RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 018229
(359 letters)
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken
structural genomics/proteom initiative, RSGI, structural
genomics, ligase; HET: 4AD; 1.45A {Pyrococcus
horikoshii} PDB: 1x55_A* 1x56_A
Length = 434
Score = 185 bits (473), Expect = 3e-55
Identities = 45/182 (24%), Positives = 82/182 (45%), Gaps = 11/182 (6%)
Query: 31 LIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA 90
+I+ + + + L G++VR+ GWV T GK FL + D + +Q +V K+V
Sbjct: 1 MIEKVYCQ-EVKPELDGKKVRLAGWVYTNMRVGK--KIFLWIRDSTG--IVQAVVAKNVV 55
Query: 91 -----DLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLT 145
+ + + + V VEG++K E+ V+K+ + V P + +
Sbjct: 56 GEETFEKAKKLGRESSVIVEGIVKADE-RAPGGAEVHVEKLEVIQAVSEFPIPENPEQAS 114
Query: 146 LEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMF 205
E L D RT +A+ +++ L A +L K G+ + PI+ T EG +F
Sbjct: 115 PELLLDYRHLHIRTPKASAIMKVKETLIMAAREWLLKDGWHEVFPPILVTGAVEGGATLF 174
Query: 206 QV 207
++
Sbjct: 175 KL 176
Score = 135 bits (342), Expect = 3e-36
Identities = 26/61 (42%), Positives = 37/61 (60%)
Query: 298 DFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDL 357
+F + A+L+ S QL +E + V++ P+FRAE S T RHL EFW +E E A+ DL
Sbjct: 177 KYFDKYAYLSQSAQLYLEAAIFGLEKVWSLTPSFRAEKSRTRRHLTEFWHLELEAAWMDL 236
Query: 358 K 358
Sbjct: 237 W 237
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding,
protein biosynthesis; HET: NSS; 1.90A {Brugia malayi}
PDB: 2xti_A*
Length = 435
Score = 183 bits (468), Expect = 2e-54
Identities = 38/166 (22%), Positives = 65/166 (39%), Gaps = 8/166 (4%)
Query: 47 GRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQL--VPTGTCVYV 104
+V + GW+ R QGK F + DG+ LQV++ + V T V +
Sbjct: 11 NERVCIKGWIHRMRRQGKS-LMFFILRDGTG--FLQVLLMDKLCQTYDALTVNTECTVEI 67
Query: 105 EGMLKNPPEGTK--QKIELRVQKVVDVGMVDPAK-YPIPKTKLTLEFLRDRIPFRPRTNT 161
G +K PEG + EL +G P + + +++ + D R
Sbjct: 68 YGAIKEVPEGKEAPNGHELIADFWKIIGNAPPGGIDNVLNEEASVDKMLDNRHLVIRGEN 127
Query: 162 IAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQV 207
AA+ R+R A A G++ + P + + EG +F +
Sbjct: 128 AAALLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQVEGGSTLFNL 173
Score = 135 bits (342), Expect = 3e-36
Identities = 27/61 (44%), Positives = 36/61 (59%)
Query: 298 DFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDL 357
D+F Q+FLT S QL +ET + +V+ ++RAE S T RHLAE+ VE E F L
Sbjct: 174 DYFGEQSFLTQSSQLYLETCIPTLGDVFCIAQSYRAEKSRTRRHLAEYAHVEAECPFITL 233
Query: 358 K 358
Sbjct: 234 D 234
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA
synthetase, tRNA ligase, AARS, translation, ATP-binding,
nucleotide-binding; HET: 4AD; 2.83A {Entamoeba
histolytica} PDB: 3m4q_A
Length = 456
Score = 180 bits (458), Expect = 9e-53
Identities = 33/176 (18%), Positives = 62/176 (35%), Gaps = 13/176 (7%)
Query: 42 GAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDV---ADLGQLVPT 98
AGL G+ V GW R+ K F+E+ DGS Q ++ + +L+
Sbjct: 25 AAGLEGKLVTFKGWAYHIRKARKT-LIFVELRDGSG--YCQCVIFGKELCEPEKVKLLTR 81
Query: 99 GTCVYVEGMLKNPPEG-------TKQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRD 151
+ + G L +E++V + +G I ++
Sbjct: 82 ECSLEITGRLNAYAGKNHPPEIADILNLEMQVTEWKVIGESPIDLENIINKDSSIPQKMQ 141
Query: 152 RIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQV 207
R+ V ++R+ + + + F I P I + CEG +F++
Sbjct: 142 NRHIVIRSEHTQQVLQLRSEIQWYFRKYYHDNHFTEIQPPTIVKTQCEGGSTLFKL 197
Score = 133 bits (338), Expect = 1e-35
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 298 DFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDL 357
+F A+LT S QL +E+ ++ + ++RAE S T RHLAE+ +E E+ F
Sbjct: 198 QYFNEPAYLTQSSQLYLESVIASLGKSFCMLSSYRAEQSRTVRHLAEYLHLEAELPFISF 257
Query: 358 K 358
+
Sbjct: 258 E 258
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO
ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A*
3nen_A 1b8a_A*
Length = 438
Score = 161 bits (409), Expect = 7e-46
Identities = 45/171 (26%), Positives = 75/171 (43%), Gaps = 14/171 (8%)
Query: 45 LAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQL-----VPTG 99
L G++V+V GWV ++ G FL + D +Q+ K D + +
Sbjct: 14 LNGQKVKVAGWVWEVKDLGG--IKFLWIRDRDG--IVQITAPKKKVDPELFKLIPKLRSE 69
Query: 100 TCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPI---PKTKLTLEFLRDRIPFR 156
V VEG++ P K E+ +K+V + + P+ K K L+ D
Sbjct: 70 DVVAVEGVVNFTP-KAKLGFEILPEKIVVLNRAET-PLPLDPTGKVKAELDTRLDNRFMD 127
Query: 157 PRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQV 207
R + A+ +IR+++ A F + GF+ IHTP I + EG E+F +
Sbjct: 128 LRRPEVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATEGGTELFPM 178
Score = 111 bits (279), Expect = 2e-27
Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 298 DFFARQAFLTVSGQLQVET-YACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSD 356
+F AFL S QL + A + VY P FRAE +T+RHL E W ++ EMAF +
Sbjct: 179 KYFEEDAFLAQSPQLYKQIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIE 238
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE;
2.30A {Sulfolobus tokodaii}
Length = 429
Score = 154 bits (392), Expect = 2e-43
Identities = 44/182 (24%), Positives = 77/182 (42%), Gaps = 12/182 (6%)
Query: 31 LIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA 90
+ +S D G++V GWV R+ G F+ + D + QV+VDK+ +
Sbjct: 1 MYRSHFIA-DVTPEYDGKEVIWAGWVHLLRDLGG--KKFIILRDKTG--LGQVVVDKNSS 55
Query: 91 --DLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPI---PKTKLT 145
+ Q + + + V G++K + IEL +++ + P+ K K
Sbjct: 56 AFGISQELTQESVIQVRGIVKADK-RAPRGIELHAEEITLLSKAKA-PLPLDVSGKVKAD 113
Query: 146 LEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMF 205
++ R + AV +I++ A L K+GF+ I TP I S EG ++F
Sbjct: 114 IDTRLRERVLDLRRQEMQAVIKIQSLALKAFRETLYKEGFIEIFTPKIIASATEGGAQLF 173
Query: 206 QV 207
V
Sbjct: 174 PV 175
Score = 116 bits (292), Expect = 3e-29
Identities = 27/60 (45%), Positives = 35/60 (58%)
Query: 298 DFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDL 357
+F ++AFL S QL E A V V+ P +RAE S T HLAEF ++ EMAF+D
Sbjct: 176 IYFGKEAFLAQSPQLYKELMAGVVERVFEVAPAWRAEESDTPFHLAEFISMDVEMAFADY 235
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus
thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Length = 422
Score = 150 bits (380), Expect = 9e-42
Identities = 36/182 (19%), Positives = 73/182 (40%), Gaps = 20/182 (10%)
Query: 29 RVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKD 88
RVL++ + G++V + G++ R+ G+ FL + D S +QV+
Sbjct: 2 RVLVRDL-------KAHVGQEVELLGFLHWRRDLGR--IQFLLLRDRSG--VVQVVTGG- 49
Query: 89 VADLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVD---PAKYPIPKTKLT 145
+L + + V G++ +E++ ++V + P + P + +
Sbjct: 50 ----LKLPLPESALRVRGLVV-ENAKAPGGLEVQAKEVEVLSPALEPTPVEIPKEEWRAN 104
Query: 146 LEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMF 205
+ L + R A +++ AL +L +Q F I TP + + EG +F
Sbjct: 105 PDTLLEYRYVTLRGEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGLF 164
Query: 206 QV 207
V
Sbjct: 165 GV 166
Score = 111 bits (281), Expect = 9e-28
Identities = 22/57 (38%), Positives = 31/57 (54%)
Query: 298 DFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAF 354
D+F ++A+L S QL + VY P +R E HTSRHL E+ ++ EM F
Sbjct: 167 DYFEKRAYLAQSPQLYKQIMVGVFERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGF 223
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics,
PSI, protein structure initiative, southeast COLL for
structural genomics; 1.65A {Pyrococcus furiosus} SCOP:
d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A*
3rl6_A*
Length = 294
Score = 136 bits (345), Expect = 6e-38
Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 3/73 (4%)
Query: 289 KDGKIDYTQDFFARQAFLTVSGQLQVET-YACAVSNVYTFGPTFRAE--HSHTSRHLAEF 345
+G + + + LT S L + A + ++ P R E RH EF
Sbjct: 55 GEGMEPAEVEIYGVKMRLTHSMILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEF 114
Query: 346 WMVEPEMAFSDLK 358
++ E+ + ++
Sbjct: 115 TQLDFEVERAKME 127
Score = 90.3 bits (225), Expect = 7e-21
Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 4/58 (6%)
Query: 156 RPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITT----SDCEGAGEMFQVTT 209
+ I+ I+ + F K+GF ++ II+ + AGE +
Sbjct: 5 EIISREISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEGMEPAE 62
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA
ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces
cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A*
1asz_A*
Length = 487
Score = 138 bits (349), Expect = 5e-37
Identities = 43/204 (21%), Positives = 76/204 (37%), Gaps = 32/204 (15%)
Query: 29 RVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSC------PANLQ 82
RV + A + ++V V R+QG + AFL + + AN +
Sbjct: 23 RVKFVDLDE-----AKDSDKEVLFRARVHNTRQQGA-TLAFLTLRQQASLIQGLVKANKE 76
Query: 83 VIVDKDVADLGQLVPTGTCVYVEGMLKNPPEG----TKQKIELRVQKVVDVGMVDPAKYP 138
+ K++ + + V V G++K E T Q +E+ + K+ + A P
Sbjct: 77 GTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETPEA-LP 135
Query: 139 IPKTK---------------LTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQ 183
I + L+ D RT T A+ RI+ + +L +
Sbjct: 136 ILLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLRTVTNQAIFRIQAGVCELFREYLATK 195
Query: 184 GFLYIHTPIITTSDCEGAGEMFQV 207
F +HTP + + EG +F+V
Sbjct: 196 KFTEVHTPKLLGAPSEGGSSVFEV 219
Score = 106 bits (266), Expect = 1e-25
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 298 DFFARQAFLTVSGQLQVETYACAV-SNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSD 356
+F +A+L S Q + A VY GP FRAE+S+T RH+ EF ++ EMAF +
Sbjct: 220 TYFKGKAYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEE 279
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding,
aminoacyl-tRNA synthetase, LI nucleotide-binding,
protein biosynthesis; 2.80A {Entamoeba histolytica}
Length = 548
Score = 107 bits (268), Expect = 1e-25
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 298 DFFARQAFLTVSGQLQVETYACAV-SNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSD 356
+F R+A+L S QL + V+ GP FRAE+S+T RHL EF ++ EM +
Sbjct: 286 KYFDRKAYLAQSPQLYKQMAIMGDFRKVFEVGPVFRAENSNTRRHLTEFEGLDIEMEIVE 345
Score = 87.6 bits (217), Expect = 4e-19
Identities = 31/167 (18%), Positives = 58/167 (34%), Gaps = 9/167 (5%)
Query: 50 VRVGGWVKTGREQGKGSF---------AFLEVNDGSCPANLQVIVDKDVADLGQLVPTGT 100
+ G VK + + + + V+ P +Q+ + + +
Sbjct: 119 CDITGIVKAVEKPIEKATQQDVEIHVTSIAVVSLAEYPLPMQIEDLTFPSSVFKKQEEDI 178
Query: 101 CVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTN 160
E + K + + + R K ++ K++ + D RT
Sbjct: 179 AKVDEKIAKFLKDNEGKDLTKRPLKDEYAKLLKEKASAQKYVKVSQDTRLDNRMLDLRTV 238
Query: 161 TIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQV 207
T A+ RI++A FL Q F+ IHTP + EG +F+V
Sbjct: 239 TNIAIFRIQSACCGLFREFLTSQKFVEIHTPKLIGCSSEGGSNIFEV 285
Score = 59.4 bits (144), Expect = 6e-10
Identities = 20/116 (17%), Positives = 42/116 (36%), Gaps = 20/116 (17%)
Query: 29 RVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIV--- 85
I+ + +A + V + V+ R +G FL + G Q +V
Sbjct: 50 YTEIEEL------VPAMAEKTVTIRARVQAVRGKGN--MVFLFLRKGI--YTCQALVMKS 99
Query: 86 ---DKDVADLGQLVPTGTCVYVEGMLKNPPEG----TKQKIELRVQKVVDVGMVDP 134
K+ Q + + + G++K + T+Q +E+ V + V + +
Sbjct: 100 ETISKEFVQFCQKISAESICDITGIVKAVEKPIEKATQQDVEIHVTSIAVVSLAEY 155
>2djv_A Methionyl-tRNA synthetase; EC 6.1.1.10, WHEP-TRS domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 56.2 bits (135), Expect = 1e-10
Identities = 17/73 (23%), Positives = 30/73 (41%)
Query: 223 KNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKL 282
I+A + ++G V +LK+ KA + ++A V +L K+ LA E +
Sbjct: 6 SGTTAKPQQIQALMDEVTKQGNIVRELKAQKADKNEVAAEVAKLLDLKKQLAVAEGKPPE 65
Query: 283 KPGIPQKDGKIDY 295
P +K
Sbjct: 66 APKGKKKKSGPSS 78
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex;
HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia
coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A*
1eqr_A*
Length = 585
Score = 47.1 bits (113), Expect = 6e-06
Identities = 43/170 (25%), Positives = 72/170 (42%), Gaps = 22/170 (12%)
Query: 45 LAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQL---VPTGTC 101
G+QV + GWV R+ GS F+++ D +QV D D AD +L + C
Sbjct: 13 HVGQQVTLCGWVNRRRD--LGSLIFIDMRDRE--GIVQVFFDPDRADALKLASELRNEFC 68
Query: 102 VYVEGMLKNPPEGTKQ------KIELRVQKVVDVGMVDPAKY-PIPKTKLTLEFLRDRIP 154
+ V G ++ E +IE+ + +++ A P+ + E R +
Sbjct: 69 IQVTGTVRARDEKNINRDMATGEIEVLASSLT---IINRADVLPLDSNHVNTEEARLK-- 123
Query: 155 FR---PRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGA 201
+R R +A + R + F+ GFL I TP++T + EGA
Sbjct: 124 YRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGA 173
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.0 bits (108), Expect = 2e-05
Identities = 65/430 (15%), Positives = 123/430 (28%), Gaps = 118/430 (27%)
Query: 6 LPVDQ---VATMDLND--DAVQRHQFSDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGR 60
L V + V D D D + S I I+ D A W
Sbjct: 22 LSVFEDAFVDNFDCKDVQDMP-KSILSKEE-IDHIIMSKD-----AVSGTLRLFWTLL-S 73
Query: 61 EQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTG-TCVYVEG---MLKNPPEGTK 116
+Q + F+E N + ++ + Q P+ T +Y+E + + K
Sbjct: 74 KQEEMVQKFVE---EVLRINYKFLMSPIKTEQRQ--PSMMTRMYIEQRDRLYNDNQVFAK 128
Query: 117 ------QKI--------ELRVQKVVDV-GMVDPAKYPIPKTKLTLEFLRD-----RIPFR 156
Q ELR K V + G++ KT + L+ ++ F+
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLG-----SGKTWVALDVCLSYKVQCKMDFK 183
Query: 157 PRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADK 216
+ + + T L+ L I + + + I
Sbjct: 184 --------IFWLNLKNCNSPETVLEMLQKLLYQ---IDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 217 LEKELIKNPPPSEA-----DIEAAK-----------LVIKEKGEAVAKLKSDKAGREAIS 260
+ L+K+ P +++ AK L+ + L + ++
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292
Query: 261 ASVTELTK--AKENLAK-LEER-SKLKP----GIPQ---------KDGK--IDYTQDFF- 300
LT K L K L+ R L P+ +DG D +
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC 352
Query: 301 -----ARQAFLTV--SGQLQVETY-ACAVSNVYTFGPTFRAEHSH-TSRHLAEFWM---- 347
++ L V + + + + +V F +H + L+ W
Sbjct: 353 DKLTTIIESSLNVLEPAEYR-KMFDRLSV---------FP-PSAHIPTILLSLIWFDVIK 401
Query: 348 VEPEMAFSDL 357
+ + + L
Sbjct: 402 SDVMVVVNKL 411
Score = 35.2 bits (80), Expect = 0.036
Identities = 37/275 (13%), Positives = 68/275 (24%), Gaps = 99/275 (36%)
Query: 15 DLNDDAVQRHQFSDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQG----KGSFAFL 70
DL + + + + I + W ++ + S L
Sbjct: 317 DLPREVLTTNPR----RLSII------AESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366
Query: 71 EVNDGSCPANLQ------VIVDKDVADLGQLVPTGT-CVY--------VEGML------- 108
E PA + + +PT + V ++
Sbjct: 367 E------PAEYRKMFDRLSVFPPSA-----HIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415
Query: 109 ---KNPPEGT----------KQKIELRVQ---KVVDVGMVDPAKYPIPKTKLTLEFLRDR 152
K P E T K K+E +VD Y IPKT F D
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD-------HYNIPKT-----FDSDD 463
Query: 153 IPFRPRTNTIAAVARIRNALAYATHTFLQKQG---------FL---YIHTPII-TTSDCE 199
+ + + + H + FL ++ I ++
Sbjct: 464 LIPPYLDQYFY------SHIGH--HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWN 515
Query: 200 GAGEMFQVTTLISDADKLEKELIKNPPPSEADIEA 234
+G + + + + N P E + A
Sbjct: 516 ASGS---ILNTLQQLKFYKPYICDNDPKYERLVNA 547
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme,
flexible domains, ligase; 2.01A {Thermus thermophilus}
SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Length = 580
Score = 45.6 bits (109), Expect = 2e-05
Identities = 37/180 (20%), Positives = 68/180 (37%), Gaps = 33/180 (18%)
Query: 43 AGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVD--KDVADLGQLVPTGT 100
G +V + GWV R+ G FL++ D +Q++ + V
Sbjct: 12 ETHVGEEVVLEGWVNRRRD--LGGLIFLDLRDRE--GLVQLVAHPASPAYATAERVRPEW 67
Query: 101 CVYVEGMLKNPPEGTKQ----KIELRVQKVVDVGMVDPAKYPIPKTKLTLEF-------- 148
V +G+++ PE + ++E+ + + + +P+ E
Sbjct: 68 VVRAKGLVRLRPEPNPRLATGRVEVELSALEVLAEAKTPPFPVDAGWRGEEEKEASEELR 127
Query: 149 -------LRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGA 201
LR R R + R+R+ + A FL ++GF+ + TP +T S EGA
Sbjct: 128 LKYRYLDLR-----RRR---MQENLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTPEGA 179
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.9 bits (103), Expect = 8e-05
Identities = 65/425 (15%), Positives = 125/425 (29%), Gaps = 148/425 (34%)
Query: 11 VATMDLNDDAVQ-------RHQFSDRVLIKSILTRPDGGA---GLAGRQVRV----GGWV 56
A + +D ++ + R++ K + A + ++ GG
Sbjct: 105 AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG-- 162
Query: 57 KTGREQGKGSFAFLEVND--GSCPANLQVIVDKDVADLGQLVPTGTC---VYVEGM---- 107
QG F E+ D + + ++ L +L+ T V+ +G+
Sbjct: 163 -----QGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILE 217
Query: 108 -LKNP---PEGTKQKIELRVQKVVD-----------VGMVDPAKYPIP--KTKLTLEFLR 150
L+NP P+ D +G++ A Y + T LR
Sbjct: 218 WLENPSNTPD-------------KDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELR 264
Query: 151 DRIPFRPRTNT------IAAVA------------RIRNALAYATHTFLQ-KQGFLYIHTP 191
+ + T + AVA +R A+ ++ + + P
Sbjct: 265 SYL----KGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLP 320
Query: 192 IITTSDCEGAGE-----MFQVT-----TLISDADKLEKELIKNPPPSEADIEAAKLVIKE 241
D E M ++ + +K L P+ +E + LV
Sbjct: 321 PSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHL-----PAGKQVEIS-LVN-- 372
Query: 242 KGEAVAKLKSDKAGREA--ISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDF 299
G + +S L L K K G+ Q +I +++
Sbjct: 373 -------------GAKNLVVSGPPQSLYGLNLTLRKA----KAPSGLDQS--RIPFSE-- 411
Query: 300 FARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSH---TSRHLAEFWMVEPEMAF-- 354
R+ L S + F P HSH + L +V+ ++F
Sbjct: 412 --RK--LKFSNR---------------FLPVASPFHSHLLVPASDLINKDLVKNNVSFNA 452
Query: 355 SDLKL 359
D+++
Sbjct: 453 KDIQI 457
Score = 33.1 bits (75), Expect = 0.17
Identities = 22/142 (15%), Positives = 45/142 (31%), Gaps = 39/142 (27%)
Query: 26 FSDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGS-----CPAN 80
L++ + R G+ + V E G+ ++ + +N G
Sbjct: 1779 IES--LVEVVFYR-----GMTMQVA-----VPRD-ELGRSNYGMIAINPGRVAASFSQEA 1825
Query: 81 LQVIVDKDVADLGQLV-------PTGTCVYVEGMLKNPPEGTKQKIEL--RVQKVVDVGM 131
LQ +V++ G LV YV G + ++ V + +
Sbjct: 1826 LQYVVERVGKRTGWLVEIVNYNVENQQ--YVAA-------GDLRALDTVTNVLNFIKLQK 1876
Query: 132 VDPAKYPIPKTKLTLEFLRDRI 153
+D + L+LE + +
Sbjct: 1877 IDIIELQK---SLSLEEVEGHL 1895
Score = 32.3 bits (73), Expect = 0.33
Identities = 45/243 (18%), Positives = 75/243 (30%), Gaps = 71/243 (29%)
Query: 70 LEVNDGS-CPANLQVI------VDKDVADLGQLVPTGTCVYVEGMLKN---------PPE 113
LE N+G P L + V V +P G V + L N PP+
Sbjct: 328 LENNEGVPSPM-LSISNLTQEQVQDYVNKTNSHLPAGKQVEIS--LVNGAKNLVVSGPPQ 384
Query: 114 GTKQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTI----------- 162
+ + L ++K K L+ + RIPF R
Sbjct: 385 -SLYGLNLTLRKA--------------KAPSGLD--QSRIPFSERKLKFSNRFLPVASPF 427
Query: 163 ------AAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADK 216
A I L +F K + I P+ T D G +V + S +++
Sbjct: 428 HSHLLVPASDLINKDLVKNNVSFNAKD--IQI--PVYDTFD----GSDLRVLS-GSISER 478
Query: 217 LEKELIKNPP--PSEADIEAAKLV------IKEKGEAVAKLKSDKAGREAISASVTELTK 268
+ +I+ P + +A ++ G + K D G I A ++
Sbjct: 479 IVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNK-DGTGVRVIVAGTLDINP 537
Query: 269 AKE 271
+
Sbjct: 538 DDD 540
>1d2d_A TRNA synthetase, tRNA ligase; tRNA synthetase (ligase), protein
transcription; NMR {Cricetulus griseus} SCOP: a.16.1.3
PDB: 1r1b_A
Length = 59
Score = 38.4 bits (89), Expect = 2e-04
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 239 IKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKD 290
I +GE V KLK++KA + ++ +V L K + + PG+
Sbjct: 6 IAAQGEVVRKLKAEKAPKAKVTEAVECLLSLKAEYKEKTG-KEYVPGLEHHH 56
>1fyj_A Multifunctional aminoacyl-tRNA synthetase; helix-turn-helix,
ligase; NMR {Homo sapiens} SCOP: a.16.1.3
Length = 57
Score = 36.8 bits (85), Expect = 4e-04
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 239 IKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIP 287
+ +G+ V +LK+ KA +E + A+V +L K + + KPG P
Sbjct: 9 VAVQGDVVRELKAKKAPKEDVDAAVKQLLSLKAEYKEKTGQEY-KPGNP 56
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP,
aminoacyl-tRNA synthetase, ATP-binding,
charcot-marie-tooth disease, disease mutation; HET: B4P;
2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A*
2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Length = 693
Score = 41.2 bits (96), Expect = 5e-04
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 9/104 (8%)
Query: 226 PPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPG 285
+E + +L ++++G+ V KLK DKA + + +V EL K L +E +
Sbjct: 4 AGAEEVLAPLRLAVRQQGDLVRKLKEDKAPQVDVDKAVAELKARKRVLEA-KELALQPKD 62
Query: 286 IPQKDGKIDYTQDFFARQAFLTVSGQLQVETYACAVSNVYTFGP 329
K++ D R+ F + Y VS +Y FGP
Sbjct: 63 DIVDRAKME---DTLKRRFFYDQAF----AIYG-GVSGLYDFGP 98
>1x59_A Histidyl-tRNA synthetase; hisrs, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 73
Score = 37.0 bits (85), Expect = 7e-04
Identities = 20/61 (32%), Positives = 27/61 (44%)
Query: 227 PSEADIEAAKLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGI 286
A+ A + ++K +GE V LK KA E I V +L K K L E + K
Sbjct: 6 SGMAERAALEELVKLQGERVRGLKQQKASAELIEEEVAKLLKLKAQLGPDESKQKFVLKT 65
Query: 287 P 287
P
Sbjct: 66 P 66
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.088
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 8/30 (26%)
Query: 241 EKGEAVAKLKS-------DKAGREAISASV 263
EK +A+ KL++ D A AI A++
Sbjct: 18 EK-QALKKLQASLKLYADDSAPALAIKATM 46
Score = 32.2 bits (72), Expect = 0.12
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 15/44 (34%)
Query: 270 KENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQ 313
K+ L KL+ + LK Y D + A L + ++
Sbjct: 19 KQALKKLQ--ASLKL----------YADD--SAPA-LAIKATME 47
Score = 26.5 bits (57), Expect = 9.3
Identities = 9/29 (31%), Positives = 10/29 (34%), Gaps = 5/29 (17%)
Query: 216 KLEKELIKNPPPSEADIEAAKLVIKEKGE 244
KL+ L S A L IK E
Sbjct: 24 KLQASLKLYADDS-----APALAIKATME 47
>1sr3_A APO-CCME; OB fold, beta barrel, flexible C-terminal domain,
chaperone; NMR {Escherichia coli} SCOP: b.40.9.1
Length = 136
Score = 30.6 bits (69), Expect = 0.30
Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 9/75 (12%)
Query: 39 PDGGAGLAGRQVRVGGWVKTG---REQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQL 95
G+++RVGG V G R+ F + D ++ V + + D L
Sbjct: 20 ETQQMPEVGQRLRVGGMVMPGSVQRDPNSLKVTF-TIYDAE--GSVDVSYEGILPD---L 73
Query: 96 VPTGTCVYVEGMLKN 110
G V V+G L+
Sbjct: 74 FREGQGVVVQGELEK 88
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.5 bits (68), Expect = 0.63
Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 17/77 (22%)
Query: 211 ISDADKL--EKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKS---DKAGREAISASVTE 265
I+ AD+L E E I+ + E K ++E A ++ +KA ++ + E
Sbjct: 74 IAQADRLTQEPESIR-----KWREEQRKR-LQELDAASKVMEQEWREKAKKD-----LEE 122
Query: 266 LTK-AKENLAKLEERSK 281
+ E + K + ++
Sbjct: 123 WNQRQSEQVEKNKINNR 139
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B
O-methyl tyrosine binding, magnesium binding,
aminoacylatio esterification; HET: 0A1 ANP; 1.75A
{Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A*
2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A*
Length = 290
Score = 30.6 bits (69), Expect = 0.71
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 324 VYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDL 357
++ GP +R E HL EF M+ S
Sbjct: 158 IFEIGPCYRKESD-GKEHLEEFTMLVFWQMGSGC 190
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein
biosynthesis, AMI tRNA synthetase, ATP-binding,
magnesium; HET: B4P LYN; 1.80A {Geobacillus
stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Length = 493
Score = 29.4 bits (67), Expect = 2.1
Identities = 37/179 (20%), Positives = 64/179 (35%), Gaps = 65/179 (36%)
Query: 46 AGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDV-----------ADL-- 92
+V V G + T R GK FA ++ D + +Q+ V +D +DL
Sbjct: 55 QQIEVAVAGRIMTKRGMGKAGFAHIQ--DVT--GQIQIYVRQDDVGEQQYELFKISDLGD 110
Query: 93 -----GQLVPTGT---CVYVEGM------LKNPPEGTK----QKIELRV-QKVVDVGMVD 133
G + T + V L+ PE K + IE R Q+ +D+ +++
Sbjct: 111 IVGVRGTMFKTKVGELSIKVSSYEFLTKALRPLPE--KYHGLKDIEQRYRQRYLDL-IMN 167
Query: 134 PAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPI 192
P + F R+ I + +R +L G+L + TP+
Sbjct: 168 PE-------------SKKT--FITRSLIIQS---MRR--------YLDSHGYLEVETPM 200
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute
of allergy AN infectious diseases; HET: LYS; 2.40A
{Burkholderia thailandensis}
Length = 529
Score = 29.1 bits (66), Expect = 2.6
Identities = 43/179 (24%), Positives = 62/179 (34%), Gaps = 65/179 (36%)
Query: 46 AGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDV-----------ADL-- 92
+V + G + R GK SFA ++ DGS +Q V DL
Sbjct: 85 KSLEVAIAGRMMLKRVMGKASFATVQ--DGS--GQIQFFVTPADVGAETYDAFKKWDLGD 140
Query: 93 -----GQLVPTGT---CVYVEGM------LKNPPEGTK----QKIELRV-QKVVDVGMVD 133
G L T V + L+ P+ K E R Q+ VD+ +V
Sbjct: 141 IVAARGVLFRTNKGELSVKCTQLRLLAKALRPLPD--KFHGLADQETRYRQRYVDL-IVT 197
Query: 134 PAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPI 192
P+T+ T FR RT IA+ IR F+ F+ + TP+
Sbjct: 198 ------PETRTT---------FRARTKAIAS---IRK--------FMGDADFMEVETPM 230
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA
synthetase, protein biosynthesis; HET: LYS; 2.12A
{Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A*
1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Length = 504
Score = 28.6 bits (65), Expect = 3.1
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 46 AGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDV 89
+V V G + T R GK SF L+ D +Q+ V +D
Sbjct: 63 LNIEVSVAGRMMTRRIMGKASFVTLQ--DVG--GRIQLYVARDS 102
>2blf_A SORA, sulfite\:cytochrome C oxidoreductase subunit A; sulfite
oxidase, molybdopterin, C-type cytochrome, heme,
electron transport; HET: MSS HEC; 1.8A {Starkeya
novella} PDB: 2bpb_A* 2c9x_A* 2ca3_A* 2ca4_A*
Length = 373
Score = 28.5 bits (64), Expect = 3.5
Identities = 9/53 (16%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 3 DNELPVDQVATMDLNDDAVQRHQFSDRVLIKSILTRPDGGAGLAGRQVRVGGW 55
+P + A + +R ++S +T + GA + +V + G
Sbjct: 235 AYRIPDNACACTEPGKAPTAT-IPINRFDVRSFITNVENGASVKAGEVPLRGI 286
>1tcv_A Purine-nucleoside phosphorylase; transferase; HET: NDS; 1.75A
{Schistosoma mansoni} PDB: 1tcu_A* 1td1_A 3djf_A*
3e0q_A* 3e9r_A* 3e9z_A* 3f8w_A* 3faz_A* 3fb1_A* 3fnq_A*
3iex_A*
Length = 287
Score = 27.9 bits (63), Expect = 4.4
Identities = 4/29 (13%), Positives = 7/29 (24%)
Query: 131 MVDPAKYPIPKTKLTLEFLRDRIPFRPRT 159
M + I K ++ P
Sbjct: 1 MHESVTANIENVKKVAHHIQKLTSIVPEI 29
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia
coli} SCOP: a.8.4.1 b.130.1.1
Length = 227
Score = 27.9 bits (63), Expect = 4.4
Identities = 14/80 (17%), Positives = 25/80 (31%), Gaps = 22/80 (27%)
Query: 213 DADKLEKELI--KNPPPSEAD--IEAAKLVIKEKGE------------AVAKLKSDKAG- 255
+ D + L K EA +E+ + A A L G
Sbjct: 133 EQDVKARMLAEQKV----EAARVLESLHGALAADAALLSAAERQVIDDAAAHLSEVAQGD 188
Query: 256 -REAISASVTELTKAKENLA 274
+AI ++ + K ++ A
Sbjct: 189 DVDAIEQAIKNVDKQTQDFA 208
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 28.4 bits (63), Expect = 4.6
Identities = 8/42 (19%), Positives = 12/42 (28%), Gaps = 7/42 (16%)
Query: 324 VYTFGP--TFRAEHSHTSRHLAEF-----WMVEPEMAFSDLK 358
F FR E HL + + + +D K
Sbjct: 225 FKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGK 266
Score = 27.3 bits (60), Expect = 8.9
Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 16/89 (17%)
Query: 239 IKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLK---PGIPQKDGK--- 292
+ +G + K + E I + + KA L + K+ P I GK
Sbjct: 13 LVPRGSHMFKRE------EIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHP 66
Query: 293 ----IDYTQDFFARQAFLTVSGQLQVETY 317
I+ + + R F + V+
Sbjct: 67 VNDTIENLRQAYLRMGFEEYINPVIVDER 95
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 28.3 bits (63), Expect = 5.0
Identities = 17/93 (18%), Positives = 38/93 (40%), Gaps = 10/93 (10%)
Query: 206 QVTTLISDADKLEKELIKNPPPSEADIEAAKLVI----KEKGEAVAKLKSDKAGREAISA 261
+ L ++ K++++++ E +E + EK A K+K + +
Sbjct: 942 RSQQLQAEKKKMQQQMLD----LEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMED 997
Query: 262 SVTELTKAKENLAKLEERSKLKPGIPQKDGKID 294
+LTK ++ L E S L + +++ K
Sbjct: 998 QNNKLTKERKLLE--ERVSDLTTNLAEEEEKAK 1028
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann
fold catalytical domain, recognition domain, bound
Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP:
a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A*
2quk_A
Length = 477
Score = 28.0 bits (62), Expect = 5.4
Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 1/60 (1%)
Query: 239 IKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQD 298
I +GE V LK+ A ++ I ++V L K + K P +
Sbjct: 16 IATQGELVRSLKAGNASKDEIDSAVKMLVSLKMSYKAAAGED-YKADCPPGNPAPTSNHG 74
>3qll_A Citrate lyase; beta barrel; 2.45A {Yersinia pestis}
Length = 316
Score = 28.0 bits (63), Expect = 5.5
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 227 PSEADIEAAKLVIKEKGEAVAKL 249
P+ A+I A+ V+ E + V +
Sbjct: 270 PTAAEIRHARAVLAENTKGVGTV 292
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 685
Score = 28.0 bits (62), Expect = 6.3
Identities = 8/42 (19%), Positives = 12/42 (28%), Gaps = 7/42 (16%)
Query: 324 VYTFGP--TFRAEHSHTSRHLAEF-----WMVEPEMAFSDLK 358
F FR E HL + + + +D K
Sbjct: 225 FKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGK 266
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB:
3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A
1bpr_A 2bpr_A 1dg4_A
Length = 219
Score = 27.2 bits (61), Expect = 6.9
Identities = 18/87 (20%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 213 DADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKE- 271
+AD+ +EL++ + + + + ++E G+ K + AI +++T L A +
Sbjct: 136 EADRKFEELVQTRNQGDHLLHSTRKQVEEAGD-----KLPADDKTAIESALTALETALKG 190
Query: 272 -NLAKLEERSKLKPGIPQKDGKIDYTQ 297
+ A +E + + + QK +I Q
Sbjct: 191 EDKAAIEAKMQELAQVSQKLMEIAQQQ 217
>1hn0_A Chondroitin ABC lyase I; chondroitinase ABC I, chonroitin
digestion, mechanism; 1.90A {Proteus vulgaris} SCOP:
a.102.3.2 b.18.1.17 b.24.1.1 b.30.5.2
Length = 1021
Score = 27.9 bits (61), Expect = 7.4
Identities = 7/42 (16%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 39 PDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPAN 80
RQ +V K + +G+F+ ++ + P +
Sbjct: 830 TQAEKVNVSRQHQVSAENKNRQPT-EGNFSSAWIDHSTRPKD 870
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm,
FAD, flavoprotein, oxidoreductase, porphyrin
biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Length = 470
Score = 27.6 bits (61), Expect = 7.6
Identities = 28/127 (22%), Positives = 46/127 (36%), Gaps = 23/127 (18%)
Query: 51 RVGGWVKTGREQG----KGSFAFLEVNDGSCPANLQVIVDKDVADLG---QLVPTGT--- 100
RVGG ++T ++ G +G +FLE + V DLG LV T
Sbjct: 45 RVGGKIQTVKKDGYIIERGPDSFLERKKS---------APQLVKDLGLEHLLVNNATGQS 95
Query: 101 CVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTN 160
V V L P+G I ++ V G+ + K + ++F+ + +
Sbjct: 96 YVLVNRTLHPMPKGAVMGIPTKIAPFVSTGLFSLS----GKARAAMDFILPASKTKDDQS 151
Query: 161 TIAAVAR 167
R
Sbjct: 152 LGEFFRR 158
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 665
Score = 27.6 bits (61), Expect = 8.0
Identities = 8/42 (19%), Positives = 12/42 (28%), Gaps = 7/42 (16%)
Query: 324 VYTFGP--TFRAEHSHTSRHLAEF-----WMVEPEMAFSDLK 358
F FR E HL + + + +D K
Sbjct: 225 FKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGK 266
>1y7m_A Hypothetical protein BSU14040; surface mutagenesis, cysteine
proteases, cell WALL catabolism, structural genomics,
PSI; 2.05A {Bacillus subtilis subsp} SCOP: b.160.1.1
d.7.1.1
Length = 164
Score = 26.5 bits (59), Expect = 9.0
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 87 KDVADLGQLVPTGTCVYV 104
KDV +L +VP GT V +
Sbjct: 145 KDVIELASIVPNGTRVTI 162
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.382
Gapped
Lambda K H
0.267 0.0805 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,491,819
Number of extensions: 344142
Number of successful extensions: 859
Number of sequences better than 10.0: 1
Number of HSP's gapped: 834
Number of HSP's successfully gapped: 62
Length of query: 359
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 264
Effective length of database: 4,049,298
Effective search space: 1069014672
Effective search space used: 1069014672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.0 bits)