RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 018229
(359 letters)
>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS)
{Thermus thermophilus, AspRS-2 [TaxId: 274]}
Length = 304
Score = 65.6 bits (159), Expect = 1e-12
Identities = 14/53 (26%), Positives = 22/53 (41%)
Query: 158 RTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 210
R A +++ AL +L +Q F I TP + + EG +F V
Sbjct: 7 RGEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGLFGVDYF 59
Score = 44.4 bits (104), Expect = 1e-05
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 291 GKIDYTQ-DFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVE 349
G D+F ++A+L S QL + VY P +R E HTSRHL E+ ++
Sbjct: 49 GGSGLFGVDYFEKRAYLAQSPQLYKQIMVGVFERVYEVAPVWRMEEHHTSRHLNEYLSLD 108
Query: 350 PEMAF 354
EM F
Sbjct: 109 VEMGF 113
>d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 293
Score = 65.5 bits (159), Expect = 1e-12
Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 4/57 (7%)
Query: 158 RTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITT----SDCEGAGEMFQVTTL 210
+ I+ I+ + F K+GF ++ II+ + AGE + +
Sbjct: 6 ISREISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEGMEPAEV 62
Score = 58.6 bits (141), Expect = 2e-10
Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 3/73 (4%)
Query: 287 PQKDGKIDYTQDFFARQAFLTVSGQLQVE-TYACAVSNVYTFGPTFRAE--HSHTSRHLA 343
P +G + + + LT S L + A + ++ P R E RH
Sbjct: 52 PAGEGMEPAEVEIYGVKMRLTHSMILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAY 111
Query: 344 EFWMVEPEMAFSD 356
EF ++ E+ +
Sbjct: 112 EFTQLDFEVERAK 124
>d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS)
{Escherichia coli, gene lysU [TaxId: 562]}
Length = 342
Score = 62.9 bits (152), Expect = 1e-11
Identities = 8/52 (15%), Positives = 19/52 (36%)
Query: 158 RTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTT 209
+ +R+ + A F+ +GF+ + TP++ + F
Sbjct: 15 ANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITHH 66
Score = 34.8 bits (79), Expect = 0.014
Identities = 11/59 (18%), Positives = 22/59 (37%)
Query: 298 DFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSD 356
+ +L ++ +L ++ + RH EF M+E MA++D
Sbjct: 67 NALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYAD 125
>d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase
(AspRS) {Escherichia coli [TaxId: 562]}
Length = 346
Score = 62.1 bits (150), Expect = 2e-11
Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Query: 138 PIPKTKLTLEFLRDRIPFRP---RTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIIT 194
P+ + E R + +R R +A + R + F+ GFL I TP++T
Sbjct: 3 PLDSNHVNTEEARLK--YRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLT 60
Query: 195 TSDCEGAGEMFQVT 208
+ EGA + +
Sbjct: 61 KATPEGARDYLVPS 74
Score = 48.6 bits (115), Expect = 4e-07
Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 2/65 (3%)
Query: 294 DYTQDFFARQAFLTVSGQLQVETYACAVSNVY-TFGPTFRAEHSHTSRHLAEFWMVEPEM 352
++ + L S QL + + + Y FR E R EF ++ E
Sbjct: 72 VPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQ-PEFTQIDVET 130
Query: 353 AFSDL 357
+F
Sbjct: 131 SFMTA 135
>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 353
Score = 59.9 bits (144), Expect = 1e-10
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 158 RTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 210
RT T A+ RI+ + +L + F +HTP + + EG +F+VT
Sbjct: 36 RTVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEVTYF 88
Score = 39.1 bits (90), Expect = 6e-04
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 285 GIPQKDGKIDYTQDFFARQAFLTVSGQLQVETYACA-VSNVYTFGPTFRAEHSHTSRHLA 343
G P + G + +F +A+L S Q + A VY GP FRAE+S+T RH+
Sbjct: 73 GAPSEGGSSVFEVTYFKGKAYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMT 132
Query: 344 EFWMVEPEMAFSD 356
EF ++ EMAF +
Sbjct: 133 EFTGLDMEMAFEE 145
>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase
(AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]}
Length = 356
Score = 55.2 bits (132), Expect = 3e-09
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 158 RTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQ 206
R + R+R+ + A FL ++GF+ + TP +T S EGA +
Sbjct: 32 RRRRMQENLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTPEGARDFLV 80
Score = 36.3 bits (83), Expect = 0.004
Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 2/61 (3%)
Query: 295 YTQDFFARQAFLTVSGQLQVETYACA-VSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMA 353
+ L S QL + A + + FR E +F ++ EM+
Sbjct: 81 PYRHEPGLFYALPQSPQLFKQMLMVAGLDRYFQIARCFRDEDLRA-DRQPDFTQLDLEMS 139
Query: 354 F 354
F
Sbjct: 140 F 140
>d1n9wa1 b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS) {Thermus
thermophilus, AspRS-2 [TaxId: 274]}
Length = 93
Score = 50.2 bits (120), Expect = 8e-09
Identities = 23/112 (20%), Positives = 49/112 (43%), Gaps = 20/112 (17%)
Query: 29 RVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKD 88
RVL++ + G++V + G++ R+ G+ FL + D S +QV+
Sbjct: 2 RVLVRDL-------KAHVGQEVELLGFLHWRRDLGR--IQFLLLRDRSG--VVQVVTGGL 50
Query: 89 VADLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIP 140
+L + + V G++ + +E++ ++V ++ PA P P
Sbjct: 51 -----KLPLPESALRVRGLVVENAKAP-GGLEVQAKEVE---VLSPALEPTP 93
>d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS)
{Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Length = 335
Score = 53.8 bits (128), Expect = 1e-08
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 158 RTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQ 206
R + A+ +IR+++ A F + GF+ IHTP I + EG E+F
Sbjct: 26 RRPEVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATEGGTELFP 74
>d1eova1 b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspRS)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 134
Score = 49.7 bits (118), Expect = 3e-08
Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 16/108 (14%)
Query: 29 RVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVD-- 86
RV + A + ++V V R+QG + AFL + + V +
Sbjct: 23 RVKFVDLDE-----AKDSDKEVLFRARVHNTRQQGA-TLAFLTLRQQASLIQGLVKANKE 76
Query: 87 ----KDVADLGQLVPTGTCVYVEGMLKNPPEGTK----QKIELRVQKV 126
K++ + + V V G++K E K Q +E+ + K+
Sbjct: 77 GTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQNLEIHITKI 124
>d1l0wa1 b.40.4.1 (A:1-104) Aspartyl-tRNA synthetase (AspRS)
{Thermus thermophilus, AspRS-1 [TaxId: 274]}
Length = 104
Score = 43.5 bits (102), Expect = 3e-06
Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 6/85 (7%)
Query: 46 AGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVE 105
G +V + GWV R+ G FL++ D L + V V +
Sbjct: 15 VGEEVVLEGWVNRRRDLGG--LIFLDLRDREGLVQLVAHPASPAYATAERVRPEWVVRAK 72
Query: 106 GMLKNPPEGTKQ----KIELRVQKV 126
G+++ PE + ++E+ + +
Sbjct: 73 GLVRLRPEPNPRLATGRVEVELSAL 97
>d1c0aa1 b.40.4.1 (A:1-106) Aspartyl-tRNA synthetase (AspRS)
{Escherichia coli [TaxId: 562]}
Length = 106
Score = 41.2 bits (96), Expect = 2e-05
Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 9/89 (10%)
Query: 45 LAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA-DLGQLVPTGTCVY 103
G+QV + GWV R+ G F+++ D + D+ A L + C+
Sbjct: 13 HVGQQVTLCGWVNRRRDLGS--LIFIDMRDREGIVQVFFDPDRADALKLASELRNEFCIQ 70
Query: 104 VEGMLKNPPEGTKQK------IELRVQKV 126
V G ++ E + IE+ +
Sbjct: 71 VTGTVRARDEKNINRDMATGEIEVLASSL 99
>d1d2da_ a.16.1.3 (A:) Multifunctional Glu-Pro-tRNA synthase (EPRS)
second repeated element {Chinese hamster (Cricetulus
griseus) [TaxId: 10029]}
Length = 56
Score = 34.3 bits (79), Expect = 0.001
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 239 IKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGI 286
I +GE V KLK++KA + ++ +V L K + + PG+
Sbjct: 6 IAAQGEVVRKLKAEKAPKAKVTEAVECLLSLKAEYKEKTG-KEYVPGL 52
>d1fyja_ a.16.1.3 (A:) Multifunctional Glu-Pro-tRNA synthase (EPRS)
second repeated element {Human (Homo sapiens) [TaxId:
9606]}
Length = 57
Score = 33.9 bits (78), Expect = 0.002
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 239 IKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIP 287
+ +G+ V +LK+ KA +E + A+V +L K + + KPG P
Sbjct: 9 VAVQGDVVRELKAKKAPKEDVDAAVKQLLSLKAEYKEKTG-QEYKPGNP 56
>d1r6ta1 a.16.1.3 (A:7-60) N-terminal domain of eukaryotic
tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 54
Score = 32.0 bits (73), Expect = 0.009
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 239 IKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKL 276
I +GE V LK+ A ++ I ++V L K +
Sbjct: 10 IATQGELVRSLKAGNASKDEIDSAVKMLVSLKMSYKAA 47
>d2a9da1 b.1.18.6 (A:344-466) Sulfite oxidase, C-terminal domain
{Chicken (Gallus gallus) [TaxId: 9031]}
Length = 123
Score = 28.0 bits (62), Expect = 0.74
Identities = 8/32 (25%), Positives = 18/32 (56%)
Query: 32 IKSILTRPDGGAGLAGRQVRVGGWVKTGREQG 63
++S +T+P GA + ++ V G+ +G +
Sbjct: 4 VQSAVTQPRPGAAVPPGELTVKGYAWSGGGRE 35
>d1ogpa1 b.1.18.6 (A:263-389) Sulfite oxidase, C-terminal domain
{Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 127
Score = 26.9 bits (59), Expect = 1.9
Identities = 5/32 (15%), Positives = 15/32 (46%)
Query: 32 IKSILTRPDGGAGLAGRQVRVGGWVKTGREQG 63
++S + + + +V + G+ +G +G
Sbjct: 4 VQSAICSVEDVQMVKPGKVSIKGYAVSGGGRG 35
>d1xb2b1 a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts), N-terminal
domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}
Length = 56
Score = 25.0 bits (55), Expect = 3.1
Identities = 3/26 (11%), Positives = 12/26 (46%)
Query: 228 SEADIEAAKLVIKEKGEAVAKLKSDK 253
D++ A+ + ++ + K+ +
Sbjct: 29 CGGDLKQAESWLHKQAQKEGWSKAAR 54
>d1ki1b1 a.87.1.1 (B:1229-1438) GEF of intersectin {Human (Homo
sapiens) [TaxId: 9606]}
Length = 210
Score = 27.0 bits (59), Expect = 3.1
Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 14/63 (22%)
Query: 216 KLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAK 275
+ K +++N P + D K A+ K + + + V E + KEN +
Sbjct: 159 LIIKNILENTPENHPDHSHLK-------HALEKAEE-------LCSQVNEGVREKENSDR 204
Query: 276 LEE 278
LE
Sbjct: 205 LEW 207
>d1j6qa_ b.40.9.1 (A:) Heme chaperone CcmE {Shewanella putrefaciens
[TaxId: 24]}
Length = 100
Score = 25.7 bits (56), Expect = 3.8
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 8/68 (11%)
Query: 46 AGRQVRVGGWVKTG---REQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCV 102
AG+++RVGG V G R+ F + + V D + DL + G +
Sbjct: 25 AGQRIRVGGMVTVGSMVRDPNSLHVQFAVHDS--LGGEILVTYDDLLPDLFR---EGQGI 79
Query: 103 YVEGMLKN 110
+G+L
Sbjct: 80 VAQGVLGE 87
>d1aipc1 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-terminal
domain {Thermus thermophilus [TaxId: 274]}
Length = 52
Score = 24.2 bits (53), Expect = 5.8
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 228 SEADIEAAKLVIKEKGEAVAKLKSDK 253
+ D E A +++E+G A K+D+
Sbjct: 27 AGWDEEKAVQLLRERGAMKAAKKADR 52
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.382
Gapped
Lambda K H
0.267 0.0620 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,283,687
Number of extensions: 60400
Number of successful extensions: 190
Number of sequences better than 10.0: 1
Number of HSP's gapped: 186
Number of HSP's successfully gapped: 34
Length of query: 359
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 273
Effective length of database: 1,226,816
Effective search space: 334920768
Effective search space used: 334920768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.4 bits)