Query 018228
Match_columns 359
No_of_seqs 196 out of 509
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 07:13:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018228.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018228hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2641 Predicted seven transm 100.0 1.5E-65 3.3E-70 507.9 20.7 258 2-262 85-357 (386)
2 PF03619 Solute_trans_a: Organ 100.0 7.5E-61 1.6E-65 458.9 16.5 213 1-213 52-274 (274)
3 KOG2927 Membrane component of 62.9 5.5 0.00012 40.3 2.4 27 62-96 205-231 (372)
4 PF04144 SCAMP: SCAMP family; 50.8 1E+02 0.0022 28.0 8.5 54 116-170 68-123 (177)
5 PF04544 Herpes_UL20: Herpesvi 29.5 2.6E+02 0.0056 25.9 7.5 68 81-155 30-97 (179)
6 COG4122 Predicted O-methyltran 26.6 26 0.00056 33.3 0.5 24 329-352 128-151 (219)
7 COG3080 FrdD Fumarate reductas 18.1 4.2E+02 0.0091 22.8 6.0 88 80-167 21-112 (118)
8 COG3399 Uncharacterized protei 16.9 7.3E+02 0.016 21.9 8.8 42 130-176 101-142 (148)
9 PRK01371 sec-independent trans 15.1 1.1E+02 0.0025 27.0 2.0 54 195-251 7-60 (137)
10 TIGR00847 ccoS cytochrome oxid 14.0 3.1E+02 0.0067 20.3 3.7 24 119-142 5-28 (51)
No 1
>KOG2641 consensus Predicted seven transmembrane receptor - rhodopsin family [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-65 Score=507.94 Aligned_cols=258 Identities=43% Similarity=0.824 Sum_probs=237.9
Q ss_pred eEEEEEccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHhHhhcCCCccCc-cccccccCCCCC-CChhHHHHhhc
Q 018228 2 SFLSLVFPERAIYFNSIREVYEAWVIYNFLSLCLAWVGGPGAVVLSLSGRVLKPS-VCLMTCCLPPVP-LDGRFIRRCKQ 79 (359)
Q Consensus 2 S~lsL~fPraaiy~d~iRd~YEAfvIY~Ff~LL~~ylGG~~~~v~~l~~~~~~~~-~~~~~CClp~~~-~~~~fLr~~K~ 79 (359)
||+|++.|+.++|+|++||||||||||+|++||++|+|||++++..+++++.+.+ .+|+|||+|++. ++++++|+||+
T Consensus 85 S~vsl~~p~~~~~~~~vr~~Yeaf~ly~F~sLl~~ylGGe~~~v~~l~~~~~~~~~~~P~cc~~~p~~~~~~~~lr~~K~ 164 (386)
T KOG2641|consen 85 SFVSLLVPRVAFYLDTVRECYEAFVLYVFLSLLFHYLGGEQNIVTELEGRLIRVNHTPPFCCFFPPTVRLTPKFLRRCKQ 164 (386)
T ss_pred HHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHhccCCcccCCCCceeccCccccCCHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999999999998844 455555555443 78999999999
Q ss_pred ceeehhhHHHHHHHHHHHHHhcCcccCCCcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcchhhHHHHH
Q 018228 80 GCVQFVILKPILVVATLILFANGKYKDGNFSPDQGYLYITIIYTISYTMALYALVLFYMACRDLLHPFNPVPKFIMIKSV 159 (359)
Q Consensus 80 gVLQyvivrPl~tii~iIl~~~G~Y~eg~~s~~~a~lyl~iI~niSv~lALY~L~lFy~~~k~~L~p~~P~~KFl~IKlV 159 (359)
||+||+|+||+++++++++++.|+|++|++++ |+|+++++|+|+++|+|||.+||+++|++|.||+|+.||+|+|+|
T Consensus 165 ~vlQ~~ivkp~~~lv~lvl~~~g~y~~g~~~~---~~~~~~i~n~S~~lalY~L~~fy~~~~~~L~py~p~~KF~~vk~i 241 (386)
T KOG2641|consen 165 GVLQYPIVKPFLALVTLVLYAFGVYDDGDFSV---YLYLTIIYNCSVSLALYSLVLFYTVTKDELSPYQPVVKFLCVKLI 241 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCCccc---eehhHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHH
Confidence 99999999999999999999999999999987 899999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHcCCCCC------hhHHHHhhhhHHHHHHHHHHHHhhhcccccccccccCCC-------CCchHH
Q 018228 160 VFLTYWQGVLVFLAAKSGLIEN------TDEAAKFQDFILCIEMLIAAVGHLFAFPYKEYAGANIGG-------SRGLTG 226 (359)
Q Consensus 160 VFlsfwQ~vii~lL~~~GvI~~------~~~a~~iqn~LiCiEM~ifAilh~~AF~~k~Y~~~~~~~-------~~~~~~ 226 (359)
||+++||++++.+|++.|.++. +..++++||++||+||+++|++|+||||+++|....... ..+..+
T Consensus 242 vf~~~wQg~vi~~l~~~g~~~~~~~~~~~~~~~~iQnfiiciEM~i~ai~~~~af~~~~ya~~~~~~~~~~~~~~~~~~~ 321 (386)
T KOG2641|consen 242 VFLSFWQGIVLAILVKLGKIGPSYFDEVGTVAYGIQNFLICIEMLIAAIAHFYAFPAAPYALFDERSCDYRSVDMFSISS 321 (386)
T ss_pred HHHHHHHHHHHHHHHHhcccCcccchhHHHHHHHhhhhHHHHHHHHHHHHHHHhCCcchhccccccccccccccccccch
Confidence 9999999999999999999983 346899999999999999999999999999998876655 345678
Q ss_pred HHHhhcCcchHHHHHHhhcccCcceeeeeccCCCCC
Q 018228 227 SLAHALKLNDFYHDTVHQFAPTYHDYVLYNHNEGDE 262 (359)
Q Consensus 227 s~~~~~~~~D~~~D~~~~f~~~y~~y~~~~~~~~~~ 262 (359)
.++|+++++|...|..|+|+++|++|..+++.++..
T Consensus 322 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 357 (386)
T KOG2641|consen 322 SLWDSLMPNDLCSDAIRNFSPTYQDYTPQSDQDALS 357 (386)
T ss_pred HHHHhhcccCcccccccCCCcccccccccccCcccc
Confidence 999999999999999999999999999998665543
No 2
>PF03619 Solute_trans_a: Organic solute transporter Ostalpha; InterPro: IPR005178 This is a family of mainly hypothetical proteins of no known function.
Probab=100.00 E-value=7.5e-61 Score=458.93 Aligned_cols=213 Identities=48% Similarity=0.917 Sum_probs=201.4
Q ss_pred CeEEEEEccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHhHhhcCCCccCccccc---cccCCCCCCChhHHHHh
Q 018228 1 MSFLSLVFPERAIYFNSIREVYEAWVIYNFLSLCLAWVGGPGAVVLSLSGRVLKPSVCLM---TCCLPPVPLDGRFIRRC 77 (359)
Q Consensus 1 ~S~lsL~fPraaiy~d~iRd~YEAfvIY~Ff~LL~~ylGG~~~~v~~l~~~~~~~~~~~~---~CClp~~~~~~~fLr~~ 77 (359)
.||+|+++||+++|+|++||||||+++|+|+.|+++|+|||+++++.+++++..++.+|+ |||+|+++++++++|+|
T Consensus 52 ~S~~sl~~p~~~~~~~~ir~~Yea~~ly~F~~Ll~~y~gg~~~~~~~l~~~~~~~~~~P~~~~~~c~~~~~~~~~~l~~~ 131 (274)
T PF03619_consen 52 CSLLSLLFPRAAIYLDFIRDCYEAFVLYSFFSLLLNYLGGEEALVEVLSGKPPIKHPWPCCCCCCCLPPWPMTKRFLRRC 131 (274)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHhhcCCCCCCCCcccccccCCCccccchHHHHHH
Confidence 489999999999999999999999999999999999999999999998876544433343 46889999999999999
Q ss_pred hcceeehhhHHHHHHHHHHHHHhcCcccCCCcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcchhhHHH
Q 018228 78 KQGCVQFVILKPILVVATLILFANGKYKDGNFSPDQGYLYITIIYTISYTMALYALVLFYMACRDLLHPFNPVPKFIMIK 157 (359)
Q Consensus 78 K~gVLQyvivrPl~tii~iIl~~~G~Y~eg~~s~~~a~lyl~iI~niSv~lALY~L~lFy~~~k~~L~p~~P~~KFl~IK 157 (359)
|+||+||+++||+++++++++++.|.|+||+++++++++|+++++|+|+++|||||.+||+++|++|+|+||++||+|+|
T Consensus 132 k~~VlQ~~vvrpl~~~i~iil~~~g~y~~~~~~~~~~~~~l~ii~~iS~~~Aly~L~~fy~~~~~~L~~~~p~~KF~~iK 211 (274)
T PF03619_consen 132 KWGVLQYVVVRPLLSIISIILEAFGVYCEGSFSPHSAYLYLTIINNISVTLALYGLVIFYRATKEELKPYRPLLKFLCIK 211 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHcCCCCCh-------hHHHHhhhhHHHHHHHHHHHHhhhccccccc
Q 018228 158 SVVFLTYWQGVLVFLAAKSGLIENT-------DEAAKFQDFILCIEMLIAAVGHLFAFPYKEY 213 (359)
Q Consensus 158 lVVFlsfwQ~vii~lL~~~GvI~~~-------~~a~~iqn~LiCiEM~ifAilh~~AF~~k~Y 213 (359)
+|||++|||++++++|...|+++++ +.+.++||+|+|+||+++|++|+|||||+||
T Consensus 212 ~vvfl~f~Q~~ii~iL~~~g~i~~~~~~~~~~~~~~~i~~~LicvEM~i~ai~~~~af~~~~y 274 (274)
T PF03619_consen 212 LVVFLSFWQGFIISILASFGVIPCTPPWSSPEDIASGIQNFLICVEMFIFAILHRYAFPYSPY 274 (274)
T ss_pred HHHHHHHHHHHHHHHHHHCCCcCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 9999999999999999999999874 4689999999999999999999999999998
No 3
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.86 E-value=5.5 Score=40.34 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=13.4
Q ss_pred ccCCCCCCChhHHHHhhcceeehhhHHHHHHHHHH
Q 018228 62 CCLPPVPLDGRFIRRCKQGCVQFVILKPILVVATL 96 (359)
Q Consensus 62 CClp~~~~~~~fLr~~K~gVLQyvivrPl~tii~i 96 (359)
||+|-|| ++||+||+=+.+ +...|++.
T Consensus 205 vLFPLWP------~~mR~gvyY~si--g~~gfl~~ 231 (372)
T KOG2927|consen 205 VLFPLWP------RRMRQGVYYLSI--GAGGFLAF 231 (372)
T ss_pred HhcccCc------HHHhcceeeeec--chhHHHHH
Confidence 4555555 455555555554 44444443
No 4
>PF04144 SCAMP: SCAMP family; InterPro: IPR007273 In vertebrates, secretory carrier membrane proteins (SCAMPs) 1-3 constitute a family of putative membrane-trafficking proteins composed of cytoplasmic N-terminal sequences with NPF repeats, four central transmembrane regions (TMRs), and a cytoplasmic tail. SCAMPs probably function in endocytosis by recruiting EH-domain proteins to the N-terminal NPF repeats but may have additional functions mediated by their other sequences [].; GO: 0015031 protein transport, 0016021 integral to membrane
Probab=50.82 E-value=1e+02 Score=28.04 Aligned_cols=54 Identities=15% Similarity=0.196 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHH-HHHHH-HHHHHHHHhhhcCCCCCcchhhHHHHHHHHHhHHHHHH
Q 018228 116 LYITIIYTISYT-MALYA-LVLFYMACRDLLHPFNPVPKFIMIKSVVFLTYWQGVLV 170 (359)
Q Consensus 116 lyl~iI~niSv~-lALY~-L~lFy~~~k~~L~p~~P~~KFl~IKlVVFlsfwQ~vii 170 (359)
+-+.+++.+--+ .+..+ .--.|++.|++-. .+-..-|+..-.-+.++.||.+-+
T Consensus 68 ~~lai~y~~~~~P~sf~~wyrplY~A~r~dss-~~f~~ff~~~~~~i~f~i~~aIG~ 123 (177)
T PF04144_consen 68 FGLAILYLLLGTPASFFCWYRPLYKAFRTDSS-FRFMWFFFFFFVHIIFCIIMAIGI 123 (177)
T ss_pred ehHHHHHHHHHhHHHHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345566543322 23333 2346777764322 222223333333355566665543
No 5
>PF04544 Herpes_UL20: Herpesvirus egress protein UL20; InterPro: IPR007629 UL20 is predicted to be a transmembrane protein with multiple membrane spans. It is involved in the trans-cellular transport of enveloped virions, and is therefore important for viral egress. However, UL20 operates in different cellular compartments and different stages of egress in Suid herpesvirus 1 (Pseudorabies virus) and herpes simplex virus. This is thought to be due to differences in egress pathways between these two viruses [].; GO: 0019067 viral assembly, maturation, egress, and release
Probab=29.48 E-value=2.6e+02 Score=25.90 Aligned_cols=68 Identities=15% Similarity=0.254 Sum_probs=41.9
Q ss_pred eeehhhHHHHHHHHHHHHHhcCcccCCCcCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcchhhH
Q 018228 81 CVQFVILKPILVVATLILFANGKYKDGNFSPDQGYLYITIIYTISYTMALYALVLFYMACRDLLHPFNPVPKFIM 155 (359)
Q Consensus 81 VLQyvivrPl~tii~iIl~~~G~Y~eg~~s~~~a~lyl~iI~niSv~lALY~L~lFy~~~k~~L~p~~P~~KFl~ 155 (359)
.+-..++||++.++-..-.. +.|+. ....-..++..+...-.+......|+..|.++-|.++..|++.
T Consensus 30 ~~Sal~lKPlCCl~f~~Yy~----~tg~~---~~~~~~~~~T~~yY~~l~l~~~~~Y~NIk~DrLPL~~~qq~~~ 97 (179)
T PF04544_consen 30 WISALVLKPLCCLIFLWYYR----CTGDS---RFFICGLAITAAYYMRLALMAFFLYRNIKRDRLPLSTPQQWIL 97 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHH----hcCch---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcHHHHHHH
Confidence 35566799999887665432 12221 1222223344444444556677889999999999888777654
No 6
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=26.62 E-value=26 Score=33.27 Aligned_cols=24 Identities=29% Similarity=0.623 Sum_probs=20.1
Q ss_pred CCCCccccceeecccCCCCCCCCC
Q 018228 329 SLSAPYDMALIDIDMSSYPAKVPA 352 (359)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~ 352 (359)
-..++|||++||.|=++||.-++.
T Consensus 128 ~~~~~fDliFIDadK~~yp~~le~ 151 (219)
T COG4122 128 LLDGSFDLVFIDADKADYPEYLER 151 (219)
T ss_pred ccCCCccEEEEeCChhhCHHHHHH
Confidence 456899999999999999975543
No 7
>COG3080 FrdD Fumarate reductase subunit D [Energy production and conversion]
Probab=18.09 E-value=4.2e+02 Score=22.77 Aligned_cols=88 Identities=18% Similarity=0.206 Sum_probs=56.0
Q ss_pred ceeehhhHHHHHHHHHHHHHhcCcccCCCcCC---CcchhhH-HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcchhhH
Q 018228 80 GCVQFVILKPILVVATLILFANGKYKDGNFSP---DQGYLYI-TIIYTISYTMALYALVLFYMACRDLLHPFNPVPKFIM 155 (359)
Q Consensus 80 gVLQyvivrPl~tii~iIl~~~G~Y~eg~~s~---~~a~lyl-~iI~niSv~lALY~L~lFy~~~k~~L~p~~P~~KFl~ 155 (359)
|-.-..++-|++.++--++--.|..+..+.+- .+++=++ .++..+-+.++|||-.=-..---.+++=+.|..|+.|
T Consensus 21 Gg~vsAiiaPV~iLl~GillPlG~~d~~~lse~llaf~~s~Igkl~llvl~vlplw~a~HRihHgmhdlk~h~pag~~~f 100 (118)
T COG3080 21 GGMVSAIIAPVLILLVGILLPLGLFDADALSERLLAFAQSPIGKLFLLVLIVLPLWCALHRIHHGMHDLKIHVPAGKWVF 100 (118)
T ss_pred CceehHHHHHHHHHHHHHHhhccccChhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhheeeeeeeeeeee
Confidence 45567789999988887888889887666541 1222233 2333444556666643322222246788899999999
Q ss_pred HHHHHHHHhHHH
Q 018228 156 IKSVVFLTYWQG 167 (359)
Q Consensus 156 IKlVVFlsfwQ~ 167 (359)
--+.+..|-|-.
T Consensus 101 YGlA~i~sv~~~ 112 (118)
T COG3080 101 YGLAVILTVVAL 112 (118)
T ss_pred eHHHHHHHHHHH
Confidence 888777765543
No 8
>COG3399 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=16.91 E-value=7.3e+02 Score=21.93 Aligned_cols=42 Identities=36% Similarity=0.571 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhhhcCCCCCcchhhHHHHHHHHHhHHHHHHHHHHHc
Q 018228 130 LYALVLFYMACRDLLHPFNPVPKFIMIKSVVFLTYWQGVLVFLAAKS 176 (359)
Q Consensus 130 LY~L~lFy~~~k~~L~p~~P~~KFl~IKlVVFlsfwQ~vii~lL~~~ 176 (359)
.+.|+.|-.+++...+.-+|++|++=- ++ |--+++|.+|++.
T Consensus 101 if~Lv~Fsl~c~f~~kk~npvGkyIHp--vv---ft~~~lIviLAK~ 142 (148)
T COG3399 101 IFLLVHFSLACVFMAKKTNPVGKYIHP--VV---FTHMLLIVILAKA 142 (148)
T ss_pred HHHHHHHHHHHHHHHhccCCccceehH--HH---HHHHHHHHHHHHH
Confidence 355788888888888889999998653 22 2235566777653
No 9
>PRK01371 sec-independent translocase; Provisional
Probab=15.13 E-value=1.1e+02 Score=27.04 Aligned_cols=54 Identities=17% Similarity=0.214 Sum_probs=30.1
Q ss_pred HHHHHHHHHhhhcccccccccccCCCCCchHHHHHhhcCcchHHHHHHhhcccCcce
Q 018228 195 IEMLIAAVGHLFAFPYKEYAGANIGGSRGLTGSLAHALKLNDFYHDTVHQFAPTYHD 251 (359)
Q Consensus 195 iEM~ifAilh~~AF~~k~Y~~~~~~~~~~~~~s~~~~~~~~D~~~D~~~~f~~~y~~ 251 (359)
.|++++.++....|..+.--.- ...-+...+.++.+. ++...|+.+.+++.+.+
T Consensus 7 ~EllvIlvVallvfGPeKLP~~-ar~lg~~ir~~R~~~--~~ak~~i~~Elg~ef~d 60 (137)
T PRK01371 7 GELVVLVVLAVLVFGPDKLPKA-ARDAGRTLRQLREMA--NNARNDLRSELGPEFAD 60 (137)
T ss_pred HHHHHHHHHHhheeCchHHHHH-HHHHHHHHHHHHHHH--HHHHHHHHHHhcchhcc
Confidence 4888888888888865443211 111122334555544 25666777777665444
No 10
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=13.98 E-value=3.1e+02 Score=20.26 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 018228 119 TIIYTISYTMALYALVLFYMACRD 142 (359)
Q Consensus 119 ~iI~niSv~lALY~L~lFy~~~k~ 142 (359)
.++.-+|..+++-++..|+.+.|.
T Consensus 5 ~~LIpiSl~l~~~~l~~f~Wavk~ 28 (51)
T TIGR00847 5 TILIPISLLLGGVGLVAFLWSLKS 28 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc
Confidence 466778999999999999999874
Done!