Query 018229
Match_columns 359
No_of_seqs 223 out of 1585
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 11:57:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018229.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018229hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nem_A Aspartyl-tRNA synthetas 100.0 2.8E-59 9.7E-64 473.2 22.1 227 28-356 3-238 (438)
2 3m4p_A Ehasnrs, asparaginyl-tR 100.0 3.9E-59 1.3E-63 474.3 21.1 236 22-358 12-258 (456)
3 2xgt_A Asparaginyl-tRNA synthe 100.0 2.5E-58 8.5E-63 466.0 18.3 222 44-358 8-234 (435)
4 3i7f_A Aspartyl-tRNA synthetas 100.0 2.6E-57 9.1E-62 468.3 20.1 224 39-357 54-347 (548)
5 1c0a_A Aspartyl tRNA synthetas 100.0 2.6E-56 8.7E-61 465.6 21.5 231 28-358 2-242 (585)
6 1l0w_A Aspartyl-tRNA synthetas 100.0 4.2E-56 1.4E-60 463.3 22.6 233 27-358 2-248 (580)
7 1wyd_A Hypothetical aspartyl-t 100.0 4.4E-56 1.5E-60 448.9 21.5 229 27-357 2-235 (429)
8 3bju_A Lysyl-tRNA synthetase; 100.0 7.5E-56 2.6E-60 456.6 20.6 238 25-358 30-280 (521)
9 1eov_A ASPRS, aspartyl-tRNA sy 100.0 1.4E-54 4.6E-59 444.2 22.4 229 27-356 21-279 (487)
10 1n9w_A Aspartyl-tRNA synthetas 100.0 6.3E-55 2.2E-59 439.7 19.2 220 29-357 2-227 (422)
11 1x54_A Asparaginyl-tRNA synthe 100.0 8.5E-55 2.9E-59 440.1 20.1 228 27-357 2-236 (434)
12 1e1o_A Lysyl-tRNA synthetase, 100.0 8.2E-55 2.8E-59 447.2 19.2 237 25-358 38-287 (504)
13 4ex5_A Lysine--tRNA ligase; st 100.0 7.5E-55 2.6E-59 448.9 18.9 237 25-358 60-308 (529)
14 3a74_A Lysyl-tRNA synthetase; 100.0 5E-54 1.7E-58 440.4 17.4 237 25-358 30-278 (493)
15 4ah6_A Aspartate--tRNA ligase, 100.0 2.2E-51 7.6E-56 429.0 20.4 230 24-358 7-252 (617)
16 3a5y_A GENX, putative lysyl-tR 100.0 1.3E-32 4.4E-37 270.8 9.3 111 156-358 27-145 (345)
17 1nnh_A Asparaginyl-tRNA synthe 100.0 1.5E-29 5.3E-34 243.7 8.3 115 151-357 1-126 (294)
18 3qtc_A Pyrrolysyl-tRNA synthet 99.8 4.3E-22 1.5E-26 190.8 0.5 155 115-356 23-189 (290)
19 3dsq_A Pyrrolysyl-tRNA synthet 98.0 4.7E-06 1.6E-10 79.7 5.8 51 302-353 123-180 (288)
20 2rhq_A Phenylalanyl-tRNA synth 98.0 5.3E-06 1.8E-10 79.4 6.1 50 303-354 109-164 (294)
21 1b7y_A Phers, protein (phenyla 97.8 6E-05 2E-09 74.1 8.5 50 304-355 175-226 (350)
22 2i4l_A Proline-tRNA ligase; al 97.7 3.4E-05 1.2E-09 77.8 7.0 33 164-196 65-97 (458)
23 1qe0_A Histidyl-tRNA synthetas 97.7 3E-05 1E-09 76.7 6.2 34 164-197 14-47 (420)
24 1wu7_A Histidyl-tRNA synthetas 97.5 0.0002 6.7E-09 71.4 8.8 33 164-196 18-50 (434)
25 2dq3_A Seryl-tRNA synthetase; 97.5 0.00013 4.5E-09 73.3 7.5 34 164-197 170-203 (425)
26 1hc7_A Prolyl-tRNA synthetase; 97.5 0.00017 5.8E-09 73.4 8.1 34 164-197 42-75 (477)
27 1h4v_B Histidyl-tRNA synthetas 97.5 0.00019 6.6E-09 70.9 7.8 33 165-197 16-48 (421)
28 1evl_A Threonyl-tRNA synthetas 97.5 0.00011 3.8E-09 72.5 5.7 34 164-197 28-61 (401)
29 4e51_A Histidine--tRNA ligase; 97.4 0.00017 5.7E-09 73.2 6.9 33 164-196 44-76 (467)
30 1z7m_A ATP phosphoribosyltrans 97.4 0.00026 8.8E-09 69.1 8.0 33 164-196 34-66 (344)
31 1htt_A Histidyl-tRNA synthetas 97.4 0.00015 5.2E-09 71.7 6.2 33 164-196 16-48 (423)
32 1nyr_A Threonyl-tRNA synthetas 97.4 0.00025 8.7E-09 74.5 7.8 34 164-197 269-302 (645)
33 4g84_A Histidine--tRNA ligase, 97.4 0.00042 1.5E-08 69.1 9.0 32 164-195 26-57 (464)
34 2j3l_A Prolyl-tRNA synthetase; 97.4 0.00028 9.6E-09 72.8 7.9 33 164-196 45-77 (572)
35 3net_A Histidyl-tRNA synthetas 97.3 0.00028 9.5E-09 71.4 7.1 45 164-208 24-74 (465)
36 3od1_A ATP phosphoribosyltrans 97.3 0.00043 1.5E-08 68.9 7.8 34 164-197 22-55 (400)
37 1nj8_A Proline-tRNA synthetase 97.2 0.00046 1.6E-08 69.8 7.6 34 164-197 36-69 (459)
38 2k50_A Replication factor A re 97.2 0.0016 5.3E-08 53.3 9.1 82 46-132 15-105 (115)
39 3uh0_A Threonyl-tRNA synthetas 97.2 0.00064 2.2E-08 68.9 7.7 34 164-197 62-96 (460)
40 3rac_A Histidine-tRNA ligase; 97.1 0.00054 1.9E-08 67.6 6.5 31 166-196 37-67 (373)
41 1qf6_A THRRS, threonyl-tRNA sy 97.1 0.00059 2E-08 71.8 6.5 34 164-197 269-302 (642)
42 1nj1_A PROR, proline-tRNA synt 97.0 0.00051 1.8E-08 70.3 5.5 33 164-197 69-101 (501)
43 4g85_A Histidine-tRNA ligase, 97.0 0.001 3.5E-08 67.9 7.8 33 163-195 78-110 (517)
44 2dq0_A Seryl-tRNA synthetase; 97.0 0.00084 2.9E-08 68.1 6.8 34 164-197 191-224 (455)
45 3kdf_D Replication protein A 3 97.0 0.0062 2.1E-07 51.2 11.2 95 29-131 8-111 (132)
46 3a32_A Probable threonyl-tRNA 97.0 0.00072 2.5E-08 68.4 6.2 33 165-197 48-80 (471)
47 3kf6_A Protein STN1; OB fold, 97.0 0.0066 2.2E-07 53.3 11.5 77 48-131 48-128 (159)
48 3dm3_A Replication factor A; p 97.0 0.008 2.7E-07 49.0 11.3 80 47-133 14-101 (105)
49 3lc0_A Histidyl-tRNA synthetas 96.9 0.0016 5.4E-08 65.9 8.0 33 165-197 42-74 (456)
50 3err_A Fusion protein of micro 96.9 0.0022 7.7E-08 66.2 9.1 35 163-197 272-306 (536)
51 3lss_A Seryl-tRNA synthetase; 96.9 0.0011 3.8E-08 67.7 6.3 35 163-197 205-239 (484)
52 4hvc_A Bifunctional glutamate/ 96.9 0.0024 8.2E-08 65.8 8.8 34 164-197 59-92 (519)
53 1ses_A Seryl-tRNA synthetase; 96.8 0.0018 6.2E-08 65.0 7.4 34 164-197 164-197 (421)
54 4gop_B Putative uncharacterize 96.8 0.0079 2.7E-07 50.9 10.2 95 29-131 11-116 (136)
55 3qne_A Seryl-tRNA synthetase, 96.8 0.0011 3.6E-08 67.9 5.5 34 164-197 183-216 (485)
56 1wle_A Seryl-tRNA synthetase; 96.8 0.0059 2E-07 62.6 10.6 34 164-197 217-250 (501)
57 3e0e_A Replication protein A; 96.7 0.022 7.6E-07 45.5 11.6 78 47-132 11-96 (97)
58 3vbb_A Seryl-tRNA synthetase, 96.6 0.0039 1.3E-07 64.3 8.2 34 164-197 199-232 (522)
59 3ial_A Prolyl-tRNA synthetase; 96.4 0.0025 8.6E-08 65.6 4.8 34 164-197 53-86 (518)
60 3pco_A Phenylalanyl-tRNA synth 96.3 0.0046 1.6E-07 60.2 5.8 43 307-352 169-213 (327)
61 1ati_A Glycyl-tRNA synthetase; 96.1 0.0061 2.1E-07 62.3 6.3 34 164-197 37-72 (505)
62 2pi2_A Replication protein A 3 96.1 0.04 1.4E-06 51.8 11.3 98 26-131 45-151 (270)
63 12as_A Asparagine synthetase; 96.0 0.017 5.8E-07 56.0 8.3 56 301-356 64-125 (330)
64 1usy_A ATP phosphoribosyltrans 95.7 0.011 3.7E-07 55.7 5.4 28 322-353 71-98 (275)
65 1nnx_A Protein YGIW; structura 95.6 0.04 1.4E-06 45.5 8.0 82 30-130 26-108 (109)
66 2zt5_A Glycyl-tRNA synthetase; 95.4 0.0091 3.1E-07 63.5 4.1 33 164-196 99-132 (693)
67 3l4g_A Phenylalanyl-tRNA synth 95.0 0.044 1.5E-06 56.3 7.6 30 323-353 349-378 (508)
68 1o7i_A SSB, SSO2364, single st 94.9 0.11 3.8E-06 42.7 8.7 82 48-138 13-102 (119)
69 2cja_A Seryl-tRNA synthetase; 94.8 0.014 4.8E-07 60.1 3.4 34 164-197 229-263 (522)
70 3mf2_A BLL0957 protein; aminoa 94.8 0.014 4.9E-07 57.2 3.2 34 164-198 62-95 (346)
71 3kf8_A Protein STN1; OB fold; 94.1 0.41 1.4E-05 44.0 11.2 85 48-132 86-185 (220)
72 2kbn_A Conserved protein; nucl 94.1 0.67 2.3E-05 37.6 11.3 78 47-133 15-95 (109)
73 3kdf_A Replication protein A 1 93.5 0.55 1.9E-05 39.2 9.9 71 44-131 19-89 (121)
74 1ynx_A Replication factor-A pr 93.4 0.078 2.7E-06 43.4 4.6 81 49-133 16-110 (114)
75 3au7_A TIAS, putative uncharac 93.4 0.61 2.1E-05 46.5 11.8 76 45-132 282-362 (402)
76 3ikl_A DNA polymerase subunit 92.9 0.23 7.8E-06 50.4 7.9 48 304-351 147-208 (459)
77 2k75_A Uncharacterized protein 92.6 0.59 2E-05 37.8 8.6 79 48-139 14-99 (106)
78 3fhw_A Primosomal replication 92.1 0.49 1.7E-05 39.2 7.7 52 81-133 49-100 (115)
79 1g5h_A Mitochondrial DNA polym 92.0 0.12 4.1E-06 52.2 4.5 33 165-197 61-95 (454)
80 2hpi_A DNA polymerase III alph 91.4 0.22 7.4E-06 56.1 6.2 80 45-132 1040-1124(1220)
81 3cmq_A Phenylalanyl-tRNA synth 91.1 0.27 9.2E-06 49.1 6.0 48 301-350 111-160 (415)
82 1jmc_A Protein (replication pr 89.7 0.53 1.8E-05 42.7 6.3 84 48-133 19-114 (246)
83 2pi2_E Replication protein A 1 89.6 2.6 8.9E-05 36.1 10.2 72 43-131 39-110 (142)
84 1j6q_A Cytochrome C maturation 89.3 4.1 0.00014 34.7 11.1 77 44-137 29-110 (136)
85 4gop_A Putative uncharacterize 87.5 1.2 4.1E-05 36.7 6.3 56 44-111 15-70 (114)
86 1sr3_A APO-CCME; OB fold, beta 87.2 3.2 0.00011 35.3 9.1 78 44-138 25-106 (136)
87 3k8a_A Putative primosomal rep 86.4 1.5 5.1E-05 35.4 6.3 47 81-129 55-101 (103)
88 1txy_A Primosomal replication 85.3 2.3 7.7E-05 34.0 6.8 50 81-131 50-102 (104)
89 3tqy_A Single-stranded DNA-bin 84.7 3.1 0.0001 36.0 7.8 52 81-132 58-115 (158)
90 4gop_C Putative uncharacterize 82.1 1.4 4.8E-05 43.8 5.2 83 48-132 14-108 (444)
91 3mxn_B RECQ-mediated genome in 80.0 8.7 0.0003 33.2 8.7 72 48-131 59-130 (150)
92 3f2b_A DNA-directed DNA polyme 79.4 9.4 0.00032 42.4 11.0 80 47-131 17-103 (1041)
93 1se8_A Single-strand binding p 76.8 8.4 0.00029 36.6 8.6 81 49-131 131-233 (301)
94 3l4g_B Phenylalanyl-tRNA synth 75.4 6.1 0.00021 40.9 7.7 27 170-196 394-420 (589)
95 2fxq_A Single-strand binding p 75.0 8.1 0.00028 35.7 7.8 82 48-131 129-229 (264)
96 2kct_A Cytochrome C-type bioge 74.0 31 0.0011 27.3 10.1 76 44-133 5-86 (94)
97 3vdy_A SSB, single-stranded DN 73.0 2.9 9.9E-05 33.9 3.7 52 81-132 52-109 (116)
98 1v1q_A Primosomal replication 68.4 16 0.00055 30.8 7.4 52 81-132 67-120 (134)
99 2vw9_A Single-stranded DNA bin 68.0 4 0.00014 34.1 3.6 52 81-132 51-108 (134)
100 2du3_A O-phosphoseryl-tRNA syn 66.3 3 0.0001 43.0 2.9 54 301-354 178-238 (534)
101 1z9f_A Single-strand binding p 66.0 7.1 0.00024 33.5 4.8 52 81-132 65-122 (153)
102 3en2_A Probable primosomal rep 65.2 15 0.00052 29.4 6.4 46 81-127 50-95 (101)
103 1wjj_A Hypothetical protein F2 64.1 16 0.00056 31.1 6.7 59 66-132 62-120 (145)
104 3ull_A DNA binding protein; DN 61.5 8.1 0.00028 32.0 4.3 52 81-132 69-127 (132)
105 3koj_A Uncharacterized protein 57.5 15 0.00051 29.8 5.0 47 81-127 55-107 (108)
106 1xjv_A Protection of telomeres 57.0 52 0.0018 30.6 9.5 65 46-111 14-83 (294)
107 1qzg_A Protection of telomeres 56.7 97 0.0033 27.5 10.6 88 28-123 28-125 (187)
108 2du7_A O-phosphoseryl-tRNA syn 54.8 6.4 0.00022 40.7 2.9 45 308-353 199-249 (549)
109 2fxq_A Single-strand binding p 51.0 31 0.0011 31.7 6.8 52 81-132 54-110 (264)
110 3eiv_A Single-stranded DNA-bin 49.8 22 0.00074 32.0 5.3 48 81-128 55-108 (199)
111 3f1z_A Putative nucleic acid-b 48.6 24 0.00081 28.5 4.7 70 43-112 45-119 (133)
112 3lgj_A Single-stranded DNA-bin 48.4 18 0.00062 31.4 4.5 52 81-132 73-135 (169)
113 1fyj_A Multifunctional aminoac 47.5 52 0.0018 23.4 6.1 43 234-276 4-46 (57)
114 1qvc_A Single stranded DNA bin 46.9 6.7 0.00023 33.2 1.4 53 80-132 54-115 (145)
115 2odr_B Phosphoseryl-tRNA synth 45.7 11 0.00038 39.7 3.0 47 307-353 205-256 (648)
116 1gm5_A RECG; helicase, replica 45.1 11 0.00037 40.4 3.0 80 45-129 163-246 (780)
117 2odr_A Phosphoseryl-tRNA synth 45.1 11 0.00039 39.7 3.0 50 304-353 200-256 (665)
118 2odr_D Phosphoseryl-tRNA synth 44.8 12 0.00039 39.7 3.0 50 304-353 200-256 (685)
119 2k52_A Uncharacterized protein 44.8 50 0.0017 24.4 5.9 49 46-105 5-55 (80)
120 3ulp_A Single-strand binding p 44.7 31 0.0011 28.0 5.1 51 81-131 56-119 (124)
121 2b29_A Replication protein A 7 44.2 65 0.0022 26.4 7.0 62 67-132 44-108 (123)
122 1se8_A Single-strand binding p 43.8 26 0.00088 33.2 5.1 52 81-132 54-112 (301)
123 2odr_C Phosphoseryl-tRNA synth 43.6 12 0.00042 39.6 3.0 47 307-353 205-256 (701)
124 2k4k_A GSP13, general stress p 40.1 67 0.0023 26.2 6.5 49 46-105 7-61 (130)
125 4gs3_A Single-stranded DNA-bin 38.7 89 0.003 25.2 6.8 49 81-130 52-106 (107)
126 2djv_A Methionyl-tRNA syntheta 37.3 80 0.0027 24.1 6.0 52 227-278 10-61 (79)
127 3afp_A Single-stranded DNA-bin 36.8 23 0.00079 30.6 3.2 46 81-126 55-106 (168)
128 2khi_A 30S ribosomal protein S 31.5 72 0.0025 25.3 5.3 50 45-105 29-85 (115)
129 2eqs_A ATP-dependent RNA helic 29.1 1E+02 0.0035 23.9 5.7 53 45-105 11-70 (103)
130 2khj_A 30S ribosomal protein S 28.1 52 0.0018 25.9 3.7 50 45-105 30-85 (109)
131 1d2d_A TRNA synthetase, tRNA l 28.0 43 0.0015 24.2 2.9 39 238-276 5-43 (59)
132 1kl9_A Eukaryotic translation 27.7 1.1E+02 0.0036 26.8 6.0 51 46-105 15-71 (182)
133 2vl6_A SSO MCM N-TER, minichro 27.4 1.4E+02 0.0046 27.2 7.0 21 92-112 221-241 (268)
134 1eqq_A Single stranded DNA bin 27.3 17 0.00058 31.9 0.7 31 81-111 56-87 (178)
135 2a19_A EIF-2- alpha, eukaryoti 27.0 1.1E+02 0.0038 26.4 6.0 51 46-105 15-71 (175)
136 3pgz_A Single-stranded DNA-bin 26.4 38 0.0013 30.2 2.9 51 81-131 76-137 (193)
137 1wi5_A RRP5 protein homolog; S 25.6 85 0.0029 25.0 4.7 50 46-105 21-77 (119)
138 2cqo_A Nucleolar protein of 40 25.1 72 0.0025 25.7 4.2 50 46-105 22-77 (119)
139 4dam_A Single-stranded DNA-bin 24.5 36 0.0012 28.1 2.2 47 81-127 65-116 (128)
140 1ltl_A DNA replication initiat 22.9 1.2E+02 0.0039 28.0 5.6 32 92-123 208-239 (279)
141 1xjv_A Protection of telomeres 21.6 2.9E+02 0.0099 25.4 8.2 63 46-110 153-242 (294)
No 1
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=100.00 E-value=2.8e-59 Score=473.22 Aligned_cols=227 Identities=31% Similarity=0.502 Sum_probs=206.6
Q ss_pred cceeehhhhcCCCCCCCCCCCEEEEEEEEeecccCCCceeEEEEEecCCCCceEEEEEeCCh-----hhhccCCCCCcEE
Q 018229 28 DRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDV-----ADLGQLVPTGTCV 102 (359)
Q Consensus 28 ~r~~i~di~~~~~l~~~~~gk~V~I~GwV~siR~~Gk~kl~Fi~LRDgsg~~~lQVVv~~~~-----~~~~~~L~~esvV 102 (359)
++++|.+|. ..++|++|+|+|||+++|.+| |++|++|||++|. ||||++++. .+..+.|+.||+|
T Consensus 3 rt~~~~~l~------~~~~g~~V~v~Gwv~~~R~~g--~~~Fi~LrD~~g~--iQ~v~~~~~~~~~~~~~~~~l~~~~~V 72 (438)
T 3nem_A 3 RTHYSSEIT------EELNGQKVKVAGWVWEVKDLG--GIKFLWIRDRDGI--VQITAPKKKVDPELFKLIPKLRSEDVV 72 (438)
T ss_dssp CSCCGGGCC------GGGTTCEEEEEEEEEEEEEET--TEEEEEEEETTEE--EEEEEETTTSCHHHHHHGGGCCTTCEE
T ss_pred eEEEHHHcc------hhcCCCEEEEEEEEEEEecCC--CeEEEEEEECCee--EEEEEeCCcCCHHHHHHHhcCCCCCEE
Confidence 556676664 456899999999999999999 8999999999986 999998764 1235679999999
Q ss_pred EEEeEEeCCCCCCcccEEEEEeEEEEeecCCCCCCCCCCcC---cchhhhccCcCccCCchHHHHHHHHHHHHHHHHHHH
Q 018229 103 YVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTK---LTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTF 179 (359)
Q Consensus 103 ~V~G~v~~s~~~~~g~lEL~a~~i~vLs~a~~~~~Pi~~k~---~~~e~lr~~r~L~lR~~~~~ai~riRS~I~~~iR~f 179 (359)
.|+|+|.+++. .+|++||++++|+||++|. .++|++.+. ++.|+++++||||+|++.++++|++||.|++++|+|
T Consensus 73 ~V~G~v~~~~~-~~~~~el~~~~i~vl~~~~-~~lP~~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~Rs~i~~~iR~f 150 (438)
T 3nem_A 73 AVEGVVNFTPK-AKLGFEILPEKIVVLNRAE-TPLPLDPTGKVKAELDTRLDNRFMDLRRPEVMAIFKIRSSVFKAVRDF 150 (438)
T ss_dssp EEEEEEEECTT-STTSEEEEEEEEEEEECBC-SSCSSCTTSSSCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEeCCC-CCCcEEEEEEEEEEEecCC-CCCCCCccccccCCHHHHhhchHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999873 5689999999999999997 689987654 688999999999999999999999999999999999
Q ss_pred HHhCCcEEEccCeeecCCCCCCCCcceeeccccchhhhhhhhcCCCCCChhhHHHHHHHHHHhhhHHHhhhcccchhhhh
Q 018229 180 LQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAI 259 (359)
Q Consensus 180 L~~~gF~EV~TPiLt~~~~EGa~e~F~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (359)
|.++||+||+||+|++++||||+++|.+
T Consensus 151 ~~~~gF~EVeTPiL~~~~~eg~~~~f~~---------------------------------------------------- 178 (438)
T 3nem_A 151 FHENGFIEIHTPKIIATATEGGTELFPM---------------------------------------------------- 178 (438)
T ss_dssp HHHTTCEECCCCSEESSCSSCSSSCCEE----------------------------------------------------
T ss_pred HHHCCcEEEeCCEEecCCCCCCccceeE----------------------------------------------------
Confidence 9999999999999999999999998865
Q ss_pred hhhHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccccccccCccccccccHHHHHHHH-HccccceEEEeceeecCCCCC
Q 018229 260 SASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETY-ACAVSNVYTFGPTFRAEHSHT 338 (359)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~L~~S~ql~~e~~-~~~~~~Vy~~~p~fRaE~~~t 338 (359)
+||++++||+||||||+|++ ++|++|||+||||||||+++|
T Consensus 179 --------------------------------------~~~~~~~yL~~Spql~~q~l~~~g~~rvf~i~~~FR~E~~~t 220 (438)
T 3nem_A 179 --------------------------------------KYFEEDAFLAQSPQLYKQIMMASGLDRVYEIAPIFRAEEHNT 220 (438)
T ss_dssp --------------------------------------EETTEEEEECSCSHHHHHHGGGTTCCEEEEEEEEECCCSSCC
T ss_pred --------------------------------------eeCCccEEEecChHHHHHHHHhcCCCceEEEcceEECCCCCC
Confidence 47899999999999999986 588999999999999999999
Q ss_pred CCccccccccceeecccC
Q 018229 339 SRHLAEFWMVEPEMAFSD 356 (359)
Q Consensus 339 ~rHl~EF~mle~E~af~~ 356 (359)
.||++||||||+||+|+|
T Consensus 221 ~RH~pEFt~le~e~a~~~ 238 (438)
T 3nem_A 221 TRHLNEAWSIDSEMAFIE 238 (438)
T ss_dssp TTCCSEEEEEEEEEESCS
T ss_pred cccccceeeeeeeeccCc
Confidence 999999999999999998
No 2
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=100.00 E-value=3.9e-59 Score=474.26 Aligned_cols=236 Identities=23% Similarity=0.386 Sum_probs=199.0
Q ss_pred cccccccceeehhhhcCCCCCCCCCCCEEEEEEEEeecccCCCceeEEEEEecCCCCceEEEEEeCCh-hh--hccCCCC
Q 018229 22 QRHQFSDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDV-AD--LGQLVPT 98 (359)
Q Consensus 22 ~~~~~~~r~~i~di~~~~~l~~~~~gk~V~I~GwV~siR~~Gk~kl~Fi~LRDgsg~~~lQVVv~~~~-~~--~~~~L~~ 98 (359)
.+.+...|+.|+++. ++.|++|+|+|||+++|.+|| +++|++|||++|. ||||++++. .. ....|+.
T Consensus 12 ~~~~~~~~~~i~~~~-------~~~g~~V~v~Gwv~~~R~~Gk-~~~Fi~LrD~sg~--iQvv~~~~~~~~~~~~~~l~~ 81 (456)
T 3m4p_A 12 TPVETPIVCNIRDAA-------GLEGKLVTFKGWAYHIRKARK-TLIFVELRDGSGY--CQCVIFGKELCEPEKVKLLTR 81 (456)
T ss_dssp ----CCCCEECCSTT-------CCCSSEEEEEEEEEEEECCSS-SEEEEEEECSSCE--EEEEEESTTTTCHHHHTTCCT
T ss_pred cCCCcceEEEhhhhh-------hcCCCEEEEEEEEEEEecCCC-ceEEEEEEeCCcc--EEEEEecccchhhHHhhcCCC
Confidence 345666778888873 568999999999999999985 6999999999986 999998732 11 2346999
Q ss_pred CcEEEEEeEEeCCCCC--Cc-----ccEEEEEeEEEEeecCCCCCCC-CCCcCcchhhhccCcCccCCchHHHHHHHHHH
Q 018229 99 GTCVYVEGMLKNPPEG--TK-----QKIELRVQKVVDVGMVDPAKYP-IPKTKLTLEFLRDRIPFRPRTNTIAAVARIRN 170 (359)
Q Consensus 99 esvV~V~G~v~~s~~~--~~-----g~lEL~a~~i~vLs~a~~~~~P-i~~k~~~~e~lr~~r~L~lR~~~~~ai~riRS 170 (359)
||+|.|+|+|.+++.+ +. |++||++++|+||++|. .++| ...+.++.|+++++||||+|++.++++|++||
T Consensus 82 g~~V~V~G~v~~~~~~~~~~~~~t~g~~El~~~~i~vl~~a~-~~~~~~~~~~~~~e~r~~~R~LdlR~~~~~~~lr~Rs 160 (456)
T 3m4p_A 82 ECSLEITGRLNAYAGKNHPPEIADILNLEMQVTEWKVIGESP-IDLENIINKDSSIPQKMQNRHIVIRSEHTQQVLQLRS 160 (456)
T ss_dssp TCEEEEEEEEECCCSSSCCCSCTTBCSSEEEEEEEEEEECCC-GGGTTTSCTTCCHHHHHHTHHHHTTSHHHHHHHHHHH
T ss_pred ccEEEEEeEEEecCCcccCcccCCCCcEEEEEeEEEEEecCC-CCCcccccccCCHHHHhhchHHhhhcHHHHHHHHHHH
Confidence 9999999999988742 22 89999999999999996 3232 11235678999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEccCeeecCCCCCCCCcceeeccccchhhhhhhhcCCCCCChhhHHHHHHHHHHhhhHHHhhh
Q 018229 171 ALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLK 250 (359)
Q Consensus 171 ~I~~~iR~fL~~~gF~EV~TPiLt~~~~EGa~e~F~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (359)
.|+++||+||+++||+||+||+|++++||||+++|.+
T Consensus 161 ~i~~~iR~ff~~~gF~EVeTPiL~~s~~eGg~~~f~~------------------------------------------- 197 (456)
T 3m4p_A 161 EIQWYFRKYYHDNHFTEIQPPTIVKTQCEGGSTLFKL------------------------------------------- 197 (456)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEEC------CCCCEE-------------------------------------------
T ss_pred HHHHHHHHHHHhCCCEEEeCCeeecCCCCCccccccc-------------------------------------------
Confidence 9999999999999999999999999999999998854
Q ss_pred cccchhhhhhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccccccccCccccccccHHHHHHHHHccccceEEEece
Q 018229 251 SDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETYACAVSNVYTFGPT 330 (359)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~L~~S~ql~~e~~~~~~~~Vy~~~p~ 330 (359)
+||++++||+||||||||++++|++|||+||||
T Consensus 198 -----------------------------------------------~~~~~~~~L~~SpqL~lq~l~~g~~rVyeig~~ 230 (456)
T 3m4p_A 198 -----------------------------------------------QYFNEPAYLTQSSQLYLESVIASLGKSFCMLSS 230 (456)
T ss_dssp -----------------------------------------------EETTEEEEECSCCHHHHHTTHHHHSSEEEEEEE
T ss_pred -----------------------------------------------cccCCCcccccCHHHHHHHHHhccCcEEEEEhh
Confidence 689999999999999999988899999999999
Q ss_pred eecCCCCCCCccccccccceeecccCCC
Q 018229 331 FRAEHSHTSRHLAEFWMVEPEMAFSDLK 358 (359)
Q Consensus 331 fRaE~~~t~rHl~EF~mle~E~af~~l~ 358 (359)
||||+++|+||++||||||+||+|+|++
T Consensus 231 FR~E~~~t~rH~pEFtmlE~e~af~d~~ 258 (456)
T 3m4p_A 231 YRAEQSRTVRHLAEYLHLEAELPFISFE 258 (456)
T ss_dssp ECCCSCCCSSCCSEEEEEEEEEESCCHH
T ss_pred eecCCCCCCcchHHHHHhHHHHhcCCHH
Confidence 9999999999999999999999999863
No 3
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=100.00 E-value=2.5e-58 Score=466.04 Aligned_cols=222 Identities=30% Similarity=0.462 Sum_probs=195.3
Q ss_pred CCCCCEEEEEEEEeecccCCCceeEEEEEecCCCCceEEEEEeCChhh-h-ccCCCCCcEEEEEeEEeCCCCC--CcccE
Q 018229 44 GLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD-L-GQLVPTGTCVYVEGMLKNPPEG--TKQKI 119 (359)
Q Consensus 44 ~~~gk~V~I~GwV~siR~~Gk~kl~Fi~LRDgsg~~~lQVVv~~~~~~-~-~~~L~~esvV~V~G~v~~s~~~--~~g~l 119 (359)
++.|++|+|+|||+++|.+|| +++|++|||++|. ||||++++... + ...|+.||+|.|+|+|.+++.+ ++|++
T Consensus 8 ~~~~~~V~v~Gwv~~~R~~Gk-~~~Fi~LrD~~g~--iQvv~~~~~~~~~~~~~l~~~~~v~v~G~v~~~~~~~~~~g~~ 84 (435)
T 2xgt_A 8 KHRNERVCIKGWIHRMRRQGK-SLMFFILRDGTGF--LQVLLMDKLCQTYDALTVNTECTVEIYGAIKEVPEGKEAPNGH 84 (435)
T ss_dssp GGTTSEEEEEEEEEEEEECTT-SEEEEEEECSSCE--EEEEEEGGGGSSHHHHHCCTTCEEEEEEEEEECC------TTE
T ss_pred hcCCCEEEEEEEEEEecccCC-CcEEEEEEECCce--EEEEECCcchhHHHHhcCCCCCEEEEEEEEEecCCCcCCCCcE
Confidence 467999999999999999986 6999999999986 99999854211 1 1258999999999999987632 46899
Q ss_pred EEEEeEEEEeecCCC-CCCCCCCcCcchhhhccCcCccCCchHHHHHHHHHHHHHHHHHHHHHhCCcEEEccCeeecCCC
Q 018229 120 ELRVQKVVDVGMVDP-AKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDC 198 (359)
Q Consensus 120 EL~a~~i~vLs~a~~-~~~Pi~~k~~~~e~lr~~r~L~lR~~~~~ai~riRS~I~~~iR~fL~~~gF~EV~TPiLt~~~~ 198 (359)
||++++++||+++.+ ..+|++.+.++.|+++++||||+|++.++++|++||.|++++|+||+++||+||+||+|+++++
T Consensus 85 El~~~~~~vl~~~~p~~~~pl~~~~~~~e~r~~~R~Ldlr~~~~~~~~r~Rs~i~~~iR~ff~~~gFlEVeTPiL~~s~~ 164 (435)
T 2xgt_A 85 ELIADFWKIIGNAPPGGIDNVLNEEASVDKMLDNRHLVIRGENAAALLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQV 164 (435)
T ss_dssp EEEEEEEEEEECCCTTHHHHHCC--CCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESCCS
T ss_pred EEEEEEEEEeecCCCcccccccccCCCHHHHhhCeeeeecCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCeEeeccC
Confidence 999999999998532 2367777778899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcceeeccccchhhhhhhhcCCCCCChhhHHHHHHHHHHhhhHHHhhhcccchhhhhhhhHHHHHHHHHHHHHHHh
Q 018229 199 EGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEE 278 (359)
Q Consensus 199 EGa~e~F~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (359)
|||+++|.+
T Consensus 165 eG~~~~F~~----------------------------------------------------------------------- 173 (435)
T 2xgt_A 165 EGGSTLFNL----------------------------------------------------------------------- 173 (435)
T ss_dssp SCTTSCCEE-----------------------------------------------------------------------
T ss_pred CCchhceee-----------------------------------------------------------------------
Confidence 999998865
Q ss_pred hhccCCCCCCCCCCccccccccCccccccccHHHHHHHHHccccceEEEeceeecCCCCCCCccccccccceeecccCCC
Q 018229 279 RSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLK 358 (359)
Q Consensus 279 ~~~~~~~~p~~~~~~~~~~~~f~~~~~L~~S~ql~~e~~~~~~~~Vy~~~p~fRaE~~~t~rHl~EF~mle~E~af~~l~ 358 (359)
+||++++||+||||||||++++|++|||+||||||||+++|+||++||||||+||+|+|++
T Consensus 174 -------------------~~~g~~~~L~~SpqLylq~l~~g~~rvfeIg~~FR~E~~~t~RH~~EFT~lE~e~af~d~~ 234 (435)
T 2xgt_A 174 -------------------DYFGEQSFLTQSSQLYLETCIPTLGDVFCIAQSYRAEKSRTRRHLAEYAHVEAECPFITLD 234 (435)
T ss_dssp -------------------EETTEEEEECSCSHHHHHHHHHHHCSEEEEEEEECCCSSCCTTCCSEEEEEEEEEESCCHH
T ss_pred -------------------ccCCcccccCCChHHHHHHhhhccCceEEEecceecCCCCccccccceeEEEEEEecCCHH
Confidence 4899999999999999999888999999999999999999999999999999999999863
No 4
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=100.00 E-value=2.6e-57 Score=468.27 Aligned_cols=224 Identities=29% Similarity=0.422 Sum_probs=183.6
Q ss_pred CCCCCCCCCCEEEEEEEEeecccCCCceeEEEEEecCCCCceEEEEEeCCh------hhhccCCCCCcEEEEEeEEeCCC
Q 018229 39 PDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDV------ADLGQLVPTGTCVYVEGMLKNPP 112 (359)
Q Consensus 39 ~~l~~~~~gk~V~I~GwV~siR~~Gk~kl~Fi~LRDgsg~~~lQVVv~~~~------~~~~~~L~~esvV~V~G~v~~s~ 112 (359)
.++...+.|++|+|+|||+++|.+| |++|++|||++|. ||||++++. ..+.+.|+.||+|.|+|+|.+++
T Consensus 54 ~~l~~~~~g~~V~v~Gwv~~~R~~g--kl~Fi~LrD~~g~--iQ~v~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~ 129 (548)
T 3i7f_A 54 EELVPAMAEKTVTIRARVQAVRGKG--NMVFLFLRKGIYT--CQALVMKSETISKEFVQFCQKISAESICDITGIVKAVE 129 (548)
T ss_dssp GGCSGGGTTCEEEEEEEEEEEEECS--SEEEEEEEETTEE--EEEEEECSSSSCHHHHHHHHTCCTTEEEEEEEEEEECS
T ss_pred hhcchhcCCCEEEEEEEEEEEecCC--CeEEEEEEECCee--EEEEEECCCccCHHHHHHHhCCCCCCEEEEEEEEEeCC
Confidence 3445678999999999999999999 8999999999985 999998631 23567899999999999999986
Q ss_pred CC----CcccEEEEEeEEEEeecCCCCCCCCCCc----------------------------------------------
Q 018229 113 EG----TKQKIELRVQKVVDVGMVDPAKYPIPKT---------------------------------------------- 142 (359)
Q Consensus 113 ~~----~~g~lEL~a~~i~vLs~a~~~~~Pi~~k---------------------------------------------- 142 (359)
.+ ++|++||++++|+|||+|. .++|++.+
T Consensus 130 ~~~~~~~~~~~El~~~~i~vls~a~-~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 208 (548)
T 3i7f_A 130 KPIEKATQQDVEIHVTSIAVVSLAE-YPLPMQIEDLTFPSSVFKKQEEDIAKVDEKIAKFLKDNEGKDLTKRPLKDEYAK 208 (548)
T ss_dssp SCCTTSSSCSEEEEEEEEEEEECCC-BSCSSCSGGGSCCHHHHHHHHHHTTCC---------------------------
T ss_pred cccccCCCCcEEEEEeEEEEEecCC-CCCCCCchhccccccccccccccccccccccccccccccccccccccccccccc
Confidence 42 3689999999999999996 67888732
Q ss_pred ------------CcchhhhccCcCccCCchHHHHHHHHHHHHHHHHHHHHHhCCcEEEccCeeecCCCCCCCCcceeecc
Q 018229 143 ------------KLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 210 (359)
Q Consensus 143 ------------~~~~e~lr~~r~L~lR~~~~~ai~riRS~I~~~iR~fL~~~gF~EV~TPiLt~~~~EGa~e~F~v~~~ 210 (359)
.++.|+++++||||||++.++++|++||.|+++||+||.++||+||+||+|++++||||+++|.|
T Consensus 209 ~l~~~~~~~~~~~~~~e~rl~~R~LdLR~~~~~~~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~egga~~F~v--- 285 (548)
T 3i7f_A 209 LLKEKASAQKYVKVSQDTRLDNRMLDLRTVTNIAIFRIQSACCGLFREFLTSQKFVEIHTPKLIGCSSEGGSNIFEV--- 285 (548)
T ss_dssp ----CCCCCCCCCCCHHHHHTTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSBC----------------
T ss_pred cccccccccccccCCHHHhhhchhhccCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeCCEEecccCCCCcceeEE---
Confidence 23567888999999999999999999999999999999999999999999999999999998865
Q ss_pred ccchhhhhhhhcCCCCCChhhHHHHHHHHHHhhhHHHhhhcccchhhhhhhhHHHHHHHHHHHHHHHhhhccCCCCCCCC
Q 018229 211 ISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKD 290 (359)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 290 (359)
T Consensus 286 -------------------------------------------------------------------------------- 285 (548)
T 3i7f_A 286 -------------------------------------------------------------------------------- 285 (548)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccccCccccccccHHHHHHH-HHccccceEEEeceeecCCCCCCCccccccccceeeccc-CC
Q 018229 291 GKIDYTQDFFARQAFLTVSGQLQVET-YACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFS-DL 357 (359)
Q Consensus 291 ~~~~~~~~~f~~~~~L~~S~ql~~e~-~~~~~~~Vy~~~p~fRaE~~~t~rHl~EF~mle~E~af~-~l 357 (359)
+||++++||+||||||||+ +++||+|||+||||||||+++|+|||+||||||+||+|. ++
T Consensus 286 -------~~~~~~~yL~~Spql~~k~ll~~g~~rVfeI~~~FR~E~~~t~RHl~EFtmlE~e~af~~d~ 347 (548)
T 3i7f_A 286 -------KYFDRKAYLAQSPQLYKQMAIMGDFRKVFEVGPVFRAENSNTRRHLTEFEGLDIEMEIVENY 347 (548)
T ss_dssp -------------CCBCSCTHHHHHHHHTTTCCEEEEEEEECCCSCCCSSSCCSCEEEEEEEEECSSCT
T ss_pred -------ecCCCceEeccCHHHHHHHHHhcCcCcEEEEeeeEecCCCCCCCcchhhhchhhhhhhhcCH
Confidence 4688999999999999996 567899999999999999999999999999999999998 44
No 5
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=100.00 E-value=2.6e-56 Score=465.61 Aligned_cols=231 Identities=23% Similarity=0.313 Sum_probs=198.4
Q ss_pred cceeehhhhcCCCCCCCCCCCEEEEEEEEeecccCCCceeEEEEEecCCCCceEEEEEeCChh---hhccCCCCCcEEEE
Q 018229 28 DRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA---DLGQLVPTGTCVYV 104 (359)
Q Consensus 28 ~r~~i~di~~~~~l~~~~~gk~V~I~GwV~siR~~Gk~kl~Fi~LRDgsg~~~lQVVv~~~~~---~~~~~L~~esvV~V 104 (359)
+++++.++ ...+.|++|+|+|||+++|.+| +++|++|||++|. ||||++++.. +..+.|+.||+|.|
T Consensus 2 rt~~~~~l------~~~~~g~~V~l~GwV~~~R~~G--~~~Fi~LrD~~g~--iQvv~~~~~~~~~~~~~~l~~e~~V~V 71 (585)
T 1c0a_A 2 RTEYCGQL------RLSHVGQQVTLCGWVNRRRDLG--SLIFIDMRDREGI--VQVFFDPDRADALKLASELRNEFCIQV 71 (585)
T ss_dssp CSSCGGGC------CGGGTTCEEEEEEEEEEEEECS--SCEEEEEEETTEE--EEEEECGGGHHHHHHHTTCCTTCEEEE
T ss_pred ceeEHHHH------HHHhCCCEEEEEEEEEEEecCC--CcEEEEEEECCee--EEEEEeCCchHHHHHHhcCCCCCEEEE
Confidence 34455554 4577899999999999999999 8999999999986 9999986532 24567999999999
Q ss_pred EeEEeCCCCC------CcccEEEEEeEEEEeecCCCCCCCCCCcCcchhhhccCcCccCCchHHHHHHHHHHHHHHHHHH
Q 018229 105 EGMLKNPPEG------TKQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHT 178 (359)
Q Consensus 105 ~G~v~~s~~~------~~g~lEL~a~~i~vLs~a~~~~~Pi~~k~~~~e~lr~~r~L~lR~~~~~ai~riRS~I~~~iR~ 178 (359)
+|+|.+++.+ ++|++||++++|+|||+|.+.|+|+.. ..+.+.++++||||+|++.++++|++||+|++++|+
T Consensus 72 ~G~v~~~~~~~~n~~~~~geiEl~~~~i~vl~~a~~lP~~~~~-~~~~e~Rl~~R~LdLR~~~~~~~l~~Rs~i~~~iR~ 150 (585)
T 1c0a_A 72 TGTVRARDEKNINRDMATGEIEVLASSLTIINRADVLPLDSNH-VNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRR 150 (585)
T ss_dssp EEEEEECCTTTCCTTSTTTTEEEEEEEEEEEECCCSCSSCTTS-CCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHH
T ss_pred EeEEEccCcccccccCCCccEEEEEeEEEEEeccCCCCCCccc-cCCHhHhhhchHhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 9999998643 479999999999999999745667655 456788889999999999999999999999999999
Q ss_pred HHHhCCcEEEccCeeecCCCCCCCCcceeeccccchhhhhhhhcCCCCCChhhHHHHHHHHHHhhhHHHhhhcccchhhh
Q 018229 179 FLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREA 258 (359)
Q Consensus 179 fL~~~gF~EV~TPiLt~~~~EGa~e~F~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (359)
||+++||+||+||+|++++||||++ |.|++.
T Consensus 151 fl~~~gFlEVeTPiL~~s~~eGAr~-F~v~~~------------------------------------------------ 181 (585)
T 1c0a_A 151 FMDDHGFLDIETPMLTKATPEGARD-YLVPSR------------------------------------------------ 181 (585)
T ss_dssp HHHHTTCEECCCCSSBCCCSSSSCC-CEEECS------------------------------------------------
T ss_pred HHHhCCcEEEeCCEEecCCCCCCcc-ceeccc------------------------------------------------
Confidence 9999999999999999999999887 987531
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccccccccCccccccccHHHHHHH-HHccccceEEEeceeecCCCC
Q 018229 259 ISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVET-YACAVSNVYTFGPTFRAEHSH 337 (359)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~L~~S~ql~~e~-~~~~~~~Vy~~~p~fRaE~~~ 337 (359)
.+.+.-.||+||||||||+ +++||+|||+||||||||+++
T Consensus 182 ---------------------------------------~~~~~~y~L~qSPQl~kq~Lmv~G~~rvfqI~~~FR~E~~~ 222 (585)
T 1c0a_A 182 ---------------------------------------VHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLR 222 (585)
T ss_dssp ---------------------------------------SSTTCEEECCSCSHHHHHHHHHTTCCEEEEEEEEECCCCCB
T ss_pred ---------------------------------------ccCCceEeCccCHHHHHHHHHhcCCCceEEEeceeecCCCC
Confidence 0112223699999999997 578899999999999999999
Q ss_pred CCCccccccccceeecccCCC
Q 018229 338 TSRHLAEFWMVEPEMAFSDLK 358 (359)
Q Consensus 338 t~rHl~EF~mle~E~af~~l~ 358 (359)
+.||+ ||||||+||+|+|++
T Consensus 223 t~r~p-EFT~lE~e~af~d~~ 242 (585)
T 1c0a_A 223 ADRQP-EFTQIDVETSFMTAP 242 (585)
T ss_dssp TTBCS-EEEEEEEEEESCCHH
T ss_pred CCcCc-ccceeeeeecCCCHH
Confidence 99887 999999999999863
No 6
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=100.00 E-value=4.2e-56 Score=463.34 Aligned_cols=233 Identities=21% Similarity=0.357 Sum_probs=199.0
Q ss_pred ccceeehhhhcCCCCCCCCCCCEEEEEEEEeecccCCCceeEEEEEecCCCCceEEEEEeCCh--hhhccCCCCCcEEEE
Q 018229 27 SDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDV--ADLGQLVPTGTCVYV 104 (359)
Q Consensus 27 ~~r~~i~di~~~~~l~~~~~gk~V~I~GwV~siR~~Gk~kl~Fi~LRDgsg~~~lQVVv~~~~--~~~~~~L~~esvV~V 104 (359)
++++++.++ ...+.|++|+|+|||+++|.+| +++|++|||++|. ||||++++. .+..+.|+.||+|.|
T Consensus 2 ~rt~~~~~l------~~~~~g~~V~l~GwV~~~R~~G--~~~Fi~LrD~~g~--iQvv~~~~~~~~~~~~~l~~e~~V~V 71 (580)
T 1l0w_A 2 RRTHYAGSL------RETHVGEEVVLEGWVNRRRDLG--GLIFLDLRDREGL--VQLVAHPASPAYATAERVRPEWVVRA 71 (580)
T ss_dssp CCSSCGGGC------CGGGTTCEEEEEEEEEEEEECS--SCEEEEEEETTEE--EEEEECTTSTTHHHHTTCCTTCEEEE
T ss_pred CcEEEHHHh------HHHhCCCEEEEEEEEEEEecCC--CeEEEEEEECCee--EEEEEeCChhHHHHHhcCCCCcEEEE
Confidence 455666665 3567899999999999999999 8999999999986 999998653 234567999999999
Q ss_pred EeEEeCCCCC----CcccEEEEEeEEEEeecCCCCCCCCCC------c-CcchhhhccCcCccCCchHHHHHHHHHHHHH
Q 018229 105 EGMLKNPPEG----TKQKIELRVQKVVDVGMVDPAKYPIPK------T-KLTLEFLRDRIPFRPRTNTIAAVARIRNALA 173 (359)
Q Consensus 105 ~G~v~~s~~~----~~g~lEL~a~~i~vLs~a~~~~~Pi~~------k-~~~~e~lr~~r~L~lR~~~~~ai~riRS~I~ 173 (359)
+|+|.+++.. ++|++||++++|+|||+|.+.|||+++ + ..+.+.++++||||+|++.++++|++||+|+
T Consensus 72 ~G~v~~~~~~~~~~~~ge~Ei~~~~i~vl~~a~~lP~~i~~~~~~~~~~~~~~e~Rl~~RyLdLR~~~~~~~l~~Rs~i~ 151 (580)
T 1l0w_A 72 KGLVRLRPEPNPRLATGRVEVELSALEVLAEAKTPPFPVDAGWRGEEEKEASEELRLKYRYLDLRRRRMQENLRLRHRVI 151 (580)
T ss_dssp EEEEEECSSCCTTSTTTTEEEEEEEEEEEECCCCCSSCCSSGGGTCCCCCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCcCccCCCccEEEEEeEEEEeccCcCCCCCcchhccccccccCCHHHhhhhhHHHhcCHHHHHHHHHHHHHH
Confidence 9999988521 478999999999999999756788865 2 3466778899999999999999999999999
Q ss_pred HHHHHHHHhCCcEEEccCeeecCCCCCCCCcceeeccccchhhhhhhhcCCCCCChhhHHHHHHHHHHhhhHHHhhhccc
Q 018229 174 YATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDK 253 (359)
Q Consensus 174 ~~iR~fL~~~gF~EV~TPiLt~~~~EGa~e~F~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (359)
+++|+||+++||+||+||+|++++||||++ |.|++..
T Consensus 152 ~~iR~fl~~~gF~EVeTPiL~~s~~eGAr~-F~v~~~~------------------------------------------ 188 (580)
T 1l0w_A 152 KAIWDFLDREGFVQVETPFLTKSTPEGARD-FLVPYRH------------------------------------------ 188 (580)
T ss_dssp HHHHHHHHHTTCEECCCCSSBCCCSSSSCC-CEEECTT------------------------------------------
T ss_pred HHHHHHHHhCCcEEEeCCEEecCCCCCCCC-ccccccc------------------------------------------
Confidence 999999999999999999999999999877 9875310
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccccccccCccccccccHHHHHHH-HHccccceEEEeceee
Q 018229 254 AGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVET-YACAVSNVYTFGPTFR 332 (359)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~L~~S~ql~~e~-~~~~~~~Vy~~~p~fR 332 (359)
+..+|| ||+||||||||+ +++||+|||+||||||
T Consensus 189 -----------------------------------------~~~~~y----~L~qSPQl~kq~Lmv~G~~rvfqI~~~FR 223 (580)
T 1l0w_A 189 -----------------------------------------EPGLFY----ALPQSPQLFKQMLMVAGLDRYFQIARCFR 223 (580)
T ss_dssp -----------------------------------------STTEEE----ECCSCSHHHHHHHHHTTCSEEEEEEEEEC
T ss_pred -----------------------------------------cCCcee----ECccCHHHHHHHHHHhccCCeEEEeceee
Confidence 011232 699999999997 5788999999999999
Q ss_pred cCCCCCCCccccccccceeecccCCC
Q 018229 333 AEHSHTSRHLAEFWMVEPEMAFSDLK 358 (359)
Q Consensus 333 aE~~~t~rHl~EF~mle~E~af~~l~ 358 (359)
||++++.||+ ||||||+||+|+|++
T Consensus 224 ~E~~~~~r~p-EFT~lE~e~af~d~~ 248 (580)
T 1l0w_A 224 DEDLRADRQP-DFTQLDLEMSFVEVE 248 (580)
T ss_dssp CCCCCSSCCS-EEEEEEEEEESCCHH
T ss_pred CCCCCCCcCC-CccceeeeecCCCHH
Confidence 9999998887 999999999999863
No 7
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=100.00 E-value=4.4e-56 Score=448.90 Aligned_cols=229 Identities=30% Similarity=0.442 Sum_probs=207.6
Q ss_pred ccceeehhhhcCCCCCCCCCCCEEEEEEEEeecccCCCceeEEEEEecCCCCceEEEEEeCCh--hhhccCCCCCcEEEE
Q 018229 27 SDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDV--ADLGQLVPTGTCVYV 104 (359)
Q Consensus 27 ~~r~~i~di~~~~~l~~~~~gk~V~I~GwV~siR~~Gk~kl~Fi~LRDgsg~~~lQVVv~~~~--~~~~~~L~~esvV~V 104 (359)
+++++|++|. .++.|++|+|+|||+++|.+| +++|++|||++|. ||||++++. .+..+.|+.||+|.|
T Consensus 2 ~~~~~~~~l~------~~~~~~~V~v~Gwv~~~R~~g--~~~F~~lrD~~g~--iQ~v~~~~~~~~~~~~~l~~~~~v~v 71 (429)
T 1wyd_A 2 YRSHFIADVT------PEYDGKEVIWAGWVHLLRDLG--GKKFIILRDKTGL--GQVVVDKNSSAFGISQELTQESVIQV 71 (429)
T ss_dssp CCSSCTTTCC------GGGTTCEEEEEEEEEEEEEET--TEEEEEEEETTEE--EEEEECTTSTTHHHHTTCCTTCEEEE
T ss_pred ceEEEHHHhh------HHhCCCEEEEEEEEEEEecCC--CeEEEEEEECCee--EEEEEeCChHHHHHHHhCCCCCEEEE
Confidence 3455565553 467899999999999999999 8999999999986 999998653 234567999999999
Q ss_pred EeEEeCCCCCCcccEEEEEeEEEEeecCCCCCCCCCCcC---cchhhhccCcCccCCchHHHHHHHHHHHHHHHHHHHHH
Q 018229 105 EGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTK---LTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQ 181 (359)
Q Consensus 105 ~G~v~~s~~~~~g~lEL~a~~i~vLs~a~~~~~Pi~~k~---~~~e~lr~~r~L~lR~~~~~ai~riRS~I~~~iR~fL~ 181 (359)
+|+|.+++. .+|++||++++|+||++|. .++|++.++ ++.|+++++||||+|++.++++|++||.|++++|+||.
T Consensus 72 ~G~v~~~~~-~~~~~el~~~~~~vl~~~~-~~~P~~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~ff~ 149 (429)
T 1wyd_A 72 RGIVKADKR-APRGIELHAEEITLLSKAK-APLPLDVSGKVKADIDTRLRERVLDLRRQEMQAVIKIQSLALKAFRETLY 149 (429)
T ss_dssp EEEEEECSS-SGGGEEEEEEEEEEEECCC-SSCSSCSSSCCCCCHHHHHHTHHHHHTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEecCC-CCccEEEEEeEEEEeccCC-CCCCCCccccccCChhHhhhccceeccCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999984 4689999999999999996 689988765 78899999999999999999999999999999999999
Q ss_pred hCCcEEEccCeeecCCCCCCCCcceeeccccchhhhhhhhcCCCCCChhhHHHHHHHHHHhhhHHHhhhcccchhhhhhh
Q 018229 182 KQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAISA 261 (359)
Q Consensus 182 ~~gF~EV~TPiLt~~~~EGa~e~F~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (359)
++||+||+||+|+.+++||++++|.+
T Consensus 150 ~~gF~eV~TP~l~~~~~e~~~~~f~~------------------------------------------------------ 175 (429)
T 1wyd_A 150 KEGFIEIFTPKIIASATEGGAQLFPV------------------------------------------------------ 175 (429)
T ss_dssp HTTCEECCCCSEESSCSSTTCCCCEE------------------------------------------------------
T ss_pred hCCCEEEECCEEEeeCCCCCceeEEE------------------------------------------------------
Confidence 99999999999999999999999975
Q ss_pred hHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccccccccCccccccccHHHHHHHHHccccceEEEeceeecCCCCCCCc
Q 018229 262 SVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRH 341 (359)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~L~~S~ql~~e~~~~~~~~Vy~~~p~fRaE~~~t~rH 341 (359)
+||++++||+||||||+|++++|++|||+||||||+|++++.||
T Consensus 176 ------------------------------------~~~~~~~~L~~Spql~~~~~~~g~~rvf~ig~~FR~E~~~~~RH 219 (429)
T 1wyd_A 176 ------------------------------------IYFGKEAFLAQSPQLYKELMAGVVERVFEVAPAWRAEESDTPFH 219 (429)
T ss_dssp ------------------------------------EETTEEEEECSCCHHHHHHHHHHHSEEEEEEEEECCCCCCSSSC
T ss_pred ------------------------------------ecCCceEEecCCcHHHHHHHHhCcCceEEEcccccccCCccccc
Confidence 47889999999999999998889999999999999999999999
Q ss_pred cccccccceeecccCC
Q 018229 342 LAEFWMVEPEMAFSDL 357 (359)
Q Consensus 342 l~EF~mle~E~af~~l 357 (359)
++||||||+||+|.++
T Consensus 220 ~pEFtqle~e~~~~~~ 235 (429)
T 1wyd_A 220 LAEFISMDVEMAFADY 235 (429)
T ss_dssp CSEEEEEEEEEETCCH
T ss_pred cceeeEeeeeecCCCH
Confidence 9999999999999875
No 8
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=100.00 E-value=7.5e-56 Score=456.57 Aligned_cols=238 Identities=18% Similarity=0.252 Sum_probs=203.5
Q ss_pred ccccceeehhhhc-CCCC--CCCCCCCEEEEEEEEeecccCCCceeEEEEEecCCCCceEEEEEeCChh----hh---cc
Q 018229 25 QFSDRVLIKSILT-RPDG--GAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA----DL---GQ 94 (359)
Q Consensus 25 ~~~~r~~i~di~~-~~~l--~~~~~gk~V~I~GwV~siR~~Gk~kl~Fi~LRDgsg~~~lQVVv~~~~~----~~---~~ 94 (359)
.|..++++.++.. ..++ +....|++|+|+|||+++|.+|+ |++|++|||++|. ||||++++.. .+ .+
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Grv~~~R~~gk-k~~F~~LrD~sg~--iQvv~~~~~~~~~~~~~~~~~ 106 (521)
T 3bju_A 30 KFHVDISLTDFIQKYSHLQPGDHLTDITLKVAGRIHAKRASGG-KLIFYDLRGEGVK--LQVMANSRNYKSEEEFIHINN 106 (521)
T ss_dssp CCCCCSCHHHHHHHHTTCCTTCBCSSCCEEEEEEEEEEEESSS-SEEEEEEEETTEE--EEEEEEGGGSSCHHHHHHHHH
T ss_pred cCcCccchHHHHHHhhhhccccccCCcEEEEEEEEEEEecCCC-CcEEEEEEECCEE--EEEEEECCccCCHHHHHHHHh
Confidence 4777888888853 1222 23446889999999999999997 6999999999975 9999986531 22 34
Q ss_pred CCCCCcEEEEEeEEeCCCCCCcccEEEEEeEEEEeecCCCCCCCCCCc-CcchhhhccCcCccCC-chHHHHHHHHHHHH
Q 018229 95 LVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKT-KLTLEFLRDRIPFRPR-TNTIAAVARIRNAL 172 (359)
Q Consensus 95 ~L~~esvV~V~G~v~~s~~~~~g~lEL~a~~i~vLs~a~~~~~Pi~~k-~~~~e~lr~~r~L~lR-~~~~~ai~riRS~I 172 (359)
.|+.||+|.|+|+|.+++ +|++||++++|+||++|. .++|+... ..+.|+++++||||+| ++.++++|++||.|
T Consensus 107 ~l~~gd~V~V~G~v~~t~---~ge~ei~~~~i~~l~~~~-~~lP~~~~~~~~~e~r~r~RyLdLr~~~~~~~~~r~Rs~i 182 (521)
T 3bju_A 107 KLRRGDIIGVQGNPGKTK---KGELSIIPYEITLLSPCL-HMLPHLHFGLKDKETRYRQRYLDLILNDFVRQKFIIRSKI 182 (521)
T ss_dssp HCCTTCEEEEEEEEEECT---TCCEEEEEEEEEEEECCC-SCCCCC----CCHHHHHHCHHHHHHHCHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEEEEEEecC---CCCEEEEEeEEEEeecCC-CCCCCccccccChhhhhhhhhhhHhcCHHHHHHHHHHHHH
Confidence 689999999999999987 689999999999999997 67887543 3567899999999998 89999999999999
Q ss_pred HHHHHHHHHhCCcEEEccCeeecCCCCCCCCcceeeccccchhhhhhhhcCCCCCChhhHHHHHHHHHHhhhHHHhhhcc
Q 018229 173 AYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSD 252 (359)
Q Consensus 173 ~~~iR~fL~~~gF~EV~TPiLt~~~~EGa~e~F~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (359)
+++||+||.++||+||+||+|+++++|+++++|.+.
T Consensus 183 ~~~iR~f~~~~gF~EVeTPiL~~~~gGa~a~~F~t~-------------------------------------------- 218 (521)
T 3bju_A 183 ITYIRSFLDELGFLEIETPMMNIIPGGAVAKPFITY-------------------------------------------- 218 (521)
T ss_dssp HHHHHHHHHHTTCEECCCCSEESSCCSSSCCCCEEE--------------------------------------------
T ss_pred HHHHHHHHHHCCCEEEeCceeeccCCCccccceeee--------------------------------------------
Confidence 999999999999999999999987655557999653
Q ss_pred cchhhhhhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccccccccCccccccccHHHHHHHH-HccccceEEEecee
Q 018229 253 KAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETY-ACAVSNVYTFGPTF 331 (359)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~L~~S~ql~~e~~-~~~~~~Vy~~~p~f 331 (359)
.+||++++||+||||||+|++ ++||+|||+|||||
T Consensus 219 --------------------------------------------~~~~~~~~yL~~SpqL~lk~liv~g~~rVyeig~~F 254 (521)
T 3bju_A 219 --------------------------------------------HNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQF 254 (521)
T ss_dssp --------------------------------------------ETTTTEEEEECSCSHHHHHHHHHTTCCEEEEEEEEE
T ss_pred --------------------------------------------cccCCcceEeeCCHHHHHHHHHhcCcCceEEEEcce
Confidence 257899999999999999975 67899999999999
Q ss_pred ecCCCCCCCccccccccceeecccCCC
Q 018229 332 RAEHSHTSRHLAEFWMVEPEMAFSDLK 358 (359)
Q Consensus 332 RaE~~~t~rHl~EF~mle~E~af~~l~ 358 (359)
|||+++| ||++||||||+||||+|++
T Consensus 255 R~E~~~t-rH~pEFtmlE~e~af~d~~ 280 (521)
T 3bju_A 255 RNEGIDL-THNPEFTTCEFYMAYADYH 280 (521)
T ss_dssp CCSCCBT-TBCSEEEEEEEEEETCCHH
T ss_pred eCCCCCC-ccchhhhhhhhhhhcCCHH
Confidence 9999997 9999999999999999863
No 9
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=100.00 E-value=1.4e-54 Score=444.16 Aligned_cols=229 Identities=28% Similarity=0.422 Sum_probs=202.4
Q ss_pred ccceeehhhhcCCCCCCC-CCCCEEEEEEEEeecccCCCcee-EEEEEecCCCCceEEEEEeCC----h----hhhccCC
Q 018229 27 SDRVLIKSILTRPDGGAG-LAGRQVRVGGWVKTGREQGKGSF-AFLEVNDGSCPANLQVIVDKD----V----ADLGQLV 96 (359)
Q Consensus 27 ~~r~~i~di~~~~~l~~~-~~gk~V~I~GwV~siR~~Gk~kl-~Fi~LRDgsg~~~lQVVv~~~----~----~~~~~~L 96 (359)
..+++|++|. .. ++|++|+|+|||+++|.+| ++ +|++|||++|. ||||++++ . .++.+.|
T Consensus 21 ~~~~~~~~l~------~~~~~g~~V~v~GwV~~~R~~g--~~l~Fi~LrD~~g~--iQvv~~~~~~~~~~~~~~~~~~~l 90 (487)
T 1eov_A 21 QKRVKFVDLD------EAKDSDKEVLFRARVHNTRQQG--ATLAFLTLRQQASL--IQGLVKANKEGTISKNMVKWAGSL 90 (487)
T ss_dssp CCCCCGGGCC------TTTTTTCEEEEEEEEEEEEECS--SSEEEEEEEETTEE--EEEEEECCSSSSSCHHHHHHHTTC
T ss_pred cceeEHHHhc------ccccCCCEEEEEEEEEEeeccC--CccEEEEEEECCcc--EEEEEeccccccccHHHHHHHhcC
Confidence 4455666664 34 7899999999999999999 65 99999999985 99999764 1 1245679
Q ss_pred CCCcEEEEEeEEeCCCCC----CcccEEEEEeEEEEeecCCCCCCCCCCc---------------CcchhhhccCcCccC
Q 018229 97 PTGTCVYVEGMLKNPPEG----TKQKIELRVQKVVDVGMVDPAKYPIPKT---------------KLTLEFLRDRIPFRP 157 (359)
Q Consensus 97 ~~esvV~V~G~v~~s~~~----~~g~lEL~a~~i~vLs~a~~~~~Pi~~k---------------~~~~e~lr~~r~L~l 157 (359)
+.||+|.|+|+|.+++.+ ++|++||++++|+|||+|. .++|++.+ ..+.|+++++||||+
T Consensus 91 ~~e~~V~V~G~v~~~~~~~~~~~~g~~El~~~~i~vl~~a~-~~lP~~~~~~~~~~~~~~~~~~~~~~~e~r~~~R~LdL 169 (487)
T 1eov_A 91 NLESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETP-EALPILLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDL 169 (487)
T ss_dssp CTTCEEEEEEEEEECSSCCTTSSEEEEEEEEEEEEEEECCC-SSCSSCHHHHTSCHHHHHHTTCCCCCHHHHHHTHHHHT
T ss_pred CCCCEEEEEEEEEeCCCCCcCCCCCcEEEEEEEEEEeeccc-ccCCcchhhcccccccccccccccCChhhhhhcceeec
Confidence 999999999999998742 3589999999999999997 67898643 246789999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHhCCcEEEccCeeecCCCCCCCCcceeeccccchhhhhhhhcCCCCCChhhHHHHHH
Q 018229 158 RTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKL 237 (359)
Q Consensus 158 R~~~~~ai~riRS~I~~~iR~fL~~~gF~EV~TPiLt~~~~EGa~e~F~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (359)
|++.++++|++||.|++++|+||.++||+||+||+|+.+.+||++++|.+
T Consensus 170 r~~~~~~~~~~rs~i~~~ir~~~~~~gF~EV~TPil~~~~~~~ga~~f~~------------------------------ 219 (487)
T 1eov_A 170 RTVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEV------------------------------ 219 (487)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCSSSSSCCCEE------------------------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeCCEEEEecCCCCccccee------------------------------
Confidence 99999999999999999999999999999999999999999999999976
Q ss_pred HHHHhhhHHHhhhcccchhhhhhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccccccccCccccccccHHHHHHHH
Q 018229 238 VIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETY 317 (359)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~L~~S~ql~~e~~ 317 (359)
+||++++||+||||||+|++
T Consensus 220 ------------------------------------------------------------~~~~~~~~L~~Spql~~k~l 239 (487)
T 1eov_A 220 ------------------------------------------------------------TYFKGKAYLAQSPQFNKQQL 239 (487)
T ss_dssp ------------------------------------------------------------EETTEEEEECSCTHHHHHHH
T ss_pred ------------------------------------------------------------ccCCccEEcccChHHHHHHH
Confidence 36889999999999999986
Q ss_pred -HccccceEEEeceeecCCCCCCCccccccccceeecccC
Q 018229 318 -ACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSD 356 (359)
Q Consensus 318 -~~~~~~Vy~~~p~fRaE~~~t~rHl~EF~mle~E~af~~ 356 (359)
++|++|||+||||||+|++++.||++||||||+||+|.+
T Consensus 240 ~~~g~~rvy~ig~~FR~E~~~~~Rh~pEFt~le~e~af~~ 279 (487)
T 1eov_A 240 IVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEE 279 (487)
T ss_dssp HHTTCCEEEEEEEEECCCCCCCTTCCSEEEEEEEEEECSS
T ss_pred HhcCCCceEEEeccEecCCCCCCccchhhhhhhhhhhhhc
Confidence 678999999999999999999999999999999999973
No 10
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=100.00 E-value=6.3e-55 Score=439.68 Aligned_cols=220 Identities=27% Similarity=0.435 Sum_probs=153.8
Q ss_pred ceeehhhhcCCCCCCCCCCCEEEEEEEEeecccCCCceeEEEEEecCCCCceEEEEEeCChhhhccCCC-CCcEEEEEeE
Q 018229 29 RVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVP-TGTCVYVEGM 107 (359)
Q Consensus 29 r~~i~di~~~~~l~~~~~gk~V~I~GwV~siR~~Gk~kl~Fi~LRDgsg~~~lQVVv~~~~~~~~~~L~-~esvV~V~G~ 107 (359)
+++|++|. ++.|++|+|+|||+++|.+| |++|++|||++|. ||||+++ +.|+ .||+|.|+|+
T Consensus 2 ~~~~~~l~-------~~~~~~V~v~Gwv~~~R~~g--~~~F~~lrD~~g~--iQ~v~~~------~~l~~~~~~v~v~G~ 64 (422)
T 1n9w_A 2 RVLVRDLK-------AHVGQEVELLGFLHWRRDLG--RIQFLLLRDRSGV--VQVVTGG------LKLPLPESALRVRGL 64 (422)
T ss_dssp BCCGGGGG-------GCTTSEEEEEEEEEEEEECS--SEEEEEEEETTEE--EEEEEES------CCCCCTTCEEEEEEE
T ss_pred eEEHHHHH-------hcCCCEEEEEEEEEEEecCC--CeEEEEEEECCEE--EEEEEEc------cccCCCCCEEEEEEE
Confidence 45666664 46799999999999999999 8999999999986 9999976 4589 9999999999
Q ss_pred EeCCCCCCcccEEEEEeEEEEeecCCCCCCCCCCcC----cchhhhccCcCccCCchHHHHHHHHHHHHHHHHHHHHHhC
Q 018229 108 LKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTK----LTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQ 183 (359)
Q Consensus 108 v~~s~~~~~g~lEL~a~~i~vLs~a~~~~~Pi~~k~----~~~e~lr~~r~L~lR~~~~~ai~riRS~I~~~iR~fL~~~ 183 (359)
|.+++. .+|++||++++|+||++|. .++|++.++ ++.|+++++||||+|++.+++++++|+.|++++|+||.++
T Consensus 65 v~~~~~-~~~~~el~~~~~~vl~~~~-~~~P~~~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~~f~~~ 142 (422)
T 1n9w_A 65 VVENAK-APGGLEVQAKEVEVLSPAL-EPTPVEIPKEEWRANPDTLLEYRYVTLRGEKARAPLKVQAALVRGFRRYLDRQ 142 (422)
T ss_dssp EEECTT-STTSEEEEEEEEEEEECCC-SCCC-----------------CHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEecCC-CCccEEEEEeEEEEeccCC-cCCCCCccccccCCCHHHHhhhhHHhhcCHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 999984 4689999999999999996 689987765 7889999999999999999999999999999999999999
Q ss_pred CcEEEccCeeecCCCCCCCCcceeeccccchhhhhhhhcCCCCCChhhHHHHHHHHHHhhhHHHhhhcccchhhhhhhhH
Q 018229 184 GFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAISASV 263 (359)
Q Consensus 184 gF~EV~TPiLt~~~~EGa~e~F~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (359)
||+||+||+|+.+++||++++|.+
T Consensus 143 gF~EV~TPil~~~~~e~~~~~f~~-------------------------------------------------------- 166 (422)
T 1n9w_A 143 DFTEIFTPKVVRAGAEGGSGLFGV-------------------------------------------------------- 166 (422)
T ss_dssp TCEECCCC------------------------------------------------------------------------
T ss_pred CCEEEECCEEEEeCCCCCceeEEE--------------------------------------------------------
Confidence 999999999999999999999864
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCCCCCCccccccccCccccccccHHHHHHHHHccccceEEEeceeecCCCCCCCccc
Q 018229 264 TELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLA 343 (359)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~L~~S~ql~~e~~~~~~~~Vy~~~p~fRaE~~~t~rHl~ 343 (359)
+||++++||++|||||+|++++|++|||+||||||+|++++.||++
T Consensus 167 ----------------------------------~~~g~~~~L~~Spel~~~~l~~g~~rvf~ig~~FR~E~~~~~RH~p 212 (422)
T 1n9w_A 167 ----------------------------------DYFEKRAYLAQSPQLYKQIMVGVFERVYEVAPVWRMEEHHTSRHLN 212 (422)
T ss_dssp ----------------------------------------------CHHHHHHHHHHHSEEEEEEEC-------------
T ss_pred ----------------------------------eeCCCcEEeeeCHHHHHHHHhhCCCceeEEeCceECCCCCCCcccc
Confidence 3678899999999999999888899999999999999999999999
Q ss_pred cccccceeeccc-CC
Q 018229 344 EFWMVEPEMAFS-DL 357 (359)
Q Consensus 344 EF~mle~E~af~-~l 357 (359)
||||||+||+|+ |+
T Consensus 213 EFtqle~e~~~~~d~ 227 (422)
T 1n9w_A 213 EYLSLDVEMGFIADE 227 (422)
T ss_dssp CCEEEEEEEESCSSH
T ss_pred eeEEeeeeeeCCCCH
Confidence 999999999998 64
No 11
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=100.00 E-value=8.5e-55 Score=440.12 Aligned_cols=228 Identities=31% Similarity=0.548 Sum_probs=207.1
Q ss_pred ccceeehhhhcCCCCCCCCCCCEEEEEEEEeecccCCCceeEEEEEecCCCCceEEEEEeCCh-----hhhccCCCCCcE
Q 018229 27 SDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDV-----ADLGQLVPTGTC 101 (359)
Q Consensus 27 ~~r~~i~di~~~~~l~~~~~gk~V~I~GwV~siR~~Gk~kl~Fi~LRDgsg~~~lQVVv~~~~-----~~~~~~L~~esv 101 (359)
+++++|++|. .++.|++|+|+|||+++|.+| |++|++|||++|. ||||++++. .+..+.|+.||+
T Consensus 2 ~~~~~~~~l~------~~~~~~~V~v~G~v~~~R~~g--~~~F~~lrD~~g~--iQ~v~~~~~~~~~~~~~~~~l~~~~~ 71 (434)
T 1x54_A 2 IEKVYCQEVK------PELDGKKVRLAGWVYTNMRVG--KKIFLWIRDSTGI--VQAVVAKNVVGEETFEKAKKLGRESS 71 (434)
T ss_dssp CCCCCGGGCC------GGGTTCEEEEEEEEEEEEEET--TEEEEEEEETTEE--EEEEECHHHHCHHHHHHHHTCCTTCE
T ss_pred ceEEEHHHhh------HHhCCCEEEEEEEEEEEecCC--CeEEEEEEECCEE--EEEEEECCcCCHHHHHHHhcCCCCCE
Confidence 4567777765 357899999999999999999 8999999999986 999997542 123467999999
Q ss_pred EEEEeEEeCCCCCCcccEEEEEeEEEEeecCCCCCCCC--CCcCcchhhhccCcCccCCchHHHHHHHHHHHHHHHHHHH
Q 018229 102 VYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPI--PKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTF 179 (359)
Q Consensus 102 V~V~G~v~~s~~~~~g~lEL~a~~i~vLs~a~~~~~Pi--~~k~~~~e~lr~~r~L~lR~~~~~ai~riRS~I~~~iR~f 179 (359)
|.|+|+|.+++. .+|++||++++|+||++| .++|+ +.+.++.|+++++||||+|++.+++++++|+.|++++|+|
T Consensus 72 v~v~G~v~~~~~-~~~~~el~~~~~~vl~~~--~~~P~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~~ 148 (434)
T 1x54_A 72 VIVEGIVKADER-APGGAEVHVEKLEVIQAV--SEFPIPENPEQASPELLLDYRHLHIRTPKASAIMKVKETLIMAAREW 148 (434)
T ss_dssp EEEEEEEEECTT-SGGGEEEEEEEEEEEECC--SCCSSCSSGGGSCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEecCC-CCccEEEEEeEEEEeecC--CCCCCcccccCCCHHHhhhceeeeecCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999983 468999999999999999 57898 6767889999999999999999999999999999999999
Q ss_pred HHhCCcEEEccCeeecCCCCCCCCcceeeccccchhhhhhhhcCCCCCChhhHHHHHHHHHHhhhHHHhhhcccchhhhh
Q 018229 180 LQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAI 259 (359)
Q Consensus 180 L~~~gF~EV~TPiLt~~~~EGa~e~F~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (359)
|.++||+||+||+|+.+++||++++|.+
T Consensus 149 f~~~gF~eVeTP~l~~~~~e~~~~~f~~---------------------------------------------------- 176 (434)
T 1x54_A 149 LLKDGWHEVFPPILVTGAVEGGATLFKL---------------------------------------------------- 176 (434)
T ss_dssp HHHTTCEECCCCSEESCCSSCGGGCCEE----------------------------------------------------
T ss_pred HHHCCCEEEeCcEEEeecCCCCceeEEE----------------------------------------------------
Confidence 9999999999999999999999999865
Q ss_pred hhhHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccccccccCccccccccHHHHHHHHHccccceEEEeceeecCCCCCC
Q 018229 260 SASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTS 339 (359)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~L~~S~ql~~e~~~~~~~~Vy~~~p~fRaE~~~t~ 339 (359)
+||++++||+||||||+|+++++++|||+||||||+|++++.
T Consensus 177 --------------------------------------~~~~~~~~Lr~Spel~~~~~~~g~~rvf~ig~~FR~E~~~~~ 218 (434)
T 1x54_A 177 --------------------------------------KYFDKYAYLSQSAQLYLEAAIFGLEKVWSLTPSFRAEKSRTR 218 (434)
T ss_dssp --------------------------------------EETTEEEEECSCSHHHHHHHHHHHSEEEEEEEEECCCCCCCS
T ss_pred --------------------------------------eecCCcEEeccChHHHHHHHhcCccceEEEecceecCCCCCc
Confidence 478899999999999999988899999999999999999999
Q ss_pred CccccccccceeecccCC
Q 018229 340 RHLAEFWMVEPEMAFSDL 357 (359)
Q Consensus 340 rHl~EF~mle~E~af~~l 357 (359)
||++||||||+||+|.++
T Consensus 219 RH~pEFtqle~e~~~~~~ 236 (434)
T 1x54_A 219 RHLTEFWHLELEAAWMDL 236 (434)
T ss_dssp SCCSEEEEEEEEEETCCH
T ss_pred ccccEEEEeeEEEcCCCH
Confidence 999999999999999875
No 12
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=100.00 E-value=8.2e-55 Score=447.21 Aligned_cols=237 Identities=17% Similarity=0.213 Sum_probs=196.7
Q ss_pred ccccceeehhhhcCC-CCCCC---CCCCEEEEEEEEeecccCCCceeEEEEEecCCCCceEEEEEeCCh-----hh-hcc
Q 018229 25 QFSDRVLIKSILTRP-DGGAG---LAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDV-----AD-LGQ 94 (359)
Q Consensus 25 ~~~~r~~i~di~~~~-~l~~~---~~gk~V~I~GwV~siR~~Gk~kl~Fi~LRDgsg~~~lQVVv~~~~-----~~-~~~ 94 (359)
.|.+++++.++.... ++... ..|++|+|+|||+++|.+| |++|++|||++|. ||||++++. .+ ..+
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gwv~~~R~~g--k~~F~~LrD~sg~--iQvv~~~~~~~~~~~~~~~~ 113 (504)
T 1e1o_A 38 DFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMG--KASFVTLQDVGGR--IQLYVARDSLPEGVYNDQFK 113 (504)
T ss_dssp CCCCSCCHHHHHHHHTTCCHHHHHHHCCEEEEEEEEEEEEEET--TEEEEEEEETTEE--EEEEEETTTSSTTHHHHTGG
T ss_pred CCcCceEHHHHHHHhhccCccccccCCCEEEEEEEEEEEecCC--CcEEEEEEECCee--EEEEEECCcCCHHHHHHHHh
Confidence 467788888886311 11100 0288999999999999999 8999999999985 999998653 12 346
Q ss_pred CCCCCcEEEEEeEEeCCCCCCcccEEEEEeEEEEeecCCCCCCCCCCc-CcchhhhccCcCccCC-chHHHHHHHHHHHH
Q 018229 95 LVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKT-KLTLEFLRDRIPFRPR-TNTIAAVARIRNAL 172 (359)
Q Consensus 95 ~L~~esvV~V~G~v~~s~~~~~g~lEL~a~~i~vLs~a~~~~~Pi~~k-~~~~e~lr~~r~L~lR-~~~~~ai~riRS~I 172 (359)
.|+.||+|.|+|+|.+++ +|++||++++|+||++|. .++|.... ..+.|.++++||||+| ++.++++|++||.|
T Consensus 114 ~l~~g~~V~V~G~v~~~~---~ge~ei~~~~i~vl~~a~-~plP~k~~~~~~~e~r~r~RyLdL~~~~~~~~~~r~Rs~i 189 (504)
T 1e1o_A 114 KWDLGDIIGARGTLFKTQ---TGELSIHCTELRLLTKAL-RPLPDKFHGLQDQEVRYRQRYLDLIANDKSRQTFVVRSKI 189 (504)
T ss_dssp GCCTTCEEEEEEEEEECT---TCCEEEEEEEEEEEECCS-SCCCC-------TTHHHHTHHHHHHHCHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEEEEEEecC---CceEEEEEEEEEEecccC-CCCCccccCCcChhhhhhccchhhhcCHHHHHHHHHHHHH
Confidence 799999999999999987 589999999999999996 56774221 1246889999999995 89999999999999
Q ss_pred HHHHHHHHHhCCcEEEccCeeecCCCCCCCCcceeeccccchhhhhhhhcCCCCCChhhHHHHHHHHHHhhhHHHhhhcc
Q 018229 173 AYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSD 252 (359)
Q Consensus 173 ~~~iR~fL~~~gF~EV~TPiLt~~~~EGa~e~F~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (359)
++++|+||+++||+||+||+|+++.+|+++++|.|+
T Consensus 190 ~~~iR~f~~~~gFlEVeTPiL~~~~~Ga~ar~F~t~-------------------------------------------- 225 (504)
T 1e1o_A 190 LAAIRQFMVARGFMEVETPMMQVIPGGASARPFITH-------------------------------------------- 225 (504)
T ss_dssp HHHHHHHHHTTTCEECCCCSEESSCCSSCCCCCEEE--------------------------------------------
T ss_pred HHHHHHHHHHCCCEEEECCeEEecCCCCcccceEec--------------------------------------------
Confidence 999999999999999999999976544446899763
Q ss_pred cchhhhhhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccccccccCccccccccHHHHHHHH-HccccceEEEecee
Q 018229 253 KAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETY-ACAVSNVYTFGPTF 331 (359)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~L~~S~ql~~e~~-~~~~~~Vy~~~p~f 331 (359)
.++|++++||+||||||+|++ ++||+|||+|||||
T Consensus 226 --------------------------------------------~~~~~~~~yL~~SpqLylk~L~v~G~~rVyeIg~~F 261 (504)
T 1e1o_A 226 --------------------------------------------HNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNF 261 (504)
T ss_dssp --------------------------------------------ETTTTEEEEECSCSHHHHHHHHHHTCCEEEEEEEEE
T ss_pred --------------------------------------------cCCCCceEEeccCHHHHHHHHhhcCCCcEEEEcccc
Confidence 257899999999999999985 67899999999999
Q ss_pred ecCCCCCCCccccccccceeecccCCC
Q 018229 332 RAEHSHTSRHLAEFWMVEPEMAFSDLK 358 (359)
Q Consensus 332 RaE~~~t~rHl~EF~mle~E~af~~l~ 358 (359)
|||++++ ||++||||||+||+|+|++
T Consensus 262 R~E~~~~-rH~pEFt~lE~e~af~d~~ 287 (504)
T 1e1o_A 262 RNEGISV-RHNPEFTMMELYMAYADYH 287 (504)
T ss_dssp CCCCCCC--CCSEEEEEEEEEESCCHH
T ss_pred cCCCCCc-cccCceeeeeeeecCCCHH
Confidence 9999986 9999999999999999863
No 13
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=100.00 E-value=7.5e-55 Score=448.92 Aligned_cols=237 Identities=19% Similarity=0.232 Sum_probs=197.2
Q ss_pred ccccceeehhhhcCC-CCCCC---CCCCEEEEEEEEeecccCCCceeEEEEEecCCCCceEEEEEeCChh-----hhccC
Q 018229 25 QFSDRVLIKSILTRP-DGGAG---LAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA-----DLGQL 95 (359)
Q Consensus 25 ~~~~r~~i~di~~~~-~l~~~---~~gk~V~I~GwV~siR~~Gk~kl~Fi~LRDgsg~~~lQVVv~~~~~-----~~~~~ 95 (359)
.|.+++++.++.... ++... ..|++|+|+|||+++|.+| |++|++|||++|. ||||++++.. +..+.
T Consensus 60 ~~~~t~~~~~~~~~~~~~~~~~~~~~g~~V~v~GwV~~~R~~G--k~~Fi~LrD~sg~--iQvv~~~~~~~~~~~~~~~~ 135 (529)
T 4ex5_A 60 DFQPTHHAADLQTAYADADKEALEAKSLEVAIAGRMMLKRVMG--KASFATVQDGSGQ--IQFFVTPADVGAETYDAFKK 135 (529)
T ss_dssp CCCCCCCHHHHHHHTTTCCHHHHHHHCCEEEEEEEEEEEEEET--TEEEEEEECSSCE--EEEEECHHHHCHHHHHHHHT
T ss_pred CCcCceEHHHHHHHhhccCccccccCCcEEEEEEEEEeeecCC--CeEEEEEEeCCee--EEEEEECCcCCHHHHHHHhc
Confidence 367778888876421 11111 1288999999999999999 8999999999985 9999987531 23467
Q ss_pred CCCCcEEEEEeEEeCCCCCCcccEEEEEeEEEEeecCCCCCCCCCCcC-cchhhhccCcCccCC-chHHHHHHHHHHHHH
Q 018229 96 VPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTK-LTLEFLRDRIPFRPR-TNTIAAVARIRNALA 173 (359)
Q Consensus 96 L~~esvV~V~G~v~~s~~~~~g~lEL~a~~i~vLs~a~~~~~Pi~~k~-~~~e~lr~~r~L~lR-~~~~~ai~riRS~I~ 173 (359)
|+.||+|.|+|+|.+++ +|++||++++|+||++|. .++|..... .+.|+++++||||+| ++.++++|++||.|+
T Consensus 136 l~~gd~V~V~G~v~~t~---~gelel~~~~i~vLs~a~-~plP~k~~~l~d~e~r~r~RyLdLr~~~~~~~~fr~Rs~i~ 211 (529)
T 4ex5_A 136 WDLGDIVAARGVLFRTN---KGELSVKCTQLRLLAKAL-RPLPDKFHGLADQETRYRQRYVDLIVTPETRTTFRARTKAI 211 (529)
T ss_dssp CCTTCEEEEEEEEEECT---TSCEEEEEEEEEEEECCS-SCCCC------CTTHHHHTHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEEEEEEcC---CCcEEEEEEEEEEEecCC-CCCCccccCCcChhhhhhhhhhhhhcCHHHHHHHHHHHHHH
Confidence 99999999999999987 689999999999999996 456643211 245789999999997 899999999999999
Q ss_pred HHHHHHHHhCCcEEEccCeeecCCCCCCCCcceeeccccchhhhhhhhcCCCCCChhhHHHHHHHHHHhhhHHHhhhccc
Q 018229 174 YATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDK 253 (359)
Q Consensus 174 ~~iR~fL~~~gF~EV~TPiLt~~~~EGa~e~F~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (359)
++||+||+++||+||+||+|+++.+|+++++|.+.
T Consensus 212 ~~iR~ff~~~gFlEVeTPiL~~~~gGA~a~pF~t~--------------------------------------------- 246 (529)
T 4ex5_A 212 ASIRKFMGDADFMEVETPMLHPIPGGAAAKPFVTH--------------------------------------------- 246 (529)
T ss_dssp HHHHHHHHHTTCEECCCCSEESSCCSSSSCCCEEE---------------------------------------------
T ss_pred HHHHHHHHHCCCEEEeCCeeeccCCCCcccccccc---------------------------------------------
Confidence 99999999999999999999976433345889652
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccccccccCccccccccHHHHHHH-HHccccceEEEeceee
Q 018229 254 AGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVET-YACAVSNVYTFGPTFR 332 (359)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~L~~S~ql~~e~-~~~~~~~Vy~~~p~fR 332 (359)
.++|+.++||+||||||||+ +++||+|||+||||||
T Consensus 247 -------------------------------------------~n~~~~~~yL~~SpqLylk~L~v~G~~rVyeIg~~FR 283 (529)
T 4ex5_A 247 -------------------------------------------HNALDMEMFLRIAPELYLKRLIVGGFERVFEINRNFR 283 (529)
T ss_dssp -------------------------------------------ETTTTEEEEECSCSHHHHHHHHHTTCSEEEEEEEEEC
T ss_pred -------------------------------------------cccCCcceecccCHHHHHHHHHhcCCCcEEEeehhee
Confidence 25789999999999999997 5789999999999999
Q ss_pred cCCCCCCCccccccccceeecccCCC
Q 018229 333 AEHSHTSRHLAEFWMVEPEMAFSDLK 358 (359)
Q Consensus 333 aE~~~t~rHl~EF~mle~E~af~~l~ 358 (359)
||+++ .||++||||||+||||+|++
T Consensus 284 ~E~~~-~rH~pEFtmlE~e~af~d~~ 308 (529)
T 4ex5_A 284 NEGVS-PRHNPEFTMMEFYAAYTDYR 308 (529)
T ss_dssp CSCCB-TTBCSEEEEEEEEEETCCHH
T ss_pred cCCCC-CCcccHhHhhhhhhhcCCHH
Confidence 99998 59999999999999999863
No 14
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=100.00 E-value=5e-54 Score=440.43 Aligned_cols=237 Identities=19% Similarity=0.252 Sum_probs=198.8
Q ss_pred ccccceeehhhhcCC-CCCCC---CCCCEEEEEEEEeecccCCCceeEEEEEecCCCCceEEEEEeCCh-----hhhccC
Q 018229 25 QFSDRVLIKSILTRP-DGGAG---LAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDV-----ADLGQL 95 (359)
Q Consensus 25 ~~~~r~~i~di~~~~-~l~~~---~~gk~V~I~GwV~siR~~Gk~kl~Fi~LRDgsg~~~lQVVv~~~~-----~~~~~~ 95 (359)
.|.+++++.++.... ++... ..|++|+|+|||+++|.+| |++|++|||++|. ||||++++. .+..+.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gwv~~~R~~g--k~~F~~LrD~sg~--iQvv~~~~~~~~~~~~~~~~ 105 (493)
T 3a74_A 30 RFERTHKAEELFELYGDLSKEELEEQQIEVAVAGRIMTKRGMG--KAGFAHIQDVTGQ--IQIYVRQDDVGEQQYELFKI 105 (493)
T ss_dssp CCCCSCCHHHHHHHHTTSCHHHHHHHCCEEEEEEEEEEEEEET--TEEEEEEEETTEE--EEEEEEHHHHHHHHHHHHHH
T ss_pred CCcCceehHHHHHhhccccchhhccCCCEEEEEEEEEEEecCC--CcEEEEEEECCEe--EEEEEECCcCCHHHHHHHhc
Confidence 467778888886311 11100 1288999999999999999 8999999999985 999998653 123356
Q ss_pred CCCCcEEEEEeEEeCCCCCCcccEEEEEeEEEEeecCCCCCCCCCCc-CcchhhhccCcCccCC-chHHHHHHHHHHHHH
Q 018229 96 VPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKT-KLTLEFLRDRIPFRPR-TNTIAAVARIRNALA 173 (359)
Q Consensus 96 L~~esvV~V~G~v~~s~~~~~g~lEL~a~~i~vLs~a~~~~~Pi~~k-~~~~e~lr~~r~L~lR-~~~~~ai~riRS~I~ 173 (359)
|+.||+|.|+|+|.+++ +|++||++++|+||++|. .++|.... ..+.|.++++||||+| ++.++++|++||.|+
T Consensus 106 l~~g~~v~V~G~v~~~~---~ge~ei~~~~i~vl~~~~-~plP~k~~~~~~~e~r~r~RyldL~~~~~~~~~~r~Rs~i~ 181 (493)
T 3a74_A 106 SDLGDIVGVRGTMFKTK---VGELSIKVSSYEFLTKAL-RPLPEKYHGLKDIEQRYRQRYLDLIMNPESKKTFITRSLII 181 (493)
T ss_dssp CCTTCEEEEEEEEEECT---TCCEEEEEEEEEEEECCS-SCCCCC-----CHHHHHHTHHHHHHHCTHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEEEEEeCC---CCcEEEEEEEEEEccccc-CCCCccccCCCCHhhhhhcchhhhhcCHHHHHHHHHHHHHH
Confidence 99999999999999987 589999999999999996 56674221 1246889999999995 899999999999999
Q ss_pred HHHHHHHHhCCcEEEccCeeecCCCCCCCCcceeeccccchhhhhhhhcCCCCCChhhHHHHHHHHHHhhhHHHhhhccc
Q 018229 174 YATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDK 253 (359)
Q Consensus 174 ~~iR~fL~~~gF~EV~TPiLt~~~~EGa~e~F~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (359)
+++|+||.++||+||+||+|+++.+|+++++|.+.
T Consensus 182 ~~iR~ff~~~gF~EVeTPiL~~~~~Ga~a~~F~~~--------------------------------------------- 216 (493)
T 3a74_A 182 QSMRRYLDSHGYLEVETPMMHAVAGGAAARPFITH--------------------------------------------- 216 (493)
T ss_dssp HHHHHHHHHTTCEECCCCSEESSCCSSSSCCCEEE---------------------------------------------
T ss_pred HHHHHHHHhCCeEEEECCeEEecCCCCcccceEec---------------------------------------------
Confidence 99999999999999999999977655557899763
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccccccccCccccccccHHHHHHHH-HccccceEEEeceee
Q 018229 254 AGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETY-ACAVSNVYTFGPTFR 332 (359)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~L~~S~ql~~e~~-~~~~~~Vy~~~p~fR 332 (359)
.++|++++||+||||||+|++ ++|++|||+||||||
T Consensus 217 -------------------------------------------~~~~~~~~yLr~SpqLylk~l~v~G~~rVyeig~~FR 253 (493)
T 3a74_A 217 -------------------------------------------HNALDMTLYMRIAIELHLKRLIVGGLEKVYEIGRVFR 253 (493)
T ss_dssp -------------------------------------------ETTTTEEEEECSCSHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred -------------------------------------------ccCCCceeEEecCHHHHHHHHhhcccCceEEECcccc
Confidence 257899999999999999985 678999999999999
Q ss_pred cCCCCCCCccccccccceeecccCCC
Q 018229 333 AEHSHTSRHLAEFWMVEPEMAFSDLK 358 (359)
Q Consensus 333 aE~~~t~rHl~EF~mle~E~af~~l~ 358 (359)
||++++ ||++||||||+||+|+|++
T Consensus 254 ~E~~~~-rH~pEFT~lE~e~af~d~~ 278 (493)
T 3a74_A 254 NEGIST-RHNPEFTMLELYEAYADFR 278 (493)
T ss_dssp CCCCBT-TBCSEEEEEEEEEETCCHH
T ss_pred CCCCCc-ccCCceeEEEEEecCCCHH
Confidence 999986 9999999999999999863
No 15
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=100.00 E-value=2.2e-51 Score=429.04 Aligned_cols=230 Identities=22% Similarity=0.298 Sum_probs=195.0
Q ss_pred cccccceeehhhhcCCCCCCCCCCCEEEEEEEEeecccCCCceeEEEEEecCCCCceEEEEEeCChh-----hhccCCCC
Q 018229 24 HQFSDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA-----DLGQLVPT 98 (359)
Q Consensus 24 ~~~~~r~~i~di~~~~~l~~~~~gk~V~I~GwV~siR~~Gk~kl~Fi~LRDgsg~~~lQVVv~~~~~-----~~~~~L~~ 98 (359)
+++.+++++.+| ...+.|++|+|+|||+++|.+ +|++|||++|. ||||++++.. ++.+.|+.
T Consensus 7 ~~~~rt~~~~~l------~~~~~g~~V~l~GwV~~~R~~-----~Fi~LrD~~g~--iQvv~~~~~~~~~~~~~~~~l~~ 73 (617)
T 4ah6_A 7 SFVVRTNTCGEL------RSSHLGQEVTLCGWIQYRRQN-----TFLVLRDFDGL--VQVIIPQDESAASVKKILCEAPV 73 (617)
T ss_dssp CSSSCSSCGGGC------CGGGTTCEEEEEEEECCCCTT-----TEEEEECSSCE--EEEECCCSSSSHHHHHHHHHCCS
T ss_pred ccccCceEHHHh------HHHhCCCEEEEEEEeeeecCe-----EEEEEEeCCcC--EEEEEeCCcCcHHHHHHHhcCCC
Confidence 456666666665 457789999999999999963 39999999986 9999987532 24567999
Q ss_pred CcEEEEEeEEeCCCCC------CcccEEEEEeEEEEeecCCCCCCCCCCcCc---chhhhccCcCccCCchHHHHHHHHH
Q 018229 99 GTCVYVEGMLKNPPEG------TKQKIELRVQKVVDVGMVDPAKYPIPKTKL---TLEFLRDRIPFRPRTNTIAAVARIR 169 (359)
Q Consensus 99 esvV~V~G~v~~s~~~------~~g~lEL~a~~i~vLs~a~~~~~Pi~~k~~---~~e~lr~~r~L~lR~~~~~ai~riR 169 (359)
||+|.|+|+|.+++.+ .+|++||++++|+||++|. ++|++.+++ +.+.++++||||+|++.++++|++|
T Consensus 74 e~~V~V~G~v~~~~~~~~n~~~~tgeiEl~~~~i~vL~~a~--~lP~~~~~~~~~~ee~Rl~~R~LdLR~~~~~~~lr~R 151 (617)
T 4ah6_A 74 ESVVQVSGTVISRPAGQENPKMPTGEIEIKVKTAELLNACK--KLPFEIKNFVKKTEALRLQYRYLDLRSFQMQYNLRLR 151 (617)
T ss_dssp SCEEEEEEEEEECSTTCCCTTSTTTTEEEEEEEEEEEECBC--CCSSCTTTTCCSCHHHHHHTHHHHTTSHHHHHHHHHH
T ss_pred CCEEEEEEEEEeCCccccCccCCCCcEEEEEeEEEEeecCC--CCCcccccccccChhhhccceeeeecchHHHHHHHHH
Confidence 9999999999986532 3589999999999999996 678765543 4567779999999999999999999
Q ss_pred HHHHHHHHHHHH-hCCcEEEccCeeecCCCCCCCCcceeeccccchhhhhhhhcCCCCCChhhHHHHHHHHHHhhhHHHh
Q 018229 170 NALAYATHTFLQ-KQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAK 248 (359)
Q Consensus 170 S~I~~~iR~fL~-~~gF~EV~TPiLt~~~~EGa~e~F~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (359)
|.|++++|+||. ++||+||+||+|++++||||++ |.|++
T Consensus 152 s~i~~~iR~f~~~~~gF~EVeTPiL~~st~~GA~~-F~v~~--------------------------------------- 191 (617)
T 4ah6_A 152 SQMVMKMREYLCNLHGFVDIETPTLFKRTPGGAKE-FLVPS--------------------------------------- 191 (617)
T ss_dssp HHHHHHHHHHHHTTSCCEECCCCSSBCCCCSSSCC-CEEEC---------------------------------------
T ss_pred HHHHHHHHHHHHhcCCeEEEeCCeeccCCCCCCcC-ceecc---------------------------------------
Confidence 999999999996 7999999999999999998875 87752
Q ss_pred hhcccchhhhhhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccccccccCccccccccHHHHHHH-HHccccceEEE
Q 018229 249 LKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVET-YACAVSNVYTF 327 (359)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~L~~S~ql~~e~-~~~~~~~Vy~~ 327 (359)
..+++.+||+||||||+|+ +++||+|||+|
T Consensus 192 -------------------------------------------------~~~g~~~~L~qSpql~kq~l~v~g~~rvfqi 222 (617)
T 4ah6_A 192 -------------------------------------------------REPGKFYSLPQSPQQFKQLLMVGGLDRYFQV 222 (617)
T ss_dssp -------------------------------------------------SSTTCEEECCSSTTHHHHHHHHTSCSEEEEE
T ss_pred -------------------------------------------------ccCCcccccccCHHHHHHHHHhcccCcEEEE
Confidence 1245667999999999997 57889999999
Q ss_pred eceeecCCCCCCCccccccccceeecccCCC
Q 018229 328 GPTFRAEHSHTSRHLAEFWMVEPEMAFSDLK 358 (359)
Q Consensus 328 ~p~fRaE~~~t~rHl~EF~mle~E~af~~l~ 358 (359)
|||||||++++. |++||||||+||+|+|++
T Consensus 223 ~~~FR~E~~~t~-r~pEFt~lE~e~af~d~~ 252 (617)
T 4ah6_A 223 ARCYRDEGSRPD-RQPEFTQIDIEMSFVDQT 252 (617)
T ss_dssp EEEECCCSSCSS-SCSEEEEEEEEEESCCHH
T ss_pred EhheecccCCCC-cCcceecceeeecCCCHH
Confidence 999999999975 599999999999999863
No 16
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=99.97 E-value=1.3e-32 Score=270.78 Aligned_cols=111 Identities=19% Similarity=0.250 Sum_probs=99.2
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHhCCcEEEccCeeecCCCCCC-CCcceeeccccchhhhhhhhcCCCCCChhhHHH
Q 018229 156 RPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGA-GEMFQVTTLISDADKLEKELIKNPPPSEADIEA 234 (359)
Q Consensus 156 ~lR~~~~~ai~riRS~I~~~iR~fL~~~gF~EV~TPiLt~~~~EGa-~e~F~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (359)
+.|++ .+++|++||.|+++||+||.++||+||+||+|+++++||| +++|.+
T Consensus 27 ~~~~~-~~~~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~~~a~~~~F~~--------------------------- 78 (345)
T 3a5y_A 27 WQPSA-SIPNLLKRAAIMAEIRRFFADRGVLEVETPCMSQATVTDIHLVPFET--------------------------- 78 (345)
T ss_dssp TSCSS-CHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCCCCTTCCCCEE---------------------------
T ss_pred cCCch-HHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEecCCCCCccceEEE---------------------------
Confidence 44555 7899999999999999999999999999999999888754 688865
Q ss_pred HHHHHHHhhhHHHhhhcccchhhhhhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccccccccC------ccccccc
Q 018229 235 AKLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFA------RQAFLTV 308 (359)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~------~~~~L~~ 308 (359)
+||+ .++||+|
T Consensus 79 ---------------------------------------------------------------~~~~~~~~~~~~~yL~~ 95 (345)
T 3a5y_A 79 ---------------------------------------------------------------RFVGPGHSQGMNLWLMT 95 (345)
T ss_dssp ---------------------------------------------------------------EECCSTTSCCEEEEECS
T ss_pred ---------------------------------------------------------------EecCcccccCCCEeecC
Confidence 3444 7899999
Q ss_pred cHHHHHH-HHHccccceEEEeceeecCCCCCCCccccccccceeecccCCC
Q 018229 309 SGQLQVE-TYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLK 358 (359)
Q Consensus 309 S~ql~~e-~~~~~~~~Vy~~~p~fRaE~~~t~rHl~EF~mle~E~af~~l~ 358 (359)
||||||| ++++|++|||+||||||||++ ++||++||||||+||+|+|++
T Consensus 96 Spql~~k~l~~~g~~rvyqIg~~FR~E~~-~~rH~pEFt~lE~e~af~d~~ 145 (345)
T 3a5y_A 96 SPEYHMKRLLVAGCGPVFQLCRSFRNEEM-GRYHNPEFTMLEWYRPHYDMY 145 (345)
T ss_dssp CSHHHHHHHHHTTCCSEEEEEEEECCCCC-BTTBCSEEEEEEEEEETCCHH
T ss_pred CHHHHHHHHHHcCCCcEEEEEcceeCCCC-cccccchhheeeeeeeCCCHH
Confidence 9999999 568899999999999999999 899999999999999999863
No 17
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=99.96 E-value=1.5e-29 Score=243.67 Aligned_cols=115 Identities=21% Similarity=0.269 Sum_probs=105.2
Q ss_pred cCcCccCCchHHHHHHHHHHHHHHHHHHHHHhCCcEEEccCeeecC--------CCCCCCCcceeeccccchhhhhhhhc
Q 018229 151 DRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTS--------DCEGAGEMFQVTTLISDADKLEKELI 222 (359)
Q Consensus 151 ~~r~L~lR~~~~~ai~riRS~I~~~iR~fL~~~gF~EV~TPiLt~~--------~~EGa~e~F~v~~~~~~~~~~~~~~~ 222 (359)
+||+|++|++ +++++++|+.|++.+|+||.++||+||+||+|+.+ .+|| +++|.+
T Consensus 1 ~~r~l~lr~~-~~~~~~~rs~i~~~ir~~f~~~GF~EVeTP~l~~~~~~~~~~~~~e~-a~~f~~--------------- 63 (294)
T 1nnh_A 1 MNAVEIISRE-ISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEG-MEPAEV--------------- 63 (294)
T ss_dssp -CHHHHHTSC-CHHHHHHHHHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTTCCC-CCCCEE---------------
T ss_pred CchHHhhhcc-hHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEccchhccCCCCCc-ceeEEE---------------
Confidence 4789999999 99999999999999999999999999999999999 7777 777754
Q ss_pred CCCCCChhhHHHHHHHHHHhhhHHHhhhcccchhhhhhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccccccccCc
Q 018229 223 KNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFAR 302 (359)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~ 302 (359)
+||++
T Consensus 64 ---------------------------------------------------------------------------~~~~~ 68 (294)
T 1nnh_A 64 ---------------------------------------------------------------------------EIYGV 68 (294)
T ss_dssp ---------------------------------------------------------------------------EETTE
T ss_pred ---------------------------------------------------------------------------EcCCC
Confidence 47888
Q ss_pred cccccccHHHHHHHHH-ccccceEEEeceeecCC--CCCCCccccccccceeecccCC
Q 018229 303 QAFLTVSGQLQVETYA-CAVSNVYTFGPTFRAEH--SHTSRHLAEFWMVEPEMAFSDL 357 (359)
Q Consensus 303 ~~~L~~S~ql~~e~~~-~~~~~Vy~~~p~fRaE~--~~t~rHl~EF~mle~E~af~~l 357 (359)
++||++|||+|+|+++ ++++|||+||||||+|+ ++|.||++||||||+|++|.|+
T Consensus 69 ~~~L~~Spe~~~~~l~~~g~~rvf~ig~~FR~E~pq~~~~RH~~EFtqle~e~~~~~~ 126 (294)
T 1nnh_A 69 KMRLTHSMILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAKM 126 (294)
T ss_dssp EEEECSCSHHHHHHHHHTTCCEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEETCCH
T ss_pred CEEeccChHHHHHHHhhcCccceEEEEccEeCCCCCCCCCccccceeEEEEEecCCCH
Confidence 9999999999999864 55999999999999999 9889999999999999999874
No 18
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=99.83 E-value=4.3e-22 Score=190.77 Aligned_cols=155 Identities=15% Similarity=0.135 Sum_probs=118.7
Q ss_pred CcccEEEEEeEEEEeecCCCCCCCCCCcCcchhhhccCcCccCCchHHHHHHHH-----HHHHHHHHHHHHHhCCcEEEc
Q 018229 115 TKQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARI-----RNALAYATHTFLQKQGFLYIH 189 (359)
Q Consensus 115 ~~g~lEL~a~~i~vLs~a~~~~~Pi~~k~~~~e~lr~~r~L~lR~~~~~ai~ri-----RS~I~~~iR~fL~~~gF~EV~ 189 (359)
++|++||++++|+||++|. .++|++.++. ..++++||||+|++.+++++++ ++.+.+.+|++|.++||.||.
T Consensus 23 ~~~~~ei~~~~~~vl~~a~-~~~P~~~~~~--~~~l~~r~l~~R~~~~~~i~~~g~~~~~~~i~~~ir~~l~~~Gf~EV~ 99 (290)
T 3qtc_A 23 APALTKSQTDRLEVLLNPK-DEISLNSGKP--FRELESELLSRRKKDLQQIYAEERENYLGKLEREITRFFVDRGFLEIK 99 (290)
T ss_dssp -CCCCHHHHHHHHHHCCTT-CC----CCSC--HHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCEEEC
T ss_pred CCceEEEEhhhhhhhccCC-CCCCCCcchh--hhhhhhHHHHhccchHHHHhccccccHHHHHHHHHHHHHHHCCCEEEE
Confidence 6899999999999999997 6789876554 2378899999999999999999 999999999999999999999
Q ss_pred cCeeecCCCCCCCCcceeeccccchhhhhhhhcCCCCCChhhHHHHHHHHHHhhhHHHhhhcccchhhhhhhhHHHHHHH
Q 018229 190 TPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAISASVTELTKA 269 (359)
Q Consensus 190 TPiLt~~~~EGa~e~F~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (359)
||+|++..+. +.|.++.
T Consensus 100 Tp~l~~~~~~---~~~~~~~------------------------------------------------------------ 116 (290)
T 3qtc_A 100 SPILIPLEYI---ERMGIDN------------------------------------------------------------ 116 (290)
T ss_dssp CCSEEETHHH---HHTTCCT------------------------------------------------------------
T ss_pred CCceeeHHHH---HhcCCCc------------------------------------------------------------
Confidence 9999886431 1111100
Q ss_pred HHHHHHHHhhhccCCCCCCCCCCccccccccCcccccc--ccHHHHHHHHH-----ccccceEEEeceeecCCCCCCCcc
Q 018229 270 KENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLT--VSGQLQVETYA-----CAVSNVYTFGPTFRAEHSHTSRHL 342 (359)
Q Consensus 270 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~L~--~S~ql~~e~~~-----~~~~~Vy~~~p~fRaE~~~t~rHl 342 (359)
+-| ..-...+|+...+|+ +||||+..+.. ....|+|+||+|||+|.. +.+|+
T Consensus 117 ---------------~~p-----~~~~~~~~~~~~~LR~slsp~L~~~l~~n~~~~~~p~rlfeiG~vFR~E~~-~~~~~ 175 (290)
T 3qtc_A 117 ---------------DTE-----LSKQIFRVDKNFCLRPMLTPNLYNYLRKLDRALPDPIKIFEIGPCYRKESD-GKEHL 175 (290)
T ss_dssp ---------------TSS-----GGGGCCEETTTEEECSCSHHHHHHHHHHHTTTSCSSEEEEEEEEEECCCSC-SSSCC
T ss_pred ---------------CCc-----hhhhheeeCCCeeEcccChHHHHHHHHHhhccCCCCeEEEEEcCEEecCCC-CCcCc
Confidence 000 000123567889999 99999976532 335899999999999975 46899
Q ss_pred ccccccceeecccC
Q 018229 343 AEFWMVEPEMAFSD 356 (359)
Q Consensus 343 ~EF~mle~E~af~~ 356 (359)
.||||+|+|+++.+
T Consensus 176 ~Ef~ql~~~~~g~~ 189 (290)
T 3qtc_A 176 EEFTMLVFWQMGSG 189 (290)
T ss_dssp SEEEEEEEEEESTT
T ss_pred chheEEEEEEEcCC
Confidence 99999999998764
No 19
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=98.02 E-value=4.7e-06 Score=79.70 Aligned_cols=51 Identities=20% Similarity=0.330 Sum_probs=35.4
Q ss_pred cccccc--ccHHHHH--HHHHcccc---ceEEEeceeecCCCCCCCccccccccceeec
Q 018229 302 RQAFLT--VSGQLQV--ETYACAVS---NVYTFGPTFRAEHSHTSRHLAEFWMVEPEMA 353 (359)
Q Consensus 302 ~~~~L~--~S~ql~~--e~~~~~~~---~Vy~~~p~fRaE~~~t~rHl~EF~mle~E~a 353 (359)
+..+|. .+|.+.. ...+..-. |+|++|+|||.|..+ ..|+.||+|+|.++.
T Consensus 123 e~~~LRp~l~p~l~~~~r~~~~~~~~PlrlfeiG~vFR~E~~~-~~r~~EF~qle~~i~ 180 (288)
T 3dsq_A 123 GKKCLRPMLAPNLYTLWRELERLWDKPIRIFEIGTCYRKESQG-AQHLNEFTMLNLTEL 180 (288)
T ss_dssp TTEEECSCSHHHHHHHHHHHTTTSCSCEEEEEEEEEECSCCSS-SCCCSEEEEEEEEEE
T ss_pred cchhhhhcChHHHHHHHHHHHhCCCCCEEEEEEeeEEecCCCC-CCcCccEEEEEEEEE
Confidence 455776 3455541 12222333 899999999999886 468899999998764
No 20
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=98.02 E-value=5.3e-06 Score=79.44 Aligned_cols=50 Identities=14% Similarity=0.167 Sum_probs=37.5
Q ss_pred cccc--cccHHHHHHHHHcc----ccceEEEeceeecCCCCCCCccccccccceeecc
Q 018229 303 QAFL--TVSGQLQVETYACA----VSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAF 354 (359)
Q Consensus 303 ~~~L--~~S~ql~~e~~~~~----~~~Vy~~~p~fRaE~~~t~rHl~EF~mle~E~af 354 (359)
..+| +.+|.| ++++... -.|+|++|.|||+|..+ .+|++||+|||..++.
T Consensus 109 ~~vLRtsl~p~l-l~~l~~N~~~~~~riFEiG~Vfr~d~~d-~~h~~Ef~~Le~~~~g 164 (294)
T 2rhq_A 109 EILMRTHTSPVQ-ARTMEKRNGQGPVKIICPGKVYRRDSDD-ATHSHQFTQIEGLVVD 164 (294)
T ss_dssp SEEECSSSHHHH-HHHHHHTTTCSCEEEEEEEEEECCCCCB-TTBCSEEEEEEEEEEE
T ss_pred cceeeccCHHHH-HHHHHhcCCCCCccEEEEcCEEecCCCC-CCCCChhhEEEEEEEC
Confidence 3455 455555 5666554 57999999999987644 4699999999998875
No 21
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*
Probab=97.75 E-value=6e-05 Score=74.12 Aligned_cols=50 Identities=18% Similarity=0.081 Sum_probs=37.7
Q ss_pred ccccccHHHHHHHHHcc-c-cceEEEeceeecCCCCCCCccccccccceeeccc
Q 018229 304 AFLTVSGQLQVETYACA-V-SNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFS 355 (359)
Q Consensus 304 ~~L~~S~ql~~e~~~~~-~-~~Vy~~~p~fRaE~~~t~rHl~EF~mle~E~af~ 355 (359)
+..+.||.+. +++..+ . -|+|++|+|||+|..+ .+|++||+|||..++..
T Consensus 175 LRt~tsp~ll-r~l~~~~~piriFEiGrVFR~d~~d-~tH~pEF~qlegl~~g~ 226 (350)
T 1b7y_A 175 LRTHTSPMQV-RYMVAHTPPFRIVVPGRVFRFEQTD-ATHEAVFHQLEGLVVGE 226 (350)
T ss_dssp ECSSSTHHHH-HHHHHCCSSEEEEEEEEEECCCCCC-SSCCSEEEEEEEEEEET
T ss_pred eeccchHHHH-HHHHhcCCCeeEEEeeeEEECCCCC-CCCCChhHEEEEEEECC
Confidence 3566777765 555433 3 3899999999998755 57999999999988654
No 22
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=97.75 E-value=3.4e-05 Score=77.84 Aligned_cols=33 Identities=9% Similarity=0.138 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEccCeeecC
Q 018229 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (359)
Q Consensus 164 ai~riRS~I~~~iR~fL~~~gF~EV~TPiLt~~ 196 (359)
.-.+++..|.+.+|+.|.+.||.||.||+|...
T Consensus 65 ~g~~~~~~i~~~ir~~~~~~G~~ei~tP~l~~~ 97 (458)
T 2i4l_A 65 LGHRVLKKIEQIVREEQNRAGAIELLMPTLQLA 97 (458)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEH
T ss_pred CHHHHHHHHHHHHHHHHHHcCCEEEEcCccCcH
Confidence 457899999999999999999999999999875
No 23
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=97.74 E-value=3e-05 Score=76.68 Aligned_cols=34 Identities=15% Similarity=0.230 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEccCeeecCC
Q 018229 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTSD 197 (359)
Q Consensus 164 ai~riRS~I~~~iR~fL~~~gF~EV~TPiLt~~~ 197 (359)
.-.+++..|...+|+.|.+.||.||.||+|....
T Consensus 14 ~~~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~ 47 (420)
T 1qe0_A 14 EDSKKWRYIENQLDELMTFYNYKEIRTPIFESTD 47 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEccCcccchHH
Confidence 3467899999999999999999999999998743
No 24
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=97.54 E-value=0.0002 Score=71.42 Aligned_cols=33 Identities=12% Similarity=0.098 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEccCeeecC
Q 018229 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (359)
Q Consensus 164 ai~riRS~I~~~iR~fL~~~gF~EV~TPiLt~~ 196 (359)
.-.+++..|...+|+.|...||.||.||+|...
T Consensus 18 ~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~ 50 (434)
T 1wu7_A 18 EDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYL 50 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEET
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEeeccccccH
Confidence 346789999999999999999999999999874
No 25
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=97.53 E-value=0.00013 Score=73.29 Aligned_cols=34 Identities=24% Similarity=0.286 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEccCeeecCC
Q 018229 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTSD 197 (359)
Q Consensus 164 ai~riRS~I~~~iR~fL~~~gF~EV~TPiLt~~~ 197 (359)
.-.+++..|.+.++++|.+.||.||.||+|....
T Consensus 170 ~ga~l~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~ 203 (425)
T 2dq3_A 170 WGARLERALINFMLDLHTKKGYKEICPPHLVKPE 203 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECCccccHH
Confidence 4567899999999999999999999999998754
No 26
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=97.52 E-value=0.00017 Score=73.44 Aligned_cols=34 Identities=9% Similarity=0.092 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEccCeeecCC
Q 018229 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTSD 197 (359)
Q Consensus 164 ai~riRS~I~~~iR~fL~~~gF~EV~TPiLt~~~ 197 (359)
.-.+++..|...+|+.|.+.||.||.||+|....
T Consensus 42 ~g~~l~~~I~~~~r~~~~~~G~~ei~tP~l~~~e 75 (477)
T 1hc7_A 42 YGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMS 75 (477)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEST
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEecCccccHH
Confidence 4467899999999999999999999999998765
No 27
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=97.48 E-value=0.00019 Score=70.94 Aligned_cols=33 Identities=21% Similarity=0.368 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEEccCeeecCC
Q 018229 165 VARIRNALAYATHTFLQKQGFLYIHTPIITTSD 197 (359)
Q Consensus 165 i~riRS~I~~~iR~fL~~~gF~EV~TPiLt~~~ 197 (359)
-.+++..|...+|+-|...||.||.||+|....
T Consensus 16 ~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~e 48 (421)
T 1h4v_B 16 ELRMHQRIVATARKVLEAAGALELVTPIFEETQ 48 (421)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEecccccccHH
Confidence 457889999999999999999999999997643
No 28
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=97.45 E-value=0.00011 Score=72.49 Aligned_cols=34 Identities=12% Similarity=0.080 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEccCeeecCC
Q 018229 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTSD 197 (359)
Q Consensus 164 ai~riRS~I~~~iR~fL~~~gF~EV~TPiLt~~~ 197 (359)
.-.+++..|...+|+.|.+.||.||.||+|....
T Consensus 28 ~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~ 61 (401)
T 1evl_A 28 DGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRV 61 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHH
T ss_pred hHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHH
Confidence 4468899999999999999999999999997753
No 29
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=97.44 E-value=0.00017 Score=73.16 Aligned_cols=33 Identities=21% Similarity=0.381 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEccCeeecC
Q 018229 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (359)
Q Consensus 164 ai~riRS~I~~~iR~fL~~~gF~EV~TPiLt~~ 196 (359)
.-.+++..|...+|+.|.+.||.||.||+|...
T Consensus 44 ~~~~~~~~l~~~i~~~~~~~Gy~eI~tP~le~~ 76 (467)
T 4e51_A 44 QDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHT 76 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECCccccH
Confidence 346789999999999999999999999999764
No 30
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=97.43 E-value=0.00026 Score=69.06 Aligned_cols=33 Identities=3% Similarity=0.080 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEccCeeecC
Q 018229 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (359)
Q Consensus 164 ai~riRS~I~~~iR~fL~~~gF~EV~TPiLt~~ 196 (359)
.-.+++..|...+|+.|...||.||.||+|...
T Consensus 34 ~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~le~~ 66 (344)
T 1z7m_A 34 NQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYT 66 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEecCcccCcH
Confidence 345788899999999999999999999999764
No 31
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=97.42 E-value=0.00015 Score=71.73 Aligned_cols=33 Identities=18% Similarity=0.285 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEccCeeecC
Q 018229 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (359)
Q Consensus 164 ai~riRS~I~~~iR~fL~~~gF~EV~TPiLt~~ 196 (359)
.-.+++..|...+|+.|...||.||.||+|...
T Consensus 16 ~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~ 48 (423)
T 1htt_A 16 GETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQT 48 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEECBCCSEEEH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEecccccCHH
Confidence 346788999999999999999999999999764
No 32
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=97.39 E-value=0.00025 Score=74.45 Aligned_cols=34 Identities=21% Similarity=0.222 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEccCeeecCC
Q 018229 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTSD 197 (359)
Q Consensus 164 ai~riRS~I~~~iR~fL~~~gF~EV~TPiLt~~~ 197 (359)
.-.+++..|...+|+.|.+.||.||.||+|....
T Consensus 269 ~g~~~~~~l~~~ir~~~~~~Gy~eV~tP~l~~~~ 302 (645)
T 1nyr_A 269 NGATIRREIERYIVDKEVSMGYDHVYTPVLANVD 302 (645)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTEEECBCCSEEETH
T ss_pred CHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHH
Confidence 4578999999999999999999999999998753
No 33
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=97.38 E-value=0.00042 Score=69.15 Aligned_cols=32 Identities=16% Similarity=0.240 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEccCeeec
Q 018229 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITT 195 (359)
Q Consensus 164 ai~riRS~I~~~iR~fL~~~gF~EV~TPiLt~ 195 (359)
.-.+++..|...+|+.|...||.||.||+|..
T Consensus 26 ~~~~~~~~i~~~~~~~~~~~Gy~eI~tP~le~ 57 (464)
T 4g84_A 26 RQMAVREKVFDVIIRCFKRHGAEVIDTPVFEL 57 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCeEEECcccCc
Confidence 44678899999999999999999999999954
No 34
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=97.38 E-value=0.00028 Score=72.80 Aligned_cols=33 Identities=12% Similarity=0.133 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEccCeeecC
Q 018229 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (359)
Q Consensus 164 ai~riRS~I~~~iR~fL~~~gF~EV~TPiLt~~ 196 (359)
.-.+++..|...+|+.|.+.||.||.||+|...
T Consensus 45 ~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~ 77 (572)
T 2j3l_A 45 LANRVLEKLKTIMREEFEKIDAVEMLMPALLPA 77 (572)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEECBCCSEEET
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECCccccH
Confidence 457899999999999999999999999999775
No 35
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=97.34 E-value=0.00028 Score=71.39 Aligned_cols=45 Identities=16% Similarity=0.269 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEccCeeecCC-----CCCCCC-cceee
Q 018229 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTSD-----CEGAGE-MFQVT 208 (359)
Q Consensus 164 ai~riRS~I~~~iR~fL~~~gF~EV~TPiLt~~~-----~EGa~e-~F~v~ 208 (359)
.-.++|..|...+|+.|...||.||.||+|-... ++...+ ||.+.
T Consensus 24 ~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~~E~~~~~~~~G~~~ke~m~~~~ 74 (465)
T 3net_A 24 SEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLE 74 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHGGGCC--CBEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHHhccCCCCccceEEEe
Confidence 3457889999999999999999999999993211 233356 78764
No 36
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=97.30 E-value=0.00043 Score=68.92 Aligned_cols=34 Identities=12% Similarity=0.174 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEccCeeecCC
Q 018229 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTSD 197 (359)
Q Consensus 164 ai~riRS~I~~~iR~fL~~~gF~EV~TPiLt~~~ 197 (359)
.-.+++..|...+|+.|...||.||.||+|-...
T Consensus 22 ~~~~~~~~i~~~l~~~~~~~Gy~eI~tP~lE~~e 55 (400)
T 3od1_A 22 EWYKTKKNICDQMTEEINLWGYDMIETPTLEYYE 55 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHH
Confidence 3457889999999999999999999999996543
No 37
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=97.25 E-value=0.00046 Score=69.78 Aligned_cols=34 Identities=18% Similarity=0.155 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEccCeeecCC
Q 018229 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTSD 197 (359)
Q Consensus 164 ai~riRS~I~~~iR~fL~~~gF~EV~TPiLt~~~ 197 (359)
.-.+++..|...+|+.|.+.||.||.||+|....
T Consensus 36 ~g~~l~~~i~~~~~~~~~~~G~~ei~tP~l~~~~ 69 (459)
T 1nj8_A 36 YGFKIRRYTFEIIRNLLDESGHDEALFPMLIPED 69 (459)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHH
T ss_pred hHHHHHHHHHHHHHHHHHHcCCEEeeCCcccCHH
Confidence 4467899999999999999999999999998643
No 38
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=97.21 E-value=0.0016 Score=53.31 Aligned_cols=82 Identities=16% Similarity=0.170 Sum_probs=61.8
Q ss_pred CCCEEEEEEEEeec---c----cCC--CceeEEEEEecCCCCceEEEEEeCChhhhccCCCCCcEEEEEeEEeCCCCCCc
Q 018229 46 AGRQVRVGGWVKTG---R----EQG--KGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTK 116 (359)
Q Consensus 46 ~gk~V~I~GwV~si---R----~~G--k~kl~Fi~LRDgsg~~~lQVVv~~~~~~~~~~L~~esvV~V~G~v~~s~~~~~ 116 (359)
.|+.|.+.|.|.++ | +.| + ++.++.|.|++|. |.+.+..+.......+..|++|.|.|.+.... -.
T Consensus 15 ~g~~v~i~~~V~~~~~~~~~~~k~G~~~-~~~~~~l~D~TG~--I~~t~w~~~~~~~~~l~~G~vv~i~g~~v~~~--f~ 89 (115)
T 2k50_A 15 EGAETPVTGRVMKISSPRTFTTRKGREG-KLANVIIADDTGE--LRAVFWTENIKLLKKFREGDVIRIKDVNIRGG--FG 89 (115)
T ss_dssp TTCEEEEEEEEEEECCCEECCCTTSSCC-EEEEEEEEETTEE--EEEEEETTGGGGGGTCCTTSEEEEEEEEECCC--SS
T ss_pred CCCEeEEEEEEEECCCceEEEcCCCCEE-EEEEEEEEeCCCe--EEEEEeCchhhhhhcCCCCCEEEEEeeEEccc--cC
Confidence 48899999999988 2 233 3 7999999999984 99998876543345789999999999986542 14
Q ss_pred ccEEEEEeEEEEeecC
Q 018229 117 QKIELRVQKVVDVGMV 132 (359)
Q Consensus 117 g~lEL~a~~i~vLs~a 132 (359)
|.++|.+.+...+.++
T Consensus 90 g~~qL~~~~~~~i~~~ 105 (115)
T 2k50_A 90 GRKEAHLMPRSTVEVL 105 (115)
T ss_dssp SSCEEEECTTCCEEEE
T ss_pred CeEEEEECCCceEEEC
Confidence 6788888765555444
No 39
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=97.17 E-value=0.00064 Score=68.91 Aligned_cols=34 Identities=29% Similarity=0.204 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHH-HhCCcEEEccCeeecCC
Q 018229 164 AVARIRNALAYATHTFL-QKQGFLYIHTPIITTSD 197 (359)
Q Consensus 164 ai~riRS~I~~~iR~fL-~~~gF~EV~TPiLt~~~ 197 (359)
.-.+++..|...+|+.+ .+.||.||.||+|....
T Consensus 62 ~g~~l~~~l~~~~~~~~~~~~Gy~ev~tP~l~~~~ 96 (460)
T 3uh0_A 62 NGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKT 96 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCEECCCCSEEEHH
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCEEEECCeeccHH
Confidence 45788999999999999 99999999999997643
No 40
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=97.13 E-value=0.00054 Score=67.57 Aligned_cols=31 Identities=16% Similarity=0.300 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEccCeeecC
Q 018229 166 ARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (359)
Q Consensus 166 ~riRS~I~~~iR~fL~~~gF~EV~TPiLt~~ 196 (359)
.+++..|...+|+.|...||.||.||+|...
T Consensus 37 ~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~ 67 (373)
T 3rac_A 37 AKRRRAVETRLLSFVEDAGYEPVTSGLFEYV 67 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSEEEH
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEECCceeeH
Confidence 5778899999999999999999999999654
No 41
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=97.08 E-value=0.00059 Score=71.85 Aligned_cols=34 Identities=12% Similarity=0.080 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEccCeeecCC
Q 018229 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTSD 197 (359)
Q Consensus 164 ai~riRS~I~~~iR~fL~~~gF~EV~TPiLt~~~ 197 (359)
.-.+++..|...+|+.+.+.||.||.||+|....
T Consensus 269 ~g~~l~~~l~~~~r~~~~~~Gy~ev~tP~l~~~~ 302 (642)
T 1qf6_A 269 DGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRV 302 (642)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETH
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEECCcCccHH
Confidence 5578999999999999999999999999998753
No 42
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=97.04 E-value=0.00051 Score=70.28 Aligned_cols=33 Identities=15% Similarity=0.155 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEccCeeecCC
Q 018229 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTSD 197 (359)
Q Consensus 164 ai~riRS~I~~~iR~fL~~~gF~EV~TPiLt~~~ 197 (359)
.-.+++..|...+|+.|.+ ||.||.||+|....
T Consensus 69 ~g~~l~~~i~~~~~~~~~~-G~~ei~tP~l~~~~ 101 (501)
T 1nj1_A 69 HGFMIRKNTLKILRRILDR-DHEEVLFPLLVPED 101 (501)
T ss_dssp HHHHHHHHHHHHHHHHHTT-TCEECCCCSEEEHH
T ss_pred cHHHHHHHHHHHHHHHHHc-CCEEEecCcEecHH
Confidence 4467888999999999999 99999999998754
No 43
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=97.04 E-value=0.001 Score=67.86 Aligned_cols=33 Identities=15% Similarity=0.236 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEEccCeeec
Q 018229 163 AAVARIRNALAYATHTFLQKQGFLYIHTPIITT 195 (359)
Q Consensus 163 ~ai~riRS~I~~~iR~fL~~~gF~EV~TPiLt~ 195 (359)
-.-.++|..|...+|+.|...||.||.||+|-.
T Consensus 78 P~~~~~~~~ie~~i~~~~~~~Gy~eI~tP~lE~ 110 (517)
T 4g85_A 78 PRQMAVREKVFDVIIRCFKRHGAEVIDTPVFEL 110 (517)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCEECBCCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCeEEECcccCc
Confidence 345688999999999999999999999999954
No 44
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=97.02 E-value=0.00084 Score=68.08 Aligned_cols=34 Identities=18% Similarity=0.167 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEccCeeecCC
Q 018229 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTSD 197 (359)
Q Consensus 164 ai~riRS~I~~~iR~fL~~~gF~EV~TPiLt~~~ 197 (359)
.-.+++..|.+.+++.+.+.||.||.||+|....
T Consensus 191 ~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~ 224 (455)
T 2dq0_A 191 EIVILDLALIRFALDRLIEKGFTPVIPPYMVRRF 224 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEeCCcccCHH
Confidence 4567889999999999999999999999998754
No 45
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=97.02 E-value=0.0062 Score=51.24 Aligned_cols=95 Identities=21% Similarity=0.259 Sum_probs=65.8
Q ss_pred ceeehhhhcCCCCCCC--CCC---CEEEEEEEEeecccCCCceeEEEEEecCCC-CceEEEEEeCChhh---hccCCCCC
Q 018229 29 RVLIKSILTRPDGGAG--LAG---RQVRVGGWVKTGREQGKGSFAFLEVNDGSC-PANLQVIVDKDVAD---LGQLVPTG 99 (359)
Q Consensus 29 r~~i~di~~~~~l~~~--~~g---k~V~I~GwV~siR~~Gk~kl~Fi~LRDgsg-~~~lQVVv~~~~~~---~~~~L~~e 99 (359)
.++|++|+++...+.. ..| ..|+|-|+|.+++... .-.-+.|.|+|| . |.+....+... -...+..|
T Consensus 8 PvtIkqil~a~~~~~~f~i~g~~i~~V~iVG~V~~~~~~~--~~~~~~ldD~TG~~--I~~~~W~~~~~~~~~~~~~~~g 83 (132)
T 3kdf_D 8 PCTISQLLSATLVDEVFRIGNVEISQVTIVGIIRHAEKAP--TNIVYKIDDMTAAP--MDVRQWVDTDDTSSENTVVPPE 83 (132)
T ss_dssp ECCHHHHHTCEESSSCEEETTEECCEEEEEEEEEEEEECS--SEEEEEEECSSSSC--EEEEEEC---------CCCCTT
T ss_pred eEEHHHHhhCccCCCcEEECCEEEEEEEEEEEEEEEEEcC--CeEEEEEECCCCCE--EEEEEEccCCCcccccccccCC
Confidence 4678888765321111 122 3599999999999888 455668999999 6 99988765421 13568899
Q ss_pred cEEEEEeEEeCCCCCCcccEEEEEeEEEEeec
Q 018229 100 TCVYVEGMLKNPPEGTKQKIELRVQKVVDVGM 131 (359)
Q Consensus 100 svV~V~G~v~~s~~~~~g~lEL~a~~i~vLs~ 131 (359)
++|.|.|.++.- .|...|.+..|..+..
T Consensus 84 ~yVrV~G~l~~f----~g~~qi~~~~ir~v~d 111 (132)
T 3kdf_D 84 TYVKVAGHLRSF----QNKKSLVAFKIMPLED 111 (132)
T ss_dssp CEEEEEEEEEEE----TTEEEEEEEEEEECSS
T ss_pred CEEEEEEEEEeE----CCEEEEEEEEEEEcCC
Confidence 999999999754 3567888888876643
No 46
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=97.01 E-value=0.00072 Score=68.37 Aligned_cols=33 Identities=33% Similarity=0.560 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEEccCeeecCC
Q 018229 165 VARIRNALAYATHTFLQKQGFLYIHTPIITTSD 197 (359)
Q Consensus 165 i~riRS~I~~~iR~fL~~~gF~EV~TPiLt~~~ 197 (359)
-.+++..|...+|+.|.+.||.||.||+|....
T Consensus 48 g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~ 80 (471)
T 3a32_A 48 GGPIRYALAEVLAKFHARRGYYVVETPIIASTE 80 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEEETH
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCeeeehH
Confidence 367899999999999999999999999998754
No 47
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=97.00 E-value=0.0066 Score=53.33 Aligned_cols=77 Identities=19% Similarity=0.187 Sum_probs=62.6
Q ss_pred CEEEEEEEEeecccCCCceeEEEEEecCCCCceEEEEEeCCh-h---hhccCCCCCcEEEEEeEEeCCCCCCcccEEEEE
Q 018229 48 RQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDV-A---DLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRV 123 (359)
Q Consensus 48 k~V~I~GwV~siR~~Gk~kl~Fi~LRDgsg~~~lQVVv~~~~-~---~~~~~L~~esvV~V~G~v~~s~~~~~g~lEL~a 123 (359)
+.|+|.|.|.+++... +..++.|-|+||. .|.|++..+. . .....+..|++|.|.|.+..- .+..+|.+
T Consensus 48 ~~V~IvGiVv~~~~~~--~~~~ytIDD~TG~-~I~cv~w~~~~~~~~~~~~~l~~G~~VrV~G~v~~f----r~~rqI~~ 120 (159)
T 3kf6_A 48 RWIQIVGYIAAIDIYE--GKHVLTVDDCSGM-VLRVVFIIQDDFSMSKRAISMSPGNVVCVFGKINSF----RSEVELIA 120 (159)
T ss_dssp CEEEEEEEEEEEEEET--TEEEEEEECSSSC-EEEEEEEGGGCHHHHHHHTTCCTTCEEEEEEEEECS----SSSCEEEE
T ss_pred EEEEEEEEEEEEEEeC--CEEEEEEecCCCC-eEEEEEEccCCCCcccccccCCCCCEEEEEEEEEee----CCEEEEEE
Confidence 4699999999999888 6788899999994 6999987654 1 123458999999999999754 46789999
Q ss_pred eEEEEeec
Q 018229 124 QKVVDVGM 131 (359)
Q Consensus 124 ~~i~vLs~ 131 (359)
+++.++..
T Consensus 121 ~~i~~v~d 128 (159)
T 3kf6_A 121 QSFEELRD 128 (159)
T ss_dssp EEEEEECS
T ss_pred EEEEECCC
Confidence 99999864
No 48
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=97.00 E-value=0.008 Score=49.04 Aligned_cols=80 Identities=20% Similarity=0.237 Sum_probs=62.3
Q ss_pred CCEEEEEEEEeecc-------cCCC-ceeEEEEEecCCCCceEEEEEeCChhhhccCCCCCcEEEEEeEEeCCCCCCccc
Q 018229 47 GRQVRVGGWVKTGR-------EQGK-GSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTKQK 118 (359)
Q Consensus 47 gk~V~I~GwV~siR-------~~Gk-~kl~Fi~LRDgsg~~~lQVVv~~~~~~~~~~L~~esvV~V~G~v~~s~~~~~g~ 118 (359)
|..|.|.|+|.++. ..|. +++.=+.|.|.+|. |.+++..+.... .+..|++|.|.|.++... .|+
T Consensus 14 ~~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~D~TG~--IrvtlW~~~a~~--~l~~Gdvv~i~g~vk~~~---~g~ 86 (105)
T 3dm3_A 14 GMTATFEGEVISALPIKEFKRADGSIGKLKSFIVRDETGS--IRVTLWDNLTDI--DVGRGDYVRVRGYIREGY---YGG 86 (105)
T ss_dssp SEEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEETTEE--EEEEEEGGGGGS--CCCTTCEEEEEEEEEECT---TSS
T ss_pred CCeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCCc--EEEEEECccccc--ccCCCCEEEEEEEEEEcc---CCC
Confidence 47899999997763 2231 14555889999984 999987765332 689999999999998764 579
Q ss_pred EEEEEeEEEEeecCC
Q 018229 119 IELRVQKVVDVGMVD 133 (359)
Q Consensus 119 lEL~a~~i~vLs~a~ 133 (359)
+||++.+...|.+|.
T Consensus 87 ~eL~~g~~~~i~~~~ 101 (105)
T 3dm3_A 87 LECTANYVEILKKGE 101 (105)
T ss_dssp EEEEEEEEEEEECCC
T ss_pred EEEEeCCceEEEecc
Confidence 999999999998886
No 49
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=96.94 E-value=0.0016 Score=65.89 Aligned_cols=33 Identities=21% Similarity=0.329 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEEccCeeecCC
Q 018229 165 VARIRNALAYATHTFLQKQGFLYIHTPIITTSD 197 (359)
Q Consensus 165 i~riRS~I~~~iR~fL~~~gF~EV~TPiLt~~~ 197 (359)
-.+++..|...+|+.|...||.||.||+|-...
T Consensus 42 ~~~~~~~i~~~i~~~~~~~Gy~eI~tP~lE~~e 74 (456)
T 3lc0_A 42 AMRCRRHLFDVFHATAKTFGFEEYDAPVLESEE 74 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEEEGG
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCcEeehh
Confidence 357889999999999999999999999997654
No 50
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=96.92 E-value=0.0022 Score=66.25 Aligned_cols=35 Identities=23% Similarity=0.332 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEEccCeeecCC
Q 018229 163 AAVARIRNALAYATHTFLQKQGFLYIHTPIITTSD 197 (359)
Q Consensus 163 ~ai~riRS~I~~~iR~fL~~~gF~EV~TPiLt~~~ 197 (359)
-.-.+++.++++.+++.+.++||.||.||.|....
T Consensus 272 p~Ga~l~~aL~~~~~~~~~~~Gy~ev~~P~lv~~~ 306 (536)
T 3err_A 272 GDLALYELALLRFAMDFMARRGFLPMTLPSYAREK 306 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHH
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCEEEeccccccHH
Confidence 35678999999999999999999999999998653
No 51
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=96.88 E-value=0.0011 Score=67.72 Aligned_cols=35 Identities=23% Similarity=0.403 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEEccCeeecCC
Q 018229 163 AAVARIRNALAYATHTFLQKQGFLYIHTPIITTSD 197 (359)
Q Consensus 163 ~ai~riRS~I~~~iR~fL~~~gF~EV~TPiLt~~~ 197 (359)
-...+++.++++.+++.+.++||.||.||.|....
T Consensus 205 p~GarL~~aL~~f~~d~~~~~Gy~eV~~P~lv~~~ 239 (484)
T 3lss_A 205 GGLVQLQVALVSYSLDFLVKRGYTPFYPPFFLNRD 239 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHH
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCEEEecCccccHH
Confidence 35679999999999999999999999999998754
No 52
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=96.88 E-value=0.0024 Score=65.79 Aligned_cols=34 Identities=15% Similarity=0.079 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEccCeeecCC
Q 018229 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTSD 197 (359)
Q Consensus 164 ai~riRS~I~~~iR~fL~~~gF~EV~TPiLt~~~ 197 (359)
.-++++..|...+|+.+.+.||.||.||+|....
T Consensus 59 ~G~~i~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~ 92 (519)
T 4hvc_A 59 WAYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQS 92 (519)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHH
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEeccccccHH
Confidence 4568899999999999999999999999997654
No 53
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=96.84 E-value=0.0018 Score=64.96 Aligned_cols=34 Identities=24% Similarity=0.337 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEccCeeecCC
Q 018229 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTSD 197 (359)
Q Consensus 164 ai~riRS~I~~~iR~fL~~~gF~EV~TPiLt~~~ 197 (359)
.-.+++..|.+.+++.+.+.||.||.||+|....
T Consensus 164 ~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~ 197 (421)
T 1ses_A 164 DLALYELALLRFAMDFMARRGFLPMTLPSYAREK 197 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEeCCceecHH
Confidence 4568899999999999999999999999997653
No 54
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=96.83 E-value=0.0079 Score=50.88 Aligned_cols=95 Identities=21% Similarity=0.163 Sum_probs=66.5
Q ss_pred ceeehhhhcCCCCC--C--CCCC---CEEEEEEEEeecccCCCceeEEEEEecCCCCceEEEEEeCChhh----hccCCC
Q 018229 29 RVLIKSILTRPDGG--A--GLAG---RQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD----LGQLVP 97 (359)
Q Consensus 29 r~~i~di~~~~~l~--~--~~~g---k~V~I~GwV~siR~~Gk~kl~Fi~LRDgsg~~~lQVVv~~~~~~----~~~~L~ 97 (359)
.++|++|+.+.... . ...| ..|+|.|+|.+++... .-+-+.|.|++|. |.+....+... -...+.
T Consensus 11 PvtIkqil~a~~~~~~~~f~i~g~~i~~V~iVG~V~~~~~~~--~~~~~~ldD~TG~--I~~~~W~~~~~~~~~~~~~~~ 86 (136)
T 4gop_B 11 PVTIRQILNAEQPHPDAEFILDGAELGQLTFVAVVRNISRNA--TNVAYSVEDGTGQ--IEVRQWLDSSSDDSSKASEIR 86 (136)
T ss_dssp ECCHHHHHHCBCCSSSCCCBSSSSBCCEEEEEEEEEEEEECS--SEEEEEEECSSCE--EEEEEECC--------CCSCC
T ss_pred eEEHHHHhhccccCCCCcEEECCEEEEEEEEEEEEEEEEecC--CeEEEEEECCCCC--EEEEEecccCCcccccccccC
Confidence 46788887653211 0 1112 3699999999999887 4555689999985 99988764321 245689
Q ss_pred CCcEEEEEeEEeCCCCCCcccEEEEEeEEEEeec
Q 018229 98 TGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGM 131 (359)
Q Consensus 98 ~esvV~V~G~v~~s~~~~~g~lEL~a~~i~vLs~ 131 (359)
.|++|.|.|.++.- .|...|.+..|+.+..
T Consensus 87 ~g~yVrV~G~v~~f----~g~~qi~~~~ir~v~d 116 (136)
T 4gop_B 87 NNVYVRVLGTLKSF----QNRRSISSGHMRPVID 116 (136)
T ss_dssp TTCEEEEEEEEEEE----TTEEEEEESEEEECSS
T ss_pred CCCEEEEEEEEEEe----CCEEEEEEEEEEECCC
Confidence 99999999999753 4567888888876643
No 55
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=96.81 E-value=0.0011 Score=67.92 Aligned_cols=34 Identities=18% Similarity=0.387 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEccCeeecCC
Q 018229 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTSD 197 (359)
Q Consensus 164 ai~riRS~I~~~iR~fL~~~gF~EV~TPiLt~~~ 197 (359)
...+++.++++.+++.+.++||.||.||.|....
T Consensus 183 ~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~ 216 (485)
T 3qne_A 183 YGVFLNQALINYGLSFLSSKGYVPLQAPVMMNKE 216 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHH
Confidence 5578999999999999999999999999998764
No 56
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=96.76 E-value=0.0059 Score=62.64 Aligned_cols=34 Identities=24% Similarity=0.215 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEccCeeecCC
Q 018229 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTSD 197 (359)
Q Consensus 164 ai~riRS~I~~~iR~fL~~~gF~EV~TPiLt~~~ 197 (359)
...+++.+|++.+++.+.++||.||.||.|....
T Consensus 217 ~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~ 250 (501)
T 1wle_A 217 AGALLQHGLVNFTLNKLIHRGFTPMTVPDLLRGV 250 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHH
T ss_pred hHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHH
Confidence 4578899999999999999999999999998754
No 57
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=96.71 E-value=0.022 Score=45.50 Aligned_cols=78 Identities=21% Similarity=0.246 Sum_probs=57.8
Q ss_pred CCEEEEEEEEeecc---c----CCC-ceeEEEEEecCCCCceEEEEEeCChhhhccCCCCCcEEEEEeEEeCCCCCCccc
Q 018229 47 GRQVRVGGWVKTGR---E----QGK-GSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTKQK 118 (359)
Q Consensus 47 gk~V~I~GwV~siR---~----~Gk-~kl~Fi~LRDgsg~~~lQVVv~~~~~~~~~~L~~esvV~V~G~v~~s~~~~~g~ 118 (359)
|..|.|.|+|.++- . .|. +++.=+.|.|.+|. |.+.+..+..+. .+..||+|.|.|.++.. .+.
T Consensus 11 g~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~DeTG~--I~~tlW~~~~~~--~i~~Gdvv~i~g~v~~~----~~~ 82 (97)
T 3e0e_A 11 NLSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKDDTGS--IRGTLWNELADF--EVKKGDIAEVSGYVKQG----YSG 82 (97)
T ss_dssp TEEEEEEEEEEEECCCEEEC----CCEEEEEEEEEETTEE--EEEEEEGGGGGC--CCCTTCEEEEEEEEEEC------C
T ss_pred CCcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCCc--EEEEEECCcccc--ccCCCCEEEEEEEEEEc----CCe
Confidence 57899999997762 2 221 14666889999985 999987764322 58999999999998755 468
Q ss_pred EEEEEeEEEEeecC
Q 018229 119 IELRVQKVVDVGMV 132 (359)
Q Consensus 119 lEL~a~~i~vLs~a 132 (359)
+||.+.+...+-++
T Consensus 83 ~el~~g~~~~i~k~ 96 (97)
T 3e0e_A 83 LEISVDNIGIIEKS 96 (97)
T ss_dssp EEEEEEEEEEEECC
T ss_pred EEEEECCCcEEEEC
Confidence 99999988877665
No 58
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=96.63 E-value=0.0039 Score=64.27 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEccCeeecCC
Q 018229 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTSD 197 (359)
Q Consensus 164 ai~riRS~I~~~iR~fL~~~gF~EV~TPiLt~~~ 197 (359)
...+++..+++.+++.+.++||.||.||.|....
T Consensus 199 ~GarL~raL~~f~~d~~~~~Gy~EV~~P~lv~~e 232 (522)
T 3vbb_A 199 VLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKE 232 (522)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECCcccchH
Confidence 4578999999999999999999999999997653
No 59
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=96.36 E-value=0.0025 Score=65.65 Aligned_cols=34 Identities=18% Similarity=0.086 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEccCeeecCC
Q 018229 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTSD 197 (359)
Q Consensus 164 ai~riRS~I~~~iR~fL~~~gF~EV~TPiLt~~~ 197 (359)
.-++++..|...+|+.|.+.||.||.||+|....
T Consensus 53 ~G~~i~~~L~~~~~~~~~~~Gy~eV~tP~l~~~e 86 (518)
T 3ial_A 53 YGFFMENAIMRLCEEEYAKVGISQILFPTVIPES 86 (518)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHH
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEEcccccCHH
Confidence 5578899999999999999999999999998654
No 60
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=96.26 E-value=0.0046 Score=60.18 Aligned_cols=43 Identities=19% Similarity=0.291 Sum_probs=31.6
Q ss_pred cccHHHHHHHHHcccc--ceEEEeceeecCCCCCCCccccccccceee
Q 018229 307 TVSGQLQVETYACAVS--NVYTFGPTFRAEHSHTSRHLAEFWMVEPEM 352 (359)
Q Consensus 307 ~~S~ql~~e~~~~~~~--~Vy~~~p~fRaE~~~t~rHl~EF~mle~E~ 352 (359)
+.||.+ ++.+...-. |+|++|.|||.+ . ...|+++|.|+|.-+
T Consensus 169 htsp~~-lr~l~~~~~pirifeiGrVyR~d-~-d~th~p~fhqlegl~ 213 (327)
T 3pco_A 169 QTSGVQ-IRTMKAQQPPIRIIAPGRVYRND-Y-DQTHTPMFHQMEGLI 213 (327)
T ss_dssp CTHHHH-HHHHTTCCSSCCBCCEECCBCSC-C-BTTBCSBCCEEEEEE
T ss_pred cCCHHH-HHHHHhCCCCeeEEeeccEEecC-C-CcccCCcccEEEEEE
Confidence 445655 566654433 899999999998 3 468999999997544
No 61
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=96.14 E-value=0.0061 Score=62.35 Aligned_cols=34 Identities=12% Similarity=0.039 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHH--hCCcEEEccCeeecCC
Q 018229 164 AVARIRNALAYATHTFLQ--KQGFLYIHTPIITTSD 197 (359)
Q Consensus 164 ai~riRS~I~~~iR~fL~--~~gF~EV~TPiLt~~~ 197 (359)
.-.+++..|...+|+.|. +.||.||.||+|....
T Consensus 37 ~G~~l~~~l~~~~r~~~~~~~~g~~ev~tP~l~~~~ 72 (505)
T 1ati_A 37 LGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRL 72 (505)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEETT
T ss_pred cHHHHHHHHHHHHHHHHHHhhCCcEEEEccccCCHH
Confidence 346789999999999999 8999999999998865
No 62
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=96.12 E-value=0.04 Score=51.81 Aligned_cols=98 Identities=20% Similarity=0.243 Sum_probs=67.9
Q ss_pred cccceeehhhhcCCCCCC--CCCC---CEEEEEEEEeecccCCCceeEEEEEecCCC-CceEEEEEeCChhh---hccCC
Q 018229 26 FSDRVLIKSILTRPDGGA--GLAG---RQVRVGGWVKTGREQGKGSFAFLEVNDGSC-PANLQVIVDKDVAD---LGQLV 96 (359)
Q Consensus 26 ~~~r~~i~di~~~~~l~~--~~~g---k~V~I~GwV~siR~~Gk~kl~Fi~LRDgsg-~~~lQVVv~~~~~~---~~~~L 96 (359)
-...++|++|+.+..... ...| ..|+|.|+|.++...+ ..+-+.|.|++| . |.+.+...... -...+
T Consensus 45 ~l~PvtIkqil~a~~~d~~f~i~g~~i~~V~ivG~V~~i~~~~--~~~~~~L~D~TG~~--I~~k~W~~~~~~~~~~~~~ 120 (270)
T 2pi2_A 45 HIVPCTISQLLSATLVDEVFRIGNVEISQVTIVGIIRHAEKAP--TNIVYKIDDMTAAP--MDVRQWVDTDDTSSENTVV 120 (270)
T ss_dssp CCEECCHHHHHHCEEETTEEEETTEEESEEEEEEEEEEEEECS--SEEEEEEECSSSSC--EEEEEECC-------CCCC
T ss_pred ceEEEEHHHHhcCccCCCcEEECCEEEEEEEEEEEEEEEEecc--ceEEEEEECCCCCE--EEEEEEcCcCcccchhhcC
Confidence 345678999986421000 0122 3599999999998777 456668999998 5 99988765321 13568
Q ss_pred CCCcEEEEEeEEeCCCCCCcccEEEEEeEEEEeec
Q 018229 97 PTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGM 131 (359)
Q Consensus 97 ~~esvV~V~G~v~~s~~~~~g~lEL~a~~i~vLs~ 131 (359)
..|++|.|.|.++.= .+...|.+..|+.+..
T Consensus 121 ~~G~yVrV~G~v~~f----~g~~qi~i~~ir~v~d 151 (270)
T 2pi2_A 121 PPETYVKVAGHLRSF----QNKKSLVAFKIMPLED 151 (270)
T ss_dssp CTTCEEEEEEEEEEE----TTEEEEEEEEEEECSC
T ss_pred CCCCEEEEEEEEEec----CCeeEEEEEEEEecCC
Confidence 999999999999754 3567788888877654
No 63
>12as_A Asparagine synthetase; ligase, nitrogen fixation; HET: AMP; 2.20A {Escherichia coli K12} SCOP: d.104.1.1 PDB: 11as_A*
Probab=96.01 E-value=0.017 Score=55.99 Aligned_cols=56 Identities=14% Similarity=0.010 Sum_probs=47.0
Q ss_pred CccccccccHHHHHHH-HHc-cc---cceEEEeceeecCCC-CCCCccccccccceeecccC
Q 018229 301 ARQAFLTVSGQLQVET-YAC-AV---SNVYTFGPTFRAEHS-HTSRHLAEFWMVEPEMAFSD 356 (359)
Q Consensus 301 ~~~~~L~~S~ql~~e~-~~~-~~---~~Vy~~~p~fRaE~~-~t~rHl~EF~mle~E~af~~ 356 (359)
+..+-+.+|--.|+++ +.. +| +..|+..++.|.|.. -+.+|.-+|.+.|+|.....
T Consensus 64 ~~~~eivhSLaKWKR~aL~~y~f~~geGlytdMnaIR~dee~ld~~HS~yvDQwDWE~vi~~ 125 (330)
T 12as_A 64 DAQFEVVHSLAKWKRQTLGQHDFSAGEGLYTHMKALRPDEDRLSPLHSVYVDQWDWERVMGD 125 (330)
T ss_dssp TCCEEECSCCTTHHHHHHHHTTCCTTCEEEEEEEEECTTCSCCCSSCCSEEEEEEEEEECCT
T ss_pred CceEEEeeeHHHHHHHHHHhCCCCCCCeeEecCcccccCcccCCCceeEEEeeeeeEEeccc
Confidence 5677899999999996 433 47 899999999998554 67899999999999998764
No 64
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=95.69 E-value=0.011 Score=55.67 Aligned_cols=28 Identities=14% Similarity=0.081 Sum_probs=24.5
Q ss_pred cceEEEeceeecCCCCCCCccccccccceeec
Q 018229 322 SNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMA 353 (359)
Q Consensus 322 ~~Vy~~~p~fRaE~~~t~rHl~EF~mle~E~a 353 (359)
-|.|++||+||.|.+.. -||||+++|.-
T Consensus 71 ~R~~y~g~vfR~e~~~~----Ref~Q~g~ei~ 98 (275)
T 1usy_A 71 IKVWYADFVYRYSGSDL----VAEYQLGLEKV 98 (275)
T ss_dssp EEEECCEEEEEEETTEE----EEEEEEEEEEE
T ss_pred eEEEEeceEEecCCCCC----CeeeEeCEEEe
Confidence 48999999999999864 79999999863
No 65
>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1
Probab=95.64 E-value=0.04 Score=45.50 Aligned_cols=82 Identities=16% Similarity=0.168 Sum_probs=60.1
Q ss_pred eeehhhhcCCCCCCCCCCCEEEEEEEEeecccCCCceeEEEEEecCCCCceEEEEEeCChhhhc-cCCCCCcEEEEEeEE
Q 018229 30 VLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLG-QLVPTGTCVYVEGML 108 (359)
Q Consensus 30 ~~i~di~~~~~l~~~~~gk~V~I~GwV~siR~~Gk~kl~Fi~LRDgsg~~~lQVVv~~~~~~~~-~~L~~esvV~V~G~v 108 (359)
++++++.. -..+..|+|.|.|.+.-..- + +.+||++|. |+|-++.+. |. ..+.+++-|.|.|.|
T Consensus 26 ~TV~~a~~------~~Dd~~V~L~G~Iv~~~~~d--~---Y~F~D~TG~--I~VeId~~~--w~g~~v~p~~~Vri~Gev 90 (109)
T 1nnx_A 26 TTVESAKS------LRDDTWVTLRGNIVERISDD--L---YVFKDASGT--INVDIDHKR--WNGVTVTPKDTVEIQGEV 90 (109)
T ss_dssp CCHHHHTT------SCSSEEEEEEEEEEEEEETT--E---EEEEETTEE--EEEECCGGG--STTCCCCTTSCEEEEEEE
T ss_pred EeHHHHhh------CcCCCeEEEEEEEEEEeCCC--e---EEEECCCcc--EEEEEChhh--cCCcccCCCCEEEEEEEE
Confidence 46666652 34688999999997543322 2 468999985 999887765 33 468999999999999
Q ss_pred eCCCCCCcccEEEEEeEEEEee
Q 018229 109 KNPPEGTKQKIELRVQKVVDVG 130 (359)
Q Consensus 109 ~~s~~~~~g~lEL~a~~i~vLs 130 (359)
-+.- ...||.|..|++|.
T Consensus 91 Dkd~----~~~eIdV~~i~~~~ 108 (109)
T 1nnx_A 91 DKDW----NSVEIDVKQIRKVN 108 (109)
T ss_dssp EEET----TEEEEEEEEEEEC-
T ss_pred CCCC----CceEEEEEEEEEcc
Confidence 8542 35699999998875
No 66
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=95.38 E-value=0.0091 Score=63.47 Aligned_cols=33 Identities=12% Similarity=0.204 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHH-hCCcEEEccCeeecC
Q 018229 164 AVARIRNALAYATHTFLQ-KQGFLYIHTPIITTS 196 (359)
Q Consensus 164 ai~riRS~I~~~iR~fL~-~~gF~EV~TPiLt~~ 196 (359)
.-.+++..|...+|+.|. ..||.||.||+|++.
T Consensus 99 ~G~~l~~~Ie~~~r~~~~~~~g~~EV~tP~l~~~ 132 (693)
T 2zt5_A 99 VGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPE 132 (693)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHTCEECCCCSEEEH
T ss_pred ChHHHHHHHHHHHHHHHHHhcCcEEEEeCCcccH
Confidence 446899999999999998 569999999999874
No 67
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=95.00 E-value=0.044 Score=56.32 Aligned_cols=30 Identities=33% Similarity=0.543 Sum_probs=26.2
Q ss_pred ceEEEeceeecCCCCCCCccccccccceeec
Q 018229 323 NVYTFGPTFRAEHSHTSRHLAEFWMVEPEMA 353 (359)
Q Consensus 323 ~Vy~~~p~fRaE~~~t~rHl~EF~mle~E~a 353 (359)
|+|++|+|||.|..+ ..|+++|+|+|.-++
T Consensus 349 riFeiGrVFR~d~~D-atHlpeFhQlegl~~ 378 (508)
T 3l4g_A 349 KYFSIDRVFRNETLD-ATHLAEFHQIEGVVA 378 (508)
T ss_dssp EEEEEEEEECCSCCC-SSSCSEEEEEEEEEE
T ss_pred eEEEEccEEecCCCC-CCcCCeEEEEEEEEE
Confidence 899999999999875 589999999997653
No 68
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=94.94 E-value=0.11 Score=42.65 Aligned_cols=82 Identities=16% Similarity=0.193 Sum_probs=57.8
Q ss_pred CEEEEEEEEeec---c----cCCCceeEEEEEecCCCCceEEEEEeCChhhhccCCCCCcEEEEE-eEEeCCCCCCcccE
Q 018229 48 RQVRVGGWVKTG---R----EQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVE-GMLKNPPEGTKQKI 119 (359)
Q Consensus 48 k~V~I~GwV~si---R----~~Gk~kl~Fi~LRDgsg~~~lQVVv~~~~~~~~~~L~~esvV~V~-G~v~~s~~~~~g~l 119 (359)
..|.+.|.|.++ | +.|++.+.=+.|.|.||. |.+.+..+. ...+..|++|.|. |.+..- .|.+
T Consensus 13 ~~v~~~~~V~~~~~~~~~~~k~G~~~~~~~~l~D~TG~--I~~tlW~~~---~~~~~~G~vv~i~~g~v~~~----~g~~ 83 (119)
T 1o7i_A 13 ESVNVTVRVLEASEARQIQTKNGVRTISEAIVGDETGR--VKLTLWGKH---AGSIKEGQVVKIENAWTTAF----KGQV 83 (119)
T ss_dssp SSEEEEEEEEEECCCEEECCTTCCEEEEEEEEEETTEE--EEEEEEGGG---TTCCCTTCEEEEEEEEEEEE----TTEE
T ss_pred CcEEEEEEEEECCCCeeEEecCCCEEEEEEEEEeCCCE--EEEEEECCh---hhcCCCCCEEEEEeEEEEEe----CCEE
Confidence 368899999776 4 334224777889999985 888887654 2457899999999 887643 5779
Q ss_pred EEEEeEEEEeecCCCCCCC
Q 018229 120 ELRVQKVVDVGMVDPAKYP 138 (359)
Q Consensus 120 EL~a~~i~vLs~a~~~~~P 138 (359)
+|.+.+...+.++....+|
T Consensus 84 qL~i~~~~~i~~~~~~~~~ 102 (119)
T 1o7i_A 84 QLNAGSKTKIAEASEDGFP 102 (119)
T ss_dssp EEEECTTCEEEECCCTTCC
T ss_pred EEEECCCEEEEEcCCcCCC
Confidence 9999875555554323455
No 69
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=94.83 E-value=0.014 Score=60.14 Aligned_cols=34 Identities=21% Similarity=0.250 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHH-HHHhCCcEEEccCeeecCC
Q 018229 164 AVARIRNALAYATHT-FLQKQGFLYIHTPIITTSD 197 (359)
Q Consensus 164 ai~riRS~I~~~iR~-fL~~~gF~EV~TPiLt~~~ 197 (359)
.-.+++..|.+.+++ ++.+.||.||.||+|.+..
T Consensus 229 ~G~~L~~~L~~~~~~e~~~~~G~~EV~tP~L~~~e 263 (522)
T 2cja_A 229 QSARIFRTFEKIVLEELLEPLGYREMIFPKLVTWE 263 (522)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHTCEECBCCSEEEHH
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCEEEECCCcccHH
Confidence 456788899999996 5889999999999998753
No 70
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A*
Probab=94.78 E-value=0.014 Score=57.16 Aligned_cols=34 Identities=15% Similarity=0.107 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEccCeeecCCC
Q 018229 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTSDC 198 (359)
Q Consensus 164 ai~riRS~I~~~iR~fL~~~gF~EV~TPiLt~~~~ 198 (359)
.--+++..+...+|+ ..++||.||-||.|.....
T Consensus 62 ~~a~L~~aLe~~~~~-~~~~Gy~ev~~P~lv~~~~ 95 (346)
T 3mf2_A 62 LYESIVERLAALITS-HREAGTEALRFPPVMSRAQ 95 (346)
T ss_dssp HHHHHHHHHHHHHHH-TCCTTCEEEECCSEEEHHH
T ss_pred hHHHHHHHHHHHHHh-hHhcCCeEEECCCccCHHH
Confidence 345778889999999 8899999999999987643
No 71
>3kf8_A Protein STN1; OB fold; 2.40A {Candida tropicalis mya-3404}
Probab=94.13 E-value=0.41 Score=44.03 Aligned_cols=85 Identities=20% Similarity=0.196 Sum_probs=57.9
Q ss_pred CEEEEEEEEeecccCCCc------eeEEEEEecCCCCc-eEEEEEeCChhh-h---ccCCCCCcEEEEEeEEeCCCC---
Q 018229 48 RQVRVGGWVKTGREQGKG------SFAFLEVNDGSCPA-NLQVIVDKDVAD-L---GQLVPTGTCVYVEGMLKNPPE--- 113 (359)
Q Consensus 48 k~V~I~GwV~siR~~Gk~------kl~Fi~LRDgsg~~-~lQVVv~~~~~~-~---~~~L~~esvV~V~G~v~~s~~--- 113 (359)
+.|.|.|.|-..+-.-.. ...|+.|-|.||.. .|.|.++..... . ......|.+|.|+|.+..-..
T Consensus 86 ~~V~IvG~VVg~~~k~~r~~~~~~~~~~l~IDDsSG~~s~i~~k~~~~~~~~~gl~l~~~~~G~iV~VkG~i~~~r~~~~ 165 (220)
T 3kf8_A 86 NQINIFGKIVYEQYKEKEFNGVEESYVILVISDFIGIDSKIRVRLSQEQFKEVGLTLDKKNYGKIVELEGEIYNWYDSIN 165 (220)
T ss_dssp CEEEEEEEEEEEEEECCBCSSCBCCEEEEEEECCCSSSCEEEEEEEHHHHHTTTCCTTSCCTTCEEEEEEEEEECCCSTT
T ss_pred EEEEEEEEEEEEEEEeccccccccceEEEEEeCCCCCCceEEEEecHHHhhccCccccccCCCeEEEEEEEEEeeccccc
Confidence 569999999888644310 46999999999952 466666644311 0 112457999999999976421
Q ss_pred -CCcccEEEEEeEEEEeecC
Q 018229 114 -GTKQKIELRVQKVVDVGMV 132 (359)
Q Consensus 114 -~~~g~lEL~a~~i~vLs~a 132 (359)
.+.-.-||+++++.+++..
T Consensus 166 ~~~~~~rei~ve~i~vl~~~ 185 (220)
T 3kf8_A 166 VSKKPDRELKVSKITVLSHR 185 (220)
T ss_dssp TTSCCCEEEEEEEEEEEESS
T ss_pred cccccceEEEEEEEEEeccC
Confidence 0111469999999999864
No 72
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=94.10 E-value=0.67 Score=37.55 Aligned_cols=78 Identities=10% Similarity=0.080 Sum_probs=58.5
Q ss_pred CCEEEEEEEEeecc--cCCCceeEEEEEecCCCCceEEEEEeCChhhhccCCCCCcEEEEE-eEEeCCCCCCcccEEEEE
Q 018229 47 GRQVRVGGWVKTGR--EQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVE-GMLKNPPEGTKQKIELRV 123 (359)
Q Consensus 47 gk~V~I~GwV~siR--~~Gk~kl~Fi~LRDgsg~~~lQVVv~~~~~~~~~~L~~esvV~V~-G~v~~s~~~~~g~lEL~a 123 (359)
++.|.+.|.|.++- +.++ ....+.|.|.||. |-+++..+. ....+..|++|.|. |.+..- .|.++|.+
T Consensus 15 ~~~v~v~~~V~~~~~~~~~~-~~~~~~l~DeTG~--I~~t~W~~~--~~~~~~~G~~V~i~n~~v~~~----~G~~~L~v 85 (109)
T 2kbn_A 15 GQWANLKAKVIQLWENTHES-ISQVGLLGDETGI--IKFTIWKNA--ELPLLEQGESYLLRSVVVGEY----NDRFQVQV 85 (109)
T ss_dssp TCEEEEEEEEEEEEECCCSS-EEEEEEEECTTCC--EEEEEEGGG--CCCCCCTTCEEEEEEEEEEEE----TTEEEEEE
T ss_pred CCcEEEEEEEEEeEcCCCCe-EEEEEEEECCCCe--EEEEEECcc--cccccCCCCEEEEEEEEEEEE----CCEEEEEE
Confidence 67899999998863 3332 4566899999996 888887632 23568999999999 677653 57899999
Q ss_pred eEEEEeecCC
Q 018229 124 QKVVDVGMVD 133 (359)
Q Consensus 124 ~~i~vLs~a~ 133 (359)
.+...+.+.+
T Consensus 86 ~~~~~I~~~~ 95 (109)
T 2kbn_A 86 NKNSSIEKLS 95 (109)
T ss_dssp CSSSEEEECS
T ss_pred CCceEEEECC
Confidence 8776666544
No 73
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A
Probab=93.48 E-value=0.55 Score=39.18 Aligned_cols=71 Identities=14% Similarity=0.158 Sum_probs=49.2
Q ss_pred CCCCCEEEEEEEEeecccCCCceeEEEEEecCCCCceEEEEEeCChhhhccCCCCCcEEEEEeEEeCCCCCCcccEEEEE
Q 018229 44 GLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRV 123 (359)
Q Consensus 44 ~~~gk~V~I~GwV~siR~~Gk~kl~Fi~LRDgsg~~~lQVVv~~~~~~~~~~L~~esvV~V~G~v~~s~~~~~g~lEL~a 123 (359)
.++|+.|+|-|+|.+++..| +. +.|.++.| +.++|.+.... ...+ +.+|+|.|+|... ..|.+
T Consensus 19 ~fvgk~VrivGkV~~~~~~g--~~--~~l~s~Dg-~~Vtv~l~~p~---~~~l--~~~vEViG~V~~~-------~tI~~ 81 (121)
T 3kdf_A 19 QFIDKPVCFVGRLEKIHPTG--KM--FILSDGEG-KNGTIELMEPL---DEEI--SGIVEVVGRVTAK-------ATILC 81 (121)
T ss_dssp GGTTCEEEEEEEEEEECTTS--SE--EEEECTTS-CEEEEECSSCC---SSCC--CSEEEEEEEECTT-------SCEEE
T ss_pred hhCCCeEEEEEEEEEEcCCC--CE--EEEEeCCC-CEEEEEeCCCC---Cccc--CcEEEEEEEECCC-------CeEEE
Confidence 67899999999999999888 43 34555444 35888876632 1223 4599999999643 24777
Q ss_pred eEEEEeec
Q 018229 124 QKVVDVGM 131 (359)
Q Consensus 124 ~~i~vLs~ 131 (359)
..+..++.
T Consensus 82 ~~~~~fg~ 89 (121)
T 3kdf_A 82 TSYVQFKE 89 (121)
T ss_dssp EEEEECCC
T ss_pred EEEEecCC
Confidence 76666654
No 74
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=93.45 E-value=0.078 Score=43.40 Aligned_cols=81 Identities=16% Similarity=0.188 Sum_probs=59.1
Q ss_pred EEEEEEEEeec---------ccCCCceeEEEEEecCCCCceEEEEEeCChh-hhccCCCCCcEEEEEe-EEeCCCCC---
Q 018229 49 QVRVGGWVKTG---------REQGKGSFAFLEVNDGSCPANLQVIVDKDVA-DLGQLVPTGTCVYVEG-MLKNPPEG--- 114 (359)
Q Consensus 49 ~V~I~GwV~si---------R~~Gk~kl~Fi~LRDgsg~~~lQVVv~~~~~-~~~~~L~~esvV~V~G-~v~~s~~~--- 114 (359)
.++|+|||.++ +..| ++.=++|.|.+| .|++.+..+.. .|...|..|+++.|.| .|+.....
T Consensus 16 ~w~I~~rV~~k~~~r~~~~~~~~g--~~~~~~L~De~G--~I~at~~~~~~~~f~~~l~eG~vy~Is~~~V~~a~~~y~~ 91 (114)
T 1ynx_A 16 VWTIKARVSYKGEIKTWHNQRGDG--KLFNVNFLDTSG--EIRATAFNDFATKFNEILQEGKVYYVSKAKLQPAKPQFTN 91 (114)
T ss_dssp CCEEEEEEEEEEEEEEEECSSCEE--EEEEEEEEETTE--EEEEEECHHHHHHHHHHSCSSSEEEEESCEEEECCTTTSS
T ss_pred ceEEEEEEEEeccceEEecCCCCc--eEEEEEEECCCC--eEEEEECHHHHHHHHhhcccCcEEEECCcEEEECCCCccc
Confidence 48888888753 2234 788889999998 59999987653 3566799999999986 45543321
Q ss_pred CcccEEEEEeEEEEeecCC
Q 018229 115 TKQKIELRVQKVVDVGMVD 133 (359)
Q Consensus 115 ~~g~lEL~a~~i~vLs~a~ 133 (359)
....+||....-..+.+|.
T Consensus 92 ~~~~yei~f~~~T~I~~~~ 110 (114)
T 1ynx_A 92 LTHPYELNLDRDTVIEECF 110 (114)
T ss_dssp SSSCEEEEECSSCEEEESC
T ss_pred CCCCEEEEECCCCEEEECC
Confidence 3578999988777777664
No 75
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A*
Probab=93.42 E-value=0.61 Score=46.54 Aligned_cols=76 Identities=20% Similarity=0.287 Sum_probs=59.9
Q ss_pred CCCCEEEEEEEEeec--ccCCCceeEEEEEecCCCCceEEEEEeCCh---hhhccCCCCCcEEEEEeEEeCCCCCCcccE
Q 018229 45 LAGRQVRVGGWVKTG--REQGKGSFAFLEVNDGSCPANLQVIVDKDV---ADLGQLVPTGTCVYVEGMLKNPPEGTKQKI 119 (359)
Q Consensus 45 ~~gk~V~I~GwV~si--R~~Gk~kl~Fi~LRDgsg~~~lQVVv~~~~---~~~~~~L~~esvV~V~G~v~~s~~~~~g~l 119 (359)
.....++|.|.|.+. +..| +=+|+.|.|+++ .|.|++-... -+....|..||.|.|.|-++. |
T Consensus 282 ~~~~~~~v~G~V~~~P~~~~G--GHV~f~l~d~~~--~i~c~ayeptk~fr~~vr~L~~GD~V~v~G~v~~------g-- 349 (402)
T 3au7_A 282 ENYRSYRLRGRVTLEPYDIEG--GHVFFEIDTKFG--SVKCAAFEPTKQFRNVIRLLRKGDVVEVYGSMKK------D-- 349 (402)
T ss_dssp CTTCEEEEEEEEEEEEEEETT--TEEEEEEEETTE--EEEEEECGGGTTHHHHHTTCCTTCEEEEEEEEET------T--
T ss_pred ccCceEEEEEEEecCcEeccC--ceEEEEEEcCCC--EEEEEEEccchHHHHHHhcCCCCCEEEEEEeecC------C--
Confidence 356899999999987 4444 578999999865 4999986632 235677899999999999864 2
Q ss_pred EEEEeEEEEeecC
Q 018229 120 ELRVQKVVDVGMV 132 (359)
Q Consensus 120 EL~a~~i~vLs~a 132 (359)
.|.++++++++-+
T Consensus 350 tLnvEk~~v~~l~ 362 (402)
T 3au7_A 350 TINLEKIQIVELA 362 (402)
T ss_dssp EEEEEEEEEEECC
T ss_pred EEEEEEEEEcccC
Confidence 7999999999764
No 76
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=92.87 E-value=0.23 Score=50.40 Aligned_cols=48 Identities=15% Similarity=0.075 Sum_probs=29.7
Q ss_pred ccccc-cHHHHHHHHHccc--c------ceEEEeceeecCCC-CCCCc----ccccccccee
Q 018229 304 AFLTV-SGQLQVETYACAV--S------NVYTFGPTFRAEHS-HTSRH----LAEFWMVEPE 351 (359)
Q Consensus 304 ~~L~~-S~ql~~e~~~~~~--~------~Vy~~~p~fRaE~~-~t~rH----l~EF~mle~E 351 (359)
.||.. .-|-+...|-..+ . ++.+||+|||+|.. .+.+| .-||+|+|++
T Consensus 147 ~~LRPeTaqg~~~nfk~~~~s~r~~LP~~iaqig~~FR~E~g~~~~~~GL~RvrEFtq~E~~ 208 (459)
T 3ikl_A 147 GGLRENLLHGALEHYVNCLDLVNKRLPYGLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASLV 208 (459)
T ss_dssp TB-CSCSHHHHHHHTTTTTGGGTTBSSEEEEEEEEEECCC----------CCCCEEEEEEEE
T ss_pred ceECCCCChhHHHHHhhhhhhccccCCeEEEEEeeeeecccccccCCCCcccccceeeeeEE
Confidence 67776 5566666654332 1 48899999999952 13333 3799999987
No 77
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=92.61 E-value=0.59 Score=37.76 Aligned_cols=79 Identities=14% Similarity=0.147 Sum_probs=55.1
Q ss_pred CEEEEEEEEeec-----ccCCC-ceeEEEEEecCCCCceEEEEEeCChhhhccCCCCCcEEEEE-eEEeCCCCCCcccEE
Q 018229 48 RQVRVGGWVKTG-----REQGK-GSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVE-GMLKNPPEGTKQKIE 120 (359)
Q Consensus 48 k~V~I~GwV~si-----R~~Gk-~kl~Fi~LRDgsg~~~lQVVv~~~~~~~~~~L~~esvV~V~-G~v~~s~~~~~g~lE 120 (359)
..|.+.|.|.++ ++.|+ +.+.=+.|.|.||. |.+.+..+. +..|++|.|. |.+..- .|.++
T Consensus 14 ~~v~v~~~V~~~~~~~~~k~G~~~~v~~~~l~DeTG~--I~~tlW~~~------l~~Gdvv~i~ng~v~~~----~g~~~ 81 (106)
T 2k75_A 14 PYVSVIGKITGIHKKEYESDGTTKSVYQGYIEDDTAR--IRISSFGKQ------LQDSDVVRIDNARVAQF----NGYLS 81 (106)
T ss_dssp SEEEEEEEEEEEEEEEEEETTEEEEEEEEEEECSSCE--EEEEEESSC------CCTTEEEEEEEEEEEEE----TTEEE
T ss_pred ceEEEEEEEEEccccccccCCCeeEEEEEEEEcCCCe--EEEEEEcCc------cCCCCEEEEEeeEEeEE----CCEEE
Confidence 457888888664 23451 01667889999985 888876652 8999999999 777643 57899
Q ss_pred EEEeEEEEeecCCCCCCCC
Q 018229 121 LRVQKVVDVGMVDPAKYPI 139 (359)
Q Consensus 121 L~a~~i~vLs~a~~~~~Pi 139 (359)
|.+.+...|.+.. ...|+
T Consensus 82 L~v~~~~~I~~~~-~~~~~ 99 (106)
T 2k75_A 82 LSVGDSSRIESVN-VNIPL 99 (106)
T ss_dssp EEECTTSEEEECC-SCCCC
T ss_pred EEECCcEEEEECC-CCCcc
Confidence 9998766666654 33444
No 78
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A
Probab=92.08 E-value=0.49 Score=39.17 Aligned_cols=52 Identities=23% Similarity=0.264 Sum_probs=41.5
Q ss_pred EEEEEeCChhhhccCCCCCcEEEEEeEEeCCCCCCcccEEEEEeEEEEeecCC
Q 018229 81 LQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVD 133 (359)
Q Consensus 81 lQVVv~~~~~~~~~~L~~esvV~V~G~v~~s~~~~~g~lEL~a~~i~vLs~a~ 133 (359)
|+||+..+.....+.|+.|+-|.|+|.+..+.. ....++|++++|+.|+...
T Consensus 49 i~vv~~Gk~AE~~~~l~kGs~V~VeGrL~trs~-~G~kl~l~a~~Ie~l~~~~ 100 (115)
T 3fhw_A 49 ISAVALGDLALLLADTPLGTEMQVQGFLAPARK-DSVKVKLHLQQARRIAGSM 100 (115)
T ss_dssp EEEEEETHHHHHHTTCCTTCEEEEEEEEEESST-TCSSEEEEEEEEEECCCSC
T ss_pred EEEEEEhHHHHhhhccCCCCEEEEEEEEEECCC-CCCEEEEEEEEEEEcCCCC
Confidence 889988876444477999999999999987542 2367999999999997653
No 79
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=91.99 E-value=0.12 Score=52.19 Aligned_cols=33 Identities=9% Similarity=0.072 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHH--HhCCcEEEccCeeecCC
Q 018229 165 VARIRNALAYATHTFL--QKQGFLYIHTPIITTSD 197 (359)
Q Consensus 165 i~riRS~I~~~iR~fL--~~~gF~EV~TPiLt~~~ 197 (359)
=.+++..|...+++.+ .+.|+.||.||+|.+..
T Consensus 61 G~~l~~~i~~~~~~~~~~~~~g~~ev~tp~l~~~~ 95 (454)
T 1g5h_A 61 GVELRKNLASQWWSSMVVFREQVFAVDSLHQEPGS 95 (454)
T ss_dssp HHHHHHHHHHHHHHHHTTTCTTEEECCCCSEECCC
T ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEEcCccCChh
Confidence 4678999999888774 58999999999998765
No 80
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=91.38 E-value=0.22 Score=56.10 Aligned_cols=80 Identities=16% Similarity=0.169 Sum_probs=47.9
Q ss_pred CCCCEEEEEEEEeecccC----CCceeEEEEEecCCCCceEEEEEeCChh-hhccCCCCCcEEEEEeEEeCCCCCCcccE
Q 018229 45 LAGRQVRVGGWVKTGREQ----GKGSFAFLEVNDGSCPANLQVIVDKDVA-DLGQLVPTGTCVYVEGMLKNPPEGTKQKI 119 (359)
Q Consensus 45 ~~gk~V~I~GwV~siR~~----Gk~kl~Fi~LRDgsg~~~lQVVv~~~~~-~~~~~L~~esvV~V~G~v~~s~~~~~g~l 119 (359)
..|+.|+|.|.|..++.. |+ .++|+.|.|.+|. +.|++.++.. .+...|..+.+|.|+|.|... . .+
T Consensus 1040 ~~g~~v~v~G~v~~~~~~~Tk~G~-~maf~tleD~tg~--~evvvf~~~~~~~~~~l~~~~~~~v~G~v~~~----~-~~ 1111 (1220)
T 2hpi_A 1040 PGKPKVLLSGMVEEVVRKPTRSGG-MMARFTLSDETGA--LEVVVFGRAYEGVSPKLKEDIPLLVLAEVEKG----E-EL 1111 (1220)
T ss_dssp SSSCEEEEEEEECCC-------------CEEEEETTEE--EEEC-------------CTTCEEEEEEEEC----------
T ss_pred cCCCeEEEEEEEEEEEEeecCCCC-eEEEEEEEECCCC--EEEEEcHHHHHHHHHHhccCCEEEEEEEEEEC----C-Cc
Confidence 468899999999887643 33 4999999999986 9999887753 345568899999999999753 1 46
Q ss_pred EEEEeEEEEeecC
Q 018229 120 ELRVQKVVDVGMV 132 (359)
Q Consensus 120 EL~a~~i~vLs~a 132 (359)
.|.++++.-+...
T Consensus 1112 ~l~~~~i~~l~~~ 1124 (1220)
T 2hpi_A 1112 RVLAQAVWTLEEV 1124 (1220)
T ss_dssp CEEEEEEEEHHHH
T ss_pred EEEEeeeecHHHH
Confidence 7888888766543
No 81
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A
Probab=91.14 E-value=0.27 Score=49.13 Aligned_cols=48 Identities=19% Similarity=0.338 Sum_probs=33.8
Q ss_pred Cccccccc--cHHHHHHHHHccccceEEEeceeecCCCCCCCccccccccce
Q 018229 301 ARQAFLTV--SGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEP 350 (359)
Q Consensus 301 ~~~~~L~~--S~ql~~e~~~~~~~~Vy~~~p~fRaE~~~t~rHl~EF~mle~ 350 (359)
+....|.. ||.+ ++++.....|+|++|.|||.+..+ ..|.++|.++|-
T Consensus 111 ~~~~vLRThts~~~-~~~l~~~~~k~~~~G~VyR~D~~d-a~h~n~fhQ~eg 160 (415)
T 3cmq_A 111 NRTHMLRAHTSAHQ-WDLLHAGLDAFLVVGDVYRRDQID-SQHYPIFHQLEA 160 (415)
T ss_dssp SSSEEECSSGGGGH-HHHHHTTCSEEEEEEEEECCCCCB-TTBCSEEEEEEE
T ss_pred cCCeEEcCCCcHHH-HHHHHHCCCCEEEeeeEEeccchh-hhhhHHhcCCCc
Confidence 45555533 2322 334555567999999999999776 579999999884
No 82
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=89.66 E-value=0.53 Score=42.73 Aligned_cols=84 Identities=18% Similarity=0.232 Sum_probs=58.2
Q ss_pred CEEEEEEEEeec---cc----CCCceeEEEEEecCCCCceEEEEEeCChh-hhccCCCCCcEEEEEe-EEeCCCC---CC
Q 018229 48 RQVRVGGWVKTG---RE----QGKGSFAFLEVNDGSCPANLQVIVDKDVA-DLGQLVPTGTCVYVEG-MLKNPPE---GT 115 (359)
Q Consensus 48 k~V~I~GwV~si---R~----~Gk~kl~Fi~LRDgsg~~~lQVVv~~~~~-~~~~~L~~esvV~V~G-~v~~s~~---~~ 115 (359)
..++|+|+|.++ |. .|.+++.-++|.|.+| .|++.+..+.. .|...|..|+++.|.+ .|+.... ..
T Consensus 19 ~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G--~I~at~~~~~~~~~~~~l~~G~vy~i~~~~v~~~~~~y~~~ 96 (246)
T 1jmc_A 19 SKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESG--EIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTAV 96 (246)
T ss_dssp CCCEEEEEEEEECCCEEEECSSCEEEEEEEEEECSSC--EEEEEEEHHHHHHHGGGCCTTCEEEEECCEEEECCGGGCCC
T ss_pred CceEEEEEEEEecccceeeCCCCCceEEEEEEECCCC--eEEEEEChHHHHHhhhhcccCCEEEECCCEEEEcccCcccC
Confidence 368899999865 21 1222677788999998 59999987653 3567799999999987 4443321 13
Q ss_pred cccEEEEEeEEEEeecCC
Q 018229 116 KQKIELRVQKVVDVGMVD 133 (359)
Q Consensus 116 ~g~lEL~a~~i~vLs~a~ 133 (359)
.+.+||....-..+.+|.
T Consensus 97 ~~~~ei~~~~~T~I~~~~ 114 (246)
T 1jmc_A 97 KNDYEMTFNNETSVMPCE 114 (246)
T ss_dssp CCSEEEECCTTCEEEECC
T ss_pred CCCEEEEEcCCcEEEEcc
Confidence 578999987655555553
No 83
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=89.64 E-value=2.6 Score=36.06 Aligned_cols=72 Identities=15% Similarity=0.144 Sum_probs=47.1
Q ss_pred CCCCCCEEEEEEEEeecccCCCceeEEEEEecCCCCceEEEEEeCChhhhccCCCCCcEEEEEeEEeCCCCCCcccEEEE
Q 018229 43 AGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTKQKIELR 122 (359)
Q Consensus 43 ~~~~gk~V~I~GwV~siR~~Gk~kl~Fi~LRDgsg~~~lQVVv~~~~~~~~~~L~~esvV~V~G~v~~s~~~~~g~lEL~ 122 (359)
..++|+.|+|-|+|.++-..| +. +.|+...+ ..|+|.+.... . -..+-+|+|.|+|... ..|.
T Consensus 39 ~~fvGk~VriVGkV~~~~~~G--~~--~~l~s~Dg-~~VtV~l~~pL---~--~~~~~~VEViG~V~~~-------~tI~ 101 (142)
T 2pi2_E 39 AQFIDKPVCFVGRLEKIHPTG--KM--FILSDGEG-KNGTIELMEPL---D--EEISGIVEVVGRVTAK-------ATIL 101 (142)
T ss_dssp GGSTTCEEEEEEEEEEECTTS--SE--EEEECTTS-CEEEEECSSCC---S--SCCCSEEEEEEEECTT-------SCEE
T ss_pred HhhCCCEEEEEEEEeEEcCCC--CE--EEEEeCCC-cEEEEEeCCCC---C--ccCCCEEEEEEEECCC-------CcEE
Confidence 367899999999999885556 23 35666555 35777765421 1 1347799999999542 2366
Q ss_pred EeEEEEeec
Q 018229 123 VQKVVDVGM 131 (359)
Q Consensus 123 a~~i~vLs~ 131 (359)
+..+.-++.
T Consensus 102 ~~~~~~fGd 110 (142)
T 2pi2_E 102 CTSYVQFKE 110 (142)
T ss_dssp EEEEEECCC
T ss_pred EEEEEecCC
Confidence 665554543
No 84
>1j6q_A Cytochrome C maturation protein E; all-beta protein, heme delivery,cytochrome C maturation, OB- (oligonucleotide binding)fold; NMR {Shewanella putrefaciens} SCOP: b.40.9.1 PDB: 1lm0_A
Probab=89.34 E-value=4.1 Score=34.67 Aligned_cols=77 Identities=26% Similarity=0.357 Sum_probs=52.2
Q ss_pred CCCCCEEEEEEEEe--ecccC--CCceeEEEEEec-CCCCceEEEEEeCChhhhccCCCCCcEEEEEeEEeCCCCCCccc
Q 018229 44 GLAGRQVRVGGWVK--TGREQ--GKGSFAFLEVND-GSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTKQK 118 (359)
Q Consensus 44 ~~~gk~V~I~GwV~--siR~~--Gk~kl~Fi~LRD-gsg~~~lQVVv~~~~~~~~~~L~~esvV~V~G~v~~s~~~~~g~ 118 (359)
...|+.|+|.|.|. ++... +. .+.|. |.| +.. .|.|+...-.. ..++-|.-|.|+|.+.... .
T Consensus 29 ~~~g~~iRvgG~V~~GSv~r~~~~~-~v~F~-vtD~~~~--~v~V~Y~GilP---DlFrEGqgVVa~G~l~~~g-----~ 96 (136)
T 1j6q_A 29 PEAGQRIRVGGMVTVGSMVRDPNSL-HVQFA-VHDSLGG--EILVTYDDLLP---DLFREGQGIVAQGVLGEDG-----K 96 (136)
T ss_dssp SCTTCEEEEEEEECTTCCEECTTSS-CEEEE-EECTTCC--CEEEEECSCCT---TSCCSSSEEEEEEEECSTT-----S
T ss_pred CCCCCEEEEeEEEeCCcEEecCCCC-EEEEE-EEcCCCC--EEEEEECCCCC---ccccCCCeEEEEEEECCCC-----e
Confidence 46789999999996 45332 32 58875 788 654 59999877543 3467899999999996432 1
Q ss_pred EEEEEeEEEEeecCCCCCC
Q 018229 119 IELRVQKVVDVGMVDPAKY 137 (359)
Q Consensus 119 lEL~a~~i~vLs~a~~~~~ 137 (359)
++++ +||.+|+ ..|
T Consensus 97 --F~A~--eVLaKhd-ekY 110 (136)
T 1j6q_A 97 --LAAT--EVLAKHD-ENY 110 (136)
T ss_dssp --EEEE--EEECCC-----
T ss_pred --EEEE--EEEecCC-CCC
Confidence 6666 4799997 555
No 85
>4gop_A Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=87.47 E-value=1.2 Score=36.67 Aligned_cols=56 Identities=23% Similarity=0.305 Sum_probs=40.7
Q ss_pred CCCCCEEEEEEEEeecccCCCceeEEEEEecCCCCceEEEEEeCChhhhccCCCCCcEEEEEeEEeCC
Q 018229 44 GLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNP 111 (359)
Q Consensus 44 ~~~gk~V~I~GwV~siR~~Gk~kl~Fi~LRDgsg~~~lQVVv~~~~~~~~~~L~~esvV~V~G~v~~s 111 (359)
.+.|+.|+|-|+|.+++. + . +.|....+ ..|+|.+.... .+..+.+|+|.|+|...
T Consensus 15 ~~~g~~VrivGkV~~~~g-~---~--~~l~s~d~-~~Vtv~l~~~~-----~~~~~~~vEViG~V~~~ 70 (114)
T 4gop_A 15 QYVGQTVRIVGKVHKVTG-N---T--LLMQTSDL-GNVEIAMTPDS-----DVSSSTFVEVTGKVSDA 70 (114)
T ss_dssp GGTTSEEEEEEEEEEEET-T---E--EEEECTTS-CEEEEECCSSC-----CGGGCSEEEEEEEECTT
T ss_pred hhCCCeEEEEEEEeeeCC-C---E--EEEEeCCC-CEEEEEeCCCC-----CcccCcEEEEEEEEcCC
Confidence 578999999999999985 3 2 45665444 35887766542 23468999999999744
No 86
>1sr3_A APO-CCME; OB fold, beta barrel, flexible C-terminal domain, chaperone; NMR {Escherichia coli} SCOP: b.40.9.1
Probab=87.24 E-value=3.2 Score=35.33 Aligned_cols=78 Identities=22% Similarity=0.350 Sum_probs=55.3
Q ss_pred CCCCCEEEEEEEEe--ecccC--CCceeEEEEEecCCCCceEEEEEeCChhhhccCCCCCcEEEEEeEEeCCCCCCcccE
Q 018229 44 GLAGRQVRVGGWVK--TGREQ--GKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTKQKI 119 (359)
Q Consensus 44 ~~~gk~V~I~GwV~--siR~~--Gk~kl~Fi~LRDgsg~~~lQVVv~~~~~~~~~~L~~esvV~V~G~v~~s~~~~~g~l 119 (359)
...|+.|+|.|.|. ++... +. .+.|. |.|+.. .|.|+...-.. ...+-|.-|.|+|.+....
T Consensus 25 ~~~g~~iRvgG~V~~GSv~r~~~~~-~v~F~-vtD~~~--~v~V~Y~GilP---DlFrEGqgVVa~G~l~~~g------- 90 (136)
T 1sr3_A 25 PEVGQRLRVGGMVMPGSVQRDPNSL-KVTFT-IYDAEG--SVDVSYEGILP---DLFREGQGVVVQGELEKGN------- 90 (136)
T ss_dssp CCTTSEEEEEEEECTTTCEECSSSS-EEEEE-EECSSC--EEEEEEESCCC---TTCCTTSEEEEEEEECSSS-------
T ss_pred CCCCCEEEEeeEEeCCcEEEcCCCC-EEEEE-EEeCCc--EEEEEECCCCC---ccccCCCeEEEEEEECCCC-------
Confidence 46789999999998 35332 32 57875 789754 69999887543 3467899999999996321
Q ss_pred EEEEeEEEEeecCCCCCCC
Q 018229 120 ELRVQKVVDVGMVDPAKYP 138 (359)
Q Consensus 120 EL~a~~i~vLs~a~~~~~P 138 (359)
-+.+++ ||.+|+ ..|-
T Consensus 91 ~F~A~e--VLAKhd-ekYm 106 (136)
T 1sr3_A 91 HILAKE--VLAKHD-ENYT 106 (136)
T ss_dssp EEEESS--CBCCSC-CCCC
T ss_pred eEEEEE--EEecCC-CCCC
Confidence 266664 799997 5563
No 87
>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090}
Probab=86.44 E-value=1.5 Score=35.39 Aligned_cols=47 Identities=21% Similarity=0.293 Sum_probs=38.0
Q ss_pred EEEEEeCChhhhccCCCCCcEEEEEeEEeCCCCCCcccEEEEEeEEEEe
Q 018229 81 LQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDV 129 (359)
Q Consensus 81 lQVVv~~~~~~~~~~L~~esvV~V~G~v~~s~~~~~g~lEL~a~~i~vL 129 (359)
++||+..+... ...|+.|+-|.|+|.+..+.- +...+.||+++|+.+
T Consensus 55 i~vv~~gk~Ae-~~~l~KG~~v~veGrL~~rs~-~~~~lvlhi~~i~~i 101 (103)
T 3k8a_A 55 IPARILGRQAE-EWQYRQGDCATVEGFLAQKSR-RSLMPMLRIQNIKEY 101 (103)
T ss_dssp EEEEEEHHHHH-HSTTCTTCEEEEEEEEEESSS-SCCCEEEEEEEEEEC
T ss_pred EEEEEEhHHhh-hhccCCCCEEEEEEEEEECcc-CCccEEEEEEEEEEc
Confidence 78888776545 556999999999999987763 345899999999876
No 88
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A
Probab=85.27 E-value=2.3 Score=34.02 Aligned_cols=50 Identities=16% Similarity=0.335 Sum_probs=34.7
Q ss_pred EEEEEeCChhh-hccCCCCCcEEEEEeEEeCCCC--CCcccEEEEEeEEEEeec
Q 018229 81 LQVIVDKDVAD-LGQLVPTGTCVYVEGMLKNPPE--GTKQKIELRVQKVVDVGM 131 (359)
Q Consensus 81 lQVVv~~~~~~-~~~~L~~esvV~V~G~v~~s~~--~~~g~lEL~a~~i~vLs~ 131 (359)
++|++..+... ..+.|+.|+-|.|+|.+..+.. |... .||++++|+.|+.
T Consensus 50 ~~vv~~g~~Ae~~~~~l~KG~~V~V~G~L~~~~~~~G~~r-~~v~~~~i~~l~~ 102 (104)
T 1txy_A 50 MPVIVSGHENQAITHSITVGSRITVQGFISCHKAKNGLSK-MVLHAEQIELIDS 102 (104)
T ss_dssp EEEEEESSTTHHHHTTCCTTCEEEEEEEEEC--------C-CEEEEEEEEEC--
T ss_pred EEEEEEhHHHHHHHhhCCCCCEEEEEEEEEeccCCCCCEE-EEEEEEEEEECcC
Confidence 78888776533 3466999999999999987621 2122 9999999998863
No 89
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=84.67 E-value=3.1 Score=35.95 Aligned_cols=52 Identities=17% Similarity=0.374 Sum_probs=37.1
Q ss_pred EEEEEeCChhh-hccCCCCCcEEEEEeEEeCCC----CC-CcccEEEEEeEEEEeecC
Q 018229 81 LQVIVDKDVAD-LGQLVPTGTCVYVEGMLKNPP----EG-TKQKIELRVQKVVDVGMV 132 (359)
Q Consensus 81 lQVVv~~~~~~-~~~~L~~esvV~V~G~v~~s~----~~-~~g~lEL~a~~i~vLs~a 132 (359)
+.|++..+... ..+.|+.|+.|.|+|.+.... .+ +...+||.+++|.+|...
T Consensus 58 i~vv~wg~~Ae~~~~~l~KG~~V~VeG~L~~~~~~dkdG~~r~~~eV~a~~i~~L~~k 115 (158)
T 3tqy_A 58 HRIAFFNRLAEIVGEYLRKGSKIYIEGSLRTRKWQDKNGVDRYTTEIIANEMHMLDNR 115 (158)
T ss_dssp EEEEEETHHHHHHHHHCCTTCEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEECC--
T ss_pred EEEEEEhHHHHHHHhhcCCCCEEEEEEEEEeeeEECCCCCEEEEEEEEEeEEEEccCC
Confidence 78888776533 345589999999999997642 12 224589999999999653
No 90
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=82.09 E-value=1.4 Score=43.80 Aligned_cols=83 Identities=11% Similarity=0.194 Sum_probs=57.2
Q ss_pred CEEEEEEEEeec---cc----CCCceeEEEEEecCCCCceEEEEEeCChh-hhccCCCCCcEEEEEeE-EeCCCC---CC
Q 018229 48 RQVRVGGWVKTG---RE----QGKGSFAFLEVNDGSCPANLQVIVDKDVA-DLGQLVPTGTCVYVEGM-LKNPPE---GT 115 (359)
Q Consensus 48 k~V~I~GwV~si---R~----~Gk~kl~Fi~LRDgsg~~~lQVVv~~~~~-~~~~~L~~esvV~V~G~-v~~s~~---~~ 115 (359)
..++|+|||.++ |. .|.+++.-++|.|.+| .|++++..+.. .|...|..|+++.|.+. |+.... ..
T Consensus 14 ~~w~I~~rV~~k~~ir~~~~~~~~g~~~~~~L~De~G--~I~at~~~~~~~~f~~~l~eG~vy~Is~~~V~~~~~~y~~~ 91 (444)
T 4gop_C 14 NRWTIKARVTSKSDIRHWSNQRGEGKLFSVNLLDDSG--EIKATGFNDAVDRFYPLLQENHVYLISKARVNIAKKQFSNL 91 (444)
T ss_dssp CSCEEEEECCEECCCEEEECSSCEEEEEEEEEECSSC--EEEEEEETHHHHHHTTTCCTTCEEEEESCEEEECCGGGCSC
T ss_pred cceEEEEEEEEccCcceecCCCCCceEEEEEEEcCCC--EEEEEEeHHHHHHHHHheecCCEEEEcCCEEEecCCccccC
Confidence 357899999743 32 1222788889999998 59999988753 46678999999999864 443321 13
Q ss_pred cccEEEEEeEEEEeecC
Q 018229 116 KQKIELRVQKVVDVGMV 132 (359)
Q Consensus 116 ~g~lEL~a~~i~vLs~a 132 (359)
.+.+||....-..+.++
T Consensus 92 ~~~~ei~~~~~T~V~~~ 108 (444)
T 4gop_C 92 QNEYEITFENSTEIEEC 108 (444)
T ss_dssp CCSEEEEECTTCEEEEC
T ss_pred CCCEEEEEcCCcEEEEc
Confidence 57899998754444443
No 91
>3mxn_B RECQ-mediated genome instability protein 2; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_B 3nbh_B
Probab=79.96 E-value=8.7 Score=33.17 Aligned_cols=72 Identities=21% Similarity=0.205 Sum_probs=48.5
Q ss_pred CEEEEEEEEeecccCCCceeEEEEEecCCCCceEEEEEeCChhhhccCCCCCcEEEEEeEEeCCCCCCcccEEEEEeEEE
Q 018229 48 RQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVV 127 (359)
Q Consensus 48 k~V~I~GwV~siR~~Gk~kl~Fi~LRDgsg~~~lQVVv~~~~~~~~~~L~~esvV~V~G~v~~s~~~~~g~lEL~a~~i~ 127 (359)
..|++.|-|-.. ..| . +.|+|++|. +-+-.-.+...-...++.|.+|-|.|.+.... .+-.|.+-++.
T Consensus 59 s~VWmQG~VV~~-~~g--~---~~LdDgTG~--~~v~g~~~vp~g~p~l~~G~YVMV~G~v~~~s----~eP~i~AvKm~ 126 (150)
T 3mxn_B 59 AAVWMQGRVVMA-DRG--E---ARLRDPSGD--FSVRGLERVPRGRPCLVPGKYVMVMGVVQACS----PEPCLQAVKMT 126 (150)
T ss_dssp SEEEEEEEEEEE-ETT--E---EEEEETTEE--EEEECGGGSCCCSCCCSTTCEEEEEEEEEECS----SSCEEEEEEEE
T ss_pred EEEEEEeEEEEe-CCC--e---EEEECCCce--EEEeeccccCCCCcccCCCCEEEEEEEEEecC----CCceEEEEEee
Confidence 569999999986 445 3 579999985 43321111111012478999999999998653 36678887777
Q ss_pred Eeec
Q 018229 128 DVGM 131 (359)
Q Consensus 128 vLs~ 131 (359)
-||.
T Consensus 127 DLS~ 130 (150)
T 3mxn_B 127 DLSD 130 (150)
T ss_dssp ECCS
T ss_pred eCCC
Confidence 7765
No 92
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=79.37 E-value=9.4 Score=42.37 Aligned_cols=80 Identities=21% Similarity=0.314 Sum_probs=56.9
Q ss_pred CCEEEEEEEEeec--cc--CCCceeEEEEEecCCCCceEEEEEe-CChh--hhccCCCCCcEEEEEeEEeCCCCCCcccE
Q 018229 47 GRQVRVGGWVKTG--RE--QGKGSFAFLEVNDGSCPANLQVIVD-KDVA--DLGQLVPTGTCVYVEGMLKNPPEGTKQKI 119 (359)
Q Consensus 47 gk~V~I~GwV~si--R~--~Gk~kl~Fi~LRDgsg~~~lQVVv~-~~~~--~~~~~L~~esvV~V~G~v~~s~~~~~g~l 119 (359)
...|+|.|.|-.+ |. .|+ .+.-+.|.|.++. |.|..- .+.. .....|+.|++|.|.|.+....- .+++
T Consensus 17 ~~~~~~~g~v~~~~~~~~~~~~-~~~~~~~td~~~~--~~~k~f~~~~~~~~~~~~~~~g~~~~~~g~~~~d~~--~~~~ 91 (1041)
T 3f2b_A 17 ERRVVVQGYVFDAEVSELKSGR-TLLTMKITDYTNS--ILVKMFSRDKEDAELMSGVKKGMWVKVRGSVQNDTF--VRDL 91 (1041)
T ss_dssp EEEEEEEEEEEEEEEEECTTSC-EEEEEEEECSSCE--EEEEEECSSHHHHHHHHTCCTTCEEEEEEEEEEETT--TTEE
T ss_pred cceEEEEEEEEEEEEEEccCCC-EEEEEEEEeCCCC--EEEEEeecccchHHHHhcCCCCCEEEEEEEEEeccC--Ccce
Confidence 4679999999764 42 354 5777789999864 777543 3321 23457999999999999986642 4677
Q ss_pred EEEEeEEEEeec
Q 018229 120 ELRVQKVVDVGM 131 (359)
Q Consensus 120 EL~a~~i~vLs~ 131 (359)
.+.+.+|..+..
T Consensus 92 ~~~~~~~~~~~~ 103 (1041)
T 3f2b_A 92 VIIANDLNEIAA 103 (1041)
T ss_dssp EEEEEEEEEECC
T ss_pred EEEeeeeEEecc
Confidence 888888877654
No 93
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=76.81 E-value=8.4 Score=36.60 Aligned_cols=81 Identities=21% Similarity=0.266 Sum_probs=51.7
Q ss_pred EEEEEEEEee---cccC--CCceeEEEEEe------cCCCC-----ceEEEEEeCChhh-hccCCCCCcEEEEEeEEeCC
Q 018229 49 QVRVGGWVKT---GREQ--GKGSFAFLEVN------DGSCP-----ANLQVIVDKDVAD-LGQLVPTGTCVYVEGMLKNP 111 (359)
Q Consensus 49 ~V~I~GwV~s---iR~~--Gk~kl~Fi~LR------Dgsg~-----~~lQVVv~~~~~~-~~~~L~~esvV~V~G~v~~s 111 (359)
.|.|.|+|-+ +|.. |+ .++-+.|- |..|. .-+.|++..+... ..+ |+.|+.|.|+|.+...
T Consensus 131 ~V~L~GrL~~dPelr~t~~G~-~v~~f~lAv~~~~~d~~Ge~~~~t~~i~vvawg~~Ae~~~~-l~KG~~V~V~GrL~~~ 208 (301)
T 1se8_A 131 EVLVLGNVTRDPEIRYTPAGD-AVLSLSIAVNENYQDRQGQRQEKVHYIDATLWRDLAENMKE-LRKGDPVMIMGRLVNE 208 (301)
T ss_dssp EEEEEEEECSCCEEEECTTCC-EEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHHHHHHTT-CCTTCEEEEEEEEEEE
T ss_pred EEEEEEEECcCCEEEECCCCC-EEEEEEEEEcCceEcCCCCcccccEEEEEEECCHHHHHHHh-cCCCCEEEEEEEEeee
Confidence 4779999976 4533 43 33333331 22121 1388888776543 346 9999999999999764
Q ss_pred CC----C-CcccEEEEEeEEEEeec
Q 018229 112 PE----G-TKQKIELRVQKVVDVGM 131 (359)
Q Consensus 112 ~~----~-~~g~lEL~a~~i~vLs~ 131 (359)
.- + +...+||++++|++|..
T Consensus 209 ~y~dkdG~~r~~~ev~a~~i~~l~~ 233 (301)
T 1se8_A 209 GWTDKDGNKRNSTRVEATRVEALAR 233 (301)
T ss_dssp ECC------CEEEEEEEEEEEECCC
T ss_pred eEECCCCcEEEEEEEEEEEEEEecc
Confidence 31 1 22368999999999864
No 94
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=75.39 E-value=6.1 Score=40.93 Aligned_cols=27 Identities=19% Similarity=0.118 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhCCcEEEccCeeecC
Q 018229 170 NALAYATHTFLQKQGFLYIHTPIITTS 196 (359)
Q Consensus 170 S~I~~~iR~fL~~~gF~EV~TPiLt~~ 196 (359)
.++...+|+.|...||.|+-|+.+++.
T Consensus 394 ~~~~~~ir~~l~~~Gf~Evitysf~s~ 420 (589)
T 3l4g_B 394 NKLTELLRHDMAAAGFTEALTFALCSQ 420 (589)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEECH
T ss_pred HHHHHHHHHHHHHCCCEEEecCcccCH
Confidence 345778999999999999999999864
No 95
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=74.96 E-value=8.1 Score=35.67 Aligned_cols=82 Identities=18% Similarity=0.186 Sum_probs=52.1
Q ss_pred CEEEEEEEEee---cccC--CCceeEEEEEe-cCC-------CCceEEEEEeCChhh-hccCCCCCcEEEEEeEEeCCC-
Q 018229 48 RQVRVGGWVKT---GREQ--GKGSFAFLEVN-DGS-------CPANLQVIVDKDVAD-LGQLVPTGTCVYVEGMLKNPP- 112 (359)
Q Consensus 48 k~V~I~GwV~s---iR~~--Gk~kl~Fi~LR-Dgs-------g~~~lQVVv~~~~~~-~~~~L~~esvV~V~G~v~~s~- 112 (359)
..|.|.|+|-+ +|.. |+ .++-+.|- +.. ...-++|++..+... .. .|+.|+.|.|+|.+....
T Consensus 129 N~v~l~G~l~~dpe~r~t~~G~-~v~~f~lAv~~~~~g~~~~~t~~~~v~~wg~~Ae~~~-~l~KG~~V~V~G~l~~~~~ 206 (264)
T 2fxq_A 129 NQVILMGNLTRDPDLRYTPQGT-AVVRLGLAVNERRRGQEEERTHFLEVQAWRELAEWAS-ELRKGDGLLVIGRLVNDSW 206 (264)
T ss_dssp EEEEEEEEESSCCCCEECTTCC-EEEEEEEEEECCC-------EEEEEEEEEHHHHHHHT-TCCTTCEEEEEEEEEEEEE
T ss_pred EEEEEEEEECCCCEEEECCCCC-EEEEEEEEEcCCcCCCCccccEEEEEEEEChHHHHhh-hcCCCCEEEEEEEEEeeEE
Confidence 36889999976 4533 43 34433331 211 011388888765433 34 899999999999997643
Q ss_pred ---CC-CcccEEEEEeEEEEeec
Q 018229 113 ---EG-TKQKIELRVQKVVDVGM 131 (359)
Q Consensus 113 ---~~-~~g~lEL~a~~i~vLs~ 131 (359)
.+ +...+||.+++|..|..
T Consensus 207 ~~~dG~~~~~~ev~a~~i~~l~~ 229 (264)
T 2fxq_A 207 TSSSGERRFQTRVEALRLERPTR 229 (264)
T ss_dssp ECTTSCEEEEEEEEEEEEECCCC
T ss_pred ECCCCCEEEEEEEEEEEEEECcc
Confidence 12 12358999999988864
No 96
>2kct_A Cytochrome C-type biogenesis protein CCME; solution structure, heme chaperone, cytochrome C biogenesis, OB-fold domain, NESG, PSI-2; NMR {Desulfovibrio vulgaris str}
Probab=73.98 E-value=31 Score=27.31 Aligned_cols=76 Identities=17% Similarity=0.146 Sum_probs=52.1
Q ss_pred CCCCCEEEEEEEEee--c-ccC-CCceeEEEEEecC--CCCceEEEEEeCChhhhccCCCCCcEEEEEeEEeCCCCCCcc
Q 018229 44 GLAGRQVRVGGWVKT--G-REQ-GKGSFAFLEVNDG--SCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTKQ 117 (359)
Q Consensus 44 ~~~gk~V~I~GwV~s--i-R~~-Gk~kl~Fi~LRDg--sg~~~lQVVv~~~~~~~~~~L~~esvV~V~G~v~~s~~~~~g 117 (359)
...|+.++|.|-|.. + |.. +. .+.|. |.|+ .+ ..|.|.+..-.+ ..++-|.-|.++|.+... .|
T Consensus 5 ~~~~~~iRvgG~V~~GSv~r~~~~~-~v~F~-vtD~~~~~-~~v~V~Y~GilP---DlFrEGqgVV~~G~l~~~----~g 74 (94)
T 2kct_A 5 QDKLHTVRLFGTVAADGLTMLDGAP-GVRFR-LEDKDNTS-KTVWVLYKGAVP---DTFKPGVEVIIEGGLAPG----ED 74 (94)
T ss_dssp SCTTCCEEEEEEECSTTCEECTTSS-EEEEE-EECSSCTT-CEEEEEEESCCC---TTCCTTCEEEEEEEECTT----CS
T ss_pred CCCCCeEEEeeEEeCCeEEecCCCC-EEEEE-EEcCCCCC-cEEEEEECCCCC---ccccCCCeEEEEEEEeCC----CC
Confidence 346899999999963 4 432 43 58875 7786 12 469999887543 346789999999999641 11
Q ss_pred cEEEEEeEEEEeecCC
Q 018229 118 KIELRVQKVVDVGMVD 133 (359)
Q Consensus 118 ~lEL~a~~i~vLs~a~ 133 (359)
.+.++ +||.+|+
T Consensus 75 --~F~A~--evLaKh~ 86 (94)
T 2kct_A 75 --TFKAR--TLMTKCP 86 (94)
T ss_dssp --EEEEE--EEEESSC
T ss_pred --EEEEe--EEEEeCC
Confidence 25666 4788886
No 97
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=73.00 E-value=2.9 Score=33.86 Aligned_cols=52 Identities=17% Similarity=0.174 Sum_probs=36.6
Q ss_pred EEEEEeCChhh-hccCCCCCcEEEEEeEEeCCC----CC-CcccEEEEEeEEEEeecC
Q 018229 81 LQVIVDKDVAD-LGQLVPTGTCVYVEGMLKNPP----EG-TKQKIELRVQKVVDVGMV 132 (359)
Q Consensus 81 lQVVv~~~~~~-~~~~L~~esvV~V~G~v~~s~----~~-~~g~lEL~a~~i~vLs~a 132 (359)
++|++..+... ..+.|+.|+.|.|+|.+.... .| ....+||.+++|.+|...
T Consensus 52 ~~v~~wg~~Ae~~~~~l~KG~~V~V~G~l~~~~~~d~dG~~~~~~ev~a~~i~~l~~~ 109 (116)
T 3vdy_A 52 VNCTLWRKTAENTALYCQKGSLVGVSGRIQTRSYENEEGVNVYVTEVLADTVRFMDPK 109 (116)
T ss_dssp EEEEEEHHHHHHHHHHCCTTCEEEEEEEEEEEEEC----CCEEEEEEEEEEEEECC--
T ss_pred EEEEEECHHHHHHHHhCCCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEEccCC
Confidence 88887765433 345589999999999997542 12 234589999999999654
No 98
>1v1q_A Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli} SCOP: b.40.4.3 PDB: 2ccz_A
Probab=68.44 E-value=16 Score=30.78 Aligned_cols=52 Identities=17% Similarity=0.269 Sum_probs=38.4
Q ss_pred EEEEEeCChhhh-ccCCCCCcEEEEEeEEeCCCCC-CcccEEEEEeEEEEeecC
Q 018229 81 LQVIVDKDVADL-GQLVPTGTCVYVEGMLKNPPEG-TKQKIELRVQKVVDVGMV 132 (359)
Q Consensus 81 lQVVv~~~~~~~-~~~L~~esvV~V~G~v~~s~~~-~~g~lEL~a~~i~vLs~a 132 (359)
++||+..+.... .+.|+.|+-|.|+|.+..+... ....+.+++++|+.|+..
T Consensus 67 i~vv~wGk~AE~~~~yl~KGs~V~VeGrL~tr~~k~G~kr~~~~a~~i~~l~~k 120 (134)
T 1v1q_A 67 MPVIVSGHENQAITHSITVGSRITVQGFISCHKAKNGLSKMVLHAEQIELIDSV 120 (134)
T ss_dssp EEEEEESTGGGGGGTTCCTTCEEEEEEEEEEECTTTTSCEEEEEEEEEEETTSC
T ss_pred EEEEEEhHHHHHHHHhcCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEEECcCC
Confidence 888888775443 4569999999999999865421 123577899999998643
No 99
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=68.00 E-value=4 Score=34.11 Aligned_cols=52 Identities=15% Similarity=0.249 Sum_probs=37.3
Q ss_pred EEEEEeCChhh-hccCCCCCcEEEEEeEEeCCC----CC-CcccEEEEEeEEEEeecC
Q 018229 81 LQVIVDKDVAD-LGQLVPTGTCVYVEGMLKNPP----EG-TKQKIELRVQKVVDVGMV 132 (359)
Q Consensus 81 lQVVv~~~~~~-~~~~L~~esvV~V~G~v~~s~----~~-~~g~lEL~a~~i~vLs~a 132 (359)
+.|++..+... ..+.|+.|+.|.|+|.+.... .+ +...+||.+++|..|...
T Consensus 51 ~~v~~wg~~Ae~~~~~l~KG~~V~V~G~L~~~~~~dkdG~~r~~~ev~a~~i~~l~~~ 108 (134)
T 2vw9_A 51 IDARLFGRTAEIANQYLSKGSSVLIEGRLTYESWMDQTGKKNSRHTITADSLQFMDKK 108 (134)
T ss_dssp EEEEEEHHHHHHHHHHCCTTCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEECCCC
T ss_pred EEEEEEcHHHHHHHHhCCCCCEEEEEEEEEeeeEECCCCCEEEEEEEEEEEEEEccCC
Confidence 78887765433 334589999999999997642 12 123589999999999653
No 100
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=66.35 E-value=3 Score=43.01 Aligned_cols=54 Identities=9% Similarity=0.122 Sum_probs=35.0
Q ss_pred Ccccccccc--HHHHHHHHH---cc-c-cceEEEeceeecCCCCCCCccccccccceeecc
Q 018229 301 ARQAFLTVS--GQLQVETYA---CA-V-SNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAF 354 (359)
Q Consensus 301 ~~~~~L~~S--~ql~~e~~~---~~-~-~~Vy~~~p~fRaE~~~t~rHl~EF~mle~E~af 354 (359)
.+...|..| |.|...+-. .+ . -|+|++|+|||.|......|..||+|++..++-
T Consensus 178 ~~~svLRTsLlPgLL~~lr~N~~r~~~pvrLFEIG~VFr~d~~~d~th~~Ef~qLagli~G 238 (534)
T 2du3_A 178 SSTLTLRSHMTTGWFITLSHIADKLPLPIKLFSIDRCFRREQGEDATRLYTYFSASCVLVD 238 (534)
T ss_dssp EEEEEECSSHHHHHHHHHHTTTTTSCSSEEEEEEEEEECCCTTCSSSCCSEEEEEEEEEEC
T ss_pred ccccccCccchhhHHHHHHHHHhCCCCCeeEEEEeeEEecCccccccccceeeEEEEEEEC
Confidence 334566554 444444321 22 2 389999999998764124689999999987754
No 101
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=66.01 E-value=7.1 Score=33.50 Aligned_cols=52 Identities=17% Similarity=0.199 Sum_probs=36.9
Q ss_pred EEEEEeCChhh-hccCCCCCcEEEEEeEEeCCCC----C-CcccEEEEEeEEEEeecC
Q 018229 81 LQVIVDKDVAD-LGQLVPTGTCVYVEGMLKNPPE----G-TKQKIELRVQKVVDVGMV 132 (359)
Q Consensus 81 lQVVv~~~~~~-~~~~L~~esvV~V~G~v~~s~~----~-~~g~lEL~a~~i~vLs~a 132 (359)
+.|++..+... ..+.|+.|+.|.|+|.+..+.- | +...+||.+++|.+|...
T Consensus 65 ~~v~~wg~~Ae~~~~~l~KG~~V~VeGrL~~~~~~dkdG~~r~~~eV~a~~i~~l~~~ 122 (153)
T 1z9f_A 65 FRIVTFGRLAEFARTYLTKGRLVLVEGEMRMRRWETPTGEKRVSPEVVANVVRFMDRK 122 (153)
T ss_dssp EEEEEEHHHHHHHHHHCCTTCEEEEEEEEEEEC-------CCCEEEEEEEEEEECC--
T ss_pred EEEEEECHHHHHHHhhCCCCCEEEEEEEEEeceEECCCCCEEEEEEEEEEEEEEccCC
Confidence 78887765433 3455899999999999986531 2 234589999999999754
No 102
>3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum}
Probab=65.22 E-value=15 Score=29.41 Aligned_cols=46 Identities=11% Similarity=0.239 Sum_probs=31.8
Q ss_pred EEEEEeCChhhhccCCCCCcEEEEEeEEeCCCCCCcccEEEEEeEEE
Q 018229 81 LQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVV 127 (359)
Q Consensus 81 lQVVv~~~~~~~~~~L~~esvV~V~G~v~~s~~~~~g~lEL~a~~i~ 127 (359)
|+||+..+..+....+..|+-|.|+|.+..+.. ....+=++++.++
T Consensus 50 i~vv~wGk~AE~~~~~~kGs~V~VeGrL~trs~-~s~~lvlhi~~~~ 95 (101)
T 3en2_A 50 IEALGAGKMASVLDRIAPGTVLECVGFLARKHR-SSKALVFHISGLE 95 (101)
T ss_dssp EEEEEETHHHHHHTTSCTTCEEEEEEEEEECC-----CEEEEEEEEE
T ss_pred EEEEEEhHHHHHHhhcCCCCEEEEEEEEEeCcC-CCCeeEEEEeccc
Confidence 899998876444445889999999999986652 3445666766654
No 103
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=64.10 E-value=16 Score=31.11 Aligned_cols=59 Identities=15% Similarity=0.099 Sum_probs=41.8
Q ss_pred eeEEEEEecCCCCceEEEEEeCChhhhccCCCCCcEEEEEeEEeCCCCCCcccEEEEEeEEEEeecC
Q 018229 66 SFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMV 132 (359)
Q Consensus 66 kl~Fi~LRDgsg~~~lQVVv~~~~~~~~~~L~~esvV~V~G~v~~s~~~~~g~lEL~a~~i~vLs~a 132 (359)
.++=+.|-|.||. |-+.+..+. ...+..|++|.+.+-...-- .|.++|.+.+.--|.+.
T Consensus 62 ~V~~~lVgDeTG~--I~ftlW~e~---~~~l~~Gd~v~i~na~v~~~---~G~~~L~vgk~g~Ie~~ 120 (145)
T 1wjj_A 62 RIVECLIGDETGC--ILFTARNDQ---VDLMKPGATVILRNSRIDMF---KGTMRLGVDKWGRIEAT 120 (145)
T ss_dssp CCEEEEEECSSCE--EEEEECTTH---HHHTCTTCEEEEEEEEEEEE---TTEEEEEECTTCCBCCC
T ss_pred eEEEEEEEcCCcE--EEEEEecCC---cCcCCCCCEEEEeccEEEeE---CCEEEEEECCCEEEEEC
Confidence 5777889999985 877776653 23478999999987544332 57889998765444443
No 104
>3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A
Probab=61.46 E-value=8.1 Score=31.98 Aligned_cols=52 Identities=17% Similarity=0.250 Sum_probs=36.2
Q ss_pred EEEEEeCC-hhh-hccCCCCCcEEEEEeEEeCCCC----C-CcccEEEEEeEEEEeecC
Q 018229 81 LQVIVDKD-VAD-LGQLVPTGTCVYVEGMLKNPPE----G-TKQKIELRVQKVVDVGMV 132 (359)
Q Consensus 81 lQVVv~~~-~~~-~~~~L~~esvV~V~G~v~~s~~----~-~~g~lEL~a~~i~vLs~a 132 (359)
+.|++-.+ ... ..+.|..|+.|.|+|.+....- | ....+||.+++|.+|+..
T Consensus 69 ~~v~~wg~~~Ae~~~~~l~KG~~V~V~G~L~~~~~~d~dG~~r~~~ev~a~~i~~l~~~ 127 (132)
T 3ull_A 69 HRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYMDKNNVRRQATTIIADNIIFLSDQ 127 (132)
T ss_dssp EEEEECSTTHHHHHHHHCCTTCEEEEEEEEECCCEESSSSEECCCEEEEEEEEECC---
T ss_pred EEEEEEchHHHHHHHhhCCCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEEccCC
Confidence 67777763 433 3456999999999999986531 2 234689999999998764
No 105
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=57.54 E-value=15 Score=29.75 Aligned_cols=47 Identities=28% Similarity=0.264 Sum_probs=33.4
Q ss_pred EEEEEeCChhhh-ccCCCCCcEEEEEeEEeCCCC----C-CcccEEEEEeEEE
Q 018229 81 LQVIVDKDVADL-GQLVPTGTCVYVEGMLKNPPE----G-TKQKIELRVQKVV 127 (359)
Q Consensus 81 lQVVv~~~~~~~-~~~L~~esvV~V~G~v~~s~~----~-~~g~lEL~a~~i~ 127 (359)
+.|++..+..+. .+.|..||-|.|+|.+..+.- | +....||.+++|.
T Consensus 55 i~vv~wgk~AE~~~~yl~KG~~V~VeGrL~~r~y~~kdG~kr~~tEVva~~i~ 107 (108)
T 3koj_A 55 LKVVGWGAVAQELQDRCRLNDEVVLEGRLRINSLLKPDGNREKQTELTVTRVH 107 (108)
T ss_dssp EEEEEETHHHHHHHHHCCTTCEEEEEEEEEEEC--------CCEEEEEEEEEE
T ss_pred EEEEEEhHHHHHHHHhCCCCCEEEEEEEEEeeeEECCCCCEEEEEEEEEEEEE
Confidence 888888765433 355899999999999986531 1 3356889888774
No 106
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=56.95 E-value=52 Score=30.60 Aligned_cols=65 Identities=17% Similarity=0.179 Sum_probs=46.8
Q ss_pred CCCEEEEEEEEeecc----cCCCceeEEEEEecCCCCceEEEEEeCChhhhccCC-CCCcEEEEEeEEeCC
Q 018229 46 AGRQVRVGGWVKTGR----EQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLV-PTGTCVYVEGMLKNP 111 (359)
Q Consensus 46 ~gk~V~I~GwV~siR----~~Gk~kl~Fi~LRDgsg~~~lQVVv~~~~~~~~~~L-~~esvV~V~G~v~~s 111 (359)
.|+.|.|.|.|...+ ..|++-++-+.|.|.+. ..|+|.+-.+.......+ ..||+|.+...-...
T Consensus 14 ~~~~vnvigVV~~~~~p~~s~G~d~~~tl~I~D~S~-~gl~v~iF~~~~~~LP~v~~~GDII~l~~vki~~ 83 (294)
T 1xjv_A 14 GGTIVNVYGVVKFFKPPYLSKGTDYCSVVTIVDQTN-VKLTCLLFSGNYEALPIIYKNGDIVRFHRLKIQV 83 (294)
T ss_dssp SSEEEEEEEEEEEEEEEEECSSSSEEEEEEEECTTC-CEEEEEEEESSGGGSCCCCSTTCEEEEEEEEEEE
T ss_pred CCCeeEEEEEEEEcCCCccCCCCeEEEEEEEEcCCC-CCEEEEEECCChHHCCCCCCCCCEEEEEEEEEEE
Confidence 488899999997653 35655778889999876 368887765433333334 899999999876554
No 107
>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A
Probab=56.73 E-value=97 Score=27.48 Aligned_cols=88 Identities=14% Similarity=0.089 Sum_probs=55.0
Q ss_pred cceeehhhhcCCCCCCCCCCCEEEEEEEEeec----cc-CCC-ceeEEEEEecCCC---CceEEEEEeCChhhhccCC-C
Q 018229 28 DRVLIKSILTRPDGGAGLAGRQVRVGGWVKTG----RE-QGK-GSFAFLEVNDGSC---PANLQVIVDKDVADLGQLV-P 97 (359)
Q Consensus 28 ~r~~i~di~~~~~l~~~~~gk~V~I~GwV~si----R~-~Gk-~kl~Fi~LRDgsg---~~~lQVVv~~~~~~~~~~L-~ 97 (359)
..++++++++ .-..|+.|.|.|-|... |. .|. +=++-+.|-|.+. ...|.|.+-....+..-.+ .
T Consensus 28 ~~~~~r~~l~-----~~~~g~~VNviGVVvd~~~P~~S~rGtkD~~~TltI~D~S~~~~~~gL~v~iF~~~~e~LP~V~~ 102 (187)
T 1qzg_A 28 TFQSIRSSQE-----LQKKNTIVNLFGIVKDFTPSRQSLHGTKDWVTTVYLWDPTCDTSSIGLQIHLFSKQGNDLPVIKQ 102 (187)
T ss_dssp EEECHHHHTS-----CCSSCEEEEEEEEEEEEEEEEECSSTTCCEEEEEEEECTTSCTTSCCEEEEEEESSSSCSCCCCS
T ss_pred eEEEHHHHHh-----hccCCCEEEEEEEEEEccCceecCCCCccEEEEEEEEeCCCCCCCCceEEEEECCChhhCCCCCC
Confidence 3467778762 33468899999999553 33 453 3567788889871 1247776654432222233 7
Q ss_pred CCcEEEEEeEEeCCCCCCcccEEEEE
Q 018229 98 TGTCVYVEGMLKNPPEGTKQKIELRV 123 (359)
Q Consensus 98 ~esvV~V~G~v~~s~~~~~g~lEL~a 123 (359)
.||+|.+.......- .|.+.+..
T Consensus 103 ~GDIIlL~rvkiq~~---~g~~~~v~ 125 (187)
T 1qzg_A 103 VGQPLLLHQITLRSY---RDRTQGLS 125 (187)
T ss_dssp TTCEEEEEEEEEEEE---TTEEEEEE
T ss_pred CCCEEEEEEEEEEEE---CCeEEEEE
Confidence 899999998776654 34444433
No 108
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=54.77 E-value=6.4 Score=40.71 Aligned_cols=45 Identities=11% Similarity=0.211 Sum_probs=31.3
Q ss_pred ccHHHHHHHHHc---cc--cceEEEeceeecCCC-CCCCccccccccceeec
Q 018229 308 VSGQLQVETYAC---AV--SNVYTFGPTFRAEHS-HTSRHLAEFWMVEPEMA 353 (359)
Q Consensus 308 ~S~ql~~e~~~~---~~--~~Vy~~~p~fRaE~~-~t~rHl~EF~mle~E~a 353 (359)
.+|.|..++-.+ +. -|+|++|.|||.+.. + ..|..||.||+.-++
T Consensus 199 LlPGLL~~vr~N~~r~~~pvrlFEiGrVFr~D~~~d-~th~~ef~qLaglv~ 249 (549)
T 2du7_A 199 MTSGWFITLSSLIKKRKLPLKLFSIDRCFRREQRED-RSHLMSYHSASCVVV 249 (549)
T ss_dssp THHHHHHHHHTTTTTSCSSEEEEEEEEECCCCSSCS-SSCCSCEEEEEEEEE
T ss_pred cchhHHHHHHHHHhcCCCCeEEEEEeeEEecCCccc-CcCCCcceEEEEEEE
Confidence 456666664222 22 289999999998764 4 358999999987654
No 109
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=50.97 E-value=31 Score=31.68 Aligned_cols=52 Identities=23% Similarity=0.338 Sum_probs=37.2
Q ss_pred EEEEEeCChhh-hccCCCCCcEEEEEeEEeCCCC---C-CcccEEEEEeEEEEeecC
Q 018229 81 LQVIVDKDVAD-LGQLVPTGTCVYVEGMLKNPPE---G-TKQKIELRVQKVVDVGMV 132 (359)
Q Consensus 81 lQVVv~~~~~~-~~~~L~~esvV~V~G~v~~s~~---~-~~g~lEL~a~~i~vLs~a 132 (359)
+.|++..+... ..+.|+.|+.|.|+|.+..+.- + +...+||.+++|.+|...
T Consensus 54 ~~v~~~g~~Ae~~~~~l~KG~~V~V~G~L~~~~~~~dG~~r~~~ev~a~~i~~l~~~ 110 (264)
T 2fxq_A 54 HRVRLLGRQAEMWGDLLEKGQLIFVEGRLEYRQWEKDGEKKSEVQVRAEFIDPLEGR 110 (264)
T ss_dssp EEEEEETHHHHHHTTTCCTTCEEEEEEEEEEC---------CCEEEEEEEEEECCCC
T ss_pred EEEEEEchHHHHHHHhCCCCCEEEEEEEEEeeeEEeCCEEEEEEEEEEEEEEECcCC
Confidence 78888776533 3456999999999999976431 2 234589999999999653
No 110
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor}
Probab=49.80 E-value=22 Score=31.96 Aligned_cols=48 Identities=29% Similarity=0.372 Sum_probs=34.2
Q ss_pred EEEEEeCChhh-hccCCCCCcEEEEEeEEeCCCC----C-CcccEEEEEeEEEE
Q 018229 81 LQVIVDKDVAD-LGQLVPTGTCVYVEGMLKNPPE----G-TKQKIELRVQKVVD 128 (359)
Q Consensus 81 lQVVv~~~~~~-~~~~L~~esvV~V~G~v~~s~~----~-~~g~lEL~a~~i~v 128 (359)
+.|++-.+..+ ..+.|++|+.|.|+|.|..+.- + +...+||.|++|.+
T Consensus 55 i~VvawgklAE~v~~~L~KG~~V~VeGrL~~rswedkdG~kr~~~eVvA~~Ig~ 108 (199)
T 3eiv_A 55 LTCSVWRQAAENVAESLQRGMRVIVQGRLKQRSYEDREGVKRTVYELDVDEVGA 108 (199)
T ss_dssp EEEEEETHHHHHHHHHCCTTCEEEEEEEEEEEC--------CCEEEEEEEEEEE
T ss_pred EEEEEEhHHHHHHHHhcCCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEec
Confidence 78888776533 3456999999999999986431 1 34568999988764
No 111
>3f1z_A Putative nucleic acid-binding lipoprotein; YP_001337197.1, S genomics, joint center for structural genomics, JCSG; 2.46A {Klebsiella pneumoniae subsp}
Probab=48.59 E-value=24 Score=28.45 Aligned_cols=70 Identities=17% Similarity=0.279 Sum_probs=43.8
Q ss_pred CCCCCCEEEEEEEEeecccCC--CceeEEE-EEecCCCC--ceEEEEEeCChhhhccCCCCCcEEEEEeEEeCCC
Q 018229 43 AGLAGRQVRVGGWVKTGREQG--KGSFAFL-EVNDGSCP--ANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPP 112 (359)
Q Consensus 43 ~~~~gk~V~I~GwV~siR~~G--k~kl~Fi-~LRDgsg~--~~lQVVv~~~~~~~~~~L~~esvV~V~G~v~~s~ 112 (359)
.++.|+-|.++|-|-.+|+.. .+...|| .+||.... +.+..-+......-.+.|..|++-.|.|.|....
T Consensus 45 sdylgkwvkvrgvivdirrksgiagsyyfivtmrdeqnktdkrltfnfgshnsadvealsngsvativgqvhqvq 119 (133)
T 3f1z_A 45 SDYLGKWVKVRGVIVDIRRKSGIAGSYYFIVTMRDEQNKTDKRLTFNFGSHNSADVEALSNGSVATIVGQVHQVQ 119 (133)
T ss_dssp HHHTTCEEEEEEEEEEEEEEECSTTCEEEEEEEECTTCSCSCCEEEEEEGGGHHHHTTCCTTSEEEEEEECCCCC
T ss_pred hhhhcceEEEEEEEEEeeeccCccceEEEEEEeeccccCccceEEEeccCCcchhhHhhcCCceeeEeeeeeeee
Confidence 356799999999999987643 1145565 46776432 1122222221111346799999999999987554
No 112
>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae}
Probab=48.39 E-value=18 Score=31.44 Aligned_cols=52 Identities=23% Similarity=0.272 Sum_probs=36.0
Q ss_pred EEEEEeCC-hhh-hccCCCCCcEEEEEeEEeCCCC----C-CcccEEEEE----eEEEEeecC
Q 018229 81 LQVIVDKD-VAD-LGQLVPTGTCVYVEGMLKNPPE----G-TKQKIELRV----QKVVDVGMV 132 (359)
Q Consensus 81 lQVVv~~~-~~~-~~~~L~~esvV~V~G~v~~s~~----~-~~g~lEL~a----~~i~vLs~a 132 (359)
+.|++..+ ... ..+.|+.|+.|.|+|.+..+.- | +...+||.+ .+|.+|+..
T Consensus 73 i~vv~wg~~lAe~~~~~l~KG~~V~VeGrL~~r~~~dkdG~~r~~~eIva~~~~~~i~~L~~k 135 (169)
T 3lgj_A 73 HSVVVFNPHFAKIALQYLHKGSKVYIEGKLQTRKWQDKNGHDRYTTEIVLPQYKGELHLLDAK 135 (169)
T ss_dssp EEEEECCHHHHHHHHHHCCTTCEEEEEEEEEEECC--------CEEEEEECTTCCEEEEECC-
T ss_pred EEEEEeCHHHHHHHHHhCCCCCEEEEEEEEEEEEEECCCCCEEEEEEEEEEeccCcEEEccCC
Confidence 78888776 433 3455999999999999986531 2 234688887 588888653
No 113
>1fyj_A Multifunctional aminoacyl-tRNA synthetase; helix-turn-helix, ligase; NMR {Homo sapiens} SCOP: a.16.1.3
Probab=47.50 E-value=52 Score=23.36 Aligned_cols=43 Identities=26% Similarity=0.335 Sum_probs=36.7
Q ss_pred HHHHHHHHhhhHHHhhhcccchhhhhhhhHHHHHHHHHHHHHH
Q 018229 234 AAKLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKL 276 (359)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (359)
+....+.+.+..|..||.+++.-+.+.++|..|..-+.....+
T Consensus 4 ~l~~~v~~qG~~VR~LKa~kA~k~~i~~aV~~Ll~lK~~~~~~ 46 (57)
T 1fyj_A 4 VLYNRVAVQGDVVRELKAKKAPKEDVDAAVKQLLSLKAEYKEK 46 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788999999999999999999999999998777776666
No 114
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=46.87 E-value=6.7 Score=33.16 Aligned_cols=53 Identities=21% Similarity=0.312 Sum_probs=36.9
Q ss_pred eEEEEEeCChhh-hccCCCCCcEEEEEeEEeCCC----CC-CcccEEE---EEeEEEEeecC
Q 018229 80 NLQVIVDKDVAD-LGQLVPTGTCVYVEGMLKNPP----EG-TKQKIEL---RVQKVVDVGMV 132 (359)
Q Consensus 80 ~lQVVv~~~~~~-~~~~L~~esvV~V~G~v~~s~----~~-~~g~lEL---~a~~i~vLs~a 132 (359)
-+.|++..+..+ ..+.|+.|+.|.|+|.+.... .+ +...+|| ++++|.+|...
T Consensus 54 ~~~v~~wg~~Ae~~~~~l~KG~~V~V~G~L~~~~~~d~dG~~r~~~ei~a~va~~i~~l~~~ 115 (145)
T 1qvc_A 54 WHRVVLFGKLAEVASEYLRKGSQVYIEGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGR 115 (145)
T ss_dssp EEEEEEETHHHHHHHHHCCTTCEEEEEEEEEEEEECSSSSCEEEEEEEECTTCEEEECCCCS
T ss_pred EEEEEEehHHHHHHHHhcCCCCEEEEEEEEEeeEEECCCCcEEEEEEEeeeEeCEEEEccCC
Confidence 388888876533 345589999999999997643 12 1234688 78888888643
No 115
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=45.70 E-value=11 Score=39.66 Aligned_cols=47 Identities=13% Similarity=0.212 Sum_probs=31.6
Q ss_pred cccHHHHHHHH--H-ccc--cceEEEeceeecCCCCCCCccccccccceeec
Q 018229 307 TVSGQLQVETY--A-CAV--SNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMA 353 (359)
Q Consensus 307 ~~S~ql~~e~~--~-~~~--~~Vy~~~p~fRaE~~~t~rHl~EF~mle~E~a 353 (359)
+.+|.|..++- . ... -|+|++|.|||.+..-...|..||.||+.=++
T Consensus 205 sLlPGLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~ 256 (648)
T 2odr_B 205 HMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIA 256 (648)
T ss_dssp CTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEE
T ss_pred cchhhHHHHHHHHHhcCCCCeEEEEEeeEEecCccccccCCCcceEEEEEEE
Confidence 34566666642 2 222 38999999999865412468999999987543
No 116
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=45.13 E-value=11 Score=40.41 Aligned_cols=80 Identities=18% Similarity=0.187 Sum_probs=52.5
Q ss_pred CCCCEEEEEEEEeeccc--CCCceeEEEEEecCCCCceEEEEEeCChhhhccCCCC--CcEEEEEeEEeCCCCCCcccEE
Q 018229 45 LAGRQVRVGGWVKTGRE--QGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPT--GTCVYVEGMLKNPPEGTKQKIE 120 (359)
Q Consensus 45 ~~gk~V~I~GwV~siR~--~Gk~kl~Fi~LRDgsg~~~lQVVv~~~~~~~~~~L~~--esvV~V~G~v~~s~~~~~g~lE 120 (359)
..|+.|+|.|.|.+... .|+.+..=+.+.|++|. +++++-.... ..+.++. |..+.|.|+|...+ ..+.++
T Consensus 163 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~f~~~~-~~~~~~~~~g~~~~~~G~~~~~~--~~~~~~ 237 (780)
T 1gm5_A 163 LPGEKVTTQGKIVSVETKKFQNMNILTAVLSDGLVH--VPLKWFNQDY-LQTYLKQLTGKEVFVTGTVKSNA--YTGQYE 237 (780)
T ss_dssp CSSCCCEEEECCCCCEEEECSSCEEEEEEECCSSCC--EEEEECSCCT-THHHHHTTCSSCEEEEEEECSCC--TTSSCC
T ss_pred CCCCEEEEEEEEEEEEeecCCCCeEEEEEEEECCce--EEEEEECcHH-HHhhCccCCCCEEEEEEEEEEcc--CCCcEE
Confidence 45889999999987632 23214555778899986 9998765321 1234667 99999999997631 023455
Q ss_pred EEEeEEEEe
Q 018229 121 LRVQKVVDV 129 (359)
Q Consensus 121 L~a~~i~vL 129 (359)
+.--++.+.
T Consensus 238 ~~~p~~~~~ 246 (780)
T 1gm5_A 238 IHNAEVTPK 246 (780)
T ss_dssp EEEEEEECS
T ss_pred EEcCEEeec
Confidence 655555543
No 117
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=45.11 E-value=11 Score=39.65 Aligned_cols=50 Identities=14% Similarity=0.204 Sum_probs=33.0
Q ss_pred cccc--ccHHHHHHHH--H-ccc--cceEEEeceeecCCCCCCCccccccccceeec
Q 018229 304 AFLT--VSGQLQVETY--A-CAV--SNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMA 353 (359)
Q Consensus 304 ~~L~--~S~ql~~e~~--~-~~~--~~Vy~~~p~fRaE~~~t~rHl~EF~mle~E~a 353 (359)
..|. .+|.|..++- . ... -|+|++|.|||.+..-...|..||.||+.=++
T Consensus 200 sVLRTSLlPGLL~~lr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~ 256 (665)
T 2odr_A 200 LTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIA 256 (665)
T ss_dssp EEECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEE
T ss_pred CcccccchhhHHHHHHHHHhcCCCCeEEEEEeeEEecCccccccCCCcceEEEEEEE
Confidence 3444 4566666642 2 222 38999999999865412468999999987543
No 118
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=44.82 E-value=12 Score=39.72 Aligned_cols=50 Identities=14% Similarity=0.204 Sum_probs=33.0
Q ss_pred cccc--ccHHHHHHHH--H-ccc--cceEEEeceeecCCCCCCCccccccccceeec
Q 018229 304 AFLT--VSGQLQVETY--A-CAV--SNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMA 353 (359)
Q Consensus 304 ~~L~--~S~ql~~e~~--~-~~~--~~Vy~~~p~fRaE~~~t~rHl~EF~mle~E~a 353 (359)
..|. .+|.|..++- . ... -|+|++|.|||.+..-...|..||.||+.=++
T Consensus 200 sVLRTSLlPGLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~ 256 (685)
T 2odr_D 200 LTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIA 256 (685)
T ss_dssp EEECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEE
T ss_pred CcccccchhhHHHHHHHHHhCCCCCeEEEEeccEEecCccccccCCCcceEEEEEEE
Confidence 3454 4566666642 2 222 38999999999865412468999999987543
No 119
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=44.78 E-value=50 Score=24.42 Aligned_cols=49 Identities=18% Similarity=0.237 Sum_probs=34.4
Q ss_pred CCCEEEEEEEEeecccCCCceeEEEEEecCCCCceEEEEEeCChhh--hccCCCCCcEEEEE
Q 018229 46 AGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD--LGQLVPTGTCVYVE 105 (359)
Q Consensus 46 ~gk~V~I~GwV~siR~~Gk~kl~Fi~LRDgsg~~~lQVVv~~~~~~--~~~~L~~esvV~V~ 105 (359)
.|+. +.|.|.++...| +|++|.++ +..++..+... +.+.++.||.|.|.
T Consensus 5 ~G~i--v~G~V~~v~~~G----~fV~l~~~-----~~Gllh~sel~~~~~~~~~~Gd~V~v~ 55 (80)
T 2k52_A 5 PGKF--YKGVVTRIEKYG----AFINLNEQ-----VRGLLRPRDMISLRLENLNVGDEIIVQ 55 (80)
T ss_dssp TTCE--EEEEEEEEETTE----EEEEEETT-----EEEEECGGGCSSCCGGGCCTTCEEEEE
T ss_pred CCCE--EEEEEEEEeCCE----EEEEECCC-----CEEEEEHHHCCcccceeeCCCCEEEEE
Confidence 4554 789999999988 79999763 66677655321 11358899998765
No 120
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=44.72 E-value=31 Score=27.96 Aligned_cols=51 Identities=22% Similarity=0.407 Sum_probs=36.0
Q ss_pred EEEEEeC-Chhh-hccCCCCCcEEEEEeEEeCCC------CC-CcccEEEEEe----EEEEeec
Q 018229 81 LQVIVDK-DVAD-LGQLVPTGTCVYVEGMLKNPP------EG-TKQKIELRVQ----KVVDVGM 131 (359)
Q Consensus 81 lQVVv~~-~~~~-~~~~L~~esvV~V~G~v~~s~------~~-~~g~lEL~a~----~i~vLs~ 131 (359)
+.|++-. +... ..+.|+.|+.|.|+|.+.... .+ ....+||.++ +|..|+.
T Consensus 56 ~~v~~wg~~~Ae~~~~~l~KG~~V~V~G~L~~~~~~d~~~dG~~~~~~ev~a~~~g~~i~~l~~ 119 (124)
T 3ulp_A 56 HRIVVYDQNIVDLIDKYLRKGRRVYVQGSLHTRKWHTNDMNSQPKQITEIILSYNKGDLIFLDD 119 (124)
T ss_dssp EEEEECCHHHHHHHHHHCCTTCEEEEEEEEEEEEECC----CCCEEEEEEEECTTTCEEEECC-
T ss_pred EEEEEEEchHHHHHHhhcCCCCEEEEEEEEEeEEEeCCCCCCCEEEEEEEEEEcCCCcEEEecC
Confidence 8888877 4433 345589999999999997432 22 2346899997 8888865
No 121
>2b29_A Replication protein A 70 kDa DNA-binding subunit; 1.60A {Homo sapiens} SCOP: b.40.4.3 PDB: 2b3g_A 1ewi_A
Probab=44.24 E-value=65 Score=26.41 Aligned_cols=62 Identities=10% Similarity=0.109 Sum_probs=44.3
Q ss_pred eEEEEEecCCCCceEEE-EEeCChhhh--ccCCCCCcEEEEEeEEeCCCCCCcccEEEEEeEEEEeecC
Q 018229 67 FAFLEVNDGSCPANLQV-IVDKDVADL--GQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMV 132 (359)
Q Consensus 67 l~Fi~LRDgsg~~~lQV-Vv~~~~~~~--~~~L~~esvV~V~G~v~~s~~~~~g~lEL~a~~i~vLs~a 132 (359)
-.=+.|.||.. .+|. ++....... ...|..+++|.|.=.....- +.+.--|.+.+++||.++
T Consensus 44 RyRl~lSDG~~--~~~~~mLatqln~~v~~g~l~~~sIirl~~y~~~~v--~~~k~vliIl~levl~~~ 108 (123)
T 2b29_A 44 RYRLLMSDGLN--TLSSFMLATQLNPLVEEEQLSSNCVCQIHRFIVNTL--KDGRRVVILMELEVLKSA 108 (123)
T ss_dssp EEEEEEECSSE--EEEEEEECGGGHHHHHTTSSCTTCEEEEEEEEEEEC--SSSCEEEEEEEEEEEECS
T ss_pred eEEEEEECcch--heeeehhHHHHHHHHhcCCccCCCEEEEEEEEEEEe--cCCcEEEEEEeeEEeecc
Confidence 44578999875 5998 887665333 34589999999987654432 114567889999999873
No 122
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=43.80 E-value=26 Score=33.22 Aligned_cols=52 Identities=21% Similarity=0.360 Sum_probs=37.7
Q ss_pred EEEEEeCChhh-hccC-CCCCcEEEEEeEEeCCC----CC-CcccEEEEEeEEEEeecC
Q 018229 81 LQVIVDKDVAD-LGQL-VPTGTCVYVEGMLKNPP----EG-TKQKIELRVQKVVDVGMV 132 (359)
Q Consensus 81 lQVVv~~~~~~-~~~~-L~~esvV~V~G~v~~s~----~~-~~g~lEL~a~~i~vLs~a 132 (359)
+.|++..+..+ ..+. |+.|+.|.|+|.+..+. .+ +...+||++++|.+|...
T Consensus 54 i~vv~~g~~Ae~~~~~~l~KG~~V~VeG~L~~r~~~dkdG~~r~~~ev~a~~i~~l~~~ 112 (301)
T 1se8_A 54 HRVSILGKPAEWQAERNLKGGDAVVVEGTLEYRQWEAPEGGKRSAVNVKALRMEQLGTQ 112 (301)
T ss_dssp EEEEEESHHHHHHHHTCCCTTCEEEEEEEEEEEEEC-----CEEEEEEEEEEEEECSSC
T ss_pred EEEEEEcHHHHHHHhhCCCCCCEEEEEEEEEeeeEECCCCCEEEEEEEEEeEEEEeecc
Confidence 78888776533 3566 89999999999997532 12 234589999999998653
No 123
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=43.58 E-value=12 Score=39.59 Aligned_cols=47 Identities=13% Similarity=0.212 Sum_probs=31.5
Q ss_pred cccHHHHHHHH--H-ccc--cceEEEeceeecCCCCCCCccccccccceeec
Q 018229 307 TVSGQLQVETY--A-CAV--SNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMA 353 (359)
Q Consensus 307 ~~S~ql~~e~~--~-~~~--~~Vy~~~p~fRaE~~~t~rHl~EF~mle~E~a 353 (359)
+.+|.|..++- . ... -|+|++|.|||.+..-...|..||.||+.=++
T Consensus 205 SLlPGLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~EfhqLeGlv~ 256 (701)
T 2odr_C 205 HMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIA 256 (701)
T ss_dssp CTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEE
T ss_pred cchhhHHHHHHHHHhCCCCCeEEEEEeeEEccCccccccCCCcceEEEEEEE
Confidence 34566666642 2 222 38999999999865412468999999987543
No 124
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=40.13 E-value=67 Score=26.24 Aligned_cols=49 Identities=22% Similarity=0.296 Sum_probs=34.9
Q ss_pred CCCEEEEEEEEeecccCCCceeEEEEEecCCCCceEEEEEeCChhh------hccCCCCCcEEEEE
Q 018229 46 AGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD------LGQLVPTGTCVYVE 105 (359)
Q Consensus 46 ~gk~V~I~GwV~siR~~Gk~kl~Fi~LRDgsg~~~lQVVv~~~~~~------~~~~L~~esvV~V~ 105 (359)
+|+ .+.|.|.++...| +|++|-++ ++.++..+... ....++.||.|.|.
T Consensus 7 vG~--iv~G~V~~i~~~G----~FV~l~~~-----~~Glihisel~~~~~~~~~~~~~vGd~V~vk 61 (130)
T 2k4k_A 7 VGS--VYTGKVTGLQAYG----AFVALDEE-----TQGLVHISEVTHGFVKDINEHLSVGDEVQVK 61 (130)
T ss_dssp TTC--EEEEEEEEEETTE----EEEEEETT-----EEEEEEGGGTSSSCCSCGGGTCCTTCEEEEE
T ss_pred CCC--EEEEEEEEEeCCe----EEEEECCC-----cEEEEEHHHCCcccccCccccCCCCCEEEEE
Confidence 455 3689999998887 89999653 77777654321 12458899998765
No 125
>4gs3_A Single-stranded DNA-binding protein; primosome, oligonucleotide/oligosaccharide binding domain, D binding protein; 1.09A {Thermoanaerobacter tengcongensis}
Probab=38.72 E-value=89 Score=25.16 Aligned_cols=49 Identities=22% Similarity=0.302 Sum_probs=32.4
Q ss_pred EEEEEeCChhhhccCCCCCcEEEEEeEEeC-C-C---CC-CcccEEEEEeEEEEee
Q 018229 81 LQVIVDKDVADLGQLVPTGTCVYVEGMLKN-P-P---EG-TKQKIELRVQKVVDVG 130 (359)
Q Consensus 81 lQVVv~~~~~~~~~~L~~esvV~V~G~v~~-s-~---~~-~~g~lEL~a~~i~vLs 130 (359)
|-|++.....+.. .+..|+-|.|+|.++. . - .+ +.--+||.|++|+.|.
T Consensus 52 i~ivvw~klAe~~-~~~kG~~v~v~G~lrsy~~~~~~dG~~R~v~eV~a~~i~fld 106 (107)
T 4gs3_A 52 LPITISNRLFEGM-NLEVGTRVKIEGQLRSYNRKSPEEGKNKLILTVFARDISVVP 106 (107)
T ss_dssp EEEEEEGGGSTTC-CCCTTCEEEEEEEEEEEECC--------EEEEEEEEEEEEEC
T ss_pred EEEEEEhHHhhHH-hhcCCCEEEEEEEEEecceEECCCCCEEEEEEEEEEEEEEcc
Confidence 7777766543322 2568999999999963 2 1 12 2345899999999875
No 126
>2djv_A Methionyl-tRNA synthetase; EC 6.1.1.10, WHEP-TRS domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.27 E-value=80 Score=24.07 Aligned_cols=52 Identities=29% Similarity=0.390 Sum_probs=42.1
Q ss_pred CChhhHHHHHHHHHHhhhHHHhhhcccchhhhhhhhHHHHHHHHHHHHHHHh
Q 018229 227 PSEADIEAAKLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEE 278 (359)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (359)
+......+....+.+.+..|..||.+.++-+.+.++|..|..-+.....++.
T Consensus 10 ~~~~~~~~l~~~V~~QG~~VR~LKa~kA~k~~i~~aV~~Ll~LKa~l~~~tg 61 (79)
T 2djv_A 10 AKPQQIQALMDEVTKQGNIVRELKAQKADKNEVAAEVAKLLDLKKQLAVAEG 61 (79)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhhccCcHhHhhHHHHHHHHHHHHHHHhcC
Confidence 3445566778899999999999999999999999999999877766665543
No 127
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=36.77 E-value=23 Score=30.64 Aligned_cols=46 Identities=26% Similarity=0.486 Sum_probs=31.4
Q ss_pred EEEEEeCChhh-hccCCCCCcEEEEEeEEeCCC----CC-CcccEEEEEeEE
Q 018229 81 LQVIVDKDVAD-LGQLVPTGTCVYVEGMLKNPP----EG-TKQKIELRVQKV 126 (359)
Q Consensus 81 lQVVv~~~~~~-~~~~L~~esvV~V~G~v~~s~----~~-~~g~lEL~a~~i 126 (359)
+.|++..+... ..+.|++|+.|.|+|.+..+. .+ +...+||.+++|
T Consensus 55 ~~v~~wg~~Ae~~~~~l~KG~~V~VeGrL~~~~~~dkdG~~r~~~ev~a~~v 106 (168)
T 3afp_A 55 LRCNIWREAAENVAESLTRGARVIVTGRLKQRSFETREGEKRTVVEVEVDEI 106 (168)
T ss_dssp EEEEEEHHHHHHHHHHCCTTCEEEEEEEEEEEEEC-CCSCCEEEEEEEEEEE
T ss_pred EEEEEehHHHHHHHHhCCCCCEEEEEEEEEeeeEECCCCcEEEEEEEEEEEe
Confidence 88888765432 345699999999999997643 12 223477777654
No 128
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=31.50 E-value=72 Score=25.32 Aligned_cols=50 Identities=26% Similarity=0.433 Sum_probs=34.6
Q ss_pred CCCCEEEEEEEEeecccCCCceeEEEEEecCCCCceEEEEEeCChhh-------hccCCCCCcEEEEE
Q 018229 45 LAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD-------LGQLVPTGTCVYVE 105 (359)
Q Consensus 45 ~~gk~V~I~GwV~siR~~Gk~kl~Fi~LRDgsg~~~lQVVv~~~~~~-------~~~~L~~esvV~V~ 105 (359)
.+|+. +.|.|.++...| +|++|.++ +..++..+... ....++.||.|.|.
T Consensus 29 ~~G~~--~~G~V~~v~~~G----~FV~l~~~-----~~Glvhisel~~~~~~~~~~~~~~vGd~V~vk 85 (115)
T 2khi_A 29 PEGTK--LTGRVTNLTDYG----CFVEIEEG-----VEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVM 85 (115)
T ss_dssp CSSCE--EEEEEEEEETTE----EEEECSTT-----CEEEEETTSSSCSSTTCSSTTTCCTTCEEEEE
T ss_pred CCCCE--EEEEEEEEECCE----EEEEECCC-----CEEEEEHHHCCccccccCcccEECCCCEEEEE
Confidence 45664 789999999988 79999542 66677654321 12347889988775
No 129
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.05 E-value=1e+02 Score=23.91 Aligned_cols=53 Identities=19% Similarity=0.218 Sum_probs=34.3
Q ss_pred CCCCEEEEEEEEeecccCCCceeEEEEEecCCCCceEEEEEeCChh-h------hccCCCCCcEEEEE
Q 018229 45 LAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA-D------LGQLVPTGTCVYVE 105 (359)
Q Consensus 45 ~~gk~V~I~GwV~siR~~Gk~kl~Fi~LRDgsg~~~lQVVv~~~~~-~------~~~~L~~esvV~V~ 105 (359)
.+|+. +.|.|.++...| +|++|.+... .+..++..+.. . ..+.++.||.|.|.
T Consensus 11 ~vG~i--~~G~V~~v~~fG----~FV~l~~~~~--~~~Glvhisel~~~~~~~~~~~~~~~Gd~V~Vk 70 (103)
T 2eqs_A 11 TIGDI--YNGKVTSIMQFG----CFVQLEGLRK--RWEGLVHISELRREGRVANVADVVSKGQRVKVK 70 (103)
T ss_dssp CTTCE--EEEEEEEECSSC----EEEEECSSSS--CCEEEECGGGTSSSSCCCCHHHHCCTTCEEEEE
T ss_pred CCCCE--EEEEEEEEeccE----EEEEEcCCCC--CeEEEEEHHHCCCCcccCCcccEeCCCCEEEEE
Confidence 35554 679999999998 7999975211 15666655432 1 11237888888765
No 130
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=28.14 E-value=52 Score=25.87 Aligned_cols=50 Identities=26% Similarity=0.308 Sum_probs=32.3
Q ss_pred CCCCEEEEEEEEeecccCCCceeEEEEEecCCCCceEEEEEeCChh------hhccCCCCCcEEEEE
Q 018229 45 LAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA------DLGQLVPTGTCVYVE 105 (359)
Q Consensus 45 ~~gk~V~I~GwV~siR~~Gk~kl~Fi~LRDgsg~~~lQVVv~~~~~------~~~~~L~~esvV~V~ 105 (359)
..|+. +.|.|.++...| +|++|-++ +..++..+.. +..+.++.||.|.|.
T Consensus 30 ~~G~i--v~G~V~~v~~~G----~fV~l~~~-----~~Gll~~sel~~~~~~~~~~~~~vGd~V~v~ 85 (109)
T 2khj_A 30 KKGAI--VTGKVTAVDAKG----ATVELADG-----VEGYLRASEASRDRVEDATLVLSVGDEVEAK 85 (109)
T ss_dssp CSSSE--EEEEEEEECSSC----EEEECSTT-----CBCCBCTTCCCSSSSSSGGGSCCTTCEEEEE
T ss_pred CCCCE--EEEEEEEEECCe----EEEEECCC-----CEEEEEHHHcCcccccChhhccCCCCEEEEE
Confidence 45665 779999999888 79999653 3334443321 112357889988765
No 131
>1d2d_A TRNA synthetase, tRNA ligase; tRNA synthetase (ligase), protein transcription; NMR {Cricetulus griseus} SCOP: a.16.1.3 PDB: 1r1b_A
Probab=28.03 E-value=43 Score=24.23 Aligned_cols=39 Identities=31% Similarity=0.406 Sum_probs=31.5
Q ss_pred HHHHhhhHHHhhhcccchhhhhhhhHHHHHHHHHHHHHH
Q 018229 238 VIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKL 276 (359)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (359)
.+++-+..|..||+++++-+.+.++|+.|..-+.....+
T Consensus 5 ~V~~QG~~VR~LKa~kA~k~~i~~aV~~Ll~LK~~~~~~ 43 (59)
T 1d2d_A 5 KIAAQGEVVRKLKAEKAPKAKVTEAVECLLSLKAEYKEK 43 (59)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999987555544433
No 132
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=27.66 E-value=1.1e+02 Score=26.81 Aligned_cols=51 Identities=16% Similarity=0.106 Sum_probs=31.8
Q ss_pred CCCEEEEEEEEeecccCCCceeEEEEEecCCCCceEEEEEeCChhh--h----ccCCCCCcEEEEE
Q 018229 46 AGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD--L----GQLVPTGTCVYVE 105 (359)
Q Consensus 46 ~gk~V~I~GwV~siR~~Gk~kl~Fi~LRDgsg~~~lQVVv~~~~~~--~----~~~L~~esvV~V~ 105 (359)
+|+. +.|.|.++...| +|++|.+..+ +.-++.-+... + .+.++.|+.|.|.
T Consensus 15 ~G~i--v~G~V~~I~~fG----aFV~L~e~~g---~eGLvhiSels~~~v~~~~~~~~vGd~V~Vk 71 (182)
T 1kl9_A 15 VEDV--VMVNVRSIAEMG----AYVSLLEYNN---IEGMILLSELSRRRIRSINKLIRIGRNECVV 71 (182)
T ss_dssp TTCE--EEEEEEEECSSE----EEEEETTTTT---EEEEEEGGGC------------CTTCEEEEE
T ss_pred CCCE--EEEEEEEEeccE----EEEEEccCCC---cEEEEEHHHCCCcccCCHHHhcCCCCEEEEE
Confidence 4554 689999999998 8999964433 67777654321 1 2336677776654
No 133
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=27.37 E-value=1.4e+02 Score=27.22 Aligned_cols=21 Identities=29% Similarity=0.284 Sum_probs=16.9
Q ss_pred hccCCCCCcEEEEEeEEeCCC
Q 018229 92 LGQLVPTGTCVYVEGMLKNPP 112 (359)
Q Consensus 92 ~~~~L~~esvV~V~G~v~~s~ 112 (359)
+...+++||-|.|+|++...+
T Consensus 221 Lvd~~~PGDrV~vtGI~~~~~ 241 (268)
T 2vl6_A 221 LVDSARPGDRVKVTGILDIKQ 241 (268)
T ss_dssp GTTSSCTTCEEEEEEEEEEEC
T ss_pred ccCcccCCCEEEEEEEEEEee
Confidence 345678999999999997654
No 134
>1eqq_A Single stranded DNA binding protein; beta barrel, protein-DNA complex, replication/RNA complex; HET: 5MU; 3.20A {Escherichia coli} SCOP: b.40.4.3
Probab=27.25 E-value=17 Score=31.88 Aligned_cols=31 Identities=26% Similarity=0.507 Sum_probs=23.3
Q ss_pred EEEEEeCChhh-hccCCCCCcEEEEEeEEeCC
Q 018229 81 LQVIVDKDVAD-LGQLVPTGTCVYVEGMLKNP 111 (359)
Q Consensus 81 lQVVv~~~~~~-~~~~L~~esvV~V~G~v~~s 111 (359)
+.|++..+... ..+.|+.|+.|.|+|.+..+
T Consensus 56 i~vv~wg~~Ae~~~~~l~KG~~V~VeGrL~~r 87 (178)
T 1eqq_A 56 HRVVLFGKLAEVASEYLRKGSQVYIEGQLRTR 87 (178)
T ss_dssp EEEEECHHHHHHHHHHCCTTCEEEECCEEEEE
T ss_pred EEEEEccHHHHHHHHhcCCCCEEEEEEEEEee
Confidence 77777765433 34558999999999999764
No 135
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=26.97 E-value=1.1e+02 Score=26.40 Aligned_cols=51 Identities=14% Similarity=0.087 Sum_probs=32.4
Q ss_pred CCCEEEEEEEEeecccCCCceeEEEEEecCCCCceEEEEEeCChhh------hccCCCCCcEEEEE
Q 018229 46 AGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD------LGQLVPTGTCVYVE 105 (359)
Q Consensus 46 ~gk~V~I~GwV~siR~~Gk~kl~Fi~LRDgsg~~~lQVVv~~~~~~------~~~~L~~esvV~V~ 105 (359)
+|+. +.|.|.++...| +|++|-+..+ +..++.-+... ..+.++.|+.|.|.
T Consensus 15 ~G~i--v~G~V~~i~~fG----aFV~L~e~~g---veGLvhiSels~~~v~~~~~~~~vGd~V~vk 71 (175)
T 2a19_A 15 IDDI--VMVNVQQIAEMG----AYVKLLEYDN---IEGMILLSELSRRRIRSIQKLIRVGKNDVAV 71 (175)
T ss_dssp TTCE--EEEEEEEEETTE----EEEEETTTTT---CEEEEECC--------CCCCCCCTTSEEEEE
T ss_pred CCCE--EEEEEEEEecce----EEEEEcCCCC---cEEEEEHHHcCCcccCCHHHcCCCCCEEEEE
Confidence 4554 679999999998 7999943333 56666654321 12346777777664
No 136
>3pgz_A Single-stranded DNA-binding protein; ssgcid, single-strand binding protein, structural genomics center for infectious disease; 2.10A {Bartonella henselae}
Probab=26.35 E-value=38 Score=30.22 Aligned_cols=51 Identities=18% Similarity=0.402 Sum_probs=34.8
Q ss_pred EEEEEeCC-hhhh-ccCCCCCcEEEEEeEEeCCC----CC-CcccEEEEEe----EEEEeec
Q 018229 81 LQVIVDKD-VADL-GQLVPTGTCVYVEGMLKNPP----EG-TKQKIELRVQ----KVVDVGM 131 (359)
Q Consensus 81 lQVVv~~~-~~~~-~~~L~~esvV~V~G~v~~s~----~~-~~g~lEL~a~----~i~vLs~ 131 (359)
+.|++..+ ..+. .+.|++|+.|.|+|.+..+. .+ +...+||.|+ +|.+|..
T Consensus 76 i~Vvawgk~lAe~~~~yL~KGs~V~VeGrL~trswedkdG~kr~~tEVva~~~~~~i~fL~s 137 (193)
T 3pgz_A 76 HNIVIFNENLVKVVEQYLKKGSKIYIEGQLQTRKWQDQNGNDRYTTEIVLQKYRGELQMLDG 137 (193)
T ss_dssp EEEEECCHHHHHHHHHHCCTTCEEEEEEEEEEEEEECTTSCEEEEEEEEECTTCCEEEECC-
T ss_pred EEEEEECHHHHHHHHhhcCCCCEEEEEEEEEEEEeECCCCCEEEEEEEEEEeccCceEECcC
Confidence 78888764 3333 34589999999999997542 12 2345788888 5777754
No 137
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=25.58 E-value=85 Score=24.97 Aligned_cols=50 Identities=14% Similarity=0.208 Sum_probs=33.5
Q ss_pred CCCEEEEEEEEeecccCCCceeEEEEEecCCCCceEEEEEeCChh-hh------ccCCCCCcEEEEE
Q 018229 46 AGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA-DL------GQLVPTGTCVYVE 105 (359)
Q Consensus 46 ~gk~V~I~GwV~siR~~Gk~kl~Fi~LRDgsg~~~lQVVv~~~~~-~~------~~~L~~esvV~V~ 105 (359)
+|+. +.|.|.++...| +|++|..+ + +..++..+.. +| .+.++.||.|.|.
T Consensus 21 ~G~i--~~G~V~~v~~fG----~fV~l~~~-~---~~~l~~~~~~~~~~~~~~~~~~~~~Gd~V~vk 77 (119)
T 1wi5_A 21 PGML--LTGTVSSLEDHG----YLVDIGVD-G---TRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCI 77 (119)
T ss_dssp TTCE--EEEEEEEECSSE----EEEECCCS-S---CEEEEEHHHHHHHHHHHSSSCCCCTTCEEEEE
T ss_pred CCCE--EEEEEEEEeCce----EEEEECCC-C---eEEEEEEecccccccccCccCEeCCCCEEEEE
Confidence 4554 679999999998 79999622 2 3444444331 12 2458999999875
No 138
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.14 E-value=72 Score=25.71 Aligned_cols=50 Identities=24% Similarity=0.287 Sum_probs=32.2
Q ss_pred CCCEEEEEEEEeecccCCCceeEEEEEecCCCCceEEEEEeCChh--h----hccCCCCCcEEEEE
Q 018229 46 AGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA--D----LGQLVPTGTCVYVE 105 (359)
Q Consensus 46 ~gk~V~I~GwV~siR~~Gk~kl~Fi~LRDgsg~~~lQVVv~~~~~--~----~~~~L~~esvV~V~ 105 (359)
+|+. +.|.|.++...| +|++| ++.+ +..++..... . ..+.++.||.|.|.
T Consensus 22 vG~i--v~G~V~~I~~fG----aFV~l-~g~~---~~Glvhisel~~~~~~~~~~~~~~Gd~V~Vk 77 (119)
T 2cqo_A 22 LYTI--FQGEVAMVTDYG----AFIKI-PGCR---KQGLVHRTHMSSCRVDKPSEIVDVGDKVWVK 77 (119)
T ss_dssp TTCE--EEEEEEEEETTE----EEEEC-TTCS---SCEEEEHHHHCSSCCSCHHHHCCTTCEEEEE
T ss_pred CCCE--EEEEEEEEeCce----EEEEE-CCCc---EEEEEEHHHCCcccccChhhcCCCCCEEEEE
Confidence 4554 779999999988 79999 4422 3445543321 1 12247899998865
No 139
>4dam_A Single-stranded DNA-binding protein 1; OB-fold; 1.70A {Streptomyces coelicolor}
Probab=24.51 E-value=36 Score=28.12 Aligned_cols=47 Identities=19% Similarity=0.341 Sum_probs=31.4
Q ss_pred EEEEEeCChhh-hccCCCCCcEEEEEeEEeCCCC---C-CcccEEEEEeEEE
Q 018229 81 LQVIVDKDVAD-LGQLVPTGTCVYVEGMLKNPPE---G-TKQKIELRVQKVV 127 (359)
Q Consensus 81 lQVVv~~~~~~-~~~~L~~esvV~V~G~v~~s~~---~-~~g~lEL~a~~i~ 127 (359)
+.|++-.+..+ ..+.|+.|+.|.|+|.+....- + +...+||.+++|-
T Consensus 65 ~~v~~wg~~Ae~~~~~l~KG~~V~VeGrL~~~~~dkdG~~r~~~ev~a~~vg 116 (128)
T 4dam_A 65 FTVWANRQLATNASGSLAVGDPVVVQGRLKVRTDVREGQSRTSADIDAVAIG 116 (128)
T ss_dssp EEEEEEHHHHHHHHHHCCTTCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred EEEEEEcHHHHHHHHhcCCCCEEEEEEEEEEeEEcCCCCEEEEEEEEEEEEE
Confidence 77777665432 3456899999999999875431 2 2345777777663
No 140
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=22.92 E-value=1.2e+02 Score=27.99 Aligned_cols=32 Identities=19% Similarity=0.296 Sum_probs=20.9
Q ss_pred hccCCCCCcEEEEEeEEeCCCCCCcccEEEEE
Q 018229 92 LGQLVPTGTCVYVEGMLKNPPEGTKQKIELRV 123 (359)
Q Consensus 92 ~~~~L~~esvV~V~G~v~~s~~~~~g~lEL~a 123 (359)
+...+++||-|.|+|++...+.+...-+++.+
T Consensus 208 Lvd~~~PGDrV~vtGI~~~~~~~~~~~~~~~l 239 (279)
T 1ltl_A 208 LVDTLTPGDIVRVTGTLRTVRDERTKRFKNFI 239 (279)
T ss_dssp GTTCCCTTCEEEEEEEEEEEEETTTTEEEEEE
T ss_pred ccCccCCCCEEEEEEEEEEeeCCCCceEEEEE
Confidence 34567899999999999765422233344443
No 141
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=21.61 E-value=2.9e+02 Score=25.40 Aligned_cols=63 Identities=11% Similarity=0.180 Sum_probs=43.6
Q ss_pred CCCEEEEEEEEeecc-cCCCceeEEEEEecCCCCc--------------------------eEEEEEeCChhhhccCCCC
Q 018229 46 AGRQVRVGGWVKTGR-EQGKGSFAFLEVNDGSCPA--------------------------NLQVIVDKDVADLGQLVPT 98 (359)
Q Consensus 46 ~gk~V~I~GwV~siR-~~Gk~kl~Fi~LRDgsg~~--------------------------~lQVVv~~~~~~~~~~L~~ 98 (359)
.|+.+-|.+.|-.+- ..+ ....+-+.|+|+.. ++||.+-.+...+++.|+.
T Consensus 153 ~~~f~DLv~qVv~v~~~~~--~~~~LyVwDgT~~~~~~~~~~~~~~~~~gd~~~~~~~~~lt~~V~~~d~h~~~~~~lk~ 230 (294)
T 1xjv_A 153 PMQYFDLTCQLLGKAEVDG--ASFLLKVWDGTRTPFPSWRVLIQDLVLEGDLSHIHRLQNLTIDILVYDNHVHVARSLKV 230 (294)
T ss_dssp SSCEEEEEEEEEEEEECSS--SEEEEEEECSSCCSSCBCCCCCCSSCCEECHHHHHHHGGGSEEEEEETTHHHHHHHCCT
T ss_pred cCCeeeEEEEEEEEEecCC--CeEEEEEECCCCCCCCccccccccccccCcccccccccCeeEEEEEEcchhHHHhcCCC
Confidence 478888999998653 233 35667789988643 3577665554444567999
Q ss_pred CcEEEEEeEEeC
Q 018229 99 GTCVYVEGMLKN 110 (359)
Q Consensus 99 esvV~V~G~v~~ 110 (359)
||+|.+...-.+
T Consensus 231 Gd~V~l~Nv~~k 242 (294)
T 1xjv_A 231 GSFLRIYSLHTK 242 (294)
T ss_dssp TCEEEEEEEEEE
T ss_pred CcEEEEeeeEEE
Confidence 999999876544
Done!