BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018229
(359 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NEL|A Chain A, Aspartyl-Trna Synthetase Complexed With Aspartic Acid
pdb|3NEL|B Chain B, Aspartyl-Trna Synthetase Complexed With Aspartic Acid
pdb|3NEM|A Chain A, Aspartyl-Trna Synthetase Complexed With Aspartyl Adenylate
pdb|3NEM|B Chain B, Aspartyl-Trna Synthetase Complexed With Aspartyl Adenylate
pdb|3NEN|A Chain A, Unliganded Aspartyl-Trna Synthetase From Thermococcus
Kodakarensis
pdb|3NEN|B Chain B, Unliganded Aspartyl-Trna Synthetase From Thermococcus
Kodakarensis
Length = 438
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 86/180 (47%), Gaps = 18/180 (10%)
Query: 45 LAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD--LGQLVP---TG 99
L G++V+V GWV ++ G F ++ DG Q+ K D L +L+P +
Sbjct: 14 LNGQKVKVAGWVWEVKDLGGIKFLWIRDRDGIV----QITAPKKKVDPELFKLIPKLRSE 69
Query: 100 TCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIP-----KTKLTLEFLRDRIP 154
V VEG++ P+ K E+ +K+V +++ A+ P+P K K L+ D
Sbjct: 70 DVVAVEGVVNFTPKA-KLGFEILPEKIV---VLNRAETPLPLDPTGKVKAELDTRLDNRF 125
Query: 155 FRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDA 214
R + A+ +IR+++ A F + GF+ IHTP I + EG E+F + DA
Sbjct: 126 MDLRRPEVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATEGGTELFPMKYFEEDA 185
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 295 YTQDFFARQAFLTVSGQLQVE-TYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMA 353
+ +F AFL S QL + A + VY P FRAE +T+RHL E W ++ EMA
Sbjct: 176 FPMKYFEEDAFLAQSPQLYKQIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMA 235
Query: 354 F 354
F
Sbjct: 236 F 236
>pdb|1B8A|A Chain A, Aspartyl-trna Synthetase
pdb|1B8A|B Chain B, Aspartyl-trna Synthetase
Length = 438
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 87/186 (46%), Gaps = 30/186 (16%)
Query: 45 LAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD--LGQLVP---TG 99
L G++V+V GWV ++ G F ++ DG Q+ K D L +L+P +
Sbjct: 14 LNGQKVKVAGWVWEVKDLGGIKFLWIRDRDGIV----QITAPKKKVDPELFKLIPKLRSE 69
Query: 100 TCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIP-----------KTKLTLEF 148
V VEG++ P+ K E+ +K+V +++ A+ P+P T+L F
Sbjct: 70 DVVAVEGVVNFTPKA-KLGFEILPEKIV---VLNRAETPLPLDPTGKVKAELDTRLNNRF 125
Query: 149 LRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVT 208
+ R P + A+ +IR+++ A F + GF+ IHTP I + EG E+F +
Sbjct: 126 MDLRRP------EVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATEGGTELFPMK 179
Query: 209 TLISDA 214
DA
Sbjct: 180 YFEEDA 185
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 295 YTQDFFARQAFLTVSGQLQVE-TYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMA 353
+ +F AFL S QL E A + VY P FRAE +T+RHL E W ++ EMA
Sbjct: 176 FPMKYFEEDAFLAESPQLYKEIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMA 235
Query: 354 F 354
F
Sbjct: 236 F 236
>pdb|1X54|A Chain A, Crystal Structure Of Asparaginyl-trna Synthetase From
Pyrococcus Horikoshii Complexed With
Asparaginyl-adenylate
pdb|1X55|A Chain A, Crystal Structure Of Asparaginyl-Trna Synthetase From
Pyrococcus Horikoshii Complexed With
Asparaginyl-Adenylate Analogue
pdb|1X56|A Chain A, Crystal Structure Of Asparaginyl-Trna Synthetase From
Pyrococcus Horikoshii
Length = 434
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 37/59 (62%)
Query: 299 FFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDL 357
+F + A+L+ S QL +E + V++ P+FRAE S T RHL EFW +E E A+ DL
Sbjct: 178 YFDKYAYLSQSAQLYLEAAIFGLEKVWSLTPSFRAEKSRTRRHLTEFWHLELEAAWMDL 236
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 84/169 (49%), Gaps = 12/169 (7%)
Query: 45 LAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANL-QVIVDKDVADLGQLVPTGTCVY 103
L G++VR+ GWV T GK F ++ + G A + + +V ++ + + + + V
Sbjct: 14 LDGKKVRLAGWVYTNMRVGKKIFLWIRDSTGIVQAVVAKNVVGEETFEKAKKLGRESSVI 73
Query: 104 VEGMLK---NPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKT--KLTLEFLRDRIPFRPR 158
VEG++K P G E+ V+K+ + V +++PIP+ + + E L D R
Sbjct: 74 VEGIVKADERAPGGA----EVHVEKLEVIQAV--SEFPIPENPEQASPELLLDYRHLHIR 127
Query: 159 TNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQV 207
T +A+ +++ L A +L K G+ + PI+ T EG +F++
Sbjct: 128 TPKASAIMKVKETLIMAAREWLLKDGWHEVFPPILVTGAVEGGATLFKL 176
>pdb|1WYD|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From
Sulfolobus Tokodaii
pdb|1WYD|B Chain B, Crystal Structure Of Aspartyl-Trna Synthetase From
Sulfolobus Tokodaii
Length = 429
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 90/192 (46%), Gaps = 28/192 (14%)
Query: 47 GRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLG--QLVPTGTCVYV 104
G++V GWV R+ G F L G QV+VDK+ + G Q + + + V
Sbjct: 16 GKEVIWAGWVHLLRDLGGKKFIILRDKTGLG----QVVVDKNSSAFGISQELTQESVIQV 71
Query: 105 EGMLK---NPPEGTKQKIELRVQKVVDVGMVDPAKYPIP-----KTKLTLEF-LRDRIPF 155
G++K P G IEL + ++ ++ AK P+P K K ++ LR+R+
Sbjct: 72 RGIVKADKRAPRG----IELHAE---EITLLSKAKAPLPLDVSGKVKADIDTRLRERV-L 123
Query: 156 RPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVT-----TL 210
R + AV +I++ A L K+GF+ I TP I S EG ++F V
Sbjct: 124 DLRRQEMQAVIKIQSLALKAFRETLYKEGFIEIFTPKIIASATEGGAQLFPVIYFGKEAF 183
Query: 211 ISDADKLEKELI 222
++ + +L KEL+
Sbjct: 184 LAQSPQLYKELM 195
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 35/58 (60%)
Query: 299 FFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSD 356
+F ++AFL S QL E A V V+ P +RAE S T HLAEF ++ EMAF+D
Sbjct: 177 YFGKEAFLAQSPQLYKELMAGVVERVFEVAPAWRAEESDTPFHLAEFISMDVEMAFAD 234
>pdb|2XGT|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With The Sulphamoyl Analogue Of Asparaginyl-Adenylate
pdb|2XGT|B Chain B, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With The Sulphamoyl Analogue Of Asparaginyl-Adenylate
Length = 435
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 38/67 (56%)
Query: 291 GKIDYTQDFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEP 350
G + D+F Q+FLT S QL +ET + +V+ ++RAE S T RHLAE+ VE
Sbjct: 167 GSTLFNLDYFGEQSFLTQSSQLYLETCIPTLGDVFCIAQSYRAEKSRTRRHLAEYAHVEA 226
Query: 351 EMAFSDL 357
E F L
Sbjct: 227 ECPFITL 233
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 49 QVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIV-DKDVADLGQLVPTGTC-VYVEG 106
+V + GW+ R QGK S F + DG+ LQV++ DK L C V + G
Sbjct: 13 RVCIKGWIHRMRRQGK-SLMFFILRDGT--GFLQVLLMDKLCQTYDALTVNTECTVEIYG 69
Query: 107 MLKNPPEG 114
+K PEG
Sbjct: 70 AIKEVPEG 77
>pdb|2XTI|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With Atp:mg And L-Asp-Beta-Noh Adenylate:ppi:mg
pdb|2XTI|B Chain B, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With Atp:mg And L-Asp-Beta-Noh Adenylate:ppi:mg
Length = 437
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 38/67 (56%)
Query: 291 GKIDYTQDFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEP 350
G + D+F Q+FLT S QL +ET + +V+ ++RAE S T RHLAE+ VE
Sbjct: 169 GSTLFNLDYFGEQSFLTQSSQLYLETCIPTLGDVFCIAQSYRAEKSRTRRHLAEYAHVEA 228
Query: 351 EMAFSDL 357
E F L
Sbjct: 229 ECPFITL 235
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 49 QVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIV-DKDVADLGQLVPTGTC-VYVEG 106
+V + GW+ R QGK S F + DG+ LQV++ DK L C V + G
Sbjct: 15 RVCIKGWIHRMRRQGK-SLMFFILRDGT--GFLQVLLMDKLCQTYDALTVNTECTVEIYG 71
Query: 107 MLKNPPEG 114
+K PEG
Sbjct: 72 AIKEVPEG 79
>pdb|1EOV|A Chain A, Free Aspartyl-Trna Synthetase (Asprs) (E.C. 6.1.1.12) From
Yeast
Length = 487
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Query: 259 ISASVTELTKAKENLAKLEERSKLKP-GIPQKDGKIDYTQDFFARQAFLTVSGQLQVETY 317
I A V EL + K E K G P + G + +F +A+L S Q +
Sbjct: 180 IQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEVTYFKGKAYLAQSPQFNKQQL 239
Query: 318 ACA-VSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSD 356
A VY GP FRAE+S+T RH+ EF ++ EMAF +
Sbjct: 240 IVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEE 279
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 76/188 (40%), Gaps = 27/188 (14%)
Query: 46 AGRQVRVGGWVKTGREQGKGSFAFLEVND------GSCPANLQVIVDKDVADLGQLVPTG 99
+ ++V V R+QG + AFL + G AN + + K++ +
Sbjct: 35 SDKEVLFRARVHNTRQQG-ATLAFLTLRQQASLIQGLVKANKEGTISKNMVKWAGSLNLE 93
Query: 100 TCVYVEGMLKNPPE----GTKQKIELRVQKVVDVGMVDPAKYPI------------PKTK 143
+ V V G++K E T Q +E+ + K+ + P PI
Sbjct: 94 SIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISET-PEALPILLEDASRSEAEAEAAG 152
Query: 144 LTLEFLRDRIPFRP---RTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEG 200
L + L R+ +R RT T A+ RI+ + +L + F +HTP + + EG
Sbjct: 153 LPVVNLDTRLDYRVIDLRTVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEG 212
Query: 201 AGEMFQVT 208
+F+VT
Sbjct: 213 GSSVFEVT 220
>pdb|1ASY|A Chain A, Class Ii Aminoacyl Transfer Rna Synthetases: Crystal
Structure Of Yeast Aspartyl-Trna Synthetase Complexed
With Trna Asp
pdb|1ASY|B Chain B, Class Ii Aminoacyl Transfer Rna Synthetases: Crystal
Structure Of Yeast Aspartyl-Trna Synthetase Complexed
With Trna Asp
pdb|1ASZ|A Chain A, The Active Site Of Yeast Aspartyl-Trna Synthetase:
Structural And Functional Aspects Of The Aminoacylation
Reaction
pdb|1ASZ|B Chain B, The Active Site Of Yeast Aspartyl-Trna Synthetase:
Structural And Functional Aspects Of The Aminoacylation
Reaction
Length = 490
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Query: 259 ISASVTELTKAKENLAKLEERSKLKP-GIPQKDGKIDYTQDFFARQAFLTVSGQLQVETY 317
I A V EL + K E K G P + G + +F +A+L S Q +
Sbjct: 183 IQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEVTYFKGKAYLAQSPQFNKQQL 242
Query: 318 ACA-VSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSD 356
A VY GP FRAE+S+T RH+ EF ++ EMAF +
Sbjct: 243 IVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEE 282
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 76/188 (40%), Gaps = 27/188 (14%)
Query: 46 AGRQVRVGGWVKTGREQGKGSFAFLEVND------GSCPANLQVIVDKDVADLGQLVPTG 99
+ ++V V R+QG + AFL + G AN + + K++ +
Sbjct: 38 SDKEVLFRARVHNTRQQG-ATLAFLTLRQQASLIQGLVKANKEGTISKNMVKWAGSLNLE 96
Query: 100 TCVYVEGMLKNPPE----GTKQKIELRVQKVVDVGMVDPAKYPI------------PKTK 143
+ V V G++K E T Q +E+ + K+ + P PI
Sbjct: 97 SIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISET-PEALPILLEDASRSEAEAEAAG 155
Query: 144 LTLEFLRDRIPFRP---RTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEG 200
L + L R+ +R RT T A+ RI+ + +L + F +HTP + + EG
Sbjct: 156 LPVVNLDTRLDYRVIDLRTVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEG 215
Query: 201 AGEMFQVT 208
+F+VT
Sbjct: 216 GSSVFEVT 223
>pdb|1N9W|A Chain A, Crystal Structure Of The Non-Discriminating And Archaeal-
Type Aspartyl-Trna Synthetase From Thermus Thermophilus
pdb|1N9W|B Chain B, Crystal Structure Of The Non-Discriminating And Archaeal-
Type Aspartyl-Trna Synthetase From Thermus Thermophilus
pdb|3KFU|A Chain A, Crystal Structure Of The Transamidosome
pdb|3KFU|B Chain B, Crystal Structure Of The Transamidosome
pdb|3KFU|C Chain C, Crystal Structure Of The Transamidosome
pdb|3KFU|D Chain D, Crystal Structure Of The Transamidosome
Length = 422
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%)
Query: 298 DFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAF 354
D+F ++A+L S QL + VY P +R E HTSRHL E+ ++ EM F
Sbjct: 167 DYFEKRAYLAQSPQLYKQIMVGVFERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGF 223
>pdb|3M4P|A Chain A, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4P|B Chain B, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4P|C Chain C, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4P|D Chain D, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4Q|A Chain A, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
pdb|3M4Q|B Chain B, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
Length = 456
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 291 GKIDYTQDFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEP 350
G + +F A+LT S QL +E+ ++ + ++RAE S T RHLAE+ +E
Sbjct: 191 GSTLFKLQYFNEPAYLTQSSQLYLESVIASLGKSFCMLSSYRAEQSRTVRHLAEYLHLEA 250
Query: 351 EMAF 354
E+ F
Sbjct: 251 ELPF 254
>pdb|3I7F|A Chain A, Aspartyl Trna Synthetase From Entamoeba Histolytica
pdb|3I7F|B Chain B, Aspartyl Trna Synthetase From Entamoeba Histolytica
Length = 548
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 285 GIPQKDGKIDYTQDFFARQAFLTVSGQLQVETYACA-VSNVYTFGPTFRAEHSHTSRHLA 343
G + G + +F R+A+L S QL + V+ GP FRAE+S+T RHL
Sbjct: 273 GCSSEGGSNIFEVKYFDRKAYLAQSPQLYKQMAIMGDFRKVFEVGPVFRAENSNTRRHLT 332
Query: 344 EFWMVEPEM 352
EF ++ EM
Sbjct: 333 EFEGLDIEM 341
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 158 RTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQV 207
RT T A+ RI++A FL Q F+ IHTP + EG +F+V
Sbjct: 236 RTVTNIAIFRIQSACCGLFREFLTSQKFVEIHTPKLIGCSSEGGSNIFEV 285
>pdb|1EQR|A Chain A, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1EQR|B Chain B, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1EQR|C Chain C, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1IL2|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna
Synthetase:yeast Trnaasp:aspartyl-Adenylate Complex
pdb|1IL2|B Chain B, Crystal Structure Of The E. Coli Aspartyl-Trna
Synthetase:yeast Trnaasp:aspartyl-Adenylate Complex
Length = 590
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 69/169 (40%), Gaps = 24/169 (14%)
Query: 47 GRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD---LGQLVPTGTCVY 103
G+QV + GWV R + GS F+++ D +QV D D AD L + C+
Sbjct: 15 GQQVTLCGWVN--RRRDLGSLIFIDMRDRE--GIVQVFFDPDRADALKLASELRNEFCIQ 70
Query: 104 VEGMLKNPPEGTKQK------IE-----LRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDR 152
V G ++ E + IE L + DV +D + +L +L R
Sbjct: 71 VTGTVRARDEKNINRDMATGEIEVLASSLTIINRADVLPLDSNHVNTEEARLKYRYLDLR 130
Query: 153 IPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGA 201
P +A + R + F+ GFL I TP++T + EGA
Sbjct: 131 RP------EMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGA 173
>pdb|1C0A|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna Synthetase
: Trnaasp : Aspartyl-Adenylate Complex
Length = 585
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 69/169 (40%), Gaps = 24/169 (14%)
Query: 47 GRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD---LGQLVPTGTCVY 103
G+QV + GWV R + GS F+++ D +QV D D AD L + C+
Sbjct: 15 GQQVTLCGWVN--RRRDLGSLIFIDMRDRE--GIVQVFFDPDRADALKLASELRNEFCIQ 70
Query: 104 VEGMLKNPPEGTKQK------IE-----LRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDR 152
V G ++ E + IE L + DV +D + +L +L R
Sbjct: 71 VTGTVRARDEKNINRDMATGEIEVLASSLTIINRADVLPLDSNHVNTEEARLKYRYLDLR 130
Query: 153 IPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGA 201
P +A + R + F+ GFL I TP++T + EGA
Sbjct: 131 RP------EMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGA 173
>pdb|2Q5I|A Chain A, Crystal Structure Of Apo S581l Glycyl-Trna Synthetase
Mutant
Length = 691
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 23/102 (22%)
Query: 236 KLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKID- 294
+L ++++G+ V KLK DKA + + +V EL KA++ + + +E + L+P KD +D
Sbjct: 14 RLAVRQQGDLVRKLKEDKAPQVDVDKAVAEL-KARKRVLEAKELA-LQP----KDDIVDR 67
Query: 295 ------YTQDFFARQAFLTVSGQLQVETYACAVSNVYTFGPT 330
+ FF QAF G VS +Y FGP
Sbjct: 68 AKMEDTLKRRFFYDQAFAIYGG----------VSGLYDFGPV 99
>pdb|2Q5H|A Chain A, Crystal Structure Of Apo-Wildtype Glycyl-Trna Synthetase
Length = 691
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 23/102 (22%)
Query: 236 KLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKID- 294
+L ++++G+ V KLK DKA + + +V EL KA++ + + +E + L+P KD +D
Sbjct: 14 RLAVRQQGDLVRKLKEDKAPQVDVDKAVAEL-KARKRVLEAKELA-LQP----KDDIVDR 67
Query: 295 ------YTQDFFARQAFLTVSGQLQVETYACAVSNVYTFGPT 330
+ FF QAF G VS +Y FGP
Sbjct: 68 AKMEDTLKRRFFYDQAFAIYGG----------VSGLYDFGPV 99
>pdb|2PMF|A Chain A, The Crystal Structure Of A Human Glycyl-trna Synthetase
Mutant
Length = 693
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 23/102 (22%)
Query: 236 KLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKID- 294
+L ++++G+ V KLK DKA + + +V EL KA++ + + +E + L+P KD +D
Sbjct: 14 RLAVRQQGDLVRKLKEDKAPQVDVDKAVAEL-KARKRVLEAKELA-LQP----KDDIVDR 67
Query: 295 ------YTQDFFARQAFLTVSGQLQVETYACAVSNVYTFGPT 330
+ FF QAF G VS +Y FGP
Sbjct: 68 AKMEDTLKRRFFYDQAFAIYGG----------VSGLYDFGPV 99
>pdb|2PME|A Chain A, The Apo Crystal Structure Of The Glycyl-Trna Synthetase
pdb|2ZT5|A Chain A, Crystal Structure Of Human Glycyl-Trna Synthetase (Glyrs)
In Complex With Ap4a (Cocrystallized With Atp)
pdb|2ZT6|A Chain A, Crystal Structure Of Human Glycyl-Trna Synthetase (Glyrs)
In Complex With Ampcpp
pdb|2ZT7|A Chain A, Crystal Structure Of Human Glycyl-Trna Synthetase (Glyrs)
In Complex With Glycine And Atp
pdb|2ZT8|A Chain A, Crystal Structure Of Human Glycyl-Trna Synthetase (Glyrs)
In Complex With Gly-Amp Analog
pdb|2ZXF|A Chain A, Crystal Structure Of Human Glycyl-Trna Synthetase (Glyrs)
In Complex With Ap4a (Cocrystallized With Ap4a)
Length = 693
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 23/102 (22%)
Query: 236 KLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKID- 294
+L ++++G+ V KLK DKA + + +V EL KA++ + + +E + L+P KD +D
Sbjct: 14 RLAVRQQGDLVRKLKEDKAPQVDVDKAVAEL-KARKRVLEAKELA-LQP----KDDIVDR 67
Query: 295 ------YTQDFFARQAFLTVSGQLQVETYACAVSNVYTFGPT 330
+ FF QAF G VS +Y FGP
Sbjct: 68 AKMEDTLKRRFFYDQAFAIYGG----------VSGLYDFGPV 99
>pdb|2O96|A Chain A, Crystal Structure Of The Metal-Free Dimeric Human Mov34
Mpn Domain (Residues 1-177)
pdb|2O96|B Chain B, Crystal Structure Of The Metal-Free Dimeric Human Mov34
Mpn Domain (Residues 1-177)
Length = 178
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 51 RVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVE 105
R+ GW TG + K A E+ CP ++ VI+D DLG +PT + VE
Sbjct: 91 RIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKPKDLG--LPTEAYISVE 143
>pdb|2O95|A Chain A, Crystal Structure Of The Metal-Free Dimeric Human Mov34
Mpn Domain (Residues 1-186)
pdb|2O95|B Chain B, Crystal Structure Of The Metal-Free Dimeric Human Mov34
Mpn Domain (Residues 1-186)
Length = 187
Score = 35.0 bits (79), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 51 RVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVE 105
R+ GW TG + K A E+ CP ++ VI+D DLG +PT + VE
Sbjct: 91 RIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKPKDLG--LPTEAYISVE 143
>pdb|1EFW|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From Thermus
Thermophilus Complexed To Trnaasp From Escherichia Coli
pdb|1EFW|B Chain B, Crystal Structure Of Aspartyl-Trna Synthetase From Thermus
Thermophilus Complexed To Trnaasp From Escherichia Coli
pdb|1G51|A Chain A, Aspartyl Trna Synthetase From Thermus Thermophilus At 2.4
A Resolution
pdb|1G51|B Chain B, Aspartyl Trna Synthetase From Thermus Thermophilus At 2.4
A Resolution
pdb|1L0W|A Chain A, Aspartyl-Trna Synthetase-1 From Space-Grown Crystals
pdb|1L0W|B Chain B, Aspartyl-Trna Synthetase-1 From Space-Grown Crystals
Length = 580
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 167 RIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGA 201
R+R+ + A FL ++GF+ + TP +T S EGA
Sbjct: 145 RLRHRVIKAIWDFLDREGFVQVETPFLTKSTPEGA 179
>pdb|3TDE|A Chain A, Crystal Structure Of S-Adenosylmethionine Synthetase
Rv1392 From Mycobacterium Tuberculosis
pdb|3TDE|B Chain B, Crystal Structure Of S-Adenosylmethionine Synthetase
Rv1392 From Mycobacterium Tuberculosis
pdb|3TDE|C Chain C, Crystal Structure Of S-Adenosylmethionine Synthetase
Rv1392 From Mycobacterium Tuberculosis
pdb|3TDE|D Chain D, Crystal Structure Of S-Adenosylmethionine Synthetase
Rv1392 From Mycobacterium Tuberculosis
Length = 408
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 11/47 (23%)
Query: 29 RVLI----KSILTRPDGGAGLAGRQVRV---GGWVKTGREQGKGSFA 68
RVL+ K +L P G AGL GR++ V GGW + G G+F+
Sbjct: 247 RVLVNPTGKFVLGGPMGDAGLTGRKIIVDTYGGWAR----HGGGAFS 289
>pdb|3RV2|A Chain A, Crystal Structure Of S-Adenosylmethionine Synthetase From
Mycobacterium Marinum
pdb|3RV2|B Chain B, Crystal Structure Of S-Adenosylmethionine Synthetase From
Mycobacterium Marinum
Length = 407
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 11/47 (23%)
Query: 29 RVLI----KSILTRPDGGAGLAGRQVRV---GGWVKTGREQGKGSFA 68
RVL+ K +L P G AGL GR++ V GGW + G G+F+
Sbjct: 246 RVLVNPTGKFVLGGPMGDAGLTGRKIIVDTYGGWAR----HGGGAFS 288
>pdb|3U1D|A Chain A, The Structure Of A Protein With A Gntr Superfamily
Winged-Helix-Turn- Helix Domain From Halomicrobium
Mukohataei.
pdb|3U1D|B Chain B, The Structure Of A Protein With A Gntr Superfamily
Winged-Helix-Turn- Helix Domain From Halomicrobium
Mukohataei
Length = 151
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 97 PTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTK 143
P G E + +NP E T+ + V ++VD G+V+ K P+P+ K
Sbjct: 42 PDGVLSVEELLYRNPDE-TEANLRYHVDELVDRGIVE--KIPVPRAK 85
>pdb|2XZL|A Chain A, Upf1-Rna Complex
Length = 802
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 57/134 (42%), Gaps = 12/134 (8%)
Query: 157 PRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADK 216
P+ +I A++ ++ + A LQ+ P+ G G+ T++ K
Sbjct: 350 PKEFSIPNFAQLNSSQSNAVSHVLQR--------PLSLIQGPPGTGKTVTSATIVYHLSK 401
Query: 217 LEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKL 276
+ K+ I PS ++ +++ G V +L + RE + +SV+ L A NL
Sbjct: 402 IHKDRILVCAPSNVAVDHLAAKLRDLGLKVVRLTAK--SREDVESSVSNL--ALHNLVGR 457
Query: 277 EERSKLKPGIPQKD 290
+ +LK + KD
Sbjct: 458 GAKGELKNLLKLKD 471
>pdb|2RQS|A Chain A, 3d Structure Of Pin From The Psychrophilic Archeon
Cenarcheaum Symbiosum (Cspin)
Length = 97
Score = 27.7 bits (60), Expect = 9.4, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 16/72 (22%)
Query: 225 PPPSEAD-IEAAKLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLK 283
P S AD I+ + +++K++GEA+A V E KA E KL + +
Sbjct: 2 PMGSMADKIKCSHILVKKQGEALA---------------VQERLKAGEKFGKLAKELSID 46
Query: 284 PGIPQKDGKIDY 295
G ++DG + Y
Sbjct: 47 GGSAKRDGSLGY 58
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,460,405
Number of Sequences: 62578
Number of extensions: 432411
Number of successful extensions: 1318
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1284
Number of HSP's gapped (non-prelim): 39
length of query: 359
length of database: 14,973,337
effective HSP length: 100
effective length of query: 259
effective length of database: 8,715,537
effective search space: 2257324083
effective search space used: 2257324083
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)