BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018231
(359 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OU5|A Chain A, Human Mitochondrial Serine Hydroxymethyltransferase 2
Length = 490
Score = 425 bits (1093), Expect = e-119, Method: Compositional matrix adjust.
Identities = 195/292 (66%), Positives = 239/292 (81%), Gaps = 1/292 (0%)
Query: 31 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYI 90
DPE+ ++++ EK RQ +GLELI SENF S + ++A+GS + NKYSEGYPG RYYGG E +
Sbjct: 39 DPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVV 98
Query: 91 DMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHL 150
D E LCQ+RALEAF LDP +WGVNVQ SGSP+N VYTALL+PHDRIM LDLP GGHL
Sbjct: 99 DEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHL 158
Query: 151 SHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLY 210
+HGY +D K+ISA SIFFE+MPY+LN TG IDY+QL +A LFRP+LI+AG SAYARL
Sbjct: 159 THGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSAYARLI 218
Query: 211 DYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFF 270
DY R+R+VC++ KA +LADMAHISGLVAA VIPSPF++AD+VTTTTHK+LRG R +IF+
Sbjct: 219 DYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGARSGLIFY 278
Query: 271 RKGVKEIN-KQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCT 321
RKGVK ++ K G+E+ Y +E++IN AVFP LQGGPHNH I +AVALKQ CT
Sbjct: 279 RKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACT 330
>pdb|1BJ4|A Chain A, Recombinant Serine Hydroxymethyltransferase (human)
Length = 470
Score = 400 bits (1029), Expect = e-112, Method: Compositional matrix adjust.
Identities = 196/301 (65%), Positives = 240/301 (79%), Gaps = 1/301 (0%)
Query: 23 LNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGAR 82
L PL+ D E+ +II+ E RQ GLELI SENF S +V++A+GS + NKYSEGYPG R
Sbjct: 12 LAQPLKDSDVEVYNIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQR 71
Query: 83 YYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMAL 142
YYGG E+ID E+LCQKRAL+A++LDP+ WGVNVQ SGSP+NF VYTAL++PH RIM L
Sbjct: 72 YYGGTEFIDELETLCQKRALQAYKLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGL 131
Query: 143 DLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG 202
DLP GGHL+HG+ TD KKISA SIFFE+MPY++N TGYI+YDQLE++A LF PKLI+AG
Sbjct: 132 DLPDGGHLTHGFMTDKKKISATSIFFESMPYKVNPDTGYINYDQLEENARLFHPKLIIAG 191
Query: 203 ASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRG 262
S Y+R +Y R+RK+ ++ A ++ADMAHISGLVAAGV+PSPFE+ VVTTTTHK+LRG
Sbjct: 192 TSCYSRNLEYARLRKIADENGAYLMADMAHISGLVAAGVVPSPFEHCHVVTTTTHKTLRG 251
Query: 263 PRGAMIFFRKGVKEIN-KQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCT 321
R MIF+RKGVK ++ GKE+ Y+ E IN AVFPGLQGGPHNH I G+AVALKQ T
Sbjct: 252 CRAGMIFYRKGVKSVDPATGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMT 311
Query: 322 L 322
L
Sbjct: 312 L 312
>pdb|1LS3|B Chain B, Crystal Structure Of The Complex Between Rabbit Cytosolic
Serine Hydroxymethyltransferase And
Triglu-5-Formyl-Tetrahydrofolate
pdb|1LS3|D Chain D, Crystal Structure Of The Complex Between Rabbit Cytosolic
Serine Hydroxymethyltransferase And
Triglu-5-Formyl-Tetrahydrofolate
pdb|1LS3|A Chain A, Crystal Structure Of The Complex Between Rabbit Cytosolic
Serine Hydroxymethyltransferase And
Triglu-5-Formyl-Tetrahydrofolate
pdb|1LS3|C Chain C, Crystal Structure Of The Complex Between Rabbit Cytosolic
Serine Hydroxymethyltransferase And
Triglu-5-Formyl-Tetrahydrofolate
Length = 483
Score = 397 bits (1019), Expect = e-111, Method: Compositional matrix adjust.
Identities = 197/318 (61%), Positives = 243/318 (76%), Gaps = 4/318 (1%)
Query: 8 AVYEKEKNGVTWP---KQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQ 64
AV ++ W + L PL+ D E+ DII+ E RQ GLELI SENF S +V++
Sbjct: 3 AVNGAPRDAALWSSHEQMLAQPLKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLE 62
Query: 65 AVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPS 124
A+GS + NKYSEGYPG RYYGG E+ID E+LCQKRAL+A+ LDP+ WGVNVQ SGSP+
Sbjct: 63 ALGSCLNNKYSEGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPA 122
Query: 125 NFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDY 184
NF VYTAL++PH RIM LDLP GGHL+HG+ TD KKISA SIFFE+M Y++N TGYIDY
Sbjct: 123 NFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDY 182
Query: 185 DQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPS 244
D+LE++A LF PKLI+AG S Y+R DY R+RK+ ++ A ++ADMAHISGLV AGV+PS
Sbjct: 183 DRLEENARLFHPKLIIAGTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPS 242
Query: 245 PFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEIN-KQGKEVFYDYEEKINQAVFPGLQGG 303
PFE+ VVTTTTHK+LRG R MIF+R+GV+ ++ K GKE+ Y+ E IN AVFPGLQGG
Sbjct: 243 PFEHCHVVTTTTHKTLRGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGG 302
Query: 304 PHNHTITGLAVALKQVCT 321
PHNH I G+AVALKQ T
Sbjct: 303 PHNHAIAGVAVALKQAMT 320
>pdb|1CJ0|A Chain A, Crystal Structure Of Rabbit Cytosolic Serine
Hydroxymethyltransferase At 2.8 Angstrom Resolution
pdb|1CJ0|B Chain B, Crystal Structure Of Rabbit Cytosolic Serine
Hydroxymethyltransferase At 2.8 Angstrom Resolution
Length = 470
Score = 395 bits (1016), Expect = e-110, Method: Compositional matrix adjust.
Identities = 194/302 (64%), Positives = 238/302 (78%), Gaps = 1/302 (0%)
Query: 21 KQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPG 80
+ L PL+ D E+ DII+ E RQ GLELI SENF S +V++A+GS + NKYSEGYPG
Sbjct: 6 QMLAQPLKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPG 65
Query: 81 ARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIM 140
RYYGG E+ID E+LCQKRAL+A+ LDP+ WGVNVQ SGSP+NF VYTAL++PH RIM
Sbjct: 66 QRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIM 125
Query: 141 ALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIV 200
LDLP GGHL+HG+ TD KKISA SIFFE+M Y++N TGYIDYD+LE++A LF PKLI+
Sbjct: 126 GLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLII 185
Query: 201 AGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSL 260
AG S Y+R DY R+RK+ ++ A ++ADMAHISGLV AGV+PSPFE+ VVTTTTHK+L
Sbjct: 186 AGTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTL 245
Query: 261 RGPRGAMIFFRKGVKEIN-KQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQV 319
RG R MIF+R+GV+ ++ K GKE+ Y+ E IN AVFPGLQGGPHNH I G+AVALKQ
Sbjct: 246 RGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQA 305
Query: 320 CT 321
T
Sbjct: 306 MT 307
>pdb|1RVU|A Chain A, E75q Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase
pdb|1RVU|B Chain B, E75q Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase
pdb|1RVY|A Chain A, E75q Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase, Complex With Glycine
pdb|1RVY|B Chain B, E75q Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase, Complex With Glycine
Length = 483
Score = 395 bits (1015), Expect = e-110, Method: Compositional matrix adjust.
Identities = 196/318 (61%), Positives = 243/318 (76%), Gaps = 4/318 (1%)
Query: 8 AVYEKEKNGVTWP---KQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQ 64
AV ++ W + L PL+ D E+ DII+ E RQ GLELI SENF S +V++
Sbjct: 3 AVNGAPRDAALWSSHEQMLAQPLKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLE 62
Query: 65 AVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPS 124
A+GS + NKYS+GYPG RYYGG E+ID E+LCQKRAL+A+ LDP+ WGVNVQ SGSP+
Sbjct: 63 ALGSCLNNKYSQGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPA 122
Query: 125 NFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDY 184
NF VYTAL++PH RIM LDLP GGHL+HG+ TD KKISA SIFFE+M Y++N TGYIDY
Sbjct: 123 NFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDY 182
Query: 185 DQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPS 244
D+LE++A LF PKLI+AG S Y+R DY R+RK+ ++ A ++ADMAHISGLV AGV+PS
Sbjct: 183 DRLEENARLFHPKLIIAGTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPS 242
Query: 245 PFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEIN-KQGKEVFYDYEEKINQAVFPGLQGG 303
PFE+ VVTTTTHK+LRG R MIF+R+GV+ ++ K GKE+ Y+ E IN AVFPGLQGG
Sbjct: 243 PFEHCHVVTTTTHKTLRGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGG 302
Query: 304 PHNHTITGLAVALKQVCT 321
PHNH I G+AVALKQ T
Sbjct: 303 PHNHAIAGVAVALKQAMT 320
>pdb|1RV3|A Chain A, E75l Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase, Complex With Glycine
pdb|1RV4|A Chain A, E75l Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase
pdb|1RV4|B Chain B, E75l Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase
pdb|1RV3|B Chain B, E75l Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase, Complex With Glycine
Length = 483
Score = 394 bits (1011), Expect = e-110, Method: Compositional matrix adjust.
Identities = 196/318 (61%), Positives = 242/318 (76%), Gaps = 4/318 (1%)
Query: 8 AVYEKEKNGVTWP---KQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQ 64
AV ++ W + L PL+ D E+ DII+ E RQ GLELI SENF S +V++
Sbjct: 3 AVNGAPRDAALWSSHEQMLAQPLKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLE 62
Query: 65 AVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPS 124
A+GS + NKYS GYPG RYYGG E+ID E+LCQKRAL+A+ LDP+ WGVNVQ SGSP+
Sbjct: 63 ALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPA 122
Query: 125 NFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDY 184
NF VYTAL++PH RIM LDLP GGHL+HG+ TD KKISA SIFFE+M Y++N TGYIDY
Sbjct: 123 NFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDY 182
Query: 185 DQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPS 244
D+LE++A LF PKLI+AG S Y+R DY R+RK+ ++ A ++ADMAHISGLV AGV+PS
Sbjct: 183 DRLEENARLFHPKLIIAGTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPS 242
Query: 245 PFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEIN-KQGKEVFYDYEEKINQAVFPGLQGG 303
PFE+ VVTTTTHK+LRG R MIF+R+GV+ ++ K GKE+ Y+ E IN AVFPGLQGG
Sbjct: 243 PFEHCHVVTTTTHKTLRGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGG 302
Query: 304 PHNHTITGLAVALKQVCT 321
PHNH I G+AVALKQ T
Sbjct: 303 PHNHAIAGVAVALKQAMT 320
>pdb|1EJI|A Chain A, Recombinant Serine Hydroxymethyltransferase (Mouse)
pdb|1EJI|B Chain B, Recombinant Serine Hydroxymethyltransferase (Mouse)
pdb|1EJI|C Chain C, Recombinant Serine Hydroxymethyltransferase (Mouse)
pdb|1EJI|D Chain D, Recombinant Serine Hydroxymethyltransferase (Mouse)
Length = 478
Score = 387 bits (995), Expect = e-108, Method: Compositional matrix adjust.
Identities = 193/313 (61%), Positives = 237/313 (75%), Gaps = 4/313 (1%)
Query: 13 EKNGVTWP---KQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSV 69
+++ W K L+ PL+ D E+ II+ E RQ GLELI SENF S +V++A+GS
Sbjct: 3 DRDATLWASHEKXLSQPLKDSDAEVYSIIKKESNRQRVGLELIASENFASRAVLEALGSS 62
Query: 70 MTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVY 129
+ NKYSEGYPG RYYGG E+ID E LCQKRAL+A+ LDP+ WGVNVQ SGSP+NF VY
Sbjct: 63 LNNKYSEGYPGQRYYGGTEFIDELEXLCQKRALQAYHLDPQCWGVNVQPYSGSPANFAVY 122
Query: 130 TALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEK 189
TAL++PH RI LDLP GGHL+HG+ TD KKISA SIFFE+ PY++ TGYI+YDQLE+
Sbjct: 123 TALVEPHGRIXGLDLPDGGHLTHGFXTDKKKISATSIFFESXPYKVYPETGYINYDQLEE 182
Query: 190 SATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYA 249
+A+LF PKLI+AG S Y+R DY R+RK+ + A + AD AHISGLVAAGV+PSPFE+
Sbjct: 183 NASLFHPKLIIAGTSCYSRNLDYARLRKIADDNGAYLXADXAHISGLVAAGVVPSPFEHC 242
Query: 250 DVVTTTTHKSLRGPRGAMIFFRKGVKEIN-KQGKEVFYDYEEKINQAVFPGLQGGPHNHT 308
VVTTTTHK+LRG R IF+RKGV+ ++ K GKE +Y+ E IN AVFPGLQGGPHNH
Sbjct: 243 HVVTTTTHKTLRGCRAGXIFYRKGVRSVDPKTGKETYYELESLINSAVFPGLQGGPHNHA 302
Query: 309 ITGLAVALKQVCT 321
I G+AVALKQ T
Sbjct: 303 IAGVAVALKQAXT 315
>pdb|3PGY|A Chain A, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant.
pdb|3PGY|B Chain B, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant.
pdb|3PGY|C Chain C, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant.
pdb|3PGY|D Chain D, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant
Length = 415
Score = 252 bits (643), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 130/288 (45%), Positives = 184/288 (63%), Gaps = 23/288 (7%)
Query: 31 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYI 90
D IA+ IE E RQ +ELI SENF S +VM+A GSV+TNKY+EGYPG RYYGG E++
Sbjct: 11 DKVIAEAIEREFQRQNSNIELIASENFVSEAVMEAQGSVLTNKYAEGYPGRRYYGGCEFV 70
Query: 91 DMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHL 150
D+ ES+ RA F + VNVQ SG +N VY L+ D ++ ++L HGGHL
Sbjct: 71 DVTESIAIDRAKALFGAEH----VNVQPHSGPQANMAVYLVALEMGDTVLGMNLSHGGHL 126
Query: 151 SHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLY 210
+HG ++ F+ + Y +++ T I+YD++ K A +PKLIVAGASAY+R
Sbjct: 127 THG-----APVNFSGKFYNFVEYGVDKDTERINYDEVRKLALEHKPKLIVAGASAYSRTI 181
Query: 211 DYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFF 270
D+++ +++ ++ A ++ DMAHI+GLVAAG+ P+P EYAD VTTTTHK+LRGPRG MI
Sbjct: 182 DFKKFKEIADEVNAKLMVDMAHIAGLVAAGLHPNPVEYADFVTTTTHKTLRGPRGGMILC 241
Query: 271 RKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQ 318
++ +Y++ I++ +FPG+QGGP H I AVA +
Sbjct: 242 KE--------------EYKKDIDKTIFPGIQGGPLEHVIAAKAVAFGE 275
>pdb|1KKJ|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From
B.Stearothermophilus
pdb|1KKP|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Serine
pdb|1KL1|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Glycine
pdb|1KL2|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Glycine And 5-formyl Tetrahydrofolate
pdb|1KL2|B Chain B, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Glycine And 5-formyl Tetrahydrofolate
Length = 419
Score = 251 bits (640), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 128/288 (44%), Positives = 183/288 (63%), Gaps = 23/288 (7%)
Query: 31 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYI 90
DP++ IE E+ RQ +ELI SENF S +VM+A GSV+TNKY+EGYPG RYYGG EY+
Sbjct: 8 DPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYV 67
Query: 91 DMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHL 150
D+ E L ++RA + F + NVQ SG+ +N VY +L+ D ++ ++L HGGHL
Sbjct: 68 DIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHL 123
Query: 151 SHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLY 210
+HG ++ + + + Y ++ T IDYD + + A L RPKLIVA ASAY R+
Sbjct: 124 THG-----SPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAYPRII 178
Query: 211 DYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFF 270
D+ + R++ ++ A ++ DMAHI+GLVAAG+ P+P YA VTTTTHK+LRGPRG MI
Sbjct: 179 DFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMILC 238
Query: 271 RKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQ 318
++ + ++I++A+FPG+QGGP H I AVA +
Sbjct: 239 QE--------------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGE 272
>pdb|2VMN|A Chain A, Crystal Structure Of N341absshmt Internal Aldimine
pdb|2VMO|A Chain A, Crystal Structure Of N341absshmt Gly External Aldimine
pdb|2VMP|A Chain A, Crystal Structure Of N341absshmt L-Ser External Aldimine
pdb|2VMQ|A Chain A, Structure Of N341absshmt Crystallized In The Presence Of
L- Allo-Thr
Length = 405
Score = 250 bits (639), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 128/288 (44%), Positives = 183/288 (63%), Gaps = 23/288 (7%)
Query: 31 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYI 90
DP++ IE E+ RQ +ELI SENF S +VM+A GSV+TNKY+EGYPG RYYGG EY+
Sbjct: 8 DPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYV 67
Query: 91 DMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHL 150
D+ E L ++RA + F + NVQ SG+ +N VY +L+ D ++ ++L HGGHL
Sbjct: 68 DIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHL 123
Query: 151 SHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLY 210
+HG ++ + + + Y ++ T IDYD + + A L RPKLIVA ASAY R+
Sbjct: 124 THG-----SPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAYPRII 178
Query: 211 DYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFF 270
D+ + R++ ++ A ++ DMAHI+GLVAAG+ P+P YA VTTTTHK+LRGPRG MI
Sbjct: 179 DFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMILC 238
Query: 271 RKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQ 318
++ + ++I++A+FPG+QGGP H I AVA +
Sbjct: 239 QE--------------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGE 272
>pdb|2VMV|A Chain A, Crystal Structure Of F351gbsshmt Internal Aldimine
pdb|2VMX|A Chain A, Crystal Structure Of F351gbsshmt In Complex With
L-Allo-Thr
pdb|2VMY|A Chain A, Crystal Structure Of F351gbsshmt In Complex With Gly And
Fthf
pdb|2VMY|B Chain B, Crystal Structure Of F351gbsshmt In Complex With Gly And
Fthf
pdb|2VMW|A Chain A, Crystal Structure Of F351gbsshmt In Complex With L-Ser
pdb|2VMZ|A Chain A, Crystal Structure Of F351gbsshmt In Complex With Gly
Length = 405
Score = 250 bits (639), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 128/288 (44%), Positives = 183/288 (63%), Gaps = 23/288 (7%)
Query: 31 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYI 90
DP++ IE E+ RQ +ELI SENF S +VM+A GSV+TNKY+EGYPG RYYGG EY+
Sbjct: 8 DPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYV 67
Query: 91 DMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHL 150
D+ E L ++RA + F + NVQ SG+ +N VY +L+ D ++ ++L HGGHL
Sbjct: 68 DIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHL 123
Query: 151 SHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLY 210
+HG ++ + + + Y ++ T IDYD + + A L RPKLIVA ASAY R+
Sbjct: 124 THG-----SPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAYPRII 178
Query: 211 DYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFF 270
D+ + R++ ++ A ++ DMAHI+GLVAAG+ P+P YA VTTTTHK+LRGPRG MI
Sbjct: 179 DFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMILC 238
Query: 271 RKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQ 318
++ + ++I++A+FPG+QGGP H I AVA +
Sbjct: 239 QE--------------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGE 272
>pdb|1YJS|A Chain A, K226q Mutant Of Serine Hydroxymethyltransferase From B.
Stearothermophilus, Complex With Glycine
Length = 419
Score = 249 bits (636), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 127/288 (44%), Positives = 183/288 (63%), Gaps = 23/288 (7%)
Query: 31 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYI 90
DP++ IE E+ RQ +ELI SENF S +VM+A GSV+TNKY+EGYPG RYYGG EY+
Sbjct: 8 DPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYV 67
Query: 91 DMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHL 150
D+ E L ++RA + F + NVQ SG+ +N VY +L+ D ++ ++L HGGHL
Sbjct: 68 DIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHL 123
Query: 151 SHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLY 210
+HG ++ + + + Y ++ T IDYD + + A L RPKLIVA ASAY R+
Sbjct: 124 THG-----SPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAYPRII 178
Query: 211 DYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFF 270
D+ + R++ ++ A ++ DMAHI+GLVAAG+ P+P YA VTTTTH++LRGPRG MI
Sbjct: 179 DFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHQTLRGPRGGMILC 238
Query: 271 RKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQ 318
++ + ++I++A+FPG+QGGP H I AVA +
Sbjct: 239 QE--------------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGE 272
>pdb|2VI8|A Chain A, Crystal Structure Of S172absshmt Internal Aldimine
pdb|2VIB|A Chain A, Crystal Structure Of S172absshmt Obtained In The Presence
Of L-Allo-Thr
pdb|2VIA|A Chain A, Crystal Structure Of S172absshmt L-Serine External
Aldimine
pdb|2VI9|A Chain A, Crystal Structure Of S172absshmt Glycine External Aldimine
Length = 405
Score = 249 bits (636), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 127/288 (44%), Positives = 183/288 (63%), Gaps = 23/288 (7%)
Query: 31 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYI 90
DP++ IE E+ RQ +ELI SENF S +VM+A GSV+TNKY+EGYPG RYYGG EY+
Sbjct: 8 DPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYV 67
Query: 91 DMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHL 150
D+ E L ++RA + F + NVQ SG+ +N VY +L+ D ++ ++L HGGHL
Sbjct: 68 DIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHL 123
Query: 151 SHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLY 210
+HG ++ + + + Y ++ T IDYD + + A L RPKLIVA A+AY R+
Sbjct: 124 THG-----SPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAAAAYPRII 178
Query: 211 DYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFF 270
D+ + R++ ++ A ++ DMAHI+GLVAAG+ P+P YA VTTTTHK+LRGPRG MI
Sbjct: 179 DFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMILC 238
Query: 271 RKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQ 318
++ + ++I++A+FPG+QGGP H I AVA +
Sbjct: 239 QE--------------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGE 272
>pdb|2W7D|A Chain A, Crystal Structure Of Y51fbsshmt Internal Aldimine
pdb|2W7E|A Chain A, Crystal Structure Of Y51fbsshmt Obtained In The Presence
Of Glycine
pdb|2W7F|A Chain A, Crystal Structure Of Y51fbsshmt L-Ser External Aldimine
pdb|2W7G|A Chain A, Crystal Structure Of Y51fbsshmt L-Allo-Threonine Extrnal
Aldimine
pdb|2W7H|A Chain A, Crystal Structure Of Y51fbsshmt Obtained In The Presence
Of Gly And 5-Formyl Tetrahydrofolate
Length = 405
Score = 249 bits (636), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 127/288 (44%), Positives = 183/288 (63%), Gaps = 23/288 (7%)
Query: 31 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYI 90
DP++ IE E+ RQ +ELI SENF S +VM+A GSV+TNK++EGYPG RYYGG EY+
Sbjct: 8 DPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKFAEGYPGRRYYGGCEYV 67
Query: 91 DMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHL 150
D+ E L ++RA + F + NVQ SG+ +N VY +L+ D ++ ++L HGGHL
Sbjct: 68 DIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHL 123
Query: 151 SHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLY 210
+HG ++ + + + Y ++ T IDYD + + A L RPKLIVA ASAY R+
Sbjct: 124 THG-----SPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAYPRII 178
Query: 211 DYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFF 270
D+ + R++ ++ A ++ DMAHI+GLVAAG+ P+P YA VTTTTHK+LRGPRG MI
Sbjct: 179 DFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMILC 238
Query: 271 RKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQ 318
++ + ++I++A+FPG+QGGP H I AVA +
Sbjct: 239 QE--------------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGE 272
>pdb|2VGS|A Chain A, Crystal Structure Of E53qbsshmt Internal Aldimine
pdb|2VGT|A Chain A, Crystal Structure Of E53qbsshmt With Glycine
pdb|2VGV|A Chain A, Crystal Structure Of E53qbsshmt Obtained In The Presence
Of L-Allo-Threonine
pdb|2VGW|A Chain A, Crystal Structure Of E53qbsshmt Obtained In The Presence
Of Glycine And 5-Fomyl Tetrahydrofolate
pdb|2VGU|A Chain A, Crystal Structure Of E53qbsshmt With L-Serine
Length = 407
Score = 249 bits (636), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 127/288 (44%), Positives = 183/288 (63%), Gaps = 23/288 (7%)
Query: 31 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYI 90
DP++ IE E+ RQ +ELI SENF S +VM+A GSV+TNKY++GYPG RYYGG EY+
Sbjct: 8 DPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAQGYPGRRYYGGCEYV 67
Query: 91 DMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHL 150
D+ E L ++RA + F + NVQ SG+ +N VY +L+ D ++ ++L HGGHL
Sbjct: 68 DIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHL 123
Query: 151 SHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLY 210
+HG ++ + + + Y ++ T IDYD + + A L RPKLIVA ASAY R+
Sbjct: 124 THG-----SPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAYPRII 178
Query: 211 DYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFF 270
D+ + R++ ++ A ++ DMAHI+GLVAAG+ P+P YA VTTTTHK+LRGPRG MI
Sbjct: 179 DFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMILC 238
Query: 271 RKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQ 318
++ + ++I++A+FPG+QGGP H I AVA +
Sbjct: 239 QE--------------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGE 272
>pdb|1YJY|A Chain A, K226m Mutant Of Serine Hydroxymethyltransferase From B.
Stearothermophilus, Complex With Serine
pdb|1YJZ|A Chain A, K226m Mutant Of Serine Hydroxymethyltransferase From B.
Stearothermophilus
Length = 419
Score = 248 bits (634), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 127/288 (44%), Positives = 182/288 (63%), Gaps = 23/288 (7%)
Query: 31 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYI 90
DP++ IE E+ RQ +ELI SENF S +VM+A GSV+TNKY+EGYPG RYYGG EY+
Sbjct: 8 DPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYV 67
Query: 91 DMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHL 150
D+ E L ++RA + F + NVQ SG+ +N VY +L+ D ++ ++L HGGHL
Sbjct: 68 DIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHL 123
Query: 151 SHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLY 210
+HG ++ + + + Y ++ T IDYD + + A L RPKLIVA ASAY R+
Sbjct: 124 THG-----SPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAYPRII 178
Query: 211 DYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFF 270
D+ + R++ ++ A ++ DMAHI+GLVAAG+ P+P YA VTTTTH +LRGPRG MI
Sbjct: 179 DFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHMTLRGPRGGMILC 238
Query: 271 RKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQ 318
++ + ++I++A+FPG+QGGP H I AVA +
Sbjct: 239 QE--------------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGE 272
>pdb|2W7I|A Chain A, Crystal Structure Of Y61absshmt Internal Aldimine
pdb|2W7J|A Chain A, Crystal Structure Of Y61absshmt Glycine External Aldimine
pdb|2W7K|A Chain A, Crystal Structure Of Y61absshmt L-Serine External Aldimine
pdb|2W7L|A Chain A, Crystal Structure Of Y61absshmt L-Allo-Threonine External
Aldimine
pdb|2W7M|A Chain A, Crystal Structure Of Y61absshmt Obtained In The Presence
Of Glycine And 5-Formyl Tetrahydrofolate
Length = 405
Score = 247 bits (630), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 127/288 (44%), Positives = 182/288 (63%), Gaps = 23/288 (7%)
Query: 31 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYI 90
DP++ IE E+ RQ +ELI SENF S +VM+A GSV+TNKY+EGYPG RY GG EY+
Sbjct: 8 DPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYAGGCEYV 67
Query: 91 DMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHL 150
D+ E L ++RA + F + NVQ SG+ +N VY +L+ D ++ ++L HGGHL
Sbjct: 68 DIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHL 123
Query: 151 SHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLY 210
+HG ++ + + + Y ++ T IDYD + + A L RPKLIVA ASAY R+
Sbjct: 124 THG-----SPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAYPRII 178
Query: 211 DYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFF 270
D+ + R++ ++ A ++ DMAHI+GLVAAG+ P+P YA VTTTTHK+LRGPRG MI
Sbjct: 179 DFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMILC 238
Query: 271 RKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQ 318
++ + ++I++A+FPG+QGGP H I AVA +
Sbjct: 239 QE--------------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGE 272
>pdb|2VMR|A Chain A, Crystal Structure Of Y60absshmt Internal Aldimine
pdb|2VMS|A Chain A, Crystal Structure Of Y60absshmt Crystallized In The
Presence Of Glycine
pdb|2VMT|A Chain A, Crystal Structure Of Y60absshmt L-Ser External Aldimine
pdb|2VMU|A Chain A, Crystal Structure Of Y60absshmt Crystallized In The
Presence Of L-Allo-Thr
Length = 405
Score = 247 bits (630), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 127/288 (44%), Positives = 182/288 (63%), Gaps = 23/288 (7%)
Query: 31 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYI 90
DP++ IE E+ RQ +ELI SENF S +VM+A GSV+TNKY+EGYPG R YGG EY+
Sbjct: 8 DPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRAYGGCEYV 67
Query: 91 DMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHL 150
D+ E L ++RA + F + NVQ SG+ +N VY +L+ D ++ ++L HGGHL
Sbjct: 68 DIVEELARERAKQLFGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHL 123
Query: 151 SHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLY 210
+HG ++ + + + Y ++ T IDYD + + A L RPKLIVA ASAY R+
Sbjct: 124 THG-----SPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAYPRII 178
Query: 211 DYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFF 270
D+ + R++ ++ A ++ DMAHI+GLVAAG+ P+P YA VTTTTHK+LRGPRG MI
Sbjct: 179 DFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMILC 238
Query: 271 RKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQ 318
++ + ++I++A+FPG+QGGP H I AVA +
Sbjct: 239 QE--------------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGE 272
>pdb|3N0L|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From
Campylobacter Jejuni
pdb|3N0L|B Chain B, Crystal Structure Of Serine Hydroxymethyltransferase From
Campylobacter Jejuni
Length = 417
Score = 246 bits (629), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 136/291 (46%), Positives = 182/291 (62%), Gaps = 23/291 (7%)
Query: 27 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGG 86
LE D EI D+ E RQ +GLE I SENFT V + GS++TNKY+EGYPG RYYGG
Sbjct: 6 LEXFDKEIFDLTNKELERQCEGLEXIASENFTLPEVXEVXGSILTNKYAEGYPGKRYYGG 65
Query: 87 NEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPH 146
E++D E+L +R + F K+ NVQ SGS +N VY AL+ P D+I+ DL H
Sbjct: 66 CEFVDEIETLAIERCKKLFNC---KF-ANVQPNSGSQANQGVYAALINPGDKILGXDLSH 121
Query: 147 GGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAY 206
GGHL+HG K+S+ +E+ Y + E G IDY+++ + A +PKLIV GASAY
Sbjct: 122 GGHLTHG-----AKVSSSGKXYESCFYGV-ELDGRIDYEKVREIAKKEKPKLIVCGASAY 175
Query: 207 ARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGA 266
AR+ D+ + R++ ++ A + AD+AHI+GLV AG PSPF YA VV++TTHK+LRGPRG
Sbjct: 176 ARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFPYAHVVSSTTHKTLRGPRGG 235
Query: 267 MIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALK 317
+I N + + +KIN A+FPG+QGGP H I AV K
Sbjct: 236 II-------XTNDE------ELAKKINSAIFPGIQGGPLXHVIAAKAVGFK 273
>pdb|1DFO|A Chain A, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli
Serine Hydroxymethyltransferase In Complex With Glycine
And 5-Formyl Tetrahydrofolate
pdb|1DFO|B Chain B, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli
Serine Hydroxymethyltransferase In Complex With Glycine
And 5-Formyl Tetrahydrofolate
pdb|1DFO|C Chain C, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli
Serine Hydroxymethyltransferase In Complex With Glycine
And 5-Formyl Tetrahydrofolate
pdb|1DFO|D Chain D, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli
Serine Hydroxymethyltransferase In Complex With Glycine
And 5-Formyl Tetrahydrofolate
Length = 417
Score = 246 bits (628), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 140/288 (48%), Positives = 187/288 (64%), Gaps = 21/288 (7%)
Query: 31 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYI 90
D E+ +E EK RQ + +ELI SEN+TS VMQA GS +TNKY+EGYPG RYYGG EY+
Sbjct: 12 DAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYV 71
Query: 91 DMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHL 150
D+ E L RA E F D NVQ SGS +NF VYTALL+P D ++ ++L HGGHL
Sbjct: 72 DIVEQLAIDRAKELFGADY----ANVQPHSGSQANFAVYTALLEPGDTVLGMNLAHGGHL 127
Query: 151 SHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLY 210
+HG ++ + +PY + ++TG+IDY LEK A +PK+I+ G SAY+ +
Sbjct: 128 THG-----SPVNFSGKLYNIVPYGI-DATGHIDYADLEKQAKEHKPKMIIGGFSAYSGVV 181
Query: 211 DYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFF 270
D+ ++R++ + A + DMAH++GLVAAGV P+P +A VVTTTTHK+L GPRG +I
Sbjct: 182 DWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLILA 241
Query: 271 RKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQ 318
+ G +E+ K K+N AVFPG QGGP H I G AVALK+
Sbjct: 242 KGGSEELYK-----------KLNSAVFPGGQGGPLMHVIAGKAVALKE 278
>pdb|2DKJ|A Chain A, Crystal Structure Of T.Th.Hb8 Serine
Hydroxymethyltransferase
pdb|2DKJ|B Chain B, Crystal Structure Of T.Th.Hb8 Serine
Hydroxymethyltransferase
Length = 407
Score = 245 bits (625), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 132/286 (46%), Positives = 180/286 (62%), Gaps = 22/286 (7%)
Query: 31 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYI 90
D + ++I E+ RQ +GLELI SENF S V +AVGSV+TNKY+EGYPGARYYGG E I
Sbjct: 8 DEALFELIALEEKRQREGLELIASENFVSKQVREAVGSVLTNKYAEGYPGARYYGGCEVI 67
Query: 91 DMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHL 150
D ESL +RA F W NVQ SGS +N VY AL++P D +M +DL GGHL
Sbjct: 68 DRVESLAIERAKALFG---AAWA-NVQPHSGSQANMAVYMALMEPGDTLMGMDLAAGGHL 123
Query: 151 SHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLY 210
+HG +++ ++ + Y + T ID +++ + A RPK+IVAGASAY R +
Sbjct: 124 THG-----SRVNFSGKLYKVVSYGVRPDTELIDLEEVRRLALEHRPKVIVAGASAYPRFW 178
Query: 211 DYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFF 270
D++ R++ ++ A ++ DMAH +GLVAAG+ P+P YA VVT+TTHK+LRGPRG +I
Sbjct: 179 DFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNPLPYAHVVTSTTHKTLRGPRGGLILS 238
Query: 271 RKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVAL 316
E+ K +I++ +FPG+QGGP H I G AVA
Sbjct: 239 ND--PELGK-----------RIDKLIFPGIQGGPLEHVIAGKAVAF 271
>pdb|1EQB|A Chain A, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of
Ternary Complex Between The Y65f Mutant Of E-Coli Serine
Hydroxymethyltransferase, Glycine And 5-Formyl
Tetrahydrofolate
pdb|1EQB|B Chain B, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of
Ternary Complex Between The Y65f Mutant Of E-Coli Serine
Hydroxymethyltransferase, Glycine And 5-Formyl
Tetrahydrofolate
pdb|1EQB|C Chain C, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of
Ternary Complex Between The Y65f Mutant Of E-Coli Serine
Hydroxymethyltransferase, Glycine And 5-Formyl
Tetrahydrofolate
pdb|1EQB|D Chain D, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of
Ternary Complex Between The Y65f Mutant Of E-Coli Serine
Hydroxymethyltransferase, Glycine And 5-Formyl
Tetrahydrofolate
Length = 417
Score = 245 bits (625), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 139/288 (48%), Positives = 187/288 (64%), Gaps = 21/288 (7%)
Query: 31 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYI 90
D E+ +E EK RQ + +ELI SEN+TS VMQA GS +TNKY+EGYPG RY+GG EY+
Sbjct: 12 DAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYFGGCEYV 71
Query: 91 DMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHL 150
D+ E L RA E F D NVQ SGS +NF VYTALL+P D ++ ++L HGGHL
Sbjct: 72 DIVEQLAIDRAKELFGADY----ANVQPHSGSQANFAVYTALLEPGDTVLGMNLAHGGHL 127
Query: 151 SHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLY 210
+HG ++ + +PY + ++TG+IDY LEK A +PK+I+ G SAY+ +
Sbjct: 128 THG-----SPVNFSGKLYNIVPYGI-DATGHIDYADLEKQAKEHKPKMIIGGFSAYSGVV 181
Query: 211 DYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFF 270
D+ ++R++ + A + DMAH++GLVAAGV P+P +A VVTTTTHK+L GPRG +I
Sbjct: 182 DWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLILA 241
Query: 271 RKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQ 318
+ G +E+ K K+N AVFPG QGGP H I G AVALK+
Sbjct: 242 KGGSEELYK-----------KLNSAVFPGGQGGPLMHVIAGKAVALKE 278
>pdb|3G8M|A Chain A, Serine Hydroxymethyltransferase Y55f Mutant
Length = 417
Score = 245 bits (625), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 139/288 (48%), Positives = 187/288 (64%), Gaps = 21/288 (7%)
Query: 31 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYI 90
D E+ +E EK RQ + +ELI SEN+TS VMQA GS +TNK++EGYPG RYYGG EY+
Sbjct: 12 DAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKFAEGYPGKRYYGGCEYV 71
Query: 91 DMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHL 150
D+ E L RA E F D NVQ SGS +NF VYTALL+P D ++ ++L HGGHL
Sbjct: 72 DIVEQLAIDRAKELFGADY----ANVQPHSGSQANFAVYTALLEPGDTVLGMNLAHGGHL 127
Query: 151 SHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLY 210
+HG ++ + +PY + ++TG+IDY LEK A +PK+I+ G SAY+ +
Sbjct: 128 THG-----SPVNFSGKLYNIVPYGI-DATGHIDYADLEKQAKEHKPKMIIGGFSAYSGVV 181
Query: 211 DYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFF 270
D+ ++R++ + A + DMAH++GLVAAGV P+P +A VVTTTTHK+L GPRG +I
Sbjct: 182 DWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLILA 241
Query: 271 RKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQ 318
+ G +E+ K K+N AVFPG QGGP H I G AVALK+
Sbjct: 242 KGGSEELYK-----------KLNSAVFPGGQGGPLMHVIAGKAVALKE 278
>pdb|3H7F|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From
Mycobacterium Tuberculosis
pdb|3H7F|B Chain B, Crystal Structure Of Serine Hydroxymethyltransferase From
Mycobacterium Tuberculosis
Length = 447
Score = 244 bits (623), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 134/302 (44%), Positives = 184/302 (60%), Gaps = 23/302 (7%)
Query: 20 PKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYP 79
P ++APL VDP+IA+++ E RQ LE+I SENF +V+QA GSV+TNKY+EG P
Sbjct: 19 PGSMSAPLAEVDPDIAELLAKELGRQRDTLEMIASENFVPRAVLQAQGSVLTNKYAEGLP 78
Query: 80 GARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRI 139
G RYYGG E++D+ E+L + RA F + NVQ SG+ +N V AL+ P +R+
Sbjct: 79 GRRYYGGCEHVDVVENLARDRAKALFGAE----FANVQPHSGAQANAAVLHALMSPGERL 134
Query: 140 MALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLI 199
+ LDL +GGHL+HG +++ +E Y ++ +T ID D + +A FRPK+I
Sbjct: 135 LGLDLANGGHLTHGM-----RLNFSGKLYENGFYGVDPATHLIDMDAVRATALEFRPKVI 189
Query: 200 VAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKS 259
+AG SAY R+ D+ R + ++ A +L DMAH +GLVAAG+ PSP +ADVV+TT H +
Sbjct: 190 IAGWSAYPRVLDFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPVPHADVVSTTVHXT 249
Query: 260 LRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQV 319
L G R +I + KQ Y + IN AVFPG QGGP H I G AVALK
Sbjct: 250 LGGGRSGLI--------VGKQ------QYAKAINSAVFPGQQGGPLMHVIAGKAVALKIA 295
Query: 320 CT 321
T
Sbjct: 296 AT 297
>pdb|3GBX|A Chain A, Serine Hydroxymethyltransferase From Salmonella
Typhimurium
pdb|3GBX|B Chain B, Serine Hydroxymethyltransferase From Salmonella
Typhimurium
Length = 420
Score = 230 bits (586), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 135/288 (46%), Positives = 178/288 (61%), Gaps = 21/288 (7%)
Query: 31 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYI 90
D E+ E EK RQ + +ELI SEN+TS V QA GS +TNKY+EGYPG RYYGG EY+
Sbjct: 15 DAELWQAXEQEKVRQEEHIELIASENYTSPRVXQAQGSQLTNKYAEGYPGKRYYGGCEYV 74
Query: 91 DMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHL 150
D+ E L RA E F D NVQ SGS +NF VYTALL+P D ++ +L GGHL
Sbjct: 75 DVVEQLAIDRAKELFGADY----ANVQPHSGSQANFAVYTALLQPGDTVLGXNLAQGGHL 130
Query: 151 SHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLY 210
+HG ++ + +PY ++ES G IDYD+ K A +PK I+ G SAY+ +
Sbjct: 131 THG-----SPVNFSGKLYNIVPYGIDES-GKIDYDEXAKLAKEHKPKXIIGGFSAYSGVV 184
Query: 211 DYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFF 270
D+ + R++ + A + D AH++GL+AAGV P+P +A VVTTTTHK+L GPRG +I
Sbjct: 185 DWAKXREIADSIGAYLFVDXAHVAGLIAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLILA 244
Query: 271 RKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQ 318
+ G +E+ K K+N AVFP QGGP H I G AVALK+
Sbjct: 245 KGGDEELYK-----------KLNSAVFPSAQGGPLXHVIAGKAVALKE 281
>pdb|3ECD|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From
Burkholderia Pseudomallei
pdb|3ECD|B Chain B, Crystal Structure Of Serine Hydroxymethyltransferase From
Burkholderia Pseudomallei
pdb|3ECD|C Chain C, Crystal Structure Of Serine Hydroxymethyltransferase From
Burkholderia Pseudomallei
pdb|3ECD|D Chain D, Crystal Structure Of Serine Hydroxymethyltransferase From
Burkholderia Pseudomallei
Length = 425
Score = 224 bits (571), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 128/291 (43%), Positives = 166/291 (57%), Gaps = 22/291 (7%)
Query: 31 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYI 90
D + I E RQ +ELI SEN S +V+ A GSV+TNKY+EGYPG RYYGG E+
Sbjct: 17 DASVRGAILKELERQQSQVELIASENIVSRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFA 76
Query: 91 DMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHL 150
D E+L +R F NVQ SG+ +N V AL KP D ++ + L GGHL
Sbjct: 77 DEVEALAIERVKRLF----NAGHANVQPHSGAQANGAVMLALAKPGDTVLGMSLDAGGHL 132
Query: 151 SHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLY 210
+HG K + +F + Y ++ T IDYDQ+E A +P LI+AG SAY R
Sbjct: 133 THG-----AKPALSGKWFNALQYGVSRDTMLIDYDQVEALAQQHKPSLIIAGFSAYPRKL 187
Query: 211 DYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFF 270
D+ R R + + A ++ DMAHI+G++AAG +P E+A VVT+TTHK+LRGPRG +
Sbjct: 188 DFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVEHAHVVTSTTHKTLRGPRGGFVLT 247
Query: 271 RKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCT 321
+EI K KIN AVFPGLQGGP H I G AVA + T
Sbjct: 248 ND--EEIAK-----------KINSAVFPGLQGGPLMHVIAGKAVAFGEALT 285
>pdb|2AEU|A Chain A, Mj0158, Apo Form
Length = 374
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 198 LIVAGASAYARLYDYERIRKVCNKQK---AIMLADMAHISGLVAAGVIPSPFEY-ADVVT 253
+I+ G++ ++ + E +KV N K AI+ D A + + P + AD+V
Sbjct: 144 VIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVV 203
Query: 254 TTTHKSLRGPRGAMIFFRK 272
T+T K + GPRG ++ +K
Sbjct: 204 TSTDKLMEGPRGGLLAGKK 222
>pdb|1WF9|A Chain A, Solution Structure Of A Novel Beta-Grasp Fold Like Domain
Of Hypothetical Protein (Arabidopsis Thaliana)
Length = 107
Score = 32.3 bits (72), Expect = 0.45, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 119 LSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQ 155
L+ SPS+F +T + P+ RI +L+L HG + Y+
Sbjct: 58 LAKSPSDFLAFTDMADPNLRISSLNLAHGSMVYLAYE 94
>pdb|2AEV|A Chain A, Mj0158, Nabh4-Reduced Form
Length = 374
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 198 LIVAGASAYARLYDYERIRKVCNKQK---AIMLADMAHISGLVAAGVIPSPFEY-ADVVT 253
+I+ G++ ++ + E +KV N K AI+ D A + + P + AD+V
Sbjct: 144 VIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVV 203
Query: 254 TTTHKSLRGPRGAMIFFRK 272
T+T + GPRG ++ +K
Sbjct: 204 TSTDXLMEGPRGGLLAGKK 222
>pdb|3PLS|A Chain A, Ron In Complex With Ligand Amp-Pnp
Length = 298
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 28 EVVDPEIADIIEHEKAR---QWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYY 84
+++D E + +H AR +W LE + + FT+ S + + G ++ + G P R+
Sbjct: 173 DILDREYYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHI 232
Query: 85 GGNEYIDMAESLCQKRAL 102
+ D+ L Q R L
Sbjct: 233 ---DPFDLTHFLAQGRRL 247
>pdb|2J3Z|A Chain A, Crystal Structure Of The Enzymatic Component C2-i Of The
C2-toxin From Clostridium Botulinum At Ph 6.1
pdb|2J3Z|B Chain B, Crystal Structure Of The Enzymatic Component C2-i Of The
C2-toxin From Clostridium Botulinum At Ph 6.1
pdb|2J3Z|C Chain C, Crystal Structure Of The Enzymatic Component C2-i Of The
C2-toxin From Clostridium Botulinum At Ph 6.1
pdb|2J3Z|D Chain D, Crystal Structure Of The Enzymatic Component C2-i Of The
C2-toxin From Clostridium Botulinum At Ph 6.1
pdb|2J3Z|E Chain E, Crystal Structure Of The Enzymatic Component C2-i Of The
C2-toxin From Clostridium Botulinum At Ph 6.1
pdb|2J3Z|F Chain F, Crystal Structure Of The Enzymatic Component C2-i Of The
C2-toxin From Clostridium Botulinum At Ph 6.1
Length = 431
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 26/115 (22%)
Query: 4 LPNEAVYEKEKNG--VTWPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVS 61
LP++ ++K++NG + ++LN E +D +W G E I + +F+S S
Sbjct: 308 LPSDFSFDKKENGEIIADKQKLN---EFID-------------KWTGKE-IENLSFSSTS 350
Query: 62 VMQAVGSVMTNKY------SEGYPGARYYGGNEYIDMAESLCQKRA-LEAFRLDP 109
+ S +++ SEG GA YG + + D E L K + + FR+ P
Sbjct: 351 LKSTPSSFSKSRFIFRLRLSEGAIGAFIYGFSGFQDEQEILLNKNSTFKIFRITP 405
>pdb|2J3V|A Chain A, Crystal Structure Of The Enzymatic Component C2-I Of The
C2- Toxin From Clostridium Botulinum At Ph 3.0
Length = 431
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 26/115 (22%)
Query: 4 LPNEAVYEKEKNG--VTWPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVS 61
LP++ ++K++NG + ++LN E +D +W G E I + +F+S S
Sbjct: 308 LPSDFSFDKKENGEIIADKQKLN---EFID-------------KWTGKE-IENLSFSSTS 350
Query: 62 VMQAVGSVMTNKY------SEGYPGARYYGGNEYIDMAESLCQKRA-LEAFRLDP 109
+ S +++ SEG GA YG + + D E L K + + FR+ P
Sbjct: 351 LKSTPSSFSKSRFIFRLRLSEGAIGAFIYGFSGFQDEQEILLNKNSTFKIFRITP 405
>pdb|2J3X|A Chain A, Crystal Structure Of The Enzymatic Component C2-I Of The
C2-Toxin From Clostridium Botulinum At Ph 3.0
(Mut-S361r)
Length = 431
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 26/115 (22%)
Query: 4 LPNEAVYEKEKNG--VTWPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVS 61
LP++ ++K++NG + ++LN E +D +W G E I + +F+S S
Sbjct: 308 LPSDFSFDKKENGEIIADKQKLN---EFID-------------KWTGKE-IENLSFSSTS 350
Query: 62 VMQAVGSVMTNKY------SEGYPGARYYGGNEYIDMAESLCQKRA-LEAFRLDP 109
+ S ++ SEG GA YG + + D E L K + + FR+ P
Sbjct: 351 LKSTPSSFSKRRFIFRLRLSEGAIGAFIYGFSGFQDEQEILLNKNSTFKIFRITP 405
>pdb|2HEL|A Chain A, Crystal Structure Of A Mutant Epha4 Kinase Domain (Y742a)
Length = 306
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 31/80 (38%), Gaps = 9/80 (11%)
Query: 31 DPEIADIIEHEKAR-QWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEY 89
DPE A K +W E I FTS S + + G VM S YG Y
Sbjct: 184 DPEAAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMS--------YGERPY 235
Query: 90 IDMAESLCQKRALEAFRLDP 109
DM+ K E +RL P
Sbjct: 236 WDMSNQDVIKAIEEGYRLPP 255
>pdb|2XYU|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With
Vuf 12058
Length = 285
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 31/80 (38%), Gaps = 9/80 (11%)
Query: 31 DPEIADIIEHEKAR-QWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEY 89
DPE A K +W E I FTS S + + G VM S YG Y
Sbjct: 163 DPEAAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMS--------YGERPY 214
Query: 90 IDMAESLCQKRALEAFRLDP 109
DM+ K E +RL P
Sbjct: 215 WDMSNQDVIKAIEEGYRLPP 234
>pdb|2Y6M|A Chain A, Crystal Structure Of Epha4 Kinase Domain
pdb|2Y6O|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With
Dasatinib
Length = 291
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 8/65 (12%)
Query: 45 QWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEA 104
+W E I FTS S + + G VM S YG Y DM+ K E
Sbjct: 184 RWTAPEAIAYRKFTSASDVWSYGIVMWEVMS--------YGERPYWDMSNQDVIKAIEEG 235
Query: 105 FRLDP 109
+RL P
Sbjct: 236 YRLPP 240
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,282,152
Number of Sequences: 62578
Number of extensions: 472003
Number of successful extensions: 1253
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1158
Number of HSP's gapped (non-prelim): 36
length of query: 359
length of database: 14,973,337
effective HSP length: 100
effective length of query: 259
effective length of database: 8,715,537
effective search space: 2257324083
effective search space used: 2257324083
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)