Query 018224
Match_columns 359
No_of_seqs 138 out of 1267
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 11:52:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018224.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018224hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3blx_A Isocitrate dehydrogenas 100.0 2E-116 6E-121 864.3 28.9 339 16-358 3-346 (349)
2 1x0l_A Homoisocitrate dehydrog 100.0 1E-115 4E-120 854.4 34.3 323 29-358 1-330 (333)
3 3blx_B Isocitrate dehydrogenas 100.0 7E-115 2E-119 854.4 32.6 332 23-358 15-354 (354)
4 3ty4_A Probable homoisocitrate 100.0 3E-114 1E-118 852.5 33.2 330 24-359 5-365 (366)
5 3flk_A Tartrate dehydrogenase/ 100.0 4E-114 1E-118 852.5 31.3 326 28-358 4-360 (364)
6 3udu_A 3-isopropylmalate dehyd 100.0 1E-112 5E-117 839.0 31.8 325 26-358 3-355 (361)
7 3u1h_A 3-isopropylmalate dehyd 100.0 9E-112 3E-116 838.6 32.3 323 29-358 23-376 (390)
8 2d1c_A Isocitrate dehydrogenas 100.0 2E-111 7E-116 854.6 34.6 328 28-359 18-356 (496)
9 1wpw_A 3-isopropylmalate dehyd 100.0 1E-111 5E-116 826.4 31.8 319 30-359 2-336 (336)
10 3vmk_A 3-isopropylmalate dehyd 100.0 2E-111 6E-116 834.8 31.9 325 27-358 11-371 (375)
11 2y3z_A 3-isopropylmalate dehyd 100.0 1E-111 5E-116 832.3 30.4 322 28-358 2-347 (359)
12 1vlc_A 3-isopropylmalate dehyd 100.0 2E-111 6E-116 832.5 29.0 322 29-358 12-362 (366)
13 1cnz_A IPMDH, IMDH, protein (3 100.0 8E-111 3E-115 828.8 32.1 324 28-358 3-359 (363)
14 3dms_A Isocitrate dehydrogenas 100.0 5E-111 2E-115 844.8 30.7 327 28-359 35-427 (427)
15 3r8w_A 3-isopropylmalate dehyd 100.0 7E-111 2E-115 836.6 29.6 326 27-359 40-398 (405)
16 2e0c_A 409AA long hypothetical 100.0 1E-110 4E-115 838.8 31.6 327 28-359 23-407 (409)
17 2iv0_A Isocitrate dehydrogenas 100.0 1E-110 4E-115 838.7 31.5 325 29-358 27-409 (412)
18 1w0d_A 3-isopropylmalate dehyd 100.0 4E-110 1E-114 817.2 33.3 317 30-358 2-337 (337)
19 1hqs_A Isocitrate dehydrogenas 100.0 1E-109 3E-114 834.7 31.4 327 28-359 18-423 (423)
20 1a05_A IPMDH, IMDH, 3-isopropy 100.0 2E-109 5E-114 818.8 32.0 322 30-359 2-355 (358)
21 2d4v_A Isocitrate dehydrogenas 100.0 2E-109 5E-114 833.9 32.4 326 28-358 25-429 (429)
22 1tyo_A Isocitrate dehydrogenas 100.0 4E-109 1E-113 832.3 32.1 325 28-358 34-421 (435)
23 3us8_A Isocitrate dehydrogenas 100.0 1E-103 3E-108 791.9 24.7 335 15-358 15-421 (427)
24 2uxq_A Isocitrate dehydrogenas 100.0 9E-103 3E-107 781.7 25.8 323 28-358 5-397 (402)
25 1lwd_A Isocitrate dehydrogenas 100.0 2E-100 5E-105 767.7 25.3 322 29-358 8-406 (413)
26 1zor_A Isocitrate dehydrogenas 100.0 4E-100 1E-104 762.3 26.0 322 29-358 7-395 (399)
27 4aoy_A Isocitrate dehydrogenas 100.0 2.7E-99 9E-104 754.8 26.4 323 29-359 7-399 (402)
28 2qfy_A Isocitrate dehydrogenas 100.0 6E-98 2E-102 751.5 22.0 322 29-358 22-419 (427)
29 3lxy_A 4-hydroxythreonine-4-ph 96.8 0.0051 1.7E-07 59.9 9.8 136 162-312 178-327 (334)
30 1itw_A Isocitrate dehydrogenas 96.7 0.06 2.1E-06 55.5 16.8 188 150-343 447-653 (741)
31 2b0t_A NADP isocitrate dehydro 96.7 0.061 2.1E-06 55.4 16.8 188 150-343 443-649 (738)
32 2hi1_A 4-hydroxythreonine-4-ph 95.9 0.0084 2.9E-07 58.3 5.9 134 163-311 181-327 (330)
33 1yxo_A 4-hydroxythreonine-4-ph 95.4 0.0072 2.5E-07 58.7 3.2 135 163-312 174-322 (328)
34 4aty_A Terephthalate 1,2-CIS-d 95.4 0.0097 3.3E-07 58.2 4.1 135 162-312 195-340 (349)
35 3tsn_A 4-hydroxythreonine-4-ph 94.2 0.025 8.5E-07 55.6 3.3 80 223-312 282-362 (367)
36 3cis_A Uncharacterized protein 82.2 29 0.001 31.5 15.9 156 56-246 100-275 (309)
37 3l49_A ABC sugar (ribose) tran 74.1 9.8 0.00034 33.8 8.0 177 26-246 2-199 (291)
38 2af4_C Phosphate acetyltransfe 66.4 13 0.00043 35.6 7.2 97 163-259 177-288 (333)
39 1e2b_A Enzyme IIB-cellobiose; 64.7 24 0.00082 27.9 7.5 70 28-112 2-72 (106)
40 3ksm_A ABC-type sugar transpor 63.9 16 0.00056 31.8 7.0 81 166-247 108-196 (276)
41 1vi1_A Fatty acid/phospholipid 62.4 45 0.0015 31.9 10.3 152 163-328 147-329 (345)
42 1u7n_A Fatty acid/phospholipid 59.9 53 0.0018 31.2 10.3 134 164-312 150-317 (336)
43 1vmi_A Putative phosphate acet 57.9 21 0.00073 34.4 7.1 98 163-260 184-296 (355)
44 1td9_A Phosphate acetyltransfe 57.6 20 0.00068 34.1 6.8 98 163-260 178-289 (329)
45 3kjx_A Transcriptional regulat 57.6 1.1E+02 0.0038 27.7 17.1 74 16-92 55-133 (344)
46 3m9w_A D-xylose-binding peripl 56.4 1.1E+02 0.0037 27.2 15.7 62 28-92 1-67 (313)
47 4hc4_A Protein arginine N-meth 55.2 11 0.00037 36.8 4.6 59 180-252 101-162 (376)
48 2rjo_A Twin-arginine transloca 54.7 28 0.00096 31.7 7.2 71 174-246 123-205 (332)
49 2fn9_A Ribose ABC transporter, 54.5 52 0.0018 28.9 8.8 80 165-246 107-199 (290)
50 3kuu_A Phosphoribosylaminoimid 54.2 31 0.0011 30.3 6.8 63 25-91 8-75 (174)
51 1r5j_A Putative phosphotransac 53.1 47 0.0016 31.4 8.6 100 163-262 182-295 (337)
52 3olq_A Universal stress protei 52.4 1.3E+02 0.0044 26.9 11.8 104 55-193 85-201 (319)
53 3l6u_A ABC-type sugar transpor 52.4 36 0.0012 30.0 7.4 182 26-246 5-203 (293)
54 1yco_A Branched-chain phosphot 51.2 1.5E+02 0.0052 27.4 11.7 105 165-274 126-247 (279)
55 3o74_A Fructose transport syst 49.9 47 0.0016 28.7 7.6 73 172-246 107-188 (272)
56 4grd_A N5-CAIR mutase, phospho 49.8 37 0.0013 29.8 6.6 61 27-91 10-75 (173)
57 3miz_A Putative transcriptiona 49.2 70 0.0024 28.3 8.8 65 25-92 9-79 (301)
58 4azs_A Methyltransferase WBDD; 47.6 40 0.0014 34.1 7.6 66 175-249 80-145 (569)
59 3uf6_A LMO1369 protein; struct 46.0 1.1E+02 0.0038 28.5 9.9 214 25-274 14-263 (291)
60 3dlo_A Universal stress protei 45.6 32 0.0011 28.0 5.5 26 167-193 36-61 (155)
61 2x7x_A Sensor protein; transfe 45.3 64 0.0022 29.2 8.0 72 175-247 116-197 (325)
62 3d8u_A PURR transcriptional re 45.3 1.1E+02 0.0037 26.4 9.3 73 172-246 107-189 (275)
63 3trh_A Phosphoribosylaminoimid 44.7 38 0.0013 29.6 5.8 61 27-91 4-69 (169)
64 3uug_A Multiple sugar-binding 43.3 1.8E+02 0.0061 25.9 14.5 63 28-93 2-69 (330)
65 3tb6_A Arabinose metabolism tr 43.0 77 0.0026 27.7 7.9 62 29-93 15-81 (298)
66 1tvm_A PTS system, galactitol- 42.7 60 0.002 25.7 6.5 61 24-92 16-78 (113)
67 1u11_A PURE (N5-carboxyaminoim 42.5 50 0.0017 29.2 6.3 59 29-91 21-84 (182)
68 4aty_A Terephthalate 1,2-CIS-d 42.5 15 0.00051 35.4 3.2 21 28-48 7-29 (349)
69 1xmp_A PURE, phosphoribosylami 42.2 48 0.0017 28.9 6.1 59 29-91 11-74 (170)
70 3lp6_A Phosphoribosylaminoimid 41.6 54 0.0018 28.7 6.3 59 29-91 7-70 (174)
71 2fhp_A Methylase, putative; al 41.6 1E+02 0.0036 24.9 8.2 66 176-249 59-127 (187)
72 1gud_A ALBP, D-allose-binding 41.5 71 0.0024 28.2 7.5 60 185-246 133-201 (288)
73 3lxy_A 4-hydroxythreonine-4-ph 41.1 18 0.00063 34.8 3.6 21 28-48 7-29 (334)
74 3jy6_A Transcriptional regulat 40.6 49 0.0017 29.0 6.2 74 172-246 110-189 (276)
75 3k9c_A Transcriptional regulat 40.5 85 0.0029 27.7 7.9 72 172-246 113-193 (289)
76 4b4k_A N5-carboxyaminoimidazol 40.3 53 0.0018 29.0 6.1 58 30-91 23-85 (181)
77 2ioy_A Periplasmic sugar-bindi 39.7 87 0.003 27.5 7.8 70 175-246 111-191 (283)
78 3brq_A HTH-type transcriptiona 39.2 1.1E+02 0.0036 26.7 8.3 65 25-92 15-86 (296)
79 3mt0_A Uncharacterized protein 38.9 2.1E+02 0.007 25.3 13.7 122 39-194 47-178 (290)
80 3d02_A Putative LACI-type tran 38.3 1.1E+02 0.0038 26.9 8.3 60 28-92 3-70 (303)
81 3ors_A N5-carboxyaminoimidazol 37.6 66 0.0023 27.8 6.2 59 29-91 3-66 (163)
82 3egc_A Putative ribose operon 36.9 1.5E+02 0.005 25.9 8.9 175 26-246 5-194 (291)
83 2h3h_A Sugar ABC transporter, 36.9 1.4E+02 0.0047 26.6 8.8 72 174-247 110-191 (313)
84 1tjy_A Sugar transport protein 36.5 1.7E+02 0.0059 26.2 9.5 63 183-246 126-197 (316)
85 3idf_A USP-like protein; unive 36.4 1.3E+02 0.0044 23.1 7.6 28 167-195 12-40 (138)
86 3dbi_A Sugar-binding transcrip 35.8 1.1E+02 0.0038 27.6 8.1 185 17-246 49-250 (338)
87 2hi1_A 4-hydroxythreonine-4-ph 35.7 21 0.00071 34.4 3.0 17 32-48 9-27 (330)
88 3gv0_A Transcriptional regulat 35.6 1.4E+02 0.0047 26.2 8.5 73 172-246 114-196 (288)
89 3oow_A Phosphoribosylaminoimid 35.4 73 0.0025 27.7 6.2 58 30-91 6-68 (166)
90 3brs_A Periplasmic binding pro 34.9 1.3E+02 0.0043 26.3 8.0 72 173-246 117-198 (289)
91 3k4h_A Putative transcriptiona 34.9 2.2E+02 0.0076 24.6 10.0 73 172-246 118-200 (292)
92 3cs3_A Sugar-binding transcrip 34.2 2E+02 0.0067 24.9 9.2 59 26-92 5-66 (277)
93 3fdx_A Putative filament prote 34.0 54 0.0019 25.5 4.9 26 169-195 16-41 (143)
94 3quf_A Extracellular solute-bi 34.0 96 0.0033 28.9 7.5 57 185-246 29-91 (414)
95 3gbv_A Putative LACI-family tr 33.2 2E+02 0.0068 25.0 9.1 65 26-93 5-79 (304)
96 2rgy_A Transcriptional regulat 32.7 1.5E+02 0.0052 26.0 8.2 64 26-92 5-76 (290)
97 3k01_A Acarbose/maltose bindin 32.5 53 0.0018 30.8 5.3 59 185-245 27-91 (412)
98 3qk7_A Transcriptional regulat 32.4 1.8E+02 0.0063 25.5 8.8 64 26-93 3-75 (294)
99 1dbq_A Purine repressor; trans 32.3 2.2E+02 0.0076 24.6 9.2 64 26-92 4-72 (289)
100 3bbl_A Regulatory protein of L 32.0 1.5E+02 0.0052 25.9 8.1 63 27-92 2-73 (287)
101 3i3v_A Probable secreted solut 31.7 1.1E+02 0.0039 28.3 7.5 62 184-245 6-71 (405)
102 3g1w_A Sugar ABC transporter; 31.5 1.4E+02 0.0047 26.3 7.7 73 173-247 113-196 (305)
103 3e3m_A Transcriptional regulat 31.4 1.6E+02 0.0054 26.9 8.4 65 25-92 66-135 (355)
104 2zqe_A MUTS2 protein; alpha/be 31.0 1.2E+02 0.0041 22.8 6.2 57 158-219 6-62 (83)
105 3c3k_A Alanine racemase; struc 30.8 1.8E+02 0.0061 25.4 8.4 64 26-92 5-73 (285)
106 3rg8_A Phosphoribosylaminoimid 30.5 87 0.003 27.0 5.8 58 30-91 3-66 (159)
107 3nbm_A PTS system, lactose-spe 30.4 1E+02 0.0034 24.5 5.9 57 28-92 5-62 (108)
108 3rot_A ABC sugar transporter, 30.0 2E+02 0.007 25.2 8.7 72 173-246 116-196 (297)
109 2fep_A Catabolite control prot 29.7 1.4E+02 0.0048 26.2 7.5 64 26-92 13-81 (289)
110 2q62_A ARSH; alpha/beta, flavo 29.1 1.5E+02 0.0051 26.7 7.6 82 26-114 31-124 (247)
111 3tsn_A 4-hydroxythreonine-4-ph 28.9 32 0.0011 33.6 3.1 20 29-48 4-25 (367)
112 3g85_A Transcriptional regulat 28.5 1.7E+02 0.0059 25.4 7.8 64 26-92 8-77 (289)
113 3cis_A Uncharacterized protein 27.5 2.7E+02 0.0092 24.8 9.1 26 167-193 30-55 (309)
114 2iks_A DNA-binding transcripti 27.2 2.9E+02 0.0098 24.1 9.1 72 173-246 126-205 (293)
115 1ws6_A Methyltransferase; stru 27.2 2E+02 0.0068 22.7 7.4 65 176-249 56-121 (171)
116 3clk_A Transcription regulator 26.0 1.9E+02 0.0063 25.3 7.6 65 26-92 5-74 (290)
117 2qh8_A Uncharacterized protein 26.0 2.2E+02 0.0077 25.2 8.2 62 26-89 5-75 (302)
118 2hsg_A Glucose-resistance amyl 25.8 1.8E+02 0.0062 26.1 7.6 37 25-61 56-95 (332)
119 3qd7_X Uncharacterized protein 25.8 1.9E+02 0.0066 23.9 7.0 62 158-219 49-111 (137)
120 3kke_A LACI family transcripti 25.6 3E+02 0.01 24.1 9.0 65 25-92 11-80 (303)
121 4e4r_A Phosphate acetyltransfe 25.5 1.7E+02 0.0059 27.7 7.6 99 165-263 177-293 (331)
122 3uor_A ABC transporter sugar b 25.4 1.1E+02 0.0036 29.4 6.2 58 185-246 29-91 (458)
123 1v5i_B POIA1, IA-1=serine prot 25.3 1.5E+02 0.0051 21.6 5.7 55 28-84 3-59 (76)
124 3gyb_A Transcriptional regulat 25.2 2.3E+02 0.008 24.4 8.0 59 26-88 2-65 (280)
125 1yxo_A 4-hydroxythreonine-4-ph 25.2 37 0.0012 32.7 2.7 18 31-48 4-23 (328)
126 3bvr_A NOTI restriction endonu 24.3 19 0.00065 34.4 0.5 32 234-265 71-105 (383)
127 2ywx_A Phosphoribosylaminoimid 23.2 1.5E+02 0.005 25.5 5.9 56 32-91 2-59 (157)
128 1nha_A TFIIF-alpha, transcript 22.3 39 0.0013 26.1 1.8 35 324-358 21-62 (82)
129 2h0a_A TTHA0807, transcription 22.1 3.2E+02 0.011 23.3 8.3 71 174-246 103-188 (276)
130 1o4v_A Phosphoribosylaminoimid 22.0 1.7E+02 0.0058 25.7 6.1 58 30-91 14-76 (183)
131 3cfx_A UPF0100 protein MA_0280 21.9 1.6E+02 0.0055 26.3 6.4 58 186-247 5-64 (296)
132 3jvd_A Transcriptional regulat 21.8 2.3E+02 0.008 25.5 7.6 72 172-246 161-239 (333)
133 3lft_A Uncharacterized protein 21.7 2.7E+02 0.0092 24.5 7.8 58 29-89 2-68 (295)
134 2fvy_A D-galactose-binding per 21.4 3.9E+02 0.013 23.1 8.8 83 162-246 109-211 (309)
135 1elj_A Maltodextrin-binding pr 21.4 95 0.0033 28.7 4.8 44 202-245 20-66 (381)
136 3c9h_A ABC transporter, substr 21.3 1.1E+02 0.0036 28.1 5.1 56 186-246 34-95 (355)
137 3hs3_A Ribose operon repressor 21.3 2E+02 0.0068 25.0 6.8 70 174-246 112-186 (277)
138 2p8i_A Putative dioxygenase; Y 21.0 81 0.0028 25.8 3.6 36 218-254 62-97 (117)
139 2qu7_A Putative transcriptiona 21.0 3.1E+02 0.011 23.7 8.0 64 26-92 5-72 (288)
140 4ef1_A Pheromone COB1/lipoprot 20.7 84 0.0029 28.8 4.1 57 28-91 4-60 (246)
141 3hem_A Cyclopropane-fatty-acyl 20.1 2E+02 0.007 25.6 6.7 62 175-251 86-150 (302)
No 1
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A*
Probab=100.00 E-value=1.7e-116 Score=864.35 Aligned_cols=339 Identities=46% Similarity=0.729 Sum_probs=318.1
Q ss_pred cccc-cCCCCCCCCcceEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEecCc-ccCCcHHHHHHHHhcCceeecccc
Q 018224 16 RSVT-YMPRPGDGSPRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGD-MKRVPQQVLDSIRKNKVCLKGGLK 93 (359)
Q Consensus 16 ~~~~-~~~~~~~~~~~~I~vi~GDGIGpEV~~~a~~vl~~~~~~ie~~~~~~g~~-~~~lp~et~~~~~~~da~l~G~~~ 93 (359)
+|.+ .+|+.+|+++++|++|||||||||||+++++||++++++++|+++++|.+ -+++|++++++|+++|++||||++
T Consensus 3 ~~~~~~~~~~~~~~~~~I~vipGDGIGpEv~~~~~~Vl~a~~~~i~~~~~~~G~~~g~~lp~~tl~~~~~~da~l~Gav~ 82 (349)
T 3blx_A 3 AAQAERTLPKKYGGRFTVTLIPGDGVGKEITDSVRTIFEAENIPIDWETINIKQTDHKEGVYEAVESLKRNKIGLKGLWH 82 (349)
T ss_dssp ----------CCCCCEEEEEEEESHHHHHHHHHHHHHHHHTTCSEEEEECCCSSTTCHHHHHHHHHHHHHHSEEEEEECC
T ss_pred ccccccCCccccCCceEEEEECCCCcCHHHHHHHHHHHHHcCCCeEEEEEecCcccCCcCcHHHHHHHHHCCEEEECCcc
Confidence 4444 55677899999999999999999999999999999999999999999985 338999999999999999999999
Q ss_pred CCCC-CCcccchHHHHhhcCcEEEEEEeecCCCCCCCcccccEEEEecCCcceEeccceeeeCCEEEEEEeecHHHHHHH
Q 018224 94 TPVG-GGVSSLNVQLRKELDLYAALVNCFNLPGLPTRHQNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERI 172 (359)
Q Consensus 94 ~p~~-~~~~s~~~~LR~~ldlyanvRP~~~~pg~~~~~~~iDivivREnteG~Y~g~~~~~~~~va~~~~~~Tr~~~eRi 172 (359)
+|.. ++++|+|++||+.||||+|+|||+++||+++|++++|+|||||||||+|+|.+++..+++++++++|||+++|||
T Consensus 83 ~P~~~~~~~s~~l~lR~~ldlyan~RP~~~~pg~~~~~~~vD~vivREnteg~Y~g~e~~~~~gva~~~~~~T~~~~eRi 162 (349)
T 3blx_A 83 TPADQTGHGSLNVALRKQLDIYANVALFKSLKGVKTRIPDIDLIVIRENTEGEFSGLEHESVPGVVESLKVMTRPKTERI 162 (349)
T ss_dssp SHHHHHTCHHHHHHHHHTSCEEEEEEEEECCTTCCCSSCSCEEEEEEECSSGGGGCEEEECSTTEEEEEEEEEHHHHHHH
T ss_pred CCCCCCCccCchHHHHHHcCCEEEEEEEeccCCCCCCCCCcCEEEEecCCCCcEeCCceeccCCeEEEEEEeCHHHHHHH
Confidence 9854 467799999999999999999999999999999999999999999999999998877889999999999999999
Q ss_pred HHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHH-hhCCceeeceeeHhHHHHHHHhCCCCccEEEeCCcchhh
Q 018224 173 AKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVA-TKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNL 251 (359)
Q Consensus 173 ar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva-~eypdI~~~~~~vD~~~~~Lv~~P~~fdViv~~NlfGDI 251 (359)
+|+||+||++|+++|||+|||+|||+.+||+|+++|+||+ ++||||+++|++||+++||||++|++||||||+||||||
T Consensus 163 ar~AF~~A~~r~rkkVt~v~KaNvlk~sdglf~~~~~eva~~eyp~i~~~~~~vD~~~~qlv~~P~~FDVivt~NlfGDI 242 (349)
T 3blx_A 163 ARFAFDFAKKYNRKSVTAVHKANIMKLGDGLFRNIITEIGQKEYPDIDVSSIIVDNASMQAVAKPHQFDVLVTPSMYGTI 242 (349)
T ss_dssp HHHHHHHHHHTTCCEEEEEECTTTSTTHHHHHHHHHHHHHHHHCTTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHH
T ss_pred HHHHHHHHHhcCCCcEEEEeCCccchhhHHHHHHHHHHHHHhhCCCeeEEEeeHHHHHHHHhhCcccccEEEECCcchHH
Confidence 9999999999988999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHhhhhhcCCCCccceeeeCCCcceEeccccCCC-CCcccccccccCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 018224 252 VSNTAAGIAGGTGVMPGGNVGADTAVFEQGASAGN-VGNEKVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRV 330 (359)
Q Consensus 252 LSDlaa~l~GglGl~psanig~~~a~FEp~~~~~H-GsApdiaGk~~ANP~a~Ils~ammL~~lg~~~~A~~i~~Av~~~ 330 (359)
|||++|+++||+||+||+|+|++.+||||+ | ||||||||||+|||+|+|||++|||+|||++++|++|++||.++
T Consensus 243 lSD~aa~l~GslGl~pSanig~~~a~fEpv----H~GSAPdiAGk~iANP~A~IlS~ammL~~lg~~~~A~~Ie~Av~~~ 318 (349)
T 3blx_A 243 LGNIGAALIGGPGLVAGANFGRDYAVFEPG----SRHVGLDIKGQNVANPTAMILSSTLMLNHLGLNEYATRISKAVHET 318 (349)
T ss_dssp HHHHHHHHHTCGGGCEEEEEESSCEEECCT----TTTSCC--CCTTCSCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCcccceEEEECCCceeEcCC----CCCchhhhcCCCCCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 9 99999999999999999999999999999999999999999999
Q ss_pred HHcCcccCCCCCCCCcHHHHHHHHHHhc
Q 018224 331 ISEEKYRTKDLGGGCTTQQIVDAVIANL 358 (359)
Q Consensus 331 l~~g~~~T~Dlgg~~~T~e~~~av~~~l 358 (359)
+++|+++|+||||++||+||+|+|+++|
T Consensus 319 l~~G~~~T~Dlgg~~~T~e~~daI~~~l 346 (349)
T 3blx_A 319 IAEGKHTTRDIGGSSSTTDFTNEIINKL 346 (349)
T ss_dssp HHSSSSCBGGGTCCBCHHHHHHHHHHHH
T ss_pred HHcCCccCCCcCCCCCHHHHHHHHHHHh
Confidence 9999889999999999999999999987
No 2
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A
Probab=100.00 E-value=1.1e-115 Score=854.45 Aligned_cols=323 Identities=41% Similarity=0.602 Sum_probs=313.3
Q ss_pred cceEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEecCc-cc----CCcHHHHHHHHhcCceeeccccCCC--CCCcc
Q 018224 29 PRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGD-MK----RVPQQVLDSIRKNKVCLKGGLKTPV--GGGVS 101 (359)
Q Consensus 29 ~~~I~vi~GDGIGpEV~~~a~~vl~~~~~~ie~~~~~~g~~-~~----~lp~et~~~~~~~da~l~G~~~~p~--~~~~~ 101 (359)
.++|++|||||||||||+++++||++++++++|+++++|++ ++ ++|++++++|+++|++||||+++|. ..+++
T Consensus 1 ~~~I~vipGDGIGpEv~~~a~~vl~a~~~~~~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~l~Gav~~P~~~~~~~~ 80 (333)
T 1x0l_A 1 AYRICLIEGDGIGHEVIPAARRVLEATGLPLEFVEAEAGWETFERRGTSVPEETVEKILSCHATLFGAATSPTRKVPGFF 80 (333)
T ss_dssp CEEEEEEEESTTHHHHHHHHHHHHHTTTCCEEEEEECCSHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCCSSCCTTCC
T ss_pred CcEEEEECCCCcCHHHHHHHHHHHHHcCCCeEEEEEecchHHHHhhCCcCcHHHHHHHHHCCEEEECCccCCCCCCcCcc
Confidence 37999999999999999999999999999999999999986 43 8999999999999999999999996 45678
Q ss_pred cchHHHHhhcCcEEEEEEeecCCCCCCCcccccEEEEecCCcceEeccceeeeCCEEEEEEeecHHHHHHHHHHHHHHHH
Q 018224 102 SLNVQLRKELDLYAALVNCFNLPGLPTRHQNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAY 181 (359)
Q Consensus 102 s~~~~LR~~ldlyanvRP~~~~pg~~~~~~~iDivivREnteG~Y~g~~~~~~~~va~~~~~~Tr~~~eRiar~AFe~A~ 181 (359)
|+|++||+.||||+|+|||+++| +++|++++|+|||||||||+|+|.+++ .+++++++++|||+++|||+|+||+||+
T Consensus 81 s~~l~lR~~ldlyan~RP~~~~p-~~s~~~~vD~vivREnteg~Y~g~~~~-~~~~a~~~~~~T~~~~eRiar~AF~~A~ 158 (333)
T 1x0l_A 81 GAIRYLRRRLDLYANVRPAKSRP-VPGSRPGVDLVIVRENTEGLYVEQERR-YLDVAIADAVISKKASERIGRAALRIAE 158 (333)
T ss_dssp CHHHHHHHHTTCCEEEEEEECCS-STTCCSSCEEEEEEECGGGTCCCCEEE-ETTEEEEEEEEEHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHcCCEEEEEEEeecc-CCCCCCCCCEEEEecCccceecccccc-CCCeEEEEEEecHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 999999999999999999999999887 6789999999999999999999999999
Q ss_pred hcCCCcEEEEEcCCchhhchHHHHHHHHHHHhhCCceeeceeeHhHHHHHHHhCCCCccEEEeCCcchhhHHHhhhhhcC
Q 018224 182 LNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAG 261 (359)
Q Consensus 182 ~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~eypdI~~~~~~vD~~~~~Lv~~P~~fdViv~~NlfGDILSDlaa~l~G 261 (359)
+|+|||||+|||+|||+.+||||+++|+||+++||||+++|++||+++||||++|++||||||+|||||||||++|+++|
T Consensus 159 ~r~rkkvt~v~KaNvlk~t~glf~~~~~eva~eyp~I~~~~~~vD~~~m~lv~~P~~FDVivt~NlfGDIlSD~aa~l~G 238 (333)
T 1x0l_A 159 GRPRKTLHIAHKANVLPLTQGLFLDTVKEVAKDFPLVNVQDIIVDNCAMQLVMRPERFDVIVTTNLLGDILSDLAAGLVG 238 (333)
T ss_dssp TSTTCEEEEEECTTTCTTHHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTT
T ss_pred hcCCCeEEEEecCccchhhhHHHHHHHHHHHHHCCCceEEEEEHHHHHHHHhhCcccceEEEEcCccchhHhHHHHhhcC
Confidence 99889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccceeeeCCCcceEeccccCCCCCcccccccccCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHcCcccCCCC
Q 018224 262 GTGVMPGGNVGADTAVFEQGASAGNVGNEKVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEEKYRTKDL 341 (359)
Q Consensus 262 glGl~psanig~~~a~FEp~~~~~HGsApdiaGk~~ANP~a~Ils~ammL~~lg~~~~A~~i~~Av~~~l~~g~~~T~Dl 341 (359)
|+||+||+|+|++.+||||+ |||||||||||+|||+|+|||++|||+|||++++|++|++||.+++++| ++|+||
T Consensus 239 slGl~psanig~~~a~fEp~----HGSAPdiaGk~iANP~A~IlS~ammL~~lg~~~~A~~Ie~Av~~~l~~g-~~T~Dl 313 (333)
T 1x0l_A 239 GLGLAPSGNIGDTTAVFEPV----HGSAPDIAGKGIANPTAAILSAAMMLDYLGEKEAAKRVEKAVDLVLERG-PRTPDL 313 (333)
T ss_dssp CSTTCEEEEECSSCEEEEES----SCCCGGGTTSSCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS-CCCGGG
T ss_pred CcccceeeEECCCceEEeCC----CCChhhhcCCCCcCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHcC-CccCcc
Confidence 99999999999999999999 9999999999999999999999999999999999999999999999999 899999
Q ss_pred CCCCcHHHHHHHHHHhc
Q 018224 342 GGGCTTQQIVDAVIANL 358 (359)
Q Consensus 342 gg~~~T~e~~~av~~~l 358 (359)
||++||+||+|+|+++|
T Consensus 314 gG~~~T~e~~daV~~~l 330 (333)
T 1x0l_A 314 GGDATTEAFTEAVVEAL 330 (333)
T ss_dssp TCCCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999999987
No 3
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B
Probab=100.00 E-value=6.6e-115 Score=854.41 Aligned_cols=332 Identities=42% Similarity=0.709 Sum_probs=318.1
Q ss_pred CCCCCCcceEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEecCcc----cCCcHHHHHHHHhcCceeeccccCCCCC
Q 018224 23 RPGDGSPRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDM----KRVPQQVLDSIRKNKVCLKGGLKTPVGG 98 (359)
Q Consensus 23 ~~~~~~~~~I~vi~GDGIGpEV~~~a~~vl~~~~~~ie~~~~~~g~~~----~~lp~et~~~~~~~da~l~G~~~~p~~~ 98 (359)
.++|+++++|++|||||||||||+++++||++++++++|+++++|.+. +++|++++++|+++|++||||+++|..+
T Consensus 15 ~~~~~~~~~I~vipGDGIGpEv~~~~~~Vl~a~~~~i~~~~~~~G~~~~~~g~~lp~~tl~~~~~~da~l~Gav~~P~~~ 94 (354)
T 3blx_B 15 PNPSTGKYTVSFIEGDGIGPEISKSVKKIFSAANVPIEWESCDVSPIFVNGLTTIPDPAVQSITKNLVALKGPLATPIGK 94 (354)
T ss_dssp CCTTTSCEECBCCCCSTTHHHHHHHHHHHHHTTTCSEECCCCCCCCEEETTEEECCHHHHHHHHHHSEEEECCCCCC---
T ss_pred chhcCCceEEEEECCCCcCHHHHHHHHHHHHHcCCCeEEEEEEechhhhhhCCCCCHHHHHHHHHCCEEEECCccCCCCc
Confidence 457878899999999999999999999999999999999999999752 2899999999999999999999999777
Q ss_pred CcccchHHHHhhcCcEEEEEEeecCCCCCCCcccccEEEEecCCcceEeccceeeeCCEEEEEEeecHHHHHHHHHHHHH
Q 018224 99 GVSSLNVQLRKELDLYAALVNCFNLPGLPTRHQNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFE 178 (359)
Q Consensus 99 ~~~s~~~~LR~~ldlyanvRP~~~~pg~~~~~~~iDivivREnteG~Y~g~~~~~~~~va~~~~~~Tr~~~eRiar~AFe 178 (359)
+++|+|++||+.||||+|+|||+++||+++|++++|+|||||||||+|+|.+++..+++++++++|||+++|||+|+||+
T Consensus 95 ~~~s~~l~lR~~ldlyan~RP~~~~pg~~s~~~~vD~vivREnteg~Y~g~e~~~~~~~a~~~~~~T~~~~eRiar~AFe 174 (354)
T 3blx_B 95 GHRSLNLTLRKTFGLFANVRPAKSIEGFKTTYENVDLVLIRENTEGEYSGIEHIVCPGVVQSIKLITRDASERVIRYAFE 174 (354)
T ss_dssp -CCCHHHHHHHHHTEEEEEEEEECCTTCCCSSCSCEEEEEEECSSEEEEEEEEECSTTEEEEEEEEEHHHHHHHHHHHHH
T ss_pred cccCchHHHHHHcCCEEEEEEecccCCCCCCCCCccEEEEecCcCCcccCCcccccCCEEEEEEEEcHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999998877899999999999999999999999
Q ss_pred HHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHhhCCceeeceeeHhHHHHHHHhCCCCcc--EEEeCCcchhhHHHhh
Q 018224 179 YAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFD--VMVTPNLYGNLVSNTA 256 (359)
Q Consensus 179 ~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~eypdI~~~~~~vD~~~~~Lv~~P~~fd--Viv~~NlfGDILSDla 256 (359)
||++|+|+|||+|||+||||.+||||+++|+||+++||||+++|++||+++||||++|++|| ||||+|||||||||++
T Consensus 175 ~A~~r~rkkVt~v~KaNvlk~sdglf~~~~~eva~eypdI~~~~~~vD~~~m~lv~~P~~FD~~Vivt~NlfGDIlSD~a 254 (354)
T 3blx_B 175 YARAIGRPRVIVVHKSTIQRLADGLFVNVAKELSKEYPDLTLETELIDNSVLKVVTNPSAYTDAVSVCPNLYGDILSDLN 254 (354)
T ss_dssp HHHHTTCSEEEEEESCTTTCHHHHHHHHHHHHHGGGCTTSEEEEEEHHHHHHHHHHCGGGGTTEEEEECHHHHHHHHHHH
T ss_pred HHHhcCCCeEEEEECCcchHhHHHHHHHHHHHHHHHCCCceEEEEEHHHHHHHHhhChhhCCceEEEecCcccchhHHHH
Confidence 99999889999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred hhh-cCCCCccceeeeCCCcceEeccccCCCCCcccccccccCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHcC-
Q 018224 257 AGI-AGGTGVMPGGNVGADTAVFEQGASAGNVGNEKVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEE- 334 (359)
Q Consensus 257 a~l-~GglGl~psanig~~~a~FEp~~~~~HGsApdiaGk~~ANP~a~Ils~ammL~~lg~~~~A~~i~~Av~~~l~~g- 334 (359)
|++ +||+||+||+|+|++.+||||+ |||||||||||+|||+|+|||++|||+|||++++|++|++||.+++++|
T Consensus 255 a~l~~GslGl~pSanig~~~a~fEp~----HGSAPdiAGk~iANP~A~IlS~ammL~~lg~~~~A~~Ie~Av~~~l~~g~ 330 (354)
T 3blx_B 255 SGLSAGSLGLTPSANIGHKISIFEAV----HGSAPDIAGQDKANPTALLLSSVMMLNHMGLTNHADQIQNAVLSTIASGP 330 (354)
T ss_dssp HHHHTSSGGGCEEEEEESSCEEEEEC----SCCCGGGTTTTCCCTHHHHHHHHHHHHHHTCHHHHHHHHHTHHHHHTSST
T ss_pred HhhccCCccccceeEECCCceEEecC----CCChhhhcCCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcCC
Confidence 999 9999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCcHHHHHHHHHHhc
Q 018224 335 KYRTKDLGGGCTTQQIVDAVIANL 358 (359)
Q Consensus 335 ~~~T~Dlgg~~~T~e~~~av~~~l 358 (359)
+++|+||||++||+||+|+|+++|
T Consensus 331 ~~~T~DlgG~~~T~e~~dav~~~l 354 (354)
T 3blx_B 331 ENRTGDLAGTATTSSFTEAVIKRL 354 (354)
T ss_dssp TSSCGGGTCCCCHHHHHHHHHHTC
T ss_pred CccCCCcCCCCCHHHHHHHHHhhC
Confidence 589999999999999999999976
No 4
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} SCOP: c.77.1.0 PDB: 3ty3_A
Probab=100.00 E-value=2.9e-114 Score=852.49 Aligned_cols=330 Identities=36% Similarity=0.543 Sum_probs=310.9
Q ss_pred CCCCCcceEEEEcCCCCcHHHHHHHHHHHHHc----CCCeeEEEEEecCc-cc----CCcHHHHHHHHh-cCceeecccc
Q 018224 24 PGDGSPRAVTLIPGDGIGPLVTNAVEQVMEAM----HAPIYFEKYEVHGD-MK----RVPQQVLDSIRK-NKVCLKGGLK 93 (359)
Q Consensus 24 ~~~~~~~~I~vi~GDGIGpEV~~~a~~vl~~~----~~~ie~~~~~~g~~-~~----~lp~et~~~~~~-~da~l~G~~~ 93 (359)
++++++++|++|||||||||||+++++||+++ +++++|+++++|++ ++ ++|++++++|++ +|++||||++
T Consensus 5 ~~~~~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~~da~L~Gavg 84 (366)
T 3ty4_A 5 MSATRRIVLGLIPADGIGKEVVPAARRLMENLPAKHKLKFDFIDLDAGWGTFERTGKALPERTVERLKTECNAALFGAVQ 84 (366)
T ss_dssp ----CEEEEEEEEESTTHHHHHHHHHHHHHTCCGGGCCEEEEEECCCSHHHHHHHSCSSCHHHHHHHHHHCSEEEEEECC
T ss_pred cCCCCceEEEEECCCccCHHHHHHHHHHHHHHHHhcCCceEEEEecchHHHHHhhCCCCCHHHHHHHHHhCCEEEECCcc
Confidence 45567899999999999999999999999986 78899999999976 43 899999999999 5999999999
Q ss_pred CCCCC--CcccchHHHHhhcCcEEEEEEeecCCCCCCCcccccEEEEecCCcceEeccceee----eCCEEEEEEeecHH
Q 018224 94 TPVGG--GVSSLNVQLRKELDLYAALVNCFNLPGLPTRHQNVDIVVIRENTEGEYSGLEHEV----VPGVVESLKVITKF 167 (359)
Q Consensus 94 ~p~~~--~~~s~~~~LR~~ldlyanvRP~~~~pg~~~~~~~iDivivREnteG~Y~g~~~~~----~~~va~~~~~~Tr~ 167 (359)
+|..+ +++|+++.||+.||||+|+|||+++||++ ..++|||||||||||+|+|.+++. .+++++++++|||+
T Consensus 85 ~P~~~~~~~~s~~l~LRk~ldlyaNvRP~~~~~g~~--~~~vD~vivREnTeG~Y~g~e~~~~~~~~~~~a~~~~~~Tr~ 162 (366)
T 3ty4_A 85 SPTHKVAGYSSPIVALRKKMGLYANVRPVKSLDGAK--GKPVDLVIVRENTECLYVKEERMVQNTPGKRVAEAIRRISEE 162 (366)
T ss_dssp CCSSCCTTCCCHHHHHHHHTTCCEEEEEEECCTTCS--SSCCEEEEEEECSCBGGGCCEEEEECCTTCCEEEEEEEEEHH
T ss_pred CCCCCCcccccchHHHHHHhCCeEEEEEEeccCCCC--CCCCcEEEEeeCCCCEeecCcceeccCCCCceEEEEEEecHH
Confidence 99654 67899999999999999999999999984 246999999999999999999875 45799999999999
Q ss_pred HHHHHHHHHHHHHHhc------------CCCcEEEEEcCCchhhchHHHHHHHHHH---HhhCCceeeceeeHhHHHHHH
Q 018224 168 CSERIAKYAFEYAYLN------------YRKKVTAVHKANIMKLADGLFLESCREV---ATKYPSIKYNEIIVDNCCMQL 232 (359)
Q Consensus 168 ~~eRiar~AFe~A~~r------------~~~~Vt~v~KaNvl~~tdglf~~~~~ev---a~eypdI~~~~~~vD~~~~~L 232 (359)
++|||+|+||+||++| +|++||+|||+|||+.++|||+++|+|| +++||||+++|++||+++|||
T Consensus 163 ~~eRIar~AFe~A~~r~~~~~~~~~~~~~rkkVt~v~KaNVl~~s~glf~~~~~ev~~~a~eypdV~~~~~~VD~~am~l 242 (366)
T 3ty4_A 163 ASTKIGKMAFEIAKSRQKIRESGTYSIHKKPLVTIIHKSNVMSVTDGLFRESCRHAQSLDPSYASINVDEQIVDSMVYRL 242 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCSCSSCEEEEEECTTTCTTHHHHHHHHHHHHGGGCGGGTTSEEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCccccccccccCCCCeEEEEECCcchHhHHHHHHHHHHHHHHhHhhCCCceEEeeeHHHHHHHH
Confidence 9999999999999998 6899999999999999999999999999 999999999999999999999
Q ss_pred HhCCCCccEEEeCCcchhhHHHhhhhhcCCCCccceeeeCCCcceEeccccCCCCCcccccccccCChhHHHHHHHHHHh
Q 018224 233 VSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGGNVGADTAVFEQGASAGNVGNEKVVEQKKANPVALLLSSAMMLR 312 (359)
Q Consensus 233 v~~P~~fdViv~~NlfGDILSDlaa~l~GglGl~psanig~~~a~FEp~~~~~HGsApdiaGk~~ANP~a~Ils~ammL~ 312 (359)
|++|++||||||+|||||||||++|+++||+||+||+|+|++++||||+ |||||||||||+|||+|+|||++|||+
T Consensus 243 v~~P~~FDViVt~NlfGDILSD~aa~l~GslGl~pSanig~~~a~fEpv----HGSAPdIaGk~iANP~A~IlS~amML~ 318 (366)
T 3ty4_A 243 FREPECFDVVVAPNLYGDILSDGAASLIGSLGLVPSANVGDNFVMSEPV----HGSAPDIAGRGIANPVATFRSVALMLE 318 (366)
T ss_dssp HHCGGGCSEEEECHHHHHHHHHHHHGGGSCGGGCCCEEECSSCEEECCS----SCCCTTTTTSSCCCCHHHHHHHHHHHH
T ss_pred HhCcccCcEEEECccchHHHHHHHHHhcCchhhhcceeeCCCceEEecC----CCChhhcCCCCccCcHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999989999999 999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHHHHcCcccCCCCCCCCcHHHHHHHHHHhcC
Q 018224 313 HLQFPSFADRLETAVKRVISEEKYRTKDLGGGCTTQQIVDAVIANLD 359 (359)
Q Consensus 313 ~lg~~~~A~~i~~Av~~~l~~g~~~T~Dlgg~~~T~e~~~av~~~l~ 359 (359)
|||++++|++|++||.+++++|+++|+||||++||+||+|+|+++|+
T Consensus 319 ~lg~~~~A~~Ie~Av~~~l~~G~~~T~Dlgg~~~T~e~~daV~~~l~ 365 (366)
T 3ty4_A 319 FMGHQDAAADIYTAVDKVLTEGKVLTPDLGGKSGTNEITDAVLANIH 365 (366)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHCSSCCGGGTSCCCHHHHHHHHHHHC-
T ss_pred HCCCHHHHHHHHHHHHHHHHcCCccCcccCCCcCHHHHHHHHHHHhh
Confidence 99999999999999999999998899999999999999999999884
No 5
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X*
Probab=100.00 E-value=3.6e-114 Score=852.47 Aligned_cols=326 Identities=30% Similarity=0.500 Sum_probs=310.4
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHHHHHc----CCCeeEEEEEecC-c-cc----CCcHHHHHHHHhcCceeeccccCCC-
Q 018224 28 SPRAVTLIPGDGIGPLVTNAVEQVMEAM----HAPIYFEKYEVHG-D-MK----RVPQQVLDSIRKNKVCLKGGLKTPV- 96 (359)
Q Consensus 28 ~~~~I~vi~GDGIGpEV~~~a~~vl~~~----~~~ie~~~~~~g~-~-~~----~lp~et~~~~~~~da~l~G~~~~p~- 96 (359)
.+++|+||||||||||||+++++||+++ +++++|+++++|+ + ++ ++|++++++|+++|++||||+++|.
T Consensus 4 ~~~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~~g~~lp~~tl~~~~~~da~L~Gavg~P~~ 83 (364)
T 3flk_A 4 HSFRIAAIPGDGIGLEVLPEGIRVLEAAALKHGLALEFDTFEWASCDYYLQHGKMMPDDWAEQLKQYDAIYFGAVGWPDK 83 (364)
T ss_dssp -CEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCCEEEEECCCSSHHHHHHHSSSSCTTHHHHHTTSSEEEEEECCBTTT
T ss_pred CceEEEEECCCcccHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCcHHHHhccCCcCCHHHHHHHHHCCEEEECCccCccc
Confidence 4689999999999999999999999985 7999999999999 6 43 8999999999999999999999994
Q ss_pred -CCCc--ccchHHHHhhcCcEEEEEEeecCCCCCCCc-----ccccEEEEecCCcceEeccceeee----CCEEEEEEee
Q 018224 97 -GGGV--SSLNVQLRKELDLYAALVNCFNLPGLPTRH-----QNVDIVVIRENTEGEYSGLEHEVV----PGVVESLKVI 164 (359)
Q Consensus 97 -~~~~--~s~~~~LR~~ldlyanvRP~~~~pg~~~~~-----~~iDivivREnteG~Y~g~~~~~~----~~va~~~~~~ 164 (359)
++++ +|+|+.||+.||||+|+|||+++||+++|+ +++|||||||||||+|+|.+++.. +++++++++|
T Consensus 84 ~~~~~~~~s~~l~LR~~ldlyanvRP~~~~pg~~splk~~~~~~vD~vivREnteG~Y~g~~~~~~~~~~~~~a~~~~~~ 163 (364)
T 3flk_A 84 VPDHISLWGSLLKFRREFDQYVNIRPVRLFPGVPCALANRKVGDIDFVVVRENTEGEYSSLGGIMFENTENEIVIQESIF 163 (364)
T ss_dssp BCHHHHHHTTHHHHHHHTTCCEEEEEEECCTTCCCSBTTCCTTSSEEEEEEECSSBTCCCCEEEESTTSTTCEEEEEEEE
T ss_pred CCCCcCcccchHHHHHHhCCeEEEEEEeccCCcccccccccCCCCCEEEEeeCCCceecCcCceeccCCCCCEEEEEEEE
Confidence 2222 688999999999999999999999999998 579999999999999999988763 6799999999
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHhhCCceeeceeeHhHHHHHHHhCCCCccEEEe
Q 018224 165 TKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVT 244 (359)
Q Consensus 165 Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~eypdI~~~~~~vD~~~~~Lv~~P~~fdViv~ 244 (359)
||+++|||+|+||+||++|++|+||+|||+|||+.++|||+++|+||+++||||+++|++||+++||||++|++||||||
T Consensus 164 T~~~~eRIar~AFe~A~~r~~kkVt~v~KaNvlk~s~glf~~~~~eva~eypdv~~~~~~vD~~am~lv~~P~~FDVivt 243 (364)
T 3flk_A 164 TRRGVDRILKYAFDLAEKRERKHVTSATKSNGMAISMPYWDKRTEAMAAHYPHVSWDKQHIDILCARFVLQPERFDVVVA 243 (364)
T ss_dssp EHHHHHHHHHHHHHHHHHSSSCEEEEEECTTTSTTHHHHHHHHHHHHHTTCTTCEEEEEEHHHHHHHHHHCGGGCSEEEE
T ss_pred CHHHHHHHHHHHHHHHHhcCCCeEEEEECcchhhhHHHHHHHHHHHHHHHCCCceEEeeEHHHHHHHHHhCcccCcEEEe
Confidence 99999999999999999998889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchhhHHHhhhhhcCCCCccceeeeCCCc---ceEeccccCCCCCcccccccccCChhHHHHHHHHHHhhcC-----C
Q 018224 245 PNLYGNLVSNTAAGIAGGTGVMPGGNVGADT---AVFEQGASAGNVGNEKVVEQKKANPVALLLSSAMMLRHLQ-----F 316 (359)
Q Consensus 245 ~NlfGDILSDlaa~l~GglGl~psanig~~~---a~FEp~~~~~HGsApdiaGk~~ANP~a~Ils~ammL~~lg-----~ 316 (359)
+|||||||||++|+++||+||+||+|+|++. +||||+ |||||||||||+|||+|+|||++|||+||| +
T Consensus 244 ~NlfGDILSD~aa~l~GslGl~pSanig~~~~~~a~fEp~----HGSAPdiAGk~iANP~A~IlS~ammL~~lg~~~~~~ 319 (364)
T 3flk_A 244 SNLFGDILSDLGPACAGTIGIAPSANLNPERNFPSLFEPV----HGSAPDIFGKNIANPIAMIWSGALMLEFLGQGDERY 319 (364)
T ss_dssp CHHHHHHHHHHHHHHTTCSTTCEEEEECTTCSSCEEEEES----SCCCTTTTTSSCCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred cccchHHHHHHHHHhcCCcccccccccCCCCCcceEEecC----CCCchhhcCCCccCcHHHHHHHHHHHHHhCcccchh
Confidence 9999999999999999999999999999875 999999 999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHHHHcCcccCCCCCCCCcHHHHHHHHHHhc
Q 018224 317 PSFADRLETAVKRVISEEKYRTKDLGGGCTTQQIVDAVIANL 358 (359)
Q Consensus 317 ~~~A~~i~~Av~~~l~~g~~~T~Dlgg~~~T~e~~~av~~~l 358 (359)
+++|++|++||.+++++| ++|+||||.+||+||+++|+++|
T Consensus 320 ~~~A~~Ie~Av~~~l~~G-~~T~Dlgg~~~T~e~~~aV~~~l 360 (364)
T 3flk_A 320 QRAHDDMLNAIERVIADG-SVTPDMGGTLSTQQVGAAISDTL 360 (364)
T ss_dssp HHHHHHHHHHHHHHHHHT-CCCGGGTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcC-CCCcccCCCcCHHHHHHHHHHHH
Confidence 999999999999999999 69999999999999999999987
No 6
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.85A {Campylobacter jejuni} SCOP: c.77.1.1 PDB: 3udo_A
Probab=100.00 E-value=1.5e-112 Score=838.97 Aligned_cols=325 Identities=28% Similarity=0.438 Sum_probs=304.6
Q ss_pred CCCcceEEEEcCCCCcHHHHHHHHHHHHHc----CCCeeEEEEEecCc-cc----CCcHHHHHHHHhcCceeeccccCCC
Q 018224 26 DGSPRAVTLIPGDGIGPLVTNAVEQVMEAM----HAPIYFEKYEVHGD-MK----RVPQQVLDSIRKNKVCLKGGLKTPV 96 (359)
Q Consensus 26 ~~~~~~I~vi~GDGIGpEV~~~a~~vl~~~----~~~ie~~~~~~g~~-~~----~lp~et~~~~~~~da~l~G~~~~p~ 96 (359)
.|++++|++|||||||||||+++++||+++ +++++|+++++|++ ++ ++|++++++|+++|++||||+++|.
T Consensus 3 am~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~L~Gavg~P~ 82 (361)
T 3udu_A 3 AMKTYKVAVLAGDGIGPLVMKEALKILTFIAQKYNFSFELNEAKIGGASIDAYGVALSDETLKLCEQSDAILFGSVGGPK 82 (361)
T ss_dssp --CEEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCEEEEEECCCTHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCGG
T ss_pred CCcceeEEEECCCccCHHHHHHHHHHHHHHHHhcCCCEEEEEEeccHHHHHhhCCcCCHHHHHHHHHCCcEEECCcCCCC
Confidence 346799999999999999999999999986 79999999999986 43 8999999999999999999999984
Q ss_pred C----CCcc--cc-hHHHHhhcCcEEEEEEeecCCCCC--CC------cccccEEEEecCCcceEeccceeeeCCEEEEE
Q 018224 97 G----GGVS--SL-NVQLRKELDLYAALVNCFNLPGLP--TR------HQNVDIVVIRENTEGEYSGLEHEVVPGVVESL 161 (359)
Q Consensus 97 ~----~~~~--s~-~~~LR~~ldlyanvRP~~~~pg~~--~~------~~~iDivivREnteG~Y~g~~~~~~~~va~~~ 161 (359)
. ++.+ +. ++.||++||||||+||||++||++ +| ++++|||||||||||+|+|.++.. +++++++
T Consensus 83 ~~~~~~~~~~~~~~~l~LRk~ldLyaNvRP~~~~pg~~~~splk~~~~~~~vD~vivREnTeG~Y~g~~~~~-~~~a~~~ 161 (361)
T 3udu_A 83 WDNLPIDQRPERASLLPLRKHFNLFANLRPCKIYESLTHASPLKNEIIQKGVDILCVRELTGGIYFGKQDLG-KESAYDT 161 (361)
T ss_dssp GTTSCGGGSHHHHHHHHHHHHHTCCEEEEEEECCGGGGGGSSBCHHHHTTCCEEEEEEECSSGGGTSCEEEC-SSEEEEE
T ss_pred cCCCCCCcCccccchHHHHHHcCCEEEEEEeeccCCccccCCCccccccCCCcEEEEcccCCCeecCccCCc-CceEEEE
Confidence 2 2222 23 899999999999999999999995 66 357999999999999999998765 7789999
Q ss_pred EeecHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHhhCCceeeceeeHhHHHHHHHhCCCCccE
Q 018224 162 KVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDV 241 (359)
Q Consensus 162 ~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~eypdI~~~~~~vD~~~~~Lv~~P~~fdV 241 (359)
++|||+++|||+|+||+||++| |+|||+|||+|||+ +++||+++|+||+++||||+++|++||+++||||++|++|||
T Consensus 162 ~~~Tr~~~eRIar~AFe~A~~r-rkkVT~v~KaNvl~-t~glf~~~~~eva~eypdV~~~~~~VD~~am~lv~~P~~FDV 239 (361)
T 3udu_A 162 EIYTKKEIERIARIAFESARIR-KKKVHLIDKANVLA-SSILWREVVANVAKDYQDINLEYMYVDNAAMQIVKNPSIFDV 239 (361)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHT-TSEEEEEECTTTCH-HHHHHHHHHHHHGGGCTTSEEEEEEHHHHHHHHHHCGGGCSE
T ss_pred EeccHHHHHHHHHHHHHHHHHc-CCcEEEEECchhhc-cchHHHHHHHHHHHHCCCCeEEeeeHHHHHHHHHhCcccCcE
Confidence 9999999999999999999998 78999999999996 899999999999999999999999999999999999999999
Q ss_pred EEeCCcchhhHHHhhhhhcCCCCccceeeeCCC-cceEeccccCCCCCcccccccccCChhHHHHHHHHHHhh-cCCHHH
Q 018224 242 MVTPNLYGNLVSNTAAGIAGGTGVMPGGNVGAD-TAVFEQGASAGNVGNEKVVEQKKANPVALLLSSAMMLRH-LQFPSF 319 (359)
Q Consensus 242 iv~~NlfGDILSDlaa~l~GglGl~psanig~~-~a~FEp~~~~~HGsApdiaGk~~ANP~a~Ils~ammL~~-lg~~~~ 319 (359)
|||+|||||||||++|+++||+||+||+|+|++ ++||||+ |||||||||||+|||+|+|||++|||+| ||++++
T Consensus 240 iVt~NlfGDILSD~aa~l~GslGl~pSanig~~~~a~fEpv----HGSAPdIAGk~iANP~A~IlS~amML~~~lg~~~~ 315 (361)
T 3udu_A 240 MLCSNLFGDILSDELAAINGSLGLLSSASLNDKGFGLYEPA----GGSAPDIAHLNIANPIAQILSAALMLKYSFKEEQA 315 (361)
T ss_dssp EEECHHHHHHHHHHHHHHHCCGGGCEEEEECTTSCEEEEES----SCCCGGGTTSSCCCCHHHHHHHHHHHHHTSCCHHH
T ss_pred EEecchhHHHHHHHHHHhcCchhhcceeeeCCCCCeeeecC----CCChhhhcCCCccCCHHHHHHHHHHHHHhCCCHHH
Confidence 999999999999999999999999999999986 5999999 9999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHcCcccCCCCCC--CCcHHHHHHHHHHhc
Q 018224 320 ADRLETAVKRVISEEKYRTKDLGG--GCTTQQIVDAVIANL 358 (359)
Q Consensus 320 A~~i~~Av~~~l~~g~~~T~Dlgg--~~~T~e~~~av~~~l 358 (359)
|++|++||.+++++| ++|+|||| .+||+||+++|+++|
T Consensus 316 A~~Ie~Av~~~l~~g-~~T~DlgG~~~~~T~e~~~aV~~~l 355 (361)
T 3udu_A 316 AQDIENAISLALAQG-KMTKDLNAKSYLNTDEMGDCILEIL 355 (361)
T ss_dssp HHHHHHHHHHHHHTT-CCCTTTCSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CcCcCCCCCCccCHHHHHHHHHHHH
Confidence 999999999999999 79999999 899999999999987
No 7
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A
Probab=100.00 E-value=8.9e-112 Score=838.57 Aligned_cols=323 Identities=34% Similarity=0.532 Sum_probs=300.2
Q ss_pred cceEEEEcCCCCcHHHHHHHHHHHHHc----CCCeeEEEEEecCc-cc----CCcHHHHHHHHhcCceeeccccCCCC--
Q 018224 29 PRAVTLIPGDGIGPLVTNAVEQVMEAM----HAPIYFEKYEVHGD-MK----RVPQQVLDSIRKNKVCLKGGLKTPVG-- 97 (359)
Q Consensus 29 ~~~I~vi~GDGIGpEV~~~a~~vl~~~----~~~ie~~~~~~g~~-~~----~lp~et~~~~~~~da~l~G~~~~p~~-- 97 (359)
+++|++|||||||||||+++++||+++ +++|+|+++++|++ ++ ++|++++++|+++|++||||+++|..
T Consensus 23 ~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~g~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~daiL~Gavg~P~~~~ 102 (390)
T 3u1h_A 23 KKKIAVLPGDGIGPEVMEAAIEVLKAVAERFGHEFEFEYGLIGGAAIDEAGTPLPEETLDVCRGSDAILLGAVGGPKWDQ 102 (390)
T ss_dssp -CEEEEEEESTTHHHHHHHHHHHHHHHHHHHSCCCEEEECCCTHHHHHSSSSSSCHHHHHHHHTSSEEEEEECCCSTTTS
T ss_pred cceEEEECCCccCHHHHHHHHHHHHHHHHhcCCCeEEEEEEcCHHHHHhhCCcCCHHHHHHHHHCCEEEECCcCCCCcCC
Confidence 489999999999999999999999998 89999999999986 43 89999999999999999999999842
Q ss_pred --CC--cccchHHHHhhcCcEEEEEEeecCCCCC--CCc-----ccccEEEEecCCcceEeccceeee---CCEEEEEEe
Q 018224 98 --GG--VSSLNVQLRKELDLYAALVNCFNLPGLP--TRH-----QNVDIVVIRENTEGEYSGLEHEVV---PGVVESLKV 163 (359)
Q Consensus 98 --~~--~~s~~~~LR~~ldlyanvRP~~~~pg~~--~~~-----~~iDivivREnteG~Y~g~~~~~~---~~va~~~~~ 163 (359)
++ +++.++.||++||||||+||||++||++ +|+ +++|||||||||||+|+|.+++.. .++++++++
T Consensus 103 ~~~~~~~~~~ll~LRk~ldLyANvRP~k~~pg~~~~splk~~~~~~vD~vIVREnTeG~Y~g~~~~~~~~g~~~a~~~~~ 182 (390)
T 3u1h_A 103 NPSELRPEKGLLGIRKGLDLFANLRPVKVYDSLADASPLKKEVIEGVDLVIVRELTGGLYFGEPSERYEEGEEAAVDTLL 182 (390)
T ss_dssp SCCSSSSSCCHHHHHHHTTEEEEEEEEECCGGGTTSSSBCHHHHSSCEEEEEEECSSBSCC-------CTTCSEEEEEEE
T ss_pred CCcccCccchHHHHHHHhCCeEEEEEeeccCCccccCCcccccccCCcEEEEeeCCCCeecCccccccCCCCceEEEEEE
Confidence 12 3478999999999999999999999998 777 589999999999999999988753 357999999
Q ss_pred ecHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHhhCCceeeceeeHhHHHHHHHhCCCCccEEE
Q 018224 164 ITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMV 243 (359)
Q Consensus 164 ~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~eypdI~~~~~~vD~~~~~Lv~~P~~fdViv 243 (359)
|||+++|||+|+||+||++| |||||+|||+||| .+||||+++|+||+++||||++++++||++|||||++|++|||||
T Consensus 183 ~Tr~~~eRIar~AFe~A~~r-rkkVT~v~KaNVl-~t~glfr~~~~eva~eYPdV~~~~~~VD~~amqLV~~P~~FDViV 260 (390)
T 3u1h_A 183 YTREEIERIIRKAFELALTR-KKKVTSVDKANVL-ESSRLWREVAEEVAKEYPDVELEHMLVDNAAMQLIRNPRQFDVIV 260 (390)
T ss_dssp EEHHHHHHHHHHHHHHHHTT-TSEEEEEECTTTC-HHHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGCSEEE
T ss_pred ecHHHHhHHHHHHHHHHHHc-CCceEEEECCccc-ccchHHHHHHHHHHhHCCCCeEEeeeHHHHHHHHHhCcccCcEEE
Confidence 99999999999999999998 7899999999999 699999999999999999999999999999999999999999999
Q ss_pred eCCcchhhHHHhhhhhcCCCCccceeeeCCC-cceEeccccCCCCCcccccccccCChhHHHHHHHHHHhh-cCCHHHHH
Q 018224 244 TPNLYGNLVSNTAAGIAGGTGVMPGGNVGAD-TAVFEQGASAGNVGNEKVVEQKKANPVALLLSSAMMLRH-LQFPSFAD 321 (359)
Q Consensus 244 ~~NlfGDILSDlaa~l~GglGl~psanig~~-~a~FEp~~~~~HGsApdiaGk~~ANP~a~Ils~ammL~~-lg~~~~A~ 321 (359)
|+|||||||||++|+++||+||+||+|+|++ ++||||+ |||||||||||+|||+|+|||++|||+| ||++++|+
T Consensus 261 t~NlfGDILSD~aA~l~GslGl~pSanig~~~~a~fEpv----HGSAPDIAGk~iANP~A~IlS~amML~~~lg~~~~A~ 336 (390)
T 3u1h_A 261 TENMFGDILSDEASMITGSLGMLPSASLSTDGLGLYEPV----HGSAPDIAGKGIANPLATILSAAMMLRYSFGLEEEAK 336 (390)
T ss_dssp ECHHHHHHHHHHHHHHHSCTTTCEEEEEETTSCEEEEES----SCCCTTTTTSSCSCTHHHHHHHHHHHHHHHCCHHHHH
T ss_pred ecccchHHHHHHHHHhcCchhhcceeeecCCCCeeEecC----CCChhhhcCCCcCCcHHHHHHHHHHHHHhCCCHHHHH
Confidence 9999999999999999999999999999985 7999999 9999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHcCcccCCCC--CC--CCcHHHHHHHHHHhc
Q 018224 322 RLETAVKRVISEEKYRTKDL--GG--GCTTQQIVDAVIANL 358 (359)
Q Consensus 322 ~i~~Av~~~l~~g~~~T~Dl--gg--~~~T~e~~~av~~~l 358 (359)
+|++||.+++++| ++|+|| || .+||+||+++|+++|
T Consensus 337 ~Ie~AV~~vl~~G-~~T~Dl~~gG~~~~~T~e~~daV~~~l 376 (390)
T 3u1h_A 337 AIEKAVEKVLAEG-YRTADIAKPGGKYVSTTEMTDEVKAAV 376 (390)
T ss_dssp HHHHHHHHHHHHT-CCBTTTSCSSCCCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CcChhhccCCCCccCHHHHHHHHHHHH
Confidence 9999999999999 799999 66 899999999999987
No 8
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus}
Probab=100.00 E-value=2e-111 Score=854.62 Aligned_cols=328 Identities=42% Similarity=0.661 Sum_probs=318.4
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEecCc-c-----cCCcHHHHHHHHhcCceeeccccCCCCCCcc
Q 018224 28 SPRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGD-M-----KRVPQQVLDSIRKNKVCLKGGLKTPVGGGVS 101 (359)
Q Consensus 28 ~~~~I~vi~GDGIGpEV~~~a~~vl~~~~~~ie~~~~~~g~~-~-----~~lp~et~~~~~~~da~l~G~~~~p~~~~~~ 101 (359)
++++|++|||||||||||+++++||++++++++|+++++|.+ + +++|++++++|+++|++||||+++|..++++
T Consensus 18 g~~~IavipGDGIGpEV~~~a~~VL~a~~~~ie~~~~~~G~~~~~~~G~~~lp~etle~ik~~daiLkGavgtP~~~~~~ 97 (496)
T 2d1c_A 18 GRKLITVIPGDGIGPECVEATLKVLEAAKAPLAYEVREAGASVFRRGIASGVPQETIESIRKTRVVLKGPLETPVGYGEK 97 (496)
T ss_dssp SCEEEEEECCSTTHHHHHHHHHHHHHHTTCCEEEEECCCSHHHHTTTCTTSCCHHHHHHHHHHCEEEECCCCCCSSSSSC
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEecCHHHHhccCCCcCcHHHHHHHHHCCEEEECCccCCCccccc
Confidence 369999999999999999999999999999999999999976 4 3799999999999999999999999877788
Q ss_pred cchHHHHhhcCcEEEEEEeecCCCCCCCc--ccccEEEEecCCcceEeccceeeeCCEEEEEEeecHHHHHHHHHHHHHH
Q 018224 102 SLNVQLRKELDLYAALVNCFNLPGLPTRH--QNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEY 179 (359)
Q Consensus 102 s~~~~LR~~ldlyanvRP~~~~pg~~~~~--~~iDivivREnteG~Y~g~~~~~~~~va~~~~~~Tr~~~eRiar~AFe~ 179 (359)
|+|++||+.||||+|+|||+++||+++|+ +++|+|||||||||+|+|.+++..+++++++++|||+++|||+|+||+|
T Consensus 98 s~~l~LRk~LdLyaNlRP~k~~pgl~splk~~~vD~vIVREnTEG~Y~G~e~~~~~~va~~~~v~Tr~~ieRIar~AFe~ 177 (496)
T 2d1c_A 98 SANVTLRKLFETYANVRPVREFPNVPTPYAGRGIDLVVVRENVEDLYAGIEHMQTPSVAQTLKLISWKGSEKIVRFAFEL 177 (496)
T ss_dssp CHHHHHHHHTTCCEEEEEEECBTTBCCTTTTSCCEEEEEEECSSBGGGCCEEEEETTEEEEEEEEEHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhCCEEEEEEEeecCCCCccccCCCccEEEEeeCcCceEeceeEecCCCeEEEEEEecHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 7899999999999999999988888999999999999999999999999
Q ss_pred HHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHhhCCceeeceeeHhHHHHHHHhCCCCccEEEeCCcchhhHHHhhhhh
Q 018224 180 AYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGI 259 (359)
Q Consensus 180 A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~eypdI~~~~~~vD~~~~~Lv~~P~~fdViv~~NlfGDILSDlaa~l 259 (359)
|++|+|++||+|||+|||+.+||+|+++|+||+++||||+++|++||+|+||||++|++||||||+|||||||||++|++
T Consensus 178 A~~r~rkkVT~V~KaNVlk~sdGlfr~v~~eVa~eYPdI~~e~~~VD~~amqLV~~P~~FDVIVt~NLfGDILSDlaA~l 257 (496)
T 2d1c_A 178 ARAEGRKKVHCATKSNIMKLAEGTLKRAFEQVAQEYPDIEAVHIIVDNAAHQLVKRPEQFEVIVTTNMNGDILSDLTSGL 257 (496)
T ss_dssp HHHTTCCEEEEEECTTTCTTHHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHTT
T ss_pred HHhcCCCcEEEEECCCchhhHHHHHHHHHHHHHHHCCCceEEEEeHHHHHHHHhhCcCcceEEEECCcchHHHHHHHHHh
Confidence 99998899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccceeeeCCCcceEeccccCCCCCcccccccccCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHcCcccCC
Q 018224 260 AGGTGVMPGGNVGADTAVFEQGASAGNVGNEKVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEEKYRTK 339 (359)
Q Consensus 260 ~GglGl~psanig~~~a~FEp~~~~~HGsApdiaGk~~ANP~a~Ils~ammL~~lg~~~~A~~i~~Av~~~l~~g~~~T~ 339 (359)
+||+||+||+|+|++.+||||+ |||||||||||+|||+|+|||++|||+|||+.++|++|++||.+++++|+++|+
T Consensus 258 ~GslGlapSanig~~~a~FEpv----HGSAPDIAGk~iANP~A~IlSaamML~hlG~~~~A~~Ie~AV~~vl~~G~~~T~ 333 (496)
T 2d1c_A 258 IGGLGFAPSANIGNEVAIFEAV----HGSAPKYAGKNVINPTAVLLSAVMMLRYLEEFATADLIENALLYTLEEGRVLTG 333 (496)
T ss_dssp TTCGGGCEEEEECSSCEEEEES----SCCCTTTTTSSCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTSSCBH
T ss_pred cCCcccCcEEEECCCCceeeCC----CCchhhhcCCCccCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHcCCeecc
Confidence 9999999999999999999999 999999999999999999999999999999999999999999999999988999
Q ss_pred CCCC---CCcHHHHHHHHHHhcC
Q 018224 340 DLGG---GCTTQQIVDAVIANLD 359 (359)
Q Consensus 340 Dlgg---~~~T~e~~~av~~~l~ 359 (359)
|||| .+||+||+|+|+++|+
T Consensus 334 DLgg~~~~~sT~e~~daV~~~L~ 356 (496)
T 2d1c_A 334 DVVGYDRGAKTTEYTEAIIQNLG 356 (496)
T ss_dssp HHHCTTTCBCHHHHHHHHHHTTT
T ss_pred ccCCCCCCcCHHHHHHHHHHHHh
Confidence 9999 8999999999999873
No 9
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1
Probab=100.00 E-value=1.3e-111 Score=826.45 Aligned_cols=319 Identities=38% Similarity=0.643 Sum_probs=308.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHHc----CCCeeEEEEEecCc-cc----CCcHHHHHHHHhcCceeeccccCCCCCCc
Q 018224 30 RAVTLIPGDGIGPLVTNAVEQVMEAM----HAPIYFEKYEVHGD-MK----RVPQQVLDSIRKNKVCLKGGLKTPVGGGV 100 (359)
Q Consensus 30 ~~I~vi~GDGIGpEV~~~a~~vl~~~----~~~ie~~~~~~g~~-~~----~lp~et~~~~~~~da~l~G~~~~p~~~~~ 100 (359)
++|++|||||||||||+++++||+++ +++++|+++++|.+ ++ ++|++++++|+++|++||||+++|..
T Consensus 2 ~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~g~~lp~~t~~~~~~~da~l~Gav~tP~~--- 78 (336)
T 1wpw_A 2 FTVALIQGDGIGPEIVSKSKRILAKINELYSLPIEYIEVEAGDRALARYGEALPKDSLKIIDKADIILKGPVGESAA--- 78 (336)
T ss_dssp EEEEEECCSTTHHHHHHHHHHHHHHHHHHTTCCEEEEEECCSHHHHHHSSSSSCHHHHHHHHTCSEEEECCCCTTHH---
T ss_pred cEEEEECCCCcCHHHHHHHHHHHHHHHHhhCCCeEEEEEecchHHHHhhCCcCCHHHHHHHHHCCEEEECCcCCCCc---
Confidence 78999999999999999999999998 89999999999976 43 89999999999999999999999842
Q ss_pred ccchHHHHhhcCcEEEEEEeecCCCCCCCcccccEEEEecCCcceEeccceeeeCCEEEEEEeecHHHHHHHHHHHHHHH
Q 018224 101 SSLNVQLRKELDLYAALVNCFNLPGLPTRHQNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYA 180 (359)
Q Consensus 101 ~s~~~~LR~~ldlyanvRP~~~~pg~~~~~~~iDivivREnteG~Y~g~~~~~~~~va~~~~~~Tr~~~eRiar~AFe~A 180 (359)
.+|++||+.||||+|+|||+++||+++|++++|+|||||||||+|+|.+++..+++++++++|||+++|||+|+||+||
T Consensus 79 -~~~l~lR~~ldlyan~RP~~~~pg~~~~~~~~D~vivREnteg~Y~g~~~~~~~~va~~~~~~T~~~~eRiar~AF~~A 157 (336)
T 1wpw_A 79 -DVVVKLRQIYDMYANIRPAKSIPGIDTKYGNVDILIVRENTEDLYKGFEHIVSDGVAVGMKIITRFASERIAKVGLNFA 157 (336)
T ss_dssp -HHHHHHHHTTTCCEEEEEEECCTTTCCSCSCCEEEEEEECSSBTTTCCEEEEETTEEEEEEEEEHHHHHHHHHHHHHHH
T ss_pred -chHHHHHHHhCCEEEEEEEeccCCCCCCCCCCcEEEEecCccCeEcCCccccCCCeEEEEEEecHHHHHHHHHHHHHHH
Confidence 3899999999999999999999999999999999999999999999999887889999999999999999999999999
Q ss_pred HhcCCCcEEEEEcCCchhhchHHHHHHHHHHHhhCCceeeceeeHhHHHHHHHhCCCCccEEEeCCcchhhHHHhhhhhc
Q 018224 181 YLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIA 260 (359)
Q Consensus 181 ~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~eypdI~~~~~~vD~~~~~Lv~~P~~fdViv~~NlfGDILSDlaa~l~ 260 (359)
++| |+|||+|||+|||+.+||+|+++|+||+++ ||+++|++||+|+||||++|++||||||+|||||||||++|+++
T Consensus 158 ~~r-rkkvt~v~KaNvlk~t~glf~~~~~eva~~--~I~~~~~~vD~~~~~lv~~P~~FDVivt~NlfGDIlSD~aa~l~ 234 (336)
T 1wpw_A 158 LRR-RKKVTCVHKANVMRITDGLFAEACRSVLKG--KVEYSEMYVDAAAANLVRNPQMFDVIVTENVYGDILSDEASQIA 234 (336)
T ss_dssp HTT-TSEEEEEECTTTCTTHHHHHHHHHHHHHTT--TSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHH
T ss_pred HHh-CCeEEEEECCcchhhhhHHHHHHHHHHHHh--CceeEEEeHHHHHHHHhhCcccceEEEEcCcchHHHHHHHHHhc
Confidence 998 889999999999999999999999999998 99999999999999999999999999999999999999999999
Q ss_pred CCCCccceeeeCCCcceEeccccCCCCCcccccccccCChhHHHHHHHHHHhhcCC-------HHHHHHHHHHHHHHHHc
Q 018224 261 GGTGVMPGGNVGADTAVFEQGASAGNVGNEKVVEQKKANPVALLLSSAMMLRHLQF-------PSFADRLETAVKRVISE 333 (359)
Q Consensus 261 GglGl~psanig~~~a~FEp~~~~~HGsApdiaGk~~ANP~a~Ils~ammL~~lg~-------~~~A~~i~~Av~~~l~~ 333 (359)
||+||+||+|+|++.+||||+ |||||||||||+|||+|+|||++|||+|||+ +++|++|++||.+++++
T Consensus 235 GslGl~pSanig~~~a~fEp~----HGSApdiaGk~iANP~A~IlS~ammL~~lg~~d~~~~~~~~A~~Ie~Av~~~l~~ 310 (336)
T 1wpw_A 235 GSLGIAPSANIGDKKALFEPV----HGAAFDIAGKNIGNPTAFLLSVSMMYERMYELSNDDRYIKASRALENAIYLVYKE 310 (336)
T ss_dssp TCGGGCEEEEECSSCEEEEES----SCCCTTTTTSSCCCTHHHHHHHHHHHHHHHHTTCCTHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccceEEECCCCceEeCC----CCCchhhCCCCCcCcHHHHHHHHHHHHHcCccccccchHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999 9999999999999999999999999999999 99999999999999999
Q ss_pred CcccCCCCCCCCcHHHHHHHHHHhcC
Q 018224 334 EKYRTKDLGGGCTTQQIVDAVIANLD 359 (359)
Q Consensus 334 g~~~T~Dlgg~~~T~e~~~av~~~l~ 359 (359)
|+++|+||||++||+||+|+|+++|.
T Consensus 311 g~~~T~DlgG~~~T~e~~dav~~~l~ 336 (336)
T 1wpw_A 311 RKALTPDVGGNATTDDLINEIYNKLG 336 (336)
T ss_dssp CSSCCGGGTCCCCHHHHHHHHHHSCC
T ss_pred CCccCCccCCCCCHHHHHHHHHHhhC
Confidence 98799999999999999999999873
No 10
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vml_A* 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A*
Probab=100.00 E-value=1.8e-111 Score=834.80 Aligned_cols=325 Identities=31% Similarity=0.485 Sum_probs=304.4
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHHHHHc----CCCeeEEEEEecCc-cc----CCcHHHHHHHHhcCceeeccccCCCC
Q 018224 27 GSPRAVTLIPGDGIGPLVTNAVEQVMEAM----HAPIYFEKYEVHGD-MK----RVPQQVLDSIRKNKVCLKGGLKTPVG 97 (359)
Q Consensus 27 ~~~~~I~vi~GDGIGpEV~~~a~~vl~~~----~~~ie~~~~~~g~~-~~----~lp~et~~~~~~~da~l~G~~~~p~~ 97 (359)
++.|+|++|||||||||||+++++||+++ +++++|+++++|++ ++ ++|++|+++|+++|++||||+++|..
T Consensus 11 ~~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~g~~~~~~~~~~G~~~~~~~G~~lp~etl~~~~~~da~L~Gavg~P~~ 90 (375)
T 3vmk_A 11 GSSYQIAVLAGDGIGPEVMAEARKVLAAVEKRFDLSIEYSEYDVGGAAIDNHGCPLPEATLKGCEAADAVLFGSVGGPKW 90 (375)
T ss_dssp TSCEEEEEEEESTTHHHHHHHHHHHHHHHHHHTTCCEEEEECCCTHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCGGG
T ss_pred CCcceEEEECCCcccHHHHHHHHHHHHHHHHhcCCCEEEEEEECCHHHHHhhCCcCCHHHHHHHHHCCeEEECCcCCCCc
Confidence 46799999999999999999999999996 79999999999987 43 89999999999999999999999852
Q ss_pred ----CCc---ccchHHHHhhcCcEEEEEEeecCCCCC--CCc------ccccEEEEecCCcceEeccceeee----CCEE
Q 018224 98 ----GGV---SSLNVQLRKELDLYAALVNCFNLPGLP--TRH------QNVDIVVIRENTEGEYSGLEHEVV----PGVV 158 (359)
Q Consensus 98 ----~~~---~s~~~~LR~~ldlyanvRP~~~~pg~~--~~~------~~iDivivREnteG~Y~g~~~~~~----~~va 158 (359)
+.. +++|++||+.||||||+||||++||++ +|+ +++|||||||||||+|+|.++... ++++
T Consensus 91 ~~~~~~~~~~~~~~l~LRk~ldLyaNvRP~~~~pg~~~~splk~~~~~~~vD~vIvREnTeG~Y~g~~~~~~~~~~~~~a 170 (375)
T 3vmk_A 91 EHLPPNDQPERGALLPLRGHFELFCNMRPAKLHPGLEHMSPLRSDISEKGFDILCVRELTGGIYFGKPKGRQGEGENEEA 170 (375)
T ss_dssp TTSCSTTSHHHHHHHHHHHHTTCCEEEEEEECCTTCGGGSSBCHHHHTTCCEEEEEEECSSBTTTCSSCEEECCGGGCEE
T ss_pred cCCCccccccccchHHHHHHcCCeEEEEEEeccCCCcccCCCCcccccCCCCEEEEeeCCCCEecCCccccccCCCCceE
Confidence 111 244899999999999999999999996 664 589999999999999999987652 4689
Q ss_pred EEEEeecHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHhhCCceeeceeeHhHHHHHHHhCCCC
Q 018224 159 ESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQ 238 (359)
Q Consensus 159 ~~~~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~eypdI~~~~~~vD~~~~~Lv~~P~~ 238 (359)
+++++|||+++|||+|+||+||++| |+|||+|||+|||+ +++||+++|+||+++||||++++++||++|||||++|++
T Consensus 171 ~~~~~~Tr~~~eRIar~AFe~A~~r-rkkVT~v~KaNvl~-~~glf~~~~~eva~eypdV~~~~~~VD~~am~lv~~P~~ 248 (375)
T 3vmk_A 171 FDTMRYSRKEIRRIAKIAFESAQGR-RKKVTSVDKANVLA-CSVLWREVVEEVAKDYPDVELEHIYIDNATMQLLRRPNE 248 (375)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHHTT-TSEEEEEECTTTCH-HHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGG
T ss_pred EEEEEEcHHHHHHHHHHHHHHHHHc-CCcEEEEECchhhh-hhhHHHHHHHHHHHHCCCceEeeeeHHHHHHHHHhCccc
Confidence 9999999999999999999999998 78999999999998 569999999999999999999999999999999999999
Q ss_pred ccEEEeCCcchhhHHHhhhhhcCCCCccceeeeCCCc-ceEeccccCCCCCcccccccccCChhHHHHHHHHHHhh-cCC
Q 018224 239 FDVMVTPNLYGNLVSNTAAGIAGGTGVMPGGNVGADT-AVFEQGASAGNVGNEKVVEQKKANPVALLLSSAMMLRH-LQF 316 (359)
Q Consensus 239 fdViv~~NlfGDILSDlaa~l~GglGl~psanig~~~-a~FEp~~~~~HGsApdiaGk~~ANP~a~Ils~ammL~~-lg~ 316 (359)
||||||+|||||||||++|+++||+||+||+|+|++. +||||+ |||||||||||+|||+|+|||++|||+| ||+
T Consensus 249 FDViVt~NlfGDILSD~aa~l~GslGl~pSanig~~~~a~fEpv----HGSAPdIAGk~iANP~A~IlS~amML~~~lg~ 324 (375)
T 3vmk_A 249 FDVMLCSNLFGDIVSDEIAMLTGSMGLLASISMNSQGFGMYEPA----GGSAPDIAGQGIANPVAQILSAALLLRHSLKL 324 (375)
T ss_dssp CSEEEECHHHHHHHHHHHHHHHTCGGGCEEEEECTTSCEEEEES----SCCCTTTTTSSCSCCHHHHHHHHHHHHHTTCC
T ss_pred CcEEEECchhHHHHHHHHHHhcCCccccceeeeCCCCceEEecC----CCCchhccCCCccCcHHHHHHHHHHHHHHCCC
Confidence 9999999999999999999999999999999999885 999999 9999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHHHcCcccCCCC-C---C--CCcHHHHHHHHHHhc
Q 018224 317 PSFADRLETAVKRVISEEKYRTKDL-G---G--GCTTQQIVDAVIANL 358 (359)
Q Consensus 317 ~~~A~~i~~Av~~~l~~g~~~T~Dl-g---g--~~~T~e~~~av~~~l 358 (359)
.++|++|++||.+++++| ++|+|| | | .+||+||+++|+++|
T Consensus 325 ~~~A~~Ie~AV~~~l~~G-~~T~Dl~g~~~G~~~~~T~e~~~aV~~~l 371 (375)
T 3vmk_A 325 EDAALAIEAAVSKALSDG-YLTCELLPASERSQAKSTSQMGDYIAQAI 371 (375)
T ss_dssp HHHHHHHHHHHHHHHHTT-CCCGGGSCGGGGGGCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcC-CCCchhccCCCCCCccCHHHHHHHHHHHH
Confidence 999999999999999999 699999 5 6 899999999999987
No 11
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A
Probab=100.00 E-value=1.3e-111 Score=832.29 Aligned_cols=322 Identities=32% Similarity=0.519 Sum_probs=304.6
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHHHHHc----CCCeeEEEEEecCc-cc----CCcHHHHHHHHhcCceeeccccCCCCC
Q 018224 28 SPRAVTLIPGDGIGPLVTNAVEQVMEAM----HAPIYFEKYEVHGD-MK----RVPQQVLDSIRKNKVCLKGGLKTPVGG 98 (359)
Q Consensus 28 ~~~~I~vi~GDGIGpEV~~~a~~vl~~~----~~~ie~~~~~~g~~-~~----~lp~et~~~~~~~da~l~G~~~~p~~~ 98 (359)
++++|++|||||||||||+++++||+++ +++++|+++++|++ ++ ++|++++++|+++|++||||+++|...
T Consensus 2 ~~~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~l~Gavg~P~~~ 81 (359)
T 2y3z_A 2 ASMKVAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVEEAEAVLLGSVGGPKWD 81 (359)
T ss_dssp -CEEEEEECCSTTHHHHHHHHHHHHHHHHHHHTCCEEEEECCCTHHHHHHHSSSSCHHHHHHHHHSSEEEECCCCCGGGT
T ss_pred CccEEEEECCCCcCHHHHHHHHHHHHHHHHhcCCCeEEEEEeccHHHHHhhCCcCCHHHHHHHHHCCEEEEccccCCccc
Confidence 3589999999999999999999999997 79999999999986 43 899999999999999999999999421
Q ss_pred -------CcccchHHHHhhcCcEEEEEEeecCCCCC--CCc-----ccccEEEEecCCcceEeccceeeeCCEEEEEEee
Q 018224 99 -------GVSSLNVQLRKELDLYAALVNCFNLPGLP--TRH-----QNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVI 164 (359)
Q Consensus 99 -------~~~s~~~~LR~~ldlyanvRP~~~~pg~~--~~~-----~~iDivivREnteG~Y~g~~~~~~~~va~~~~~~ 164 (359)
.+++ |+.||+.||||+|+|||+++||+. +|+ +++|||||||||||+|+|.++...+++++++++|
T Consensus 82 ~~~~~~~~~~~-~l~LR~~ldlyanvRP~~~~pgl~~~splk~~~~~~iD~vivREnteg~Y~g~e~~~~~~~a~~~~~~ 160 (359)
T 2y3z_A 82 GLPRKIRPETG-LLSLRKSQDLFANLRPAKVFPGLERLSPLKEEIARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERY 160 (359)
T ss_dssp TSCGGGCHHHH-HHHHHHHTTEEEEEEEEECCTTCGGGSSSCHHHHTTCEEEEEEECSCSTTTCSSCEECSSCEECCCCC
T ss_pred cCCcccccchh-HHHHHHHhCCEEEEEEeeccCCCCCCCCcccccCCCceEEEEecCccceEecCCCcCCCceEEEEEEE
Confidence 1234 899999999999999999999984 665 4799999999999999999876666789999999
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHhhCCceeeceeeHhHHHHHHHhCCCCccEEEe
Q 018224 165 TKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVT 244 (359)
Q Consensus 165 Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~eypdI~~~~~~vD~~~~~Lv~~P~~fdViv~ 244 (359)
||+++|||+|+||+||++| |++||+|||+|||+ +++||+++|+||+++||||+++|++||+++||||++|++||||||
T Consensus 161 T~~~~eRIar~AFe~A~~r-rkkVt~v~KaNvlk-~~~lf~~~~~eva~eypdI~~~~~~VD~~~mqlv~~P~~FDVivt 238 (359)
T 2y3z_A 161 SKPEVERVARVAFEAARKR-RKHVVSVDKANVLE-VGEFWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVT 238 (359)
T ss_dssp CHHHHHHHHHHHHHHHHTT-TSEEEEEECTTTCH-HHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGCSEEEE
T ss_pred cHHHHHHHHHHHHHHHHHc-CCeEEEEECCcccc-ccHHHHHHHHHHHHHCCcEEEEeeEHHHHHHHHhhCcccccEEEE
Confidence 9999999999999999998 78999999999999 899999999999999999999999999999999999999999999
Q ss_pred CCcchhhHHHhhhhhcCCCCccceeeeCCCcceEeccccCCCCCcccccccccCChhHHHHHHHHHHhh-cCCHHHHHHH
Q 018224 245 PNLYGNLVSNTAAGIAGGTGVMPGGNVGADTAVFEQGASAGNVGNEKVVEQKKANPVALLLSSAMMLRH-LQFPSFADRL 323 (359)
Q Consensus 245 ~NlfGDILSDlaa~l~GglGl~psanig~~~a~FEp~~~~~HGsApdiaGk~~ANP~a~Ils~ammL~~-lg~~~~A~~i 323 (359)
+|||||||||++|+++||+||+||+|+|++.+||||+ |||||||||||+|||+|+|||++|||+| ||+.++|++|
T Consensus 239 ~NlfGDILSD~aa~l~GslGl~pSanig~~~~~fEpv----HGSAPdiAGk~iANP~A~IlS~ammL~~slg~~~~A~~I 314 (359)
T 2y3z_A 239 GNIFGDILSDLASVLPGSLGLLPSASLGRGTPVFEPV----HGSAPDIAGKGIANPTAAILSAAMMLEHAFGLVELARKV 314 (359)
T ss_dssp CHHHHHHHHHHHHTTTSCGGGCEEEEEESSCCEEEES----SCCCGGGTTSSCSCTHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred cCcchHHHHHHHHHhcCcccccceeEeCCCCceeecC----CCChhhhCCCCCcCCHHHHHHHHHHHHHhcCChHHHHHH
Confidence 9999999999999999999999999999988899999 9999999999999999999999999999 9999999999
Q ss_pred HHHHHHHHHcCcccCCCCCCCCcHHHHHHHHHHhc
Q 018224 324 ETAVKRVISEEKYRTKDLGGGCTTQQIVDAVIANL 358 (359)
Q Consensus 324 ~~Av~~~l~~g~~~T~Dlgg~~~T~e~~~av~~~l 358 (359)
++||.+++++| +|+||||++||+||+|+|+++|
T Consensus 315 e~Av~~~l~~g--~T~Dlgg~~~T~e~~daV~~~l 347 (359)
T 2y3z_A 315 EDAVAKALLET--PPPDLGGSAGTEAFTATVLRHL 347 (359)
T ss_dssp HHHHHHHHHHS--CCGGGTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC--CCCccCCCCCHHHHHHHHHHHH
Confidence 99999999999 7999999999999999999987
No 12
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1
Probab=100.00 E-value=1.9e-111 Score=832.48 Aligned_cols=322 Identities=32% Similarity=0.483 Sum_probs=305.9
Q ss_pred cceEEEEcCCCCcHHHHHHHHHHHHHc----CCCeeEEEEEecCc-cc----CCcHHHHHHHHhcCceeeccccCCCCC-
Q 018224 29 PRAVTLIPGDGIGPLVTNAVEQVMEAM----HAPIYFEKYEVHGD-MK----RVPQQVLDSIRKNKVCLKGGLKTPVGG- 98 (359)
Q Consensus 29 ~~~I~vi~GDGIGpEV~~~a~~vl~~~----~~~ie~~~~~~g~~-~~----~lp~et~~~~~~~da~l~G~~~~p~~~- 98 (359)
..+|++|||||||||||+++++||+++ +++++|+++++|++ ++ ++|++++++|+++|++||||+++|...
T Consensus 12 ~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~L~Gavg~P~~~~ 91 (366)
T 1vlc_A 12 HMKIAVLPGDGIGPEVVREALKVLEVVEKKTGKTFEKVFGHIGGDAIDRFGEPLPEETKKICLEADAIFLGSVGGPKWDD 91 (366)
T ss_dssp EEEEEEEEESTHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCTHHHHHHHSSSSCHHHHHHHHHSSEEEEEECCCGGGTT
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHhhCCcCCHHHHHHHHHCCEEEECCccCCcccc
Confidence 468999999999999999999999998 99999999999986 43 899999999999999999999999521
Q ss_pred ---Cc--ccc-hHHHHhhcCcEEEEEEeecCCCCC--CCc------ccccEEEEecCCcceEeccceeeeCCEEEEEEee
Q 018224 99 ---GV--SSL-NVQLRKELDLYAALVNCFNLPGLP--TRH------QNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVI 164 (359)
Q Consensus 99 ---~~--~s~-~~~LR~~ldlyanvRP~~~~pg~~--~~~------~~iDivivREnteG~Y~g~~~~~~~~va~~~~~~ 164 (359)
.. .+. |+.||+.||||+|+|||+++||++ +|+ +++|||||||||||+|+|.+++..+++++++++|
T Consensus 92 ~~~~~r~~~~~~l~LRk~ldlyaN~RP~~~~pgl~~~splk~~~~~~~vDivIvREnteG~Y~g~~~~~~~~~a~~~~~~ 171 (366)
T 1vlc_A 92 LPPEKRPEIGGLLALRKMLNLYANIRPIKVYRSLVHVSPLKEKVIGSGVDLVTVRELSYGVYYGQPRGLDEEKGFDTMIY 171 (366)
T ss_dssp SCSTTSHHHHTHHHHHHHTTCCEEEEEEECCGGGGGGSSSCHHHHTTCCEEEEEEECSSGGGTEEEEEECSSCEEEECCC
T ss_pred CCcccCcccchhHHHHHHhCCEEEEEEccccCCCCCcCCCcccccCCCceEEEEEeCCCCeecCCccccCCCeEEEEEEE
Confidence 11 144 999999999999999999999997 576 5699999999999999999988778899999999
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHhhCCceeeceeeHhHHHHHHHhCCCCccEEEe
Q 018224 165 TKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVT 244 (359)
Q Consensus 165 Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~eypdI~~~~~~vD~~~~~Lv~~P~~fdViv~ 244 (359)
||+++|||+|+||+||++| |+|||+|||+|||+ ++|||+++|+||+++||||+++|++||+++||||++|++||||||
T Consensus 172 Tr~~~eRIar~AFe~A~~r-rkkVt~v~KaNvlk-t~glf~~~~~eva~eypdV~~~~~~VD~~~mqlv~~P~~FDVivt 249 (366)
T 1vlc_A 172 DRKTVERIARTAFEIAKNR-RKKVTSVDKANVLY-SSMLWRKVVNEVAREYPDVELTHIYVDNAAMQLILKPSQFDVILT 249 (366)
T ss_dssp CHHHHHHHHHHHHHHHHTT-TSEEEEEECTTTCH-HHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGCSEEEE
T ss_pred cHHHHHHHHHHHHHHHHHc-CCeEEEEECCcccc-cchHHHHHHHHHHHHCCCceEEeeeHHHHHHHHhhCcccceEEEE
Confidence 9999999999999999998 88999999999999 999999999999999999999999999999999999999999999
Q ss_pred CCcchhhHHHhhhhhcCCCCccceeeeCCCcceEeccccCCCCCcccccccccCChhHHHHHHHHHHhh-cCCHHHHHHH
Q 018224 245 PNLYGNLVSNTAAGIAGGTGVMPGGNVGADTAVFEQGASAGNVGNEKVVEQKKANPVALLLSSAMMLRH-LQFPSFADRL 323 (359)
Q Consensus 245 ~NlfGDILSDlaa~l~GglGl~psanig~~~a~FEp~~~~~HGsApdiaGk~~ANP~a~Ils~ammL~~-lg~~~~A~~i 323 (359)
+|||||||||++|+++||+||+||+|+| +.+||||+ |||||||||||+|||+|+|||++|||+| ||++++|++|
T Consensus 250 ~NlfGDILSD~aa~l~GslGl~pSanig-~~alfEpv----HGSAPdIAGk~iANP~A~IlS~ammL~~slg~~~~A~~I 324 (366)
T 1vlc_A 250 TNMFGDILSDESAALPGSLGLLPSASFG-DKNLYEPA----GGSAPDIAGKNIANPIAQILSLAMMLEHSFGMVEEARKI 324 (366)
T ss_dssp CHHHHHHHHHHHTTSSSCGGGCEEEEES-SSEEEEES----SCCCTTTTTTTCSCCHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred cchhHHHHHHHHHHhcCccccccEeeeC-CceeeecC----CCchhhcCCCCccCcHHHHHHHHHHHHHHcCChhHHHHH
Confidence 9999999999999999999999999999 78999999 9999999999999999999999999999 9999999999
Q ss_pred HHHHHHHHHcCcccCCCCC---CC-CcHHHHHHHHHHhc
Q 018224 324 ETAVKRVISEEKYRTKDLG---GG-CTTQQIVDAVIANL 358 (359)
Q Consensus 324 ~~Av~~~l~~g~~~T~Dlg---g~-~~T~e~~~av~~~l 358 (359)
++||.+++++| ++|+||| |+ +||+||+|+|+++|
T Consensus 325 e~Av~~~l~~g-~~T~Dlg~~gg~~~~T~e~~daV~~~l 362 (366)
T 1vlc_A 325 ERAVELVIEEG-YRTRDIAEDPEKAVSTSQMGDLICKKL 362 (366)
T ss_dssp HHHHHHHHHTT-CCCGGGCSSGGGCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CcccccccCCCCCcCHHHHHHHHHHHH
Confidence 99999999999 8999998 67 99999999999987
No 13
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A
Probab=100.00 E-value=8.1e-111 Score=828.83 Aligned_cols=324 Identities=31% Similarity=0.494 Sum_probs=303.9
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHHHHHc----CCCeeEEEEEecCc-cc----CCcHHHHHHHHhcCceeeccccCCCCC
Q 018224 28 SPRAVTLIPGDGIGPLVTNAVEQVMEAM----HAPIYFEKYEVHGD-MK----RVPQQVLDSIRKNKVCLKGGLKTPVGG 98 (359)
Q Consensus 28 ~~~~I~vi~GDGIGpEV~~~a~~vl~~~----~~~ie~~~~~~g~~-~~----~lp~et~~~~~~~da~l~G~~~~p~~~ 98 (359)
++++|++|||||||||||+++++||+++ +++++|+++++|++ ++ ++|++++++|+++|++||||+++|...
T Consensus 3 ~~~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~L~Gavg~p~~~ 82 (363)
T 1cnz_A 3 KNYHIAVLPGDGIGPEVMAQALKVMDAVRSRFDMRITTSHYDVGGIAIDNHGHPLPKATVEGCEQADAILFGSVGGPKWE 82 (363)
T ss_dssp CCEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCCEEEEECCCTHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCGGGT
T ss_pred CccEEEEeCCCCcCHHHHHHHHHHHHHHHHhcCCceEEEEEeCChHHHhhcCCcCcHHHHHHHHHCCEEEEccccCCccc
Confidence 4589999999999999999999999998 79999999999986 43 899999999999999999999998421
Q ss_pred -------CcccchHHHHhhcCcEEEEEEeecCCCCC--CCc------ccccEEEEecCCcceEeccceee----eCCEEE
Q 018224 99 -------GVSSLNVQLRKELDLYAALVNCFNLPGLP--TRH------QNVDIVVIRENTEGEYSGLEHEV----VPGVVE 159 (359)
Q Consensus 99 -------~~~s~~~~LR~~ldlyanvRP~~~~pg~~--~~~------~~iDivivREnteG~Y~g~~~~~----~~~va~ 159 (359)
.+++++++||+.||||+|+|||+++||+. +|+ +++|||||||||||+|+|.++.. .+++++
T Consensus 83 ~~~~~~~~e~~~~l~LR~~ldlyanvRP~~~~pgl~~~splk~~~~~~~vDivivREnteg~Y~g~~~~~~~~~~~~~a~ 162 (363)
T 1cnz_A 83 NLPPESQPERGALLPLRKHFKLFSNLRPAKLYQGLEAFCPLRADIAANGFDILCVRELTGGIYFGQPKGREGSGQYEKAF 162 (363)
T ss_dssp TSCGGGSTTHHHHHHHHHHHTCCEEEEEEECCTTCGGGCSBCHHHHHHCCEEEEEEECSSGGGTCSSCEEECCGGGCEEE
T ss_pred cCCcccCcccchHHHHHHHcCCEEEEEEEEecCCccCCCCCcccccCCCCCEEEEecccCCeecCCcCccccCCCCceEE
Confidence 23467999999999999999999999983 665 56999999999999999986543 246899
Q ss_pred EEEeecHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHhhCCceeeceeeHhHHHHHHHhCCCCc
Q 018224 160 SLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQF 239 (359)
Q Consensus 160 ~~~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~eypdI~~~~~~vD~~~~~Lv~~P~~f 239 (359)
++++|||+++|||+|+||+||++| |++||+|||+|||+ +++||+++|+||+++||||+++|++||+++||||++|++|
T Consensus 163 ~~~~~T~~~~eRiar~AFe~A~~r-rkkVt~v~KaNvlk-~~~lf~~~~~eva~eypdI~~~~~~vD~~~m~lv~~P~~F 240 (363)
T 1cnz_A 163 DTEVYHRFEIERIARIAFESARKR-RRKVTSIDKANVLQ-SSILWREIVNDVAKTYPDVELAHMYIDNATMQLIKDPSQF 240 (363)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHTT-TSEEEEEECTTTCH-HHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGC
T ss_pred EEEEEcHHHHHHHHHHHHHHHHhc-CCeEEEEECCcccc-cchhHHHHHHHHHHHCCCceEeeeeHHHHHHHHhhCcccc
Confidence 999999999999999999999998 78999999999999 8999999999999999999999999999999999999999
Q ss_pred cEEEeCCcchhhHHHhhhhhcCCCCccceeeeCCCc-ceEeccccCCCCCcccccccccCChhHHHHHHHHHHhh-cCCH
Q 018224 240 DVMVTPNLYGNLVSNTAAGIAGGTGVMPGGNVGADT-AVFEQGASAGNVGNEKVVEQKKANPVALLLSSAMMLRH-LQFP 317 (359)
Q Consensus 240 dViv~~NlfGDILSDlaa~l~GglGl~psanig~~~-a~FEp~~~~~HGsApdiaGk~~ANP~a~Ils~ammL~~-lg~~ 317 (359)
|||||+|||||||||++|+++||+||+||+|+|++. +||||+ |||||||||||+|||+|+|||++|||+| ||++
T Consensus 241 DVivt~NlfGDIlSD~aa~l~GslGl~pSanig~~~~a~fEpv----HGSAPdiAGk~iANP~A~IlS~ammL~~~lg~~ 316 (363)
T 1cnz_A 241 DVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGLYEPA----GGSAPDIAGKNIANPIAQILSLALLLRYSLDAN 316 (363)
T ss_dssp SEEEECHHHHHHHHHHHHHHHTCGGGCEEEEECTTSCEEEEES----SCCCGGGTTTTCSCCHHHHHHHHHHHHHHSSCH
T ss_pred eEEEECCcchHHHHHHHHHhcCCCcccccceeCCCCCeEEEcC----CCChhhhcCCCccCcHHHHHHHHHHHHHHCCCH
Confidence 999999999999999999999999999999999875 899999 9999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHHcCcccCCCC-CC-C-CcHHHHHHHHHHhc
Q 018224 318 SFADRLETAVKRVISEEKYRTKDL-GG-G-CTTQQIVDAVIANL 358 (359)
Q Consensus 318 ~~A~~i~~Av~~~l~~g~~~T~Dl-gg-~-~~T~e~~~av~~~l 358 (359)
++|++|++||.+++++| ++|+|| || + +||+||+|+|+++|
T Consensus 317 ~~A~~Ie~Av~~~l~~g-~~T~Dl~gG~~~~~T~e~~daV~~~l 359 (363)
T 1cnz_A 317 DAATAIEQAINRALEEG-VRTGDLARGAAAVSTDEMGDIIARYV 359 (363)
T ss_dssp HHHHHHHHHHHHHHHTT-CCCGGGTTTTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcC-CcCcccCCCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999 799999 78 6 89999999999987
No 14
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural genomics center for infectious ssgcid, glyoxylate bypass, manganese; 1.65A {Burkholderia pseudomallei} SCOP: c.77.1.1 PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4aj3_A* 4aja_A* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A ...
Probab=100.00 E-value=5.1e-111 Score=844.81 Aligned_cols=327 Identities=32% Similarity=0.515 Sum_probs=306.0
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHHHHHc-------CCCeeEEEEEecCc-c----c--CCcHHHHHHHHhcCceeecccc
Q 018224 28 SPRAVTLIPGDGIGPLVTNAVEQVMEAM-------HAPIYFEKYEVHGD-M----K--RVPQQVLDSIRKNKVCLKGGLK 93 (359)
Q Consensus 28 ~~~~I~vi~GDGIGpEV~~~a~~vl~~~-------~~~ie~~~~~~g~~-~----~--~lp~et~~~~~~~da~l~G~~~ 93 (359)
.+++|++|||||||||||+++++||+++ +++|+|+++++|++ + + ++|++|+++|+++|++||||++
T Consensus 35 ~~~~I~vipGDGIGpEV~~~a~~Vl~aa~~~~~~~~~~i~~~~~~~G~~a~~~~G~~~~lp~etl~~~k~~da~l~G~~~ 114 (427)
T 3dms_A 35 DQPIIPYIEGDGTGFDITPVMIKVVDAAVEKAYGGKKKIHWMEIYAGEKATKVYGPDVWLPEETLQVLKEYVVSIKGPLT 114 (427)
T ss_dssp SSBEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEECCTHHHHHHHCTTCSSCHHHHHHHHHTCEEEECCCC
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeCCHHHHHhcCCCCCCCHHHHHHHHhcCEEEECCCC
Confidence 3689999999999999999999999985 37999999999976 4 3 7999999999999999999999
Q ss_pred CCCCCCcccchHHHHhhcCcEEEEEEeecCCCCCCCc---ccccEEEEecCCcceEeccceee-----------------
Q 018224 94 TPVGGGVSSLNVQLRKELDLYAALVNCFNLPGLPTRH---QNVDIVVIRENTEGEYSGLEHEV----------------- 153 (359)
Q Consensus 94 ~p~~~~~~s~~~~LR~~ldlyanvRP~~~~pg~~~~~---~~iDivivREnteG~Y~g~~~~~----------------- 153 (359)
+|.+++++|+|+.||+.||||||+|||+++||+++|+ +++|||||||||||+|+|.|++.
T Consensus 115 tP~~~~~~s~~l~LRk~LdLyaNlRPv~~~pg~~splk~~~~vDivIvREnTeG~Y~G~e~~~~~~~~~~~~~~~~~~~g 194 (427)
T 3dms_A 115 TPVGGGIRSLNVALRQELDLYVCLRPIQYFKGVPSPVREPEKTNMVIFRENSEDIYAGIEWAAESEQAKKVIKFLQEEMG 194 (427)
T ss_dssp CCC----CCHHHHHHHHTTCCEEEEEECCCTTCCCSSSCGGGCCEEEEEECSSGGGGCCEECTTCHHHHHHHHHHHHTSC
T ss_pred CCCCcccCChhHHHHHHhCCeEEEEEeecCCCCCCCCCCCCCceEEEEEECCCCEecCcccccCCccccccccccccccc
Confidence 9987788999999999999999999999999999987 47999999999999999998653
Q ss_pred ------eCCEEEEEEeecHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHh-hCCc---------
Q 018224 154 ------VPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVAT-KYPS--------- 217 (359)
Q Consensus 154 ------~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~-eypd--------- 217 (359)
.+++++++++|||+++|||+|+||+||++|+|++||+|||+||||.|||||+++|+||++ +||+
T Consensus 195 ~~~~~~~~~~a~~~~~~Tr~~~eRIar~AFe~A~~r~rkkVT~V~KaNVlk~tdglfr~~~~eva~~eypdv~~~~~~~~ 274 (427)
T 3dms_A 195 VKKIRFPQTSGIGIKPVSKEGTERLVRKAIQYAIDNDRKSVTLVHKGNIMKFTEGAFRDAGYALAQKEFGAELIDGGPWM 274 (427)
T ss_dssp CCCCSCGGGCCEECCCCCHHHHHHHHHHHHHHHHHTTCSEEEEEECTTTSTTTHHHHHHHHHHHHHHHHCCEESTTSSCE
T ss_pred ccccccCCcceEEEEEecHHHHHHHHHHHHHHHHhcCCCeEEEEECCccchhhhHHHHHHHHHHHHHhCCcccccccccc
Confidence 135688999999999999999999999999889999999999999999999999999987 6985
Q ss_pred ----------eeeceeeHhHHHHHHHhCCCCccEEEeCCcchhhHHHhhhhhcCCCCccceeeeCCCcceEeccccCCCC
Q 018224 218 ----------IKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGGNVGADTAVFEQGASAGNV 287 (359)
Q Consensus 218 ----------I~~~~~~vD~~~~~Lv~~P~~fdViv~~NlfGDILSDlaa~l~GglGl~psanig~~~a~FEp~~~~~HG 287 (359)
|+++|++||++|||||++|++||||||+|||||||||++|+++||+||+||+|||++.+||||+ ||
T Consensus 275 ~~~~~~~~~~V~~~~~~VD~~amqlv~~P~~FDViVt~NlfGDILSD~aA~l~GslGl~pSanig~~~a~fEpv----HG 350 (427)
T 3dms_A 275 KFKNPKTGNEIVVKDSIADAFLQQILLRPAEYDVIATLNLNGDYISDALAAQVGGIGIAPGANLSDSVAMFEAT----HG 350 (427)
T ss_dssp EEECTTTCCEEEEEEEEHHHHHHHHHHCGGGCCEEEECHHHHHHHHHHHHHHTTCTTTCEEEEECSSCEEEEEC----SC
T ss_pred ccccccccCceEEEEeeHHHHHHHHhhCcccceEEEEcccccHHHHHHHHHhcCCccccceeeeCCCcceEEec----cC
Confidence 8899999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred CcccccccccCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHcCcccCCCCCC------CCcHHHHHHHHHHhcC
Q 018224 288 GNEKVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEEKYRTKDLGG------GCTTQQIVDAVIANLD 359 (359)
Q Consensus 288 sApdiaGk~~ANP~a~Ils~ammL~~lg~~~~A~~i~~Av~~~l~~g~~~T~Dlgg------~~~T~e~~~av~~~l~ 359 (359)
|||||||||+|||+|+|||++|||+|||+.++|++|++||.+++++| ++|+|||| .+||+||+++|+++|+
T Consensus 351 SAPdIAGk~iANP~A~IlS~amML~~lg~~~~A~~Ie~AV~~vl~~G-~~T~Dlgg~~~g~~~~~T~e~~daV~~~l~ 427 (427)
T 3dms_A 351 TAPKYAGKDYVNPGSEILSAEMMLRHLGWTEAADVIISAMEKSIKQK-RVTYDFARLMEGATQVSCSGFGQVLIENME 427 (427)
T ss_dssp CCGGGTTSSCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-EECHHHHTTSSSCEECCHHHHHHHHHHTTC
T ss_pred ChhhhcCCCcCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcC-CcchhhccccCCCCccCHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999 68999976 5899999999999885
No 15
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate and isopropylmalate dehydrogenases family, biosynthesis; 2.25A {Arabidopsis thaliana}
Probab=100.00 E-value=6.5e-111 Score=836.57 Aligned_cols=326 Identities=30% Similarity=0.495 Sum_probs=304.2
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHHHHHc----CCCeeEEEEEecCc-cc----CCcHHHHHHHHhcCceeeccccCCCC
Q 018224 27 GSPRAVTLIPGDGIGPLVTNAVEQVMEAM----HAPIYFEKYEVHGD-MK----RVPQQVLDSIRKNKVCLKGGLKTPVG 97 (359)
Q Consensus 27 ~~~~~I~vi~GDGIGpEV~~~a~~vl~~~----~~~ie~~~~~~g~~-~~----~lp~et~~~~~~~da~l~G~~~~p~~ 97 (359)
+.+++|++|||||||||||+++++||+++ +++++|+++++|++ ++ ++|++++++|+++|++||||+++|..
T Consensus 40 ~~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~k~~daiL~Gavg~P~~ 119 (405)
T 3r8w_A 40 KKRYTITLLPGDGIGPEVVSIAKNVLQQAGSLEGVEFNFREMPIGGAALDLVGVPLPEETISAAKESDAVLLGAIGGYKW 119 (405)
T ss_dssp -CEEEEEEEEESTTHHHHHHHHHHHHHHHHHHTTCEEEEEECCCHHHHHHHHSSSSCHHHHHHHHHSSEEEEEECCCGGG
T ss_pred CCCeEEEEECCCcccHHHHHHHHHHHHHHHHhcCCceEEEEEEcCHHHHHhhCCcCCHHHHHHHHHCCEEEEccccCCCc
Confidence 35699999999999999999999999997 79999999999987 43 89999999999999999999999842
Q ss_pred ---CCc---ccchHHHHhhcCcEEEEEEeecCCCC--CCCc-----ccccEEEEecCCcceEeccceeee-----CCEEE
Q 018224 98 ---GGV---SSLNVQLRKELDLYAALVNCFNLPGL--PTRH-----QNVDIVVIRENTEGEYSGLEHEVV-----PGVVE 159 (359)
Q Consensus 98 ---~~~---~s~~~~LR~~ldlyanvRP~~~~pg~--~~~~-----~~iDivivREnteG~Y~g~~~~~~-----~~va~ 159 (359)
+.. ++.|+.||++||||+|+|||+++||+ ++|+ +++|||||||||||+|+|.+++.. +++++
T Consensus 120 ~~~~~~~~p~~~ll~LRk~ldLyaNlRP~k~~~gl~~~splk~~~~~~vD~vIvREnTeG~Y~G~e~~~~~~~~~~~~a~ 199 (405)
T 3r8w_A 120 DNNEKHLRPEKGLLQIRAALKVFANLRPATVLPQLVDASTLKREVAEGVDLMVVRELTGGIYFGEPRGIKTNENGEEVGF 199 (405)
T ss_dssp TTSCGGGSHHHHHHHHHHHHTCCEEEEEEECCGGGGGGSSBCHHHHTTCEEEEEEECSCSTTTCSSCEEEECSSSCEEEE
T ss_pred cCCccccCcccchHHHHHHhCCeEEEEEeeccCCccccCccccccCCCceEEEEeeCCCCeecCCccccccCCCCceEEE
Confidence 112 35589999999999999999999998 4665 479999999999999999987642 35789
Q ss_pred EEEeecHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHhhCCceeeceeeHhHHHHHHHhCCCCc
Q 018224 160 SLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQF 239 (359)
Q Consensus 160 ~~~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~eypdI~~~~~~vD~~~~~Lv~~P~~f 239 (359)
++++|||+++|||+|+|||||++| +++||+|||+|||+.+ +||+++|+||+++||||+++|++||+++||||++|++|
T Consensus 200 ~~~~~Tr~~~eRIar~AFe~A~~r-rkkVT~v~KaNVlk~s-glf~~~~~eva~eYPdV~~~~~~VD~~amqLV~~P~~F 277 (405)
T 3r8w_A 200 NTEVYAAHEIDRIARVAFETARKR-RGKLCSVDKANVLEAS-ILWRKRVTALASEYPDVELSHMYVDNAAMQLVRDPKQF 277 (405)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHTT-TSEEEEEECTTTCHHH-HHHHHHHHHHGGGSTTSEEEEEEHHHHHHHHHHCGGGC
T ss_pred EEEEecHHHHHHHHHHHHHHHHHc-CCeEEEEECchhhccc-cHHHHHHHHHHhHCCCCeEEeeeHHHHHHHHHhChhhC
Confidence 999999999999999999999986 7899999999999965 99999999999999999999999999999999999999
Q ss_pred cEEEeCCcchhhHHHhhhhhcCCCCccceeeeCCC-cceEeccccCCCCCcccccccccCChhHHHHHHHHHHhh-cCCH
Q 018224 240 DVMVTPNLYGNLVSNTAAGIAGGTGVMPGGNVGAD-TAVFEQGASAGNVGNEKVVEQKKANPVALLLSSAMMLRH-LQFP 317 (359)
Q Consensus 240 dViv~~NlfGDILSDlaa~l~GglGl~psanig~~-~a~FEp~~~~~HGsApdiaGk~~ANP~a~Ils~ammL~~-lg~~ 317 (359)
|||||+|||||||||++|+++||+||+||+|+|++ ++||||+ |||||||||||+|||+|+|||++|||+| ||++
T Consensus 278 DViVt~NlfGDILSD~aA~l~GslGl~pSanig~~~~a~fEpv----HGSAPDIAGk~iANP~A~IlS~amML~~slg~~ 353 (405)
T 3r8w_A 278 DTIVTNNIFGDILSDEASMITGSIGMLPSASLSDSGPGLFEPI----HGSAPDIAGQDKANPLATILSAAMLLKYGLGEE 353 (405)
T ss_dssp SEEEECHHHHHHHHHHHHHHHSCGGGCEEEEECSSSCCEEEES----SCCCGGGTTTTCCCCHHHHHHHHHHHHHTTCCT
T ss_pred cEEeecchhhHHHHHHHHHhcCcccccceeeecCCCCeEEecC----CCChhhhCCCCCCCcHHHHHHHHHHHHhhCccH
Confidence 99999999999999999999999999999999976 6999999 9999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHHcCcccCCCC--CCC--CcHHHHHHHHHHhcC
Q 018224 318 SFADRLETAVKRVISEEKYRTKDL--GGG--CTTQQIVDAVIANLD 359 (359)
Q Consensus 318 ~~A~~i~~Av~~~l~~g~~~T~Dl--gg~--~~T~e~~~av~~~l~ 359 (359)
++|++|++||.+++++| ++|+|| ||+ ++|+||+++|+++|+
T Consensus 354 ~~A~~Ie~AV~~~l~~G-~~T~Dl~~gG~~~~~T~e~~~aV~~~l~ 398 (405)
T 3r8w_A 354 KAAKRIEDAVLVALNNG-FRTGDIYSAGTKLVGCKEMGEEVLKSVD 398 (405)
T ss_dssp THHHHHHHHHHHHHHTT-EECGGGCCTTSEECCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcC-CcCccccCCCCcccCHHHHHHHHHHHHH
Confidence 99999999999999999 799999 999 999999999999873
No 16
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A*
Probab=100.00 E-value=1.2e-110 Score=838.78 Aligned_cols=327 Identities=33% Similarity=0.551 Sum_probs=304.6
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHHHHHc-------CCCeeEEEEEecCc-cc----CCcHHHHHHHHhcCceeeccccCC
Q 018224 28 SPRAVTLIPGDGIGPLVTNAVEQVMEAM-------HAPIYFEKYEVHGD-MK----RVPQQVLDSIRKNKVCLKGGLKTP 95 (359)
Q Consensus 28 ~~~~I~vi~GDGIGpEV~~~a~~vl~~~-------~~~ie~~~~~~g~~-~~----~lp~et~~~~~~~da~l~G~~~~p 95 (359)
.+++|++|||||||||||+++++||+++ +++|+|+++++|.+ ++ ++|++|+++|+++|++||||+++|
T Consensus 23 ~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkGav~tP 102 (409)
T 2e0c_A 23 NKPVILYIEGDGIGPEITNAAIKVINKAVERAYGSSREIKWLEVYAGEKAEKLVNDRFPKETQEMLLKYRVVLKGPLETP 102 (409)
T ss_dssp SSBEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEECCCTHHHHHHHSCSSCHHHHHHHHHHCEEEECCCC--
T ss_pred CCceEeeCCCCCcCHHHHHHHHHHHHHHHHhhcCCCCceEEEEEechHHHHHhhCCcCCHHHHHHHHHCCEEEECCccCC
Confidence 4589999999999999999999999997 38999999999987 43 899999999999999999999999
Q ss_pred CCCCcccchHHHHhhcCcEEEEEEeecCCCCCCCcc---cccEEEEecCCcceEeccceee-------------------
Q 018224 96 VGGGVSSLNVQLRKELDLYAALVNCFNLPGLPTRHQ---NVDIVVIRENTEGEYSGLEHEV------------------- 153 (359)
Q Consensus 96 ~~~~~~s~~~~LR~~ldlyanvRP~~~~pg~~~~~~---~iDivivREnteG~Y~g~~~~~------------------- 153 (359)
.+++++|+|++||+.||||+|+|||+++||+++|++ ++|||||||||||+|+|.+++.
T Consensus 103 ~~~~~~s~~l~LR~~LdlyanvRPv~~~~g~~splk~~~~vDivIvREnteg~Y~g~e~~~~~~~~~~v~~f~~~~~~~~ 182 (409)
T 2e0c_A 103 IGKGWKSVNVAIRLMLDLYANIRPVKYIEGLESPLKHPEKVDMIIFRENTDDLYRGIEYPFNSEEAKKIRDFLRKELKVE 182 (409)
T ss_dssp ------CHHHHHHHHTTCCEEEEEEECCTTCCCSBSCCTTCEEEEEEECSSGGGGCCEECTTSHHHHHHHHHHHHHSCCC
T ss_pred CcccccChhHHHHHHcCCEEEEEEEeccCCCCCCCCCccCCcEEEEEcCCCCEeCCcccccCCCcccchhhccchhcccc
Confidence 777788999999999999999999999999999885 6999999999999999998753
Q ss_pred -eCCEEEEEEeecHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHh-hCCc--------------
Q 018224 154 -VPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVAT-KYPS-------------- 217 (359)
Q Consensus 154 -~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~-eypd-------------- 217 (359)
.+++++++++||+++++||+|+||+||++|++++||+|||+|||+.|||+|+++|+||++ +|||
T Consensus 183 ~~~~~a~~~~~~t~~~~eRiar~AFe~A~~r~rkkVt~v~KaNVlk~sdglf~~~~~eva~~eypd~~~~~~~~~~~~~~ 262 (409)
T 2e0c_A 183 IEDDTGIGIKVMSKYKTQRITRLAIQYAIEHKRKKVTIMHKGNVMKYTEGAFREWAYEVALKEYRDFIVTEEEINQGKPD 262 (409)
T ss_dssp CCSSEEEEEEEEEHHHHHHHHHHHHHHHHHTTCCEEEEEECTTTSTTTHHHHHHHHHHHHHHHSTTTEEEHHHHTTTCCC
T ss_pred CCCceEEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECccchhhhhhHHHHHHHHHHHHhCCCcccccccccccccc
Confidence 247899999999999999999999999999888999999999999999999999999997 9999
Q ss_pred ---eeeceeeHhHHHHHHHhCCCCccEEEeCCcchhhHHHhhhhhcCCCCccceeeeCCCcceEeccccCCCCCcccccc
Q 018224 218 ---IKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGGNVGADTAVFEQGASAGNVGNEKVVE 294 (359)
Q Consensus 218 ---I~~~~~~vD~~~~~Lv~~P~~fdViv~~NlfGDILSDlaa~l~GglGl~psanig~~~a~FEp~~~~~HGsApdiaG 294 (359)
|+++|++||+++||||++|++||||||+|||||||||++|+++||+||+||+|+|++++||||+ |||||||||
T Consensus 263 ~~~I~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDILSD~aa~l~GslGl~pSanig~~~a~fEp~----HGSAPdiAG 338 (409)
T 2e0c_A 263 QGKIILNDRIADNMFQQIIIRPEEYDIILAPNVNGDYISDAAGALIGNIGMLGGANIGDEGGMFEAI----HGTAPKYAG 338 (409)
T ss_dssp TTSEEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHTTSCGGGCEEEEEETTEEEEEES----SCCCGGGTT
T ss_pred CCeEEEEEEEHHHHHHHHhhCcccccEEEECCcchHHHHHHHHHhcCCcccCceEEECCCceEEecC----CCChhhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred cccCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHcCcccCCCCCC-----CCcHHHHHHHHHHhcC
Q 018224 295 QKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEEKYRTKDLGG-----GCTTQQIVDAVIANLD 359 (359)
Q Consensus 295 k~~ANP~a~Ils~ammL~~lg~~~~A~~i~~Av~~~l~~g~~~T~Dlgg-----~~~T~e~~~av~~~l~ 359 (359)
||+|||+|+|||++|||+|||++++|++|++||.+++++| ++|+|||| .+||+||+++|+++|+
T Consensus 339 k~iANP~A~IlS~ammL~~lg~~~~A~~Ie~Av~~~l~~g-~~T~Dl~g~~g~~~~~T~e~~daV~~~l~ 407 (409)
T 2e0c_A 339 KNVANPTGIIKAGELMLRWMGWNEAADLIEKAINMAIRDK-KVTQDIARFMGVKALGTKEYADELIKIMD 407 (409)
T ss_dssp TTCSCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTT-CCCHHHHHHHTSCCCCHHHHHHHHHHHHT
T ss_pred CcccCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcC-CccccccccCCCCCcCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999 68999964 6899999999999874
No 17
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus}
Probab=100.00 E-value=1.2e-110 Score=838.73 Aligned_cols=325 Identities=36% Similarity=0.576 Sum_probs=311.2
Q ss_pred cceEEEEcCCCCcHHHHHHHHHHHHHc----CCCeeEEEEEecCc-cc----CCcHHHHHHHHhcCceeeccccCCCCCC
Q 018224 29 PRAVTLIPGDGIGPLVTNAVEQVMEAM----HAPIYFEKYEVHGD-MK----RVPQQVLDSIRKNKVCLKGGLKTPVGGG 99 (359)
Q Consensus 29 ~~~I~vi~GDGIGpEV~~~a~~vl~~~----~~~ie~~~~~~g~~-~~----~lp~et~~~~~~~da~l~G~~~~p~~~~ 99 (359)
+++|++|||||||||||+++++||+++ +++++|+++++|.+ ++ ++|++|+++|+++|++||||+++|.+++
T Consensus 27 ~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~etl~~~k~~da~LkGav~tP~~~~ 106 (412)
T 2iv0_A 27 NPIIPYFEGDGIGKDVVPAAIRVLDAAADKIGKEVVWFQVYAGEDAYKLYGNYLPDDTLNAIKEFRVALKGPLTTPVGGG 106 (412)
T ss_dssp SBEEEEECCSTTHHHHHHHHHHHHHHHHHHHTCCCEEEECCCSHHHHHHHSCSSCHHHHHHHHHHCEEEECCCCCCSSSS
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHhhCCcCCHHHHHHHHHCCEEEECCccCCCCcc
Confidence 588999999999999999999999998 89999999999986 43 8999999999999999999999997778
Q ss_pred cccchHHHHhhcCcEEEEEEeecCCCCCCCcc---cccEEEEecCCcceEeccceee--------------------eCC
Q 018224 100 VSSLNVQLRKELDLYAALVNCFNLPGLPTRHQ---NVDIVVIRENTEGEYSGLEHEV--------------------VPG 156 (359)
Q Consensus 100 ~~s~~~~LR~~ldlyanvRP~~~~pg~~~~~~---~iDivivREnteG~Y~g~~~~~--------------------~~~ 156 (359)
++|+|++||+.||||+|+|||+++||+++|++ ++|||||||||||+|+|.+++. .++
T Consensus 107 ~~s~~l~LR~~Ldlyan~RPv~~~~g~~splk~~~~vDivIvREnTeg~Y~G~e~~~~~~~~~~v~~~~~~~~~~~~~~~ 186 (412)
T 2iv0_A 107 YRSLNVTIRQVLDLYANVRPVYYLKGVPSPIKHPEKVNFVIFRENTEDVYAGIEWPRGSEEALKLIRFLKNEFGVTIRED 186 (412)
T ss_dssp SSHHHHHHHHHTTCCEEEEEEECCTTSCCSBSCGGGCEEEEEEECSSSGGGCCEECTTCHHHHHHHHHHHHHHCCCCCTT
T ss_pred ccChhHHHHHHcCCeEEEEEEEecCCCCCCCCCcCCCCEEEEecCCCCEeCCcccccCCccccchhhcccccccccCCCc
Confidence 89999999999999999999999999999885 6999999999999999998753 246
Q ss_pred EEEEEEeecHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHh-hCCc------------------
Q 018224 157 VVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVAT-KYPS------------------ 217 (359)
Q Consensus 157 va~~~~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~-eypd------------------ 217 (359)
+++++++||+++++||+|+||+||++|++++||+|||+|||+.|+|+|+++|+||++ +||+
T Consensus 187 ~a~~~~~~t~~~~eRiar~AFe~A~~r~rkkVt~v~KaNVlk~t~Glf~~~~~eva~~eypd~~~~~~~~~~~~~~~~~~ 266 (412)
T 2iv0_A 187 SGIGIKPISEFATKRLVRMAIRYAIENNRKSVTLVHKGNIMKYTEGAFRDWGYEVAKQEFGEYCITEDELWDKYGGKQPE 266 (412)
T ss_dssp EEEEEEEEEHHHHHHHHHHHHHHHHHTTCSEEEEEECTTTCTTTHHHHHHHHHHHHHHHSTTTEECHHHHHHHHTTCCCT
T ss_pred eEEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECccchhhhhHHHHHHHHHHHHHhCCCccccccchhhhccccccC
Confidence 899999999999999999999999999888999999999999999999999999997 9999
Q ss_pred --eeeceeeHhHHHHHHHhCCCCccEEEeCCcchhhHHHhhhhhcCCCCccceeeeCCCcceEeccccCCCCCccccccc
Q 018224 218 --IKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGGNVGADTAVFEQGASAGNVGNEKVVEQ 295 (359)
Q Consensus 218 --I~~~~~~vD~~~~~Lv~~P~~fdViv~~NlfGDILSDlaa~l~GglGl~psanig~~~a~FEp~~~~~HGsApdiaGk 295 (359)
|+++|++||+++||||++|++||||||+|||||||||++|+++||+||+||+|+|+.++||||+ ||||||||||
T Consensus 267 ~~I~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDILSD~aA~l~GslGlapsanig~~~a~fEp~----HGSAPdiAGk 342 (412)
T 2iv0_A 267 GKIVVKDRIADNMFQQILTRTDEYDVIALPNLNGDYLSDAAAALIGGLGIAPGSNIGDGIGVFEPV----HGSAPKYAGQ 342 (412)
T ss_dssp TCEEEEEEEGGGHHHHHHHSGGGCCEEEECHHHHHHHHHHHHHHTTCGGGCEEEEEETTEEEEEES----SCCCSTTTTS
T ss_pred CeEEEEEEEHHHHHHHHhhCcccccEEEECCcchHHHHHHHHHhcCCccccceEEECCCceEEeCC----CCChhhcCCC
Confidence 9999999999999999999999999999999999999999999999999999999989999999 9999999999
Q ss_pred ccCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHcCcccCCCCC---C--CCcHHHHHHHHHHhc
Q 018224 296 KKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEEKYRTKDLG---G--GCTTQQIVDAVIANL 358 (359)
Q Consensus 296 ~~ANP~a~Ils~ammL~~lg~~~~A~~i~~Av~~~l~~g~~~T~Dlg---g--~~~T~e~~~av~~~l 358 (359)
|+|||+|+|||++|||+|||++++|++|++||.+++++| ++|+||| | .+||+||+|+|+++|
T Consensus 343 ~iANP~A~IlS~amML~~lg~~~~A~~Ie~Av~~~l~~g-~~T~Dl~~~~G~~~~~T~e~~daV~~~l 409 (412)
T 2iv0_A 343 NKVNPTAEILTGALMFEYIGWKDASEMIKKAVEMTISSG-IVTYDIHRHMGGTKVGTREFAEAVVENL 409 (412)
T ss_dssp SCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-EECHHHHHHHCSEECCHHHHHHHHHHHH
T ss_pred cccCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcC-CcccccccccCCCCcCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 6899996 5 689999999999987
No 18
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A
Probab=100.00 E-value=3.5e-110 Score=817.21 Aligned_cols=317 Identities=32% Similarity=0.530 Sum_probs=301.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEecCc-cc----CCcHHHHHHHHhcCceeeccccCCC-CCC--cc
Q 018224 30 RAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGD-MK----RVPQQVLDSIRKNKVCLKGGLKTPV-GGG--VS 101 (359)
Q Consensus 30 ~~I~vi~GDGIGpEV~~~a~~vl~~~~~~ie~~~~~~g~~-~~----~lp~et~~~~~~~da~l~G~~~~p~-~~~--~~ 101 (359)
++|++|||||||||||+++++||++++.+++|+++++|++ ++ ++|++++++|+++|++||||+++|. +.+ ++
T Consensus 2 ~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~G~~~~~~~g~~lp~~t~~~~~~~da~l~Gav~~P~~~~~~~~~ 81 (337)
T 1w0d_A 2 SKLAIIAGDGIGPEVTAEAVKVLDAVVPGVQKTSYDLGARRFHATGEVLPDSVVAELRNHDAILLGAIGDPSVPSGVLER 81 (337)
T ss_dssp CEEEEEEESTTHHHHHHHHHHHHHHHSTTCEEEECCCSHHHHHHHSCSSCHHHHHHHTTSSEEEEEECCCTTSCTTHHHH
T ss_pred cEEEEeCCCCcCHHHHHHHHHHHHHhcCCcEEEEEecchHHHhhhCCcCCHHHHHHHHHCCEEEECCccCCCCCCccccc
Confidence 6899999999999999999999999977899999999986 43 8999999999999999999999993 322 36
Q ss_pred cchHHHHhhcCcEEEEEEeecCCCCCCCccc---ccEEEEecCCcceEeccceeee----CCEEEEEEeecHHHHHHHHH
Q 018224 102 SLNVQLRKELDLYAALVNCFNLPGLPTRHQN---VDIVVIRENTEGEYSGLEHEVV----PGVVESLKVITKFCSERIAK 174 (359)
Q Consensus 102 s~~~~LR~~ldlyanvRP~~~~pg~~~~~~~---iDivivREnteG~Y~g~~~~~~----~~va~~~~~~Tr~~~eRiar 174 (359)
|+|++||+.||||+|+|||+++||+++|+++ +|||||||||||+|+|.+++.. +++++++++|||+++|||+|
T Consensus 82 s~~l~lR~~ldlyan~RP~~~~pg~~s~l~~~~~~DivivREnteg~Y~g~e~~~~~g~~~~~a~~~~~~T~~~~eRiar 161 (337)
T 1w0d_A 82 GLLLRLRFELDHHINLRPARLYPGVASPLSGNPGIDFVVVREGTEGPYTGNGGAIRVGTPNEVATEVSVNTAFGVRRVVA 161 (337)
T ss_dssp HTHHHHHHHTTCCEEEEEEECCTTCCCSBTTCCCCEEEEEEECSCSGGGCCEEEESTTSTTCEEEEEEEEEHHHHHHHHH
T ss_pred chHHHHHHHcCCEEEEEEeecCCCCCCcccCCCCCcEEEEecCCCCeecCCcceecCCCCCCeEEEEEEEcHHHHHHHHH
Confidence 8899999999999999999999999999876 9999999999999999998752 45899999999999999999
Q ss_pred HHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHhhCCceeeceeeHhHHHHHHHhCCCCccEEEeCCcchhhHHH
Q 018224 175 YAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSN 254 (359)
Q Consensus 175 ~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~eypdI~~~~~~vD~~~~~Lv~~P~~fdViv~~NlfGDILSD 254 (359)
+||+||++| |+|||+|||+||||+|||||+++|+||+++||||+++|++||+++||||++|++||||||+|||||||||
T Consensus 162 ~AFe~A~~r-rkkVt~v~KaNvlk~s~glf~~~~~eva~eyp~i~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDIlSD 240 (337)
T 1w0d_A 162 DAFERARRR-RKHLTLVHKTNVLTFAGGLWLRTVDEVGECYPDVEVAYQHVDAATIHMITDPGRFDVIVTDNLFGDIITD 240 (337)
T ss_dssp HHHHHHHHT-TSEEEEEECTTTSHHHHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHH
T ss_pred HHHHHHHHc-CCeEEEEECCccchhhhHHHHHHHHHHHHHCCceEEEEEEHHHHHHHHhhCcccccEEEECcchhHHHHH
Confidence 999999998 8899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCccceeeeCC---CcceEeccccCCCCCcccccccccCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 018224 255 TAAGIAGGTGVMPGGNVGA---DTAVFEQGASAGNVGNEKVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVI 331 (359)
Q Consensus 255 laa~l~GglGl~psanig~---~~a~FEp~~~~~HGsApdiaGk~~ANP~a~Ils~ammL~~lg~~~~A~~i~~Av~~~l 331 (359)
++|+++||+||+||+|+|+ .++||||+ |||||||||||+|||+|+|||++|||+|||++++|++|++||.+++
T Consensus 241 ~aa~l~GslGl~psanig~~~~~~a~fEp~----HGSAPdiAGk~iANP~A~IlS~ammL~~lg~~~~A~~Ie~Av~~~l 316 (337)
T 1w0d_A 241 LAAAVCGGIGLAASGNIDATRANPSMFEPV----HGSAPDIAGQGIADPTAAIMSVALLLSHLGEHDAAARVDRAVEAHL 316 (337)
T ss_dssp HHHHHTTCGGGCEEEEECTTCSSCEEEEES----SCCCGGGTTSSCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHhhhcCCcccCceeEeCCCCCCceEEecC----CCChhhhCCCCCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999998 46899999 9999999999999999999999999999999999999999999999
Q ss_pred HcCcccCCCCCC-CCcHHHHHHHHHHhc
Q 018224 332 SEEKYRTKDLGG-GCTTQQIVDAVIANL 358 (359)
Q Consensus 332 ~~g~~~T~Dlgg-~~~T~e~~~av~~~l 358 (359)
++| || ++||+||+|+|+++|
T Consensus 317 ~~g-------gg~~~~T~e~~~av~~~l 337 (337)
T 1w0d_A 317 ATR-------GSERLATSDVGERIAAAL 337 (337)
T ss_dssp HHC-------TTCCCCHHHHHHHHHHTC
T ss_pred HcC-------CCCCcCHHHHHHHHHhhC
Confidence 998 77 899999999999976
No 19
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1
Probab=100.00 E-value=9.6e-110 Score=834.70 Aligned_cols=327 Identities=34% Similarity=0.542 Sum_probs=311.5
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHHHHHc-------CCCeeEEEEEecCc-cc----CCcHHHHHHHHhcCceeeccccCC
Q 018224 28 SPRAVTLIPGDGIGPLVTNAVEQVMEAM-------HAPIYFEKYEVHGD-MK----RVPQQVLDSIRKNKVCLKGGLKTP 95 (359)
Q Consensus 28 ~~~~I~vi~GDGIGpEV~~~a~~vl~~~-------~~~ie~~~~~~g~~-~~----~lp~et~~~~~~~da~l~G~~~~p 95 (359)
.+++|++|||||||||||+++++||+++ +++++|+++++|.+ ++ ++|++++++|+++|++||||+++|
T Consensus 18 ~~~~I~vipGDGIGpEI~~~a~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~lkGav~tP 97 (423)
T 1hqs_A 18 NNPIIPFIEGDGTGPDIWNAASKVLEAAVEKAYKGEKKITWKEVYAGEKAYNKTGEWLPAETLDVIREYFIAIKGPLTTP 97 (423)
T ss_dssp SSBEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEECCCTHHHHHHHSCSSCHHHHHHHHHHCEEEECCCCCC
T ss_pred CCCEEEEECCCCcCHHHHHHHHHHHHHHHhhhcCCCCceEEEEEecCHHHHHhhCCcCcHHHHHHHHHCCEEEECCccCC
Confidence 4689999999999999999999999997 38999999999976 43 899999999999999999999999
Q ss_pred CCCCcccchHHHHhhcCcEEEEEEeecCCCCCCCcc---cccEEEEecCCcceEeccceee-------------------
Q 018224 96 VGGGVSSLNVQLRKELDLYAALVNCFNLPGLPTRHQ---NVDIVVIRENTEGEYSGLEHEV------------------- 153 (359)
Q Consensus 96 ~~~~~~s~~~~LR~~ldlyanvRP~~~~pg~~~~~~---~iDivivREnteG~Y~g~~~~~------------------- 153 (359)
.+++++|+|++||+.||||+|+|||+++||+++|++ ++|||||||||||+|+|.+++.
T Consensus 98 ~~~~~~s~nl~LRk~LdlyanvRPv~~~pg~~splk~~~~vDivIvREnteg~Y~G~e~~~g~~~~~~v~~~~~~~~~~~ 177 (423)
T 1hqs_A 98 VGGGIRSLNVALRQELDLFVCLRPVRYFTGVPSPVKRPEDTDMVIFRENTEDIYAGIEYAKGSEEVQKLISFLQNELNVN 177 (423)
T ss_dssp SSSSSCCHHHHHHHHTTCCEEEEEEECCTTCCCSBSCGGGCEEEEEEECSCGGGGCCEECTTCHHHHHHHHHHHHHSCCC
T ss_pred CCcCcCChhHHHHHHcCCEEEEEEEeccCCCCCCCCCCCCCcEEEEecCCCCeecccccccCCccccceecccccccccc
Confidence 877889999999999999999999999999999885 6999999999999999998752
Q ss_pred ----eCCEEEEEEeecHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHh-hCCc-----------
Q 018224 154 ----VPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVAT-KYPS----------- 217 (359)
Q Consensus 154 ----~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~-eypd----------- 217 (359)
.+++++++++|||+++|||+|+||+||++|+|++||+|||+||||.|+|+|+++|+||++ +||+
T Consensus 178 ~~~~~~~~a~~~~~~T~~~~eRiar~AFe~A~~r~rkkVt~v~KaNVlk~t~Glf~~~~~eva~~eypd~~~~~~~~~~~ 257 (423)
T 1hqs_A 178 KIRFPETSGIGIKPVSEEGTSRLVRAAIDYAIEHGRKSVTLVHKGNIMKFTEGAFKNWGYELAEKEYGDKVFTWAQYDRI 257 (423)
T ss_dssp CCSCGGGEEEEEEEEEHHHHHHHHHHHHHHHHHHTCSEEEEEECTTTSTTTHHHHHHHHHHHHHHHHGGGEEEHHHHHHH
T ss_pred ccccCCceEEEEEEEcHHHHHHHHHHHHHHHHHcCCCcEEEEECCccchhhhHHHHHHHHHHHHHhCCCcccchhhhccc
Confidence 246899999999999999999999999999889999999999999999999999999997 9999
Q ss_pred ---------------------eeeceeeHhHHHHHHHhCCCCccEEEeCCcchhhHHHhhhhhcCCCCccceeeeC--CC
Q 018224 218 ---------------------IKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGGNVG--AD 274 (359)
Q Consensus 218 ---------------------I~~~~~~vD~~~~~Lv~~P~~fdViv~~NlfGDILSDlaa~l~GglGl~psanig--~~ 274 (359)
|+++|++||+|+||||++|++||||||+|||||||||++|+++||+||+||+||| ++
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~I~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDILSD~aA~l~GslGl~pSanigp~~~ 337 (423)
T 1hqs_A 258 AEEQGKDAANKAQSEAEAAGKIIIKDSIADIFLQQILTRPNEFDVVATMNLNGDYISDALAAQVGGIGIAPGANINYETG 337 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCTTTCEEEEECTTTC
T ss_pred cccccccccccccccccccCeEEEEEeeHHHHHHHHhhCCCCccEEEECCcchHHHHHHHHhhcCCcccCccceecCCCC
Confidence 8999999999999999999999999999999999999999999999999999999 77
Q ss_pred cceEeccccCCCCCcccccccccCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHcCcccCCCCCC------CCcHH
Q 018224 275 TAVFEQGASAGNVGNEKVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEEKYRTKDLGG------GCTTQ 348 (359)
Q Consensus 275 ~a~FEp~~~~~HGsApdiaGk~~ANP~a~Ils~ammL~~lg~~~~A~~i~~Av~~~l~~g~~~T~Dlgg------~~~T~ 348 (359)
++||||+ |||||||||||+|||+|+|||++|||+|||+.++|++|++||.+++++| ++|+|||| .++|+
T Consensus 338 ~alfEp~----HGSAPdiAGk~iANP~A~IlS~amML~hlg~~~~A~~Ie~Av~~~l~~g-~~T~Dl~g~~~g~~~~~T~ 412 (423)
T 1hqs_A 338 HAIFEAT----HGTAPKYAGLDKVNPSSVILSGVLLLEHLGWNEAADLVIKSMEKTIASK-VVTYDFARLMDGATEVKCS 412 (423)
T ss_dssp CEEEEES----CCCCGGGTTTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTT-EECHHHHTTSSSCEECCHH
T ss_pred ceEEecC----CCChhhhCCCCCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcC-CcccccccccCCCCCcCHH
Confidence 8999999 9999999999999999999999999999999999999999999999999 68999976 68999
Q ss_pred HHHHHHHHhcC
Q 018224 349 QIVDAVIANLD 359 (359)
Q Consensus 349 e~~~av~~~l~ 359 (359)
||+++|+++|+
T Consensus 413 e~~daV~~~l~ 423 (423)
T 1hqs_A 413 EFGEELIKNMD 423 (423)
T ss_dssp HHHHHHHHTCC
T ss_pred HHHHHHHHhhC
Confidence 99999999985
No 20
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1
Probab=100.00 E-value=1.6e-109 Score=818.81 Aligned_cols=322 Identities=34% Similarity=0.522 Sum_probs=300.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHHc----CCCeeEEEEEecCc-cc----CCcHHHHHHHHhcCceeeccccCCCCCC-
Q 018224 30 RAVTLIPGDGIGPLVTNAVEQVMEAM----HAPIYFEKYEVHGD-MK----RVPQQVLDSIRKNKVCLKGGLKTPVGGG- 99 (359)
Q Consensus 30 ~~I~vi~GDGIGpEV~~~a~~vl~~~----~~~ie~~~~~~g~~-~~----~lp~et~~~~~~~da~l~G~~~~p~~~~- 99 (359)
++|+||||||||||||+++++||+++ +++++|+++++|++ ++ ++|++++++|+++|++||||+++|...+
T Consensus 2 ~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~l~Gavg~p~~~~~ 81 (358)
T 1a05_A 2 KKIAIFAGDGIGPEIVAAARQVLDAVDQAAHLGLRCTEGLVGGAALDASDDPLPAASLQLAMAADAVILGAVGGPRWDAY 81 (358)
T ss_dssp CEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCCCEEEECCCHHHHHHHHSSSSCHHHHHHHHHCSEEEEEECCCGGGTTS
T ss_pred cEEEEECCCCcCHHHHHHHHHHHHHHHHhcCCceEEEEEeCCcHHHHhhCCcCCHHHHHHHHHCCEEEECCccCCCcccC
Confidence 79999999999999999999999998 79999999999987 43 8999999999999999999999984211
Q ss_pred ------cccchHHHHhhcCcEEEEEEeecCCCCC--CCc-----ccccEEEEecCCcceEeccceee--e--CCEEEEEE
Q 018224 100 ------VSSLNVQLRKELDLYAALVNCFNLPGLP--TRH-----QNVDIVVIRENTEGEYSGLEHEV--V--PGVVESLK 162 (359)
Q Consensus 100 ------~~s~~~~LR~~ldlyanvRP~~~~pg~~--~~~-----~~iDivivREnteG~Y~g~~~~~--~--~~va~~~~ 162 (359)
+++ +++||+.||||+|+|||+++||+. +|+ +++|||||||||||+|+|.++.. . ++++++++
T Consensus 82 ~~~~~~e~~-ll~lRk~ldlyanvRP~~~~pgl~~~splk~~~~~~vDivIvREnteg~Y~g~~~~~~~~~~~~~a~~~~ 160 (358)
T 1a05_A 82 PPAKRPEQG-LLRLRKGLDLYANLRPAQIFPQLLDASPLRPELVRDVDILVVRELTGDIYFGQPRGLEVIDGKRRGFNTM 160 (358)
T ss_dssp CGGGSHHHH-HHHHHHHHTCCEEEEEEECCTTSGGGCSBCHHHHTTCEEEEEEECSSSTTTCSSCEEEEETTEEEEEEEE
T ss_pred Cccccchhh-HHHHHHHcCCEEEEEEEEecCCccCCCCCccccCCCceEEEEEecCCCcccCCcCccccCCCCceEEEEE
Confidence 123 899999999999999999999983 675 46999999999999999986432 1 35788999
Q ss_pred eecHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHhhCCceeeceeeHhHHHHHHHhCCCCccEE
Q 018224 163 VITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVM 242 (359)
Q Consensus 163 ~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~eypdI~~~~~~vD~~~~~Lv~~P~~fdVi 242 (359)
+|||+++|||+|+||+||++| |++||+|||+|||+ +++||+++|+||+++||+|+++|++||+|+||||++|++||||
T Consensus 161 ~~T~~~~eRiar~AFe~A~~r-rkkVt~v~KaNvlk-~~~lf~~~~~eva~eypdI~~~~~~vD~~~mqlv~~P~~FDVi 238 (358)
T 1a05_A 161 VYDEDEIRRIAHVAFRAAQGR-RKQLCSVDKANVLE-TTRLWREVVTEVARDYPDVRLSHMYVDNAAMQLIRAPAQFDVL 238 (358)
T ss_dssp EEEHHHHHHHHHHHHHHHHTT-TSEEEEEECTTTCH-HHHHHHHHHHHHGGGCTTSEEEEEEHHHHHHHHHHCGGGCSEE
T ss_pred EEcHHHHHHHHHHHHHHHHhc-CCeEEEEECCcccc-cchhHHHHHHHHHHHCCCceEEeeeHHHHHHHHHhCCCcccEE
Confidence 999999999999999999998 78999999999999 8999999999999999999999999999999999999999999
Q ss_pred EeCCcchhhHHHhhhhhcCCCCccceeeeCCCcceEeccccCCCCCcccccccccCChhHHHHHHHHHHhh-cCCHHHHH
Q 018224 243 VTPNLYGNLVSNTAAGIAGGTGVMPGGNVGADTAVFEQGASAGNVGNEKVVEQKKANPVALLLSSAMMLRH-LQFPSFAD 321 (359)
Q Consensus 243 v~~NlfGDILSDlaa~l~GglGl~psanig~~~a~FEp~~~~~HGsApdiaGk~~ANP~a~Ils~ammL~~-lg~~~~A~ 321 (359)
||+|||||||||++|+++||+||+||+|+|+..+||||+ |||||||||||+|||+|+|||++|||+| ||++++|+
T Consensus 239 vt~NlfGDIlSD~aa~l~GslGl~pSanig~~~~~fEpv----HGSAPdiAGk~iANP~A~IlS~ammL~~~lg~~~~A~ 314 (358)
T 1a05_A 239 LTGNMFGDILSDEASQLTGSIGMLPSASLGEGRAMYEPI----HGSAPDIAGQDKANPLATILSVAMMLRHSLNAEPWAQ 314 (358)
T ss_dssp EECHHHHHHHHHHHHHTTSCGGGCEEEEECSSCEEEEES----SCCCGGGTTTTCSCCHHHHHHHHHHHHHTSSCHHHHH
T ss_pred EecCcccHhHHHHHHhhcCCccccceeeeCCCceeeecC----CCChhHhcCCCccCcHHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999999999999999999778999999 9999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHcCcccCCCCCC---C-CcHHHHHHHHHHhcC
Q 018224 322 RLETAVKRVISEEKYRTKDLGG---G-CTTQQIVDAVIANLD 359 (359)
Q Consensus 322 ~i~~Av~~~l~~g~~~T~Dlgg---~-~~T~e~~~av~~~l~ 359 (359)
+|++||.+++++| ++|+||+| + +||+||+++|+++|+
T Consensus 315 ~Ie~Av~~~l~~g-~~T~Dl~g~g~~~~~T~e~~daV~~~l~ 355 (358)
T 1a05_A 315 RVEAAVQRVLDQG-LRTADIAAPGTPVIGTKAMGAAVVNALN 355 (358)
T ss_dssp HHHHHHHHHHHTT-CCCGGGCCTTSCCCCHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHcC-CcCcccccCCCCCcCHHHHHHHHHHHhh
Confidence 9999999999999 79999943 6 899999999999884
No 21
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans}
Probab=100.00 E-value=1.5e-109 Score=833.88 Aligned_cols=326 Identities=34% Similarity=0.541 Sum_probs=310.0
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHHHHHc-------CCCeeEEEEEecCc-c----c--CCcHHHHHHHHhcCceeecccc
Q 018224 28 SPRAVTLIPGDGIGPLVTNAVEQVMEAM-------HAPIYFEKYEVHGD-M----K--RVPQQVLDSIRKNKVCLKGGLK 93 (359)
Q Consensus 28 ~~~~I~vi~GDGIGpEV~~~a~~vl~~~-------~~~ie~~~~~~g~~-~----~--~lp~et~~~~~~~da~l~G~~~ 93 (359)
.+++|++|||||||||||+++++||+++ +++|+|+++++|.+ + + ++|++++++|+++|++||||++
T Consensus 25 ~~~~I~vipGDGIGpEV~~aa~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~~~lp~etl~~~k~~da~lkGav~ 104 (429)
T 2d4v_A 25 DQPIIPFIEGDGIGCDVTPAMRSVVDAAVAKVYGGQRQIAWMELFAGQKAVQLYGEGQYLPDETMAAIREYKVAIKGPLE 104 (429)
T ss_dssp SSBEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEECCTHHHHHHHCTTCSSCHHHHHHHHHHCEEEECCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHHHhhcCCCCceEEEEEeeehhhhhccCCCCCCcHHHHHHHHHCCEEEECCcc
Confidence 4589999999999999999999999997 38999999999976 3 3 7999999999999999999999
Q ss_pred CCCCCCcccchHHHHhhcCcEEEEEEeecCCCCCCCcc---cccEEEEecCCcceEeccceee-----------------
Q 018224 94 TPVGGGVSSLNVQLRKELDLYAALVNCFNLPGLPTRHQ---NVDIVVIRENTEGEYSGLEHEV----------------- 153 (359)
Q Consensus 94 ~p~~~~~~s~~~~LR~~ldlyanvRP~~~~pg~~~~~~---~iDivivREnteG~Y~g~~~~~----------------- 153 (359)
+|.+++++|+|++||+.||||+|+|||+++||+++|++ ++|||||||||||+|+|.+++.
T Consensus 105 tP~~~~~~s~~l~LRk~LdLyanvRPv~~~~gv~splk~~~~vDivIvREnTeg~Y~G~e~~~~~~~~~~v~~~~~~~~~ 184 (429)
T 2d4v_A 105 TPVGGGIRSLNVAMRQDLDLYVCLRPVRYFEGTPSPMRHPEKVDMVIFRENSEDIYAGIEWPAGSPEAEKIIRFLREEMG 184 (429)
T ss_dssp CCSSSSSCCHHHHHHHHTTCCEEEEEEECCTTCCCSBSCGGGCEEEEEEECSCGGGGCCEECTTCHHHHHHHHHHHHTSC
T ss_pred CCCcccccChhHHHHHHcCCEEEEEEEEecCCCCCCCCCcCCCCEEEEEeCCCCeecCcccccCCcccccceeccccccc
Confidence 99877889999999999999999999999999999885 6999999999999999998753
Q ss_pred ------eCCEEEEEEeecHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHh-hCCc---------
Q 018224 154 ------VPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVAT-KYPS--------- 217 (359)
Q Consensus 154 ------~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~-eypd--------- 217 (359)
.+++++++++|||+++|||+|+||+||++|++++||+|||+||||.|+|+|+++|+||++ +||+
T Consensus 185 ~~~~~~~~~~a~~~~~~T~~~~eRIar~AFe~A~~r~rkkVT~v~KaNVlk~tdGlf~~~~~eva~~eypd~~~~~~~~~ 264 (429)
T 2d4v_A 185 VTKIRFPDSSAIGIKPVSTEGSERLIRRTIQYALEHGKPSVSLVHKGNIMKFTEGGFRDWGYALAEREFAGRVFTWRQKA 264 (429)
T ss_dssp CCCCSCGGGEEEEEEEEEHHHHHHHHHHHHHHHHHTTCSEEEEEECTTTSTTTHHHHHHHHHHHHHHHSTTTEEEHHHHH
T ss_pred cccccCCCceEEEEEEecHHHHHHHHHHHHHHHHhcCCCeEEEEECCccchhhhHHHHHHHHHHHHHhCCCccccccccc
Confidence 236899999999999999999999999999888999999999999999999999999997 9999
Q ss_pred -----------------------eeeceeeHhHHHHHHHhCCCCccEEEeCCcchhhHHHhhhhhcCCCCccceeeeCCC
Q 018224 218 -----------------------IKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGGNVGAD 274 (359)
Q Consensus 218 -----------------------I~~~~~~vD~~~~~Lv~~P~~fdViv~~NlfGDILSDlaa~l~GglGl~psanig~~ 274 (359)
|+++|++||+++||||++|++||||||+|||||||||++|+++||+||+||+|+|++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~vD~~~mqlv~~P~~fDVivt~NlfGDILSD~aA~l~GslGl~pSanig~~ 344 (429)
T 2d4v_A 265 AISKAEGKAAGQKAEQQAIADGKLIIKDVIADNFLQQILLRPEDYSVVATLNLNGDYVSDALAAEVGGIGMAPGANLSDT 344 (429)
T ss_dssp HHHHHHCHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHCGGGCCEEEECHHHHHHHHHHHHHHTTCGGGCCCEEECSS
T ss_pred cccccccccccchhccccccCCeeEEEEeeHHHHHHHHhhCcccCcEEEECCcccHHHHHHHHHhcCCHhhcCeeEECCC
Confidence 999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEeccccCCCCCcccccccccCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHcCcccCCCCCC------CCcHH
Q 018224 275 TAVFEQGASAGNVGNEKVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEEKYRTKDLGG------GCTTQ 348 (359)
Q Consensus 275 ~a~FEp~~~~~HGsApdiaGk~~ANP~a~Ils~ammL~~lg~~~~A~~i~~Av~~~l~~g~~~T~Dlgg------~~~T~ 348 (359)
++||||+ |||||||||||+|||+|+|||++|||+|||+.++|++|++||.+++++| ++|+|||| .+||+
T Consensus 345 ~a~fEpv----HGSAPdiAGk~iANP~A~IlS~amML~hlg~~~~A~~Ie~Av~~~l~~g-~~T~Dlg~~~~g~~~~~T~ 419 (429)
T 2d4v_A 345 HAIFEAT----HGTAPDIAGQGKANPSSLILSAVMMLEHLGWGEAAQAIVAAMNATIAAG-EVTGDLAALRGDVPALSTT 419 (429)
T ss_dssp CEEEECS----CCCCTTTTTTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CEEHHHHTTCTTCCEECHH
T ss_pred ceEEecC----CCChhHhcCCCCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcC-CccccccccCCCCCCcCHH
Confidence 9999999 9999999999999999999999999999999999999999999999999 68999974 47999
Q ss_pred HHHHHHHHhc
Q 018224 349 QIVDAVIANL 358 (359)
Q Consensus 349 e~~~av~~~l 358 (359)
||+++|+++|
T Consensus 420 e~~daV~~~l 429 (429)
T 2d4v_A 420 EFTAALIRRF 429 (429)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHhhC
Confidence 9999999876
No 22
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A*
Probab=100.00 E-value=3.8e-109 Score=832.26 Aligned_cols=325 Identities=34% Similarity=0.527 Sum_probs=310.1
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHHHHHc-------CCCeeEEEEEecCc-cc----CCcHHHHHHHHhcCceeeccccCC
Q 018224 28 SPRAVTLIPGDGIGPLVTNAVEQVMEAM-------HAPIYFEKYEVHGD-MK----RVPQQVLDSIRKNKVCLKGGLKTP 95 (359)
Q Consensus 28 ~~~~I~vi~GDGIGpEV~~~a~~vl~~~-------~~~ie~~~~~~g~~-~~----~lp~et~~~~~~~da~l~G~~~~p 95 (359)
.+++|++|||||||||||+++++||+++ +++|+|+++++|.+ ++ ++|++|+++|+++|++||||+++|
T Consensus 34 ~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~etl~~~k~~da~LkGav~tP 113 (435)
T 1tyo_A 34 DNPVVAFIRGDGVGPEVVESALKVVDAAVKKVYGGSRRIVWWELLAGHLAREKCGELLPKATLEGIRLARVALKGPLETP 113 (435)
T ss_dssp SSBEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEECCCSHHHHHHHSSSSCHHHHHHHHHHSEEEECCCCCC
T ss_pred CCCEEEEECCCCcCHHHHHHHHHHHHHHHHhhcCCCcceEEEEEechHHHHHhhCCcCCHHHHHHHHhCCeEEECCccCC
Confidence 3589999999999999999999999997 38999999999976 43 899999999999999999999999
Q ss_pred CCCCcccchHHHHhhcCcEEEEEEeecCCCCCCCcc---cccEEEEecCCcceEeccceee-------------------
Q 018224 96 VGGGVSSLNVQLRKELDLYAALVNCFNLPGLPTRHQ---NVDIVVIRENTEGEYSGLEHEV------------------- 153 (359)
Q Consensus 96 ~~~~~~s~~~~LR~~ldlyanvRP~~~~pg~~~~~~---~iDivivREnteG~Y~g~~~~~------------------- 153 (359)
.+++++|+|++||+.||||+|+|||+++ |+++|++ ++|||||||||||+|+|.+++.
T Consensus 114 ~~~~~~s~~l~LRk~LdlyanlRPv~~~-gv~splk~~~~vDivIvREnTeg~Y~G~e~~~~~~~~~~v~~~~~~~~~~~ 192 (435)
T 1tyo_A 114 VGTGYRSLNVAIRQALDLYANIRPVRYY-GQPAPHKYADRVDMVIFRENTEDVYAGIEWPHDSPEAARIRRFLAEEFGIS 192 (435)
T ss_dssp TTSCTTHHHHHHHHHHTCCEEEEEEECC-SCCCSBTTGGGCEEEEEEECSSSGGGCCEECTTSHHHHHHHHHHHHHHCCC
T ss_pred CcccccChhHHHHHHcCCEEEeEEEEec-CCCCCCCCcCCCcEEEEecCCCCeecccccccCCccccceeccchhhcccc
Confidence 8778899999999999999999999999 9999985 6999999999999999998742
Q ss_pred -eCCEEEEEEeecHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHh-hCCc--------------
Q 018224 154 -VPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVAT-KYPS-------------- 217 (359)
Q Consensus 154 -~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~-eypd-------------- 217 (359)
.+++++++++||+++++||+|+||+||++|+|++||+|||+|||+.|+|+|+++|+||++ +||+
T Consensus 193 ~~~~~a~~~~~~T~~~~eRIar~AFe~A~~r~rkkVT~v~KaNVlk~tdGlf~~~~~eva~~eypd~~~~e~~~~~~~~~ 272 (435)
T 1tyo_A 193 IREDAGIGVKPISRFATRRLMERALEWALRNGNTVVTIMHKGNIMKYTEGAFMRWAYEVALEKFREHVVTEQEVQEKYGG 272 (435)
T ss_dssp CCTTEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEEECTTTSTTTHHHHHHHHHHHHHHHSGGGEEEHHHHHHHSTT
T ss_pred CCCCeEEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhhhHHHHHHHHHHHHHhCCCcccccccccccccc
Confidence 347899999999999999999999999999889999999999999999999999999997 9999
Q ss_pred ------eeeceeeHhHHHHHHHhCCCCccEEEeCCcchhhHHHhhhhhcCCCCccceeeeCCCcceEeccccCCCCCccc
Q 018224 218 ------IKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGGNVGADTAVFEQGASAGNVGNEK 291 (359)
Q Consensus 218 ------I~~~~~~vD~~~~~Lv~~P~~fdViv~~NlfGDILSDlaa~l~GglGl~psanig~~~a~FEp~~~~~HGsApd 291 (359)
|+++|++||+|+||||++|++||||||+|||||||||++|+++||+||+||+|+|++.+||||+ ||||||
T Consensus 273 ~~~~~~I~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDILSD~aA~l~GslGlapSanig~~~a~fEpv----HGSAPd 348 (435)
T 1tyo_A 273 VRPEGKILVNDRIADNMLQQIITRPWDYQVIVAPNLNGDYISDAASALVGGIGMAAGMNMGDGIAVAEPV----HGTAPK 348 (435)
T ss_dssp CCCTTCEEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCGGGCEEEEECSSCEEEEES----SCCCGG
T ss_pred cccCCeEEEEeeeHHHHHHHHhhCCCCceEEEEcccchHHHHHHHHhhcCCcccCceeeECCCceeeecC----CCChHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred ccccccCChhHHHHHHHHHH-hhcCCHHHHHHHHHHHHHHHHcCcccCCCCCC------CCcHHHHHHHHHHhc
Q 018224 292 VVEQKKANPVALLLSSAMML-RHLQFPSFADRLETAVKRVISEEKYRTKDLGG------GCTTQQIVDAVIANL 358 (359)
Q Consensus 292 iaGk~~ANP~a~Ils~ammL-~~lg~~~~A~~i~~Av~~~l~~g~~~T~Dlgg------~~~T~e~~~av~~~l 358 (359)
|||||+|||+|+|||++||| +|||++++|++|++||.+++++| ++|+|||| .+||+||+++|+++|
T Consensus 349 iAGk~iANP~A~IlS~amML~~hlg~~~~A~~Ie~Av~~~l~~g-~~T~Dlgg~~~g~~~~~T~e~~daV~~~l 421 (435)
T 1tyo_A 349 YAGKDLINPSAEILSASLLIGEFMGWREVKSIVEYAIRKAVQSK-KVTQDLARHMPGVQPLRTSEYTETLIAYI 421 (435)
T ss_dssp GTTSSCSCCHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHTT-CCBHHHHTTSTTCCCBCHHHHHHHHHHHH
T ss_pred hcCCCCcCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcC-CcCccccccCCCCCCcCHHHHHHHHHHHH
Confidence 99999999999999999999 99999999999999999999999 68999986 579999999999987
No 23
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics; 2.25A {Sinorhizobium meliloti}
Probab=100.00 E-value=1e-103 Score=791.88 Aligned_cols=335 Identities=19% Similarity=0.197 Sum_probs=300.5
Q ss_pred hcccccCCCC-CCCCcceEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEecCc-cc----CCcHHHHHHHHhcCcee
Q 018224 15 TRSVTYMPRP-GDGSPRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGD-MK----RVPQQVLDSIRKNKVCL 88 (359)
Q Consensus 15 ~~~~~~~~~~-~~~~~~~I~vi~GDGIGpEV~~~a~~vl~~~~~~ie~~~~~~g~~-~~----~lp~et~~~~~~~da~l 88 (359)
+-|++|...+ |-+-+++|++|||||||||||+++++||++.+++|+|+++++|.+ ++ ++|++++++|+++|++|
T Consensus 15 ~~~~~~~~~~~~i~~~~~I~vipGDGIGpEI~~~~~~vL~~~~~~i~~~~~~~G~~~~~~tg~~lp~etl~aik~~da~L 94 (427)
T 3us8_A 15 TENLYFQSMMAKIKVANPVVELDGDEMTRIIWQFIKDKLIHPYLDLDLEYYDLGVENRDATDDQVTIDAANAIKKHGVGV 94 (427)
T ss_dssp ----------CCEECCSCEEEEECCHHHHHHHHHHHHHHTTTTEECCEEEEECCHHHHHHTTTHHHHHHHHHHHHHSEEE
T ss_pred cceEEeecccccccccceEEEEcCCcccHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHhhCCcCCHHHHHHHHHCCEEE
Confidence 4466655433 222368999999999999999999999999999999999999976 43 89999999999999999
Q ss_pred eccccCCCC---------CCcccchHHHHhhcCcEEEEEEeecCCCCCCCcc--cccEEEEecCCcceEeccceeee---
Q 018224 89 KGGLKTPVG---------GGVSSLNVQLRKELDLYAALVNCFNLPGLPTRHQ--NVDIVVIRENTEGEYSGLEHEVV--- 154 (359)
Q Consensus 89 ~G~~~~p~~---------~~~~s~~~~LR~~ldlyanvRP~~~~pg~~~~~~--~iDivivREnteG~Y~g~~~~~~--- 154 (359)
|||+++|.. ++++|+|++||+.||||+|+||+ .+++++++.+ ++|||||||||||+|+|.++...
T Consensus 95 kGav~tP~~~~~~e~~l~~~~~s~n~~LRk~LdlyanvRPv-~~~~ip~~~~~~~~DivIvREnteg~Y~g~e~~~~~~~ 173 (427)
T 3us8_A 95 KCATITPDEGRVEEFKLKKMWKSPNGTIRNILGGVIFREPI-ICKNVPRLVPGWTKPIIVGRHAFGDQYRATDFKFPGKG 173 (427)
T ss_dssp ECCCCCCCHHHHHHHTCSSCCCCHHHHHHHHHCSEEEEEEC-CCTTSCCSSTTCCSCEEEEEECSSGGGGCEEEEECSSE
T ss_pred ECCccCCCccccccccccccccCchHHHHHHhCCeEEecce-eccCCCCCCCCCCCCEEEEEeCCCCccCCceeEEecCC
Confidence 999999963 56889999999999999999999 6777766553 59999999999999999987642
Q ss_pred -----------------------CCEEEEEEeecHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHH
Q 018224 155 -----------------------PGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREV 211 (359)
Q Consensus 155 -----------------------~~va~~~~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~ev 211 (359)
++++ ...++|++++|||+|+||+||++| +++||+|||+||||.+||+|+++|+||
T Consensus 174 ~~~l~~~~~~G~~~~~~~~~~~~~~va-~~~~~T~~~~eRiar~AFe~A~~r-~kkVt~v~KaNIlk~tdglfr~~~~ev 251 (427)
T 3us8_A 174 KLSIKFVGEDGQTIEHDVYDAPGAGVA-LAMYNLDESITEFARASFNYGLQR-KVPVYLSTKNTILKAYDGRFKDIFQKV 251 (427)
T ss_dssp EEEEEEEETTSCEEEEEEEEESSCEEE-EEEEEEHHHHHHHHHHHHHHHHHH-TCCEEEEECTTTSTTHHHHHHHHHHHH
T ss_pred cceeeeeccccccccccccccCCCcEE-EEEeeCHHHHHHHHHHHHHHHHHc-CCcEEEEECcccchhhhhHHHHHHHHH
Confidence 2345 567889999999999999999998 578999999999999999999999999
Q ss_pred Hh-hCC------ceeeceeeHhHHHHHHHhCCCCccEEEeCCcchhhHHHhhhhhcCCCCccceeeeCCCc--ceEeccc
Q 018224 212 AT-KYP------SIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGGNVGADT--AVFEQGA 282 (359)
Q Consensus 212 a~-eyp------dI~~~~~~vD~~~~~Lv~~P~~fdViv~~NlfGDILSDlaa~l~GglGl~psanig~~~--a~FEp~~ 282 (359)
++ +|| +|+++|++||+|+||||++|++| ||||+|||||||||++|+++||+||+||+|+|++. +||||+
T Consensus 252 a~~eYp~~~~~~~I~~~~~~VD~~~mqlv~~P~~F-Vivt~NlfGDIlSD~aA~l~GslGl~pSanig~~~~~a~fEp~- 329 (427)
T 3us8_A 252 FDEEFAAQFKAEKLWYEHRLIDDMVASALKWSGGY-VWACKNYDGDVQSDIVAQGFGSLGLMTSVLMTPDGKTVEAEAA- 329 (427)
T ss_dssp HHHHTHHHHHHTTCCEEEEEHHHHHHHHHHSCCCE-EEEECHHHHHHHHHHHHHHHSCTTSEEEEEECTTSCCEEEECC-
T ss_pred HHHhCccccCCCCeEEEEEEHHHHHHHHhhCCCCc-EEEeCCcCCcHHHHHHHHhcCChhhCceeEECCCCCeEEEeCC-
Confidence 88 896 99999999999999999999999 99999999999999999999999999999999775 999999
Q ss_pred cCCCCCccc-----cccccc-CChhHHHHHHHHHHhhcCC-------HHHHHHHHHHHHHHHHcCcccCCCCCC------
Q 018224 283 SAGNVGNEK-----VVEQKK-ANPVALLLSSAMMLRHLQF-------PSFADRLETAVKRVISEEKYRTKDLGG------ 343 (359)
Q Consensus 283 ~~~HGsApd-----iaGk~~-ANP~a~Ils~ammL~~lg~-------~~~A~~i~~Av~~~l~~g~~~T~Dlgg------ 343 (359)
|||||| |||||+ |||+|+|||++|||+|||+ .++|++|++||.+++++| ++|+||||
T Consensus 330 ---HGSAPd~~~~~iAGk~i~ANP~A~IlS~ammL~hlG~~~~~~~l~~~A~~Ie~Av~~~l~~g-~~T~Dlgg~~~~~~ 405 (427)
T 3us8_A 330 ---HGTVTRHYRQHQKGEETSTNSIASIFAWTRGLAHRAKLDGNAELAKFSETLERVCVDTVESG-FMTKDLALLIGPDQ 405 (427)
T ss_dssp ---SCCCHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTT-CCBHHHHHHHCTTC
T ss_pred ---CCCcCCccchhcCCCCceeCHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHcC-CcCcccccccccCC
Confidence 999999 999998 9999999999999999997 789999999999999999 69999988
Q ss_pred -CCcHHHHHHHHHHhc
Q 018224 344 -GCTTQQIVDAVIANL 358 (359)
Q Consensus 344 -~~~T~e~~~av~~~l 358 (359)
.+||+||+|+|+++|
T Consensus 406 ~~~~T~e~~daV~~~l 421 (427)
T 3us8_A 406 PWLSTTGFLDKIDENL 421 (427)
T ss_dssp CCBCHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHH
Confidence 799999999999987
No 24
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A*
Probab=100.00 E-value=8.9e-103 Score=781.72 Aligned_cols=323 Identities=19% Similarity=0.189 Sum_probs=299.5
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEecCc-cc----CCcHHHHHHHHhcCceeeccccCCCC-----
Q 018224 28 SPRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGD-MK----RVPQQVLDSIRKNKVCLKGGLKTPVG----- 97 (359)
Q Consensus 28 ~~~~I~vi~GDGIGpEV~~~a~~vl~~~~~~ie~~~~~~g~~-~~----~lp~et~~~~~~~da~l~G~~~~p~~----- 97 (359)
-+++|++|||||||||||++++++|++++++++|+++++|.+ ++ ++|++++++|+++|++||||+++|..
T Consensus 5 ~~~~i~~i~GDgig~ei~~~~~~vl~~~~~~~~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkGav~tP~~~~~~~ 84 (402)
T 2uxq_A 5 MKTPLVELDGDEMTRVLWPLIKDKLLLPFIDLQTEYYDLGIEERDRTNDQITIDAAEAIKKYGVGVKNATITPNQDRVEE 84 (402)
T ss_dssp CSSCEEEEECCHHHHHHHHHHHHHHTTTTBCCCEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCHHHHHH
T ss_pred eecceEEecCCCccHHHHHHHHHHHHhCCCCeEEEEEecCHHHHHhhCCcCCHHHHHHHHhCCEEEECCccCCCcccCcc
Confidence 358999999999999999999999999999999999999986 43 89999999999999999999999952
Q ss_pred ----CCcccchHHHHhhcCcEEEEEEeecCCCCCCCcc--cccEEEEecCCcceEeccceee------------------
Q 018224 98 ----GGVSSLNVQLRKELDLYAALVNCFNLPGLPTRHQ--NVDIVVIRENTEGEYSGLEHEV------------------ 153 (359)
Q Consensus 98 ----~~~~s~~~~LR~~ldlyanvRP~~~~pg~~~~~~--~iDivivREnteG~Y~g~~~~~------------------ 153 (359)
++++|+|++||+.||||+|+|||+ +|+++++++ ++||||+||||||+|+|.++..
T Consensus 85 ~~~~~~~~s~~l~LR~~ldlyan~RPv~-~~~~~~~~~~~~~divIvRE~teg~Y~g~e~~~~~~g~~~~~~~~~~g~~~ 163 (402)
T 2uxq_A 85 YGLKEQWKSPNATVRAMLDGTVFRKPIM-VKNIKPSVRSWQKPIVVGRHAYGDFYKNAEIFAEAGGKLEIVVTDKNGKET 163 (402)
T ss_dssp HTCSSCCCCHHHHHHHHHCCEEEEEECC-CTTCCCSBTTCCSCCEEEEECSCGGGGCEEEEETTCEEEEEEEECTTSCEE
T ss_pred ccccccccCchHHHHHHhCCeEEEEEEE-cCCCCCCCCCCCCCeEEEeccCCCcccCcceeeccCCcceeeeeccCCccc
Confidence 367899999999999999999999 799987764 5999999999999999876653
Q ss_pred -------eCCEEEEEEeecHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHH-hhCCc------ee
Q 018224 154 -------VPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVA-TKYPS------IK 219 (359)
Q Consensus 154 -------~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva-~eypd------I~ 219 (359)
..+.+....++|+++++||+|+||+||++| +++||+|||+|||+.|||+|+++|+||+ ++||+ |+
T Consensus 164 ~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r-~~kVt~v~KaNVlk~sdglf~~~~~eva~~eypd~~~~~~I~ 242 (402)
T 2uxq_A 164 RQTIMEVDEPAIVQGIHNTVASIGHFARACFEYSLDQ-KIDCWFATKDTISKQYDQRFKIIFEEIFAQEYKEKFAAAGIE 242 (402)
T ss_dssp EEEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHH-TCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHHHHHTCC
T ss_pred cccccccCCCceEEEEEECHHHHHHHHHHHHHHHHHc-CCcEEEEECCCcchhhHHHHHHHHHHHHHHhCCCcccCCeEE
Confidence 013445556799999999999999999998 6789999999999999999999999999 79999 99
Q ss_pred eceeeHhHHHHHHHhCCCCccEEEeCCcchhhHHHhhhhhcCCCCccceeeeCCCc-ceEeccccCCCCCcccc-----c
Q 018224 220 YNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGGNVGADT-AVFEQGASAGNVGNEKV-----V 293 (359)
Q Consensus 220 ~~~~~vD~~~~~Lv~~P~~fdViv~~NlfGDILSDlaa~l~GglGl~psanig~~~-a~FEp~~~~~HGsApdi-----a 293 (359)
++|++||+|+||||++|++| ||||+|||||||||++|+++||+||+||+|+|++. +||||+ ||||||| |
T Consensus 243 ~~~~~vD~~~mqlv~~P~~f-Vivt~NlfGDIlSD~aA~l~GslGl~pSanig~~~~~lfEpv----HGSAPdi~~~~~a 317 (402)
T 2uxq_A 243 YFYTLIDDVVARMMKTEGGM-LWACKNYDGDVMSDMVASAFGSLAMMSSVLVSPYGYFEYEAA----HGTVQRHYYQHLK 317 (402)
T ss_dssp EEEEEHHHHHHHHTTCCCCS-EEEECHHHHHHHHHHHHHHHTCTTSEEEEEECTTSCEEEECC----SCCCHHHHHHHHT
T ss_pred EEEEEHHHHHHHHccCCCce-EEEEcccchHHHHHHHHHhcCCccccccceecCCCCeEEeCC----CCChhhhhhhhhc
Confidence 99999999999999999999 99999999999999999999999999999999886 899999 9999998 9
Q ss_pred cccc-CChhHHHHHHHHHHhhcCCHH-------HHHHHHHHHHHHHHcCcccCCCCCC--------CCcHHHHHHHHHHh
Q 018224 294 EQKK-ANPVALLLSSAMMLRHLQFPS-------FADRLETAVKRVISEEKYRTKDLGG--------GCTTQQIVDAVIAN 357 (359)
Q Consensus 294 Gk~~-ANP~a~Ils~ammL~~lg~~~-------~A~~i~~Av~~~l~~g~~~T~Dlgg--------~~~T~e~~~av~~~ 357 (359)
|||+ |||+|+|||++|||+|||+.+ +|++|++||.+++++| ++|+|||| .+||+||+|+|+++
T Consensus 318 Gk~~~ANP~A~IlS~ammL~~lg~~~~~~~l~~~A~~Ie~Av~~~l~~G-~~T~Dlgg~~~g~~~~~~~T~e~~daI~~~ 396 (402)
T 2uxq_A 318 GERTSTNPVALIYAWTGALRKRGELDGTPDLCAFCDSLEAITIECIESG-YMTGDLARICEPAAIKVLDSIEFIDELGKR 396 (402)
T ss_dssp TCCCCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTT-EECHHHHTTCSSCCSEECCHHHHHHHHHHH
T ss_pred CCCcccCcHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHHcC-CcCccccccCCCCCCCCcCHHHHHHHHHHH
Confidence 9996 999999999999999999866 7999999999999999 79999976 58999999999998
Q ss_pred c
Q 018224 358 L 358 (359)
Q Consensus 358 l 358 (359)
|
T Consensus 397 l 397 (402)
T 2uxq_A 397 L 397 (402)
T ss_dssp H
T ss_pred H
Confidence 7
No 25
>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase, NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB: 1t0l_A* 1t09_A* 3mas_B* 3map_A* 3mar_A* 3mas_A* 3inm_A* 2cmj_A* 2cmv_A*
Probab=100.00 E-value=1.6e-100 Score=767.74 Aligned_cols=322 Identities=21% Similarity=0.222 Sum_probs=296.3
Q ss_pred cceEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEecCc-cc----CCcHHHHHHHHhcCceeeccccCCCC------
Q 018224 29 PRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGD-MK----RVPQQVLDSIRKNKVCLKGGLKTPVG------ 97 (359)
Q Consensus 29 ~~~I~vi~GDGIGpEV~~~a~~vl~~~~~~ie~~~~~~g~~-~~----~lp~et~~~~~~~da~l~G~~~~p~~------ 97 (359)
+++|++|||||||||||++++++|.+.+++++|+++++|++ ++ ++|++++++|+++|++||||+++|..
T Consensus 8 ~~~i~~l~GDgiGpei~~~~~~vl~~~~~~~~~~~~~~G~~~~~~~g~~lp~etl~~ik~~da~LkGav~tP~~~~~~~~ 87 (413)
T 1lwd_A 8 AKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDEARVEEF 87 (413)
T ss_dssp SSCEEEEECCHHHHHHHHHHHHHTTTTTEECCEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCHHHHHHH
T ss_pred cccEEEecCCChhHHHHHHHHHHHHhCCCCeEEEEEecCHHHHhccCCcCcHHHHHHHHHCCEEEECCccCCCcccCccc
Confidence 47899999999999999999999998899999999999986 43 89999999999999999999999952
Q ss_pred ---CCcccchHHHHhhcCcEEEEEEeecCCCCCCCcc--cccEEEEecCCcceEeccceeee------------------
Q 018224 98 ---GGVSSLNVQLRKELDLYAALVNCFNLPGLPTRHQ--NVDIVVIRENTEGEYSGLEHEVV------------------ 154 (359)
Q Consensus 98 ---~~~~s~~~~LR~~ldlyanvRP~~~~pg~~~~~~--~iDivivREnteG~Y~g~~~~~~------------------ 154 (359)
++++|+|++||+.||||+|+|||+. ++++++.+ ++|++|+||||||+|+|.++...
T Consensus 88 ~~~~~~~s~~l~LR~~ldlyan~RPv~~-~~~~~~~~~~~~divIvRe~t~g~Y~g~d~~~~~e~~~~~~~~~~~g~~~~ 166 (413)
T 1lwd_A 88 KLKKMWKSPNGTIRNILGGTVFREPIIC-KNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPKDGSSAK 166 (413)
T ss_dssp TCSSCCCCHHHHHHHHHCSEEEEEECCC-TTSCCSSTTCCSCEEEEEECSSGGGGCEEEEECSSEEEEEEEEETTCCCCE
T ss_pred cccccccCccHHHHHhcCCEEEEeeeec-cCCCCCCCCCCCceEEEecccCCccCCceeEeccCCcceeeEeccCCcccc
Confidence 2577999999999999999999975 77766543 59999999999999998654420
Q ss_pred --------CCEEEEEEeecHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHH-hhCCc------ee
Q 018224 155 --------PGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVA-TKYPS------IK 219 (359)
Q Consensus 155 --------~~va~~~~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva-~eypd------I~ 219 (359)
.+.+....+||+++++||+|+||+||++| +++||+|||+|||+.|||||+++|+||+ ++||+ |+
T Consensus 167 ~~~~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r-~~kVt~v~KaNVlk~sdglf~~~~~eva~~eypd~~~~~~I~ 245 (413)
T 1lwd_A 167 QWEVYNFPAGGVGMGMYNTDESISGFAHSCFQYAIQK-KWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFDKYKIW 245 (413)
T ss_dssp EEEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHH-TCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHHHHTTCC
T ss_pred cccccccCCCcEEEEEEEcHHHHHHHHHHHHHHHHHh-CCceEEEECCcchhhHHHHHHHHHHHHHHHhCCCcccCCeEE
Confidence 23455667999999999999999999998 6789999999999999999999999999 79999 99
Q ss_pred eceeeHhHHHHHHHhCCCCccEEEeCCcchhhHHHhhhhhcCCCCccceeeeCCCc--ceEeccccCCCCCcccc-----
Q 018224 220 YNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGGNVGADT--AVFEQGASAGNVGNEKV----- 292 (359)
Q Consensus 220 ~~~~~vD~~~~~Lv~~P~~fdViv~~NlfGDILSDlaa~l~GglGl~psanig~~~--a~FEp~~~~~HGsApdi----- 292 (359)
++|++||+|+||||++|++| ||||+|||||||||++|+++|||||+||+|+|++. +||||+ |||||||
T Consensus 246 ~~~~~VD~~~mqlv~~P~~F-Vivt~NlfGDILSD~aA~l~GslGl~pSanig~~~~~~~fEpv----HGSAPdi~~~~~ 320 (413)
T 1lwd_A 246 YEHRLIDDMVAQVLKSSGGF-VWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAA----HGTVTRHYREHQ 320 (413)
T ss_dssp EEEEEHHHHHHHHHHSCCCE-EEEECHHHHHHHHHHHHHHHTCTTSEEEEEECTTSSCEEEECC----SCCCHHHHHHHH
T ss_pred EEEEEHHHHHHHHhcCCCce-EEEecccccchHHHHHHhhcCCccccccceeCCCCCceEEeCC----CCChhhhhhhhh
Confidence 99999999999999999999 99999999999999999999999999999999875 899999 9999999
Q ss_pred ccccc-CChhHHHHHHHHHHhhcCCHH-------HHHHHHHHHHHHHHcCcccCCCCC----C---------CCcHHHHH
Q 018224 293 VEQKK-ANPVALLLSSAMMLRHLQFPS-------FADRLETAVKRVISEEKYRTKDLG----G---------GCTTQQIV 351 (359)
Q Consensus 293 aGk~~-ANP~a~Ils~ammL~~lg~~~-------~A~~i~~Av~~~l~~g~~~T~Dlg----g---------~~~T~e~~ 351 (359)
||||+ |||+|+|||++|||+|||+.+ +|++|++||.+++++| ++|+||| | .+||+||+
T Consensus 321 aGk~~~ANP~A~IlS~ammL~~lg~~~~~~~l~~~A~~Ie~Av~~~l~~G-~~T~Dlg~~~~G~~~~~~~~~~~~T~e~~ 399 (413)
T 1lwd_A 321 KGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVETVESG-AMTKDLAGCIHGLSNVKLNEHFLNTSDFL 399 (413)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTT-CCCHHHHHHHHCTTSCCBTTTBCCHHHHH
T ss_pred cCCCCccChHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHHcC-CcCcccccccCCcccccccCCCCCHHHHH
Confidence 99996 999999999999999999875 8999999999999999 7999996 5 57999999
Q ss_pred HHHHHhc
Q 018224 352 DAVIANL 358 (359)
Q Consensus 352 ~av~~~l 358 (359)
|+|+++|
T Consensus 400 daV~~~l 406 (413)
T 1lwd_A 400 DTIKSNL 406 (413)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999987
No 26
>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline, thermostable, oxidoreductase; 2.24A {Thermotoga maritima}
Probab=100.00 E-value=3.9e-100 Score=762.33 Aligned_cols=322 Identities=20% Similarity=0.230 Sum_probs=296.3
Q ss_pred cceEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEecCc-cc----CCcHHHHHHHHhcCceeeccccCCCC------
Q 018224 29 PRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGD-MK----RVPQQVLDSIRKNKVCLKGGLKTPVG------ 97 (359)
Q Consensus 29 ~~~I~vi~GDGIGpEV~~~a~~vl~~~~~~ie~~~~~~g~~-~~----~lp~et~~~~~~~da~l~G~~~~p~~------ 97 (359)
+++|++|||||||||||++++++|++++++++|+++++|.+ ++ ++|++++++|+++|++||||+++|..
T Consensus 7 ~~~I~~l~GDgiG~ei~~~v~~~l~~~~~~~~~~~~~~G~~~~~~~g~~lp~etl~~ik~~da~lkGav~tP~~~~~~~~ 86 (399)
T 1zor_A 7 KNPIVELDGDEMARVMWKMIKEKLILPYLDIQLVYFDLGIKKRDETDDQITIEAAKAIKKYGVGVKCATITPDAERVKEY 86 (399)
T ss_dssp CSCEEEEECCHHHHHHHHHHHHHHTTTTEECCEEEEECCHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCHHHHHHH
T ss_pred cccEEEecCCcccHHHHHHHHHHHHhCCCCeEEEEEeCCHHHHhccCCcCcHHHHHHHHHCCEEEEcCccCCCcccCccc
Confidence 46899999999999999999999999999999999999986 43 89999999999999999999999952
Q ss_pred ---CCcccchHHHHhhcCcEEEEEEeecCCCCCCCcc--cccEEEEecCCcceEeccceee----------e--------
Q 018224 98 ---GGVSSLNVQLRKELDLYAALVNCFNLPGLPTRHQ--NVDIVVIRENTEGEYSGLEHEV----------V-------- 154 (359)
Q Consensus 98 ---~~~~s~~~~LR~~ldlyanvRP~~~~pg~~~~~~--~iDivivREnteG~Y~g~~~~~----------~-------- 154 (359)
++++|+|++||+.||||+|+||++ +|+++++++ .+|++|+||||||+|.+.++.. .
T Consensus 87 ~~~~~~~s~~l~LR~~ldlyan~RPv~-~~~~~~~~~~~~~divi~Re~t~g~Y~g~d~~~~~e~t~~~~y~~e~~~~~~ 165 (399)
T 1zor_A 87 NLKKAWKSPNATIRAYLDGTVFRKPIM-VKNVPPLVKRWKKPIIIGRHAYGDIYNAVEAKVEGPAEVELVVRNKENKTLL 165 (399)
T ss_dssp TCSSCCCCHHHHHHHHHTCEEEEEECC-BTTBCCSBTTCCSCCEEEECCSSGGGGCEEEEECSSEEEEEEEESSSCEEEE
T ss_pred cccccccCchHHHHHHhCCEEEEEEee-cCCCCCcccCcCccceeeecccCCCcCCceeEecCCCcceeeEeccccccce
Confidence 257899999999999999999999 899887664 4999999999999999876421 0
Q ss_pred -----CCEEEEEEeecHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHh----hCCc--eeecee
Q 018224 155 -----PGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVAT----KYPS--IKYNEI 223 (359)
Q Consensus 155 -----~~va~~~~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~----eypd--I~~~~~ 223 (359)
.+.+....++|+++++||+|+||+||++| +++||+|||+|||+.|||+|+++|+||++ +||+ |+++|+
T Consensus 166 ~~~~~~~~~~~~~~~T~~~~eRiar~AFe~A~~r-~~kVt~v~KaNvlk~sdglf~~~~~eva~~~~~~yp~~~I~~~~~ 244 (399)
T 1zor_A 166 VHKFEGNGVVMAMHNLEKSIRSFAQSCINYAISE-KVDIWFATKDTISKVYHAYFKDIFQEEVDKRKEELEKAGVNYRYM 244 (399)
T ss_dssp EEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHH-TCCEEEEECTTTCTTHHHHHHHHHHHHHHHTHHHHHHTTCCEEEE
T ss_pred eeccCCceEEEEEEecHHHHHHHHHHHHHHHHHh-CCeEEEEECcccHHHHHHHHHHHHHHHHHhhcccCCCCcEEEEEE
Confidence 13455556899999999999999999998 56899999999999999999999999987 8995 999999
Q ss_pred eHhHHHHHHHhCCCCccEEEeCCcchhhHHHhhhhhcCCCCccceeeeCCCc-ceEeccccCCCCCccc-----cccccc
Q 018224 224 IVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGGNVGADT-AVFEQGASAGNVGNEK-----VVEQKK 297 (359)
Q Consensus 224 ~vD~~~~~Lv~~P~~fdViv~~NlfGDILSDlaa~l~GglGl~psanig~~~-a~FEp~~~~~HGsApd-----iaGk~~ 297 (359)
+||+|+||||++|++| ||||+|||||||||++|+++||+||+||+|+|++. +||||+ |||||| |||||+
T Consensus 245 ~vD~~~mqlv~~P~~f-Vivt~NlfGDIlSD~aA~l~GslGl~pSanig~~~~~~fEpv----HGSAPdi~~~~iaGk~~ 319 (399)
T 1zor_A 245 LIDDAAAQILRSEGGM-LWACMNYEGDIMSDMIASGFGSLGLMTSVLVSPDGVYEFEAA----HGTVRRHYYRYLKGEKT 319 (399)
T ss_dssp EHHHHHHHHHHSCCCS-EEEECHHHHHHHHHHHHHHHCCGGGEEEEEECTTCCEEEEES----SCCCHHHHHHHTTTCCC
T ss_pred EHHHHHHHhccCCCce-EEEEccchHHHHHHHHHHhcCCccccceeEecCCCCeEEeCC----CCcccccchhhhcCCCC
Confidence 9999999999999999 99999999999999999999999999999999886 799999 999999 799995
Q ss_pred -CChhHHHHHHHHHHhhcCCH-------HHHHHHHHHHHHHHHcCcccCCCCCC--------CCcHHHHHHHHHHhc
Q 018224 298 -ANPVALLLSSAMMLRHLQFP-------SFADRLETAVKRVISEEKYRTKDLGG--------GCTTQQIVDAVIANL 358 (359)
Q Consensus 298 -ANP~a~Ils~ammL~~lg~~-------~~A~~i~~Av~~~l~~g~~~T~Dlgg--------~~~T~e~~~av~~~l 358 (359)
|||+|+|||++|||+|||+. ++|++|++||.+++++| ++|+|||| .+||+||+|+|+++|
T Consensus 320 ~ANP~A~IlS~ammL~~lg~~~~~~~l~~~A~~Ie~Av~~~l~~g-~~T~Dlgg~~~g~~~~~~~T~e~~daV~~~l 395 (399)
T 1zor_A 320 STNPTASIFAWTGAIRKRGELDGTPEVCEFADKLEKAVINTIESG-VITKDLQPFTEPPIDKYVTLEEFIDEVKKNL 395 (399)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTT-CCCGGGGGGCSSCCCCCCCHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHhcCcccccchHHHHHHHHHHHHHHHHHcC-CcCccccccCCCCCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999975 57999999999999999 79999975 489999999999987
No 27
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A
Probab=100.00 E-value=2.7e-99 Score=754.77 Aligned_cols=323 Identities=19% Similarity=0.188 Sum_probs=283.0
Q ss_pred cceEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEecCc-cc----CCcHHHHHHHHhcCceeeccccCCCC------
Q 018224 29 PRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGD-MK----RVPQQVLDSIRKNKVCLKGGLKTPVG------ 97 (359)
Q Consensus 29 ~~~I~vi~GDGIGpEV~~~a~~vl~~~~~~ie~~~~~~g~~-~~----~lp~et~~~~~~~da~l~G~~~~p~~------ 97 (359)
+++|++|||||||||+|+..+++|++.+++++|+++++|.+ ++ ++|++++++|+++|++||||++||..
T Consensus 7 ~~~i~~i~GDei~~e~~~~i~~v~~~~~~~i~~~~~d~G~~~~~~tg~~lp~etl~aik~~~v~lkGa~~tP~~~~~~~~ 86 (402)
T 4aoy_A 7 KVPLVEMDGDEMTRIIWRLIKENLLEPYIELNTEYYDLGLENRDKTEDQVTIDAARAIQKYGVGVKCATITPNAQRVEEY 86 (402)
T ss_dssp SSCEEEEECCHHHHHHHHHHHHHHTTTTEECCEEEEECCHHHHHHHTTHHHHHHHHHHHHHSEEEECCCCCCCHHHHHHT
T ss_pred cCcEEEECCCchHHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHhhCCcCCHHHHHHHHHCCEEEECcccCCCccccccc
Confidence 48899999999999999999999999999999999999986 43 89999999999999999999999963
Q ss_pred ---CCcccchHHHHhhcCcEEEEEEeecCCCCCCCcc--cccEEEEecCCcceEeccceeee------------------
Q 018224 98 ---GGVSSLNVQLRKELDLYAALVNCFNLPGLPTRHQ--NVDIVVIRENTEGEYSGLEHEVV------------------ 154 (359)
Q Consensus 98 ---~~~~s~~~~LR~~ldlyanvRP~~~~pg~~~~~~--~iDivivREnteG~Y~g~~~~~~------------------ 154 (359)
++++|+|++||+.||||+|+||| ++||++++++ ++|||||||||||+|+|.|++..
T Consensus 87 ~l~~~~~s~n~~LR~~Ldlyan~rPv-~~~~i~~~~~~~~~DivIvREnteg~Y~g~e~~~~~~~~~~~~~~~~~g~~~~ 165 (402)
T 4aoy_A 87 NLKKMWKSPNGTIRAILDGTVFRAPI-VVNSIKPFVKGWKKPISIARHAYGDVYKNVEYYVPSAGKAELVFTSENGEVSR 165 (402)
T ss_dssp TCSSCCCCHHHHHHHHHTCEEEEEEC-CCTTSCCSBTTCCBCCEEEEC------CCEEEEECSCEEEEEEEEETTSCEEE
T ss_pred cccccccChHHHHHHHhCCeEEeeeE-eccCCCCcCCCCCCCEEEEEeccCCeecCceeeccCccceeeeeeccCCcccc
Confidence 56889999999999999999999 8999999886 59999999999999999988652
Q ss_pred -------CCEEEEEEeecHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHh-hCC------ceee
Q 018224 155 -------PGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVAT-KYP------SIKY 220 (359)
Q Consensus 155 -------~~va~~~~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~-eyp------dI~~ 220 (359)
...+.....+|+++++||+|+||+||++|+ ++||+|||+||||.+||+|+++|+||++ +|| +|++
T Consensus 166 ~~~~~~~~~gv~~~~~~t~~~~eRiar~AF~~A~~~~-~~vt~v~KaNilk~tdglf~~~~~eva~~eyp~~~~~~~i~~ 244 (402)
T 4aoy_A 166 QTIHEFDGPGVIMGMHNTDKSIRSFARACFNYALDMN-QDLWFSTKDTISKTYDHRFKDIFQEIYENEYKEKFEAKNLQY 244 (402)
T ss_dssp EEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHHT-CCEEEEECTTTSHHHHHHHHHHHHHHHHHHTHHHHHHTTCCE
T ss_pred cccccccCCeeEEEEEecHHHHHHHHHHHHHHHHHcC-CcEEEEECCccchhhhhHHHHHHHHHHHHhCcccccCCCeEE
Confidence 112445677889999999999999999985 7899999999999999999999999987 898 9999
Q ss_pred ceeeHhHHHHHHHhCCCCccEEEeCCcchhhHHHhhhhhcCCCCccceeeeCCC-cceEeccccCCCCCccc-----ccc
Q 018224 221 NEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGGNVGAD-TAVFEQGASAGNVGNEK-----VVE 294 (359)
Q Consensus 221 ~~~~vD~~~~~Lv~~P~~fdViv~~NlfGDILSDlaa~l~GglGl~psanig~~-~a~FEp~~~~~HGsApd-----iaG 294 (359)
+|++||+++||||++|++| ||||+|||||||||++|+++||+||+||+|+|++ .++|||+ |||||| |+|
T Consensus 245 ~~~~vD~~~~~lv~~P~~f-Vivt~Nl~GDIlSD~~A~l~GslGl~psanig~~~~~~fEp~----HGSApd~~~~~iaG 319 (402)
T 4aoy_A 245 FYTLIDDAVARIIRSEGGM-VWACKNYDGDVMSDMVASAFGSLAMMTSVLVSPDGKYEFEAA----HGTVTRHYYKHLKG 319 (402)
T ss_dssp EEEEHHHHHHHHHTSCBCS-EEECCC-CHHHHHHHHHHHHSCTTSEEEEEECTTCCEEEEC-------------------
T ss_pred EEEEHHHHHHHHhhCCCCc-EEEECCcchHHHHHHHHHhcCchhhccccccCCCCceEEeec----cCCccccchhhccC
Confidence 9999999999999999999 9999999999999999999999999999999975 6899999 999999 899
Q ss_pred ccc-CChhHHHHHHHHHHhhcCC-------HHHHHHHHHHHHHHHHcCcccCCCCCCCC--------cHHHHHHHHHHhc
Q 018224 295 QKK-ANPVALLLSSAMMLRHLQF-------PSFADRLETAVKRVISEEKYRTKDLGGGC--------TTQQIVDAVIANL 358 (359)
Q Consensus 295 k~~-ANP~a~Ils~ammL~~lg~-------~~~A~~i~~Av~~~l~~g~~~T~Dlgg~~--------~T~e~~~av~~~l 358 (359)
|++ |||+|+|||++|||+|+|+ .++|++|++||.+++++| ++|+||||.+ ||+||+|+|+++|
T Consensus 320 k~~~aNP~A~Ils~a~mL~~~g~~~~~~~l~~~A~~ie~Av~~~l~~g-~~T~Dlgg~~~~~~~~~~~T~ef~~av~~~l 398 (402)
T 4aoy_A 320 EETSTNSMATIFAWTGALKKRGELDGIKELVDFATKLEQASVQTIENG-VMTKDLASLSEVPEKKIVNTEDFLKEIRKTF 398 (402)
T ss_dssp --CCCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT-EEEHHHHTTCCCSCCEEECHHHHHHHHHHHH
T ss_pred CCcCcCcHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHcC-CCCcccccccccCCCCCcCHHHHHHHHHHHH
Confidence 997 9999999999999999986 589999999999999999 6999999876 9999999999987
Q ss_pred C
Q 018224 359 D 359 (359)
Q Consensus 359 ~ 359 (359)
+
T Consensus 399 ~ 399 (402)
T 4aoy_A 399 E 399 (402)
T ss_dssp T
T ss_pred h
Confidence 4
No 28
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A*
Probab=100.00 E-value=6e-98 Score=751.45 Aligned_cols=322 Identities=21% Similarity=0.215 Sum_probs=292.0
Q ss_pred cceEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEecCc-cc----CCcHHHHHHHHhcCceeeccccCCCCC-----
Q 018224 29 PRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGD-MK----RVPQQVLDSIRKNKVCLKGGLKTPVGG----- 98 (359)
Q Consensus 29 ~~~I~vi~GDGIGpEV~~~a~~vl~~~~~~ie~~~~~~g~~-~~----~lp~et~~~~~~~da~l~G~~~~p~~~----- 98 (359)
+++|++||||||||||++++.+.+...+++++|+++++|++ ++ ++|++++++|+++|++||||+++|..+
T Consensus 22 ~~~I~~l~GDgig~evl~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~et~~ai~~~da~lkGav~tP~~~~~~e~ 101 (427)
T 2qfy_A 22 KQPVVELDGDEMTRIIWDKIKKKLILPYLDVDLKYYDLSVESRDATSDKITQDAAEAIKKYGVGIKCATITPDEARVKEF 101 (427)
T ss_dssp SSCEEEEECCHHHHHHHHHHHHHHTTTTEECCEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCHHHHHHT
T ss_pred eeeEEEecCCCHHHHHHHHHHHHhccCCCceEEEEEecChHHHhccCCcCcHHHHHHHHHCCEEEECCcCCCCCcccchh
Confidence 47899999999999999999988776789999999999987 43 899999999999999999999999532
Q ss_pred ----CcccchHHHHhhcCcEEEEEEeec--CC----CCCCCc-----------ccccEEEEecCCcceEe------ccc-
Q 018224 99 ----GVSSLNVQLRKELDLYAALVNCFN--LP----GLPTRH-----------QNVDIVVIRENTEGEYS------GLE- 150 (359)
Q Consensus 99 ----~~~s~~~~LR~~ldlyanvRP~~~--~p----g~~~~~-----------~~iDivivREnteG~Y~------g~~- 150 (359)
+++|+|+.||+.||||+|+||++. +| |+++|+ .++|++||||||||+|+ |.+
T Consensus 102 ~l~~~~~s~~~~lR~~ldlyan~RP~~~~~~~~l~~g~~~pl~i~R~~~g~~y~~~D~vivREnteg~Y~~~e~teG~~~ 181 (427)
T 2qfy_A 102 NLHKMWKSPNGTIRNILGGTVFREPIVIPRIPRLVPRWEKPIIIGRHAHGDQYKATDTLIPGPGSLELVYKPSDPTTAQP 181 (427)
T ss_dssp TCSSCCCCHHHHHHHHHCSEEEEEECCCTTSCCSSTTCCEEEEEEEECSSGGGGCEEEEECSSEEEEEEEEESCTTTSCC
T ss_pred hhcccccchHHHHHHhcCCEEEecccccccchhhccCCCCCeeEeecccCCccCCeeEEEeccCccceeeeccccCCccc
Confidence 478999999999999999999875 64 445553 57999999999999999 422
Q ss_pred --eee----eCCEEEEEEeecHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHH-hhCCc------
Q 018224 151 --HEV----VPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVA-TKYPS------ 217 (359)
Q Consensus 151 --~~~----~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva-~eypd------ 217 (359)
+.. .+++++. .++|+++++||+|+||+||++| +++||+|||+|||+.|||||+++|+||+ ++|||
T Consensus 182 ~~~~~~~~~~~~v~~~-~~~T~~~ieRIar~AFe~A~~r-~~kVt~v~KaNVlk~s~glfr~v~~eva~~eYpd~~~~~~ 259 (427)
T 2qfy_A 182 QTLKVYDYKGSGVAMA-MYNTDESIEGFAHSSFKLAIDK-KLNLFLSTKNTILKKYDGRFKDIFQEVYEAQYKSKFEQLG 259 (427)
T ss_dssp EEEEEEEESSCEEEEE-EEEEHHHHHHHHHHHHHHHHHH-TCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHHHHHT
T ss_pred cccccccCCCceEEEE-EEEcHHHHHHHHHHHHHHHHHh-CCceEEEECCccchhhhHHHHHHHHHHHHHhCCCcccCCe
Confidence 111 1345544 5899999999999999999998 5789999999999999999999999998 79999
Q ss_pred eeeceeeHhHHHHHHHhCCCCccEEEeCCcchhhHHHhhhhhcCCCCccceeeeCCCc--ceEeccccCCCCCcc-----
Q 018224 218 IKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGGNVGADT--AVFEQGASAGNVGNE----- 290 (359)
Q Consensus 218 I~~~~~~vD~~~~~Lv~~P~~fdViv~~NlfGDILSDlaa~l~GglGl~psanig~~~--a~FEp~~~~~HGsAp----- 290 (359)
|+++|++||+|+||||++|++| ||||+|||||||||++|+++||+||+||+|+|++. ++|||+ |||||
T Consensus 260 I~~e~~~VD~~amqlV~~P~~F-Vivt~NlfGDILSD~aA~l~GslGl~pSanig~~~~~~~fEpv----HGSAPdi~~~ 334 (427)
T 2qfy_A 260 IHYEHRLIDDMVAQMIKSKGGF-IMALKNYDGDVQSDIVAQGFGSLGLMTSILVTPDGKTFESEAA----HGTVTRHYRK 334 (427)
T ss_dssp CCEEEEEHHHHHHHHHHSCEEE-EEEECHHHHHHHHHHHHHHHTCTTSEEEEEECTTSCCEEEECC----SCCCHHHHHH
T ss_pred EEEEEEEHHHHHHHHHhCCCce-EEEECccchHHHHHHHHHhcCcccccceeEeCCCCceeEecCC----CCCcccccch
Confidence 9999999999999999999999 99999999999999999999999999999999876 899999 99999
Q ss_pred ccccccc-CChhHHHHHHHHHHhhcCCH-------HHHHHHHHHHHHHHH-cCcccCCCCCC---------CCcHHHHHH
Q 018224 291 KVVEQKK-ANPVALLLSSAMMLRHLQFP-------SFADRLETAVKRVIS-EEKYRTKDLGG---------GCTTQQIVD 352 (359)
Q Consensus 291 diaGk~~-ANP~a~Ils~ammL~~lg~~-------~~A~~i~~Av~~~l~-~g~~~T~Dlgg---------~~~T~e~~~ 352 (359)
||||||+ |||+|+|||++|||+|||+. ++|++|++||.++++ +| ++|+|||| .+||+||+|
T Consensus 335 diAGk~~~ANP~A~IlS~ammL~~lg~~~~~~~l~~~A~~Ie~Av~~~l~~~G-~~T~Dlgg~~g~~~~~~~~~T~e~~d 413 (427)
T 2qfy_A 335 YQKGEETSTNSIASIFAWSRGLLKRGELDNTPALCKFANILESATLNTVQQDG-IMTKDLALACGNNERSAYVTTEEFLD 413 (427)
T ss_dssp HHTTCCCCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTC-CCCHHHHHHTTCCSGGGCCCHHHHHH
T ss_pred hhcCCCCccCcHHHHHHHHHHHHHhCcccCcchhHHHHHHHHHHHHHHHHhCC-CccccccccCCccccCCCCCHHHHHH
Confidence 7899995 99999999999999999976 899999999999999 99 79999975 479999999
Q ss_pred HHHHhc
Q 018224 353 AVIANL 358 (359)
Q Consensus 353 av~~~l 358 (359)
+|+++|
T Consensus 414 aV~~~l 419 (427)
T 2qfy_A 414 AVEKRL 419 (427)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999987
No 29
>3lxy_A 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD-DEPE dehydrogenase, metal-binding, NAD, NADP, oxidoreductase, PY biosynthesis; HET: SUC; 1.70A {Yersinia pestis} SCOP: c.77.1.3 PDB: 1ps6_A* 1ptm_A 1ps7_A 1r8k_A
Probab=96.78 E-value=0.0051 Score=59.91 Aligned_cols=136 Identities=8% Similarity=0.034 Sum_probs=85.4
Q ss_pred EeecHHHHHHHHHHHHHHHHh-cC--CCcEEEEEcCCchhhc--hHHH--------HHHHHHHHhhCCceeec-eeeHhH
Q 018224 162 KVITKFCSERIAKYAFEYAYL-NY--RKKVTAVHKANIMKLA--DGLF--------LESCREVATKYPSIKYN-EIIVDN 227 (359)
Q Consensus 162 ~~~Tr~~~eRiar~AFe~A~~-r~--~~~Vt~v~KaNvl~~t--dglf--------~~~~~eva~eypdI~~~-~~~vD~ 227 (359)
..+|.+.+.+.++.+.+--++ -| +-|+-+.- -| +|+ .|+| +-..++..++ +++++ .+--|+
T Consensus 178 ~~it~e~i~~~i~~~~~~l~~~fGi~~PrIAV~g-LN--PHAGE~G~~G~EE~~iI~PAi~~lr~~--Gi~~~GP~paDt 252 (334)
T 3lxy_A 178 GAITQASLHEVITILDNDLKTKFGITQPQIYVCG-LN--PHAGEGGHMGHEEIDTIIPALNTLRQQ--GINLIGPLPADT 252 (334)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHTSCCSSCCEEEEC-SS--GGGGGGGTTCSHHHHTHHHHHHHHHHT--TCCEEEEECHHH
T ss_pred hhCCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEe-cC--CCCCCCCCCCchhHHHHHHHHHHHHHC--CCceeCCCChHH
Confidence 367899999999988876665 23 23565552 11 121 2343 2344444444 56543 455788
Q ss_pred HHHHHHhCCCCccEEEeCCcchhhHHHhhhhhcCCCCccceeeeCCCcceEeccccCCCCCcccccccccCChhHHHHHH
Q 018224 228 CCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGGNVGADTAVFEQGASAGNVGNEKVVEQKKANPVALLLSS 307 (359)
Q Consensus 228 ~~~~Lv~~P~~fdViv~~NlfGDILSDlaa~l~GglGl~psanig~~~a~FEp~~~~~HGsApdiaGk~~ANP~a~Ils~ 307 (359)
+..+-.+ ++||++||.+. |.+---.--+++--+.|+.-.-.+--+... ||||.||||||+|||.+++.|.
T Consensus 253 ~F~~~~~--~~~D~vlaMYH------DQGlip~K~l~F~~gVNvTlGLP~iRTS~D--HGTAfDIAGkG~A~~~S~~~Ai 322 (334)
T 3lxy_A 253 LFQPKYL--QHADAVLAMYH------DQGLPVLKYQGFGRAVNITLGLPFIRTSVD--HGTALELAATGTADVGSFITAL 322 (334)
T ss_dssp HTSHHHH--TTCSEEEESSH------HHHHHHHHHHHTTCCEEEEESSSSCEEEES--SCCCGGGTTTTCSCCHHHHHHH
T ss_pred hcChhhh--ccCCEEEEccc------chhhHhHHhcccCccEEEecCCCeeeecCC--CCcchhhccCCCCChHHHHHHH
Confidence 8766555 79999999765 333333444555567777643223222233 9999999999999999998887
Q ss_pred HHHHh
Q 018224 308 AMMLR 312 (359)
Q Consensus 308 ammL~ 312 (359)
-+-.+
T Consensus 323 ~~A~~ 327 (334)
T 3lxy_A 323 NLAIK 327 (334)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65443
No 30
>1itw_A Isocitrate dehydrogenase; greece KEY motif, oxidoreductase; HET: ICT; 1.95A {Azotobacter vinelandii} SCOP: c.77.1.2 PDB: 1j1w_A*
Probab=96.65 E-value=0.06 Score=55.50 Aligned_cols=188 Identities=18% Similarity=0.198 Sum_probs=128.3
Q ss_pred ceeeeCCEEEEEEeecHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHhhCC--ceeeceee-Hh
Q 018224 150 EHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYP--SIKYNEII-VD 226 (359)
Q Consensus 150 ~~~~~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~eyp--dI~~~~~~-vD 226 (359)
+|.+..|-.+..+-.-...++..++.|..+||..|-.-|.-.|+.-. -|.-..+-+++.-++|- +.+++-|- ++
T Consensus 447 eh~Ve~GDIwRmcq~KDapI~DWVkLAV~Rar~sg~pavFWLD~~Ra---HDa~lI~kV~~yL~~hdt~GLdi~Im~p~~ 523 (741)
T 1itw_A 447 EQSVEAGDIWRMCQAKDAPIQDWVKLAVNRARATNTPAVFWLDPARA---HDAQVIAKVERYLKDYDTSGLDIRILSPVE 523 (741)
T ss_dssp EEEECTTCEEEEEEECHHHHHHHHHHHHHHHHHHTCCEEEECCTTSH---HHHHHHHHHHHHHTTSCCTTCCEEEECHHH
T ss_pred EccccCCcchhhhhccCchHHHHHHHHHHHHHhcCCCeEEeeCCCCc---cHHHHHHHHHHHHHhcCCCCCceEeeCHHH
Confidence 45556666666677778889999999999999987655666665432 25444555555556653 44455553 67
Q ss_pred HHHHHHHhCCCCcc-EEEeCCcchhhHHHhhhhh-cC-CCCccceeeeCCCcceEeccccCCCCCcccccc------ccc
Q 018224 227 NCCMQLVSKPEQFD-VMVTPNLYGNLVSNTAAGI-AG-GTGVMPGGNVGADTAVFEQGASAGNVGNEKVVE------QKK 297 (359)
Q Consensus 227 ~~~~~Lv~~P~~fd-Viv~~NlfGDILSDlaa~l-~G-glGl~psanig~~~a~FEp~~~~~HGsApdiaG------k~~ 297 (359)
++-..|-+=-.+-| +-||.|..=|+|+||.--| .| |-=|..-.=+=...+|||+. . .||||...- -=.
T Consensus 524 A~~~sleRir~G~dTISVTGNVLRDYLTDLFPIlELGTSAKMLSIVPLm~GGGLfETG-A--GGSAPKHVqQ~~eEnhLR 600 (741)
T 1itw_A 524 ATRFSLARIREGKDTISVTGNVLRDYLTDLFPIMELGTSAKMLSIVPLMSGGGLFETG-A--GGSAPKHVQQFLEEGYLR 600 (741)
T ss_dssp HHHHHHHHHHTTCCCEEEECHHHHHHHHHHHHHHHHSCSSSSEEEEEBTTSCEEEESC-S--SCCCHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHcCCCeEEeechhhhhhccccchhhhhccchhHhhhcccccCCccccCC-C--CcCchHHHHHHHHcCccc
Confidence 77666644334445 7799999999999998744 23 32222222222345899996 4 899999763 234
Q ss_pred CChhHHHHHHHHHHhhcCCH-------HHHHHHHHHHHHHHHcCcccCCCCCC
Q 018224 298 ANPVALLLSSAMMLRHLQFP-------SFADRLETAVKRVISEEKYRTKDLGG 343 (359)
Q Consensus 298 ANP~a~Ils~ammL~~lg~~-------~~A~~i~~Av~~~l~~g~~~T~Dlgg 343 (359)
=+-+|-+|+.+--|+||+.. --|+.|.+|..+.|++++--..-.|.
T Consensus 601 WDSLGEFlALa~Sle~l~~~~~N~kA~vLa~tLD~At~~~L~n~KSPsRkvGe 653 (741)
T 1itw_A 601 WDSLGEFLALAASLEHLGNAYKNPKALVLASTLDQATGKILDNNKSPARKVGE 653 (741)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTCSCCSSSSS
T ss_pred hhhHHHHHHHHHhHHHHHhhcCChHHHHHHHHHHHHHHHHHhCCCCCCcccCC
Confidence 56789999999999998752 33889999999999988643444443
No 31
>2b0t_A NADP isocitrate dehydrogenase; monomeric, IDH, oxidoreductase; 1.75A {Corynebacterium glutamicum} PDB: 3mbc_A*
Probab=96.65 E-value=0.061 Score=55.45 Aligned_cols=188 Identities=17% Similarity=0.165 Sum_probs=128.4
Q ss_pred ceeeeCCEEEEEEeecHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHhhCC--ceeeceee-Hh
Q 018224 150 EHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYP--SIKYNEII-VD 226 (359)
Q Consensus 150 ~~~~~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~eyp--dI~~~~~~-vD 226 (359)
+|.+..|-.+..+-.-...++..++.|..+||..|-.-|.-.|+.-. -|.-..+-+++.-++|- +.+++-|- ++
T Consensus 443 eh~Ve~GDIwRmcq~KDapI~DWVkLAV~Rar~sg~pavFWLD~~Ra---HDa~lI~kV~~yL~~hdt~GLdi~Im~p~~ 519 (738)
T 2b0t_A 443 EHDVEANDIWRACQVKDAPIQDWVKLAVTRSRLSGMPAVFWLDPERA---HDRNLASLVEKYLADHDTEGLDIQILSPVE 519 (738)
T ss_dssp EEEECTTCEEEEEEECHHHHHHHHHHHHHHHHHHCCCEEEECCTTCH---HHHHHHHHHHHHHTTSCCTTCCEEEECHHH
T ss_pred eccccCCcchhhhhccCchHHHHHHHHHHHHHhcCCCeEEeeCCCCc---cHHHHHHHHHHHHHhcCCCCCceEeeCHHH
Confidence 45566666666677778889999999999999987655666665432 25444555555556653 44455553 67
Q ss_pred HHHHHHHhCCCCcc-EEEeCCcchhhHHHhhhhh-cC-CCCccceeeeCCCcceEeccccCCCCCcccccc------ccc
Q 018224 227 NCCMQLVSKPEQFD-VMVTPNLYGNLVSNTAAGI-AG-GTGVMPGGNVGADTAVFEQGASAGNVGNEKVVE------QKK 297 (359)
Q Consensus 227 ~~~~~Lv~~P~~fd-Viv~~NlfGDILSDlaa~l-~G-glGl~psanig~~~a~FEp~~~~~HGsApdiaG------k~~ 297 (359)
++-..|-+=-.+-| +-||.|..=|+|+||.--| .| |-=|..-.=+=...+|||+. . .||||...- -=.
T Consensus 520 A~~~slerir~G~dTISVTGNVLRDYLTDLFPIlELGTSAKMLSIVPLm~GGGLfETG-A--GGSAPKHVqQ~~eEnhLR 596 (738)
T 2b0t_A 520 ATQLSIDRIRRGEDTISVTGNVLRDYNTDLFPILELGTSAKMLSVVPLMAGGGLFETG-A--GGSAPKHVQQVQEENHLR 596 (738)
T ss_dssp HHHHHHHHHHTTCCCEEEECHHHHHHHHHHHHHHHHSCSSSCEEEEEBTTSCEEEECC-S--SCCCHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHcCCCeEEeechhhhhhccccchhhhhccchhHhhhcccccCCccccCC-C--CcCchHHHHHHHHcCccc
Confidence 77666644334445 7799999999999998744 23 32222222222345899996 4 899999763 234
Q ss_pred CChhHHHHHHHHHHhhcCCH-------HHHHHHHHHHHHHHHcCcccCCCCCC
Q 018224 298 ANPVALLLSSAMMLRHLQFP-------SFADRLETAVKRVISEEKYRTKDLGG 343 (359)
Q Consensus 298 ANP~a~Ils~ammL~~lg~~-------~~A~~i~~Av~~~l~~g~~~T~Dlgg 343 (359)
=+-+|-+|+.+--|+||+.. --|+.|.+|..+.|++++--..-.|.
T Consensus 597 WDSLGEFlALa~Sle~l~~~~~N~kA~vLa~tLD~At~~~L~n~KSPsRkvGe 649 (738)
T 2b0t_A 597 WDSLGEFLALAESFRHELNNNGNTKAGVLADALDKATEKLLNEEKSPSRKVGE 649 (738)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTTCSCCSSTTS
T ss_pred hhhHHHHHHHHHhHHHHHhhcCChHHHHHHHHHHHHHHHHHhCCCCCCcccCC
Confidence 56789999999999998752 33889999999999988643444443
No 32
>2hi1_A 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridoxal phosphate biosynthesis, structural GENO PSI-2, protein structure initiative; 2.30A {Salmonella typhimurium}
Probab=95.94 E-value=0.0084 Score=58.26 Aligned_cols=134 Identities=17% Similarity=0.195 Sum_probs=86.8
Q ss_pred eecHHHHHHHHHHHHHHHHhcC--CCcEEEEEcCCchhhc--hHHH-HH-------HHHHHHhhCCceee-ceeeHhHHH
Q 018224 163 VITKFCSERIAKYAFEYAYLNY--RKKVTAVHKANIMKLA--DGLF-LE-------SCREVATKYPSIKY-NEIIVDNCC 229 (359)
Q Consensus 163 ~~Tr~~~eRiar~AFe~A~~r~--~~~Vt~v~KaNvl~~t--dglf-~~-------~~~eva~eypdI~~-~~~~vD~~~ 229 (359)
.+|++.+.+.++...++-++-| +-|+-+. =-| +|. .|+| +| ..++..++ ++.+ -..--|++.
T Consensus 181 ~it~e~i~~~i~~~~~L~~~fgi~~PrIaV~-GLN--PHAGE~G~~G~EE~~iI~PAi~~~r~~--Gi~~~GP~paDT~F 255 (330)
T 2hi1_A 181 TLSTARVETVIGIADTFLKRVGYVKPRIAVA-GVN--PHAGENGLFGDEETRILTPAITDARAK--GMDVYGPCPPDTVF 255 (330)
T ss_dssp HCCHHHHHHHHHHHHHHHHHTTCSSCEEEEE-CSS--GGGSSTTSCCHHHHHTHHHHHHHHHTT--TCEEEEEECHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHcCCCCCCEEEE-ecC--CCCCCCCCCCHhHHHHHHHHHHHHHHC--CCceeCCCCchhhc
Confidence 5899999999999988333233 2344332 233 222 3444 22 23333333 5655 355578887
Q ss_pred HHHHhCCCCccEEEeCCcchhhHHHhhhhhcCCCCccceeeeCCCcceEeccccCCCCCcccccccccCChhHHHHHHHH
Q 018224 230 MQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGGNVGADTAVFEQGASAGNVGNEKVVEQKKANPVALLLSSAM 309 (359)
Q Consensus 230 ~~Lv~~P~~fdViv~~NlfGDILSDlaa~l~GglGl~psanig~~~a~FEp~~~~~HGsApdiaGk~~ANP~a~Ils~am 309 (359)
.+-.+ ++||++|| || -|.+---.--+|+--+.|+.-.-.+--+... ||||.||||||+|||.+++.|.-+
T Consensus 256 ~~~~~--~~~D~vla--MY----HDQGlip~K~l~F~~gVNvTlGLP~iRTSvD--HGTAfDIAGkG~A~~~Sl~~Ai~~ 325 (330)
T 2hi1_A 256 LQAYE--GQYDMVVA--MY----HDQGHIPLKLLGFYDGVNITAGLPFIRTSAD--HGTAFDIAWTGKAKSESMAVSIKL 325 (330)
T ss_dssp HHHHT--TSCSEEEE--SS----HHHHHHHHHHCC-CCSEEEEETSSSEEEEES--CCCCTTTTTTTCCCCHHHHHHHHH
T ss_pred ccccc--ccCCEEEE--cc----cccccHhHhhcccCcceEEecCCCEEEecCC--CCccccccCCCCCChHHHHHHHHH
Confidence 76554 69999997 44 3676666778888888888754333333334 999999999999999999988765
Q ss_pred HH
Q 018224 310 ML 311 (359)
Q Consensus 310 mL 311 (359)
..
T Consensus 326 A~ 327 (330)
T 2hi1_A 326 AM 327 (330)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 33
>1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine biosynthesis,oxidoreductase, structural GE PSI; 2.01A {Pseudomonas aeruginosa}
Probab=95.44 E-value=0.0072 Score=58.69 Aligned_cols=135 Identities=10% Similarity=0.075 Sum_probs=85.9
Q ss_pred eecHHHHHHHHHHHHHHHHh-cC--CCcEEEEEcCCchhhc--hHHH--------HHHHHHHHhhCCceee-ceeeHhHH
Q 018224 163 VITKFCSERIAKYAFEYAYL-NY--RKKVTAVHKANIMKLA--DGLF--------LESCREVATKYPSIKY-NEIIVDNC 228 (359)
Q Consensus 163 ~~Tr~~~eRiar~AFe~A~~-r~--~~~Vt~v~KaNvl~~t--dglf--------~~~~~eva~eypdI~~-~~~~vD~~ 228 (359)
.+|++.+.+.++...+--++ -| +-|+-+ -=-| +|. .|+| .-..++..++ ++.+ -..--|++
T Consensus 174 ~it~e~i~~~i~~~~~~L~~~fgi~~PrIaV-~GLN--PHAGE~G~~G~EE~~iI~Pai~~~r~~--Gi~~~GP~paDT~ 248 (328)
T 1yxo_A 174 AISDERLTRVARILHADLRDKFGIAHPRILV-CGLN--PHAGEGGHLGREEIEVIEPCLERLRGE--GLDLIGPLPADTL 248 (328)
T ss_dssp HCCHHHHHHHHHHHHHHHHHTTCCSSCEEEE-ECSS--GGGGTTTTTCSHHHHTHHHHHHHHHTT--TCEEEEEECHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHHcCCCCCCEEE-EecC--CCCCCCCCCCHhHHHHHHHHHHHHHHC--CCceeCCCCchhh
Confidence 58899999988888875444 23 233433 2233 222 3444 1133333333 5655 34556888
Q ss_pred HHHHHhCCCCccEEEeCCcchhhHHHhhhhhcCCCCccceeeeCCCcceEeccccCCCCCcccccccccCChhHHHHHHH
Q 018224 229 CMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGGNVGADTAVFEQGASAGNVGNEKVVEQKKANPVALLLSSA 308 (359)
Q Consensus 229 ~~~Lv~~P~~fdViv~~NlfGDILSDlaa~l~GglGl~psanig~~~a~FEp~~~~~HGsApdiaGk~~ANP~a~Ils~a 308 (359)
..+-.+ ++||++|| ||= |.+---.--+|+--+.|+.-.-.+--+... ||||.||||||+|||.+++.|.-
T Consensus 249 F~~~~~--~~~D~vla--MYH----DQGlip~K~l~F~~gVNvTlGLP~iRTSvD--HGTAfDIAGkG~A~~~Sl~~Ai~ 318 (328)
T 1yxo_A 249 FTPKHL--EHCDAVLA--MYH----DQGLPVLKYKGFGAAVNVTLGLPIIRTSVD--HGTALDLAGSGRIDSGSLQVALE 318 (328)
T ss_dssp TSHHHH--TTCSEEEE--SSH----HHHHHHHHHHHTTSCEEEEESSSSCEEEEC--SCCCGGGTTTCCCCCHHHHHHHH
T ss_pred cccccc--cCCCEEEE--ccc----ccccHhHhhcccCcceEEecCCCEEEecCC--CCccccccCCCCCChHHHHHHHH
Confidence 766555 69999997 443 566666667777788888644333333233 99999999999999999998876
Q ss_pred HHHh
Q 018224 309 MMLR 312 (359)
Q Consensus 309 mmL~ 312 (359)
+..+
T Consensus 319 ~A~~ 322 (328)
T 1yxo_A 319 TAYQ 322 (328)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6443
No 34
>4aty_A Terephthalate 1,2-CIS-dihydrodiol dehydrogenase; oxidoreductase; 1.85A {Burkholderia xenovorans LB400}
Probab=95.42 E-value=0.0097 Score=58.15 Aligned_cols=135 Identities=16% Similarity=0.090 Sum_probs=78.4
Q ss_pred EeecHHHHHHHHHHHHHHHHhcCCC--cEEEEEcCCchhhchHHH-HH-------HHHHHHhhCCceeec-eeeHhHHHH
Q 018224 162 KVITKFCSERIAKYAFEYAYLNYRK--KVTAVHKANIMKLADGLF-LE-------SCREVATKYPSIKYN-EIIVDNCCM 230 (359)
Q Consensus 162 ~~~Tr~~~eRiar~AFe~A~~r~~~--~Vt~v~KaNvl~~tdglf-~~-------~~~eva~eypdI~~~-~~~vD~~~~ 230 (359)
+.+|++.+.+.++...+.-++.|.+ |+-+. =-|==.--+|+| +| +.++..++ ++.+. ..--|++.
T Consensus 195 ~~It~~~I~~~i~~~~~~l~~fgi~~PrIaV~-GLNPHaGE~G~~G~EE~~iI~Pai~~l~~~--gi~v~GP~paDt~F- 270 (349)
T 4aty_A 195 ARLDQRHVERAARAAVQALQLMGIAHPVVGLM-GINPHAGEGGLFGRDDIDITEPVARKLRDD--GMTVIGPQGADLLL- 270 (349)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHTC-CCCCEEEE-CSSGGGGTTTTTCSHHHHTHHHHHHHHHHC---CCEEEEECHHHHT-
T ss_pred hhhhhHHHHHHHHHHHHHHHHhcCCCCceEEE-ecCCCCCccccccchHHHHHHHHHHHHHHC--CCeEeCCCchhhhh-
Confidence 4678888888887776655554422 33332 122111113444 12 23333333 34333 44467765
Q ss_pred HHHhCCCCccEEEeCCcchhhHHHhhhhhcCCCCccceeeeCCCcceEeccccCCCCCcccccccccCChhHHHHHHHHH
Q 018224 231 QLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGGNVGADTAVFEQGASAGNVGNEKVVEQKKANPVALLLSSAMM 310 (359)
Q Consensus 231 ~Lv~~P~~fdViv~~NlfGDILSDlaa~l~GglGl~psanig~~~a~FEp~~~~~HGsApdiaGk~~ANP~a~Ils~amm 310 (359)
.+.+||++|+ ||=| .+---+-.+++--+.|+.-.-.+--+... ||+|-||||||+|||.+++.|.-+.
T Consensus 271 ----~~~~~D~vla--MYHD----Qgl~p~K~l~f~~~vnitlGLp~iRtS~d--HGta~diagkg~a~~~s~~~Ai~~a 338 (349)
T 4aty_A 271 ----TNPDIDVFVA--MYHD----QGHIPVKLRAGRHSAALSIGAGVLFSSVG--HGSGFDIAGTLLADPAPLLGAIRLV 338 (349)
T ss_dssp ----TCTTCSEEEE--SSHH----HHHHHHHHHHTTSEEEEEESSSSEEEECC--SCCCTTSTTTTCCCCHHHHHHHHHH
T ss_pred ----ccCCCCEEEE--cccc----cchHHHHhcccCCcEEEecCCCeeEeCCC--CChhhhhccCCCCChHHHHHHHHHH
Confidence 2468999988 5544 44444445566667777643233233333 9999999999999999999887765
Q ss_pred Hh
Q 018224 311 LR 312 (359)
Q Consensus 311 L~ 312 (359)
..
T Consensus 339 ~~ 340 (349)
T 4aty_A 339 TT 340 (349)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 35
>3tsn_A 4-hydroxythreonine-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: UNL; 2.63A {Campylobacter jejuni subsp}
Probab=94.17 E-value=0.025 Score=55.63 Aligned_cols=80 Identities=10% Similarity=0.095 Sum_probs=54.9
Q ss_pred eeHhHHHHHHHhCCCCccEEEeCCcchhhHHHhhhhhcCCCCccceeeeCCCcceEeccccCCCCCcccccccc-cCChh
Q 018224 223 IIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGGNVGADTAVFEQGASAGNVGNEKVVEQK-KANPV 301 (359)
Q Consensus 223 ~~vD~~~~~Lv~~P~~fdViv~~NlfGDILSDlaa~l~GglGl~psanig~~~a~FEp~~~~~HGsApdiaGk~-~ANP~ 301 (359)
.--|++-.+-.+ ++||.+|| || -|.+---.--+|+--+.|+.-.-.+--+... ||||.|||||| +|||.
T Consensus 282 ~paDT~F~~~~~--~~~D~vlA--MY----HDQGliplK~l~F~~gVNvTlGLP~IRTSvD--HGTAfDIAGkG~~Ad~~ 351 (367)
T 3tsn_A 282 LVADTAFTKTGL--KNCNRLVA--MY----HDLALAPLKALYFDKSINVSLNLPIIRVSVD--HGTAFDKAYKNAKINTK 351 (367)
T ss_dssp BCHHHHTSHHHH--HHCCEEEE--SS----HHHHHHHHHHHCTTTCEEEEESSSSCEEECC--CCSCTTSCSSCCCCCCH
T ss_pred cCchhhhccchh--cCCCEEEE--cc----ccCcchhhhhcccCccEEEecCCCeeeecCC--CCcchhhcCCCCcCChH
Confidence 345766554433 68999998 44 4455555566677778888644333333333 99999999999 99999
Q ss_pred HHHHHHHHHHh
Q 018224 302 ALLLSSAMMLR 312 (359)
Q Consensus 302 a~Ils~ammL~ 312 (359)
+++.|.-+-.+
T Consensus 352 Sl~~Ai~~A~~ 362 (367)
T 3tsn_A 352 SYFEAAKFAIN 362 (367)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988766543
No 36
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=82.21 E-value=29 Score=31.48 Aligned_cols=156 Identities=16% Similarity=0.193 Sum_probs=77.6
Q ss_pred CCCeeEEEEEecCcccCCcHHHHHHHHhcCceeeccccCCCCCC--cccchHHHHhhcCcEEEEEEeecCCCCCCCcccc
Q 018224 56 HAPIYFEKYEVHGDMKRVPQQVLDSIRKNKVCLKGGLKTPVGGG--VSSLNVQLRKELDLYAALVNCFNLPGLPTRHQNV 133 (359)
Q Consensus 56 ~~~ie~~~~~~g~~~~~lp~et~~~~~~~da~l~G~~~~p~~~~--~~s~~~~LR~~ldlyanvRP~~~~pg~~~~~~~i 133 (359)
++++++... .| . ..++.++..+++|.+++|.-+...... ..|....+=+. -+.
T Consensus 100 ~~~~~~~~~-~g-~---~~~~I~~~a~~~DliV~G~~g~~~~~~~~~Gs~~~~vl~~--------------------~~~ 154 (309)
T 3cis_A 100 PPTVHSEIV-PA-A---AVPTLVDMSKDAVLMVVGCLGSGRWPGRLLGSVSSGLLRH--------------------AHC 154 (309)
T ss_dssp CSCEEEEEE-SS-C---HHHHHHHHGGGEEEEEEESSCTTCCTTCCSCHHHHHHHHH--------------------CSS
T ss_pred CceEEEEEe-cC-C---HHHHHHHHhcCCCEEEECCCCCccccccccCcHHHHHHHh--------------------CCC
Confidence 666666432 33 2 234455566789999999865321111 01111111111 135
Q ss_pred cEEEEecCCcceEeccceeeeCCEEEEEEeecHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCchhh--------------
Q 018224 134 DIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKL-------------- 199 (359)
Q Consensus 134 DivivREnteG~Y~g~~~~~~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvl~~-------------- 199 (359)
+++|++...... .......+...+. -...+++.+++|+++|+..+ .+|+++|=..-...
T Consensus 155 PVlvv~~~~~~~----~~~~~~~Ilv~~D--~s~~s~~al~~a~~la~~~~-a~l~ll~v~~~~~~~~~~~~~~~~~~~~ 227 (309)
T 3cis_A 155 PVVIIHDEDSVM----PHPQQAPVLVGVD--GSSASELATAIAFDEASRRN-VDLVALHAWSDVDVSEWPGIDWPATQSM 227 (309)
T ss_dssp CEEEECTTCCCS----CSSCCCCEEEECC--SSHHHHHHHHHHHHHHHHTT-CCEEEEEESCSSCCTTCSSCCHHHHHHH
T ss_pred CEEEEcCCcccC----CCCCCCeEEEEeC--CChHHHHHHHHHHHHHHhcC-CEEEEEEEeecccccCCCcccHHHHHHH
Confidence 677887654310 0001122333332 23457899999999998864 67888873321110
Q ss_pred chHHHHHHHHHHHhhCCceeeceeeH----hHHHHHHHhCCCCccEEEeCC
Q 018224 200 ADGLFLESCREVATKYPSIKYNEIIV----DNCCMQLVSKPEQFDVMVTPN 246 (359)
Q Consensus 200 tdglf~~~~~eva~eypdI~~~~~~v----D~~~~~Lv~~P~~fdViv~~N 246 (359)
......+..++..+.|+++.++.... .....+.++ +.|.||+..
T Consensus 228 ~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~---~adliV~G~ 275 (309)
T 3cis_A 228 AEQVLAERLAGWQERYPNVAITRVVVRDQPARQLVQRSE---EAQLVVVGS 275 (309)
T ss_dssp HHHHHHHHHTTHHHHCTTSCEEEEEESSCHHHHHHHHHT---TCSEEEEES
T ss_pred HHHHHHHHHHHHHhhCCCCcEEEEEEcCCHHHHHHHhhC---CCCEEEECC
Confidence 01112223333334567776665442 233344444 678776543
No 37
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=74.08 E-value=9.8 Score=33.77 Aligned_cols=177 Identities=8% Similarity=0.028 Sum_probs=88.5
Q ss_pred CCCcceEEEEcCCC---CcHHHHHHHHHHHHHcCCCeeEEEEEecCcccCCcHHHHHHH--HhcCceeeccccCCCCCCc
Q 018224 26 DGSPRAVTLIPGDG---IGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSI--RKNKVCLKGGLKTPVGGGV 100 (359)
Q Consensus 26 ~~~~~~I~vi~GDG---IGpEV~~~a~~vl~~~~~~ie~~~~~~g~~~~~lp~et~~~~--~~~da~l~G~~~~p~~~~~ 100 (359)
++++++|+++--+- --.++...+.+.++..|..+.+. ...... .-..+.++.+ ++.|+++..|....
T Consensus 2 s~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~~~-~~~~~~~~~l~~~~vdgiIi~~~~~~----- 73 (291)
T 3l49_A 2 SLEGKTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIAL--DAGRND-QTQVSQIQTLIAQKPDAIIEQLGNLD----- 73 (291)
T ss_dssp CCTTCEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEE--ECTTCH-HHHHHHHHHHHHHCCSEEEEESSCHH-----
T ss_pred CCCCcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEE--cCCCCH-HHHHHHHHHHHHcCCCEEEEeCCChh-----
Confidence 34678999984432 33467777777777777665553 332210 0112233333 46788887765311
Q ss_pred ccchHHHHhhcCcEEEEEEeecCCCCCCCcccccEEEEecCCcceEeccceeeeCCEEEEEEeecHHHHHHHHHHHHHHH
Q 018224 101 SSLNVQLRKELDLYAALVNCFNLPGLPTRHQNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYA 180 (359)
Q Consensus 101 ~s~~~~LR~~ldlyanvRP~~~~pg~~~~~~~iDivivREnteG~Y~g~~~~~~~~va~~~~~~Tr~~~eRiar~AFe~A 180 (359)
.....+++..+ .++.+|++-...++ . ...+..-...+.+. |.++.
T Consensus 74 -~~~~~~~~~~~------------------~~iPvV~~~~~~~~-----------~-~~~V~~D~~~~g~~----~~~~l 118 (291)
T 3l49_A 74 -VLNPWLQKIND------------------AGIPLFTVDTATPH-----------A-INNTTSNNYSIGAE----LALQM 118 (291)
T ss_dssp -HHHHHHHHHHH------------------TTCCEEEESCCCTT-----------C-SEEEEECHHHHHHH----HHHHH
T ss_pred -hhHHHHHHHHH------------------CCCcEEEecCCCCC-----------c-CceEecChHHHHHH----HHHHH
Confidence 00111222111 13345554222211 0 01222223444444 44444
Q ss_pred Hh--cCCCcEEEEEcCCchhhchHHHHHHHHHHHhhCCcee-eceeeH-------h---HHHHHHHh-CCC--CccEEEe
Q 018224 181 YL--NYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIK-YNEIIV-------D---NCCMQLVS-KPE--QFDVMVT 244 (359)
Q Consensus 181 ~~--r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~eypdI~-~~~~~v-------D---~~~~~Lv~-~P~--~fdViv~ 244 (359)
.+ +|++++.++.-..-.. +.....+-+.+..+++|+++ ++..++ + .++.++++ +|. ++|.|+|
T Consensus 119 ~~~~~g~~~i~~i~~~~~~~-~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai~~ 197 (291)
T 3l49_A 119 VADLGGKGNVLVFNGFYSVP-VCKIRYDQMKYVLEAFPDVKIIEPELRDVIPNTIQSAYSNVTDMLTKYPNEGDVGAIWA 197 (291)
T ss_dssp HHHHTTCEEEEEECSCTTSH-HHHHHHHHHHHHHHTCTTEEECSSCBCCCSSSHHHHHHHHHHHHHHHCCSTTSCCEEEE
T ss_pred HHHcCCCceEEEEeCCCCCc-hHHHHHHHHHHHHHHCCCCEEEeeeccCCCCCCHHHHHHHHHHHHHhCCCcCCcCEEEE
Confidence 44 5778888885332221 22344556777777888887 343321 1 34455554 453 8999999
Q ss_pred CC
Q 018224 245 PN 246 (359)
Q Consensus 245 ~N 246 (359)
.|
T Consensus 198 ~~ 199 (291)
T 3l49_A 198 CW 199 (291)
T ss_dssp SS
T ss_pred CC
Confidence 87
No 38
>2af4_C Phosphate acetyltransferase; PTA dimer with one COA ligand bound PER monomer, acyltransferase; HET: COA; 2.15A {Methanosarcina thermophila} SCOP: c.77.1.5 PDB: 1qzt_A* 2af3_C*
Probab=66.38 E-value=13 Score=35.55 Aligned_cols=97 Identities=20% Similarity=0.188 Sum_probs=64.1
Q ss_pred eecHHHHHHHHHHHHHHHHh-cC-CCcEEEEEc---CCchhhchHHHHHHHHHHHhhCCceeec-eeeHhHHHHHHHh--
Q 018224 163 VITKFCSERIAKYAFEYAYL-NY-RKKVTAVHK---ANIMKLADGLFLESCREVATKYPSIKYN-EIIVDNCCMQLVS-- 234 (359)
Q Consensus 163 ~~Tr~~~eRiar~AFe~A~~-r~-~~~Vt~v~K---aNvl~~tdglf~~~~~eva~eypdI~~~-~~~vD~~~~~Lv~-- 234 (359)
-.|.+...+|++.+-+++++ -| .-||-+..= .+.-......-++.++...+++|++.++ .+-.|++...=+.
T Consensus 177 ~pt~e~l~~ia~~~~~~~~~~~Gi~PrVAlLs~ge~g~~~~~~~~~v~~A~~ll~~~~~~~~v~Gpl~~D~a~~~~~~~~ 256 (333)
T 2af4_C 177 MPSVEDVANIAVISAKTFELLVQDVPKVAMLSYSTKGSAKSKLTEATIASTKLAQELAPDIAIDGELQVDAAIVPKVAAS 256 (333)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHCSCCEEEEECSCSTTSCCSHHHHHHHHHHHHHHHHCTTSEEEEEECHHHHHCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEeCccCCCCCCCCcHHHHHHHHHHhccCCCcEEEecCcHHHhcCHHHHHh
Confidence 44688889999999999988 44 345666542 2211011123455665555678988776 4457877666555
Q ss_pred ----CC--CCccEEEeCCcc-hhhHHHhhhhh
Q 018224 235 ----KP--EQFDVMVTPNLY-GNLVSNTAAGI 259 (359)
Q Consensus 235 ----~P--~~fdViv~~Nlf-GDILSDlaa~l 259 (359)
+| +++||+|++|+| |+|.-=+..-+
T Consensus 257 k~~~s~~~G~aDvlV~pd~d~GNI~~K~l~~~ 288 (333)
T 2af4_C 257 KAPGSPVAGKANVFIFPDLNCGNIAYKIAQRL 288 (333)
T ss_dssp HSTTCSSTTSCCEEECSSHHHHHHHHHHHHHT
T ss_pred cCCCCccCCcCCEEEECCchHHHHHHHHHHHc
Confidence 44 689999999997 78776665543
No 39
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=64.72 E-value=24 Score=27.92 Aligned_cols=70 Identities=13% Similarity=0.206 Sum_probs=48.9
Q ss_pred CcceEEEEcCCCCcHHHH-HHHHHHHHHcCCCeeEEEEEecCcccCCcHHHHHHHHhcCceeeccccCCCCCCcccchHH
Q 018224 28 SPRAVTLIPGDGIGPLVT-NAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIRKNKVCLKGGLKTPVGGGVSSLNVQ 106 (359)
Q Consensus 28 ~~~~I~vi~GDGIGpEV~-~~a~~vl~~~~~~ie~~~~~~g~~~~~lp~et~~~~~~~da~l~G~~~~p~~~~~~s~~~~ 106 (359)
+.++|.+.=|.|++-.++ ....++++..|++++.+.+.++. +.+ .+.++|++|.||... .....
T Consensus 2 ~mkkIll~Cg~G~sTS~l~~k~~~~~~~~gi~~~i~a~~~~~----~~~----~~~~~Dvil~~pqv~-------~~~~~ 66 (106)
T 1e2b_A 2 EKKHIYLFSSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETL----AGE----KGQNADVVLLGPQIA-------YMLPE 66 (106)
T ss_dssp CCEEEEEECSSSTTTHHHHHHHHHHHHHSCCSEEEEEECSSS----TTH----HHHHCSEEEECTTSG-------GGHHH
T ss_pred CCcEEEEECCCchhHHHHHHHHHHHHHHCCCCeEEEEecHHH----HHh----hccCCCEEEEccchh-------hhHHH
Confidence 346899999999998854 45556677779998887777763 343 357899999998522 23455
Q ss_pred HHhhcC
Q 018224 107 LRKELD 112 (359)
Q Consensus 107 LR~~ld 112 (359)
+++.++
T Consensus 67 ~~~~~~ 72 (106)
T 1e2b_A 67 IQRLLP 72 (106)
T ss_dssp HHHHSS
T ss_pred HHHHhc
Confidence 666664
No 40
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=63.95 E-value=16 Score=31.85 Aligned_cols=81 Identities=12% Similarity=0.069 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHhhCCceeeceee--------HhHHHHHHHhCCC
Q 018224 166 KFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEII--------VDNCCMQLVSKPE 237 (359)
Q Consensus 166 r~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~eypdI~~~~~~--------vD~~~~~Lv~~P~ 237 (359)
+.+.+..+++..+...++|++++-++.-..-.. +.....+-+++..+++|++++.... .-..+.++++...
T Consensus 108 ~~~g~~~~~~l~~~~~~~G~~~i~~i~~~~~~~-~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 186 (276)
T 3ksm_A 108 YAAGQLAARALLATLDLSKERNIALLRLRAGNA-STDQREQGFLDVLRKHDKIRIIAAPYAGDDRGAARSEMLRLLKETP 186 (276)
T ss_dssp HHHHHHHHHHHHHHSCTTSCEEEEECBCCTTCH-HHHHHHHHHHHHHTTCTTEEEEECCBCCSSHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHhcCcCCCceEEEEEcCCCch-hHHHHHHHHHHHHHhCCCcEEEEEecCCCcHHHHHHHHHHHHHhCC
Confidence 444444444443332111778888876332111 2344556677777888888765322 1234556665555
Q ss_pred CccEEEeCCc
Q 018224 238 QFDVMVTPNL 247 (359)
Q Consensus 238 ~fdViv~~Nl 247 (359)
++|.|+|.|=
T Consensus 187 ~~~ai~~~~d 196 (276)
T 3ksm_A 187 TIDGLFTPNE 196 (276)
T ss_dssp CCCEEECCSH
T ss_pred CceEEEECCc
Confidence 7899999873
No 41
>1vi1_A Fatty acid/phospholipid synthesis protein PLSX; structural genomics, unknown function; HET: MSE; 2.95A {Bacillus subtilis} SCOP: c.77.1.4
Probab=62.43 E-value=45 Score=31.92 Aligned_cols=152 Identities=13% Similarity=0.089 Sum_probs=81.1
Q ss_pred eecHHHHHHHHHHHHHHHHh-cCC--CcEEEEEcC-CchhhchHHHHHHHHHHHhhCCceeece-eeHhHHHHHHHhCCC
Q 018224 163 VITKFCSERIAKYAFEYAYL-NYR--KKVTAVHKA-NIMKLADGLFLESCREVATKYPSIKYNE-IIVDNCCMQLVSKPE 237 (359)
Q Consensus 163 ~~Tr~~~eRiar~AFe~A~~-r~~--~~Vt~v~Ka-Nvl~~tdglf~~~~~eva~eypdI~~~~-~~vD~~~~~Lv~~P~ 237 (359)
-.|.+...++++.+-++|++ -|. -||-+..=. +..+ +...-++.++...++ |++.++- +--|.... +
T Consensus 147 ~~~~e~L~~~a~~~~~~a~~~~Gi~~PrValLN~Ge~~~~-g~e~i~~A~~ll~~~-~~i~~~G~ve~d~~~~------G 218 (345)
T 1vi1_A 147 DAKPEHLVQYAIMGSVYSQQVRGVTSPRVGLLNVGTEDKK-GNELTKQTFQILKET-ANINFIGNVEARDLLD------D 218 (345)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTSCCSSCEEEEEESSSSTTC-SCHHHHHHHHHHHSC-TTSEEEEEEEGGGGGG------T
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCCCeEEEEeCCCCCCC-CCHHHHHHHHHHhcC-CCCeEEeccCCCcccc------C
Confidence 35788889999999999998 553 467776310 0111 233445555554444 7776643 33454432 7
Q ss_pred CccEEEeCCcchhhHHHhh----------------hhhcCCCCc---cceeeeCCCcceEeccccCCCCCcc-------c
Q 018224 238 QFDVMVTPNLYGNLVSNTA----------------AGIAGGTGV---MPGGNVGADTAVFEQGASAGNVGNE-------K 291 (359)
Q Consensus 238 ~fdViv~~NlfGDILSDla----------------a~l~GglGl---~psanig~~~a~FEp~~~~~HGsAp-------d 291 (359)
.+||+||.-.=|+|.-=.. .++.+.+|+ .|... .-..-+.+. . ||+|+ +
T Consensus 219 ~aDVvV~d~~~GNI~lK~~eg~~~~~~~~~k~~f~~~~~~~lg~~l~~P~l~--~~~~~~d~~-~--~gga~llG~~~pv 293 (345)
T 1vi1_A 219 VADVVVTDGFTGNVTLKTLEGSALSIFKMMRDVMTSTLTSKLAAAVLKPKLK--EMKMKMEYS-N--YGGASLFGLKAPV 293 (345)
T ss_dssp SCSEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-------CCHHHHH--HHHHHHCGG-G--SCCEEEETBSSCE
T ss_pred CCCEEEeCchhhhHHHHHHHhhhhhhHHHHHHHhhcchhhhhhhhhccchHH--HHHhcCCcc-c--cccceeecCCccE
Confidence 8999998444466654433 122223332 01110 000001111 2 66666 8
Q ss_pred ccccccCChhHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 018224 292 VVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVK 328 (359)
Q Consensus 292 iaGk~~ANP~a~Ils~ammL~~lg~~~~A~~i~~Av~ 328 (359)
|++++.+|+-+.+.|..+...... .+.-+.|++.+.
T Consensus 294 i~~~g~a~~~~i~~ai~~A~~~a~-~~~~~~i~~~~~ 329 (345)
T 1vi1_A 294 IKAHGSSDSNAVFRAIRQAREMVS-QNVAALIQEEVK 329 (345)
T ss_dssp EECCTTCCHHHHHHHHHHHHHHHH-TTHHHHHHHHTS
T ss_pred EEeCCCCCHHHHHHHHHHHHHHHH-cCHHHHHHHHHh
Confidence 999999999999888876544321 223444555443
No 42
>1u7n_A Fatty acid/phospholipid synthesis protein PLSX; structural genomics, enterococcus faecalis V583, PSI, protein structure initiative; HET: MSE; 2.26A {Enterococcus faecalis} SCOP: c.77.1.4
Probab=59.90 E-value=53 Score=31.25 Aligned_cols=134 Identities=16% Similarity=0.087 Sum_probs=72.1
Q ss_pred ecHHHHHHHHHHHHHHHHh-cCC--CcEEEEEcCCchh---hchHHHHHHHHHHHhhCCceeece-eeHhHHHHHHHhCC
Q 018224 164 ITKFCSERIAKYAFEYAYL-NYR--KKVTAVHKANIMK---LADGLFLESCREVATKYPSIKYNE-IIVDNCCMQLVSKP 236 (359)
Q Consensus 164 ~Tr~~~eRiar~AFe~A~~-r~~--~~Vt~v~KaNvl~---~tdglf~~~~~eva~eypdI~~~~-~~vD~~~~~Lv~~P 236 (359)
.|.+...+++..+-++|++ -|. -||-+. |+-. .+...-++.++...++ |++.++- +--|....
T Consensus 150 ~~~e~L~~~a~~~~~~a~~~~Gi~~PrValL---N~Ge~~~~g~e~v~~A~~ll~~~-~~i~~~G~ve~d~~~~------ 219 (336)
T 1u7n_A 150 NKPEHLVQYAVLGSFYAEKVRNVQNPRVGLL---NNGTEETKGSELTKKAFELLAAD-ETINFVGNVEARELLN------ 219 (336)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCSSCCEEEE---CSCC----CCHHHHHHHHHHHHC-TTSCEEEEECGGGGGG------
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCCCeEEEE---eCcCCCCCCCHHHHHHHHHHhcC-CCCeEEeccCCCcccc------
Confidence 4566677777777799998 443 467776 4311 1222335555544444 7776543 33443322
Q ss_pred CCccEEEeCCcchhhHHHhh------------hhhc-----CCCCc---cceeeeCCCcceEeccccCCCCCcc------
Q 018224 237 EQFDVMVTPNLYGNLVSNTA------------AGIA-----GGTGV---MPGGNVGADTAVFEQGASAGNVGNE------ 290 (359)
Q Consensus 237 ~~fdViv~~NlfGDILSDla------------a~l~-----GglGl---~psanig~~~a~FEp~~~~~HGsAp------ 290 (359)
+.+||+||.-.=|+|.-=.. ..+. +.+|+ .|+-. .-..-+-| .. ||+++
T Consensus 220 g~~DvvV~d~~~GNi~lK~~eg~~~~~~~~~k~~f~~~~~~~~lg~~li~~~l~--~l~~~~d~-~~--~gga~llG~~~ 294 (336)
T 1u7n_A 220 GVADVVVTDGFTGNAVLKSIEGTAMNMMSLLKTAILSEGVKGKMGALLLKNALH--GMKDEMDY-SK--HGGAVLFGLKA 294 (336)
T ss_dssp CSCSEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHH--HHHHHTCG-GG--GCCEEEETBSS
T ss_pred CCCCEEEeCcchhhHHHHHHHhhHHHHHHHHHHHhccCCchhhhhhhhhhhhHH--HHHhccCc-cc--cccceeecCcC
Confidence 78999998444577765444 1121 11111 00000 00000011 12 66666
Q ss_pred -cccccccCChhHHHHHHHHHHh
Q 018224 291 -KVVEQKKANPVALLLSSAMMLR 312 (359)
Q Consensus 291 -diaGk~~ANP~a~Ils~ammL~ 312 (359)
+|++++.+|+-+.+.|..+..+
T Consensus 295 pvi~~~g~a~~~~i~~ai~~A~~ 317 (336)
T 1u7n_A 295 PVIKTHGATGPDAVRYTIRQIHT 317 (336)
T ss_dssp CEEECCTTCCHHHHHHHHHHHHH
T ss_pred cEEEeCCCCCHHHHHHHHHHHHH
Confidence 8999999999999888876544
No 43
>1vmi_A Putative phosphate acetyltransferase; NP_416953.1, structura genomics, JCSG, protein structure initiative, PSI, joint CE structural genomics; 2.32A {Escherichia coli} SCOP: c.77.1.5
Probab=57.90 E-value=21 Score=34.38 Aligned_cols=98 Identities=18% Similarity=0.105 Sum_probs=63.8
Q ss_pred eecHHHHHHHHHHHHHHHHhc-CC-CcEEEEEcCC---chhhchHHHHHHHHHHHhhCCceeecee-eHhHHHHHHHh--
Q 018224 163 VITKFCSERIAKYAFEYAYLN-YR-KKVTAVHKAN---IMKLADGLFLESCREVATKYPSIKYNEI-IVDNCCMQLVS-- 234 (359)
Q Consensus 163 ~~Tr~~~eRiar~AFe~A~~r-~~-~~Vt~v~KaN---vl~~tdglf~~~~~eva~eypdI~~~~~-~vD~~~~~Lv~-- 234 (359)
-.|.+...+|++.+-++|++- |- -||-+..=.+ .-......-++.++...+++|++.++=- -.|++...=+.
T Consensus 184 ~pt~e~l~~ia~~a~~~a~~~~Gi~PrVAlLs~ge~Gs~~~~~~~~i~~A~~llk~~~~~~~v~Gpl~~D~A~~~~~~~~ 263 (355)
T 1vmi_A 184 QPTAAQLADIALASAETWRAITGEEPRVAMLSFSSNGSARHPCVANVQQATEIVRERAPKLVVDGELQFDAAFVPEVAAQ 263 (355)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHSSCCEEEEECSCSTTSSCSHHHHHHHHHHHHHHHHCTTSEEEEEECHHHHHCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCCCCCccHHHHHHHHHHHhccCCCCEEEeCCChHHhhCHHHHhh
Confidence 346888899999999999885 53 4566665322 1111122335555555567898876544 47877665554
Q ss_pred ----CC--CCccEEEeCCcc-hhhHHHhhhhhc
Q 018224 235 ----KP--EQFDVMVTPNLY-GNLVSNTAAGIA 260 (359)
Q Consensus 235 ----~P--~~fdViv~~Nlf-GDILSDlaa~l~ 260 (359)
+| +++||+|++|+| |+|.-=+..-+.
T Consensus 264 k~~~s~~~G~aDvlV~Pd~d~GNI~~K~l~~~~ 296 (355)
T 1vmi_A 264 KAPASPLQGKANVMVFPSLEAGNIGYKIAQRLG 296 (355)
T ss_dssp HCTTCTTTTCCSEEECSSHHHHHHHHHHHHHHH
T ss_pred cCCCCccCCCCCEEEECChhHHhHHHHHHHHcc
Confidence 44 589999999997 888776655443
No 44
>1td9_A Phosphate acetyltransferase; structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.75A {Bacillus subtilis} SCOP: c.77.1.5 PDB: 1xco_A
Probab=57.62 E-value=20 Score=34.10 Aligned_cols=98 Identities=17% Similarity=0.134 Sum_probs=64.3
Q ss_pred eecHHHHHHHHHHHHHHHHhcC-CCcEEEEEcCC-c-hh-hchHHHHHHHHHHHhhCCceeec-eeeHhHHHHHHHh---
Q 018224 163 VITKFCSERIAKYAFEYAYLNY-RKKVTAVHKAN-I-MK-LADGLFLESCREVATKYPSIKYN-EIIVDNCCMQLVS--- 234 (359)
Q Consensus 163 ~~Tr~~~eRiar~AFe~A~~r~-~~~Vt~v~KaN-v-l~-~tdglf~~~~~eva~eypdI~~~-~~~vD~~~~~Lv~--- 234 (359)
-.|.+...++++.+-+++++-| .-||-+..=.+ . .+ .....-++.++...+++|++.++ .+-.|++...=+.
T Consensus 178 ~pt~e~l~~ia~~~~~~~~~~Gi~PrVAlLs~ge~G~~~~~~~~~i~~A~~ll~~~~~~~~v~Gpl~~D~a~~~~~~~~k 257 (329)
T 1td9_A 178 APDSQDLAEIAIESANTAKMFDIEPRVAMLSFSTKGSAKSDETEKVADAVKIAKEKAPELTLDGEFQFDAAFVPSVAEKK 257 (329)
T ss_dssp SCCHHHHHHHHHHHHHHHHTTTCCCCEEEECSSSTTSSCSHHHHHHHHHHHHHHHHCTTSCEEEEECHHHHHCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCeEEEEeCccCCCCCCCchHHHHHHHHHHHhhCCCCEEEeCCcHHHHcCHHHHHhh
Confidence 4578889999999999998854 34576665211 1 11 11113455666556678988776 4457877766554
Q ss_pred ---CC--CCccEEEeCCcc-hhhHHHhhhhhc
Q 018224 235 ---KP--EQFDVMVTPNLY-GNLVSNTAAGIA 260 (359)
Q Consensus 235 ---~P--~~fdViv~~Nlf-GDILSDlaa~l~ 260 (359)
+| +++||+|++|+| |+|.-=+..-+.
T Consensus 258 ~~~s~~~G~aDvlV~pd~d~GNI~~K~l~~~~ 289 (329)
T 1td9_A 258 APDSEIKGDANVFVFPSLEAGNIGYKIAQRLG 289 (329)
T ss_dssp CTTSSCSSCCSEEECSSHHHHHHHHHHHHHTT
T ss_pred CCCCccCCCCCEEEECChhHHHHHHHHHHHhc
Confidence 33 589999999996 787766654443
No 45
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=57.60 E-value=1.1e+02 Score=27.75 Aligned_cols=74 Identities=15% Similarity=0.047 Sum_probs=39.7
Q ss_pred cccccCCCCCCCCcceEEEEcCC---CCcHHHHHHHHHHHHHcCCCeeEEEEEecCcccCCcHHHHHHH--HhcCceeec
Q 018224 16 RSVTYMPRPGDGSPRAVTLIPGD---GIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSI--RKNKVCLKG 90 (359)
Q Consensus 16 ~~~~~~~~~~~~~~~~I~vi~GD---GIGpEV~~~a~~vl~~~~~~ie~~~~~~g~~~~~lp~et~~~~--~~~da~l~G 90 (359)
.|+......+.+++++|+++-.+ -.-.++...+.+.++..|..+.+ ....... .-..+.++.+ ++.|.++..
T Consensus 55 ~pn~~a~~l~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~--~~~~~~~-~~~~~~i~~l~~~~vdGiIi~ 131 (344)
T 3kjx_A 55 VPNKIAGALASNRVNLVAVIIPSLSNMVFPEVLTGINQVLEDTELQPVV--GVTDYLP-EKEEKVLYEMLSWRPSGVIIA 131 (344)
T ss_dssp CCCCCCSCSTTSCCSEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEEEE--EECTTCH-HHHHHHHHHHHTTCCSEEEEE
T ss_pred CCCHHHHHhhcCCCCEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEEEE--EeCCCCH-HHHHHHHHHHHhCCCCEEEEE
Confidence 35544444456678899999544 34456777776666666655543 2222110 0112333333 246887775
Q ss_pred cc
Q 018224 91 GL 92 (359)
Q Consensus 91 ~~ 92 (359)
+.
T Consensus 132 ~~ 133 (344)
T 3kjx_A 132 GL 133 (344)
T ss_dssp CS
T ss_pred CC
Confidence 53
No 46
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=56.40 E-value=1.1e+02 Score=27.23 Aligned_cols=62 Identities=8% Similarity=0.062 Sum_probs=36.3
Q ss_pred CcceEEEEcC---CCCcHHHHHHHHHHHHHcCCCeeEEEEEecCcccCCcHHHHHHH--HhcCceeeccc
Q 018224 28 SPRAVTLIPG---DGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSI--RKNKVCLKGGL 92 (359)
Q Consensus 28 ~~~~I~vi~G---DGIGpEV~~~a~~vl~~~~~~ie~~~~~~g~~~~~lp~et~~~~--~~~da~l~G~~ 92 (359)
++++|+++-- +---.++...+.+.++..|..+.+.. ..... .-..+.++.+ ++.|+++..|.
T Consensus 1 k~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~--~~~~~-~~~~~~i~~l~~~~vdgiIi~~~ 67 (313)
T 3m9w_A 1 KEVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQS--ANGNE-ETQMSQIENMINRGVDVLVIIPY 67 (313)
T ss_dssp --CEEEEEESCCSSSTTHHHHHHHHHHHHHTSCEEEEEE--CTTCH-HHHHHHHHHHHHTTCSEEEEECS
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEC--CCCCH-HHHHHHHHHHHHcCCCEEEEeCC
Confidence 3578888843 44667888888888888886666532 22210 1112334433 46788888775
No 47
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=55.24 E-value=11 Score=36.80 Aligned_cols=59 Identities=25% Similarity=0.277 Sum_probs=34.7
Q ss_pred HHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHh--hCCc-eeeceeeHhHHHHHHHhCCCCccEEEeCCcchhhH
Q 018224 180 AYLNYRKKVTAVHKANIMKLADGLFLESCREVAT--KYPS-IKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLV 252 (359)
Q Consensus 180 A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~--eypd-I~~~~~~vD~~~~~Lv~~P~~fdViv~~NlfGDIL 252 (359)
|.+.|-++|+.|+++++. +.++++.+ .+.+ |++-+--+.. +.-|++|||||++ ++|..|
T Consensus 101 Aa~aGA~~V~ave~s~~~--------~~a~~~~~~n~~~~~i~~i~~~~~~-----~~lpe~~DvivsE-~~~~~l 162 (376)
T 4hc4_A 101 CAQAGARRVYAVEASAIW--------QQAREVVRFNGLEDRVHVLPGPVET-----VELPEQVDAIVSE-WMGYGL 162 (376)
T ss_dssp HHHTTCSEEEEEECSTTH--------HHHHHHHHHTTCTTTEEEEESCTTT-----CCCSSCEEEEECC-CCBTTB
T ss_pred HHHhCCCEEEEEeChHHH--------HHHHHHHHHcCCCceEEEEeeeeee-----ecCCccccEEEee-cccccc
Confidence 345577899999987632 23444432 3433 5554443332 2568999999984 444443
No 48
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=54.75 E-value=28 Score=31.69 Aligned_cols=71 Identities=8% Similarity=0.035 Sum_probs=41.9
Q ss_pred HHHHHHHHh--cCCCcEEEEEcC-CchhhchHHHHHHHHHHHhhCCceeeceee-----Hh---HHHHHHHhC-CCCccE
Q 018224 174 KYAFEYAYL--NYRKKVTAVHKA-NIMKLADGLFLESCREVATKYPSIKYNEII-----VD---NCCMQLVSK-PEQFDV 241 (359)
Q Consensus 174 r~AFe~A~~--r~~~~Vt~v~Ka-Nvl~~tdglf~~~~~eva~eypdI~~~~~~-----vD---~~~~~Lv~~-P~~fdV 241 (359)
+.|.++..+ +|.++|-++.-. +.. +.....+-|.+..+++|++++.... .+ .++.+|++. ..++|.
T Consensus 123 ~~a~~~L~~~~~G~~~I~~i~g~~~~~--~~~~R~~Gf~~al~~~pgi~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a 200 (332)
T 2rjo_A 123 EETATQLFKSMGGKGGVVALGGIFSNV--PAIERKAGLDAALKKFPGIQLLDFQVADWNSQKAFPIMQAWMTRFNSKIKG 200 (332)
T ss_dssp HHHHHHHHHHTTTCEEEEEEECCTTCH--HHHHHHHHHHHHHHTCTTEEEEEEEECTTCHHHHHHHHHHHHHHHGGGEEE
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCc--cHHHHHHHHHHHHHhCCCcEEEeeccCCCCHHHHHHHHHHHHHhcCCCeeE
Confidence 344444444 577888877633 221 2234445677777778888765432 11 245566665 557899
Q ss_pred EEeCC
Q 018224 242 MVTPN 246 (359)
Q Consensus 242 iv~~N 246 (359)
|+|.|
T Consensus 201 I~~~n 205 (332)
T 2rjo_A 201 VWAAN 205 (332)
T ss_dssp EEESS
T ss_pred EEECC
Confidence 99987
No 49
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=54.54 E-value=52 Score=28.92 Aligned_cols=80 Identities=11% Similarity=0.078 Sum_probs=45.0
Q ss_pred cHHHHHHHHHHHHHHHHh--cCCCc--EEEEE-cCCchhhchHHHHHHHHHHHhhCCceeeceee-----Hh---HHHHH
Q 018224 165 TKFCSERIAKYAFEYAYL--NYRKK--VTAVH-KANIMKLADGLFLESCREVATKYPSIKYNEII-----VD---NCCMQ 231 (359)
Q Consensus 165 Tr~~~eRiar~AFe~A~~--r~~~~--Vt~v~-KaNvl~~tdglf~~~~~eva~eypdI~~~~~~-----vD---~~~~~ 231 (359)
...+.+..+++..+.... +|.++ +.++. ..+.. +.....+-+.+..+++|++++...+ .+ .++.+
T Consensus 107 ~~~~~~~~~~~L~~~~g~~~~G~r~i~i~~l~g~~~~~--~~~~R~~gf~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 184 (290)
T 2fn9_A 107 NYYGGVLAGEYFVKFLKEKYPDAKEIPYAELLGILSAQ--PTWDRSNGFHSVVDQYPEFKMVAQQSAEFDRDTAYKVTEQ 184 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSCSCEEEEEEECCTTCH--HHHHHHHHHHHHHTTSTTEEEEEEEECTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCcccceeEEEEEcCCCCc--hHHHHHHHHHHHHHhCCCCEEEEeccCCCCHHHHHHHHHH
Confidence 455566666666554221 15677 65554 22321 2234445677777778887654321 12 34556
Q ss_pred HHhCCCCccEEEeCC
Q 018224 232 LVSKPEQFDVMVTPN 246 (359)
Q Consensus 232 Lv~~P~~fdViv~~N 246 (359)
+++....+|.|+|.|
T Consensus 185 ll~~~~~~~ai~~~~ 199 (290)
T 2fn9_A 185 ILQAHPEIKAIWCGN 199 (290)
T ss_dssp HHHHCTTCCEEEESS
T ss_pred HHHhCCCCcEEEECC
Confidence 666555689999987
No 50
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=54.24 E-value=31 Score=30.28 Aligned_cols=63 Identities=13% Similarity=0.240 Sum_probs=45.7
Q ss_pred CCCCcceEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEecCcccCCcHHHHHHHHh-----cCceeecc
Q 018224 25 GDGSPRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIRK-----NKVCLKGG 91 (359)
Q Consensus 25 ~~~~~~~I~vi~GDGIGpEV~~~a~~vl~~~~~~ie~~~~~~g~~~~~lp~et~~~~~~-----~da~l~G~ 91 (359)
+|.-+.+|++|-|---=-++++++.++|+..|++.|....-+ ...|++..+-+++ +++++-++
T Consensus 8 ~~~m~~~V~IimGS~SD~~v~~~a~~~L~~~Gi~~ev~V~Sa----HR~p~~~~~~~~~a~~~g~~ViIa~A 75 (174)
T 3kuu_A 8 AYAAGVKIAIVMGSKSDWATMQFAADVLTTLNVPFHVEVVSA----HRTPDRLFSFAEQAEANGLHVIIAGN 75 (174)
T ss_dssp SSCCCCCEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCT----TTCHHHHHHHHHHTTTTTCSEEEEEE
T ss_pred cccCCCcEEEEECcHHHHHHHHHHHHHHHHcCCCEEEEEEcc----cCCHHHHHHHHHHHHhCCCcEEEEEC
Confidence 344456799999977778999999999999998854332222 2478888887753 57777665
No 51
>1r5j_A Putative phosphotransacetylase; lactate dehydrogenase-like nucleotide-binding fold, structural genomics, BSGC structure funded by NIH; 2.70A {Streptococcus pyogenes} SCOP: c.77.1.5
Probab=53.10 E-value=47 Score=31.44 Aligned_cols=100 Identities=17% Similarity=0.050 Sum_probs=64.7
Q ss_pred eecHHHHHHHHHHHHHHHHhcC-CCcEEEEEcCCchh-hchH--HHHHHHHHHHhhCCceeecee-eHhHHHHHHHh---
Q 018224 163 VITKFCSERIAKYAFEYAYLNY-RKKVTAVHKANIMK-LADG--LFLESCREVATKYPSIKYNEI-IVDNCCMQLVS--- 234 (359)
Q Consensus 163 ~~Tr~~~eRiar~AFe~A~~r~-~~~Vt~v~KaNvl~-~tdg--lf~~~~~eva~eypdI~~~~~-~vD~~~~~Lv~--- 234 (359)
-.|.+...++++.+-+++++-| +-||-+..=.+.-. ...+ .-++.++...+++|++.++=- -.|++...-+.
T Consensus 182 ~~t~e~l~~ia~~~~~~~~~~Gi~PrVAlLs~~~~G~e~~~~~~~i~~A~~llk~~~~~~~v~Gpl~~D~a~~~~~~~~k 261 (337)
T 1r5j_A 182 DPTAQELAEIAVNTAETAKIFDIDPKIAMLSFSTKGSGKAPQVDKVREATEIATGLNPDLALDGELQFDAAFVPETAAIK 261 (337)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTTCCCCEEEECSCSTTSSCSHHHHHHHHHHHHHHHHCTTSCEEEEECHHHHHCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCeEEEEecCccCCCCCCCcHHHHHHHHHHhccCCCcEEEecCcHHHhcCHHHHHhh
Confidence 4578889999999999998854 24566654322111 1111 246666666667898876644 47887554443
Q ss_pred ---CC--CCccEEEeCCcc-hhhHHHhhhhhcCC
Q 018224 235 ---KP--EQFDVMVTPNLY-GNLVSNTAAGIAGG 262 (359)
Q Consensus 235 ---~P--~~fdViv~~Nlf-GDILSDlaa~l~Gg 262 (359)
+| +++||+|++|++ |+|.-=+..-+.|.
T Consensus 262 ~~~s~~~G~aDvlv~p~~d~GnI~~K~l~~~~~~ 295 (337)
T 1r5j_A 262 APDSAVAGQANTFVFPDLQSGNIGYKIAQRLGMF 295 (337)
T ss_dssp SCSCSSTTCCCEEECSSHHHHHHHHHHHHHTTCC
T ss_pred CCCCccCCCCCEEEECChHHHHHHHHHHHHhcCC
Confidence 22 689999999996 78777666654443
No 52
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=52.38 E-value=1.3e+02 Score=26.91 Aligned_cols=104 Identities=12% Similarity=0.110 Sum_probs=55.4
Q ss_pred cCCCeeEEEEEecCcccCCcHHHH-HHH--HhcCceeeccccCCCCCC--cccchHH-HHhhcCcEEEEEEeecCCCCCC
Q 018224 55 MHAPIYFEKYEVHGDMKRVPQQVL-DSI--RKNKVCLKGGLKTPVGGG--VSSLNVQ-LRKELDLYAALVNCFNLPGLPT 128 (359)
Q Consensus 55 ~~~~ie~~~~~~g~~~~~lp~et~-~~~--~~~da~l~G~~~~p~~~~--~~s~~~~-LR~~ldlyanvRP~~~~pg~~~ 128 (359)
.++++++.....|. |.+.+ +.+ .++|.+++|.-+...... ..|.... ||+
T Consensus 85 ~~v~~~~~~~~~g~-----~~~~i~~~a~~~~~DLiV~G~~g~~~~~~~~~Gs~~~~vl~~------------------- 140 (319)
T 3olq_A 85 AGIQIDIKVIWHNR-----PYEAIIEEVITDKHDLLIKMAHQHDKLGSLIFTPLDWQLLRK------------------- 140 (319)
T ss_dssp TTCCEEEEEEECSC-----HHHHHHHHHHHHTCSEEEEEEBCC--CCSCBCCHHHHHHHHH-------------------
T ss_pred cCCeEEEEEEecCC-----hHHHHHHHHHhcCCCEEEEecCcCchhhcccccccHHHHHhc-------------------
Confidence 37777776543442 44444 333 358999999875431111 1121111 211
Q ss_pred CcccccEEEEecCCcceEeccceeeeCCEEEEEEeec-----HHHHHHHHHHHHHHHHhc--CCCcEEEEEc
Q 018224 129 RHQNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVIT-----KFCSERIAKYAFEYAYLN--YRKKVTAVHK 193 (359)
Q Consensus 129 ~~~~iDivivREnteG~Y~g~~~~~~~~va~~~~~~T-----r~~~eRiar~AFe~A~~r--~~~~Vt~v~K 193 (359)
-+.+++|+++.... . ...+...+..-. +..+++.+++|+++|+.. + .+|+++|=
T Consensus 141 --~~~PVlvv~~~~~~---~-----~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~-a~l~ll~v 201 (319)
T 3olq_A 141 --CPAPVWMVKDKEWP---E-----YGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKD-PDVHLLSA 201 (319)
T ss_dssp --CSSCEEEEESSCCC---T-----TCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSS-CCEEEEEE
T ss_pred --CCCCEEEecCcccc---c-----CCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCC-CeEEEEEe
Confidence 13557788765411 1 112333333222 125789999999999986 4 56888764
No 53
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=52.38 E-value=36 Score=29.97 Aligned_cols=182 Identities=11% Similarity=0.096 Sum_probs=89.7
Q ss_pred CCCcceEEEEcCCCC---cHHHHHHHHHHHHHcCCCeeEEEEEecCcccCCcHHHHHHH--HhcCceeeccccCCCCCCc
Q 018224 26 DGSPRAVTLIPGDGI---GPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSI--RKNKVCLKGGLKTPVGGGV 100 (359)
Q Consensus 26 ~~~~~~I~vi~GDGI---GpEV~~~a~~vl~~~~~~ie~~~~~~g~~~~~lp~et~~~~--~~~da~l~G~~~~p~~~~~ 100 (359)
.+++++|+++-.+-- -.++...+.+.++..|..+.+ +...... .-..+.++.+ ++.|+++..+.... ..
T Consensus 5 ~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~--~~~~~~~-~~~~~~~~~l~~~~vdgiI~~~~~~~---~~ 78 (293)
T 3l6u_A 5 SPKRNIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALV--ATSQNSR-ISEREQILEFVHLKVDAIFITTLDDV---YI 78 (293)
T ss_dssp ----CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEE--EECSSCH-HHHHHHHHHHHHTTCSEEEEECSCTT---TT
T ss_pred CCCCcEEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEE--ECCCCCH-HHHHHHHHHHHHcCCCEEEEecCChH---HH
Confidence 456789999865433 345666666666666765554 3333210 0112333333 45788887665322 11
Q ss_pred ccchHHHHhhcCcEEEEEEeecCCCCCCCcccccEEEEecCCcceEeccceeeeCCEEEEEEeecHHHHHHHHHHHHHH-
Q 018224 101 SSLNVQLRKELDLYAALVNCFNLPGLPTRHQNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEY- 179 (359)
Q Consensus 101 ~s~~~~LR~~ldlyanvRP~~~~pg~~~~~~~iDivivREnteG~Y~g~~~~~~~~va~~~~~~Tr~~~eRiar~AFe~- 179 (359)
...+++..+ .++.+|++=...++ ......+..-...+.+..+++..+.
T Consensus 79 ---~~~~~~~~~------------------~~iPvV~~~~~~~~----------~~~~~~V~~D~~~~g~~~~~~l~~~~ 127 (293)
T 3l6u_A 79 ---GSAIEEAKK------------------AGIPVFAIDRMIRS----------DAVVSSITSNNQMIGEQLASYIKNEL 127 (293)
T ss_dssp ---HHHHHHHHH------------------TTCCEEEESSCCCC----------TTCSEEEEECHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHH------------------cCCCEEEecCCCCC----------CcceeEEecCHHHHHHHHHHHHHHHh
Confidence 112222111 12334444211111 0001123333455666666666663
Q ss_pred -HHh-cCCCcEEEEEc-CCchhhchHHHHHHHHHHHhhCCceeeceeeH--------hHHHHHHHhCCCCccEEEeCC
Q 018224 180 -AYL-NYRKKVTAVHK-ANIMKLADGLFLESCREVATKYPSIKYNEIIV--------DNCCMQLVSKPEQFDVMVTPN 246 (359)
Q Consensus 180 -A~~-r~~~~Vt~v~K-aNvl~~tdglf~~~~~eva~eypdI~~~~~~v--------D~~~~~Lv~~P~~fdViv~~N 246 (359)
-.+ +.++++-++.- .+.. +.....+-+.+..+++|++++..... -.++.++++...++|.|+|.|
T Consensus 128 ~g~~~~~~~~i~~i~g~~~~~--~~~~R~~gf~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~ 203 (293)
T 3l6u_A 128 IKQTGRSTGRIVEITGTANVY--TTNERHRGFLKGIENEPTLSIVDSVSGNYDPVTSERVMRQVIDSGIPFDAVYCHN 203 (293)
T ss_dssp HHHHSCSCEEEEEEECSTTCH--HHHHHHHHHHHHHTTCTTEEEEEEEECTTCHHHHHHHHHHHHHTTCCCSEEEESS
T ss_pred ccCCCCCCceEEEEECCCCCc--hHHHHHHHHHHHHHhCCCcEEeeeccCCCCHHHHHHHHHHHHHhCCCCCEEEECC
Confidence 222 11127777752 2221 23344567777778888888754321 234567777767899999987
No 54
>1yco_A Branched-chain phosphotransacylase; structural genomics, protein structure initiative, PSI, nysgxrc; 2.40A {Enterococcus faecalis}
Probab=51.20 E-value=1.5e+02 Score=27.38 Aligned_cols=105 Identities=16% Similarity=0.052 Sum_probs=64.7
Q ss_pred cHHHHHHHHHHHHHHHHhcCC--CcEEEEE---cCCchhhchHHHHHHHHHH--HhhCCceeece-eeHhHHHHHHHh--
Q 018224 165 TKFCSERIAKYAFEYAYLNYR--KKVTAVH---KANIMKLADGLFLESCREV--ATKYPSIKYNE-IIVDNCCMQLVS-- 234 (359)
Q Consensus 165 Tr~~~eRiar~AFe~A~~r~~--~~Vt~v~---KaNvl~~tdglf~~~~~ev--a~eypdI~~~~-~~vD~~~~~Lv~-- 234 (359)
|-+..-+|+..+-++|++-|. -||-+.. |.|- ....-++..+-+ .++.|++.++= +..|++...=++
T Consensus 126 ~~e~l~~ia~~a~~~a~~lGi~~PkVAlLs~~~~g~~---~~~~~~~a~~l~k~l~~~~~~~~dG~i~~D~A~~~~~~~~ 202 (279)
T 1yco_A 126 TQATLIEIVENAKEVAQKLGLHHPKIALLSAAENFNP---KMPSSVLAKEVTAHFNDQQEATVFGPLSLDLATSEEAVAH 202 (279)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSSCEEEEECSCSSCCT---TCHHHHHHHHHHHHHSSCSSCEEEEEECHHHHHCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCeEEEEeccccCCC---CChHHHHHHHHHHHHHhCCCCEEEeeCcHHhhcCHHHHHh
Confidence 366777888999999998764 3566653 4442 122334333221 22347777654 446866554444
Q ss_pred ----CC--CCccEEEeCCc-chhhHHHhhhhhcCCCCccceeeeCCC
Q 018224 235 ----KP--EQFDVMVTPNL-YGNLVSNTAAGIAGGTGVMPGGNVGAD 274 (359)
Q Consensus 235 ----~P--~~fdViv~~Nl-fGDILSDlaa~l~GglGl~psanig~~ 274 (359)
++ +.-||+||||+ =|||+--+.-.+.|+ -..| .-+|-+
T Consensus 203 k~~~s~~~G~adVlV~Pd~~aGNi~~K~~~~~~~~-~~gg-illG~~ 247 (279)
T 1yco_A 203 KRYSGPIMGDADILVVPTIDVGNCLYKSLTLFGHA-KVGG-TIVGTK 247 (279)
T ss_dssp TTCCSSCSSCCSEEECSSHHHHHHHHHHHHHHSCC-EEEE-EEESBS
T ss_pred cCCCCccCCCCCEEEECCchHHHHHHHHHHHhCCC-eEee-eeecCC
Confidence 44 46799999999 699998888776655 2333 455544
No 55
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=49.88 E-value=47 Score=28.74 Aligned_cols=73 Identities=10% Similarity=0.028 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHhhCCceeeceee-----Hh---HHHHHHHhCCC-CccEE
Q 018224 172 IAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEII-----VD---NCCMQLVSKPE-QFDVM 242 (359)
Q Consensus 172 iar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~eypdI~~~~~~-----vD---~~~~~Lv~~P~-~fdVi 242 (359)
..+.|.++-.++|++++-++.-..-.. +.....+-+.+..++++ ++..... .+ .++.++++... .+|.|
T Consensus 107 ~~~~a~~~L~~~G~~~i~~i~~~~~~~-~~~~R~~gf~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ai 184 (272)
T 3o74_A 107 ASRQLAASLLSSAPRSIALIGARPELS-VSQARAGGFDEALQGYT-GEVRRYQGEAFSRECGQRLMQQLIDDLGGLPDAL 184 (272)
T ss_dssp HHHHHHHHHHTTCCSEEEEEEECTTSH-HHHHHHHHHHHHTTTCC-SEEEEEEESSSSHHHHHHHHHHHHHHHTSCCSEE
T ss_pred HHHHHHHHHHHCCCcEEEEEecCCCCc-cHHHHHHHHHHHHHHcC-CChheeecCCCCHHHHHHHHHHHHhcCCCCCcEE
Confidence 345566677777888888875432221 23344556777766664 4433222 11 34556665544 79999
Q ss_pred EeCC
Q 018224 243 VTPN 246 (359)
Q Consensus 243 v~~N 246 (359)
+|.|
T Consensus 185 ~~~~ 188 (272)
T 3o74_A 185 VTTS 188 (272)
T ss_dssp EESS
T ss_pred EEeC
Confidence 9987
No 56
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=49.79 E-value=37 Score=29.76 Aligned_cols=61 Identities=18% Similarity=0.248 Sum_probs=44.0
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEecCcccCCcHHHHHHHHh-----cCceeecc
Q 018224 27 GSPRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIRK-----NKVCLKGG 91 (359)
Q Consensus 27 ~~~~~I~vi~GDGIGpEV~~~a~~vl~~~~~~ie~~~~~~g~~~~~lp~et~~~~~~-----~da~l~G~ 91 (359)
..+.+|++|-|---=-++++++.++|+..|+++|. .-+|. ...|++..+-.++ .++++-++
T Consensus 10 ~~~P~V~IimGS~SD~~v~~~a~~~l~~~gi~~ev--~V~sa--HR~p~~l~~~~~~a~~~g~~ViIa~A 75 (173)
T 4grd_A 10 HSAPLVGVLMGSSSDWDVMKHAVAILQEFGVPYEA--KVVSA--HRMPDEMFDYAEKARERGLRAIIAGA 75 (173)
T ss_dssp CSSCSEEEEESSGGGHHHHHHHHHHHHHTTCCEEE--EECCT--TTSHHHHHHHHHHHTTTTCSEEEEEE
T ss_pred CCCCeEEEEeCcHhHHHHHHHHHHHHHHcCCCEEE--EEEcc--ccCHHHHHHHHHHHHhcCCeEEEEec
Confidence 34678999999777788999999999999977443 22332 2478888776654 46666665
No 57
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=49.25 E-value=70 Score=28.34 Aligned_cols=65 Identities=8% Similarity=0.033 Sum_probs=36.3
Q ss_pred CCCCcceEEEEcCCCC---cH-HHHHHHHHHHHHcCCCeeEEEEEecCcccCCcHHHHHHH--HhcCceeeccc
Q 018224 25 GDGSPRAVTLIPGDGI---GP-LVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSI--RKNKVCLKGGL 92 (359)
Q Consensus 25 ~~~~~~~I~vi~GDGI---Gp-EV~~~a~~vl~~~~~~ie~~~~~~g~~~~~lp~et~~~~--~~~da~l~G~~ 92 (359)
+.+++++|+++--+-- -. ++...+.+.++..|..+.+. ...... .-..+.++.+ ++.|+++..+.
T Consensus 9 ~~~~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~~~-~~~~~~~~~l~~~~vdGiIi~~~ 79 (301)
T 3miz_A 9 RSSRSNTFGIITDYVSTTPYSVDIVRGIQDWANANGKTILIA--NTGGSS-EREVEIWKMFQSHRIDGVLYVTM 79 (301)
T ss_dssp ---CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHTTCEEEEE--ECTTCH-HHHHHHHHHHHHTTCSEEEEEEE
T ss_pred hhCCCCEEEEEeCCCcCcccHHHHHHHHHHHHHHCCCEEEEE--eCCCCh-HHHHHHHHHHHhCCCCEEEEecC
Confidence 3456789999855432 23 88899988888888666543 222110 0122333333 35677776553
No 58
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=47.65 E-value=40 Score=34.13 Aligned_cols=66 Identities=11% Similarity=0.158 Sum_probs=42.1
Q ss_pred HHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHhhCCceeeceeeHhHHHHHHHhCCCCccEEEeCCcch
Q 018224 175 YAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYG 249 (359)
Q Consensus 175 ~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~eypdI~~~~~~vD~~~~~Lv~~P~~fdViv~~NlfG 249 (359)
++..+|+. | -.||-+|=+ .--.++++.-|++.+.+.+++...|+-...--..+++||||+|.-++=
T Consensus 80 ~~~~la~~-g-a~V~giD~~-------~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~~e 145 (569)
T 4azs_A 80 FSLSLASK-G-ATIVGIDFQ-------QENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSVFH 145 (569)
T ss_dssp HHHHHHHT-T-CEEEEEESC-------HHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESCHH
T ss_pred HHHHHHhC-C-CEEEEECCC-------HHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcchh
Confidence 45556664 4 579999832 233667887787777666666555543221123678999999987754
No 59
>3uf6_A LMO1369 protein; structural genomics, the center for structural genomics of I diseases, csgid, unknown function, transferase; HET: COD; 1.80A {Listeria monocytogenes} PDB: 3tng_A* 3u9e_A*
Probab=46.03 E-value=1.1e+02 Score=28.53 Aligned_cols=214 Identities=15% Similarity=0.119 Sum_probs=113.2
Q ss_pred CCCCcceEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEecCc----------cc----CCcHH----HHHHHH--hc
Q 018224 25 GDGSPRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGD----------MK----RVPQQ----VLDSIR--KN 84 (359)
Q Consensus 25 ~~~~~~~I~vi~GDGIGpEV~~~a~~vl~~~~~~ie~~~~~~g~~----------~~----~lp~e----t~~~~~--~~ 84 (359)
+...++||++-.|+ -++|++++.++++. ++ + +.+.+|.+ .+ .-+++ ....++ ++
T Consensus 14 ~~~~~kriv~~e~~--d~~vl~Aa~~a~~e-g~-~--~~ILvG~~~~I~~~~~~~~eIid~~~~~~aar~a~~mV~~G~A 87 (291)
T 3uf6_A 14 AETSSFVFAVAGAD--DEVVLETIRLALKQ-KL-G--KFLLFGKKEDKTLTANESVTWIQTDTAEAAAQGAILAVKNKEA 87 (291)
T ss_dssp CCCCCCEEEEETCC--SHHHHHHHHHHHHT-TC-C--EEEEEESSCCHHHHTSTTEEEEECCSHHHHHHHHHHHHHTTSC
T ss_pred hhcCCCeEEEeCCC--CHHHHHHHHHHHHc-CC-c--eEEEEcCHHHHhhhccCCCEEECCCChHHHHHHHHHHHHCCCC
Confidence 34456899998665 58999999999886 31 1 23344421 01 11122 223333 47
Q ss_pred CceeeccccCCCCCCcccchHHHHhhcCcEEEEEEeecCCCCCCCcccccEEEEecCCcceEeccceeeeCCEEEEEEee
Q 018224 85 KVCLKGGLKTPVGGGVSSLNVQLRKELDLYAALVNCFNLPGLPTRHQNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVI 164 (359)
Q Consensus 85 da~l~G~~~~p~~~~~~s~~~~LR~~ldlyanvRP~~~~pg~~~~~~~iDivivREnteG~Y~g~~~~~~~~va~~~~~~ 164 (359)
|+.++|.++| ...||-.|+--..+||.+.+ ..+-++++ ....|.+. ..+.++ .. --
T Consensus 88 Da~vsG~~~t---------~~~lr~~l~~~~G~r~~~~v-------s~~~~~~~-p~~~~~~~----~~D~gv--N~-~P 143 (291)
T 3uf6_A 88 DILVKGFIPT---------ATLMHHVLKKENGLRTDQLL-------SQIAIFDI-PTYHKPLL----ITDCAM--NV-AP 143 (291)
T ss_dssp SEEEECSSCH---------HHHHHHHTCGGGSCCCSSCC-------EEEEEEEC-TTSSSCEE----EECSSS--CS-SC
T ss_pred CEEEECCCCh---------HHHHHHHhccccCCCCCcee-------eEEEEEEE-cCCCCcEE----Eeecee--ec-CC
Confidence 9999988643 12455544322223443211 11122222 11112111 000010 11 12
Q ss_pred cHHHHHHHHHHHHHHHHhcCC--CcEEEE---EcCCchhhchHHHHHHHHHHHhh-CCceeecee-eHhHHHHHHH----
Q 018224 165 TKFCSERIAKYAFEYAYLNYR--KKVTAV---HKANIMKLADGLFLESCREVATK-YPSIKYNEI-IVDNCCMQLV---- 233 (359)
Q Consensus 165 Tr~~~eRiar~AFe~A~~r~~--~~Vt~v---~KaNvl~~tdglf~~~~~eva~e-ypdI~~~~~-~vD~~~~~Lv---- 233 (359)
|-+..-.|+..+-++|++-|- -||-+. +|.|-. ...-++.. +..++ .|++.++-. ..|++...=+
T Consensus 144 ~~e~la~ia~~aa~~ar~~Gie~PkVAlLS~s~~gs~~---~~~~~~A~-~llk~~~~~~~vdGel~~D~Al~~~~~~~k 219 (291)
T 3uf6_A 144 KTKEKIAITENALAVAHQIGITNPKIALLSAVEEVTAK---MPSTLEAQ-EVVQHFGNQISVSGPLALDVAISKEAALHK 219 (291)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCSCCEEEECSCSSCCTT---SHHHHHHH-HHHHHHTTTSCEEEEECHHHHHCHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCccCCcC---chHHHHHH-HHHHhhCCCCEEEecchHHHhcCHHHHHhh
Confidence 567778888899999998664 356554 444421 11223433 34444 488887765 4787754432
Q ss_pred --hCC--CCccEEEeCCc-chhhHHHhhhhhcCCCCccceeeeCCC
Q 018224 234 --SKP--EQFDVMVTPNL-YGNLVSNTAAGIAGGTGVMPGGNVGAD 274 (359)
Q Consensus 234 --~~P--~~fdViv~~Nl-fGDILSDlaa~l~GglGl~psanig~~ 274 (359)
.+| ++.||+|+||+ =|+|+--+...+.| ..+.| .-.|-.
T Consensus 220 ~p~s~vaG~Anvli~P~l~agNi~yK~l~~~~~-~~~Gp-il~G~~ 263 (291)
T 3uf6_A 220 GITDSSAGEADILIAPNIETGNALYKSLVYFAG-AKVGS-AVVGAK 263 (291)
T ss_dssp TCCCTTTTCCSEEECSSHHHHHHHHHHHHHHSC-CEEEE-EEESSS
T ss_pred CCCCccCCCCCEEEECChHHHHHHHHHHHHhcC-Ccccc-ceecCC
Confidence 223 47899999998 89999988876655 33333 445543
No 60
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=45.62 E-value=32 Score=28.03 Aligned_cols=26 Identities=35% Similarity=0.298 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEc
Q 018224 167 FCSERIAKYAFEYAYLNYRKKVTAVHK 193 (359)
Q Consensus 167 ~~~eRiar~AFe~A~~r~~~~Vt~v~K 193 (359)
..+++.+++|.++|++.+ .+|+++|=
T Consensus 36 ~~s~~al~~A~~la~~~~-a~l~llhV 61 (155)
T 3dlo_A 36 DRAERVLRFAAEEARLRG-VPVYVVHS 61 (155)
T ss_dssp HHHHHHHHHHHHHHHHHT-CCEEEEEE
T ss_pred HHHHHHHHHHHHHHHhcC-CEEEEEEE
Confidence 568999999999999874 57888764
No 61
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=45.32 E-value=64 Score=29.16 Aligned_cols=72 Identities=10% Similarity=0.021 Sum_probs=39.7
Q ss_pred HHHHHHHh--cCCCcEEEEEcCCchhhchHHHHHHHHHHHhhCCceeeceee-----Hh---HHHHHHHhCCCCccEEEe
Q 018224 175 YAFEYAYL--NYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEII-----VD---NCCMQLVSKPEQFDVMVT 244 (359)
Q Consensus 175 ~AFe~A~~--r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~eypdI~~~~~~-----vD---~~~~~Lv~~P~~fdViv~ 244 (359)
.|.++..+ .|.+++-++.-..-.. +.....+-+.+..+++|++++.... .+ .++.++++....+|.|+|
T Consensus 116 ~a~~~L~~~~~G~~~I~~i~~~~~~~-~~~~R~~Gf~~al~~~pg~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~aI~~ 194 (325)
T 2x7x_A 116 SVGNYIASSLKGKGNIVELTGLSGST-PAMERHQGFMAAISKFPDIKLIDKADAAWERGPAEIEMDSMLRRHPKIDAVYA 194 (325)
T ss_dssp HHHHHHHHHTTTEEEEEEEESCTTSH-HHHHHHHHHHHHHHTCTEEEEEEEEECTTSHHHHHHHHHHHHHHCSCCCEEEE
T ss_pred HHHHHHHHHcCCCceEEEEECCCCCc-cHHHHHHHHHHHHHhCCCCEEEeeecCCCCHHHHHHHHHHHHHhCCCCCEEEE
Confidence 34444444 2677887775321111 1223345566666778888764321 11 234566655456899999
Q ss_pred CCc
Q 018224 245 PNL 247 (359)
Q Consensus 245 ~Nl 247 (359)
.|-
T Consensus 195 ~nd 197 (325)
T 2x7x_A 195 HND 197 (325)
T ss_dssp SST
T ss_pred CCC
Confidence 874
No 62
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=45.30 E-value=1.1e+02 Score=26.43 Aligned_cols=73 Identities=8% Similarity=-0.013 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHhhCCceeece-------eeHh---HHHHHHHhCCCCccE
Q 018224 172 IAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNE-------IIVD---NCCMQLVSKPEQFDV 241 (359)
Q Consensus 172 iar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~eypdI~~~~-------~~vD---~~~~~Lv~~P~~fdV 241 (359)
..+.|.++-.++|++++.++.-..-.. ......+-+.+..+++. ++++. ...+ ..+.++++....+|.
T Consensus 107 ~~~~a~~~L~~~G~~~i~~i~~~~~~~-~~~~R~~gf~~~l~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a 184 (275)
T 3d8u_A 107 VGKACTRHLIEQGFKNVGFIGARGNHS-TLQRQLHGWQSAMIENY-LTPDHFLTTHEAPSSQLGAEGLAKLLLRDSSLNA 184 (275)
T ss_dssp HHHHHHHHHHTTTCCCEEEEECSCSSH-HHHHHHHHHHHHHHHTT-CCCCCEEECSSCCCHHHHHHHHHHHHTTCTTCCE
T ss_pred HHHHHHHHHHHCCCCeEEEEcCCCCCc-hHHHHHHHHHHHHHHcC-CCCCccEEEeCCCChhHHHHHHHHHHhCCCCCCE
Confidence 344455555566888887775332111 11223344555444432 22111 1122 345677777677999
Q ss_pred EEeCC
Q 018224 242 MVTPN 246 (359)
Q Consensus 242 iv~~N 246 (359)
|+|.|
T Consensus 185 i~~~~ 189 (275)
T 3d8u_A 185 LVCSH 189 (275)
T ss_dssp EEESS
T ss_pred EEEcC
Confidence 99987
No 63
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=44.70 E-value=38 Score=29.57 Aligned_cols=61 Identities=10% Similarity=0.163 Sum_probs=43.0
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEecCcccCCcHHHHHHHHh-----cCceeecc
Q 018224 27 GSPRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIRK-----NKVCLKGG 91 (359)
Q Consensus 27 ~~~~~I~vi~GDGIGpEV~~~a~~vl~~~~~~ie~~~~~~g~~~~~lp~et~~~~~~-----~da~l~G~ 91 (359)
+.+.+|++|-|---=-++++++.++|+..|++.|.... |. ...|++..+-+++ +++++-++
T Consensus 4 m~~~~V~IimgS~SD~~v~~~a~~~l~~~gi~~ev~V~--Sa--HR~p~~~~~~~~~a~~~g~~ViIa~A 69 (169)
T 3trh_A 4 MNKIFVAILMGSDSDLSTMETAFTELKSLGIPFEAHIL--SA--HRTPKETVEFVENADNRGCAVFIAAA 69 (169)
T ss_dssp --CCEEEEEESCGGGHHHHHHHHHHHHHTTCCEEEEEC--CT--TTSHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred CCCCcEEEEECcHHhHHHHHHHHHHHHHcCCCEEEEEE--cc--cCCHHHHHHHHHHHHhCCCcEEEEEC
Confidence 34568999999777788999999999999988553322 22 2478887776543 57777665
No 64
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=43.25 E-value=1.8e+02 Score=25.87 Aligned_cols=63 Identities=8% Similarity=0.030 Sum_probs=36.1
Q ss_pred CcceEEEEcCC---CCcHHHHHHHHHHHHHcCCCeeEEEEEecCcccCCcHHHHHHH--HhcCceeecccc
Q 018224 28 SPRAVTLIPGD---GIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSI--RKNKVCLKGGLK 93 (359)
Q Consensus 28 ~~~~I~vi~GD---GIGpEV~~~a~~vl~~~~~~ie~~~~~~g~~~~~lp~et~~~~--~~~da~l~G~~~ 93 (359)
++++|+++--+ .--.++...+.+.++..|..+.+.. ..... .-..+.++.+ ++.|+++..|..
T Consensus 2 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~--~~~~~-~~~~~~i~~~~~~~vdgiIi~~~~ 69 (330)
T 3uug_A 2 DKGSVGIAMPTKSSARWIDDGNNIVKQLQEAGYKTDLQY--ADDDI-PNQLSQIENMVTKGVKVLVIASID 69 (330)
T ss_dssp CCCEEEEEECCSSSTHHHHHHHHHHHHHHHTTCEEEEEE--CTTCH-HHHHHHHHHHHHHTCSEEEECCSS
T ss_pred CCcEEEEEeCCCcchHHHHHHHHHHHHHHHcCCEEEEee--CCCCH-HHHHHHHHHHHHcCCCEEEEEcCC
Confidence 56889988544 3455677777777777776665533 22110 0111223332 468998887753
No 65
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=42.98 E-value=77 Score=27.72 Aligned_cols=62 Identities=8% Similarity=0.118 Sum_probs=36.2
Q ss_pred cceEEEEcCCC---CcHHHHHHHHHHHHHcCCCeeEEEEEecCcccCCcHHHHHHH--HhcCceeecccc
Q 018224 29 PRAVTLIPGDG---IGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSI--RKNKVCLKGGLK 93 (359)
Q Consensus 29 ~~~I~vi~GDG---IGpEV~~~a~~vl~~~~~~ie~~~~~~g~~~~~lp~et~~~~--~~~da~l~G~~~ 93 (359)
+++|+++--+- --.++.....+.++..|..+.+. ...... .-..+.++.+ ++.|+++.-|..
T Consensus 15 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~~~-~~~~~~~~~l~~~~vdgiIi~~~~ 81 (298)
T 3tb6_A 15 NKTIGVLTTYISDYIFPSIIRGIESYLSEQGYSMLLT--STNNNP-DNERRGLENLLSQHIDGLIVEPTK 81 (298)
T ss_dssp CCEEEEEESCSSSTTHHHHHHHHHHHHHHTTCEEEEE--ECTTCH-HHHHHHHHHHHHTCCSEEEECCSS
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEE--eCCCCh-HHHHHHHHHHHHCCCCEEEEeccc
Confidence 48999995543 34577777777777777666543 322210 1122333433 467888887754
No 66
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=42.71 E-value=60 Score=25.73 Aligned_cols=61 Identities=10% Similarity=0.188 Sum_probs=43.3
Q ss_pred CCCCCcceEEEEcCCCCcHHH--HHHHHHHHHHcCCCeeEEEEEecCcccCCcHHHHHHHHhcCceeeccc
Q 018224 24 PGDGSPRAVTLIPGDGIGPLV--TNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIRKNKVCLKGGL 92 (359)
Q Consensus 24 ~~~~~~~~I~vi~GDGIGpEV--~~~a~~vl~~~~~~ie~~~~~~g~~~~~lp~et~~~~~~~da~l~G~~ 92 (359)
....+.++|.++=|-|+|-.. .....+.++..+++++.+...+.. ++.. ..++|+++.++-
T Consensus 16 ~~~~~~kkIlvvC~sG~gTS~ll~~kl~~~~~~~gi~~~V~~~~~~~----~~~~----~~~~DlIist~~ 78 (113)
T 1tvm_A 16 YFQGSKRKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNE----IETY----MDGVHLICTTAR 78 (113)
T ss_dssp CCSCSSEEEEEESCSCSSHHHHHHHHHHHHHHHTTCCEEEEEECTTT----TTTS----TTSCSEEEESSC
T ss_pred hhcccccEEEEECCCCHHHHHHHHHHHHHHHHHcCCeEEEEEecHHH----Hhhc----cCCCCEEEECCc
Confidence 344456899999999999876 466778888888887766655542 3331 357899998774
No 67
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=42.52 E-value=50 Score=29.15 Aligned_cols=59 Identities=19% Similarity=0.240 Sum_probs=44.0
Q ss_pred cceEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEecCcccCCcHHHHHHHHh-----cCceeecc
Q 018224 29 PRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIRK-----NKVCLKGG 91 (359)
Q Consensus 29 ~~~I~vi~GDGIGpEV~~~a~~vl~~~~~~ie~~~~~~g~~~~~lp~et~~~~~~-----~da~l~G~ 91 (359)
+.+|++|-|---=-++++++..+|+..|++.|.. -+|. ...|+...+-.++ +++++-++
T Consensus 21 ~~~V~IimGS~SD~~v~~~a~~~L~~~Gi~~dv~--V~Sa--HR~p~~l~~~~~~a~~~g~~ViIa~A 84 (182)
T 1u11_A 21 APVVGIIMGSQSDWETMRHADALLTELEIPHETL--IVSA--HRTPDRLADYARTAAERGLNVIIAGA 84 (182)
T ss_dssp CCSEEEEESSGGGHHHHHHHHHHHHHTTCCEEEE--ECCT--TTCHHHHHHHHHHTTTTTCCEEEEEE
T ss_pred CCEEEEEECcHHHHHHHHHHHHHHHHcCCCeEEE--EEcc--cCCHHHHHHHHHHHHhCCCcEEEEec
Confidence 4679999998777899999999999999884432 2222 2478888877765 57777666
No 68
>4aty_A Terephthalate 1,2-CIS-dihydrodiol dehydrogenase; oxidoreductase; 1.85A {Burkholderia xenovorans LB400}
Probab=42.46 E-value=15 Score=35.45 Aligned_cols=21 Identities=38% Similarity=0.605 Sum_probs=17.6
Q ss_pred CcceEEEEcCC--CCcHHHHHHH
Q 018224 28 SPRAVTLIPGD--GIGPLVTNAV 48 (359)
Q Consensus 28 ~~~~I~vi~GD--GIGpEV~~~a 48 (359)
++.+|++-.|| ||||||+-.+
T Consensus 7 ~~~kIaIT~GDPaGIGpEIilKa 29 (349)
T 4aty_A 7 RAMTVALAIGDPNGIGPEIAVKA 29 (349)
T ss_dssp CCCCEEEECCCTTSSHHHHHHHH
T ss_pred CCCeEEEECCCcchhHHHHHHHH
Confidence 45789999997 9999998655
No 69
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=42.16 E-value=48 Score=28.93 Aligned_cols=59 Identities=17% Similarity=0.228 Sum_probs=43.4
Q ss_pred cceEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEecCcccCCcHHHHHHHHh-----cCceeecc
Q 018224 29 PRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIRK-----NKVCLKGG 91 (359)
Q Consensus 29 ~~~I~vi~GDGIGpEV~~~a~~vl~~~~~~ie~~~~~~g~~~~~lp~et~~~~~~-----~da~l~G~ 91 (359)
+..|++|-|---=-++++++.++|+..|++.|.. -+|. ...|++..+-.++ +++++-++
T Consensus 11 ~~~V~IimGS~SD~~v~~~a~~~L~~~Gi~~dv~--V~Sa--HR~p~~l~~~~~~a~~~g~~ViIa~A 74 (170)
T 1xmp_A 11 KSLVGVIMGSTSDWETMKYACDILDELNIPYEKK--VVSA--HRTPDYMFEYAETARERGLKVIIAGA 74 (170)
T ss_dssp CCSEEEEESSGGGHHHHHHHHHHHHHTTCCEEEE--ECCT--TTSHHHHHHHHHHTTTTTCCEEEEEE
T ss_pred CCcEEEEECcHHHHHHHHHHHHHHHHcCCCEEEE--EEec--cCCHHHHHHHHHHHHhCCCcEEEEEC
Confidence 3579999887777899999999999999884432 2222 2478888877765 57777666
No 70
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=41.61 E-value=54 Score=28.74 Aligned_cols=59 Identities=19% Similarity=0.249 Sum_probs=43.2
Q ss_pred cceEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEecCcccCCcHHHHHHH-----HhcCceeecc
Q 018224 29 PRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSI-----RKNKVCLKGG 91 (359)
Q Consensus 29 ~~~I~vi~GDGIGpEV~~~a~~vl~~~~~~ie~~~~~~g~~~~~lp~et~~~~-----~~~da~l~G~ 91 (359)
+.+|++|-|---=-++++++.++|+..|++.|... +|. ...|++..+-+ +.+++++-++
T Consensus 7 ~~~V~IimgS~SD~~v~~~a~~~L~~~gi~~ev~V--~Sa--HR~p~~~~~~~~~a~~~g~~ViIa~A 70 (174)
T 3lp6_A 7 RPRVGVIMGSDSDWPVMADAAAALAEFDIPAEVRV--VSA--HRTPEAMFSYARGAAARGLEVIIAGA 70 (174)
T ss_dssp CCSEEEEESCGGGHHHHHHHHHHHHHTTCCEEEEE--CCT--TTCHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred CCeEEEEECcHHhHHHHHHHHHHHHHcCCCEEEEE--ECC--CCCHHHHHHHHHHHHhCCCCEEEEec
Confidence 45799999977778999999999999998854322 222 24677777765 4578877766
No 71
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=41.59 E-value=1e+02 Score=24.89 Aligned_cols=66 Identities=17% Similarity=0.142 Sum_probs=35.7
Q ss_pred HHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHhhC---CceeeceeeHhHHHHHHHhCCCCccEEEeCCcch
Q 018224 176 AFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKY---PSIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYG 249 (359)
Q Consensus 176 AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~ey---pdI~~~~~~vD~~~~~Lv~~P~~fdViv~~NlfG 249 (359)
+..+++ ++..+|+.++..- -..+.+++-.+.+ +.+++...-+......+-..++.||+|++...|.
T Consensus 59 ~~~~~~-~~~~~v~~vD~~~-------~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~ 127 (187)
T 2fhp_A 59 AIEAVS-RGMDKSICIEKNF-------AALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPYA 127 (187)
T ss_dssp HHHHHH-TTCSEEEEEESCH-------HHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCGG
T ss_pred HHHHHH-cCCCEEEEEECCH-------HHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEECCCCC
Confidence 344444 3456899998542 2233444433322 2455544433333333444578999999876665
No 72
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=41.46 E-value=71 Score=28.22 Aligned_cols=60 Identities=13% Similarity=0.099 Sum_probs=34.0
Q ss_pred CCcEEEEE-cCCchhhchHHHHHHHHHHHhhCCceeeceee-----Hh---HHHHHHHhCCCCccEEEeCC
Q 018224 185 RKKVTAVH-KANIMKLADGLFLESCREVATKYPSIKYNEII-----VD---NCCMQLVSKPEQFDVMVTPN 246 (359)
Q Consensus 185 ~~~Vt~v~-KaNvl~~tdglf~~~~~eva~eypdI~~~~~~-----vD---~~~~~Lv~~P~~fdViv~~N 246 (359)
++++-++. ..+.. +...-.+-+++..+++|++++.... .+ .++.+|++.+..+|.|+|.|
T Consensus 133 ~~~I~~i~g~~~~~--~~~~R~~Gf~~al~~~~g~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~n 201 (288)
T 1gud_A 133 GGEVAIIEGKAGNA--SGEARRNGATEAFKKASQIKLVASQPADWDRIKALDVATNVLQRNPNIKAIYCAN 201 (288)
T ss_dssp CEEEEEEECSTTCH--HHHHHHHHHHHHHHTCTTEEEEEEEECTTCHHHHHHHHHHHHHHCTTCCEEEESS
T ss_pred CCEEEEEeCCCCCc--hHhHHHHHHHHHHHhCCCcEEEEeecCCccHHHHHHHHHHHHHhCCCceEEEECC
Confidence 57777775 32321 1122234566666678777643321 12 24456666555789999987
No 73
>3lxy_A 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD-DEPE dehydrogenase, metal-binding, NAD, NADP, oxidoreductase, PY biosynthesis; HET: SUC; 1.70A {Yersinia pestis} SCOP: c.77.1.3 PDB: 1ps6_A* 1ptm_A 1ps7_A 1r8k_A
Probab=41.10 E-value=18 Score=34.85 Aligned_cols=21 Identities=24% Similarity=0.657 Sum_probs=17.5
Q ss_pred CcceEEEEcCC--CCcHHHHHHH
Q 018224 28 SPRAVTLIPGD--GIGPLVTNAV 48 (359)
Q Consensus 28 ~~~~I~vi~GD--GIGpEV~~~a 48 (359)
++.+|++-.|| ||||||+-.+
T Consensus 7 ~~~~iaiT~GDpaGIGpEiilka 29 (334)
T 3lxy_A 7 HNNRLVITPGEPAGVGPDLAITL 29 (334)
T ss_dssp CCSEEEEECCCTTSSHHHHHHHH
T ss_pred CCCEEEEeCCCCccchHHHHHHh
Confidence 56799999998 7999997544
No 74
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=40.61 E-value=49 Score=29.02 Aligned_cols=74 Identities=14% Similarity=-0.011 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhcCCCcEEEEEcCCc-hhhchHHHHHHHHHHHhhCCceeecee--eH---hHHHHHHHhCCCCccEEEeC
Q 018224 172 IAKYAFEYAYLNYRKKVTAVHKANI-MKLADGLFLESCREVATKYPSIKYNEI--IV---DNCCMQLVSKPEQFDVMVTP 245 (359)
Q Consensus 172 iar~AFe~A~~r~~~~Vt~v~KaNv-l~~tdglf~~~~~eva~eypdI~~~~~--~v---D~~~~~Lv~~P~~fdViv~~ 245 (359)
..+.|.++-.++|.+++-++.-..- .. +.....+-|++..+++|.+.++.. .- -..+.++++...++|.|+|.
T Consensus 110 ~g~~a~~~L~~~G~~~I~~i~~~~~~~~-~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~ 188 (276)
T 3jy6_A 110 AAKAATTAFRQQGYQHVVVLTSELELSR-TRQERYRGILAAAQDVDVLEVSESSYNHSEVHQRLTQLITQNDQKTVAFAL 188 (276)
T ss_dssp HHHHHHHHHHTTTCCEEEEEEECSTTCH-HHHHHHHHHHTTCSEEEEEEECSSSCCHHHHHHHHHHHHHSSSSCEEEEES
T ss_pred HHHHHHHHHHHcCCCeEEEEecCCCCCc-hHHHHHHHHHHHHHhCCcEEEeccccCCcHHHHHHHHHHhcCCCCcEEEEe
Confidence 4455666666778888888765432 21 223455567776667765443321 11 12233445666789999997
Q ss_pred C
Q 018224 246 N 246 (359)
Q Consensus 246 N 246 (359)
|
T Consensus 189 ~ 189 (276)
T 3jy6_A 189 K 189 (276)
T ss_dssp S
T ss_pred C
Confidence 7
No 75
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=40.48 E-value=85 Score=27.73 Aligned_cols=72 Identities=8% Similarity=-0.039 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHhhCCceeec------eeeH---hHHHHHHHhCCCCccEE
Q 018224 172 IAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYN------EIIV---DNCCMQLVSKPEQFDVM 242 (359)
Q Consensus 172 iar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~eypdI~~~------~~~v---D~~~~~Lv~~P~~fdVi 242 (359)
..+.|.++-.++|.+++-++.-..-. +.....+-|.+..+++. +.++ .... -.++.++++...++|.|
T Consensus 113 ~~~~a~~~L~~~G~~~I~~i~~~~~~--~~~~R~~Gf~~al~~~g-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai 189 (289)
T 3k9c_A 113 GITLAVDHLTELGHRNIAHIDGADAP--GGADRRAGFLAAMDRHG-LSASATVVTGGTTETEGAEGMHTLLEMPTPPTAV 189 (289)
T ss_dssp HHHHHHHHHHHTTCCSEEEECCTTST--THHHHHHHHHHHHHHTT-CGGGEEEECCCSSHHHHHHHHHHHHTSSSCCSEE
T ss_pred HHHHHHHHHHHCCCCcEEEEeCCCCc--cHHHHHHHHHHHHHHCC-CCCCccEEECCCCHHHHHHHHHHHHcCCCCCCEE
Confidence 34455555566788888888654322 23344445555544432 2211 1111 23456777777789999
Q ss_pred EeCC
Q 018224 243 VTPN 246 (359)
Q Consensus 243 v~~N 246 (359)
+|.|
T Consensus 190 ~~~~ 193 (289)
T 3k9c_A 190 VAFN 193 (289)
T ss_dssp EESS
T ss_pred EECC
Confidence 9987
No 76
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=40.28 E-value=53 Score=28.96 Aligned_cols=58 Identities=17% Similarity=0.250 Sum_probs=42.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEecCcccCCcHHHHHHHHhc-----Cceeecc
Q 018224 30 RAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIRKN-----KVCLKGG 91 (359)
Q Consensus 30 ~~I~vi~GDGIGpEV~~~a~~vl~~~~~~ie~~~~~~g~~~~~lp~et~~~~~~~-----da~l~G~ 91 (359)
..|++|-|---=-++++.+.++|+..|++.|.. -++.. ..|++..+-++++ ++++-|+
T Consensus 23 p~V~IimGS~SD~~v~~~a~~~L~~~gI~~e~~--V~SAH--Rtp~~l~~~~~~a~~~g~~ViIa~A 85 (181)
T 4b4k_A 23 SLVGVIMGSTSDWETMKYACDILDELNIPYEKK--VVSAH--RTPDYMFEYAETARERGLKVIIAGA 85 (181)
T ss_dssp CSEEEEESSGGGHHHHHHHHHHHHHTTCCEEEE--ECCTT--TSHHHHHHHHHHTTTTTCCEEEEEE
T ss_pred ccEEEEECCHhHHHHHHHHHHHHHHcCCCeeEE--EEccc--cChHHHHHHHHHHHhcCceEEEEec
Confidence 459999998777889999999999999775543 33322 4688888777653 6777665
No 77
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=39.70 E-value=87 Score=27.48 Aligned_cols=70 Identities=17% Similarity=0.162 Sum_probs=38.6
Q ss_pred HHHHHHHhc-C-CCcEEEEEc-CCchhhchHHHHHHHHHHHhhCCceeeceee-----Hh---HHHHHHHhCCCCccEEE
Q 018224 175 YAFEYAYLN-Y-RKKVTAVHK-ANIMKLADGLFLESCREVATKYPSIKYNEII-----VD---NCCMQLVSKPEQFDVMV 243 (359)
Q Consensus 175 ~AFe~A~~r-~-~~~Vt~v~K-aNvl~~tdglf~~~~~eva~eypdI~~~~~~-----vD---~~~~~Lv~~P~~fdViv 243 (359)
.|.++-.++ | ++++-++.- .+.. +.....+-+++..+++|++++.... .+ ..+.+|++.+.++|.|+
T Consensus 111 ~a~~~L~~~~gg~~~I~~i~g~~~~~--~~~~R~~Gf~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~ 188 (283)
T 2ioy_A 111 MAAEFIAKALKGKGNVVELEGIPGAS--AARDRGKGFDEAIAKYPDIKIVAKQAADFDRSKGLSVMENILQAQPKIDAVF 188 (283)
T ss_dssp HHHHHHHHHTTTCEEEEEEECCTTCH--HHHHHHHHHHHHHTTCTTEEEEEEEECTTCHHHHHHHHHHHHHHCSCCCEEE
T ss_pred HHHHHHHHHcCCCceEEEEECCCCCc--cHHHHHHHHHHHHHhCCCCEEEeeccCCCCHHHHHHHHHHHHHhCCCccEEE
Confidence 344444444 3 677777752 2321 1223334566666778887653221 12 23455665555689999
Q ss_pred eCC
Q 018224 244 TPN 246 (359)
Q Consensus 244 ~~N 246 (359)
|.|
T Consensus 189 ~~n 191 (283)
T 2ioy_A 189 AQN 191 (283)
T ss_dssp ESS
T ss_pred ECC
Confidence 998
No 78
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=39.24 E-value=1.1e+02 Score=26.73 Aligned_cols=65 Identities=6% Similarity=-0.019 Sum_probs=33.9
Q ss_pred CCCCcceEEEEcCC-----CCcHHHHHHHHHHHHHcCCCeeEEEEEecCcccCCcHHHHHHH--HhcCceeeccc
Q 018224 25 GDGSPRAVTLIPGD-----GIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSI--RKNKVCLKGGL 92 (359)
Q Consensus 25 ~~~~~~~I~vi~GD-----GIGpEV~~~a~~vl~~~~~~ie~~~~~~g~~~~~lp~et~~~~--~~~da~l~G~~ 92 (359)
+.+++++|+++-.+ --..++...+.+.++..|..+.+ ++..... .--.+.++.+ ++.|+++..+.
T Consensus 15 ~~~~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~~--~~~~~~~-~~~~~~~~~l~~~~vdgii~~~~ 86 (296)
T 3brq_A 15 SAKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLL--ADGKHSA-EEERQAIQYLLDLRCDAIMIYPR 86 (296)
T ss_dssp ----CCEEEEEECGGGCC--CHHHHHHHHHHHHHHTTCEEEE--ECCTTSH-HHHHHHHHHHHHTTCSEEEEECS
T ss_pred hcCCCceEEEEeCCcccCCchHHHHHHHHHHHHHHCCCEEEE--EeCCCCH-HHHHHHHHHHHhcCCCEEEEecC
Confidence 34567899998433 34567888888888777765543 2222110 0011233333 35787777554
No 79
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=38.94 E-value=2.1e+02 Score=25.35 Aligned_cols=122 Identities=8% Similarity=-0.009 Sum_probs=65.1
Q ss_pred CCcHHHHHHHHHHHHHcCCCeeEEEEEecCcccCCcHHHH-HH--HHhcCceeeccccCCCCCC--cccchHHHHhhcCc
Q 018224 39 GIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVL-DS--IRKNKVCLKGGLKTPVGGG--VSSLNVQLRKELDL 113 (359)
Q Consensus 39 GIGpEV~~~a~~vl~~~~~~ie~~~~~~g~~~~~lp~et~-~~--~~~~da~l~G~~~~p~~~~--~~s~~~~LR~~ldl 113 (359)
.-..+..+...+.++..++++++....-| -|.+.+ +. -+++|.+++|.-+...... ..|....+=+.
T Consensus 47 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~g-----~~~~~i~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~vl~~--- 118 (290)
T 3mt0_A 47 RDHSAALNDLAQELREEGYSVSTNQAWKD-----SLHQTIIAEQQAEGCGLIIKQHFPDNPLKKAILTPDDWKLLRF--- 118 (290)
T ss_dssp SCCHHHHHHHHHHHHHTTCCEEEEEECSS-----SHHHHHHHHHHHHTCSEEEEECCCSCTTSTTSCCHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHhhCCCeEEEEEEeCC-----CHHHHHHHHHHhcCCCEEEEecccCCchhhcccCHHHHHHHhc---
Confidence 34556677777777767777776544222 144444 33 2468899988865321111 11211111111
Q ss_pred EEEEEEeecCCCCCCCcccccEEEEecCCcceEeccceeeeCCEEEEEEe--ecHH---HHHHHHHHHHHHHHhcCCCcE
Q 018224 114 YAALVNCFNLPGLPTRHQNVDIVVIRENTEGEYSGLEHEVVPGVVESLKV--ITKF---CSERIAKYAFEYAYLNYRKKV 188 (359)
Q Consensus 114 yanvRP~~~~pg~~~~~~~iDivivREnteG~Y~g~~~~~~~~va~~~~~--~Tr~---~~eRiar~AFe~A~~r~~~~V 188 (359)
-+.+++++++...- . ...+...+.- .+.. -+++.+++|+++|+..+ .+|
T Consensus 119 -----------------~~~PVlvv~~~~~~---~-----~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~-a~l 172 (290)
T 3mt0_A 119 -----------------APCPVLMTKTARPW---T-----GGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAK-ATL 172 (290)
T ss_dssp -----------------CSSCEEEECCCSCS---T-----TCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTT-CEE
T ss_pred -----------------CCCCEEEecCCCCC---C-----CCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHcC-CeE
Confidence 13557788754321 1 1123333322 1111 17999999999999874 678
Q ss_pred EEEEcC
Q 018224 189 TAVHKA 194 (359)
Q Consensus 189 t~v~Ka 194 (359)
+++|=.
T Consensus 173 ~ll~v~ 178 (290)
T 3mt0_A 173 HVISAH 178 (290)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 888643
No 80
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=38.27 E-value=1.1e+02 Score=26.86 Aligned_cols=60 Identities=10% Similarity=-0.038 Sum_probs=32.0
Q ss_pred CcceEEEEcCC---CCcHHHHHHHHHHHHHcCCCeeEEEEEecCcccCCcH---HHHHHH--HhcCceeeccc
Q 018224 28 SPRAVTLIPGD---GIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQ---QVLDSI--RKNKVCLKGGL 92 (359)
Q Consensus 28 ~~~~I~vi~GD---GIGpEV~~~a~~vl~~~~~~ie~~~~~~g~~~~~lp~---et~~~~--~~~da~l~G~~ 92 (359)
++++|+++.-+ ....++...+.+.++..|..+.+ +.... . -++ +.++.+ ++.|+++..+.
T Consensus 3 ~~~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~g~~~~~--~~~~~-~--~~~~~~~~~~~l~~~~vdgiii~~~ 70 (303)
T 3d02_A 3 AEKTVVNISKVDGMPWFNRMGEGVVQAGKEFNLNASQ--VGPSS-T--DAPQQVKIIEDLIARKVDAITIVPN 70 (303)
T ss_dssp -CEEEEEECSCSSCHHHHHHHHHHHHHHHHTTEEEEE--ECCSS-S--CHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CceEEEEEeccCCChHHHHHHHHHHHHHHHcCCEEEE--ECCCC-C--CHHHHHHHHHHHHHcCCCEEEEecC
Confidence 46789999533 34456777777777766644332 11111 1 122 223333 45788887664
No 81
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=37.57 E-value=66 Score=27.85 Aligned_cols=59 Identities=14% Similarity=0.225 Sum_probs=43.2
Q ss_pred cceEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEecCcccCCcHHHHHHHHh-----cCceeecc
Q 018224 29 PRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIRK-----NKVCLKGG 91 (359)
Q Consensus 29 ~~~I~vi~GDGIGpEV~~~a~~vl~~~~~~ie~~~~~~g~~~~~lp~et~~~~~~-----~da~l~G~ 91 (359)
+.+|++|-|---=-++++++.++|+..|++.|... +|. ...|++..+-.++ +++++-++
T Consensus 3 ~~~V~Iimgs~SD~~v~~~a~~~l~~~gi~~ev~V--~Sa--HR~p~~~~~~~~~a~~~g~~ViIa~A 66 (163)
T 3ors_A 3 AMKVAVIMGSSSDWKIMQESCNMLDYFEIPYEKQV--VSA--HRTPKMMVQFASEARERGINIIIAGA 66 (163)
T ss_dssp CCCEEEEESCGGGHHHHHHHHHHHHHTTCCEEEEE--CCT--TTSHHHHHHHHHHTTTTTCCEEEEEE
T ss_pred CCeEEEEECcHHHHHHHHHHHHHHHHcCCCEEEEE--ECC--cCCHHHHHHHHHHHHhCCCcEEEEEC
Confidence 35799999877778999999999999998854422 222 2478888776653 67777666
No 82
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=36.93 E-value=1.5e+02 Score=25.94 Aligned_cols=175 Identities=14% Similarity=0.125 Sum_probs=85.2
Q ss_pred CCCcceEEEEcCCCCc---HHHHHHHHHHHHHcCCCeeEEEEEecCcccCCcHHHHHHH--HhcCceeeccccCCCCCCc
Q 018224 26 DGSPRAVTLIPGDGIG---PLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSI--RKNKVCLKGGLKTPVGGGV 100 (359)
Q Consensus 26 ~~~~~~I~vi~GDGIG---pEV~~~a~~vl~~~~~~ie~~~~~~g~~~~~lp~et~~~~--~~~da~l~G~~~~p~~~~~ 100 (359)
.+++++|+++--+--. .++...+.+.++..|..+.+ +...... .-..+.++.+ ++.|+++..+....
T Consensus 5 ~~~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~~--~~~~~~~-~~~~~~~~~l~~~~vdgiIi~~~~~~----- 76 (291)
T 3egc_A 5 SKRSNVVGLIVSDIENVFFAEVASGVESEARHKGYSVLL--ANTAEDI-VREREAVGQFFERRVDGLILAPSEGE----- 76 (291)
T ss_dssp --CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEE--EECTTCH-HHHHHHHHHHHHTTCSEEEECCCSSC-----
T ss_pred cCCCcEEEEEECCCcchHHHHHHHHHHHHHHHCCCEEEE--EeCCCCH-HHHHHHHHHHHHCCCCEEEEeCCCCC-----
Confidence 4567899999655433 46667777777776765554 3333210 1122334444 46788887664321
Q ss_pred ccchHHHHhhcCcEEEEEEeecCCCCCCCcccccEEEEecCCcceEeccceeeeCCEEEEEEeecHHHHHHHHHHHHHHH
Q 018224 101 SSLNVQLRKELDLYAALVNCFNLPGLPTRHQNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYA 180 (359)
Q Consensus 101 ~s~~~~LR~~ldlyanvRP~~~~pg~~~~~~~iDivivREnteG~Y~g~~~~~~~~va~~~~~~Tr~~~eRiar~AFe~A 180 (359)
. ..+++..+ .++.+|++-....+ ++. ..+..-... ..+.|.++-
T Consensus 77 -~--~~~~~~~~------------------~~iPvV~~~~~~~~----------~~~-~~V~~D~~~----~g~~a~~~L 120 (291)
T 3egc_A 77 -H--DYLRTELP------------------KTFPIVAVNRELRI----------PGC-GAVLSENVR----GARTAVEYL 120 (291)
T ss_dssp -C--HHHHHSSC------------------TTSCEEEESSCCCC----------TTC-EEEEECHHH----HHHHHHHHH
T ss_pred -h--HHHHHhhc------------------cCCCEEEEecccCC----------CCC-CEEEECcHH----HHHHHHHHH
Confidence 0 11111100 13445555322211 011 122222233 344555565
Q ss_pred HhcCCCcEEEEEcCCchhhchHHHHHHHHHHHhhCCceeec----------eeeHhHHHHHHHhCCCCccEEEeCC
Q 018224 181 YLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYN----------EIIVDNCCMQLVSKPEQFDVMVTPN 246 (359)
Q Consensus 181 ~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~eypdI~~~----------~~~vD~~~~~Lv~~P~~fdViv~~N 246 (359)
.++|.+++.++.-..-.. +.....+-+.+..+++. ++++ ..-.-.++.++++...++|.|+|.|
T Consensus 121 ~~~G~~~i~~i~~~~~~~-~~~~R~~gf~~~l~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~ 194 (291)
T 3egc_A 121 IARGHTRIGAIVGSAGLM-TSRERLKGFRAAMSAAG-LPVRQEWIAAGGVRADNGRDGAIKVLTGADRPTALLTSS 194 (291)
T ss_dssp HHTTCCSEEEECSCTTSH-HHHHHHHHHHHHHHHTT-CCCCGGGEEC------CCHHHHHHHHTC-CCCSEEEESS
T ss_pred HHcCCCEEEEEeCCCCCc-CHHHHHHHHHHHHHHcC-CCCCHHHeEeCCCChhHHHHHHHHHHhCCCCCcEEEECC
Confidence 666888888886443221 23334445555555442 2211 1112245677887777899999987
No 83
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=36.92 E-value=1.4e+02 Score=26.59 Aligned_cols=72 Identities=8% Similarity=-0.064 Sum_probs=39.1
Q ss_pred HHHHHHHHhc--CCCcEEEEEcCCchhhchHHHHHHHHHHHhhCCceeeceee-----Hh---HHHHHHHhCCCCccEEE
Q 018224 174 KYAFEYAYLN--YRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEII-----VD---NCCMQLVSKPEQFDVMV 243 (359)
Q Consensus 174 r~AFe~A~~r--~~~~Vt~v~KaNvl~~tdglf~~~~~eva~eypdI~~~~~~-----vD---~~~~~Lv~~P~~fdViv 243 (359)
+.|.++..++ |+++|.++.-..-.. +.....+-|++..++ +++++.... .+ ..+.++++...++|.|+
T Consensus 110 ~~a~~~L~~~~~G~~~I~~i~~~~~~~-~~~~R~~gf~~~l~~-~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~ 187 (313)
T 2h3h_A 110 YTAGLIMKELLGGKGKVVIGTGSLTAM-NSLQRIQGFKDAIKD-SEIEIVDILNDEEDGARAVSLAEAALNAHPDLDAFF 187 (313)
T ss_dssp HHHHHHHHHHHTSCSEEEEEESCSSCH-HHHHHHHHHHHHHTT-SSCEEEEEEECSSCHHHHHHHHHHHHHHCTTCCEEE
T ss_pred HHHHHHHHHHcCCCCEEEEEECCCCCc-cHHHHHHHHHHHhcC-CCCEEEEeecCCCCHHHHHHHHHHHHHHCcCceEEE
Confidence 3344444444 678888876432111 223344556666565 666653321 11 34456665444689999
Q ss_pred eCCc
Q 018224 244 TPNL 247 (359)
Q Consensus 244 ~~Nl 247 (359)
|.|-
T Consensus 188 ~~~d 191 (313)
T 2h3h_A 188 GVYA 191 (313)
T ss_dssp ECST
T ss_pred EcCC
Confidence 9873
No 84
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=36.51 E-value=1.7e+02 Score=26.17 Aligned_cols=63 Identities=8% Similarity=0.192 Sum_probs=35.1
Q ss_pred cCCCcEEEEEcCCchhhchHHHHHHHHHHH-hhCCceeeceee-----Hh---HHHHHHHhCCCCccEEEeCC
Q 018224 183 NYRKKVTAVHKANIMKLADGLFLESCREVA-TKYPSIKYNEII-----VD---NCCMQLVSKPEQFDVMVTPN 246 (359)
Q Consensus 183 r~~~~Vt~v~KaNvl~~tdglf~~~~~eva-~eypdI~~~~~~-----vD---~~~~~Lv~~P~~fdViv~~N 246 (359)
+|++++.++.=..-.. ....|.+-+.+.. +.+|++++.... .+ ..+.+|++...++|.|+|.|
T Consensus 126 ~g~~~i~~i~g~~~~~-~~~~r~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~aI~~~n 197 (316)
T 1tjy_A 126 KEKAKVAFFYSSPTVT-DQNQWVKEAKAKISQEHPGWEIVTTQFGYNDATKSLQTAEGIIKAYPDLDAIIAPD 197 (316)
T ss_dssp SSSEEEEEEESCSSCH-HHHHHHHHHHHHHHHHCTTEEEEEEEECTTCHHHHHHHHHHHHHHCSSCCEEEECS
T ss_pred CCCCEEEEEEcCCCCh-hHHHHHHHHHHHHHhhCCCcEEEEeccCCCCHHHHHHHHHHHHHhCCCCCEEEECC
Confidence 4667887775321111 2345566666664 457887654321 12 23345554434689999988
No 85
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=36.45 E-value=1.3e+02 Score=23.10 Aligned_cols=28 Identities=21% Similarity=0.205 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHH-HhcCCCcEEEEEcCC
Q 018224 167 FCSERIAKYAFEYA-YLNYRKKVTAVHKAN 195 (359)
Q Consensus 167 ~~~eRiar~AFe~A-~~r~~~~Vt~v~KaN 195 (359)
+.+++.+++|.++| ++. ..+|+++|=..
T Consensus 12 ~~s~~al~~a~~la~~~~-~a~l~ll~v~~ 40 (138)
T 3idf_A 12 EACERAAQYILDMFGKDA-DCTLTLIHVKP 40 (138)
T ss_dssp HHHHHHHHHHHHHHTTCT-TEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHhccCC-CCEEEEEEEec
Confidence 45889999999999 665 46788876433
No 86
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=35.81 E-value=1.1e+02 Score=27.61 Aligned_cols=185 Identities=9% Similarity=0.001 Sum_probs=84.3
Q ss_pred ccccCCCCCCCCcceEEEEcCC-----CCcHHHHHHHHHHHHHcCCCeeEEEEEecCcccCCcHHHHHHH--HhcCceee
Q 018224 17 SVTYMPRPGDGSPRAVTLIPGD-----GIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSI--RKNKVCLK 89 (359)
Q Consensus 17 ~~~~~~~~~~~~~~~I~vi~GD-----GIGpEV~~~a~~vl~~~~~~ie~~~~~~g~~~~~lp~et~~~~--~~~da~l~ 89 (359)
|+......+.+++++|+++-.| ---.++...+.+.++..|..+.+. ...... ....+.++.+ ++.|+++.
T Consensus 49 pn~~a~~l~~~~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~~~-~~~~~~~~~l~~~~vdgiIi 125 (338)
T 3dbi_A 49 PNLLARNLSAKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLA--DGKHSA-EEERQAIQYLLDLRCDAIMI 125 (338)
T ss_dssp -----------CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCEEEEE--ECTTSH-HHHHHHHHHHHHTTCSEEEE
T ss_pred cCHHHHHhhhCCCCEEEEEecCCcccChhHHHHHHHHHHHHHHCCCEEEEE--eCCCCh-HHHHHHHHHHHhCCCCEEEE
Confidence 4433333345677899999555 233567777777777777665543 222110 0112233433 36788887
Q ss_pred ccccCCCCCCcccchHHHHhhcCcEEEEEEeecCCCCCCCcccccEEEEecCCcceEeccceeeeCCEEEEEEeecHHHH
Q 018224 90 GGLKTPVGGGVSSLNVQLRKELDLYAALVNCFNLPGLPTRHQNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCS 169 (359)
Q Consensus 90 G~~~~p~~~~~~s~~~~LR~~ldlyanvRP~~~~pg~~~~~~~iDivivREnteG~Y~g~~~~~~~~va~~~~~~Tr~~~ 169 (359)
-|...+ ......+.+..+ +.+|++=...++. ... .+..-.+
T Consensus 126 ~~~~~~-----~~~~~~~~~~~~--------------------iPvV~~~~~~~~~--~~~---------~V~~D~~--- 166 (338)
T 3dbi_A 126 YPRFLS-----VDEIDDIIDAHS--------------------QPIMVLNRRLRKN--SSH---------SVWCDHK--- 166 (338)
T ss_dssp CCSSSC-----HHHHHHHHHHCS--------------------SCEEEESSCCSSS--GGG---------EECBCHH---
T ss_pred eCCCCC-----hHHHHHHHHcCC--------------------CCEEEEcCCCCCC--CCC---------EEEEChH---
Confidence 664221 011222222222 2233331111110 000 0111112
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHhhCCceeece-------eeH---hHHHHHHHhCCCCc
Q 018224 170 ERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNE-------IIV---DNCCMQLVSKPEQF 239 (359)
Q Consensus 170 eRiar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~eypdI~~~~-------~~v---D~~~~~Lv~~P~~f 239 (359)
...+.|.++-.++|++++-++.-..-.. +.....+-|.+..+++. ++++. ... -.++.+|++...++
T Consensus 167 -~~~~~a~~~L~~~G~~~I~~i~~~~~~~-~~~~R~~Gf~~al~~~g-~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 243 (338)
T 3dbi_A 167 -QTSFNAVAELINAGHQEIAFLTGSMDSP-TSIERLAGYKDALAQHG-IALNEKLIANGKWTPASGAEGVEMLLERGAKF 243 (338)
T ss_dssp -HHHHHHHHHHHHTTCCSEEEECCCTTCH-HHHHHHHHHHHHHHHTT-CCCCGGGEECCCSSHHHHHHHHHHHHHTTCCC
T ss_pred -HHHHHHHHHHHHCCCCEEEEEeCCCCCc-cHHHHHHHHHHHHHHCC-CCCCcceEEeCCCCHHHHHHHHHHHHcCCCCC
Confidence 2344556666667888988885432111 22333444555544442 22211 111 24566777777789
Q ss_pred cEEEeCC
Q 018224 240 DVMVTPN 246 (359)
Q Consensus 240 dViv~~N 246 (359)
|.|+|.|
T Consensus 244 ~ai~~~n 250 (338)
T 3dbi_A 244 SALVASN 250 (338)
T ss_dssp SEEEESS
T ss_pred eEEEECC
Confidence 9999988
No 87
>2hi1_A 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridoxal phosphate biosynthesis, structural GENO PSI-2, protein structure initiative; 2.30A {Salmonella typhimurium}
Probab=35.75 E-value=21 Score=34.43 Aligned_cols=17 Identities=41% Similarity=0.727 Sum_probs=14.9
Q ss_pred EEEEcCC--CCcHHHHHHH
Q 018224 32 VTLIPGD--GIGPLVTNAV 48 (359)
Q Consensus 32 I~vi~GD--GIGpEV~~~a 48 (359)
|++-.|| ||||||+-.+
T Consensus 9 iaIT~GDpaGIGpEii~ka 27 (330)
T 2hi1_A 9 VAITMGDPAGIGPEIIVKA 27 (330)
T ss_dssp EEEECCCTTTTHHHHHHHH
T ss_pred EEEcCCCCcchhHHHHHHH
Confidence 9999998 8999998755
No 88
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=35.62 E-value=1.4e+02 Score=26.23 Aligned_cols=73 Identities=12% Similarity=0.072 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHhhCCceeecee---e-------HhHHHHHHHhCCCCccE
Q 018224 172 IAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEI---I-------VDNCCMQLVSKPEQFDV 241 (359)
Q Consensus 172 iar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~eypdI~~~~~---~-------vD~~~~~Lv~~P~~fdV 241 (359)
..+.|.++-.++|.+++-++.-..-.. +.....+-+.+..+++. +.++.. . .-.++.++++....+|.
T Consensus 114 ~g~~a~~~L~~~G~~~I~~i~~~~~~~-~~~~R~~gf~~~l~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a 191 (288)
T 3gv0_A 114 YAYEAVERLAQCGRKRIAVIVPPSRFS-FHDHARKGFNRGIRDFG-LTEFPIDAVTIETPLEKIRDFGQRLMQSSDRPDG 191 (288)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCCTTSH-HHHHHHHHHHHHHHHTT-CEECCCCSCCTTSCHHHHHHHHHHHTTSSSCCSE
T ss_pred HHHHHHHHHHHCCCCeEEEEcCCcccc-hHHHHHHHHHHHHHHcC-CCcchhheeccccchHHHHHHHHHHHhCCCCCcE
Confidence 445566666667888988885332111 12233345555544442 222211 1 11456677777778999
Q ss_pred EEeCC
Q 018224 242 MVTPN 246 (359)
Q Consensus 242 iv~~N 246 (359)
|+|.|
T Consensus 192 i~~~~ 196 (288)
T 3gv0_A 192 IVSIS 196 (288)
T ss_dssp EEESC
T ss_pred EEEcC
Confidence 99988
No 89
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=35.42 E-value=73 Score=27.67 Aligned_cols=58 Identities=19% Similarity=0.237 Sum_probs=42.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEecCcccCCcHHHHHHHHh-----cCceeecc
Q 018224 30 RAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIRK-----NKVCLKGG 91 (359)
Q Consensus 30 ~~I~vi~GDGIGpEV~~~a~~vl~~~~~~ie~~~~~~g~~~~~lp~et~~~~~~-----~da~l~G~ 91 (359)
.+|++|-|---=-++++++.++|+..|++.|... +|. ...|++.++-+++ +++++-++
T Consensus 6 p~V~IimgS~SD~~v~~~a~~~l~~~gi~~ev~V--~Sa--HRtp~~l~~~~~~~~~~g~~ViIa~A 68 (166)
T 3oow_A 6 VQVGVIMGSKSDWSTMKECCDILDNLGIGYECEV--VSA--HRTPDKMFDYAETAKERGLKVIIAGA 68 (166)
T ss_dssp EEEEEEESSGGGHHHHHHHHHHHHHTTCEEEEEE--CCT--TTCHHHHHHHHHHTTTTTCCEEEEEE
T ss_pred CeEEEEECcHHhHHHHHHHHHHHHHcCCCEEEEE--EcC--cCCHHHHHHHHHHHHhCCCcEEEEEC
Confidence 4799999977778999999999999998544322 222 2478888887754 47776655
No 90
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=34.95 E-value=1.3e+02 Score=26.26 Aligned_cols=72 Identities=14% Similarity=-0.063 Sum_probs=38.0
Q ss_pred HHHHHHHHHhc-C-CCcEEEEEcC-CchhhchHHHHHHHHHHHhhCCceeeceee----Hh---HHHHHHHhCCCCccEE
Q 018224 173 AKYAFEYAYLN-Y-RKKVTAVHKA-NIMKLADGLFLESCREVATKYPSIKYNEII----VD---NCCMQLVSKPEQFDVM 242 (359)
Q Consensus 173 ar~AFe~A~~r-~-~~~Vt~v~Ka-Nvl~~tdglf~~~~~eva~eypdI~~~~~~----vD---~~~~~Lv~~P~~fdVi 242 (359)
.+.|.++..++ | +++|-++.-. +.. ......+-+.+..++++....+... .+ .++.++++....+|.|
T Consensus 117 g~~~~~~L~~~~G~~~~i~~i~~~~~~~--~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai 194 (289)
T 3brs_A 117 GIRIGAVTKNLVRKSGKIGVISFVKNSK--TAMDREEGLKIGLSDDSNKIEAIYYCDSNYDKAYDGTVELLTKYPDISVM 194 (289)
T ss_dssp HHHHHHHHHHHTSSSCEEEEEESCTTSH--HHHHHHHHHHHHHGGGGGGEEEEEECTTCHHHHHHHHHHHHHHCTTEEEE
T ss_pred HHHHHHHHHHHcCCCceEEEEECCCCCc--cHHHHHHHHHHHHHhCCCcEEeeecCCCCHHHHHHHHHHHHHhCCCceEE
Confidence 34444555554 5 7788887633 221 1233345566666666542111111 12 2345666655568999
Q ss_pred EeCC
Q 018224 243 VTPN 246 (359)
Q Consensus 243 v~~N 246 (359)
+|.|
T Consensus 195 ~~~~ 198 (289)
T 3brs_A 195 VGLN 198 (289)
T ss_dssp EESS
T ss_pred EECC
Confidence 9987
No 91
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=34.94 E-value=2.2e+02 Score=24.60 Aligned_cols=73 Identities=10% Similarity=0.030 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHhhCCceeece-------e---eHhHHHHHHHhCCCCccE
Q 018224 172 IAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNE-------I---IVDNCCMQLVSKPEQFDV 241 (359)
Q Consensus 172 iar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~eypdI~~~~-------~---~vD~~~~~Lv~~P~~fdV 241 (359)
..+.|.++-.++|.+++.++.-..-.. +.....+-|.+..+++. +.++. . ..-..+.++++....+|.
T Consensus 118 ~g~~a~~~L~~~G~~~i~~i~~~~~~~-~~~~R~~gf~~~l~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a 195 (292)
T 3k4h_A 118 AAREVAEYLISLGHKQIAFIGGGSDLL-VTRDRLAGMSDALKLAD-IVLPKEYILHFDFSRESGQQAVEELMGLQQPPTA 195 (292)
T ss_dssp HHHHHHHHHHHTTCCCEEEEESCTTBH-HHHHHHHHHHHHHHHTT-CCCCGGGEEECCSSHHHHHHHHHHHHTSSSCCSE
T ss_pred HHHHHHHHHHHCCCceEEEEeCcccch-hHHHHHHHHHHHHHHcC-CCCChheEEecCCCHHHHHHHHHHHHcCCCCCcE
Confidence 344555555666888888886432221 12233344555544431 22111 1 112345677777778999
Q ss_pred EEeCC
Q 018224 242 MVTPN 246 (359)
Q Consensus 242 iv~~N 246 (359)
|+|.|
T Consensus 196 i~~~~ 200 (292)
T 3k4h_A 196 IMATD 200 (292)
T ss_dssp EEESS
T ss_pred EEEcC
Confidence 99987
No 92
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=34.15 E-value=2e+02 Score=24.93 Aligned_cols=59 Identities=2% Similarity=-0.054 Sum_probs=33.9
Q ss_pred CCCcceEEEEcC---CCCcHHHHHHHHHHHHHcCCCeeEEEEEecCcccCCcHHHHHHHHhcCceeeccc
Q 018224 26 DGSPRAVTLIPG---DGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIRKNKVCLKGGL 92 (359)
Q Consensus 26 ~~~~~~I~vi~G---DGIGpEV~~~a~~vl~~~~~~ie~~~~~~g~~~~~lp~et~~~~~~~da~l~G~~ 92 (359)
.+++++|+++-- +.--.+++..+.+.++..|..+.+ +......+... + + +.|+++..+.
T Consensus 5 ~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~--~~~~~~~~~~~-~----~-~vdgiI~~~~ 66 (277)
T 3cs3_A 5 RRQTNIIGVYLADYGGSFYGELLEGIKKGLALFDYEMIV--CSGKKSHLFIP-E----K-MVDGAIILDW 66 (277)
T ss_dssp CCCCCEEEEEECSSCTTTHHHHHHHHHHHHHTTTCEEEE--EESTTTTTCCC-T----T-TCSEEEEECT
T ss_pred ccCCcEEEEEecCCCChhHHHHHHHHHHHHHHCCCeEEE--EeCCCCHHHHh-h----c-cccEEEEecC
Confidence 446789999943 344567777777777777765543 33322211110 0 1 7888877654
No 93
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=34.01 E-value=54 Score=25.53 Aligned_cols=26 Identities=19% Similarity=0.093 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEcCC
Q 018224 169 SERIAKYAFEYAYLNYRKKVTAVHKAN 195 (359)
Q Consensus 169 ~eRiar~AFe~A~~r~~~~Vt~v~KaN 195 (359)
+++.+++|.++|++.+ .+|+++|=..
T Consensus 16 s~~al~~a~~la~~~~-a~l~ll~v~~ 41 (143)
T 3fdx_A 16 TERIISHVESEARIDD-AEVHFLTVIP 41 (143)
T ss_dssp CTTHHHHHHHHHHHHT-CEEEEEEEEC
T ss_pred HHHHHHHHHHHHHhcC-CeEEEEEEec
Confidence 5678899999998864 6788877433
No 94
>3quf_A Extracellular solute-binding protein, family 1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Bifidobacterium longum subsp}
Probab=34.01 E-value=96 Score=28.89 Aligned_cols=57 Identities=12% Similarity=0.087 Sum_probs=39.6
Q ss_pred CCcEEEEEcCCchhhchHHHHHHHHHHHhhCCceeeceeeH---hHHHHHH---HhCCCCccEEEeCC
Q 018224 185 RKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIV---DNCCMQL---VSKPEQFDVMVTPN 246 (359)
Q Consensus 185 ~~~Vt~v~KaNvl~~tdglf~~~~~eva~eypdI~~~~~~v---D~~~~~L---v~~P~~fdViv~~N 246 (359)
+..|++.+-.+ +..+.+++++..++||+|+++...+ |....+| +..-..+||+...+
T Consensus 29 ~~~l~~~~~~~-----~~~~~~~~~~f~~~~p~i~V~~~~~~~~~~~~~kl~~~~~sg~~pDv~~~~~ 91 (414)
T 3quf_A 29 KTKISFYSYFK-----DNQIGEVVKGFEKKNPDITLDVQYGQDPAQYISTLQTRLAGGKPPTIFNLTM 91 (414)
T ss_dssp CEEEEEEESSC-----HHHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHHHHSSSCCSEEEECT
T ss_pred CEEEEEEecCC-----chHHHHHHHHHHHHCcCeEEEEEeCCChHHHHHHHHHHHhCCCCCCEEEECC
Confidence 44566665322 3578889999999999999998875 4444444 34456889988765
No 95
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=33.22 E-value=2e+02 Score=25.00 Aligned_cols=65 Identities=3% Similarity=-0.096 Sum_probs=39.7
Q ss_pred CCCcceEEEEc-C---CCCcHHHHHHHHHHHHHc-CCCeeEEEEEecCcccCCcH---HHHHHH--HhcCceeecccc
Q 018224 26 DGSPRAVTLIP-G---DGIGPLVTNAVEQVMEAM-HAPIYFEKYEVHGDMKRVPQ---QVLDSI--RKNKVCLKGGLK 93 (359)
Q Consensus 26 ~~~~~~I~vi~-G---DGIGpEV~~~a~~vl~~~-~~~ie~~~~~~g~~~~~lp~---et~~~~--~~~da~l~G~~~ 93 (359)
.+++++|+++- . +..-.++...+.+.++.. |..+.+........ -++ +.++.+ ++.|+++.-+..
T Consensus 5 ~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~g~~~~~~~~~~~~~---~~~~~~~~i~~l~~~~vdgiii~~~~ 79 (304)
T 3gbv_A 5 SNKKYTFACLLPKHLEGEYWTDVQKGIREAVTTYSDFNISANITHYDPY---DYNSFVATSQAVIEEQPDGVMFAPTV 79 (304)
T ss_dssp --CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHTGGGCEEEEEEEECSS---CHHHHHHHHHHHHTTCCSEEEECCSS
T ss_pred cCCcceEEEEecCCCCchHHHHHHHHHHHHHHHHHhCCeEEEEEcCCCC---CHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 44678999873 3 335577888888888887 77777665543321 122 233443 357888877653
No 96
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=32.66 E-value=1.5e+02 Score=25.98 Aligned_cols=64 Identities=9% Similarity=0.002 Sum_probs=33.9
Q ss_pred CCCcceEEEEcCCC---CcHHHHHHHHHHHHHcCCCeeEEEEEecCcccCCcHH---HHHHH--HhcCceeeccc
Q 018224 26 DGSPRAVTLIPGDG---IGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQ---VLDSI--RKNKVCLKGGL 92 (359)
Q Consensus 26 ~~~~~~I~vi~GDG---IGpEV~~~a~~vl~~~~~~ie~~~~~~g~~~~~lp~e---t~~~~--~~~da~l~G~~ 92 (359)
.+++++|+++--+- --.++...+.+.++..|..+.+ +....+. .-..+ .++.+ ++.|+++..+.
T Consensus 5 ~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~--~~~~~~~-~~~~~~~~~~~~l~~~~vdgiIi~~~ 76 (290)
T 2rgy_A 5 TQQLGIIGLFVPTFFGSYYGTILKQTDLELRAVHRHVVV--ATGCGES-TPREQALEAVRFLIGRDCDGVVVISH 76 (290)
T ss_dssp ---CCEEEEECSCSCSHHHHHHHHHHHHHHHHTTCEEEE--ECCCSSS-CHHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred cCCCCeEEEEeCCCCCchHHHHHHHHHHHHHHCCCEEEE--EeCCCch-hhhhhHHHHHHHHHhcCccEEEEecC
Confidence 34678999995442 3356777777777777765543 2222111 11122 44444 35788887664
No 97
>3k01_A Acarbose/maltose binding protein GACH; ABC transporter, acarbose-binding protein, transport protein; 1.35A {Streptomyces glaucescens} PDB: 3jzj_A* 3k00_A* 3k02_A*
Probab=32.50 E-value=53 Score=30.77 Aligned_cols=59 Identities=15% Similarity=0.156 Sum_probs=41.7
Q ss_pred CCcEEEEEcCCchhhchHHHHHHHHHHHhhCCceeeceeeH--hHHHHHH---HhCCC-CccEEEeC
Q 018224 185 RKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIV--DNCCMQL---VSKPE-QFDVMVTP 245 (359)
Q Consensus 185 ~~~Vt~v~KaNvl~~tdglf~~~~~eva~eypdI~~~~~~v--D~~~~~L---v~~P~-~fdViv~~ 245 (359)
..+||+-+-.+ ......+.+++++..++||+|+++...+ |....+| +.... .+||+...
T Consensus 27 ~~~l~~w~~~~--~~~~~~~~~~~~~f~~~~pgi~V~~~~~~~~~~~~kl~~~~~sg~~~pDv~~~~ 91 (412)
T 3k01_A 27 SGTVTFWDTSN--EAEKATYQALAEGFEKEHPKVDVKYVNVPFGEANAKFKNAAGGNSGAPDVMRTE 91 (412)
T ss_dssp CEEEEEEECCC--TTTHHHHHHHHHTHHHHCTTEEEEEEECCHHHHHHHHHHHHHTTSSCCSEEEEE
T ss_pred CcEEEEecCCC--CcchHHHHHHHHHHHHHCcCeEEEEEecChHHHHHHHHHHHhcCCCCCCEEEec
Confidence 45788888666 2235678889999999999999988876 3333333 34555 69998864
No 98
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=32.43 E-value=1.8e+02 Score=25.50 Aligned_cols=64 Identities=8% Similarity=-0.010 Sum_probs=38.4
Q ss_pred CCCcceEEEEcC-------CCCcHHHHHHHHHHHHHcCCCeeEEEEEecCcccCCcHHHHHHHH--hcCceeecccc
Q 018224 26 DGSPRAVTLIPG-------DGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIR--KNKVCLKGGLK 93 (359)
Q Consensus 26 ~~~~~~I~vi~G-------DGIGpEV~~~a~~vl~~~~~~ie~~~~~~g~~~~~lp~et~~~~~--~~da~l~G~~~ 93 (359)
.+++++|+++-- +-.-.+++..+.+.++..|..+.+...+ .. .-..+.++.+. +.|+++..+..
T Consensus 3 ~~~s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~--~~--~~~~~~~~~l~~~~vdGiIi~~~~ 75 (294)
T 3qk7_A 3 LGRTDAIALAYPSRPRVLNNSTFLEMISWIGIELGKRGLDLLLIPDE--PG--EKYQSLIHLVETRRVDALIVAHTQ 75 (294)
T ss_dssp --CCCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHTTCEEEEEEEC--TT--CCCHHHHHHHHHTCCSEEEECSCC
T ss_pred CCccceEEEEecCCCccccChhHHHHHHHHHHHHHHCCCEEEEEeCC--Ch--hhHHHHHHHHHcCCCCEEEEeCCC
Confidence 356788998843 2234567777777777778776664432 11 22444555553 68888887653
No 99
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=32.31 E-value=2.2e+02 Score=24.59 Aligned_cols=64 Identities=9% Similarity=0.041 Sum_probs=32.5
Q ss_pred CCCcceEEEEcCCC---CcHHHHHHHHHHHHHcCCCeeEEEEEecCcccCCcHHHHHHH--HhcCceeeccc
Q 018224 26 DGSPRAVTLIPGDG---IGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSI--RKNKVCLKGGL 92 (359)
Q Consensus 26 ~~~~~~I~vi~GDG---IGpEV~~~a~~vl~~~~~~ie~~~~~~g~~~~~lp~et~~~~--~~~da~l~G~~ 92 (359)
.+++++|+++-.+- -..++...+.+.++..|..+.+ .+...+. .--.+.++.+ ++.|+++..+.
T Consensus 4 ~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~--~~~~~~~-~~~~~~~~~l~~~~vdgii~~~~ 72 (289)
T 1dbq_A 4 VNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLIL--GNAWNNL-EKQRAYLSMMAQKRVDGLLVMCS 72 (289)
T ss_dssp ----CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCEEEE--EECTTCH-HHHHHHHHHHHHTTCSEEEEECS
T ss_pred CCCCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEE--EcCCCCh-HHHHHHHHHHHhCCCCEEEEEec
Confidence 34678899985432 3356667777777777766554 3332210 0011223333 35788777554
No 100
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=32.04 E-value=1.5e+02 Score=25.90 Aligned_cols=63 Identities=8% Similarity=-0.078 Sum_probs=36.7
Q ss_pred CCcceEEEEcCC-------CCcHHHHHHHHHHHHHcCCCeeEEEEEecCcccCCcHHHHHHH--HhcCceeeccc
Q 018224 27 GSPRAVTLIPGD-------GIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSI--RKNKVCLKGGL 92 (359)
Q Consensus 27 ~~~~~I~vi~GD-------GIGpEV~~~a~~vl~~~~~~ie~~~~~~g~~~~~lp~et~~~~--~~~da~l~G~~ 92 (359)
+++++|+++--+ .--.++...+.+.++..|..+.+ +...... .-..+.++.+ ++.|+++..+.
T Consensus 2 ~~s~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~--~~~~~~~-~~~~~~~~~l~~~~vdgiIi~~~ 73 (287)
T 3bbl_A 2 SLSFMIGYSWTQTEPGQVNHILDQFLSSMVREAGAVNYFVLP--FPFSEDR-SQIDIYRDLIRSGNVDGFVLSSI 73 (287)
T ss_dssp -CCCEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHTTCEEEE--CCCCSST-TCCHHHHHHHHTTCCSEEEECSC
T ss_pred CceeEEEEEecccccccCChhHHHHHHHHHHHHHHcCCEEEE--EeCCCch-HHHHHHHHHHHcCCCCEEEEeec
Confidence 356789988433 34567888888888887866544 2221111 1233445555 35788887664
No 101
>3i3v_A Probable secreted solute-binding lipoprotein; transporter, PSI-II, structural genomics, protein structure initiative; 2.30A {Streptomyces coelicolor}
Probab=31.70 E-value=1.1e+02 Score=28.28 Aligned_cols=62 Identities=10% Similarity=0.143 Sum_probs=39.7
Q ss_pred CCCcEEEEEcCCchhhchHHHHHHHHHHHhhCCceeeceeeH--h--HHHHHHHhCCCCccEEEeC
Q 018224 184 YRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIV--D--NCCMQLVSKPEQFDVMVTP 245 (359)
Q Consensus 184 ~~~~Vt~v~KaNvl~~tdglf~~~~~eva~eypdI~~~~~~v--D--~~~~~Lv~~P~~fdViv~~ 245 (359)
++.+||+.+-..--......+.+++++..++||+|+++...+ | .-....+..-...||+...
T Consensus 6 ~~~tl~~~~~~~~~~~~~~~~~~~~~~f~~~~p~i~V~~~~~~~~~~~kl~~~~~sg~~pDv~~~~ 71 (405)
T 3i3v_A 6 DPDTLVVHTQLGTTAPGSPTYLAAVDRFREENPGVKIKNLVNGDDLAQVYETSRLARKEADVVMVN 71 (405)
T ss_dssp -CCSEEEEESCSSSSTTHHHHHHHHHHHHHHSTTCCEEEEECSTTHHHHHHHHHHTTCCCSEEEEC
T ss_pred CCcEEEEEeecCCCchhhHHHHHHHHHHHHHCCCcEEEEEECcHHHHHHHHHHHHCCCCCcEEEec
Confidence 356788876432111124677889999989999998888766 2 2223334445578998884
No 102
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=31.46 E-value=1.4e+02 Score=26.31 Aligned_cols=73 Identities=12% Similarity=0.054 Sum_probs=40.7
Q ss_pred HHHHHHHHHhc--CCCcEEEEEcCCchhhchHHHHHHHHHHH-hhCCceeeceee-----H---hHHHHHHHhCCCCccE
Q 018224 173 AKYAFEYAYLN--YRKKVTAVHKANIMKLADGLFLESCREVA-TKYPSIKYNEII-----V---DNCCMQLVSKPEQFDV 241 (359)
Q Consensus 173 ar~AFe~A~~r--~~~~Vt~v~KaNvl~~tdglf~~~~~eva-~eypdI~~~~~~-----v---D~~~~~Lv~~P~~fdV 241 (359)
.+.|.++..++ |++++-++.-... .+.....+-+.+.. +.+++++..... . -.++.++++...++|.
T Consensus 113 g~~~~~~l~~~~~g~~~i~~i~~~~~--~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a 190 (305)
T 3g1w_A 113 GMNAAYKMAELLDGEGEVAVITLPNQ--LNHQERTTGFKETLEAEFPAIEVIAVEDGRGDSLHSRRVAHQLLEDYPNLAG 190 (305)
T ss_dssp HHHHHHHHHHHTTTCEEEEEEECTTC--HHHHHHHHHHHHHHHHHCTTEEEEEEEECTTCHHHHHHHHHHHHHHCTTEEE
T ss_pred HHHHHHHHHHHhCCCcEEEEEeCCCc--ccHHHHHHHHHHHHHhhCCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCceE
Confidence 34455555555 7788888874432 12333344555553 346766544321 1 1235556655557899
Q ss_pred EEeCCc
Q 018224 242 MVTPNL 247 (359)
Q Consensus 242 iv~~Nl 247 (359)
|+|.|=
T Consensus 191 i~~~~d 196 (305)
T 3g1w_A 191 IFATEA 196 (305)
T ss_dssp EEESSH
T ss_pred EEECCC
Confidence 999874
No 103
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=31.45 E-value=1.6e+02 Score=26.89 Aligned_cols=65 Identities=9% Similarity=0.009 Sum_probs=32.4
Q ss_pred CCCCcceEEEEcCCCC---cHHHHHHHHHHHHHcCCCeeEEEEEecCcccCCcHHHHHHH--HhcCceeeccc
Q 018224 25 GDGSPRAVTLIPGDGI---GPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSI--RKNKVCLKGGL 92 (359)
Q Consensus 25 ~~~~~~~I~vi~GDGI---GpEV~~~a~~vl~~~~~~ie~~~~~~g~~~~~lp~et~~~~--~~~da~l~G~~ 92 (359)
+.+++++|+++--+-- -.++.....+.++..|..+.+. ...... .-..+.++.+ ++.|+++..+.
T Consensus 66 ~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~~~-~~~~~~~~~l~~~~vdGiI~~~~ 135 (355)
T 3e3m_A 66 TTKRSGFVGLLLPSLNNLHFAQTAQSLTDVLEQGGLQLLLG--YTAYSP-EREEQLVETMLRRRPEAMVLSYD 135 (355)
T ss_dssp -----CEEEEEESCSBCHHHHHHHHHHHHHHHHTTCEEEEE--ECTTCH-HHHHHHHHHHHHTCCSEEEEECS
T ss_pred hcCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEE--eCCCCh-HHHHHHHHHHHhCCCCEEEEeCC
Confidence 4456788999855432 2456677777777777666542 222110 0112333333 35777777553
No 104
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=31.00 E-value=1.2e+02 Score=22.76 Aligned_cols=57 Identities=16% Similarity=0.066 Sum_probs=45.1
Q ss_pred EEEEEeecHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHhhCCcee
Q 018224 158 VESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIK 219 (359)
Q Consensus 158 a~~~~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~eypdI~ 219 (359)
-+++.=.|.+.+.+.+...++-|..+|.+.|.++|=- +.|..++.+.++-+++|.|.
T Consensus 6 ~lDLhG~~~~eA~~~l~~fl~~a~~~g~~~v~IIHGk-----G~GvLr~~V~~~L~~~~~V~ 62 (83)
T 2zqe_A 6 EVDLRGLTVAEALLEVDQALEEARALGLSTLRLLHGK-----GTGALRQAIREALRRDKRVE 62 (83)
T ss_dssp EEECTTCCHHHHHHHHHHHHHHHHHTTCSEEEEECCS-----TTSHHHHHHHHHHHHCTTEE
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECC-----CchHHHHHHHHHHhcCCcee
Confidence 3566667888999999999999999888999999832 23677888888877788775
No 105
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=30.80 E-value=1.8e+02 Score=25.40 Aligned_cols=64 Identities=9% Similarity=0.111 Sum_probs=34.4
Q ss_pred CCCcceEEEEcCC---CCcHHHHHHHHHHHHHcCCCeeEEEEEecCcccCCcHHHHHHH--HhcCceeeccc
Q 018224 26 DGSPRAVTLIPGD---GIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSI--RKNKVCLKGGL 92 (359)
Q Consensus 26 ~~~~~~I~vi~GD---GIGpEV~~~a~~vl~~~~~~ie~~~~~~g~~~~~lp~et~~~~--~~~da~l~G~~ 92 (359)
.+++++|+++--+ .-..++...+.+.++..|..+.+. ...... .-..+.++.+ ++.|+++..+.
T Consensus 5 ~~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~--~~~~~~-~~~~~~~~~l~~~~vdgiI~~~~ 73 (285)
T 3c3k_A 5 TAKTGMLLVMVSNIANPFCAAVVKGIEKTAEKNGYRILLC--NTESDL-ARSRSCLTLLSGKMVDGVITMDA 73 (285)
T ss_dssp --CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEE--ECTTCH-HHHHHHTHHHHTTCCSEEEECCC
T ss_pred CCCCCEEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEE--eCCCCH-HHHHHHHHHHHhCCCCEEEEeCC
Confidence 3467889998543 334567777777777777666542 222210 0011233333 35787777553
No 106
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=30.49 E-value=87 Score=26.98 Aligned_cols=58 Identities=7% Similarity=0.115 Sum_probs=41.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEecCcccCCcHHHHHHHHh------cCceeecc
Q 018224 30 RAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIRK------NKVCLKGG 91 (359)
Q Consensus 30 ~~I~vi~GDGIGpEV~~~a~~vl~~~~~~ie~~~~~~g~~~~~lp~et~~~~~~------~da~l~G~ 91 (359)
.+|++|-|---=-++++++.++|+..|++.|.. -+|. ...|+...+-.++ .++++-++
T Consensus 3 ~~V~Iimgs~SD~~v~~~a~~~l~~~gi~~ev~--V~sa--HR~p~~~~~~~~~a~~~~~~~ViIa~A 66 (159)
T 3rg8_A 3 PLVIILMGSSSDMGHAEKIASELKTFGIEYAIR--IGSA--HKTAEHVVSMLKEYEALDRPKLYITIA 66 (159)
T ss_dssp CEEEEEESSGGGHHHHHHHHHHHHHTTCEEEEE--ECCT--TTCHHHHHHHHHHHHTSCSCEEEEEEC
T ss_pred CeEEEEECcHHHHHHHHHHHHHHHHcCCCEEEE--EEcc--cCCHHHHHHHHHHhhhcCCCcEEEEEC
Confidence 469999887777889999999999998875432 2222 2478887776642 57777665
No 107
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=30.44 E-value=1e+02 Score=24.48 Aligned_cols=57 Identities=7% Similarity=-0.059 Sum_probs=38.9
Q ss_pred CcceEEEEcCCCCcHHHH-HHHHHHHHHcCCCeeEEEEEecCcccCCcHHHHHHHHhcCceeeccc
Q 018224 28 SPRAVTLIPGDGIGPLVT-NAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIRKNKVCLKGGL 92 (359)
Q Consensus 28 ~~~~I~vi~GDGIGpEV~-~~a~~vl~~~~~~ie~~~~~~g~~~~~lp~et~~~~~~~da~l~G~~ 92 (359)
++.+|-++=+.|+...++ ....+..+.-|++++..-...+. +. +.+.++|++|+||.
T Consensus 5 ~~mkIlL~C~aGmSTsllv~km~~~a~~~gi~v~i~a~~~~~----~~----~~~~~~DvvLLgPQ 62 (108)
T 3nbm_A 5 KELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGA----HY----DIMGVYDLIILAPQ 62 (108)
T ss_dssp CCEEEEEEESSSSHHHHHHHHHHHHHHHHTCSEEEEEEETTS----CT----TTGGGCSEEEECGG
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEcchHH----HH----hhccCCCEEEEChH
Confidence 567899999999888764 34445555558887765555542 11 12367999999995
No 108
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=29.97 E-value=2e+02 Score=25.19 Aligned_cols=72 Identities=10% Similarity=-0.040 Sum_probs=39.3
Q ss_pred HHHHHHHHHhcC--CCcEEEEEcCCchhhchHHHHHHHHHHHhhCCceeeceee-------HhHHHHHHHhCCCCccEEE
Q 018224 173 AKYAFEYAYLNY--RKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEII-------VDNCCMQLVSKPEQFDVMV 243 (359)
Q Consensus 173 ar~AFe~A~~r~--~~~Vt~v~KaNvl~~tdglf~~~~~eva~eypdI~~~~~~-------vD~~~~~Lv~~P~~fdViv 243 (359)
.+.|.++..++| ++++.++.-..-.. +.....+-+++..+++ ++++.... .-.++..+++...+.|.|+
T Consensus 116 g~~a~~~l~~~g~~~~~i~~i~g~~~~~-~~~~R~~Gf~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~ 193 (297)
T 3rot_A 116 GKKLGEKALELTPSAKRALVLNPQPGHI-GLEKRAYGIKTILQDK-GIFFEELDVGTDPNQVQSRVKSYFKIHPETNIIF 193 (297)
T ss_dssp HHHHHHHHHHHCTTCCEEEEEESCTTCH-HHHHHHHHHHHHHHHT-TCEEEEEECCSCHHHHHHHHHHHHHHCTTCCEEE
T ss_pred HHHHHHHHHHhcCCCceEEEEeCCCCcH-HHHHHHHHHHHHHHhc-CCeEEEeecCCChHHHHHHHHHHHHhCCCCCEEE
Confidence 344555555556 77888775332221 2234445566665555 55543332 1234455555445789999
Q ss_pred eCC
Q 018224 244 TPN 246 (359)
Q Consensus 244 ~~N 246 (359)
|.|
T Consensus 194 ~~~ 196 (297)
T 3rot_A 194 CLT 196 (297)
T ss_dssp ESS
T ss_pred EcC
Confidence 988
No 109
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=29.67 E-value=1.4e+02 Score=26.24 Aligned_cols=64 Identities=13% Similarity=0.120 Sum_probs=33.4
Q ss_pred CCCcceEEEEcCC---CCcHHHHHHHHHHHHHcCCCeeEEEEEecCcccCCcHHHHHHH--HhcCceeeccc
Q 018224 26 DGSPRAVTLIPGD---GIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSI--RKNKVCLKGGL 92 (359)
Q Consensus 26 ~~~~~~I~vi~GD---GIGpEV~~~a~~vl~~~~~~ie~~~~~~g~~~~~lp~et~~~~--~~~da~l~G~~ 92 (359)
.+++++|+++--| .--.++...+.+.++..|..+.+ +....+. .-..+.++.+ ++.|+++..+.
T Consensus 13 ~~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~--~~~~~~~-~~~~~~~~~l~~~~vdgiIi~~~ 81 (289)
T 2fep_A 13 SKKTTTVGVIIPDISSIFYSELARGIEDIATMYKYNIIL--SNSDQNM-EKELHLLNTMLGKQVDGIVFMGG 81 (289)
T ss_dssp ---CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEE--EECTTCH-HHHHHHHHHHHHTTCSEEEECCS
T ss_pred cCCCCeEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEE--EeCCCCH-HHHHHHHHHHHhCCCCEEEEecC
Confidence 4567899998433 23356777777777777765544 3332210 0012233333 45788877654
No 110
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=29.13 E-value=1.5e+02 Score=26.70 Aligned_cols=82 Identities=9% Similarity=0.093 Sum_probs=52.2
Q ss_pred CCCcceEEEEcCC----CCcHHHHHHHHHHHHHcCCCeeEEEEEecCc--cc---CCc---HHHHHHHHhcCceeecccc
Q 018224 26 DGSPRAVTLIPGD----GIGPLVTNAVEQVMEAMHAPIYFEKYEVHGD--MK---RVP---QQVLDSIRKNKVCLKGGLK 93 (359)
Q Consensus 26 ~~~~~~I~vi~GD----GIGpEV~~~a~~vl~~~~~~ie~~~~~~g~~--~~---~lp---~et~~~~~~~da~l~G~~~ 93 (359)
.+...+|.+|-|- |....+++++.+.++..|. +++.+++..- +. ..| .+..+.++++|+++++.-.
T Consensus 31 ~~~~mkIliI~GS~r~~s~t~~La~~~~~~l~~~g~--eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~~sP~ 108 (247)
T 2q62_A 31 STHRPRILILYGSLRTVSYSRLLAEEARRLLEFFGA--EVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVWVSPE 108 (247)
T ss_dssp CCSCCEEEEEECCCCSSCHHHHHHHHHHHHHHHTTC--EEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSEEEEEEEC
T ss_pred cCCCCeEEEEEccCCCCCHHHHHHHHHHHHHhhCCC--EEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCEEEEEeCC
Confidence 3445789999775 6777888888888887675 4445666432 10 122 4456788999999986521
Q ss_pred CCCCCCcccchHHHHhhcCcE
Q 018224 94 TPVGGGVSSLNVQLRKELDLY 114 (359)
Q Consensus 94 ~p~~~~~~s~~~~LR~~ldly 114 (359)
. +.+.-..|..-+|..
T Consensus 109 Y-----n~sipa~LKn~iD~l 124 (247)
T 2q62_A 109 R-----HGAMTGIMKAQIDWI 124 (247)
T ss_dssp S-----SSSCCHHHHHHHHTS
T ss_pred C-----CCCccHHHHHHHHHh
Confidence 1 224445677777753
No 111
>3tsn_A 4-hydroxythreonine-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: UNL; 2.63A {Campylobacter jejuni subsp}
Probab=28.91 E-value=32 Score=33.60 Aligned_cols=20 Identities=20% Similarity=0.267 Sum_probs=16.8
Q ss_pred cceEEEEcCC--CCcHHHHHHH
Q 018224 29 PRAVTLIPGD--GIGPLVTNAV 48 (359)
Q Consensus 29 ~~~I~vi~GD--GIGpEV~~~a 48 (359)
+.+|++-.|| ||||||+-.+
T Consensus 4 ~~~iaIT~GDpaGIGpEI~~ka 25 (367)
T 3tsn_A 4 MKKLAISIGDINSIGLEILVRS 25 (367)
T ss_dssp CCEEEEECCCTTTTHHHHHHHH
T ss_pred CCEEEEeCCCCccchHHHHHHh
Confidence 4579999999 8999998765
No 112
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=28.49 E-value=1.7e+02 Score=25.40 Aligned_cols=64 Identities=8% Similarity=0.004 Sum_probs=36.0
Q ss_pred CCCcceEEEE-cCC---CCcHHHHHHHHHHHHHcCCCeeEEEEEecCcccCCcHHHHHHH--HhcCceeeccc
Q 018224 26 DGSPRAVTLI-PGD---GIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSI--RKNKVCLKGGL 92 (359)
Q Consensus 26 ~~~~~~I~vi-~GD---GIGpEV~~~a~~vl~~~~~~ie~~~~~~g~~~~~lp~et~~~~--~~~da~l~G~~ 92 (359)
.+++++|+++ |.+ .--.++.....+.++..|..+.+....-..+. ..+.++.+ ++.|+++..+.
T Consensus 8 ~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~---~~~~~~~l~~~~vdgiIi~~~ 77 (289)
T 3g85_A 8 SQSKPTIALYWSSDISVNIISRFLRGLQSKLAKQNYNYNVVICPYKTDC---LHLEKGISKENSFDAAIIANI 77 (289)
T ss_dssp ---CCEEEEEEETTSCGGGHHHHHHHHHHHHHHTTTCSEEEEEEECTTC---GGGCGGGSTTTCCSEEEESSC
T ss_pred cCCCceEEEEeccccchHHHHHHHHHHHHHHHHcCCeEEEEecCCCchh---HHHHHHHHhccCCCEEEEecC
Confidence 3467899988 433 23456777777778777888776544433221 11122222 36788887664
No 113
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=27.52 E-value=2.7e+02 Score=24.82 Aligned_cols=26 Identities=23% Similarity=0.163 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEc
Q 018224 167 FCSERIAKYAFEYAYLNYRKKVTAVHK 193 (359)
Q Consensus 167 ~~~eRiar~AFe~A~~r~~~~Vt~v~K 193 (359)
+.+++.+++|.++|++.+ .+|+++|=
T Consensus 30 ~~s~~al~~A~~lA~~~~-a~l~ll~v 55 (309)
T 3cis_A 30 PAAQVAVRWAARDAELRK-IPLTLVHA 55 (309)
T ss_dssp HHHHHHHHHHHHHHHHHT-CCEEEEEE
T ss_pred HHHHHHHHHHHHHHHhcC-CcEEEEEE
Confidence 457889999999999874 67888873
No 114
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=27.25 E-value=2.9e+02 Score=24.08 Aligned_cols=72 Identities=10% Similarity=-0.015 Sum_probs=39.5
Q ss_pred HHHHHHHHHhcCCCcEEEEEcC-CchhhchHHHHHHHHHHHhhCC-ceeec---eeeHh---HHHHHHHhCCCCccEEEe
Q 018224 173 AKYAFEYAYLNYRKKVTAVHKA-NIMKLADGLFLESCREVATKYP-SIKYN---EIIVD---NCCMQLVSKPEQFDVMVT 244 (359)
Q Consensus 173 ar~AFe~A~~r~~~~Vt~v~Ka-Nvl~~tdglf~~~~~eva~eyp-dI~~~---~~~vD---~~~~~Lv~~P~~fdViv~ 244 (359)
.+.|.++-.++|++++-++.-. +.. +.....+-|.+..++++ +..+. ....+ .++.+|++....+|.|+|
T Consensus 126 ~~~a~~~L~~~G~~~I~~i~~~~~~~--~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~ 203 (293)
T 2iks_A 126 AEMLAEELRKFPAETVLYLGALPELS--VSFLREQGFRTAWKDDPREVHFLYANSYEREAAAQLFEKWLETHPMPQALFT 203 (293)
T ss_dssp HHHHHHHHHTSCCSSEEEEEECTTSH--HHHHHHHHHHHHHTTCCCCEEEEEESSSCHHHHHHHHHHHTTTSCCCSEEEE
T ss_pred HHHHHHHHHHCCCCEEEEEecCcccc--cHHHHHHHHHHHHHHcCCCccEEEcCCCChhhHHHHHHHHHhcCCCCCEEEE
Confidence 3445555566688888777533 221 12333455666666654 22111 11111 345677777667999999
Q ss_pred CC
Q 018224 245 PN 246 (359)
Q Consensus 245 ~N 246 (359)
.|
T Consensus 204 ~~ 205 (293)
T 2iks_A 204 TS 205 (293)
T ss_dssp SS
T ss_pred CC
Confidence 87
No 115
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=27.20 E-value=2e+02 Score=22.68 Aligned_cols=65 Identities=15% Similarity=0.087 Sum_probs=32.1
Q ss_pred HHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHhhCC-ceeeceeeHhHHHHHHHhCCCCccEEEeCCcch
Q 018224 176 AFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYP-SIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYG 249 (359)
Q Consensus 176 AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~eyp-dI~~~~~~vD~~~~~Lv~~P~~fdViv~~NlfG 249 (359)
+..+|+. +.+ |+.+|..- -..+.+++-.+..+ .+++...-+......+-..++.||+|++...|.
T Consensus 56 ~~~l~~~-~~~-v~~vD~~~-------~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~~ 121 (171)
T 1ws6_A 56 GLEAASE-GWE-AVLVEKDP-------EAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPYA 121 (171)
T ss_dssp HHHHHHT-TCE-EEEECCCH-------HHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCCTT
T ss_pred HHHHHHC-CCe-EEEEeCCH-------HHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECCCCc
Confidence 4444544 333 88888532 22334444333222 344433333222223334456899999887664
No 116
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=26.01 E-value=1.9e+02 Score=25.31 Aligned_cols=65 Identities=9% Similarity=0.084 Sum_probs=31.9
Q ss_pred CCCcceEEEEcCC---CCcHHHHHHHHHHHHHcCCCeeEEEEEecCcccCCcHHHHHHH--HhcCceeeccc
Q 018224 26 DGSPRAVTLIPGD---GIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSI--RKNKVCLKGGL 92 (359)
Q Consensus 26 ~~~~~~I~vi~GD---GIGpEV~~~a~~vl~~~~~~ie~~~~~~g~~~~~lp~et~~~~--~~~da~l~G~~ 92 (359)
.+++++|+++-.+ ..-.++...+.+.++..|..+.+. ++..... .-..+.++.+ ++.|+++..+.
T Consensus 5 ~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~-~~~~~~~-~~~~~~~~~l~~~~vdgiI~~~~ 74 (290)
T 3clk_A 5 KKSSNVIAAVVSSVRTNFAQQILDGIQEEAHKNGYNLIIV-YSGSADP-EEQKHALLTAIERPVMGILLLSI 74 (290)
T ss_dssp ---CCEEEEECCCCSSSHHHHHHHHHHHHHHTTTCEEEEE-C-----------CHHHHHHSSCCSEEEEESC
T ss_pred cccCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEE-eCCCCCH-HHHHHHHHHHHhcCCCEEEEecc
Confidence 3467889999543 344567777777777777655443 0222111 0112234444 35787776554
No 117
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=26.01 E-value=2.2e+02 Score=25.21 Aligned_cols=62 Identities=10% Similarity=0.038 Sum_probs=36.6
Q ss_pred CCCcceEEEEcCCCCc---HHHHHHHHHHHHHcCC----CeeEEEEEecCcccCCcHHHHHHHH--hcCceee
Q 018224 26 DGSPRAVTLIPGDGIG---PLVTNAVEQVMEAMHA----PIYFEKYEVHGDMKRVPQQVLDSIR--KNKVCLK 89 (359)
Q Consensus 26 ~~~~~~I~vi~GDGIG---pEV~~~a~~vl~~~~~----~ie~~~~~~g~~~~~lp~et~~~~~--~~da~l~ 89 (359)
..++++|+++| +=-. .++++...+.++..|. ++.+...+...+.+ --.+.++.+. +.|+++.
T Consensus 5 ~~~t~~IGvi~-~~~~p~~~~~~~gi~~~l~~~Gy~~g~~v~l~~~~~~~~~~-~~~~~~~~l~~~~vDgII~ 75 (302)
T 2qh8_A 5 MAKTAKVAVSQ-IVEHPALDATRQGLLDGLKAKGYEEGKNLEFDYKTAQGNPA-IAVQIARQFVGENPDVLVG 75 (302)
T ss_dssp --CCEEEEEEE-SSCCHHHHHHHHHHHHHHHHTTCCBTTTEEEEEEECTTCHH-HHHHHHHHHHHTCCSEEEE
T ss_pred ccCCcEEEEEE-eccChhHHHHHHHHHHHHHHcCCCCCCceEEEEecCCCCHH-HHHHHHHHHHhCCCCEEEE
Confidence 44789999997 3222 4677888888888777 77776666544310 1122334343 4677765
No 118
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=25.79 E-value=1.8e+02 Score=26.07 Aligned_cols=37 Identities=11% Similarity=0.107 Sum_probs=24.9
Q ss_pred CCCCcceEEEEcC---CCCcHHHHHHHHHHHHHcCCCeeE
Q 018224 25 GDGSPRAVTLIPG---DGIGPLVTNAVEQVMEAMHAPIYF 61 (359)
Q Consensus 25 ~~~~~~~I~vi~G---DGIGpEV~~~a~~vl~~~~~~ie~ 61 (359)
+.+++++|+++-- +....++...+.+.++..|..+.+
T Consensus 56 ~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~ 95 (332)
T 2hsg_A 56 ASKKTTTVGVIIPDISNIFYAELARGIEDIATMYKYNIIL 95 (332)
T ss_dssp TTC-CCEEEEEEC--CCSHHHHHHHHHHHHHHHHTCEEEE
T ss_pred HhCCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEE
Confidence 3456789999843 345567888888888877866554
No 119
>3qd7_X Uncharacterized protein YDAL; alpha/beta/alpha fold, endonuclease, hydrolase; 2.30A {Escherichia coli}
Probab=25.78 E-value=1.9e+02 Score=23.88 Aligned_cols=62 Identities=11% Similarity=0.017 Sum_probs=46.8
Q ss_pred EEEEEeecHHHHHHHHHHHHHHHHhcCCCcEEEEE-cCCchhhchHHHHHHHHHHHhhCCcee
Q 018224 158 VESLKVITKFCSERIAKYAFEYAYLNYRKKVTAVH-KANIMKLADGLFLESCREVATKYPSIK 219 (359)
Q Consensus 158 a~~~~~~Tr~~~eRiar~AFe~A~~r~~~~Vt~v~-KaNvl~~tdglf~~~~~eva~eypdI~ 219 (359)
-+++.=.|.+.+.+.+...+..|..+|.+.|.++| |.+--+...+..++.+.++-++.|.|.
T Consensus 49 ~LDLHG~~~~EA~~~L~~fL~~a~~~g~r~V~IIHGKG~gs~~~~~vLk~~V~~wL~~~~~V~ 111 (137)
T 3qd7_X 49 SLNLLRQPVEECRKMVFSFIQQALADGLRNVLIIHGKGRDDKSHANIVRSYVARWLTEFDDVQ 111 (137)
T ss_dssp EEECTTCCHHHHHHHHHHHHHHHHHTTCSEEEEECCCCSSTTSHHHHHHHHHHHHHHTSTTEE
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCchHHHHHHHHHHHhcCCcee
Confidence 46777788999999999999999998888999998 443222122366777888877788775
No 120
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=25.60 E-value=3e+02 Score=24.14 Aligned_cols=65 Identities=12% Similarity=0.072 Sum_probs=35.8
Q ss_pred CCCCcceEEEEcCCC---CcHHHHHHHHHHHHHcCCCeeEEEEEecCcccCCcHHHHHHH--HhcCceeeccc
Q 018224 25 GDGSPRAVTLIPGDG---IGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSI--RKNKVCLKGGL 92 (359)
Q Consensus 25 ~~~~~~~I~vi~GDG---IGpEV~~~a~~vl~~~~~~ie~~~~~~g~~~~~lp~et~~~~--~~~da~l~G~~ 92 (359)
+.+++++|+++-.+- --.++...+.+.++..|..+.+.. ..... .-..+.++.+ ++.|+++..+.
T Consensus 11 ~~~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~--~~~~~-~~~~~~~~~l~~~~vdgiI~~~~ 80 (303)
T 3kke_A 11 RHSRSGTIGLIVPDVNNAVFADMFSGVQMAASGHSTDVLLGQ--IDAPP-RGTQQLSRLVSEGRVDGVLLQRR 80 (303)
T ss_dssp ------CEEEEESCTTSTTHHHHHHHHHHHHHHTTCCEEEEE--CCSTT-HHHHHHHHHHHSCSSSEEEECCC
T ss_pred hhCCCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEEe--CCCCh-HHHHHHHHHHHhCCCcEEEEecC
Confidence 445678899985443 446788888888888887776532 22210 1123444544 35788887665
No 121
>4e4r_A Phosphate acetyltransferase; structural genomics, EUTD, center for structural genomics of infectious diseases, csgid; HET: TRS; 1.44A {Staphylococcus aureus subsp}
Probab=25.48 E-value=1.7e+02 Score=27.70 Aligned_cols=99 Identities=17% Similarity=0.050 Sum_probs=61.7
Q ss_pred cHHHHHHHHHHHHHHHHhcCC-CcEEEEEcCCch-hhc--hHHHHHHHHHHHhhCC----ceeece-eeHhHHHHHHH--
Q 018224 165 TKFCSERIAKYAFEYAYLNYR-KKVTAVHKANIM-KLA--DGLFLESCREVATKYP----SIKYNE-IIVDNCCMQLV-- 233 (359)
Q Consensus 165 Tr~~~eRiar~AFe~A~~r~~-~~Vt~v~KaNvl-~~t--dglf~~~~~eva~eyp----dI~~~~-~~vD~~~~~Lv-- 233 (359)
|.+....|+..+-++|+.-|- -||-+..=++.- ... ...-++.++-+.+.+| ++.++- +..|++.-.=+
T Consensus 177 ~~e~l~~ia~~a~~~a~~~Gi~PkVAlLs~s~~Gs~~~~~~~~~~~A~~llk~~~~~~~~~~~vdGpl~~D~A~~~~~~~ 256 (331)
T 4e4r_A 177 DSQGLAEIAVESAKSALSFGMDPKVAMLSFSTKGSAKSDDVTKVQEAVKLAQQKAEEEKLEAIIDGEFQFDAAIVPGVAE 256 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCEEEEECSSSTTSSCSHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECHHHHHCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCeEEEEeCCCCCCCCCCCcHHHHHHHHHHHhhCcCCCCCeEEEccCcHHHHcCHHHHH
Confidence 567778889999999998663 356565432211 111 1123444443344456 777664 45787754333
Q ss_pred ----hCC--CCccEEEeCCc-chhhHHHhhhhhcCCC
Q 018224 234 ----SKP--EQFDVMVTPNL-YGNLVSNTAAGIAGGT 263 (359)
Q Consensus 234 ----~~P--~~fdViv~~Nl-fGDILSDlaa~l~Ggl 263 (359)
.+| +++||+|+||+ =|+|+--+..-+.|+.
T Consensus 257 ~k~~~s~vaG~advli~P~l~aGNi~~K~l~~~~~a~ 293 (331)
T 4e4r_A 257 KKAPGAKLQGDANVFVFPSLEAGNIGYKIAQRLGGYD 293 (331)
T ss_dssp HHSTTCSCSSCCCEEECSSHHHHHHHHHHHHHTTCCE
T ss_pred hhCCCCccCCcCCEEEeCChhHHHHHHHHHHHhcCCe
Confidence 333 58999999999 6999998887666553
No 122
>3uor_A ABC transporter sugar binding protein; ALFA/beta protein, periplasmic-binding protein, maltose, SUG binding protein; 2.20A {Xanthomonas axonopodis PV}
Probab=25.35 E-value=1.1e+02 Score=29.38 Aligned_cols=58 Identities=14% Similarity=0.102 Sum_probs=38.7
Q ss_pred CCcEEEEEcCCchhhchHHHHHHHHHHHhhCCceeeceeeHh--HHHHHH---HhCCCCccEEEeCC
Q 018224 185 RKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVD--NCCMQL---VSKPEQFDVMVTPN 246 (359)
Q Consensus 185 ~~~Vt~v~KaNvl~~tdglf~~~~~eva~eypdI~~~~~~vD--~~~~~L---v~~P~~fdViv~~N 246 (359)
..+||+-+-.+ ....+.+++++..++||+|+++...++ ....+| +..-..+||+...+
T Consensus 29 ~~tlt~w~~~~----~~~~~~~~~~~F~~~~pgi~V~~~~~~~~~~~~kl~~~~~sg~~pDv~~~~~ 91 (458)
T 3uor_A 29 KTTVRFWAMGK----EAEVVAELVADFEKQNPTIHVDVQNIPMTAAHEKLLTAFAADGLPDVCQLGN 91 (458)
T ss_dssp CEEEEEEECTH----HHHHHHHHHHHHHTTCTTEEEEEEECCHHHHHHHHHHHHHTTCCCSEEEEET
T ss_pred CeEEEEEecCC----cHHHHHHHHHHHHHHCCCcEEEEEEcChHHHHHHHHHHHhCCCCCCEEEECc
Confidence 45677765322 235778889999999999999888763 333333 34445799888754
No 123
>1v5i_B POIA1, IA-1=serine proteinase inhibitor; protease-inhibitor complex, subtilisin, hydrolase-Pro binding complex; 1.50A {Pleurotus ostreatus} SCOP: d.58.3.2 PDB: 1itp_A
Probab=25.32 E-value=1.5e+02 Score=21.59 Aligned_cols=55 Identities=11% Similarity=-0.005 Sum_probs=36.5
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEecCc-cc-CCcHHHHHHHHhc
Q 018224 28 SPRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGD-MK-RVPQQVLDSIRKN 84 (359)
Q Consensus 28 ~~~~I~vi~GDGIGpEV~~~a~~vl~~~~~~ie~~~~~~g~~-~~-~lp~et~~~~~~~ 84 (359)
++|-| +++ ||+..+.++..++.+...|-.+..++-.-... +. .+|+++++.+++.
T Consensus 3 ~sYIV-~lk-~~~~~~~~~~~~~~~~~~gg~i~~~y~~~~~~Gfa~~~~~~~l~~l~~~ 59 (76)
T 1v5i_B 3 GKFIV-IFK-NDVSEDKIRETKDEVIAEGGTITNEYNMPGMKGFAGELTPQSLTKFQGL 59 (76)
T ss_dssp EEEEE-EEC-TTCCHHHHHHHHHHHHHHTCCCCEEEEETTEEEEEEEECHHHHHHHHHT
T ss_pred ceEEE-EEC-CCCCHHHHHHHHHHHHhhCCceEEEEEcCceeEEEEEcCHHHHHHHHhc
Confidence 34444 443 67888888888888888776666554211111 22 5899999999877
No 124
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=25.20 E-value=2.3e+02 Score=24.36 Aligned_cols=59 Identities=5% Similarity=-0.032 Sum_probs=34.3
Q ss_pred CCCcceEEEEcCC---CCcHHHHHHHHHHHHHcCCCeeEEEEEecCcccCCcHHHHHHH--HhcCcee
Q 018224 26 DGSPRAVTLIPGD---GIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSI--RKNKVCL 88 (359)
Q Consensus 26 ~~~~~~I~vi~GD---GIGpEV~~~a~~vl~~~~~~ie~~~~~~g~~~~~lp~et~~~~--~~~da~l 88 (359)
.+++++|+++-.+ .--.++.....+.++..|..+.+.... ..+ -..+.++.+ ++.|+++
T Consensus 2 ~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~---~~~~~~~~l~~~~vdgiI 65 (280)
T 3gyb_A 2 SLRTQLIAVLIDDYSNPWFIDLIQSLSDVLTPKGYRLSVIDSL-TSQ---AGTDPITSALSMRPDGII 65 (280)
T ss_dssp --CCCEEEEEESCTTSGGGHHHHHHHHHHHGGGTCEEEEECSS-SSC---SSSCHHHHHHTTCCSEEE
T ss_pred CCccCEEEEEeCCCCChHHHHHHHHHHHHHHHCCCEEEEEeCC-Cch---HHHHHHHHHHhCCCCEEE
Confidence 3567899998543 345677777777777777666654433 221 123344444 4678877
No 125
>1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine biosynthesis,oxidoreductase, structural GE PSI; 2.01A {Pseudomonas aeruginosa}
Probab=25.16 E-value=37 Score=32.68 Aligned_cols=18 Identities=39% Similarity=0.743 Sum_probs=15.3
Q ss_pred eEEEEcCC--CCcHHHHHHH
Q 018224 31 AVTLIPGD--GIGPLVTNAV 48 (359)
Q Consensus 31 ~I~vi~GD--GIGpEV~~~a 48 (359)
+|++-.|| ||||||+-.+
T Consensus 4 ~iaIT~GDpaGIGpEii~ka 23 (328)
T 1yxo_A 4 RFALTPGEPAGIGPDLCLLL 23 (328)
T ss_dssp CEEEECCSTTSSHHHHHHHH
T ss_pred EEEEcCCCCcchhHHHHHHH
Confidence 58999998 8999998755
No 126
>3bvr_A NOTI restriction endonuclease; protein-DNA complex; HET: DNA; 2.50A {Nocardia otitidiscaviarum} PDB: 3bvq_A* 3c25_A*
Probab=24.33 E-value=19 Score=34.44 Aligned_cols=32 Identities=25% Similarity=0.369 Sum_probs=26.2
Q ss_pred hCCCCccEEEeCCcc--hhhHHHhhhhhcC-CCCc
Q 018224 234 SKPEQFDVMVTPNLY--GNLVSNTAAGIAG-GTGV 265 (359)
Q Consensus 234 ~~P~~fdViv~~Nlf--GDILSDlaa~l~G-glGl 265 (359)
++++.||||+|||-+ +.||+|.+.-++| ++.+
T Consensus 71 ~d~ePydvIiCPiRL~dy~il~~~s~~~Fg~~~~l 105 (383)
T 3bvr_A 71 VDNERYDWLVCPNRALDPLFMSAASRKLFGYGPTE 105 (383)
T ss_dssp ETTEEEEEECCGGGGCCHHHHHHHHHHHHTCCTTC
T ss_pred CCCCCceEEEcccccccHHHHHHHHHHhcCCCcch
Confidence 677889999999975 5689999998888 4444
No 127
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=23.17 E-value=1.5e+02 Score=25.49 Aligned_cols=56 Identities=11% Similarity=0.228 Sum_probs=39.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEecCcccCCcHHHHHHHHhc--Cceeecc
Q 018224 32 VTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIRKN--KVCLKGG 91 (359)
Q Consensus 32 I~vi~GDGIGpEV~~~a~~vl~~~~~~ie~~~~~~g~~~~~lp~et~~~~~~~--da~l~G~ 91 (359)
|++|-|---=-++++++..+|+..|++.|.. -+|. ...|++..+-.+++ ++++-++
T Consensus 2 V~Iimgs~SD~~v~~~a~~~l~~~gi~~dv~--V~sa--HR~p~~~~~~~~~a~~~ViIa~A 59 (157)
T 2ywx_A 2 ICIIMGSESDLKIAEKAVNILKEFGVEFEVR--VASA--HRTPELVEEIVKNSKADVFIAIA 59 (157)
T ss_dssp EEEEESSGGGHHHHHHHHHHHHHTTCCEEEE--ECCT--TTCHHHHHHHHHHCCCSEEEEEE
T ss_pred EEEEEccHHHHHHHHHHHHHHHHcCCCeEEE--EEcc--cCCHHHHHHHHHhcCCCEEEEEc
Confidence 6778777666789999999999999884332 2222 25788888777643 6666655
No 128
>1nha_A TFIIF-alpha, transcription initiation factor IIF, alpha subunit; transcription factor, human general transcription factor TFIIF, RAP74; NMR {Homo sapiens} SCOP: a.4.5.30 PDB: 1onv_A
Probab=22.30 E-value=39 Score=26.09 Aligned_cols=35 Identities=34% Similarity=0.469 Sum_probs=26.4
Q ss_pred HHHHHHHHHcCcccCCCCC-------CCCcHHHHHHHHHHhc
Q 018224 324 ETAVKRVISEEKYRTKDLG-------GGCTTQQIVDAVIANL 358 (359)
Q Consensus 324 ~~Av~~~l~~g~~~T~Dlg-------g~~~T~e~~~av~~~l 358 (359)
|++|+++|....+.|.||- +..+++|..+.+.+.|
T Consensus 21 Ee~VRryL~rkPmTT~dLl~KFK~r~~~~~~~e~v~~~a~IL 62 (82)
T 1nha_A 21 EDAVRRYLTRKPMTTKDLLKKFQTKKTGLSSEQTVNVLAQIL 62 (82)
T ss_dssp HHHHHHHHHHSCBCHHHHHHHTTSSCCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHhcccCCCHHHHHHHHHHH
Confidence 3788999988878889992 3458888888776654
No 129
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=22.13 E-value=3.2e+02 Score=23.30 Aligned_cols=71 Identities=6% Similarity=-0.124 Sum_probs=35.8
Q ss_pred HHHHHHHHhcCCCcEEEEEcCC-c---hhhchH-HHHHHHHHHHhhCCceeece-------eeHh---HHHHHHHhCCCC
Q 018224 174 KYAFEYAYLNYRKKVTAVHKAN-I---MKLADG-LFLESCREVATKYPSIKYNE-------IIVD---NCCMQLVSKPEQ 238 (359)
Q Consensus 174 r~AFe~A~~r~~~~Vt~v~KaN-v---l~~tdg-lf~~~~~eva~eypdI~~~~-------~~vD---~~~~~Lv~~P~~ 238 (359)
+.|.++..++|++++-++.-.. - .. +.. ...+-+.+..+++. ++++. ...+ .++.++++....
T Consensus 103 ~~a~~~L~~~G~~~i~~i~~~~~~~~~~~-~~~~~R~~gf~~~l~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 180 (276)
T 2h0a_A 103 RLAGAYLARFPGPIFAIAVEEEPDRAFRR-TVFAERMAGFQEALKEAG-RPFSPDRLYITRHSQEGGRLALRHFLEKASP 180 (276)
T ss_dssp HHHHHHHTTSSSCEEEEEECCSCCC---C-CHHHHHHHHHHHHHHHTT-CCCCGGGEEEECSSHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHcCCCeEEEEecCcccccccc-hhHHHHHHHHHHHHHHcC-CCCChHHeeecCCChHHHHHHHHHHHhCCCC
Confidence 3444555566888888776432 1 11 122 22334444444431 22111 1112 345677776667
Q ss_pred ccEEEeCC
Q 018224 239 FDVMVTPN 246 (359)
Q Consensus 239 fdViv~~N 246 (359)
+|.|+|.|
T Consensus 181 ~~ai~~~~ 188 (276)
T 2h0a_A 181 PLNVFAGA 188 (276)
T ss_dssp SEEEECSS
T ss_pred CCEEEECC
Confidence 89999876
No 130
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=21.97 E-value=1.7e+02 Score=25.74 Aligned_cols=58 Identities=17% Similarity=0.292 Sum_probs=42.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEecCcccCCcHHHHHHHHh-----cCceeecc
Q 018224 30 RAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIRK-----NKVCLKGG 91 (359)
Q Consensus 30 ~~I~vi~GDGIGpEV~~~a~~vl~~~~~~ie~~~~~~g~~~~~lp~et~~~~~~-----~da~l~G~ 91 (359)
..|++|-|---=-++++++..+|+..|++.|.. -+|. ...|++..+-.++ +++++-++
T Consensus 14 ~~V~IimGS~SD~~v~~~a~~~L~~~Gi~~dv~--V~Sa--HR~p~~l~~~~~~a~~~g~~ViIa~A 76 (183)
T 1o4v_A 14 PRVGIIMGSDSDLPVMKQAAEILEEFGIDYEIT--IVSA--HRTPDRMFEYAKNAEERGIEVIIAGA 76 (183)
T ss_dssp CEEEEEESCGGGHHHHHHHHHHHHHTTCEEEEE--ECCT--TTCHHHHHHHHHHTTTTTCCEEEEEE
T ss_pred CeEEEEeccHHHHHHHHHHHHHHHHcCCCeEEE--EEcc--cCCHHHHHHHHHHHHhCCCcEEEEec
Confidence 478999988777899999999999998874332 2222 2478888776653 57777665
No 131
>3cfx_A UPF0100 protein MA_0280; ABC transporter, binding protein, molybdate, tungstate, LIGA unknown function, transport protein; 1.60A {Methanosarcina acetivorans}
Probab=21.88 E-value=1.6e+02 Score=26.31 Aligned_cols=58 Identities=16% Similarity=0.218 Sum_probs=38.2
Q ss_pred CcEEEEEcCCchhhchHHHHHHHHHHHhhCCceeeceeeH--hHHHHHHHhCCCCccEEEeCCc
Q 018224 186 KKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIV--DNCCMQLVSKPEQFDVMVTPNL 247 (359)
Q Consensus 186 ~~Vt~v~KaNvl~~tdglf~~~~~eva~eypdI~~~~~~v--D~~~~~Lv~~P~~fdViv~~Nl 247 (359)
..|++.. +-.+ ...+.++.++..++||+|+++...- ..+..++...-..+||++..+.
T Consensus 5 ~~l~v~~-a~s~---~~~~~~l~~~F~~~~~gi~V~~~~~~s~~l~~~i~~~g~~~Dv~~~a~~ 64 (296)
T 3cfx_A 5 EVLTVFH-AGSL---SVPFEELEAEFEAQHPGVDVQREAAGSAQSVRKITELGKKADVLASADY 64 (296)
T ss_dssp CEEEEEE-CGGG---HHHHHHHHHHHHHHSTTCEEEEEECCHHHHHHHHHTSCCCCSEEEESST
T ss_pred ceEEEEe-cccH---HHHHHHHHHHHHHHCCCceEEEEeCchHHHHHHHHhCCCCCcEEEECCh
Confidence 3466654 2222 2467788888888899988877653 4566677652346999998764
No 132
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=21.79 E-value=2.3e+02 Score=25.54 Aligned_cols=72 Identities=7% Similarity=-0.003 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHhhCCcee--e--ceee---HhHHHHHHHhCCCCccEEEe
Q 018224 172 IAKYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIK--Y--NEII---VDNCCMQLVSKPEQFDVMVT 244 (359)
Q Consensus 172 iar~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~eypdI~--~--~~~~---vD~~~~~Lv~~P~~fdViv~ 244 (359)
..+.|.++-.++|++++-++.-..-.. +.....+-+.+..+++. +. + .... .-.++.++++.+. +|.|+|
T Consensus 161 ~~~~a~~~L~~~G~~~I~~i~~~~~~~-~~~~R~~Gf~~al~~~g-~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~ai~~ 237 (333)
T 3jvd_A 161 GFFQLTESVLGGSGMNIAALVGEESLS-TTQERMRGISHAASIYG-AEVTFHFGHYSVESGEEMAQVVFNNGL-PDALIV 237 (333)
T ss_dssp HHHHHHHHHCCSSSCEEEEEESCTTSH-HHHHHHHHHHHHHHHTT-CEEEEEECCSSHHHHHHHHHHHHHTCC-CSEEEE
T ss_pred HHHHHHHHHHHCCCCeEEEEeCCCCCc-cHHHHHHHHHHHHHHCC-CCEEEecCCCCHHHHHHHHHHHhcCCC-CcEEEE
Confidence 345566666677888988886542221 23344455666655553 22 1 1111 1234556666666 999999
Q ss_pred CC
Q 018224 245 PN 246 (359)
Q Consensus 245 ~N 246 (359)
.|
T Consensus 238 ~n 239 (333)
T 3jvd_A 238 AS 239 (333)
T ss_dssp CC
T ss_pred CC
Confidence 88
No 133
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=21.74 E-value=2.7e+02 Score=24.50 Aligned_cols=58 Identities=7% Similarity=0.134 Sum_probs=35.9
Q ss_pred cceEEEEcCCCCc----HHHHHHHHHHHHHcCC---CeeEEEEEecCcccCCcHHHHHHHH--hcCceee
Q 018224 29 PRAVTLIPGDGIG----PLVTNAVEQVMEAMHA---PIYFEKYEVHGDMKRVPQQVLDSIR--KNKVCLK 89 (359)
Q Consensus 29 ~~~I~vi~GDGIG----pEV~~~a~~vl~~~~~---~ie~~~~~~g~~~~~lp~et~~~~~--~~da~l~ 89 (359)
+++|+++|. +. .++++...+.++..|. .+.+...+...+.+ --.+.++.+. +.|+++.
T Consensus 2 ~~~Igvi~~--~~~p~~~~i~~gi~~~l~~~gy~g~~v~l~~~~~~~~~~-~~~~~~~~l~~~~vDgII~ 68 (295)
T 3lft_A 2 NAKIGVLQF--VSHPSLDLIYKGIQDGLAEEGYKDDQVKIDFMNSEGDQS-KVATMSKQLVANGNDLVVG 68 (295)
T ss_dssp CEEEEEEEC--SCCHHHHHHHHHHHHHHHHTTCCGGGEEEEEEECTTCHH-HHHHHHHHHTTSSCSEEEE
T ss_pred ceEEEEEEc--cCChhHHHHHHHHHHHHHHcCCCCCceEEEEecCCCCHH-HHHHHHHHHHhcCCCEEEE
Confidence 588999963 43 5788888888888888 77776555543210 1122333342 4576665
No 134
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=21.43 E-value=3.9e+02 Score=23.11 Aligned_cols=83 Identities=5% Similarity=-0.113 Sum_probs=42.5
Q ss_pred EeecHHHHHHHHHHHHHHHHh--------cCCCcEEEEEcC-CchhhchHHHHHHHHHHHhhC-Cceeecee-e----Hh
Q 018224 162 KVITKFCSERIAKYAFEYAYL--------NYRKKVTAVHKA-NIMKLADGLFLESCREVATKY-PSIKYNEI-I----VD 226 (359)
Q Consensus 162 ~~~Tr~~~eRiar~AFe~A~~--------r~~~~Vt~v~Ka-Nvl~~tdglf~~~~~eva~ey-pdI~~~~~-~----vD 226 (359)
..-...+.+..+++..+...+ +|++++.++.-. +.. ......+-|.+..+++ +.+..... . .+
T Consensus 109 ~~d~~~~g~~~~~~L~~~~~~~~~~~~~g~g~~~i~~i~~~~~~~--~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~ 186 (309)
T 2fvy_A 109 GTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHP--DAEARTTYVIKELNDKGIKTEQLQLDTAMWDTA 186 (309)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHCGGGCTTCSSSEEEEEEECSTTCH--HHHHHHHHHHHHHHHTTCCEEEEEEEECTTCHH
T ss_pred ecCHHHHHHHHHHHHHHHHhhcccccccCCCceEEEEEEcCCCCc--cHHHHHHHHHHHHHhcCCceEEEEEecCCCCHH
Confidence 344456667777777665532 455677666432 211 1223334455544443 33332211 1 11
Q ss_pred ---HHHHHHHhC-C-CCccEEEeCC
Q 018224 227 ---NCCMQLVSK-P-EQFDVMVTPN 246 (359)
Q Consensus 227 ---~~~~~Lv~~-P-~~fdViv~~N 246 (359)
.++.++++. | ..+|.|+|.|
T Consensus 187 ~~~~~~~~~l~~~~~~~~~ai~~~~ 211 (309)
T 2fvy_A 187 QAKDKMDAWLSGPNANKIEVVIANN 211 (309)
T ss_dssp HHHHHHHHHHTSTTGGGCCEEEESS
T ss_pred HHHHHHHHHHHhCCCCCccEEEECC
Confidence 345566665 6 5899999987
No 135
>1elj_A Maltodextrin-binding protein; protein-carbohydrate complex, maltose binding protein, MBP fold, ABC transporter fold, thermophilic protein; HET: CME GLC; 1.85A {Pyrococcus furiosus} SCOP: c.94.1.1
Probab=21.39 E-value=95 Score=28.66 Aligned_cols=44 Identities=14% Similarity=0.051 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhhCCceeeceeeHhHHHHHHHh---CCCCccEEEeC
Q 018224 202 GLFLESCREVATKYPSIKYNEIIVDNCCMQLVS---KPEQFDVMVTP 245 (359)
Q Consensus 202 glf~~~~~eva~eypdI~~~~~~vD~~~~~Lv~---~P~~fdViv~~ 245 (359)
..+.+++++..++||+|+++...++....+|.+ .-..+||+...
T Consensus 20 ~~~~~~i~~F~~~~p~i~V~~~~~~~~~~kl~~~~~~g~~PDv~~~~ 66 (381)
T 1elj_A 20 EVFQSLAEEYMALCPEVEIVFEQKPNLEDALKAAIPTGQGPDLFIWA 66 (381)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEECTTHHHHHHHHTTTTCSCSEEEEE
T ss_pred HHHHHHHHHHHHHCCCcEEEEEECCcHHHHHHHHHhcCCCCcEEEeC
Confidence 456778888888899999888877654444532 34567887643
No 136
>3c9h_A ABC transporter, substrate binding protein; structural genom MCSG, PSI-2, protein structure initiative; HET: CIT; 1.90A {Agrobacterium tumefaciens str}
Probab=21.33 E-value=1.1e+02 Score=28.13 Aligned_cols=56 Identities=9% Similarity=0.042 Sum_probs=36.4
Q ss_pred CcEEEEEcCCchhhchHHHHHHHHHHHhhCCceeeceeeHh--HHHHHHHhC----CCCccEEEeCC
Q 018224 186 KKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIVD--NCCMQLVSK----PEQFDVMVTPN 246 (359)
Q Consensus 186 ~~Vt~v~KaNvl~~tdglf~~~~~eva~eypdI~~~~~~vD--~~~~~Lv~~----P~~fdViv~~N 246 (359)
.+|++.+=. ....+.+++++..++||+|+++....+ ....+|... -..+||+...+
T Consensus 34 ~~L~v~~~~-----~~~~~~~~~~~Fe~~~Pgi~V~~~~~~~~~~~~kl~~~~~ag~~~~DV~~~~~ 95 (355)
T 3c9h_A 34 QTLVVYSSL-----DEPLATPMIEGFQKANPDIAVHYEDMLTGEIYDRIVKETDAGKKTADFAFSSA 95 (355)
T ss_dssp CEEEEEECS-----CHHHHHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHHHHTTCCBCSEEEESC
T ss_pred CEEEEEeCC-----CHHHHHHHHHHHHHHCcCeEEEEEeCChHHHHHHHHHHHhcCCCCCCEEEecc
Confidence 467776532 224667788888888999888877663 344555432 24689888765
No 137
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=21.31 E-value=2e+02 Score=25.03 Aligned_cols=70 Identities=21% Similarity=0.139 Sum_probs=39.1
Q ss_pred HHHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHhhCCceeeceeeH-----hHHHHHHHhCCCCccEEEeCC
Q 018224 174 KYAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYPSIKYNEIIV-----DNCCMQLVSKPEQFDVMVTPN 246 (359)
Q Consensus 174 r~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~eypdI~~~~~~v-----D~~~~~Lv~~P~~fdViv~~N 246 (359)
+.|.++-. +|++++-++.-..-.. +.....+-+.+..+++ +++++..+. -.++.++++...++|.|+|.|
T Consensus 112 ~~a~~~L~-~G~~~I~~i~~~~~~~-~~~~R~~Gf~~~l~~~-g~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~ 186 (277)
T 3hs3_A 112 KESIKLLS-KKIEKVLIQHWPLSLP-TIRERIEAMTAEASKL-KIDYLLEETPENNPYISAQSALNKSNQFDAIITVN 186 (277)
T ss_dssp HHHHHTSC-TTCCEEEEEESCTTSH-HHHHHHHHHHHHHHHT-TCEEEEEECCSSCHHHHHHHHHHTGGGCSEEECSS
T ss_pred HHHHHHHH-hCCCEEEEEeCCCcCc-cHHHHHHHHHHHHHHC-CCCCCCCCccCCchHHHHHHHHcCCCCCCEEEECC
Confidence 34444444 6788888886432121 2233344555555554 333322111 245667777767899999988
No 138
>2p8i_A Putative dioxygenase; YP_555069.1, structural genomics, JOIN for structural genomics, JCSG, protein structure initiative oxidoreductase; HET: MSE CIT; 1.40A {Burkholderia xenovorans} SCOP: d.58.55.1 PDB: 2nyh_A*
Probab=21.01 E-value=81 Score=25.81 Aligned_cols=36 Identities=14% Similarity=0.320 Sum_probs=29.6
Q ss_pred eeeceeeHhHHHHHHHhCCCCccEEEeCCcchhhHHH
Q 018224 218 IKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSN 254 (359)
Q Consensus 218 I~~~~~~vD~~~~~Lv~~P~~fdViv~~NlfGDILSD 254 (359)
|.+.....+...-+|..|-+.++|.|-+|- ||=+.|
T Consensus 62 v~f~~~~f~~~v~WL~~nrg~LsVLiHP~T-gddl~D 97 (117)
T 2p8i_A 62 LAFTQEQFADLVGWLTLNHGALDIFLHPNT-GDALRD 97 (117)
T ss_dssp EEECHHHHHHHHHHHHHHCTTCCEEEEEES-SCHHHH
T ss_pred EEcCHHHHHHHHHHHHHhCCCCeEEEcCCC-Cchhhh
Confidence 566666789999999999999999999998 664555
No 139
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=20.96 E-value=3.1e+02 Score=23.66 Aligned_cols=64 Identities=9% Similarity=0.120 Sum_probs=32.4
Q ss_pred CCCcceEEEEcCC--CCcHHHHHHHHHHHHHcCCCeeEEEEEecCcccCCcHHHHHHH--HhcCceeeccc
Q 018224 26 DGSPRAVTLIPGD--GIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSI--RKNKVCLKGGL 92 (359)
Q Consensus 26 ~~~~~~I~vi~GD--GIGpEV~~~a~~vl~~~~~~ie~~~~~~g~~~~~lp~et~~~~--~~~da~l~G~~ 92 (359)
.+++++|+++-.+ --..++...+.+.++..|..+.+ ++..... ..-.+.++.+ ++.|+++..+.
T Consensus 5 ~~~~~~Igvi~~~~~~~~~~~~~gi~~~~~~~g~~~~~--~~~~~~~-~~~~~~~~~l~~~~vdgiI~~~~ 72 (288)
T 2qu7_A 5 TGRSNIIAFIVPDQNPFFTEVLTEISHECQKHHLHVAV--ASSEENE-DKQQDLIETFVSQNVSAIILVPV 72 (288)
T ss_dssp --CEEEEEEEESSCCHHHHHHHHHHHHHHGGGTCEEEE--EECTTCH-HHHHHHHHHHHHTTEEEEEECCS
T ss_pred cCCCCEEEEEECCCCchHHHHHHHHHHHHHHCCCEEEE--EeCCCCH-HHHHHHHHHHHHcCccEEEEecC
Confidence 3467889998544 22345666666666666765544 3332210 0112234443 35677777654
No 140
>4ef1_A Pheromone COB1/lipoprotein, YAEC family; periplasmic methionine binding protein, NLPA lipoprotein, ST genomics; 1.90A {Enterococcus faecalis} PDB: 4ef2_A*
Probab=20.69 E-value=84 Score=28.80 Aligned_cols=57 Identities=16% Similarity=0.101 Sum_probs=42.7
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHHHHHcCCCeeEEEEEecCcccCCcHHHHHHHHhcCceeecc
Q 018224 28 SPRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIYFEKYEVHGDMKRVPQQVLDSIRKNKVCLKGG 91 (359)
Q Consensus 28 ~~~~I~vi~GDGIGpEV~~~a~~vl~~~~~~ie~~~~~~g~~~~~lp~et~~~~~~~da~l~G~ 91 (359)
+..+|++.||. -.|+++.+.+.|+..|++++|.+|.=+. .|.+++.+ .+-|+.+++-
T Consensus 4 ~~i~VG~~~~p--~~~i~~~v~~~l~k~Gi~veiv~F~dy~----~pN~AL~~-G~iD~n~fQh 60 (246)
T 4ef1_A 4 SVLKVGASPVP--HAEILEHVKPLLEKEGVKLEVTTYTDYV----LPNKALES-GDIDANYFQH 60 (246)
T ss_dssp EEEEEEECTTT--HHHHHHHHHHHHHHTTEEEEEEECSSSS----HHHHHHHH-TSCSEEEEEE
T ss_pred cEEEEEEeCCC--hHHHHHHHHHHHHhcCCEEEEEEeCCch----hHHHHHHC-CCCCEEecCC
Confidence 35789999873 4579999999999999999998876543 47766654 5678877654
No 141
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=20.12 E-value=2e+02 Score=25.60 Aligned_cols=62 Identities=6% Similarity=-0.064 Sum_probs=36.0
Q ss_pred HHHHHHHhcCCCcEEEEEcCCchhhchHHHHHHHHHHHhhCC---ceeeceeeHhHHHHHHHhCCCCccEEEeCCcchhh
Q 018224 175 YAFEYAYLNYRKKVTAVHKANIMKLADGLFLESCREVATKYP---SIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNL 251 (359)
Q Consensus 175 ~AFe~A~~r~~~~Vt~v~KaNvl~~tdglf~~~~~eva~eyp---dI~~~~~~vD~~~~~Lv~~P~~fdViv~~NlfGDI 251 (359)
.+..+|++.+ .+|+.++-+- -..+.+++..++.+ .|++... |.. .+ ++.||+|++.+.+..+
T Consensus 86 ~~~~la~~~~-~~v~gvD~s~-------~~~~~a~~~~~~~~~~~~v~~~~~--d~~--~~---~~~fD~v~~~~~~~~~ 150 (302)
T 3hem_A 86 TMRHAVAEYD-VNVIGLTLSE-------NQYAHDKAMFDEVDSPRRKEVRIQ--GWE--EF---DEPVDRIVSLGAFEHF 150 (302)
T ss_dssp HHHHHHHHHC-CEEEEEECCH-------HHHHHHHHHHHHSCCSSCEEEEEC--CGG--GC---CCCCSEEEEESCGGGT
T ss_pred HHHHHHHhCC-CEEEEEECCH-------HHHHHHHHHHHhcCCCCceEEEEC--CHH--Hc---CCCccEEEEcchHHhc
Confidence 4555666655 6799998432 22345555444432 3444433 322 22 7899999999887554
Done!