCCccCCCccEEEEeeCCCccccCCCccccCCCeEEEEEEeccHHHHHHH
Confidence 367789999999999999999999999999988 6899999999999999999984 3344 8999999999999999
Q ss_pred HHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHhhCCceeeceeeHhHHHHHHHhCCCCccEEEeCCcchhhH
Q 018224 173 AKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLV 252 (359)
Q Consensus 173 ar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~eypdI~~~~~~vD~~~~~Lv~~P~~fdViv~~NlfGDIL 252 (359)
+|+|||+|++|++|+||+|||+|||+++++||+++|+||+++||||+++|+|||+++||||++|++||||||+|||||||
T Consensus 162 ~r~AFe~A~~R~~kkvTsv~KaNVl~~s~~lwrev~~eva~~yPdv~~~~~~VD~aam~lV~~P~~FDViVt~NlFGDIL 241 (348)
T COG0473 162 ARFAFELARKRGRKKVTSVHKANVLKLSDGLWREVVEEVAKEYPDVELDHMYVDAAAMQLVRNPEQFDVIVTSNLFGDIL 241 (348)
T ss_pred HHHHHHHHHhhCCCceEEEehhhhhhhhhHHHHHHHHHHhhcCCCcchhHHhHHHHHHHHhhCccccCEEEEccchhHHH
Confidence 99999999999889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhcCCCCccceeeeCCC--cceEeccccCCCCCcccccccccCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 018224 253 SNTAAGIAGGTGVMPGGNVGAD--TAVFEQGASAGNVGNEKVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRV 330 (359)
Q Consensus 253 SDlaa~l~GglGl~psanig~~--~a~FEp~~~~~HGsApdiaGk~~ANP~a~Ils~ammL~~lg~~~~A~~i~~Av~~~ 330 (359)
||+||+++|||||+||||+|++ ++||||+ |||||||||||+|||+|+|||++|||+|+|..++|++|++||+++
T Consensus 242 SD~aa~l~GslGl~PSAnig~~~~~~lfEPv----HGSAPDIAGkgiANPiA~IlS~aMML~~~g~~~~A~~Ie~Av~~v 317 (348)
T COG0473 242 SDEAAALTGSLGLAPSANLGDERGPALFEPV----HGSAPDIAGKGIANPIATILSAAMMLRHLGEKEAADAIENAVEKV 317 (348)
T ss_pred HhHHHHhcCccccCccCccCCCCCCceeecC----CCCcccccCCCccChHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 9999999999999999999997 9999999 999999999999999999999999999999999999999999999
Q ss_pred HHcCcccCCCCCCCCcHHHHHHHHHHhcC
Q 018224 331 ISEEKYRTKDLGGGCTTQQIVDAVIANLD 359 (359)
Q Consensus 331 l~~g~~~T~Dlgg~~~T~e~~~av~~~l~ 359 (359)
++++.++|+||||+++|.||+++|+++|+
T Consensus 318 l~~~g~~T~Dlgg~~~T~e~~d~I~~~l~ 346 (348)
T COG0473 318 LAEGGIRTPDLGGNATTSEVGDAIAKALA 346 (348)
T ss_pred HHcCCCCCcccCCCccHHHHHHHHHHHHh
Confidence 99643799999999999999999999873
No 2
>PLN00123 isocitrate dehydrogenase (NAD+)
Probab=100.00 E-value=1.9e-116 Score=864.09 Aligned_cols=349 Identities=91% Similarity=1.351 Sum_probs=332.2
Q ss_pred HHHhhhhcccccCCCCCCCCcceEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEecCcccCCcHHHHHHHHhcCcee
Q 018224 9 LKSLIQTRSVTYMPRPGDGSPRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIRKNKVCL 88 (359)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~I~vi~GDGIGpEV~~~a~~vl~~~~~~ie~~~~~~g~~~~~lp~et~~~~~~~da~l 88 (359)
|-+-+|.+|.+..|.++++++++|++|||||||||||+++++||++++++++|+++++|++..++|++++++|+++|++|
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~I~vipGDGIGpEV~~~a~~vl~a~~~~i~~~~~~~G~~~~~lp~~~l~~~~~~da~L 89 (360)
T PLN00123 10 LGSKAQRRSVTYMPRPGDGAPRAVTLIPGDGIGPLVTGAVEQVMEAMHAPVYFERYEVHGDMKKVPEEVLESIRRNKVCL 89 (360)
T ss_pred hhhhhccCCcccCCcccCCCceEEEEECCCCccHHHHHHHHHHHHhCCCceEEEEEccCCCCccCCHHHHHHHHHCCEEE
Confidence 44555666777788889999999999999999999999999999999999999999998875589999999999999999
Q ss_pred eccccCCCCCCcccchHHHHhhcCcEEEEEEeecCCCCCCCcccccEEEEecCCcceEeccceeeeCCEEEEEEeecHHH
Q 018224 89 KGGLKTPVGGGVSSLNVQLRKELDLYAALVNCFNLPGLPTRHQNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFC 168 (359)
Q Consensus 89 ~G~~~~p~~~~~~s~~~~LR~~ldlyanvRP~~~~pg~~~~~~~iDivivREnteG~Y~g~~~~~~~~va~~~~~~Tr~~ 168 (359)
|||+++|...+++++++.||+.||||+|+||||++||++++++++|+|||||||||+|+|.|++..+++++++++|||++
T Consensus 90 ~Gavg~p~~~~~~s~~l~LR~~ldLyaNvRP~k~~pg~~~~~~~iD~viVREnteG~Y~g~~~~~~~g~~~~~~v~Tr~~ 169 (360)
T PLN00123 90 KGGLATPVGGGVSSLNVQLRKELDLFASLVNCFNLPGLPTRHENVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFC 169 (360)
T ss_pred EccccCCCCcCccchHHHHHHHcCCEEEEEEeecCCCCCCccCCCCEEEEEeCCCceeccceeecCCCceEEEEEecHHH
Confidence 99999996556778899999999999999999999999999999999999999999999999887788999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHhhCCceeeceeeHhHHHHHHHhCCCCccEEEeCCcc
Q 018224 169 SERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLY 248 (359)
Q Consensus 169 ~eRiar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~eypdI~~~~~~vD~~~~~Lv~~P~~fdViv~~Nlf 248 (359)
+|||+|+||+||++|+||+||++||+|||+.+||||+++|+||+++||||+++|++||++|||||++|++||||||+|||
T Consensus 170 ~eRIar~AF~~A~~r~rkkVt~v~KaNvl~~t~glf~~~~~eva~eyPdV~~~~~~VDa~~~~Lv~~P~~fDViVt~Nlf 249 (360)
T PLN00123 170 SERIAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVAKKYPGIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLY 249 (360)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEECCccccchhhHHHHHHHHHHhhCCCceEeeeeHHHHHHHHhhCcccCcEEEEcCcc
Confidence 99999999999999888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHhhhhhcCCCCccceeeeCCCcceEeccccCCCCCc--ccccccccCChhHHHHHHHHHHhhcCCHHHHHHHHHH
Q 018224 249 GNLVSNTAAGIAGGTGVMPGGNVGADTAVFEQGASAGNVGN--EKVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETA 326 (359)
Q Consensus 249 GDILSDlaa~l~GglGl~psanig~~~a~FEp~~~~~HGsA--pdiaGk~~ANP~a~Ils~ammL~~lg~~~~A~~i~~A 326 (359)
||||||++|+++||+||+||+|||++++||||++. |||| |||||||+|||+|+|||++|||+|||++++|++|++|
T Consensus 250 GDILSDlaa~l~GglGl~pSanig~~~a~FEpvh~--hGSA~~PdIAGk~iANP~a~IlS~amML~~lG~~~~A~~I~~A 327 (360)
T PLN00123 250 GNLVANTAAGIAGGTGVMPGGNVGADHAVFEQGAS--AGNVGNEKLVEQKKANPVALLLSSAMMLRHLQFPSFADRLETA 327 (360)
T ss_pred cchhhhHHHHhcCCcCccceEeeCCCceEEEeccc--CCCcCCccccCCCccChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 99999999999999999999999999999999844 6999 9999999999999999999999999999999999999
Q ss_pred HHHHHHcCcccCCCCCCCCcHHHHHHHHHHhcC
Q 018224 327 VKRVISEEKYRTKDLGGGCTTQQIVDAVIANLD 359 (359)
Q Consensus 327 v~~~l~~g~~~T~Dlgg~~~T~e~~~av~~~l~ 359 (359)
|++++++|+++|+||||++||+||+++|+++|.
T Consensus 328 V~~~l~~G~~~T~DlGG~~sT~e~~~ai~~~l~ 360 (360)
T PLN00123 328 VKRVIAEGKYRTKDLGGSSTTQEVVDAVIANLD 360 (360)
T ss_pred HHHHHHcCCccCcccCCCcCHHHHHHHHHHhhC
Confidence 999999997789999999999999999999873
No 3
>PRK08997 isocitrate dehydrogenase; Provisional
Probab=100.00 E-value=4.7e-115 Score=849.85 Aligned_cols=325 Identities=45% Similarity=0.741 Sum_probs=312.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEecCc-cc----CCcHHHHHHHHhcCceeeccccCCCCCCcccch
Q 018224 30 RAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGD-MK----RVPQQVLDSIRKNKVCLKGGLKTPVGGGVSSLN 104 (359)
Q Consensus 30 ~~I~vi~GDGIGpEV~~~a~~vl~~~~~~ie~~~~~~g~~-~~----~lp~et~~~~~~~da~l~G~~~~p~~~~~~s~~ 104 (359)
++|++|||||||||||+++++||++++++++|+++++|.+ ++ ++|++++++|+++|++||||+++|.+++++|++
T Consensus 3 ~~I~vipGDGIGpEV~~~a~~vl~~~~~~~~~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~L~Gavg~p~~~~~~~~~ 82 (334)
T PRK08997 3 QTITVIPGDGIGPSIIDATLKILDKLGCDFEYEFADAGLTALEKHGELLPQRTLDLIEKNKIALKGPLTTPVGEGFTSIN 82 (334)
T ss_pred cEEEEECCCcccHHHHHHHHHHHHhcCCCeEEEEEcCCHHHHHhhCCCCCHHHHHHHHHCCEEEECcccCCCCcCccchH
Confidence 7899999999999999999999999999999999999986 43 899999999999999999999999666678899
Q ss_pred HHHHhhcCcEEEEEEeecCCCCCCCcccccEEEEecCCcceEeccceeeeC--CEEEEEEeecHHHHHHHHHHHHHHHHh
Q 018224 105 VQLRKELDLYAALVNCFNLPGLPTRHQNVDIVVIRENTEGEYSGLEHEVVP--GVVESLKVITKFCSERIAKYAFEYAYL 182 (359)
Q Consensus 105 ~~LR~~ldlyanvRP~~~~pg~~~~~~~iDivivREnteG~Y~g~~~~~~~--~va~~~~~~Tr~~~eRiar~AFe~A~~ 182 (359)
+.||++||||+|+||||++||+++|++++|+|||||||||+|+|.+++..+ .+++++++|||+++|||+|+||+||++
T Consensus 83 ~~LR~~ldlyanvRP~k~~~g~~~~~~~iD~vivREnteG~Y~g~~~~~~~~~~~a~~~~~~Tr~~~eRi~r~Af~~A~~ 162 (334)
T PRK08997 83 VTLRKKFDLYANVRPVLSFPGTKARYDNIDIITVRENTEGMYSGEGQTVSEDGETAEATSIITRKGAERIVRFAYELARK 162 (334)
T ss_pred HHHHHHcCCeEEEeecccCCCCCCccCCcCEEEEEeccCceecCccceecCCCceEEEEEEeeHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999875433 389999999999999999999999999
Q ss_pred cCCCcEEEEEcCCchhhchHHHHHHHHHHHhhCCceeeceeeHhHHHHHHHhCCCCccEEEeCCcchhhHHHhhhhhcCC
Q 018224 183 NYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGG 262 (359)
Q Consensus 183 r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~eypdI~~~~~~vD~~~~~Lv~~P~~fdViv~~NlfGDILSDlaa~l~Gg 262 (359)
|++++||++||+|||+.|||+|+++|+||+++||+|+++|++||+++||||++|++||||||+|||||||||++|+++||
T Consensus 163 r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~yP~V~~~~~~vDa~~~~lv~~P~~fdVivt~NlfGDILSDlaa~l~Gg 242 (334)
T PRK08997 163 EGRKKVTAVHKANIMKSTSGLFLKVAREVALRYPDIEFEEMIVDATCMQLVMNPEQFDVIVTTNLFGDILSDLCAGLVGG 242 (334)
T ss_pred cCCCeEEEEeCCCcchhhhHHHHHHHHHHHhhCCCeEEEeeeHHHHHHHHhhCcccCcEEEEcCcccchhhHHHHHhcCC
Confidence 98889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccceeeeCCCcceEeccccCCCCCcccccccccCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHcCcccCCCCC
Q 018224 263 TGVMPGGNVGADTAVFEQGASAGNVGNEKVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEEKYRTKDLG 342 (359)
Q Consensus 263 lGl~psanig~~~a~FEp~~~~~HGsApdiaGk~~ANP~a~Ils~ammL~~lg~~~~A~~i~~Av~~~l~~g~~~T~Dlg 342 (359)
+||+||+|+|++++||||+ |||||||||||+|||+|+|||++|||+|||++++|++|++||++++++|+.+|+|||
T Consensus 243 lGl~psanig~~~a~FEp~----HGSAPdIAGk~iANP~a~IlS~amML~~lG~~~~A~~i~~AV~~vl~~G~~~T~DlG 318 (334)
T PRK08997 243 LGMAPGANIGRDAAIFEAV----HGSAPDIAGKNLANPTSVILAAIQMLEYLGMPDKAERIRKAIVAVIEAGDRTTRDLG 318 (334)
T ss_pred CCcCcceeECCCceEEECC----CCchhhhCCCCccCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHcCCccCcccC
Confidence 9999999999999999999 999999999999999999999999999999999999999999999999976899999
Q ss_pred CCCcHHHHHHHHHHhc
Q 018224 343 GGCTTQQIVDAVIANL 358 (359)
Q Consensus 343 g~~~T~e~~~av~~~l 358 (359)
|++||+||+++|+++|
T Consensus 319 G~a~T~e~~~av~~~l 334 (334)
T PRK08997 319 GTHGTTDFTQAVIDRL 334 (334)
T ss_pred CCcCHHHHHHHHHhhC
Confidence 9999999999999876
No 4
>KOG0785 consensus Isocitrate dehydrogenase, alpha subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-115 Score=826.06 Aligned_cols=354 Identities=49% Similarity=0.779 Sum_probs=335.3
Q ss_pred CCcCchhhHHHhhhhc-ccccCCCCCC-CCcceEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEecCcc---c--CC
Q 018224 1 MSRRSLPFLKSLIQTR-SVTYMPRPGD-GSPRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDM---K--RV 73 (359)
Q Consensus 1 ~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~I~vi~GDGIGpEV~~~a~~vl~~~~~~ie~~~~~~g~~~---~--~l 73 (359)
|||++..+|.+++... +-+......+ .++++|++||||||||||++++++|++++.+||+|++.+++..+ . .+
T Consensus 5 ~~r~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~vtLIpGDGIGpEi~~av~kvf~aak~pIewd~~dv~~~~~~~~~~~i 84 (365)
T KOG0785|consen 5 FFRSVSRRLGAFRGKDQPPQSARAFNSATKTITVTLIPGDGIGPEISPAVKKVFEAAKVPIEWDFIDVTPIKGPFGGKAI 84 (365)
T ss_pred HHHHHHHHHHhhhcCCCCccccccccCCCCceEEEEecCCCCCHHHHHHHHHHHHhcCCCcceeeeeccccccCCCCccC
Confidence 5788888888887653 2222232222 24689999999999999999999999999999999999987652 1 79
Q ss_pred cHHHHHHHHhcCceeeccccCCCCCCcccchHHHHhhcCcEEEEEEeecCCCCCCCcccccEEEEecCCcceEeccceee
Q 018224 74 PQQVLDSIRKNKVCLKGGLKTPVGGGVSSLNVQLRKELDLYAALVNCFNLPGLPTRHQNVDIVVIRENTEGEYSGLEHEV 153 (359)
Q Consensus 74 p~et~~~~~~~da~l~G~~~~p~~~~~~s~~~~LR~~ldlyanvRP~~~~pg~~~~~~~iDivivREnteG~Y~g~~~~~ 153 (359)
|++++++++++.+.||||+.+|..++++|+|++|||+|+||||||||++++|.++|++++|+|+|||||||+|+|+||+.
T Consensus 85 p~~~~esl~~nkvgLkGp~~tPi~kgh~S~nl~LRK~f~LyANVRPc~SieG~Kt~Y~~vD~V~IRENTEgeYsgiEh~v 164 (365)
T KOG0785|consen 85 PDEAVESLRKNKVGLKGPVATPIGKGHRSLNLALRKEFGLYANVRPCKSIEGYKTPYDDVDLVIIRENTEGEYSGIEHQV 164 (365)
T ss_pred CHHHHHHHHhhcccccCcccCccccccccHHHHHHHHhchhccceecccccCCcCCCCCceEEEEecCCccccccceeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCEEEEEEeecHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHhhCCceeeceeeHhHHHHHHH
Q 018224 154 VPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLV 233 (359)
Q Consensus 154 ~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~eypdI~~~~~~vD~~~~~Lv 233 (359)
.+||++++++||+.+++||++|||+||++++|++||++||+|||+.+||||+++|+|++++||||.++++++|++|++|+
T Consensus 165 vpGVvqsiK~IT~~AS~Ria~~AF~yAr~~~R~~vtvvHKaNImr~tDGLFle~cre~a~~y~dI~~eE~~lDt~~l~lv 244 (365)
T KOG0785|consen 165 VPGVVQSIKLITEAASRRIAEYAFEYARQNGRKRVTVVHKANIMRMTDGLFLECCREVAKKYPDIKFEEQYLDTCCLKLV 244 (365)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEEehhhhhhhcchHHHHHHHHHhhhCCccchhHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCccEEEeCCcchhhHHHhhhhhcCCCCccceeeeCCCcceEeccccCCCCCcccccccccCChhHHHHHHHHHHhh
Q 018224 234 SKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGGNVGADTAVFEQGASAGNVGNEKVVEQKKANPVALLLSSAMMLRH 313 (359)
Q Consensus 234 ~~P~~fdViv~~NlfGDILSDlaa~l~GglGl~psanig~~~a~FEp~~~~~HGsApdiaGk~~ANP~a~Ils~ammL~~ 313 (359)
++|..|||+|+||||||||||+||+|+||||++||+|||+..++|||+ |||||||||||+|||+|.+||++|||+|
T Consensus 245 ~~P~~~DVlV~PNLYGDIlSD~~agLvGgLGltPS~NiG~g~~~~e~v----HGsAPDIAGkdlANPtAlllS~vmMLrh 320 (365)
T KOG0785|consen 245 RNPSCFDVLVMPNLYGDILSDLCAGLVGGLGLTPSANIGDGIVIFEAV----HGSAPDIAGKDLANPTALLLSAVMMLRH 320 (365)
T ss_pred cCchhceEEeccchhHHHHHHHHHHhccCcccCCCcccCCCeeeeecc----cCCCcccccCCcCCcHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999889999999 9999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHcCcccCCCCCCCCcHHHHHHHHHHhc
Q 018224 314 LQFPSFADRLETAVKRVISEEKYRTKDLGGGCTTQQIVDAVIANL 358 (359)
Q Consensus 314 lg~~~~A~~i~~Av~~~l~~g~~~T~Dlgg~~~T~e~~~av~~~l 358 (359)
+|++++|++|++||.+++.+|+++|+||||+++|+||+++|+++|
T Consensus 321 m~l~~~A~~I~~Av~~ti~eg~~rT~DLGGka~~seft~aVc~~l 365 (365)
T KOG0785|consen 321 MGLNDQADQIESAVFKTIAEGKIRTPDLGGKATTSEFTDAVCDRL 365 (365)
T ss_pred cCchhHHHHHHHHHHHHHhccCccCcccCCCccchHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999986
No 5
>PLN00118 isocitrate dehydrogenase (NAD+)
Probab=100.00 E-value=3.9e-114 Score=851.65 Aligned_cols=327 Identities=52% Similarity=0.849 Sum_probs=316.5
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEecCc-cc----CCcHHHHHHHHhcCceeeccccCCCCCCccc
Q 018224 28 SPRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGD-MK----RVPQQVLDSIRKNKVCLKGGLKTPVGGGVSS 102 (359)
Q Consensus 28 ~~~~I~vi~GDGIGpEV~~~a~~vl~~~~~~ie~~~~~~g~~-~~----~lp~et~~~~~~~da~l~G~~~~p~~~~~~s 102 (359)
..++|++|||||||||||+++++||++.+++++|+++++|.+ ++ ++|++++++|+++|++||||+++|...+++|
T Consensus 40 ~~~~I~vipGDGIGpEV~~aa~~Vl~a~~~~ie~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~L~G~i~~p~~~~~~s 119 (372)
T PLN00118 40 TPITATLFPGDGIGPEIAESVKQVFTAAGVPIEWEEHYVGTTVDPRTGSFLTWESLESVRRNKVGLKGPMATPIGKGHRS 119 (372)
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHHhcCCCeEEEEEeCcHHHHHhcCCcCCHHHHHHHHHCCEEEECCccCCccccccC
Confidence 358999999999999999999999999999999999999987 43 8999999999999999999999996667789
Q ss_pred chHHHHhhcCcEEEEEEeecCCCCCCCcccccEEEEecCCcceEeccceeeeCCEEEEEEeecHHHHHHHHHHHHHHHHh
Q 018224 103 LNVQLRKELDLYAALVNCFNLPGLPTRHQNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYL 182 (359)
Q Consensus 103 ~~~~LR~~ldlyanvRP~~~~pg~~~~~~~iDivivREnteG~Y~g~~~~~~~~va~~~~~~Tr~~~eRiar~AFe~A~~ 182 (359)
+++.||++||||+||||||++||++++++++|+|||||||||+|+|.+++..+++++++++|||+++|||+|+||+||++
T Consensus 120 ~~~~LRk~ldLyaNvRPvr~~pg~~~~~~~iD~vIVREnteG~Y~g~~~~~~~gv~~~~~v~Tr~~~eRIar~AF~~A~~ 199 (372)
T PLN00118 120 LNLTLRKELGLYANVRPCYSLPGYKTRYDDVDLVTIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKT 199 (372)
T ss_pred chHHHHHHcCCeeeecccccCCCccCcccCceEEEEEecCCCcccceeeeccCCeEEEEEecCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988778899999999999999999999999999
Q ss_pred cCCCcEEEEEcCCchhhchHHHHHHHHHHHhhCCceeeceeeHhHHHHHHHhCCCCccEEEeCCcchhhHHHhhhhhcCC
Q 018224 183 NYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGG 262 (359)
Q Consensus 183 r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~eypdI~~~~~~vD~~~~~Lv~~P~~fdViv~~NlfGDILSDlaa~l~Gg 262 (359)
|++|+||++||+|||+.+||+|+++|+||+++||||++++++||++|||||++|++||||||+|||||||||++++++||
T Consensus 200 r~~k~Vt~v~KaNvlk~tdglf~e~~~eva~eyPdI~~~~~~VDa~a~~Lv~~P~~fDViVt~NLfGDILSDlaa~l~Gg 279 (372)
T PLN00118 200 HGRKRVSAIHKANIMKKTDGLFLKCCREVAEKYPEIVYEEVIIDNCCMMLVKNPALFDVLVMPNLYGDIISDLCAGLIGG 279 (372)
T ss_pred cCCCeEEEEECCccchhhhHHHHHHHHHHHhhCCCceEEeeeHHHHHHHhccCcccCcEEEEcCcccchhhHHHHHhcCC
Confidence 98889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccceeeeCCC-cceEeccccCCCCCcccccccccCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHcCcccCCCC
Q 018224 263 TGVMPGGNVGAD-TAVFEQGASAGNVGNEKVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEEKYRTKDL 341 (359)
Q Consensus 263 lGl~psanig~~-~a~FEp~~~~~HGsApdiaGk~~ANP~a~Ils~ammL~~lg~~~~A~~i~~Av~~~l~~g~~~T~Dl 341 (359)
+||+||+|+|++ .+||||+ |||||||||||+|||+|+|||++|||+|||++++|++|++||.+++++|+++|+||
T Consensus 280 lGlapSanig~~~~a~FEpv----HGSAPdIAGk~iANP~A~IlS~amML~~lG~~~~A~~I~~Av~~~l~~G~~~T~Dl 355 (372)
T PLN00118 280 LGLTPSCNIGENGLALAEAV----HGSAPDIAGKNLANPTALLLSAVMMLRHLKLNEQAEQIHNAILNTIAEGKYRTADL 355 (372)
T ss_pred cccCcceeecCCCCeEEECC----CCChhhhCCCCCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHcCCccCccc
Confidence 999999999988 7999999 99999999999999999999999999999999999999999999999997899999
Q ss_pred CCCCcHHHHHHHHHHhc
Q 018224 342 GGGCTTQQIVDAVIANL 358 (359)
Q Consensus 342 gg~~~T~e~~~av~~~l 358 (359)
||++||+||+|+|+++|
T Consensus 356 GG~~sT~e~~dav~~~l 372 (372)
T PLN00118 356 GGSSTTTDFTKAICDHL 372 (372)
T ss_pred CCCcCHHHHHHHHHhhC
Confidence 99999999999999976
No 6
>PRK14025 multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional
Probab=100.00 E-value=7.9e-114 Score=840.08 Aligned_cols=320 Identities=36% Similarity=0.589 Sum_probs=310.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEecCc-cc----CCcHHHHHHHHhcCceeeccccCCCCCCcccch
Q 018224 30 RAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGD-MK----RVPQQVLDSIRKNKVCLKGGLKTPVGGGVSSLN 104 (359)
Q Consensus 30 ~~I~vi~GDGIGpEV~~~a~~vl~~~~~~ie~~~~~~g~~-~~----~lp~et~~~~~~~da~l~G~~~~p~~~~~~s~~ 104 (359)
++|++|||||||||||+++++||++++++++|+++++|.+ ++ ++|++++++|+++|++||||+++|. ++.+
T Consensus 2 ~~I~vipGDGIGpEv~~~~~~vl~~~~~~~~~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~l~G~vg~p~----~~~~ 77 (330)
T PRK14025 2 HKICVIEGDGIGKEVVPAALHVLEATGLPFEFVYAEAGDEVFEKTGKALPEETIEAAKEADAVLFGAAGETA----ADVI 77 (330)
T ss_pred eEEEEECCCcccHHHHHHHHHHHHhcCCcEEEEEEcCCHHHHHHhCCCCCHHHHHHHHHCCEEEEccCCCCc----cchH
Confidence 5899999999999999999999999999999999999987 42 8999999999999999999999872 5779
Q ss_pred HHHHhhcCcEEEEEEeecCCCCCCCcccccEEEEecCCcceEeccceeeeCCEEEEEEeecHHHHHHHHHHHHHHHHhc-
Q 018224 105 VQLRKELDLYAALVNCFNLPGLPTRHQNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLN- 183 (359)
Q Consensus 105 ~~LR~~ldlyanvRP~~~~pg~~~~~~~iDivivREnteG~Y~g~~~~~~~~va~~~~~~Tr~~~eRiar~AFe~A~~r- 183 (359)
+.||++||||+|+||||++||++++++++|+|||||||||+|+|.+++..+++++++++|||+++|||+|+||+||++|
T Consensus 78 ~~LR~~ldlyanvRP~r~~pg~~~~~~~iD~vivREnteG~Y~g~~~~~~~~~~~~~~~~Tr~~~~Ri~r~Af~~A~~r~ 157 (330)
T PRK14025 78 VKLRRILDTYANVRPVKSYKGVKCLYPDIDYVIVRENTEGLYKGIEAEIADGVTVATRVITRKASERIFRFAFEMAKRRK 157 (330)
T ss_pred HHHHHHcCCeEEEEEeecCCCCCCccCCcCEEEEEECCCceecCcccccCCCceEEeEeccHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999887788999999999999999999999999999
Q ss_pred ---CCCcEEEEEcCCchhhchHHHHHHHHHHHhhCCceeeceeeHhHHHHHHHhCCCCccEEEeCCcchhhHHHhhhhhc
Q 018224 184 ---YRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIA 260 (359)
Q Consensus 184 ---~~~~Vt~v~KaNvl~~tdglf~~~~~eva~eypdI~~~~~~vD~~~~~Lv~~P~~fdViv~~NlfGDILSDlaa~l~ 260 (359)
++|+||++||+|||+.+||||+++|+||+++||+|++++++||++|||||++|++||||||+|||||||||++|+++
T Consensus 158 ~~~~~k~Vt~v~KaNvl~~t~glf~e~~~eva~~yp~i~~~~~~vDa~~~~lv~~P~~fDVivt~NlfGDILSDlaa~l~ 237 (330)
T PRK14025 158 KMGKEGKVTCAHKANVLKKTDGLFKKTFYEVAKEYPDIKAEDYYVDAMNMYIITRPQTFDVVVTSNLFGDILSDGAAGLV 237 (330)
T ss_pred ccCCCCeEEEEECCCchhhhhHHHHHHHHHHHhhCCCeEEEeeeHHHHHHHHhcCcccCcEEEEcCcccchhhHHHHHhc
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccceeeeCCCcceEeccccCCCCCcccccccccCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHcCcccCCC
Q 018224 261 GGTGVMPGGNVGADTAVFEQGASAGNVGNEKVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEEKYRTKD 340 (359)
Q Consensus 261 GglGl~psanig~~~a~FEp~~~~~HGsApdiaGk~~ANP~a~Ils~ammL~~lg~~~~A~~i~~Av~~~l~~g~~~T~D 340 (359)
||+||+||+|+|++++||||+ |||||||||||+|||+|+|||++|||+|||++++|++|++||++++++| ++|+|
T Consensus 238 GglGl~psanig~~~a~FEp~----HGSAPdiAGk~iANP~a~IlS~ammL~~lG~~~~A~~I~~Av~~vl~~g-~~T~D 312 (330)
T PRK14025 238 GGLGLAPSANIGDKYGLFEPV----HGSAPDIAGKGIANPTATILTAVLMLRHLGENEEADKVEKALEEVLALG-LTTPD 312 (330)
T ss_pred CCCCcccceeeCCCcceeEcC----CCCchhhCCCCCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcC-CCCcc
Confidence 999999999999999999999 9999999999999999999999999999999999999999999999999 78999
Q ss_pred CCCCCcHHHHHHHHHHhc
Q 018224 341 LGGGCTTQQIVDAVIANL 358 (359)
Q Consensus 341 lgg~~~T~e~~~av~~~l 358 (359)
|||++||+||+++|+++|
T Consensus 313 lGG~~~T~e~~~av~~~~ 330 (330)
T PRK14025 313 LGGNLSTMEMAEEVAKRV 330 (330)
T ss_pred cCCCcCHHHHHHHHHHhC
Confidence 999999999999999875
No 7
>TIGR00175 mito_nad_idh isocitrate dehydrogenase, NAD-dependent, mitochondrial type. The NADP-dependent IDH of Thermus aquaticus thermophilus strain HB8 resembles these NAD-dependent IDH, except for the residues involved in cofactor specificity, much more closely than it resembles other prokaryotic NADP-dependent IDH, including that of Thermus aquaticus strain YT1.
Probab=100.00 E-value=2.1e-112 Score=833.21 Aligned_cols=329 Identities=61% Similarity=0.961 Sum_probs=315.2
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEecCc-c--cCCcHHHHHHHHhcCceeeccccCCCCCC-ccc
Q 018224 27 GSPRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGD-M--KRVPQQVLDSIRKNKVCLKGGLKTPVGGG-VSS 102 (359)
Q Consensus 27 ~~~~~I~vi~GDGIGpEV~~~a~~vl~~~~~~ie~~~~~~g~~-~--~~lp~et~~~~~~~da~l~G~~~~p~~~~-~~s 102 (359)
+++++|++|||||||||||+++++||++++++++|+++++|++ . .++|++++++|+++|++||||+++|...+ ++|
T Consensus 1 ~g~~~i~vlpGDGIGpEv~~~a~~vl~~~~~~i~~~~~~~G~~~~~g~~lp~~~l~~~~~~da~l~Gav~~p~~~~~~~s 80 (333)
T TIGR00175 1 GGKYTVTLIPGDGIGPEISGSVKKIFRAANVPIEFEEIDVSPQTDGKTEIPDEAVESIKRNKVALKGPLETPIGKGGHRS 80 (333)
T ss_pred CCcEEEEEECCCcccHHHHHHHHHHHHhCCCceEEEEEecChhhccCCcCCHHHHHHHHHCCEEEEcccCCccccccccc
Confidence 3568999999999999999999999999999999999999976 2 28999999999999999999999985444 778
Q ss_pred chHHHHhhcCcEEEEEEeecCCCCCCCcccccEEEEecCCcceEeccceeeeCCEEEEEEeecHHHHHHHHHHHHHHHHh
Q 018224 103 LNVQLRKELDLYAALVNCFNLPGLPTRHQNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYL 182 (359)
Q Consensus 103 ~~~~LR~~ldlyanvRP~~~~pg~~~~~~~iDivivREnteG~Y~g~~~~~~~~va~~~~~~Tr~~~eRiar~AFe~A~~ 182 (359)
+++.||+.||||+|+||||++||++++++++|++||||||||+|+|.+++..+++++++++|||+++|||+|+||+||++
T Consensus 81 ~~~~lR~~ldlyanvRP~k~~pg~~~~~~~iD~vivREnteG~Y~g~~~~~~~~~~~~~~~~Tr~~~eRi~r~Af~~A~~ 160 (333)
T TIGR00175 81 LNVALRKELDLYANVVHCKSLPGFKTRHEDVDIVIIRENTEGEYSGLEHESVPGVVESLKVITRDKSERIARYAFEYARK 160 (333)
T ss_pred hhHHHHHHcCCEEEeEEecCCCCCCCCCCCcCEEEEEEeCCCcccceeEeccCCeEEEEEecCHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999987778899999999999999999999999999
Q ss_pred cCCCcEEEEEcCCchhhchHHHHHHHHHHHhhCCceeeceeeHhHHHHHHHhCCCCccEEEeCCcchhhHHHhhhhhcCC
Q 018224 183 NYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGG 262 (359)
Q Consensus 183 r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~eypdI~~~~~~vD~~~~~Lv~~P~~fdViv~~NlfGDILSDlaa~l~Gg 262 (359)
|++|+||++||+|||+.+||+|+++|+|++++||+|+++|++||+++|+||++|++||||||+|||||||||++++++||
T Consensus 161 r~~k~Vt~v~KaNvl~~t~glf~~~~~eva~~yp~v~~~~~~vDa~~~~lv~~P~~fdViVt~NlfGDILSDlaa~l~Gs 240 (333)
T TIGR00175 161 NGRKKVTAVHKANIMKLADGLFLNVCREVAKEYPDITFESMIVDNTCMQLVSRPSQFDVMVMPNLYGNILSNLGAGLVGG 240 (333)
T ss_pred cCCCeEEEEECCccchhhHHHHHHHHHHHHHHCCCCeeeeeeHHHHHHHHhcCcccccEEEEccccchhhhHHHHHhcCC
Confidence 98788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccceeeeCCCcceEeccccCCCCCcccccccccCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHcCcccCCCCC
Q 018224 263 TGVMPGGNVGADTAVFEQGASAGNVGNEKVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEEKYRTKDLG 342 (359)
Q Consensus 263 lGl~psanig~~~a~FEp~~~~~HGsApdiaGk~~ANP~a~Ils~ammL~~lg~~~~A~~i~~Av~~~l~~g~~~T~Dlg 342 (359)
+||+||+|+|++++||||+ + |||||||||||+|||+|+|||++|||+|||++++|++|++||.+++++|+++|+|||
T Consensus 241 lGl~pSanig~~~a~fEp~-~--hGSApdiaGk~iaNP~a~Ils~ammL~~lG~~~~a~~i~~Av~~~l~~G~~~T~DlG 317 (333)
T TIGR00175 241 PGLVPGANIGRDYAVFEPG-V--RHTGPDIAGQNIANPTALILSSVMMLNHLGLKEHADRIQKAVLSTIAEGKNRTKDLG 317 (333)
T ss_pred cccCceeEEcCCCceEecc-C--CCCchhhCCCCccChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcCCccChhcC
Confidence 9999999999999999995 2 799999999999999999999999999999999999999999999999977899999
Q ss_pred CCCcHHHHHHHHHHhc
Q 018224 343 GGCTTQQIVDAVIANL 358 (359)
Q Consensus 343 g~~~T~e~~~av~~~l 358 (359)
|++||+||+++|+++|
T Consensus 318 G~~~T~e~~~ai~~~l 333 (333)
T TIGR00175 318 GTATTSDFTEAVIKRL 333 (333)
T ss_pred CCcCHHHHHHHHHhhC
Confidence 9999999999999876
No 8
>PRK08194 tartrate dehydrogenase; Provisional
Probab=100.00 E-value=3.2e-112 Score=835.56 Aligned_cols=325 Identities=27% Similarity=0.477 Sum_probs=305.6
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHHHHHc-----CCCeeEEEEEecCc-cc----CCcHHHHHHHHhcCceeeccccCCC-
Q 018224 28 SPRAVTLIPGDGIGPLVTNAVEQVMEAM-----HAPIYFEKYEVHGD-MK----RVPQQVLDSIRKNKVCLKGGLKTPV- 96 (359)
Q Consensus 28 ~~~~I~vi~GDGIGpEV~~~a~~vl~~~-----~~~ie~~~~~~g~~-~~----~lp~et~~~~~~~da~l~G~~~~p~- 96 (359)
+.++|+||||||||||||+++++||+++ +++++|+++++|.+ ++ ++|++++++||++|++||||+++|.
T Consensus 2 ~~~~I~vipGDGIGpEV~~~a~~vl~a~~~~~~~~~~e~~~~~~G~~~~~~~G~~lp~~tl~~~k~~dail~G~vg~p~~ 81 (352)
T PRK08194 2 KQFKIAVIPGDGVGKEVVPAAVRVLKAVAEVHGGLKFEFTEFPWSCEYYLEHGEMMPEDGLEQLKQFDAIFLGAVGNPKL 81 (352)
T ss_pred CceEEEEECCCCchHHHHHHHHHHHHHHHhhccCCceEEEEEcCcHHHHHHhCCCCCHHHHHHHHhCCEEEEcccCCCCc
Confidence 4689999999999999999999999976 58999999999987 43 8999999999999999999999984
Q ss_pred CCCcc---cchHHHHhhcCcEEEEEEeecCCCCCCCc---ccccEEEEecCCcceEeccceee---eCCEEEEEEeecHH
Q 018224 97 GGGVS---SLNVQLRKELDLYAALVNCFNLPGLPTRH---QNVDIVVIRENTEGEYSGLEHEV---VPGVVESLKVITKF 167 (359)
Q Consensus 97 ~~~~~---s~~~~LR~~ldlyanvRP~~~~pg~~~~~---~~iDivivREnteG~Y~g~~~~~---~~~va~~~~~~Tr~ 167 (359)
.++++ ++++.||++||||+|+||||++||+++|+ +++|+|||||||||+|+|.++.. ..++++++++|||+
T Consensus 82 ~~~~~~~~~~~l~LR~~ldLyaNvRP~k~~pg~~splk~~~~iD~vivREnteG~Y~g~~~~~~~g~~~~a~~~~~~Tr~ 161 (352)
T PRK08194 82 VPDHISLWGLLIKIRREFEQVINIRPAKQLRGIKSPLANPKDFDLLVVRENSEGEYSEVGGRIHRGEDEIAIQNAVFTRK 161 (352)
T ss_pred CCCCCCchhhHHHHHHHcCCEEEEEeeecCCCCCCCCCCCCCCCEEEEEeCCCccccCCCccccCCccceEEEEEEeeHH
Confidence 23333 44999999999999999999999999987 68999999999999999987553 23578999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHhhCCceeeceeeHhHHHHHHHhCCCCccEEEeCCc
Q 018224 168 CSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNL 247 (359)
Q Consensus 168 ~~eRiar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~eypdI~~~~~~vD~~~~~Lv~~P~~fdViv~~Nl 247 (359)
++|||+|+||++|++| +++||+|||+|||+.+++||+++|+||+++||||++++++||++|||||++|++||||||+||
T Consensus 162 ~~eRI~r~Af~~A~~r-~~~Vt~v~KaNvl~~t~~lf~~~~~eva~~yp~V~~~~~~vDa~~~~Lv~~P~~fDVIVt~Nl 240 (352)
T PRK08194 162 GTERAMRYAFELAAKR-RKHVTSATKSNGIVHSMPFWDEVFQEVGKDYPEIETDSQHIDALAAFFVTRPEEFDVIVASNL 240 (352)
T ss_pred HHHHHHHHHHHHHHHc-CCcEEEEeCcchhhhhHHHHHHHHHHHHhhCCCceeeehhHHHHHHHHhhChhhCcEEEEccc
Confidence 9999999999999998 678999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHhhhhhcCCCCccceeeeCCC--c-ceEeccccCCCCCcccccccccCChhHHHHHHHHHHhhcCCHHHHHHHH
Q 018224 248 YGNLVSNTAAGIAGGTGVMPGGNVGAD--T-AVFEQGASAGNVGNEKVVEQKKANPVALLLSSAMMLRHLQFPSFADRLE 324 (359)
Q Consensus 248 fGDILSDlaa~l~GglGl~psanig~~--~-a~FEp~~~~~HGsApdiaGk~~ANP~a~Ils~ammL~~lg~~~~A~~i~ 324 (359)
|||||||++++++||+||+||+|||++ . +||||+ |||||||||||+|||+|+|||++|||+|||++++|++|+
T Consensus 241 fGDILSDlaa~l~GslGl~pSanig~~~~~~alFEp~----HGSAPdiAGk~iANP~a~IlS~amML~~lg~~~~A~~i~ 316 (352)
T PRK08194 241 FGDILTDIGAAIMGSIGIAPAANINVNGKYPSMFEPV----HGSAPDIAGKGIANPIGQIWTAKLMLDHFGEEELGSHLL 316 (352)
T ss_pred hHHHHhHHHHHhcCCccccceeeecCCCCcceEEECC----CCCchhhCCCCcCCcHHHHHHHHHHHHHcCChhHHHHHH
Confidence 999999999999999999999999954 3 899999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCcccCCCCCCCCcHHHHHHHHHHhc
Q 018224 325 TAVKRVISEEKYRTKDLGGGCTTQQIVDAVIANL 358 (359)
Q Consensus 325 ~Av~~~l~~g~~~T~Dlgg~~~T~e~~~av~~~l 358 (359)
+||++++++| ++|+||||++||+||+++|+++|
T Consensus 317 ~Av~~~l~~g-~~T~DlGG~~~T~e~~~ai~~~l 349 (352)
T PRK08194 317 DVIEDVTEDG-IKTPDIGGRATTDEVTDEIISRL 349 (352)
T ss_pred HHHHHHHHcC-CCcCcCCCCcCHHHHHHHHHHHH
Confidence 9999999999 79999999999999999999987
No 9
>TIGR02089 TTC tartrate dehydrogenase. Tartrate dehydrogenase catalyzes the oxidation of both meso- and (+)-tartrate as well as a D-malate. These enzymes are closely related to the 3-isopropylmalate and isohomocitrate dehydrogenases found in TIGR00169 and TIGR02088, respectively.
Probab=100.00 E-value=1.1e-111 Score=832.45 Aligned_cols=325 Identities=32% Similarity=0.519 Sum_probs=305.7
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHHHHHc-----CCCeeEEEEEecCc-cc----CCcHHHHHHHHhcCceeeccccCCCC
Q 018224 28 SPRAVTLIPGDGIGPLVTNAVEQVMEAM-----HAPIYFEKYEVHGD-MK----RVPQQVLDSIRKNKVCLKGGLKTPVG 97 (359)
Q Consensus 28 ~~~~I~vi~GDGIGpEV~~~a~~vl~~~-----~~~ie~~~~~~g~~-~~----~lp~et~~~~~~~da~l~G~~~~p~~ 97 (359)
++++|++||||||||||++++++||+++ +++++|+++++|++ ++ ++|++++++|+++|++||||+++|..
T Consensus 2 ~~~~I~vipGDGIGpEV~~aa~~Vl~a~~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~k~~da~L~G~vg~p~~ 81 (352)
T TIGR02089 2 KQYRIAAIPGDGIGKEVVAAALQVLEAAAKRHGGFSLHFTEFPWSCDYYKEHGKMMPEDGLEKLKKFDAIFLGAVGWPAL 81 (352)
T ss_pred CceEEEEECCCcccHHHHHHHHHHHHHHHhhcCCcceEEEEECCcHHHHHHhCCCCCHHHHHHHHhCCEEEEecccCCCC
Confidence 5689999999999999999999999976 58999999999986 43 99999999999999999999999842
Q ss_pred -C---CcccchHHHHhhcCcEEEEEEeecCCCCCCCc-----ccccEEEEecCCcceEeccceeee----CCEEEEEEee
Q 018224 98 -G---GVSSLNVQLRKELDLYAALVNCFNLPGLPTRH-----QNVDIVVIRENTEGEYSGLEHEVV----PGVVESLKVI 164 (359)
Q Consensus 98 -~---~~~s~~~~LR~~ldlyanvRP~~~~pg~~~~~-----~~iDivivREnteG~Y~g~~~~~~----~~va~~~~~~ 164 (359)
+ +.+++++.|||+||||+|+||||++||+++|+ +++|+|||||||||+|+|.+++.. +++++++++|
T Consensus 82 ~~~~~~~~~~~l~LRk~ldLyaNvRP~~~~~g~~sp~k~~~~~~iD~vivREnteG~Y~G~~~~~~~~~~~~~a~~~~~~ 161 (352)
T TIGR02089 82 VPDHISLWGLLLKIRREFDQYANVRPAKLLPGVTSPLRNCGPGDFDFVVVRENSEGEYSGVGGRIHRGTDEEVATQNAIF 161 (352)
T ss_pred CCCccCchhhHHHHHHHcCCeEEEEEeecCCCCCCccccccCCCCCEEEEEecCCcccccccccccCCccceeEEEeEEe
Confidence 1 33456999999999999999999999999987 589999999999999999875432 3578899999
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHhhCCceeeceeeHhHHHHHHHhCCCCccEEEe
Q 018224 165 TKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVT 244 (359)
Q Consensus 165 Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~eypdI~~~~~~vD~~~~~Lv~~P~~fdViv~ 244 (359)
||+++|||+|+||+||++| +++||++||+|||+.+++||+++|+||+++||+|++++++||++|||||++|++||||||
T Consensus 162 tr~~~eRi~r~Af~~A~~r-r~kVt~v~KaNvl~~t~~lf~~~~~eva~~yp~v~~~~~~vD~~~~~lv~~P~~fDVivt 240 (352)
T TIGR02089 162 TRKGVERIMRFAFELAQKR-RKHLTSATKSNGIRHSMPFWDEVFAEVAAEYPDVEWDSYHIDALAARFVLKPETFDVIVA 240 (352)
T ss_pred cHHHHHHHHHHHHHHHHHc-CCCEEEEeCCcchhhhhHHHHHHHHHHHhhCCCceEeeehHHHHHHHHhcChhhCcEEEe
Confidence 9999999999999999999 889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchhhHHHhhhhhcCCCCccceeeeCCC---cceEeccccCCCCCcccccccccCChhHHHHHHHHHHhhcCCHHHHH
Q 018224 245 PNLYGNLVSNTAAGIAGGTGVMPGGNVGAD---TAVFEQGASAGNVGNEKVVEQKKANPVALLLSSAMMLRHLQFPSFAD 321 (359)
Q Consensus 245 ~NlfGDILSDlaa~l~GglGl~psanig~~---~a~FEp~~~~~HGsApdiaGk~~ANP~a~Ils~ammL~~lg~~~~A~ 321 (359)
+|||||||||++++++||+||+||+|||++ .+||||+ |||||||||||+|||+|+|||++|||+|||++++|+
T Consensus 241 ~NlfGDILSD~aa~l~GglGl~psanig~~~~~~a~fEp~----HGSAPdiAGk~iANP~a~Ils~amML~~lg~~~~A~ 316 (352)
T TIGR02089 241 SNLFGDILSDLGAALMGSLGVAPSANINPEGKFPSMFEPV----HGSAPDIAGKGIANPIGAIWTAAMMLEHLGEKEAGA 316 (352)
T ss_pred cccchhhhhHHHHHhcCCccccceEEecCCCCcceeeecC----CCCchhhcCCCccCcHHHHHHHHHHHHHcCChhHHH
Confidence 999999999999999999999999999964 3899999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCcccCCCCCCCCcHHHHHHHHHHhc
Q 018224 322 RLETAVKRVISEEKYRTKDLGGGCTTQQIVDAVIANL 358 (359)
Q Consensus 322 ~i~~Av~~~l~~g~~~T~Dlgg~~~T~e~~~av~~~l 358 (359)
+|++||++++++| ++|+||||++||+||+|+|+++|
T Consensus 317 ~I~~Av~~~l~~g-~~T~DlGG~~sT~e~~~ai~~~l 352 (352)
T TIGR02089 317 KIMDAIERVTAAG-ILTPDVGGKATTSEVTEAVCNAL 352 (352)
T ss_pred HHHHHHHHHHHcC-CccCCCCCCcCHHHHHHHHHhhC
Confidence 9999999999999 79999999999999999999875
No 10
>PRK09222 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=1.3e-111 Score=854.09 Aligned_cols=326 Identities=42% Similarity=0.661 Sum_probs=315.3
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEecCc-cc-----CCcHHHHHHHHhcCceeeccccCCCCCCcc
Q 018224 28 SPRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGD-MK-----RVPQQVLDSIRKNKVCLKGGLKTPVGGGVS 101 (359)
Q Consensus 28 ~~~~I~vi~GDGIGpEV~~~a~~vl~~~~~~ie~~~~~~g~~-~~-----~lp~et~~~~~~~da~l~G~~~~p~~~~~~ 101 (359)
.+++|+||||||||||||+++++||++++++++|+++++|.+ ++ ++|++++++|+++|++||||+++|..++++
T Consensus 3 ~~~~I~vipGDGIGPEV~~a~~~VL~a~~~~i~~~~~~~G~~~~~~~g~~~lp~~~~~~i~~~da~LkG~i~tP~~~~~~ 82 (482)
T PRK09222 3 EKTPITVAYGDGIGPEIMEAVLKILEAAGAPLEIETIEIGEKVYKKGWTSGISPSAWESIRRTKVLLKAPITTPQGGGYK 82 (482)
T ss_pred CcceEEEECCCcccHHHHHHHHHHHHhcCCceEEEEEcCCHHHHHhcCCCCCCHHHHHHHHHCCEEEEccccCCCccCcc
Confidence 458999999999999999999999999999999999999986 32 799999999999999999999999766788
Q ss_pred cchHHHHhhcCcEEEEEEeecC-CCCCCCcccccEEEEecCCcceEeccceeeeCCEEEEEEeecHHHHHHHHHHHHHHH
Q 018224 102 SLNVQLRKELDLYAALVNCFNL-PGLPTRHQNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYA 180 (359)
Q Consensus 102 s~~~~LR~~ldlyanvRP~~~~-pg~~~~~~~iDivivREnteG~Y~g~~~~~~~~va~~~~~~Tr~~~eRiar~AFe~A 180 (359)
|+++.||+.|||||||||||++ ||++++++++|+|||||||||+|+|+|++..+++++++++|||+++|||+|+||+||
T Consensus 83 s~~~~LRk~ldLYaNvRP~r~~~pgv~~~~~~iD~vIVRENtEG~Y~G~e~~~~~~~~~~~k~iTr~~~eRI~r~AFe~A 162 (482)
T PRK09222 83 SLNVTLRKTLGLYANVRPCVSYHPFVETKHPNLDVVIIRENEEDLYAGIEHRQTPDVYQCLKLISRPGSEKIIRYAFEYA 162 (482)
T ss_pred chHHHHHHHcCCeEEeeeEEecCCCCCCCCCCcCEEEEEeccCCeeccceeecCCCeeeEeeccCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 999999999999999999999999999987788999999999999999999999999
Q ss_pred HhcCCCcEEEEEcCCchhhchHHHHHHHHHHHhhCCceeeceeeHhHHHHHHHhCCCCccEEEeCCcchhhHHHhhhhhc
Q 018224 181 YLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIA 260 (359)
Q Consensus 181 ~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~eypdI~~~~~~vD~~~~~Lv~~P~~fdViv~~NlfGDILSDlaa~l~ 260 (359)
++|++|+||++||+|||+.|||||+++|+||+++||||+++|++||++||+||++|++||||||+|||||||||++|+++
T Consensus 163 ~~r~rkkVt~v~KaNVmk~tdglf~~v~~eva~eyPdI~~~~~~VDa~a~~Lv~~P~~FDVIVt~NLfGDILSDlaa~l~ 242 (482)
T PRK09222 163 RANGRKKVTCLTKDNIMKLTDGLFHKVFDEIAKEYPDIEAEHYIVDIGAARLATNPENFDVIVTPNLYGDILSDIAAEIS 242 (482)
T ss_pred HhcCCCeEEEEECCCcccccchHHHHHHHHHHhhCCCceEeeeeHHHHHHHHhcCcccceEEEEcccccchhhHHHHHhc
Confidence 99988899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccceeeeCCCcceEeccccCCCCCcccccccccCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHcCcccCCC
Q 018224 261 GGTGVMPGGNVGADTAVFEQGASAGNVGNEKVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEEKYRTKD 340 (359)
Q Consensus 261 GglGl~psanig~~~a~FEp~~~~~HGsApdiaGk~~ANP~a~Ils~ammL~~lg~~~~A~~i~~Av~~~l~~g~~~T~D 340 (359)
||+||+||+|+|++++||||+ |||||||||||+|||+|+|||++|||+|||++++|++|++||.+++++| ++|+|
T Consensus 243 GslGlapSanig~~~amFEpv----HGSAPdIAGk~iANP~a~IlSaamML~hlG~~~~A~~I~~Av~~tl~~G-~~T~D 317 (482)
T PRK09222 243 GSVGLAGSANIGEEYAMFEAV----HGSAPDIAGKNIANPSGLLNAAVMMLVHIGQFDIAELIENAWLKTLEDG-IHTAD 317 (482)
T ss_pred CCcccccceecCCCceeeECC----CCCchhhcCCCccCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHcC-CCCcc
Confidence 999999999999999999999 9999999999999999999999999999999999999999999999999 79999
Q ss_pred CCC------CCcHHHHHHHHHHhc
Q 018224 341 LGG------GCTTQQIVDAVIANL 358 (359)
Q Consensus 341 lgg------~~~T~e~~~av~~~l 358 (359)
||| +++|+||+++|+++|
T Consensus 318 l~g~~~~~~~~~T~e~~~aVi~~l 341 (482)
T PRK09222 318 IYNEGVSKKKVGTKEFAEAVIENL 341 (482)
T ss_pred cCCCCCCCCCcCHHHHHHHHHHHH
Confidence 955 589999999999987
No 11
>TIGR02924 ICDH_alpha isocitrate dehydrogenase. This family of mainly alphaproteobacterial enzymes is a member of the isocitrate/isopropylmalate dehydrogenase superfamily described by pfam00180. Every member of the seed of this model appears to have a TCA cycle lacking only a determined isocitrate dehydrogenase. The precise identity of the cofactor (NADH -- 1.1.1.41 vs. NADPH -- 1.1.1.42) is unclear.
Probab=100.00 E-value=3.5e-111 Score=848.33 Aligned_cols=323 Identities=40% Similarity=0.622 Sum_probs=312.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEecCc-cc-----CCcHHHHHHHHhcCceeeccccCCCCCCcccch
Q 018224 31 AVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGD-MK-----RVPQQVLDSIRKNKVCLKGGLKTPVGGGVSSLN 104 (359)
Q Consensus 31 ~I~vi~GDGIGpEV~~~a~~vl~~~~~~ie~~~~~~g~~-~~-----~lp~et~~~~~~~da~l~G~~~~p~~~~~~s~~ 104 (359)
+|+||||||||||||+++++||++++++++|+++++|.+ ++ .+|++++++|+++|++||||+++|..++++|++
T Consensus 2 ~I~vipGDGIGPEV~~aa~~VL~a~~~~i~~~~~~~G~~~~~~~gg~~lpdetl~~i~~~da~LkG~i~tp~~~~~~s~~ 81 (473)
T TIGR02924 2 PITVAYGDGIGPEIMEAVLLILKEAEAPIDIETIEIGEKVYKKGWPSGISPSSWESIRRTKVLLKAPITTPQGGGHKSLN 81 (473)
T ss_pred eEEEEcCCcccHHHHHHHHHHHHhcCCCeEEEEEcCCHHHHHhhCCCCCCHHHHHHHHHCCEEEECcccCCCccCcccHH
Confidence 699999999999999999999999999999999999986 42 899999999999999999999999766788999
Q ss_pred HHHHhhcCcEEEEEEeecC-CCCCCCcccccEEEEecCCcceEeccceeeeCCEEEEEEeecHHHHHHHHHHHHHHHHhc
Q 018224 105 VQLRKELDLYAALVNCFNL-PGLPTRHQNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLN 183 (359)
Q Consensus 105 ~~LR~~ldlyanvRP~~~~-pg~~~~~~~iDivivREnteG~Y~g~~~~~~~~va~~~~~~Tr~~~eRiar~AFe~A~~r 183 (359)
+.||+.||||||+|||+++ ||++++++++|+|||||||||+|+|.|++..+++++++++|||+++|||+|+||+||++|
T Consensus 82 ~~LRk~ldLYANvRPv~~~~p~~~~~~~~vDiVIVRENtEGlY~G~e~~~~~~~~~~~kviTr~g~eRI~r~AFe~A~~r 161 (473)
T TIGR02924 82 VTLRKTLGLYANIRPCVSYHPFIETKSPNLNIVIVRENEEDLYTGIEYRQTPDTYECTKLITRSGSEKICRYAFEYARKH 161 (473)
T ss_pred HHHHHHcCCeEEEEEeeccCCCCCCccCCcCEEEEEeccCceecCceeeccCChheEeEecCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999 999999999999999999999999999987778899999999999999999999999999
Q ss_pred CCCcEEEEEcCCchhhchHHHHHHHHHHHhhCCceeeceeeHhHHHHHHHhCCCCccEEEeCCcchhhHHHhhhhhcCCC
Q 018224 184 YRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGT 263 (359)
Q Consensus 184 ~~~~Vt~v~KaNvl~~tdglf~~~~~eva~eypdI~~~~~~vD~~~~~Lv~~P~~fdViv~~NlfGDILSDlaa~l~Ggl 263 (359)
+||+||++||+|||+.|||||+++|+||+++||+|+++|++||+++|+|+++|++||||||+|||||||||++|+++||+
T Consensus 162 ~rkkVT~v~KaNVmk~tdglf~e~~~eva~eyPdI~~e~~~VDa~a~~Lv~~P~~FDVIVt~NLfGDILSDlaA~l~Gsl 241 (473)
T TIGR02924 162 NRKKVTCLTKDNIMKMTDGIFHKIFDKIAAEYPDIESEHYIVDIGMARLATNPENFDVIVTPNLYGDILSDVAAEISGSV 241 (473)
T ss_pred CCCeEEEEECCccccccchhHHHHHHHHHhhCCCcEEeeHHHHHHHHHHhhCcccceEEEEccccchhhhHHHHHhcCCc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccceeeeCCCcceEeccccCCCCCcccccccccCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHcCcccCCCCC-
Q 018224 264 GVMPGGNVGADTAVFEQGASAGNVGNEKVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEEKYRTKDLG- 342 (359)
Q Consensus 264 Gl~psanig~~~a~FEp~~~~~HGsApdiaGk~~ANP~a~Ils~ammL~~lg~~~~A~~i~~Av~~~l~~g~~~T~Dlg- 342 (359)
||+||+|+|++++||||+ |||||||||||+|||+|+|||++|||+|||+.++|++|++||.+++++| ++|+|||
T Consensus 242 GlapSaNiG~~~amFEpv----HGSAPdIAGk~iANP~a~IlSaamML~hLG~~~~A~~I~~AV~~vl~~G-~~T~Dl~~ 316 (473)
T TIGR02924 242 GLAGSANIGEEYAMFEAV----HGSAPDIAGQNIANPSGLLNAAIQMLVHIGQSDIAQLIYNAWLKTLEDG-VHTADIYN 316 (473)
T ss_pred CcccceecCCCcceeecC----CCchhhhCCCCccChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcC-CcCccccc
Confidence 999999999999999999 9999999999999999999999999999999999999999999999999 7999994
Q ss_pred -----CCCcHHHHHHHHHHhc
Q 018224 343 -----GGCTTQQIVDAVIANL 358 (359)
Q Consensus 343 -----g~~~T~e~~~av~~~l 358 (359)
|++||+||+|+|+++|
T Consensus 317 ~~~~gg~~sT~e~~daVi~~l 337 (473)
T TIGR02924 317 EKTSKQKVGTKEFAEAVTANL 337 (473)
T ss_pred cccCCCCcCHHHHHHHHHHHh
Confidence 6899999999999987
No 12
>PRK03437 3-isopropylmalate dehydrogenase; Provisional
Probab=100.00 E-value=4.5e-110 Score=818.20 Aligned_cols=321 Identities=32% Similarity=0.513 Sum_probs=303.0
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHHHHHc---CCCeeEEEEEecCc-cc----CCcHHHHHHHHhcCceeeccccCCCCC-
Q 018224 28 SPRAVTLIPGDGIGPLVTNAVEQVMEAM---HAPIYFEKYEVHGD-MK----RVPQQVLDSIRKNKVCLKGGLKTPVGG- 98 (359)
Q Consensus 28 ~~~~I~vi~GDGIGpEV~~~a~~vl~~~---~~~ie~~~~~~g~~-~~----~lp~et~~~~~~~da~l~G~~~~p~~~- 98 (359)
++++|++|||||||||||+++++||+++ +++++|+++++|++ ++ ++|++++++|+++|++||||+++|..+
T Consensus 3 k~~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~L~Gavg~p~~~~ 82 (344)
T PRK03437 3 KTMKLAVIPGDGIGPEVVAEALKVLDAVAAGGPGVETTEYDLGARRYLRTGETLPDSVLAELRQHDAILLGAIGDPSVPS 82 (344)
T ss_pred ceEEEEEECCCCccHHHHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHCCcCCHHHHHHHHHCCEEEEeecCCCCCCC
Confidence 5689999999999999999999999977 89999999999987 43 899999999999999999999998322
Q ss_pred --CcccchHHHHhhcCcEEEEEEeecCCCCCCCc---ccccEEEEecCCcceEeccceee----eCCEEEEEEeecHHHH
Q 018224 99 --GVSSLNVQLRKELDLYAALVNCFNLPGLPTRH---QNVDIVVIRENTEGEYSGLEHEV----VPGVVESLKVITKFCS 169 (359)
Q Consensus 99 --~~~s~~~~LR~~ldlyanvRP~~~~pg~~~~~---~~iDivivREnteG~Y~g~~~~~----~~~va~~~~~~Tr~~~ 169 (359)
.+++.++.||++||||+|+||||++||+++|+ +++|++||||||||+|+|.+++. .+++++++++|||+++
T Consensus 83 ~~~~~~~~~~LRk~ldLyaNvRP~r~~pg~~sp~k~~~~iD~vivREnteG~Y~g~~~~~~~~~~~~~a~~~~~~Tr~~~ 162 (344)
T PRK03437 83 GVLERGLLLKLRFALDHYVNLRPSKLYPGVTSPLAGPGDIDFVVVREGTEGPYTGNGGALRVGTPHEVATEVSVNTAFGV 162 (344)
T ss_pred CCcccchHHHHHHHcCCeEEEEEeecCCCCCCcCCCCCCCCEEEEEECCCccccCCcccccCCCcceeEEEEEEecHHHH
Confidence 25678999999999999999999999999987 68999999999999999987543 2457889999999999
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHhhCCceeeceeeHhHHHHHHHhCCCCccEEEeCCcch
Q 018224 170 ERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYG 249 (359)
Q Consensus 170 eRiar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~eypdI~~~~~~vD~~~~~Lv~~P~~fdViv~~NlfG 249 (359)
+||+|+||+||++|++++||++||+|||+.+++||+++|+||+++||||++++++||++|||||++|++||||||+||||
T Consensus 163 ~RIa~~AF~~A~~r~~k~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfG 242 (344)
T PRK03437 163 ERVVRDAFERAQKRPRKHLTLVHKTNVLTFAGDLWQRTVDEVAAEYPDVTVDYQHVDAATIFMVTDPSRFDVIVTDNLFG 242 (344)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEECCccccccchHHHHHHHHHHhhCCCceEeehhHHHHHHHHhcCcccCcEEEEcccch
Confidence 99999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhhhhhcCCCCccceeeeCCC---cceEeccccCCCCCcccccccccCChhHHHHHHHHHHhhcCCHHHHHHHHHH
Q 018224 250 NLVSNTAAGIAGGTGVMPGGNVGAD---TAVFEQGASAGNVGNEKVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETA 326 (359)
Q Consensus 250 DILSDlaa~l~GglGl~psanig~~---~a~FEp~~~~~HGsApdiaGk~~ANP~a~Ils~ammL~~lg~~~~A~~i~~A 326 (359)
|||||++++++||+|++||+|+|++ ++||||+ |||||||||||+|||+|+|||++|||+|||++++|++|++|
T Consensus 243 DILSDlaa~l~GglGl~pSanig~~g~~~a~FEp~----HGSAPdiAGk~iANP~a~IlS~amML~~lg~~~~a~~I~~A 318 (344)
T PRK03437 243 DIITDLAAAVTGGIGLAASGNINPTGTNPSMFEPV----HGSAPDIAGQGIADPTAAILSVALLLDHLGEEDAAARIEAA 318 (344)
T ss_pred hhhhHHHHHhcCCccccceeeecCCCCcceeEecC----CCCchhhcCCCccChHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999999999999999964 3999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHcCcccCCCCCCCCcHHHHHHHHHHhc
Q 018224 327 VKRVISEEKYRTKDLGGGCTTQQIVDAVIANL 358 (359)
Q Consensus 327 v~~~l~~g~~~T~Dlgg~~~T~e~~~av~~~l 358 (359)
|++++++| +||.+||+||+++|+++|
T Consensus 319 v~~~l~~g------~gg~~~T~e~~~ai~~~l 344 (344)
T PRK03437 319 VEADLAER------GKMGRSTAEVGDRIAARL 344 (344)
T ss_pred HHHHHHhc------CCCCcCHHHHHHHHHhhC
Confidence 99999998 489999999999999876
No 13
>PLN02329 3-isopropylmalate dehydrogenase
Probab=100.00 E-value=1.1e-109 Score=826.94 Aligned_cols=324 Identities=30% Similarity=0.498 Sum_probs=302.3
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHHHHHc----CCCeeEEEEEecCc-cc----CCcHHHHHHHHhcCceeeccccCCC-C
Q 018224 28 SPRAVTLIPGDGIGPLVTNAVEQVMEAM----HAPIYFEKYEVHGD-MK----RVPQQVLDSIRKNKVCLKGGLKTPV-G 97 (359)
Q Consensus 28 ~~~~I~vi~GDGIGpEV~~~a~~vl~~~----~~~ie~~~~~~g~~-~~----~lp~et~~~~~~~da~l~G~~~~p~-~ 97 (359)
+.++|+||||||||||||+++++||+++ +++++|+++++|++ ++ ++|+++++.|+++|++||||+++|. +
T Consensus 45 ~~~~IavipGDGIGPEV~~aa~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lP~~tl~~~~~~DaiL~Gavg~p~~~ 124 (409)
T PLN02329 45 KRYNIALLPGDGIGPEVISVAKNVLQKAGSLEGLEFDFQEMPVGGAALDLVGVPLPEETFTAAKQSDAILLGAIGGYKWD 124 (409)
T ss_pred ceEEEEEECCCcccHHHHHHHHHHHHHHHhhcCCceEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECcccCCCCC
Confidence 4589999999999999999999999975 58999999999986 43 8999999999999999999999983 2
Q ss_pred CCc-----ccchHHHHhhcCcEEEEEEeecCCCCCC--Cc-----ccccEEEEecCCcceEeccceee-----eCCEEEE
Q 018224 98 GGV-----SSLNVQLRKELDLYAALVNCFNLPGLPT--RH-----QNVDIVVIRENTEGEYSGLEHEV-----VPGVVES 160 (359)
Q Consensus 98 ~~~-----~s~~~~LR~~ldlyanvRP~~~~pg~~~--~~-----~~iDivivREnteG~Y~g~~~~~-----~~~va~~ 160 (359)
++. +++++.||++||||+|+||||++||+++ |+ +++|+|||||||||+|+|.++.. .++++++
T Consensus 125 ~~~~~~~~e~~ll~LRk~ldLyaNvRPvr~~pg~~~~splk~~~~~~iD~vIVREnTEG~Y~G~~~~~~~~~~~~~~a~~ 204 (409)
T PLN02329 125 KNEKHLRPEMALFYLRRDLKVFANLRPATVLPQLVDASTLKKEVAEGVDMMIVRELTGGIYFGEPRGITINENGEEVGVS 204 (409)
T ss_pred CCcccccccccHHHHHHHcCCeEeeeeeeccCCCCCcCcccccccCCceEEEEEECCCCeecCCCcceecccCCceeEEE
Confidence 211 2569999999999999999999999986 44 58999999999999999987432 2458999
Q ss_pred EEeecHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHhhCCceeeceeeHhHHHHHHHhCCCCcc
Q 018224 161 LKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFD 240 (359)
Q Consensus 161 ~~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~eypdI~~~~~~vD~~~~~Lv~~P~~fd 240 (359)
+++|||+++|||+|+||+||++|+ ++||++||+|||+ +++||+++|+||+++||+|++++++||+++||||++|++||
T Consensus 205 ~~~iTr~~~eRI~r~AFe~A~~r~-~kVT~v~KaNVl~-t~~lf~~~~~evA~eyPdV~~~~~~VDa~a~~LV~~P~~FD 282 (409)
T PLN02329 205 TEIYAAHEIDRIARVAFETARKRR-GKLCSVDKANVLD-ASILWRKRVTALASEYPDVELSHMYVDNAAMQLIRDPKQFD 282 (409)
T ss_pred eEEecHHHHHHHHHHHHHHHHHcC-CeEEEEECCCCcc-chHHHHHHHHHHHhhCCCcccchhHHHHHHHHHhcCchhCC
Confidence 999999999999999999999984 6999999999999 99999999999999999999999999999999999999999
Q ss_pred EEEeCCcchhhHHHhhhhhcCCCCccceeeeCCC-cceEeccccCCCCCcccccccccCChhHHHHHHHHHHhh-cCCHH
Q 018224 241 VMVTPNLYGNLVSNTAAGIAGGTGVMPGGNVGAD-TAVFEQGASAGNVGNEKVVEQKKANPVALLLSSAMMLRH-LQFPS 318 (359)
Q Consensus 241 Viv~~NlfGDILSDlaa~l~GglGl~psanig~~-~a~FEp~~~~~HGsApdiaGk~~ANP~a~Ils~ammL~~-lg~~~ 318 (359)
||||+|||||||||++++++|||||+||+|||++ ++||||+ |||||||||||+|||+|+|||++|||+| ||+++
T Consensus 283 VIVt~NLfGDILSDlaa~l~GglGlaPSanig~~~~a~FEpv----HGSAPdIAGk~iANP~A~ILS~amML~~~Lg~~~ 358 (409)
T PLN02329 283 TIVTNNIFGDILSDEASMITGSIGMLPSASLGESGPGLFEPI----HGSAPDIAGQDKANPLATILSAAMLLKYGLGEEK 358 (409)
T ss_pred EEEEcCcccccccHHHHHhcCCcccCceeecCCCCceeeecc----CCCchhhcCCcccChHHHHHHHHHHHhhhCCCHH
Confidence 9999999999999999999999999999999987 6999999 9999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHcCcccCCCC---CCC-CcHHHHHHHHHHhc
Q 018224 319 FADRLETAVKRVISEEKYRTKDL---GGG-CTTQQIVDAVIANL 358 (359)
Q Consensus 319 ~A~~i~~Av~~~l~~g~~~T~Dl---gg~-~~T~e~~~av~~~l 358 (359)
+|++|++||.+++++| ++|+|| ||+ +||+||+|+|+++|
T Consensus 359 ~A~~I~~AV~~vl~~g-~~T~Dl~~~Gg~~~~T~e~~daIi~~l 401 (409)
T PLN02329 359 AAKRIEDAVVDALNKG-FRTGDIYSPGNKLVGCKEMGEEVLKSV 401 (409)
T ss_pred HHHHHHHHHHHHHHcC-CcCcccccCCCCccCHHHHHHHHHHHH
Confidence 9999999999999999 789999 776 89999999999987
No 14
>TIGR00169 leuB 3-isopropylmalate dehydrogenase. This model will not find all isopropylmalate dehydrogenases; the enzyme from Sulfolobus sp. strain 7 is more similar to mitochondrial NAD-dependent isocitrate dehydrogenases than to other known isopropylmalate dehydrogenases and was omitted to improve the specificity of the model. It scores below the cutoff and below some enzymes known not to be isopropylmalate dehydrogenase.
Probab=100.00 E-value=9e-109 Score=810.94 Aligned_cols=321 Identities=36% Similarity=0.545 Sum_probs=299.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHHc----CCCeeEEEEEecCc-cc----CCcHHHHHHHHhcCceeeccccCCCC-CCc
Q 018224 31 AVTLIPGDGIGPLVTNAVEQVMEAM----HAPIYFEKYEVHGD-MK----RVPQQVLDSIRKNKVCLKGGLKTPVG-GGV 100 (359)
Q Consensus 31 ~I~vi~GDGIGpEV~~~a~~vl~~~----~~~ie~~~~~~g~~-~~----~lp~et~~~~~~~da~l~G~~~~p~~-~~~ 100 (359)
+|++|||||||||||+++++||+++ +++++|+++++|.+ ++ .+|++++++|+++|++||||+++|.. ...
T Consensus 1 ~i~vipGDGIGpEV~~aa~~vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~l~G~v~~p~~~~~~ 80 (349)
T TIGR00169 1 KIAVLPGDGIGPEITAEALKVLKAVAERFGLKFEFEEHLIGGAAIDATGQPLPEETLKACKEADAVLLGAVGGPKWDNLP 80 (349)
T ss_pred CEEEECCCCccHHHHHHHHHHHHHHHhhcCCceEEEEEeCCHHHHHHHCCCCCHHHHHHHHHCCEEEECcccCCCCCCCC
Confidence 5999999999999999999999976 68999999999987 42 89999999999999999999999832 111
Q ss_pred -----ccchHHHHhhcCcEEEEEEeecCCCCCC--Cc-----ccccEEEEecCCcceEeccceeee----CCEEEEEEee
Q 018224 101 -----SSLNVQLRKELDLYAALVNCFNLPGLPT--RH-----QNVDIVVIRENTEGEYSGLEHEVV----PGVVESLKVI 164 (359)
Q Consensus 101 -----~s~~~~LR~~ldlyanvRP~~~~pg~~~--~~-----~~iDivivREnteG~Y~g~~~~~~----~~va~~~~~~ 164 (359)
.+.++.||++||||+|+||||++||+++ |+ +++|+|||||||||+|+|.+++.. +++++++++|
T Consensus 81 ~~~~~~~~~~~LR~~ldlyanvRP~r~~~g~~~~~p~~~~~~~~iD~vivREntEG~Y~g~~~~~~~~~~~~~a~~~~~~ 160 (349)
T TIGR00169 81 RDQRPEQGLLKLRKSLDLFANLRPAKVFPSLEDLSPLKEEIAKGVDFVVVRELTGGIYFGEPKGRFGAGGEGEAWDTEVY 160 (349)
T ss_pred ccccchhhHHHHHHHcCCeEEEEEeeccCCCCccCCCcccccCCceEEEEeeccCCeecCCCccccCCCCcceEEEEEEe
Confidence 2339999999999999999999999976 44 689999999999999999986332 3689999999
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHhhCCceeeceeeHhHHHHHHHhCCCCccEEEe
Q 018224 165 TKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVT 244 (359)
Q Consensus 165 Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~eypdI~~~~~~vD~~~~~Lv~~P~~fdViv~ 244 (359)
||+++|||+|+||+||++|+ ++||+|||+|+|+ ++++|+++|+||+++||+|++++++||+++|+||++|++||||||
T Consensus 161 Tr~~~eRI~r~AF~~A~~r~-~~Vt~v~KaNvlk-t~glf~~~~~eva~~yP~I~~~~~~vDa~~~~Lv~~P~~fDViv~ 238 (349)
T TIGR00169 161 TKPEIERIARVAFEMARKRR-KKVTSVDKANVLE-SSRLWRKTVEEIAKEYPDVELEHQYIDNAAMQLVKSPTQFDVVVT 238 (349)
T ss_pred eHHHHHHHHHHHHHHHHHcC-CcEEEEECCcccc-hhHHHHHHHHHHHhhCCCceEEeeeHHHHHHHHHhCccCceEEEE
Confidence 99999999999999999985 4999999999999 999999999999999999999999999999999999999999999
Q ss_pred CCcchhhHHHhhhhhcCCCCccceeeeCC-CcceEeccccCCCCCcccccccccCChhHHHHHHHHHHhh-cCCHHHHHH
Q 018224 245 PNLYGNLVSNTAAGIAGGTGVMPGGNVGA-DTAVFEQGASAGNVGNEKVVEQKKANPVALLLSSAMMLRH-LQFPSFADR 322 (359)
Q Consensus 245 ~NlfGDILSDlaa~l~GglGl~psanig~-~~a~FEp~~~~~HGsApdiaGk~~ANP~a~Ils~ammL~~-lg~~~~A~~ 322 (359)
+|||||||||++++++||+||+||+|+|+ +++||||+ |||||||||||+|||+|+|||++|||+| ||++++|++
T Consensus 239 ~NlfGDILSDlaa~l~GglGlapSanig~~~~a~FEp~----HGSAPdiAGk~iANP~a~IlS~amML~~~lg~~~~a~~ 314 (349)
T TIGR00169 239 GNIFGDILSDEASVIPGSLGMLPSASLGSDGFGLFEPV----HGSAPDIAGKGIANPIAQILSAAMMLRYSFNLEEAADA 314 (349)
T ss_pred cCcccchhhHHHHHhcCCCCCCceEEECCCCCEEEECC----CCChhHhcCCCCCChHHHHHHHHHHHHhcCCCHHHHHH
Confidence 99999999999999999999999999995 48999999 9999999999999999999999999999 899999999
Q ss_pred HHHHHHHHHHcCcccCCCCCCCCcHHHHHHHHHHhc
Q 018224 323 LETAVKRVISEEKYRTKDLGGGCTTQQIVDAVIANL 358 (359)
Q Consensus 323 i~~Av~~~l~~g~~~T~Dlgg~~~T~e~~~av~~~l 358 (359)
|++||++++++| ++|+||||+++|+||+++|++.|
T Consensus 315 i~~Av~~~l~~g-~~T~DlgG~~~t~e~t~av~~~~ 349 (349)
T TIGR00169 315 IEAAVKKVLAEG-YRTPDLGSSATTEVGTAEMGEEL 349 (349)
T ss_pred HHHHHHHHHHcC-CCccccCCCcchHHHHHHHHhcC
Confidence 999999999999 78999999999999999999865
No 15
>PRK06451 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=5.3e-108 Score=817.84 Aligned_cols=325 Identities=33% Similarity=0.558 Sum_probs=305.4
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHHHHHc---C----CCeeEEEEEecCc-cc----CCcHHHHHHHHhcCceeeccccCC
Q 018224 28 SPRAVTLIPGDGIGPLVTNAVEQVMEAM---H----APIYFEKYEVHGD-MK----RVPQQVLDSIRKNKVCLKGGLKTP 95 (359)
Q Consensus 28 ~~~~I~vi~GDGIGpEV~~~a~~vl~~~---~----~~ie~~~~~~g~~-~~----~lp~et~~~~~~~da~l~G~~~~p 95 (359)
+.+ |++|||||||||||+++++||+++ + ++|+|+++++|.+ ++ ++|++++++|+++|++||||+++|
T Consensus 23 ~~~-I~vipGDGIGpEV~~aa~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~GavgtP 101 (412)
T PRK06451 23 KPI-ILYVEGDGIGPEITHAAMKVINKAVEKAYGSDREIKWVEVLAGDKAEKLTGNRFPKESEELIEKYRVLLKGPLETP 101 (412)
T ss_pred CcE-EEEecCCcccHHHHHHHHHHHHHHHHhccCCCCceEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECcccCC
Confidence 335 999999999999999999999965 2 5899999999987 43 899999999999999999999999
Q ss_pred CCCCcccchHHHHhhcCcEEEEEEeecCCCCCCCc---ccccEEEEecCCcceEeccceee-------------------
Q 018224 96 VGGGVSSLNVQLRKELDLYAALVNCFNLPGLPTRH---QNVDIVVIRENTEGEYSGLEHEV------------------- 153 (359)
Q Consensus 96 ~~~~~~s~~~~LR~~ldlyanvRP~~~~pg~~~~~---~~iDivivREnteG~Y~g~~~~~------------------- 153 (359)
.+++++|+++.||+.||||+|+||||++||+++|+ +++|||||||||||+|+|.+++.
T Consensus 102 ~~~~~~s~~l~LRk~ldLyaNvRPvk~~pgl~sp~~~~~~iD~vIvREnTeG~Y~g~~~~~~~~~~~~~~~~~~~~~~~~ 181 (412)
T PRK06451 102 IGKGWKSINVAIRLMLDLYANIRPVKYIPGIESPLKNPEKIDLIIFRENTDDLYRGIEYPYDSEEAKKIRDFLRKELGVE 181 (412)
T ss_pred CCcCCcChhHHHHHHcCCeEeeceeecCCCCCCcccCcCCccEEEEEeccCCeeeccccccccccccccccccccccccc
Confidence 76678899999999999999999999999999987 68999999999999999998421
Q ss_pred -eCCEEEEEEeecHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHh-hCCc--------------
Q 018224 154 -VPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVAT-KYPS-------------- 217 (359)
Q Consensus 154 -~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~-eypd-------------- 217 (359)
.+++++++++|||.+++||+|+||+||++|++|+||+|||+|||++|||+|+++|+|+++ +|||
T Consensus 182 ~~~~~a~~~~~~t~~~~eRIar~AF~~A~~r~~kkVt~v~KaNVlk~t~glf~~~~~eva~~eypd~~~~~~~~~~~y~~ 261 (412)
T PRK06451 182 VEDDTGIGIKLISKFKTQRIARMAIKYAIDHKRKKVTIMHKGNVMKYTEGAFREWAYEVALKEFRDYVVTEEEVTKNYNG 261 (412)
T ss_pred cccceecceeeeeHHHHHHHHHHHHHHHHhcCCCcEEEEECCCccccchhhHHHHHHHHHHHhCCcccccccchhhcccc
Confidence 124678999999999999999999999999888999999999999999999999999986 8995
Q ss_pred ------eeeceeeHhHHHHHHHhCCCCccEEEeCCcchhhHHHhhhhhcCCCCccceeeeCCCcceEeccccCCCCCccc
Q 018224 218 ------IKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGGNVGADTAVFEQGASAGNVGNEK 291 (359)
Q Consensus 218 ------I~~~~~~vD~~~~~Lv~~P~~fdViv~~NlfGDILSDlaa~l~GglGl~psanig~~~a~FEp~~~~~HGsApd 291 (359)
|+++|++||++|||||++|++||||||+|||||||||++|+++||+||+||+|+|++.+||||+ ||||||
T Consensus 262 ~~~~~~I~~~~~~vDa~~~~Lv~~P~~FDVivt~NlfGDILSDlaa~l~GglGl~pSanig~~~alFEpv----HGSAPd 337 (412)
T PRK06451 262 VPPSGKVIINDRIADNMFQQIIIRPDEYDIILAPNVNGDYISDAAGALVGNIGMLGGANIGDTGGMFEAI----HGTAPK 337 (412)
T ss_pred ccccCceEEEeeeHHHHHHHHhcCcccCcEEEEcCcccchhhHHHHHhcCchhhcceeeeCCCCceeECC----CCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred ccccccCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHcCcccCCCC----CCC-CcHHHHHHHHHHhc
Q 018224 292 VVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEEKYRTKDL----GGG-CTTQQIVDAVIANL 358 (359)
Q Consensus 292 iaGk~~ANP~a~Ils~ammL~~lg~~~~A~~i~~Av~~~l~~g~~~T~Dl----gg~-~~T~e~~~av~~~l 358 (359)
|||||+|||+|+|||++|||+|||++++|++|++||.+++++| ++|+|| ||+ ++|+||+|+|+++|
T Consensus 338 iAGk~iANP~a~IlS~amML~~lg~~~~A~~I~~Av~~vl~~G-~~T~Dl~~~~gg~~~~T~e~~daI~~~l 408 (412)
T PRK06451 338 YAGKNVANPTGIIKGGELMLRFMGWDKAADLIDKAIMESIKQK-KVTQDLARFMGVRALSTTEYTDELISII 408 (412)
T ss_pred cCCCCCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcC-CcCccccccCCCCccCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999 689999 555 79999999999986
No 16
>PRK00772 3-isopropylmalate dehydrogenase; Provisional
Probab=100.00 E-value=1.2e-107 Score=804.73 Aligned_cols=323 Identities=37% Similarity=0.574 Sum_probs=303.5
Q ss_pred cceEEEEcCCCCcHHHHHHHHHHHHHc----CCCeeEEEEEecCc-cc----CCcHHHHHHHHhcCceeeccccCCC-C-
Q 018224 29 PRAVTLIPGDGIGPLVTNAVEQVMEAM----HAPIYFEKYEVHGD-MK----RVPQQVLDSIRKNKVCLKGGLKTPV-G- 97 (359)
Q Consensus 29 ~~~I~vi~GDGIGpEV~~~a~~vl~~~----~~~ie~~~~~~g~~-~~----~lp~et~~~~~~~da~l~G~~~~p~-~- 97 (359)
+++|++|||||||||||+++++||+++ +++++|+++++|.+ ++ .+|++++++|+++|++||||+++|. +
T Consensus 2 ~~~I~vipGDGIGpEV~~aa~~vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~L~Gav~~p~~~~ 81 (358)
T PRK00772 2 TYKIAVLPGDGIGPEVMAEAVKVLDAVAEKFGFDFEFEEALVGGAAIDAHGVPLPEETLEACRAADAVLLGAVGGPKWDN 81 (358)
T ss_pred ceEEEEECCCcccHHHHHHHHHHHHHHHhhcCCceEEEEecCcHHHHHHHCCCCCHHHHHHHHHCCEEEECccCCCCCCC
Confidence 379999999999999999999999976 78999999999987 42 8999999999999999999999983 1
Q ss_pred -----CCcccchHHHHhhcCcEEEEEEeecCCCCCC--Cc-----ccccEEEEecCCcceEeccceeee----CCEEEEE
Q 018224 98 -----GGVSSLNVQLRKELDLYAALVNCFNLPGLPT--RH-----QNVDIVVIRENTEGEYSGLEHEVV----PGVVESL 161 (359)
Q Consensus 98 -----~~~~s~~~~LR~~ldlyanvRP~~~~pg~~~--~~-----~~iDivivREnteG~Y~g~~~~~~----~~va~~~ 161 (359)
.+.+| ++.||+.||||+|+||||++||+++ |+ +++|+|||||||||+|+|.+++.. +++++++
T Consensus 82 ~~~~~~~~~~-~~~LR~~ldlyanvRP~r~~pg~~~~~plk~~~~~~iD~vivREntEG~Y~g~~~~~~~~~~~~~a~~~ 160 (358)
T PRK00772 82 LPPDVRPERG-LLALRKELGLFANLRPAKLYPGLADASPLKPEIVAGLDILIVRELTGGIYFGEPRGREGLGGEERAFDT 160 (358)
T ss_pred CCccCCChhh-HHHHHHHcCCeEEEeEeecCCCCCCcCCCcccccCCccEEEEecccCCeecCCcccccCCCCceeEEEE
Confidence 14456 9999999999999999999999986 65 389999999999999999986542 3578999
Q ss_pred EeecHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHhhCCceeeceeeHhHHHHHHHhCCCCccE
Q 018224 162 KVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDV 241 (359)
Q Consensus 162 ~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~eypdI~~~~~~vD~~~~~Lv~~P~~fdV 241 (359)
++|||++++||+|+||+||++| +++||++||+|+|+ ++|+|+++|+||+++||+|++++++||+++|+||++|++|||
T Consensus 161 ~~iTr~~~~Ri~r~Af~~A~~r-~~~Vt~v~KaNvl~-~~glf~~~~~eva~eyp~i~~~~~~vDa~~~~lv~~P~~fDV 238 (358)
T PRK00772 161 MVYTREEIERIARVAFELARKR-RKKVTSVDKANVLE-SSRLWREVVTEVAKEYPDVELSHMYVDNAAMQLVRNPKQFDV 238 (358)
T ss_pred EEeeHHHHHHHHHHHHHHHHHc-CCcEEEEECccccc-cchHHHHHHHHHHhHCCCceEEEEeHHHHHHHHhhCcccCeE
Confidence 9999999999999999999998 46999999999999 899999999999999999999999999999999999999999
Q ss_pred EEeCCcchhhHHHhhhhhcCCCCccceeeeCCC-cceEeccccCCCCCcccccccccCChhHHHHHHHHHHhh-cCCHHH
Q 018224 242 MVTPNLYGNLVSNTAAGIAGGTGVMPGGNVGAD-TAVFEQGASAGNVGNEKVVEQKKANPVALLLSSAMMLRH-LQFPSF 319 (359)
Q Consensus 242 iv~~NlfGDILSDlaa~l~GglGl~psanig~~-~a~FEp~~~~~HGsApdiaGk~~ANP~a~Ils~ammL~~-lg~~~~ 319 (359)
|||+|||||||||++++++||+||+||+|||++ .+||||+ |||||||||||+|||+|+|||++|||+| ||++++
T Consensus 239 iv~~NlfGDIlSDlaa~l~GglGl~psanig~~~~a~FEp~----HGSApdiAGk~~aNP~a~Ils~ammL~~~lg~~~~ 314 (358)
T PRK00772 239 IVTENLFGDILSDEAAMLTGSLGMLPSASLGESGPGLYEPI----HGSAPDIAGKGIANPIATILSAAMMLRYSLGLEEA 314 (358)
T ss_pred EeecCcccccccHHHHHhcCCCCCCcceEeCCCCceeeecC----CCchhhhcCCCCcCCHHHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999999999999999976 6999999 9999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHcCcccCCCC---CCCCcHHHHHHHHHHhcC
Q 018224 320 ADRLETAVKRVISEEKYRTKDL---GGGCTTQQIVDAVIANLD 359 (359)
Q Consensus 320 A~~i~~Av~~~l~~g~~~T~Dl---gg~~~T~e~~~av~~~l~ 359 (359)
|++|++||.+++++| ++|+|| ||++||+||+|+|+++|+
T Consensus 315 a~~i~~Av~~~l~~g-~~T~Dl~~~gg~~~T~e~~~av~~~l~ 356 (358)
T PRK00772 315 ADAIEAAVEKVLAQG-YRTADIAEGGGKVSTSEMGDAILAALA 356 (358)
T ss_pred HHHHHHHHHHHHHcC-CcCcccccCCCCcCHHHHHHHHHHHhh
Confidence 999999999999999 789999 899999999999999873
No 17
>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases. This family is closely related to both the LeuB genes found in TIGR00169 and the mitochondrial eukaryotic isocitrate dehydratases found in TIGR00175. All of these are included within the broader subfamily model, pfam00180.
Probab=100.00 E-value=2.1e-107 Score=793.72 Aligned_cols=316 Identities=41% Similarity=0.653 Sum_probs=303.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEecCc-cc----CCcHHHHHHHHhcCceeeccccCCCCCCcccchHH
Q 018224 32 VTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGD-MK----RVPQQVLDSIRKNKVCLKGGLKTPVGGGVSSLNVQ 106 (359)
Q Consensus 32 I~vi~GDGIGpEV~~~a~~vl~~~~~~ie~~~~~~g~~-~~----~lp~et~~~~~~~da~l~G~~~~p~~~~~~s~~~~ 106 (359)
|++|||||||||||+++++||++.+++++|+++++|.+ ++ ++|++++++|+++|++||||+++|..++++|+++.
T Consensus 1 i~~ipGDGIGpEv~~~a~~vl~~~~~~i~~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~l~Gavg~p~~~~~~s~~~~ 80 (322)
T TIGR02088 1 VAVIPGDGIGPEVIEAAIRILNKLGLEIEFIEFEAGDEALKKYGSALPEDTLEEIRKADAILFGAVTTPANPGYKSVIVT 80 (322)
T ss_pred CEEeCCCCccHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHhCCCCCHHHHHHHHHCCEEEECcccCCCCCCccChHHH
Confidence 68999999999999999999999999999999999987 43 89999999999999999999999976678899999
Q ss_pred HHhhcCcEEEEEEeecCCCCCCCcc-cccEEEEecCCcceEeccceeeeCCEEEEEEeecHHHHHHHHHHHHHHHHhcCC
Q 018224 107 LRKELDLYAALVNCFNLPGLPTRHQ-NVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNYR 185 (359)
Q Consensus 107 LR~~ldlyanvRP~~~~pg~~~~~~-~iDivivREnteG~Y~g~~~~~~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~~ 185 (359)
||++||||+|+||||++||++++++ ++|+|||||||||+|+|.++. .++++++++++||+++|||+|+||+||++|++
T Consensus 81 LR~~ldlyanvRP~r~~~g~~~~~~~~iD~vivREnteG~Y~g~~~~-~~~~a~~~~~~tr~~~eRi~r~AF~~A~~r~~ 159 (322)
T TIGR02088 81 LRKELDLYANVRPAKSLPGIPDLYPNGKDIVIVRENTEGLYAGFEFG-FSDRAIAIRVITREGSERIARFAFNLAKERNR 159 (322)
T ss_pred HHHHcCCEEEEEEeeccCCCCCCCCCCCCEEEEEeCcCCeeeccccc-cCcceEEEEEecHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999886 999999999999999999865 35689999999999999999999999999854
Q ss_pred CcEEEEEcCCchhhchHHHHHHHHHHHhhCCceeeceeeHhHHHHHHHhCCCCccEEEeCCcchhhHHHhhhhhcCCCCc
Q 018224 186 KKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGV 265 (359)
Q Consensus 186 ~~Vt~v~KaNvl~~tdglf~~~~~eva~eypdI~~~~~~vD~~~~~Lv~~P~~fdViv~~NlfGDILSDlaa~l~GglGl 265 (359)
|||++||+|||+.++|||+++|+||+++|| |+++|++||++|||||++|++||||||+|||||||||++|+++||+||
T Consensus 160 -~Vt~v~KaNvl~~t~glf~~~~~eva~~yp-v~~~~~~vDa~~~~lv~~P~~fdViv~~NlfGDIlSDlaa~l~GglGl 237 (322)
T TIGR02088 160 -KVTCVHKANVLKGTDGLFREVCREIAKRYG-VEYRDMYVDSAAMNLVKDPWRFDVIVTTNMFGDILSDLASALAGSLGL 237 (322)
T ss_pred -cEEEEeCCcchhhhHHHHHHHHHHHHHhCC-eeeeeeeHHHHHHHHhhCCcCceEEEecCcccchhhHHHHhhcCCCCC
Confidence 699999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred cceeeeCCCcceEeccccCCCCCcccccccccCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHcCcccCCCCCCCC
Q 018224 266 MPGGNVGADTAVFEQGASAGNVGNEKVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEEKYRTKDLGGGC 345 (359)
Q Consensus 266 ~psanig~~~a~FEp~~~~~HGsApdiaGk~~ANP~a~Ils~ammL~~lg~~~~A~~i~~Av~~~l~~g~~~T~Dlgg~~ 345 (359)
+||+|+|++++||||. |||||||+|||+|||+|+|+|++|||+|||++++|++|++||++++++| ++|+||||++
T Consensus 238 ~pSanig~~~a~fep~----hGsa~diaG~~~aNp~a~i~A~~~~l~~~g~~~~a~~i~~Av~~~l~~g-~~T~DlgG~~ 312 (322)
T TIGR02088 238 APSANIGDRKALFEPV----HGSAPDIAGKGIANPTAAILSVAMMLDYLGELEKGKLVWEAVEYYIIEG-KKTPDLGGTA 312 (322)
T ss_pred CceeEEcCCceEEecC----CCChhHhCCCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcC-CCCcccCCCc
Confidence 9999999999999999 9999999999999999999999999999999999999999999999999 6899999999
Q ss_pred cHHHHHHHHH
Q 018224 346 TTQQIVDAVI 355 (359)
Q Consensus 346 ~T~e~~~av~ 355 (359)
||+||+|+|+
T Consensus 313 ~T~e~~~av~ 322 (322)
T TIGR02088 313 KTKEVGDEIA 322 (322)
T ss_pred CHHHHHHHhC
Confidence 9999999985
No 18
>PRK07006 isocitrate dehydrogenase; Reviewed
Probab=100.00 E-value=3.4e-107 Score=812.85 Aligned_cols=325 Identities=36% Similarity=0.577 Sum_probs=303.5
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHHHHHc---C----CCeeEEEEEecCc-c----c--CCcHHHHHHHHhcCceeecccc
Q 018224 28 SPRAVTLIPGDGIGPLVTNAVEQVMEAM---H----APIYFEKYEVHGD-M----K--RVPQQVLDSIRKNKVCLKGGLK 93 (359)
Q Consensus 28 ~~~~I~vi~GDGIGpEV~~~a~~vl~~~---~----~~ie~~~~~~g~~-~----~--~lp~et~~~~~~~da~l~G~~~ 93 (359)
+++ |++|||||||||||+++++||+++ + ++++|+++++|.+ + . ++|++++++|+++|++||||++
T Consensus 19 ~~~-I~vipGDGIGpEV~~aa~~vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~~~lp~~tl~~~~~~da~l~G~i~ 97 (409)
T PRK07006 19 NPI-IPFIEGDGIGPDITPAMLKVVDAAVEKAYKGERKISWMEIYAGEKATKVYGEDVWLPEETLDLIREYRVAIKGPLT 97 (409)
T ss_pred CcE-EEEeCCCcccHHHHHHHHHHHHHHHHhccCCCCceEEEEEecCHHHHHhhCCcCCCCHHHHHHHHHCCEEEECccc
Confidence 335 999999999999999999999965 2 4899999988886 4 3 7999999999999999999999
Q ss_pred CCCCCCcccchHHHHhhcCcEEEEEEeecCCCCCCCc---ccccEEEEecCCcceEeccceee-----------------
Q 018224 94 TPVGGGVSSLNVQLRKELDLYAALVNCFNLPGLPTRH---QNVDIVVIRENTEGEYSGLEHEV----------------- 153 (359)
Q Consensus 94 ~p~~~~~~s~~~~LR~~ldlyanvRP~~~~pg~~~~~---~~iDivivREnteG~Y~g~~~~~----------------- 153 (359)
+|.+.+++|+++.||++||||+|+||||++||+++|+ +++|||||||||||+|+|.++..
T Consensus 98 tp~~~~~~s~~l~LR~~ldLyaNvRPvk~~pgl~~plk~~~~iD~vIvREnteG~Y~g~~~~~~~~~~~~~~~~~~~~~~ 177 (409)
T PRK07006 98 TPVGGGIRSLNVALRQELDLYVCLRPVRYFKGVPSPVKRPEDTDMVIFRENSEDIYAGIEWKAGSAEAKKVIKFLQEEMG 177 (409)
T ss_pred CCCCcCccChHHHHHHHcCCEEEEEEEecCCCCCCCCCCCCCCCEEEEEeccCCeecccccccCCcccceeeeccccccC
Confidence 9976667899999999999999999999999999987 68999999999999999997421
Q ss_pred ------eCCEEEEEEeecHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHh-hC-----------
Q 018224 154 ------VPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVAT-KY----------- 215 (359)
Q Consensus 154 ------~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~-ey----------- 215 (359)
..+.++++++|||+++|||+|+||+||++|++|+||++||+||||+|||+|++|+.||++ +|
T Consensus 178 ~~~~~~~~~~a~~~~v~Tr~~~eRi~r~AFe~A~~r~rkkVt~v~KaNVlk~tdglf~~~~~eva~~ey~~~~~~~~~~~ 257 (409)
T PRK07006 178 VKKIRFPETSGIGIKPVSEEGTERLVRAAIEYAIDNDRKSVTLVHKGNIMKFTEGAFKDWGYQLAEEEFGDELIDGGPWD 257 (409)
T ss_pred cccccccccceEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECCCccccchHHHHHHHHHHHHHHhhhhhhcccccc
Confidence 123578999999999999999999999999888999999999999999999998889987 68
Q ss_pred --------CceeeceeeHhHHHHHHHhCCCCccEEEeCCcchhhHHHhhhhhcCCCCccceeeeCCCcceEeccccCCCC
Q 018224 216 --------PSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGGNVGADTAVFEQGASAGNV 287 (359)
Q Consensus 216 --------pdI~~~~~~vD~~~~~Lv~~P~~fdViv~~NlfGDILSDlaa~l~GglGl~psanig~~~a~FEp~~~~~HG 287 (359)
|+|++++++||++|||||++|++||||||+|||||||||++|+++||+||+||+|+|++++||||+ ||
T Consensus 258 ~~~~~~~~p~v~~~~~~vDa~~~~lv~~P~~fDVIvt~NlfGDILSDlaa~l~GglGlapSanig~~~a~FEpv----HG 333 (409)
T PRK07006 258 KIKNPETGKEIIVKDSIADAFLQQILLRPAEYDVIATMNLNGDYISDALAAQVGGIGIAPGANINDGHAIFEAT----HG 333 (409)
T ss_pred ccccccCCCCceeehHHHHHHHHHHhhCcccCcEEEEcCcccchhhHHHHHhcCchhhcccceeCCCceEEECC----CC
Confidence 899999999999999999999999999999999999999999999999999999999889999999 99
Q ss_pred CcccccccccCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHcCcccCCCC-----CCC-CcHHHHHHHHHHhc
Q 018224 288 GNEKVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEEKYRTKDL-----GGG-CTTQQIVDAVIANL 358 (359)
Q Consensus 288 sApdiaGk~~ANP~a~Ils~ammL~~lg~~~~A~~i~~Av~~~l~~g~~~T~Dl-----gg~-~~T~e~~~av~~~l 358 (359)
|||||||||+|||+|+|||++|||+|||++++|++|++||.+++++| ++|+|| ||+ ++|+||+|+|+++|
T Consensus 334 SAPdiAGk~iANP~a~IlS~amML~~lG~~~~A~~Ie~Av~~~l~~G-~~T~Dl~~~~~gg~~~~T~e~~daI~~~l 409 (409)
T PRK07006 334 TAPKYAGLDKVNPGSVILSAEMMLRHMGWTEAADLIIKSMEKTIASK-TVTYDFARLMEGATEVKCSEFGDALIKNM 409 (409)
T ss_pred cchhhCCCCCcChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC-CccccccccCCCCcccCHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999 789999 445 79999999999876
No 19
>TIGR00183 prok_nadp_idh isocitrate dehydrogenase, NADP-dependent, prokaryotic type. Prokaryotic NADP-dependent isocitrate dehydrogenases resemble their NAD-dependent counterparts and 3-isopropylmalate dehydrogenase (an NAD-dependent enzyme) more closely than they resemble eukaryotic NADP-dependent isocitrate dehydrogenases.
Probab=100.00 E-value=4.8e-106 Score=807.33 Aligned_cols=322 Identities=36% Similarity=0.585 Sum_probs=301.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHcC-------CCeeEEEEEecCc-c------cCCcHHHHHHHHhcCceeeccccCCCC
Q 018224 32 VTLIPGDGIGPLVTNAVEQVMEAMH-------APIYFEKYEVHGD-M------KRVPQQVLDSIRKNKVCLKGGLKTPVG 97 (359)
Q Consensus 32 I~vi~GDGIGpEV~~~a~~vl~~~~-------~~ie~~~~~~g~~-~------~~lp~et~~~~~~~da~l~G~~~~p~~ 97 (359)
|+||||||||||||+++++||+++. ++++|+++++|++ + .++|++++++|+++|++||||+++|.+
T Consensus 29 I~vipGDGIGpEv~~~a~~vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~~~lp~~tl~~~~~~da~l~Ga~~tp~~ 108 (416)
T TIGR00183 29 IPYIEGDGIGVDVTPAAIKVLDAAVEKAYKGEKKIVWFEVYAGEKAYQLYGQDQWLPADTLDAIKEYRVAIKGPLTTPVG 108 (416)
T ss_pred EEEeCCCcccHHHHHHHHHHHHHHHHhccCCCCceEEEEEecCHHHHHHhCCCCCCCHHHHHHHHHCCEEEECcccCCCC
Confidence 9999999999999999999999652 4899999998875 3 279999999999999999999999966
Q ss_pred CCcccchHHHHhhcCcEEEEEEeecCCCCCCCc---ccccEEEEecCCcceEeccceee---------------------
Q 018224 98 GGVSSLNVQLRKELDLYAALVNCFNLPGLPTRH---QNVDIVVIRENTEGEYSGLEHEV--------------------- 153 (359)
Q Consensus 98 ~~~~s~~~~LR~~ldlyanvRP~~~~pg~~~~~---~~iDivivREnteG~Y~g~~~~~--------------------- 153 (359)
.+++|+++.||+.||||+|+||||++||+++|+ +++|||||||||||+|+|.++..
T Consensus 109 ~~~~s~~l~LR~~ldLyaNvRP~k~~pgl~s~~~~~~~vDivIvREnteG~Y~g~~~~~~~~~~~~~~~~~~~~~g~~~~ 188 (416)
T TIGR00183 109 GGIRSLNVALRQELDLYVCLRPVRYYKGVPSPVKHPEKVDMVIFRENTEDIYAGIEWAEGSEEAKKLIRFLQNELGVKKI 188 (416)
T ss_pred ccccCcHHHHHHHcCCEEEEeEeecCCCCCCcCCCCCCCCEEEEEeCCCCcccccccccCcccceeeecccccccCcccc
Confidence 667899999999999999999999999999987 68999999999999999987320
Q ss_pred --eCCEEEEEEeecHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHh-hC---------------
Q 018224 154 --VPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVAT-KY--------------- 215 (359)
Q Consensus 154 --~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~-ey--------------- 215 (359)
.+++++++++|||++++||+|+||+||++|++++||++||+||||.+||+|++++.||++ +|
T Consensus 189 ~~~~~~a~~~~~~tr~~~~Riar~AFe~A~~r~rk~Vt~v~KaNvlk~tdglf~e~~~eva~~ey~~~~~~~~lw~~~~~ 268 (416)
T TIGR00183 189 RFPEDSGIGIKPISEEGTKRLVRAAIEYAIENDRKSVTLVHKGNIMKFTEGAFRDWGYELAKKEFGAECITWGLWDKYKN 268 (416)
T ss_pred ccccccEEEEEEecHHHHHHHHHHHHHHHHhcCCCeEEEEECCCccccchhhHHHHHHHHHHHHHhHhhhhccccccccC
Confidence 134678999999999999999999999999778999999999999999999999889988 57
Q ss_pred ----CceeeceeeHhHHHHHHHhCCCCccEEEeCCcchhhHHHhhhhhcCCCCccceeeeCCCcceEeccccCCCCCccc
Q 018224 216 ----PSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGGNVGADTAVFEQGASAGNVGNEK 291 (359)
Q Consensus 216 ----pdI~~~~~~vD~~~~~Lv~~P~~fdViv~~NlfGDILSDlaa~l~GglGl~psanig~~~a~FEp~~~~~HGsApd 291 (359)
|+|+++|++||+++||||++|++||||||+|||||||||++|+++||+||+||+|+|++.+||||+ ||||||
T Consensus 269 p~~~p~I~~~~~~vDa~~~~lv~~P~~fDVivt~NlfGDILSDlaa~l~GslGlapSanig~~~alFEp~----HGSAPd 344 (416)
T TIGR00183 269 PNPGKEIVIKDRIADAFLQQILTRPDEYDVIATMNLNGDYISDALAAQVGGIGIAPGANIGDEIGIFEAT----HGTAPK 344 (416)
T ss_pred cccCCceeEeehhHHHHHHHHhhCcccCcEEEEcCcccchhhHHHHHhcCchhhcceeeeCCCceEEECC----CCCchh
Confidence 499999999999999999999999999999999999999999999999999999999989999999 999999
Q ss_pred ccccccCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHcCcccCCCC----CC-C-CcHHHHHHHHHHhc
Q 018224 292 VVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEEKYRTKDL----GG-G-CTTQQIVDAVIANL 358 (359)
Q Consensus 292 iaGk~~ANP~a~Ils~ammL~~lg~~~~A~~i~~Av~~~l~~g~~~T~Dl----gg-~-~~T~e~~~av~~~l 358 (359)
|||||+|||+|+|||++|||+|||++++|++|++||.+++++| ++|+|| || + +||+||+|+|+++|
T Consensus 345 iAGk~iANP~a~IlS~amML~~lg~~~~A~~Ie~AV~~~l~~G-~~T~Dl~~~~gg~~~~~T~e~~daI~~~l 416 (416)
T TIGR00183 345 YAGQDKVNPGSIILSGEMMLEHMGWKEAADLIKKAMEKAIASK-IVTYDFARLMDGAKEVKCSEFAEAIIENM 416 (416)
T ss_pred hcCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcC-CcccccccccCCCcccCHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999 789999 55 4 89999999999876
No 20
>PRK07362 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=5.6e-106 Score=803.01 Aligned_cols=323 Identities=34% Similarity=0.549 Sum_probs=300.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHHc---C----CCeeEEEEEecCc-cc------CCcHHHHHHHHhcCceeeccccCCC
Q 018224 31 AVTLIPGDGIGPLVTNAVEQVMEAM---H----APIYFEKYEVHGD-MK------RVPQQVLDSIRKNKVCLKGGLKTPV 96 (359)
Q Consensus 31 ~I~vi~GDGIGpEV~~~a~~vl~~~---~----~~ie~~~~~~g~~-~~------~lp~et~~~~~~~da~l~G~~~~p~ 96 (359)
.|++|||||||||||+++++||+++ + ++|+|.++++|.+ ++ ++|++|+++|+++|++||||+++|.
T Consensus 30 ~I~vIpGDGIGpEI~~aa~kVL~a~~~~~~~~~~~i~~~~~~~G~~a~~~~G~~~~lP~etle~i~~~da~L~Gpi~tP~ 109 (474)
T PRK07362 30 IIPFIRGDGTGVDIWPATQKVLDAAVAKAYGGERKINWFKVYAGDEACDLYGTYQYLPEDTLEAIREYGVAIKGPLTTPI 109 (474)
T ss_pred EEEEeCCCcccHHHHHHHHHHHHHHHHhccCCCCCeEEEEEccCHHHHHHhCCCCCCCHHHHHHHHHCCEEEECcccCCC
Confidence 3999999999999999999999965 2 4899999988876 32 5999999999999999999999997
Q ss_pred CCCcccchHHHHhhcCcEEEEEEeecCCCCCCCc---ccccEEEEecCCcceEeccceee--------------------
Q 018224 97 GGGVSSLNVQLRKELDLYAALVNCFNLPGLPTRH---QNVDIVVIRENTEGEYSGLEHEV-------------------- 153 (359)
Q Consensus 97 ~~~~~s~~~~LR~~ldlyanvRP~~~~pg~~~~~---~~iDivivREnteG~Y~g~~~~~-------------------- 153 (359)
+.+++|.++.||+.||||+|+||||++||+++|+ .++|+|||||||||+|+|.+++.
T Consensus 110 ~~g~~s~~l~LRk~ldLyaNvRPvr~~pgl~sp~k~~~~iD~vIvRENTEGlY~G~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (474)
T PRK07362 110 GGGIRSLNVALRQIFDLYSCVRPCRYYAGTPSPHKNPEKLDVIVYRENTEDIYMGIEWEAGDEIGDKLIKHLNEEVIPAS 189 (474)
T ss_pred CcCccchHHHHHHHcCCceeeeEeeccCCCCCcccCCCCCCEEEEEECCCceecccccccccccchhccccccccccccc
Confidence 6678899999999999999999999999999998 58999999999999999997431
Q ss_pred --------eCCEEEEEEeecHHHHHHHHHHHHHHHHhc--CCCcEEEEEcCCchhhchHHHHHHHHHHHh-h--------
Q 018224 154 --------VPGVVESLKVITKFCSERIAKYAFEYAYLN--YRKKVTAVHKANIMKLADGLFLESCREVAT-K-------- 214 (359)
Q Consensus 154 --------~~~va~~~~~~Tr~~~eRiar~AFe~A~~r--~~~~Vt~v~KaNvl~~tdglf~~~~~eva~-e-------- 214 (359)
..++++++++|||++++||+|+||+||++| ++++||+|||+||||+++|+|++|+.|+|+ +
T Consensus 190 ~~~~~~~~~~~~a~~~k~iTr~g~eRI~r~AFe~A~~r~~~rkkVT~VhKaNVlk~t~glf~~~~~evA~~~~~~~~v~~ 269 (474)
T PRK07362 190 PELGKRQIPLGSGIGIKPVSKTGSQRHIRRAIEHALRLPGDKRHVTLVHKGNIMKYTEGAFRDWGYELATTEFRDECVTE 269 (474)
T ss_pred ccccccccccceeeeeeeccHHHHHHHHHHHHHHHHhcCCCCCeEEEEECCcccccchhHHHHHHHHHHHHhhhhhhhhh
Confidence 123678999999999999999999999998 468899999999999999999998889986 3
Q ss_pred -----------CCc------------------------------------------------eeeceeeHhHHHHHHHhC
Q 018224 215 -----------YPS------------------------------------------------IKYNEIIVDNCCMQLVSK 235 (359)
Q Consensus 215 -----------ypd------------------------------------------------I~~~~~~vD~~~~~Lv~~ 235 (359)
||+ |++++++||+++||||++
T Consensus 270 ~~~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vDa~a~~lv~~ 349 (474)
T PRK07362 270 RESWILSNKEKNPNISIEDNARMIEPGYDSLTPEKKAAICAEVKEVLDSIWSSHGNGKWKEKVLVDDRIADSIFQQIQTR 349 (474)
T ss_pred hhhhhhcccccCccccccccccccccccccccccccccccccccccccchhhccccccCCCcceeehHHHHHHHHHHHhC
Confidence 454 778999999999999999
Q ss_pred CCCccEEEeCCcchhhHHHhhhhhcCCCCccceeeeCCCcceEeccccCCCCCcccccccccCChhHHHHHHHHHHhhcC
Q 018224 236 PEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGGNVGADTAVFEQGASAGNVGNEKVVEQKKANPVALLLSSAMMLRHLQ 315 (359)
Q Consensus 236 P~~fdViv~~NlfGDILSDlaa~l~GglGl~psanig~~~a~FEp~~~~~HGsApdiaGk~~ANP~a~Ils~ammL~~lg 315 (359)
|++||||||+|||||||||++|+++||+||+||+|+|++.+||||+ |||||||||||+|||+|+|||++|||+|||
T Consensus 350 P~~FDVIVt~NLfGDILSDlaA~lvGglGlaPSANiG~~~a~FEpv----HGSAPdIAGk~iANP~A~ILS~aMML~~LG 425 (474)
T PRK07362 350 PQEYSILATLNLNGDYISDAAAAIVGGLGMAPGANIGDNAAIFEAT----HGTAPKHAGLDRINPGSVILSGVMMLEYLG 425 (474)
T ss_pred hhhCCEEEEccccchhhhHHHHHhcCCccccceeeeCCCceeeecC----CCCchhhcCCCCcCcHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCcccCCCCC-------CCCcHHHHHHHHHHhc
Q 018224 316 FPSFADRLETAVKRVISEEKYRTKDLG-------GGCTTQQIVDAVIANL 358 (359)
Q Consensus 316 ~~~~A~~i~~Av~~~l~~g~~~T~Dlg-------g~~~T~e~~~av~~~l 358 (359)
++++|++|++||.+++++| .+|+||| |.+||+||+++|++++
T Consensus 426 ~~~~A~~I~~AV~~vl~~g-~~T~Dlg~~~~~~~~~~sT~E~~~aIi~~~ 474 (474)
T PRK07362 426 WQEAADLITKGLSAAIANK-QVTYDLARLMEPPVDPLSCSEFAEAIISHF 474 (474)
T ss_pred CHHHHHHHHHHHHHHHHcC-CcccCCCCccccCCCCcCHHHHHHHHHhcC
Confidence 9999999999999999999 6899999 5789999999999864
No 21
>KOG0784 consensus Isocitrate dehydrogenase, gamma subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=2.9e-105 Score=764.71 Aligned_cols=346 Identities=65% Similarity=0.988 Sum_probs=332.2
Q ss_pred HhhhhcccccCCCCCCCCcceEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEecCc---ccCCcHHHHHHHHhcCce
Q 018224 11 SLIQTRSVTYMPRPGDGSPRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGD---MKRVPQQVLDSIRKNKVC 87 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~I~vi~GDGIGpEV~~~a~~vl~~~~~~ie~~~~~~g~~---~~~lp~et~~~~~~~da~ 87 (359)
+..+.+|++.+|+++|+++++|++|||||||||++.++.+|+++.++|++|+++++++. ....++|.++++++++++
T Consensus 24 ~~~~~~~~~~~p~~kygg~~tVTlipGdGIGpe~~~~V~~v~~a~~~PV~fE~i~v~~~~~~~~~~~~e~v~Si~rNkVa 103 (375)
T KOG0784|consen 24 SRARAAPVTVLPPAKYGGRHTVTLIPGDGIGPELTNAVREVFSAAHAPVEFEEIEVSGSNKESSEDLDEAVESIKRNKVA 103 (375)
T ss_pred hcccccccccCCCcccCCcceEEEeCCCCcCHHHHHHHHHHHHhcCCCeeEEEEEccCCccccchhHHHHHHHHHhccee
Confidence 33444688899999999999999999999999999999999999999999999999963 225799999999999999
Q ss_pred eeccccCCCC-CCcccchHHHHhhcCcEEEEEEeecCCCCCCCcccccEEEEecCCcceEeccceeeeCCEEEEEEeecH
Q 018224 88 LKGGLKTPVG-GGVSSLNVQLRKELDLYAALVNCFNLPGLPTRHQNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITK 166 (359)
Q Consensus 88 l~G~~~~p~~-~~~~s~~~~LR~~ldlyanvRP~~~~pg~~~~~~~iDivivREnteG~Y~g~~~~~~~~va~~~~~~Tr 166 (359)
|||.+.||.. ++..|.|..||++||||||+-.|+++||++++++++|++||||||||+|+|.||++.+|++++++++|+
T Consensus 104 lkG~i~t~~~~g~~~s~n~~LR~~LDLyanvv~~~slpG~~tRh~~vDiviIRENTEGEYs~LEHE~VpGVVEsLKVvT~ 183 (375)
T KOG0784|consen 104 LKGNIETPDLPGGAKSLNVKLRKELDLYANVVHCKSLPGVKTRHENVDIVIIRENTEGEYSGLEHESVPGVVESLKVVTR 183 (375)
T ss_pred EeecccCCCCccchhhhHHHHHHhhhhhhheeeeeccCCcccccCCccEEEEecCCcccccccccccCcchhheeeeehh
Confidence 9999999943 477899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHhhCCceeeceeeHhHHHHHHHhCCCCccEEEeCC
Q 018224 167 FCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPN 246 (359)
Q Consensus 167 ~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~eypdI~~~~~~vD~~~~~Lv~~P~~fdViv~~N 246 (359)
+.+|||+||||+||.++||||||.|||+|+||.+||||+++|+||++.||+|+++.|+||++|||||++|++|||+|+||
T Consensus 184 ~kseRIaryAF~yA~k~gRKkVTaVHKAnimKL~DGlFle~~~eva~~Yp~I~~e~miVDN~~MQlvs~P~qFDvmv~pn 263 (375)
T KOG0784|consen 184 FKSERIARYAFEYAKKNGRKKVTAVHKANIMKLGDGLFLESCQEVAKKYPDITFEEMIVDNACMQLVSRPQQFDVMVMPN 263 (375)
T ss_pred hhhHHHHHHHHHHHHHhCCceEEEEeccCceecchhhHHHHHHHHHhcCCCccHHHhhHHHhHHHhhcCchheeeEechH
Confidence 99999999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred cchhhHHHhhhhhcCCCCccceeeeCCCcceEeccccCCCCCcccccccccCChhHHHHHHHHHHhhcCCHHHHHHHHHH
Q 018224 247 LYGNLVSNTAAGIAGGTGVMPGGNVGADTAVFEQGASAGNVGNEKVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETA 326 (359)
Q Consensus 247 lfGDILSDlaa~l~GglGl~psanig~~~a~FEp~~~~~HGsApdiaGk~~ANP~a~Ils~ammL~~lg~~~~A~~i~~A 326 (359)
|||+|+|++|++|+||.|+.|++|+|+++++|||.++ |++ .+++||++|||+|+|+|++|||+|||++.+|++|++|
T Consensus 264 lYgniisNiaaGlvGG~Glv~G~n~G~~yAVFE~g~r--~~~-~~~~g~~~aNPtA~llss~~MLrHL~l~~~Ad~i~~A 340 (375)
T KOG0784|consen 264 LYGNIISNIAAGLVGGAGLVSGANYGDDYAVFEPGAR--HTG-TSIAGKNIANPTAMLLSSVDMLRHLGLPSHADRISTA 340 (375)
T ss_pred HHHHHHHHHHHHhcCCCCcccccccccceEEeccccc--ccc-hhhhcccccCcHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 9999999999999999999999999999999999988 887 5599999999999999999999999999999999999
Q ss_pred HHHHHHcCcccCCCCCCCCcHHHHHHHHHHhcC
Q 018224 327 VKRVISEEKYRTKDLGGGCTTQQIVDAVIANLD 359 (359)
Q Consensus 327 v~~~l~~g~~~T~Dlgg~~~T~e~~~av~~~l~ 359 (359)
|.+++.+|++||+||||+.||++|+++||++|+
T Consensus 341 v~~vi~egk~rT~DlGG~~Tt~dvi~avI~~l~ 373 (375)
T KOG0784|consen 341 VKRVIDEGKIRTKDLGGQSTTQDVIDAVIANLR 373 (375)
T ss_pred HHHHHhcCcccccccCCCcchHHHHHHHHHHhc
Confidence 999999999999999999999999999999874
No 22
>PF00180 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; InterPro: IPR024084 Isocitrate dehydrogenase (IDH) [, ] is an important enzyme of carbohydrate metabolism which catalyses the oxidative decarboxylation of isocitrate into alpha-ketoglutarate. IDH is either dependent on NAD+ (1.1.1.41 from EC) or on NADP+ (1.1.1.42 from EC). In eukaryotes there are at least three isozymes of IDH: two are located in the mitochondrial matrix (one NAD+-dependent, the other NADP+-dependent), while the third one (also NADP+-dependent) is cytoplasmic. In Escherichia coli the activity of a NADP+-dependent form of the enzyme is controlled by the phosphorylation of a serine residue; the phosphorylated form of IDH is completely inactivated. 3-isopropylmalate dehydrogenase (1.1.1.85 from EC) (IMDH) [, ] catalyses the third step in the biosynthesis of leucine in bacteria and fungi, the oxidative decarboxylation of 3-isopropylmalate into 2-oxo-4-methylvalerate. Tartrate dehydrogenase (1.1.1.93 from EC) [] catalyses the reduction of tartrate to oxaloglycolate. These enzymes are evolutionary related. To this family also belongs the enzyme tartrate dehydrogenase, which shows strong homology to prokaryotic isopropylmalate dehydrogenases and, to a lesser extent, isocitrate dehydrogenase []. This entry represents a structural domain found in all types of isocitrate dehydrogenase, and in isopropylmalate dehydrogenase and tartrate dehydrogenase. The crystal structure of Escherichia coli isopropylmalate dehydrogenase has been described []. ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1WAL_A 1CNZ_B 2D4V_C 1CM7_A 4AOY_D 3FMX_X 3FLK_C 1A05_A 1X0L_B 4F7I_D ....
Probab=100.00 E-value=1.4e-104 Score=784.25 Aligned_cols=318 Identities=47% Similarity=0.775 Sum_probs=299.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHHcC----CCeeEEEEEecCc-cc----CCcHHHHHHHHhcCceeeccccCCCCCCcc
Q 018224 31 AVTLIPGDGIGPLVTNAVEQVMEAMH----APIYFEKYEVHGD-MK----RVPQQVLDSIRKNKVCLKGGLKTPVGGGVS 101 (359)
Q Consensus 31 ~I~vi~GDGIGpEV~~~a~~vl~~~~----~~ie~~~~~~g~~-~~----~lp~et~~~~~~~da~l~G~~~~p~~~~~~ 101 (359)
+|++|||||||||||+++++||+++. ++++|+++++|.+ ++ ++|++++++|+++|++||||+++|..++.+
T Consensus 1 kI~vipGDGIGpEv~~~~~~Vl~a~~~~~~~~~e~~~~~~G~~~~~~~g~~lp~et~~~i~~~daiL~Gai~~p~~~~~~ 80 (348)
T PF00180_consen 1 KIAVIPGDGIGPEVMPAALRVLEAAAEKYGLDFEFEEFDIGGEAYDKTGEPLPDETLEAIKRADAILKGAIGTPKPPGIR 80 (348)
T ss_dssp EEEEEEESTTHHHHHHHHHHHHHHHHHHHTEEEEEEEEETSHHHHHHHSSSSHHHHHHHHHHCSEEEEEE--CGGSSSHS
T ss_pred CcceeccCcchHHHHHHHHHHHHHHHhhcccccccccccchhhhhhhccccccHHHHHHHhhcCcEEEcccccccccccc
Confidence 69999999999999999999999974 8999999999987 43 899999999999999999999999855555
Q ss_pred cc--hHHHHhhcCcEEEEEEeecC--CCCCCCcc-----cccEEEEecCCcceEeccceeeeCC-----EEEEEEeecHH
Q 018224 102 SL--NVQLRKELDLYAALVNCFNL--PGLPTRHQ-----NVDIVVIRENTEGEYSGLEHEVVPG-----VVESLKVITKF 167 (359)
Q Consensus 102 s~--~~~LR~~ldlyanvRP~~~~--pg~~~~~~-----~iDivivREnteG~Y~g~~~~~~~~-----va~~~~~~Tr~ 167 (359)
+. ++.||+.||||+|+||||++ ++.++|++ ++||+||||||||+|+|.+++..++ +++++++|||+
T Consensus 81 ~~~~l~~lR~~ldl~anvRp~~~~~~~~~~~~~~~~~~~~iDivivREnteG~Y~g~~~~~~~~~~~~~~a~~~~~~t~~ 160 (348)
T PF00180_consen 81 SENGLLKLRKELDLYANVRPVRSFPGPGVPSPLKDEIPEGIDIVIVRENTEGLYSGIEHEIGDGGTPDEVAIDTKVITRE 160 (348)
T ss_dssp HHHHHHHHHHHTTHHEEEEEEEEECETTGGSSBSHHHHTTSEEEEEEESSSGGGGEEEEEECSEEEGSSEEEEEEEEEHH
T ss_pred cHHHHHHHHHhcccceeeEEEEEeccccccccccccccCcceEEEecccccCcccCCCCceeeccCCCceEEEeeccccc
Confidence 44 48999999999999999999 56677776 5999999999999999999987655 89999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHh-hCCceeeceeeHhHHHHHHHhCCCCccEEEeCC
Q 018224 168 CSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVAT-KYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPN 246 (359)
Q Consensus 168 ~~eRiar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~-eypdI~~~~~~vD~~~~~Lv~~P~~fdViv~~N 246 (359)
++|||+|+||++|++|++++||++||+|+|+.++ +|+++|+||++ +||+|++++++||+++|+||++|++||||||+|
T Consensus 161 ~~eRi~r~AF~~A~~r~~k~Vt~v~KaNvl~~~~-lf~~~~~eva~~~yp~I~~~~~~vD~~~~~Lv~~P~~fdViv~~N 239 (348)
T PF00180_consen 161 GIERIARFAFEYARKRGRKKVTVVHKANVLKSTD-LFREVFQEVAKQEYPDIEVEHMLVDAAAMQLVKNPEQFDVIVTPN 239 (348)
T ss_dssp HHHHHHHHHHHHHHHTTTSEEEEEESTTTSTTHH-HHHHHHHHHHHHTHTTSEEEEEEHHHHHHHHHHSGGGESEEEEEH
T ss_pred hhhHHHHHHHHHHHHhCCceEEEEeccchhHHHH-HHHHHHHHHHHhhcceeEeeeeechhhhheeecCCcceeEEeecc
Confidence 9999999999999999999999999999999998 99999999999 999999999999999999999999999999999
Q ss_pred cchhhHHHhhhhhcCCCCccceeeeC-CCcceEeccccCCCCCcccccccccCChhHHHHHHHHHHhh-cCCHHHHHHHH
Q 018224 247 LYGNLVSNTAAGIAGGTGVMPGGNVG-ADTAVFEQGASAGNVGNEKVVEQKKANPVALLLSSAMMLRH-LQFPSFADRLE 324 (359)
Q Consensus 247 lfGDILSDlaa~l~GglGl~psanig-~~~a~FEp~~~~~HGsApdiaGk~~ANP~a~Ils~ammL~~-lg~~~~A~~i~ 324 (359)
||||||||++++++||+||+||+|+| +.+++|||+ |||||||+|||+|||+|+|||++|||+| ||++++|++|+
T Consensus 240 l~GDIlSDl~a~l~G~lGl~psanig~~~~a~fEp~----HGSApdiaGk~~aNP~a~Ils~a~mL~~~lg~~~~a~~i~ 315 (348)
T PF00180_consen 240 LFGDILSDLAAGLVGGLGLAPSANIGPDGHAMFEPV----HGSAPDIAGKGIANPIAMILSAAMMLEHSLGLPEAADAIE 315 (348)
T ss_dssp HHHHHHHHHHHHHHTSGGGEEEEEEETSSEEEEEES----STTTGGGTTSSHS-THHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred hhHHHHHHHhhhcCCChhhhhhhccCcccccccccc----ccccccccCCcccCcHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 99999999999999999999999999 789999999 9999999999999999999999999999 99999999999
Q ss_pred HHHHHHHHcCcccCCCCCCCC----cHHHHHHHH
Q 018224 325 TAVKRVISEEKYRTKDLGGGC----TTQQIVDAV 354 (359)
Q Consensus 325 ~Av~~~l~~g~~~T~Dlgg~~----~T~e~~~av 354 (359)
+||.+++++| ++|+||||++ +|+||+|+|
T Consensus 316 ~Av~~~l~~g-~~T~Dlgg~~~~~~~T~e~~daV 348 (348)
T PF00180_consen 316 KAVEKVLEEG-IRTPDLGGSATTAVSTEEFGDAV 348 (348)
T ss_dssp HHHHHHHHTT-EEBGGGHTTTCEEBHHHHHHHHH
T ss_pred HHHHHHHHcC-CCCccccCCCCCCCCHHHHHhhC
Confidence 9999999998 7999999999 999999997
No 23
>PRK08299 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=2.5e-97 Score=736.95 Aligned_cols=318 Identities=23% Similarity=0.250 Sum_probs=292.6
Q ss_pred cceEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEecCc-cc----CCcHHHHHHHHhcCceeeccccCCCC------
Q 018224 29 PRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGD-MK----RVPQQVLDSIRKNKVCLKGGLKTPVG------ 97 (359)
Q Consensus 29 ~~~I~vi~GDGIGpEV~~~a~~vl~~~~~~ie~~~~~~g~~-~~----~lp~et~~~~~~~da~l~G~~~~p~~------ 97 (359)
+.+|++||||||||||+++++.+|.+.+++++|+++++|.+ ++ .+|++++++||++|++||||+++|..
T Consensus 7 ~~~~~~~~gd~i~~~~~~~~~~~~~~~~~~i~~~~~d~G~~~~~~~G~~lp~~tl~~ik~~da~LkGav~tp~~~~~~~~ 86 (402)
T PRK08299 7 KNPVVELDGDEMTRIIWKFIKDKLILPYLDIDLEYYDLGIENRDATDDQVTIDAANAIKKYGVGVKCATITPDEARVKEF 86 (402)
T ss_pred CCceEEecCCCchHHHHHHHHHHHhccCCCeEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECCccCCCccccccc
Confidence 57899999999999999999999999999999999999987 43 89999999999999999999999942
Q ss_pred ---CCcccchHHHHhhcCcEEEEEEe--ec----CCCCCCCcccccEEEEecCCcceEeccceee------------eCC
Q 018224 98 ---GGVSSLNVQLRKELDLYAALVNC--FN----LPGLPTRHQNVDIVVIRENTEGEYSGLEHEV------------VPG 156 (359)
Q Consensus 98 ---~~~~s~~~~LR~~ldlyanvRP~--~~----~pg~~~~~~~iDivivREnteG~Y~g~~~~~------------~~~ 156 (359)
+.++|+|+.||+.||||+|+||+ ++ +||+++ +++||||||||+|+|.++.. .++
T Consensus 87 ~~~~~~~s~n~~LRk~ldLyaNiRPv~~k~i~~~~pg~~~-----~ivivREnTEg~Y~gi~~~~~r~~~~~~~~~~~~g 161 (402)
T PRK08299 87 NLKKMWKSPNGTIRNILGGTVFREPIICKNVPRLVPGWTK-----PIVIGRHAYGDQYRATDFKVPGKGKLTLVFTGEDG 161 (402)
T ss_pred CccccccCchHHHHHHcCCeEEEEeeecccccccCCCCCC-----CEEEEecccCCcccceeEEeccCccceeeeecCCC
Confidence 13679999999999999999998 66 788764 49999999999999998764 222
Q ss_pred ------------EEEEEEe-ecHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHh-hCC------
Q 018224 157 ------------VVESLKV-ITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVAT-KYP------ 216 (359)
Q Consensus 157 ------------va~~~~~-~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~-eyp------ 216 (359)
.++++++ +||++++||+|+||+||++|+ ++||+|||+|||+.+||||+++|+||++ +||
T Consensus 162 ~~~e~~~~~~~~~~~~~~~~~Tr~~~eRIa~~AF~~A~~r~-~kVt~v~KaNVlk~t~glf~~~~~evA~~~yp~~~~~~ 240 (402)
T PRK08299 162 EPIEHEVHDFPGAGVAMGMYNLDESIRDFARASFNYGLDRK-YPVYLSTKNTILKAYDGRFKDIFQEVYEAEFKEKFEAA 240 (402)
T ss_pred ccccceecccccCceeEEEeecHHHHHHHHHHHHHHHHHcC-CCEEEECCCCcchhhhHHHHHHHHHHHHHhCccccccC
Confidence 1234555 999999999999999999985 5799999999999999999999999985 899
Q ss_pred ceeeceeeHhHHHHHHHhCCCCccEEEeCCcchhhHHHhhhhhcCCCCccceeeeCCCc--ceEeccccCCCCCccc---
Q 018224 217 SIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGGNVGADT--AVFEQGASAGNVGNEK--- 291 (359)
Q Consensus 217 dI~~~~~~vD~~~~~Lv~~P~~fdViv~~NlfGDILSDlaa~l~GglGl~psanig~~~--a~FEp~~~~~HGsApd--- 291 (359)
+|++++++||++|||||++|++| ||||+|||||||||++|+++||+|++||+|+|++. +||||+ ||||||
T Consensus 241 ~i~~~~~~vDa~~~~lv~~P~~f-Vivt~NlfGDIlSDlaa~l~GglG~apSanig~~~~~a~FEp~----HGSAPD~~~ 315 (402)
T PRK08299 241 GITYEHRLIDDMVASALKWEGGY-VWACKNYDGDVQSDTVAQGFGSLGLMTSVLMTPDGKTVEAEAA----HGTVTRHYR 315 (402)
T ss_pred cEEEEEeeHHHHHHHHHhCcCCc-EEEEeccccchhhhHHHhhcCCcccccceeeCCCCCcEEEecC----CCCCccccc
Confidence 59999999999999999999999 99999999999999999999999999999999874 899999 999999
Q ss_pred --cccccc-CChhHHHHHHHHHHhhcCC-------HHHHHHHHHHHHHHHHcCcccCCCCC-------CCCcHHHHHHHH
Q 018224 292 --VVEQKK-ANPVALLLSSAMMLRHLQF-------PSFADRLETAVKRVISEEKYRTKDLG-------GGCTTQQIVDAV 354 (359)
Q Consensus 292 --iaGk~~-ANP~a~Ils~ammL~~lg~-------~~~A~~i~~Av~~~l~~g~~~T~Dlg-------g~~~T~e~~~av 354 (359)
|+|||+ |||+|+|||++|||+|||+ .++|++|++||.+++++| ++|+||| |.+||+||+|+|
T Consensus 316 ~~IaGk~~~ANP~A~IlS~amML~~LG~~~~~~~l~~~a~~I~~Av~~~l~~g-~~T~Dlg~~~g~~~g~~tT~e~~daI 394 (402)
T PRK08299 316 QHQKGEETSTNPIASIFAWTRGLAHRGKLDGNPELVKFADTLEKVCIETVESG-FMTKDLALLVGPDQKWLTTEEFLDAI 394 (402)
T ss_pred ccccCCCCccCHHHHHHHHHHHHHHhCCccccchHHHHHHHHHHHHHHHHHcC-CcCccchhccCCCCCCcCHHHHHHHH
Confidence 999997 9999999999999999999 889999999999999999 6899995 459999999999
Q ss_pred HHhc
Q 018224 355 IANL 358 (359)
Q Consensus 355 ~~~l 358 (359)
+++|
T Consensus 395 i~~l 398 (402)
T PRK08299 395 DENL 398 (402)
T ss_pred HHHH
Confidence 9987
No 24
>PLN00103 isocitrate dehydrogenase (NADP+); Provisional
Probab=100.00 E-value=1.1e-94 Score=719.63 Aligned_cols=320 Identities=21% Similarity=0.250 Sum_probs=294.3
Q ss_pred cceEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEecCc-cc----CCcHHHHHHHHhcCceeeccccCCCCC-----
Q 018224 29 PRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGD-MK----RVPQQVLDSIRKNKVCLKGGLKTPVGG----- 98 (359)
Q Consensus 29 ~~~I~vi~GDGIGpEV~~~a~~vl~~~~~~ie~~~~~~g~~-~~----~lp~et~~~~~~~da~l~G~~~~p~~~----- 98 (359)
...+++|+|||||+|++++++++|.+..++++|+++++|.+ ++ .+|++++++|+++|++||||+++|.++
T Consensus 9 ~~p~~~~~Gd~~~~~~~~~~~~~~~~~~~~i~~~~~d~G~~~~~~tg~~lp~e~le~~k~~da~lkGav~tp~~~~~~~~ 88 (410)
T PLN00103 9 ANPIVEMDGDEMTRVIWKSIKDKLIFPFLDLDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEF 88 (410)
T ss_pred cCCeEEecCCcchHHHHHHHHHHHhcCCCCeEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECCccCccccccccc
Confidence 46799999999999999999999999999999999999987 43 899999999999999999999999532
Q ss_pred C----cccchHHHHhhcCcEEEEEE--eecCC----CCCCCc---------------------ccccEEEEecCCcceEe
Q 018224 99 G----VSSLNVQLRKELDLYAALVN--CFNLP----GLPTRH---------------------QNVDIVVIRENTEGEYS 147 (359)
Q Consensus 99 ~----~~s~~~~LR~~ldlyanvRP--~~~~p----g~~~~~---------------------~~iDivivREnteG~Y~ 147 (359)
+ ++|+|++||+.||||+|+|| ||++| |+++|+ +++|+|||||||||+|
T Consensus 89 ~~~~~~~s~n~~lRk~ldlyanvRP~~vk~~~~~~~g~~~~i~~~~~~~~~~~~~~d~v~~~~~~id~vivRENTEg~y- 167 (410)
T PLN00103 89 GLKQMWKSPNGTIRNILNGTVFREPIICKNIPRLVPGWTKPICIGRHAFGDQYRATDAVIKGPGKLKLVFVPEGKDEKT- 167 (410)
T ss_pred CccccccCchHHHHHHcCCeEEecchhccccCccCCCCCCceeecccccccccccceeccCCCCceEEEEEecCCCcee-
Confidence 3 67999999999999999999 99988 888875 6789999999999999
Q ss_pred ccceeee---CCEEEEEEee-cHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHh-----hCC--
Q 018224 148 GLEHEVV---PGVVESLKVI-TKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVAT-----KYP-- 216 (359)
Q Consensus 148 g~~~~~~---~~va~~~~~~-Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~-----eyp-- 216 (359)
+++.. +..+++++++ |+++++||+|+||+||++|+ ++||++||+|||+.+||+|+++|+||++ +||
T Consensus 168 --e~~~~~~~g~~~v~~~~~~T~~~~~Riar~AFe~A~~r~-~~vt~v~KaNVlk~~dglf~~~~~eva~~~~~~eyp~~ 244 (410)
T PLN00103 168 --ELEVYNFTGAGGVALSMYNTDESIRAFAEASMNTAYQKK-WPLYLSTKNTILKKYDGRFKDIFQEVYEAQWKSKFEAA 244 (410)
T ss_pred --EEEeeccCCCcceEEEEEcCHHHHHHHHHHHHHHHHhcC-CcEEEECCCCCchhhHHHHHHHHHHHHHhhhhhhCCCC
Confidence 23321 2235567886 99999999999999999985 5699999999999999999999999986 799
Q ss_pred ceeeceeeHhHHHHHHHhCCCCccEEEeCCcchhhHHHhhhhhcCCCCccceeeeCCCc--ceEeccccCCCCCccc---
Q 018224 217 SIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGGNVGADT--AVFEQGASAGNVGNEK--- 291 (359)
Q Consensus 217 dI~~~~~~vD~~~~~Lv~~P~~fdViv~~NlfGDILSDlaa~l~GglGl~psanig~~~--a~FEp~~~~~HGsApd--- 291 (359)
+|++++++||++||+||++|++| ||||+|||||||||++|+++||+||+||+|+|++. +||||+ ||||||
T Consensus 245 ~I~~~~~lVDa~a~~lv~~P~~f-Viv~~NLfGDIlSDlaA~l~GslGlapSanig~~~~~~~FEp~----HGSApd~~~ 319 (410)
T PLN00103 245 GIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAA----HGTVTRHYR 319 (410)
T ss_pred ceEEEEeEHHHHHHHHhcCCCCC-EEEEcccchHHHHHHHHHhcCchhhhhccccCCCCCcEEEeCC----CCcCcccch
Confidence 89999999999999999999999 99999999999999999999999999999999873 699999 999998
Q ss_pred ---ccccccCChhHHHHHHHHHHhhc-------CCHHHHHHHHHHHHHHHHcCcccCCCC-----CCC------CcHHHH
Q 018224 292 ---VVEQKKANPVALLLSSAMMLRHL-------QFPSFADRLETAVKRVISEEKYRTKDL-----GGG------CTTQQI 350 (359)
Q Consensus 292 ---iaGk~~ANP~a~Ils~ammL~~l-------g~~~~A~~i~~Av~~~l~~g~~~T~Dl-----gg~------~~T~e~ 350 (359)
|+|||+|||+|+|||++|||+|| |+.++|++|++||.+++++| .+|+|| ||+ ++|+||
T Consensus 320 ~~diaGk~iANP~A~IlS~ammL~~l~~~~~~~g~~~~a~~i~~Av~~~l~~G-~~T~Dl~~~~~gg~~~~~~~~~T~e~ 398 (410)
T PLN00103 320 VHQKGGETSTNSIASIFAWSRGLAHRAKLDGNARLLDFTEKLEAACVGTVESG-KMTKDLALLIHGPKVSRDQYLNTEEF 398 (410)
T ss_pred hhhhcCCCccChHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHcC-CCCcccccccCCCcccCCCCcCHHHH
Confidence 89999999999999999999998 89999999999999999999 689999 454 899999
Q ss_pred HHHHHHhc
Q 018224 351 VDAVIANL 358 (359)
Q Consensus 351 ~~av~~~l 358 (359)
+|+|+++|
T Consensus 399 ~daV~~~l 406 (410)
T PLN00103 399 IDAVAEEL 406 (410)
T ss_pred HHHHHHHH
Confidence 99999987
No 25
>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent, eukaryotic type. This model does not discriminate cytosolic, mitochondrial, and chloroplast proteins. However, the model starts very near the amino end of the cytosolic form; the finding of additional amino-terminal sequence may indicate a transit peptide.
Probab=100.00 E-value=6.4e-90 Score=684.53 Aligned_cols=322 Identities=23% Similarity=0.242 Sum_probs=293.4
Q ss_pred cceEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEecCc-cc----CCcHHHHHHHHhcCceeeccccCCCCC-----
Q 018224 29 PRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGD-MK----RVPQQVLDSIRKNKVCLKGGLKTPVGG----- 98 (359)
Q Consensus 29 ~~~I~vi~GDGIGpEV~~~a~~vl~~~~~~ie~~~~~~g~~-~~----~lp~et~~~~~~~da~l~G~~~~p~~~----- 98 (359)
...+.++.||.+-.-+++..++-|-...++++|+++++|.+ ++ ++|++++++|+++|++||||++||...
T Consensus 6 ~~p~v~~~g~em~~~~~~~~~~~~~~~~~~i~~~~~d~g~~~~~~tg~~lp~ea~eaik~~dv~LkGa~~TP~~~~~~~~ 85 (409)
T TIGR00127 6 ANPVVEMDGDEMTRIIWELIKDKLILPYVELDLKYYDLGVEYRDATNDQVTVDAAEAIKKYNVGVKCATITPDEARVEEF 85 (409)
T ss_pred cCCeEEecCcHHHHHHHHHHHHhhccCCcCceEEEEeCcHHHHHhhCCcCCHHHHHHHHHcCEEEECcccCCcccccccc
Confidence 46799999997777777655555555589999999999987 42 899999999999999999999998642
Q ss_pred ----CcccchHHHHhhcCcEEEEEE------eecCCCCCCC-----------cccccEEEEecCC-cceEeccceee---
Q 018224 99 ----GVSSLNVQLRKELDLYAALVN------CFNLPGLPTR-----------HQNVDIVVIRENT-EGEYSGLEHEV--- 153 (359)
Q Consensus 99 ----~~~s~~~~LR~~ldlyanvRP------~~~~pg~~~~-----------~~~iDivivREnt-eG~Y~g~~~~~--- 153 (359)
+++|+|++||+.||||+|+|| ++++||+++| ++++|++|+|||| ||+|+|.++..
T Consensus 86 ~l~k~~~S~n~~lR~~ldlyanvRPi~~~~~~~~~pg~~~~i~i~R~~~~~~y~~iD~vivREnt~Eg~Y~g~e~~~~~~ 165 (409)
T TIGR00127 86 KLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWEKPIIIGRHAFGDQYRATDFVVPGPGKLELVYKPKDGTQKVT 165 (409)
T ss_pred ccccccCCccHHHHHHcCCeEEeeeccccccCccCCCCCCCeeeeccccCCCcCceEEEEecCCeeeEEEECCCCCcccc
Confidence 358999999999999999999 8899999876 6789999999999 99999998732
Q ss_pred --------eCCEEEEEEeecHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHH-hhCC------ce
Q 018224 154 --------VPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVA-TKYP------SI 218 (359)
Q Consensus 154 --------~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva-~eyp------dI 218 (359)
.++++.+. ++||+++|||+|+||+||++|+ ++||++||+||||.+||+|+++|+||+ ++|| +|
T Consensus 166 ~~~~~~~~~~~v~~~~-~~T~~~~eRIar~AF~~A~~~~-~~Vt~v~KaNVlk~~dglf~~~~~eva~~eYp~~~~~~~I 243 (409)
T TIGR00127 166 LKVYDFEEGGGVAMAM-YNTDESIEGFAHSSFQLALEKK-WPLYLSTKNTILKKYDGRFKDIFQEVYEAQYKSKFEALGI 243 (409)
T ss_pred eeeeeccCCCCeEEEE-EECHHHHHHHHHHHHHHHHHcC-CCEEEEcCcchhhhhhHHHHHHHHHHHHHhCcccccCCCE
Confidence 14677766 8999999999999999999984 679999999999999999999999996 7999 89
Q ss_pred eeceeeHhHHHHHHHhCCCCccEEEeCCcchhhHHHhhhhhcCCCCccceeeeCCCcc--eEeccccCCCCCcccc----
Q 018224 219 KYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGGNVGADTA--VFEQGASAGNVGNEKV---- 292 (359)
Q Consensus 219 ~~~~~~vD~~~~~Lv~~P~~fdViv~~NlfGDILSDlaa~l~GglGl~psanig~~~a--~FEp~~~~~HGsApdi---- 292 (359)
++++++||++|||||++|++| ||||+|||||||||++|+++||+||+||+|+|++.+ +|||+ |||||||
T Consensus 244 ~~~~~lVDa~~m~lv~~P~~f-Viv~~NlfGDIlSDlaA~l~GslGl~pSanig~~~~~~~fEp~----HGSApdi~~~~ 318 (409)
T TIGR00127 244 WYEHRLIDDMVAQALKSEGGF-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLICPDGKTFEAEAA----HGTVTRHYRMY 318 (409)
T ss_pred EEEEeeHHHHHHHHhhCCCCc-EEEecccchHHHHHHHHHhcCchhhhheeeeCCCCceEEeccc----cCCCcccchhh
Confidence 999999999999999999999 999999999999999999999999999999998865 66999 9999998
Q ss_pred -ccc-ccCChhHHHHHHHHHHhhcC-------CHHHHHHHHHHHHHHHHcCcccCCCC----CCC-------CcHHHHHH
Q 018224 293 -VEQ-KKANPVALLLSSAMMLRHLQ-------FPSFADRLETAVKRVISEEKYRTKDL----GGG-------CTTQQIVD 352 (359)
Q Consensus 293 -aGk-~~ANP~a~Ils~ammL~~lg-------~~~~A~~i~~Av~~~l~~g~~~T~Dl----gg~-------~~T~e~~~ 352 (359)
||| ++|||+|+|||++|||+|+| ++++|++|++||.+++++| ++|+|| ||+ ++|+||+|
T Consensus 319 iaGk~~~ANP~A~IlS~ammL~~lg~~~~~~g~~~~A~~Ie~Av~~~i~~g-~~T~Dl~~~~GG~~~~~~~~~~T~e~~d 397 (409)
T TIGR00127 319 QKGQETSTNSIASIFAWSRGLAHRAKLDNNPELSKFANILESACINTVEAG-IMTKDLALILGGSPVERSAYLNTEEFID 397 (409)
T ss_pred hCCCCCccChHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHHHHhcC-CcccccccccCCCcccCCCCcCHHHHHH
Confidence 896 89999999999999999986 6899999999999999999 799999 888 99999999
Q ss_pred HHHHhc
Q 018224 353 AVIANL 358 (359)
Q Consensus 353 av~~~l 358 (359)
+|+++|
T Consensus 398 aV~~~L 403 (409)
T TIGR00127 398 AVEERL 403 (409)
T ss_pred HHHHHH
Confidence 999987
No 26
>PTZ00435 isocitrate dehydrogenase; Provisional
Probab=100.00 E-value=1.8e-89 Score=681.94 Aligned_cols=323 Identities=22% Similarity=0.251 Sum_probs=292.5
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEecCc-cc----CCcHHHHHHHHhcCceeeccccCCCCC---C
Q 018224 28 SPRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGD-MK----RVPQQVLDSIRKNKVCLKGGLKTPVGG---G 99 (359)
Q Consensus 28 ~~~~I~vi~GDGIGpEV~~~a~~vl~~~~~~ie~~~~~~g~~-~~----~lp~et~~~~~~~da~l~G~~~~p~~~---~ 99 (359)
-+.++..+.||.+-.-+++-.++-|-...++++|+++++|.+ ++ .+|++++++||++|++||||++||.++ +
T Consensus 8 ~~~~~v~~~~~em~~~~~~~~~~~~~~~~~~i~~~~~d~g~~~~~~tg~~lp~ea~eaik~~~v~LkGa~~TP~~~~~~~ 87 (413)
T PTZ00435 8 VKNPVVELDGDEMTRIIWKMIKEKLILPYLDVPIKYYDLSIENRDKTDDKVTVDAAEAIKKHKVGIKCATITPDEARVKE 87 (413)
T ss_pred ccCCeEEecccHHHHHHHHHHHHhhccCCCCceEEEEeCcHHHHHhcCCcCCHHHHHHHHHcCEEEECcccCCccccccc
Confidence 357899999997777777666555555689999999999987 42 899999999999999999999999652 2
Q ss_pred ------cccchHHHHhhcCcEEEEEEe------ecCCCCCCC-----------cccccEEEEecCC-cceEecc-cee--
Q 018224 100 ------VSSLNVQLRKELDLYAALVNC------FNLPGLPTR-----------HQNVDIVVIRENT-EGEYSGL-EHE-- 152 (359)
Q Consensus 100 ------~~s~~~~LR~~ldlyanvRP~------~~~pg~~~~-----------~~~iDivivREnt-eG~Y~g~-~~~-- 152 (359)
++|+|++||+.||||+|+||| +++||+++| ++++|++|+|||| ||+|++. +++
T Consensus 88 ~~l~~~~~S~n~~LR~~ldlyanvRPi~~k~i~~~~pg~~~~i~i~Ren~e~~y~~id~vi~rent~e~~y~~~~g~~~~ 167 (413)
T PTZ00435 88 FNLKKMWKSPNGTIRNILDGTVFREPIIIKNIPRLVPGWKKPIVIGRHAFGDQYKATDFVVDGPGKLELVFTPADGSEPQ 167 (413)
T ss_pred cccccccCCchHHHHHHcCCeEEEeeeeccccCccCCCCCCCeeeeccccCCCcCceEEEEecCCEEEEEEecCCCCcce
Confidence 689999999999999999998 668888776 6789999999999 9999998 443
Q ss_pred -------eeCCEEEEEEeecHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHh-hCC------ce
Q 018224 153 -------VVPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVAT-KYP------SI 218 (359)
Q Consensus 153 -------~~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~-eyp------dI 218 (359)
..++++.+. ++||++++||+|+||+||++|+ ++||++||+||||.+||+|+++|+||++ +|| +|
T Consensus 168 ~~~~~~~~~~~v~~~~-~~Tr~~~eRIar~AF~~A~~r~-~~Vt~v~KaNVlk~~dglf~~~~~eva~~eYpe~~~~~~I 245 (413)
T PTZ00435 168 RVDVFDFKGGGVAMGM-YNTDESIEGFARSCFQYALDRK-MPLYLSTKNTILKKYDGRFKDIFQEIYDEEYKAKFEKAGL 245 (413)
T ss_pred eeeeeccCCCCeeEEE-EeCHHHHHHHHHHHHHHHHHcC-CCEEEECCCCcchhhHHHHHHHHHHHHHHhCccccccCCE
Confidence 236777655 9999999999999999999985 4799999999999999999999999985 699 99
Q ss_pred eeceeeHhHHHHHHHhCCCCccEEEeCCcchhhHHHhhhhhcCCCCccceeeeCCCc--ceEeccccCCCCCcccc----
Q 018224 219 KYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGGNVGADT--AVFEQGASAGNVGNEKV---- 292 (359)
Q Consensus 219 ~~~~~~vD~~~~~Lv~~P~~fdViv~~NlfGDILSDlaa~l~GglGl~psanig~~~--a~FEp~~~~~HGsApdi---- 292 (359)
++++++||++|||||++|++| ||||+|||||||||++|+++||+||+||+|+|++. ++|||+ |||||||
T Consensus 246 ~~~~~lVDa~~m~lv~~P~~f-ViV~~NlfGDIlSDlaA~l~GglGlapSanig~d~~~a~FEp~----HGSApdi~~~~ 320 (413)
T PTZ00435 246 WYEHRLIDDMVAQAIKSEGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTSVLVCPDGKTVEAEAA----HGTVTRHYRQH 320 (413)
T ss_pred EEEEeeHHHHHHHHhhCCCCe-EEEeecccchhhhHHHHHhcCcccccccceeCCCCCeEEEEcC----cCCccccchhh
Confidence 999999999999999999999 99999999999999999999999999999999874 999999 9999998
Q ss_pred -ccc-ccCChhHHHHHHHHHHhhcCC-------HHHHHHHHHHHHHHHHcCcccCCCCC----CC--------CcHHHHH
Q 018224 293 -VEQ-KKANPVALLLSSAMMLRHLQF-------PSFADRLETAVKRVISEEKYRTKDLG----GG--------CTTQQIV 351 (359)
Q Consensus 293 -aGk-~~ANP~a~Ils~ammL~~lg~-------~~~A~~i~~Av~~~l~~g~~~T~Dlg----g~--------~~T~e~~ 351 (359)
+|| ++|||+|+|||++|||+|||+ .++|++|++||.+++++| ++|+||| |+ ++|+||+
T Consensus 321 iaGk~~~ANP~A~Ils~ammL~~lg~~~~~~~~~~~A~~ie~Av~~~i~~g-~~T~Dlg~~~~G~~~~~~~~~~~T~e~~ 399 (413)
T PTZ00435 321 QKGKETSTNSIASIFAWTRGLAHRAKLDNNQELVKFCQALERSCIETIEAG-FMTKDLAICVHGSSKVTRSDYLNTEEFI 399 (413)
T ss_pred hcCCCCccChHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHHcC-CCccccccccCCCccccCCCCcCHHHHH
Confidence 886 789999999999999999995 688999999999999999 6899997 74 8999999
Q ss_pred HHHHHhc
Q 018224 352 DAVIANL 358 (359)
Q Consensus 352 ~av~~~l 358 (359)
++|+++|
T Consensus 400 daV~~~L 406 (413)
T PTZ00435 400 DKVAEKL 406 (413)
T ss_pred HHHHHHH
Confidence 9999987
No 27
>PLN03065 isocitrate dehydrogenase (NADP+); Provisional
Probab=100.00 E-value=1.5e-87 Score=675.76 Aligned_cols=320 Identities=21% Similarity=0.217 Sum_probs=292.5
Q ss_pred cceEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEecCc-cc----CCcHHHHHHHHhcCceeeccccCCCC------
Q 018224 29 PRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGD-MK----RVPQQVLDSIRKNKVCLKGGLKTPVG------ 97 (359)
Q Consensus 29 ~~~I~vi~GDGIGpEV~~~a~~vl~~~~~~ie~~~~~~g~~-~~----~lp~et~~~~~~~da~l~G~~~~p~~------ 97 (359)
+.+|++|+|||||+|||+.++++|...+++++|+++++|.+ ++ .+|+|++++++++|++||||++||..
T Consensus 77 ~~piv~~~GDem~r~i~~~i~~~li~p~~di~~~~~dlG~e~rd~Tgd~v~~da~~aikk~~v~lKgAt~TP~~~rv~e~ 156 (483)
T PLN03065 77 QNPIVEMDGDEMTRVIWQMIKDKLIFPYLDLDIKYFDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEF 156 (483)
T ss_pred cCCeEEecCCcchHHHHHHHHHHHhcCCCCceEEEEeCcHHHHHhhCCcCCHHHHHHHHHcCEEEECcccCCcccccccc
Confidence 46799999999999999999999999999999999999987 42 89999999999999999999999964
Q ss_pred ---CCcccchHHHHhhcCcEEEEEEe------ecCCCCCCC-----------cccccEEEE----------ecCCcceEe
Q 018224 98 ---GGVSSLNVQLRKELDLYAALVNC------FNLPGLPTR-----------HQNVDIVVI----------RENTEGEYS 147 (359)
Q Consensus 98 ---~~~~s~~~~LR~~ldlyanvRP~------~~~pg~~~~-----------~~~iDiviv----------REnteG~Y~ 147 (359)
+.|+|+|++||+.||||+|+||| +++||++.| ++++|++|+ |||||+
T Consensus 157 ~lk~~w~SpN~tiR~~Ldl~v~rrPi~~~ni~r~vpg~~~pI~i~Rha~gd~Y~~iD~vi~~~g~~~~~~~rEnte~--- 233 (483)
T PLN03065 157 GLKSMWRSPNGTIRNILNGTVFREPILCKNIPRLVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFVPEDGNA--- 233 (483)
T ss_pred ccccccCCccHHHHHHcCCeEEeeeeeccccCccCCCCCCCeEEeecccCCCcCceEEEEecCCeeEEEeecCCCCC---
Confidence 24689999999999999999999 888998765 467888887 888876
Q ss_pred cccee----eeCCEEEEEEeecHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHH-----hhCC--
Q 018224 148 GLEHE----VVPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVA-----TKYP-- 216 (359)
Q Consensus 148 g~~~~----~~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva-----~eyp-- 216 (359)
+.++. ..++++.+. ++|+++++||+|+||+||++| +++||++||+||||.+||+|+++|+||+ ++||
T Consensus 234 ~~e~~v~~f~~~gva~~~-~nT~~sieriAr~AF~yA~~r-k~~Vt~v~KaNILK~~DGlF~dif~eVa~~eyk~~yp~~ 311 (483)
T PLN03065 234 PVELDVYDFKGPGVALAM-YNVDESIRAFAESSMAMALQK-KWPLYLSTKNTILKKYDGRFKDIFQEVYEEQWKQKFEEH 311 (483)
T ss_pred cceeEeeccCCCCeEEEE-EECHHHHHHHHHHHHHHHHHc-CCCEEEEeCCCcccchHHHHHHHHHHHHHHhhhhcCCCC
Confidence 44443 246788875 899999999999999999998 4579999999999999999999999998 4599
Q ss_pred ceeeceeeHhHHHHHHHhCCCCccEEEeCCcchhhHHHhhhhhcCCCCccceeeeCCCc--ceEeccccCCCCCccc---
Q 018224 217 SIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGGNVGADT--AVFEQGASAGNVGNEK--- 291 (359)
Q Consensus 217 dI~~~~~~vD~~~~~Lv~~P~~fdViv~~NlfGDILSDlaa~l~GglGl~psanig~~~--a~FEp~~~~~HGsApd--- 291 (359)
+|+++|++||+|+||||++|++| ||||+|||||||||++|+++|||||+||+|+|++. ++|||+ ||||||
T Consensus 312 ~I~~e~~lIDa~~~~lvk~P~~F-Viv~~NlfGDIlSDl~A~l~GsLGl~pSanig~dg~~~~fEa~----HGSapd~~~ 386 (483)
T PLN03065 312 SIWYEHRLIDDMVAYAVKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAA----HGTVTRHFR 386 (483)
T ss_pred CceEEeeeHHHHHHHHHhCCCCc-EEEeeccchhhhhHHHHHhcCchhhcccceeCCCCceEEEecC----cCcCccccc
Confidence 69999999999999999999999 99999999999999999999999999999999875 599999 999999
Q ss_pred --ccccc-cCChhHHHHHHHHHHhhcCC-------HHHHHHHHHHHHHHHHcCcccCCCCC----CC-------CcHHHH
Q 018224 292 --VVEQK-KANPVALLLSSAMMLRHLQF-------PSFADRLETAVKRVISEEKYRTKDLG----GG-------CTTQQI 350 (359)
Q Consensus 292 --iaGk~-~ANP~a~Ils~ammL~~lg~-------~~~A~~i~~Av~~~l~~g~~~T~Dlg----g~-------~~T~e~ 350 (359)
|+||+ +|||+|+|+|++|||+|+|. .++|++|++||.+++++| ++|+||| |. ++|+||
T Consensus 387 ~~iaGk~t~ANPiA~IlA~ammL~hlg~ld~~~~l~~~A~~Le~Av~~tie~G-~~T~DLg~~~~G~~~~~~~~~~T~ef 465 (483)
T PLN03065 387 LHQKGQETSTNSIASIFAWTRGLEHRAKLDKNEELLDFVHKLESACIETVESG-KMTKDLAILIHGPKVSREFYLNTEEF 465 (483)
T ss_pred hhccCCCCCcChHHHHHHHHHHHHHhCCCCccchHHHHHHHHHHHHHHHHHcC-CcccccccccCCCcccCCCCcCHHHH
Confidence 89999 59999999999999999997 679999999999999999 6899996 63 899999
Q ss_pred HHHHHHhcC
Q 018224 351 VDAVIANLD 359 (359)
Q Consensus 351 ~~av~~~l~ 359 (359)
+|+|+++|+
T Consensus 466 ~daV~~~L~ 474 (483)
T PLN03065 466 IDAVAQTLA 474 (483)
T ss_pred HHHHHHHHH
Confidence 999999873
No 28
>COG0538 Icd Isocitrate dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=4.6e-84 Score=627.50 Aligned_cols=327 Identities=39% Similarity=0.572 Sum_probs=307.3
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHHHHHc----C---CCeeEEEEEecCc-cc----CCcHHHHHHHHhcCceeeccccCC
Q 018224 28 SPRAVTLIPGDGIGPLVTNAVEQVMEAM----H---APIYFEKYEVHGD-MK----RVPQQVLDSIRKNKVCLKGGLKTP 95 (359)
Q Consensus 28 ~~~~I~vi~GDGIGpEV~~~a~~vl~~~----~---~~ie~~~~~~g~~-~~----~lp~et~~~~~~~da~l~G~~~~p 95 (359)
.+..|.+|.|||||+||++++.+|++++ . .+|+|.++++|.+ ++ .+|+||+++++++.+.+|||+.||
T Consensus 17 ~~piiP~IegDgiG~eit~~~~kvi~aav~k~Y~g~~~I~w~e~~aG~ka~d~tg~~lp~etl~aikky~VaIKgpl~TP 96 (407)
T COG0538 17 DKPIIPFIEGDGIGDEITRAIWKVIDAAVEKAYGGERKIEWKEVDAGEKARDKTGDQLPIETLEAIKKYGVAIKGPLTTP 96 (407)
T ss_pred CCcccceEecCCCcHHHHHHHHHHHHHHHHhhcCCcceeEEEEEecchHHHHhhcCcCCHHHHHHHHHhCEEeeccccCc
Confidence 4678999999999999999999999986 3 8999999999976 43 899999999999999999999999
Q ss_pred CCCCcccchHHHHhhcCcEEEEEEeecCCCCCCCcc---cccEEEEecCCcceEeccceee-------------------
Q 018224 96 VGGGVSSLNVQLRKELDLYAALVNCFNLPGLPTRHQ---NVDIVVIRENTEGEYSGLEHEV------------------- 153 (359)
Q Consensus 96 ~~~~~~s~~~~LR~~ldlyanvRP~~~~pg~~~~~~---~iDivivREnteG~Y~g~~~~~------------------- 153 (359)
.+++++|+|.+||+.||||+|+|||+.+||+|+|++ .+||||+|||||+.|.|.|+..
T Consensus 97 vg~g~rSlNvtlRq~Ldly~~~rPv~y~~gvPspvk~pe~~dmVIfRenteDiYagiE~~~~s~~a~kl~~fl~~e~~~~ 176 (407)
T COG0538 97 VGKGWRSLNVTLRQILDLYVFRRPVRYFPGVPSPVKRPEKVDMVIFRENTEDIYAGIEWKAGSPEALKLIFFLEDEMGVK 176 (407)
T ss_pred ccccccCchHHHHHHcCceEeeeeEEecCCCCCCCCCcccCCeEEEeccccchhheeeeccCCcchhhhhhhhhcccccc
Confidence 999999999999999999999999999999999985 4999999999999999999653
Q ss_pred ----eCCEEEEEEeecHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHhh--C------------
Q 018224 154 ----VPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATK--Y------------ 215 (359)
Q Consensus 154 ----~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~e--y------------ 215 (359)
+++..+.++.+++++++|++|.||+||.+++|+.||++||.|+||.|+|-|++|+.||+++ |
T Consensus 177 ~i~~pe~~GIgikp~s~~~s~Rlvr~ai~yAi~~~r~~VtlvhKgnImK~teGaFkdw~yeva~~~ef~~~~~~~~~~~~ 256 (407)
T COG0538 177 KIRFPEDSGIGIKPISKEGSIRLVRAAIEYAIENKRKSVTLVHKGNIMKFTEGAFKDWGYEVAEEEEFGDEVVTGKEKFE 256 (407)
T ss_pred eEecCCCCceEEEecCchhhHHHHHHHHHHHHHcCCceEEEEecCeeeecccchHHHHHHHHHhhhcccccccccchhhh
Confidence 1245678999999999999999999999998899999999999999999999999999875 2
Q ss_pred -Cc----eeeceeeHhHHHHHHHhCCCCccEEEeCCcchhhHHHhhhhhcCCCCccceeeeCCCcceEeccccCCCCCcc
Q 018224 216 -PS----IKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGGNVGADTAVFEQGASAGNVGNE 290 (359)
Q Consensus 216 -pd----I~~~~~~vD~~~~~Lv~~P~~fdViv~~NlfGDILSDlaa~l~GglGl~psanig~~~a~FEp~~~~~HGsAp 290 (359)
.+ |.++|+++|+|.+|++++|+.||||.|.||.||++||.+|+++||+||+||+|+|+.+++||++ |||||
T Consensus 257 ~~~~~gkI~~~driaD~mlqQil~r~~eydViA~~NlnGDy~SDa~Aa~vGglGi~pgani~~~~~~fEA~----HGTap 332 (407)
T COG0538 257 LKGPKGKIVYKDRIADDMLQQILLRPGEYDVIATKNLNGDYISDALAAQVGGLGLAPGANIGDGTAEFEAT----HGTAP 332 (407)
T ss_pred ccCcCceEEEehhhHHHHHHHHhcCCCCceEEEeccCCccHHHHHHHHhcCCccccccceecCceEEEEec----cCccc
Confidence 24 9999999999999999999999999999999999999999999999999999999989999999 99999
Q ss_pred cccccccCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHcCcccCCCCC----C---CCcHHHHHHHHHHhcC
Q 018224 291 KVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEEKYRTKDLG----G---GCTTQQIVDAVIANLD 359 (359)
Q Consensus 291 diaGk~~ANP~a~Ils~ammL~~lg~~~~A~~i~~Av~~~l~~g~~~T~Dlg----g---~~~T~e~~~av~~~l~ 359 (359)
+++||+++||+|.|||+.|||+|+||.++|+.|++||..++++| +.|+||. | .++|+||+|+|+++|+
T Consensus 333 k~aG~~~~Np~a~Ils~~~ml~~~Gw~eaa~li~~a~~~ti~~~-~vT~DlArl~~~~~~~v~tsEF~d~ii~~l~ 407 (407)
T COG0538 333 KYAGKDSTNPIASILSGTMMLRHRGWLEAADLIEKAVEDTIESG-KVTYDLARLMGGAKRYLSTSEFADAIIENLK 407 (407)
T ss_pred cccCcCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhC-ceeHHHHHhhCCCccceeHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999 5899994 4 5799999999999985
No 29
>KOG0786 consensus 3-isopropylmalate dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=4.9e-83 Score=592.33 Aligned_cols=324 Identities=29% Similarity=0.479 Sum_probs=294.6
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHHHHHc----CCCeeEEEEEecCc-cc----CCcHHHHHHHHhcCceeeccccCC-CC
Q 018224 28 SPRAVTLIPGDGIGPLVTNAVEQVMEAM----HAPIYFEKYEVHGD-MK----RVPQQVLDSIRKNKVCLKGGLKTP-VG 97 (359)
Q Consensus 28 ~~~~I~vi~GDGIGpEV~~~a~~vl~~~----~~~ie~~~~~~g~~-~~----~lp~et~~~~~~~da~l~G~~~~p-~~ 97 (359)
++|+|+++|||||||||+..+++||+++ ++.|+|++.++|++ .+ ++|+|++++.|++|++|+|+++.+ ++
T Consensus 3 ~~~~i~llpgd~ig~ev~s~a~~vlq~~~~l~~vefdf~~~~iggaald~~gvplpeet~~aak~sdavllgaigg~kw~ 82 (363)
T KOG0786|consen 3 KRYNITLLPGDGIGPEVISVAKNVLQKAGSLEGVEFDFEEMPIGGAALDLVGVPLPEETLTAAKKSDAVLLGAIGGYKWD 82 (363)
T ss_pred CcceEEEcCCCCcCHHHHHHHHHHHHHhccccceeeccccCcccccchhccCCCCCHHHHhhhhhcceeEeecccCcccC
Confidence 5799999999999999999999999997 68899999999987 54 999999999999999999999887 33
Q ss_pred CCc---ccchHHHHhhcCcEEEEEEeecCCCCC--CCc-----ccccEEEEecCCcceEeccceee-eCCEEEEEEeecH
Q 018224 98 GGV---SSLNVQLRKELDLYAALVNCFNLPGLP--TRH-----QNVDIVVIRENTEGEYSGLEHEV-VPGVVESLKVITK 166 (359)
Q Consensus 98 ~~~---~s~~~~LR~~ldlyanvRP~~~~pg~~--~~~-----~~iDivivREnteG~Y~g~~~~~-~~~va~~~~~~Tr 166 (359)
.++ ...++.||+.|.+|||+|||..+|.+- ++. +++|++||||.|+|+|+|..... .++++.++.+|+-
T Consensus 83 ~~~lrpe~gll~ir~~lkvfanlrp~~~~~qlvd~s~lk~e~aeg~d~mvvrel~ggiyfge~r~eng~gva~dte~Ya~ 162 (363)
T KOG0786|consen 83 KNHLRPEMGLLKIRRDLKVFANLRPATVLPQLVDASTLKKEVAEGVDMMVVRELTGGIYFGEPRNENGEGVAFDTEIYAA 162 (363)
T ss_pred cCCcChhhhHHHHHHHHHHHhcCCcchhhHhhhccccccHHHhcCcceEEeeeecCceeecCcccCCCcceeeccccccH
Confidence 332 356889999999999999999988652 222 58999999999999999987643 3579999999999
Q ss_pred HHHHHHHHHHHHHHHhcC-CCcEEEEEcCCchhhchHHHHHHHHHH-HhhCCceeeceeeHhHHHHHHHhCCCCcc-EEE
Q 018224 167 FCSERIAKYAFEYAYLNY-RKKVTAVHKANIMKLADGLFLESCREV-ATKYPSIKYNEIIVDNCCMQLVSKPEQFD-VMV 243 (359)
Q Consensus 167 ~~~eRiar~AFe~A~~r~-~~~Vt~v~KaNvl~~tdglf~~~~~ev-a~eypdI~~~~~~vD~~~~~Lv~~P~~fd-Viv 243 (359)
.++.||+|.||+.|++|. ..+++++||+||+. ++.|||+.+++. +.|||++++.|++||+++|+||++|.+|| +||
T Consensus 163 ~Ev~RIaR~Aa~~A~~~~pp~pl~slDKANVLa-aSrLWRKtV~~~~k~EyP~l~l~hqliDsAAM~Lvk~P~~lng~iv 241 (363)
T KOG0786|consen 163 HEVDRIARVAAETARKRRPPGPLCSLDKANVLA-ASRLWRKTVTKALKSEYPDLELSHQLIDSAAMQLVKDPKQLNGTIV 241 (363)
T ss_pred HHHHHHHHHHHHHHHhhCCCCCccccchhhHHH-HHHHHHHHHHHHHHhhCCCcchhhhhhhHHHHHHhcCchhcCceEE
Confidence 999999999999999973 36899999999997 679999998865 88999999999999999999999999999 999
Q ss_pred eCCcchhhHHHhhhhhcCCCCccceeeeC-----C-CcceEeccccCCCCCcccccccccCChhHHHHHHHHHHhh-cCC
Q 018224 244 TPNLYGNLVSNTAAGIAGGTGVMPGGNVG-----A-DTAVFEQGASAGNVGNEKVVEQKKANPVALLLSSAMMLRH-LQF 316 (359)
Q Consensus 244 ~~NlfGDILSDlaa~l~GglGl~psanig-----~-~~a~FEp~~~~~HGsApdiaGk~~ANP~a~Ils~ammL~~-lg~ 316 (359)
|.|+|||||||.++.+.||+||.|||+++ + .+++|||. |||||||+||+++||+|+|||++|||+| ||.
T Consensus 242 T~NiFGDIiSDEASvIpGSlGlLPSASLs~v~~~es~~gL~EPi----HGSAPDiagk~kvNPlaTILSAamlLkygLn~ 317 (363)
T KOG0786|consen 242 TNNIFGDIISDEASVIPGSLGLLPSASLSGVVSEESGPGLFEPI----HGSAPDIAGKDKVNPLATILSAAMLLKYGLNE 317 (363)
T ss_pred eccchhhhhccccccccCccccccchhhcCCcccccCCcccccC----CCCCCCcCCCCccChHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999998 2 27999999 9999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHHHcCcccCCCCCCCCcHHHHHHHHHHh
Q 018224 317 PSFADRLETAVKRVISEEKYRTKDLGGGCTTQQIVDAVIAN 357 (359)
Q Consensus 317 ~~~A~~i~~Av~~~l~~g~~~T~Dlgg~~~T~e~~~av~~~ 357 (359)
+++|++||+||..++..| ++|.||||..||.+.+++|.+.
T Consensus 318 pkeakaIEdAV~kvLd~G-~rTgDlgg~~st~~~~kav~EE 357 (363)
T KOG0786|consen 318 PKEAKAIEDAVVKVLDKG-FRTGDLGGPGSTLVGCKAVGEE 357 (363)
T ss_pred hhhHHHHHHHHHHHHhcc-ccccccCCCCcchhhHHHHHHH
Confidence 999999999999999999 8999999998877666666554
No 30
>PLN00096 isocitrate dehydrogenase (NADP+); Provisional
Probab=100.00 E-value=2.1e-72 Score=553.53 Aligned_cols=316 Identities=18% Similarity=0.218 Sum_probs=275.9
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHcCCCee-EEEEEecCc-cc----CCcHHHHHHHHhcCceeeccccCCCC---------
Q 018224 33 TLIPGDGIGPLVTNAVEQVMEAMHAPIY-FEKYEVHGD-MK----RVPQQVLDSIRKNKVCLKGGLKTPVG--------- 97 (359)
Q Consensus 33 ~vi~GDGIGpEV~~~a~~vl~~~~~~ie-~~~~~~g~~-~~----~lp~et~~~~~~~da~l~G~~~~p~~--------- 97 (359)
+.+.||.+-+-+|+..++-|-...++++ |++||+|.+ .+ .+.-++.++++++.+++|+|+-||..
T Consensus 2 v~~~gdemtr~~~~~i~~~li~p~~d~~~~~y~DL~~~~Rd~T~dqvt~daa~a~~~~~vgvKcatiTp~~~rv~e~~lk 81 (393)
T PLN00096 2 VYVAGEEMTRYTMDLILAKWIEPHVDTSAWEFFDLRAKNRDDTEDQVLRDVIEAGARLKAIFKEPTITPTADQVKRLGLK 81 (393)
T ss_pred eeecchHHHHHHHHHHHHhhccceeccccceeeccCCccccccCCcchHHHHHHHHHhCeeeeecccCCCHHHHHhhchh
Confidence 4678998888888877777777789996 999999987 33 78889999999999999999999964
Q ss_pred CCcccchHHHHhhcCc-EEEEEEeecCCCCCCCcccccEEEEecCCcceEeccceeee------------C---------
Q 018224 98 GGVSSLNVQLRKELDL-YAALVNCFNLPGLPTRHQNVDIVVIRENTEGEYSGLEHEVV------------P--------- 155 (359)
Q Consensus 98 ~~~~s~~~~LR~~ldl-yanvRP~~~~pg~~~~~~~iDivivREnteG~Y~g~~~~~~------------~--------- 155 (359)
+.|+|||.+||+.||. .++-+|+. +++++ |.=.-.++|-|+.-+|.|.. +.... +
T Consensus 82 ~~w~sPNgtiR~~l~G~tvfR~pi~-~~~i~-~~w~kpi~i~Rha~gd~y~a-~~~~~~~g~~~~~~~~~~g~~~~~~~~ 158 (393)
T PLN00096 82 KAWGSPNGAMRRGWNGITISRDTIH-IDGVE-LGYKKPVFFERHAVGGEYSA-GYKIVGKGTLVTTFVPEEGGKPIVVDD 158 (393)
T ss_pred hhcCCCcHHHHhhcCCceEeeCCEe-cCCCC-CCccCceEEEeeccCCcccc-ceEecCCcEEEEEEEeCCCCCceEEEE
Confidence 4788999999999999 88888876 34443 22235699999999999987 43210 1
Q ss_pred ------CEEEEEEeecHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHH-hhC-----------Cc
Q 018224 156 ------GVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVA-TKY-----------PS 217 (359)
Q Consensus 156 ------~va~~~~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva-~ey-----------pd 217 (359)
+-+.-.+.+|.+.++||+|+||+||++|+ ++||++||+||||+++|+|+ +|+||+ ++| |+
T Consensus 159 ~~f~~~~gv~~~~~N~~~si~RiAr~AF~~A~~r~-~~Vt~v~KaNILK~tdg~f~-if~eVa~~eyk~~f~~~~~~~p~ 236 (393)
T PLN00096 159 RTITDDLNAVVTYHNPLDNVHHLARIFFGRCLDAG-IVPYVVTKKTVFKWQEPFWE-IMKKVFDEEFKSKFVDKGVMKSG 236 (393)
T ss_pred EecCCCCeEEEEeccCHHHHHHHHHHHHHHHHHhC-CcEEEEeCccccccchHHHH-HHHHHHHHHHhhhhhhcccCCCc
Confidence 11223479999999999999999999984 56999999999999999998 999996 788 77
Q ss_pred eeeceeeHhHHHHHHHhCCCCccEEEeCCcchhhHHHhhhhhcCCCCccceeeeCCC---c--ceEeccccCCCCCcccc
Q 018224 218 IKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGGNVGAD---T--AVFEQGASAGNVGNEKV 292 (359)
Q Consensus 218 I~~~~~~vD~~~~~Lv~~P~~fdViv~~NlfGDILSDlaa~l~GglGl~psanig~~---~--a~FEp~~~~~HGsApdi 292 (359)
|+++|++||+|+||||++|++||||||+|||||||||++|+++|||||+||+|+|++ . ++|||+ |||||||
T Consensus 237 V~~e~~lIDa~~~qlVk~P~~fdViv~~NlfGDIlSDlaA~l~GsLGl~pSanig~d~dg~~~a~fEp~----HGSApdi 312 (393)
T PLN00096 237 DELVHLLSDAATMKLVVWTDGGFGMAAHNYDGDVLTDELAQVHKSPGFITSNLVGVDENGTLIKEFEAS----HGTVTDM 312 (393)
T ss_pred eEEEeeeHHHHHHHHHhCcccCCEEEECcccchHHHHHHHHhcCCcccccccccCCccCCccceEEEcC----CCChHHh
Confidence 999999999999999999999999999999999999999999999999999999943 3 899999 9999999
Q ss_pred c-----cc-ccCChhHHHHHHHHHHhhc----CC----HHHHHHHHHHHHHHHHcCcccCCCCCC--CCcHHHHHHHHHH
Q 018224 293 V-----EQ-KKANPVALLLSSAMMLRHL----QF----PSFADRLETAVKRVISEEKYRTKDLGG--GCTTQQIVDAVIA 356 (359)
Q Consensus 293 a-----Gk-~~ANP~a~Ils~ammL~~l----g~----~~~A~~i~~Av~~~l~~g~~~T~Dlgg--~~~T~e~~~av~~ 356 (359)
+ || ++|||+|+|||++|||+|+ |+ .++|++|++||.+++++| ++|+||+| .++|+||+++|++
T Consensus 313 ag~~~~Gk~~~ANPiA~IlA~a~mL~~~~~l~g~~~~l~~~A~~Ie~Av~~tie~G-~~T~DL~g~~~~tT~ef~daI~~ 391 (393)
T PLN00096 313 DEARLRGEETSLNPLGMVEGLIGAMNHAADVHGGKERVHPFTAKLRAVIHKLFREG-RGTRDLCGAGGLTTEQFIDAVAE 391 (393)
T ss_pred hhhhhcCCCCccChHHHHHHHHHHHHhhcccCCCchhhHHHHHHHHHHHHHHHhcC-CcCcCCCCCCCCCHHHHHHHHHH
Confidence 9 89 5999999999999999998 66 669999999999999999 78999955 7899999999998
Q ss_pred hc
Q 018224 357 NL 358 (359)
Q Consensus 357 ~l 358 (359)
+|
T Consensus 392 ~L 393 (393)
T PLN00096 392 EL 393 (393)
T ss_pred hC
Confidence 76
No 31
>KOG1526 consensus NADP-dependent isocitrate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=3.9e-40 Score=312.51 Aligned_cols=323 Identities=23% Similarity=0.262 Sum_probs=280.2
Q ss_pred cceEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEecCc-cc----CCcHHHHHHHHhcCceeeccccCCCC------
Q 018224 29 PRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGD-MK----RVPQQVLDSIRKNKVCLKGGLKTPVG------ 97 (359)
Q Consensus 29 ~~~I~vi~GDGIGpEV~~~a~~vl~~~~~~ie~~~~~~g~~-~~----~lp~et~~~~~~~da~l~G~~~~p~~------ 97 (359)
...|+.+.||.+-+-||...+.-|....++++..+||+|-+ .+ .+.-++.+++.++.+.+|+++.||..
T Consensus 18 ~~pvVemdGDEmTRiIW~~Ik~KLIlPyldldlkyyDLgie~RD~T~DqVTid~A~A~lky~V~iKCATITPDEaRv~Ef 97 (422)
T KOG1526|consen 18 ANPVVEMDGDEMTRIIWKLIKEKLILPYLDLDLKYYDLGIENRDATNDQVTIDAAEAILKYNVGIKCATITPDEARVEEF 97 (422)
T ss_pred cCCeEEecccHHHHHHHHHHHhhcccceeeeceeeeecCCcccccccceeeHHHHHHHHHhCceeEEeecCCcHHHHHHh
Confidence 46899999998888888888888887899999999999987 33 78889999999999999999999964
Q ss_pred ---CCcccchHHHHhhcCcEEEEEEeecCCCCCCCcc--cccEEEEecCCcceEeccceee------------e------
Q 018224 98 ---GGVSSLNVQLRKELDLYAALVNCFNLPGLPTRHQ--NVDIVVIRENTEGEYSGLEHEV------------V------ 154 (359)
Q Consensus 98 ---~~~~s~~~~LR~~ldlyanvRP~~~~pg~~~~~~--~iDivivREnteG~Y~g~~~~~------------~------ 154 (359)
+.|+|||.++|..|+..++-+|+. .|++|...+ ...|+|-|+.-++.|....... .
T Consensus 98 ~LkkMWkSPNGTIRNILgGTVFREpIi-~kniPrlVpgW~kPI~IGRHAfgDQYkatD~vv~~~gkl~l~f~~~dg~~~~ 176 (422)
T KOG1526|consen 98 NLKKMWKSPNGTIRNILGGTVFREPII-CKNIPRLVPGWTKPIIIGRHAFGDQYKATDFVVPGPGKLELVFTPSDGTQKV 176 (422)
T ss_pred hhHHHhcCCCcchhhhcCceeecccee-cCCcccccCCCccceEEeeccccccceeeeEeecCCCeEEEEEecCCCCcce
Confidence 478899999999999999999986 344433222 3569999999999997644221 0
Q ss_pred ---------CCEEEEEEeecHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHH-HhhCC------ce
Q 018224 155 ---------PGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREV-ATKYP------SI 218 (359)
Q Consensus 155 ---------~~va~~~~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~ev-a~eyp------dI 218 (359)
+|+ ...+.+|.+.++-+++..|++|.++ +-++++.+|..++|.+||-|.++|+|+ .++|. +|
T Consensus 177 ~~~V~~f~~~G~-~~~m~~~dds~~~FAhssf~~Al~k-k~pLylsTKNTILKkYDgrFKdiFqeiye~~yk~kfe~~~I 254 (422)
T KOG1526|consen 177 TLKVYDFKGSGV-AAMMYNTDDSIRGFAHSSFQYALQK-KWPLYLSTKNTILKKYDGRFKDIFQEIYEKQYKSKFEALGI 254 (422)
T ss_pred eEEEEecCCCce-eEEEeeccchhhHHHHHHHHHHHHh-cCceeeeccchHHHHhCChHHHHHHHHHHHHHHHHHHhhcc
Confidence 122 2456788888999999999999997 679999999999999999999999999 56664 69
Q ss_pred eeceeeHhHHHHHHHhCCCCccEEEeCCcchhhHHHhhhhhcCCCCccceeeeCCCcceEeccccCCCCCccccc-----
Q 018224 219 KYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGGNVGADTAVFEQGASAGNVGNEKVV----- 293 (359)
Q Consensus 219 ~~~~~~vD~~~~~Lv~~P~~fdViv~~NlfGDILSDlaa~l~GglGl~psanig~~~a~FEp~~~~~HGsApdia----- 293 (359)
+|||++||.|.+|++++-++| ||.|.|+.||+.||+.||-.|||||+.|..+.++...||..++ ||+.....
T Consensus 255 wYEHRLIDDmVAqa~KS~GGf-vwAcKNYDGDVqSD~vAQg~GSLGlMTSVLv~pdGKT~EaEAA--HGTVtRHyr~hqk 331 (422)
T KOG1526|consen 255 WYEHRLIDDMVAQAMKSEGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTSVLVCPDGKTVEAEAA--HGTVTRHYRMHQK 331 (422)
T ss_pred hhhhhhHHHHHHHHHhcCCce-EEEeecCCCchhhhHHHhcccchhhheeEEEcCCCCeeeeecc--ccchhHHHHHHhc
Confidence 999999999999999999999 9999999999999999999999999999999999889999888 99988764
Q ss_pred cc-ccCChhHHHHHHHHHHhhcC-------CHHHHHHHHHHHHHHHHcCcccCCCC----CCC------CcHHHHHHHHH
Q 018224 294 EQ-KKANPVALLLSSAMMLRHLQ-------FPSFADRLETAVKRVISEEKYRTKDL----GGG------CTTQQIVDAVI 355 (359)
Q Consensus 294 Gk-~~ANP~a~Ils~ammL~~lg-------~~~~A~~i~~Av~~~l~~g~~~T~Dl----gg~------~~T~e~~~av~ 355 (359)
|+ ...||||+|+||..-|.|-| +..+|+.||.|+-.++++| ..|.|| +|. ++|+||.|+|.
T Consensus 332 G~eTSTN~IASIFAWtRgl~hR~kLD~n~~l~~F~~~LE~aci~tve~G-~MTKDLal~i~g~~~r~~y~~T~eFidav~ 410 (422)
T KOG1526|consen 332 GQETSTNSIASIFAWTRGLAHRAKLDNNEALAKFANALEKACIETVESG-KMTKDLALCIHGKVERSDYLNTEEFIDAVA 410 (422)
T ss_pred CCCccCcchHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhc-cchHhHHHHhcCCccccccccHHHHHHHHH
Confidence 55 89999999999999999954 3588999999999999999 589999 343 68999999999
Q ss_pred Hhc
Q 018224 356 ANL 358 (359)
Q Consensus 356 ~~l 358 (359)
.+|
T Consensus 411 ~~L 413 (422)
T KOG1526|consen 411 SNL 413 (422)
T ss_pred HHH
Confidence 887
No 32
>PF03971 IDH: Monomeric isocitrate dehydrogenase; InterPro: IPR004436 This family of enzymes catalyses the NADP(+)-dependent oxidative decarboxylation of isocitrate to form 2-oxoglutarate, CO2, and NADPH within the Krebs cycle (1.1.1.42 from EC). Thus this enzyme supplies the cell with a key intermediate in energy metabolism, and precursors for biosynthetic pathways. The activity of this enzyme, which is controlled by phosphorylation, helps regulate carbon flux between the Krebs cycle and the glyoxylate bypass, which is an alternate route that accumulates carbon for biosynthesis when acetate is the sole carbon source for growth []. The phosphorylation state of this enzyme is controlled by isocitrate dehydrogenase kinase/phosphatase. This family has been found in a number of bacterial species including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. The structure of isocitrate dehydrogenase from Azotobacter vinelandii (P16100 from SWISSPROT) has been determined []. This molecule consists of two distinct domains, a small domain and a large domain, with a folding topology similar to that of dimeric isocitrate dehydrogenase from Escherichia coli (P08200 from SWISSPROT). The structure of the large domain repeats a motif observed in the dimeric enzyme. Such a fusional structure by domain duplication enables a single polypeptide chain to form a structure at the catalytic site that is homologous to the dimeric enzyme, the catalytic site of which is located at the interface of two identical subunits.; GO: 0004450 isocitrate dehydrogenase (NADP+) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process; PDB: 1ITW_D 1J1W_A 3MBC_A 2B0T_A.
Probab=96.28 E-value=0.12 Score=54.68 Aligned_cols=180 Identities=18% Similarity=0.186 Sum_probs=109.1
Q ss_pred ceeeeCCEEEEEEeecHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHhhC--Cceeeceee-Hh
Q 018224 150 EHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKY--PSIKYNEII-VD 226 (359)
Q Consensus 150 ~~~~~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~ey--pdI~~~~~~-vD 226 (359)
+|.+..|-.+..+-.-...++..++.|..+||..|-.-|.-.|+.-. -|.-..+-+++.-++| .++++.-|- +|
T Consensus 443 eh~Ve~GDIwRmcq~KD~pI~DWVkLAV~Rar~tg~paiFWLD~~RA---HDa~lI~kV~~yL~~hdt~gldi~Im~P~~ 519 (735)
T PF03971_consen 443 EHEVEAGDIWRMCQTKDAPIRDWVKLAVNRARATGTPAIFWLDENRA---HDAELIKKVEKYLKDHDTSGLDIRIMSPVE 519 (735)
T ss_dssp EEEE-TT-EEEEEEE-HHHHHHHHHHHHHHHHHHT--EEEE--TTSH---HHHHHHHHHHHHHTTS--TT--EEEE-HHH
T ss_pred EeeecCCcchhhhcccCchHHHHHHHHHHHHHhhCCCeEEecCCCCc---cHHHHHHHHHHHHHhcCCCCCceEeeCHHH
Confidence 45555666666666667788999999999999987666766776543 2544455555555555 245555554 56
Q ss_pred HHHHHHHhCCCCcc-EEEeCCcchhhHHHhhhhh-cCC-CCccceeeeCCCcceEeccccCCCCCccccccc------cc
Q 018224 227 NCCMQLVSKPEQFD-VMVTPNLYGNLVSNTAAGI-AGG-TGVMPGGNVGADTAVFEQGASAGNVGNEKVVEQ------KK 297 (359)
Q Consensus 227 ~~~~~Lv~~P~~fd-Viv~~NlfGDILSDlaa~l-~Gg-lGl~psanig~~~a~FEp~~~~~HGsApdiaGk------~~ 297 (359)
++-..|-+=-.+-| +-||.|..=|+|+||.--| .|. -=|..-.=+=...++||+. . .||||..+-| =.
T Consensus 520 A~~~sler~r~G~dTISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLm~GGGLFETG-A--GGSAPKHVqQf~eEnhLR 596 (735)
T PF03971_consen 520 ATRFSLERIRAGKDTISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLMNGGGLFETG-A--GGSAPKHVQQFVEENHLR 596 (735)
T ss_dssp HHHHHHHHHHTT---EEEE-HHHHHHHHHHHHHHHHS-STTSEEEEEBTTS-EEEES--S--S---HHHHHHHCCCS---
T ss_pred HHHHHHHHHHcCCCeEEeechHHHhhhcchhhhhhhccchhhhhhhhcccCCceeccC-C--CCCccHHHHHHHHcCccc
Confidence 66666644444556 7799999999999998765 332 2221111111245899996 4 8999998633 24
Q ss_pred CChhHHHHHHHHHHhhcCCH-------HHHHHHHHHHHHHHHcCc
Q 018224 298 ANPVALLLSSAMMLRHLQFP-------SFADRLETAVKRVISEEK 335 (359)
Q Consensus 298 ANP~a~Ils~ammL~~lg~~-------~~A~~i~~Av~~~l~~g~ 335 (359)
=+-+|-+||.+--|+||+.. --|+.|.+|..+.|++++
T Consensus 597 WDSLGEFlALa~Sle~l~~~~~n~ka~vLa~tLd~At~~~L~n~k 641 (735)
T PF03971_consen 597 WDSLGEFLALAVSLEHLAQKTGNPKAKVLADTLDAATGKFLENNK 641 (735)
T ss_dssp --THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHTT-
T ss_pred ccchhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCC
Confidence 46689999999999998752 458899999999999985
No 33
>PF04166 PdxA: Pyridoxal phosphate biosynthetic protein PdxA; InterPro: IPR005255 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents 4-hydroxythreonine-4-phosphate dehydrogenase (PdxA, 1.1.1.262 from EC). PdxA takes part in vitamin B6 biosynthesis, forming pyridoxine 5'-phosphate from 4-(phosphohydroxy)-L-threonine and 1-deoxy-D-xylulose-5-phosphate.; GO: 0050570 4-hydroxythreonine-4-phosphate dehydrogenase activity, 0051287 NAD binding, 0008615 pyridoxine biosynthetic process, 0055114 oxidation-reduction process; PDB: 1YXO_A 1PS6_A 1PS7_C 1PTM_B 1R8K_B 2HI1_A 3LXY_A 3TSN_B.
Probab=95.96 E-value=0.0057 Score=60.03 Aligned_cols=136 Identities=18% Similarity=0.113 Sum_probs=73.3
Q ss_pred EeecHHHHHHHHHHHHHHHHh-cCC-CcEEEEEcCCchhhc--hHHHH-H----HHHHHH-hhCCceeece-eeHhHHHH
Q 018224 162 KVITKFCSERIAKYAFEYAYL-NYR-KKVTAVHKANIMKLA--DGLFL-E----SCREVA-TKYPSIKYNE-IIVDNCCM 230 (359)
Q Consensus 162 ~~~Tr~~~eRiar~AFe~A~~-r~~-~~Vt~v~KaNvl~~t--dglf~-~----~~~eva-~eypdI~~~~-~~vD~~~~ 230 (359)
+.+|.+.+.+.++...+.-++ -|. ++-..|-=-| ++. .|+|= | +.-.+. .+-.+|.+.- .--|++-.
T Consensus 150 ~~it~~~i~~~i~~~~~~l~~~~gi~~PrIaV~gLN--PHaGe~G~~G~EE~~~I~PAI~~~~~~gi~v~GP~paDt~F~ 227 (298)
T PF04166_consen 150 KLITKERILEKIRLLHKSLKRDFGIENPRIAVAGLN--PHAGEGGLFGREEIEIIIPAIEEARAEGIDVFGPYPADTVFG 227 (298)
T ss_dssp HH--HHHHHHHHHHHHHHHHHTTT-SS-EEEEE-SS--GGGGTTTTTBSHHHHTHHHHHHHHHHTTHEEEEEE-HHHHTS
T ss_pred HhcCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeC--CCCCCCCCCcHhHHHHHHHHHHHHHhCCCceECCCccHHhhh
Confidence 367888888888877665555 222 2222222233 232 45552 2 222221 1123555443 33576655
Q ss_pred HHHhCCCCccEEEeCCcchhhHHHhhhhhcCCCCccceeeeCCCcceEeccccCCCCCcccccccccCChhHHHHHHHH
Q 018224 231 QLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGGNVGADTAVFEQGASAGNVGNEKVVEQKKANPVALLLSSAM 309 (359)
Q Consensus 231 ~Lv~~P~~fdViv~~NlfGDILSDlaa~l~GglGl~psanig~~~a~FEp~~~~~HGsApdiaGk~~ANP~a~Ils~am 309 (359)
+- .-++||++|+ ||= |.+--=.-.+++--+.|+.-.-.+--+... ||+|.||||||+|||.+++.|.-+
T Consensus 228 ~~--~~~~fD~vva--MYH----DQGlip~K~l~f~~gVnvTlGLP~iRTS~D--HGTAfDIAGkg~A~~~s~~~Ai~~ 296 (298)
T PF04166_consen 228 KA--NRGKFDAVVA--MYH----DQGLIPFKLLGFDEGVNVTLGLPIIRTSPD--HGTAFDIAGKGIADPSSMIEAIKL 296 (298)
T ss_dssp HH--HHTT-SEEEE--SSH----HHHHHHHHHHCTTTSEEEEESSSSEEEEES--S-S-CCGTTTTTS-THHHHHHHHH
T ss_pred cc--hhccCCEEEE--eec----ccCccceeecccccceEEecCCCeeeecCC--CCchhhhhCCCCCChHHHHHHHHH
Confidence 54 3478999998 453 454444555666677777644333333333 999999999999999999988754
No 34
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional
Probab=95.93 E-value=0.011 Score=58.81 Aligned_cols=137 Identities=17% Similarity=0.155 Sum_probs=82.4
Q ss_pred EeecHHHHHHHHHHHHHHHHhcCC--CcEE-EEEcCCchhhchHHH-HHHHHHH------HhhCCceee-ceeeHhHHHH
Q 018224 162 KVITKFCSERIAKYAFEYAYLNYR--KKVT-AVHKANIMKLADGLF-LESCREV------ATKYPSIKY-NEIIVDNCCM 230 (359)
Q Consensus 162 ~~~Tr~~~eRiar~AFe~A~~r~~--~~Vt-~v~KaNvl~~tdglf-~~~~~ev------a~eypdI~~-~~~~vD~~~~ 230 (359)
+.+|.+.+.+.++...+.-++-|. -|+- +.=..+.=. .|+| +|..+.+ +++ .++++ -..--|++..
T Consensus 176 ~~it~e~i~~~i~~~~~~l~~~gi~~PrIaV~gLNPHAGE--~G~~G~EE~~iI~PAi~~~~~-~G~~v~GP~paDt~F~ 252 (326)
T PRK03371 176 DTLNTARVETVIGIADTFLKRVGYVKPRIAVAGVNPHAGE--NGLFGDEEIRIVTPAIEAMRA-KGMDVYGPCPPDTVFL 252 (326)
T ss_pred HHhCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCCCCCC--CCCCcHHHHHHHHHHHHHHHH-CCCcccCCCCchhhcc
Confidence 367888888888777665553332 2222 222222221 4666 3332222 111 13332 2334566655
Q ss_pred HHHhCCCCccEEEeCCcchhhHHHhhhhhcCCCCccceeeeCCCcceEeccccCCCCCcccccccccCChhHHHHHHHHH
Q 018224 231 QLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGGNVGADTAVFEQGASAGNVGNEKVVEQKKANPVALLLSSAMM 310 (359)
Q Consensus 231 ~Lv~~P~~fdViv~~NlfGDILSDlaa~l~GglGl~psanig~~~a~FEp~~~~~HGsApdiaGk~~ANP~a~Ils~amm 310 (359)
+-.+ ++||++|| || -|.+--=.-.+++--+.|+.-.-.+--+... ||||.||||||+|||.+++.|.-+-
T Consensus 253 ~~~~--~~~D~vva--MY----HDQGliP~K~l~F~~gVNvTlGLP~iRTS~D--HGTAfDIAGkG~A~~~S~~~Ai~lA 322 (326)
T PRK03371 253 QAYE--GQYDMVVA--MY----HDQGHIPLKLLGFYDGVNITAGLPFIRTSAD--HGTAFDIAWTGKAKSESMAVSIKLA 322 (326)
T ss_pred cccc--cCCCEEEE--cc----ccccchhheecccccceEEecCCCeeEecCC--CCchhhhhcCCcCCHHHHHHHHHHH
Confidence 4444 57999998 34 3455555677888888888755444444444 9999999999999999999887664
Q ss_pred H
Q 018224 311 L 311 (359)
Q Consensus 311 L 311 (359)
.
T Consensus 323 ~ 323 (326)
T PRK03371 323 M 323 (326)
T ss_pred H
Confidence 3
No 35
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed
Probab=95.90 E-value=0.011 Score=58.83 Aligned_cols=137 Identities=12% Similarity=0.113 Sum_probs=82.9
Q ss_pred EeecHHHHHHHHHHHHHHHHhcCC--CcEEEE-EcCCchhhchHHH-HHH-------HHHHHhhCCceee-ceeeHhHHH
Q 018224 162 KVITKFCSERIAKYAFEYAYLNYR--KKVTAV-HKANIMKLADGLF-LES-------CREVATKYPSIKY-NEIIVDNCC 229 (359)
Q Consensus 162 ~~~Tr~~~eRiar~AFe~A~~r~~--~~Vt~v-~KaNvl~~tdglf-~~~-------~~eva~eypdI~~-~~~~vD~~~ 229 (359)
+.+|.+.+.+.++.+.+.-++.|- -|+-+. =..+.= -.|+| +|. .++..++ ++++ -..--|++.
T Consensus 177 ~~it~e~i~~~i~~~~~~l~~~gi~~PrIaV~gLNPHAG--E~G~~G~EE~~iI~PAI~~~~~~--G~~v~GP~paDt~F 252 (332)
T PRK00232 177 DAITPERLEEVIRILHADLRRKGIAEPRIAVCGLNPHAG--EGGHFGREEIDIIIPALEELRAE--GINLVGPLPADTLF 252 (332)
T ss_pred HHhCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeeCCCCC--CCCCCCHHHHHHHHHHHHHHHhC--CCCcCCCCCchhhc
Confidence 467888888888888776553332 233221 112221 13555 332 2222222 3332 233456665
Q ss_pred HHHHhCCCCccEEEeCCcchhhHHHhhhhhcCCCCccceeeeCCCcceEeccccCCCCCcccccccccCChhHHHHHHHH
Q 018224 230 MQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGGNVGADTAVFEQGASAGNVGNEKVVEQKKANPVALLLSSAM 309 (359)
Q Consensus 230 ~~Lv~~P~~fdViv~~NlfGDILSDlaa~l~GglGl~psanig~~~a~FEp~~~~~HGsApdiaGk~~ANP~a~Ils~am 309 (359)
.+-.+ +.||++|| || -|.+--=+-.+++--+.|+.-.-.+--+... ||||.||||||+|||.+++.|.-+
T Consensus 253 ~~~~~--~~~D~vva--MY----HDQGliP~K~l~F~~gVNvTlGLPiiRTS~D--HGTAfDIAGkg~A~~~S~~~Ai~l 322 (332)
T PRK00232 253 QPAYL--GDADAVLA--MY----HDQGLPVLKYLGFGRGVNITLGLPFIRTSVD--HGTALDLAGKGIADVGSFITALNL 322 (332)
T ss_pred ccccc--CCCCEEEE--Cc----ccccchhheecccCcceEEecCCCeeEeCCC--CcchhhhhcCCCCCHHHHHHHHHH
Confidence 55444 57999998 34 3455445667777788888755444444444 999999999999999999988776
Q ss_pred HHh
Q 018224 310 MLR 312 (359)
Q Consensus 310 mL~ 312 (359)
..+
T Consensus 323 A~~ 325 (332)
T PRK00232 323 AIR 325 (332)
T ss_pred HHH
Confidence 544
No 36
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=95.87 E-value=0.011 Score=58.79 Aligned_cols=137 Identities=12% Similarity=0.062 Sum_probs=85.5
Q ss_pred EeecHHHHHHHHHHHHHHHHhcCC--CcEE-EEEcCCchhhchHHH-HHH-------HHHHHhhCCceeec-eeeHhHHH
Q 018224 162 KVITKFCSERIAKYAFEYAYLNYR--KKVT-AVHKANIMKLADGLF-LES-------CREVATKYPSIKYN-EIIVDNCC 229 (359)
Q Consensus 162 ~~~Tr~~~eRiar~AFe~A~~r~~--~~Vt-~v~KaNvl~~tdglf-~~~-------~~eva~eypdI~~~-~~~vD~~~ 229 (359)
+.+|.+.+.+.++.+.+.-+.-|. .|+- +.=..+.=. .|+| +|. .++..+ .+++++ .+--|++.
T Consensus 177 ~~it~e~i~~~i~~~~~~l~~~gi~~PrIaV~GLNPHAGE--~G~~G~EE~~iI~PAI~~~~~--~g~~v~GP~paDt~F 252 (332)
T PRK03743 177 DYVTKERVLDYIQRCTKALEKLGIKNPKIAVAGLNPHSGE--HGLFGDEEVDEIIPAVEAAQE--MGINVEGPVPADSVF 252 (332)
T ss_pred HHhCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCCCCCC--CCCCcHHHHHHHHHHHHHHHH--CCCcccCCCCchhhc
Confidence 467888888888888876664332 2332 222223221 3566 332 222222 233332 33457665
Q ss_pred HHHHhCCCCccEEEeCCcchhhHHHhhhhhcCCCCccceeeeCCCcceEeccccCCCCCcccccccccCChhHHHHHHHH
Q 018224 230 MQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGGNVGADTAVFEQGASAGNVGNEKVVEQKKANPVALLLSSAM 309 (359)
Q Consensus 230 ~~Lv~~P~~fdViv~~NlfGDILSDlaa~l~GglGl~psanig~~~a~FEp~~~~~HGsApdiaGk~~ANP~a~Ils~am 309 (359)
.+-.+ +.||++|| || -|.+--=.-.+++-.+.|+.-.-.+--+... ||||-||||||+|||.+++.|.-+
T Consensus 253 ~~~~~--~~~D~vva--MY----HDQGliP~K~l~F~~gVNvTlGLP~iRTS~D--HGTAfDIAGkg~A~~~S~~~Ai~l 322 (332)
T PRK03743 253 HLALQ--GRYDAVLS--LY----HDQGHIATKTLDFERTIAITNGLPFLRTSVD--HGTAFDIAGTGKASSVSMEEAILL 322 (332)
T ss_pred ccccc--cCCCEEEE--cc----cccCChhheecccCCceEEecCCCeeEeCCC--CcchhhhhcCCCCCHHHHHHHHHH
Confidence 55444 57999998 34 4455555677788888888755444444444 999999999999999999988876
Q ss_pred HHh
Q 018224 310 MLR 312 (359)
Q Consensus 310 mL~ 312 (359)
..+
T Consensus 323 A~~ 325 (332)
T PRK03743 323 AAK 325 (332)
T ss_pred HHH
Confidence 544
No 37
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=95.78 E-value=0.013 Score=58.27 Aligned_cols=138 Identities=9% Similarity=0.028 Sum_probs=85.7
Q ss_pred EeecHHHHHHHHHHHHHHHHh-cC--CCcEEE-EEcCCchhhchHHH-HHHHHHH------HhhCCceee-ceeeHhHHH
Q 018224 162 KVITKFCSERIAKYAFEYAYL-NY--RKKVTA-VHKANIMKLADGLF-LESCREV------ATKYPSIKY-NEIIVDNCC 229 (359)
Q Consensus 162 ~~~Tr~~~eRiar~AFe~A~~-r~--~~~Vt~-v~KaNvl~~tdglf-~~~~~ev------a~eypdI~~-~~~~vD~~~ 229 (359)
+.+|.+.+.+.++...+.-++ -| +-|+-+ .=..+.=. .|+| +|..+.+ ++. .++.+ -.+--|++.
T Consensus 172 ~~it~e~i~~~i~l~~~~l~~~~gi~~PrIaV~GLNPHAGE--~G~~G~EE~~iI~PAi~~~~~-~Gi~v~GP~paDt~F 248 (329)
T PRK01909 172 AALTIDGLVETLAIIDRDLRRDFGLAAPRILVTGLNPHAGE--NGYLGREEIDVIEPALARARA-AGIDARGPYPADTLF 248 (329)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCCCCCC--CCCCcHHHHHHHHHHHHHHHH-CCCCccCCCCchhhc
Confidence 467888888888888876663 22 223322 22222221 4666 4322222 111 23332 244457776
Q ss_pred HHHHhCCCCccEEEeCCcchhhHHHhhhhhcCCCCccceeeeCCCcceEeccccCCCCCcccccccccCChhHHHHHHHH
Q 018224 230 MQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGGNVGADTAVFEQGASAGNVGNEKVVEQKKANPVALLLSSAM 309 (359)
Q Consensus 230 ~~Lv~~P~~fdViv~~NlfGDILSDlaa~l~GglGl~psanig~~~a~FEp~~~~~HGsApdiaGk~~ANP~a~Ils~am 309 (359)
.+-.+ +.||++|| || -|.+---.-.+++--+.|+.-.-.+--+... ||||.||||||+|||.+++.|.-+
T Consensus 249 ~~~~~--~~~D~vva--MY----HDQGliP~K~l~F~~gVNvTlGLP~iRTSvD--HGTAfDIAGkg~A~~~S~~~Ai~l 318 (329)
T PRK01909 249 QPRYL--EDADCVLA--MF----HDQGLPVLKYATFGEGINVTLGLPIIRTSVD--HGTALDLAGTGRADPGSMIAAIDT 318 (329)
T ss_pred ccccc--cCCCEEEE--cc----ccccchhheecccCcceEEecCCCeeEeCCC--CcchhhhhcCCCCCHHHHHHHHHH
Confidence 66555 57999998 34 3555555677888888888755444444444 999999999999999999988776
Q ss_pred HHh
Q 018224 310 MLR 312 (359)
Q Consensus 310 mL~ 312 (359)
-.+
T Consensus 319 A~~ 321 (329)
T PRK01909 319 AVT 321 (329)
T ss_pred HHH
Confidence 544
No 38
>PRK02746 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=95.77 E-value=0.013 Score=58.64 Aligned_cols=141 Identities=12% Similarity=0.064 Sum_probs=86.0
Q ss_pred EeecHHHHHHHHHHHHHHHHh-cC--CCcEEEE-EcCCchhhchHHH-HH-------HHHHHHhhCCceeec-eeeHhHH
Q 018224 162 KVITKFCSERIAKYAFEYAYL-NY--RKKVTAV-HKANIMKLADGLF-LE-------SCREVATKYPSIKYN-EIIVDNC 228 (359)
Q Consensus 162 ~~~Tr~~~eRiar~AFe~A~~-r~--~~~Vt~v-~KaNvl~~tdglf-~~-------~~~eva~eypdI~~~-~~~vD~~ 228 (359)
+.+|.+.+.+.++.+.+.-++ -| +-|+-+. =..+.-. .|+| +| ..++..++.+++++. ..--|++
T Consensus 179 ~~it~~~I~~~i~~~~~~l~~~~gi~~PrIaV~GLNPHAGE--~G~~G~EE~~iI~PAIe~~r~~g~g~~v~GP~paDt~ 256 (345)
T PRK02746 179 KTLTPELITSKLDLLIDFLQRDFGIEKPRIAIAGLNPHAGE--QGQLGTEEKDWLIPWLESWRQKNPDIQLLGPIPPDTC 256 (345)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHcCCCCCcEEEEeeCCCCCC--CCCCcHHHHHHHHHHHHHHHhcCCCceeeCCCCchhh
Confidence 367778887777777665542 22 2233322 2222221 3555 32 233333343345443 3446887
Q ss_pred HHHHHh-CC-----CCccEEEeCCcchhhHHHhhhhhcCCCCccceeeeCCCcceEeccccCCCCCcccccccccCChhH
Q 018224 229 CMQLVS-KP-----EQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGGNVGADTAVFEQGASAGNVGNEKVVEQKKANPVA 302 (359)
Q Consensus 229 ~~~Lv~-~P-----~~fdViv~~NlfGDILSDlaa~l~GglGl~psanig~~~a~FEp~~~~~HGsApdiaGk~~ANP~a 302 (359)
..+-.+ ++ +.||++|| || -|.+--=.-.+++--+.|+.-.-.+--+... ||||.||||||+|||.+
T Consensus 257 F~~~~~~~~~~~~~~~~D~vva--MY----HDQGliP~K~l~F~~gVNvTlGLP~iRTS~D--HGTAfDIAGkg~A~~~S 328 (345)
T PRK02746 257 WVSPAQAWYGKGVAEAPDGYLA--LY----HDQGLIPVKLMAFDRAVNTTIGLPFIRTSPD--HGTAFDIAGKGIARPQS 328 (345)
T ss_pred ccccccccccccccCCCCEEEE--Cc----ccCCChhheeeccCcceEEecCCCeeEeCCC--CcchhhhhcCCCCCHHH
Confidence 776655 22 57999998 44 3455555677788888888755444444444 99999999999999999
Q ss_pred HHHHHHHHHh
Q 018224 303 LLLSSAMMLR 312 (359)
Q Consensus 303 ~Ils~ammL~ 312 (359)
|+.|.-+..+
T Consensus 329 ~~~Ai~lA~~ 338 (345)
T PRK02746 329 MKAAIKLAWE 338 (345)
T ss_pred HHHHHHHHHH
Confidence 9988776544
No 39
>TIGR00557 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase. This model represents PdxA, an NAD+-dependent 4-hydroxythreonine 4-phosphate dehydrogenase (EC 1.1.1.262) active in pyridoxal phosphate biosynthesis.
Probab=95.69 E-value=0.015 Score=57.57 Aligned_cols=135 Identities=13% Similarity=0.110 Sum_probs=82.2
Q ss_pred eecHHHHHHHHHHHHHHHHh-cC--CCcEE-EEEcCCchhhchHHH-HH-------HHHHHHhhCCceee-ceeeHhHHH
Q 018224 163 VITKFCSERIAKYAFEYAYL-NY--RKKVT-AVHKANIMKLADGLF-LE-------SCREVATKYPSIKY-NEIIVDNCC 229 (359)
Q Consensus 163 ~~Tr~~~eRiar~AFe~A~~-r~--~~~Vt-~v~KaNvl~~tdglf-~~-------~~~eva~eypdI~~-~~~~vD~~~ 229 (359)
.+|.+.+.+-++.+.+.-++ -| +.|+- +.=..+.=. .|+| +| ..++..++ ++.+ -..--|++.
T Consensus 170 ~it~~~i~~~i~~~~~~l~~~~gi~~PrIaV~gLNPHAGE--~G~~G~EE~~iI~PAI~~~~~~--G~~v~GP~paDt~F 245 (320)
T TIGR00557 170 ALTPELLVEKLRILHADLRRDFGIARPRIAVAGLNPHAGE--GGHLGREEIDIIIPALEALRAE--GIDLIGPLPADTLF 245 (320)
T ss_pred HhCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCCCC--CCCCcHHHHHHHHHHHHHHHHC--CCcccCCCCchhhc
Confidence 57888888888888876663 23 22332 222222221 3555 32 22332222 2332 233346665
Q ss_pred HHHHhCCCCccEEEeCCcchhhHHHhhhhhcCCCCccceeeeCCCcceEeccccCCCCCcccccccccCChhHHHHHHHH
Q 018224 230 MQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGGNVGADTAVFEQGASAGNVGNEKVVEQKKANPVALLLSSAM 309 (359)
Q Consensus 230 ~~Lv~~P~~fdViv~~NlfGDILSDlaa~l~GglGl~psanig~~~a~FEp~~~~~HGsApdiaGk~~ANP~a~Ils~am 309 (359)
.+-.+ ++||++|| || -|.+--=.-.+++--+.|+.-.-.+--+... ||||-||||||+|||.+++.|.-+
T Consensus 246 ~~~~~--~~~D~vva--MY----HDQGliP~K~l~F~~gVNvTlGLPiiRTS~D--HGTAfDIAGkg~A~~~S~~~Ai~~ 315 (320)
T TIGR00557 246 HPAAL--AKYDAVLA--MY----HDQGLIPLKYLGFDEGVNVTLGLPFIRTSPD--HGTAFDIAGKGKADPGSLIAAIKL 315 (320)
T ss_pred ccccc--cCCCEEEE--Cc----ccccchhheecccCcceEEecCCCeeEeCCC--CcchhhhhcCCCCCHHHHHHHHHH
Confidence 55333 67999998 34 3455555667788888888755444444444 999999999999999999888765
Q ss_pred HH
Q 018224 310 ML 311 (359)
Q Consensus 310 mL 311 (359)
..
T Consensus 316 A~ 317 (320)
T TIGR00557 316 AI 317 (320)
T ss_pred HH
Confidence 43
No 40
>PRK05312 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=95.62 E-value=0.017 Score=57.71 Aligned_cols=137 Identities=11% Similarity=0.059 Sum_probs=83.9
Q ss_pred EeecHHHHHHHHHHHHHHHHh-cCC--CcEEE-EEcCCchhhchHHH-HHH-------HHHHHhhCCceee-ceeeHhHH
Q 018224 162 KVITKFCSERIAKYAFEYAYL-NYR--KKVTA-VHKANIMKLADGLF-LES-------CREVATKYPSIKY-NEIIVDNC 228 (359)
Q Consensus 162 ~~~Tr~~~eRiar~AFe~A~~-r~~--~~Vt~-v~KaNvl~~tdglf-~~~-------~~eva~eypdI~~-~~~~vD~~ 228 (359)
+.+|.+.+.+.++.+.+.-++ -|. -|+-+ .=..+.=. .|+| +|. .++..++ ++.+ -..--|++
T Consensus 181 ~~it~e~i~~~i~l~~~~l~~~~gi~~PrIaV~GLNPHAGE--~G~~G~EE~~iI~PAI~~~~~~--Gi~v~GP~paDt~ 256 (336)
T PRK05312 181 AALTPELIVATARITAADLRRRFGIASPRLAVAGLNPHAGE--GGALGREDIDIIAPAIEQLRAE--GIDARGPLPADTM 256 (336)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeeCCCCCC--CCCCcHHHHHHHHHHHHHHHHC--CCCccCCCCchhh
Confidence 467888888888888876663 232 23332 22222211 3566 332 2332232 2322 23335666
Q ss_pred HHHHHhCCCCccEEEeCCcchhhHHHhhhhhcCCCCccceeeeCCCcceEeccccCCCCCcccccccccCChhHHHHHHH
Q 018224 229 CMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGGNVGADTAVFEQGASAGNVGNEKVVEQKKANPVALLLSSA 308 (359)
Q Consensus 229 ~~~Lv~~P~~fdViv~~NlfGDILSDlaa~l~GglGl~psanig~~~a~FEp~~~~~HGsApdiaGk~~ANP~a~Ils~a 308 (359)
..+-.+ ..||++|+ || -|.+---.-.+++--+.|+.-.-.+--+... ||||.||||||+|||.+++.|.-
T Consensus 257 F~~~~~--~~~D~vva--MY----HDQGliP~K~l~F~~gVNvTlGLP~iRTSvD--HGTAfDIAGkg~A~~~S~~~Ai~ 326 (336)
T PRK05312 257 FHAAAR--ATYDAAIC--MY----HDQALIPIKTLDFDGGVNVTLGLPFIRTSPD--HGTAFDIAGKGIARPDSLIAALR 326 (336)
T ss_pred cccccc--cCCCEEEE--cc----cccCChhheecccCcceEEecCCCeeEeCCC--CcchhhhhcCCCCCHHHHHHHHH
Confidence 555333 57999998 34 3455555667777788888755444444444 99999999999999999998877
Q ss_pred HHHh
Q 018224 309 MMLR 312 (359)
Q Consensus 309 mmL~ 312 (359)
+-.+
T Consensus 327 lA~~ 330 (336)
T PRK05312 327 LAAQ 330 (336)
T ss_pred HHHH
Confidence 6544
No 41
>PRK03946 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=95.54 E-value=0.019 Score=56.65 Aligned_cols=135 Identities=11% Similarity=0.082 Sum_probs=81.2
Q ss_pred EeecHHHHHHHHHHHHHHHHhcCCCcEEE-EEcCCchhhchHHH-HH------HHHHHHhhCCceeec--eeeHhHHHHH
Q 018224 162 KVITKFCSERIAKYAFEYAYLNYRKKVTA-VHKANIMKLADGLF-LE------SCREVATKYPSIKYN--EIIVDNCCMQ 231 (359)
Q Consensus 162 ~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~-v~KaNvl~~tdglf-~~------~~~eva~eypdI~~~--~~~vD~~~~~ 231 (359)
+.+|.+.+.+.++...+.-+ . .|+-+ .=..+.= -.|+| +| ..++..+. .++.+. ..--|++..+
T Consensus 157 ~~it~~~i~~~i~~~~~~l~-~--PrIaV~gLNPHAG--E~G~~G~EE~iI~PAi~~~~~~-~g~~~~~GP~paDt~F~~ 230 (307)
T PRK03946 157 QLIKVKKLVKFLLDFYKSTK-F--KKIGVLGLNPHAG--DNGVIGGEEEEIKKAIKKANQF-LGFEIFFGPLVPDSAFTP 230 (307)
T ss_pred HHhCHHHHHHHHHHHHHHhc-C--CCEEEEeeCCCCC--CCCCCCcchHHHHHHHHHHHHh-cCCCcccCCcCchhhccc
Confidence 36778888777776665433 3 23322 2222221 12444 22 23332211 145444 6667777665
Q ss_pred HHhCCCCccEEEeCCcchhhHHHhhhhhcCCCCccceeeeCCCcceEeccccCCCCCcccccccc-cCChhHHHHHHHHH
Q 018224 232 LVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGGNVGADTAVFEQGASAGNVGNEKVVEQK-KANPVALLLSSAMM 310 (359)
Q Consensus 232 Lv~~P~~fdViv~~NlfGDILSDlaa~l~GglGl~psanig~~~a~FEp~~~~~HGsApdiaGk~-~ANP~a~Ils~amm 310 (359)
-.+ +.||++|| ||= |.+--=+-.+++--+.|+--.-.+--+... ||||.|||||| +|||.+|+-|.-+-
T Consensus 231 ~~~--~~~D~vla--MYH----DQGlip~K~l~F~~gVnvTlGLP~iRTSpD--HGTAfDIAGkg~~A~~~S~~~Ai~lA 300 (307)
T PRK03946 231 NKR--KKFNYYVA--MYH----DQGLAPLKALYFDESINVSLNLPILRTSVD--HGTAFDIAYKNAKANTKSYLNAIKYA 300 (307)
T ss_pred ccc--cCCCEEEE--Ccc----ccCchhheeeccCcceEEecCCCEeEecCC--CCchhhhcCCCCcCCHHHHHHHHHHH
Confidence 444 68999998 443 454444567777778888755444444444 99999999999 99999999887664
Q ss_pred Hh
Q 018224 311 LR 312 (359)
Q Consensus 311 L~ 312 (359)
.+
T Consensus 301 ~~ 302 (307)
T PRK03946 301 IN 302 (307)
T ss_pred HH
Confidence 43
No 42
>TIGR00178 monomer_idh isocitrate dehydrogenase, NADP-dependent, monomeric type. The monomeric type of isocitrate dehydrogenase has been found so far in a small number of species, including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. It is NADP-specific.
Probab=95.30 E-value=0.25 Score=52.46 Aligned_cols=176 Identities=18% Similarity=0.195 Sum_probs=115.4
Q ss_pred eeeeCCEEEEEEeecHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHhhCC--ceeeceee-HhH
Q 018224 151 HEVVPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYP--SIKYNEII-VDN 227 (359)
Q Consensus 151 ~~~~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~eyp--dI~~~~~~-vD~ 227 (359)
|.+..|-.+.-+---...++..++.|..+||..|-.-|.-.|+.-. | |.-..+-++..-+++- +++++-|- +++
T Consensus 448 h~Ve~GDIwRmcq~KD~pI~DWVkLAV~Rar~sg~pavFWLD~~Ra--H-Da~lI~kV~~yL~~hdt~gldi~Im~p~~A 524 (741)
T TIGR00178 448 QSVEAGDIWRMCQVKDAPIQDWVKLAVTRARATGTPAVFWLDPARA--H-DAQLIKKVETYLKDHDTEGLDIQILSPVEA 524 (741)
T ss_pred eeccCCcchhhhhccCchHHHHHHHHHHHHHhcCCCeEEEeCCCch--h-HHHHHHHHHHHHHhcCCCCCceEeeCHHHH
Confidence 3433443333333335568899999999999987666666665432 2 4333344444445542 44555554 566
Q ss_pred HHHHHHhCCCCcc-EEEeCCcchhhHHHhhhhh-cCC----CCccceeeeCCCcceEeccccCCCCCccccccc------
Q 018224 228 CCMQLVSKPEQFD-VMVTPNLYGNLVSNTAAGI-AGG----TGVMPGGNVGADTAVFEQGASAGNVGNEKVVEQ------ 295 (359)
Q Consensus 228 ~~~~Lv~~P~~fd-Viv~~NlfGDILSDlaa~l-~Gg----lGl~psanig~~~a~FEp~~~~~HGsApdiaGk------ 295 (359)
+-..|=+=-.+-| +-||.|..=|+|+||.--| .|. |-+.|=-| ..++||+. . .||||...-|
T Consensus 525 ~~~slerir~G~dTISVTGNVLRDYLTDLFPILElGTSAKMLSIVPLm~---GGGLFETG-A--GGSAPKHVqQf~eEnh 598 (741)
T TIGR00178 525 TRFSLARIRRGEDTISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLMA---GGGLFETG-A--GGSAPKHVQQFLEENH 598 (741)
T ss_pred HHHHHHHHHcCCCeEEEechhHHhhhcchhhhhhhccchhhhhhhhccc---CCceecCC-C--CCCccHHHHHHHHcCc
Confidence 6656644444556 6699999999999998655 221 22333322 35899996 4 8999998632
Q ss_pred ccCChhHHHHHHHHHHhhcCCH-------HHHHHHHHHHHHHHHcCc
Q 018224 296 KKANPVALLLSSAMMLRHLQFP-------SFADRLETAVKRVISEEK 335 (359)
Q Consensus 296 ~~ANP~a~Ils~ammL~~lg~~-------~~A~~i~~Av~~~l~~g~ 335 (359)
=.=+-+|-+|+.+--|+||+.. --|+.|.+|..+.|++++
T Consensus 599 LRWDSLGEFlALa~Sle~la~~~~n~ka~vLa~tLd~At~k~L~n~k 645 (741)
T TIGR00178 599 LRWDSLGEFLALAASLEHLGNATGNPKALVLADTLDAATGKLLDNNK 645 (741)
T ss_pred ccccchhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCC
Confidence 2446689999999999998752 338889999999999875
No 43
>COG1995 PdxA Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=93.85 E-value=0.061 Score=53.27 Aligned_cols=65 Identities=14% Similarity=0.165 Sum_probs=46.6
Q ss_pred ccEEEeCCcchhhHHHhhhhhcCCCCccceeeeCCCcceEeccccCCCCCcccccccccCChhHHHHHHHHHH
Q 018224 239 FDVMVTPNLYGNLVSNTAAGIAGGTGVMPGGNVGADTAVFEQGASAGNVGNEKVVEQKKANPVALLLSSAMML 311 (359)
Q Consensus 239 fdViv~~NlfGDILSDlaa~l~GglGl~psanig~~~a~FEp~~~~~HGsApdiaGk~~ANP~a~Ils~ammL 311 (359)
+|.+|| ||= |.+---.--+|+--|.|+.-+-.+--+... ||||.||||||+|||.+++-|..+.-
T Consensus 259 ~Davla--MYH----DQgliplK~l~Fd~~VNvtlGLPfiRTS~D--HGTAfDiAgkGiA~~~S~~~Ai~lA~ 323 (332)
T COG1995 259 YDAVLA--MYH----DQGLIPLKYLGFDRGVNVTLGLPFIRTSVD--HGTAFDIAGKGIADPGSLIAAIKLAA 323 (332)
T ss_pred CCEEEE--eec----cccchhhhhhccccceEEecCCCeeeecCC--ccchhhhhcCCcCCchHHHHHHHHHH
Confidence 588877 443 455555566777788888754334344344 99999999999999999998876543
No 44
>COG2838 Icd Monomeric isocitrate dehydrogenase [Energy production and conversion]
Probab=92.06 E-value=2.3 Score=44.60 Aligned_cols=166 Identities=18% Similarity=0.179 Sum_probs=105.9
Q ss_pred EEeecHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHhhC--Cceeecee-eHhHHHHHHHhCCC
Q 018224 161 LKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKY--PSIKYNEI-IVDNCCMQLVSKPE 237 (359)
Q Consensus 161 ~~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~ey--pdI~~~~~-~vD~~~~~Lv~~P~ 237 (359)
.+......+...++.|.+.||..|---|.-.|..- ..|.-....++..-+++ .+..+.-+ .+.++-..|.+=-.
T Consensus 460 ~cq~kdapi~dWVkLaV~RarlS~~pavFWLDp~R---ahd~~li~kV~~yLkdhdt~GldI~Ilsp~ea~~~sl~rl~~ 536 (744)
T COG2838 460 MCQVKDAPIRDWVKLAVTRARLSGMPAVFWLDPYR---AHDKELIKKVEAYLKDHDTNGLDIQILSPVEAMRYSLERLRR 536 (744)
T ss_pred HHhcccchHHHHHHHHHHHHhhcCCceEEEeCcCc---cchHHHHHHHHHHhhhcCCCCcceEEecHHHHHHHHHHHHHc
Confidence 34455667888999999999987644454444332 22433333444333332 22333333 25666666654445
Q ss_pred Ccc-EEEeCCcchhhHHHhhhhhc-CC----CCccceeeeCCCcceEeccccCCCCCccccccc----c--cCChhHHHH
Q 018224 238 QFD-VMVTPNLYGNLVSNTAAGIA-GG----TGVMPGGNVGADTAVFEQGASAGNVGNEKVVEQ----K--KANPVALLL 305 (359)
Q Consensus 238 ~fd-Viv~~NlfGDILSDlaa~l~-Gg----lGl~psanig~~~a~FEp~~~~~HGsApdiaGk----~--~ANP~a~Il 305 (359)
+-| +-||.|..-|+|+||.--|- |. +.+.|=- ...+|||+. . .||||...-| | .=+-+|-+|
T Consensus 537 G~DtIsvTGNvLRDYlTDLFPIlELGTSAKMLSiVPlm---aGGgmfETG-A--GGSAPKhVqQ~~eENhLRWDSLGEFL 610 (744)
T COG2838 537 GEDTISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLM---AGGGMFETG-A--GGSAPKHVQQLVEENHLRWDSLGEFL 610 (744)
T ss_pred CCceeEecchHHHHHHhhhhhHhhcccccchheeeeec---cCCceeecC-C--CCCCcHHHHHHHHhcccchhhHHHHH
Confidence 556 56899999999999976552 21 2222222 235899996 4 8999987532 2 345689999
Q ss_pred HHHHHHhhcCCH-------HHHHHHHHHHHHHHHcCc
Q 018224 306 SSAMMLRHLQFP-------SFADRLETAVKRVISEEK 335 (359)
Q Consensus 306 s~ammL~~lg~~-------~~A~~i~~Av~~~l~~g~ 335 (359)
+.+.-|+|+|.. --|+++..|..+.|.+.+
T Consensus 611 ALa~sle~~~~k~gn~kAkvLa~~LD~AtgklLdn~K 647 (744)
T COG2838 611 ALAASLEHLGNKTGNAKAKVLAKALDAATGKLLDNNK 647 (744)
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999998853 347788888888887754
No 45
>PTZ00435 isocitrate dehydrogenase; Provisional
Probab=63.66 E-value=9.7 Score=39.29 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=20.6
Q ss_pred cccEEEEecCCcceEeccceeeeC
Q 018224 132 NVDIVVIRENTEGEYSGLEHEVVP 155 (359)
Q Consensus 132 ~iDivivREnteG~Y~g~~~~~~~ 155 (359)
+.|++++||||||.|.+.+.....
T Consensus 127 ~~~i~i~Ren~e~~y~~id~vi~r 150 (413)
T PTZ00435 127 KKPIVIGRHAFGDQYKATDFVVDG 150 (413)
T ss_pred CCCeeeeccccCCCcCceEEEEec
Confidence 478999999999999999876543
No 46
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=58.48 E-value=30 Score=27.43 Aligned_cols=62 Identities=23% Similarity=0.199 Sum_probs=39.2
Q ss_pred HHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHH-hh--CCceeeceeeHhHHHHHHHhCCCCccEEEeCC
Q 018224 174 KYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVA-TK--YPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPN 246 (359)
Q Consensus 174 r~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva-~e--ypdI~~~~~~vD~~~~~Lv~~P~~fdViv~~N 246 (359)
++++.+|+++...+|+.++.+ .-+.+.+++-+ +. -+.|.+.+. |. ......+++||+|++.+
T Consensus 14 ~~~~~l~~~~~~~~v~gvD~s-------~~~~~~a~~~~~~~~~~~~i~~~~~--d~--~~~~~~~~~~D~v~~~~ 78 (112)
T PF12847_consen 14 RLSIALARLFPGARVVGVDIS-------PEMLEIARERAAEEGLSDRITFVQG--DA--EFDPDFLEPFDLVICSG 78 (112)
T ss_dssp HHHHHHHHHHTTSEEEEEESS-------HHHHHHHHHHHHHTTTTTTEEEEES--CC--HGGTTTSSCEEEEEECS
T ss_pred HHHHHHHhcCCCCEEEEEeCC-------HHHHHHHHHHHHhcCCCCCeEEEEC--cc--ccCcccCCCCCEEEECC
Confidence 356777775456789999853 23344444444 22 245555443 33 55667888999999999
No 47
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=57.15 E-value=39 Score=30.65 Aligned_cols=66 Identities=20% Similarity=0.167 Sum_probs=39.3
Q ss_pred HHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHhhCCceeeceeeHhHHHHHHHhCCCCccEEEeC
Q 018224 175 YAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTP 245 (359)
Q Consensus 175 ~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~eypdI~~~~~~vD~~~~~Lv~~P~~fdViv~~ 245 (359)
.++| |..||-++|++|+|..- +....++-.+.+..+- .+.+-..-+-....++......||+|.+.
T Consensus 56 lGlE-ALSRGA~~v~fVE~~~~---a~~~i~~N~~~l~~~~-~~~v~~~d~~~~l~~~~~~~~~fDiIflD 121 (183)
T PF03602_consen 56 LGLE-ALSRGAKSVVFVEKNRK---AIKIIKKNLEKLGLED-KIRVIKGDAFKFLLKLAKKGEKFDIIFLD 121 (183)
T ss_dssp HHHH-HHHTT-SEEEEEES-HH---HHHHHHHHHHHHT-GG-GEEEEESSHHHHHHHHHHCTS-EEEEEE-
T ss_pred cHHH-HHhcCCCeEEEEECCHH---HHHHHHHHHHHhCCCc-ceeeeccCHHHHHHhhcccCCCceEEEEC
Confidence 4677 67888899999998864 3345566666553221 24444443444556677788999988764
No 48
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=54.80 E-value=1e+02 Score=24.06 Aligned_cols=79 Identities=13% Similarity=0.108 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEcCCchh--------hchHHHHHHHHHHHhh--CCceeeceeeHhH----HHHH
Q 018224 166 KFCSERIAKYAFEYAYLNYRKKVTAVHKANIMK--------LADGLFLESCREVATK--YPSIKYNEIIVDN----CCMQ 231 (359)
Q Consensus 166 r~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvl~--------~tdglf~~~~~eva~e--ypdI~~~~~~vD~----~~~~ 231 (359)
...+.+++++|.++|.++ ..+++++|=..-.. ....-.++..++..+. ++++.+...+++. ...+
T Consensus 9 ~~~~~~~l~~a~~~a~~~-~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 87 (130)
T cd00293 9 SEESERALRWAARLARRL-GAELVLLHVVDPPPSSAAELAELLEEEARALLEALREALAEAGVKVETVVLEGDPAEAILE 87 (130)
T ss_pred CHHHHHHHHHHHHHHHhc-CCEEEEEEEecCCCCcchhHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEecCCCHHHHHH
Confidence 456888999999999987 47788776321110 0112233444444332 4677665554322 3333
Q ss_pred HHhCCCCccEEEeCC
Q 018224 232 LVSKPEQFDVMVTPN 246 (359)
Q Consensus 232 Lv~~P~~fdViv~~N 246 (359)
.+. -.++|++|...
T Consensus 88 ~~~-~~~~dlvvig~ 101 (130)
T cd00293 88 AAE-ELGADLIVMGS 101 (130)
T ss_pred HHH-HcCCCEEEEcC
Confidence 343 46788777654
No 49
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=52.46 E-value=1e+02 Score=28.21 Aligned_cols=78 Identities=13% Similarity=0.100 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHhhCCceeeceee-----Hh---HHHHHHHhCCC
Q 018224 166 KFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEII-----VD---NCCMQLVSKPE 237 (359)
Q Consensus 166 r~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~eypdI~~~~~~-----vD---~~~~~Lv~~P~ 237 (359)
....+..+++..+.. +|+++|-++.=.+-. .+.....+-+.+..+++|++++.... .+ ..+.+++++..
T Consensus 105 ~~~g~~~~~~l~~~~--~g~~~i~~l~~~~~~-~~~~~R~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 181 (270)
T cd06308 105 YEIGRQAGEYIANLL--PGKGNILEIWGLEGS-SPAIERHDGFKEALSKYPKIKIVAQQDGDWLKEKAEEKMEELLQANP 181 (270)
T ss_pred HHHHHHHHHHHHHHc--CCCceEEEEECCCCC-chHHHHHHHHHHHHHHCCCCEEEEecCCCccHHHHHHHHHHHHHhCC
Confidence 444555555554433 356788777411111 12233345566666778776533211 12 34556665545
Q ss_pred CccEEEeCC
Q 018224 238 QFDVMVTPN 246 (359)
Q Consensus 238 ~fdViv~~N 246 (359)
++|.|+|.|
T Consensus 182 ~~~aI~~~~ 190 (270)
T cd06308 182 DIDLVYAHN 190 (270)
T ss_pred CCcEEEeCC
Confidence 789888865
No 50
>TIGR00651 pta phosphate acetyltransferase. Model contains a gene from E.coli coding for ethanolamine utilization protein (euti) and also contains similarity to malate oxidoreductases
Probab=49.74 E-value=1e+02 Score=30.43 Aligned_cols=98 Identities=18% Similarity=0.111 Sum_probs=59.1
Q ss_pred cHHHHHHHHHHHHHHHHhcC--CCcEEEEE---cCCchhhchHHHHHHHHHHHhhCCceeecee-eHhHHHHHH------
Q 018224 165 TKFCSERIAKYAFEYAYLNY--RKKVTAVH---KANIMKLADGLFLESCREVATKYPSIKYNEI-IVDNCCMQL------ 232 (359)
Q Consensus 165 Tr~~~eRiar~AFe~A~~r~--~~~Vt~v~---KaNvl~~tdglf~~~~~eva~eypdI~~~~~-~vD~~~~~L------ 232 (359)
|-+..-.|+..|-++|+.-| .-||-+.. |.|.--.+...-++.++-+.+++|++.++=. .+|++.-.=
T Consensus 157 ~~e~l~~ia~~a~~~a~~lg~~~PkVAlLs~S~~gs~~~~~~~kv~eA~~l~~~~~~~~~vdG~l~~D~Al~~~~a~~K~ 236 (303)
T TIGR00651 157 NAEQLAEIAIQSAKSAKSFGEIEPKVALLSYSTKGSGSGEDVEKVREATRIAKEKRPDLTIDGELQFDAAFVEKVAEKKA 236 (303)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCCCccHHHHHHHHHHhccCCCeEEEecCchhhhCCHHHHHhhC
Confidence 44555667888899998765 34555543 3332211223335555544557898877643 457664331
Q ss_pred HhCC--CCccEEEeCCcc-hhhHHHhhhhhcCC
Q 018224 233 VSKP--EQFDVMVTPNLY-GNLVSNTAAGIAGG 262 (359)
Q Consensus 233 v~~P--~~fdViv~~Nlf-GDILSDlaa~l~Gg 262 (359)
..+| +.-||+|+||++ |||+--+.-.+.|+
T Consensus 237 ~~s~v~G~AdvLV~Pnl~aGNi~~K~~~~~~~~ 269 (303)
T TIGR00651 237 PNSPVAGSANVFVFPDLDAGNIGYKIVQRLGDA 269 (303)
T ss_pred CCCccCCcCCEEEeCCchHHHHHHHHHHHhcCC
Confidence 1222 477899999997 89987777666543
No 51
>PRK12862 malic enzyme; Reviewed
Probab=48.21 E-value=1.4e+02 Score=33.31 Aligned_cols=100 Identities=18% Similarity=0.092 Sum_probs=66.9
Q ss_pred EeecHHHHHHHHHHHHHHHHhcC-CCcEEEE---EcCCchhhchHHHHHHHHHHHhhCCceeecee-eHhHHHHHHHhC-
Q 018224 162 KVITKFCSERIAKYAFEYAYLNY-RKKVTAV---HKANIMKLADGLFLESCREVATKYPSIKYNEI-IVDNCCMQLVSK- 235 (359)
Q Consensus 162 ~~~Tr~~~eRiar~AFe~A~~r~-~~~Vt~v---~KaNvl~~tdglf~~~~~eva~eypdI~~~~~-~vD~~~~~Lv~~- 235 (359)
.-.|.+...++++.+.++++.-| .-||-+. ++.|.-......-++.++...+++|++.++-- -.|++...=+..
T Consensus 607 ~~pt~e~La~ia~~aa~~ar~~GIePRVAvLshs~~Gs~~~ee~~~i~pAiellr~~~~g~~VdGPl~aDtAf~~~~~~~ 686 (763)
T PRK12862 607 EDPTAEELAEITILAAEEVRRFGIEPKVALLSHSNFGSSDSPSARKMREALEILRERAPDLEVDGEMHGDAALDEELRDR 686 (763)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcccccCCCCCchHHHHHHHHHHHHhcCCCcEEEcCCCHHHHcCHHHHhh
Confidence 35678888999999999998755 3357666 33332222333445666666677898887644 478876653332
Q ss_pred --C-----CCccEEEeCCcc-hhhHHHhhhhhcC
Q 018224 236 --P-----EQFDVMVTPNLY-GNLVSNTAAGIAG 261 (359)
Q Consensus 236 --P-----~~fdViv~~Nlf-GDILSDlaa~l~G 261 (359)
| +++||+|++|+. |+|.--+..-+.|
T Consensus 687 K~~~s~vaG~aDvLV~P~~DqGNI~~Kll~f~~g 720 (763)
T PRK12862 687 IFPDSRLEGEANLLVFPNLDAANIAYNLLKTAAG 720 (763)
T ss_pred cCCCCccCCCCCEEEecChhHhhHHHHHHHHhcc
Confidence 2 359999999994 8888777766554
No 52
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=47.24 E-value=88 Score=29.29 Aligned_cols=74 Identities=9% Similarity=0.046 Sum_probs=42.2
Q ss_pred cccccCCCCCCCCcceEEEEcCC---CCcHHHHHHHHHHHHHcCCCeeEEEEEecCcccCCcHHHHHHH--HhcCceeec
Q 018224 16 RSVTYMPRPGDGSPRAVTLIPGD---GIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSI--RKNKVCLKG 90 (359)
Q Consensus 16 ~~~~~~~~~~~~~~~~I~vi~GD---GIGpEV~~~a~~vl~~~~~~ie~~~~~~g~~~~~lp~et~~~~--~~~da~l~G 90 (359)
.|+...+..+.++..+|+++--+ ---.++.....+.++..|..+.+...+... ....+.++.+ ++.|+++.-
T Consensus 22 ~pn~~a~~l~~~~~~~ig~v~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~---~~~~~~i~~l~~~~vDgiIi~ 98 (309)
T PRK11041 22 SPQSLGRNLKRNESRTILVIVPDICDPFFSEIIRGIEVTAAEHGYLVLIGDCAHQN---QQEKTFVNLIITKQIDGMLLL 98 (309)
T ss_pred CcCHHHHHhhcCCCcEEEEEeCCCcCccHHHHHHHHHHHHHHCCCEEEEEeCCCCh---HHHHHHHHHHHHcCCCEEEEe
Confidence 46655555566677899988543 356677777777777777666543221111 1122333332 357888775
Q ss_pred cc
Q 018224 91 GL 92 (359)
Q Consensus 91 ~~ 92 (359)
+.
T Consensus 99 ~~ 100 (309)
T PRK11041 99 GS 100 (309)
T ss_pred cC
Confidence 54
No 53
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=47.23 E-value=84 Score=30.00 Aligned_cols=61 Identities=8% Similarity=0.113 Sum_probs=42.6
Q ss_pred cceEEEEcCCCCcH-HHHHHHHHHHHHcCCC-eeEEEEEecCcccCCcHHHHHHHHhcCceeecc
Q 018224 29 PRAVTLIPGDGIGP-LVTNAVEQVMEAMHAP-IYFEKYEVHGDMKRVPQQVLDSIRKNKVCLKGG 91 (359)
Q Consensus 29 ~~~I~vi~GDGIGp-EV~~~a~~vl~~~~~~-ie~~~~~~g~~~~~lp~et~~~~~~~da~l~G~ 91 (359)
..+|++||-.+-.| +..+...+.++++|+. ++ ..++.....+-.++..+.++++|+++++-
T Consensus 28 ~~rI~~iptAS~~~~~~~~~~~~~~~~lG~~~v~--~l~i~~r~~a~~~~~~~~l~~ad~I~~~G 90 (250)
T TIGR02069 28 DAIIVIITSASEEPREVGERYITIFSRLGVKEVK--ILDVREREDASDENAIALLSNATGIFFTG 90 (250)
T ss_pred CceEEEEeCCCCChHHHHHHHHHHHHHcCCceeE--EEecCChHHccCHHHHHHHhhCCEEEEeC
Confidence 46999999655445 6788888899998874 44 34443211145677788999999999843
No 54
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=46.56 E-value=17 Score=36.40 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=17.9
Q ss_pred CcceEEEEcCC--CCcHHHHHHHH
Q 018224 28 SPRAVTLIPGD--GIGPLVTNAVE 49 (359)
Q Consensus 28 ~~~~I~vi~GD--GIGpEV~~~a~ 49 (359)
++.+|++-.|| ||||||+-.+.
T Consensus 2 ~~p~iaIT~GDpaGIGpEii~ka~ 25 (332)
T PRK03743 2 KKPIIAIPIGDPAGIGPEIVVKTL 25 (332)
T ss_pred CCCeEEEeCCCCcchHHHHHHHHH
Confidence 34689999998 89999987663
No 55
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=45.24 E-value=78 Score=25.65 Aligned_cols=57 Identities=12% Similarity=0.195 Sum_probs=39.2
Q ss_pred CcceEEEEcCCCCcHHHH-HHHHHHHHHcCCCeeEEEEEecCcccCCcHHHHHHHHhcCceeeccc
Q 018224 28 SPRAVTLIPGDGIGPLVT-NAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIRKNKVCLKGGL 92 (359)
Q Consensus 28 ~~~~I~vi~GDGIGpEV~-~~a~~vl~~~~~~ie~~~~~~g~~~~~lp~et~~~~~~~da~l~G~~ 92 (359)
+.++|.++=|.|++-.++ ....+.++.-|++++++...++. ++ +...++|++|.+|.
T Consensus 2 ~~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~~~~----~~----~~~~~~Dvill~pq 59 (95)
T TIGR00853 2 NETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGSYGA----AG----EKLDDADVVLLAPQ 59 (95)
T ss_pred CccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEecHHH----HH----hhcCCCCEEEECch
Confidence 457899999999998754 34445555568887776666542 12 23457899999984
No 56
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=44.89 E-value=1.8e+02 Score=26.36 Aligned_cols=79 Identities=11% Similarity=0.080 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHhhCCceeeceee----HhH---HHHHHHhCCCC
Q 018224 166 KFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEII----VDN---CCMQLVSKPEQ 238 (359)
Q Consensus 166 r~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~eypdI~~~~~~----vD~---~~~~Lv~~P~~ 238 (359)
..+....+++..+.. .|++++.++.-.. .. +.....+-+++..+++|++++.... .+. .+..+++...+
T Consensus 104 ~~~g~~~~~~l~~~~--~g~~~i~~i~~~~-~~-~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 179 (267)
T cd06322 104 YAGGVLAGELAAKVL--NGKGQVAIIDYPT-VQ-SVVDRVRGFKEALADYPNIKIVAVQPGITRAEALTAAQNILQANPD 179 (267)
T ss_pred HHHHHHHHHHHHHHh--CCCceEEEEecCC-Cc-cHHHHHHHHHHHHHhCCCcEEEEecCCCChHHHHHHHHHHHHhCCC
Confidence 344444444444432 2566788776322 22 2234445666666677776643221 121 24456655457
Q ss_pred ccEEEeCCcc
Q 018224 239 FDVMVTPNLY 248 (359)
Q Consensus 239 fdViv~~Nlf 248 (359)
+++|+|.|-.
T Consensus 180 ~~ai~~~~d~ 189 (267)
T cd06322 180 LDGIFAFGDD 189 (267)
T ss_pred CCEEEEcCCc
Confidence 8999998743
No 57
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=43.77 E-value=1.6e+02 Score=32.93 Aligned_cols=100 Identities=18% Similarity=0.102 Sum_probs=65.7
Q ss_pred cHHHHHHHHHHHHHHHHhcCC-CcEEEE---EcCCchhhchHHHHHHHHHHHhhCCceeecee-eHhHHHHHHH------
Q 018224 165 TKFCSERIAKYAFEYAYLNYR-KKVTAV---HKANIMKLADGLFLESCREVATKYPSIKYNEI-IVDNCCMQLV------ 233 (359)
Q Consensus 165 Tr~~~eRiar~AFe~A~~r~~-~~Vt~v---~KaNvl~~tdglf~~~~~eva~eypdI~~~~~-~vD~~~~~Lv------ 233 (359)
|-+..-.|+..|-++|+.-|- -||-+. ++.|.-..+...-++..+-+.+++|++.++=. .+|++.-.-+
T Consensus 602 taeqLa~IA~~aa~~ar~lGiePRVALLS~Sn~Gse~~k~~~~vreA~~llk~~~~~l~~dGemq~D~Al~~~va~~K~p 681 (752)
T PRK07232 602 TAEELAEIALMAAEEVRRFGIEPRVALLSHSNFGSSDSPSARKMREAVELLRERAPDLEVDGEMHGDAALNEEIRKDLYP 681 (752)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCeEEEEeccccCCCCCCcHHHHHHHHHHHHhhCCCcEEEEechHHHhCCHHHHHhhCC
Confidence 455666778888899987653 467777 66664332334445566655666898877654 3666643222
Q ss_pred hCC--CCccEEEeCCc-chhhHHHhhhhhcCCCC
Q 018224 234 SKP--EQFDVMVTPNL-YGNLVSNTAAGIAGGTG 264 (359)
Q Consensus 234 ~~P--~~fdViv~~Nl-fGDILSDlaa~l~GglG 264 (359)
.+| ++-||+|.||+ -|||+--+.--+.|+-.
T Consensus 682 ~s~vaG~ANVLIfPdLeaGNI~yKllq~l~g~~a 715 (752)
T PRK07232 682 FSRLKGPANVLVMPNLEAANISYNLLKELGGGVT 715 (752)
T ss_pred CCccCCcCCEEEeCCchhhHHHHHHHHHhcCCeE
Confidence 222 35689999999 59999998888766543
No 58
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=43.16 E-value=1.8e+02 Score=26.63 Aligned_cols=61 Identities=16% Similarity=0.132 Sum_probs=32.9
Q ss_pred CCCcEEEEE-cCCchhhchHHHHHHHHHHHhhCCceeeceee-----H---hHHHHHHHhCCCCccEEEeCC
Q 018224 184 YRKKVTAVH-KANIMKLADGLFLESCREVATKYPSIKYNEII-----V---DNCCMQLVSKPEQFDVMVTPN 246 (359)
Q Consensus 184 ~~~~Vt~v~-KaNvl~~tdglf~~~~~eva~eypdI~~~~~~-----v---D~~~~~Lv~~P~~fdViv~~N 246 (359)
|++++.++. ..+.. +.....+-+.+..+++|++++.... . -..+.++++++.++|.|+|.|
T Consensus 121 g~~~i~~l~~~~~~~--~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~ 190 (275)
T cd06320 121 EGGKVAIIEGKAGAF--AAEQRTEGFTEAIKKASGIEVVASQPADWDREKAYDVATTILQRNPDLKAIYCNN 190 (275)
T ss_pred CCceEEEEeCCCCCc--cHHHHHHHHHHHHhhCCCcEEEEecCCCccHHHHHHHHHHHHHhCCCccEEEECC
Confidence 566777663 22322 1223334566665666666532211 1 124456776666789999886
No 59
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=41.56 E-value=1.6e+02 Score=26.51 Aligned_cols=80 Identities=16% Similarity=0.087 Sum_probs=42.1
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHhhCCceeece-----eeHh---HHHHHHHhCC
Q 018224 165 TKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNE-----IIVD---NCCMQLVSKP 236 (359)
Q Consensus 165 Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~eypdI~~~~-----~~vD---~~~~~Lv~~P 236 (359)
.+......+++..+... |++++.++.-..-.. +...+.+-+.+..++|+++++.. ...+ ..+.++.+++
T Consensus 103 ~~~~~~~~~~~l~~~~~--g~~~i~~l~~~~~~~-~~~~r~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 179 (268)
T cd06323 103 NVAGGKMAAEYLVKLLG--GKGKVVELQGIPGAS-AARERGKGFHEVVDKYPGLKVVASQPADFDRAKGLNVMENILQAH 179 (268)
T ss_pred cHHHHHHHHHHHHHHhC--CCceEEEEeCCCCCc-cHHHHHHHHHHHHHhCCCcEEEecccCCCCHHHHHHHHHHHHHHC
Confidence 34455556666554431 456777764221111 23344455666656666655321 1111 2355666666
Q ss_pred CCccEEEeCCc
Q 018224 237 EQFDVMVTPNL 247 (359)
Q Consensus 237 ~~fdViv~~Nl 247 (359)
..+|.|+|.|-
T Consensus 180 ~~~~ai~~~~d 190 (268)
T cd06323 180 PDIKGVFAQND 190 (268)
T ss_pred CCcCEEEEcCC
Confidence 67898888763
No 60
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=41.18 E-value=1.6e+02 Score=23.56 Aligned_cols=28 Identities=7% Similarity=0.064 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEcCC
Q 018224 167 FCSERIAKYAFEYAYLNYRKKVTAVHKAN 195 (359)
Q Consensus 167 ~~~eRiar~AFe~A~~r~~~~Vt~v~KaN 195 (359)
+.+++++++|+.+|++. ..+|+++|=.+
T Consensus 10 ~~~~~~l~~a~~la~~~-~~~v~ll~v~~ 37 (132)
T cd01988 10 NTARDLLELAAALARAQ-NGEIIPLNVIE 37 (132)
T ss_pred hhHHHHHHHHHHHhhcC-CCeEEEEEEEe
Confidence 56889999999999886 46777776433
No 61
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=39.88 E-value=2.7e+02 Score=25.41 Aligned_cols=65 Identities=12% Similarity=0.082 Sum_probs=34.9
Q ss_pred HHHHHHHhcCCCcEEEEEcCCchhhchHHHHH---------------HHHHHHhhCCceeecee--eHhHH-HHHHHhCC
Q 018224 175 YAFEYAYLNYRKKVTAVHKANIMKLADGLFLE---------------SCREVATKYPSIKYNEI--IVDNC-CMQLVSKP 236 (359)
Q Consensus 175 ~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~---------------~~~eva~eypdI~~~~~--~vD~~-~~~Lv~~P 236 (359)
.|-.+|+. |-++++++|...+-. + -|-|+ ..+++.+-+|+++++.. .++.. ...++
T Consensus 36 ia~~La~~-Gv~~i~lvD~d~ve~-s-NL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~i~~~~~~~~~--- 109 (202)
T TIGR02356 36 AALYLAGA-GVGTIVIVDDDHVDL-S-NLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKERVTAENLELLI--- 109 (202)
T ss_pred HHHHHHHc-CCCeEEEecCCEEcc-c-chhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehhcCCHHHHHHHH---
Confidence 34445544 678999999774421 1 12222 23444556888776644 34332 12233
Q ss_pred CCccEEEeC
Q 018224 237 EQFDVMVTP 245 (359)
Q Consensus 237 ~~fdViv~~ 245 (359)
.+||+||..
T Consensus 110 ~~~D~Vi~~ 118 (202)
T TIGR02356 110 NNVDLVLDC 118 (202)
T ss_pred hCCCEEEEC
Confidence 468977755
No 62
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=39.85 E-value=1.7e+02 Score=29.15 Aligned_cols=76 Identities=16% Similarity=0.224 Sum_probs=40.2
Q ss_pred HHHHHHHhcCCCcEEEEEcC-----CchhhchHHHHH------------HHHHHHhhCCceeeceeeHhH---HHHHHHh
Q 018224 175 YAFEYAYLNYRKKVTAVHKA-----NIMKLADGLFLE------------SCREVATKYPSIKYNEIIVDN---CCMQLVS 234 (359)
Q Consensus 175 ~AFe~A~~r~~~~Vt~v~Ka-----Nvl~~tdglf~~------------~~~eva~eypdI~~~~~~vD~---~~~~Lv~ 234 (359)
.|-.+|+. |-++++++|.- |+-+. -+|.+ ..+++.+-+|+++++....|. -...++
T Consensus 39 va~~La~a-Gvg~i~lvD~D~ve~sNL~RQ--~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~~~~~~~~~~~~~~- 114 (338)
T PRK12475 39 NAEALVRA-GIGKLTIADRDYVEWSNLQRQ--QLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPVVTDVTVEELEELV- 114 (338)
T ss_pred HHHHHHHc-CCCEEEEEcCCcccccccCcc--ccccHHHccCCccHHHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHh-
Confidence 44455554 67789999875 43331 12211 124445558999887765432 223343
Q ss_pred CCCCccEEEeC--Ccchhh-HHHhh
Q 018224 235 KPEQFDVMVTP--NLYGNL-VSNTA 256 (359)
Q Consensus 235 ~P~~fdViv~~--NlfGDI-LSDla 256 (359)
.+||+||.. |.--.+ ++|++
T Consensus 115 --~~~DlVid~~D~~~~r~~in~~~ 137 (338)
T PRK12475 115 --KEVDLIIDATDNFDTRLLINDLS 137 (338)
T ss_pred --cCCCEEEEcCCCHHHHHHHHHHH
Confidence 568966643 433222 45555
No 63
>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent, eukaryotic type. This model does not discriminate cytosolic, mitochondrial, and chloroplast proteins. However, the model starts very near the amino end of the cytosolic form; the finding of additional amino-terminal sequence may indicate a transit peptide.
Probab=39.77 E-value=16 Score=37.59 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=19.9
Q ss_pred cccEEEEecCCcceEeccceeee
Q 018224 132 NVDIVVIRENTEGEYSGLEHEVV 154 (359)
Q Consensus 132 ~iDivivREnteG~Y~g~~~~~~ 154 (359)
..+++|+||||||.|.+.+....
T Consensus 124 ~~~i~i~R~~~~~~y~~iD~viv 146 (409)
T TIGR00127 124 EKPIIIGRHAFGDQYRATDFVVP 146 (409)
T ss_pred CCCeeeeccccCCCcCceEEEEe
Confidence 38899999999999999887653
No 64
>COG1995 PdxA Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=39.27 E-value=35 Score=34.22 Aligned_cols=17 Identities=35% Similarity=0.745 Sum_probs=14.8
Q ss_pred CcceEEEEcCC--CCcHHH
Q 018224 28 SPRAVTLIPGD--GIGPLV 44 (359)
Q Consensus 28 ~~~~I~vi~GD--GIGpEV 44 (359)
.+.+|++-.|| ||||||
T Consensus 2 ~~~~iAit~GDPaGIGPEi 20 (332)
T COG1995 2 TKPRIAITMGDPAGIGPEL 20 (332)
T ss_pred CCCceEecCCCcccCCHHH
Confidence 35689999998 999999
No 65
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=39.00 E-value=2e+02 Score=25.98 Aligned_cols=52 Identities=6% Similarity=0.007 Sum_probs=28.1
Q ss_pred CCcHHHHHHHHHHHHHcCCCeeEEEEEecCcccCCcHHHHHHHH--hcCceeeccc
Q 018224 39 GIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIR--KNKVCLKGGL 92 (359)
Q Consensus 39 GIGpEV~~~a~~vl~~~~~~ie~~~~~~g~~~~~lp~et~~~~~--~~da~l~G~~ 92 (359)
--..++...+.+.++..|..+.+...+-+. ...-.+.++.+. +.|+++.-|.
T Consensus 12 ~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~l~~~~vdgiii~~~ 65 (270)
T cd01545 12 GYVSEIQLGALDACRDTGYQLVIEPCDSGS--PDLAERVRALLQRSRVDGVILTPP 65 (270)
T ss_pred ccHHHHHHHHHHHHHhCCCeEEEEeCCCCc--hHHHHHHHHHHHHCCCCEEEEeCC
Confidence 345677778888888777666554332211 112233444442 4677766543
No 66
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=38.95 E-value=1.7e+02 Score=26.53 Aligned_cols=22 Identities=14% Similarity=0.051 Sum_probs=14.8
Q ss_pred CcHHHHHHHHHHHHHcCCCeeE
Q 018224 40 IGPLVTNAVEQVMEAMHAPIYF 61 (359)
Q Consensus 40 IGpEV~~~a~~vl~~~~~~ie~ 61 (359)
--.+++..+.+.++..|..+.+
T Consensus 13 ~~~~~~~g~~~~a~~~g~~~~~ 34 (268)
T cd06270 13 FFGPLLSGVESVARKAGKHLII 34 (268)
T ss_pred chHHHHHHHHHHHHHCCCEEEE
Confidence 3356777777777777766665
No 67
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed
Probab=38.35 E-value=29 Score=34.83 Aligned_cols=21 Identities=33% Similarity=0.711 Sum_probs=17.4
Q ss_pred cceEEEEcCC--CCcHHHHHHHH
Q 018224 29 PRAVTLIPGD--GIGPLVTNAVE 49 (359)
Q Consensus 29 ~~~I~vi~GD--GIGpEV~~~a~ 49 (359)
+.+|++--|| ||||||+-.+.
T Consensus 4 ~p~iaIT~GDpaGIGpEIi~ka~ 26 (332)
T PRK00232 4 KPRIAITPGDPAGIGPELVAKLL 26 (332)
T ss_pred CCcEEEeCCCCcccHHHHHHHHH
Confidence 4589999998 89999987663
No 68
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=38.34 E-value=2.1e+02 Score=25.81 Aligned_cols=74 Identities=12% Similarity=-0.032 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHhhCC---ce-eeceee-----HhHHHHHHHhCCCCccEE
Q 018224 172 IAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYP---SI-KYNEII-----VDNCCMQLVSKPEQFDVM 242 (359)
Q Consensus 172 iar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~eyp---dI-~~~~~~-----vD~~~~~Lv~~P~~fdVi 242 (359)
..+.|.++-.++|.++|.++.-.... .+.....+-|++..+++. .. .+.... .-.+..++++...++|+|
T Consensus 109 ~g~~~~~~l~~~g~~~i~~i~~~~~~-~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai 187 (270)
T cd06294 109 AGYDATEYLIKLGHKKIAFVGGDLDL-EVTQDRLQGYKQALEDHGIPDRNEVIISLDFSEEGGYKALKKLLEQHPRPTAI 187 (270)
T ss_pred HHHHHHHHHHHcCCccEEEecCCccc-HHHHHHHHHHHHHHHHcCCCCCcceEEecCCchHHHHHHHHHHHhCCCCCCEE
Confidence 33445555555577888888522111 122334455666655542 11 111111 113444666665689999
Q ss_pred EeCC
Q 018224 243 VTPN 246 (359)
Q Consensus 243 v~~N 246 (359)
+|.|
T Consensus 188 ~~~~ 191 (270)
T cd06294 188 VATD 191 (270)
T ss_pred EECC
Confidence 9976
No 69
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=38.31 E-value=31 Score=34.58 Aligned_cols=21 Identities=29% Similarity=0.642 Sum_probs=17.7
Q ss_pred cceEEEEcCC--CCcHHHHHHHH
Q 018224 29 PRAVTLIPGD--GIGPLVTNAVE 49 (359)
Q Consensus 29 ~~~I~vi~GD--GIGpEV~~~a~ 49 (359)
+.+|++-.|| ||||||+-.++
T Consensus 5 ~p~iaIT~GDpaGIGpEii~kal 27 (329)
T PRK01909 5 PLQIAITTGEPAGVGPELTVRAL 27 (329)
T ss_pred CCeEEEeCCCCcchHHHHHHHHH
Confidence 4589999998 89999987774
No 70
>PLN03065 isocitrate dehydrogenase (NADP+); Provisional
Probab=37.48 E-value=20 Score=37.65 Aligned_cols=37 Identities=16% Similarity=0.201 Sum_probs=27.3
Q ss_pred cccEEEEecCCcceEeccceeee-CCEEEEEEeecHHHHH
Q 018224 132 NVDIVVIRENTEGEYSGLEHEVV-PGVVESLKVITKFCSE 170 (359)
Q Consensus 132 ~iDivivREnteG~Y~g~~~~~~-~~va~~~~~~Tr~~~e 170 (359)
..+|+|.|||+||.|.+.+.... +|.. ..++||+..|
T Consensus 195 ~~pI~i~Rha~gd~Y~~iD~vi~~~g~~--~~~~~rEnte 232 (483)
T PLN03065 195 KKPICIGRHAFGDQYRATDTVIKGPGKL--KMVFVPEDGN 232 (483)
T ss_pred CCCeEEeecccCCCcCceEEEEecCCee--EEEeecCCCC
Confidence 48999999999999999987653 4432 3466666555
No 71
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=35.14 E-value=1.4e+02 Score=28.39 Aligned_cols=71 Identities=13% Similarity=0.171 Sum_probs=37.8
Q ss_pred HHHHHHHHHhcCCCc-EEEEEcC-CchhhchHHHHHHHHHHHhhCCceeeceee-------Hh---HHHHHHHhCCCCcc
Q 018224 173 AKYAFEYAYLNYRKK-VTAVHKA-NIMKLADGLFLESCREVATKYPSIKYNEII-------VD---NCCMQLVSKPEQFD 240 (359)
Q Consensus 173 ar~AFe~A~~r~~~~-Vt~v~Ka-Nvl~~tdglf~~~~~eva~eypdI~~~~~~-------vD---~~~~~Lv~~P~~fd 240 (359)
.+.|.++-.++|.++ +.++.-. +... ...-++=+++.-+++ ++.++..+ .+ .++.+|+.++..||
T Consensus 106 ~~~a~~~Li~~Gh~~~I~~i~~~~~~~~--~~~R~~Gy~~Al~~~-Gl~~~~~~i~~~~~~~~~g~~~~~~ll~~~p~id 182 (279)
T PF00532_consen 106 GYEATEYLIKKGHRRPIAFIGGPEDSST--SRERLQGYRDALKEA-GLPIDEEWIFEGDFDYESGYEAARELLESHPDID 182 (279)
T ss_dssp HHHHHHHHHHTTCCSTEEEEEESTTTHH--HHHHHHHHHHHHHHT-TSCEEEEEEEESSSSHHHHHHHHHHHHHTSTT-S
T ss_pred HHHHHHHHHhcccCCeEEEEecCcchHH--HHHHHHHHHHHHHHc-CCCCCcccccccCCCHHHHHHHHHHHHhhCCCCE
Confidence 345666777888888 6665543 3221 111122244443444 22111111 11 45678888888899
Q ss_pred EEEeCC
Q 018224 241 VMVTPN 246 (359)
Q Consensus 241 Viv~~N 246 (359)
.|+|.|
T Consensus 183 ai~~~n 188 (279)
T PF00532_consen 183 AIFCAN 188 (279)
T ss_dssp EEEESS
T ss_pred EEEEeC
Confidence 999988
No 72
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=34.87 E-value=2.3e+02 Score=25.91 Aligned_cols=75 Identities=13% Similarity=0.097 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhc--CCCcEEEEEcC-CchhhchHHHHHHHHHHHhhCCceeecee-----eHh---HHHHHHH-hCCCCc
Q 018224 172 IAKYAFEYAYLN--YRKKVTAVHKA-NIMKLADGLFLESCREVATKYPSIKYNEI-----IVD---NCCMQLV-SKPEQF 239 (359)
Q Consensus 172 iar~AFe~A~~r--~~~~Vt~v~Ka-Nvl~~tdglf~~~~~eva~eypdI~~~~~-----~vD---~~~~~Lv-~~P~~f 239 (359)
..+.+.++..++ |.+++.++.-. +.. ......+-+.+..+++++++.... ..+ .++.+++ ++|..+
T Consensus 109 ~g~~~~~~l~~~~~g~~~i~~i~~~~~~~--~~~~R~~Gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 186 (273)
T cd06309 109 EGRRAADWLAKATGGKGNIVELQGTVGSS--VAIDRKKGFAEVIKKYPNMKIVASQTGDFTRAKGKEVMEALLKAHGDDI 186 (273)
T ss_pred HHHHHHHHHHHHcCCCceEEEEeCCCCCc--hHHHHHHHHHHHHHHCCCCEEeeccCCcccHHHHHHHHHHHHHhCCCCc
Confidence 334444444444 56777777522 221 222334445555556665442111 112 2445666 456579
Q ss_pred cEEEeCCcc
Q 018224 240 DVMVTPNLY 248 (359)
Q Consensus 240 dViv~~Nlf 248 (359)
|+|+|.|-.
T Consensus 187 ~aI~~~~d~ 195 (273)
T cd06309 187 DAVYAHNDE 195 (273)
T ss_pred cEEEECCcH
Confidence 999998744
No 73
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=34.73 E-value=3.1e+02 Score=25.24 Aligned_cols=77 Identities=17% Similarity=0.141 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEE-cCCchhhchHHHHHHHHHHHhhCCceeecee-----eH---hHHHHHHHhCC
Q 018224 166 KFCSERIAKYAFEYAYLNYRKKVTAVH-KANIMKLADGLFLESCREVATKYPSIKYNEI-----IV---DNCCMQLVSKP 236 (359)
Q Consensus 166 r~~~eRiar~AFe~A~~r~~~~Vt~v~-KaNvl~~tdglf~~~~~eva~eypdI~~~~~-----~v---D~~~~~Lv~~P 236 (359)
+.+.+..+++-.+.. .|+++|-++. ..+.. ......+-|++..++++++++... -. -....++++..
T Consensus 106 ~~~g~~~~~~l~~~~--~g~~~i~~l~g~~~~~--~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 181 (272)
T cd06313 106 YFMGASVAQALCNAM--GGKGKIAMLQGALGHT--GAQGRAQGFNDVIKKYPDIEVVDEQPANWDVSKAARIWETWLTKY 181 (272)
T ss_pred HHHHHHHHHHHHHHc--CCCceEEEEECCCCCc--chhHHHHHHHHHHHhCCCCEEEeccCCCCCHHHHHHHHHHHHHhC
Confidence 444555555554432 1566777774 22221 223344556666556664442211 11 12333444433
Q ss_pred CCccEEEeCC
Q 018224 237 EQFDVMVTPN 246 (359)
Q Consensus 237 ~~fdViv~~N 246 (359)
..+|+|+|.|
T Consensus 182 ~~~~ai~~~n 191 (272)
T cd06313 182 PQLDGAFCHN 191 (272)
T ss_pred CCCCEEEECC
Confidence 3589999987
No 74
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=34.52 E-value=1.3e+02 Score=26.75 Aligned_cols=57 Identities=18% Similarity=0.329 Sum_probs=39.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEecCcccCCcHHHHHHHHhc-----Cceeecc
Q 018224 31 AVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIRKN-----KVCLKGG 91 (359)
Q Consensus 31 ~I~vi~GDGIGpEV~~~a~~vl~~~~~~ie~~~~~~g~~~~~lp~et~~~~~~~-----da~l~G~ 91 (359)
+|++|-|..-=-++++++.++|+..|++++.....+. ..|++..+-++++ ++++-++
T Consensus 2 ~V~Ii~gs~SD~~~~~~a~~~L~~~gi~~~~~V~saH----R~p~~l~~~~~~~~~~~~~viIa~A 63 (150)
T PF00731_consen 2 KVAIIMGSTSDLPIAEEAAKTLEEFGIPYEVRVASAH----RTPERLLEFVKEYEARGADVIIAVA 63 (150)
T ss_dssp EEEEEESSGGGHHHHHHHHHHHHHTT-EEEEEE--TT----TSHHHHHHHHHHTTTTTESEEEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHHcCCCEEEEEEecc----CCHHHHHHHHHHhccCCCEEEEEEC
Confidence 6889988777788999999999998866554333322 4688888777664 5555444
No 75
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=34.37 E-value=2.5e+02 Score=25.41 Aligned_cols=77 Identities=13% Similarity=-0.014 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHhhCCceeeceeeH----------hHHHHHHHhC
Q 018224 166 KFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIV----------DNCCMQLVSK 235 (359)
Q Consensus 166 r~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~eypdI~~~~~~v----------D~~~~~Lv~~ 235 (359)
....+..+++..+.. .|+++|-+++-.+. . +...-.+-+++..++|+++.+...+. -..+.++++.
T Consensus 103 ~~~g~~~~~~l~~~~--~g~~~i~~i~~~~~-~-~~~~R~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 178 (273)
T cd06305 103 YSLARLSLDQLVKDL--GGKGNVGYVNVAGF-P-PLDRRYDVWQAVLKAYPGIKEVAELGDVSNNTAQDAAAQVEAVLKK 178 (273)
T ss_pred HHHHHHHHHHHHHHh--CCCCCEEEEEccCC-c-hHHHHHHHHHHHHHHCCCcEEecccccccccchhHHHHHHHHHHHH
Confidence 445555666655543 35567777752221 1 11222234556666777554332221 1234455554
Q ss_pred CCCc--cEEEeCC
Q 018224 236 PEQF--DVMVTPN 246 (359)
Q Consensus 236 P~~f--dViv~~N 246 (359)
.... +.|+|.|
T Consensus 179 ~~~~~~~ai~~~~ 191 (273)
T cd06305 179 YPKGGIDAIWAAW 191 (273)
T ss_pred CCCcccCeEEEcC
Confidence 4556 8888885
No 76
>cd07186 CofD_like LPPG:FO 2-phospho-L-lactate transferase; important in F420 biosynthesis. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis.
Probab=34.32 E-value=1.5e+02 Score=29.46 Aligned_cols=104 Identities=17% Similarity=0.169 Sum_probs=56.2
Q ss_pred CcHHHHHHHHhcCceeeccccCCC---CCC--cccchHHHHhhcCcEEEEEEeecC---C----------CCCC------
Q 018224 73 VPQQVLDSIRKNKVCLKGGLKTPV---GGG--VSSLNVQLRKELDLYAALVNCFNL---P----------GLPT------ 128 (359)
Q Consensus 73 lp~et~~~~~~~da~l~G~~~~p~---~~~--~~s~~~~LR~~ldlyanvRP~~~~---p----------g~~~------ 128 (359)
-.++++++++++|.+++||= +|. .+. ......+||+.=---+.|-|+.-= . |++.
T Consensus 173 ~~p~vl~AI~~AD~IVlGPg-sp~TSI~P~LlVpgI~eAL~~s~A~vV~Vspiig~~~v~Gpa~~~m~a~G~~~s~~gva 251 (303)
T cd07186 173 PAPEVLEAIEDADLVIIGPS-NPVTSIGPILALPGIREALRDKKAPVVAVSPIIGGKAVSGPAAKLMAALGFEPSAAGVA 251 (303)
T ss_pred CCHHHHHHHHhCCEEEECCC-ccHHHhhhhccchhHHHHHHhCCCCEEEEcCCCCCCCCCchHHHHHHHcCCCCcHHHHH
Confidence 46799999999999999993 221 111 123344566664445556665521 1 2211
Q ss_pred -Cccc-ccEEEEecCCcceEeccceeeeCCEEEEEEeecHHHHHHHHHHHH
Q 018224 129 -RHQN-VDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAF 177 (359)
Q Consensus 129 -~~~~-iDivivREnteG~Y~g~~~~~~~~va~~~~~~Tr~~~eRiar~AF 177 (359)
.|++ +|..|+=+.-.+.-...+.....=....+.--+.+..+|++|.+.
T Consensus 252 ~~Y~~~~d~~vid~~D~~~~~~~~~~g~~v~~~~t~m~~~~~~~~la~~~l 302 (303)
T cd07186 252 EIYGDLLDGFVIDEADRALADAIEALGIEVSRTDTLMTDEEDKIRLAREVL 302 (303)
T ss_pred HHhhccccEEEEcccccccchhcccCCceeEecCccCCCHHHHHHHHHHHh
Confidence 1344 588887553332211111100011234556667888888888764
No 77
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=32.98 E-value=1.6e+02 Score=26.82 Aligned_cols=74 Identities=8% Similarity=0.062 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHhhCCceee-------ceeeHhHHHHHHHhCCCCccEEE
Q 018224 171 RIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKY-------NEIIVDNCCMQLVSKPEQFDVMV 243 (359)
Q Consensus 171 Riar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~eypdI~~-------~~~~vD~~~~~Lv~~P~~fdViv 243 (359)
+..+.|.++-.++|++++-++.... .. +.....+-+++..+++ ++.+ +..-.-.++.++.+++...++|+
T Consensus 101 ~~g~~a~~~L~~~g~~~i~~~~~~~-~~-~~~~R~~gf~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~ 177 (263)
T cd06280 101 AAARTLVEHLVAQGYRRIGGLFGNA-ST-TGAERRAGYEDAMRRH-GLAPDARFVAPTAEAAEAALAAWLAAPERPEALV 177 (263)
T ss_pred HHHHHHHHHHHHCCCceEEEEeCCC-CC-CHHHHHHHHHHHHHHc-CCCCChhhcccCHHHHHHHHHHHhcCCCCCcEEE
Confidence 3555666666677878887764322 11 2222223344443322 1111 11111225567776666789999
Q ss_pred eCCc
Q 018224 244 TPNL 247 (359)
Q Consensus 244 ~~Nl 247 (359)
|.|-
T Consensus 178 ~~~d 181 (263)
T cd06280 178 ASNG 181 (263)
T ss_pred ECCc
Confidence 9664
No 78
>PRK02746 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=32.95 E-value=45 Score=33.69 Aligned_cols=21 Identities=33% Similarity=0.476 Sum_probs=17.5
Q ss_pred cceEEEEcCC--CCcHHHHHHHH
Q 018224 29 PRAVTLIPGD--GIGPLVTNAVE 49 (359)
Q Consensus 29 ~~~I~vi~GD--GIGpEV~~~a~ 49 (359)
+.+|++-.|| ||||||+-.+.
T Consensus 9 ~p~IaIT~GDpaGIGPEii~ka~ 31 (345)
T PRK02746 9 RPRLAITLGDPAGIGPEVILKAL 31 (345)
T ss_pred CCcEEEeCCCCcchHHHHHHHHH
Confidence 3589999998 89999987764
No 79
>PRK09653 eutD phosphotransacetylase; Reviewed
Probab=32.21 E-value=2.6e+02 Score=27.63 Aligned_cols=98 Identities=21% Similarity=0.130 Sum_probs=60.2
Q ss_pred cHHHHHHHHHHHHHHHHhcCCC-cEEEE---EcCCchhhchHHHHHHHHHHHhhCCceeecee-eHhHHHHH------HH
Q 018224 165 TKFCSERIAKYAFEYAYLNYRK-KVTAV---HKANIMKLADGLFLESCREVATKYPSIKYNEI-IVDNCCMQ------LV 233 (359)
Q Consensus 165 Tr~~~eRiar~AFe~A~~r~~~-~Vt~v---~KaNvl~~tdglf~~~~~eva~eypdI~~~~~-~vD~~~~~------Lv 233 (359)
|-+..-.|+..|-++|+.-|.. ||-+. +|.+---.+...-++.++-+.+++|+..++=. .+|++.-. ..
T Consensus 173 ~~e~l~~ia~~a~~~ar~lG~~PkVAlLs~s~~Gs~~~~~~~~~~ea~~ll~~~~~~~~vdGel~~D~A~~~~~~~~k~~ 252 (324)
T PRK09653 173 TAEQLAEIAINSAETAKAFGIDPKVAMLSFSTKGSAKGPEVDKVQEATEIAKELAPDLKIDGELQFDAAFVPEVAAKKAP 252 (324)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCeEEEEeccccCCCCCCcHHHHHHHHHHHHhhCCCCeEEecchHHHhCCHHHHHhhCC
Confidence 4556667788888999876532 44444 33332212333446666555567898887744 46766332 11
Q ss_pred hCC--CCccEEEeCCc-chhhHHHhhhhhcCC
Q 018224 234 SKP--EQFDVMVTPNL-YGNLVSNTAAGIAGG 262 (359)
Q Consensus 234 ~~P--~~fdViv~~Nl-fGDILSDlaa~l~Gg 262 (359)
.+| ++-||+|.||+ =|||+--+.-.+.|+
T Consensus 253 ~s~v~G~AnvLi~P~l~agNi~yK~l~~~~~~ 284 (324)
T PRK09653 253 GSPVAGKANVFVFPSLEAGNIGYKIAQRLGGF 284 (324)
T ss_pred CCccCCcCCEEEcCChHHhHHHHHHHHHhcCC
Confidence 222 36689999999 589988877766554
No 80
>PRK12861 malic enzyme; Reviewed
Probab=32.16 E-value=2.6e+02 Score=31.34 Aligned_cols=98 Identities=14% Similarity=0.035 Sum_probs=60.5
Q ss_pred cHHHHHHHHHHHHHHHHhcCC-CcEEEEE---cCCchhhchHHHHHHHHHHHhhCCceeece-eeHhHHHHHHH------
Q 018224 165 TKFCSERIAKYAFEYAYLNYR-KKVTAVH---KANIMKLADGLFLESCREVATKYPSIKYNE-IIVDNCCMQLV------ 233 (359)
Q Consensus 165 Tr~~~eRiar~AFe~A~~r~~-~~Vt~v~---KaNvl~~tdglf~~~~~eva~eypdI~~~~-~~vD~~~~~Lv------ 233 (359)
|-+....|+..|.++|+.-|- -||-+.. +.+.-..+....++..+-+.+++|++.++- +..|++.-.-+
T Consensus 611 ~aeqla~Ia~~aa~~ak~lGiePkVAlLS~St~GS~~~~~~~km~eA~~l~~~~~pd~~vdGemq~DaAl~~e~a~~K~p 690 (764)
T PRK12861 611 DAEQIAEFTIAAARQMEWLNLTPKVALLSRSNFGSGSAASGVKMRRALEIVREQAPDLEADGEMHGDCALDEGLRARLLP 690 (764)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCeEEEEeccccCCCCCCchhHHHHHHHHHHhhCCCcEEEecCcHHHhCCHHHHHhcCC
Confidence 344555667777888877553 3465554 322211122344555554555689887764 44676543322
Q ss_pred hC--CCCccEEEeCCc-chhhHHHhhhhhcCC
Q 018224 234 SK--PEQFDVMVTPNL-YGNLVSNTAAGIAGG 262 (359)
Q Consensus 234 ~~--P~~fdViv~~Nl-fGDILSDlaa~l~Gg 262 (359)
.+ -++-||+|+||+ =|||+-.+.-.+.|+
T Consensus 691 ~s~vaG~ANVLVfPnLeAGNI~yKll~~l~g~ 722 (764)
T PRK12861 691 MSPLKGAANLLVCPNVDAGNIAYNLLKTEAGS 722 (764)
T ss_pred CCcCCCcCCEEEECCcchhhHHHHHHHHHcCC
Confidence 12 246789999999 999999988877754
No 81
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=31.84 E-value=3e+02 Score=25.53 Aligned_cols=73 Identities=16% Similarity=0.177 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhcCCCcEEEEE-cCCchhhchHHHHHHHHHHHhhC---Ccee-ece-eeHh---HHHHHHHhCCCCccEE
Q 018224 172 IAKYAFEYAYLNYRKKVTAVH-KANIMKLADGLFLESCREVATKY---PSIK-YNE-IIVD---NCCMQLVSKPEQFDVM 242 (359)
Q Consensus 172 iar~AFe~A~~r~~~~Vt~v~-KaNvl~~tdglf~~~~~eva~ey---pdI~-~~~-~~vD---~~~~~Lv~~P~~fdVi 242 (359)
.+..|.++-.++|.+++-.+. ..+.. ...-+.+-+++..+++ +.+. +.. .-.+ ..+.+++..+..+|+|
T Consensus 105 ~~~~a~~~L~~~G~~~I~~i~~~~~~~--~~~~R~~gf~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai 182 (269)
T cd06287 105 TARMLLEHLRAQGARQIALIVGSARRN--SYLEAEAAYRAFAAEHGMPPVVLRVDEAGGEEAGYAACAQLLAQHPDLDAL 182 (269)
T ss_pred HHHHHHHHHHHcCCCcEEEEeCCcccc--cHHHHHHHHHHHHHHcCCCcceeEecCCCChHHHHHHHHHHHhCCCCCCEE
Confidence 345566666677888887774 33321 1111223344443332 1111 111 1112 2334566554578999
Q ss_pred EeCC
Q 018224 243 VTPN 246 (359)
Q Consensus 243 v~~N 246 (359)
+|.|
T Consensus 183 ~~~~ 186 (269)
T cd06287 183 CVPV 186 (269)
T ss_pred EEcC
Confidence 9985
No 82
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=31.71 E-value=2.6e+02 Score=25.23 Aligned_cols=74 Identities=8% Similarity=-0.017 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhcCCCcEEEEE-cCCchhhchHHHHHHHHHHHhhCC-ceee------cee--eHhHHHHHHHhCCCCcc
Q 018224 171 RIAKYAFEYAYLNYRKKVTAVH-KANIMKLADGLFLESCREVATKYP-SIKY------NEI--IVDNCCMQLVSKPEQFD 240 (359)
Q Consensus 171 Riar~AFe~A~~r~~~~Vt~v~-KaNvl~~tdglf~~~~~eva~eyp-dI~~------~~~--~vD~~~~~Lv~~P~~fd 240 (359)
..++.|.++..++|.++|-++. ..+.. ....+.+-|.+..+++. ++.. +.- -.-....+++++...+|
T Consensus 102 ~~~~~a~~~l~~~g~~~i~~l~~~~~~~--~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 179 (269)
T cd06288 102 QGGYDATRHLLAAGHRRIAFINGEPWML--AAKDRLKGYRQALAEAGIPFDPDLVVHGDWSADDGYEAAAALLDLDDRPT 179 (269)
T ss_pred HHHHHHHHHHHHcCCceEEEEeCCccch--hHHHHHHHHHHHHHHcCCCCCHHHeEeCCCChHHHHHHHHHHHhCCCCCC
Confidence 3445566666666778888874 32311 22233444555555542 1111 111 11133445665544799
Q ss_pred EEEeCC
Q 018224 241 VMVTPN 246 (359)
Q Consensus 241 Viv~~N 246 (359)
+|+|.|
T Consensus 180 ai~~~~ 185 (269)
T cd06288 180 AIFCGN 185 (269)
T ss_pred EEEEeC
Confidence 999876
No 83
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=31.64 E-value=1.7e+02 Score=26.43 Aligned_cols=59 Identities=17% Similarity=0.247 Sum_probs=45.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEecCcccCCcHHHHHHHHh-----cCceeecccc
Q 018224 31 AVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIRK-----NKVCLKGGLK 93 (359)
Q Consensus 31 ~I~vi~GDGIGpEV~~~a~~vl~~~~~~ie~~~~~~g~~~~~lp~et~~~~~~-----~da~l~G~~~ 93 (359)
+|++|-|.--=-++|+.+.++|+..|++.|...+.+.. -|+..++-+++ .++++-|+=+
T Consensus 4 ~V~IIMGS~SD~~~mk~Aa~~L~~fgi~ye~~VvSAHR----TPe~m~~ya~~a~~~g~~viIAgAGg 67 (162)
T COG0041 4 KVGIIMGSKSDWDTMKKAAEILEEFGVPYEVRVVSAHR----TPEKMFEYAEEAEERGVKVIIAGAGG 67 (162)
T ss_pred eEEEEecCcchHHHHHHHHHHHHHcCCCeEEEEEeccC----CHHHHHHHHHHHHHCCCeEEEecCcc
Confidence 89999998888999999999999999888877776654 46665554432 4557777643
No 84
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=31.42 E-value=2.8e+02 Score=25.29 Aligned_cols=59 Identities=17% Similarity=0.223 Sum_probs=32.1
Q ss_pred CCCcEEEEE-cCCchhhchHHHHHHHHHHHhhCCceeecee-e----Hh---HHHHHHHhCCCCccEEEeCC
Q 018224 184 YRKKVTAVH-KANIMKLADGLFLESCREVATKYPSIKYNEI-I----VD---NCCMQLVSKPEQFDVMVTPN 246 (359)
Q Consensus 184 ~~~~Vt~v~-KaNvl~~tdglf~~~~~eva~eypdI~~~~~-~----vD---~~~~~Lv~~P~~fdViv~~N 246 (359)
|+++|.++. ..+ . +.....+-+.+..++|| +++... . .+ ..+.+++++..++|+|+|.|
T Consensus 126 g~~~i~~~~g~~~-~--~~~~R~~gf~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~ 193 (274)
T cd06311 126 GNGNIVVLRGIPT-P--IDNERVDAFDAAIAKYP-IKILDRQYANWNRDDAFSVMQDLLTKFPKIDAVWAHD 193 (274)
T ss_pred CCCeEEEEECCCC-c--chhHHHHHHHHHHhhCC-cEEEeccCCCCcHHHHHHHHHHHHHhCCCcCEEEECC
Confidence 567777774 222 2 23344566777766777 543221 1 11 22335554433689999987
No 85
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=31.06 E-value=3.1e+02 Score=24.16 Aligned_cols=75 Identities=7% Similarity=-0.031 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHhhCCceeecee-----eHh---HHHHHHHhCCCCccEEE
Q 018224 172 IAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEI-----IVD---NCCMQLVSKPEQFDVMV 243 (359)
Q Consensus 172 iar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~eypdI~~~~~-----~vD---~~~~~Lv~~P~~fdViv 243 (359)
..+.+.+++.+.+.++|.+++-.+-.. ......+.+++..+++++++.... -.+ ..+.+++..-.+.|+|+
T Consensus 105 ~~~~~~~~l~~~g~~~i~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 183 (264)
T cd01537 105 AGYLAGEHLAEKGHRRIALLAGPLGSS-TARERVAGFKDALKEAGPIEIVLVQEGDWDAEKGYQAAEELLTAHPDPTAIF 183 (264)
T ss_pred HHHHHHHHHHHhcCCcEEEEECCCCCC-cHHHHHHHHHHHHHHcCCcChhhhccCCCCHHHHHHHHHHHHhcCCCCCEEE
Confidence 445666666766778888886543321 223334445544444431211111 112 23445555433688888
Q ss_pred eCCc
Q 018224 244 TPNL 247 (359)
Q Consensus 244 ~~Nl 247 (359)
+.|-
T Consensus 184 ~~~~ 187 (264)
T cd01537 184 AAND 187 (264)
T ss_pred EcCc
Confidence 8874
No 86
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=30.74 E-value=1.8e+02 Score=23.99 Aligned_cols=56 Identities=14% Similarity=0.201 Sum_probs=39.5
Q ss_pred cceEEEEcCCCCcHHHHH-HHHHHHHHcCCCeeEEEEEecCcccCCcHHHHHHHHhcCceeeccc
Q 018224 29 PRAVTLIPGDGIGPLVTN-AVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIRKNKVCLKGGL 92 (359)
Q Consensus 29 ~~~I~vi~GDGIGpEV~~-~a~~vl~~~~~~ie~~~~~~g~~~~~lp~et~~~~~~~da~l~G~~ 92 (359)
..+|.++=|-|+|..++- ......+..+++++.+.+..+.. . +...++|++|.||.
T Consensus 3 ~kkIllvC~~G~sTSll~~km~~~~~~~gi~~~V~A~~~~~~-----~---~~~~~~DviLl~Pq 59 (106)
T PRK10499 3 KKHIYLFCSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLA-----G---EKGQNADVVLLGPQ 59 (106)
T ss_pred CCEEEEECCCCccHHHHHHHHHHHHHHCCCCEEEEEeecchh-----h---ccccCCCEEEECHH
Confidence 458999999999999888 66666666687777665443211 1 12446899999984
No 87
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=30.53 E-value=2.8e+02 Score=25.01 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=15.5
Q ss_pred CCCcHHHHHHHHHHHHHcCCCeeE
Q 018224 38 DGIGPLVTNAVEQVMEAMHAPIYF 61 (359)
Q Consensus 38 DGIGpEV~~~a~~vl~~~~~~ie~ 61 (359)
|---.++.....+.++..|..+.+
T Consensus 11 ~~~~~~~~~~i~~~~~~~g~~~~~ 34 (268)
T cd06273 11 NAIFARVIQAFQETLAAHGYTLLV 34 (268)
T ss_pred CchHHHHHHHHHHHHHHCCCEEEE
Confidence 445566777777777777765554
No 88
>PRK05312 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=30.38 E-value=44 Score=33.60 Aligned_cols=20 Identities=40% Similarity=0.612 Sum_probs=16.7
Q ss_pred ceEEEEcCC--CCcHHHHHHHH
Q 018224 30 RAVTLIPGD--GIGPLVTNAVE 49 (359)
Q Consensus 30 ~~I~vi~GD--GIGpEV~~~a~ 49 (359)
.+|++-.|| ||||||+-.+.
T Consensus 4 p~iaIT~GDpaGIGpEii~ka~ 25 (336)
T PRK05312 4 RPLALSLGDPAGIGPEIALKAW 25 (336)
T ss_pred CeEEEeCCCCcchHHHHHHHHH
Confidence 479999998 89999987663
No 89
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=30.26 E-value=3.4e+02 Score=24.44 Aligned_cols=50 Identities=4% Similarity=0.025 Sum_probs=26.0
Q ss_pred cHHHHHHHHHHHHHcCCCeeEEEEEecCcccCCcHHHHHHH--HhcCceeeccc
Q 018224 41 GPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSI--RKNKVCLKGGL 92 (359)
Q Consensus 41 GpEV~~~a~~vl~~~~~~ie~~~~~~g~~~~~lp~et~~~~--~~~da~l~G~~ 92 (359)
-.++.....+.++..+..+.+....-.. .....+.++.+ .+.|+++.-+.
T Consensus 14 ~~~~~~gi~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~vdgiii~~~ 65 (264)
T cd01574 14 PSSTLAAIESAAREAGYAVTLSMLAEAD--EEALRAAVRRLLAQRVDGVIVNAP 65 (264)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEeCCCCc--hHHHHHHHHHHHhcCCCEEEEeCC
Confidence 3567777777777766665543221110 01122334333 35788877554
No 90
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=30.04 E-value=1.8e+02 Score=31.49 Aligned_cols=106 Identities=20% Similarity=0.184 Sum_probs=69.8
Q ss_pred EEEEEEeecHHHHHH-HHHHHHHHHHhc--CCC--------cEEEEEcCCchhhchHHHHHHHHHHHhhCCceeeceee-
Q 018224 157 VVESLKVITKFCSER-IAKYAFEYAYLN--YRK--------KVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEII- 224 (359)
Q Consensus 157 va~~~~~~Tr~~~eR-iar~AFe~A~~r--~~~--------~Vt~v~KaNvl~~tdglf~~~~~eva~eypdI~~~~~~- 224 (359)
++.-+...+-.+.|| +.|.|.+.|++. ++| +|+++-.+=--+..-.+|.+..+| ..-|..+++.+-
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 241 (578)
T PRK15490 164 LALCTGSLGSGGAERQISRLAIEIARKYRQKGKIGGLKVEEPVELIIRSLTPELRQDFFLKEVLE--EQVEVLEIAKITG 241 (578)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHHHHHhcccccccccccceeEEEeecCcccCcchhHHHHHh--cCCceEEeeccch
Confidence 555555566666654 788999999763 233 688888776666677789888877 223333332221
Q ss_pred --HhHH------------------------HHHHHhCCCCccEEEeCCcchhhHHHhhhhhcCCCCc
Q 018224 225 --VDNC------------------------CMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGV 265 (359)
Q Consensus 225 --vD~~------------------------~~~Lv~~P~~fdViv~~NlfGDILSDlaa~l~GglGl 265 (359)
.|.+ .+.+++. .++|||-|.|+...++.-++|-++|-+-+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ir~-~rpDIVHt~~~~a~l~g~laA~lagvpvi 307 (578)
T PRK15490 242 NLFDDATIESPELRLLLSHLPPVCKYGIKHLVPHLCE-RKLDYLSVWQDGACLMIALAALIAGVPRI 307 (578)
T ss_pred hhhhhccccchHHHHHHhcCChHHHHHHHHHHHHHHH-cCCCEEEEcCcccHHHHHHHHHhcCCCEE
Confidence 2222 1233333 78899999999989999999988875543
No 91
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=29.92 E-value=4e+02 Score=24.15 Aligned_cols=61 Identities=7% Similarity=0.006 Sum_probs=31.7
Q ss_pred eEEEEcCCCCc---HHHHHHHHHHHHHc---CCCeeEEEEEecCcccCCcHHHHHHH--HhcCceeeccc
Q 018224 31 AVTLIPGDGIG---PLVTNAVEQVMEAM---HAPIYFEKYEVHGDMKRVPQQVLDSI--RKNKVCLKGGL 92 (359)
Q Consensus 31 ~I~vi~GDGIG---pEV~~~a~~vl~~~---~~~ie~~~~~~g~~~~~lp~et~~~~--~~~da~l~G~~ 92 (359)
+|+++--|--. .+++....+.++.. |..+++..++...+.. .-.+.++.+ ++.|+++..+.
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~l~i~~~~~~~~-~~~~~~~~~~~~~vdgiIi~~~ 69 (272)
T cd06300 1 KIGLSNSYAGNTWRAQMLDEFKAQAKELKKAGLISEFIVTSADGDVA-QQIADIRNLIAQGVDAIIINPA 69 (272)
T ss_pred CeEEeccccCChHHHHHHHHHHHHHHhhhccCCeeEEEEecCCCCHH-HHHHHHHHHHHcCCCEEEEeCC
Confidence 35555433222 24666666777777 7666666665543210 011222221 36788888765
No 92
>cd06063 H2MP_Cyano-H2up This group of endopeptidases include HupW enzymes that are specific to the cyanobacterial hydrogenase and are involved in the C-terminal cleavage of the hydrogenase large subunit precursor protein. Cyanobacterial nickel-iron (NiFe)-hydrogenases are found exclusively in the N2-fixing strains and are encoded by hup (hydrogen uptake) genes. These uptake hydrogenases are heterodimers with a large (hupL) and small subunit (hupS) and catalyze the consumption of the H2 produced during N2 fixation. Sequence similarity shows that the putative metal-binding resides are well conserved in this group of hydrogen maturation proteases. This group also includes such proteins as the hydrogenase III from Aquifex aeolicus.
Probab=29.61 E-value=78 Score=27.42 Aligned_cols=47 Identities=17% Similarity=0.251 Sum_probs=33.1
Q ss_pred CCCcHHHHHHHHHHHHHcCCCeeEEEEEecCcccCCcHHHHHHHHhcCceee-ccc
Q 018224 38 DGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIRKNKVCLK-GGL 92 (359)
Q Consensus 38 DGIGpEV~~~a~~vl~~~~~~ie~~~~~~g~~~~~lp~et~~~~~~~da~l~-G~~ 92 (359)
||+|+.|+++-.+ ...+-+++.++.|. .+.+.+..++++|.+++ -++
T Consensus 14 DG~G~~v~~~L~~----~~~~~~v~~id~gt----~~~~l~~~l~~~d~vIiVDA~ 61 (146)
T cd06063 14 DGVGPILIRRLQA----YLLPPHVRLVDCGT----AGMEVMFRARGAKQLIIIDAS 61 (146)
T ss_pred CcHHHHHHHHHhh----cCCCCCeEEEECCC----CHHHHHHHhcCCCEEEEEEeC
Confidence 7999998877643 33444566677764 68888888888887765 443
No 93
>PRK07742 phosphate butyryltransferase; Validated
Probab=29.38 E-value=5.5e+02 Score=25.08 Aligned_cols=108 Identities=16% Similarity=0.142 Sum_probs=62.7
Q ss_pred cHHHHHHHHHHHHHHHHhcCC--CcEEEEEcCCchhhchHHHHHHHH--HHHh--hCCceeecee-eHhHHHHH------
Q 018224 165 TKFCSERIAKYAFEYAYLNYR--KKVTAVHKANIMKLADGLFLESCR--EVAT--KYPSIKYNEI-IVDNCCMQ------ 231 (359)
Q Consensus 165 Tr~~~eRiar~AFe~A~~r~~--~~Vt~v~KaNvl~~tdglf~~~~~--eva~--eypdI~~~~~-~vD~~~~~------ 231 (359)
|-+..-.|+..|-++|+.-|. -||-+..=.+--......-++.++ +..+ ++|+..+|-. .+|++.-.
T Consensus 148 ~~e~l~~ia~~a~~~a~~lGie~PkVAlLs~gee~~k~~~~~~eA~~l~~~~~~~~~~~~~vdG~l~~D~A~~~~~a~~k 227 (299)
T PRK07742 148 DLEQKAAIIQNAVEVARAIGIDLPKVAPLAAVEVVNPAMQATIDAAALTQMNRRGQIKNCVVDGPLALDNAVSQIAAEHK 227 (299)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCeEEEEecccCCCCCCHHHHHHHHHHHHHhhCCCCCeEEeechHHHHhcCHHHHHHh
Confidence 455566778888899987653 356555433222122334344322 1222 4688877544 35655443
Q ss_pred HHhCC--CCccEEEeCCc-chhhHHHhhhhhcCCCCccceeeeCCC
Q 018224 232 LVSKP--EQFDVMVTPNL-YGNLVSNTAAGIAGGTGVMPGGNVGAD 274 (359)
Q Consensus 232 Lv~~P--~~fdViv~~Nl-fGDILSDlaa~l~GglGl~psanig~~ 274 (359)
-..+| ++-||+|.||+ -|||+--+..-+.|+ . ..+.-+|..
T Consensus 228 ~~~s~v~G~Anvli~Pnl~agNi~~K~l~~~~~~-~-~g~il~G~~ 271 (299)
T PRK07742 228 GIVSDVAGKADILLVPTIEAGNVLYKSLVYFADA-K-VGAMIAGAK 271 (299)
T ss_pred CCCCCCCCcCCEEEeCChHHHHHHHHHHHHhcCC-c-EeceeeccC
Confidence 11222 36689999999 699988887777665 5 444556644
No 94
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=29.34 E-value=2.1e+02 Score=22.65 Aligned_cols=66 Identities=20% Similarity=0.056 Sum_probs=34.7
Q ss_pred HHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHhh--CCceeeceeeHhHHHHHHHhCCCCccEEEeCCcchh
Q 018224 175 YAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATK--YPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGN 250 (359)
Q Consensus 175 ~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~e--ypdI~~~~~~vD~~~~~Lv~~P~~fdViv~~NlfGD 250 (359)
.++.+|++.+..+|+.++.+..+ .+.+++-.++ .+++++.. -|.. ..+-..+..||+|++.+-..+
T Consensus 33 ~~~~l~~~~~~~~v~~vD~s~~~-------~~~a~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~D~v~~~~~~~~ 100 (124)
T TIGR02469 33 ITIEAARLVPNGRVYAIERNPEA-------LRLIERNARRFGVSNIVIVE--GDAP-EALEDSLPEPDRVFIGGSGGL 100 (124)
T ss_pred HHHHHHHHCCCceEEEEcCCHHH-------HHHHHHHHHHhCCCceEEEe--cccc-ccChhhcCCCCEEEECCcchh
Confidence 56667776545689999854332 3333333333 33343322 2211 112234578999998764433
No 95
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=29.12 E-value=94 Score=31.02 Aligned_cols=43 Identities=23% Similarity=0.322 Sum_probs=31.1
Q ss_pred HHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHhhCCceeeceeeHh
Q 018224 175 YAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVD 226 (359)
Q Consensus 175 ~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~eypdI~~~~~~vD 226 (359)
||+|+|+ ||- +|.++- | +..-...+..|+.++|+ |++....+|
T Consensus 65 yA~eLAk-rG~-nvvLIs-----R-t~~KL~~v~kEI~~~~~-vev~~i~~D 107 (312)
T KOG1014|consen 65 YARELAK-RGF-NVVLIS-----R-TQEKLEAVAKEIEEKYK-VEVRIIAID 107 (312)
T ss_pred HHHHHHH-cCC-EEEEEe-----C-CHHHHHHHHHHHHHHhC-cEEEEEEEe
Confidence 8999998 464 477764 2 44455778888888887 777776665
No 96
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=28.82 E-value=2.7e+02 Score=25.02 Aligned_cols=26 Identities=4% Similarity=-0.024 Sum_probs=18.5
Q ss_pred CCCcHHHHHHHHHHHHHcCCCeeEEE
Q 018224 38 DGIGPLVTNAVEQVMEAMHAPIYFEK 63 (359)
Q Consensus 38 DGIGpEV~~~a~~vl~~~~~~ie~~~ 63 (359)
+---.++.....+.+++.|..+.+..
T Consensus 15 ~~~~~~~~~~i~~~~~~~g~~~~~~~ 40 (268)
T cd06271 15 DPFFAEFLSGLSEALAEHGYDLVLLP 40 (268)
T ss_pred CccHHHHHHHHHHHHHHCCceEEEec
Confidence 45566788888888888777666543
No 97
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=28.38 E-value=2.7e+02 Score=25.09 Aligned_cols=20 Identities=5% Similarity=0.175 Sum_probs=14.6
Q ss_pred HHHHHHhCCCCccEEEeCCc
Q 018224 228 CCMQLVSKPEQFDVMVTPNL 247 (359)
Q Consensus 228 ~~~~Lv~~P~~fdViv~~Nl 247 (359)
++.++++++..+|+|+|.|-
T Consensus 162 ~~~~~l~~~~~~~ai~~~~d 181 (261)
T cd06272 162 AAKKLLKESDLPTAIICGSY 181 (261)
T ss_pred HHHHHHcCCCCCCEEEECCc
Confidence 44566666667899999885
No 98
>KOG0189 consensus Phosphoadenosine phosphosulfate reductase [Amino acid transport and metabolism]
Probab=28.27 E-value=1.4e+02 Score=28.46 Aligned_cols=62 Identities=13% Similarity=0.109 Sum_probs=45.7
Q ss_pred HHHHHhcCC-CcEEEEEcCCchhhchHHHHHHHHHHHhhCCceeeceeeHhHHHH-HHHhCCCCccEE
Q 018224 177 FEYAYLNYR-KKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCM-QLVSKPEQFDVM 242 (359)
Q Consensus 177 Fe~A~~r~~-~~Vt~v~KaNvl~~tdglf~~~~~eva~eypdI~~~~~~vD~~~~-~Lv~~P~~fdVi 242 (359)
.+|+.+.++ -+|..++-....+.|-. .+++|.+.|++|.++.+.-|++.. .++++-..|-.+
T Consensus 62 id~~~~~~~~~~l~~idT~~~~PeT~~----l~d~VekkY~~i~I~~~~pd~~e~ea~~~~K~~~~~~ 125 (261)
T KOG0189|consen 62 IDMLSKTGRPFRLFFIDTLHHFPETLR----LFDAVEKKYGNIRIHVYFPDAVEVEALFASKGGFSLW 125 (261)
T ss_pred HHHHHHcCCCceeEEeeccccChHHHH----HHHHHHHhcCceEEEEEcchhHHHHHHHHhccchhhe
Confidence 467777654 47888887777776644 456788899999999999999876 457776666433
No 99
>PRK03946 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=27.97 E-value=43 Score=33.31 Aligned_cols=19 Identities=26% Similarity=0.476 Sum_probs=16.1
Q ss_pred ceEEEEcCC--CCcHHHHHHH
Q 018224 30 RAVTLIPGD--GIGPLVTNAV 48 (359)
Q Consensus 30 ~~I~vi~GD--GIGpEV~~~a 48 (359)
.+|++--|| ||||||+-.+
T Consensus 2 p~iaiT~GDpaGIGpEii~ka 22 (307)
T PRK03946 2 KKIAISIGDINGIGLEIALKS 22 (307)
T ss_pred CeEEEcCCCCcccHHHHHHHh
Confidence 478888888 8999998777
No 100
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=27.68 E-value=77 Score=26.06 Aligned_cols=38 Identities=18% Similarity=0.320 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHhhCC
Q 018224 166 KFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYP 216 (359)
Q Consensus 166 r~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~eyp 216 (359)
....|||.|.|.+ -|- . + |..+|.-|+.+|+|++++|-
T Consensus 23 ~keaERigr~AlK----aGL---~-----e-ieI~d~eL~~~FeeIa~RFr 60 (92)
T PF07820_consen 23 TKEAERIGRIALK----AGL---G-----E-IEISDAELQAAFEEIAARFR 60 (92)
T ss_pred HHHHHHHHHHHHH----ccc---c-----c-ccCCHHHHHHHHHHHHHHHh
Confidence 4567888887754 331 1 1 33578899999999998874
No 101
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=27.58 E-value=4.6e+02 Score=24.13 Aligned_cols=77 Identities=5% Similarity=-0.037 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHhhCCceeeceee-----H---hHHHHHHHhCCC
Q 018224 166 KFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEII-----V---DNCCMQLVSKPE 237 (359)
Q Consensus 166 r~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~eypdI~~~~~~-----v---D~~~~~Lv~~P~ 237 (359)
..+.+.++++-.+.. +|++++-++.-..-. +.-.-.+-|++..+++|+++..... . -..+.++++...
T Consensus 114 ~~~g~~~~~~L~~~~--~g~~~i~~l~~~~~~--~~~~R~~gf~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 189 (280)
T cd06303 114 AAGARLLADYFIKRY--PNHARYAMLYFSPGY--ISTARGDTFIDCVHARNNWTLTSEFYTDATRQKAYQATSDILSNNP 189 (280)
T ss_pred HHHHHHHHHHHHHhc--CCCcEEEEEECCCCc--chhHHHHHHHHHHHhCCCceEEEeecCCCCHHHHHHHHHHHHHhCC
Confidence 444555555443321 466777776422211 1111123455555666655422111 1 124456665544
Q ss_pred CccEEEeCC
Q 018224 238 QFDVMVTPN 246 (359)
Q Consensus 238 ~fdViv~~N 246 (359)
++|.|+|.|
T Consensus 190 ~~~ai~~~n 198 (280)
T cd06303 190 DVDFIYACS 198 (280)
T ss_pred CCcEEEECC
Confidence 789999976
No 102
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional
Probab=27.36 E-value=47 Score=33.27 Aligned_cols=20 Identities=30% Similarity=0.554 Sum_probs=16.6
Q ss_pred ceEEEEcCC--CCcHHHHHHHH
Q 018224 30 RAVTLIPGD--GIGPLVTNAVE 49 (359)
Q Consensus 30 ~~I~vi~GD--GIGpEV~~~a~ 49 (359)
++|++--|| ||||||+-.+.
T Consensus 3 ~~iaIT~GDpaGIGpEii~ka~ 24 (326)
T PRK03371 3 KIIAVTMGDPAGIGPEIIIKSL 24 (326)
T ss_pred CcEEEeCCCCcchHHHHHHHHh
Confidence 568899998 89999987664
No 103
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=27.19 E-value=3.8e+02 Score=23.82 Aligned_cols=78 Identities=13% Similarity=0.139 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHhhCCceeeceee-----H---hHHHHHHHhCCC
Q 018224 166 KFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEII-----V---DNCCMQLVSKPE 237 (359)
Q Consensus 166 r~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~eypdI~~~~~~-----v---D~~~~~Lv~~P~ 237 (359)
....+.++++..+.. +|.+++.++.-.+-.. +...+.+-+++..++.+++++.... . -..+.++++...
T Consensus 104 ~~~~~~~~~~l~~~~--~g~~~i~~i~~~~~~~-~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (267)
T cd01536 104 YEAGRLAGEYLAKLL--GGKGKVAIIEGPPGSS-NAQERVKGFRDALKEYPDIEIVAVQDGNWDREKALQAMEDLLQANP 180 (267)
T ss_pred HHHHHHHHHHHHHHh--CCCceEEEEEcccccc-hHHHHHHHHHHHHHhCCCcEEEEEecCCCcHHHHHHHHHHHHHhCC
Confidence 344444444443322 1567777774332211 2234455566665554333322211 1 135566665544
Q ss_pred CccEEEeCC
Q 018224 238 QFDVMVTPN 246 (359)
Q Consensus 238 ~fdViv~~N 246 (359)
.+++|++.|
T Consensus 181 ~~~~i~~~~ 189 (267)
T cd01536 181 DIDAIFAAN 189 (267)
T ss_pred CccEEEEec
Confidence 689999988
No 104
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=27.11 E-value=1.8e+02 Score=23.41 Aligned_cols=54 Identities=15% Similarity=0.148 Sum_probs=35.9
Q ss_pred eEEEEcCCCCcHHHHH-HHHHHHHHcCCCeeEEEEEecCcccCCcHHHHHHHHhcCceeeccc
Q 018224 31 AVTLIPGDGIGPLVTN-AVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIRKNKVCLKGGL 92 (359)
Q Consensus 31 ~I~vi~GDGIGpEV~~-~a~~vl~~~~~~ie~~~~~~g~~~~~lp~et~~~~~~~da~l~G~~ 92 (359)
+|.++=|.|++..++. ...+.++.-+++++++...++. .-+...++|++|.+|.
T Consensus 1 kIl~~Cg~G~sTS~~~~ki~~~~~~~~~~~~v~~~~~~~--------~~~~~~~~Diil~~Pq 55 (96)
T cd05564 1 KILLVCSAGMSTSILVKKMKKAAEKRGIDAEIEAVPESE--------LEEYIDDADVVLLGPQ 55 (96)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHHCCCceEEEEecHHH--------HHHhcCCCCEEEEChh
Confidence 4778889999998653 3334455558887776666542 1133567899998884
No 105
>cd06062 H2MP_MemB-H2up Endopeptidases belonging to membrane-bound hydrogenases group. These hydrogenases transfer electrons from H2 to a cytochrome that is bound to a membrane-located complex coupling electron transfer to transmembrane proton translocation. Endopeptidase HybD from E. coli is well studied in this group. Maturation of [NiFe] hydrogenases include proteolytic processing of large subunit, assembly with other subunits, and formation of the nickel metallocenter. Hydrogenase maturation endopeptidase (HybD) cleaves a short C-terminal peptide after a His or an Arg residue in the large subunit (pre-HybC) of hydrogenase 2 (hyb operon) in E. coli. This cleavage is nickel dependent. A variety of endopeptidases belong to this group that are similar in function and sequence homology. They include such proteins as HynC, HoxM, and HupD.
Probab=26.59 E-value=1.1e+02 Score=26.36 Aligned_cols=48 Identities=17% Similarity=0.203 Sum_probs=33.8
Q ss_pred CCCcHHHHHHHHHHHHHcCCCeeEEEEEecCcccCCcHHHHHHHHhcCceee-ccc
Q 018224 38 DGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIRKNKVCLK-GGL 92 (359)
Q Consensus 38 DGIGpEV~~~a~~vl~~~~~~ie~~~~~~g~~~~~lp~et~~~~~~~da~l~-G~~ 92 (359)
||+|+.|.+...+. ...+-+++.++.|. .+.+.++.++++|.+++ -++
T Consensus 14 DG~G~~va~~L~~~---~~~~~~v~vi~~~~----~~~~l~~~l~~~d~viiVDA~ 62 (146)
T cd06062 14 EGIGVHAVERLEEN---YSFPENVELIDGGT----LGLELLPYIEEADRLIIVDAV 62 (146)
T ss_pred CcHHHHHHHHHHHh---cCCCCCeEEEECCC----CHHHHHHHHhcCCEEEEEEcc
Confidence 89999988766432 14455566677764 58888888989887766 454
No 106
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=26.51 E-value=2e+02 Score=26.01 Aligned_cols=19 Identities=16% Similarity=0.389 Sum_probs=12.9
Q ss_pred HHHHHHhCCCCccEEEeCC
Q 018224 228 CCMQLVSKPEQFDVMVTPN 246 (359)
Q Consensus 228 ~~~~Lv~~P~~fdViv~~N 246 (359)
++.++++....+|.|+|.|
T Consensus 166 ~~~~~l~~~~~~~aii~~~ 184 (265)
T cd06290 166 AVEELLQRGPDFTAIFAAN 184 (265)
T ss_pred HHHHHHcCCCCCCEEEEcC
Confidence 4556665434689999875
No 107
>PRK11175 universal stress protein UspE; Provisional
Probab=26.35 E-value=4.7e+02 Score=24.58 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEE
Q 018224 169 SERIAKYAFEYAYLNYRKKVTAVH 192 (359)
Q Consensus 169 ~eRiar~AFe~A~~r~~~~Vt~v~ 192 (359)
.++.+++|+++|+.....+++++|
T Consensus 172 ~~~al~~a~~la~~~~~a~l~ll~ 195 (305)
T PRK11175 172 NEKLVEEAIDLAEQLNHAEVHLVN 195 (305)
T ss_pred HHHHHHHHHHHHhhCcCCceEEEE
Confidence 478999999999876235788886
No 108
>cd00518 H2MP Hydrogenase specific C-terminal endopeptidases, also called Hydrogen Maturation Proteases (H2MP). These enzymes belong to the peptidase family M52. Maturation of [FeNi] hydrogenases includes formation of the nickel metallocenter, proteolytic processing and assembly with other subunits. Hydrogenase maturation endopeptidases are responsible for the proteolytic processing, liberating a short C-terminal peptide by cleaving after a His or an Arg residue, e.g., HycI (E. coli) is involved in processing of HypE, the large subunit of hydrogenase 3. This cleavage is nickel dependent. This CD also includes such hydrogenase-processing proteins as HydD, HupW, and HoxW, as well as, proteins of the F420-reducing hydrogenase of methanogens (e.g., FrcD). Also included, is the Pyrococcus furiosus FrxA protein, a bifunctional endopeptidase/ sulfhydrogenase found in NADP-reducing hyperthermophiles.The Pyrococcus FrxA is not related to those found in Helicobacter pylori.
Probab=26.10 E-value=81 Score=26.89 Aligned_cols=47 Identities=21% Similarity=0.304 Sum_probs=32.7
Q ss_pred CCCcHHHHHHHHHHHHHcCCCeeEEEEEecCcccCCcHHHHHHHHhcCceee-ccc
Q 018224 38 DGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIRKNKVCLK-GGL 92 (359)
Q Consensus 38 DGIGpEV~~~a~~vl~~~~~~ie~~~~~~g~~~~~lp~et~~~~~~~da~l~-G~~ 92 (359)
||+|+.|++.-.+. ..+-+++.++.|. .+.+.+..++++|.+++ -++
T Consensus 13 DGvG~~v~~~L~~~----~~~~~v~~id~gt----~~~~l~~~l~~~d~viiVDA~ 60 (139)
T cd00518 13 DGFGPAVAERLEER----YLPPGVEVIDGGT----LGLELLDLLEGADRVIIVDAV 60 (139)
T ss_pred CcHHHHHHHHHHhc----CCCCCeEEEECCC----CHHHHHHHHhcCCeEEEEECc
Confidence 89999988765443 2234466667664 68888899999988766 443
No 109
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=25.40 E-value=1.6e+02 Score=23.63 Aligned_cols=55 Identities=7% Similarity=0.204 Sum_probs=40.4
Q ss_pred cceEEEEcCCCCcHHHH--HHHHHHHHHcCCCeeEEEEEecCcccCCcHHHHHHHHhcCceeecc
Q 018224 29 PRAVTLIPGDGIGPLVT--NAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIRKNKVCLKGG 91 (359)
Q Consensus 29 ~~~I~vi~GDGIGpEV~--~~a~~vl~~~~~~ie~~~~~~g~~~~~lp~et~~~~~~~da~l~G~ 91 (359)
+++|.+.=|.|+|-..+ ....++++..|++++.+...++. ++. .++++|+++.++
T Consensus 2 k~kILvvCgsG~~TS~m~~~ki~~~l~~~gi~~~v~~~~~~e----~~~----~~~~~D~iv~t~ 58 (94)
T PRK10310 2 KRKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNE----IET----YMDGVHLICTTA 58 (94)
T ss_pred CCeEEEECCCchhHHHHHHHHHHHHHHHCCCeEEEEEecHHH----Hhh----hcCCCCEEEECC
Confidence 35799999999999877 55668899899998877755542 221 235689888765
No 110
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=25.36 E-value=5.1e+02 Score=23.41 Aligned_cols=32 Identities=16% Similarity=0.327 Sum_probs=19.5
Q ss_pred eEEEEcCC---CCcHHHHHHHHHHHHHcCCCeeEE
Q 018224 31 AVTLIPGD---GIGPLVTNAVEQVMEAMHAPIYFE 62 (359)
Q Consensus 31 ~I~vi~GD---GIGpEV~~~a~~vl~~~~~~ie~~ 62 (359)
||++|..| .--.+++....+.+++.|..+.+.
T Consensus 1 ~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~ 35 (273)
T cd06310 1 KIALVPKGTTSDFWQAVKAGAEAAAKELGVKVTFQ 35 (273)
T ss_pred CeEEEecCCCcHHHHHHHHHHHHHHHHcCCEEEEe
Confidence 57777654 123456666667777777666654
No 111
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=24.95 E-value=2.6e+02 Score=22.82 Aligned_cols=56 Identities=13% Similarity=0.021 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEE-EcCCchhhchHHHHHHHHHHHhhCCceeeceeeHhH
Q 018224 169 SERIAKYAFEYAYLNYRKKVTAV-HKANIMKLADGLFLESCREVATKYPSIKYNEIIVDN 227 (359)
Q Consensus 169 ~eRiar~AFe~A~~r~~~~Vt~v-~KaNvl~~tdglf~~~~~eva~eypdI~~~~~~vD~ 227 (359)
..+-.+-.|.-+.+++ +.|++. ++.+- . .+.....++++++++|+.|++....+|.
T Consensus 7 ~~~~~~~~~~~~l~~~-~~vvv~f~a~wC-~-~C~~~~~~l~~la~~~~~i~~~~vd~d~ 63 (113)
T cd02975 7 DRKALKEEFFKEMKNP-VDLVVFSSKEGC-Q-YCEVTKQLLEELSELSDKLKLEIYDFDE 63 (113)
T ss_pred HHHHHHHHHHHHhCCC-eEEEEEeCCCCC-C-ChHHHHHHHHHHHHhcCceEEEEEeCCc
Confidence 3444555555555553 334333 44442 2 4677788999998888888887777763
No 112
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=24.38 E-value=4e+02 Score=23.80 Aligned_cols=75 Identities=8% Similarity=-0.024 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHhhC-Cce---ee---ceeeHhHHHHHHHhCCCCccEEEe
Q 018224 172 IAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKY-PSI---KY---NEIIVDNCCMQLVSKPEQFDVMVT 244 (359)
Q Consensus 172 iar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~ey-pdI---~~---~~~~vD~~~~~Lv~~P~~fdViv~ 244 (359)
..+.+.++..++|.++|.++.-.- -......+.+-|.+..+++ .++ .. +.......+.+++++....|+|+|
T Consensus 102 ~g~~~~~~l~~~g~~~i~~i~~~~-~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~ 180 (266)
T cd06278 102 AGRLAAELLLAKGCRRIAFIGGPA-DTSTSRERERGFRDALAAAGVPVVVEEAGDYSYEGGYEAARRLLASRPRPDAIFC 180 (266)
T ss_pred HHHHHHHHHHHCCCceEEEEcCCC-cccchHHHHHHHHHHHHHcCCChhhhccCCCCHHHHHHHHHHHHhcCCCCCEEEE
Confidence 444566666667888888885321 1111122333344443332 111 11 111122344566654346899999
Q ss_pred CCc
Q 018224 245 PNL 247 (359)
Q Consensus 245 ~Nl 247 (359)
.|-
T Consensus 181 ~~~ 183 (266)
T cd06278 181 AND 183 (266)
T ss_pred cCc
Confidence 863
No 113
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=24.03 E-value=2.6e+02 Score=29.22 Aligned_cols=100 Identities=16% Similarity=0.180 Sum_probs=62.9
Q ss_pred cHHHHHHHHhcCceeec--cccCCCCCCcccchHHHHhhcCcEEEEEEeecCCCCCC-C-cccccEEEEecCCcceEecc
Q 018224 74 PQQVLDSIRKNKVCLKG--GLKTPVGGGVSSLNVQLRKELDLYAALVNCFNLPGLPT-R-HQNVDIVVIRENTEGEYSGL 149 (359)
Q Consensus 74 p~et~~~~~~~da~l~G--~~~~p~~~~~~s~~~~LR~~ldlyanvRP~~~~pg~~~-~-~~~iDivivREnteG~Y~g~ 149 (359)
|++..+.+++...++.+ |.-.|.. ..+..+|+.+.-|-.+ |... |.+=+ . -.+.|.+++ |.|.|.
T Consensus 136 ~e~~~~~l~~~G~~fl~~a~~~~PAd----k~v~~lR~v~~t~n~l-PLi~-~SImSKKlAag~~~~vl-----dV~~G~ 204 (434)
T PRK06078 136 QEDFIKLVNENKVAVIGQSGNLTPAD----KKLYALRDVTATVNSI-PLIA-SSIMSKKIAAGADAIVL-----DVKTGA 204 (434)
T ss_pred HHHHHHHHHHhCcEEEccCCCcChhh----hhhHHHhccccccChH-Hhhh-hHhhhhhhhcCCCeEEE-----eeecCC
Confidence 56667777888888887 3334432 2467899988852222 5432 11100 0 135667776 667665
Q ss_pred ceeeeCCEEEEEEeecHHHHHHHHHHHHHHHHhcCCCcEEEEEcC
Q 018224 150 EHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKA 194 (359)
Q Consensus 150 ~~~~~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~Ka 194 (359)
+-. .=|.+..+.+++.=-++.++.|++.+.+++..
T Consensus 205 gAf----------m~~~~~a~~lA~~l~~lG~~~g~~~~a~lt~~ 239 (434)
T PRK06078 205 GAF----------MKTVEDAEELAHAMVRIGNNVGRNTMAVISDM 239 (434)
T ss_pred CCC----------CCCHHHHHHHHHHHHHHHHhcCCeEEEEECCC
Confidence 421 23788899999998888888887777777654
No 114
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=23.95 E-value=2.2e+02 Score=24.70 Aligned_cols=52 Identities=10% Similarity=0.098 Sum_probs=37.0
Q ss_pred cceEEEEcCCC--CcHHHHHHHHHHHHHcCCCeeEEEEEecCcccCCcHHHHHHHHhcCceee
Q 018224 29 PRAVTLIPGDG--IGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIRKNKVCLK 89 (359)
Q Consensus 29 ~~~I~vi~GDG--IGpEV~~~a~~vl~~~~~~ie~~~~~~g~~~~~lp~et~~~~~~~da~l~ 89 (359)
+.-++.+.||+ +|..++... |+..| |+.+++|.. .-|++.++++++.++-+.
T Consensus 3 ~vvigtv~~D~HdiGk~iv~~~---l~~~G----feVi~LG~~--v~~e~~v~aa~~~~adiV 56 (134)
T TIGR01501 3 TIVLGVIGSDCHAVGNKILDHA---FTNAG----FNVVNLGVL--SPQEEFIKAAIETKADAI 56 (134)
T ss_pred eEEEEEecCChhhHhHHHHHHH---HHHCC----CEEEECCCC--CCHHHHHHHHHHcCCCEE
Confidence 45678899998 888777655 67666 556778764 347888898888655433
No 115
>PF08740 BCS1_N: BCS1 N terminal; InterPro: IPR014851 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. This domain is found at the N terminus of the mitochondrial BSC1 subfamily, belonging to the AAA ATPase family. At2g21640 and BCS1 are both highly stress responsive genes which encode mitochondrial proteins. The promoter of BCS1 was not responsive to H2O2 or rotenone, but highly responsive to salicylic acid (SA). The SA dependent pathway represented by BCS1 is one of at least three distinctive pathways to regulate mitochondrial stress response at a transcriptional level []. The BCS1 product is a mitochondrial protein required for the assembly of respiratory complex III []. BCS1, a component of the inner membrane of mitochondria, belongs to the group of proteins with internal, noncleavable import signals. It has a transmembrane domain (amino acid residues 51 to 68), a presequence type helix (residues 69 to 83), and an import auxiliary region (residues 84 to 126) [].
Probab=23.51 E-value=2.3e+02 Score=25.06 Aligned_cols=78 Identities=14% Similarity=-0.007 Sum_probs=49.4
Q ss_pred EEEeecCCCCCCC---cccccEEEEecCCcceEeccceeeeCCEEEEEEeecHHHHHHHHHHHHHHHHhcCCCcEEEEEc
Q 018224 117 LVNCFNLPGLPTR---HQNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHK 193 (359)
Q Consensus 117 vRP~~~~pg~~~~---~~~iDivivREnteG~Y~g~~~~~~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~K 193 (359)
-+|+...|+..+. +++--|.|-|+.....|........+...+.+---++.-++++++.|=+++.++.+.+ |+|+.
T Consensus 87 ~~~~~~~P~~G~h~F~y~G~~~~~~R~~~~~~~~~~~~~~~e~l~l~~lg~s~~~l~~ll~ear~~~~~~~~~~-t~Iy~ 165 (187)
T PF08740_consen 87 KKPIRFTPSPGTHWFWYKGRWFWFSRQRESNSYNSWTGAPDETLTLSCLGRSPKPLKDLLEEAREYYLKKQKGK-TTIYR 165 (187)
T ss_pred cCCeEEEeCCCCEEEEECCEEEEEEEEeccccccccCCCCceEEEEEEecCCHHHHHHHHHHHHHHHHHhcCCc-EEEEe
Confidence 5777777776543 3788888989885545554321111122333333457888999999999998875555 55655
Q ss_pred CC
Q 018224 194 AN 195 (359)
Q Consensus 194 aN 195 (359)
+.
T Consensus 166 ~~ 167 (187)
T PF08740_consen 166 AD 167 (187)
T ss_pred CC
Confidence 54
No 116
>PRK10466 hybD hydrogenase 2 maturation endopeptidase; Provisional
Probab=23.42 E-value=1.4e+02 Score=26.43 Aligned_cols=48 Identities=19% Similarity=0.269 Sum_probs=33.5
Q ss_pred CCCcHHHHHHHHHHHHHcCCCeeEEEEEecCcccCCcHHHHHHHHhcCceee-ccc
Q 018224 38 DGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIRKNKVCLK-GGL 92 (359)
Q Consensus 38 DGIGpEV~~~a~~vl~~~~~~ie~~~~~~g~~~~~lp~et~~~~~~~da~l~-G~~ 92 (359)
||+|++|+++..+. ...+-+++.++.|. .+.+.++.+.++|.+++ -++
T Consensus 16 DGvG~~va~~L~~~---~~~~~~v~vid~gt----~~~~ll~~l~~~d~vIiVDA~ 64 (164)
T PRK10466 16 EAIGVRIVEALEQR---YILPDYVEILDGGT----AGMELLGDMANRDHLIIADAI 64 (164)
T ss_pred CcHHHHHHHHHHHh---cCCCCCeEEEeccc----cHHHHHHHHhCCCEEEEEEec
Confidence 78999988765432 24444566677774 68888888888887765 554
No 117
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=23.33 E-value=6e+02 Score=25.29 Aligned_cols=79 Identities=18% Similarity=0.186 Sum_probs=39.7
Q ss_pred HHHHHHHhcCCCcEEEEEcCC-----chhhc----h----HHHH-H-HHHHHHhhCCceeeceeeHh---HHHHHHHhCC
Q 018224 175 YAFEYAYLNYRKKVTAVHKAN-----IMKLA----D----GLFL-E-SCREVATKYPSIKYNEIIVD---NCCMQLVSKP 236 (359)
Q Consensus 175 ~AFe~A~~r~~~~Vt~v~KaN-----vl~~t----d----glf~-~-~~~eva~eypdI~~~~~~vD---~~~~~Lv~~P 236 (359)
.|..+|+. |-.+++++|... +-+.. + |+.+ + ..+.+.+-.|+|+++....| .-...++
T Consensus 39 va~~La~a-Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~~~~~~~~~~~~~~--- 114 (339)
T PRK07688 39 NAEMLVRA-GVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAIVQDVTAEELEELV--- 114 (339)
T ss_pred HHHHHHHc-CCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHH---
Confidence 45556655 778999999863 22210 0 1111 1 12333444688877665422 1223444
Q ss_pred CCccEEEeC--Ccchh-hHHHhhh
Q 018224 237 EQFDVMVTP--NLYGN-LVSNTAA 257 (359)
Q Consensus 237 ~~fdViv~~--NlfGD-ILSDlaa 257 (359)
.+||+||.. |.--- +|+|.|.
T Consensus 115 ~~~DlVid~~Dn~~~r~~ln~~~~ 138 (339)
T PRK07688 115 TGVDLIIDATDNFETRFIVNDAAQ 138 (339)
T ss_pred cCCCEEEEcCCCHHHHHHHHHHHH
Confidence 358966643 44222 3555553
No 118
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=23.00 E-value=2.4e+02 Score=25.37 Aligned_cols=56 Identities=21% Similarity=0.367 Sum_probs=38.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEecCcccCCcHHHHHHHHh-----cCceeecc
Q 018224 32 VTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIRK-----NKVCLKGG 91 (359)
Q Consensus 32 I~vi~GDGIGpEV~~~a~~vl~~~~~~ie~~~~~~g~~~~~lp~et~~~~~~-----~da~l~G~ 91 (359)
|++|-|-.-=-++++.+.++|+..|++.|....-+. ..|++..+-+++ .++++-++
T Consensus 1 V~IimGS~SD~~~~~~a~~~L~~~gi~~dv~V~SaH----Rtp~~~~~~~~~a~~~g~~viIa~A 61 (156)
T TIGR01162 1 VGIIMGSDSDLPTMKKAADILEEFGIPYELRVVSAH----RTPELMLEYAKEAEERGIKVIIAGA 61 (156)
T ss_pred CEEEECcHhhHHHHHHHHHHHHHcCCCeEEEEECcc----cCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 456666655578999999999999988554443333 468888777654 46665555
No 119
>PF03469 XH: XH domain; InterPro: IPR005379 The XH (rice gene X Homology) domain is found in a family of plant proteins including Oryza sativa (Rice) Q9SBW2 from SWISSPROT. The molecular function of these proteins is unknown, however these proteins usually contain an XS domain (IPR005380 from INTERPRO) that is also found in the PTGS protein SGS3. As the XS and XH domains are fused in most of these proteins, these two domains may interact. The XH domain is between 124 and 145 residues in length and contains a conserved glutamate residue that may be functionally important [].
Probab=22.52 E-value=1.8e+02 Score=25.49 Aligned_cols=41 Identities=17% Similarity=0.421 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHH-------cCcccCCCC-----CCCCcHHHHHHHHHHhc
Q 018224 318 SFADRLETAVKRVIS-------EEKYRTKDL-----GGGCTTQQIVDAVIANL 358 (359)
Q Consensus 318 ~~A~~i~~Av~~~l~-------~g~~~T~Dl-----gg~~~T~e~~~av~~~l 358 (359)
+.++-+.+||..+|. +|.+.++.| |-.+|..|+++.|++++
T Consensus 73 e~Geevy~aV~~Al~E~nEyN~sGry~v~eLWN~ke~RkAtl~E~v~~i~~q~ 125 (132)
T PF03469_consen 73 EWGEEVYNAVTKALLEINEYNPSGRYPVPELWNFKEGRKATLKEVVQYILKQW 125 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCccCCccccccccCHHHHHHHHHHHH
Confidence 445556666666653 577778877 67899999999998876
No 120
>TIGR00072 hydrog_prot hydrogenase maturation protease. HycI and HoxM are well-characterized as responsible for C-terminal protease activity on their respective hydrogenase large chains. A large number of homologous proteins appear responsible for the maturation of various forms of hydrogenase.
Probab=22.39 E-value=1.4e+02 Score=25.61 Aligned_cols=48 Identities=23% Similarity=0.338 Sum_probs=33.8
Q ss_pred CCCcHHHHHHHHHHHHHcCCCeeEEEEEecCcccCCcHHHHHHHHhcCceee-ccc
Q 018224 38 DGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIRKNKVCLK-GGL 92 (359)
Q Consensus 38 DGIGpEV~~~a~~vl~~~~~~ie~~~~~~g~~~~~lp~et~~~~~~~da~l~-G~~ 92 (359)
||+|+.+.++-.+.. ..+-+|+.++.|. .+.+.+..++++|.+++ -++
T Consensus 13 Dg~G~~v~~~L~~~~---~~~~~v~~id~g~----~~~~l~~~l~~~d~viiVDA~ 61 (145)
T TIGR00072 13 DGFGPRVAERLEERY---EFPPGVEVLDGGT----LGLELLDAIEGADRVIVVDAV 61 (145)
T ss_pred CcHHHHHHHHHHHhc---CCCCCeEEEECCC----CHHHHHHHHhCCCEEEEEEcc
Confidence 899999888765432 2234566677764 68888899999988766 444
No 121
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=22.26 E-value=2.9e+02 Score=24.99 Aligned_cols=60 Identities=22% Similarity=0.171 Sum_probs=33.3
Q ss_pred HHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHhh--CCceeeceeeHhHHHHHHHhCCCCccEEEeCC
Q 018224 175 YAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATK--YPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPN 246 (359)
Q Consensus 175 ~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~e--ypdI~~~~~~vD~~~~~Lv~~P~~fdViv~~N 246 (359)
.++.+|++.+..+||.+|+.--+ .+.+++.+++ .+++++... |.. .+-. ++.||+|++.+
T Consensus 59 ~al~la~~~~~~~V~giD~s~~~-------l~~A~~~~~~~~l~~i~~~~~--d~~--~~~~-~~~fDlV~~~~ 120 (187)
T PRK00107 59 PGIPLAIARPELKVTLVDSLGKK-------IAFLREVAAELGLKNVTVVHG--RAE--EFGQ-EEKFDVVTSRA 120 (187)
T ss_pred HHHHHHHHCCCCeEEEEeCcHHH-------HHHHHHHHHHcCCCCEEEEec--cHh--hCCC-CCCccEEEEcc
Confidence 45666665555789999876543 2233333222 334544443 332 2222 56899999865
No 122
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=22.20 E-value=4.6e+02 Score=23.74 Aligned_cols=34 Identities=21% Similarity=0.325 Sum_probs=21.4
Q ss_pred CCcEEEEEcCCchhhchHHHHHHHHHHHhhCCceee
Q 018224 185 RKKVTAVHKANIMKLADGLFLESCREVATKYPSIKY 220 (359)
Q Consensus 185 ~~~Vt~v~KaNvl~~tdglf~~~~~eva~eypdI~~ 220 (359)
+++|++++=.. ...+-.|++.+++.+++++++.+
T Consensus 131 ~~~v~l~~~~r--~~~~~~~~~~l~~l~~~~~~~~~ 164 (232)
T cd06212 131 DRPVRFFYGAR--TARDLFYLEEIAALGEKIPDFTF 164 (232)
T ss_pred CCcEEEEEecc--chHHhccHHHHHHHHHhCCCEEE
Confidence 45688776322 12345667888888777887655
No 123
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=21.98 E-value=5.7e+02 Score=22.80 Aligned_cols=73 Identities=11% Similarity=0.108 Sum_probs=34.1
Q ss_pred HHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHhhCC----c--eeeceeeHh---HHHHHHHhCCCCccEEE
Q 018224 173 AKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYP----S--IKYNEIIVD---NCCMQLVSKPEQFDVMV 243 (359)
Q Consensus 173 ar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~eyp----d--I~~~~~~vD---~~~~~Lv~~P~~fdViv 243 (359)
.+.|.++..++|.+++.+++=..-- .....+.+-|.+..++++ . +.......+ ..+.++++.....|.|+
T Consensus 103 g~~~~~~l~~~g~~~i~~l~~~~~~-~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~ 181 (267)
T cd06284 103 ARLAVDHLISLGHRRIALITGPRDN-PLARDRLEGYRQALAEAGLPADEELIQEGDFSLESGYAAARRLLALPDRPTAIF 181 (267)
T ss_pred HHHHHHHHHHcCCceEEEEcCCccc-hhHHHHHHHHHHHHHHcCCCCCcceEEeCCCChHHHHHHHHHHHhCCCCCcEEE
Confidence 3444455555677788877421111 112234445555544443 1 111111122 22334554444689888
Q ss_pred eCC
Q 018224 244 TPN 246 (359)
Q Consensus 244 ~~N 246 (359)
|.|
T Consensus 182 ~~~ 184 (267)
T cd06284 182 CFS 184 (267)
T ss_pred EcC
Confidence 875
No 124
>cd01544 PBP1_GalR Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalR is a dimeric protein like GalS and is exclusively involved in the regulation of galactose permease, the low-affinity galactose transporter. GalS is involved in regulating expression of the high-affinity galactose transporter encoded by the mgl operon. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are structurally homologous to the periplasmic sugar bindi
Probab=21.72 E-value=4.3e+02 Score=24.11 Aligned_cols=90 Identities=9% Similarity=0.052 Sum_probs=41.8
Q ss_pred HHHHHHHHHhcCCCcEEEEEcCCchh----hchHHHHHHHHHHHhhCC--ce--eec-eeeHh---HHHHHHHhCC--CC
Q 018224 173 AKYAFEYAYLNYRKKVTAVHKANIMK----LADGLFLESCREVATKYP--SI--KYN-EIIVD---NCCMQLVSKP--EQ 238 (359)
Q Consensus 173 ar~AFe~A~~r~~~~Vt~v~KaNvl~----~tdglf~~~~~eva~eyp--dI--~~~-~~~vD---~~~~~Lv~~P--~~ 238 (359)
++.+.++..++|.+++.++.-.+-.. .....-.+-|.+..++++ .. .+. ..-.+ ..+.+++++. ..
T Consensus 100 ~~~~~~~l~~~g~~~i~~i~~~~~~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 179 (270)
T cd01544 100 VEKALDYLLELGHTRIGFIGGEEKTTDGHEYIEDPRETAFREYMKEKGLYDPELIYIGDFTVESGYQLMKEALKSLGDNL 179 (270)
T ss_pred HHHHHHHHHHcCCCcEEEECCCcccccccchhhhHHHHHHHHHHHHcCCCChheEeeCCCCHHHHHHHHHHHHhccCCCC
Confidence 44566666667888888775433210 011111233444433433 11 111 11112 2344566543 56
Q ss_pred ccEEEeCCcchhhHHHhhhhhcCCCCc
Q 018224 239 FDVMVTPNLYGNLVSNTAAGIAGGTGV 265 (359)
Q Consensus 239 fdViv~~NlfGDILSDlaa~l~GglGl 265 (359)
+|+|+|.| |.+.-.+....-..|+
T Consensus 180 ~~ai~~~~---d~~a~g~~~~l~~~g~ 203 (270)
T cd01544 180 PTAFFIAS---DPMAIGALRALQEAGI 203 (270)
T ss_pred CCEEEEcC---cHHHHHHHHHHHHcCC
Confidence 89999976 5554433333333444
No 125
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.
Probab=21.71 E-value=4.4e+02 Score=23.92 Aligned_cols=28 Identities=0% Similarity=-0.058 Sum_probs=17.8
Q ss_pred CcHHHHHHHHHHHHHcCC----CeeEEEEEec
Q 018224 40 IGPLVTNAVEQVMEAMHA----PIYFEKYEVH 67 (359)
Q Consensus 40 IGpEV~~~a~~vl~~~~~----~ie~~~~~~g 67 (359)
--.++.....+.+++.|. ++++...+..
T Consensus 12 ~~~~~~~gi~~~~~~~g~~~g~~v~l~~~~~~ 43 (281)
T cd06325 12 ALDAARKGFKDGLKEAGYKEGKNVKIDYQNAQ 43 (281)
T ss_pred chHHHHHHHHHHHHHhCccCCceEEEEEecCC
Confidence 345677777777777653 5666665543
No 126
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=21.59 E-value=6.1e+02 Score=22.93 Aligned_cols=79 Identities=18% Similarity=0.182 Sum_probs=42.3
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHhhCCceee-ceee-----Hh---HHHHHHHhC
Q 018224 165 TKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKY-NEII-----VD---NCCMQLVSK 235 (359)
Q Consensus 165 Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~eypdI~~-~~~~-----vD---~~~~~Lv~~ 235 (359)
.....+..+++..+.+. |+++|-++.=.+. . ..-...+-+.+..+++|+++. .... .+ ..+.++++.
T Consensus 103 ~~~~g~~~~~~l~~~~~--g~~~i~~i~g~~~-~-~~~~R~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 178 (271)
T cd06321 103 NVQAGEISCQYLADRLG--GKGNVAILNGPPV-S-AVLDRVAGCKAALAKYPGIKLLSDDQNGKGSRDGGLRVMQGLLTR 178 (271)
T ss_pred hHHHHHHHHHHHHHHhC--CCceEEEEeCCCC-c-hHHHHHHHHHHHHHhCCCcEEEeeecCCCCChhhHHHHHHHHHHh
Confidence 45566666666665532 5677777742222 1 222334567777677776632 1111 11 133445544
Q ss_pred CCCccEEEeCCc
Q 018224 236 PEQFDVMVTPNL 247 (359)
Q Consensus 236 P~~fdViv~~Nl 247 (359)
....|.|+|.|-
T Consensus 179 ~~~~~ai~~~~d 190 (271)
T cd06321 179 FPKLDGVFAIND 190 (271)
T ss_pred CCCCCEEEECCc
Confidence 446799999764
No 127
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=21.39 E-value=5.5e+02 Score=22.95 Aligned_cols=75 Identities=13% Similarity=-0.020 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHhhCC-c-----eeecee---eHhHHHHHHHhCCCCccEE
Q 018224 172 IAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYP-S-----IKYNEI---IVDNCCMQLVSKPEQFDVM 242 (359)
Q Consensus 172 iar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~eyp-d-----I~~~~~---~vD~~~~~Lv~~P~~fdVi 242 (359)
..+.|.++-.+.|.++|.++.-..-.. ......+-|.+..+++. . +..... ..-....++++....+|+|
T Consensus 104 ~~~~~~~~l~~~g~~~i~~l~~~~~~~-~~~~r~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 182 (268)
T cd06289 104 GARLATEHLISLGHRRIAFIGGLEDSS-TRRERLAGYRAALAEAGLPFDSELVVEGPPSRQGGAEAVAQLLDLPPRPTAI 182 (268)
T ss_pred HHHHHHHHHHHCCCCCEEEecCCcccc-chHHHHHHHHHHHHHcCCCCCchhEEecCcchhhHHHHHHHHHcCCCCCCEE
Confidence 344555555666778888774221111 22233344444433331 1 111111 1123344555554478999
Q ss_pred EeCCc
Q 018224 243 VTPNL 247 (359)
Q Consensus 243 v~~Nl 247 (359)
+|.|-
T Consensus 183 ~~~~~ 187 (268)
T cd06289 183 VCFND 187 (268)
T ss_pred EEcCc
Confidence 99874
No 128
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=21.33 E-value=5.7e+02 Score=22.49 Aligned_cols=73 Identities=15% Similarity=0.095 Sum_probs=35.3
Q ss_pred HHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHhhCC-ceeeceee--------HhHHHHHHHhCCCCccEEE
Q 018224 173 AKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYP-SIKYNEII--------VDNCCMQLVSKPEQFDVMV 243 (359)
Q Consensus 173 ar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~eyp-dI~~~~~~--------vD~~~~~Lv~~P~~fdViv 243 (359)
.+.+.++..++|+++|.++.=.+-.. ......+.+++..+++. +++..... .-..+.++++.....|+|+
T Consensus 104 g~~~~~~l~~~g~~~i~~i~~~~~~~-~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 182 (264)
T cd06267 104 AYLAVEHLIELGHRRIAFIGGPPDLS-TARERLEGYREALEEAGIPLDEELIVEGDFSEESGYEAARELLASGERPTAIF 182 (264)
T ss_pred HHHHHHHHHHCCCceEEEecCCCccc-hHHHHHHHHHHHHHHcCCCCCcceEEecccchhhHHHHHHHHHhcCCCCcEEE
Confidence 34444555555778888774332211 12223345555544432 22211111 1123345564544789999
Q ss_pred eCC
Q 018224 244 TPN 246 (359)
Q Consensus 244 ~~N 246 (359)
+.|
T Consensus 183 ~~~ 185 (264)
T cd06267 183 AAN 185 (264)
T ss_pred EcC
Confidence 874
No 129
>PRK09701 D-allose transporter subunit; Provisional
Probab=21.33 E-value=6.6e+02 Score=23.81 Aligned_cols=62 Identities=10% Similarity=0.105 Sum_probs=33.9
Q ss_pred ceEEEEcCC---CCcHHHHHHHHHHHHHcCCCeeEEEEEecCcccCCcHHHHHHH--HhcCceeeccc
Q 018224 30 RAVTLIPGD---GIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSI--RKNKVCLKGGL 92 (359)
Q Consensus 30 ~~I~vi~GD---GIGpEV~~~a~~vl~~~~~~ie~~~~~~g~~~~~lp~et~~~~--~~~da~l~G~~ 92 (359)
.+|+++.-+ .--.++...+.+.++..|..+.+...+...+. .-..+.++.+ ++.|+++.-+.
T Consensus 25 ~~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~v~~~~~~~~~~~-~~~~~~i~~l~~~~vDgiIi~~~ 91 (311)
T PRK09701 25 AEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFASPSEGDF-QSQLQLFEDLSNKNYKGIAFAPL 91 (311)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHHHcCCeEEEecCCCCCCH-HHHHHHHHHHHHcCCCEEEEeCC
Confidence 478888643 34456777777777777776665422221110 0112333333 34788877664
No 130
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=21.17 E-value=4.6e+02 Score=25.06 Aligned_cols=43 Identities=23% Similarity=0.136 Sum_probs=24.8
Q ss_pred ccccCCCCCCCCcceEEEEcCC---CCcHHHHHHHHHHHHHcCCCe
Q 018224 17 SVTYMPRPGDGSPRAVTLIPGD---GIGPLVTNAVEQVMEAMHAPI 59 (359)
Q Consensus 17 ~~~~~~~~~~~~~~~I~vi~GD---GIGpEV~~~a~~vl~~~~~~i 59 (359)
|+......+.+++.+|+++-.| .--.+++....+.++..|..+
T Consensus 47 pn~~ar~l~~~~~~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~ 92 (343)
T PRK10727 47 PNANARALAQQSTETVGLVVGDVSDPFFGAMVKAVEQVAYHTGNFL 92 (343)
T ss_pred CCHHHHhhhhCCCCeEEEEeCCCCcchHHHHHHHHHHHHHHcCCEE
Confidence 4444444455567889988653 233455566666666666544
No 131
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=21.17 E-value=2.5e+02 Score=25.48 Aligned_cols=78 Identities=12% Similarity=0.111 Sum_probs=50.6
Q ss_pred eEEEEcC-CCCcHHHHHHHHHHHHHcCCCeeEEEEEe----cCc-----c----cCCc----HHHHHHHHhcCceeeccc
Q 018224 31 AVTLIPG-DGIGPLVTNAVEQVMEAMHAPIYFEKYEV----HGD-----M----KRVP----QQVLDSIRKNKVCLKGGL 92 (359)
Q Consensus 31 ~I~vi~G-DGIGpEV~~~a~~vl~~~~~~ie~~~~~~----g~~-----~----~~lp----~et~~~~~~~da~l~G~~ 92 (359)
.|...|= +|--..+.+++++-++..|..++...+.- +.. . ..++ ++.++.+.++|++++|.-
T Consensus 5 ~I~gs~r~~G~t~~l~~~~~~g~~~~G~E~~~i~v~~~~i~~c~~c~~c~~~~~c~~~dD~~~~i~~~l~~aD~iI~gsP 84 (207)
T COG0655 5 GINGSPRSNGNTAKLAEAVLEGAEEAGAEVEIIRLPEKNIKPCTGCFACWKKKPCVIKDDDMNEIYEKLLEADGIIFGSP 84 (207)
T ss_pred EEEecCCCCCcHHHHHHHHHHHHHHcCCEEEEEEecCCCcccchHHHhhhccCCCCCCcccHHHHHHHHHHCCEEEEeCC
Confidence 3444433 88888999999999999988777655441 111 0 0334 455566999999999762
Q ss_pred cCCCCCCcccchHHHHhhcCc
Q 018224 93 KTPVGGGVSSLNVQLRKELDL 113 (359)
Q Consensus 93 ~~p~~~~~~s~~~~LR~~ldl 113 (359)
. .+.+....++.-+|=
T Consensus 85 v-----y~g~vsa~~K~fiDR 100 (207)
T COG0655 85 V-----YFGNVSAQMKAFIDR 100 (207)
T ss_pred e-----ecCCchHHHHHHHhh
Confidence 1 123445667777774
No 132
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=21.06 E-value=5.2e+02 Score=23.34 Aligned_cols=19 Identities=11% Similarity=0.251 Sum_probs=13.2
Q ss_pred HHHHHHhCCCCccEEEeCC
Q 018224 228 CCMQLVSKPEQFDVMVTPN 246 (359)
Q Consensus 228 ~~~~Lv~~P~~fdViv~~N 246 (359)
.+.++++....+|.|+|.|
T Consensus 167 ~~~~~l~~~~~~~ai~~~~ 185 (269)
T cd06293 167 AAAQLLARGDPPTAIFAAS 185 (269)
T ss_pred HHHHHHcCCCCCCEEEEcC
Confidence 4456665444689999997
No 133
>PRK08051 fre FMN reductase; Validated
Probab=20.91 E-value=5.7e+02 Score=23.36 Aligned_cols=36 Identities=14% Similarity=0.134 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCchhhchHHHHHHHHHHHhhCCceeece
Q 018224 185 RKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNE 222 (359)
Q Consensus 185 ~~~Vt~v~KaNvl~~tdglf~~~~~eva~eypdI~~~~ 222 (359)
.++|++++=+.- ..+-.|.+.+++.+++|++..+..
T Consensus 130 ~~~v~l~~g~r~--~~~~~~~~el~~l~~~~~~~~~~~ 165 (232)
T PRK08051 130 NRPITLYWGGRE--EDHLYDLDELEALALKHPNLHFVP 165 (232)
T ss_pred CCcEEEEEEecc--HHHhhhhHHHHHHHHHCCCcEEEE
Confidence 356777664332 235577888989998888765533
No 134
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=20.86 E-value=5.4e+02 Score=23.37 Aligned_cols=76 Identities=12% Similarity=-0.049 Sum_probs=37.5
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCcEEEEE-cCCchhhchHHHHHHHHHHHhhCCceeecee----eHh---HHHHHHHhCC
Q 018224 165 TKFCSERIAKYAFEYAYLNYRKKVTAVH-KANIMKLADGLFLESCREVATKYPSIKYNEI----IVD---NCCMQLVSKP 236 (359)
Q Consensus 165 Tr~~~eRiar~AFe~A~~r~~~~Vt~v~-KaNvl~~tdglf~~~~~eva~eypdI~~~~~----~vD---~~~~~Lv~~P 236 (359)
.....+.++++..+. +|++++.++. ..+.. ..-.+.+-+.+..+++ ++..+.. -.+ ..+.+++...
T Consensus 108 ~~~~g~~~~~~l~~~---~g~~~i~~i~g~~~~~--~~~~r~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~ 181 (271)
T cd06312 108 EYAAGEAAGERLAEL---KGGKNVLCVIHEPGNV--TLEDRCAGFADGLGGA-GITEEVIETGADPTEVASRIAAYLRAN 181 (271)
T ss_pred hHHHHHHHHHHHHHh---cCCCeEEEEecCCCCc--cHHHHHHHHHHHHHhc-CceeeEeecCCCHHHHHHHHHHHHHhC
Confidence 345555566655543 5677877664 12211 1223445555555555 3332211 111 2334555433
Q ss_pred CCccEEEeCC
Q 018224 237 EQFDVMVTPN 246 (359)
Q Consensus 237 ~~fdViv~~N 246 (359)
.++|.|+|.|
T Consensus 182 ~~~~aI~~~~ 191 (271)
T cd06312 182 PDVDAVLTLG 191 (271)
T ss_pred CCccEEEEeC
Confidence 3689888887
No 135
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=20.74 E-value=2.5e+02 Score=23.20 Aligned_cols=57 Identities=7% Similarity=0.064 Sum_probs=36.9
Q ss_pred ceEEEEcCCCCcHHHHH-HHHHHHHHcCCCeeEEEEEecCcccCCcHHHHHHHHhcCceeeccc
Q 018224 30 RAVTLIPGDGIGPLVTN-AVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIRKNKVCLKGGL 92 (359)
Q Consensus 30 ~~I~vi~GDGIGpEV~~-~a~~vl~~~~~~ie~~~~~~g~~~~~lp~et~~~~~~~da~l~G~~ 92 (359)
++|-++=|.|++-.++. ...++++.-|++++.+...++. +++. .....+|++|.||-
T Consensus 2 kkILlvCg~G~STSlla~k~k~~~~e~gi~~~i~a~~~~e----~~~~--~~~~~~DvIll~PQ 59 (104)
T PRK09590 2 KKALIICAAGMSSSMMAKKTTEYLKEQGKDIEVDAITATE----GEKA--IAAAEYDLYLVSPQ 59 (104)
T ss_pred cEEEEECCCchHHHHHHHHHHHHHHHCCCceEEEEecHHH----HHHh--hccCCCCEEEEChH
Confidence 46889999999888554 4455666668887776655542 1110 01235899999984
No 136
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=20.57 E-value=6e+02 Score=23.00 Aligned_cols=71 Identities=7% Similarity=-0.095 Sum_probs=34.1
Q ss_pred HHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHhhCC-cee-ece---e---e---HhHHHHHHHhCCCCccEE
Q 018224 174 KYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYP-SIK-YNE---I---I---VDNCCMQLVSKPEQFDVM 242 (359)
Q Consensus 174 r~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~eyp-dI~-~~~---~---~---vD~~~~~Lv~~P~~fdVi 242 (359)
+.|.++..++|.+++.++..... . +.....+-+++..+++. .+. ... . - --..+.+++++...+|+|
T Consensus 98 ~~~~~~l~~~g~~~i~~i~~~~~-~-~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai 175 (265)
T cd01543 98 RMAAEHFLERGFRHFAFYGLPGA-R-WSDEREEAFRQLVAEAGYECSFFYRGLSTDAQSWEEEQEELAQWLQSLPKPVGI 175 (265)
T ss_pred HHHHHHHHHCCCcEEEEEcCCCC-H-HHHHHHHHHHHHHHHcCCccccccCccccccccHHHHHHHHHHHHhcCCCCcEE
Confidence 34444555567788888753332 1 22222234444444321 111 000 0 0 112445666554468999
Q ss_pred EeCC
Q 018224 243 VTPN 246 (359)
Q Consensus 243 v~~N 246 (359)
+|.|
T Consensus 176 ~~~~ 179 (265)
T cd01543 176 FACT 179 (265)
T ss_pred EecC
Confidence 9986
No 137
>PF01547 SBP_bac_1: Bacterial extracellular solute-binding protein; InterPro: IPR006059 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins and a high affinity periplasmic solute-binding protein. In Gram-positive bacteria, which are surrounded by a single membrane and therefore have no periplasmic region, the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homologue proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute through the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition at least some solute-binding proteins function in the initiation of sensory transduction pathways. On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped into eight family clusters [], which generally correlate with the nature of the solute bound. Family 1 includes the maltose/maltodextrin-binding proteins of Enterobacteriaceae (gene malE) [] and Streptococcus pneumoniae malX; multiple oligosaccharide binding protein of Streptococcus mutans (gene msmE); Escherichia coli glycerol-3-phosphate-binding protein; Serratia marcescens iron-binding protein (gene sfuA) and the homologous proteins (gene fbp) from Haemophilus influenzae and Neisseria; and the E. coli thiamine-binding protein (gene tbpA).; GO: 0005215 transporter activity, 0006810 transport; PDB: 3CFZ_A 2THI_A 3THI_A 4THI_A 1O7T_C 1D9Y_A 1URG_A 1URS_A 1URD_B 3OMB_A ....
Probab=20.45 E-value=2.1e+02 Score=26.20 Aligned_cols=42 Identities=19% Similarity=0.298 Sum_probs=28.1
Q ss_pred HHHHHH-HHHHhhCCceeeceeeH--hHHHH---HHHhCCC-CccEEEe
Q 018224 203 LFLESC-REVATKYPSIKYNEIIV--DNCCM---QLVSKPE-QFDVMVT 244 (359)
Q Consensus 203 lf~~~~-~eva~eypdI~~~~~~v--D~~~~---~Lv~~P~-~fdViv~ 244 (359)
-|.+.+ ++..+++|+|+++...+ +.... ..+..-. .+||+.+
T Consensus 9 ~~~~~~~~~f~k~~~~i~V~~~~~~~~~~~~~~~~~~~sg~~p~Dv~~~ 57 (315)
T PF01547_consen 9 ALQELIIEEFEKEHPGIKVEIEFIPWDDYQQKLNTALASGDAPYDVIFI 57 (315)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEEEETHHHHHHHHHHHHHTTGSSESEEEE
T ss_pred HHHHHHHHHHHHHCCCcEEEEEECCCccHHHHHHHHHHcCCChhheEEe
Confidence 566666 77777789999998877 33332 1234444 4499988
No 138
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=20.43 E-value=4.2e+02 Score=20.59 Aligned_cols=69 Identities=25% Similarity=0.339 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHhhCCc-eeec------------eeeHhHHH-HHHHh---
Q 018224 172 IAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPS-IKYN------------EIIVDNCC-MQLVS--- 234 (359)
Q Consensus 172 iar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~eypd-I~~~------------~~~vD~~~-~~Lv~--- 234 (359)
++++..+. ...++|++++=+.-. .+-+|++..++.++++|+ +.+- .-+|+... .++..
T Consensus 14 ~l~~~~~~---~~~~~v~l~~~~r~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~ 88 (109)
T PF00175_consen 14 MLRYLLER---NDNRKVTLFYGARTP--EDLLFRDELEALAQEYPNRFHVVYVSSPDDGWDGFKGRVTDLLLEDLLPEKI 88 (109)
T ss_dssp HHHHHHHH---TCTSEEEEEEEESSG--GGSTTHHHHHHHHHHSTTCEEEEEETTTTSSTTSEESSHHHHHHHHHHHHHH
T ss_pred HHHHHHHh---CCCCCEEEEEEEccc--ccccchhHHHHHHhhcccccccccccccccccCCceeehhHHHHHhhccccc
Confidence 44444443 235678888754433 366889999999999987 3322 12344443 45555
Q ss_pred CCCCccEEEeC
Q 018224 235 KPEQFDVMVTP 245 (359)
Q Consensus 235 ~P~~fdViv~~ 245 (359)
++.+..|++|.
T Consensus 89 ~~~~~~v~iCG 99 (109)
T PF00175_consen 89 DPDDTHVYICG 99 (109)
T ss_dssp CTTTEEEEEEE
T ss_pred CCCCCEEEEEC
Confidence 56666787775
No 139
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=20.38 E-value=1.5e+02 Score=23.21 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 018224 166 KFCSERIAKYAFEYAYLNYRKKVTAVH 192 (359)
Q Consensus 166 r~~~eRiar~AFe~A~~r~~~~Vt~v~ 192 (359)
.+.+++.+++|+++|++. ..+|+++|
T Consensus 12 ~~~~~~al~~a~~la~~~-~~~i~~l~ 37 (140)
T PF00582_consen 12 SEESRRALRFALELAKRS-GAEITLLH 37 (140)
T ss_dssp SHHHHHHHHHHHHHHHHH-TCEEEEEE
T ss_pred CHHHHHHHHHHHHHHHhh-CCeEEEEE
Confidence 456779999999999986 46666654
No 140
>TIGR00557 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase. This model represents PdxA, an NAD+-dependent 4-hydroxythreonine 4-phosphate dehydrogenase (EC 1.1.1.262) active in pyridoxal phosphate biosynthesis.
Probab=20.33 E-value=74 Score=31.81 Aligned_cols=19 Identities=32% Similarity=0.574 Sum_probs=14.7
Q ss_pred eEEEEcCC--CCcHHHHHHHH
Q 018224 31 AVTLIPGD--GIGPLVTNAVE 49 (359)
Q Consensus 31 ~I~vi~GD--GIGpEV~~~a~ 49 (359)
+|++--|| ||||||+-.+.
T Consensus 1 ~iaIT~GDp~GIGpEii~ka~ 21 (320)
T TIGR00557 1 RIAITLGDPAGIGPEIILKAL 21 (320)
T ss_pred CEEEecCCCcchHHHHHHHHH
Confidence 46777787 89999987663
No 141
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=20.07 E-value=6.5e+02 Score=22.70 Aligned_cols=82 Identities=9% Similarity=-0.012 Sum_probs=40.7
Q ss_pred ecHHHHHHHHHHHHHHHHhc--CCCcEEEEEcCCchhhchHHHHHHHHHHHhhCC-cee-ec---eeeHhH---HHHHHH
Q 018224 164 ITKFCSERIAKYAFEYAYLN--YRKKVTAVHKANIMKLADGLFLESCREVATKYP-SIK-YN---EIIVDN---CCMQLV 233 (359)
Q Consensus 164 ~Tr~~~eRiar~AFe~A~~r--~~~~Vt~v~KaNvl~~tdglf~~~~~eva~eyp-dI~-~~---~~~vD~---~~~~Lv 233 (359)
-.....+..+++.++.+.+. |+++|-++.-..-.. ....+.+-|++..+++. ++. +. ....+. ++.+++
T Consensus 102 d~~~~g~~~~~~l~~~~~~~~~g~~~i~~i~~~~~~~-~~~~r~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 180 (277)
T cd06319 102 DNYEGAYDLGKFLAAAMKAQGWADGKVGMVAIPQKRK-NGQKRTKGFKEAMKEAGCDLAGIRQQKDFSYQETFDYTNDLL 180 (277)
T ss_pred ccHHHHHHHHHHHHHHHHhhCCCCCcEEEEeccCCCc-cHHHHHHHHHHHHHhcCCceEeeccCCCCCHHHHHHHHHHHH
Confidence 33566778888888877643 456777664211101 11223334444433331 111 10 111122 234666
Q ss_pred hCCCCccEEEeCC
Q 018224 234 SKPEQFDVMVTPN 246 (359)
Q Consensus 234 ~~P~~fdViv~~N 246 (359)
+....+|+|+|.|
T Consensus 181 ~~~~~~~ai~~~~ 193 (277)
T cd06319 181 TANPDIRAIWLQG 193 (277)
T ss_pred HhCCCCCEEEECC
Confidence 6555689999976
No 142
>KOG3812 consensus L-type voltage-dependent Ca2+ channel, beta subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=20.03 E-value=6.7e+02 Score=25.72 Aligned_cols=38 Identities=21% Similarity=0.313 Sum_probs=27.3
Q ss_pred eeeceeeHhHHHH-HHHhC-CCCccEEEeCCcchhhHHHh
Q 018224 218 IKYNEIIVDNCCM-QLVSK-PEQFDVMVTPNLYGNLVSNT 255 (359)
Q Consensus 218 I~~~~~~vD~~~~-~Lv~~-P~~fdViv~~NlfGDILSDl 255 (359)
-...|+.||-++. +|.+- |+.||||+-+|-.-|---.|
T Consensus 308 sq~K~lnvq~va~~klaQc~~e~FdvildENqLedAcehl 347 (475)
T KOG3812|consen 308 SQSKHLNVQMVAADKLAQCPPEGFDVILDENQLEDACEHL 347 (475)
T ss_pred hhhhhchHhhhhcchhhhCChhhhheeeccccHHHHHHHH
Confidence 3667888887765 66655 56999999999876643333
Done!