Query 018226
Match_columns 359
No_of_seqs 181 out of 1827
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 07:12:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018226.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018226hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00165 aspartyl protease; Pr 100.0 9.1E-55 2E-59 426.2 31.4 288 29-328 63-362 (482)
2 cd06098 phytepsin Phytepsin, a 100.0 1.4E-51 3.1E-56 388.0 27.0 271 80-359 1-277 (317)
3 cd05478 pepsin_A Pepsin A, asp 100.0 6.9E-51 1.5E-55 383.5 27.7 271 80-359 1-281 (317)
4 cd05490 Cathepsin_D2 Cathepsin 100.0 7.6E-51 1.6E-55 384.6 27.6 273 84-358 1-284 (325)
5 cd05486 Cathespin_E Cathepsin 100.0 1.1E-50 2.3E-55 382.0 25.8 266 90-358 1-275 (316)
6 cd05485 Cathepsin_D_like Cathe 100.0 4E-50 8.7E-55 379.9 27.3 277 80-359 2-289 (329)
7 cd05477 gastricsin Gastricsins 100.0 5.7E-50 1.2E-54 377.5 27.7 266 87-359 1-276 (318)
8 cd05487 renin_like Renin stimu 100.0 6.9E-50 1.5E-54 378.1 27.9 274 82-358 1-284 (326)
9 cd05488 Proteinase_A_fungi Fun 100.0 6.3E-50 1.4E-54 377.4 27.4 269 80-358 1-279 (320)
10 PTZ00147 plasmepsin-1; Provisi 100.0 2.9E-49 6.4E-54 384.6 30.7 273 76-358 126-410 (453)
11 PTZ00013 plasmepsin 4 (PM4); P 100.0 3.8E-48 8.2E-53 376.2 30.8 258 76-342 125-394 (450)
12 cd06097 Aspergillopepsin_like 100.0 6.3E-45 1.4E-49 336.8 24.9 233 90-330 1-245 (278)
13 PF00026 Asp: Eukaryotic aspar 100.0 4.9E-45 1.1E-49 343.2 20.2 266 89-358 1-276 (317)
14 cd05473 beta_secretase_like Be 100.0 2.1E-41 4.5E-46 324.8 23.7 233 88-328 2-261 (364)
15 KOG1339 Aspartyl protease [Pos 100.0 2.4E-41 5.2E-46 327.5 22.9 241 78-328 35-314 (398)
16 PLN03146 aspartyl protease fam 100.0 1.8E-40 4E-45 323.4 23.1 240 86-341 81-377 (431)
17 cd05471 pepsin_like Pepsin-lik 100.0 1.4E-39 3E-44 301.0 27.3 236 90-327 1-245 (283)
18 cd06096 Plasmepsin_5 Plasmepsi 100.0 9.7E-40 2.1E-44 308.7 21.2 236 88-344 2-277 (326)
19 cd05474 SAP_like SAPs, pepsin- 100.0 7.1E-39 1.5E-43 298.7 22.9 232 89-358 2-258 (295)
20 cd05472 cnd41_like Chloroplast 100.0 2.1E-38 4.6E-43 296.2 17.9 229 89-358 1-259 (299)
21 cd05476 pepsin_A_like_plant Ch 100.0 1.7E-36 3.7E-41 278.6 18.1 210 89-358 1-226 (265)
22 cd05475 nucellin_like Nucellin 100.0 3.5E-35 7.6E-40 270.9 20.0 185 89-308 2-196 (273)
23 cd05489 xylanase_inhibitor_I_l 100.0 1.7E-30 3.7E-35 248.1 18.7 211 96-317 2-257 (362)
24 cd05470 pepsin_retropepsin_lik 99.9 1.3E-23 2.8E-28 166.7 13.1 108 92-200 1-109 (109)
25 PF14543 TAXi_N: Xylanase inhi 99.9 8.8E-22 1.9E-26 167.6 14.1 136 90-248 1-164 (164)
26 cd05483 retropepsin_like_bacte 98.2 4.8E-06 1E-10 63.6 6.7 92 89-202 2-94 (96)
27 PF14541 TAXi_C: Xylanase inhi 98.0 1.2E-05 2.5E-10 68.2 6.0 50 268-317 1-57 (161)
28 TIGR02281 clan_AA_DTGA clan AA 97.4 0.0012 2.6E-08 53.0 9.0 101 80-202 2-103 (121)
29 PF13650 Asp_protease_2: Aspar 96.9 0.0075 1.6E-07 45.0 8.6 88 92-201 1-89 (90)
30 PF11925 DUF3443: Protein of u 96.2 0.064 1.4E-06 50.6 11.2 197 90-306 24-272 (370)
31 COG3577 Predicted aspartyl pro 96.1 0.083 1.8E-06 45.7 10.4 91 76-181 92-183 (215)
32 cd05479 RP_DDI RP_DDI; retrope 95.4 0.13 2.9E-06 41.3 8.8 91 87-202 14-107 (124)
33 cd05484 retropepsin_like_LTR_2 94.9 0.2 4.4E-06 37.7 8.1 74 90-181 1-77 (91)
34 cd06095 RP_RTVL_H_like Retrope 93.7 0.43 9.2E-06 35.6 7.5 81 93-202 2-84 (86)
35 PF07966 A1_Propeptide: A1 Pro 93.2 0.05 1.1E-06 31.7 1.3 25 30-54 1-25 (29)
36 PF13975 gag-asp_proteas: gag- 88.9 0.78 1.7E-05 32.9 4.2 33 87-121 6-38 (72)
37 PF00077 RVP: Retroviral aspar 81.9 2.1 4.5E-05 32.5 3.9 29 91-121 7-35 (100)
38 PF13650 Asp_protease_2: Aspar 81.7 2.3 5.1E-05 31.2 4.0 29 276-311 3-31 (90)
39 TIGR02281 clan_AA_DTGA clan AA 77.6 3.6 7.9E-05 32.8 4.1 37 265-311 8-44 (121)
40 PF13975 gag-asp_proteas: gag- 77.5 4.9 0.00011 28.7 4.3 29 276-311 13-41 (72)
41 PF07172 GRP: Glycine rich pro 77.3 1.6 3.5E-05 33.2 1.8 24 3-26 1-24 (95)
42 cd05483 retropepsin_like_bacte 73.1 6.2 0.00013 29.2 4.2 30 276-312 7-36 (96)
43 cd05484 retropepsin_like_LTR_2 72.5 6.3 0.00014 29.4 4.0 31 276-313 5-35 (91)
44 cd05482 HIV_retropepsin_like R 71.1 5.8 0.00013 29.7 3.5 26 93-120 2-27 (87)
45 cd06095 RP_RTVL_H_like Retrope 67.7 7.7 0.00017 28.7 3.6 29 276-311 3-31 (86)
46 cd05479 RP_DDI RP_DDI; retrope 63.8 10 0.00022 30.3 3.7 29 276-311 21-49 (124)
47 PRK14758 hypothetical protein; 62.8 10 0.00022 21.2 2.4 22 3-24 1-22 (27)
48 PF09668 Asp_protease: Asparty 59.9 14 0.0003 29.6 3.9 76 88-179 23-100 (124)
49 PF12384 Peptidase_A2B: Ty3 tr 58.5 13 0.00029 31.2 3.6 29 91-119 34-62 (177)
50 PF08284 RVP_2: Retroviral asp 55.9 83 0.0018 25.5 7.9 30 88-119 20-49 (135)
51 TIGR03698 clan_AA_DTGF clan AA 52.9 11 0.00023 29.3 2.1 23 289-311 16-39 (107)
52 PF00077 RVP: Retroviral aspar 52.5 14 0.00029 27.9 2.6 29 275-310 9-37 (100)
53 COG3577 Predicted aspartyl pro 49.1 45 0.00098 29.2 5.4 35 275-316 109-143 (215)
54 PF09668 Asp_protease: Asparty 45.8 28 0.0006 27.9 3.5 30 275-311 28-57 (124)
55 COG5550 Predicted aspartyl pro 45.8 14 0.0003 29.5 1.7 23 291-313 28-51 (125)
56 COG4714 Uncharacterized membra 45.4 20 0.00043 31.8 2.8 26 1-26 1-26 (303)
57 TIGR01165 cbiN cobalt transpor 40.5 29 0.00064 26.0 2.6 25 1-25 1-25 (91)
58 cd05481 retropepsin_like_LTR_1 39.0 37 0.00079 25.6 3.1 23 290-312 11-33 (93)
59 TIGR03698 clan_AA_DTGF clan AA 38.6 39 0.00085 26.1 3.3 66 92-173 2-73 (107)
60 cd06094 RP_Saci_like RP_Saci_l 38.0 1.4E+02 0.003 22.5 5.9 22 101-122 8-29 (89)
61 PRK02710 plastocyanin; Provisi 28.1 83 0.0018 24.8 3.6 33 3-35 1-35 (119)
62 PF12384 Peptidase_A2B: Ty3 tr 27.6 68 0.0015 27.1 3.1 29 287-315 43-71 (177)
63 cd05471 pepsin_like Pepsin-lik 24.9 97 0.0021 27.8 4.0 44 78-121 170-221 (283)
64 PRK10081 entericidin B membran 23.5 86 0.0019 20.6 2.3 21 3-23 1-22 (48)
65 PF05984 Cytomega_UL20A: Cytom 23.5 76 0.0016 23.3 2.3 8 3-10 1-8 (100)
66 PF08284 RVP_2: Retroviral asp 22.3 93 0.002 25.2 3.0 24 288-311 31-54 (135)
67 PRK15249 fimbrial chaperone pr 21.8 2.4E+02 0.0052 25.5 5.9 17 77-93 45-61 (253)
68 cd00303 retropepsin_like Retro 20.1 1E+02 0.0022 20.9 2.6 21 93-115 2-22 (92)
No 1
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=9.1e-55 Score=426.24 Aligned_cols=288 Identities=35% Similarity=0.617 Sum_probs=240.1
Q ss_pred ceEEEceeeccchhhhhhhhcccccccchhhhc--cccccccCCCCCCCCceeEeeeecCCceEEEEEEecCCCceEEEE
Q 018226 29 GLYRIGLKKRKFDLNNRVAARLDSKEGESFRTS--IRKYSLRGNLGESGDADIVALKNYMDAQYFGEIGIGTPPQNFTVI 106 (359)
Q Consensus 29 ~~~~ipl~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~n~~~~~y~~~i~iGtP~q~~~v~ 106 (359)
.++|+||+|.++.|+.+.+.... .. +.+. .|.|...+. ........+||.|+.|.+|+++|+||||||+|.|+
T Consensus 63 ~~~~i~l~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~-~~~~~~~~~~l~n~~d~~Y~~~I~IGTPpQ~f~Vv 137 (482)
T PTZ00165 63 PAHKVELHRFALLKKKRKKNSEK-GY---ISRVLTKHKYLETKD-PNGLQYLQQDLLNFHNSQYFGEIQVGTPPKSFVVV 137 (482)
T ss_pred heEEeeeEEcchHHHhhhhHHHH-Hh---hhhhhhccccccccc-cccccccceecccccCCeEEEEEEeCCCCceEEEE
Confidence 58999999988877765554110 00 0000 111111110 00013467999999999999999999999999999
Q ss_pred eeCCCCCeeeeCCCCCCCcccCCCccccCCCCCCcee--CCc---eEEEEcCCCceeeeEEEEEEEeceeEecCcEEEEE
Q 018226 107 FDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKK--NGK---SADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEA 181 (359)
Q Consensus 107 ~DTGSs~~wv~~~~C~~~~~C~~~~~f~~~~Sst~~~--~~~---~~~~~y~~gs~~G~~~~D~v~~g~~~~~~~~fg~~ 181 (359)
+||||+++||++..|. +.+|..++.|++++|+||++ .+. .+.+.|++|++.|.++.|+|++|+..+++|.||++
T Consensus 138 ~DTGSS~lWVps~~C~-~~~C~~~~~yd~s~SSTy~~~~~~~~~~~~~i~YGsGs~~G~l~~DtV~ig~l~i~~q~FG~a 216 (482)
T PTZ00165 138 FDTGSSNLWIPSKECK-SGGCAPHRKFDPKKSSTYTKLKLGDESAETYIQYGTGECVLALGKDTVKIGGLKVKHQSIGLA 216 (482)
T ss_pred EeCCCCCEEEEchhcC-cccccccCCCCccccCCcEecCCCCccceEEEEeCCCcEEEEEEEEEEEECCEEEccEEEEEE
Confidence 9999999999999997 66899999999999999998 555 67899999999999999999999999999999999
Q ss_pred EeecCccccccccccccCCCccccc---cCCCCChhhhhhcCCCCCCCeEEEEecCCCCCCCCcEEEECcCCCCCe--ee
Q 018226 182 TREPSLTFLLAKFDGILGLGFQEIS---VGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHY--KG 256 (359)
Q Consensus 182 ~~~~~~~~~~~~~~GilGLg~~~~s---~~~~~~~~~~l~~~g~i~~~~fs~~l~~~~~~~~~g~l~~Gg~d~~~~--~g 256 (359)
....+..|....+|||||||++..+ ....+|++++|++||+|++++||+||.+.. ..+|+|+|||+|++++ .|
T Consensus 217 ~~~s~~~f~~~~~DGILGLg~~~~s~~s~~~~~p~~~~l~~qgli~~~~FS~yL~~~~--~~~G~l~fGGiD~~~~~~~g 294 (482)
T PTZ00165 217 IEESLHPFADLPFDGLVGLGFPDKDFKESKKALPIVDNIKKQNLLKRNIFSFYMSKDL--NQPGSISFGSADPKYTLEGH 294 (482)
T ss_pred EeccccccccccccceeecCCCcccccccCCCCCHHHHHHHcCCcccceEEEEeccCC--CCCCEEEeCCcCHHHcCCCC
Confidence 8876655666788999999998863 345789999999999999999999998653 2379999999999877 57
Q ss_pred ceEEEecCCCCceEEEEceEEECCeEeeeecCCeeEEEccCCCCcccCHHHHHHHHHHhCCCceEEecCCcc
Q 018226 257 EHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGATGIVSQECKAV 328 (359)
Q Consensus 257 ~l~~~p~~~~~~w~v~~~~i~vg~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i~~~i~~~~~~~~~C~~~ 328 (359)
++.|+|+.+.++|+|++++|+||++.+..+..++.||+||||+++++|++++++|.+++++. .+|+++
T Consensus 295 ~i~~~Pv~~~~yW~i~l~~i~vgg~~~~~~~~~~~aIiDTGTSli~lP~~~~~~i~~~i~~~----~~C~~~ 362 (482)
T PTZ00165 295 KIWWFPVISTDYWEIEVVDILIDGKSLGFCDRKCKAAIDTGSSLITGPSSVINPLLEKIPLE----EDCSNK 362 (482)
T ss_pred ceEEEEccccceEEEEeCeEEECCEEeeecCCceEEEEcCCCccEeCCHHHHHHHHHHcCCc----cccccc
Confidence 89999999999999999999999988876667899999999999999999999999999975 599963
No 2
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=1.4e-51 Score=388.03 Aligned_cols=271 Identities=76% Similarity=1.272 Sum_probs=235.5
Q ss_pred EeeeecCCceEEEEEEecCCCceEEEEeeCCCCCeeeeCCCCCCCcccCCCccccCCCCCCceeCCceEEEEcCCCceee
Q 018226 80 VALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISG 159 (359)
Q Consensus 80 ~~l~n~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~f~~~~Sst~~~~~~~~~~~y~~gs~~G 159 (359)
+||.|+.+.+|+++|+||||||++.|++||||+++||++..|.....|..++.|+|++|+||+..+..+.+.|++|++.|
T Consensus 1 ~~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G~~~G 80 (317)
T cd06098 1 VALKNYLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYKSSKSSTYKKNGTSASIQYGTGSISG 80 (317)
T ss_pred CcccccCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCccccccCcCCcccCCCcccCCCEEEEEcCCceEEE
Confidence 47899999999999999999999999999999999999999965568998999999999999999999999999999999
Q ss_pred eEEEEEEEeceeEecCcEEEEEEeecCccccccccccccCCCccccccCCCCChhhhhhcCCCCCCCeEEEEecCCCCCC
Q 018226 160 FFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEE 239 (359)
Q Consensus 160 ~~~~D~v~~g~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~fs~~l~~~~~~~ 239 (359)
.++.|+|++|+..++++.||++....+..+....++||||||++..+.....|++++|++||+|++++||+||++..+..
T Consensus 81 ~~~~D~v~ig~~~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~ 160 (317)
T cd06098 81 FFSQDSVTVGDLVVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVEQGLVKEPVFSFWLNRNPDEE 160 (317)
T ss_pred EEEeeEEEECCEEECCEEEEEEEecCCccccccccceeccccccchhhcCCCCHHHHHHhcCCCCCCEEEEEEecCCCCC
Confidence 99999999999999999999998766555666678999999999887777788999999999999999999998764334
Q ss_pred CCcEEEECcCCCCCeeeceEEEecCCCCceEEEEceEEECCeEeeeecCCeeEEEccCCCCcccCHHHHHHHHHHhCCCc
Q 018226 240 EGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGATG 319 (359)
Q Consensus 240 ~~g~l~~Gg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~vg~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i~~~i~~~~ 319 (359)
..|+|+|||+|+++|.|+++|+|+...++|.|.+++|+||++.+..+.....++|||||+++++|++++++|.
T Consensus 161 ~~G~l~fGg~d~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aivDTGTs~~~lP~~~~~~i~------- 233 (317)
T cd06098 161 EGGELVFGGVDPKHFKGEHTYVPVTRKGYWQFEMGDVLIGGKSTGFCAGGCAAIADSGTSLLAGPTTIVTQIN------- 233 (317)
T ss_pred CCcEEEECccChhhcccceEEEecCcCcEEEEEeCeEEECCEEeeecCCCcEEEEecCCcceeCCHHHHHhhh-------
Confidence 5899999999999999999999999889999999999999998876777789999999999999999887764
Q ss_pred eEEecCCc------ccccccceeeehhhccccchhhcccccceeeC
Q 018226 320 IVSQECKA------VVSQYGEEIINMLLAKVSAKLSLRHYKKWLII 359 (359)
Q Consensus 320 ~~~~~C~~------~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (359)
|.+||+. +.+.||+..+++.++++..+. ......+|++
T Consensus 234 -~~~~C~~~~~~P~i~f~f~g~~~~l~~~~yi~~~-~~~~~~~C~~ 277 (317)
T cd06098 234 -SAVDCNSLSSMPNVSFTIGGKTFELTPEQYILKV-GEGAAAQCIS 277 (317)
T ss_pred -ccCCccccccCCcEEEEECCEEEEEChHHeEEee-cCCCCCEEec
Confidence 6789985 345788887777665443221 1123457863
No 3
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=6.9e-51 Score=383.49 Aligned_cols=271 Identities=42% Similarity=0.781 Sum_probs=237.9
Q ss_pred EeeeecCCceEEEEEEecCCCceEEEEeeCCCCCeeeeCCCCCCCcccCCCccccCCCCCCceeCCceEEEEcCCCceee
Q 018226 80 VALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISG 159 (359)
Q Consensus 80 ~~l~n~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~f~~~~Sst~~~~~~~~~~~y~~gs~~G 159 (359)
.||+|+.+.+|+++|.||||||++.|++||||+++||++..|. ...|..++.|+|++|+|++..++.+.+.|++|++.|
T Consensus 1 ~~l~n~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~-~~~c~~~~~f~~~~Sst~~~~~~~~~~~yg~gs~~G 79 (317)
T cd05478 1 EPLTNYLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCS-SQACSNHNRFNPRQSSTYQSTGQPLSIQYGTGSMTG 79 (317)
T ss_pred CccccccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCC-cccccccCcCCCCCCcceeeCCcEEEEEECCceEEE
Confidence 3899999999999999999999999999999999999999996 457988899999999999999999999999999999
Q ss_pred eEEEEEEEeceeEecCcEEEEEEeecCccccccccccccCCCccccccCCCCChhhhhhcCCCCCCCeEEEEecCCCCCC
Q 018226 160 FFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEE 239 (359)
Q Consensus 160 ~~~~D~v~~g~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~fs~~l~~~~~~~ 239 (359)
.++.|+|++|+..++++.||++....+..+.....+||||||++..+..+..|++++|++||+|++++||+||.+.. .
T Consensus 80 ~~~~D~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~--~ 157 (317)
T cd05478 80 ILGYDTVQVGGISDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATPVFDNMMSQGLVSQDLFSVYLSSNG--Q 157 (317)
T ss_pred EEeeeEEEECCEEECCEEEEEEEecCccccccccccceeeeccchhcccCCCCHHHHHHhCCCCCCCEEEEEeCCCC--C
Confidence 99999999999999999999998665432333457999999998887777788999999999999999999999863 2
Q ss_pred CCcEEEECcCCCCCeeeceEEEecCCCCceEEEEceEEECCeEeeeecCCeeEEEccCCCCcccCHHHHHHHHHHhCCC-
Q 018226 240 EGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGAT- 318 (359)
Q Consensus 240 ~~g~l~~Gg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~vg~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i~~~i~~~- 318 (359)
.+|+|+|||+|+++|.|+++|+|+....+|.|.+++++||++.+. ...+..++|||||+++++|++++++|.+++++.
T Consensus 158 ~~g~l~~Gg~d~~~~~g~l~~~p~~~~~~w~v~l~~v~v~g~~~~-~~~~~~~iiDTGts~~~lp~~~~~~l~~~~~~~~ 236 (317)
T cd05478 158 QGSVVTFGGIDPSYYTGSLNWVPVTAETYWQITVDSVTINGQVVA-CSGGCQAIVDTGTSLLVGPSSDIANIQSDIGASQ 236 (317)
T ss_pred CCeEEEEcccCHHHccCceEEEECCCCcEEEEEeeEEEECCEEEc-cCCCCEEEECCCchhhhCCHHHHHHHHHHhCCcc
Confidence 379999999999999999999999989999999999999999874 345678999999999999999999999999874
Q ss_pred ---ceEEecCCcc------cccccceeeehhhccccchhhcccccceeeC
Q 018226 319 ---GIVSQECKAV------VSQYGEEIINMLLAKVSAKLSLRHYKKWLII 359 (359)
Q Consensus 319 ---~~~~~~C~~~------~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (359)
+.|.+||+.. .+.|++..+.+++ +.|+....++|.+
T Consensus 237 ~~~~~~~~~C~~~~~~P~~~f~f~g~~~~i~~-----~~y~~~~~~~C~~ 281 (317)
T cd05478 237 NQNGEMVVNCSSISSMPDVVFTINGVQYPLPP-----SAYILQDQGSCTS 281 (317)
T ss_pred ccCCcEEeCCcCcccCCcEEEEECCEEEEECH-----HHheecCCCEEeE
Confidence 6799999953 4578777666555 4454445788863
No 4
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=7.6e-51 Score=384.56 Aligned_cols=273 Identities=49% Similarity=0.889 Sum_probs=234.6
Q ss_pred ecCCceEEEEEEecCCCceEEEEeeCCCCCeeeeCCCCCC-CcccCCCccccCCCCCCceeCCceEEEEcCCCceeeeEE
Q 018226 84 NYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYF-SIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFS 162 (359)
Q Consensus 84 n~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~-~~~C~~~~~f~~~~Sst~~~~~~~~~~~y~~gs~~G~~~ 162 (359)
|+.|.+|+++|.||||||+|.|++||||+++||++..|.. ...|..++.|+|++|+||+..++.+.+.|++|++.|.++
T Consensus 1 ~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G~~~G~~~ 80 (325)
T cd05490 1 NYMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIACWLHHKYNSSKSSTYVKNGTEFAIQYGSGSLSGYLS 80 (325)
T ss_pred CCcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCCccccCcCcCCcccCcceeeCCcEEEEEECCcEEEEEEe
Confidence 4668999999999999999999999999999999999963 247888899999999999999999999999999999999
Q ss_pred EEEEEeceeEecCcEEEEEEeecCccccccccccccCCCccccccCCCCChhhhhhcCCCCCCCeEEEEecCCCCCCCCc
Q 018226 163 EDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGG 242 (359)
Q Consensus 163 ~D~v~~g~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~fs~~l~~~~~~~~~g 242 (359)
.|+|++|+..++++.||++....+..+....++||||||++..+....+|++++|++||.|.+++||+||.+..+...+|
T Consensus 81 ~D~v~~g~~~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~FS~~L~~~~~~~~~G 160 (325)
T cd05490 81 QDTVSIGGLQVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFDNIMAQKLVEQNVFSFYLNRDPDAQPGG 160 (325)
T ss_pred eeEEEECCEEEcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCC
Confidence 99999999999999999998765544555578999999999888777789999999999999999999998754333479
Q ss_pred EEEECcCCCCCeeeceEEEecCCCCceEEEEceEEECCeEeeeecCCeeEEEccCCCCcccCHHHHHHHHHHhCCC----
Q 018226 243 EIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGAT---- 318 (359)
Q Consensus 243 ~l~~Gg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~vg~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i~~~i~~~---- 318 (359)
+|+|||+|+++|.|++.|+|+.+..+|.|++++|+||+... .+.....++|||||+++++|.+++++|.+++++.
T Consensus 161 ~l~~Gg~d~~~~~g~l~~~~~~~~~~w~v~l~~i~vg~~~~-~~~~~~~aiiDSGTt~~~~p~~~~~~l~~~~~~~~~~~ 239 (325)
T cd05490 161 ELMLGGTDPKYYTGDLHYVNVTRKAYWQIHMDQVDVGSGLT-LCKGGCEAIVDTGTSLITGPVEEVRALQKAIGAVPLIQ 239 (325)
T ss_pred EEEECccCHHHcCCceEEEEcCcceEEEEEeeEEEECCeee-ecCCCCEEEECCCCccccCCHHHHHHHHHHhCCccccC
Confidence 99999999999999999999998899999999999998743 3456679999999999999999999999999765
Q ss_pred ceEEecCCc------ccccccceeeehhhccccchhhcccccceee
Q 018226 319 GIVSQECKA------VVSQYGEEIINMLLAKVSAKLSLRHYKKWLI 358 (359)
Q Consensus 319 ~~~~~~C~~------~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (359)
+.|.++|+. +.+.||+..+++.+.++.-+... ..+.+|+
T Consensus 240 ~~~~~~C~~~~~~P~i~f~fgg~~~~l~~~~y~~~~~~-~~~~~C~ 284 (325)
T cd05490 240 GEYMIDCEKIPTLPVISFSLGGKVYPLTGEDYILKVSQ-RGTTICL 284 (325)
T ss_pred CCEEecccccccCCCEEEEECCEEEEEChHHeEEeccC-CCCCEEe
Confidence 679999995 34578888777766554332111 1345785
No 5
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=1.1e-50 Score=382.04 Aligned_cols=266 Identities=42% Similarity=0.791 Sum_probs=231.8
Q ss_pred EEEEEEecCCCceEEEEeeCCCCCeeeeCCCCCCCcccCCCccccCCCCCCceeCCceEEEEcCCCceeeeEEEEEEEec
Q 018226 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIG 169 (359)
Q Consensus 90 y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~f~~~~Sst~~~~~~~~~~~y~~gs~~G~~~~D~v~~g 169 (359)
|+++|+||||||+++|++||||+++||++..|. ...|..++.|+|++|+||+..++.+.+.|++|++.|.++.|+|+++
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~-~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~g~~~G~~~~D~v~ig 79 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCT-SQACTKHNRFQPSESSTYVSNGEAFSIQYGTGSLTGIIGIDQVTVE 79 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCC-CcccCccceECCCCCcccccCCcEEEEEeCCcEEEEEeeecEEEEC
Confidence 899999999999999999999999999999996 5689889999999999999999999999999999999999999999
Q ss_pred eeEecCcEEEEEEeecCccccccccccccCCCccccccCCCCChhhhhhcCCCCCCCeEEEEecCCCCCCCCcEEEECcC
Q 018226 170 DLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGM 249 (359)
Q Consensus 170 ~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~fs~~l~~~~~~~~~g~l~~Gg~ 249 (359)
+..++++.||++....+..+....++||||||++..+.....|++++|++||+|++++||+||++..+....|+|+|||+
T Consensus 80 ~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~L~~~~~~~~~g~l~fGg~ 159 (316)
T cd05486 80 GITVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLVELPMFSVYMSRNPNSADGGELVFGGF 159 (316)
T ss_pred CEEEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHhcCCCCCCEEEEEEccCCCCCCCcEEEEccc
Confidence 99999999999876655445556789999999998877777889999999999999999999997644345799999999
Q ss_pred CCCCeeeceEEEecCCCCceEEEEceEEECCeEeeeecCCeeEEEccCCCCcccCHHHHHHHHHHhCCC---ceEEecCC
Q 018226 250 DPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGAT---GIVSQECK 326 (359)
Q Consensus 250 d~~~~~g~l~~~p~~~~~~w~v~~~~i~vg~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i~~~i~~~---~~~~~~C~ 326 (359)
|+++|.|++.|+|+.+.++|.|.+++|+||++.+. +..+..++|||||+++++|++++++|.+.+++. +.|.+||+
T Consensus 160 d~~~~~g~l~~~pi~~~~~w~v~l~~i~v~g~~~~-~~~~~~aiiDTGTs~~~lP~~~~~~l~~~~~~~~~~~~~~~~C~ 238 (316)
T cd05486 160 DTSRFSGQLNWVPVTVQGYWQIQLDNIQVGGTVIF-CSDGCQAIVDTGTSLITGPSGDIKQLQNYIGATATDGEYGVDCS 238 (316)
T ss_pred CHHHcccceEEEECCCceEEEEEeeEEEEecceEe-cCCCCEEEECCCcchhhcCHHHHHHHHHHhCCcccCCcEEEecc
Confidence 99999999999999999999999999999998763 445679999999999999999999999999876 67999998
Q ss_pred c------ccccccceeeehhhccccchhhcccccceee
Q 018226 327 A------VVSQYGEEIINMLLAKVSAKLSLRHYKKWLI 358 (359)
Q Consensus 327 ~------~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (359)
. +.+.|++..+++.+.++..... .....+|+
T Consensus 239 ~~~~~p~i~f~f~g~~~~l~~~~y~~~~~-~~~~~~C~ 275 (316)
T cd05486 239 TLSLMPSVTFTINGIPYSLSPQAYTLEDQ-SDGGGYCS 275 (316)
T ss_pred ccccCCCEEEEECCEEEEeCHHHeEEecc-cCCCCEEe
Confidence 5 3457888777766655443211 12356886
No 6
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=4e-50 Score=379.94 Aligned_cols=277 Identities=54% Similarity=0.956 Sum_probs=239.9
Q ss_pred EeeeecCCceEEEEEEecCCCceEEEEeeCCCCCeeeeCCCCCCC-cccCCCccccCCCCCCceeCCceEEEEcCCCcee
Q 018226 80 VALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFS-IACYFHSKYRSGRSSTYKKNGKSADIHYGTGAIS 158 (359)
Q Consensus 80 ~~l~n~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~~-~~C~~~~~f~~~~Sst~~~~~~~~~~~y~~gs~~ 158 (359)
.||+|+.+..|+++|+||||+|++.|++||||+++||+|..|..+ ..|..++.|+|++|+|++..++.+.+.|++|++.
T Consensus 2 ~~~~n~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~Sst~~~~~~~~~i~Y~~g~~~ 81 (329)
T cd05485 2 EPLSNYMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNIACLLHNKYDSTKSSTYKKNGTEFAIQYGSGSLS 81 (329)
T ss_pred ccceeccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCccccCCCeECCcCCCCeEECCeEEEEEECCceEE
Confidence 479999999999999999999999999999999999999999632 3688788999999999999999999999999999
Q ss_pred eeEEEEEEEeceeEecCcEEEEEEeecCccccccccccccCCCccccccCCCCChhhhhhcCCCCCCCeEEEEecCCCCC
Q 018226 159 GFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADE 238 (359)
Q Consensus 159 G~~~~D~v~~g~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~fs~~l~~~~~~ 238 (359)
|.++.|++++++..++++.||++....+..+.....+||||||+...+.....|++.+|++||+|++++||+||.+....
T Consensus 82 G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~l~~~~~~ 161 (329)
T cd05485 82 GFLSTDTVSVGGVSVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVVPVFYNMVNQKLVDAPVFSFYLNRDPSA 161 (329)
T ss_pred EEEecCcEEECCEEECCEEEEEEEecCCccccccccceEEEcCCccccccCCCCHHHHHHhCCCCCCCEEEEEecCCCCC
Confidence 99999999999999999999999776554455556899999999988776778899999999999999999999876443
Q ss_pred CCCcEEEECcCCCCCeeeceEEEecCCCCceEEEEceEEECCeEeeeecCCeeEEEccCCCCcccCHHHHHHHHHHhCCC
Q 018226 239 EEGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGAT 318 (359)
Q Consensus 239 ~~~g~l~~Gg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~vg~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i~~~i~~~ 318 (359)
...|+|+|||+|++++.|+++|+|+.+.++|.|.++++.++++.+ +.....+||||||+++++|++++++|.+++++.
T Consensus 162 ~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~~~~i~v~~~~~--~~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~ 239 (329)
T cd05485 162 KEGGELILGGSDPKHYTGNFTYLPVTRKGYWQFKMDSVSVGEGEF--CSGGCQAIADTGTSLIAGPVDEIEKLNNAIGAK 239 (329)
T ss_pred CCCcEEEEcccCHHHcccceEEEEcCCceEEEEEeeEEEECCeee--cCCCcEEEEccCCcceeCCHHHHHHHHHHhCCc
Confidence 457999999999999999999999999999999999999999876 456678999999999999999999999999875
Q ss_pred ----ceEEecCCc------ccccccceeeehhhccccchhhcccccceeeC
Q 018226 319 ----GIVSQECKA------VVSQYGEEIINMLLAKVSAKLSLRHYKKWLII 359 (359)
Q Consensus 319 ----~~~~~~C~~------~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (359)
+.|.+||+. +.+.||+..+.+.++++.-.... ....+|++
T Consensus 240 ~~~~~~~~~~C~~~~~~p~i~f~fgg~~~~i~~~~yi~~~~~-~~~~~C~~ 289 (329)
T cd05485 240 PIIGGEYMVNCSAIPSLPDITFVLGGKSFSLTGKDYVLKVTQ-MGQTICLS 289 (329)
T ss_pred cccCCcEEEeccccccCCcEEEEECCEEeEEChHHeEEEecC-CCCCEEee
Confidence 568999996 34578888777776554433221 23467863
No 7
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=5.7e-50 Score=377.49 Aligned_cols=266 Identities=41% Similarity=0.805 Sum_probs=233.6
Q ss_pred CceEEEEEEecCCCceEEEEeeCCCCCeeeeCCCCCCCcccCCCccccCCCCCCceeCCceEEEEcCCCceeeeEEEEEE
Q 018226 87 DAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHV 166 (359)
Q Consensus 87 ~~~y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~f~~~~Sst~~~~~~~~~~~y~~gs~~G~~~~D~v 166 (359)
|..|+++|+||||||++.|++||||+++||++..|. ...|..++.|+|++|+||+..++.+.+.|++|++.|.++.|++
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~-~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~Gs~~G~~~~D~i 79 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQ-SQACTNHTKFNPSQSSTYSTNGETFSLQYGSGSLTGIFGYDTV 79 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCC-CccccccCCCCcccCCCceECCcEEEEEECCcEEEEEEEeeEE
Confidence 467999999999999999999999999999999997 5689988999999999999999999999999999999999999
Q ss_pred EeceeEecCcEEEEEEeecCccccccccccccCCCccccccCCCCChhhhhhcCCCCCCCeEEEEecCCCCCCCCcEEEE
Q 018226 167 KIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVF 246 (359)
Q Consensus 167 ~~g~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~fs~~l~~~~~~~~~g~l~~ 246 (359)
++|+..++++.||++....+..+.....+||||||++..+....++++++|+++|.|++++||+||.+.. ....|+|+|
T Consensus 80 ~~g~~~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~-~~~~g~l~f 158 (318)
T cd05477 80 TVQGIIITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQQNLLQAPIFSFYLSGQQ-GQQGGELVF 158 (318)
T ss_pred EECCEEEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHHhcCCcCCCEEEEEEcCCC-CCCCCEEEE
Confidence 9999999999999998765433444567999999999887777789999999999999999999998753 234799999
Q ss_pred CcCCCCCeeeceEEEecCCCCceEEEEceEEECCeEeeeecCCeeEEEccCCCCcccCHHHHHHHHHHhCCC----ceEE
Q 018226 247 GGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGAT----GIVS 322 (359)
Q Consensus 247 Gg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~vg~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i~~~i~~~----~~~~ 322 (359)
||+|++++.|+++|+|+.+.++|.|.+++++||++.+..+..+..+||||||+++++|++++++|++++++. +.|.
T Consensus 159 Gg~d~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~~~~~~~~ 238 (318)
T cd05477 159 GGVDNNLYTGQIYWTPVTSETYWQIGIQGFQINGQATGWCSQGCQAIVDTGTSLLTAPQQVMSTLMQSIGAQQDQYGQYV 238 (318)
T ss_pred cccCHHHcCCceEEEecCCceEEEEEeeEEEECCEEecccCCCceeeECCCCccEECCHHHHHHHHHHhCCccccCCCEE
Confidence 999999999999999999999999999999999998766666778999999999999999999999999886 7799
Q ss_pred ecCCc------ccccccceeeehhhccccchhhcccccceeeC
Q 018226 323 QECKA------VVSQYGEEIINMLLAKVSAKLSLRHYKKWLII 359 (359)
Q Consensus 323 ~~C~~------~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (359)
+||++ +.+.|++..+.+++++ +.....++|.+
T Consensus 239 ~~C~~~~~~p~l~~~f~g~~~~v~~~~-----y~~~~~~~C~~ 276 (318)
T cd05477 239 VNCNNIQNLPTLTFTINGVSFPLPPSA-----YILQNNGYCTV 276 (318)
T ss_pred EeCCccccCCcEEEEECCEEEEECHHH-----eEecCCCeEEE
Confidence 99996 3457887776666544 43334678863
No 8
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=6.9e-50 Score=378.06 Aligned_cols=274 Identities=43% Similarity=0.835 Sum_probs=236.2
Q ss_pred eeecCCceEEEEEEecCCCceEEEEeeCCCCCeeeeCCCCCCC-cccCCCccccCCCCCCceeCCceEEEEcCCCceeee
Q 018226 82 LKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFS-IACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGF 160 (359)
Q Consensus 82 l~n~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~~-~~C~~~~~f~~~~Sst~~~~~~~~~~~y~~gs~~G~ 160 (359)
|+|+.+.+|+++|+||||+|++.|++||||+++||++..|..+ ..|..++.|+|++|+||+..++.+.+.|++|++.|.
T Consensus 1 ~~~~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~SsT~~~~~~~~~~~Yg~g~~~G~ 80 (326)
T cd05487 1 LTNYLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTACVTHNLYDASDSSTYKENGTEFTIHYASGTVKGF 80 (326)
T ss_pred CcccCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcchhhcccCcCCCCCCeeeeECCEEEEEEeCCceEEEE
Confidence 5678899999999999999999999999999999999999632 478888999999999999999999999999999999
Q ss_pred EEEEEEEeceeEecCcEEEEEEeecCccccccccccccCCCccccccCCCCChhhhhhcCCCCCCCeEEEEecCCCCCCC
Q 018226 161 FSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEE 240 (359)
Q Consensus 161 ~~~D~v~~g~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~fs~~l~~~~~~~~ 240 (359)
++.|+|++++..+. +.||++.......+....++||||||++..+..+..|++++|++||.|++++||+||++..+...
T Consensus 81 ~~~D~v~~g~~~~~-~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FS~~L~~~~~~~~ 159 (326)
T cd05487 81 LSQDIVTVGGIPVT-QMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVFDNIMSQGVLKEDVFSVYYSRDSSHSL 159 (326)
T ss_pred EeeeEEEECCEEee-EEEEEEEeccCCccceeecceEEecCChhhcccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCC
Confidence 99999999998884 78999887644445556789999999988776677899999999999999999999988643345
Q ss_pred CcEEEECcCCCCCeeeceEEEecCCCCceEEEEceEEECCeEeeeecCCeeEEEccCCCCcccCHHHHHHHHHHhCCC--
Q 018226 241 GGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGAT-- 318 (359)
Q Consensus 241 ~g~l~~Gg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~vg~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i~~~i~~~-- 318 (359)
.|+|+|||+|+++|.|+++|+|+...++|+|.+++++||++.+. +..+..++|||||+++++|+++++++++++++.
T Consensus 160 ~G~l~fGg~d~~~y~g~l~~~~~~~~~~w~v~l~~i~vg~~~~~-~~~~~~aiiDSGts~~~lP~~~~~~l~~~~~~~~~ 238 (326)
T cd05487 160 GGEIVLGGSDPQHYQGDFHYINTSKTGFWQIQMKGVSVGSSTLL-CEDGCTAVVDTGASFISGPTSSISKLMEALGAKER 238 (326)
T ss_pred CcEEEECCcChhhccCceEEEECCcCceEEEEecEEEECCEEEe-cCCCCEEEECCCccchhCcHHHHHHHHHHhCCccc
Confidence 79999999999999999999999999999999999999998764 445678999999999999999999999999875
Q ss_pred -ceEEecCCc------ccccccceeeehhhccccchhhcccccceee
Q 018226 319 -GIVSQECKA------VVSQYGEEIINMLLAKVSAKLSLRHYKKWLI 358 (359)
Q Consensus 319 -~~~~~~C~~------~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (359)
+.|.+||+. +.+.||+..+++.++++.-+.. ......|+
T Consensus 239 ~~~y~~~C~~~~~~P~i~f~fgg~~~~v~~~~yi~~~~-~~~~~~C~ 284 (326)
T cd05487 239 LGDYVVKCNEVPTLPDISFHLGGKEYTLSSSDYVLQDS-DFSDKLCT 284 (326)
T ss_pred CCCEEEeccccCCCCCEEEEECCEEEEeCHHHhEEecc-CCCCCEEE
Confidence 679999996 3458888887777655543321 11245675
No 9
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=6.3e-50 Score=377.40 Aligned_cols=269 Identities=46% Similarity=0.836 Sum_probs=235.9
Q ss_pred EeeeecCCceEEEEEEecCCCceEEEEeeCCCCCeeeeCCCCCCCcccCCCccccCCCCCCceeCCceEEEEcCCCceee
Q 018226 80 VALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISG 159 (359)
Q Consensus 80 ~~l~n~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~f~~~~Sst~~~~~~~~~~~y~~gs~~G 159 (359)
+||.|+.+..|+++|+||||+|++.|++||||+++||+|..|. +..|..++.|++++|+|++..++.+.+.|++|++.|
T Consensus 1 ~~l~n~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~-~~~C~~~~~y~~~~Sst~~~~~~~~~~~y~~g~~~G 79 (320)
T cd05488 1 VPLTNYLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCG-SIACFLHSKYDSSASSTYKANGTEFKIQYGSGSLEG 79 (320)
T ss_pred CcccccCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCC-CcccCCcceECCCCCcceeeCCCEEEEEECCceEEE
Confidence 4789999999999999999999999999999999999999996 568988899999999999999999999999999999
Q ss_pred eEEEEEEEeceeEecCcEEEEEEeecCccccccccccccCCCccccccCCCCChhhhhhcCCCCCCCeEEEEecCCCCCC
Q 018226 160 FFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEE 239 (359)
Q Consensus 160 ~~~~D~v~~g~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~fs~~l~~~~~~~ 239 (359)
.++.|++++++..++++.|+++....+..+.....+||||||++..+.....|.+.+|++||+|.+++||+||++.. .
T Consensus 80 ~~~~D~v~ig~~~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~--~ 157 (320)
T cd05488 80 FVSQDTLSIGDLTIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVPPFYNMINQGLLDEPVFSFYLGSSE--E 157 (320)
T ss_pred EEEEeEEEECCEEECCEEEEEEecCCCcceeeeeeceEEecCCccccccCCCCHHHHHHhcCCCCCCEEEEEecCCC--C
Confidence 99999999999999999999998765544455577999999999887666678888999999999999999999863 2
Q ss_pred CCcEEEECcCCCCCeeeceEEEecCCCCceEEEEceEEECCeEeeeecCCeeEEEccCCCCcccCHHHHHHHHHHhCCC-
Q 018226 240 EGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGAT- 318 (359)
Q Consensus 240 ~~g~l~~Gg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~vg~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i~~~i~~~- 318 (359)
..|+|+|||+|++++.|+++|+|+...++|.|.+++|+||++.+. ..+..++|||||+++++|++++++|.+++++.
T Consensus 158 ~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~vg~~~~~--~~~~~~ivDSGtt~~~lp~~~~~~l~~~~~~~~ 235 (320)
T cd05488 158 DGGEATFGGIDESRFTGKITWLPVRRKAYWEVELEKIGLGDEELE--LENTGAAIDTGTSLIALPSDLAEMLNAEIGAKK 235 (320)
T ss_pred CCcEEEECCcCHHHcCCceEEEeCCcCcEEEEEeCeEEECCEEec--cCCCeEEEcCCcccccCCHHHHHHHHHHhCCcc
Confidence 379999999999999999999999988999999999999998774 34568999999999999999999999999875
Q ss_pred ---ceEEecCCc------ccccccceeeehhhccccchhhcccccceee
Q 018226 319 ---GIVSQECKA------VVSQYGEEIINMLLAKVSAKLSLRHYKKWLI 358 (359)
Q Consensus 319 ---~~~~~~C~~------~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (359)
+.|.+||++ +.+.|++..+.+++. .|.....++|.
T Consensus 236 ~~~~~~~~~C~~~~~~P~i~f~f~g~~~~i~~~-----~y~~~~~g~C~ 279 (320)
T cd05488 236 SWNGQYTVDCSKVDSLPDLTFNFDGYNFTLGPF-----DYTLEVSGSCI 279 (320)
T ss_pred ccCCcEEeeccccccCCCEEEEECCEEEEECHH-----HheecCCCeEE
Confidence 679999985 345788766655554 44434456786
No 10
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=2.9e-49 Score=384.63 Aligned_cols=273 Identities=31% Similarity=0.580 Sum_probs=228.7
Q ss_pred CceeEeeeecCCceEEEEEEecCCCceEEEEeeCCCCCeeeeCCCCCCCcccCCCccccCCCCCCceeCCceEEEEcCCC
Q 018226 76 DADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTG 155 (359)
Q Consensus 76 ~~~~~~l~n~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~f~~~~Sst~~~~~~~~~~~y~~g 155 (359)
....+||.|+.+.+|+++|+||||||+|.|++||||+++||+|..|. ...|..++.|+|++|+||+..++.+.+.|++|
T Consensus 126 ~~~~v~L~n~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~-~~~C~~~~~yd~s~SsT~~~~~~~f~i~Yg~G 204 (453)
T PTZ00147 126 EFDNVELKDLANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCT-TEGCETKNLYDSSKSKTYEKDGTKVEMNYVSG 204 (453)
T ss_pred CCCeeeccccCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCC-cccccCCCccCCccCcceEECCCEEEEEeCCC
Confidence 45679999999999999999999999999999999999999999996 56899899999999999999999999999999
Q ss_pred ceeeeEEEEEEEeceeEecCcEEEEEEeecCc--cccccccccccCCCccccccCCCCChhhhhhcCCCCCCCeEEEEec
Q 018226 156 AISGFFSEDHVKIGDLVVKDQEFIEATREPSL--TFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFN 233 (359)
Q Consensus 156 s~~G~~~~D~v~~g~~~~~~~~fg~~~~~~~~--~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~fs~~l~ 233 (359)
++.|.++.|+|++|+.+++ ..|+++....+. .+....++||||||++..+.....|++++|++||.|++++||+||+
T Consensus 205 svsG~~~~DtVtiG~~~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~~~p~~~~L~~qg~I~~~vFS~~L~ 283 (453)
T PTZ00147 205 TVSGFFSKDLVTIGNLSVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGSVDPYVVELKNQNKIEQAVFTFYLP 283 (453)
T ss_pred CEEEEEEEEEEEECCEEEE-EEEEEEEeccCcccccccccccceecccCCccccccCCCHHHHHHHcCCCCccEEEEEec
Confidence 9999999999999999988 468877655431 2334568999999999887777789999999999999999999998
Q ss_pred CCCCCCCCcEEEECcCCCCCeeeceEEEecCCCCceEEEEceEEECCeEeeeecCCeeEEEccCCCCcccCHHHHHHHHH
Q 018226 234 RNADEEEGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNH 313 (359)
Q Consensus 234 ~~~~~~~~g~l~~Gg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~vg~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i~~ 313 (359)
+.. ...|+|+|||+|+++|.|++.|+|+.+..+|.|.++ +.+|+.. .....|||||||+++++|+++++++.+
T Consensus 284 ~~~--~~~G~L~fGGiD~~ky~G~l~y~pl~~~~~W~V~l~-~~vg~~~----~~~~~aIiDSGTsli~lP~~~~~ai~~ 356 (453)
T PTZ00147 284 PED--KHKGYLTIGGIEERFYEGPLTYEKLNHDLYWQVDLD-VHFGNVS----SEKANVIVDSGTSVITVPTEFLNKFVE 356 (453)
T ss_pred CCC--CCCeEEEECCcChhhcCCceEEEEcCCCceEEEEEE-EEECCEe----cCceeEEECCCCchhcCCHHHHHHHHH
Confidence 753 237999999999999999999999998899999998 4777653 346789999999999999999999999
Q ss_pred HhCCC-----ceEEecCCc-----ccccccceeeehhhccccchhhcccccceee
Q 018226 314 AIGAT-----GIVSQECKA-----VVSQYGEEIINMLLAKVSAKLSLRHYKKWLI 358 (359)
Q Consensus 314 ~i~~~-----~~~~~~C~~-----~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (359)
++++. +.|.++|+. +.+.|++..+.++++++.... ......+|+
T Consensus 357 ~l~~~~~~~~~~y~~~C~~~~lP~~~f~f~g~~~~L~p~~yi~~~-~~~~~~~C~ 410 (453)
T PTZ00147 357 SLDVFKVPFLPLYVTTCNNTKLPTLEFRSPNKVYTLEPEYYLQPI-EDIGSALCM 410 (453)
T ss_pred HhCCeecCCCCeEEEeCCCCCCCeEEEEECCEEEEECHHHheecc-ccCCCcEEE
Confidence 99764 568899995 233566655555544332110 011346786
No 11
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=3.8e-48 Score=376.16 Aligned_cols=258 Identities=32% Similarity=0.659 Sum_probs=221.6
Q ss_pred CceeEeeeecCCceEEEEEEecCCCceEEEEeeCCCCCeeeeCCCCCCCcccCCCccccCCCCCCceeCCceEEEEcCCC
Q 018226 76 DADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTG 155 (359)
Q Consensus 76 ~~~~~~l~n~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~f~~~~Sst~~~~~~~~~~~y~~g 155 (359)
....++|.|+.+.+|+++|+||||||+|.|++||||+++||++..|. ...|..++.|+|++|+|++..++.+.+.|++|
T Consensus 125 ~~~~~~l~d~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~-~~~C~~~~~yd~s~SsT~~~~~~~~~i~YG~G 203 (450)
T PTZ00013 125 ENDVIELDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCD-SIGCSIKNLYDSSKSKSYEKDGTKVDITYGSG 203 (450)
T ss_pred CCCceeeeccCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCC-ccccccCCCccCccCcccccCCcEEEEEECCc
Confidence 45678999999999999999999999999999999999999999996 56899899999999999999999999999999
Q ss_pred ceeeeEEEEEEEeceeEecCcEEEEEEeecC--ccccccccccccCCCccccccCCCCChhhhhhcCCCCCCCeEEEEec
Q 018226 156 AISGFFSEDHVKIGDLVVKDQEFIEATREPS--LTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFN 233 (359)
Q Consensus 156 s~~G~~~~D~v~~g~~~~~~~~fg~~~~~~~--~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~fs~~l~ 233 (359)
++.|.++.|+|++|+.+++ +.|+++..... ..+....++||||||++..+.....|++++|++||+|++++||+||+
T Consensus 204 sv~G~~~~Dtv~iG~~~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~p~~~~L~~qg~I~~~vFS~~L~ 282 (450)
T PTZ00013 204 TVKGFFSKDLVTLGHLSMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYLP 282 (450)
T ss_pred eEEEEEEEEEEEECCEEEc-cEEEEEEeccccccceecccccceecccCCccccccCCCHHHHHHhccCcCCcEEEEEec
Confidence 9999999999999999987 57777765432 22344568999999999887767789999999999999999999998
Q ss_pred CCCCCCCCcEEEECcCCCCCeeeceEEEecCCCCceEEEEceEEECCeEeeeecCCeeEEEccCCCCcccCHHHHHHHHH
Q 018226 234 RNADEEEGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNH 313 (359)
Q Consensus 234 ~~~~~~~~g~l~~Gg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~vg~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i~~ 313 (359)
+.. ...|+|+|||+|+++|.|+++|+|+.+..+|.|.++ +.+|.... ....|++||||+++++|+++++++++
T Consensus 283 ~~~--~~~G~L~fGGiD~~~y~G~L~y~pv~~~~yW~I~l~-v~~G~~~~----~~~~aIlDSGTSli~lP~~~~~~i~~ 355 (450)
T PTZ00013 283 VHD--VHAGYLTIGGIEEKFYEGNITYEKLNHDLYWQIDLD-VHFGKQTM----QKANVIVDSGTTTITAPSEFLNKFFA 355 (450)
T ss_pred CCC--CCCCEEEECCcCccccccceEEEEcCcCceEEEEEE-EEECceec----cccceEECCCCccccCCHHHHHHHHH
Confidence 653 237999999999999999999999998899999998 66765432 45689999999999999999999999
Q ss_pred HhCCC-----ceEEecCCc-----ccccccceeeehhhc
Q 018226 314 AIGAT-----GIVSQECKA-----VVSQYGEEIINMLLA 342 (359)
Q Consensus 314 ~i~~~-----~~~~~~C~~-----~~~~fg~~~~~~~~~ 342 (359)
++++. +.|.++|+. +.+.|++..+.+.++
T Consensus 356 ~l~~~~~~~~~~y~~~C~~~~lP~i~F~~~g~~~~L~p~ 394 (450)
T PTZ00013 356 NLNVIKVPFLPFYVTTCDNKEMPTLEFKSANNTYTLEPE 394 (450)
T ss_pred HhCCeecCCCCeEEeecCCCCCCeEEEEECCEEEEECHH
Confidence 99764 568899985 234565655555443
No 12
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=6.3e-45 Score=336.81 Aligned_cols=233 Identities=34% Similarity=0.520 Sum_probs=203.2
Q ss_pred EEEEEEecCCCceEEEEeeCCCCCeeeeCCCCCCCcccCCCccccCCCCCCcee-CCceEEEEcCCCc-eeeeEEEEEEE
Q 018226 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKK-NGKSADIHYGTGA-ISGFFSEDHVK 167 (359)
Q Consensus 90 y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~f~~~~Sst~~~-~~~~~~~~y~~gs-~~G~~~~D~v~ 167 (359)
|+++|+||||||++.|++||||+++||+++.|. ...|..++.|++++|+|+.. .++++.+.|++|+ +.|.++.|+|.
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~-~~~~~~~~~y~~~~Sst~~~~~~~~~~i~Y~~G~~~~G~~~~D~v~ 79 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETP-AAQQGGHKLYDPSKSSTAKLLPGATWSISYGDGSSASGIVYTDTVS 79 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCC-chhhccCCcCCCccCccceecCCcEEEEEeCCCCeEEEEEEEEEEE
Confidence 789999999999999999999999999999997 33566677899999999987 4789999999997 89999999999
Q ss_pred eceeEecCcEEEEEEeecCccccccccccccCCCccccccC---CCCChhhhhhcCCCCCCCeEEEEecCCCCCCCCcEE
Q 018226 168 IGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVG---KAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEI 244 (359)
Q Consensus 168 ~g~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~---~~~~~~~~l~~~g~i~~~~fs~~l~~~~~~~~~g~l 244 (359)
+|+..++++.||++.......+....++||||||++..+.. ...+++++|.+++. +++||+||.+. ..|+|
T Consensus 80 ig~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~~~--~~~Fs~~l~~~----~~G~l 153 (278)
T cd06097 80 IGGVEVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFENALSSLD--APLFTADLRKA----APGFY 153 (278)
T ss_pred ECCEEECCeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHHHHHhcc--CceEEEEecCC----CCcEE
Confidence 99999999999999876543455567899999999876542 34678999999864 89999999863 27999
Q ss_pred EECcCCCCCeeeceEEEecCC-CCceEEEEceEEECCeEeeeecCCeeEEEccCCCCcccCHHHHHHHHHHh-CCC----
Q 018226 245 VFGGMDPDHYKGEHTYVPVTQ-KGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAI-GAT---- 318 (359)
Q Consensus 245 ~~Gg~d~~~~~g~l~~~p~~~-~~~w~v~~~~i~vg~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i~~~i-~~~---- 318 (359)
+|||+|+++|.|+++|+|+.. .++|.|++++|.||++... ......++|||||+++++|++++++|++++ ++.
T Consensus 154 ~fGg~D~~~~~g~l~~~pi~~~~~~w~v~l~~i~v~~~~~~-~~~~~~~iiDSGTs~~~lP~~~~~~l~~~l~g~~~~~~ 232 (278)
T cd06097 154 TFGYIDESKYKGEISWTPVDNSSGFWQFTSTSYTVGGDAPW-SRSGFSAIADTGTTLILLPDAIVEAYYSQVPGAYYDSE 232 (278)
T ss_pred EEeccChHHcCCceEEEEccCCCcEEEEEEeeEEECCccee-ecCCceEEeecCCchhcCCHHHHHHHHHhCcCCcccCC
Confidence 999999999999999999976 7899999999999998542 456789999999999999999999999999 443
Q ss_pred -ceEEecCCcccc
Q 018226 319 -GIVSQECKAVVS 330 (359)
Q Consensus 319 -~~~~~~C~~~~~ 330 (359)
+.|.+||++..+
T Consensus 233 ~~~~~~~C~~~~P 245 (278)
T cd06097 233 YGGWVFPCDTTLP 245 (278)
T ss_pred CCEEEEECCCCCC
Confidence 679999997544
No 13
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=4.9e-45 Score=343.22 Aligned_cols=266 Identities=35% Similarity=0.652 Sum_probs=228.8
Q ss_pred eEEEEEEecCCCceEEEEeeCCCCCeeeeCCCCCCCcccCCCccccCCCCCCceeCCceEEEEcCCCceeeeEEEEEEEe
Q 018226 89 QYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKI 168 (359)
Q Consensus 89 ~y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~f~~~~Sst~~~~~~~~~~~y~~gs~~G~~~~D~v~~ 168 (359)
+|+++|+||||+|+++|++||||+++||+++.|..+..|.....|++++|+|++..++.+.+.|++|+++|.++.|+|.+
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~~~~~~~~y~~~~S~t~~~~~~~~~~~y~~g~~~G~~~~D~v~i 80 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCSSCASSGFYNPSKSSTFSNQGKPFSISYGDGSVSGNLVSDTVSI 80 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSHTHHCTSC-BBGGGSTTEEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccccccccccccccccccccccccceeeeeeeccCcccccccccceEee
Confidence 59999999999999999999999999999999974446788899999999999999999999999999999999999999
Q ss_pred ceeEecCcEEEEEEeecCccccccccccccCCCccccccCC-CCChhhhhhcCCCCCCCeEEEEecCCCCCCCCcEEEEC
Q 018226 169 GDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGK-AVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFG 247 (359)
Q Consensus 169 g~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~-~~~~~~~l~~~g~i~~~~fs~~l~~~~~~~~~g~l~~G 247 (359)
++..++++.||++....+..+.....+||||||++..+... .++++++|+++|+|++++||++|++.. ...|+|+||
T Consensus 81 g~~~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g~i~~~~fsl~l~~~~--~~~g~l~~G 158 (317)
T PF00026_consen 81 GGLTIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQGLISSNVFSLYLNPSD--SQNGSLTFG 158 (317)
T ss_dssp TTEEEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTTSSSSSEEEEEEESTT--SSEEEEEES
T ss_pred eeccccccceeccccccccccccccccccccccCCcccccccCCcceecchhhccccccccceeeeecc--cccchheee
Confidence 99999999999999876554566788999999988776554 788999999999999999999999975 347999999
Q ss_pred cCCCCCeeeceEEEecCCCCceEEEEceEEECCeEeeeecCCeeEEEccCCCCcccCHHHHHHHHHHhCCC---ceEEec
Q 018226 248 GMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGAT---GIVSQE 324 (359)
Q Consensus 248 g~d~~~~~g~l~~~p~~~~~~w~v~~~~i~vg~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i~~~i~~~---~~~~~~ 324 (359)
|+|+++|+|+++|+|+...++|.+.+++|.+++... .......++||||++++++|++++++|++++++. +.|.+|
T Consensus 159 g~d~~~~~g~~~~~~~~~~~~w~v~~~~i~i~~~~~-~~~~~~~~~~Dtgt~~i~lp~~~~~~i~~~l~~~~~~~~~~~~ 237 (317)
T PF00026_consen 159 GYDPSKYDGDLVWVPLVSSGYWSVPLDSISIGGESV-FSSSGQQAILDTGTSYIYLPRSIFDAIIKALGGSYSDGVYSVP 237 (317)
T ss_dssp SEEGGGEESEEEEEEBSSTTTTEEEEEEEEETTEEE-EEEEEEEEEEETTBSSEEEEHHHHHHHHHHHTTEEECSEEEEE
T ss_pred ccccccccCceeccCccccccccccccccccccccc-ccccceeeecccccccccccchhhHHHHhhhcccccceeEEEe
Confidence 999999999999999999999999999999999933 2455678999999999999999999999999987 779999
Q ss_pred CCcc------cccccceeeehhhccccchhhcccccceee
Q 018226 325 CKAV------VSQYGEEIINMLLAKVSAKLSLRHYKKWLI 358 (359)
Q Consensus 325 C~~~------~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (359)
|+.. .+.|++..+++++.++....... ....|.
T Consensus 238 c~~~~~~p~l~f~~~~~~~~i~~~~~~~~~~~~-~~~~C~ 276 (317)
T PF00026_consen 238 CNSTDSLPDLTFTFGGVTFTIPPSDYIFKIEDG-NGGYCY 276 (317)
T ss_dssp TTGGGGSEEEEEEETTEEEEEEHHHHEEEESST-TSSEEE
T ss_pred cccccccceEEEeeCCEEEEecchHhccccccc-ccceeE
Confidence 9976 45788877777665544333221 222675
No 14
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=2.1e-41 Score=324.82 Aligned_cols=233 Identities=30% Similarity=0.471 Sum_probs=189.9
Q ss_pred ceEEEEEEecCCCceEEEEeeCCCCCeeeeCCCCCCCcccCCCccccCCCCCCceeCCceEEEEcCCCceeeeEEEEEEE
Q 018226 88 AQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVK 167 (359)
Q Consensus 88 ~~y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~f~~~~Sst~~~~~~~~~~~y~~gs~~G~~~~D~v~ 167 (359)
..|+++|.||||+|+|.|+|||||+++||+|..|. ..++.|+|++|+||+..++.+.+.|++|++.|.++.|+|+
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~~-----~~~~~f~~~~SsT~~~~~~~~~i~Yg~Gs~~G~~~~D~v~ 76 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPHP-----FIHTYFHRELSSTYRDLGKGVTVPYTQGSWEGELGTDLVS 76 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcCCCc-----cccccCCchhCcCcccCCceEEEEECcceEEEEEEEEEEE
Confidence 46999999999999999999999999999998773 3467899999999999999999999999999999999999
Q ss_pred eceeEecCcEE----EEEEeecCccccccccccccCCCcccccc--CCCCChhhhhhcCCCCCCCeEEEEecCCC-----
Q 018226 168 IGDLVVKDQEF----IEATREPSLTFLLAKFDGILGLGFQEISV--GKAVPVWYNMVNQGLVNEPVFSFWFNRNA----- 236 (359)
Q Consensus 168 ~g~~~~~~~~f----g~~~~~~~~~~~~~~~~GilGLg~~~~s~--~~~~~~~~~l~~~g~i~~~~fs~~l~~~~----- 236 (359)
+++. .++.| ++.............++||||||++.++. ....|++++|++|+.+ .++||+||+...
T Consensus 77 ig~~--~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q~~~-~~~FS~~l~~~~~~~~~ 153 (364)
T cd05473 77 IPKG--PNVTFRANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDSLVKQTGI-PDVFSLQMCGAGLPVNG 153 (364)
T ss_pred ECCC--CccceEEeeEEEeccccceecccccceeeeecccccccCCCCCCCHHHHHHhccCC-ccceEEEeccccccccc
Confidence 9863 23333 34433222111223579999999998763 3457899999999987 689999986421
Q ss_pred --CCCCCcEEEECcCCCCCeeeceEEEecCCCCceEEEEceEEECCeEeeeecC---CeeEEEccCCCCcccCHHHHHHH
Q 018226 237 --DEEEGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAG---GCAAIADSGTSLLAGPTTIITQV 311 (359)
Q Consensus 237 --~~~~~g~l~~Gg~d~~~~~g~l~~~p~~~~~~w~v~~~~i~vg~~~~~~~~~---~~~aiiDTGt~~i~lP~~~~~~i 311 (359)
.....|+|+|||+|++++.|++.|+|+.+..+|.|.+++|+||++.+..... ...+||||||+++++|++++++|
T Consensus 154 ~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~~~~~~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTs~~~lp~~~~~~l 233 (364)
T cd05473 154 SASGTVGGSMVIGGIDPSLYKGDIWYTPIREEWYYEVIILKLEVGGQSLNLDCKEYNYDKAIVDSGTTNLRLPVKVFNAA 233 (364)
T ss_pred ccccCCCcEEEeCCcCHhhcCCCceEEecCcceeEEEEEEEEEECCEecccccccccCccEEEeCCCcceeCCHHHHHHH
Confidence 1224799999999999999999999999889999999999999988754321 24699999999999999999999
Q ss_pred HHHhCCC-----------ceEEecCCcc
Q 018226 312 NHAIGAT-----------GIVSQECKAV 328 (359)
Q Consensus 312 ~~~i~~~-----------~~~~~~C~~~ 328 (359)
.+++++. +.+.++|.+.
T Consensus 234 ~~~l~~~~~~~~~~~~~~~~~~~~C~~~ 261 (364)
T cd05473 234 VDAIKAASLIEDFPDGFWLGSQLACWQK 261 (364)
T ss_pred HHHHHhhcccccCCccccCcceeecccc
Confidence 9999764 1135799853
No 15
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-41 Score=327.50 Aligned_cols=241 Identities=43% Similarity=0.767 Sum_probs=202.0
Q ss_pred eeEeeeecCCceEEEEEEecCCCceEEEEeeCCCCCeeeeCCCCCCCcccCC-Ccc-ccCCCCCCceeCCce--------
Q 018226 78 DIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYF-HSK-YRSGRSSTYKKNGKS-------- 147 (359)
Q Consensus 78 ~~~~l~n~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~~~~C~~-~~~-f~~~~Sst~~~~~~~-------- 147 (359)
...++..+.+.+|+++|+||||||+|.|++||||+++||+|..|.. .|.. +.. |+|++|+||+..+|.
T Consensus 35 ~~~~~~~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~--~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~ 112 (398)
T KOG1339|consen 35 LPESLSSYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSS--ACYSQHNPIFDPSASSTYKSVGCSSPRCKSLP 112 (398)
T ss_pred cccccccccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccc--cccccCCCccCccccccccccCCCCccccccc
Confidence 3456777778899999999999999999999999999999999962 6864 444 999999999987743
Q ss_pred ----------EEEEcCCCc-eeeeEEEEEEEece---eEecCcEEEEEEeecCccccc-cccccccCCCccccccCCCCC
Q 018226 148 ----------ADIHYGTGA-ISGFFSEDHVKIGD---LVVKDQEFIEATREPSLTFLL-AKFDGILGLGFQEISVGKAVP 212 (359)
Q Consensus 148 ----------~~~~y~~gs-~~G~~~~D~v~~g~---~~~~~~~fg~~~~~~~~~~~~-~~~~GilGLg~~~~s~~~~~~ 212 (359)
|.+.|++|+ ++|.++.|+|++++ ...+++.|||+....+. +.. ..++||||||+...+.....+
T Consensus 113 ~~~~~~~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~~~~~~~~~FGc~~~~~g~-~~~~~~~dGIlGLg~~~~S~~~q~~ 191 (398)
T KOG1339|consen 113 QSCSPNSSCPYSIQYGDGSSTSGYLATDTVTFGGTTSLPVPNQTFGCGTNNPGS-FGLFAAFDGILGLGRGSLSVPSQLP 191 (398)
T ss_pred cCcccCCcCceEEEeCCCCceeEEEEEEEEEEccccccccccEEEEeeecCccc-cccccccceEeecCCCCccceeecc
Confidence 999999954 89999999999998 77888999999988765 444 678999999999988555444
Q ss_pred hhhhhhcCCCCCCCeEEEEecCCCCCC-CCcEEEECcCCCCCeeeceEEEecCCCC--ceEEEEceEEECCeE----eee
Q 018226 213 VWYNMVNQGLVNEPVFSFWFNRNADEE-EGGEIVFGGMDPDHYKGEHTYVPVTQKG--YWQFDMGDVMIDGQT----TGF 285 (359)
Q Consensus 213 ~~~~l~~~g~i~~~~fs~~l~~~~~~~-~~g~l~~Gg~d~~~~~g~l~~~p~~~~~--~w~v~~~~i~vg~~~----~~~ 285 (359)
.+.++ .++||+||.+..... .+|.|+||++|+.++.+++.|+|+.... +|.|.+++|.||++. ..+
T Consensus 192 ~~~~~-------~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~~~y~v~l~~I~vgg~~~~~~~~~ 264 (398)
T KOG1339|consen 192 SFYNA-------INVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPSTYYQVNLDGISVGGKRPIGSSLF 264 (398)
T ss_pred cccCC-------ceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCCccEEEEEeEEEECCccCCCcceE
Confidence 33322 239999999875332 5899999999999999999999998877 999999999999842 223
Q ss_pred ecCCeeEEEccCCCCcccCHHHHHHHHHHhCC----C---ceEEecCCcc
Q 018226 286 CAGGCAAIADSGTSLLAGPTTIITQVNHAIGA----T---GIVSQECKAV 328 (359)
Q Consensus 286 ~~~~~~aiiDTGt~~i~lP~~~~~~i~~~i~~----~---~~~~~~C~~~ 328 (359)
+.+.+.+|+||||++++||++++++|.+++++ . +.|.++|...
T Consensus 265 ~~~~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~~~~~~~~~~~~~~C~~~ 314 (398)
T KOG1339|consen 265 CTDGGGAIIDSGTSLTYLPTSAYNALREAIGAEVSVVGTDGEYFVPCFSI 314 (398)
T ss_pred ecCCCCEEEECCcceeeccHHHHHHHHHHHHhheeccccCCceeeecccC
Confidence 44468999999999999999999999999997 3 6688899964
No 16
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=1.8e-40 Score=323.37 Aligned_cols=240 Identities=23% Similarity=0.399 Sum_probs=185.5
Q ss_pred CCceEEEEEEecCCCceEEEEeeCCCCCeeeeCCCCCCCcccC--CCccccCCCCCCceeCC------------------
Q 018226 86 MDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACY--FHSKYRSGRSSTYKKNG------------------ 145 (359)
Q Consensus 86 ~~~~y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~~~~C~--~~~~f~~~~Sst~~~~~------------------ 145 (359)
.+.+|+++|+||||||++.|++||||+++||+|..|. .|. .++.|||++|+||+...
T Consensus 81 ~~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~---~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~~~c~~~ 157 (431)
T PLN03146 81 NGGEYLMNISIGTPPVPILAIADTGSDLIWTQCKPCD---DCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCSDE 157 (431)
T ss_pred CCccEEEEEEcCCCCceEEEEECCCCCcceEcCCCCc---ccccCCCCcccCCCCCCCcccCCCCcccccCCCCCCCCCC
Confidence 3678999999999999999999999999999999997 675 45799999999998742
Q ss_pred --ceEEEEcCCCc-eeeeEEEEEEEece-----eEecCcEEEEEEeecCccccccccccccCCCccccccCCCCChhhhh
Q 018226 146 --KSADIHYGTGA-ISGFFSEDHVKIGD-----LVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNM 217 (359)
Q Consensus 146 --~~~~~~y~~gs-~~G~~~~D~v~~g~-----~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l 217 (359)
|.|.+.|++|+ ..|.+++|+|+|++ ..++++.|||+....+. +. ...+||||||+...+ ++.||
T Consensus 158 ~~c~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~-f~-~~~~GilGLG~~~~S------l~sql 229 (431)
T PLN03146 158 NTCTYSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGT-FD-EKGSGIVGLGGGPLS------LISQL 229 (431)
T ss_pred CCCeeEEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCC-cc-CCCceeEecCCCCcc------HHHHh
Confidence 78999999998 58999999999997 46889999999866542 32 257899999998766 45555
Q ss_pred hcCCCCCCCeEEEEecCCC-CCCCCcEEEECcCCCCCeee-ceEEEecCC---CCceEEEEceEEECCeEeeeec-----
Q 018226 218 VNQGLVNEPVFSFWFNRNA-DEEEGGEIVFGGMDPDHYKG-EHTYVPVTQ---KGYWQFDMGDVMIDGQTTGFCA----- 287 (359)
Q Consensus 218 ~~~g~i~~~~fs~~l~~~~-~~~~~g~l~~Gg~d~~~~~g-~l~~~p~~~---~~~w~v~~~~i~vg~~~~~~~~----- 287 (359)
..+ +. ++||+||.+.. +....|.|+||+. .++.| .+.|+|+.. ..+|.|++++|+||++.+....
T Consensus 230 ~~~--~~-~~FSycL~~~~~~~~~~g~l~fG~~--~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~ 304 (431)
T PLN03146 230 GSS--IG-GKFSYCLVPLSSDSNGTSKINFGTN--AIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNG 304 (431)
T ss_pred hHh--hC-CcEEEECCCCCCCCCCcceEEeCCc--cccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCcccccc
Confidence 432 43 59999997532 2234799999984 44544 488999963 4799999999999998875432
Q ss_pred -CCeeEEEccCCCCcccCHHHHHHHHHHh----CCC-----ceEEecCCc---------ccccccceeeehhh
Q 018226 288 -GGCAAIADSGTSLLAGPTTIITQVNHAI----GAT-----GIVSQECKA---------VVSQYGEEIINMLL 341 (359)
Q Consensus 288 -~~~~aiiDTGt~~i~lP~~~~~~i~~~i----~~~-----~~~~~~C~~---------~~~~fg~~~~~~~~ 341 (359)
+...+||||||+++++|+++++++.+++ +.. ..+..+|.+ +.++|++..+++..
T Consensus 305 ~~~g~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~F~Ga~~~l~~ 377 (431)
T PLN03146 305 VEEGNIIIDSGTTLTLLPSDFYSELESAVEEAIGGERVSDPQGLLSLCYSSTSDIKLPIITAHFTGADVKLQP 377 (431)
T ss_pred CCCCcEEEeCCccceecCHHHHHHHHHHHHHHhccccCCCCCCCCCccccCCCCCCCCeEEEEECCCeeecCc
Confidence 2347999999999999999888876654 322 123457864 34577765555443
No 17
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=1.4e-39 Score=301.04 Aligned_cols=236 Identities=46% Similarity=0.846 Sum_probs=205.3
Q ss_pred EEEEEEecCCCceEEEEeeCCCCCeeeeCCCCCCCcccCCCcc--ccCCCCCCceeCCceEEEEcCCCceeeeEEEEEEE
Q 018226 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSK--YRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVK 167 (359)
Q Consensus 90 y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~--f~~~~Sst~~~~~~~~~~~y~~gs~~G~~~~D~v~ 167 (359)
|+++|.||+|+|++.|++||||+++||+|..|.. ..|..... |++..|+++....+.+.+.|++|++.|.++.|+|+
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~Y~~g~~~g~~~~D~v~ 79 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCTS-CSCQKHPRFKYDSSKSSTYKDTGCTFSITYGDGSVTGGLGTDTVT 79 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCCc-cccccCCCCccCccCCceeecCCCEEEEEECCCeEEEEEEEeEEE
Confidence 7899999999999999999999999999999972 23333333 89999999999999999999999999999999999
Q ss_pred eceeEecCcEEEEEEeecCccccccccccccCCCccccccCCCCChhhhhhcCCCCCCCeEEEEecCCCCCCCCcEEEEC
Q 018226 168 IGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFG 247 (359)
Q Consensus 168 ~g~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~fs~~l~~~~~~~~~g~l~~G 247 (359)
+++..++++.||++..... .+.....+||||||+...+.....+++++|.+++.|.+++||+||.+..+....|.|+||
T Consensus 80 ~~~~~~~~~~fg~~~~~~~-~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~i~~~~Fs~~l~~~~~~~~~g~l~~G 158 (283)
T cd05471 80 IGGLTIPNQTFGCATSESG-DFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGLISSPVFSFYLGRDGDGGNGGELTFG 158 (283)
T ss_pred ECCEEEeceEEEEEeccCC-cccccccceEeecCCcccccccCCCHHHHHHHCCCCCCCEEEEEEcCCCCCCCCCEEEEc
Confidence 9999999999999987754 344557899999999987766678899999999999999999999985322348999999
Q ss_pred cCCCCCeeeceEEEecCC--CCceEEEEceEEECCeEeeeecCCeeEEEccCCCCcccCHHHHHHHHHHhCCC-----ce
Q 018226 248 GMDPDHYKGEHTYVPVTQ--KGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGAT-----GI 320 (359)
Q Consensus 248 g~d~~~~~g~l~~~p~~~--~~~w~v~~~~i~vg~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i~~~i~~~-----~~ 320 (359)
|+|++++.+++.|+|+.. ..+|.|.+++|.|++...........++|||||+++++|.+++++|++++++. ..
T Consensus 159 g~d~~~~~~~~~~~p~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~~lp~~~~~~l~~~~~~~~~~~~~~ 238 (283)
T cd05471 159 GIDPSKYTGDLTYTPVVSNGPGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLIYLPSSVYDAILKALGAAVSSSDGG 238 (283)
T ss_pred ccCccccCCceEEEecCCCCCCEEEEEeCeEEECCceeeecCCCcEEEEecCCCCEeCCHHHHHHHHHHhCCcccccCCc
Confidence 999999999999999987 78999999999999974223456789999999999999999999999999886 34
Q ss_pred EEecCCc
Q 018226 321 VSQECKA 327 (359)
Q Consensus 321 ~~~~C~~ 327 (359)
+..+|..
T Consensus 239 ~~~~~~~ 245 (283)
T cd05471 239 YGVDCSP 245 (283)
T ss_pred EEEeCcc
Confidence 6666764
No 18
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=9.7e-40 Score=308.73 Aligned_cols=236 Identities=28% Similarity=0.421 Sum_probs=192.5
Q ss_pred ceEEEEEEecCCCceEEEEeeCCCCCeeeeCCCCCCCcccC--CCccccCCCCCCceeC----------------CceEE
Q 018226 88 AQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACY--FHSKYRSGRSSTYKKN----------------GKSAD 149 (359)
Q Consensus 88 ~~y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~~~~C~--~~~~f~~~~Sst~~~~----------------~~~~~ 149 (359)
..|+++|+||||+|++.|++||||+++||+|..|. .|. .++.|+|++|+|++.. .|.+.
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~---~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~~~~~~~~~~~~~ 78 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCK---NCGIHMEPPYNLNNSITSSILYCDCNKCCYCLSCLNNKCEYS 78 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCC---CcCCCCCCCcCcccccccccccCCCccccccCcCCCCcCcEE
Confidence 36999999999999999999999999999999997 454 4578999999999763 57899
Q ss_pred EEcCCCc-eeeeEEEEEEEeceeEec-------CcEEEEEEeecCccccccccccccCCCccccccCCCCChhhhhhcCC
Q 018226 150 IHYGTGA-ISGFFSEDHVKIGDLVVK-------DQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQG 221 (359)
Q Consensus 150 ~~y~~gs-~~G~~~~D~v~~g~~~~~-------~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~~g 221 (359)
+.|++|+ +.|.++.|+|+|++..++ ++.|||+....+ .+.....+||||||+...+. ..+.+..|++++
T Consensus 79 i~Y~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~-~~~~~~~~GilGLg~~~~~~--~~~~~~~l~~~~ 155 (326)
T cd06096 79 ISYSEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETN-LFLTQQATGILGLSLTKNNG--LPTPIILLFTKR 155 (326)
T ss_pred EEECCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccC-cccccccceEEEccCCcccc--cCchhHHHHHhc
Confidence 9999997 799999999999986653 467998876543 24445679999999987532 223444577777
Q ss_pred CCCC--CeEEEEecCCCCCCCCcEEEECcCCCCCee----------eceEEEecCCCCceEEEEceEEECCeE-eeeecC
Q 018226 222 LVNE--PVFSFWFNRNADEEEGGEIVFGGMDPDHYK----------GEHTYVPVTQKGYWQFDMGDVMIDGQT-TGFCAG 288 (359)
Q Consensus 222 ~i~~--~~fs~~l~~~~~~~~~g~l~~Gg~d~~~~~----------g~l~~~p~~~~~~w~v~~~~i~vg~~~-~~~~~~ 288 (359)
.+.. ++||+||++. .|.|+|||+|++++. +++.|+|+.+..+|.|.+++|+|+++. ......
T Consensus 156 ~~~~~~~~FS~~l~~~-----~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~~~~y~v~l~~i~vg~~~~~~~~~~ 230 (326)
T cd06096 156 PKLKKDKIFSICLSED-----GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITRKYYYYVKLEGLSVYGTTSNSGNTK 230 (326)
T ss_pred ccccCCceEEEEEcCC-----CeEEEECccChhhhcccccccccccCCceEEeccCCceEEEEEEEEEEcccccceeccc
Confidence 6654 9999999864 799999999999987 889999999889999999999999886 112346
Q ss_pred CeeEEEccCCCCcccCHHHHHHHHHHhCCCceEEecCCccccccc-ceeeehhhccc
Q 018226 289 GCAAIADSGTSLLAGPTTIITQVNHAIGATGIVSQECKAVVSQYG-EEIINMLLAKV 344 (359)
Q Consensus 289 ~~~aiiDTGt~~i~lP~~~~~~i~~~i~~~~~~~~~C~~~~~~fg-~~~~~~~~~~~ 344 (359)
...++|||||+++++|+++++++.+++ -.+.+.|+ +..+++.++++
T Consensus 231 ~~~aivDSGTs~~~lp~~~~~~l~~~~----------P~i~~~f~~g~~~~i~p~~y 277 (326)
T cd06096 231 GLGMLVDSGSTLSHFPEDLYNKINNFF----------PTITIIFENNLKIDWKPSSY 277 (326)
T ss_pred CCCEEEeCCCCcccCCHHHHHHHHhhc----------CcEEEEEcCCcEEEECHHHh
Confidence 788999999999999999999999998 24556776 55565554333
No 19
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=7.1e-39 Score=298.74 Aligned_cols=232 Identities=30% Similarity=0.531 Sum_probs=195.2
Q ss_pred eEEEEEEecCCCceEEEEeeCCCCCeeeeCCCCCCCcccCCCccccCCCCCCceeCCceEEEEcCCC-ceeeeEEEEEEE
Q 018226 89 QYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTG-AISGFFSEDHVK 167 (359)
Q Consensus 89 ~y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~f~~~~Sst~~~~~~~~~~~y~~g-s~~G~~~~D~v~ 167 (359)
.|+++|.||||+|++.|++||||+++||+ ++.+.|++| ++.|.+++|+|+
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~-----------------------------~~~~~Y~~g~~~~G~~~~D~v~ 52 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP-----------------------------DFSISYGDGTSASGTWGTDTVS 52 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee-----------------------------eeEEEeccCCcEEEEEEEEEEE
Confidence 59999999999999999999999999996 678999996 589999999999
Q ss_pred eceeEecCcEEEEEEeecCccccccccccccCCCcccccc-----CCCCChhhhhhcCCCCCCCeEEEEecCCCCCCCCc
Q 018226 168 IGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISV-----GKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGG 242 (359)
Q Consensus 168 ~g~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~-----~~~~~~~~~l~~~g~i~~~~fs~~l~~~~~~~~~g 242 (359)
+++..++++.||++.... ..+||||||+...+. ...++++++|.+||+|++++||+||.+.. ...|
T Consensus 53 ~g~~~~~~~~fg~~~~~~-------~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~~g~i~~~~Fsl~l~~~~--~~~g 123 (295)
T cd05474 53 IGGATVKNLQFAVANSTS-------SDVGVLGIGLPGNEATYGTGYTYPNFPIALKKQGLIKKNAYSLYLNDLD--ASTG 123 (295)
T ss_pred ECCeEecceEEEEEecCC-------CCcceeeECCCCCcccccCCCcCCCHHHHHHHCCcccceEEEEEeCCCC--CCce
Confidence 999999999999998632 468999999988743 23457999999999999999999998753 2379
Q ss_pred EEEECcCCCCCeeeceEEEecCCC------CceEEEEceEEECCeEee--eecCCeeEEEccCCCCcccCHHHHHHHHHH
Q 018226 243 EIVFGGMDPDHYKGEHTYVPVTQK------GYWQFDMGDVMIDGQTTG--FCAGGCAAIADSGTSLLAGPTTIITQVNHA 314 (359)
Q Consensus 243 ~l~~Gg~d~~~~~g~l~~~p~~~~------~~w~v~~~~i~vg~~~~~--~~~~~~~aiiDTGt~~i~lP~~~~~~i~~~ 314 (359)
.|+|||+|++++.|+++|+|+... .+|.|.+++|.+++.... .......++|||||+++++|.+++++|.++
T Consensus 124 ~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~iiDSGt~~~~lP~~~~~~l~~~ 203 (295)
T cd05474 124 SILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLLSKNLPALLDSGTTLTYLPSDIVDAIAKQ 203 (295)
T ss_pred eEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccccCCCccEEECCCCccEeCCHHHHHHHHHH
Confidence 999999999999999999999765 789999999999998753 234578999999999999999999999999
Q ss_pred hCCC-----ceEEecCCcc-----cccccceeeehhhccccchhhc-ccccceee
Q 018226 315 IGAT-----GIVSQECKAV-----VSQYGEEIINMLLAKVSAKLSL-RHYKKWLI 358 (359)
Q Consensus 315 i~~~-----~~~~~~C~~~-----~~~fg~~~~~~~~~~~~~~~~~-~~~~~~~~ 358 (359)
+++. +.|.++|++. .+.|++..+.+++.++.-.... .....+|.
T Consensus 204 ~~~~~~~~~~~~~~~C~~~~~p~i~f~f~g~~~~i~~~~~~~~~~~~~~~~~~C~ 258 (295)
T cd05474 204 LGATYDSDEGLYVVDCDAKDDGSLTFNFGGATISVPLSDLVLPASTDDGGDGACY 258 (295)
T ss_pred hCCEEcCCCcEEEEeCCCCCCCEEEEEECCeEEEEEHHHhEeccccCCCCCCCeE
Confidence 9886 6789999964 4478887766666555432221 22477885
No 20
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=2.1e-38 Score=296.19 Aligned_cols=229 Identities=23% Similarity=0.409 Sum_probs=179.6
Q ss_pred eEEEEEEecCCCceEEEEeeCCCCCeeeeCCCCCCCcccCCCccccCCCCCCceeCCceEEEEcCCCc-eeeeEEEEEEE
Q 018226 89 QYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGA-ISGFFSEDHVK 167 (359)
Q Consensus 89 ~y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~f~~~~Sst~~~~~~~~~~~y~~gs-~~G~~~~D~v~ 167 (359)
+|+++|.||||||++.|++||||+++||+|..| |.|.+.|++|+ ++|.++.|+|+
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c------------------------~~~~i~Yg~Gs~~~G~~~~D~v~ 56 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC------------------------CLYQVSYGDGSYTTGDLATDTLT 56 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCCC------------------------CeeeeEeCCCceEEEEEEEEEEE
Confidence 599999999999999999999999999976544 67999999998 58999999999
Q ss_pred ecee-EecCcEEEEEEeecCccccccccccccCCCccccccCCCCChhhhhhcCCCCCCCeEEEEecCCCCCCCCcEEEE
Q 018226 168 IGDL-VVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVF 246 (359)
Q Consensus 168 ~g~~-~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~fs~~l~~~~~~~~~g~l~~ 246 (359)
|++. .++++.|||+....+. + ...+||||||+...+ +..++..+ .+++||+||.+.. ...+|+|+|
T Consensus 57 ig~~~~~~~~~Fg~~~~~~~~-~--~~~~GilGLg~~~~s------~~~ql~~~---~~~~FS~~L~~~~-~~~~G~l~f 123 (299)
T cd05472 57 LGSSDVVPGFAFGCGHDNEGL-F--GGAAGLLGLGRGKLS------LPSQTASS---YGGVFSYCLPDRS-SSSSGYLSF 123 (299)
T ss_pred eCCCCccCCEEEECCccCCCc-c--CCCCEEEECCCCcch------HHHHhhHh---hcCceEEEccCCC-CCCCceEEe
Confidence 9998 8999999999866542 2 267999999987665 34455443 3689999998753 234799999
Q ss_pred CcCCCCCeeeceEEEecCCC----CceEEEEceEEECCeEeeee---cCCeeEEEccCCCCcccCHHHHHHHHHHhCCC-
Q 018226 247 GGMDPDHYKGEHTYVPVTQK----GYWQFDMGDVMIDGQTTGFC---AGGCAAIADSGTSLLAGPTTIITQVNHAIGAT- 318 (359)
Q Consensus 247 Gg~d~~~~~g~l~~~p~~~~----~~w~v~~~~i~vg~~~~~~~---~~~~~aiiDTGt~~i~lP~~~~~~i~~~i~~~- 318 (359)
||+|++ .|++.|+|+... .+|.|++++|+||++.+... .....++|||||+++++|++++++|.+++++.
T Consensus 124 Gg~d~~--~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~~~~~~l~~~l~~~~ 201 (299)
T cd05472 124 GAAASV--PAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPSAYAALRDAFRAAM 201 (299)
T ss_pred CCcccc--CCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCHHHHHHHHHHHHHHh
Confidence 999999 899999999753 69999999999999987532 24568999999999999999999999988653
Q ss_pred -------ceEEec-CCc-----------cccccc-ceeeehhhccccchhhcccccceee
Q 018226 319 -------GIVSQE-CKA-----------VVSQYG-EEIINMLLAKVSAKLSLRHYKKWLI 358 (359)
Q Consensus 319 -------~~~~~~-C~~-----------~~~~fg-~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (359)
+.+.++ |.+ +.+.|+ +..+++++.++.-+ ....+.+|+
T Consensus 202 ~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~~g~~~~l~~~~y~~~--~~~~~~~C~ 259 (299)
T cd05472 202 AAYPRAPGFSILDTCYDLSGFRSVSVPTVSLHFQGGADVELDASGVLYP--VDDSSQVCL 259 (299)
T ss_pred ccCCCCCCCCCCCccCcCCCCcCCccCCEEEEECCCCEEEeCcccEEEE--ecCCCCEEE
Confidence 234454 842 344675 56666665544331 112456774
No 21
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=1.7e-36 Score=278.56 Aligned_cols=210 Identities=24% Similarity=0.379 Sum_probs=171.9
Q ss_pred eEEEEEEecCCCceEEEEeeCCCCCeeeeCCCCCCCcccCCCccccCCCCCCceeCCceEEEEcCCCc-eeeeEEEEEEE
Q 018226 89 QYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGA-ISGFFSEDHVK 167 (359)
Q Consensus 89 ~y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~f~~~~Sst~~~~~~~~~~~y~~gs-~~G~~~~D~v~ 167 (359)
+|+++|+||||||++.|++||||+++||+| |.+.+.|++|+ ++|.++.|+|.
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~---------------------------~~~~~~Y~dg~~~~G~~~~D~v~ 53 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC---------------------------CSYEYSYGDGSSTSGVLATETFT 53 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC---------------------------CceEeEeCCCceeeeeEEEEEEE
Confidence 499999999999999999999999999974 45789999775 89999999999
Q ss_pred ecee--EecCcEEEEEEeecCccccccccccccCCCccccccCCCCChhhhhhcCCCCCCCeEEEEecCCCCCCCCcEEE
Q 018226 168 IGDL--VVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIV 245 (359)
Q Consensus 168 ~g~~--~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~fs~~l~~~~~~~~~g~l~ 245 (359)
+++. .++++.||++..... +.....+||||||+...+ ++.+|..++ ++||+||.+..+....|+|+
T Consensus 54 ~g~~~~~~~~~~Fg~~~~~~~--~~~~~~~GIlGLg~~~~s------~~~ql~~~~----~~Fs~~l~~~~~~~~~G~l~ 121 (265)
T cd05476 54 FGDSSVSVPNVAFGCGTDNEG--GSFGGADGILGLGRGPLS------LVSQLGSTG----NKFSYCLVPHDDTGGSSPLI 121 (265)
T ss_pred ecCCCCccCCEEEEecccccC--CccCCCCEEEECCCCccc------HHHHhhccc----CeeEEEccCCCCCCCCCeEE
Confidence 9998 899999999987654 445678999999987654 667777766 89999998753334589999
Q ss_pred ECcCCCCCeeeceEEEecCC----CCceEEEEceEEECCeEeee--------ecCCeeEEEccCCCCcccCHHHHHHHHH
Q 018226 246 FGGMDPDHYKGEHTYVPVTQ----KGYWQFDMGDVMIDGQTTGF--------CAGGCAAIADSGTSLLAGPTTIITQVNH 313 (359)
Q Consensus 246 ~Gg~d~~~~~g~l~~~p~~~----~~~w~v~~~~i~vg~~~~~~--------~~~~~~aiiDTGt~~i~lP~~~~~~i~~ 313 (359)
|||+|++ +.|++.|+|+.. .++|.|++++|+|+++.+.+ ......+||||||+++++|++++
T Consensus 122 fGg~d~~-~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs~~~lp~~~~----- 195 (265)
T cd05476 122 LGDAADL-GGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLTYLPDPAY----- 195 (265)
T ss_pred ECCcccc-cCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCcceEcCcccc-----
Confidence 9999999 999999999975 58999999999999998742 34567899999999999999988
Q ss_pred HhCCCceEEecCCccccccc-ceeeehhhccccchhhcccccceee
Q 018226 314 AIGATGIVSQECKAVVSQYG-EEIINMLLAKVSAKLSLRHYKKWLI 358 (359)
Q Consensus 314 ~i~~~~~~~~~C~~~~~~fg-~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (359)
-.+.+.|+ +..+.+.++++.. ..+...+|+
T Consensus 196 ------------P~i~~~f~~~~~~~i~~~~y~~---~~~~~~~C~ 226 (265)
T cd05476 196 ------------PDLTLHFDGGADLELPPENYFV---DVGEGVVCL 226 (265)
T ss_pred ------------CCEEEEECCCCEEEeCcccEEE---ECCCCCEEE
Confidence 24556777 6666665544433 123456775
No 22
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=3.5e-35 Score=270.92 Aligned_cols=185 Identities=25% Similarity=0.395 Sum_probs=155.8
Q ss_pred eEEEEEEecCCCceEEEEeeCCCCCeeeeCC-CCCCCcccCCCccccCCCCCCceeCCceEEEEcCCC-ceeeeEEEEEE
Q 018226 89 QYFGEIGIGTPPQNFTVIFDTGSSNLWVPSS-KCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTG-AISGFFSEDHV 166 (359)
Q Consensus 89 ~y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~-~C~~~~~C~~~~~f~~~~Sst~~~~~~~~~~~y~~g-s~~G~~~~D~v 166 (359)
+|+++|.||||||++.|++||||+++||+|. .|. .| .|.|.+.|+++ ++.|.+++|+|
T Consensus 2 ~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~---~c-----------------~c~~~i~Ygd~~~~~G~~~~D~v 61 (273)
T cd05475 2 YYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCT---GC-----------------QCDYEIEYADGGSSMGVLVTDIF 61 (273)
T ss_pred ceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCC---CC-----------------cCccEeEeCCCCceEEEEEEEEE
Confidence 5999999999999999999999999999984 565 45 46799999966 58999999999
Q ss_pred Eece----eEecCcEEEEEEeecCcc-ccccccccccCCCccccccCCCCChhhhhhcCCCCCCCeEEEEecCCCCCCCC
Q 018226 167 KIGD----LVVKDQEFIEATREPSLT-FLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEG 241 (359)
Q Consensus 167 ~~g~----~~~~~~~fg~~~~~~~~~-~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~fs~~l~~~~~~~~~ 241 (359)
+++. ..++++.|||+....+.. ......+||||||+...+ ++++|.+++.| +++||+||.+. .+
T Consensus 62 ~~~~~~~~~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s------~~~ql~~~~~i-~~~Fs~~l~~~----~~ 130 (273)
T cd05475 62 SLKLTNGSRAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKIS------LPSQLASQGII-KNVIGHCLSSN----GG 130 (273)
T ss_pred EEeecCCCcccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCC------HHHHHHhcCCc-CceEEEEccCC----CC
Confidence 9964 467899999997654321 233467999999997654 78899999999 89999999873 26
Q ss_pred cEEEECcCCCCCeeeceEEEecCCC---CceEEEEceEEECCeEeeeecCCeeEEEccCCCCcccCHHHH
Q 018226 242 GEIVFGGMDPDHYKGEHTYVPVTQK---GYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTII 308 (359)
Q Consensus 242 g~l~~Gg~d~~~~~g~l~~~p~~~~---~~w~v~~~~i~vg~~~~~~~~~~~~aiiDTGt~~i~lP~~~~ 308 (359)
|.|+|| |..++.|++.|+|+.+. ++|.|++++|+||++.+ ......+||||||+++++|++++
T Consensus 131 g~l~~G--~~~~~~g~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~--~~~~~~~ivDTGTt~t~lp~~~y 196 (273)
T cd05475 131 GFLFFG--DDLVPSSGVTWTPMRRESQKKHYSPGPASLLFNGQPT--GGKGLEVVFDSGSSYTYFNAQAY 196 (273)
T ss_pred eEEEEC--CCCCCCCCeeecccccCCCCCeEEEeEeEEEECCEEC--cCCCceEEEECCCceEEcCCccc
Confidence 899998 55667899999999764 89999999999999864 34567899999999999999876
No 23
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=99.97 E-value=1.7e-30 Score=248.12 Aligned_cols=211 Identities=17% Similarity=0.236 Sum_probs=162.9
Q ss_pred ecCCCce-EEEEeeCCCCCeeeeCCC----------CCCCcccCCCccccCCC------CCCceeCCceEEEE-cCCCc-
Q 018226 96 IGTPPQN-FTVIFDTGSSNLWVPSSK----------CYFSIACYFHSKYRSGR------SSTYKKNGKSADIH-YGTGA- 156 (359)
Q Consensus 96 iGtP~q~-~~v~~DTGSs~~wv~~~~----------C~~~~~C~~~~~f~~~~------Sst~~~~~~~~~~~-y~~gs- 156 (359)
+|||-.+ +.|++||||+++||+|.. |. +..|..+..|++.+ +.......|.|... |++|+
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~~~sst~~~~~C~-s~~C~~~~~~~~~~~~~~~~~~~c~~~~C~y~~~~y~~gs~ 80 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDAGHSSTYQTVPCS-SSVCSLANRYHCPGTCGGAPGPGCGNNTCTAHPYNPVTGEC 80 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCCCCcCCCCccCcC-ChhhccccccCCCccccCCCCCCCCCCcCeeEccccccCcE
Confidence 4777666 999999999999997764 43 56777666676542 22333345777554 77885
Q ss_pred eeeeEEEEEEEece--------eEecCcEEEEEEeecCccccccccccccCCCccccccCCCCChhhhhhcCCCCCCCeE
Q 018226 157 ISGFFSEDHVKIGD--------LVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVF 228 (359)
Q Consensus 157 ~~G~~~~D~v~~g~--------~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~f 228 (359)
..|.+++|+|+|+. ..++++.|||+.......+ ...++||||||+...+ +..+|..++. .+++|
T Consensus 81 t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~-~~~~dGIlGLg~~~lS------l~sql~~~~~-~~~~F 152 (362)
T cd05489 81 ATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGL-PPGAQGVAGLGRSPLS------LPAQLASAFG-VARKF 152 (362)
T ss_pred eeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCC-ccccccccccCCCccc------hHHHhhhhcC-CCcce
Confidence 79999999999973 3688999999976432122 2347999999999887 4556666554 47999
Q ss_pred EEEecCCCCCCCCcEEEECcCCCCCee------eceEEEecCCC----CceEEEEceEEECCeEeeee--------cCCe
Q 018226 229 SFWFNRNADEEEGGEIVFGGMDPDHYK------GEHTYVPVTQK----GYWQFDMGDVMIDGQTTGFC--------AGGC 290 (359)
Q Consensus 229 s~~l~~~~~~~~~g~l~~Gg~d~~~~~------g~l~~~p~~~~----~~w~v~~~~i~vg~~~~~~~--------~~~~ 290 (359)
|+||.+.. ..+|.|+||+.++.++. ++++|+|+... .+|.|++++|+||++.+.+. .+..
T Consensus 153 S~CL~~~~--~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~~~~~~ 230 (362)
T cd05489 153 ALCLPSSP--GGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSANDRLGPG 230 (362)
T ss_pred EEEeCCCC--CCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhccccccCCC
Confidence 99998753 23799999999988774 78999999754 79999999999999987542 2346
Q ss_pred eEEEccCCCCcccCHHHHHHHHHHhCC
Q 018226 291 AAIADSGTSLLAGPTTIITQVNHAIGA 317 (359)
Q Consensus 291 ~aiiDTGt~~i~lP~~~~~~i~~~i~~ 317 (359)
.+||||||++++||++++++|.+++.+
T Consensus 231 g~iiDSGTs~t~lp~~~y~~l~~a~~~ 257 (362)
T cd05489 231 GVKLSTVVPYTVLRSDIYRAFTQAFAK 257 (362)
T ss_pred cEEEecCCceEEECHHHHHHHHHHHHH
Confidence 799999999999999999999988754
No 24
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.91 E-value=1.3e-23 Score=166.73 Aligned_cols=108 Identities=61% Similarity=0.925 Sum_probs=95.1
Q ss_pred EEEEecCCCceEEEEeeCCCCCeeeeCCCCCCCcccCCCccc-cCCCCCCceeCCceEEEEcCCCceeeeEEEEEEEece
Q 018226 92 GEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKY-RSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGD 170 (359)
Q Consensus 92 ~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~f-~~~~Sst~~~~~~~~~~~y~~gs~~G~~~~D~v~~g~ 170 (359)
++|.||||||++.|++||||+++||++..|. ...|..++.| ++.+|+++....+.+.+.|++|++.|.++.|+|++++
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~-~~~~~~~~~~~~~~~sst~~~~~~~~~~~Y~~g~~~g~~~~D~v~ig~ 79 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQ-SLAIYSHSSYDDPSASSTYSDNGCTFSITYGTGSLSGGLSTDTVSIGD 79 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCC-CcccccccccCCcCCCCCCCCCCcEEEEEeCCCeEEEEEEEEEEEECC
Confidence 4799999999999999999999999999986 3344445566 9999999999999999999999999999999999999
Q ss_pred eEecCcEEEEEEeecCccccccccccccCC
Q 018226 171 LVVKDQEFIEATREPSLTFLLAKFDGILGL 200 (359)
Q Consensus 171 ~~~~~~~fg~~~~~~~~~~~~~~~~GilGL 200 (359)
..++++.||++....+..+.....+|||||
T Consensus 80 ~~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 80 IEVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred EEECCEEEEEEEecCCccccccccccccCC
Confidence 999999999999876644444578999998
No 25
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.88 E-value=8.8e-22 Score=167.56 Aligned_cols=136 Identities=33% Similarity=0.546 Sum_probs=105.3
Q ss_pred EEEEEEecCCCceEEEEeeCCCCCeeeeCCCCCCCcccCCCccccCCCCCCceeC----------------------Cce
Q 018226 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKN----------------------GKS 147 (359)
Q Consensus 90 y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~f~~~~Sst~~~~----------------------~~~ 147 (359)
|+++|.||||+|++.|++||||+.+|++| ..+.|+|.+|+||+.. .|.
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C----------~~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~~~C~ 70 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQC----------PDPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSNNSCP 70 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET--------------STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCESSEEE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcC----------CCcccCCccCCcccccCCCCcchhhcccccccCCCCcCccc
Confidence 89999999999999999999999999987 2457777777777652 258
Q ss_pred EEEEcCCCc-eeeeEEEEEEEece-----eEecCcEEEEEEeecCccccccccccccCCCccccccCCCCChhhhhhcCC
Q 018226 148 ADIHYGTGA-ISGFFSEDHVKIGD-----LVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQG 221 (359)
Q Consensus 148 ~~~~y~~gs-~~G~~~~D~v~~g~-----~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~~g 221 (359)
|.+.|++++ ..|.+++|+++++. ..+.++.|||+....+.. ...+||||||+...+ ++.||.++
T Consensus 71 y~~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g~~---~~~~GilGLg~~~~S------l~sQl~~~- 140 (164)
T PF14543_consen 71 YSQSYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSGLF---YGADGILGLGRGPLS------LPSQLASS- 140 (164)
T ss_dssp EEEEETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGTSS---TTEEEEEE-SSSTTS------HHHHHHHH-
T ss_pred ceeecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeeccccCC---cCCCcccccCCCccc------HHHHHHHh-
Confidence 999999987 79999999999986 457789999998776432 277999999998877 78888877
Q ss_pred CCCCCeEEEEecCCCCCCCCcEEEECc
Q 018226 222 LVNEPVFSFWFNRNADEEEGGEIVFGG 248 (359)
Q Consensus 222 ~i~~~~fs~~l~~~~~~~~~g~l~~Gg 248 (359)
..++||+||.+ .+....|.|+||+
T Consensus 141 --~~~~FSyCL~~-~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 141 --SGNKFSYCLPS-SSPSSSGFLSFGD 164 (164)
T ss_dssp ----SEEEEEB-S--SSSSEEEEEECS
T ss_pred --cCCeEEEECCC-CCCCCCEEEEeCc
Confidence 57999999998 2344589999995
No 26
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=98.19 E-value=4.8e-06 Score=63.61 Aligned_cols=92 Identities=17% Similarity=0.291 Sum_probs=65.1
Q ss_pred eEEEEEEecCCCceEEEEeeCCCCCeeeeCCCCCCCcccCCCccccCCCCCCceeCCceEEEEcCCCc-eeeeEEEEEEE
Q 018226 89 QYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGA-ISGFFSEDHVK 167 (359)
Q Consensus 89 ~y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~f~~~~Sst~~~~~~~~~~~y~~gs-~~G~~~~D~v~ 167 (359)
.|++++.|+ ++++++++|||++.+|+..+... .+. . . ............+|. .......+.++
T Consensus 2 ~~~v~v~i~--~~~~~~llDTGa~~s~i~~~~~~---~l~---~--~------~~~~~~~~~~~~~G~~~~~~~~~~~i~ 65 (96)
T cd05483 2 HFVVPVTIN--GQPVRFLLDTGASTTVISEELAE---RLG---L--P------LTLGGKVTVQTANGRVRAARVRLDSLQ 65 (96)
T ss_pred cEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHH---HcC---C--C------ccCCCcEEEEecCCCccceEEEcceEE
Confidence 489999999 69999999999999999764321 111 0 0 112234556677776 34555688999
Q ss_pred eceeEecCcEEEEEEeecCccccccccccccCCCc
Q 018226 168 IGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGF 202 (359)
Q Consensus 168 ~g~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 202 (359)
+|+..++++.+........ ..+||||+.+
T Consensus 66 ig~~~~~~~~~~v~d~~~~------~~~gIlG~d~ 94 (96)
T cd05483 66 IGGITLRNVPAVVLPGDAL------GVDGLLGMDF 94 (96)
T ss_pred ECCcEEeccEEEEeCCccc------CCceEeChHH
Confidence 9999999988877654321 4689999863
No 27
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=98.00 E-value=1.2e-05 Score=68.18 Aligned_cols=50 Identities=18% Similarity=0.341 Sum_probs=40.8
Q ss_pred ceEEEEceEEECCeEeeeecC-------CeeEEEccCCCCcccCHHHHHHHHHHhCC
Q 018226 268 YWQFDMGDVMIDGQTTGFCAG-------GCAAIADSGTSLLAGPTTIITQVNHAIGA 317 (359)
Q Consensus 268 ~w~v~~~~i~vg~~~~~~~~~-------~~~aiiDTGt~~i~lP~~~~~~i~~~i~~ 317 (359)
+|.|++++|+||++.+.+... ...++|||||++++||+++++++.+++.+
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~ 57 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDA 57 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHH
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHH
Confidence 588999999999999876644 46899999999999999999999988844
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=97.41 E-value=0.0012 Score=53.00 Aligned_cols=101 Identities=21% Similarity=0.348 Sum_probs=67.5
Q ss_pred EeeeecCCceEEEEEEecCCCceEEEEeeCCCCCeeeeCCCCCCCcccCCCccccCCCCCCceeCCceEEEEcCCCcee-
Q 018226 80 VALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAIS- 158 (359)
Q Consensus 80 ~~l~n~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~f~~~~Sst~~~~~~~~~~~y~~gs~~- 158 (359)
+++.-..+..|++++.|. ++++.+++|||++.+-+....-. .-..++. .......+.-+.|...
T Consensus 2 ~~i~~~~~g~~~v~~~In--G~~~~flVDTGAs~t~is~~~A~-------~Lgl~~~------~~~~~~~~~ta~G~~~~ 66 (121)
T TIGR02281 2 VQLAKDGDGHFYATGRVN--GRNVRFLVDTGATSVALNEEDAQ-------RLGLDLN------RLGYTVTVSTANGQIKA 66 (121)
T ss_pred EEEEEcCCCeEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHH-------HcCCCcc------cCCceEEEEeCCCcEEE
Confidence 456666788899999998 68999999999999887543211 0011111 1122344445566644
Q ss_pred eeEEEEEEEeceeEecCcEEEEEEeecCccccccccccccCCCc
Q 018226 159 GFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGF 202 (359)
Q Consensus 159 G~~~~D~v~~g~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 202 (359)
....-|.+.+|+..+.|..+.+..... ..+|+||+.+
T Consensus 67 ~~~~l~~l~iG~~~~~nv~~~v~~~~~-------~~~~LLGm~f 103 (121)
T TIGR02281 67 ARVTLDRVAIGGIVVNDVDAMVAEGGA-------LSESLLGMSF 103 (121)
T ss_pred EEEEeCEEEECCEEEeCcEEEEeCCCc-------CCceEcCHHH
Confidence 455889999999999999977664221 1279999864
No 29
>PF13650 Asp_protease_2: Aspartyl protease
Probab=96.92 E-value=0.0075 Score=45.03 Aligned_cols=88 Identities=19% Similarity=0.266 Sum_probs=53.8
Q ss_pred EEEEecCCCceEEEEeeCCCCCeeeeCCCCCCCcccCCCccccCCCCCCceeCCceEEEEcCCCce-eeeEEEEEEEece
Q 018226 92 GEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAI-SGFFSEDHVKIGD 170 (359)
Q Consensus 92 ~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~f~~~~Sst~~~~~~~~~~~y~~gs~-~G~~~~D~v~~g~ 170 (359)
+++.|+ ++++.+++|||++.+.+....+. . ...... .........-.+|.. ......+.+++|+
T Consensus 1 V~v~vn--g~~~~~liDTGa~~~~i~~~~~~---~----l~~~~~------~~~~~~~~~~~~g~~~~~~~~~~~i~ig~ 65 (90)
T PF13650_consen 1 VPVKVN--GKPVRFLIDTGASISVISRSLAK---K----LGLKPR------PKSVPISVSGAGGSVTVYRGRVDSITIGG 65 (90)
T ss_pred CEEEEC--CEEEEEEEcCCCCcEEECHHHHH---H----cCCCCc------CCceeEEEEeCCCCEEEEEEEEEEEEECC
Confidence 367888 69999999999998877544332 0 001111 111123333345543 3455666899999
Q ss_pred eEecCcEEEEEEeecCccccccccccccCCC
Q 018226 171 LVVKDQEFIEATREPSLTFLLAKFDGILGLG 201 (359)
Q Consensus 171 ~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg 201 (359)
..+.+..+.... .....+||||+-
T Consensus 66 ~~~~~~~~~v~~-------~~~~~~~iLG~d 89 (90)
T PF13650_consen 66 ITLKNVPFLVVD-------LGDPIDGILGMD 89 (90)
T ss_pred EEEEeEEEEEEC-------CCCCCEEEeCCc
Confidence 888888776554 123568999973
No 30
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=96.20 E-value=0.064 Score=50.56 Aligned_cols=197 Identities=21% Similarity=0.234 Sum_probs=103.7
Q ss_pred EEEEEEecCCC----ceEE-EEeeCCCCCeeeeCCCCCCCcccCCCccccCCCCCCceeCCceE--EEEcCCCceeeeEE
Q 018226 90 YFGEIGIGTPP----QNFT-VIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSA--DIHYGTGAISGFFS 162 (359)
Q Consensus 90 y~~~i~iGtP~----q~~~-v~~DTGSs~~wv~~~~C~~~~~C~~~~~f~~~~Sst~~~~~~~~--~~~y~~gs~~G~~~ 162 (359)
-++.|+|=-|+ |++. |++||||.=+=+..+.-... -........+ .+.+. -..|++|..=|-+.
T Consensus 24 p~VsVtVC~PGts~CqTIdnvlVDTGS~GLRi~~sAl~~~----l~~~Lp~~t~-----~g~~laEC~~F~sgytWGsVr 94 (370)
T PF11925_consen 24 PTVSVTVCAPGTSNCQTIDNVLVDTGSYGLRIFASALPSS----LAGSLPQQTG-----GGAPLAECAQFASGYTWGSVR 94 (370)
T ss_pred eeeEEEEeCCCCCCceeeCcEEEeccchhhhHHHhhhchh----hhccCCcccC-----CCcchhhhhhccCcccccceE
Confidence 56677776554 6665 99999999777654422100 0001111111 11111 14567777668889
Q ss_pred EEEEEeceeEecCcEEEEEEeec-----------C---ccccccccccccCCCcccccc----------------CCC-C
Q 018226 163 EDHVKIGDLVVKDQEFIEATREP-----------S---LTFLLAKFDGILGLGFQEISV----------------GKA-V 211 (359)
Q Consensus 163 ~D~v~~g~~~~~~~~fg~~~~~~-----------~---~~~~~~~~~GilGLg~~~~s~----------------~~~-~ 211 (359)
+.+|+|++....+..+-+..+.. + ........+||||+|.-.... ... .
T Consensus 95 ~AdV~igge~A~~iPiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~~~~DcG~~C~~sa~~~~YY~C~~~~s 174 (370)
T PF11925_consen 95 TADVTIGGETASSIPIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGPFPYDCGAACAQSALPGNYYSCPSGGS 174 (370)
T ss_pred EEEEEEcCeeccccCEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecCCccccCchhhcccCCCceEECCCCCC
Confidence 99999999877777666553320 0 011234679999998654221 001 0
Q ss_pred ChhhhhhcCCCCCCCeEEEEecCCC------------CCCCCcEEEEC-cCCCCC-eeeceEEEecCCCCceEEEEceEE
Q 018226 212 PVWYNMVNQGLVNEPVFSFWFNRNA------------DEEEGGEIVFG-GMDPDH-YKGEHTYVPVTQKGYWQFDMGDVM 277 (359)
Q Consensus 212 ~~~~~l~~~g~i~~~~fs~~l~~~~------------~~~~~g~l~~G-g~d~~~-~~g~l~~~p~~~~~~w~v~~~~i~ 277 (359)
-.-..+-...++..||..|-.+.+. .....|.|+|| |-.... ..+..+..+....++..- .
T Consensus 175 Ct~t~v~~~~QV~NPV~~Fa~DNNGvii~lP~v~~~Ga~SatG~LiFGIgTQsNN~l~~~~~~~~~~~~G~~tt-----~ 249 (370)
T PF11925_consen 175 CTSTTVPLAQQVANPVARFATDNNGVIIQLPAVSASGAASATGTLIFGIGTQSNNALPSGATVLTTDSNGDFTT-----T 249 (370)
T ss_pred eecccchhhhcccCcccccCccCCeEEEecCCCCCCCCccceEEEEEecCCcccCcccccceEEeecCCceEEE-----E
Confidence 0011122222366677666433321 23367999999 221111 122244455555554322 2
Q ss_pred ECCeEeeeecCCeeEEEccCCCCcccCHH
Q 018226 278 IDGQTTGFCAGGCAAIADSGTSLLAGPTT 306 (359)
Q Consensus 278 vg~~~~~~~~~~~~aiiDTGt~~i~lP~~ 306 (359)
.++... ....||||+.-.++|..
T Consensus 250 ~~G~t~------~~sf~DSGSNg~fF~d~ 272 (370)
T PF11925_consen 250 FNGQTY------SASFFDSGSNGYFFPDS 272 (370)
T ss_pred ecCcee------eeeeEecCCceeeccCC
Confidence 233332 13489999999888854
No 31
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=96.06 E-value=0.083 Score=45.66 Aligned_cols=91 Identities=15% Similarity=0.198 Sum_probs=68.3
Q ss_pred CceeEeeeecCCceEEEEEEecCCCceEEEEeeCCCCCeeeeCCCCCCCcccCCCccccCCCCCCceeCCceEEEEcCCC
Q 018226 76 DADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTG 155 (359)
Q Consensus 76 ~~~~~~l~n~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~f~~~~Sst~~~~~~~~~~~y~~g 155 (359)
+...+.|....+.-|.++..|. +|+++.++|||-+.+-+..+.-. .--++.+ ..+.++.+.-++|
T Consensus 92 g~~~v~Lak~~~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~dA~-------RlGid~~------~l~y~~~v~TANG 156 (215)
T COG3577 92 GYQEVSLAKSRDGHFEANGRVN--GKKVDFLVDTGATSVALNEEDAR-------RLGIDLN------SLDYTITVSTANG 156 (215)
T ss_pred CceEEEEEecCCCcEEEEEEEC--CEEEEEEEecCcceeecCHHHHH-------HhCCCcc------ccCCceEEEccCC
Confidence 4456888888889999999999 79999999999999888644321 1234432 2345677777888
Q ss_pred cee-eeEEEEEEEeceeEecCcEEEEE
Q 018226 156 AIS-GFFSEDHVKIGDLVVKDQEFIEA 181 (359)
Q Consensus 156 s~~-G~~~~D~v~~g~~~~~~~~fg~~ 181 (359)
... ..+-.|.|.||++...|+.-.++
T Consensus 157 ~~~AA~V~Ld~v~IG~I~~~nV~A~V~ 183 (215)
T COG3577 157 RARAAPVTLDRVQIGGIRVKNVDAMVA 183 (215)
T ss_pred ccccceEEeeeEEEccEEEcCchhhee
Confidence 865 46788999999999988775444
No 32
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=95.38 E-value=0.13 Score=41.27 Aligned_cols=91 Identities=21% Similarity=0.270 Sum_probs=56.8
Q ss_pred CceEEEEEEecCCCceEEEEeeCCCCCeeeeCCCCCCCcccCCCccccCCCCCCceeCCceEE-EEcCCCc--eeeeEEE
Q 018226 87 DAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD-IHYGTGA--ISGFFSE 163 (359)
Q Consensus 87 ~~~y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~f~~~~Sst~~~~~~~~~-~~y~~gs--~~G~~~~ 163 (359)
...+++++.|+ ++++.+++|||++..++...-+. .|.- .... ...+. ...+.|. ..|..-.
T Consensus 14 ~~~~~v~~~In--g~~~~~LvDTGAs~s~Is~~~a~---~lgl----~~~~-------~~~~~~~~~g~g~~~~~g~~~~ 77 (124)
T cd05479 14 VPMLYINVEIN--GVPVKAFVDSGAQMTIMSKACAE---KCGL----MRLI-------DKRFQGIAKGVGTQKILGRIHL 77 (124)
T ss_pred eeEEEEEEEEC--CEEEEEEEeCCCceEEeCHHHHH---HcCC----cccc-------CcceEEEEecCCCcEEEeEEEE
Confidence 45589999999 69999999999999988644322 1110 0000 11111 2233232 4677777
Q ss_pred EEEEeceeEecCcEEEEEEeecCccccccccccccCCCc
Q 018226 164 DHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGF 202 (359)
Q Consensus 164 D~v~~g~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 202 (359)
+.+.+++...+ ..|.+... ...++|||+-+
T Consensus 78 ~~l~i~~~~~~-~~~~Vl~~--------~~~d~ILG~d~ 107 (124)
T cd05479 78 AQVKIGNLFLP-CSFTVLED--------DDVDFLIGLDM 107 (124)
T ss_pred EEEEECCEEee-eEEEEECC--------CCcCEEecHHH
Confidence 88999998765 56654422 15689999853
No 33
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=94.93 E-value=0.2 Score=37.70 Aligned_cols=74 Identities=14% Similarity=0.055 Sum_probs=46.6
Q ss_pred EEEEEEecCCCceEEEEeeCCCCCeeeeCCCCCCCcccCCCccccCCCCCCceeCCceEEEEcCCCc---eeeeEEEEEE
Q 018226 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGA---ISGFFSEDHV 166 (359)
Q Consensus 90 y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~f~~~~Sst~~~~~~~~~~~y~~gs---~~G~~~~D~v 166 (359)
|++++.|+ ++++.+++||||+..++..+.+. ....+. .......+.-.+|. ..|.. .+.+
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis~~~~~--------~lg~~~------~~~~~~~v~~a~G~~~~~~G~~-~~~v 63 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVISEKTWR--------KLGSPP------LKPTKKRLRTATGTKLSVLGQI-LVTV 63 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeCHHHHH--------HhCCCc------cccccEEEEecCCCEeeEeEEE-EEEE
Confidence 57889999 69999999999999999654432 011110 11223334444554 36766 7889
Q ss_pred EeceeEecCcEEEEE
Q 018226 167 KIGDLVVKDQEFIEA 181 (359)
Q Consensus 167 ~~g~~~~~~~~fg~~ 181 (359)
++++... ...|-..
T Consensus 64 ~~~~~~~-~~~~~v~ 77 (91)
T cd05484 64 KYGGKTK-VLTLYVV 77 (91)
T ss_pred EECCEEE-EEEEEEE
Confidence 9998763 3455444
No 34
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=93.69 E-value=0.43 Score=35.58 Aligned_cols=81 Identities=19% Similarity=0.148 Sum_probs=48.0
Q ss_pred EEEecCCCceEEEEeeCCCCCeeeeCCCCCCCcccCCCccccCCCCCCceeCCceEEEEcCCCceeeeE-EEE-EEEece
Q 018226 93 EIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFF-SED-HVKIGD 170 (359)
Q Consensus 93 ~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~f~~~~Sst~~~~~~~~~~~y~~gs~~G~~-~~D-~v~~g~ 170 (359)
++.|. ++++++++|||.+.+-+....+.. + ....+...+.-..|.....+ ..+ .+.+|+
T Consensus 2 ~v~In--G~~~~fLvDTGA~~tii~~~~a~~---~--------------~~~~~~~~v~gagG~~~~~v~~~~~~v~vg~ 62 (86)
T cd06095 2 TITVE--GVPIVFLVDTGATHSVLKSDLGPK---Q--------------ELSTTSVLIRGVSGQSQQPVTTYRTLVDLGG 62 (86)
T ss_pred EEEEC--CEEEEEEEECCCCeEEECHHHhhh---c--------------cCCCCcEEEEeCCCcccccEEEeeeEEEECC
Confidence 46677 699999999999999997655430 0 01123333444444431111 123 699999
Q ss_pred eEecCcEEEEEEeecCccccccccccccCCCc
Q 018226 171 LVVKDQEFIEATREPSLTFLLAKFDGILGLGF 202 (359)
Q Consensus 171 ~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 202 (359)
....+ .+...... .++|||+-+
T Consensus 63 ~~~~~-~~~v~~~~---------~~~lLG~df 84 (86)
T cd06095 63 HTVSH-SFLVVPNC---------PDPLLGRDL 84 (86)
T ss_pred EEEEE-EEEEEcCC---------CCcEechhh
Confidence 88885 34433211 378998754
No 35
>PF07966 A1_Propeptide: A1 Propeptide ; InterPro: IPR012848 Most eukaryotic endopeptidases (MEROPS peptidase family A1) are synthesised with signal and propeptides. The animal pepsin-like endopeptidase propeptides form a distinct family of propeptides, which contain a conserved motif approximately 30 residues long. In pepsinogen A, the first 11 residues of the mature pepsin sequence are displaced by residues of the propeptide. The propeptide contains two helices that block the active site cleft, in particular the conserved Asp11 residue, in pepsin, hydrogen bonds to a conserved Arg residue in the propeptide. This hydrogen bond stabilises the propeptide conformation and is probably responsible for triggering the conversion of pepsinogen to pepsin under acidic conditions [, ]. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1AVF_Q 1HTR_P 3PSG_A 2PSG_A 3VCM_Q 1TZS_P.
Probab=93.17 E-value=0.05 Score=31.74 Aligned_cols=25 Identities=28% Similarity=0.008 Sum_probs=17.7
Q ss_pred eEEEceeeccchhhhhhhhcccccc
Q 018226 30 LYRIGLKKRKFDLNNRVAARLDSKE 54 (359)
Q Consensus 30 ~~~ipl~~~~~~~~~~~~~~~~~~~ 54 (359)
++||||+|.++.|+.+.+.|...++
T Consensus 1 l~rIPL~K~kS~R~~L~e~g~~~~f 25 (29)
T PF07966_consen 1 LVRIPLKKFKSMRETLREKGTLEEF 25 (29)
T ss_dssp -EEEEEEE---HHHHHHHTT-HHHH
T ss_pred CEEEeccCCchHHHHHHHcCchHHH
Confidence 4799999999999999999887664
No 36
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=88.85 E-value=0.78 Score=32.93 Aligned_cols=33 Identities=18% Similarity=0.372 Sum_probs=28.6
Q ss_pred CceEEEEEEecCCCceEEEEeeCCCCCeeeeCCCC
Q 018226 87 DAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKC 121 (359)
Q Consensus 87 ~~~y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C 121 (359)
...+++++.|| ++.+..++|||++...++.+.+
T Consensus 6 ~g~~~v~~~I~--g~~~~alvDtGat~~fis~~~a 38 (72)
T PF13975_consen 6 PGLMYVPVSIG--GVQVKALVDTGATHNFISESLA 38 (72)
T ss_pred CCEEEEEEEEC--CEEEEEEEeCCCcceecCHHHH
Confidence 46799999999 6999999999999998876544
No 37
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=81.91 E-value=2.1 Score=32.51 Aligned_cols=29 Identities=14% Similarity=0.303 Sum_probs=23.9
Q ss_pred EEEEEecCCCceEEEEeeCCCCCeeeeCCCC
Q 018226 91 FGEIGIGTPPQNFTVIFDTGSSNLWVPSSKC 121 (359)
Q Consensus 91 ~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C 121 (359)
+.+|.|. ++++.+++||||+.+-++...+
T Consensus 7 ~i~v~i~--g~~i~~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 7 YITVKIN--GKKIKALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEEEEET--TEEEEEEEETTBSSEEESSGGS
T ss_pred eEEEeEC--CEEEEEEEecCCCcceeccccc
Confidence 5678888 5899999999999988875543
No 38
>PF13650 Asp_protease_2: Aspartyl protease
Probab=81.74 E-value=2.3 Score=31.16 Aligned_cols=29 Identities=17% Similarity=0.387 Sum_probs=23.7
Q ss_pred EEECCeEeeeecCCeeEEEccCCCCcccCHHHHHHH
Q 018226 276 VMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQV 311 (359)
Q Consensus 276 i~vg~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i 311 (359)
+.|+|++ ..+++|||++.+.++++.++++
T Consensus 3 v~vng~~-------~~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 3 VKVNGKP-------VRFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEECCEE-------EEEEEcCCCCcEEECHHHHHHc
Confidence 4566654 3789999999999999998876
No 39
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=77.63 E-value=3.6 Score=32.78 Aligned_cols=37 Identities=14% Similarity=0.205 Sum_probs=28.3
Q ss_pred CCCceEEEEceEEECCeEeeeecCCeeEEEccCCCCcccCHHHHHHH
Q 018226 265 QKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQV 311 (359)
Q Consensus 265 ~~~~w~v~~~~i~vg~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i 311 (359)
..+++.+. +.|||+.+ .++||||++.+.++++..+++
T Consensus 8 ~~g~~~v~---~~InG~~~-------~flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 8 GDGHFYAT---GRVNGRNV-------RFLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCCeEEEE---EEECCEEE-------EEEEECCCCcEEcCHHHHHHc
Confidence 34555444 46777644 689999999999999998886
No 40
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=77.52 E-value=4.9 Score=28.73 Aligned_cols=29 Identities=21% Similarity=0.306 Sum_probs=24.2
Q ss_pred EEECCeEeeeecCCeeEEEccCCCCcccCHHHHHHH
Q 018226 276 VMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQV 311 (359)
Q Consensus 276 i~vg~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i 311 (359)
+.|++..+ .+++|||++-.+++.+.++.+
T Consensus 13 ~~I~g~~~-------~alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 13 VSIGGVQV-------KALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEECCEEE-------EEEEeCCCcceecCHHHHHHh
Confidence 46666554 589999999999999999887
No 41
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=77.32 E-value=1.6 Score=33.25 Aligned_cols=24 Identities=17% Similarity=0.008 Sum_probs=10.8
Q ss_pred CcchHHHHHHHHHHHHhhhhhccC
Q 018226 3 MVFKSITAGFFLCLLLFPVVFSTP 26 (359)
Q Consensus 3 m~~~~~~~~~~~~~l~~~~~~a~~ 26 (359)
|+++..+++.+++++++++.++++
T Consensus 1 MaSK~~llL~l~LA~lLlisSeva 24 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSEVA 24 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhhhh
Confidence 555554444444444444333333
No 42
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=73.15 E-value=6.2 Score=29.18 Aligned_cols=30 Identities=23% Similarity=0.351 Sum_probs=23.7
Q ss_pred EEECCeEeeeecCCeeEEEccCCCCcccCHHHHHHHH
Q 018226 276 VMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVN 312 (359)
Q Consensus 276 i~vg~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i~ 312 (359)
+.+|++. ..+++|||++.+.++.+..+++.
T Consensus 7 v~i~~~~-------~~~llDTGa~~s~i~~~~~~~l~ 36 (96)
T cd05483 7 VTINGQP-------VRFLLDTGASTTVISEELAERLG 36 (96)
T ss_pred EEECCEE-------EEEEEECCCCcEEcCHHHHHHcC
Confidence 4566554 47899999999999998877663
No 43
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=72.51 E-value=6.3 Score=29.39 Aligned_cols=31 Identities=10% Similarity=0.268 Sum_probs=25.5
Q ss_pred EEECCeEeeeecCCeeEEEccCCCCcccCHHHHHHHHH
Q 018226 276 VMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNH 313 (359)
Q Consensus 276 i~vg~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i~~ 313 (359)
+.|+|+.+ ...+|||++...++++.+..+..
T Consensus 5 ~~Ing~~i-------~~lvDTGA~~svis~~~~~~lg~ 35 (91)
T cd05484 5 LLVNGKPL-------KFQLDTGSAITVISEKTWRKLGS 35 (91)
T ss_pred EEECCEEE-------EEEEcCCcceEEeCHHHHHHhCC
Confidence 56777765 68999999999999999887643
No 44
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=71.12 E-value=5.8 Score=29.70 Aligned_cols=26 Identities=19% Similarity=0.293 Sum_probs=21.7
Q ss_pred EEEecCCCceEEEEeeCCCCCeeeeCCC
Q 018226 93 EIGIGTPPQNFTVIFDTGSSNLWVPSSK 120 (359)
Q Consensus 93 ~i~iGtP~q~~~v~~DTGSs~~wv~~~~ 120 (359)
.+.|+ +|.+.+++|||..++-+....
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~~~~ 27 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIAEND 27 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEcccc
Confidence 45677 799999999999999997544
No 45
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=67.69 E-value=7.7 Score=28.67 Aligned_cols=29 Identities=10% Similarity=0.226 Sum_probs=24.1
Q ss_pred EEECCeEeeeecCCeeEEEccCCCCcccCHHHHHHH
Q 018226 276 VMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQV 311 (359)
Q Consensus 276 i~vg~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i 311 (359)
+.|||+.+ ..++|||.+.+.++++..+.+
T Consensus 3 v~InG~~~-------~fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPI-------VFLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEE-------EEEEECCCCeEEECHHHhhhc
Confidence 45666655 679999999999999999875
No 46
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=63.77 E-value=10 Score=30.30 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=23.2
Q ss_pred EEECCeEeeeecCCeeEEEccCCCCcccCHHHHHHH
Q 018226 276 VMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQV 311 (359)
Q Consensus 276 i~vg~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i 311 (359)
+.|+|..+ .+++|||++...++++.++++
T Consensus 21 ~~Ing~~~-------~~LvDTGAs~s~Is~~~a~~l 49 (124)
T cd05479 21 VEINGVPV-------KAFVDSGAQMTIMSKACAEKC 49 (124)
T ss_pred EEECCEEE-------EEEEeCCCceEEeCHHHHHHc
Confidence 35566644 689999999999999998864
No 47
>PRK14758 hypothetical protein; Provisional
Probab=62.76 E-value=10 Score=21.25 Aligned_cols=22 Identities=18% Similarity=0.187 Sum_probs=16.6
Q ss_pred CcchHHHHHHHHHHHHhhhhhc
Q 018226 3 MVFKSITAGFFLCLLLFPVVFS 24 (359)
Q Consensus 3 m~~~~~~~~~~~~~l~~~~~~a 24 (359)
|.+|.++=++++.+++|.+.++
T Consensus 1 Mv~RYrFEliLivlIlCalia~ 22 (27)
T PRK14758 1 MVGRYRFEFILIILILCALIAA 22 (27)
T ss_pred CchHHHHHHHHHHHHHHHHHHH
Confidence 7788888777777777776654
No 48
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=59.90 E-value=14 Score=29.64 Aligned_cols=76 Identities=21% Similarity=0.259 Sum_probs=42.5
Q ss_pred ceEEEEEEecCCCceEEEEeeCCCCCeeeeCCCCCCCcccCCCccccCCCCCCceeCCceEEEEcCCCc--eeeeEEEEE
Q 018226 88 AQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGA--ISGFFSEDH 165 (359)
Q Consensus 88 ~~y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~f~~~~Sst~~~~~~~~~~~y~~gs--~~G~~~~D~ 165 (359)
...|+++.|+ ++++++.+|||...+-+..+-+. .|.-....+.. .-...+|-|+ ..|.+..-.
T Consensus 23 ~mLyI~~~in--g~~vkA~VDtGAQ~tims~~~a~---r~gL~~lid~r----------~~g~a~GvG~~~i~G~Ih~~~ 87 (124)
T PF09668_consen 23 SMLYINCKIN--GVPVKAFVDTGAQSTIMSKSCAE---RCGLMRLIDKR----------FAGVAKGVGTQKILGRIHSVQ 87 (124)
T ss_dssp ---EEEEEET--TEEEEEEEETT-SS-EEEHHHHH---HTTGGGGEEGG----------G-EE-------EEEEEEEEEE
T ss_pred ceEEEEEEEC--CEEEEEEEeCCCCccccCHHHHH---HcCChhhcccc----------ccccccCCCcCceeEEEEEEE
Confidence 3589999999 69999999999998887543322 44422222211 1123445554 678888888
Q ss_pred EEeceeEecCcEEE
Q 018226 166 VKIGDLVVKDQEFI 179 (359)
Q Consensus 166 v~~g~~~~~~~~fg 179 (359)
+.+|+..++ ..|-
T Consensus 88 l~ig~~~~~-~s~~ 100 (124)
T PF09668_consen 88 LKIGGLFFP-CSFT 100 (124)
T ss_dssp EEETTEEEE-EEEE
T ss_pred EEECCEEEE-EEEE
Confidence 899886554 4443
No 49
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=58.48 E-value=13 Score=31.17 Aligned_cols=29 Identities=21% Similarity=0.391 Sum_probs=22.1
Q ss_pred EEEEEecCCCceEEEEeeCCCCCeeeeCC
Q 018226 91 FGEIGIGTPPQNFTVIFDTGSSNLWVPSS 119 (359)
Q Consensus 91 ~~~i~iGtP~q~~~v~~DTGSs~~wv~~~ 119 (359)
...+.++.-+.+++++|||||+..++...
T Consensus 34 T~~v~l~~~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 34 TAIVQLNCKGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred EEEEEEeecCcEEEEEEeCCCccceeehh
Confidence 34445555579999999999999888654
No 50
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=55.85 E-value=83 Score=25.49 Aligned_cols=30 Identities=23% Similarity=0.378 Sum_probs=24.9
Q ss_pred ceEEEEEEecCCCceEEEEeeCCCCCeeeeCC
Q 018226 88 AQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSS 119 (359)
Q Consensus 88 ~~y~~~i~iGtP~q~~~v~~DTGSs~~wv~~~ 119 (359)
..-.+.+.|.+ +...+++|+|++..++..+
T Consensus 20 ~vi~g~~~I~~--~~~~vLiDSGAThsFIs~~ 49 (135)
T PF08284_consen 20 DVITGTFLINS--IPASVLIDSGATHSFISSS 49 (135)
T ss_pred CeEEEEEEecc--EEEEEEEecCCCcEEccHH
Confidence 34678889995 9999999999999888543
No 51
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=52.92 E-value=11 Score=29.34 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=19.4
Q ss_pred CeeEEEccCCCCcc-cCHHHHHHH
Q 018226 289 GCAAIADSGTSLLA-GPTTIITQV 311 (359)
Q Consensus 289 ~~~aiiDTGt~~i~-lP~~~~~~i 311 (359)
...+++|||.+... +|.++++++
T Consensus 16 ~v~~LVDTGat~~~~l~~~~a~~l 39 (107)
T TIGR03698 16 EVRALVDTGFSGFLLVPPDIVNKL 39 (107)
T ss_pred EEEEEEECCCCeEEecCHHHHHHc
Confidence 35789999999886 999988874
No 52
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=52.46 E-value=14 Score=27.91 Aligned_cols=29 Identities=21% Similarity=0.279 Sum_probs=22.3
Q ss_pred eEEECCeEeeeecCCeeEEEccCCCCcccCHHHHHH
Q 018226 275 DVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQ 310 (359)
Q Consensus 275 ~i~vg~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~ 310 (359)
.+.++++.+ .++||||+..+.++++.+..
T Consensus 9 ~v~i~g~~i-------~~LlDTGA~vsiI~~~~~~~ 37 (100)
T PF00077_consen 9 TVKINGKKI-------KALLDTGADVSIISEKDWKK 37 (100)
T ss_dssp EEEETTEEE-------EEEEETTBSSEEESSGGSSS
T ss_pred EEeECCEEE-------EEEEecCCCcceeccccccc
Confidence 356666654 79999999999999876543
No 53
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=49.13 E-value=45 Score=29.18 Aligned_cols=35 Identities=11% Similarity=0.212 Sum_probs=27.8
Q ss_pred eEEECCeEeeeecCCeeEEEccCCCCcccCHHHHHHHHHHhC
Q 018226 275 DVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIG 316 (359)
Q Consensus 275 ~i~vg~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i~~~i~ 316 (359)
...|||+.+ ..++|||.|.+.++.+..+++-=..+
T Consensus 109 ~~~VNGk~v-------~fLVDTGATsVal~~~dA~RlGid~~ 143 (215)
T COG3577 109 NGRVNGKKV-------DFLVDTGATSVALNEEDARRLGIDLN 143 (215)
T ss_pred EEEECCEEE-------EEEEecCcceeecCHHHHHHhCCCcc
Confidence 457888877 57899999999999998887654443
No 54
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=45.80 E-value=28 Score=27.94 Aligned_cols=30 Identities=17% Similarity=0.254 Sum_probs=23.1
Q ss_pred eEEECCeEeeeecCCeeEEEccCCCCcccCHHHHHHH
Q 018226 275 DVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQV 311 (359)
Q Consensus 275 ~i~vg~~~~~~~~~~~~aiiDTGt~~i~lP~~~~~~i 311 (359)
.+++||+.+ .|+||||+..+..+.+.++++
T Consensus 28 ~~~ing~~v-------kA~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 28 NCKINGVPV-------KAFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEEETTEEE-------EEEEETT-SS-EEEHHHHHHT
T ss_pred EEEECCEEE-------EEEEeCCCCccccCHHHHHHc
Confidence 357777766 699999999999999998874
No 55
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=45.77 E-value=14 Score=29.50 Aligned_cols=23 Identities=17% Similarity=0.366 Sum_probs=19.1
Q ss_pred eEEEccCCC-CcccCHHHHHHHHH
Q 018226 291 AAIADSGTS-LLAGPTTIITQVNH 313 (359)
Q Consensus 291 ~aiiDTGt~-~i~lP~~~~~~i~~ 313 (359)
..++|||.+ ++.+|+++++++..
T Consensus 28 ~~LiDTGFtg~lvlp~~vaek~~~ 51 (125)
T COG5550 28 DELIDTGFTGYLVLPPQVAEKLGL 51 (125)
T ss_pred eeEEecCCceeEEeCHHHHHhcCC
Confidence 348999999 99999999887543
No 56
>COG4714 Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown]
Probab=45.44 E-value=20 Score=31.76 Aligned_cols=26 Identities=23% Similarity=0.177 Sum_probs=22.4
Q ss_pred CCCcchHHHHHHHHHHHHhhhhhccC
Q 018226 1 MGMVFKSITAGFFLCLLLFPVVFSTP 26 (359)
Q Consensus 1 ~~m~~~~~~~~~~~~~l~~~~~~a~~ 26 (359)
|+|+.|+..++.+..+|+|.+..++.
T Consensus 1 ma~~f~~~il~~l~A~L~c~ss~~v~ 26 (303)
T COG4714 1 MAMGFRMKILIKLTALLLCGSSWHVN 26 (303)
T ss_pred CCcchHHHHHHHHHHHHHhhHhhhhc
Confidence 99999999999999999998776643
No 57
>TIGR01165 cbiN cobalt transport protein. This model describes the cobalt transporter in bacteria and its equivalents in archaea. It principally functions in the ion uptake mechanism. It is a multisubunit transporter with two integral membrane proteins and two closely associated cytoplasmic subunits. This transporter belongs to the ABC transporter superfamily (ATP stands for ATP Binding Cassette). This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=40.49 E-value=29 Score=26.04 Aligned_cols=25 Identities=16% Similarity=0.216 Sum_probs=18.4
Q ss_pred CCCcchHHHHHHHHHHHHhhhhhcc
Q 018226 1 MGMVFKSITAGFFLCLLLFPVVFST 25 (359)
Q Consensus 1 ~~m~~~~~~~~~~~~~l~~~~~~a~ 25 (359)
|.|.+...+++++++++++++....
T Consensus 1 m~~~~~~~ll~~v~~l~~~pl~~~~ 25 (91)
T TIGR01165 1 MSMKKTIWLLAAVAALVVLPLLIYA 25 (91)
T ss_pred CCcchhHHHHHHHHHHHHHHHHhcc
Confidence 8888888777777777777666543
No 58
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=39.03 E-value=37 Score=25.57 Aligned_cols=23 Identities=13% Similarity=0.147 Sum_probs=20.4
Q ss_pred eeEEEccCCCCcccCHHHHHHHH
Q 018226 290 CAAIADSGTSLLAGPTTIITQVN 312 (359)
Q Consensus 290 ~~aiiDTGt~~i~lP~~~~~~i~ 312 (359)
..+.+|||++...+|...+..+.
T Consensus 11 v~~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 11 VKFQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred EEEEEecCCEEEeccHHHHhhhc
Confidence 46789999999999999988876
No 59
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=38.64 E-value=39 Score=26.15 Aligned_cols=66 Identities=15% Similarity=0.224 Sum_probs=39.6
Q ss_pred EEEEecCCC----ceEEEEeeCCCCCee-eeCCCCCCCcccCCCccccCCCCCCceeCCceEEEEcCCCc-eeeeEEEEE
Q 018226 92 GEIGIGTPP----QNFTVIFDTGSSNLW-VPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGA-ISGFFSEDH 165 (359)
Q Consensus 92 ~~i~iGtP~----q~~~v~~DTGSs~~w-v~~~~C~~~~~C~~~~~f~~~~Sst~~~~~~~~~~~y~~gs-~~G~~~~D~ 165 (359)
++|.|.+|. -++.+++|||.+..- ++...-. .-...+.. .....-++|. ..-....++
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~~~~a~-------~lgl~~~~---------~~~~~tA~G~~~~~~v~~~~ 65 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFLLVPPDIVN-------KLGLPELD---------QRRVYLADGREVLTDVAKAS 65 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEEecCHHHHH-------HcCCCccc---------CcEEEecCCcEEEEEEEEEE
Confidence 577888873 278899999999764 4422110 00111111 1244556775 455677888
Q ss_pred EEeceeEe
Q 018226 166 VKIGDLVV 173 (359)
Q Consensus 166 v~~g~~~~ 173 (359)
+.+++...
T Consensus 66 v~igg~~~ 73 (107)
T TIGR03698 66 IIINGLEI 73 (107)
T ss_pred EEECCEEE
Confidence 99998765
No 60
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=37.99 E-value=1.4e+02 Score=22.46 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=18.5
Q ss_pred ceEEEEeeCCCCCeeeeCCCCC
Q 018226 101 QNFTVIFDTGSSNLWVPSSKCY 122 (359)
Q Consensus 101 q~~~v~~DTGSs~~wv~~~~C~ 122 (359)
....+++|||+...-+|...|.
T Consensus 8 s~~~fLVDTGA~vSviP~~~~~ 29 (89)
T cd06094 8 SGLRFLVDTGAAVSVLPASSTK 29 (89)
T ss_pred CCcEEEEeCCCceEeecccccc
Confidence 4678999999999999977764
No 61
>PRK02710 plastocyanin; Provisional
Probab=28.06 E-value=83 Score=24.77 Aligned_cols=33 Identities=6% Similarity=0.046 Sum_probs=17.7
Q ss_pred CcchHHHHHHHHHHHHhhhhhc--cCCCceEEEce
Q 018226 3 MVFKSITAGFFLCLLLFPVVFS--TPNGGLYRIGL 35 (359)
Q Consensus 3 m~~~~~~~~~~~~~l~~~~~~a--~~~~~~~~ipl 35 (359)
|++|++++...++++++.++++ .+.+..++|.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~V~~ 35 (119)
T PRK02710 1 MAKRLRSIAAALVAVVSSFGLGVSSASAETVEVKM 35 (119)
T ss_pred CchhHHHHHHHHHHHHHHHHhcccccccceEEEEE
Confidence 6777777755555555544432 33444555544
No 62
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=27.62 E-value=68 Score=27.09 Aligned_cols=29 Identities=14% Similarity=0.137 Sum_probs=23.4
Q ss_pred cCCeeEEEccCCCCcccCHHHHHHHHHHh
Q 018226 287 AGGCAAIADSGTSLLAGPTTIITQVNHAI 315 (359)
Q Consensus 287 ~~~~~aiiDTGt~~i~lP~~~~~~i~~~i 315 (359)
.....++||||++..+.-.++.+.|-=..
T Consensus 43 ~t~i~vLfDSGSPTSfIr~di~~kL~L~~ 71 (177)
T PF12384_consen 43 GTPIKVLFDSGSPTSFIRSDIVEKLELPT 71 (177)
T ss_pred CcEEEEEEeCCCccceeehhhHHhhCCcc
Confidence 44678999999999999999888765443
No 63
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=24.90 E-value=97 Score=27.78 Aligned_cols=44 Identities=20% Similarity=0.264 Sum_probs=30.4
Q ss_pred eeEeeeecCCceEEEE---EEecC-----CCceEEEEeeCCCCCeeeeCCCC
Q 018226 78 DIVALKNYMDAQYFGE---IGIGT-----PPQNFTVIFDTGSSNLWVPSSKC 121 (359)
Q Consensus 78 ~~~~l~n~~~~~y~~~---i~iGt-----P~q~~~v~~DTGSs~~wv~~~~C 121 (359)
...|+.......|.+. |.||. ......+++|||++.+++|...+
T Consensus 170 ~~~p~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~~lp~~~~ 221 (283)
T cd05471 170 TYTPVVSNGPGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLIYLPSSVY 221 (283)
T ss_pred EEEecCCCCCCEEEEEeCeEEECCceeeecCCCcEEEEecCCCCEeCCHHHH
Confidence 4466665434456654 57775 23578899999999999986643
No 64
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=23.51 E-value=86 Score=20.57 Aligned_cols=21 Identities=33% Similarity=0.159 Sum_probs=9.2
Q ss_pred CcchHHHH-HHHHHHHHhhhhh
Q 018226 3 MVFKSITA-GFFLCLLLFPVVF 23 (359)
Q Consensus 3 m~~~~~~~-~~~~~~l~~~~~~ 23 (359)
|.+|.+++ ++++++++....+
T Consensus 1 MmKk~i~~i~~~l~~~~~l~~C 22 (48)
T PRK10081 1 MVKKTIAAIFSVLVLSTVLTAC 22 (48)
T ss_pred ChHHHHHHHHHHHHHHHHHhhh
Confidence 44555444 4444433334444
No 65
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=23.45 E-value=76 Score=23.33 Aligned_cols=8 Identities=13% Similarity=-0.072 Sum_probs=4.2
Q ss_pred CcchHHHH
Q 018226 3 MVFKSITA 10 (359)
Q Consensus 3 m~~~~~~~ 10 (359)
|+||..++
T Consensus 1 MaRRlwiL 8 (100)
T PF05984_consen 1 MARRLWIL 8 (100)
T ss_pred CchhhHHH
Confidence 66664433
No 66
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=22.26 E-value=93 Score=25.20 Aligned_cols=24 Identities=13% Similarity=0.133 Sum_probs=19.6
Q ss_pred CCeeEEEccCCCCcccCHHHHHHH
Q 018226 288 GGCAAIADSGTSLLAGPTTIITQV 311 (359)
Q Consensus 288 ~~~~aiiDTGt~~i~lP~~~~~~i 311 (359)
....++||||++-.++..+.+.++
T Consensus 31 ~~~~vLiDSGAThsFIs~~~a~~~ 54 (135)
T PF08284_consen 31 IPASVLIDSGATHSFISSSFAKKL 54 (135)
T ss_pred EEEEEEEecCCCcEEccHHHHHhc
Confidence 345789999999999998877654
No 67
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=21.83 E-value=2.4e+02 Score=25.55 Aligned_cols=17 Identities=29% Similarity=0.200 Sum_probs=11.5
Q ss_pred ceeEeeeecCCceEEEE
Q 018226 77 ADIVALKNYMDAQYFGE 93 (359)
Q Consensus 77 ~~~~~l~n~~~~~y~~~ 93 (359)
...+.+.|..+..|.++
T Consensus 45 ~~sl~l~N~~~~p~LvQ 61 (253)
T PRK15249 45 SVDVQLKNNDAIPYIVQ 61 (253)
T ss_pred ceeEEEEcCCCCcEEEE
Confidence 44577788766667775
No 68
>cd00303 retropepsin_like Retropepsins; pepsin-like aspartate proteases. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples
Probab=20.11 E-value=1e+02 Score=20.90 Aligned_cols=21 Identities=19% Similarity=0.215 Sum_probs=15.6
Q ss_pred EEEecCCCceEEEEeeCCCCCee
Q 018226 93 EIGIGTPPQNFTVIFDTGSSNLW 115 (359)
Q Consensus 93 ~i~iGtP~q~~~v~~DTGSs~~w 115 (359)
++.++ +..+.+++|||+...-
T Consensus 2 ~~~~~--~~~~~~liDtgs~~~~ 22 (92)
T cd00303 2 KGKIN--GVPVRALVDSGASVNF 22 (92)
T ss_pred EEEEC--CEEEEEEEcCCCcccc
Confidence 34565 4889999999988543
Done!