Query 018228
Match_columns 359
No_of_seqs 196 out of 509
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 11:56:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018228.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018228hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zl8_A LIN-7; heterodimer, alp 17.2 60 0.0021 23.1 1.7 13 12-24 39-51 (53)
2 2qhq_A Unknown function protei 10.1 2.2E+02 0.0077 23.7 3.5 83 194-293 29-118 (125)
3 1kf6_D Fumarate reductase 13 k 8.4 8.3E+02 0.028 20.0 8.9 79 81-160 22-106 (119)
4 3kcn_A Adenylate cyclase homol 7.0 1.6E+02 0.0054 22.9 1.3 14 332-345 47-60 (151)
5 3ilh_A Two component response 5.7 2.1E+02 0.0071 21.6 1.3 16 330-345 57-72 (146)
6 3mn5_S Protein spire, actin, a 5.5 2.3E+02 0.0077 18.5 1.1 21 270-290 12-33 (38)
7 3cvo_A Methyltransferase-like 5.5 1.8E+02 0.0062 25.7 0.9 12 331-342 120-131 (202)
8 1wrg_A LH-1, light-harvesting 4.7 5E+02 0.017 18.5 2.6 21 197-217 31-51 (55)
9 2r25_B Osmosensing histidine p 4.6 2.6E+02 0.0089 21.1 1.2 14 332-345 51-64 (133)
10 2wx3_A MRNA-decapping enzyme 1 4.2 4.4E+02 0.015 18.6 1.9 11 16-26 29-39 (51)
No 1
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=17.25 E-value=60 Score=23.09 Aligned_cols=13 Identities=46% Similarity=0.994 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHH
Q 018228 12 AIYFNSIREVYEA 24 (359)
Q Consensus 12 aiy~d~iRd~YEA 24 (359)
+-|++.+||+||-
T Consensus 39 SdF~~aVREVYEh 51 (53)
T 1zl8_A 39 SEFFGAVREVYET 51 (53)
T ss_dssp CSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4589999999995
No 2
>2qhq_A Unknown function protein VPA0580; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE MLY; 1.76A {Vibrio parahaemolyticus} PDB: 2qm2_A*
Probab=10.10 E-value=2.2e+02 Score=23.66 Aligned_cols=83 Identities=17% Similarity=0.253 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhhhccccccccccc---CCC----CCchHHHHHhhcCcchHHHHHHhhcccCcceeeeeccCCCCCCCcc
Q 018228 194 CIEMLIAAVGHLFAFPYKEYAGAN---IGG----SRGLTGSLAHALKLNDFYHDTVHQFAPTYHDYVLYNHNEGDEGTRK 266 (359)
Q Consensus 194 CiEM~ifAilh~~AF~~k~Y~~~~---~~~----~~~~~~s~~~~~~~~D~~~D~~~~f~~~y~~y~~~~~~~~~~~~~~ 266 (359)
-+|=++.-|-.+|-|....|.... ..+ +|.++ +|...-++++ .++..-|+.-|++.|+-.+ +|+++
T Consensus 29 ~F~dtma~Id~~Y~ftPtaF~NG~~~N~AgeN~GSCKiF-aFA~l~~Ls~--~~TL~~FG~~Yr~dVL~~P-eG~dH--- 101 (125)
T 2qhq_A 29 EFETTMAVIEDNYDFTPAAFTNGNTQNDANENNGSCXIF-AFGLLNALDX--EATLACFGRFYREDVLLHP-ENNDH--- 101 (125)
T ss_dssp CHHHHHHHHHHHEEECCCCEEETTEEECTTSSHHHHHHH-HHHHHTTCCH--HHHHHHTTHHHHTTTTTCT-TCCCC---
T ss_pred eHHHHHHHHHHcCcccCccccCCceeccCCCcccchHHH-HHHHHcCCCH--HHHHHHHHHHHHHHHhcCC-CCCCh---
Confidence 345567778889999999997542 222 22233 7777788887 7999999999998999664 55432
Q ss_pred ccccccccChhhhHHHhhcCCCceeee
Q 018228 267 YRSRTFVPTGHEMDAVRRNKLDEIQLS 293 (359)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (359)
+.+...-+++.++|+..
T Consensus 102 ----------~NIRnFm~~Gw~GI~Fe 118 (125)
T 2qhq_A 102 ----------QNIRNFMVTGWEGIQFE 118 (125)
T ss_dssp ----------HHHHHHHHHGGGGEEES
T ss_pred ----------HHHHHHHHcCCCCceec
Confidence 33444446667777763
No 3
>1kf6_D Fumarate reductase 13 kDa hydrophobic protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: f.21.2.2 PDB: 1kfy_D* 1l0v_D* 2b76_D* 3cir_D* 3p4p_D* 3p4q_D* 3p4r_D* 3p4s_D*
Probab=8.43 E-value=8.3e+02 Score=20.00 Aligned_cols=79 Identities=16% Similarity=0.282 Sum_probs=53.9
Q ss_pred eeehhhHHHHHHHHHHHHHhcCcccCCCcCCCcch----hhH-HHHHHHHHHHHHHHHH-HHHHHHhhhcCCCCCcchhh
Q 018228 81 CVQFVILKPILVVATLILFANGKYKDGNFSPDQGY----LYI-TIIYTISYTMALYALV-LFYMACRDLLHPFNPVPKFI 154 (359)
Q Consensus 81 VLQyvivrPl~tii~iIl~~~G~Y~eg~~s~~~a~----lyl-~iI~niSv~lALY~L~-lFy~~~k~~L~p~~P~~KFl 154 (359)
=.-..++-|++.++.=|+-..|....+..+..... -|+ .++....+.+-|||=. -++..++| |+=+.|..|+.
T Consensus 22 Gm~sAl~~PvliLl~GillPlG~~~~~~lsY~~~~aFa~s~ig~l~ll~~i~lplWh~~HRihh~lHD-lkih~~~~~~~ 100 (119)
T 1kf6_D 22 GMWSAIIAPVMILLVGILLPLGLFPGDALSYERVLAFAQSFIGRVFLFLMIVLPLWCGLHRMHHAMHD-LKIHVPAGKWV 100 (119)
T ss_dssp HHHHHHTHHHHHHHHHTTGGGTCSSTTTTSHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCCTTHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhcccCCCcccccHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHhhhh-heeecCcchhh
Confidence 34456778888888888888898766655433222 222 3445555667777766 88888887 88888999988
Q ss_pred HHHHHH
Q 018228 155 MIKSVV 160 (359)
Q Consensus 155 ~IKlVV 160 (359)
|--+..
T Consensus 101 ~Yg~A~ 106 (119)
T 1kf6_D 101 FYGLAA 106 (119)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 875433
No 4
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=6.99 E-value=1.6e+02 Score=22.87 Aligned_cols=14 Identities=21% Similarity=0.752 Sum_probs=11.8
Q ss_pred CccccceeecccCC
Q 018228 332 APYDMALIDIDMSS 345 (359)
Q Consensus 332 ~~~~~~~~~~~~~~ 345 (359)
.|||++++|+++.+
T Consensus 47 ~~~dlvi~D~~l~~ 60 (151)
T 3kcn_A 47 DPFSVIMVDMRMPG 60 (151)
T ss_dssp CCCSEEEEESCCSS
T ss_pred CCCCEEEEeCCCCC
Confidence 47999999998854
No 5
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=5.71 E-value=2.1e+02 Score=21.62 Aligned_cols=16 Identities=25% Similarity=0.235 Sum_probs=12.8
Q ss_pred CCCccccceeecccCC
Q 018228 330 LSAPYDMALIDIDMSS 345 (359)
Q Consensus 330 ~~~~~~~~~~~~~~~~ 345 (359)
.+.++|++++|+++.+
T Consensus 57 ~~~~~dlvi~D~~l~~ 72 (146)
T 3ilh_A 57 AGRWPSIICIDINMPG 72 (146)
T ss_dssp SSCCCSEEEEESSCSS
T ss_pred cCCCCCEEEEcCCCCC
Confidence 3468999999998754
No 6
>3mn5_S Protein spire, actin, alpha skeletal muscle; WH2 domain, actin complex, contractIle protein-protei complex; HET: ATP LAB; 1.50A {Drosophila melanogaster}
Probab=5.48 E-value=2.3e+02 Score=18.55 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=14.7
Q ss_pred cccccChhhhHHHhhcC-CCce
Q 018228 270 RTFVPTGHEMDAVRRNK-LDEI 290 (359)
Q Consensus 270 ~~~~~~~~~~~~~~~~~-~~~~ 290 (359)
.+--|-.|.||..|+|+ |..|
T Consensus 12 c~p~preql~esir~g~elkqi 33 (38)
T 3mn5_S 12 CEPSPREQLMESIRKGKELKQI 33 (38)
T ss_pred ccCCcHHHHHHHHHcccccccc
Confidence 34445567789999998 6554
No 7
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=5.46 E-value=1.8e+02 Score=25.67 Aligned_cols=12 Identities=25% Similarity=0.163 Sum_probs=10.8
Q ss_pred CCccccceeecc
Q 018228 331 SAPYDMALIDID 342 (359)
Q Consensus 331 ~~~~~~~~~~~~ 342 (359)
.++||+++||.|
T Consensus 120 ~~~fDlIfIDg~ 131 (202)
T 3cvo_A 120 FRHPDVVLVDGR 131 (202)
T ss_dssp CCCCSEEEECSS
T ss_pred CCCCCEEEEeCC
Confidence 478999999997
No 8
>1wrg_A LH-1, light-harvesting protein B-880, beta chain; membrane protein, pigment binding, photosynthesis; NMR {Rhodospirillum rubrum}
Probab=4.65 E-value=5e+02 Score=18.48 Aligned_cols=21 Identities=19% Similarity=0.434 Sum_probs=16.7
Q ss_pred HHHHHHHhhhccccccccccc
Q 018228 197 MLIAAVGHLFAFPYKEYAGAN 217 (359)
Q Consensus 197 M~ifAilh~~AF~~k~Y~~~~ 217 (359)
..++.++|.-++-|+|+.+..
T Consensus 31 ~~iAvvAH~L~~~wrPWl~g~ 51 (55)
T 1wrg_A 31 FGVAAFAHLLVWIWRPWVPGP 51 (55)
T ss_dssp HHHHHHHHHHHSSCSSSSCCS
T ss_pred HHHHHHHHHHHHHhcccCCCc
Confidence 356778899999999998654
No 9
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=4.64 E-value=2.6e+02 Score=21.12 Aligned_cols=14 Identities=29% Similarity=0.729 Sum_probs=11.2
Q ss_pred CccccceeecccCC
Q 018228 332 APYDMALIDIDMSS 345 (359)
Q Consensus 332 ~~~~~~~~~~~~~~ 345 (359)
.++|+.|+|+++..
T Consensus 51 ~~~dlvllD~~mp~ 64 (133)
T 2r25_B 51 ENYNMIFMDVQMPK 64 (133)
T ss_dssp CCCSEEEECSCCSS
T ss_pred CCCCEEEEeCCCCC
Confidence 46899999998843
No 10
>2wx3_A MRNA-decapping enzyme 1A; structural protein, trimerization module, P-BODY component, asymmetric assembly; 2.31A {Homo sapiens}
Probab=4.17 E-value=4.4e+02 Score=18.58 Aligned_cols=11 Identities=9% Similarity=0.298 Sum_probs=8.7
Q ss_pred HHHHHHHHHHH
Q 018228 16 NSIREVYEAWV 26 (359)
Q Consensus 16 d~iRd~YEAfv 26 (359)
++++.++|||+
T Consensus 29 ~Fl~~IHeAYl 39 (51)
T 2wx3_A 29 SFLSTLHEVYL 39 (51)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 67788888875
Done!