Query 018231
Match_columns 359
No_of_seqs 302 out of 2903
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 07:14:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018231.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018231hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2467 Glycine/serine hydroxy 100.0 8.6E-47 1.9E-51 336.8 21.3 305 19-323 13-318 (477)
2 COG0112 GlyA Glycine/serine hy 100.0 1.2E-45 2.5E-50 335.0 23.5 277 25-323 5-281 (413)
3 PLN02271 serine hydroxymethylt 100.0 5.8E-45 1.3E-49 349.8 25.4 303 21-323 123-432 (586)
4 PF00464 SHMT: Serine hydroxym 100.0 8.9E-45 1.9E-49 340.7 18.6 296 27-322 1-296 (399)
5 PLN03226 serine hydroxymethylt 100.0 4.1E-40 8.9E-45 320.7 30.1 309 14-322 2-310 (475)
6 PRK13580 serine hydroxymethylt 100.0 1.4E-38 3.1E-43 305.0 25.9 289 25-340 28-351 (493)
7 PTZ00094 serine hydroxymethylt 100.0 6.1E-37 1.3E-41 299.1 29.9 289 23-322 11-299 (452)
8 COG0520 csdA Selenocysteine ly 100.0 2.6E-33 5.6E-38 267.3 20.7 288 48-352 23-328 (405)
9 PRK13034 serine hydroxymethylt 100.0 3.2E-32 6.9E-37 262.9 28.4 278 22-321 4-281 (416)
10 PRK00011 glyA serine hydroxyme 100.0 1.1E-31 2.4E-36 260.1 28.8 275 25-321 4-278 (416)
11 cd00378 SHMT Serine-glycine hy 100.0 2E-31 4.4E-36 257.2 28.4 273 29-321 2-274 (402)
12 COG1104 NifS Cysteine sulfinat 100.0 1.8E-31 4E-36 246.4 19.2 252 53-336 8-271 (386)
13 KOG1549 Cysteine desulfurase N 100.0 3.1E-28 6.6E-33 225.8 18.6 244 47-323 43-301 (428)
14 PLN02651 cysteine desulfurase 100.0 9.7E-28 2.1E-32 228.6 19.1 265 53-351 6-287 (364)
15 PF00266 Aminotran_5: Aminotra 100.0 8.8E-28 1.9E-32 229.5 18.6 280 52-350 5-301 (371)
16 PRK10874 cysteine sulfinate de 100.0 8.5E-27 1.8E-31 224.9 20.8 264 48-331 20-300 (401)
17 PRK09295 bifunctional cysteine 99.9 1.8E-26 3.8E-31 223.1 21.0 266 48-333 24-307 (406)
18 TIGR03392 FeS_syn_CsdA cystein 99.9 1.7E-26 3.7E-31 222.6 20.5 264 48-332 17-298 (398)
19 TIGR01977 am_tr_V_EF2568 cyste 99.9 7.9E-26 1.7E-30 216.2 21.8 256 57-331 11-274 (376)
20 PLN02855 Bifunctional selenocy 99.9 1.2E-25 2.6E-30 218.4 21.5 285 48-351 33-336 (424)
21 TIGR03402 FeS_nifS cysteine de 99.9 7.7E-26 1.7E-30 216.7 19.8 238 53-322 6-252 (379)
22 COG0075 Serine-pyruvate aminot 99.9 1.1E-25 2.4E-30 209.6 20.1 258 48-331 6-270 (383)
23 TIGR02006 IscS cysteine desulf 99.9 9.8E-26 2.1E-30 217.5 19.6 242 49-321 5-259 (402)
24 TIGR03235 DNA_S_dndA cysteine 99.9 2.1E-25 4.6E-30 211.6 20.0 238 53-321 5-257 (353)
25 PLN02409 serine--glyoxylate am 99.9 2.8E-25 6.1E-30 214.1 20.9 256 48-331 10-277 (401)
26 TIGR01976 am_tr_V_VC1184 cyste 99.9 4.9E-25 1.1E-29 212.4 20.9 249 49-322 19-276 (397)
27 COG1168 MalY Bifunctional PLP- 99.9 9.8E-25 2.1E-29 198.2 19.8 229 55-318 36-281 (388)
28 cd06453 SufS_like Cysteine des 99.9 1.3E-24 2.8E-29 207.7 21.7 254 53-322 6-271 (373)
29 TIGR01979 sufS cysteine desulf 99.9 1.5E-24 3.3E-29 209.4 21.6 264 48-331 19-299 (403)
30 PRK02948 cysteine desulfurase; 99.9 8.6E-25 1.9E-29 209.6 19.1 238 53-321 7-253 (381)
31 TIGR03403 nifS_epsilon cystein 99.9 1.6E-24 3.4E-29 207.9 20.0 237 53-321 6-255 (382)
32 PRK14012 cysteine desulfurase; 99.9 1.8E-24 3.9E-29 208.9 19.8 238 53-322 10-262 (404)
33 cd06451 AGAT_like Alanine-glyo 99.9 3.4E-24 7.5E-29 203.5 21.2 247 49-322 1-255 (356)
34 TIGR02326 transamin_PhnW 2-ami 99.9 5E-24 1.1E-28 203.0 21.6 255 48-329 4-266 (363)
35 PRK09331 Sep-tRNA:Cys-tRNA syn 99.9 8.4E-24 1.8E-28 203.0 21.4 204 48-273 20-236 (387)
36 PLN02724 Molybdenum cofactor s 99.9 6.3E-24 1.4E-28 220.2 19.5 278 48-339 35-352 (805)
37 TIGR01814 kynureninase kynuren 99.9 8.8E-24 1.9E-28 204.2 19.2 268 47-331 27-313 (406)
38 KOG0257 Kynurenine aminotransf 99.9 2.6E-23 5.6E-28 190.8 20.5 230 24-272 9-261 (420)
39 PRK13479 2-aminoethylphosphona 99.9 4.7E-23 1E-27 196.6 21.9 253 49-328 7-266 (368)
40 COG0436 Aspartate/tyrosine/aro 99.9 5.8E-23 1.3E-27 196.4 22.2 239 47-319 29-285 (393)
41 PRK02769 histidine decarboxyla 99.9 1.8E-22 3.8E-27 192.1 23.6 256 59-339 35-304 (380)
42 cd06452 SepCysS Sep-tRNA:Cys-t 99.9 1.2E-22 2.6E-27 193.4 20.2 197 52-273 7-217 (361)
43 TIGR03301 PhnW-AepZ 2-aminoeth 99.9 1.1E-21 2.3E-26 186.0 22.6 250 50-326 2-258 (355)
44 PRK13238 tnaA tryptophanase/L- 99.9 1E-21 2.3E-26 191.3 21.9 238 46-322 36-315 (460)
45 KOG2862 Alanine-glyoxylate ami 99.9 5.8E-22 1.3E-26 174.7 17.9 257 49-331 19-287 (385)
46 COG0399 WecE Predicted pyridox 99.9 7.5E-22 1.6E-26 184.3 19.6 187 57-273 12-199 (374)
47 TIGR01437 selA_rel uncharacter 99.9 2.9E-21 6.3E-26 183.6 22.0 216 54-321 21-259 (363)
48 cd00615 Orn_deC_like Ornithine 99.9 1.7E-22 3.7E-27 186.8 12.0 201 97-322 64-273 (294)
49 cd00611 PSAT_like Phosphoserin 99.9 6.4E-22 1.4E-26 187.8 14.6 265 49-346 1-278 (355)
50 TIGR01822 2am3keto_CoA 2-amino 99.9 8.2E-21 1.8E-25 182.7 21.1 236 46-320 38-289 (393)
51 PLN03032 serine decarboxylase; 99.9 2.8E-20 6E-25 175.9 23.9 241 58-322 35-291 (374)
52 TIGR02539 SepCysS Sep-tRNA:Cys 99.9 4.2E-21 9.2E-26 183.3 18.1 203 47-273 7-224 (370)
53 PRK03080 phosphoserine aminotr 99.9 1.8E-21 4E-26 186.1 15.0 249 48-332 13-277 (378)
54 PRK13520 L-tyrosine decarboxyl 99.9 1.2E-20 2.6E-25 180.1 20.6 236 51-322 25-279 (371)
55 PRK06108 aspartate aminotransf 99.9 2.9E-20 6.4E-25 178.2 22.8 224 29-272 7-248 (382)
56 PRK05355 3-phosphoserine/phosp 99.9 4E-21 8.7E-26 182.2 16.4 270 48-347 4-282 (360)
57 PRK08361 aspartate aminotransf 99.9 4.2E-20 9.1E-25 177.7 20.0 225 25-272 12-253 (391)
58 PRK08960 hypothetical protein; 99.9 1.3E-19 2.9E-24 174.1 23.1 228 23-272 5-250 (387)
59 TIGR03812 tyr_de_CO2_Arch tyro 99.9 1.9E-19 4.1E-24 172.0 23.7 235 51-322 26-284 (373)
60 PLN00175 aminotransferase fami 99.8 1.2E-19 2.6E-24 175.5 22.4 228 23-272 32-275 (413)
61 PRK07366 succinyldiaminopimela 99.8 2.6E-19 5.6E-24 172.1 22.7 229 25-272 5-255 (388)
62 PRK09147 succinyldiaminopimela 99.8 3.3E-19 7.2E-24 171.8 23.0 225 27-272 5-261 (396)
63 PRK08912 hypothetical protein; 99.8 2.7E-19 5.9E-24 171.9 22.3 229 22-272 3-248 (387)
64 PRK06348 aspartate aminotransf 99.8 3.3E-19 7E-24 171.2 22.7 229 23-272 6-250 (384)
65 COG0156 BioF 7-keto-8-aminopel 99.8 1.6E-19 3.4E-24 169.9 20.0 250 47-341 40-307 (388)
66 PF01041 DegT_DnrJ_EryC1: DegT 99.8 3.6E-20 7.9E-25 176.3 15.8 183 60-273 5-190 (363)
67 cd06454 KBL_like KBL_like; thi 99.8 8.9E-20 1.9E-24 172.5 18.4 223 59-321 17-251 (349)
68 PRK07681 aspartate aminotransf 99.8 4.5E-19 9.7E-24 171.1 23.2 228 24-272 6-255 (399)
69 PRK07179 hypothetical protein; 99.8 2.1E-19 4.5E-24 173.8 20.7 223 59-322 70-301 (407)
70 PRK05942 aspartate aminotransf 99.8 5.5E-19 1.2E-23 170.1 23.4 229 25-272 10-259 (394)
71 TIGR01788 Glu-decarb-GAD gluta 99.8 1.4E-19 3.1E-24 174.5 19.2 199 55-273 50-277 (431)
72 PRK12414 putative aminotransfe 99.8 4.2E-19 9.2E-24 170.3 22.4 225 26-272 10-251 (384)
73 PRK05957 aspartate aminotransf 99.8 4.2E-19 9.1E-24 170.7 22.4 228 25-272 6-249 (389)
74 TIGR03540 DapC_direct LL-diami 99.8 6.4E-19 1.4E-23 169.1 23.4 207 46-272 29-253 (383)
75 PRK13355 bifunctional HTH-doma 99.8 2.6E-19 5.7E-24 178.0 20.6 226 23-271 119-368 (517)
76 cd00613 GDC-P Glycine cleavage 99.8 4.8E-19 1E-23 170.7 21.5 172 88-274 60-242 (398)
77 PRK09276 LL-diaminopimelate am 99.8 9.5E-19 2.1E-23 168.0 23.4 229 25-272 6-255 (385)
78 PRK06939 2-amino-3-ketobutyrat 99.8 2.3E-19 4.9E-24 172.8 18.9 236 47-321 43-294 (397)
79 PRK11658 UDP-4-amino-4-deoxy-L 99.8 2.3E-19 5E-24 171.7 18.8 185 58-273 12-197 (379)
80 PRK08068 transaminase; Reviewe 99.8 1E-18 2.2E-23 168.0 23.0 205 47-272 33-256 (389)
81 TIGR01364 serC_1 phosphoserine 99.8 1.4E-19 3E-24 170.9 16.5 255 57-340 2-264 (349)
82 PTZ00377 alanine aminotransfer 99.8 6E-19 1.3E-23 174.0 21.7 197 59-270 90-314 (481)
83 PRK07337 aminotransferase; Val 99.8 7.6E-19 1.6E-23 168.9 21.3 225 25-272 5-248 (388)
84 PRK06290 aspartate aminotransf 99.8 2.5E-18 5.3E-23 166.2 24.9 205 47-272 45-267 (410)
85 PRK06225 aspartate aminotransf 99.8 9.8E-19 2.1E-23 167.6 21.8 218 30-272 9-241 (380)
86 PLN02187 rooty/superroot1 99.8 8.7E-19 1.9E-23 171.6 21.7 206 46-272 66-292 (462)
87 PRK07309 aromatic amino acid a 99.8 1.1E-18 2.4E-23 167.8 22.2 232 20-272 4-253 (391)
88 PRK07682 hypothetical protein; 99.8 7.9E-19 1.7E-23 168.1 20.9 207 46-272 20-242 (378)
89 PRK06207 aspartate aminotransf 99.8 9.2E-19 2E-23 169.1 21.3 208 47-272 40-267 (405)
90 PRK09082 methionine aminotrans 99.8 5.6E-19 1.2E-23 169.7 19.6 229 24-272 9-252 (386)
91 PLN02368 alanine transaminase 99.8 1.8E-18 3.9E-23 166.4 23.1 174 84-270 103-306 (407)
92 PRK07777 aminotransferase; Val 99.8 1.7E-18 3.7E-23 166.3 22.7 227 26-272 5-248 (387)
93 PRK05764 aspartate aminotransf 99.8 1.7E-18 3.8E-23 166.6 22.5 229 23-272 4-254 (393)
94 TIGR03588 PseC UDP-4-keto-6-de 99.8 8.9E-19 1.9E-23 167.9 20.3 185 58-273 8-200 (380)
95 TIGR00858 bioF 8-amino-7-oxono 99.8 1.2E-18 2.6E-23 165.4 20.9 234 47-321 17-266 (360)
96 cd00617 Tnase_like Tryptophana 99.8 1.6E-18 3.4E-23 167.0 21.8 235 46-319 11-287 (431)
97 TIGR03538 DapC_gpp succinyldia 99.8 2.2E-18 4.7E-23 165.9 22.6 222 30-272 7-260 (393)
98 PLN02656 tyrosine transaminase 99.8 1.7E-18 3.6E-23 167.6 21.7 205 46-271 31-256 (409)
99 PRK07550 hypothetical protein; 99.8 2.7E-18 5.9E-23 164.9 22.9 207 47-272 30-252 (386)
100 PLN03227 serine palmitoyltrans 99.8 1.7E-18 3.7E-23 166.2 20.8 188 58-272 13-223 (392)
101 PRK07683 aminotransferase A; V 99.8 3.4E-18 7.4E-23 164.2 22.5 228 24-272 6-249 (387)
102 PLN02483 serine palmitoyltrans 99.8 1.1E-18 2.4E-23 171.8 19.2 199 84-322 142-361 (489)
103 PRK05958 8-amino-7-oxononanoat 99.8 2.4E-18 5.2E-23 164.9 20.8 236 46-321 39-288 (385)
104 TIGR03537 DapC succinyldiamino 99.8 2.9E-18 6.3E-23 162.6 20.9 201 49-272 3-222 (350)
105 TIGR01825 gly_Cac_T_rel pyrido 99.8 2.3E-18 5E-23 165.2 20.1 235 47-321 34-282 (385)
106 COG3844 Kynureninase [Amino ac 99.8 1.4E-18 3E-23 154.5 16.4 272 47-339 31-318 (407)
107 PTZ00433 tyrosine aminotransfe 99.8 3.6E-18 7.8E-23 165.4 21.0 206 45-271 32-264 (412)
108 TIGR01366 serC_3 phosphoserine 99.8 1.9E-19 4.1E-24 171.0 11.6 247 49-328 5-262 (361)
109 PRK08363 alanine aminotransfer 99.8 3.4E-18 7.4E-23 164.9 20.5 203 47-270 31-251 (398)
110 PLN00145 tyrosine/nicotianamin 99.8 7.1E-18 1.5E-22 164.0 22.8 205 47-272 53-278 (430)
111 TIGR03576 pyridox_MJ0158 pyrid 99.8 1.6E-18 3.5E-23 163.5 17.7 210 59-319 35-250 (346)
112 PRK07324 transaminase; Validat 99.8 1.2E-18 2.6E-23 166.5 16.9 199 47-272 27-238 (373)
113 TIGR02379 ECA_wecE TDP-4-keto- 99.8 3.2E-18 7E-23 163.3 19.2 184 58-273 9-197 (376)
114 PRK03317 histidinol-phosphate 99.8 2.6E-18 5.6E-23 164.0 18.0 234 48-318 28-273 (368)
115 PRK05937 8-amino-7-oxononanoat 99.8 4.4E-18 9.4E-23 162.5 18.8 191 96-322 60-262 (370)
116 PLN02822 serine palmitoyltrans 99.8 6.7E-18 1.5E-22 165.9 20.5 234 47-321 110-365 (481)
117 PLN02231 alanine transaminase 99.8 1.2E-17 2.7E-22 165.5 22.5 227 28-270 112-366 (534)
118 PRK15407 lipopolysaccharide bi 99.8 6.7E-18 1.4E-22 163.9 20.1 210 31-273 8-236 (438)
119 PRK04366 glycine dehydrogenase 99.8 1.4E-17 3.1E-22 163.8 22.7 199 52-274 76-293 (481)
120 cd00616 AHBA_syn 3-amino-5-hyd 99.8 4.5E-18 9.8E-23 161.1 18.5 158 97-273 23-183 (352)
121 COG0079 HisC Histidinol-phosph 99.8 6E-18 1.3E-22 159.4 19.0 221 47-317 23-256 (356)
122 PRK06107 aspartate aminotransf 99.8 1.2E-17 2.6E-22 161.3 21.6 208 46-272 33-257 (402)
123 PRK09265 aminotransferase AlaT 99.8 1.4E-17 3E-22 161.0 21.7 202 47-271 34-255 (404)
124 PLN03026 histidinol-phosphate 99.8 4.7E-18 1E-22 162.8 18.3 220 47-316 53-283 (380)
125 PF01276 OKR_DC_1: Orn/Lys/Arg 99.8 3.2E-19 7E-24 168.9 9.0 200 97-321 71-293 (417)
126 cd06450 DOPA_deC_like DOPA dec 99.8 7.2E-19 1.6E-23 166.2 11.2 173 85-271 31-230 (345)
127 cd06502 TA_like Low-specificit 99.8 4E-18 8.7E-23 160.6 16.1 188 58-272 10-210 (338)
128 PRK04311 selenocysteine syntha 99.8 1.1E-17 2.3E-22 162.5 19.3 233 53-321 93-341 (464)
129 PRK05387 histidinol-phosphate 99.8 5E-18 1.1E-22 161.1 16.6 222 47-317 25-257 (353)
130 PRK08636 aspartate aminotransf 99.8 4.2E-17 9.1E-22 157.5 23.2 226 28-272 11-264 (403)
131 TIGR00474 selA seryl-tRNA(sec) 99.8 1.1E-17 2.4E-22 162.0 19.1 199 53-273 88-303 (454)
132 PRK09148 aminotransferase; Val 99.8 4.5E-17 9.7E-22 157.4 23.3 227 27-272 7-254 (405)
133 TIGR01141 hisC histidinol-phos 99.8 4.2E-18 9E-23 161.2 15.8 195 47-272 20-226 (346)
134 PLN02376 1-aminocyclopropane-1 99.8 2E-17 4.4E-22 163.0 20.9 214 47-273 47-296 (496)
135 PLN00143 tyrosine/nicotianamin 99.8 1.3E-17 2.8E-22 161.3 19.1 206 46-272 32-258 (409)
136 PRK07810 O-succinylhomoserine 99.8 3.7E-18 8.1E-23 164.2 15.2 155 97-273 75-234 (403)
137 PRK14807 histidinol-phosphate 99.8 1.9E-17 4.2E-22 157.0 19.9 198 48-272 24-229 (351)
138 TIGR01265 tyr_nico_aTase tyros 99.8 5.5E-17 1.2E-21 156.7 23.3 206 46-272 31-257 (403)
139 cd01494 AAT_I Aspartate aminot 99.8 6.8E-18 1.5E-22 142.3 14.8 162 97-271 5-170 (170)
140 PLN02721 threonine aldolase 99.8 6.4E-18 1.4E-22 160.2 16.0 200 48-272 7-222 (353)
141 PRK11706 TDP-4-oxo-6-deoxy-D-g 99.8 1.9E-17 4E-22 158.4 19.2 184 58-273 9-196 (375)
142 PRK01533 histidinol-phosphate 99.8 1E-17 2.2E-22 159.7 17.2 221 47-316 30-265 (366)
143 PLN02414 glycine dehydrogenase 99.8 9.3E-18 2E-22 174.0 18.1 170 89-278 565-755 (993)
144 PLN02452 phosphoserine transam 99.8 9.6E-18 2.1E-22 158.6 16.7 260 47-334 7-273 (365)
145 PRK03158 histidinol-phosphate 99.8 1.1E-17 2.4E-22 159.1 16.9 196 47-272 30-238 (359)
146 PRK07503 methionine gamma-lyas 99.8 1E-17 2.2E-22 161.3 16.1 154 97-272 70-228 (403)
147 PRK04870 histidinol-phosphate 99.8 2.2E-17 4.8E-22 156.9 18.0 198 47-272 27-233 (356)
148 PLN02955 8-amino-7-oxononanoat 99.8 4.3E-17 9.3E-22 157.0 19.6 243 58-343 117-386 (476)
149 PRK08776 cystathionine gamma-s 99.8 8.7E-18 1.9E-22 161.6 14.8 154 97-273 65-224 (405)
150 TIGR01328 met_gam_lyase methio 99.8 1.2E-17 2.6E-22 160.2 15.7 154 97-272 64-222 (391)
151 PRK07568 aspartate aminotransf 99.8 1.2E-16 2.6E-21 154.0 22.7 203 47-272 31-251 (397)
152 PRK08574 cystathionine gamma-s 99.8 9.2E-18 2E-22 160.6 14.8 159 88-273 53-216 (385)
153 PRK06855 aminotransferase; Val 99.8 8.4E-17 1.8E-21 156.7 21.5 204 47-271 33-258 (433)
154 PRK08056 threonine-phosphate d 99.8 4.4E-17 9.6E-22 154.8 18.7 192 47-272 21-228 (356)
155 TIGR01264 tyr_amTase_E tyrosin 99.8 1E-16 2.2E-21 154.7 21.6 205 47-272 32-256 (401)
156 PRK08861 cystathionine gamma-s 99.8 9.8E-18 2.1E-22 160.1 14.0 154 97-273 58-217 (388)
157 PLN02450 1-aminocyclopropane-1 99.8 7.1E-17 1.5E-21 158.4 20.4 214 47-273 39-289 (468)
158 PRK09105 putative aminotransfe 99.8 5.1E-17 1.1E-21 155.1 18.9 194 47-272 44-249 (370)
159 PRK13392 5-aminolevulinate syn 99.8 4.7E-17 1E-21 157.5 18.9 224 58-322 61-298 (410)
160 PRK06767 methionine gamma-lyas 99.8 9.6E-18 2.1E-22 160.8 13.9 155 97-273 66-225 (386)
161 PRK02731 histidinol-phosphate 99.8 4.6E-17 9.9E-22 155.3 18.5 196 46-272 32-241 (367)
162 PRK07811 cystathionine gamma-s 99.8 1.1E-17 2.4E-22 160.3 14.0 155 97-273 66-225 (388)
163 TIGR03531 selenium_SpcS O-phos 99.8 7.1E-17 1.5E-21 155.4 19.4 173 90-273 103-289 (444)
164 TIGR01329 cysta_beta_ly_E cyst 99.8 1E-17 2.2E-22 160.1 13.6 154 97-273 52-210 (378)
165 PRK00950 histidinol-phosphate 99.8 2.3E-17 5.1E-22 156.9 16.0 196 47-272 35-239 (361)
166 PRK07504 O-succinylhomoserine 99.7 1.2E-17 2.7E-22 160.5 13.9 155 97-273 70-229 (398)
167 TIGR01324 cysta_beta_ly_B cyst 99.7 2.6E-17 5.7E-22 156.8 15.9 158 88-272 50-213 (377)
168 cd00609 AAT_like Aspartate ami 99.7 1.2E-16 2.6E-21 150.7 20.2 207 86-320 34-254 (350)
169 PRK06460 hypothetical protein; 99.7 2.3E-17 4.9E-22 157.5 15.2 154 97-272 50-208 (376)
170 PRK05968 hypothetical protein; 99.7 2.1E-17 4.5E-22 158.5 15.0 153 97-272 68-225 (389)
171 PRK06234 methionine gamma-lyas 99.7 2E-17 4.3E-22 159.3 14.7 159 88-272 64-229 (400)
172 PRK08064 cystathionine beta-ly 99.7 1.4E-17 3.1E-22 159.7 13.7 154 97-273 59-217 (390)
173 TIGR01821 5aminolev_synth 5-am 99.7 1.3E-16 2.8E-21 154.1 20.2 224 58-322 60-297 (402)
174 PRK08153 histidinol-phosphate 99.7 8.3E-17 1.8E-21 153.6 18.1 222 48-317 34-267 (369)
175 PRK08133 O-succinylhomoserine 99.7 3.5E-17 7.6E-22 157.0 15.3 154 97-272 66-224 (390)
176 PRK09064 5-aminolevulinate syn 99.7 2.4E-16 5.3E-21 152.4 21.2 234 48-322 48-298 (407)
177 PRK05939 hypothetical protein; 99.7 3.3E-17 7.2E-22 157.2 15.0 157 88-271 47-207 (397)
178 PRK08249 cystathionine gamma-s 99.7 3.4E-17 7.4E-22 157.3 14.8 154 97-272 69-227 (398)
179 PRK14809 histidinol-phosphate 99.7 1.2E-16 2.6E-21 151.9 18.3 196 47-272 31-238 (357)
180 PRK08134 O-acetylhomoserine am 99.7 3.2E-17 6.9E-22 158.7 14.3 147 97-265 69-217 (433)
181 PRK05613 O-acetylhomoserine am 99.7 2.5E-17 5.4E-22 159.4 13.3 155 97-272 74-233 (437)
182 COG1103 Archaea-specific pyrid 99.7 1.1E-16 2.5E-21 138.9 15.9 202 47-275 16-236 (382)
183 PRK09028 cystathionine beta-ly 99.7 4.9E-17 1.1E-21 155.2 14.6 153 97-272 66-224 (394)
184 PRK03321 putative aminotransfe 99.7 7.6E-17 1.6E-21 152.9 15.8 196 47-272 23-232 (352)
185 PRK02610 histidinol-phosphate 99.7 1.8E-16 3.9E-21 151.6 18.5 203 47-272 29-250 (374)
186 PRK08175 aminotransferase; Val 99.7 8.1E-16 1.8E-20 148.2 23.1 204 47-272 30-253 (395)
187 PRK07865 N-succinyldiaminopime 99.7 3.3E-16 7.1E-21 149.3 20.0 215 23-272 3-239 (364)
188 TIGR02618 tyr_phenol_ly tyrosi 99.7 2.6E-16 5.7E-21 149.7 18.9 207 84-322 67-308 (450)
189 cd00614 CGS_like CGS_like: Cys 99.7 4.6E-17 1E-21 155.3 13.9 158 88-272 40-203 (369)
190 COG0076 GadB Glutamate decarbo 99.7 3.5E-16 7.6E-21 151.5 20.1 200 53-273 69-292 (460)
191 PRK05839 hypothetical protein; 99.7 7.2E-16 1.6E-20 147.4 21.9 201 47-272 25-248 (374)
192 PRK05166 histidinol-phosphate 99.7 1.3E-16 2.8E-21 152.5 16.6 197 47-273 37-248 (371)
193 PRK07590 L,L-diaminopimelate a 99.7 5.2E-16 1.1E-20 150.2 21.0 217 33-273 19-266 (409)
194 PRK00451 glycine dehydrogenase 99.7 3.4E-16 7.3E-21 153.3 19.6 160 97-274 117-286 (447)
195 TIGR03799 NOD_PanD_pyr putativ 99.7 2E-16 4.4E-21 155.8 18.0 236 88-340 125-413 (522)
196 PRK09275 aspartate aminotransf 99.7 2.1E-16 4.6E-21 155.2 18.0 203 48-273 102-328 (527)
197 TIGR01325 O_suc_HS_sulf O-succ 99.7 6.5E-17 1.4E-21 154.8 14.1 154 97-272 59-217 (380)
198 PRK06176 cystathionine gamma-s 99.7 5.9E-17 1.3E-21 154.8 13.7 154 97-273 55-213 (380)
199 KOG0259 Tyrosine aminotransfer 99.7 3.4E-16 7.5E-21 142.0 17.7 202 47-273 62-288 (447)
200 PRK08114 cystathionine beta-ly 99.7 4.8E-17 1E-21 154.9 12.9 159 88-272 62-227 (395)
201 PLN02509 cystathionine beta-ly 99.7 1.1E-16 2.5E-21 155.4 15.5 155 96-273 137-296 (464)
202 PRK08045 cystathionine gamma-s 99.7 8.9E-17 1.9E-21 153.8 14.6 154 97-273 57-216 (386)
203 PRK13393 5-aminolevulinate syn 99.7 4.6E-16 1E-20 150.4 19.4 224 58-322 60-297 (406)
204 PRK07050 cystathionine beta-ly 99.7 1.2E-16 2.6E-21 153.4 14.9 154 97-273 70-229 (394)
205 TIGR02080 O_succ_thio_ly O-suc 99.7 1.3E-16 2.9E-21 152.5 15.2 154 97-273 56-215 (382)
206 PRK15029 arginine decarboxylas 99.7 9.3E-17 2E-21 162.5 14.8 201 97-321 210-440 (755)
207 PRK10534 L-threonine aldolase; 99.7 1.4E-16 3.1E-21 149.9 15.1 198 49-272 2-211 (333)
208 PRK07671 cystathionine beta-ly 99.7 1.3E-16 2.8E-21 152.3 14.9 153 97-273 55-213 (377)
209 PLN02263 serine decarboxylase 99.7 3.8E-15 8.3E-20 143.3 24.8 171 89-273 130-317 (470)
210 PRK08248 O-acetylhomoserine am 99.7 1.2E-16 2.6E-21 154.8 14.6 152 97-270 69-224 (431)
211 PRK01688 histidinol-phosphate 99.7 7.2E-17 1.6E-21 153.0 12.8 155 97-272 62-229 (351)
212 PLN02672 methionine S-methyltr 99.7 3.7E-16 8.1E-21 162.6 18.9 206 47-273 698-927 (1082)
213 PRK15481 transcriptional regul 99.7 3.7E-16 8.1E-21 152.2 18.0 197 48-272 87-297 (431)
214 PLN02607 1-aminocyclopropane-1 99.7 1.1E-15 2.5E-20 148.9 20.2 212 47-272 48-295 (447)
215 PRK09257 aromatic amino acid a 99.7 1.2E-15 2.6E-20 147.1 20.2 225 28-270 6-260 (396)
216 PRK07812 O-acetylhomoserine am 99.7 1.9E-16 4.2E-21 153.2 14.4 153 97-270 74-230 (436)
217 PRK06836 aspartate aminotransf 99.7 1E-15 2.2E-20 147.4 19.3 208 47-273 34-261 (394)
218 TIGR03539 DapC_actino succinyl 99.7 9E-16 1.9E-20 145.9 18.5 193 46-272 21-233 (357)
219 PF00155 Aminotran_1_2: Aminot 99.7 4.2E-16 9.1E-21 148.3 16.2 206 48-272 3-237 (363)
220 TIGR03801 asp_4_decarbox aspar 99.7 7.3E-16 1.6E-20 151.2 18.2 205 48-273 96-327 (521)
221 PRK05994 O-acetylhomoserine am 99.7 2.9E-16 6.2E-21 152.2 15.1 147 97-265 68-216 (427)
222 PLN02242 methionine gamma-lyas 99.7 2.2E-16 4.8E-21 152.4 14.2 160 88-272 76-240 (418)
223 PRK03967 histidinol-phosphate 99.7 9E-16 1.9E-20 144.7 17.5 222 47-317 19-248 (337)
224 PRK13237 tyrosine phenol-lyase 99.7 2.3E-15 4.9E-20 143.7 19.0 208 84-322 74-315 (460)
225 PTZ00376 aspartate aminotransf 99.7 1.4E-15 3.1E-20 146.9 18.0 208 46-269 29-264 (404)
226 PRK12462 phosphoserine aminotr 99.7 2.2E-15 4.7E-20 141.4 18.6 254 47-329 4-267 (364)
227 TIGR01326 OAH_OAS_sulfhy OAH/O 99.7 4.2E-16 9E-21 150.9 13.8 153 97-272 62-219 (418)
228 PRK08247 cystathionine gamma-s 99.7 8.9E-16 1.9E-20 146.3 15.6 153 97-272 57-214 (366)
229 PRK06084 O-acetylhomoserine am 99.7 7.4E-16 1.6E-20 149.1 15.1 154 97-272 63-221 (425)
230 PRK07269 cystathionine gamma-s 99.7 3.6E-16 7.7E-21 148.5 12.3 155 88-273 54-215 (364)
231 PRK06702 O-acetylhomoserine am 99.7 5.7E-16 1.2E-20 149.2 13.8 157 88-270 61-223 (432)
232 PRK05967 cystathionine beta-ly 99.7 1.1E-15 2.3E-20 145.8 15.2 154 97-272 69-227 (395)
233 PLN02880 tyrosine decarboxylas 99.7 8.7E-16 1.9E-20 150.9 15.0 177 88-273 118-323 (490)
234 PRK04635 histidinol-phosphate 99.7 7E-16 1.5E-20 146.5 13.2 158 97-272 65-230 (354)
235 PRK06358 threonine-phosphate d 99.7 5.5E-15 1.2E-19 140.3 18.7 194 48-272 21-229 (354)
236 PRK07908 hypothetical protein; 99.7 5.3E-15 1.1E-19 140.2 17.8 190 46-272 22-220 (349)
237 TIGR03542 DAPAT_plant LL-diami 99.7 1.4E-14 3E-19 140.0 20.8 202 47-273 34-263 (402)
238 PRK13578 ornithine decarboxyla 99.7 7.6E-16 1.6E-20 154.5 12.2 208 97-322 179-415 (720)
239 PRK07392 threonine-phosphate d 99.6 7.6E-15 1.7E-19 139.7 18.5 223 47-317 23-260 (360)
240 PLN02590 probable tyrosine dec 99.6 5.8E-15 1.3E-19 145.4 16.3 177 88-273 166-371 (539)
241 TIGR00461 gcvP glycine dehydro 99.6 4.2E-15 9.1E-20 152.8 15.7 175 88-280 526-719 (939)
242 COG1167 ARO8 Transcriptional r 99.6 1.1E-14 2.4E-19 142.4 16.9 176 83-273 127-315 (459)
243 PRK04781 histidinol-phosphate 99.6 1.5E-14 3.4E-19 137.8 17.2 162 97-272 64-236 (364)
244 PF01212 Beta_elim_lyase: Beta 99.6 1.5E-15 3.2E-20 139.2 9.7 190 54-273 4-210 (290)
245 PRK09440 avtA valine--pyruvate 99.6 3.4E-14 7.4E-19 137.9 19.6 213 46-272 30-264 (416)
246 TIGR01365 serC_2 phosphoserine 99.6 1.1E-14 2.4E-19 138.0 15.4 243 50-327 6-263 (374)
247 PRK07582 cystathionine gamma-l 99.6 4.6E-15 1E-19 141.2 12.9 149 97-273 56-211 (366)
248 TIGR01140 L_thr_O3P_dcar L-thr 99.6 1.4E-14 3E-19 136.2 15.4 184 47-272 18-210 (330)
249 PRK07505 hypothetical protein; 99.6 1E-13 2.2E-18 133.9 21.4 235 48-322 48-302 (402)
250 PRK07049 methionine gamma-lyas 99.6 3E-14 6.6E-19 138.1 16.4 155 97-272 88-258 (427)
251 PF00282 Pyridoxal_deC: Pyrido 99.6 2.7E-14 5.8E-19 135.9 15.1 175 88-273 75-278 (373)
252 PRK14808 histidinol-phosphate 99.6 5.6E-14 1.2E-18 132.4 17.1 186 47-272 20-218 (335)
253 PRK05664 threonine-phosphate d 99.6 3.6E-14 7.9E-19 133.4 15.7 147 97-272 54-208 (330)
254 COG1921 SelA Selenocysteine sy 99.6 1.1E-13 2.4E-18 128.4 18.5 231 53-322 34-272 (395)
255 PRK06434 cystathionine gamma-l 99.6 1.5E-14 3.2E-19 137.9 12.6 156 88-273 64-225 (384)
256 cd00610 OAT_like Acetyl ornith 99.6 1.4E-13 3.1E-18 133.2 19.1 247 47-322 37-312 (413)
257 PLN02397 aspartate transaminas 99.6 1.1E-13 2.3E-18 134.5 17.8 176 84-269 87-282 (423)
258 KOG1359 Glycine C-acetyltransf 99.6 3.8E-14 8.2E-19 124.7 13.0 221 58-322 82-314 (417)
259 PRK08354 putative aminotransfe 99.6 9.9E-14 2.2E-18 129.4 16.8 179 47-270 9-196 (311)
260 COG2008 GLY1 Threonine aldolas 99.6 5.1E-14 1.1E-18 128.3 14.3 192 58-273 12-215 (342)
261 PRK05367 glycine dehydrogenase 99.6 4.5E-14 9.7E-19 147.4 15.0 170 88-276 538-727 (954)
262 PRK15399 lysine decarboxylase 99.6 6E-14 1.3E-18 140.8 15.0 195 97-321 200-418 (713)
263 PRK15400 lysine decarboxylase 99.6 2E-14 4.4E-19 144.2 11.6 197 97-322 200-419 (714)
264 COG0626 MetC Cystathionine bet 99.5 1.4E-13 3E-18 129.8 14.9 160 88-273 63-228 (396)
265 KOG1360 5-aminolevulinate synt 99.5 1.7E-13 3.6E-18 125.2 14.2 223 59-323 187-424 (570)
266 PRK12566 glycine dehydrogenase 99.5 9.1E-14 2E-18 142.2 13.9 159 96-272 547-719 (954)
267 PF01053 Cys_Met_Meta_PP: Cys/ 99.5 5.9E-14 1.3E-18 133.5 11.6 158 88-272 55-219 (386)
268 PRK08637 hypothetical protein; 99.5 7E-13 1.5E-17 127.5 18.6 177 85-272 41-243 (388)
269 PRK06959 putative threonine-ph 99.5 1.3E-13 2.8E-18 130.1 12.7 149 97-272 58-214 (339)
270 PRK03244 argD acetylornithine 99.5 1.5E-12 3.2E-17 125.7 20.1 234 58-331 60-311 (398)
271 PRK00854 rocD ornithine--oxo-a 99.5 2.3E-12 5E-17 124.4 20.8 224 59-322 59-307 (401)
272 COG2873 MET17 O-acetylhomoseri 99.5 2.3E-13 5E-18 123.7 12.8 158 88-272 62-224 (426)
273 KOG0053 Cystathionine beta-lya 99.5 2.4E-13 5.1E-18 126.8 12.6 152 99-272 84-240 (409)
274 TIGR00707 argD acetylornithine 99.5 1.9E-12 4.2E-17 123.9 19.3 232 47-321 28-288 (379)
275 PRK01278 argD acetylornithine 99.5 2.2E-12 4.7E-17 124.1 19.4 222 58-322 48-294 (389)
276 PRK06425 histidinol-phosphate 99.5 6.1E-13 1.3E-17 125.2 14.8 153 97-272 45-209 (332)
277 KOG1368 Threonine aldolase [Am 99.5 3.5E-13 7.5E-18 118.9 11.5 201 48-273 23-240 (384)
278 COG1982 LdcC Arginine/lysine/o 99.5 3.5E-13 7.6E-18 130.4 11.6 201 97-321 75-285 (557)
279 PLN02414 glycine dehydrogenase 99.5 2.4E-12 5.3E-17 134.1 18.3 154 96-274 152-316 (993)
280 TIGR03811 tyr_de_CO2_Ent tyros 99.4 1.1E-11 2.4E-16 123.7 21.1 171 88-273 119-399 (608)
281 PRK04073 rocD ornithine--oxo-a 99.4 1.4E-11 3.1E-16 118.8 20.8 220 58-322 57-306 (396)
282 TIGR00713 hemL glutamate-1-sem 99.4 9.6E-12 2.1E-16 121.0 19.1 244 47-331 49-325 (423)
283 PF06838 Met_gamma_lyase: Meth 99.4 1.4E-12 3.1E-17 118.9 12.2 198 60-274 27-241 (403)
284 PTZ00125 ornithine aminotransf 99.4 1.3E-11 2.8E-16 119.1 19.6 224 58-323 48-299 (400)
285 KOG0256 1-aminocyclopropane-1- 99.4 1.6E-11 3.5E-16 112.8 18.8 178 83-273 116-320 (471)
286 PF03841 SelA: L-seryl-tRNA se 99.4 2.7E-13 5.8E-18 124.9 7.2 228 54-321 14-261 (367)
287 TIGR02617 tnaA_trp_ase tryptop 99.4 3.2E-12 6.9E-17 121.0 14.6 232 57-322 54-324 (467)
288 TIGR03246 arg_catab_astC succi 99.4 2.2E-11 4.7E-16 117.5 19.5 244 47-331 36-307 (397)
289 PRK02627 acetylornithine amino 99.4 2E-11 4.4E-16 117.6 19.4 222 59-322 57-301 (396)
290 KOG1357 Serine palmitoyltransf 99.4 9.5E-12 2.1E-16 115.6 15.1 243 53-340 151-417 (519)
291 COG4992 ArgD Ornithine/acetylo 99.4 2.5E-11 5.5E-16 113.0 18.0 267 46-355 42-336 (404)
292 COG1003 GcvP Glycine cleavage 99.4 8.5E-12 1.9E-16 115.6 14.3 173 90-280 107-295 (496)
293 PRK05367 glycine dehydrogenase 99.4 3.5E-12 7.6E-17 133.4 13.2 155 96-275 125-289 (954)
294 COG0160 GabT 4-aminobutyrate a 99.3 1.6E-10 3.5E-15 110.5 21.1 278 48-355 58-373 (447)
295 PRK02936 argD acetylornithine 99.3 7.6E-11 1.7E-15 112.9 19.2 232 47-322 30-286 (377)
296 PRK03715 argD acetylornithine 99.3 1.4E-10 3.1E-15 111.5 18.2 233 58-334 53-309 (395)
297 TIGR01885 Orn_aminotrans ornit 99.3 2.7E-10 5.9E-15 110.0 20.2 225 58-322 54-306 (401)
298 PRK04013 argD acetylornithine/ 99.3 3.1E-10 6.7E-15 107.7 20.0 244 58-357 41-302 (364)
299 PRK12381 bifunctional succinyl 99.3 2.4E-10 5.2E-15 110.6 19.6 224 58-323 56-303 (406)
300 TIGR03372 putres_am_tran putre 99.3 4E-10 8.6E-15 109.6 20.2 260 58-357 92-382 (442)
301 PRK12403 putative aminotransfe 99.3 4.6E-10 1E-14 110.0 20.5 155 185-356 209-381 (460)
302 KOG0633 Histidinol phosphate a 99.3 7.9E-11 1.7E-15 102.4 12.3 212 105-354 82-307 (375)
303 PRK00062 glutamate-1-semialdeh 99.2 1.8E-10 3.8E-15 112.1 15.9 252 47-337 51-333 (426)
304 PRK05093 argD bifunctional N-s 99.2 1.4E-09 3E-14 105.2 21.3 223 58-322 57-303 (403)
305 COG0001 HemL Glutamate-1-semia 99.2 1.2E-09 2.5E-14 103.0 19.5 238 47-322 54-321 (432)
306 PLN02624 ornithine-delta-amino 99.2 7.7E-10 1.7E-14 108.9 19.4 220 59-322 93-344 (474)
307 PRK04612 argD acetylornithine 99.2 1.6E-09 3.5E-14 104.6 20.4 260 58-357 57-341 (408)
308 PLN02760 4-aminobutyrate:pyruv 99.2 1.4E-09 3.1E-14 107.4 19.8 154 185-357 247-421 (504)
309 KOG3846 L-kynurenine hydrolase 99.2 6E-11 1.3E-15 105.3 8.5 262 57-334 78-363 (465)
310 COG4100 Cystathionine beta-lya 99.2 1E-09 2.3E-14 97.3 15.8 199 60-274 38-252 (416)
311 PRK11522 putrescine--2-oxoglut 99.2 1.7E-09 3.7E-14 105.8 18.9 260 58-357 99-389 (459)
312 KOG0258 Alanine aminotransfera 99.2 6.6E-10 1.4E-14 101.8 14.3 197 58-270 87-311 (475)
313 PRK06058 4-aminobutyrate amino 99.2 3.6E-09 7.8E-14 103.4 20.6 270 58-357 73-373 (443)
314 PRK08117 4-aminobutyrate amino 99.2 4.7E-09 1E-13 102.4 21.2 252 47-331 44-335 (433)
315 PRK05964 adenosylmethionine--8 99.2 3.2E-09 6.9E-14 103.3 19.7 267 58-355 59-358 (423)
316 PRK07046 aminotransferase; Val 99.2 3.4E-09 7.3E-14 103.6 19.7 244 48-331 77-353 (453)
317 PRK08360 4-aminobutyrate amino 99.2 9.3E-09 2E-13 100.4 22.8 268 58-357 58-358 (443)
318 PRK13360 omega amino acid--pyr 99.2 6.5E-09 1.4E-13 101.4 21.5 269 58-356 63-375 (442)
319 PRK04260 acetylornithine amino 99.1 3.2E-09 7E-14 101.6 18.8 245 47-332 30-294 (375)
320 PRK06062 hypothetical protein; 99.1 5.1E-09 1.1E-13 102.4 19.7 276 47-356 54-371 (451)
321 PRK06105 aminotransferase; Pro 99.1 8.4E-09 1.8E-13 101.2 21.2 270 58-356 65-378 (460)
322 PRK07482 hypothetical protein; 99.1 6.8E-09 1.5E-13 101.8 19.8 280 48-357 52-382 (461)
323 PRK07495 4-aminobutyrate amino 99.1 2.3E-08 4.9E-13 97.2 22.8 267 58-356 57-351 (425)
324 PLN00144 acetylornithine trans 99.1 1.3E-08 2.9E-13 97.6 20.6 155 183-355 155-319 (382)
325 PRK05965 hypothetical protein; 99.1 1.6E-08 3.5E-13 99.1 20.8 269 58-357 63-376 (459)
326 PRK08593 4-aminobutyrate amino 99.1 1.7E-08 3.6E-13 98.7 20.8 268 58-356 59-360 (445)
327 PRK07986 adenosylmethionine--8 99.1 1.2E-08 2.5E-13 99.1 19.5 265 58-355 60-362 (428)
328 PRK06541 hypothetical protein; 99.1 1.7E-08 3.6E-13 99.0 20.3 266 58-355 69-377 (460)
329 PRK05639 4-aminobutyrate amino 99.1 2.5E-08 5.3E-13 97.7 21.1 268 58-357 70-375 (457)
330 PRK09792 4-aminobutyrate trans 99.1 2E-08 4.3E-13 97.5 20.2 269 58-355 57-350 (421)
331 PRK05769 4-aminobutyrate amino 99.0 3E-08 6.4E-13 96.8 20.9 266 58-356 71-372 (441)
332 PRK06082 4-aminobutyrate amino 99.0 3.5E-08 7.5E-13 96.8 21.3 267 58-357 88-383 (459)
333 PRK06943 adenosylmethionine--8 99.0 3.2E-08 6.9E-13 96.9 21.0 267 58-356 71-381 (453)
334 PRK00615 glutamate-1-semialdeh 99.0 3.7E-08 8E-13 95.8 20.8 245 47-331 54-331 (433)
335 PLN02482 glutamate-1-semialdeh 99.0 4.6E-08 1E-12 96.0 21.3 234 58-331 116-376 (474)
336 PRK08088 4-aminobutyrate amino 99.0 2.5E-08 5.5E-13 97.0 19.3 246 58-331 58-327 (425)
337 PRK09221 beta alanine--pyruvat 99.0 4.5E-08 9.8E-13 95.6 21.0 154 184-356 204-378 (445)
338 PRK12389 glutamate-1-semialdeh 99.0 3.7E-08 8E-13 95.9 20.3 250 47-335 54-334 (428)
339 PRK07678 aminotransferase; Val 99.0 3.1E-08 6.8E-13 97.0 19.7 266 58-356 64-373 (451)
340 PRK07481 hypothetical protein; 99.0 5.9E-08 1.3E-12 95.0 21.6 146 195-357 213-375 (449)
341 COG3977 Alanine-alpha-ketoisov 99.0 3.8E-08 8.2E-13 87.5 17.9 214 47-274 31-266 (417)
342 PRK06149 hypothetical protein; 99.0 5.9E-08 1.3E-12 103.4 22.3 144 195-356 744-899 (972)
343 PRK07483 hypothetical protein; 99.0 3.8E-08 8.3E-13 96.1 19.2 156 185-357 186-359 (443)
344 PRK07480 putative aminotransfe 99.0 6.3E-08 1.4E-12 94.9 20.5 154 185-356 206-377 (456)
345 KOG0634 Aromatic amino acid am 99.0 2.3E-08 5E-13 93.0 16.3 138 83-234 95-248 (472)
346 PRK06777 4-aminobutyrate amino 99.0 8.2E-08 1.8E-12 93.3 20.8 268 58-355 57-350 (421)
347 PRK06209 glutamate-1-semialdeh 98.9 8.1E-08 1.7E-12 93.6 19.6 243 47-332 49-319 (431)
348 TIGR00700 GABAtrnsam 4-aminobu 98.9 7.9E-08 1.7E-12 93.5 19.5 242 58-331 50-325 (420)
349 PRK05630 adenosylmethionine--8 98.9 5.9E-08 1.3E-12 94.2 18.4 151 185-355 191-359 (422)
350 PRK07036 hypothetical protein; 98.9 1.7E-07 3.8E-12 92.0 21.8 154 185-356 207-381 (466)
351 PRK07030 adenosylmethionine--8 98.9 8.7E-08 1.9E-12 94.1 19.7 267 58-356 64-375 (466)
352 PRK08742 adenosylmethionine--8 98.9 1E-07 2.2E-12 93.6 20.1 155 184-356 223-396 (472)
353 PRK06173 adenosylmethionine--8 98.9 8.2E-08 1.8E-12 93.3 18.9 265 58-355 61-364 (429)
354 PF00202 Aminotran_3: Aminotra 98.9 2.6E-08 5.7E-13 93.9 14.9 267 58-355 33-329 (339)
355 PRK06916 adenosylmethionine--8 98.9 6.5E-08 1.4E-12 94.9 18.0 267 58-356 73-384 (460)
356 PRK06938 diaminobutyrate--2-ox 98.9 8.9E-08 1.9E-12 94.0 18.8 269 58-357 80-384 (464)
357 PRK06917 hypothetical protein; 98.9 1.8E-07 4E-12 91.4 20.5 269 58-357 48-359 (447)
358 TIGR02407 ectoine_ectB diamino 98.9 2.2E-07 4.8E-12 90.0 20.8 242 58-331 52-323 (412)
359 TIGR00709 dat 2,4-diaminobutyr 98.9 2.1E-07 4.6E-12 91.0 20.8 277 47-357 40-359 (442)
360 TIGR00508 bioA adenosylmethion 98.9 1.8E-07 3.8E-12 91.1 19.9 268 57-355 61-365 (427)
361 KOG0629 Glutamate decarboxylas 98.9 3E-09 6.6E-14 98.5 7.1 167 93-273 142-337 (510)
362 COG1932 SerC Phosphoserine ami 98.9 2.8E-08 6E-13 91.1 12.7 263 47-340 5-283 (365)
363 PRK09264 diaminobutyrate--2-ox 98.9 2.9E-07 6.4E-12 89.6 20.6 201 58-272 56-283 (425)
364 PRK06148 hypothetical protein; 98.9 2.8E-07 6E-12 98.5 21.1 268 58-357 639-940 (1013)
365 KOG1358 Serine palmitoyltransf 98.8 5.8E-08 1.3E-12 89.3 13.5 186 59-272 110-317 (467)
366 COG0403 GcvP Glycine cleavage 98.8 5.1E-08 1.1E-12 90.9 12.4 157 97-274 125-293 (450)
367 KOG1383 Glutamate decarboxylas 98.8 7.6E-08 1.7E-12 90.5 12.5 170 90-273 118-305 (491)
368 PRK06918 4-aminobutyrate amino 98.8 1.2E-06 2.5E-11 86.0 21.6 244 58-332 71-348 (451)
369 PRK06931 diaminobutyrate--2-ox 98.8 1.1E-06 2.5E-11 86.1 21.2 279 47-357 59-378 (459)
370 COG1448 TyrB Aspartate/tyrosin 98.8 3.4E-07 7.4E-12 84.5 15.8 209 31-260 10-248 (396)
371 KOG1402 Ornithine aminotransfe 98.8 1E-06 2.2E-11 79.5 18.0 156 183-355 195-361 (427)
372 TIGR00461 gcvP glycine dehydro 98.7 1.2E-07 2.7E-12 98.4 12.4 154 97-275 114-277 (939)
373 TIGR03251 LAT_fam L-lysine 6-t 98.7 2.2E-06 4.8E-11 83.6 19.8 156 184-356 205-373 (431)
374 COG0161 BioA Adenosylmethionin 98.7 1.1E-06 2.3E-11 84.1 16.8 155 184-355 200-373 (449)
375 TIGR00699 GABAtrns_euk 4-amino 98.7 1.4E-06 2.9E-11 85.3 17.8 151 183-353 237-400 (464)
376 PF02347 GDC-P: Glycine cleava 98.7 2.7E-07 5.8E-12 88.1 12.3 154 96-274 114-279 (429)
377 KOG1404 Alanine-glyoxylate ami 98.6 4.6E-07 9.9E-12 83.5 12.1 125 212-356 235-366 (442)
378 PLN02974 adenosylmethionine-8- 98.6 3.4E-06 7.3E-11 87.5 19.1 157 185-357 567-750 (817)
379 COG3033 TnaA Tryptophanase [Am 98.5 2.6E-06 5.7E-11 77.8 14.7 213 97-333 84-336 (471)
380 PF05889 SLA_LP_auto_ag: Solub 98.5 1.5E-07 3.2E-12 87.9 6.5 168 91-272 55-237 (389)
381 KOG1401 Acetylornithine aminot 98.4 2.2E-05 4.7E-10 73.2 18.2 244 57-336 72-342 (433)
382 PRK08297 L-lysine aminotransfe 98.4 9.2E-06 2E-10 79.5 15.6 156 184-356 212-380 (443)
383 KOG2040 Glycine dehydrogenase 98.4 4.9E-06 1.1E-10 81.2 12.6 167 91-274 581-765 (1001)
384 KOG0628 Aromatic-L-amino-acid/ 98.4 3.2E-06 7E-11 79.6 10.8 177 86-273 107-319 (511)
385 PF12897 Aminotran_MocR: Alani 98.2 3.9E-05 8.5E-10 71.3 14.7 207 46-273 22-270 (425)
386 PRK12566 glycine dehydrogenase 98.2 5.2E-06 1.1E-10 86.1 9.3 151 97-274 129-290 (954)
387 PLN02994 1-aminocyclopropane-1 98.0 1.5E-05 3.2E-10 66.1 6.9 60 84-147 88-152 (153)
388 KOG2790 Phosphoserine aminotra 97.8 0.0002 4.2E-09 63.8 10.3 255 47-331 7-275 (370)
389 KOG1403 Predicted alanine-glyo 97.7 0.001 2.2E-08 59.8 13.1 126 212-355 232-364 (452)
390 KOG1405 4-aminobutyrate aminot 97.0 0.0028 6E-08 58.3 7.9 76 184-261 255-345 (484)
391 KOG3843 Predicted serine hydro 96.7 0.0031 6.7E-08 55.8 5.3 90 178-270 137-237 (432)
392 KOG1411 Aspartate aminotransfe 96.6 0.064 1.4E-06 49.5 13.6 199 47-265 53-279 (427)
393 KOG2040 Glycine dehydrogenase 96.3 0.01 2.2E-07 58.8 6.8 154 97-274 168-329 (1001)
394 KOG1412 Aspartate aminotransfe 96.0 0.035 7.6E-07 50.5 8.2 141 116-268 103-265 (410)
395 PF04864 Alliinase_C: Allinase 93.9 0.06 1.3E-06 49.8 3.6 153 90-273 45-211 (363)
396 COG2870 RfaE ADP-heptose synth 70.6 18 0.00038 34.7 7.2 47 183-229 129-177 (467)
397 PRK09375 quinolinate synthetas 65.0 43 0.00094 31.2 8.6 58 116-205 70-129 (319)
398 cd02067 B12-binding B12 bindin 57.8 46 0.001 25.7 6.6 50 182-231 37-89 (119)
399 COG1504 Uncharacterized conser 55.5 29 0.00063 26.8 4.6 49 180-229 47-95 (121)
400 smart00642 Aamy Alpha-amylase 55.0 15 0.00033 30.7 3.5 26 206-231 66-91 (166)
401 COG3414 SgaB Phosphotransferas 52.6 50 0.0011 24.7 5.6 70 197-272 3-75 (93)
402 COG1087 GalE UDP-glucose 4-epi 52.2 1.1E+02 0.0023 28.5 8.5 94 116-225 3-111 (329)
403 KOG2142 Molybdenum cofactor su 51.7 5.5 0.00012 40.2 0.4 163 97-272 69-239 (728)
404 PF13378 MR_MLE_C: Enolase C-t 51.0 37 0.00079 25.9 4.9 50 181-230 4-53 (111)
405 COG0296 GlgB 1,4-alpha-glucan 50.9 18 0.00039 37.0 3.8 31 202-232 205-236 (628)
406 PF00128 Alpha-amylase: Alpha 49.9 16 0.00035 33.1 3.2 29 203-231 45-73 (316)
407 PF04131 NanE: Putative N-acet 48.7 50 0.0011 28.3 5.6 72 181-258 51-122 (192)
408 PF02310 B12-binding: B12 bind 48.2 55 0.0012 25.1 5.6 50 183-232 39-90 (121)
409 PRK09441 cytoplasmic alpha-amy 47.9 20 0.00044 35.5 3.7 28 204-231 75-102 (479)
410 KOG1371 UDP-glucose 4-epimeras 46.6 37 0.0008 31.7 4.8 78 115-200 4-82 (343)
411 COG1105 FruK Fructose-1-phosph 44.9 1E+02 0.0022 28.6 7.5 55 178-233 107-169 (310)
412 COG0514 RecQ Superfamily II DN 44.7 29 0.00062 35.3 4.1 104 115-237 37-146 (590)
413 cd05126 Mth938 Mth938 domain. 42.9 84 0.0018 24.6 5.8 48 181-229 45-92 (117)
414 PF14871 GHL6: Hypothetical gl 42.8 96 0.0021 24.8 6.2 46 183-228 1-62 (132)
415 TIGR02026 BchE magnesium-proto 42.1 86 0.0019 31.3 7.1 72 181-256 49-123 (497)
416 smart00481 POLIIIAc DNA polyme 41.8 1.1E+02 0.0024 20.7 6.2 46 180-227 13-58 (67)
417 COG0552 FtsY Signal recognitio 40.9 38 0.00082 31.7 4.0 83 182-270 209-305 (340)
418 COG1954 GlpP Glycerol-3-phosph 40.1 52 0.0011 27.6 4.3 48 183-234 12-61 (181)
419 PF02571 CbiJ: Precorrin-6x re 39.7 80 0.0017 28.4 5.9 92 115-227 2-97 (249)
420 cd02072 Glm_B12_BD B12 binding 39.5 1.4E+02 0.003 23.9 6.5 49 182-230 37-88 (128)
421 COG3010 NanE Putative N-acetyl 39.3 82 0.0018 27.4 5.5 70 182-257 86-156 (229)
422 PRK00366 ispG 4-hydroxy-3-meth 39.2 78 0.0017 29.9 5.8 49 180-229 87-136 (360)
423 cd03315 MLE_like Muconate lact 39.2 92 0.002 28.0 6.3 50 180-229 188-237 (265)
424 cd02071 MM_CoA_mut_B12_BD meth 38.8 1.3E+02 0.0028 23.5 6.4 49 182-230 37-88 (122)
425 PRK13396 3-deoxy-7-phosphohept 38.2 72 0.0016 30.3 5.5 57 181-237 218-285 (352)
426 TIGR01060 eno phosphopyruvate 37.2 1E+02 0.0022 30.2 6.6 45 183-227 317-361 (425)
427 PRK02261 methylaspartate mutas 37.0 1.7E+02 0.0036 23.6 6.8 41 182-222 41-81 (137)
428 cd03319 L-Ala-DL-Glu_epimerase 36.3 87 0.0019 29.0 5.8 50 180-229 236-285 (316)
429 PLN00196 alpha-amylase; Provis 36.2 40 0.00086 33.0 3.6 28 204-231 86-113 (428)
430 COG1137 YhbG ABC-type (unclass 36.0 95 0.0021 27.2 5.4 43 186-229 149-196 (243)
431 PRK09590 celB cellobiose phosp 36.0 68 0.0015 24.5 4.2 57 197-257 3-59 (104)
432 TIGR00629 uvde UV damage endon 35.9 38 0.00083 31.5 3.3 33 200-232 189-221 (312)
433 TIGR00715 precor6x_red precorr 35.7 2.7E+02 0.0058 25.1 8.6 92 115-226 2-95 (256)
434 TIGR03586 PseI pseudaminic aci 35.5 2.6E+02 0.0056 26.3 8.7 53 182-236 144-205 (327)
435 PRK13602 putative ribosomal pr 35.1 98 0.0021 22.4 4.7 45 184-230 16-60 (82)
436 PF02571 CbiJ: Precorrin-6x re 34.8 36 0.00078 30.6 2.9 23 211-233 54-76 (249)
437 TIGR01501 MthylAspMutase methy 34.3 1.7E+02 0.0037 23.5 6.4 43 182-224 39-81 (134)
438 PLN03244 alpha-amylase; Provis 34.2 59 0.0013 34.3 4.5 31 203-233 434-464 (872)
439 PRK00077 eno enolase; Provisio 34.0 1.3E+02 0.0028 29.3 6.8 46 183-228 316-361 (425)
440 PLN02672 methionine S-methyltr 33.9 3.1E+02 0.0066 30.4 10.0 49 185-233 517-567 (1082)
441 TIGR00322 diphth2_R diphthamid 33.8 1.4E+02 0.0031 28.0 6.8 82 179-261 2-84 (332)
442 COG1435 Tdk Thymidine kinase [ 33.3 3.2E+02 0.007 23.6 8.4 89 128-229 24-116 (201)
443 PF14639 YqgF: Holliday-juncti 33.3 72 0.0016 26.2 4.2 42 182-223 50-91 (150)
444 PF13380 CoA_binding_2: CoA bi 33.0 2.3E+02 0.005 21.9 8.0 94 124-231 16-110 (116)
445 TIGR00612 ispG_gcpE 1-hydroxy- 33.0 93 0.002 29.2 5.2 39 190-229 89-127 (346)
446 cd05564 PTS_IIB_chitobiose_lic 32.9 1E+02 0.0022 23.0 4.7 55 197-257 1-55 (96)
447 PLN00191 enolase 32.7 1.4E+02 0.003 29.5 6.7 49 181-229 346-394 (457)
448 COG1091 RfbD dTDP-4-dehydrorha 32.7 2.9E+02 0.0063 25.3 8.3 46 183-228 38-97 (281)
449 KOG2865 NADH:ubiquinone oxidor 32.4 2.8E+02 0.006 25.8 7.9 98 116-225 63-170 (391)
450 PRK12595 bifunctional 3-deoxy- 31.9 1.1E+02 0.0024 29.1 5.8 54 182-235 236-299 (360)
451 PTZ00081 enolase; Provisional 31.7 1.5E+02 0.0032 29.2 6.7 48 181-228 334-381 (439)
452 PF13460 NAD_binding_10: NADH( 31.7 2.3E+02 0.0049 23.3 7.2 82 121-224 8-90 (183)
453 PRK13601 putative L7Ae-like ri 31.1 1.5E+02 0.0033 21.5 5.1 45 185-231 14-58 (82)
454 cd03313 enolase Enolase: Enola 30.8 1.5E+02 0.0033 28.7 6.7 47 182-228 315-361 (408)
455 PF04914 DltD_C: DltD C-termin 30.7 88 0.0019 25.0 4.2 49 183-232 37-97 (130)
456 PLN02361 alpha-amylase 30.5 58 0.0012 31.6 3.6 28 204-231 70-97 (401)
457 PRK08057 cobalt-precorrin-6x r 30.4 45 0.00097 30.0 2.7 90 115-227 4-96 (248)
458 PF02639 DUF188: Uncharacteriz 29.6 1.2E+02 0.0025 24.3 4.7 62 114-193 30-92 (130)
459 TIGR00640 acid_CoA_mut_C methy 29.5 2.1E+02 0.0045 22.8 6.2 47 182-228 40-89 (132)
460 COG2877 KdsA 3-deoxy-D-manno-o 29.5 1.1E+02 0.0024 27.2 4.8 41 195-235 159-202 (279)
461 PRK13397 3-deoxy-7-phosphohept 29.4 1.3E+02 0.0029 27.0 5.5 56 181-236 132-197 (250)
462 TIGR00789 flhB_rel flhB C-term 29.2 47 0.001 24.2 2.2 20 212-231 29-48 (82)
463 COG0108 RibB 3,4-dihydroxy-2-b 29.2 91 0.002 26.9 4.2 34 195-228 156-190 (203)
464 KOG3974 Predicted sugar kinase 29.1 91 0.002 28.2 4.2 45 183-230 91-139 (306)
465 PRK10785 maltodextrin glucosid 29.0 58 0.0013 33.4 3.6 49 183-231 177-247 (598)
466 PRK12313 glycogen branching en 28.9 61 0.0013 33.5 3.7 26 207-232 217-242 (633)
467 PF04273 DUF442: Putative phos 28.6 1.5E+02 0.0033 22.8 5.1 47 180-227 13-61 (110)
468 cd02070 corrinoid_protein_B12- 28.5 2.1E+02 0.0047 24.5 6.6 50 182-231 120-173 (201)
469 PRK09505 malS alpha-amylase; R 28.5 63 0.0014 33.6 3.7 25 207-231 289-313 (683)
470 TIGR01361 DAHP_synth_Bsub phos 28.5 1.9E+02 0.0041 26.2 6.4 55 181-235 142-206 (260)
471 PF13727 CoA_binding_3: CoA-bi 28.4 1.1E+02 0.0024 24.9 4.7 44 183-227 129-172 (175)
472 cd00308 enolase_like Enolase-s 28.4 1.8E+02 0.0039 25.4 6.3 50 181-230 154-203 (229)
473 cd05560 Xcc1710_like Xcc1710_l 28.4 2.3E+02 0.005 21.7 6.1 55 181-237 39-94 (109)
474 COG2099 CobK Precorrin-6x redu 28.2 3.4E+02 0.0073 24.5 7.7 91 115-227 4-97 (257)
475 TIGR02402 trehalose_TreZ malto 27.4 67 0.0014 32.5 3.6 27 206-232 156-182 (542)
476 PF02261 Asp_decarbox: Asparta 27.4 46 0.001 25.9 1.9 12 194-205 101-112 (116)
477 TIGR03649 ergot_EASG ergot alk 26.9 3.4E+02 0.0073 24.3 8.0 42 183-224 50-97 (285)
478 TIGR02403 trehalose_treC alpha 26.7 69 0.0015 32.4 3.6 26 206-231 71-96 (543)
479 cd03316 MR_like Mandelate race 26.3 1.6E+02 0.0034 27.8 5.8 51 180-230 248-298 (357)
480 PRK10933 trehalose-6-phosphate 25.9 74 0.0016 32.2 3.7 26 206-231 77-102 (551)
481 PRK05402 glycogen branching en 25.9 71 0.0015 33.6 3.6 26 207-232 312-337 (726)
482 KOG0630 Predicted pyridoxal-de 25.8 2.2E+02 0.0047 28.4 6.5 92 180-272 272-375 (838)
483 TIGR00196 yjeF_cterm yjeF C-te 25.6 1.4E+02 0.003 26.9 5.2 45 184-231 83-127 (272)
484 COG0352 ThiE Thiamine monophos 25.4 1.7E+02 0.0037 25.5 5.4 45 184-229 24-71 (211)
485 PF03652 UPF0081: Uncharacteri 25.4 2.7E+02 0.0059 22.2 6.2 54 180-233 36-98 (135)
486 TIGR02370 pyl_corrinoid methyl 25.2 2.8E+02 0.006 23.8 6.7 50 182-231 122-175 (197)
487 TIGR01362 KDO8P_synth 3-deoxy- 25.2 1.6E+02 0.0035 26.6 5.2 55 179-234 124-186 (258)
488 cd00248 Mth938-like Mth938-lik 25.1 3.2E+02 0.0068 20.9 6.5 55 181-237 38-94 (109)
489 PF02603 Hpr_kinase_N: HPr Ser 25.0 1E+02 0.0022 24.4 3.6 38 187-229 74-111 (127)
490 COG0816 Predicted endonuclease 25.0 2.5E+02 0.0055 22.8 5.9 53 179-231 36-97 (141)
491 COG2099 CobK Precorrin-6x redu 24.9 1.3E+02 0.0029 27.0 4.6 50 182-232 12-75 (257)
492 TIGR03573 WbuX N-acetyl sugar 24.9 3.7E+02 0.0081 25.3 8.0 25 210-234 147-171 (343)
493 PRK06806 fructose-bisphosphate 24.8 2.3E+02 0.0051 25.9 6.4 51 182-233 85-138 (281)
494 TIGR01927 menC_gamma/gm+ o-suc 24.4 1.7E+02 0.0037 27.1 5.5 50 181-230 215-264 (307)
495 TIGR01502 B_methylAsp_ase meth 24.3 2.5E+02 0.0054 27.3 6.8 52 179-230 304-355 (408)
496 TIGR01928 menC_lowGC/arch o-su 24.2 2.2E+02 0.0048 26.5 6.4 49 181-229 232-280 (324)
497 TIGR03677 rpl7ae 50S ribosomal 24.1 2.2E+02 0.0048 22.2 5.3 46 184-230 31-76 (117)
498 COG1066 Sms Predicted ATP-depe 23.8 2.5E+02 0.0053 27.4 6.4 47 182-228 155-215 (456)
499 PF01248 Ribosomal_L7Ae: Ribos 23.8 2.4E+02 0.0052 20.6 5.4 45 184-230 20-65 (95)
500 PRK08057 cobalt-precorrin-6x r 23.8 5.3E+02 0.012 23.1 9.7 20 211-230 116-135 (248)
No 1
>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=8.6e-47 Score=336.82 Aligned_cols=305 Identities=77% Similarity=1.193 Sum_probs=287.8
Q ss_pred cchhccccccccChHHHHHHHHHHHHhhcCceeeCCCCCCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHH
Q 018231 19 WPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQ 98 (359)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~ 98 (359)
+.++++..+...||+++..+..|+.+++.+|.|+++||+++..|++|+...+++.|++|||+.+||+++++++++|..++
T Consensus 13 ~~~~~~~~l~~~DPev~~ii~~Ek~RQ~~gieLIaSENFts~aVmeAlGS~ltNKYSEGyPG~RYYGGne~ID~iE~LCq 92 (477)
T KOG2467|consen 13 VIKLGNTPLEEVDPEVHDIIEKEKERQKRGIELIASENFTSRAVMEALGSCLTNKYSEGYPGARYYGGNEYIDQIELLCQ 92 (477)
T ss_pred hhhhhcCchhhcChHHHHHHHHHHHhhhcceeEeecccchHHHHHHHHhHHhhcccccCCCcccccCcchHHHHHHHHHH
Confidence 44667888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCCCceeEEECCChHHHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCC
Q 018231 99 KRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNES 178 (359)
Q Consensus 99 ~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~ 178 (359)
++..+.|+++++.||++|..-||+.||+++..++++|+|+|+-.+..+++|++.+|......+.....-++..||.+++.
T Consensus 93 ~RALeaF~ldp~kWGVNVQp~SGSPANfavYtall~Ph~RiMGLDLP~GGHLsHGy~T~~kkISa~SiyFeSmPYkv~~~ 172 (477)
T KOG2467|consen 93 KRALEAFGLDPEKWGVNVQPYSGSPANFAVYTALLKPHERIMGLDLPSGGHLSHGYQTPTKKISATSIYFESMPYKVDPS 172 (477)
T ss_pred HHHHHHhCCCHHHCceeeccCCCCchhhHHHhhhcCCCCeeeeccCCCCCccccccccCCceeeeeeeecccCceeeCCC
Confidence 99999999999999999999999999999999999999999999999999999999887777777777788999999989
Q ss_pred CCCCCHHHHHHHhhhhCCcEEEEcCCCCCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEeCCCC
Q 018231 179 TGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHK 258 (359)
Q Consensus 179 ~~~~d~e~l~~~i~~~~~k~v~l~~~n~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K 258 (359)
++.+|+|.||+....++||+|+...|.+.+.+|..++.+||.+.|++++.|.||..|.+..++-++||+++|+|+++.||
T Consensus 173 TG~IDYD~Le~~A~~frPk~iiaG~SaY~R~~DYaR~R~Iad~~gA~Lm~DMAHISgLVAA~vipsPFey~DiVTTTTHK 252 (477)
T KOG2467|consen 173 TGYIDYDKLEKTATLFRPKLIIAGTSAYSRLIDYARFRKIADKVGAYLMADMAHISGLVAAGVIPSPFEYCDIVTTTTHK 252 (477)
T ss_pred CCceehHHHHHHHHhcCCcEEEeccccchhhccHHHHHHHHHhcCceeehhhhhHHHHHhcccCCCcccccceeeccccc
Confidence 99999999999988889999988788899999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCceEEEEeCCcchhc-cCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhccc
Q 018231 259 SLRGPRGAMIFFRKGVKEIN-KQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLI 323 (359)
Q Consensus 259 ~l~gp~gG~l~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~~~ 323 (359)
+|.||+||+|+.++.++... ..|....|++.++++.+.+|+.+|.|+.+.|+|++.||++....+
T Consensus 253 sLRGPRg~mIFyRkGvk~~~~k~g~~i~ydlE~kINfaVFP~lQGGPHNhtIaalAvALkQa~tpe 318 (477)
T KOG2467|consen 253 SLRGPRGAMIFYRKGVKSIKPKQGKEILYDLEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTPE 318 (477)
T ss_pred cccCCcceeEEEeccCCcCCCCCCCcceechhhhhhhhccccccCCCCcchHHHHHHHHHhhCCHH
Confidence 99999999999999887664 447777789999999999999999999999999999999998874
No 2
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-45 Score=335.04 Aligned_cols=277 Identities=52% Similarity=0.826 Sum_probs=262.2
Q ss_pred ccccccChHHHHHHHHHHHHhhcCceeeCCCCCCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHH
Q 018231 25 APLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEA 104 (359)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~ 104 (359)
..+...+|+++..+.++..+++..|+|+++||++++.|++|+...+.++|.+|||+.+||+++++.+++|+.+.++.+++
T Consensus 5 ~~l~~~d~~i~~~i~~e~~rq~~~ieLIASEN~~S~aV~~A~gS~ltnKYAEGyPgkRyYgGce~VD~vE~laierak~L 84 (413)
T COG0112 5 ASLADYDPEIFEAIQQELERQREHIELIASENFTSPAVMEAQGSDLTNKYAEGYPGKRYYGGCEYVDEVEELAIERAKKL 84 (413)
T ss_pred hhHHhcCHHHHHHHHHHHHHHhhceeeeeccccCCHHHHHHHhhhhhhccccCCCCccccCCCeeHHHHHHHHHHHHHHH
Confidence 34566899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCceeEEECCChHHHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCH
Q 018231 105 FRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDY 184 (359)
Q Consensus 105 ~g~~~~~~~~~v~~tsG~~a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~ 184 (359)
||++. ++|...||+.||.+++.++++|||+|+-.+..|++|++.+. .+.+.|..+..++++++++++.+|+
T Consensus 85 Fga~~----anVQPhSGs~AN~av~~All~pGDtimgm~l~~GGHltHg~-----~v~~sG~~~~~v~Y~vd~et~~IDy 155 (413)
T COG0112 85 FGAEY----ANVQPHSGSQANQAVYLALLQPGDTIMGLDLSHGGHLTHGS-----PVNFSGKLFNVVSYGVDPETGLIDY 155 (413)
T ss_pred hCCCc----cccCCCCchHHHHHHHHHHcCCCCeEecccCCCCCcccCCC-----CCCccceeEEeEecccccccCccCH
Confidence 99997 46999999999999999999999999999999999999885 5667788888999999988899999
Q ss_pred HHHHHHhhhhCCcEEEEcCCCCCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEeCCCCcCCCCC
Q 018231 185 DQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPR 264 (359)
Q Consensus 185 e~l~~~i~~~~~k~v~l~~~n~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~ 264 (359)
|++++.+.+++||+|++..|.+....|++++.++|++.|+++++|.||.+|.+..+..+.|+..+|++++++||+|.||+
T Consensus 156 D~~~k~a~e~kPK~ii~G~SaY~r~id~~~~reIad~VGA~L~~DmAHiaGLVA~G~~p~P~~~AdvVTtTTHKTlrGPr 235 (413)
T COG0112 156 DEVEKLAKEVKPKLIIAGGSAYSRPIDFKRFREIADEVGAYLMVDMAHVAGLIAGGVHPNPLPHADVVTTTTHKTLRGPR 235 (413)
T ss_pred HHHHHHHHHhCCCEEEECccccccccCHHHHHHHHHHhCceEEehHHHHHHHHhcccCCCCCCccceEeCCcccCCCCCC
Confidence 99999999999999999899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeCCcchhccCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhccc
Q 018231 265 GAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLI 323 (359)
Q Consensus 265 gG~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~~~ 323 (359)
||+|+++++ ++.+++++..+|+..|.|..+.|+|.+.|+++..+..
T Consensus 236 GG~Il~~~e-------------el~kkin~aVFPg~qggpl~HviAakaVa~~Eal~p~ 281 (413)
T COG0112 236 GGIILTNDE-------------ELAKKINSAVFPGLQGGPLMHVIAAKAVAFKEALEPE 281 (413)
T ss_pred ceEEEeccH-------------HHHHHhhhhcCCccCCChHHHHHHHHHHHHHHHcChh
Confidence 999999985 8899999999999999999999999999999998864
No 3
>PLN02271 serine hydroxymethyltransferase
Probab=100.00 E-value=5.8e-45 Score=349.78 Aligned_cols=303 Identities=60% Similarity=0.979 Sum_probs=269.2
Q ss_pred hhccccccccChHHHHHHHHHHHHhhcCceeeCCCCCCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHH
Q 018231 21 KQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKR 100 (359)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~ 100 (359)
.|.++.++..+|+++..+.++..++.+.|+|+++||++++.|++++...+.++|++|||+.+||+++++++++|..+.++
T Consensus 123 ~~~~~~l~~~Dpei~~li~~E~~rQ~~~l~LIASEN~~S~av~~algS~ltnkYaEG~pG~Ryy~G~~~iD~iE~la~er 202 (586)
T PLN02271 123 AWGNQPLPEADPDIHELMEKEKQRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGMPGARYYTGNQYIDQIERLCCER 202 (586)
T ss_pred HHHhccHhhhCHHHHHHHHHHHHHHhcCeeeccccccCCHHHHHHhcCcccccCCCCCCCCcCCCCChhHHHHHHHHHHH
Confidence 34445678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCCCceeEEECCChHHHHHHHHhhcCCCCeeeecCCCCCcccCccccccc-cceeeeeeeeEEEecccCCCC
Q 018231 101 ALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDT-KKISAVSIFFETMPYRLNEST 179 (359)
Q Consensus 101 ~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~~ 179 (359)
..++||+++++|+++|...||+.||.+++.++++|||+|+..+.+|++|+++++.... ..+...|..++.++|++++++
T Consensus 203 a~~lF~~~~~~~gaNVQp~SGs~AN~aV~~ALl~PGD~IL~ldl~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~d~~~ 282 (586)
T PLN02271 203 ALAAFGLDSEKWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVNPQT 282 (586)
T ss_pred HHHHhCCcccccccceeeccHHHHHHHHHHHhcCCCCEEEEecCCCCCchhcccccccccccccccceEEEEEccccccc
Confidence 9999999998888999999999999999999999999999999999999998764321 245667777888999898778
Q ss_pred CCCCHHHHHHHhhhhCCcEEEEcCCCCCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEeCCCCc
Q 018231 180 GYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKS 259 (359)
Q Consensus 180 ~~~d~e~l~~~i~~~~~k~v~l~~~n~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~ 259 (359)
+.+|++++++.+...+||+|+++.+.+....|+++|+++|+++|+++++|++|.+|.++.+..+.|+.++|++++++|||
T Consensus 283 g~IDyd~lek~a~~~rPKLII~g~Saypr~~D~~~i~eIAdevGA~LmvD~AH~aGLIa~g~~~sP~~~aDvvt~TTHKt 362 (586)
T PLN02271 283 GYIDYDKLEEKALDFRPKILICGGSSYPREWDYARFRQIADKCGAVLMCDMAHISGLVAAKECVNPFDYCDIVTSTTHKS 362 (586)
T ss_pred CccCHHHHHHHhhhcCCeEEEECchhccCcCCHHHHHHHHHHcCCEEEEECcccccccccCcCCCCCcCCcEEEeCCccc
Confidence 89999999996655599999998777888999999999999999999999999999999998888888899999999999
Q ss_pred CCCCCceEEEEeCCcchhccCCcchh------hhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhccc
Q 018231 260 LRGPRGAMIFFRKGVKEINKQGKEVF------YDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLI 323 (359)
Q Consensus 260 l~gp~gG~l~~~~~~~~~~~~g~~~~------~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~~~ 323 (359)
|.||+||+|++++++++...++...| +++.++++...+|+..|.|..+.|+|+++|++++....
T Consensus 363 LrGPrGG~I~~r~~~~~~~~g~~gs~s~~~~~~d~~~kI~~aVfPglqgGphn~~IAalAvalkea~~~e 432 (586)
T PLN02271 363 LRGPRGGIIFYRKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFPSLQGGPHNNHIAALAIALKQVATPE 432 (586)
T ss_pred CCCCCceEEEecccccccccCCccccccccccHHHHHHhhcccCCccccChhHHHHHHHHHHHHHHhChH
Confidence 99999999999887665544443322 46788899999998888888888999999999988753
No 4
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []. The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....
Probab=100.00 E-value=8.9e-45 Score=340.71 Aligned_cols=296 Identities=55% Similarity=0.924 Sum_probs=236.3
Q ss_pred ccccChHHHHHHHHHHHHhhcCceeeCCCCCCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcC
Q 018231 27 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFR 106 (359)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g 106 (359)
+++.||++++.+.++..++++.|+|+|+||.++|.|++++...+.++|.+|+|+.++|++.+.++++|+.+.++++++||
T Consensus 1 l~~~d~ei~~li~~e~~rq~~~l~LiaSEN~~Sp~v~~al~S~l~nkyaeg~pg~ryy~G~~~id~iE~la~~ra~~lF~ 80 (399)
T PF00464_consen 1 LKEFDPEIYELIEKEEERQRSTLNLIASENYMSPAVREALGSDLTNKYAEGYPGKRYYGGCEYIDEIEELAIERAKELFG 80 (399)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHSEE-CTT-----HHHHHHHTSGGGGS-TTEETTEESSSSTHHHHHHHHHHHHHHHHHHT
T ss_pred CcccCHHHHHHHHHHHHHHhcCccccCcccccCHHHHHHhCCcceeeccccCCCcccccCcchhhHHHHHHHHHHHHHhC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceeEEECCChHHHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHH
Q 018231 107 LDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQ 186 (359)
Q Consensus 107 ~~~~~~~~~v~~tsG~~a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~ 186 (359)
+++++|+++|...||+.||.+++.+|++|||+|+..++.+++|++.++....+.+...+..+..++++++++++.+|+|+
T Consensus 81 ~~~~~w~anvqp~SGs~An~av~~aLl~pGD~Im~l~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~~d~~~~~ID~d~ 160 (399)
T PF00464_consen 81 AEPKEWYANVQPHSGSQANLAVYMALLKPGDTIMGLSLPHGGHLSHGSSVNFKKISASGLYFESVPYPVDPDTGLIDYDE 160 (399)
T ss_dssp -STTTEEEE---SSHHHHHHHHHHHHT-TT-EEEEEEGGGT--GGGT-TTSHSBSSHHHHHSEEEEEEB-TTTSSB-HHH
T ss_pred CCcccceEEeecCCchHHHHHHHHHHHhhcCcEEecChhhcccccccccccccccccccceEEEEeeeeecCCCeECHHH
Confidence 99999999999999999999999999999999999999999999888755544445567778889999998889999999
Q ss_pred HHHHhhhhCCcEEEEcCCCCCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEeCCCCcCCCCCce
Q 018231 187 LEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGA 266 (359)
Q Consensus 187 l~~~i~~~~~k~v~l~~~n~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~gG 266 (359)
+++.+.+++||+|++..|+++...|++++.+||++.|+++++|.+|.+|.+..++.++|+.++|++++|+||+|.||+||
T Consensus 161 l~~~a~~~kPklIi~G~S~y~~~~d~~~~reIad~vga~l~~D~sH~~GLIa~g~~~~P~~~ADvvt~sThKtl~GPrgg 240 (399)
T PF00464_consen 161 LEKLAKEHKPKLIICGASSYPRPIDFKRFREIADEVGAYLMADISHIAGLIAGGLFPNPFPYADVVTGSTHKTLRGPRGG 240 (399)
T ss_dssp HHHHHHHH--SEEEEE-SSTSS---HHHHHHHHHHTT-EEEEE-TTTHHHHHTTSS--GCCTSSEEEEESSGGG-SSS-E
T ss_pred HHHHHhhcCCCEEEECchhccCccCHHHHHHHHHhcCcEEEecccccccceehheecCccccceEEEeeccccccccCce
Confidence 99999988999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCcchhccCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhcc
Q 018231 267 MIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTL 322 (359)
Q Consensus 267 ~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~~ 322 (359)
+|++++..+.....+.....++.++++...+|+..|+|+.+.++|++.|++++.+.
T Consensus 241 iI~~~~~~~~~~~~~~~~~~~l~~~I~~avfP~~qg~~h~~~iaalAval~ea~~~ 296 (399)
T PF00464_consen 241 IILTNKGSKNVDKKGKEIDEELAEKIDSAVFPGLQGGPHMHRIAALAVALKEALSP 296 (399)
T ss_dssp EEEES-SEEEE-TTS-EEEHHHHHHHHHHHTTTT-SS--HHHHHHHHHHHHHHTSH
T ss_pred EEEEcCCccccCCcccccHHHHHHHhccccCCCcccCcchhHHHHHHHHHhcccCH
Confidence 99999554333233333334788999999999999999999999999999998765
No 5
>PLN03226 serine hydroxymethyltransferase; Provisional
Probab=100.00 E-value=4.1e-40 Score=320.68 Aligned_cols=309 Identities=77% Similarity=1.186 Sum_probs=261.9
Q ss_pred ccCCCcchhccccccccChHHHHHHHHHHHHhhcCceeeCCCCCCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHH
Q 018231 14 KNGVTWPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMA 93 (359)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l 93 (359)
|+-+.|+++..+.++..||+++..+.++..++...|+|+++||++++.|++++...+.++|..|+++.++|+|++..+++
T Consensus 2 ~~~~~~~~~~~~~~~~~d~~~~~~i~~e~~~q~~~l~liasen~~s~~v~~a~~s~~~~ky~~G~~g~r~~~G~~~~d~l 81 (475)
T PLN03226 2 KSMVSVPKWGNAPLEEVDPEIADIIEKEKRRQWKGLELIASENFTSRAVMEALGSCLTNKYSEGLPGARYYGGNEYIDQI 81 (475)
T ss_pred cchhhhhhcchhhhhhcCHHHHHHHHHHHHHHHcCeeEecCCccCCHHHHHHHhhHHhccccCCCCCCcCcCCChhHHHH
Confidence 45566788877778889999999999999999999999999999999999999999988899999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEec
Q 018231 94 ESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPY 173 (359)
Q Consensus 94 ~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~ 173 (359)
|+.+++..+++|+.+.+.|.+++.+.||+.||.+++.++++|||+|+..+.++++|++..+......+...+..+..+++
T Consensus 82 E~~~~~~~~~~f~~~~~~~~~nv~~~SG~~AN~av~~aL~~pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~~~~~~y 161 (475)
T PLN03226 82 ETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFAVYTALLQPHDRIMGLDLPHGGHLSHGYQTDGKKISATSIYFESMPY 161 (475)
T ss_pred HHHHHHHHHHHhCCCcceeEEecCcCchHHHHHHHHHHhCCCCCEEEECCCCcCcchhhhhhhcccccccceEEEEeeee
Confidence 99999999999999887665566678999999999999999999999988888888876553222223334444555677
Q ss_pred ccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEE
Q 018231 174 RLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVT 253 (359)
Q Consensus 174 ~~~~~~~~~d~e~l~~~i~~~~~k~v~l~~~n~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~ 253 (359)
.++++++.+|+++|++.+.+.++++|+++.+++|...|+++|.++|+++|+++++|+||++|+++.+....++.++|+++
T Consensus 162 ~~~~~~g~iD~d~Le~~l~~~~pklIv~~~S~~s~~~D~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~~p~~~~Div~ 241 (475)
T PLN03226 162 RLDESTGLIDYDKLEKKAMLFRPKLIIAGASAYPRDWDYARMRKIADKVGALLMCDMAHISGLVAAQEAASPFEYCDVVT 241 (475)
T ss_pred eecCCCCCcCHHHHHHHHhhcCCeEEEEecCcCCCccCHHHHHHHHHHcCCEEEEEchhhhCcccCCCCCCCCCCCeEEE
Confidence 77767889999999999976688887776778999999999999999999999999999999999887777777899999
Q ss_pred eCCCCcCCCCCceEEEEeCCcchhccCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhcc
Q 018231 254 TTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTL 322 (359)
Q Consensus 254 ~s~~K~l~gp~gG~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~~ 322 (359)
+++||||.||.||+++++++..+...+|...++++.+.++...++...|+|+.+.++|+.+|++++.++
T Consensus 242 ~t~hK~L~GP~Gg~I~~~~~~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~~i~~~ 310 (475)
T PLN03226 242 TTTHKSLRGPRGGMIFFRKGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTP 310 (475)
T ss_pred ecCcccccCCCceEEEEchhhcccccCCCccHHHHHHHhccccCCccCCCchHHHHHHHHHHHHHHhCc
Confidence 999999999999999998865444455544444665566666677767889999999999999999865
No 6
>PRK13580 serine hydroxymethyltransferase; Provisional
Probab=100.00 E-value=1.4e-38 Score=304.98 Aligned_cols=289 Identities=35% Similarity=0.596 Sum_probs=246.8
Q ss_pred ccccccChHHHHHHHHHHHHhhcCceeeCCCCCCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHH
Q 018231 25 APLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEA 104 (359)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~ 104 (359)
+.++..||+++..+.+|..++++.|+|+++||.+++.|++++...+.++|.+|+|+.+||+++++++++|..+.++.+++
T Consensus 28 ~~l~~~d~~~~~~~~~e~~rq~~~l~LiasEN~~s~~v~~a~~s~l~nkyaeg~pg~ryy~g~~~~d~ie~l~~~ra~~l 107 (493)
T PRK13580 28 DVILHVEPRIAEAIRQELADQRSSLKLIASENYSSLAVQLAMGNLLTDKYAEGTPGHRFYAGCQNVDTVEWEAAEHAKEL 107 (493)
T ss_pred HHHHhhCHHHHHHHHHHHHHHhcCceEecccccCCHHHHHHhcccccccCcCCCCCccccCCCchHHHHHHHHHHHHHHH
Confidence 34677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCceeEEECCChHHHHHHHHhhcCC-------------------------------CCeeeecCCCCCcccCcc
Q 018231 105 FRLDPEKWGVNVQSLSGSPSNFQVYTALLKP-------------------------------HDRIMALDLPHGGHLSHG 153 (359)
Q Consensus 105 ~g~~~~~~~~~v~~tsG~~a~~~~~~al~~~-------------------------------Gd~Vl~~~~~~~~~~~~~ 153 (359)
||++. ++|...||+.||.+++.++++| ||+|+..+.++++|++.+
T Consensus 108 f~a~~----anvqp~Sg~~An~~v~~all~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~GGHlthg 183 (493)
T PRK13580 108 FGAEH----AYVQPHSGADANLVAFWAILAHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGHLTHG 183 (493)
T ss_pred hCCCc----ccccCCCcHHHHHHHHHHHhcccccCcchhccccccccccchhhhhhhhccCCCCEEEeecCCCCCeeecC
Confidence 99988 4699999999999999999976 899999999999999887
Q ss_pred ccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc-CCCCCChhhHHHHHHHHHHcCCEEEEeccc
Q 018231 154 YQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASAYARLYDYERIRKVCNKQKAIMLADMAH 232 (359)
Q Consensus 154 ~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n~g~~~~l~~i~~la~~~~~~vivD~a~ 232 (359)
+ ...+.+..+..++++++++++.+|++++++.+.+ +++.|+++ .+|++...|+++|.++|+++|+++++|+||
T Consensus 184 ~-----~~n~~~~~~~~~~y~vd~~~g~iD~d~l~~~~~~-~~plvii~g~S~~~~~~dl~~i~eia~~~gA~L~VD~AH 257 (493)
T PRK13580 184 F-----RPNISGKMFHQRSYGVDPDTGLLDYDEIAALARE-FKPLILVAGYSAYPRRVNFAKLREIADEVGAVLMVDMAH 257 (493)
T ss_pred c-----ccchhhheeeeEecccCcccCccCHHHHHHHHhh-cCCEEEEeCccccCCCcCHHHHHHHHHHcCCEEEEECch
Confidence 5 4445666667778888867789999999999998 55555555 888888889999999999999999999999
Q ss_pred cccccccCCCC---CCCCCceEEEeCCCCcCCCCCceEEEEeCCcchhccCCcchhhhHHHhhccccCCCCCCCCcHHHH
Q 018231 233 ISGLVAAGVIP---SPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTI 309 (359)
Q Consensus 233 ~~g~~~~~~~~---~~~~~~D~v~~s~~K~l~gp~gG~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i 309 (359)
++|+++.+... .++.++|++++|+||+|.||.||++++++ ++.+.++.. .|..+|++..+.+
T Consensus 258 ~~Gligg~~~~~~~~~~~~~D~vtgT~hKaL~GP~GG~I~~~~--------------~l~~~L~~a-~P~i~gg~l~p~i 322 (493)
T PRK13580 258 FAGLVAGKVFTGDEDPVPHADIVTTTTHKTLRGPRGGLVLAKK--------------EYADAVDKG-CPLVLGGPLPHVM 322 (493)
T ss_pred hhceeccccchhhcCCCCCCcEEEeCChhhccCCCeEEEEecH--------------HHHHHHhhC-CCcccCCCccHHH
Confidence 99999866633 34457999999999999999999999988 666666555 4777899999999
Q ss_pred HHHHHHHHHHhccccchhHhhhccccchhhh
Q 018231 310 TGLAVALKQVCTLITFSHIHVFSLHVYPAFV 340 (359)
Q Consensus 310 ~al~~Al~~~~~~~~~~~~~~~~l~~~~~~~ 340 (359)
+|+..|+.++.++.. ..++..+..+.+++
T Consensus 323 AA~avAl~e~~~~ef--~~y~~~l~~Na~~L 351 (493)
T PRK13580 323 AAKAVALAEARTPEF--QKYAQQVVDNARAL 351 (493)
T ss_pred HHHHHHHHHHhCccH--HHHHHHHHHHHHHH
Confidence 999999998875422 22333444444443
No 7
>PTZ00094 serine hydroxymethyltransferase; Provisional
Probab=100.00 E-value=6.1e-37 Score=299.10 Aligned_cols=289 Identities=67% Similarity=1.106 Sum_probs=235.7
Q ss_pred ccccccccChHHHHHHHHHHHHhhcCceeeCCCCCCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHH
Q 018231 23 LNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRAL 102 (359)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a 102 (359)
++..++..||++++.+.++..++++.|+|++++|.++|.|++++...+.+.|..|+|+.+++.+.+..+.+++.+++.++
T Consensus 11 ~~~~~~~~d~~~~~~~~~~~~~~~~~l~l~~sen~~s~~v~~~~~~~l~~~y~~g~p~s~~~~g~~~~~~iE~~ar~~~a 90 (452)
T PTZ00094 11 LNQSLKEADPELYELIEKEKERQIEGLELIASENFTSRAVLECLGSCFTNKYAEGLPGNRYYGGNEVVDKIENLCQKRAL 90 (452)
T ss_pred hhhhHhhhCHHHHHHHHHHHHHHHcCeeEecccccCCHHHHHHhcchhhccccCCCCCccccccchHHHHHHHHHHHHHH
Confidence 34457888999999999987788899999999999999999999999999898899999999999999999987999999
Q ss_pred HHcCCCCCCCceeEEECCChHHHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCC
Q 018231 103 EAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYI 182 (359)
Q Consensus 103 ~~~g~~~~~~~~~v~~tsG~~a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~ 182 (359)
++||+++++|..++.++||+.+|..++.+++++||+|++...+|+++++++...........+..+..++++++ .++.+
T Consensus 91 ~lf~a~~~~~~~~~~~~sgt~an~~v~~al~~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~-~~g~i 169 (452)
T PTZ00094 91 EAFGLDPEEWGVNVQPYSGSPANFAVYTALLQPHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVN-EKGLI 169 (452)
T ss_pred HHhCCCcccceeecCCCchHHHHHHHHHHhcCCCCEEEecccccCCcccccccccccccccceeeeeeeecccC-CCCCc
Confidence 99999876643333344566699988999999999999999999999988754322222223333444555566 35889
Q ss_pred CHHHHHHHhhhhCCcEEEEcCCCCCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEeCCCCcCCC
Q 018231 183 DYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRG 262 (359)
Q Consensus 183 d~e~l~~~i~~~~~k~v~l~~~n~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~g 262 (359)
|+++|++.+++.+++++++..+++|...|+++|.++|+++|+++++|++|++|.++.+....++.++|++++|+||||+|
T Consensus 170 d~~~L~~~l~~~~~~lvi~~~s~~g~~~di~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~~~~~~~D~l~~S~hK~l~G 249 (452)
T PTZ00094 170 DYDKLEELAKAFRPKLIIAGASAYPRDIDYKRFREICDSVGAYLMADIAHTSGLVAAGVLPSPFPYADVVTTTTHKSLRG 249 (452)
T ss_pred CHHHHHHHHHHhCCCEEEEeCCCCCCccCHHHHHHHHHHcCCEEEEeccchhccccCCCCCCCCCCCcEEEcCCccCCCC
Confidence 99999999976578888776667999999999999999999999999999999999887666666799999999999999
Q ss_pred CCceEEEEeCCcchhccCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhcc
Q 018231 263 PRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTL 322 (359)
Q Consensus 263 p~gG~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~~ 322 (359)
|.||+++++++... .+...+....++...|+++...++|+.+|++++...
T Consensus 250 P~Gg~l~~~~~~~~----------~l~~~~~~~~~p~~~G~~~~~~iaal~~al~~~~~~ 299 (452)
T PTZ00094 250 PRSGLIFYRKKVKP----------DIENKINEAVFPGLQGGPHNHQIAAIAVQLKEVQSP 299 (452)
T ss_pred CCceEEEEecccch----------HHHHhhccccCCCCCCCchHHHHHHHHHHHHHHhCh
Confidence 99999999874211 123333334455556899999999999999998653
No 8
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-33 Score=267.32 Aligned_cols=288 Identities=21% Similarity=0.225 Sum_probs=216.7
Q ss_pred CceeeC-CCCCCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-HH
Q 018231 48 GLELIP-SENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SN 125 (359)
Q Consensus 48 ~i~l~~-~~~~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~ 125 (359)
.+-|+. .....|..|.+++.+++...+ .+.....+.......+..+.+|+.+++++|+++.. +|+||+|+| ++
T Consensus 23 ~vylD~aa~~~~p~~V~~a~~~~~~~~~--an~~r~~~~~~~~~t~~~e~aRe~va~~~~a~~~~---eIvft~~tT~al 97 (405)
T COG0520 23 LVYLDNAATSQKPQAVLDAVAEYYRRYN--ANVHRGAHTLAEEATDLYEAAREAVARFLNADSSD---EIVFTRGTTEAL 97 (405)
T ss_pred eEEecCcccccCCHHHHHHHHHHHHhhc--CCcCcccchHHHHHHHHHHHHHHHHHHHhCCCCCC---eEEEeCChhHHH
Confidence 355543 334579999999999886533 22221111222334555667999999999998522 599999999 66
Q ss_pred HHHHHhh---cCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc
Q 018231 126 FQVYTAL---LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG 202 (359)
Q Consensus 126 ~~~~~al---~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~ 202 (359)
..+..++ +++||+|++.+.+|+++..||....+ ..|++++.+| .+ +++.+|.|++++.+++ +||+|.++
T Consensus 98 n~va~~l~~~~~~gdeIv~s~~EH~sn~~pw~~~~~----~~Ga~v~~i~--~~-~~g~~~~~~~~~~i~~-~Tklvais 169 (405)
T COG0520 98 NLVARGLGRSLKPGDEIVVSDLEHHSNIVPWQELAK----RTGAKVRVIP--LD-DDGLLDLDALEKLITP-KTKLVALS 169 (405)
T ss_pred HHHHHHhhhhhcCCCEEEEccCcchhhHHHHHHHHH----hcCcEEEEEe--cC-CCCCcCHHHHHHhcCC-CceEEEEE
Confidence 6577777 79999999999999999999885544 2466677776 45 6789999999999988 99999998
Q ss_pred -CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEeCCCCcCCCCCc-eEEEEeCCcch---
Q 018231 203 -ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKE--- 276 (359)
Q Consensus 203 -~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~--- 276 (359)
.|| +|.+.|+++|+++||++|+++++|++|++|+.++|++..+ +|++++|+||||+||.| |++++++++..
T Consensus 170 ~vSn~tG~~~pv~~I~~la~~~ga~v~VDaaq~~~h~~idv~~l~---~Df~afsgHKwl~gP~GiGvLy~r~~~l~~l~ 246 (405)
T COG0520 170 HVSNVTGTVNPVKEIAELAHEHGALVLVDAAQAAGHLPIDVQELG---CDFLAFSGHKWLLGPTGIGVLYVRKELLEELE 246 (405)
T ss_pred CccccccccchHHHHHHHHHHcCCEEEEECccccCccCCCchhcC---CCEEEEcccccccCCCceEEEEEchHHHhhcC
Confidence 777 9999999999999999999999999999999999998888 99999999999999999 99999998633
Q ss_pred -hccCCcchhhhHH-HhhccccCCCCC--CCCcHHHHHHHHHHHHHHhccccchhHhhhccccchh---hhhcccCCCcc
Q 018231 277 -INKQGKEVFYDYE-EKINQAVFPGLQ--GGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPA---FVSNQNNSENI 349 (359)
Q Consensus 277 -~~~~g~~~~~~~~-~~~~~~~~~~~~--gt~~~~~i~al~~Al~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~ 349 (359)
...||+...+... ........+.++ ||||+..+.++.+|++++.+. ++.+++.+..+.... -++...+++++
T Consensus 247 P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~~i-g~~~i~~~e~~L~~~~~~~L~~~~~v~i~ 325 (405)
T COG0520 247 PFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEI-GMEAIEAHERELTEYLLEGLSELPGVEIY 325 (405)
T ss_pred CcccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHhcCCCeEEe
Confidence 2334443321111 122222334444 999999999999999998874 466666665444433 35556666677
Q ss_pred ccC
Q 018231 350 EED 352 (359)
Q Consensus 350 ~~~ 352 (359)
|..
T Consensus 326 g~~ 328 (405)
T COG0520 326 GPP 328 (405)
T ss_pred cCC
Confidence 654
No 9
>PRK13034 serine hydroxymethyltransferase; Reviewed
Probab=100.00 E-value=3.2e-32 Score=262.92 Aligned_cols=278 Identities=51% Similarity=0.807 Sum_probs=219.1
Q ss_pred hccccccccChHHHHHHHHHHHHhhcCceeeCCCCCCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHH
Q 018231 22 QLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRA 101 (359)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~ 101 (359)
++++.++++||+++..+.++..++.+.++|.+++|+++|.|++++...+.++|..|+++.+++++.+...++|+.+++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sen~~~p~v~~a~~~~~~~~~~~g~~gsr~~~G~~~~~~lE~~~~~~l 83 (416)
T PRK13034 4 FFSDSLEEYDDEVFAAINKELERQQDHLELIASENFTSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEFVDEVEALAIERA 83 (416)
T ss_pred hhhhhHhhhCHHHHHHHHHHHHHHhcCeeecccccCCCHHHHHHhcchhhcCCCCCCCCCcccCCChHHHHHHHHHHHHH
Confidence 35778899999999999999888889999999999999999999999987778888888899888888999998788899
Q ss_pred HHHcCCCCCCCceeEEECCChHHHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCC
Q 018231 102 LEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGY 181 (359)
Q Consensus 102 a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~ 181 (359)
++++|.+. +.+.+.||+.|+.+++.++++|||+|++....|.+++..+.. ....+.....+.++++..++.
T Consensus 84 a~l~g~~~----alv~~~SG~~A~~~~l~al~~~GD~Vl~~~~~~~~~~~~g~~-----~~~~~~~~~~~~~~~~~~~~~ 154 (416)
T PRK13034 84 KQLFGCDY----ANVQPHSGSQANGAVYLALLKPGDTILGMSLSHGGHLTHGAK-----VSLSGKWYNAVQYGVDRLTGL 154 (416)
T ss_pred HHHhCCCc----eEEecCCcHHHHHHHHHHhcCCCCEEEEcCccceeeeecCCc-----ceeccceeeeEEcccccccCC
Confidence 99999875 224456887799999999999999999999888775332210 111122222234455545678
Q ss_pred CCHHHHHHHhhhhCCcEEEEcCCCCCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEeCCCCcCC
Q 018231 182 IDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLR 261 (359)
Q Consensus 182 ~d~e~l~~~i~~~~~k~v~l~~~n~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~ 261 (359)
+|++++++.+...++|+|++..+.+|...|+++|.++|+++|+++++|++|++|.+..+....++.++|++++|+||+++
T Consensus 155 ~d~~~le~~l~~~~~klVi~~~~~~g~~~dl~~l~~la~~~g~~livD~Aha~G~~~~g~~~~~~~~~Di~~~s~~K~l~ 234 (416)
T PRK13034 155 IDYDEVEELAKEHKPKLIIAGFSAYPRELDFARFREIADEVGALLMVDMAHIAGLVAAGEHPNPFPHAHVVTTTTHKTLR 234 (416)
T ss_pred cCHHHHHHHHhhcCCeEEEECCCccccccCHHHHHHHHHHcCCEEEEeCcccccCcccCCCCCCCCCceEEEEeCcccCC
Confidence 99999999886557888887656688888999999999999999999999999998876655555569999999999999
Q ss_pred CCCceEEEEeCCcchhccCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhc
Q 018231 262 GPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCT 321 (359)
Q Consensus 262 gp~gG~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~ 321 (359)
||.||+++++++ .+..+++...+++..++++.+.++|+..++.++..
T Consensus 235 g~~GG~v~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~aa~~~al~~~~~ 281 (416)
T PRK13034 235 GPRGGMILTNDE-------------EIAKKINSAVFPGLQGGPLMHVIAAKAVAFGEALQ 281 (416)
T ss_pred CCCCeEEEECcH-------------HHHHHHHhhcCCcccCCccHHHHHHHHHHHHHHhC
Confidence 999999888774 34444444444544455666677777777777654
No 10
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed
Probab=100.00 E-value=1.1e-31 Score=260.09 Aligned_cols=275 Identities=55% Similarity=0.845 Sum_probs=214.4
Q ss_pred ccccccChHHHHHHHHHHHHhhcCceeeCCCCCCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHH
Q 018231 25 APLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEA 104 (359)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~ 104 (359)
..++.+||+++..++++...+++.++|.++++++++.|++++..++.+.|+.|+++.+++.+.+..+.+++.+++.++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~ 83 (416)
T PRK00011 4 DNLAEYDPEIADAIEQELKRQEEHIELIASENFVSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKEL 83 (416)
T ss_pred hhhhhcCHHHHHHHHHHHHHHhcCeeeecccCcCCHHHHHHHhchhhcccccCCCCccccccchHHHHHHHHHHHHHHHH
Confidence 34588999999999988777889999999999999999999988877667667777777777777888887788899999
Q ss_pred cCCCCCCCceeEEECCChHHHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCH
Q 018231 105 FRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDY 184 (359)
Q Consensus 105 ~g~~~~~~~~~v~~tsG~~a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~ 184 (359)
+|+++. .|++++|+.++..++.++++|||+|++++++|++++....... ....|.++ +.++.+.+++.+|+
T Consensus 84 ~g~~~~----~i~~~sgt~al~~~l~~l~~~gd~Vl~~~~~~~~~~~~~~~~~---~~~~g~~~--~~~~~~~~~~~~d~ 154 (416)
T PRK00011 84 FGAEYA----NVQPHSGSQANAAVYFALLKPGDTILGMDLAHGGHLTHGSPVN---FSGKLYNV--VSYGVDEETGLIDY 154 (416)
T ss_pred hCCCce----eeecCCchHHHHHHHHHhcCCCCEEEEeccccCCccccccccc---cccceeeE--eecCcCcccCCcCH
Confidence 999763 4777888778887889999999999999999988765443111 11123334 34445544578999
Q ss_pred HHHHHHhhhhCCcEEEEcCCCCCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEeCCCCcCCCCC
Q 018231 185 DQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPR 264 (359)
Q Consensus 185 e~l~~~i~~~~~k~v~l~~~n~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~ 264 (359)
+++++.+++.++++++++.+++|...|+++|.++|+++|+++|+|++|+.|....+.....+.++|++++|+||+|+||+
T Consensus 155 ~~l~~~i~~~~~k~v~~~~~~~~~~~~~~~I~~la~~~~~~livD~a~~~g~~~~g~~~~~~~~~di~~~S~~K~l~g~~ 234 (416)
T PRK00011 155 DEVEKLALEHKPKLIIAGASAYSRPIDFKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVPHADVVTTTTHKTLRGPR 234 (416)
T ss_pred HHHHHHHHhcCCCEEEECCCcCCCccCHHHHHHHHHHcCCEEEEECcchhcccccCccCCCCCCCcEEEecCCcCCCCCC
Confidence 99999997557999998767788778999999999999999999999988876433222223358999999999999999
Q ss_pred ceEEEEeCCcchhccCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhc
Q 018231 265 GAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCT 321 (359)
Q Consensus 265 gG~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~ 321 (359)
||+++++++ ++.+++.....++..+++....++|+..|+..+..
T Consensus 235 gg~i~~~~~-------------~~~~~l~~~~~~~~~~~~~~~~~aa~~~a~~~~~~ 278 (416)
T PRK00011 235 GGLILTNDE-------------ELAKKINSAVFPGIQGGPLMHVIAAKAVAFKEALE 278 (416)
T ss_pred ceEEEeCCH-------------HHHHHHHHHhCccccCCccHHHHHHHHHHHHHHHh
Confidence 999999753 45555554445555677777788887777766553
No 11
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=100.00 E-value=2e-31 Score=257.23 Aligned_cols=273 Identities=60% Similarity=0.932 Sum_probs=216.5
Q ss_pred ccChHHHHHHHHHHHHhhcCceeeCCCCCCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCC
Q 018231 29 VVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLD 108 (359)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~ 108 (359)
+++++++..+.++...+++.++|.++++++++.|++++.+++..+|..|+++.++|.+.+..+++++.+++.+++++|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~ 81 (402)
T cd00378 2 DVDPEIAEIIKKENERQRETLELIASENFTSPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGAE 81 (402)
T ss_pred CcCHHHHHHHHHHHHHHHhCeeeeccCCcCCHHHHHHhcccccccccCCCCCCcccCCchHHHHHHHHHHHHHHHHhCCC
Confidence 57899999999987777889999999999999999999998877787788888888888888999988889999999997
Q ss_pred CCCCceeEEECCChHHHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHH
Q 018231 109 PEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLE 188 (359)
Q Consensus 109 ~~~~~~~v~~tsG~~a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~ 188 (359)
.. .|++++|+.++..++.++++|||+|++++++|+++...+... .+...|.++..++++.+++++.+|+++++
T Consensus 82 ~~----~v~~~sgt~a~~~~l~~l~~~Gd~Vl~~~~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~id~~~l~ 154 (402)
T cd00378 82 YA----NVQPHSGSQANLAVYFALLEPGDTIMGLDLSHGGHLTHGSFT---KVSASGKLFESVPYGVDPETGLIDYDALE 154 (402)
T ss_pred ce----eeecCCcHHHHHHHHHHhcCCCCEEEEecCccCccccccccc---cccccceeEEEecCCcCcccCCcCHHHHH
Confidence 63 477778777888899999999999999999998876644320 13345655656665554336899999999
Q ss_pred HHhhhhCCcEEEEcCCCCCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEeCCCCcCCCCCceEE
Q 018231 189 KSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMI 268 (359)
Q Consensus 189 ~~i~~~~~k~v~l~~~n~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~gG~l 268 (359)
+.+.+.++++++++.+++|...++++|.++|+++|+++|+|++|+.|....+....++.++|++++|+||+|+||+||++
T Consensus 155 ~~i~~~~~~~v~~~~~~~~~~~~~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~~~dv~~~s~sK~l~G~~gg~i 234 (402)
T cd00378 155 KMALEFKPKLIVAGASAYPRPIDFKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLPGADVVTTTTHKTLRGPRGGLI 234 (402)
T ss_pred HHHHhCCCCEEEecCcccCCCcCHHHHHHHHHhcCCEEEEEccchhhhhhcccCCCcccCCcEEEeccccCCCCCCceEE
Confidence 99865489999888667788889999999999999999999999887654332222223579999999999999999999
Q ss_pred EEeCCcchhccCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhc
Q 018231 269 FFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCT 321 (359)
Q Consensus 269 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~ 321 (359)
+++++ ++.+++.....++..+++....++++..|+.++..
T Consensus 235 ~~~~~-------------~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~ 274 (402)
T cd00378 235 LTRKG-------------ELAKKINSAVFPGLQGGPHLHVIAAKAVALKEALE 274 (402)
T ss_pred EeccH-------------HHHHHHHHHhCccccCCchHHHHHHHHHHHHHHhh
Confidence 98773 44455444444555677777888888888876665
No 12
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=99.98 E-value=1.8e-31 Score=246.35 Aligned_cols=252 Identities=19% Similarity=0.274 Sum_probs=201.9
Q ss_pred CCCCCCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHh
Q 018231 53 PSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTA 131 (359)
Q Consensus 53 ~~~~~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~a 131 (359)
+...++.|+|+++|..++...| |+|.+.+..|.+....++ .+|+.+++++|+++. +|+||||++ ++.+++.+
T Consensus 8 ~ATTp~~~~v~~~m~~~~~~~f--gNPsS~H~~G~~A~~~ve-~AR~~iA~llga~~~----eIiFTSG~TEsnNlaI~g 80 (386)
T COG1104 8 AATTPVDPEVLEAMLPYLTEVF--GNPSSLHSFGREARKAVE-EAREQIAKLLGADPE----EIIFTSGATESNNLAIKG 80 (386)
T ss_pred cccCCCCHHHHHHHHHHHHhhc--CCccchhHhHHHHHHHHH-HHHHHHHHHhCCCCC----eEEEecCCcHHHHHHHHh
Confidence 3455789999999999999877 777775544545555555 489999999999885 499999999 76666665
Q ss_pred --hc----CCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc-CC
Q 018231 132 --LL----KPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-AS 204 (359)
Q Consensus 132 --l~----~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~-~~ 204 (359)
.. +.|.+|+++..+|++++.+...+.. .|.++.+++ ++ .++.+|+++|++++++ +|.+|.+. .+
T Consensus 81 ~~~a~~~~~~~~HIIts~iEH~aVl~~~~~Le~-----~g~~Vtyl~--V~-~~G~v~~e~L~~al~~-~T~LVSim~aN 151 (386)
T COG1104 81 AALAYRNAQKGKHIITSAIEHPAVLNTCRYLER-----QGFEVTYLP--VD-SNGLVDLEQLEEALRP-DTILVSIMHAN 151 (386)
T ss_pred hHHhhhcccCCCeEEEcccccHHHHHHHHHHHh-----cCCeEEEeC--CC-CCCeEcHHHHHHhcCC-CceEEEEEecc
Confidence 22 2578999999999999887765422 355565665 55 5799999999999998 88888887 56
Q ss_pred C-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEeCCCCcCCCCCc-eEEEEeCCcc--hhccC
Q 018231 205 A-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVK--EINKQ 280 (359)
Q Consensus 205 n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~--~~~~~ 280 (359)
| +|++.|+++|.++|+++++++++|++|++|.+++++...+ +|++++|+|| |+||.| |++++++..+ +.+.|
T Consensus 152 nE~G~IQpI~ei~~i~k~~~i~fHvDAvQa~Gkipi~~~~~~---vD~ls~SaHK-~~GpkGiGaLyv~~~~~~~p~i~G 227 (386)
T COG1104 152 NETGTIQPIAEIGEICKERGILFHVDAVQAVGKIPIDLEELG---VDLLSFSAHK-FGGPKGIGALYVRPGVRLEPLIHG 227 (386)
T ss_pred cCeeecccHHHHHHHHHHcCCeEEEehhhhcCceeccccccC---cceEEeehhh-ccCCCceEEEEECCCCccCceecc
Confidence 6 9999999999999999999999999999999999998888 9999999999 899999 9999988654 34556
Q ss_pred CcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhccccchhHhhhccccc
Q 018231 281 GKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVY 336 (359)
Q Consensus 281 g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~~l~~~ 336 (359)
|++ + ...+.||.|+++++++.+|+++..++......+...|+..
T Consensus 228 GgQ---E---------~g~RsGTenv~~Ivg~~~A~~~a~~~~~~~~~~~~~lr~~ 271 (386)
T COG1104 228 GGQ---E---------RGLRSGTENVPGIVGFGKAAEIAVEELEEENARLRKLRDR 271 (386)
T ss_pred CcC---C---------CCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554 1 2235699999999999999999888755555555444443
No 13
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=99.96 E-value=3.1e-28 Score=225.81 Aligned_cols=244 Identities=20% Similarity=0.253 Sum_probs=194.0
Q ss_pred cCceeeC-CCCCCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-H
Q 018231 47 KGLELIP-SENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-S 124 (359)
Q Consensus 47 ~~i~l~~-~~~~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a 124 (359)
+.+.|+. ...+.++.|.++|..++...+ ++|.... .+.+..+.+| ++|+.+|+++|+++.+ |+||+|+| +
T Consensus 43 ~~vyld~~at~p~~~~Vldam~~~~~~~~--~nPh~~~-y~w~~~~~~E-~aR~~VAklInAd~~d----IiFts~ATEs 114 (428)
T KOG1549|consen 43 RPVYLDNQATGPMDPRVLDAMLPYLLEYL--GNPHSRS-YGWKAEDAVE-AAREQVAKLINADPSD----IVFTSGATES 114 (428)
T ss_pred ccEEEecCcCCCCCHHHHHHHHHHHHHhh--cCCCccc-cchhhhHHHH-HHHHHHHHHhCCCCCc----EEEeCCchHH
Confidence 4566753 555789999999999998866 6776652 2334444455 4899999999999864 99999999 7
Q ss_pred HHHHHHhh-cCCCC----eeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEE
Q 018231 125 NFQVYTAL-LKPHD----RIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLI 199 (359)
Q Consensus 125 ~~~~~~al-~~~Gd----~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v 199 (359)
+.+++.++ +..+| +|++...+|+++...+..+... |..++.+| ++ +++.+|.+.+++.+++ +|+++
T Consensus 115 ~Nlvl~~v~~~~~~~~~k~iitl~~eH~~v~~s~~~l~~~-----g~~Vt~lp--v~-~~~~~d~~~~~~~i~~-~T~lv 185 (428)
T KOG1549|consen 115 NNLVLKGVARFFGDKTKKHIITLQTEHPCVLDSCRALQEE-----GLEVTYLP--VE-DSGLVDISKLREAIRS-KTRLV 185 (428)
T ss_pred HHHHHHHhhccccccccceEEEecccCcchhHHHHHHHhc-----CeEEEEec--cC-ccccccHHHHHHhcCC-CceEE
Confidence 66688887 66777 9999999999998766655544 44455555 55 6689999999999999 99999
Q ss_pred EEc-CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEeCCCCcCCCCCc-eEEEEeCCc-c
Q 018231 200 VAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGV-K 275 (359)
Q Consensus 200 ~l~-~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~-~ 275 (359)
.+. .+| .|...|+++|.++|++.|+.+++|+||++|.++.|+...+ +|++++|+|||+ ||+| |++|++... +
T Consensus 186 ~I~~Vnn~~gv~~Pv~EI~~icr~~~v~v~~DaAQavG~i~vDV~eln---~D~~s~s~HK~y-gp~~iGaLYvr~~~~~ 261 (428)
T KOG1549|consen 186 SIMHVNNEIGVLQPVKEIVKICREEGVQVHVDAAQAVGKIPVDVQELN---ADFLSISAHKIY-GPPGIGALYVRRKRPR 261 (428)
T ss_pred EEEecccCccccccHHHHHHHhCcCCcEEEeehhhhcCCccccHHHcC---chheeeeccccc-CCCcceEEEEccCCCc
Confidence 987 555 8999999999999999999999999999999999999998 999999999976 6776 999999732 1
Q ss_pred ----hhccCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhccc
Q 018231 276 ----EINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLI 323 (359)
Q Consensus 276 ----~~~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~~~ 323 (359)
+.+.||++. + ..+.||.+.+...++..|.++...+.
T Consensus 262 ~~~~p~~~GGgq~----r--------~~rsGT~~~~~~~~~gsA~e~~~~~~ 301 (428)
T KOG1549|consen 262 LRVEPPLSGGGQE----R--------GLRSGTVATPLAVGLGSAAEFVNKEM 301 (428)
T ss_pred ccccCcccCCccc----c--------ccccCCcCchhhhhhHHHHHHHHhhc
Confidence 223445441 1 12458999999999999998887653
No 14
>PLN02651 cysteine desulfurase
Probab=99.96 E-value=9.7e-28 Score=228.56 Aligned_cols=265 Identities=16% Similarity=0.225 Sum_probs=189.7
Q ss_pred CCCCCCcHHHHHHHHhhhhccCCCCCCCC-cccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHH
Q 018231 53 PSENFTSVSVMQAVGSVMTNKYSEGYPGA-RYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYT 130 (359)
Q Consensus 53 ~~~~~~~~~v~~al~~~~~~~~~~g~~~~-~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~ 130 (359)
++..++|+.|++++.+.+.+.+ +++.. .+..+.. ..++.+.+++.+++++|++++ +|++|+|++ ++..++.
T Consensus 6 a~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~r~~la~~~g~~~~----~v~~t~~~t~a~~~~l~ 78 (364)
T PLN02651 6 QATTPIDPRVLDAMLPFLIEHF--GNPHSRTHLYGWE-SEDAVEKARAQVAALIGADPK----EIIFTSGATESNNLAIK 78 (364)
T ss_pred cCCCCCCHHHHHHHHHHHHhCC--CCCChhhhHHHHH-HHHHHHHHHHHHHHHhCCCCC----eEEEeCCHHHHHHHHHH
Confidence 4666889999999999886544 33332 1111112 233344588999999999875 499999988 6554554
Q ss_pred hh----cCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc-CCC
Q 018231 131 AL----LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA 205 (359)
Q Consensus 131 al----~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n 205 (359)
++ .++||+|++...+|+++..++... ...|.+++.++ .+ +++.+|++++++.+++ ++++++++ ++|
T Consensus 79 ~~~~~~~~~g~~vl~~~~~h~s~~~~~~~~-----~~~g~~v~~v~--~~-~~~~~d~~~l~~~i~~-~t~lv~v~~~~n 149 (364)
T PLN02651 79 GVMHFYKDKKKHVITTQTEHKCVLDSCRHL-----QQEGFEVTYLP--VK-SDGLVDLDELAAAIRP-DTALVSVMAVNN 149 (364)
T ss_pred HHHHhccCCCCEEEEcccccHHHHHHHHHH-----HhcCCEEEEEc--cC-CCCcCCHHHHHHhcCC-CcEEEEEECCCC
Confidence 43 578999999998888765544321 23355565565 44 5578999999999987 89999887 666
Q ss_pred -CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEeCCCCcCCCCCc-eEEEEeCCcch----hcc
Q 018231 206 -YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKE----INK 279 (359)
Q Consensus 206 -~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~----~~~ 279 (359)
+|.+.|+++|.++|+++|+++++|++|++|.+++++..++ +|++++|+||| +||.| |+++++++... ...
T Consensus 150 ~tG~~~~l~~I~~~~~~~g~~~~vD~a~~~g~~~~~~~~~~---~D~~~~s~hK~-~gp~G~g~l~v~~~~~~~l~p~~~ 225 (364)
T PLN02651 150 EIGVIQPVEEIGELCREKKVLFHTDAAQAVGKIPVDVDDLG---VDLMSISGHKI-YGPKGVGALYVRRRPRVRLEPLMS 225 (364)
T ss_pred CceecccHHHHHHHHHHcCCEEEEEcchhhCCcccCcccCC---CCEEEechhhh-CCCCceEEEEEcCCCCCCCCcccc
Confidence 8999999999999999999999999999999999988777 99999999997 79998 99999986421 122
Q ss_pred CCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhccccchhHhhhccccchhhhhc----ccCCCcccc
Q 018231 280 QGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSN----QNNSENIEE 351 (359)
Q Consensus 280 ~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~ 351 (359)
+|+. + .....||+|+..++++.+|++++.+.. ++++.+.......+... ..+++.++.
T Consensus 226 g~~~---~---------~~~~~GT~~~~~~~~l~~al~~~~~~~--~~i~~~~~~l~~~l~~~l~~~~~~~~i~~~ 287 (364)
T PLN02651 226 GGGQ---E---------RGRRSGTENTPLVVGLGAACELAMKEM--DYDEKHMKALRERLLNGLRAKLGGVRVNGP 287 (364)
T ss_pred CCCc---c---------CCccCCCccHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHhhCCCEEEECC
Confidence 2211 0 112358999999999999999998642 44444433333333222 235667763
No 15
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=99.96 E-value=8.8e-28 Score=229.45 Aligned_cols=280 Identities=19% Similarity=0.203 Sum_probs=196.8
Q ss_pred eCCCCCCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHH
Q 018231 52 IPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYT 130 (359)
Q Consensus 52 ~~~~~~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~ 130 (359)
.++..++|+.|++++.+.+...+ +++....+.......++-+.+++.+++++|+++++ +|++++|++ ++..++.
T Consensus 5 ~~~~~~~p~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~r~~la~~lg~~~~~---~v~~~~~~t~a~~~~~~ 79 (371)
T PF00266_consen 5 NAGTGPMPKSVLEAISDYLRNFY--ANPHSGVSHRSREFAEILEEAREALAKLLGAPPDE---EVVFTSNGTEALNAVAS 79 (371)
T ss_dssp TSSS-B-BHHHHHHHHHHHHHSG--SSTSTSSSTTSHHHHHHHHHHHHHHHHHHTSSTTE---EEEEESSHHHHHHHHHH
T ss_pred CCCccCCCHHHHHHHHHHHHHhh--hcCcccccchhhhhhHHHHHHHHHHHHhcCCcccc---ccccccccchhhhhhhh
Confidence 36777899999999999887654 33311111111223444445899999999998732 599999999 8887888
Q ss_pred hh---cCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-
Q 018231 131 AL---LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA- 205 (359)
Q Consensus 131 al---~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n- 205 (359)
++ +++||+|++.+.+|++...++.... ...|.+++.++. + .++.+|++++++.+++ ++++++++ .++
T Consensus 80 ~l~~~~~~g~~vl~~~~~~~s~~~~~~~~~----~~~g~~v~~i~~--~-~~~~~~~~~~~~~l~~-~~~lv~~~~~~~~ 151 (371)
T PF00266_consen 80 SLLNPLKPGDEVLVTSNEHPSNRYPWEEIA----KRKGAEVRVIPA--D-PGGSLDLEDLEEALNP-DTRLVSISHVENS 151 (371)
T ss_dssp HHHHHGTTTCEEEEEESSHHHHHHHHHHHH----HHTTEEEEEEEE--G-TTSSCSHHHHHHHHHT-TESEEEEESBETT
T ss_pred cccccccccccccccccccccccccccccc----ccchhhhccccc--c-ccchhhhhhhhhhhcc-ccceEEeeccccc
Confidence 88 7999999999999988865554322 234666766753 3 4578899999999987 99999987 444
Q ss_pred CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEeCCCCcCCCCCc-eEEEEeCCcchh----ccC
Q 018231 206 YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEI----NKQ 280 (359)
Q Consensus 206 ~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~----~~~ 280 (359)
+|...|+++|.++|+++|+++++|++|++|.+++++...+ +|++++|+|| |+||+| |++++++++... ..+
T Consensus 152 tG~~~pi~~I~~~~~~~~~~~~vD~~~~~g~~~id~~~~~---~D~~~~s~~K-l~gp~G~g~l~v~~~~~~~~~p~~~~ 227 (371)
T PF00266_consen 152 TGVRNPIEEIAKLAHEYGALLVVDAAQSAGCVPIDLDELG---ADFLVFSSHK-LGGPPGLGFLYVRPEAIERLRPAKPG 227 (371)
T ss_dssp TTBBSSHHHHHHHHHHTTSEEEEE-TTTTTTSS--TTTTT---ESEEEEESTS-TTSSSTEEEEEEEHHHHHHHHTSSSS
T ss_pred ccEEeeeceehhhhhccCCceeEechhccccccccccccc---cceeeecccc-cCCCCchhhheehhhhhhcccccccc
Confidence 8999999999999999999999999999999999998887 9999999999 999999 999999965222 223
Q ss_pred Ccc-hhhhHHHhhccccCCCC--CCCCcHHHHHHHHHHHHHHhccccchhHhhhccccchhh---hhcccCCCccc
Q 018231 281 GKE-VFYDYEEKINQAVFPGL--QGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAF---VSNQNNSENIE 350 (359)
Q Consensus 281 g~~-~~~~~~~~~~~~~~~~~--~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~ 350 (359)
+.. .+... ........+.+ .||+++..++++..|++++. +.++++++.+.......+ +.++...+.++
T Consensus 228 ~~~~~~~~~-~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~-~~g~~~i~~~~~~l~~~~~~~l~~~~~~~~~~ 301 (371)
T PF00266_consen 228 GGYLDFPSL-QEYGLADDARRFEGGTPNVPAIYALNEALKLLE-EIGIERIRERIRELAEYLREALEELPGIEVLG 301 (371)
T ss_dssp SSTTTHHHH-HHHCHHSTTTGSSSSS--HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTTTEEESS
T ss_pred ccccccccc-hhcccccccccccccceeeehhhhHHHHHhhhh-ccccccchhhhhhHHHHHHhhhhcCCceeEee
Confidence 321 11122 22211123333 38999999999999999994 456666665544444333 44444545444
No 16
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=99.95 E-value=8.5e-27 Score=224.95 Aligned_cols=264 Identities=18% Similarity=0.233 Sum_probs=187.3
Q ss_pred Cceee-CCCCCCcHHHHHHHHhhhhccCCCCCCCC-cccCCchhHHHHHHHHHHHHHHHcCC-CCCCCceeEEECCChH-
Q 018231 48 GLELI-PSENFTSVSVMQAVGSVMTNKYSEGYPGA-RYYGGNEYIDMAESLCQKRALEAFRL-DPEKWGVNVQSLSGSP- 123 (359)
Q Consensus 48 ~i~l~-~~~~~~~~~v~~al~~~~~~~~~~g~~~~-~~~~~~~~~~~l~~~~~~~~a~~~g~-~~~~~~~~v~~tsG~~- 123 (359)
.+-|+ ++..++|+.|.+++.+++.+.+ +++.. .+..+.. ..+.-+.+|+.+++++|+ +++ +|++|+|++
T Consensus 20 ~~yld~a~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~r~~la~~~g~~~~~----~i~~~~~~t~ 92 (401)
T PRK10874 20 GVYLDSAATALKPQAVIEATQQFYSLSA--GNVHRSQFAAAQR-LTARYEAAREQVAQLLNAPDAK----NIVWTRGTTE 92 (401)
T ss_pred eEEEeCCcccCCCHHHHHHHHHHHHhcc--CCCCCcccHHHHH-HHHHHHHHHHHHHHHcCCCCCC----EEEEECCHHH
Confidence 46776 4556789999999999887643 33322 1111112 233334588999999999 554 599999999
Q ss_pred HHHHHHHhh----cCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEE
Q 018231 124 SNFQVYTAL----LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLI 199 (359)
Q Consensus 124 a~~~~~~al----~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v 199 (359)
++..++.++ +++||+|++++++|++.+.++.. .+...|++++.++ .+ .++.+|++++++.+++ +|+++
T Consensus 93 ~i~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~----~~~~~g~~v~~v~--~~-~~~~~d~~~l~~~i~~-~t~lv 164 (401)
T PRK10874 93 SINLVAQSYARPRLQPGDEIIVSEAEHHANLVPWLM----VAQQTGAKVVKLP--LG-ADRLPDVDLLPELITP-RTRIL 164 (401)
T ss_pred HHHHHHHHhhhccCCCcCEEEECCcchHHHHHHHHH----HHHHhCCEEEEEe--cC-CCCcCCHHHHHHhcCc-CcEEE
Confidence 777677776 48999999999998876544432 2234566676665 34 4578899999999987 89999
Q ss_pred EEc-CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEeCCCCcCCCCCc-eEEEEeCCcch
Q 018231 200 VAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKE 276 (359)
Q Consensus 200 ~l~-~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~ 276 (359)
+++ ++| ||.+.|+++|.++|+++|+++++|++|+.|..+.++...+ +|++++|+|| +.||.| |+++++++...
T Consensus 165 ~i~~~~n~tG~~~~~~~i~~l~~~~g~~~ivD~a~~~g~~~~~~~~~~---~d~~~~s~~K-~~gp~G~G~l~~~~~~~~ 240 (401)
T PRK10874 165 ALGQMSNVTGGCPDLARAITLAHQAGMVVMVDGAQGAVHFPADVQALD---IDFYAFSGHK-LYGPTGIGVLYGKSELLE 240 (401)
T ss_pred EEeCCcccccCcCCHHHHHHHHHHcCCEEEEECCcccccccCCchhcC---CCEEEEeccc-ccCCCccEEEEEchHHHh
Confidence 988 777 9999999999999999999999999999998887766555 9999999999 558888 99999886422
Q ss_pred h---ccCCcchh-hhHHHhhccccCCCC--CCCCcHHHHHHHHHHHHHHhccccchhHhhh
Q 018231 277 I---NKQGKEVF-YDYEEKINQAVFPGL--QGGPHNHTITGLAVALKQVCTLITFSHIHVF 331 (359)
Q Consensus 277 ~---~~~g~~~~-~~~~~~~~~~~~~~~--~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~ 331 (359)
. ..+|+..+ ......+.....+.+ .||+|+..++|+.+|++++.+. ++.+++++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l~~~-g~~~~~~~ 300 (401)
T PRK10874 241 AMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLADI-DINQAESW 300 (401)
T ss_pred cCCCeecCCcceEeeccCccCCCCChhhccCCCcCHHHHHHHHHHHHHHHHh-CHHHHHHH
Confidence 1 22332211 000011111112233 3999999999999999988654 44444444
No 17
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=99.95 E-value=1.8e-26 Score=223.08 Aligned_cols=266 Identities=18% Similarity=0.189 Sum_probs=188.7
Q ss_pred Cceee-CCCCCCcHHHHHHHHhhhhccCCCCCCCC-cccCCchhHHHHHHHHHHHHHHHcCC-CCCCCceeEEECCChH-
Q 018231 48 GLELI-PSENFTSVSVMQAVGSVMTNKYSEGYPGA-RYYGGNEYIDMAESLCQKRALEAFRL-DPEKWGVNVQSLSGSP- 123 (359)
Q Consensus 48 ~i~l~-~~~~~~~~~v~~al~~~~~~~~~~g~~~~-~~~~~~~~~~~l~~~~~~~~a~~~g~-~~~~~~~~v~~tsG~~- 123 (359)
.+-|+ ++..++|+.|++++.+++...+ +++.. .+..+....+.+ +.+|+.+++++|+ +++ +|++|+|++
T Consensus 24 ~iYld~a~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~r~~la~~~~~~~~~----~v~~t~g~t~ 96 (406)
T PRK09295 24 LAYLDSAASAQKPSQVIDAEAEFYRHGY--AAVHRGIHTLSAQATEKM-ENVRKQAALFINARSAE----ELVFVRGTTE 96 (406)
T ss_pred eEEEeCcccccCCHHHHHHHHHHHHhcC--CCCCCcccHHHHHHHHHH-HHHHHHHHHHcCcCCCC----eEEEeCCHHH
Confidence 36675 4666889999999999887533 22211 111121223333 3488999999998 444 499999999
Q ss_pred HHHHHHHh----hcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEE
Q 018231 124 SNFQVYTA----LLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLI 199 (359)
Q Consensus 124 a~~~~~~a----l~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v 199 (359)
++..++.+ ++++||+|++++.+|++.+.++... +...|.+++.++ .+ +++.+|+++|++.+++ +|++|
T Consensus 97 ~l~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~----~~~~g~~v~~v~--~~-~~~~~d~~~l~~~i~~-~t~lv 168 (406)
T PRK09295 97 GINLVANSWGNSNVRAGDNIIISEMEHHANIVPWQML----CARVGAELRVIP--LN-PDGTLQLETLPALFDE-RTRLL 168 (406)
T ss_pred HHHHHHHHhhhhcCCCcCEEEECcchhhHHHHHHHHH----HHHcCcEEEEEe--cC-CCCCCCHHHHHHhcCC-CcEEE
Confidence 76656665 4689999999999998775554422 233466666665 44 4577899999999987 89999
Q ss_pred EEc-CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEeCCCCcCCCCCc-eEEEEeCCcch
Q 018231 200 VAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKE 276 (359)
Q Consensus 200 ~l~-~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~ 276 (359)
+++ ++| +|.+.|+++|.++|+++|+++++|++|+.|..+.++...+ +|++++|+|| +.||.| |++++++++..
T Consensus 169 ~l~~~~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~~~~~~~~~---~D~~~~s~~K-~~gp~G~G~l~~~~~~~~ 244 (406)
T PRK09295 169 AITHVSNVLGTENPLAEMIALAHQHGAKVLVDGAQAVMHHPVDVQALD---CDFYVFSGHK-LYGPTGIGILYVKEALLQ 244 (406)
T ss_pred EEecchhcccccCCHHHHHHHHHHcCCEEEEEcccccCccccCchhcC---CCEEEeehhh-ccCCCCcEEEEEchHhHh
Confidence 998 777 9999999999999999999999999999999888876666 9999999999 668988 99999886522
Q ss_pred h---ccCCcch--hhhHHHhhccccCCCC--CCCCcHHHHHHHHHHHHHHhccccchhHhhhcc
Q 018231 277 I---NKQGKEV--FYDYEEKINQAVFPGL--QGGPHNHTITGLAVALKQVCTLITFSHIHVFSL 333 (359)
Q Consensus 277 ~---~~~g~~~--~~~~~~~~~~~~~~~~--~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~~l 333 (359)
. ..+|++. .............+.+ .||+++..++++.+|++++.+. ++++++.+..
T Consensus 245 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~-g~~~i~~~~~ 307 (406)
T PRK09295 245 EMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVSAL-GLNNIAEYEQ 307 (406)
T ss_pred hCCCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHHHHHHh-CHHHHHHHHH
Confidence 1 2333321 0011011111111222 3999999999999999998763 4555555433
No 18
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=99.95 E-value=1.7e-26 Score=222.62 Aligned_cols=264 Identities=18% Similarity=0.216 Sum_probs=185.7
Q ss_pred Cceee-CCCCCCcHHHHHHHHhhhhccCCCCCCCC-cccCCchhHHHHHHHHHHHHHHHcCCC-CCCCceeEEECCChH-
Q 018231 48 GLELI-PSENFTSVSVMQAVGSVMTNKYSEGYPGA-RYYGGNEYIDMAESLCQKRALEAFRLD-PEKWGVNVQSLSGSP- 123 (359)
Q Consensus 48 ~i~l~-~~~~~~~~~v~~al~~~~~~~~~~g~~~~-~~~~~~~~~~~l~~~~~~~~a~~~g~~-~~~~~~~v~~tsG~~- 123 (359)
.+-|+ ++..++|+.|++++.+++...+ +++.. .+..+.. ..+.-+.+|+.+++++|++ ++ +|++|+|++
T Consensus 17 ~iyld~a~~~~~p~~v~~a~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~r~~la~~~g~~~~~----~i~~t~g~t~ 89 (398)
T TIGR03392 17 TVYLDSAATALKPQAVIDATQQFYRLSS--GTVHRSQHQQAQS-LTARYELARQQVARFLNAPDAE----NIVWTRGTTE 89 (398)
T ss_pred eEEeeCccccCCCHHHHHHHHHHHHhcC--CCCCCcccHHHHH-HHHHHHHHHHHHHHHhCCCCCC----eEEEeCChHH
Confidence 46675 4556889999999999876533 33321 1111112 2233345889999999995 44 599999999
Q ss_pred HHHHHHHhh----cCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEE
Q 018231 124 SNFQVYTAL----LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLI 199 (359)
Q Consensus 124 a~~~~~~al----~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v 199 (359)
++..++.++ +++||+|++++++|++.+.++.. .+...|.+++.++ .+ .++.+|++++++.+++ +|+++
T Consensus 90 ~l~~~~~~~~~~~~~~gd~Vl~~~~~~~s~~~~~~~----~~~~~g~~v~~v~--~~-~~~~~~~~~l~~~i~~-~t~lv 161 (398)
T TIGR03392 90 SINLVAQSYARPRLQPGDEIIVSEAEHHANLIPWLM----VAQQTGAKVVKLP--IG-ADLLPDIRQLPELLTP-RTRIL 161 (398)
T ss_pred HHHHHHHHhhhccCCCCCEEEECCcchhHHHHHHHH----HHHHcCcEEEEEe--cC-CCCCcCHHHHHHHhcc-CceEE
Confidence 777677776 58999999999888875443331 2234566666665 44 4467899999999987 89999
Q ss_pred EEc-CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEeCCCCcCCCCCc-eEEEEeCCcch
Q 018231 200 VAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKE 276 (359)
Q Consensus 200 ~l~-~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~ 276 (359)
+++ ++| +|...|+++|.++|+++|+++++|++|+.|..+.++...+ +|++++|+|| +.||.| |+++++++...
T Consensus 162 ~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~---~d~~~~s~~K-~~gp~G~G~l~~~~~~~~ 237 (398)
T TIGR03392 162 ALGQMSNVTGGCPDLARAITLAHQYGAVVVVDGAQGVVHGPPDVQALD---IDFYAFSGHK-LYGPTGIGVLYGKTELLE 237 (398)
T ss_pred EEECccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCCCCChhhcC---CCEEEEeccc-ccCCCceEEEEEcHHHHh
Confidence 888 777 9999999999999999999999999999988887765555 8999999999 557888 99998876421
Q ss_pred h---ccCCcchh--hhHHHhhccccCCCC--CCCCcHHHHHHHHHHHHHHhccccchhHhhhc
Q 018231 277 I---NKQGKEVF--YDYEEKINQAVFPGL--QGGPHNHTITGLAVALKQVCTLITFSHIHVFS 332 (359)
Q Consensus 277 ~---~~~g~~~~--~~~~~~~~~~~~~~~--~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~~ 332 (359)
. ..+|+... .+. ..+.....+.+ .||+++..++++.+|++++.+. ++.+++.+.
T Consensus 238 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l~~~-g~~~i~~~~ 298 (398)
T TIGR03392 238 AMPPWQGGGKMLSHVSF-DGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDI-DIAAAEAWS 298 (398)
T ss_pred hCCCeecCCceEeeccc-cccccCCChhhccCCCCCHHHHHHHHHHHHHHHHh-CHHHHHHHH
Confidence 1 22332210 010 01111112223 3999999999999999988653 444544443
No 19
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=99.94 E-value=7.9e-26 Score=216.25 Aligned_cols=256 Identities=18% Similarity=0.258 Sum_probs=180.2
Q ss_pred CCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHhhcCC
Q 018231 57 FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKP 135 (359)
Q Consensus 57 ~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~al~~~ 135 (359)
++|+.+++++.+.+.... +.++...|..........+.+++.+++++|++..+ +|++|+|++ ++..++.+++++
T Consensus 11 ~~p~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~---~v~~~~g~t~al~~~~~~~~~~ 85 (376)
T TIGR01977 11 PKPDEVYEAMADFYKNYG--GSPGRGRYRLALRASREVEETRQLLAKLFNAPSSA---HVVFTNNATTALNIALKGLLKE 85 (376)
T ss_pred CCCHHHHHHHHHHHHhcC--CCCCcccchHHHHHHHHHHHHHHHHHHHhCcCCCC---eEEEeCCHHHHHHHHHHhccCC
Confidence 577899999988876521 11111111111111233334779999999986542 599998888 777788888999
Q ss_pred CCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhhHH
Q 018231 136 HDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYE 213 (359)
Q Consensus 136 Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~l~ 213 (359)
||+|++.+++|+++..++.. .+...|.+++.++ .+ +++.+|++++++.+++ ++++++++ ++| +|.+.|++
T Consensus 86 gd~vl~~~~~~~~~~~~~~~----~~~~~g~~~~~v~--~~-~~~~~d~~~l~~~~~~-~~~~v~~~~~~n~tG~~~~~~ 157 (376)
T TIGR01977 86 GDHVITTPMEHNSVARPLEC----LKEQIGVEITIVK--CD-NEGLISPERIKRAIKT-NTKLIVVSHASNVTGTILPIE 157 (376)
T ss_pred CCEEEECcchhhHHHHHHHH----HHHHcCcEEEEEe--cC-CCCCcCHHHHHHhcCC-CCeEEEEECCCCCccccCCHH
Confidence 99999999888776543321 1223365565554 44 4578899999999987 89999887 777 89999999
Q ss_pred HHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEeCCCCcCCCCCc-eEEEEeCCcc--hhccCCcchhhhHHH
Q 018231 214 RIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVK--EINKQGKEVFYDYEE 290 (359)
Q Consensus 214 ~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~--~~~~~g~~~~~~~~~ 290 (359)
+|.++|+++|+++|+|++|++|..+.++...+ +|++++|+|||++||.| |+++++++.. +...++........+
T Consensus 158 ~i~~l~~~~~~~livD~a~~~g~~~~~~~~~~---~D~~~~s~~K~l~~p~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 234 (376)
T TIGR01977 158 EIGELAQENGIFFILDAAQTAGVIPIDMTELA---IDMLAFTGHKGLLGPQGTGGLYIREGIKLKPLKSGGTGSHSALID 234 (376)
T ss_pred HHHHHHHHcCCEEEEEhhhccCccCCCchhcC---CCEEEecccccccCCCCceEEEEcCCcCcCceecCCCcccccccc
Confidence 99999999999999999999999988876666 99999999999999998 8888887642 222222221101111
Q ss_pred hhccccCCCC--CCCCcHHHHHHHHHHHHHHhccccchhHhhh
Q 018231 291 KINQAVFPGL--QGGPHNHTITGLAVALKQVCTLITFSHIHVF 331 (359)
Q Consensus 291 ~~~~~~~~~~--~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~ 331 (359)
. ....+.+ .||++.+.++++.++++++.+. +..+++.+
T Consensus 235 ~--~~~~~~r~~~~t~~~~~~~a~~~al~~~~~~-g~~~~~~~ 274 (376)
T TIGR01977 235 Q--PSELPDRFESGTLNTPGIAGLNAGIKFIEKI-GIANIAKK 274 (376)
T ss_pred c--cccchhhccCCCCCHHHHHHHHHHHHHHHHh-CHHHHHHH
Confidence 1 0111112 3899999999999999998865 44444443
No 20
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=99.94 E-value=1.2e-25 Score=218.44 Aligned_cols=285 Identities=16% Similarity=0.157 Sum_probs=194.3
Q ss_pred Cceee-CCCCCCcHHHHHHHHhhhhccCCCCCCCC-cccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-H
Q 018231 48 GLELI-PSENFTSVSVMQAVGSVMTNKYSEGYPGA-RYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-S 124 (359)
Q Consensus 48 ~i~l~-~~~~~~~~~v~~al~~~~~~~~~~g~~~~-~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a 124 (359)
.+-|+ ++..++|+.|++++.+++...+ +++.. .++.+....+.+ +.+|+.+++++|+++++ +|++|+|++ +
T Consensus 33 ~iyLd~a~~~~~p~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~r~~la~~~~~~~~~---~v~~t~g~t~a 106 (424)
T PLN02855 33 LVYLDNAATSQKPAAVLDALQDYYEEYN--SNVHRGIHALSAKATDAY-ELARKKVAAFINASTSR---EIVFTRNATEA 106 (424)
T ss_pred eEEeeCccccCCCHHHHHHHHHHHHhcC--CCCCCccchHHHHHHHHH-HHHHHHHHHHcCCCCCC---EEEEeCCHHHH
Confidence 36665 4555788999999999876533 22211 112222223333 34789999999995422 599999999 7
Q ss_pred HHHHHHh----hcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEE
Q 018231 125 NFQVYTA----LLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIV 200 (359)
Q Consensus 125 ~~~~~~a----l~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~ 200 (359)
+..++.+ .+++||+|++++++|++.+.++.. .+...|.+++.++ .+ .++.+|++++++.+++ +|++|+
T Consensus 107 l~~i~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~----~a~~~g~~v~~v~--~~-~~~~~~~~~l~~~i~~-~t~lv~ 178 (424)
T PLN02855 107 INLVAYTWGLANLKPGDEVILSVAEHHSNIVPWQL----VAQKTGAVLKFVG--LT-PDEVLDVEQLKELLSE-KTKLVA 178 (424)
T ss_pred HHHHHHHhhhhcCCCcCEEEECCCccHHHHHHHHH----HHHHcCCEEEEEe--cC-CCCCcCHHHHHHHhcc-CceEEE
Confidence 6656665 368999999999999876544432 1233466666665 34 3356899999999987 899999
Q ss_pred Ec-CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEeCCCCcCCCCCc-eEEEEeCCcchh
Q 018231 201 AG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEI 277 (359)
Q Consensus 201 l~-~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~ 277 (359)
++ ++| +|.+.|+++|.++|+++|+++++|++|+.|..++++...+ +|++++|+|| +.||.| |+++++++....
T Consensus 179 i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~a~~~g~~~~~~~~~~---~d~~~~s~~K-~~gp~G~G~l~~~~~~~~~ 254 (424)
T PLN02855 179 THHVSNVLGSILPVEDIVHWAHAVGAKVLVDACQSVPHMPVDVQTLG---ADFLVASSHK-MCGPTGIGFLWGKSDLLES 254 (424)
T ss_pred EeCccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCcCCCchhcC---CCEEEeeccc-ccCCCccEEEEEchhhhhc
Confidence 88 777 9999999999999999999999999999998888776666 8999999999 668988 999998865211
Q ss_pred ---ccCCcch-hhhHHHhhccccCCCC--CCCCcHHHHHHHHHHHHHHhccccchhHhhhccccchhhh---hcccCCCc
Q 018231 278 ---NKQGKEV-FYDYEEKINQAVFPGL--QGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFV---SNQNNSEN 348 (359)
Q Consensus 278 ---~~~g~~~-~~~~~~~~~~~~~~~~--~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~ 348 (359)
+.+|+.. .............+.+ .||+++..++++.+|++++.+ .++++++.+.......+. +...+++.
T Consensus 255 ~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~-~g~~~i~~~~~~l~~~l~~~L~~~~g~~i 333 (424)
T PLN02855 255 MPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLSE-IGMDRIHEYEVELGTYLYEKLSSVPGVRI 333 (424)
T ss_pred CCCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 2233221 1000000000011222 499999999999999998875 366666665444443333 23335556
Q ss_pred ccc
Q 018231 349 IEE 351 (359)
Q Consensus 349 ~~~ 351 (359)
++.
T Consensus 334 ~~~ 336 (424)
T PLN02855 334 YGP 336 (424)
T ss_pred eCC
Confidence 653
No 21
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=99.94 E-value=7.7e-26 Score=216.65 Aligned_cols=238 Identities=19% Similarity=0.295 Sum_probs=177.6
Q ss_pred CCCCCCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHh
Q 018231 53 PSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTA 131 (359)
Q Consensus 53 ~~~~~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~a 131 (359)
++..++|+.|++++.+++.+.+ +++...+..+....+ ..+.+++++++++|++++ +|++|+|++ ++..++.+
T Consensus 6 aa~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~r~~la~~~g~~~~----~i~~t~~~t~a~~~al~~ 78 (379)
T TIGR03402 6 NATTRVDPEVLEAMLPYFTEYF--GNPSSMHSFGGEVGK-AVEEAREQVAKLLGAEPD----EIIFTSGGTESDNTAIKS 78 (379)
T ss_pred cCCCCCCHHHHHHHHHHHHhcC--CCCCcccHHHHHHHH-HHHHHHHHHHHHhCCCCC----eEEEeCcHHHHHHHHHHH
Confidence 4566889999999999876533 444431111112223 334588999999999865 499999988 77767766
Q ss_pred hc---CCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-C
Q 018231 132 LL---KPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-Y 206 (359)
Q Consensus 132 l~---~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~ 206 (359)
++ .+||+|++...+|+++..++... ...|.+++.++ .+ +++.+|++++++.+++ ++++++++ ++| +
T Consensus 79 ~~~~~~~~~~vv~~~~~~~s~~~~~~~~-----~~~G~~v~~v~--~~-~~g~~~~~~l~~~i~~-~~~lv~i~~~~n~t 149 (379)
T TIGR03402 79 ALAAQPEKRHIITTAVEHPAVLSLCQHL-----EKQGYKVTYLP--VD-EEGRLDLEELRAAITD-DTALVSVMWANNET 149 (379)
T ss_pred HHHhcCCCCeEEEcccccHHHHHHHHHH-----HHcCCEEEEEc--cC-CCCcCCHHHHHHhcCC-CcEEEEEEcccCCe
Confidence 53 56789999898888776554422 22465666665 44 4578999999999987 89998887 666 8
Q ss_pred CChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEeCCCCcCCCCCc-eEEEEeCCcc--hhccCCcc
Q 018231 207 ARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVK--EINKQGKE 283 (359)
Q Consensus 207 g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~--~~~~~g~~ 283 (359)
|...|+++|.++|+++|+++++|++|++|..+.++...+ +|++++|+|| +.||.| |+++++++.. +...+|+.
T Consensus 150 G~~~~~~~I~~l~~~~g~~vivD~~~~~g~~~~~~~~~~---~D~~~~s~~K-~~gp~G~g~l~v~~~~~~~p~~~g~~~ 225 (379)
T TIGR03402 150 GTIFPIEEIGEIAKERGALFHTDAVQAVGKIPIDLKEMN---IDMLSLSGHK-LHGPKGVGALYIRKGTRFRPLLRGGHQ 225 (379)
T ss_pred eecccHHHHHHHHHHcCCEEEEECcccccccccCcccCC---CCEEEEcHHH-cCCCCceEEEEECCCCCCCCcccCCcc
Confidence 999999999999999999999999999999998887766 9999999999 779999 9999987532 11111111
Q ss_pred hhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhcc
Q 018231 284 VFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTL 322 (359)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~~ 322 (359)
+ .....||++++.+.++.+|++++.+.
T Consensus 226 ---~---------~~~~~gt~~~~~~~~l~~al~~~~~~ 252 (379)
T TIGR03402 226 ---E---------RGRRAGTENVPGIVGLGKAAELATEH 252 (379)
T ss_pred ---C---------CCcCCCCccHHHHHHHHHHHHHHHHh
Confidence 0 01135899999999999999988753
No 22
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=99.94 E-value=1.1e-25 Score=209.55 Aligned_cols=258 Identities=16% Similarity=0.165 Sum_probs=190.7
Q ss_pred CceeeCCCCCCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChHHHHH
Q 018231 48 GLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQ 127 (359)
Q Consensus 48 ~i~l~~~~~~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~ 127 (359)
.+.|.||+.++++.|+++|...+.+++ +.++...++ .+.+.++..|+.+... +-++.+||+.++.+
T Consensus 6 ~~Ll~PGP~~v~~~V~~am~~~~~~h~-----------s~~F~~~~~-~~~~~L~~v~~t~~~~--~~ll~gsGt~amEA 71 (383)
T COG0075 6 RLLLTPGPVPVPPRVLLAMARPMVGHR-----------SPDFVGIMK-EVLEKLRKVFGTENGD--VVLLSGSGTLAMEA 71 (383)
T ss_pred ceeeeCCCCCCCHHHHHHhcCCCCCCC-----------CHHHHHHHH-HHHHHHHHHhcCCCCc--EEEEcCCcHHHHHH
Confidence 478899999999999999998766533 123333333 4778999999987432 22333555559999
Q ss_pred HHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhh-CCcEEEEc--CC
Q 018231 128 VYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF-RPKLIVAG--AS 204 (359)
Q Consensus 128 ~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~-~~k~v~l~--~~ 204 (359)
++.++++|||+||+.. ++.++..+ .+.++..|.+++.+. .+ ++-.+|+++++++++++ +.++|.++ .+
T Consensus 72 av~sl~~pgdkVLv~~---nG~FG~R~---~~ia~~~g~~v~~~~--~~-wg~~v~p~~v~~~L~~~~~~~~V~~vH~ET 142 (383)
T COG0075 72 AVASLVEPGDKVLVVV---NGKFGERF---AEIAERYGAEVVVLE--VE-WGEAVDPEEVEEALDKDPDIKAVAVVHNET 142 (383)
T ss_pred HHHhccCCCCeEEEEe---CChHHHHH---HHHHHHhCCceEEEe--CC-CCCCCCHHHHHHHHhcCCCccEEEEEeccC
Confidence 9999999999999987 33333222 234566777776664 33 55689999999999842 45677665 55
Q ss_pred CCCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEeCCCCcCCCCCc-eEEEEeCCcchhccCC-c
Q 018231 205 AYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEINKQG-K 282 (359)
Q Consensus 205 n~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~~~~g-~ 282 (359)
.||..+|+++|+++|++||+++|+|++.++|..++++..|+ +|+++++++|+|++|+| |++.++++........ .
T Consensus 143 STGvlnpl~~I~~~~k~~g~l~iVDaVsS~Gg~~~~vd~wg---iDv~itgSQK~l~~PPGla~v~~S~~a~e~~~~~~~ 219 (383)
T COG0075 143 STGVLNPLKEIAKAAKEHGALLIVDAVSSLGGEPLKVDEWG---IDVAITGSQKALGAPPGLAFVAVSERALEAIEERKH 219 (383)
T ss_pred cccccCcHHHHHHHHHHcCCEEEEEecccCCCcccchhhcC---ccEEEecCchhccCCCccceeEECHHHHHHHhcCCC
Confidence 58999999999999999999999999999999999999999 99999999999999999 9999988653322221 1
Q ss_pred chh-hhHHHhhccccC-CCCCCCCcHHHHHHHHHHHHHHhccccchhHhhh
Q 018231 283 EVF-YDYEEKINQAVF-PGLQGGPHNHTITGLAVALKQVCTLITFSHIHVF 331 (359)
Q Consensus 283 ~~~-~~~~~~~~~~~~-~~~~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~ 331 (359)
+.+ +++.+......- .....||++..+.|+..||+.+.+|+....++++
T Consensus 220 ~~~ylDL~~~~~~~~~~~~~p~Tppv~~i~aL~~al~~i~~EGle~r~~RH 270 (383)
T COG0075 220 PSFYLDLKKWLKYMEKKGSTPYTPPVNLIYALREALDLILEEGLEARIARH 270 (383)
T ss_pred CceeecHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 123 244443322211 2344899999999999999999998644444444
No 23
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=99.94 E-value=9.8e-26 Score=217.54 Aligned_cols=242 Identities=19% Similarity=0.244 Sum_probs=176.0
Q ss_pred ceee-CCCCCCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-HHH
Q 018231 49 LELI-PSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNF 126 (359)
Q Consensus 49 i~l~-~~~~~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~ 126 (359)
+-|+ ++..++++.|++++.+++...+ +++....+.......+..+.+++.+++++|+++++ |++++|++ ++.
T Consensus 5 ~yld~aa~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~----v~~~~g~t~a~~ 78 (402)
T TIGR02006 5 IYLDYAATTPVDPRVAEKMMPYLTEKF--GNPASRSHSFGWEAEEAVENARNQVAELIGADSRE----IVFTSGATESNN 78 (402)
T ss_pred EEeeCCcCCCCCHHHHHHHHHHHHhcC--CCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCe----EEEeCCHHHHHH
Confidence 4454 4556889999999988876544 33332111000112233345789999999998754 99999999 777
Q ss_pred HHHHhh----cCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc
Q 018231 127 QVYTAL----LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG 202 (359)
Q Consensus 127 ~~~~al----~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~ 202 (359)
.++.++ .++||+|++...+|+++..++... ...|.+++.++ .+ +++.+|++++++.+++ ++++++++
T Consensus 79 ~~l~~l~~~~~~~g~~Vi~~~~~h~s~~~~~~~~-----~~~g~~v~~v~--~~-~~~~~d~~~l~~~l~~-~~~lv~v~ 149 (402)
T TIGR02006 79 LAIKGIAHFYKSKGNHIITSKTEHKAVLDTCRYL-----EREGFEVTYLP--PK-SNGLIDLEELKAAIRD-DTILVSIM 149 (402)
T ss_pred HHHHHHHHhhcCCCCEEEECCCccHHHHHHHHHH-----HhcCCEEEEEc--cC-CCCcCCHHHHHHhcCC-CCEEEEEE
Confidence 666554 378999999998888876554321 22355565665 44 5578999999999987 89998887
Q ss_pred -CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEeCCCCcCCCCCc-eEEEEeCCcch---
Q 018231 203 -ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKE--- 276 (359)
Q Consensus 203 -~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~--- 276 (359)
++| +|...|+++|.++|+++|+++++|++|++|..++++...+ +|++++|+||+ .||.| |+++++++...
T Consensus 150 ~~~n~tG~~~~~~~I~~l~~~~g~~livD~a~a~g~~~~~~~~~~---~D~~~~s~~K~-~gp~G~G~l~~~~~~~~~~~ 225 (402)
T TIGR02006 150 HVNNEIGVIQDIAAIGEICRERKVFFHVDAAQSVGKIPINVNELK---VDLMSISGHKI-YGPKGIGALYVRRKPRVRLE 225 (402)
T ss_pred CCCcCceecccHHHHHHHHHHcCCEEEEEcchhcCCcccCccccC---CCEEEEehhhh-cCCCceEEEEEccCCCCCCC
Confidence 666 8999999999999999999999999999999988877666 99999999995 57888 99999875211
Q ss_pred -hccCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhc
Q 018231 277 -INKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCT 321 (359)
Q Consensus 277 -~~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~ 321 (359)
...+|+. . .....||+++..++++.+|++++.+
T Consensus 226 ~~~~g~~~---~---------~~~~~gt~~~~~~~al~~al~~~~~ 259 (402)
T TIGR02006 226 ALIHGGGH---E---------RGMRSGTLPTHQIVGMGEAFRIAKE 259 (402)
T ss_pred ceecCCCc---c---------CCccCCCccHHHHHHHHHHHHHHHH
Confidence 1111110 0 0112489999999999999998875
No 24
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=99.94 E-value=2.1e-25 Score=211.60 Aligned_cols=238 Identities=21% Similarity=0.233 Sum_probs=174.4
Q ss_pred CCCCCCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHh
Q 018231 53 PSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTA 131 (359)
Q Consensus 53 ~~~~~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~a 131 (359)
++..++++.|++++.+.+...+ ++++...+.......++.+.+++++++++|++++ +|++++|++ ++..++.+
T Consensus 5 a~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~----~v~~~~g~t~a~~~~l~~ 78 (353)
T TIGR03235 5 NATTPIDPAVAEAMLPWLLEEF--GNPSSRTHEFGHNAKKAVERARKQVAEALGADTE----EVIFTSGATESNNLAILG 78 (353)
T ss_pred CCCCCCCHHHHHHHHHHHHhcC--CCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCC----eEEEeCCHHHHHHHHHHH
Confidence 4556789999999999876533 3333211110111223334588999999999875 499999998 77767777
Q ss_pred hc----CCC-CeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc-CCC
Q 018231 132 LL----KPH-DRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA 205 (359)
Q Consensus 132 l~----~~G-d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n 205 (359)
+. ++| |.|++...+|+++..++... ...|.+++.++ .+ +++.+|++++++.+++ ++++++++ ++|
T Consensus 79 l~~~~~~~g~~~vi~~~~~~~s~~~~~~~~-----~~~G~~v~~v~--~~-~~~~~d~~~l~~~l~~-~~~lv~~~~~~n 149 (353)
T TIGR03235 79 LARAGEQKGKKHIITSAIEHPAVLEPIRAL-----ERNGFTVTYLP--VD-ESGRIDVDELADAIRP-DTLLVSIMHVNN 149 (353)
T ss_pred HHHhcccCCCCeeeEcccccHHHHHHHHHH-----HhcCCEEEEEc--cC-CCCcCCHHHHHHhCCC-CCEEEEEEcccC
Confidence 75 366 78998888888876554322 22365565554 44 4578999999999987 89999887 666
Q ss_pred -CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEeCCCCcCCCCCc-eEEEEeCCcch------h
Q 018231 206 -YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKE------I 277 (359)
Q Consensus 206 -~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~------~ 277 (359)
+|.+.|+++|.++|+++|+++++|++|+.|..+.++..+. +|++++|+||+ .||+| |+++++++... .
T Consensus 150 ~tG~~~~~~~I~~l~~~~~~~~ivD~a~~~g~~~~~~~~~~---~D~~~~s~~K~-~gp~g~g~l~~~~~~~~~~~~~~~ 225 (353)
T TIGR03235 150 ETGSIQPIREIAEVLEAHEAFFHVDAAQVVGKITVDLSADR---IDLISCSGHKI-YGPKGIGALVIRKRGKPKAPLKPI 225 (353)
T ss_pred CceeccCHHHHHHHHHHcCCEEEEEchhhcCCccccccccC---CCEEEeehhhc-CCCCceEEEEEccCcccccccCce
Confidence 8999999999999999999999999999999998887666 99999999998 47888 99999985310 0
Q ss_pred ccCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhc
Q 018231 278 NKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCT 321 (359)
Q Consensus 278 ~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~ 321 (359)
..+++. ......||+++..++++.+|++++..
T Consensus 226 ~~~~~~------------~~~~~~gt~~~~~~~al~~al~~~~~ 257 (353)
T TIGR03235 226 MFGGGQ------------ERGLRPGTLPVHLIVGMGEAAEIARR 257 (353)
T ss_pred eeCCCC------------cCccccCCCChHHHHHHHHHHHHHHh
Confidence 011100 00112489999999999999998763
No 25
>PLN02409 serine--glyoxylate aminotransaminase
Probab=99.94 E-value=2.8e-25 Score=214.05 Aligned_cols=256 Identities=15% Similarity=0.157 Sum_probs=182.9
Q ss_pred CceeeCCCCCCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-HHH
Q 018231 48 GLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNF 126 (359)
Q Consensus 48 ~i~l~~~~~~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~ 126 (359)
...+.+++..+++.|++++...+.++. + ....++.+.+++++++++|++.++ .++++++++ ++.
T Consensus 10 ~~l~~pGP~~~~~~V~~a~~~~~~~~~-----------~-~~~~~~~~~~~~~l~~~~g~~~~~---~vi~~~~gt~a~~ 74 (401)
T PLN02409 10 NHLFVPGPVNIPERVLRAMNRPNEDHR-----------S-PAFPALTKELLEDVKYIFKTKSGT---PFIFPTTGTGAWE 74 (401)
T ss_pred ceeccCCCCCCCHHHHHHhcCCCCCCC-----------C-HHHHHHHHHHHHHHHHHhCCCCCC---EEEEeCCcHHHHH
Confidence 356788999999999999877543311 1 234556667889999999997644 466666667 888
Q ss_pred HHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhh---hCCcEEEEc-
Q 018231 127 QVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL---FRPKLIVAG- 202 (359)
Q Consensus 127 ~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~---~~~k~v~l~- 202 (359)
.++..+++|||+|+++++.|.+.. + ...+...|.+++.++. + .+..+|++++++.+++ .++++|+++
T Consensus 75 ~a~~~~~~~Gd~Vlv~~~~~~~~~--~----~~~~~~~g~~v~~v~~--~-~~~~~~~~~l~~~l~~~~~~~~k~v~~~~ 145 (401)
T PLN02409 75 SALTNTLSPGDKVVSFRIGQFSLL--W----IDQMQRLNFDVDVVES--P-WGQGADLDILKSKLRQDTNHKIKAVCVVH 145 (401)
T ss_pred HHHHhcCCCCCEEEEeCCCchhHH--H----HHHHHHcCCceEEEEC--C-CCCCCCHHHHHHHHhhCcCCCccEEEEEe
Confidence 788888999999999986554331 1 1123445766766653 3 2345799999999985 368999887
Q ss_pred CCC-CCChhhHHHHHHH--HHHcCCEEEEeccccccccccCCCCCCCCCceEEEeCCCCcCCCCCc-eEEEEeCCcchhc
Q 018231 203 ASA-YARLYDYERIRKV--CNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEIN 278 (359)
Q Consensus 203 ~~n-~g~~~~l~~i~~l--a~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~~ 278 (359)
++| ||.+.|+++|.++ |+++|+++++|++|++|..++++..++ +|++++|+||||++|.| |++++++++....
T Consensus 146 ~~~~tG~~~~~~~i~~l~~~~~~g~~~vvD~v~s~g~~~id~~~~~---~D~~~~s~~K~l~~P~G~G~l~~~~~~~~~~ 222 (401)
T PLN02409 146 NETSTGVTNDLAGVRKLLDCAQHPALLLVDGVSSIGALDFRMDEWG---VDVALTGSQKALSLPTGLGIVCASPKALEAS 222 (401)
T ss_pred ecccccccCCHHHHHHHHhhhccCcEEEEEcccccCCccccccccC---ccEEEEcCccccCcCCCcceeEECHHHHHHH
Confidence 555 8999999999999 999999999999999999998887777 99999999999999999 9999988642211
Q ss_pred cC--CcchhhhHHHhhccccCCCC-CCCCcHHHHHHHHHHHHHHhccccchhHhhh
Q 018231 279 KQ--GKEVFYDYEEKINQAVFPGL-QGGPHNHTITGLAVALKQVCTLITFSHIHVF 331 (359)
Q Consensus 279 ~~--g~~~~~~~~~~~~~~~~~~~-~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~ 331 (359)
.. ..+..+++....+....... .+||++..++++.+|++++.++ ++++++.+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~g~~~~~Tp~~~~~~al~~al~~~~~~-G~e~i~~~ 277 (401)
T PLN02409 223 KTAKSPRVFFDWADYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEE-GLENVIAR 277 (401)
T ss_pred hcCCCCCeecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHh-hHHHHHHH
Confidence 10 01111111111111101112 3699999999999999998754 45554443
No 26
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=99.93 E-value=4.9e-25 Score=212.36 Aligned_cols=249 Identities=20% Similarity=0.241 Sum_probs=177.0
Q ss_pred ceee-CCCCCCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-HHH
Q 018231 49 LELI-PSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNF 126 (359)
Q Consensus 49 i~l~-~~~~~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~ 126 (359)
+-|+ ++..++|+.+++++.+.+.... ..+.. .|.......++.+.+++.+++++|++++ +|++++|++ ++.
T Consensus 19 ~yl~~~~~~~~p~~v~~a~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~l~~~ia~~~~~~~~----~v~~~~~~t~~l~ 91 (397)
T TIGR01976 19 VFFDNPAGTQIPQSVADAVSAALTRSN--ANRGG-AYESSRRADQVVDDAREAVADLLNADPP----EVVFGANATSLTF 91 (397)
T ss_pred EEecCCccCCCCHHHHHHHHHHHHhcC--CCCCC-CchHHHHHHHHHHHHHHHHHHHcCCCCC----eEEEeCCHHHHHH
Confidence 5664 5667889999999999876522 11111 1222233344455688999999999764 399999998 655
Q ss_pred HHHHhh---cCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc-
Q 018231 127 QVYTAL---LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG- 202 (359)
Q Consensus 127 ~~~~al---~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~- 202 (359)
.++.++ ++|||+|++++++|.+++.++.. .+...|.++..++ .+++++.+|++++++.+++ ++++|+++
T Consensus 92 ~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~----~~~~~g~~~~~~~--~~~~~~~~~~~~l~~~i~~-~~~lv~i~~ 164 (397)
T TIGR01976 92 LLSRAISRRWGPGDEVIVTRLDHEANISPWLQ----AAERAGAKVKWAR--VDEATGELHPDDLASLLSP-RTRLVAVTA 164 (397)
T ss_pred HHHHHHHhcCCCCCEEEEcCCchHhHHHHHHH----HHHhcCCEEEEEe--ccccCCCcCHHHHHHhcCC-CceEEEEeC
Confidence 455554 78999999999888876543321 2334566666665 4433578999999999987 89999988
Q ss_pred CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEeCCCCcCCCCCceEEEEeCCcchhccCC
Q 018231 203 ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQG 281 (359)
Q Consensus 203 ~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~gG~l~~~~~~~~~~~~g 281 (359)
++| +|.+.|+++|.++|+++|+++++|++|+.|..+.++...+ +|++++|+||++ ||+.|+++++++....+..-
T Consensus 165 ~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~---~d~~~~s~~K~~-g~~~G~l~~~~~~~~~l~~~ 240 (397)
T TIGR01976 165 ASNTLGSIVDLAAITELVHAAGALVVVDAVHYAPHGLIDVQATG---ADFLTCSAYKFF-GPHMGILWGRPELLMNLPPY 240 (397)
T ss_pred CCCCCCccCCHHHHHHHHHHcCCEEEEehhhhccccCCCHHHcC---CCEEEEechhhc-CCceEEEEEcHHHHhhCCCc
Confidence 777 9999999999999999999999999998887776665555 899999999987 67679999987431110000
Q ss_pred cchhhhHHHhhccccCCCC--CCCCcHHHHHHHHHHHHHHhcc
Q 018231 282 KEVFYDYEEKINQAVFPGL--QGGPHNHTITGLAVALKQVCTL 322 (359)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~--~gt~~~~~i~al~~Al~~~~~~ 322 (359)
... +.....+.+ .||+++..++++.+|++++.+.
T Consensus 241 ~~~-------~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~ 276 (397)
T TIGR01976 241 KLT-------FSYDTGPERFELGTPQYELLAGVVAAVDYLAGL 276 (397)
T ss_pred ccc-------CccCCCcchhcCCCCCHHHHHHHHHHHHHHHHh
Confidence 000 000011122 3899999999999999998754
No 27
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=99.93 E-value=9.8e-25 Score=198.24 Aligned_cols=229 Identities=19% Similarity=0.224 Sum_probs=172.7
Q ss_pred CCCCcHHHHHHHHhhhhcc-CCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCC-CCCceeEEECCChH-HHHHHHHh
Q 018231 55 ENFTSVSVMQAVGSVMTNK-YSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDP-EKWGVNVQSLSGSP-SNFQVYTA 131 (359)
Q Consensus 55 ~~~~~~~v~~al~~~~~~~-~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~-~~~~~~v~~tsG~~-a~~~~~~a 131 (359)
+.++||+|++|+.+.+.++ | ||+.. .+++-+++.+|.++.++.+. ++ .|++++|.. ++..++++
T Consensus 36 Df~~pp~i~~Al~~rvdhGvf--GY~~~--------~~~~~~ai~~w~~~r~~~~i~~e---~i~~~p~VVpgi~~~I~~ 102 (388)
T COG1168 36 DFPTPPEIIEALRERVDHGVF--GYPYG--------SDELYAAIAHWFKQRHQWEIKPE---WIVFVPGVVPGISLAIRA 102 (388)
T ss_pred cCCCCHHHHHHHHHHHhcCCC--CCCCC--------CHHHHHHHHHHHHHhcCCCCCcc---eEEEcCcchHhHHHHHHH
Confidence 3467999999999999885 4 66522 23455567799999999843 34 399999999 88889999
Q ss_pred hcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCCh
Q 018231 132 LLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARL 209 (359)
Q Consensus 132 l~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~ 209 (359)
+.+|||.|++.+| .|+.+...+...|+++...|+..+.+.+.+|+++||+.+.+.++|++++| ||| +|++
T Consensus 103 ~T~~gd~Vvi~tP--------vY~PF~~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~vkl~iLCnPHNP~Grv 174 (388)
T COG1168 103 LTKPGDGVVIQTP--------VYPPFYNAIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVDERVKLFILCNPHNPTGRV 174 (388)
T ss_pred hCcCCCeeEecCC--------CchHHHHHHhhcCcEEEeccccccCCcEEecHHHHHHHHhcCCccEEEEeCCCCCCCcc
Confidence 9999999999994 44444446677788887777665545678899999999987678999988 999 9965
Q ss_pred h---hHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCC-------CceEEEeCCCCcCC--CCCceEEEEeCCcchh
Q 018231 210 Y---DYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE-------YADVVTTTTHKSLR--GPRGAMIFFRKGVKEI 277 (359)
Q Consensus 210 ~---~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~-------~~D~v~~s~~K~l~--gp~gG~l~~~~~~~~~ 277 (359)
+ ++.+|.++|++||+.||+|+.|+--++ .+..+.++. ...+.++|++|+|+ |...+++++.++
T Consensus 175 wt~eeL~~i~elc~kh~v~VISDEIHaDlv~-~g~~h~~~a~ls~~~a~~~it~~saSKtFNlaGL~~a~~Ii~n~---- 249 (388)
T COG1168 175 WTKEELRKIAELCLRHGVRVISDEIHADLVL-GGHKHIPFASLSERFADNSITLTSASKTFNLAGLKCAYIIISNR---- 249 (388)
T ss_pred ccHHHHHHHHHHHHHcCCEEEeecccccccc-cCCCccchhhcChhhhcceEEEeeccccccchhhhheeEEecCH----
Confidence 5 688899999999999999999964333 332333332 23488999999884 555588888875
Q ss_pred ccCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHH
Q 018231 278 NKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQ 318 (359)
Q Consensus 278 ~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~ 318 (359)
+++.++.+.......+.||.+++.|..+|+++
T Consensus 250 ---------~lr~~~~~~l~~~~~~~~n~lg~~A~~aAY~~ 281 (388)
T COG1168 250 ---------ELRAKFLKRLKRNGLHGPSALGIIATEAAYNQ 281 (388)
T ss_pred ---------HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHh
Confidence 55554443333334589999999999999864
No 28
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=99.93 E-value=1.3e-24 Score=207.69 Aligned_cols=254 Identities=16% Similarity=0.150 Sum_probs=177.9
Q ss_pred CCCCCCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHh
Q 018231 53 PSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTA 131 (359)
Q Consensus 53 ~~~~~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~a 131 (359)
.+.+++|+.+.+++.+.+...+ +++....+............+++.+++++|++..+ +|++|+|++ ++..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~---~v~~~~g~t~a~~~~~~~ 80 (373)
T cd06453 6 AATSQKPQPVIDAIVDYYRHYN--ANVHRGVHELSARATDAYEAAREKVARFINAPSPD---EIIFTRNTTEAINLVAYG 80 (373)
T ss_pred ccccCCCHHHHHHHHHHHHhcC--CCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCC---eEEEeCCHHHHHHHHHHH
Confidence 4567889999999999886643 33322111111223333345779999999997322 599999998 77778888
Q ss_pred hcC---CCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-C
Q 018231 132 LLK---PHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-Y 206 (359)
Q Consensus 132 l~~---~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~ 206 (359)
+.. +||+|++++++|++.+.+... .++..|.+++.++ .+ +++.+|++++++.+++ ++++|+++ ++| +
T Consensus 81 l~~~~~~g~~vl~~~~~~~~~~~~~~~----~~~~~g~~~~~v~--~~-~~~~~d~~~l~~~l~~-~~~~v~~~~~~~~t 152 (373)
T cd06453 81 LGRANKPGDEIVTSVMEHHSNIVPWQQ----LAERTGAKLKVVP--VD-DDGQLDLEALEKLLTE-RTKLVAVTHVSNVL 152 (373)
T ss_pred hhhcCCCCCEEEECcchhHHHHHHHHH----HHhhcCcEEEEee--cC-CCCCcCHHHHHHHhcC-CceEEEEeCccccc
Confidence 876 999999999888876443321 1224466676665 44 5678999999999987 89999987 666 8
Q ss_pred CChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEeCCCCcCCCCCceEEEEeCCcchh---cc-CCc
Q 018231 207 ARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEI---NK-QGK 282 (359)
Q Consensus 207 g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~gG~l~~~~~~~~~---~~-~g~ 282 (359)
|...|+++|.++|+++|+++++|++|+.|..+.+....+ +|++++|+||+++++..|+++++++.... .. +|.
T Consensus 153 G~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~---~d~~~~s~~K~~~~~g~g~~~~~~~~~~~~~~~~~g~~ 229 (373)
T cd06453 153 GTINPVKEIGEIAHEAGVPVLVDGAQSAGHMPVDVQDLG---CDFLAFSGHKMLGPTGIGVLYGKEELLEEMPPYGGGGE 229 (373)
T ss_pred CCcCCHHHHHHHHHHcCCEEEEEhhhhcCceeeeccccC---CCEEEeccccccCCCCcEEEEEchHHhhcCCCeecCCC
Confidence 999999999999999999999999999888877665555 89999999999977433999998764221 11 222
Q ss_pred chhhhHHHhhccccCCCC--CCCCcHHHHHHHHHHHHHHhcc
Q 018231 283 EVFYDYEEKINQAVFPGL--QGGPHNHTITGLAVALKQVCTL 322 (359)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~--~gt~~~~~i~al~~Al~~~~~~ 322 (359)
...............+.. .||+++..+.++.+|++.+.++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~~~ 271 (373)
T cd06453 230 MIEEVSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDYLEKI 271 (373)
T ss_pred ccccccccccccCCCccccCCCCCCHHHHHHHHHHHHHHHHc
Confidence 111000000011111222 2799999999999999988764
No 29
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=99.93 E-value=1.5e-24 Score=209.36 Aligned_cols=264 Identities=19% Similarity=0.218 Sum_probs=182.3
Q ss_pred Cceee-CCCCCCcHHHHHHHHhhhhccCCCCCCCC-cccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-H
Q 018231 48 GLELI-PSENFTSVSVMQAVGSVMTNKYSEGYPGA-RYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-S 124 (359)
Q Consensus 48 ~i~l~-~~~~~~~~~v~~al~~~~~~~~~~g~~~~-~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a 124 (359)
.+-|+ ++.+++|+.|.+++.+.+...+ +++.. .++.+......+ +.+++.+++++|+++.+ +|++|+|++ +
T Consensus 19 ~~yld~~~~~~~p~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~r~~ia~~~~~~~~~---~v~~~~g~t~~ 92 (403)
T TIGR01979 19 LVYLDSAATSQKPQQVIDAVAEYYRNSN--ANVHRGIHTLSVRATEAY-EAVREKVAKFINAASDE---EIVFTRGTTES 92 (403)
T ss_pred eEEEeCccccCCCHHHHHHHHHHHHhCC--CCCCCCccHHHHHHHHHH-HHHHHHHHHHhCcCCCC---eEEEeCCHHHH
Confidence 35665 4555789999999998876644 33221 111111222223 34789999999997322 599999999 7
Q ss_pred HHHHHHhh----cCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEE
Q 018231 125 NFQVYTAL----LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIV 200 (359)
Q Consensus 125 ~~~~~~al----~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~ 200 (359)
+..++.++ +++||+|++++++|++...++.. .+...|.+++.++ .+ +++.+|++++++.+++ +|++++
T Consensus 93 l~~~~~~~~~~~~~~g~~vl~~~~~~~s~~~~~~~----~~~~~g~~~~~v~--~~-~~~~~~~~~l~~~i~~-~~~lv~ 164 (403)
T TIGR01979 93 INLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQL----LAERTGATLKFIP--LD-DDGTLDLDDLEKLLTE-KTKLVA 164 (403)
T ss_pred HHHHHHHhhhhcCCCCCEEEECcchhhHHHHHHHH----HHHhcCcEEEEEe--cC-CCCCCCHHHHHHHhcc-CCeEEE
Confidence 66566654 68999999999988876543321 2234566666665 44 5578999999999987 899998
Q ss_pred Ec-CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEeCCCCcCCCCCc-eEEEEeCCcchh
Q 018231 201 AG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEI 277 (359)
Q Consensus 201 l~-~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~ 277 (359)
++ ++| +|...|+++|.++|+++|+++++|++|+.|..+.++...+ +|++++|+||++ ||.| |+++++++....
T Consensus 165 ~~~~~~~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~g~~~~~~~~~~---~d~~~~s~~K~~-gp~G~g~l~~~~~~~~~ 240 (403)
T TIGR01979 165 ITHVSNVLGTVNPVEEIAKLAHQVGAKVLVDGAQAVPHMPVDVQALD---CDFYVFSGHKMY-GPTGIGVLYGKEELLEQ 240 (403)
T ss_pred EEcccccccccCCHHHHHHHHHHcCCEEEEEchhhcCccccCccccC---CCEEEEeccccc-CCCCceEEEEchHHHhc
Confidence 87 667 8999999999999999999999999999998887776555 899999999965 7888 999998764211
Q ss_pred ---ccCCcchh--hhHHHhhccccCCCC--CCCCcHHHHHHHHHHHHHHhccccchhHhhh
Q 018231 278 ---NKQGKEVF--YDYEEKINQAVFPGL--QGGPHNHTITGLAVALKQVCTLITFSHIHVF 331 (359)
Q Consensus 278 ---~~~g~~~~--~~~~~~~~~~~~~~~--~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~ 331 (359)
...|+... +.. ........+.+ .||+++..++++.+|++++.+. +..+++++
T Consensus 241 ~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~-g~~~~~~~ 299 (403)
T TIGR01979 241 MPPFLGGGEMIAEVSF-EETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAI-GLENIEAH 299 (403)
T ss_pred CCCeecCCCceeeccc-CccccCCChhhcCCCCccHHHHHHHHHHHHHHHHh-CHHHHHHH
Confidence 22222110 000 00000011122 3899999999999999988753 34444433
No 30
>PRK02948 cysteine desulfurase; Provisional
Probab=99.93 E-value=8.6e-25 Score=209.57 Aligned_cols=238 Identities=17% Similarity=0.207 Sum_probs=175.5
Q ss_pred CCCCCCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHh
Q 018231 53 PSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTA 131 (359)
Q Consensus 53 ~~~~~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~a 131 (359)
++..++|+.|++++.+++...+ +++...+..+ .....+.+.+++.+++++|++++ +|++++|++ ++..++.+
T Consensus 7 a~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~r~~la~~~g~~~~----~i~~~~g~t~a~~~~~~~ 79 (381)
T PRK02948 7 AATTPMSKEALQTYQKAASQYF--GNESSLHDIG-GTASSLLQVCRKTFAEMIGGEEQ----GIYFTSGGTESNYLAIQS 79 (381)
T ss_pred CCCCCCCHHHHHHHHHHHHhcC--CCCccccHHH-HHHHHHHHHHHHHHHHHhCCCCC----eEEEeCcHHHHHHHHHHH
Confidence 4556889999999998887533 3333222222 22234445688999999999775 499999988 77767777
Q ss_pred hc----CCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-
Q 018231 132 LL----KPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA- 205 (359)
Q Consensus 132 l~----~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n- 205 (359)
++ ++||+|++...+|+++..... .+...|.+++.++ .+ +++.+|++++++.+++ ++++|+++ ++|
T Consensus 80 ~~~~~~~~g~~vv~~~~~h~s~~~~~~-----~~~~~g~~v~~v~--~~-~~~~~d~~~l~~~l~~-~~~lv~~~~~~n~ 150 (381)
T PRK02948 80 LLNALPQNKKHIITTPMEHASIHSYFQ-----SLESQGYTVTEIP--VD-KSGLIRLVDLERAITP-DTVLASIQHANSE 150 (381)
T ss_pred HHHhccCCCCEEEECCcccHHHHHHHH-----HHHhCCCEEEEEe--eC-CCCCCCHHHHHHhcCC-CCEEEEEECCcCC
Confidence 64 679999999988887755433 2233466666665 44 4578999999999987 88999887 666
Q ss_pred CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEeCCCCcCCCCCc-eEEEEeCCcchh-ccCCcc
Q 018231 206 YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEI-NKQGKE 283 (359)
Q Consensus 206 ~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~-~~~g~~ 283 (359)
+|.+.|+++|.++|+++|+++++|++|++|..+.++...+ +|++++|+||++ ||.| |+++++++.... ...++.
T Consensus 151 tG~~~~~~~I~~l~~~~~~~vivD~~~~~g~~~~~~~~~~---~d~~~~s~~K~~-gp~G~G~l~~~~~~~~~~~~~~~~ 226 (381)
T PRK02948 151 IGTIQPIAEIGALLKKYNVLFHSDCVQTFGKLPIDVFEMG---IDSLSVSAHKIY-GPKGVGAVYINPQVRWKPVFPGTT 226 (381)
T ss_pred cEeehhHHHHHHHHHHcCCEEEEEChhhccccccCcccCC---CCEEEecHHhcC-CCCcEEEEEEcCCCCCCCcccCCC
Confidence 8999999999999999999999999999998888777666 999999999964 7888 999998753110 000000
Q ss_pred hhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhc
Q 018231 284 VFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCT 321 (359)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~ 321 (359)
.......||++.++++|+.+|++.+.+
T Consensus 227 -----------~~~~~~~~t~~~~~~~a~~~al~~~~~ 253 (381)
T PRK02948 227 -----------HEKGFRPGTVNVPGIAAFLTAAENILK 253 (381)
T ss_pred -----------CCCCcCCCCccHHHHHHHHHHHHHHHH
Confidence 001113489999999999999988754
No 31
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=99.93 E-value=1.6e-24 Score=207.87 Aligned_cols=237 Identities=17% Similarity=0.282 Sum_probs=173.6
Q ss_pred CCCCCCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCC-CCCCCceeEEECCChH-HHHHHHH
Q 018231 53 PSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRL-DPEKWGVNVQSLSGSP-SNFQVYT 130 (359)
Q Consensus 53 ~~~~~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~-~~~~~~~~v~~tsG~~-a~~~~~~ 130 (359)
++..++++.|++++.+++.+.+ ++++..+..+......+++ .++.+.+.+|+ +++ +|++|+|++ ++..++.
T Consensus 6 aa~~~~~~~v~~~~~~~~~~~~--~n~~~~~~~~~~~~~~l~~-a~~~~~~~~~~~~~~----~i~~t~g~teal~~~~~ 78 (382)
T TIGR03403 6 NATTMLDPKVKELMDPFFCDIY--GNPNSLHQFGTATHPAIAE-ALDKLYKGINARDLD----DIIITSCATESNNWVLK 78 (382)
T ss_pred cCCCCCCHHHHHHHHHHHHhcC--cCCccccHHHHHHHHHHHH-HHHHHHHHcCcCCCC----eEEEeCCHHHHHHHHHH
Confidence 4556788999999999887645 4443322112233455655 44556667777 444 599999999 7776777
Q ss_pred hhc-----CC-CCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc-C
Q 018231 131 ALL-----KP-HDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-A 203 (359)
Q Consensus 131 al~-----~~-Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~-~ 203 (359)
++. ++ ||+|+++..+|+++..+.. .+...|.+++.++ .+ +++.+|++++++.+++ ++++++++ +
T Consensus 79 ~~~~~~~~~~~~~~vi~~~~e~ps~~~~~~-----~~~~~G~~v~~v~--~~-~~g~~d~~~l~~~i~~-~t~lv~~~~~ 149 (382)
T TIGR03403 79 GVYFDEILKGGKNHIITTEVEHPAVRATCA-----FLESLGVEVTYLP--IN-EQGTITAEQVREAITE-KTALVSVMWA 149 (382)
T ss_pred HHHHhhcccCCCCEEEEcCCccHHHHHHHH-----HHHHCCCEEEEEe--cC-CCCCCCHHHHHHhccc-CCeEEEEEcc
Confidence 652 55 4789999988988765443 1223466666665 44 4578899999999987 89998887 7
Q ss_pred CC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEeCCCCcCCCCCc-eEEEEeCCcc--hhcc
Q 018231 204 SA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVK--EINK 279 (359)
Q Consensus 204 ~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~--~~~~ 279 (359)
+| +|.+.|+++|.++|+++|+++++|++|+.|..+.++..++ +|++++|+||+ .||+| |+++++++.. +.+.
T Consensus 150 ~n~tG~~~~~~~I~~la~~~g~~~ivD~a~~~g~~~~~~~~~~---~D~~~~s~~K~-~gp~G~g~l~vr~~~~~~p~~~ 225 (382)
T TIGR03403 150 NNETGMIFPIKEIGEICKERGVLFHTDAVQAIGKIPVDVQKAG---VDFLSFSAHKF-HGPKGVGGLYIRKGVELTPLFH 225 (382)
T ss_pred cCCCccccCHHHHHHHHHHcCCEEEEechhhcCCCccCccccC---CCEEEEcchhh-CCCCceEEEEECCCCCCCCccc
Confidence 77 8999999999999999999999999999998888776666 99999999996 58988 9999988642 2122
Q ss_pred CCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhc
Q 018231 280 QGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCT 321 (359)
Q Consensus 280 ~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~ 321 (359)
+++. . .....||+|+..++++..|++++.+
T Consensus 226 g~~~--------~----~~~~~gt~~~~~~~al~~al~~~~~ 255 (382)
T TIGR03403 226 GGEH--------M----GGRRSGTLNVPYIVAMGEAMRLANE 255 (382)
T ss_pred CCCC--------C----CCcccCCcChHHHHHHHHHHHHHHH
Confidence 2210 0 0112489999999999999987765
No 32
>PRK14012 cysteine desulfurase; Provisional
Probab=99.93 E-value=1.8e-24 Score=208.89 Aligned_cols=238 Identities=18% Similarity=0.253 Sum_probs=171.7
Q ss_pred CCCCCCcHHHHHHHHhhhh--ccCCCCCCCCcccCCchh-HHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-HHHHH
Q 018231 53 PSENFTSVSVMQAVGSVMT--NKYSEGYPGARYYGGNEY-IDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQV 128 (359)
Q Consensus 53 ~~~~~~~~~v~~al~~~~~--~~~~~g~~~~~~~~~~~~-~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~ 128 (359)
++..++|+.|++++.+++. +.+ +.+...... ..+ .....+.+++.+++++|+++++ |++++|++ ++..+
T Consensus 10 a~~~~~~~~v~~a~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~r~~ia~~~g~~~~~----v~~~~g~t~al~~~ 82 (404)
T PRK14012 10 SATTPVDPRVAEKMMPYLTMDGTF--GNPASRSHR-FGWQAEEAVDIARNQIADLIGADPRE----IVFTSGATESDNLA 82 (404)
T ss_pred cCCCCCCHHHHHHHHHHHHhcccC--cCCCchhhH-HHHHHHHHHHHHHHHHHHHcCcCcCe----EEEeCCHHHHHHHH
Confidence 4556889999999999876 434 323221100 011 1233344779999999998754 88999988 76656
Q ss_pred HHhh----cCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc-C
Q 018231 129 YTAL----LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-A 203 (359)
Q Consensus 129 ~~al----~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~-~ 203 (359)
+.++ +++||+|++++.+|+++..++... ...|.+++.++ .+ +++.+|+++|++.+++ ++++++++ +
T Consensus 83 l~~l~~~~~~~gd~Vi~~~~~~~s~~~~~~~~-----~~~g~~~~~v~--~~-~~g~~d~~~l~~~i~~-~t~lv~~~~~ 153 (404)
T PRK14012 83 IKGAAHFYQKKGKHIITSKTEHKAVLDTCRQL-----EREGFEVTYLD--PQ-SNGIIDLEKLEAAMRD-DTILVSIMHV 153 (404)
T ss_pred HHHHHHhhcCCCCEEEEecCccHHHHHHHHHH-----HhCCCEEEEEc--cC-CCCcCCHHHHHHhcCC-CCEEEEEECc
Confidence 6655 479999999998888776554321 12355565554 44 5678999999999987 89998887 6
Q ss_pred CC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEeCCCCcCCCCCc-eEEEEeCCcchh----
Q 018231 204 SA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEI---- 277 (359)
Q Consensus 204 ~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~---- 277 (359)
+| +|.+.|+++|.++|+++|+++|+|++|++|..+.++.... +|++++|+|| +.||.| |+++++++....
T Consensus 154 ~n~tG~~~~~~~I~~la~~~g~~vivD~a~~~g~~~~~~~~~~---~D~~~~s~~K-~~gp~g~G~l~~~~~~~~~~~~~ 229 (404)
T PRK14012 154 NNEIGVIQDIAAIGEICRERGIIFHVDAAQSVGKVPIDLSKLK---VDLMSFSAHK-IYGPKGIGALYVRRKPRVRLEAQ 229 (404)
T ss_pred CCCccchhhHHHHHHHHHHcCCEEEEEcchhcCCcccCcccCC---CCEEEEehhh-ccCCCceEEEEEecCCCCCCCce
Confidence 66 8999999999999999999999999999999887766555 8999999999 457878 999988753111
Q ss_pred ccCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhcc
Q 018231 278 NKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTL 322 (359)
Q Consensus 278 ~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~~ 322 (359)
..+++. . .....||+++..+.++.+|++.+...
T Consensus 230 ~~g~~~---~---------~~~~~gt~~~~~~~~l~~al~~~~~~ 262 (404)
T PRK14012 230 MHGGGH---E---------RGMRSGTLPTHQIVGMGEAARIAKEE 262 (404)
T ss_pred ecCCCc---c---------CCccCCCcCHHHHHHHHHHHHHHHhh
Confidence 111110 0 01124789999999999999877643
No 33
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=99.93 E-value=3.4e-24 Score=203.47 Aligned_cols=247 Identities=16% Similarity=0.086 Sum_probs=173.3
Q ss_pred ceeeCCCCCCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-HHHH
Q 018231 49 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQ 127 (359)
Q Consensus 49 i~l~~~~~~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~ 127 (359)
+++++++.++++.|.+++.+.+... . + ....++.+.+++.+++++|++++. .+++++|++ ++..
T Consensus 1 ~~~~~~~~~~~~~v~~a~~~~~~~~---~------~---~~~~~~~~~~~~~la~~~g~~~~~---~~~~~~~~t~al~~ 65 (356)
T cd06451 1 LLLIPGPSNVPPRVLKAMNRPMLGH---R------S---PEFLALMDEILEGLRYVFQTENGL---TFLLSGSGTGAMEA 65 (356)
T ss_pred CcccCCCcCCCHHHHHHhCCCccCC---C------C---HHHHHHHHHHHHHHHHHhcCCCCC---EEEEecCcHHHHHH
Confidence 4688999999999999997654321 0 1 122334445789999999995543 466676656 8887
Q ss_pred HHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-
Q 018231 128 VYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA- 205 (359)
Q Consensus 128 ~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n- 205 (359)
++.+++++||+|++..+.|.+.. + ...+...|.+++.++ .+ +++.+|++++++.++++++++|+++ ++|
T Consensus 66 ~~~~~~~~g~~vl~~~~~~~~~~--~----~~~~~~~g~~~~~v~--~~-~~~~~~~~~l~~~i~~~~~~~v~i~~~~~~ 136 (356)
T cd06451 66 ALSNLLEPGDKVLVGVNGVFGDR--W----ADMAERYGADVDVVE--KP-WGEAVSPEEIAEALEQHDIKAVTLTHNETS 136 (356)
T ss_pred HHHHhCCCCCEEEEecCCchhHH--H----HHHHHHhCCCeEEee--cC-CCCCCCHHHHHHHHhccCCCEEEEeccCCC
Confidence 88899999999999875554421 1 112344566666665 44 3478899999999976579999887 666
Q ss_pred CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEeCCCCcCCCCCc-eEEEEeCCcchhcc--CCc
Q 018231 206 YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEINK--QGK 282 (359)
Q Consensus 206 ~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~~~--~g~ 282 (359)
+|.+.|+++|.++|+++|+++++|++|++|..+.+....+ +|++++|+||+|++|.| |+++++++...... .+.
T Consensus 137 ~G~~~~~~~i~~~a~~~~~~li~D~~~~~g~~~~~~~~~~---~d~~~~s~~K~l~~p~g~G~l~~~~~~~~~~~~~~~~ 213 (356)
T cd06451 137 TGVLNPLEGIGALAKKHDALLIVDAVSSLGGEPFRMDEWG---VDVAYTGSQKALGAPPGLGPIAFSERALERIKKKTKP 213 (356)
T ss_pred cccccCHHHHHHHHHhcCCEEEEeeehhccCccccccccC---ccEEEecCchhccCCCCcceeEECHHHHHHHHhcCCC
Confidence 8999999999999999999999999999888776554444 89999999999999988 99999875421111 111
Q ss_pred chhh-hHHHhhccccCC-CCCCCCcHHHHHHHHHHHHHHhcc
Q 018231 283 EVFY-DYEEKINQAVFP-GLQGGPHNHTITGLAVALKQVCTL 322 (359)
Q Consensus 283 ~~~~-~~~~~~~~~~~~-~~~gt~~~~~i~al~~Al~~~~~~ 322 (359)
..++ +........... ...+|+++..++++.+|++++.+.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~aal~~l~~~ 255 (356)
T cd06451 214 KGFYFDLLLLLKYWGEGYSYPHTPPVNLLYALREALDLILEE 255 (356)
T ss_pred CceeecHHHHHhhhcccCCCCCCChHHHHHHHHHHHHHHHHh
Confidence 1111 111000000001 223789999999999999987764
No 34
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=99.92 E-value=5e-24 Score=202.95 Aligned_cols=255 Identities=13% Similarity=0.081 Sum_probs=174.7
Q ss_pred CceeeCCCCCCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-HHH
Q 018231 48 GLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNF 126 (359)
Q Consensus 48 ~i~l~~~~~~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~ 126 (359)
.+.+.|++..+++.|.+++.....+ + +.++...+ +.+++.+++++|+++++ ..|++|+|++ ++.
T Consensus 4 ~~l~~pgp~~~~~~v~~~~~~~~~~-~-----------~~~~~~~~-~~~r~~la~l~~~~~~~--~~i~~t~~~t~al~ 68 (363)
T TIGR02326 4 YLLLTPGPLTTSRTVKEAMLFDWCT-W-----------DSDYNIVV-EQIRQQLLALATAEEGY--TSVLLQGSGTFAVE 68 (363)
T ss_pred eeEecCCCCCCCHHHHHHhCCCCCC-C-----------ChHHHHHH-HHHHHHHHHHhCCCCCc--eEEEEcCCCHHHHH
Confidence 4578899999999999887764421 1 11333434 34889999999997642 2588888888 888
Q ss_pred HHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhh-CCcEEEEc-CC
Q 018231 127 QVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF-RPKLIVAG-AS 204 (359)
Q Consensus 127 ~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~-~~k~v~l~-~~ 204 (359)
.++.+++.+||.+++....+.+ ... ...+...|.+++.++ .+ +++.+|++++++.+++. +++++.++ .+
T Consensus 69 ~~~~~l~~~~~~vlv~~~~~~~---~~~---~~~a~~~g~~~~~v~--~~-~~~~~d~~~l~~~l~~~~~~~~v~~~~~~ 139 (363)
T TIGR02326 69 AVIGSAVPKDGKLLVVINGAYG---ARI---VQIAEYLGIPHHVVD--TG-EVEPPDVVEVEAILAADPAITHIALVHCE 139 (363)
T ss_pred HHHHhcCCCCCeEEEEeCChhh---HHH---HHHHHHcCCceEEEe--CC-CCCCCCHHHHHHHHhhCCCccEEEEEeec
Confidence 7888998899987775522111 100 012334566666665 33 45788999999998752 35666655 44
Q ss_pred C-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEeCCCCcCCCCCc-eEEEEeCCcchhccCCc
Q 018231 205 A-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEINKQGK 282 (359)
Q Consensus 205 n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~~~~g~ 282 (359)
| +|...|+++|.++|+++|+++++|++|++|..+.++..++ +|++++|+||||+||+| |+++++++.........
T Consensus 140 ~~tG~~~~i~~I~~l~~~~g~~livD~~~~~g~~~~~~~~~~---~D~~~~s~~K~l~~p~G~G~l~~~~~~~~~~~~~~ 216 (363)
T TIGR02326 140 TTTGILNPIEAVAKLAHRHGKVTIVDAMSSFGGIPIDIAELH---IDYLISSANKCIQGVPGFGFVIARQAELAACKGNA 216 (363)
T ss_pred CCccccCcHHHHHHHHHHcCCEEEEEccccccCcccchhhcC---ccEEEecCccccccCCcceEEEECHHHHHHhhcCC
Confidence 5 8999999999999999999999999999999988887776 99999999999999999 99999885321111110
Q ss_pred -chhhhHHHhhccc-cCCC-CCCCCcHHHHHHHHHHHHHHhccccchhHh
Q 018231 283 -EVFYDYEEKINQA-VFPG-LQGGPHNHTITGLAVALKQVCTLITFSHIH 329 (359)
Q Consensus 283 -~~~~~~~~~~~~~-~~~~-~~gt~~~~~i~al~~Al~~~~~~~~~~~~~ 329 (359)
+...++...+... ..++ ...|++.+.+.++.+|++++..++.+.+.+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~ft~~~~~~~al~~al~~l~~~g~~~~~~ 266 (363)
T TIGR02326 217 RSLSLDLYDQWRCMEDNHGKWRFTSPTHVVHAFAQALLELEKEGGVAARH 266 (363)
T ss_pred CceeecHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHH
Confidence 0000111110000 0112 225788999999999999987665454433
No 35
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=99.92 E-value=8.4e-24 Score=203.01 Aligned_cols=204 Identities=15% Similarity=0.108 Sum_probs=153.0
Q ss_pred CceeeC--CCCCCcHHHHHHHHhhhhccCCCCCCCC-cccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-
Q 018231 48 GLELIP--SENFTSVSVMQAVGSVMTNKYSEGYPGA-RYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP- 123 (359)
Q Consensus 48 ~i~l~~--~~~~~~~~v~~al~~~~~~~~~~g~~~~-~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~- 123 (359)
.|+|.+ --+|+++.+++++.++... + +.+.. .+..+..... ..+.+++.+++++|+++ +++++|++
T Consensus 20 ~~~~~~~~~~~p~~~~~~~a~~~~~~~-~--~~~~~~~~~~~~~~~~-~~~~l~~~lA~~~g~~~------~~~~~g~t~ 89 (387)
T PRK09331 20 FINLDPIQRGGILTPEARKALIEYGDG-Y--SVCDYCPGRLDQIKKP-PIADFHEDLAEFLGMDE------ARVTHGARE 89 (387)
T ss_pred ccccChhhcCCCCCHHHHHHHHHHHhc-c--CCCcccccccccccCh-HHHHHHHHHHHHhCCCc------EEEeCCHHH
Confidence 477764 4458899999999998743 3 22211 1111111111 22336699999999964 67788888
Q ss_pred HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhh------CCc
Q 018231 124 SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF------RPK 197 (359)
Q Consensus 124 a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~------~~k 197 (359)
++..++.+++++||+|++..+.|.+.+. .+...|++++.++.+.+ +++.+|++++++.+++. +++
T Consensus 90 a~~~al~~l~~~gd~Vlv~~~~h~s~~~--------~~~~~G~~~~~v~~~~~-~~~~~d~~~l~~~l~~~~~~~~~~~~ 160 (387)
T PRK09331 90 GKFAVMHSLCKKGDYVVLDGLAHYTSYV--------AAERAGLNVREVPKTGY-PEYKITPEAYAEKIEEVKEETGKPPA 160 (387)
T ss_pred HHHHHHHHhcCCCCEEEECCCchHHHHH--------HHHHcCCEEEEEeCccC-cCCCcCHHHHHHHHHHhhhccCCCCE
Confidence 8888999999999999999877766532 23455766666653223 46789999999998742 688
Q ss_pred EEEEc-CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEeCCCCcCCCCCc-eEEEEeCC
Q 018231 198 LIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKG 273 (359)
Q Consensus 198 ~v~l~-~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~ 273 (359)
+|+++ +++ +|.+.|+++|.++|+++|+++++|++|+.|.++.+...++ +|++++|+||++++|.+ |+++++++
T Consensus 161 lV~l~~~~~~tG~~~~l~~I~~la~~~g~~livD~a~~~g~~~~~~~~~g---~D~~~~s~~K~l~~~~~~G~l~~~~~ 236 (387)
T PRK09331 161 LALLTHVDGNYGNLADAKKVAKVAHEYGIPFLLNGAYTVGRMPVDGKKLG---ADFIVGSGHKSMAASAPSGVLATTEE 236 (387)
T ss_pred EEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECCcccCCcCCCHHHcC---CCEEEeeCcccccCCCCEEEEEECHH
Confidence 88887 666 8999999999999999999999999999998887766555 89999999999988776 99888873
No 36
>PLN02724 Molybdenum cofactor sulfurase
Probab=99.92 E-value=6.3e-24 Score=220.18 Aligned_cols=278 Identities=16% Similarity=0.123 Sum_probs=181.7
Q ss_pred CceeeC-CCCCCcH-HHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-H
Q 018231 48 GLELIP-SENFTSV-SVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-S 124 (359)
Q Consensus 48 ~i~l~~-~~~~~~~-~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a 124 (359)
.+-|+. +..++++ .|.+++...+.+.+ +++...+..+....+.+ +.+|+.+++++|+++++ .+|+||+|+| +
T Consensus 35 ~iYLD~Aatt~~~~~~V~~~~~~~~~~~~--~np~s~~~~s~~~~~~~-e~aR~~ia~~lga~~~~--~~VvFtsnaT~a 109 (805)
T PLN02724 35 VVYLDHAGATLYSESQLEAALADFSSNVY--GNPHSQSDSSMRSSDTI-ESARQQVLEYFNAPPSD--YACVFTSGATAA 109 (805)
T ss_pred CEeEeCCCCCCCCHHHHHHHHHHHHhhcc--CCCCcCcchhhhHHHHH-HHHHHHHHHHhCCCccc--eEEEEeCChHHH
Confidence 466764 3445554 55555555555433 34443222222223334 45899999999997653 2589999999 7
Q ss_pred HHHHHHhh-cCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCC-----CCCCCCH--HHHHHHhh----
Q 018231 125 NFQVYTAL-LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNE-----STGYIDY--DQLEKSAT---- 192 (359)
Q Consensus 125 ~~~~~~al-~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~-----~~~~~d~--e~l~~~i~---- 192 (359)
+..+..++ +++||+|+++..+|+++..++.. +...|++++.++++.+. +.+.+|+ ++|++.++
T Consensus 110 lnlva~~l~~~~gd~Iv~t~~eH~svl~~~~~-----a~~~G~~v~~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~ 184 (805)
T PLN02724 110 LKLVGETFPWSSESHFCYTLENHNSVLGIREY-----ALEKGAAAIAVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQ 184 (805)
T ss_pred HHHHHHHCCCCCCCeEEEeeccccchHHHHHH-----HHHcCCeEEeccchhccccccccccccccchhhhhhhhhhhhc
Confidence 66577777 78999999999999988744321 12235556666543111 1233443 56666531
Q ss_pred -----hhCCcEEEEc-CCC-CCChhhHHHHHHHHHHc--------CCEEEEeccccccccccCCCCCCCCCceEEEeCCC
Q 018231 193 -----LFRPKLIVAG-ASA-YARLYDYERIRKVCNKQ--------KAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTH 257 (359)
Q Consensus 193 -----~~~~k~v~l~-~~n-~g~~~~l~~i~~la~~~--------~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~ 257 (359)
..++++|.++ .+| +|.+.|++.|..+++.. ++++++|++|++|+.++++...+ +|++++|+|
T Consensus 185 ~~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~~g~~piDv~~~~---~Dfl~~S~H 261 (805)
T PLN02724 185 KREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDAAKGCGTSPPDLSRYP---ADFVVVSFY 261 (805)
T ss_pred cccccCCCcceEEEEccccCCCCcCCHHHHHHHHHhcccccccCcceEEEeehhhhcCCCCCChhhcC---CCEEEEecc
Confidence 1256888887 777 99999999775555532 36899999999999999998887 999999999
Q ss_pred CcCCCCCc-eEEEEeCCc----chhccCCcchhhhHHH-hh--ccccCCCCC--CCCcHHHHHHHHHHHHHHhccccchh
Q 018231 258 KSLRGPRG-AMIFFRKGV----KEINKQGKEVFYDYEE-KI--NQAVFPGLQ--GGPHNHTITGLAVALKQVCTLITFSH 327 (359)
Q Consensus 258 K~l~gp~g-G~l~~~~~~----~~~~~~g~~~~~~~~~-~~--~~~~~~~~~--gt~~~~~i~al~~Al~~~~~~~~~~~ 327 (359)
||++||.| |++++++++ .+...||++..+.... .+ .....+.++ ||+|+.+++++.+|++++.+ .++++
T Consensus 262 K~~GgP~G~G~L~vr~~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal~~l~~-ig~~~ 340 (805)
T PLN02724 262 KIFGYPTGLGALLVRRDAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALRHGFKLLNR-LTISA 340 (805)
T ss_pred eeccCCCCceEEEEehhhhhhhcCCccCCCceEEEecccceeeccccHHHHhcCCCcchhHHHHHHHHHHHHHH-hChHH
Confidence 99988999 999999864 2334555442211100 00 001112233 99999999999999999875 45666
Q ss_pred Hhhhccccchhh
Q 018231 328 IHVFSLHVYPAF 339 (359)
Q Consensus 328 ~~~~~l~~~~~~ 339 (359)
++.+.......+
T Consensus 341 I~~~~~~L~~~l 352 (805)
T PLN02724 341 IAMHTWALTHYV 352 (805)
T ss_pred HHHHHHHHHHHH
Confidence 665544444333
No 37
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=99.92 E-value=8.8e-24 Score=204.22 Aligned_cols=268 Identities=12% Similarity=0.054 Sum_probs=171.7
Q ss_pred cCceee-CCCCCCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-H
Q 018231 47 KGLELI-PSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-S 124 (359)
Q Consensus 47 ~~i~l~-~~~~~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a 124 (359)
+.+.|+ .+-.++|+.|.+++.+++.. +..+....++.+...+ ..+.+..++ + +++|+++++ |++++|++ +
T Consensus 27 ~~iyld~~a~g~~p~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~-~-~l~g~~~~~----v~~~~~~t~~ 98 (406)
T TIGR01814 27 AVIYLDGNSLGLMPKAARNALKEELDK-WAKIAIRGHNTGKAPW-FTLDESLLK-L-RLVGAKEDE----VVVMNTLTIN 98 (406)
T ss_pred CcEEecCCCcCcCcHHHHHHHHHHHHH-HHHhhhccCccCCCCh-hhhhhhhcc-c-cccCCCCCc----EEEeCCchHH
Confidence 357787 55557799999999887754 3111111111111111 122222333 4 899998764 99999999 6
Q ss_pred HHHHHHhhcCCCC---eeeecCCCCCcccCccccccccceeeeeeeeE--EEecccCCCCCCCCHHHHHHHhh--hhCCc
Q 018231 125 NFQVYTALLKPHD---RIMALDLPHGGHLSHGYQTDTKKISAVSIFFE--TMPYRLNESTGYIDYDQLEKSAT--LFRPK 197 (359)
Q Consensus 125 ~~~~~~al~~~Gd---~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~v~~~~~~~~~~~d~e~l~~~i~--~~~~k 197 (359)
+..++.+++++|+ .|++...+|++...++.. .+...|.+++ .+.++.+ +++.+|++++++.+. ..+|+
T Consensus 99 l~~~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~----~~~~~g~~~~~~~~~~~~~-~~g~~~~~~l~~~~~~~~~~t~ 173 (406)
T TIGR01814 99 LHLLLASFYKPTPKRYKILLEAKAFPSDHYAIES----QLQLHGLTVEESMVQIEPR-EEETLRLEDILDTIEKNGDDIA 173 (406)
T ss_pred HHHHHHHhcCCcCCccEEEecCCCCChHHHHHHH----HHHhcCCCcccceEEeccC-CCCccCHHHHHHHHHhcCCCeE
Confidence 6657788776653 577777788876444321 1122344431 1222233 456789999988874 12789
Q ss_pred EEEEc-CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEeCCCCcCCCCCceEEEEeCCcc
Q 018231 198 LIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVK 275 (359)
Q Consensus 198 ~v~l~-~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~gG~l~~~~~~~ 275 (359)
+|+++ .+| +|.+.|+++|.++|+++|+++++|++|++|.+++++..++ +|++++|+||||+||+||+++++++..
T Consensus 174 lv~~~~v~~~tG~~~~~~~i~~~~~~~g~~~~vD~aq~~G~~~id~~~~g---vD~~~~s~hK~l~g~pG~~l~v~~~~~ 250 (406)
T TIGR01814 174 VILLSGVQYYTGQLFDMAAITRAAHAKGALVGFDLAHAVGNVPLDLHDWG---VDFACWCTYKYLNAGPGAGAFVHEKHA 250 (406)
T ss_pred EEEEeccccccceecCHHHHHHHHHHcCCEEEEEcccccCCcccccccCC---CCEEEEcCccccCCCCCeEEEEehhhh
Confidence 99887 555 8999999999999999999999999999999999887777 999999999999877786677655421
Q ss_pred ----hhccCCcchh--hhHHHhhccccCCCC--CCCCcHHHHHHHHHHHHHHhccccchhHhhh
Q 018231 276 ----EINKQGKEVF--YDYEEKINQAVFPGL--QGGPHNHTITGLAVALKQVCTLITFSHIHVF 331 (359)
Q Consensus 276 ----~~~~~g~~~~--~~~~~~~~~~~~~~~--~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~ 331 (359)
+...++.... +.+.........+.+ .||||+..++++.+|++++.+. ++++++++
T Consensus 251 ~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~-g~~~i~~~ 313 (406)
T TIGR01814 251 HTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIFDQA-GMEALRKK 313 (406)
T ss_pred hhcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHHHHHhc-CHHHHHHH
Confidence 1122211110 000000000011122 3999999999999999998764 44554444
No 38
>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]
Probab=99.92 E-value=2.6e-23 Score=190.81 Aligned_cols=230 Identities=17% Similarity=0.127 Sum_probs=172.0
Q ss_pred cccccccChHHHHHHHHHHHHhhcCce-eeCCCC--CCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHH
Q 018231 24 NAPLEVVDPEIADIIEHEKARQWKGLE-LIPSEN--FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKR 100 (359)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~i~-l~~~~~--~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~ 100 (359)
++.+....|++|..+.+...+.. ..+ |.+|.. ++|+.|.+++.+.+.+..... |....+..++++++++.
T Consensus 9 ~~~l~~~~~~vw~e~~~la~e~~-~~~~LgqGfp~~~~P~fv~ea~~~~~~~~~~~q------Yt~~~G~p~L~~aL~k~ 81 (420)
T KOG0257|consen 9 NRNLSTSKPYVWTEINRLAAEHK-VPNPLGQGFPDFPPPKFVTEAAKNAAKEPSTNQ------YTRGYGLPQLRKALAKA 81 (420)
T ss_pred cccccccCCcHHHHHHHHHHhcC-CCCcccCCCCCCCCcHHHHHHHHHHhccchhcc------ccccCCchHHHHHHHHH
Confidence 56777888899999988655544 334 877655 678999999999887642111 12224467788888899
Q ss_pred HHHHcCC--CCCCCceeEEECCChH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEeccc--
Q 018231 101 ALEAFRL--DPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL-- 175 (359)
Q Consensus 101 ~a~~~g~--~~~~~~~~v~~tsG~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-- 175 (359)
+++++|. +++. +|++|+|+. ++..++++++++||+|++.+ |.|..|...+.+.|...+.++...
T Consensus 82 ~se~~~~~~~~~~---eVlVT~GA~~ai~~~~~~l~~~GDeVii~e--------P~fd~Y~~~~~maG~tpv~v~~~~~~ 150 (420)
T KOG0257|consen 82 YSEFYGGLLDPDD---EVLVTAGANEAISSALLGLLNPGDEVIVFE--------PFFDCYIPQVVMAGGTPVFVPLKPKE 150 (420)
T ss_pred HHHHhccccCCcc---cEEEecCchHHHHHHHHHHcCCCCEEEEec--------CcchhhhhHHhhcCCcceeecccccc
Confidence 9998886 3433 599999999 88889999999999999999 666666657778888887777541
Q ss_pred ---CCCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCC---hhhHHHHHHHHHHcCCEEEEeccccccccccCC----CC
Q 018231 176 ---NESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YAR---LYDYERIRKVCNKQKAIMLADMAHISGLVAAGV----IP 243 (359)
Q Consensus 176 ---~~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~---~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~----~~ 243 (359)
...++.+|.++++.++++ |||+|++| |+| +|. ...|++|++||++||+++|+|++...-...... .-
T Consensus 151 g~~~s~~~~~D~~~le~~~t~-kTk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~as 229 (420)
T KOG0257|consen 151 GNVSSSDWTLDPEELESKITE-KTKAIILNTPHNPTGKVFSREELERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIAS 229 (420)
T ss_pred ccccCccccCChHHHHhhccC-CccEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeeec
Confidence 135789999999999999 99999999 999 894 456899999999999999999996433322210 00
Q ss_pred CCC-CCceEEEeCCCCcCC--CCCceEEEEeC
Q 018231 244 SPF-EYADVVTTTTHKSLR--GPRGAMIFFRK 272 (359)
Q Consensus 244 ~~~-~~~D~v~~s~~K~l~--gp~gG~l~~~~ 272 (359)
.|. ...-+-++|++|+|+ |.+-|.++.++
T Consensus 230 lPgm~ertitvgS~gKtf~~TGWrlGW~igp~ 261 (420)
T KOG0257|consen 230 LPGMYERTITVGSFGKTFGVTGWRLGWAIGPK 261 (420)
T ss_pred CCchhheEEEeccccceeeeeeeeeeeeechH
Confidence 111 135688999999873 44449999954
No 39
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=99.91 E-value=4.7e-23 Score=196.62 Aligned_cols=253 Identities=13% Similarity=0.093 Sum_probs=174.2
Q ss_pred ceeeCCCCCCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-HHHH
Q 018231 49 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQ 127 (359)
Q Consensus 49 i~l~~~~~~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~ 127 (359)
..+.|++..+++.++++|.+.... + ...+.+ ..+.+++.+++++|++++. ..|+++++++ ++..
T Consensus 7 ~~~~pgP~~~~~~~~~a~~~~~~~-~-----------~~~~~~-~~~~~~~~l~~l~~~~~~~--~~i~~~~~gt~~l~~ 71 (368)
T PRK13479 7 LLLTPGPLTTSRTVREAMLRDWGS-W-----------DDDFNA-LTASVRAKLVAIATGEEGY--TCVPLQGSGTFSVEA 71 (368)
T ss_pred eeecCCCCCCCHHHHHHhCCCCCC-C-----------ChHHHH-HHHHHHHHHHHHhCCCCCc--eEEEEcCCcHHHHHH
Confidence 457889999999999998775421 1 112333 3445889999999996532 2476776666 8888
Q ss_pred HHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhh-CCcEEEEc-CCC
Q 018231 128 VYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF-RPKLIVAG-ASA 205 (359)
Q Consensus 128 ~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~-~~k~v~l~-~~n 205 (359)
++.+++.+||+|++.+..+.+.. . ...+...|.+++.++ .+ +++.+|++++++.+++. ++++++++ ++|
T Consensus 72 ~~~~l~~~~~~vlv~~~~~~~~~--~----~~~~~~~g~~~~~i~--~~-~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~ 142 (368)
T PRK13479 72 AIGSLVPRDGKVLVPDNGAYGAR--I----AQIAEYLGIAHVVLD--TG-EDEPPDAAEVEAALAADPRITHVALVHCET 142 (368)
T ss_pred HHHhccCCCCeEEEEeCCchHHH--H----HHHHHHcCCcEEEEE--CC-CCCCCCHHHHHHHHHhCCCCcEEEEEcccC
Confidence 99999999999998873322210 0 113344576676665 33 34678999999998751 45677776 666
Q ss_pred -CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEeCCCCcCCCCCc-eEEEEeCCcchhccCCcc
Q 018231 206 -YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEINKQGKE 283 (359)
Q Consensus 206 -~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~~~~g~~ 283 (359)
+|...|+++|.++|+++|+++++|++|++|..+.++..++ +|++++|+|||++||.| |+++++++....+.....
T Consensus 143 ~tG~~~~~~~i~~l~~~~~~~livDa~~~~g~~~~~~~~~~---~d~~v~s~~K~l~g~~G~G~l~~~~~~~~~~~~~~~ 219 (368)
T PRK13479 143 TTGILNPLDEIAAVAKRHGKRLIVDAMSSFGAIPIDIAELG---IDALISSANKCIEGVPGFGFVIARRSELEACKGNSR 219 (368)
T ss_pred ccccccCHHHHHHHHHHcCCEEEEEcccccCCccccccccC---ceEEEecCccccccCCCceEEEECHHHHHHhhcCCC
Confidence 8999999999999999999999999999998877766666 89999999999999999 999998854222211111
Q ss_pred hh-hhHHHhhccccC-CCCCCCCcHHHHHHHHHHHHHHhccccchhH
Q 018231 284 VF-YDYEEKINQAVF-PGLQGGPHNHTITGLAVALKQVCTLITFSHI 328 (359)
Q Consensus 284 ~~-~~~~~~~~~~~~-~~~~gt~~~~~i~al~~Al~~~~~~~~~~~~ 328 (359)
.+ .++......... .....|++.+.++++.+|++.+.+++...+.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~~~~~~~~~ 266 (368)
T PRK13479 220 SLSLDLYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELEEEGGVPAR 266 (368)
T ss_pred CeeecHHHHHhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHH
Confidence 11 111111111000 1112488999999999999988765444443
No 40
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=99.91 E-value=5.8e-23 Score=196.37 Aligned_cols=239 Identities=18% Similarity=0.191 Sum_probs=175.1
Q ss_pred cCceeeCCCC--CCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCC--CCCCCceeEEECCCh
Q 018231 47 KGLELIPSEN--FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRL--DPEKWGVNVQSLSGS 122 (359)
Q Consensus 47 ~~i~l~~~~~--~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~--~~~~~~~~v~~tsG~ 122 (359)
+.|+|..|++ ++|+.+++++.+.+.+.. . . |....++.++++++.+++.+.+|. ++++ +|++|+|+
T Consensus 29 ~vi~l~iG~Pd~~~p~~i~~a~~~a~~~~~----~--~-Y~~~~G~~~LReaia~~~~~~~~~~~~~~~---eiivt~Ga 98 (393)
T COG0436 29 DVIDLSIGEPDFPTPEHIIEAAIEALEEGG----T--H-YTPSAGIPELREAIAEKYKRRYGLDVDPEE---EIIVTAGA 98 (393)
T ss_pred CEEEeCCCCCCCCCCHHHHHHHHHHHhccc----C--C-CCCCCCCHHHHHHHHHHHHHHhCCCCCCCC---eEEEeCCH
Confidence 4799988776 689999999999887621 1 2 224577899999999999999985 4433 59999999
Q ss_pred H-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEE
Q 018231 123 P-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA 201 (359)
Q Consensus 123 ~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l 201 (359)
+ ++..++.++++|||+|++++ |.|+.|...+.+.|..+..+++.....+|.+|+++|++.+++ +||+|++
T Consensus 99 ~~al~~~~~a~~~pGDeVlip~--------P~Y~~y~~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~~-ktk~i~l 169 (393)
T COG0436 99 KEALFLAFLALLNPGDEVLIPD--------PGYPSYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAITP-KTKAIIL 169 (393)
T ss_pred HHHHHHHHHHhcCCCCEEEEeC--------CCCcCHHHHHHhcCCEEEEEeCCcCccCCcCCHHHHHhhcCc-cceEEEE
Confidence 9 88889999999999999999 667666767788898887776533213789999999999999 9999999
Q ss_pred c-CCC-CCCh---hhHHHHHHHHHHcCCEEEEeccccccccccCC-CCCCC--CC---ceEEEeCCCCcC--CCCCceEE
Q 018231 202 G-ASA-YARL---YDYERIRKVCNKQKAIMLADMAHISGLVAAGV-IPSPF--EY---ADVVTTTTHKSL--RGPRGAMI 268 (359)
Q Consensus 202 ~-~~n-~g~~---~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~-~~~~~--~~---~D~v~~s~~K~l--~gp~gG~l 268 (359)
+ |+| ||.+ ..+++|+++|++||+++|+|+++. +....+. ....+ .+ .-+.+.|.+|.+ .|.+-|++
T Consensus 170 n~P~NPTGav~~~~~l~~i~~~a~~~~i~ii~DEiY~-~l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~~~mtGwRvG~~ 248 (393)
T COG0436 170 NSPNNPTGAVYSKEELKAIVELAREHDIIIISDEIYE-ELVYDGAEHPSILELAGARDRTITINSFSKTYGMTGWRIGWV 248 (393)
T ss_pred eCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEehhhh-hcccCCCCcCCHhhcCCCcceEEEEecccccccccccceeEe
Confidence 8 888 9944 458899999999999999999964 3333321 22111 11 247788999976 46666999
Q ss_pred EEeCCcchhccCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHH
Q 018231 269 FFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQV 319 (359)
Q Consensus 269 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~ 319 (359)
+++++ ++.+.+.+. .......++.+.-.|..+||+.-
T Consensus 249 v~~~~-------------~l~~~~~~~-~~~~~~~~~~~~Q~aa~~aL~~~ 285 (393)
T COG0436 249 VGPPE-------------ELIAALRKL-KSYLTSCAPTPAQYAAIAALNGP 285 (393)
T ss_pred ecChH-------------HHHHHHHHH-HHhcccCCCHHHHHHHHHHhcCc
Confidence 99842 444433311 11122344555556666777643
No 41
>PRK02769 histidine decarboxylase; Provisional
Probab=99.91 E-value=1.8e-22 Score=192.07 Aligned_cols=256 Identities=17% Similarity=0.099 Sum_probs=173.8
Q ss_pred cHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHhh--cCC
Q 018231 59 SVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTAL--LKP 135 (359)
Q Consensus 59 ~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~al--~~~ 135 (359)
+....+.+.....+.+ |++...+..+ ....++++.+++++++++|+++++ ....+|||+| +|+.++.+. +.+
T Consensus 35 ~~~~~~~~~~~~~~n~--gnp~~~~~~g-~~~~~~e~~~~~~~a~l~g~~~~~--~~G~~TsGgTean~~a~~~ar~~~~ 109 (380)
T PRK02769 35 DYSALKRFFSFSINNC--GDPYSKSNYP-LNSFDFERDVMNFFAELFKIPFNE--SWGYITNGGTEGNLYGCYLARELFP 109 (380)
T ss_pred CHHHHHHHHHhhhccC--CCccccCCCC-CChHHHHHHHHHHHHHHhCCCCCC--CCEEEecChHHHHHHHHHHHHHhCC
Confidence 3455656666655544 5444322111 224567777999999999997644 1157899988 877555443 468
Q ss_pred CCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhh--CCcEEEEc-CCC-CCChhh
Q 018231 136 HDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF--RPKLIVAG-ASA-YARLYD 211 (359)
Q Consensus 136 Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~--~~k~v~l~-~~n-~g~~~~ 211 (359)
+++|++++.+|+++..+. ...|.+...++ .+ +++.+|+++|++.+++. +|.+|+++ .++ +|.+.|
T Consensus 110 ~~~ii~s~~~H~Sv~ka~--------~~lg~~~~~V~--~~-~~g~id~~~L~~~i~~~~~~t~lvv~t~gtt~tG~idp 178 (380)
T PRK02769 110 DGTLYYSKDTHYSVSKIA--------RLLRIKSRVIT--SL-PNGEIDYDDLISKIKENKNQPPIIFANIGTTMTGAIDN 178 (380)
T ss_pred CcEEEeCCCceehHHHHH--------HHcCCCCceec--cC-CCCcCcHHHHHHHHHhCCCCcEEEEEEeCCCCCcccCC
Confidence 899999999999876432 23344455565 34 46889999999999872 28888877 666 999999
Q ss_pred HHHHHHHHHHcC---CEEEEeccccccccccCCCC--CCCC-CceEEEeCCCCcCCCCCc-eEEEEeCCcchhccCCcch
Q 018231 212 YERIRKVCNKQK---AIMLADMAHISGLVAAGVIP--SPFE-YADVVTTTTHKSLRGPRG-AMIFFRKGVKEINKQGKEV 284 (359)
Q Consensus 212 l~~i~~la~~~~---~~vivD~a~~~g~~~~~~~~--~~~~-~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~~~~g~~~ 284 (359)
+++|+++|+++| +++++|+||+.+.+++.... ..+. ++|++++|+||++++|.| |+++++++........ .
T Consensus 179 i~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~~~~~~d~~~~vDsis~s~HK~~~~P~g~G~l~~r~~~~~~~~~~-~- 256 (380)
T PRK02769 179 IKEIQEILKKIGIDDYYIHADAALSGMILPFVNNPPPFSFADGIDSIAISGHKFIGSPMPCGIVLAKKKYVERISVD-V- 256 (380)
T ss_pred HHHHHHHHHHhCCCceEEEEEecccceeecccCccccCCccCCCCEEEECCcccCCCCCCcEEEEEehhhhhhcccC-c-
Confidence 999999999998 69999999999888642211 1111 599999999999988999 9999998532111100 0
Q ss_pred hhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhccccchhHhhhccccchhh
Q 018231 285 FYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAF 339 (359)
Q Consensus 285 ~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~~l~~~~~~ 339 (359)
+.+.. ......||.+...++++.++++.+..+ +++++.+.++..-..+
T Consensus 257 -----~yl~~-~d~t~~GSR~g~~~l~lw~aL~~lg~~-G~~~~~~~~~~la~~l 304 (380)
T PRK02769 257 -----DYIGS-RDQTISGSRNGHTALLLWAAIRSLGSK-GLRQRVQHCLDMAQYA 304 (380)
T ss_pred -----cccCC-CCCCccCCCCcHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHH
Confidence 00110 011234899999999999999987654 5666555554444433
No 42
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=99.90 E-value=1.2e-22 Score=193.36 Aligned_cols=197 Identities=17% Similarity=0.148 Sum_probs=145.4
Q ss_pred eCCCCCCcHHHHHHHHhhhhccCCCCCCCC-cccCC---chhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-HHH
Q 018231 52 IPSENFTSVSVMQAVGSVMTNKYSEGYPGA-RYYGG---NEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNF 126 (359)
Q Consensus 52 ~~~~~~~~~~v~~al~~~~~~~~~~g~~~~-~~~~~---~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~ 126 (359)
+..+.++.+.+++++.++..+ + +.+.. .+..+ .....+ +++.+++++|++ ++++++|++ ++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~----l~~~la~~~g~~------~i~~~~g~t~al~ 73 (361)
T cd06452 7 IQRGGRLTPEARKALIEWGDG-Y--SVCDFCRGRLDEIEKPPIKD----FHHDLAEFLGMD------EARVTPGAREGKF 73 (361)
T ss_pred hhcCCCCCHHHHHHHHHHhcc-c--CCccccccccccccCchHHH----HHHHHHHHcCCc------eEEEeCCHHHHHH
Confidence 345667889999999987643 3 22211 11111 122233 568899999983 388999999 888
Q ss_pred HHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhh------hCCcEEE
Q 018231 127 QVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL------FRPKLIV 200 (359)
Q Consensus 127 ~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~------~~~k~v~ 200 (359)
.++.++++|||+|+++.+.|.+.+. .+...|++++.++.+.+ .++.+|++++++.+++ .++++++
T Consensus 74 ~~l~~~~~~gd~Vl~~~~~~~~~~~--------~~~~~g~~~~~v~~~~~-~~~~~d~~~l~~~l~~~~~~~~~~~~lv~ 144 (361)
T cd06452 74 AVMHSLCEKGDWVVVDGLAHYTSYV--------AAERAGLNVREVPNTGH-PEYHITPEGYAEVIEEVKDEFGKPPALAL 144 (361)
T ss_pred HHHHHhcCCCCEEEEcCCcchHHHH--------HHHhcCCEEEEEecCCC-CCcccCHHHHHHHHHHHhhccCCCceEEE
Confidence 8899999999999998876665432 23455766766654322 2358999999998863 2688998
Q ss_pred Ec-CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEeCCCCcCCCCCc-eEEEEeCC
Q 018231 201 AG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKG 273 (359)
Q Consensus 201 l~-~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~ 273 (359)
++ ++| +|...|+++|.++|+++|+++|+|++|+.|..+......+ +|++++|+||++++|.+ |+++++++
T Consensus 145 l~~p~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~~~~~~~~~---~d~~~~s~~K~l~~~~~~G~l~~~~~ 217 (361)
T cd06452 145 LTHVDGNYGNLHDAKKIAKVCHEYGVPLLLNGAYTVGRMPVSGKELG---ADFIVGSGHKSMAASAPIGVLATTEE 217 (361)
T ss_pred EECCCCCCeeeccHHHHHHHHHHcCCeEEEECCcccCCcCCCHHHcC---CCEEEecCCccccCCCCeEEEEECHH
Confidence 88 766 8999999999999999999999999999887765544444 89999999999976655 99888873
No 43
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=99.89 E-value=1.1e-21 Score=186.03 Aligned_cols=250 Identities=16% Similarity=0.159 Sum_probs=166.9
Q ss_pred eeeCCCCCCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-HHHHH
Q 018231 50 ELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQV 128 (359)
Q Consensus 50 ~l~~~~~~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~ 128 (359)
.+.|++..+++.+++++.....+ + . ..+ .++.+.+++.+++++|++++. ..|++++|++ ++..+
T Consensus 2 ~~~p~p~~~~~~~~~~~~~~~~~-~------~-----~~~-~~~~~~~~~~la~~~~~~~~~--~~i~~~~~gt~~l~~~ 66 (355)
T TIGR03301 2 LLTPGPLSTSATVRDAMLVDWCH-W------D-----SEF-NDVTDQVRDRLLALAGGDDNH--TCVLLQGSGTFAVEAT 66 (355)
T ss_pred cCcCCCCCCCHHHHHHhhhhccC-C------C-----HHH-HHHHHHHHHHHHHHhcCCCCC--cEEEEeCCcHHHHHHH
Confidence 46788888999999999873322 1 0 012 233445889999999997642 2476666666 88888
Q ss_pred HHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhh-CCcEEEEc-CCC-
Q 018231 129 YTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF-RPKLIVAG-ASA- 205 (359)
Q Consensus 129 ~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~-~~k~v~l~-~~n- 205 (359)
+.+++++||+|++.+..+.+. .+ ...+...|.++..++ .+ +++.+|++++++.+++. ++++++++ ++|
T Consensus 67 ~~~~~~~~~~vi~~~~~~~~~---~~---~~~a~~~g~~~~~i~--~~-~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~ 137 (355)
T TIGR03301 67 IGSLVPRDGKLLVLINGAYGE---RL---AKICEYLGIPHTDLN--FS-EYEPPDLNRIEEALAADPDITHVATVHHETT 137 (355)
T ss_pred HHhccCCCCeEEEECCCchhh---HH---HHHHHHcCCceEEEe--cC-CCCCCCHHHHHHHHHhCCCceEEEEEecCCc
Confidence 899989999887765322111 01 112334566665554 44 45788999999998751 34455555 445
Q ss_pred CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEeCCCCcCCCCCc-eEEEEeCCcchhccCC-cc
Q 018231 206 YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEINKQG-KE 283 (359)
Q Consensus 206 ~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~~~~g-~~ 283 (359)
+|...|+++|.++|++||+++|+|++|++|..+.++...+ +|++++|+||+++|+.| |+++++++........ .+
T Consensus 138 ~G~~~~~~~i~~l~~~~~~~livD~~~s~g~~~~~~~~~~---~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~ 214 (355)
T TIGR03301 138 TGILNPLEAIAKVARSHGAVLIVDAMSSFGAIPIDIEELD---VDALIASANKCLEGVPGFGFVIARRDLLEASAGNARS 214 (355)
T ss_pred ccchhHHHHHHHHHHHcCCEEEEEeccccCCcccchhhcC---ccEEEecCCcccccCCceeEEEECHHHHHHhhCCCCC
Confidence 7899999999999999999999999999988776665555 89999999999988888 9999988542211110 01
Q ss_pred hhhhHHHhhccccC-CCCCCCCcHHHHHHHHHHHHHHhccccch
Q 018231 284 VFYDYEEKINQAVF-PGLQGGPHNHTITGLAVALKQVCTLITFS 326 (359)
Q Consensus 284 ~~~~~~~~~~~~~~-~~~~gt~~~~~i~al~~Al~~~~~~~~~~ 326 (359)
.+.++...+..... ....+|++...++|+.++++.+.++..+.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~ 258 (355)
T TIGR03301 215 LYLDLYDQWAYMEKTGKWRFTPPTHTVYAFAQALEELEAEGGVP 258 (355)
T ss_pred ceeeHHHHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHHcccHH
Confidence 00111111100000 11236889999999999999887654343
No 44
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=99.89 E-value=1e-21 Score=191.29 Aligned_cols=238 Identities=16% Similarity=0.165 Sum_probs=164.3
Q ss_pred hcCceeeCCCC---CCcH----HHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEE
Q 018231 46 WKGLELIPSEN---FTSV----SVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQS 118 (359)
Q Consensus 46 ~~~i~l~~~~~---~~~~----~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~ 118 (359)
.+.++|..++. +.++ .+.+++.+++.... ..|++..+..+++ +.++++++.+. +++
T Consensus 36 ~~~~~L~~g~p~~D~~tds~t~a~~~a~~~a~~~g~-------~~Y~~~~g~~~Lr----eaia~~~~~~~------vv~ 98 (460)
T PRK13238 36 YNPFLLKSEDVFIDLLTDSGTGAMSDRQWAAMMRGD-------EAYAGSRSYYRLE----DAVKDIFGYPY------TIP 98 (460)
T ss_pred CCEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHhCC-------cccCCCCCHHHHH----HHHHHHhCCCc------EEE
Confidence 36788887775 3332 46777777765421 2345556677766 67778888653 888
Q ss_pred CCChH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccC-----CCC--CCCCHHHHHHH
Q 018231 119 LSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLN-----EST--GYIDYDQLEKS 190 (359)
Q Consensus 119 tsG~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-----~~~--~~~d~e~l~~~ 190 (359)
|+|++ ++..++.++++||| |++++ |.|..+...+.+.|.+++.++++.. .+. +.+|+++|++.
T Consensus 99 t~ggt~A~~~~~~all~pGD-Vii~~--------p~~~~~~~~i~~~G~~~v~v~~~~~~~~~~~~~f~g~id~e~Le~~ 169 (460)
T PRK13238 99 THQGRAAEQILFPVLIKKGD-VVPSN--------YHFDTTRAHIELNGATAVDLVIDEALDTGSRHPFKGNFDLEKLEAL 169 (460)
T ss_pred CCCHHHHHHHHHHHhCCCCC-EEccC--------CcccchHHHHHHcCCEEEEEeccccccccccccccCCcCHHHHHHH
Confidence 88888 88888999999999 88776 3343444345667877766664321 012 34999999999
Q ss_pred hhh---hCCcEEEEc-CCC-CC-C---hhhHHHHHHHHHHcCCEEEEeccccccccccC------CCCCC--------CC
Q 018231 191 ATL---FRPKLIVAG-ASA-YA-R---LYDYERIRKVCNKQKAIMLADMAHISGLVAAG------VIPSP--------FE 247 (359)
Q Consensus 191 i~~---~~~k~v~l~-~~n-~g-~---~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~------~~~~~--------~~ 247 (359)
+++ .++++|+++ ++| +| . ..++++|.++|++||++||+|++|..+...+. ..... +.
T Consensus 170 i~~~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i~~~~~s 249 (460)
T PRK13238 170 IEEVGAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDKSIKEIAREMFS 249 (460)
T ss_pred HhhcCCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccCCCHHHHhhhhcc
Confidence 985 268999998 788 66 3 44578999999999999999999965422111 01111 12
Q ss_pred CceEEEeCCCCcCCCCCceEEEEeCCcchhccCCcchhhhHHHhhccccC--CC--CCCCCcHHHHHHHHHHHHHHhcc
Q 018231 248 YADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVF--PG--LQGGPHNHTITGLAVALKQVCTL 322 (359)
Q Consensus 248 ~~D~v~~s~~K~l~gp~gG~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~--~~gt~~~~~i~al~~Al~~~~~~ 322 (359)
.+|++++|++|.+.+|.||+++++++ ++.++++.... .+ .+|.++.....|+..+|++..++
T Consensus 250 ~~D~~~~Sg~K~g~~~~GG~i~~~d~-------------~l~~~~~~~~~~~~g~~t~~g~~~~~~~Ala~~l~e~~~~ 315 (460)
T PRK13238 250 YADGLTMSAKKDAMVNIGGLLCFRDE-------------DLFTECRTLCILYEGFPTYGGLAGRDMEALAVGLYEGMDE 315 (460)
T ss_pred cCcEEEEecccCCCCcceeEEEcChH-------------HHHHHhhhcccccCCcccccCcHHHHHHHHHhhHHHhhCh
Confidence 48999999999988999999999874 56665544321 23 23666777788998888776554
No 45
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=99.89 E-value=5.8e-22 Score=174.72 Aligned_cols=257 Identities=17% Similarity=0.157 Sum_probs=189.1
Q ss_pred ceeeCCCCCCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChHHHHHH
Q 018231 49 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQV 128 (359)
Q Consensus 49 i~l~~~~~~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~ 128 (359)
..|.||+..+|+.|++||......+. .++.. ++-+.+++-++..|....+. .-++.++|+.+...+
T Consensus 19 ~L~gPGPsnl~~~V~~A~~~~~lgh~-----------sPe~~-qIm~~v~egikyVFkT~n~~--tf~isgsGh~g~E~a 84 (385)
T KOG2862|consen 19 TLLGPGPSNLSGRVQEAMSRPSLGHM-----------SPEFV-QIMDEVLEGIKYVFKTANAQ--TFVISGSGHSGWEAA 84 (385)
T ss_pred eeecCCCcCCCHHHHHhhcCCccccC-----------CHHHH-HHHHHHHHHHHHHhccCCCc--eEEEecCCcchHHHH
Confidence 37889999999999999886544321 12333 33344778888888875543 246777888899989
Q ss_pred HHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc--CCCC
Q 018231 129 YTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG--ASAY 206 (359)
Q Consensus 129 ~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~--~~n~ 206 (359)
+..++.|||.|++.. .+.++... ....+..|++++.++ .+ .+....+|++.+++.++++++++++ .+.|
T Consensus 85 l~N~lePgd~vLv~~---~G~wg~ra---~D~~~r~ga~V~~v~--~~-~G~~~~le~i~~~lsqh~p~~vfv~hgdsST 155 (385)
T KOG2862|consen 85 LVNLLEPGDNVLVVS---TGTWGQRA---ADCARRYGAEVDVVE--AD-IGQAVPLEEITEKLSQHKPKAVFVTHGDSST 155 (385)
T ss_pred HHhhcCCCCeEEEEE---echHHHHH---HHHHHhhCceeeEEe--cC-cccCccHHHHHHHHHhcCCceEEEEecCccc
Confidence 999999999999876 22222221 123456688887774 33 5578899999999999899999997 5669
Q ss_pred CChhh-HHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEeCCCCcCCCCCc-eEEEEeCCcchhc----cC
Q 018231 207 ARLYD-YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEIN----KQ 280 (359)
Q Consensus 207 g~~~~-l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~~----~~ 280 (359)
|...| ++.+.++|++|+++++||.+.+.|..++.+++++ +|+..+.++|.+++|.| +.|.+++.....+ .+
T Consensus 156 gV~q~~~~~~g~lc~k~~~lllVD~VaSlggt~F~mDewg---VDvaytgSQKaL~aP~GLsiisfS~ka~~~~~~rK~~ 232 (385)
T KOG2862|consen 156 GVLQDLLAISGELCHKHEALLLVDTVASLGGTEFEMDEWG---VDVAYTGSQKALGAPAGLSIISFSDKALEAIRDRKTK 232 (385)
T ss_pred cccchHHHHHHHHhhcCCeEEEEechhhcCCccceehhhc---ccEEEecchhhcCCCCCcceeecCHHHHHHHhhccCC
Confidence 99998 6677899999999999999999999999999988 99999999999999999 8888877643222 11
Q ss_pred CcchhhhHHHhhcccc---CCCC-CCCCcHHHHHHHHHHHHHHhccccchhHhhh
Q 018231 281 GKEVFYDYEEKINQAV---FPGL-QGGPHNHTITGLAVALKQVCTLITFSHIHVF 331 (359)
Q Consensus 281 g~~~~~~~~~~~~~~~---~~~~-~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~ 331 (359)
....+++.....+..- -+.. ..||++..++++.+||+++.+++..+.|++.
T Consensus 233 ~~~~yFd~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~I~eeGL~~~~~rH 287 (385)
T KOG2862|consen 233 PVSFYFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALALIAEEGLENSWRRH 287 (385)
T ss_pred ceEEEEeHHhhcchhccCCcccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222234443333221 1222 3899999999999999999998655555444
No 46
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.89 E-value=7.5e-22 Score=184.25 Aligned_cols=187 Identities=18% Similarity=0.191 Sum_probs=151.3
Q ss_pred CCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhh-cCC
Q 018231 57 FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL-LKP 135 (359)
Q Consensus 57 ~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al-~~~ 135 (359)
....+.++++.+.+.+.+-. . .+...++| +++++++|++. .|.+.||++|+.+++.++ +.|
T Consensus 12 ~i~~~e~~~v~~vl~sg~i~--------~-G~~v~~FE----~~~ae~~G~k~-----ava~~sgT~AL~laL~al~ig~ 73 (374)
T COG0399 12 SIGEEELAAVQEVLKSGWLT--------G-GPFVRRFE----QAFAEYLGVKY-----AVAVSSGTAALHLALLALAIGP 73 (374)
T ss_pred CcchHHHHHHHHHHHcCCee--------c-ChHHHHHH----HHHHHHhCCCe-----EEEecChHHHHHHHHHhcCCCC
Confidence 35678888999988875411 1 14456666 78999999987 488888888888788877 899
Q ss_pred CCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCChhhHHHH
Q 018231 136 HDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERI 215 (359)
Q Consensus 136 Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~~~n~g~~~~l~~i 215 (359)
||+|+++++++.++.. .+...|++++ .+++|++++.+|++.||++|++ +||+|+. .+-+|...+++.|
T Consensus 74 GDeVI~ps~TfvATan--------~i~~~Ga~PV--FvDid~~T~nid~~~ie~aIt~-~tKAIip-Vhl~G~~~dm~~i 141 (374)
T COG0399 74 GDEVIVPSFTFVATAN--------AVLLVGAKPV--FVDIDPDTLNIDPDLIEAAITP-RTKAIIP-VHLAGQPCDMDAI 141 (374)
T ss_pred CCEEEecCCchHHHHH--------HHHHcCCeEE--EEecCCcccCCCHHHHHHHccc-CCeEEEE-ehhccCCCCHHHH
Confidence 9999999988877655 3445676664 4468878899999999999998 8999874 3448888899999
Q ss_pred HHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEeCCCCcCCCCCceEEEEeCC
Q 018231 216 RKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKG 273 (359)
Q Consensus 216 ~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~gG~l~~~~~ 273 (359)
.++|++||++||.|+||+.|....+.....++.+-+++|.++|.+....||+++++++
T Consensus 142 ~~la~~~~l~vIEDaAqa~Ga~y~gk~vGt~Gd~~~fSF~~~K~ittgEGGav~tnd~ 199 (374)
T COG0399 142 MALAKRHGLPVIEDAAQAHGATYKGKKVGSFGDIGAFSFHATKNLTTGEGGAVVTNDE 199 (374)
T ss_pred HHHHHHcCCeEEEEcchhccCeecCcccccccceEEEEecCCCCccccCceEEEeCCH
Confidence 9999999999999999999999887766666556677777889998778999999996
No 47
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=99.88 E-value=2.9e-21 Score=183.60 Aligned_cols=216 Identities=17% Similarity=0.133 Sum_probs=148.4
Q ss_pred CCCCCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHhh
Q 018231 54 SENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTAL 132 (359)
Q Consensus 54 ~~~~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~al 132 (359)
+-+++|++|++++.++..+ | + ...++.+++++++++++|++. +++++|++ ++.+++.++
T Consensus 21 g~s~~~~~v~~a~~~~~~~-~---------~----~~~~~~~~~~~~~a~~~g~~~------~~~~~g~t~al~~al~al 80 (363)
T TIGR01437 21 GVSTVSDEVADAQKRGAQN-Y---------F----EIKELVNKTGEYIANLLGVED------AVIVSSASAGIAQSVAAV 80 (363)
T ss_pred CCCCCCHHHHHHHHHHHhc-C---------C----CHHHHHHHHHHHHHHhhCCCe------EEEEcCHHHHHHHHHHHH
Confidence 4456899999999998654 3 0 124555567899999999863 77888888 888899999
Q ss_pred cCCCC---------------eeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCc
Q 018231 133 LKPHD---------------RIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPK 197 (359)
Q Consensus 133 ~~~Gd---------------~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k 197 (359)
+++|| +|+++.+ |...+.. .....+.+.|+.++.+ +. ++.+|++++++++++ +|+
T Consensus 81 ~~~Gd~~~~~~~~~s~~~~~eVi~~~~-~~~~~~~---~~~~~~~~~g~~~v~v--~~---~~~~d~~~le~ai~~-~t~ 150 (363)
T TIGR01437 81 ITRGNRYLVENLHDSKIEVNEVVLPKG-HNVDYGA---PVETMVRLGGGKVVEA--GY---ANECSAEQLEAAITE-KTA 150 (363)
T ss_pred hcCCCcchhhcccccccccceEEEECc-cchhcCC---chHHHHHhcCCeEEEE--cC---CCCCCHHHHHHhcCh-hce
Confidence 99999 6666542 1111110 0012334556555444 33 256899999999998 899
Q ss_pred EEE-Ec-CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEeCCCCcCCCCCceEEEEeCCc
Q 018231 198 LIV-AG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGV 274 (359)
Q Consensus 198 ~v~-l~-~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~gG~l~~~~~~ 274 (359)
+++ ++ ++| +|.+.|+++|.++|++||+++++|++|+.... ..... ++|++++|+||+|.||.+|+++.++
T Consensus 151 ai~~v~~~~~~~g~~~~~~~i~~~a~~~gi~vivD~a~~~~~~--~~~~~---g~D~~~~S~~K~l~gp~~G~l~~~~-- 223 (363)
T TIGR01437 151 AILYIKSHHCVQKSMLSVEDAAQVAQEHNLPLIVDAAAEEDLQ--KYYRL---GADLVIYSGAKAIEGPTSGLVLGKK-- 223 (363)
T ss_pred EEEEEecCCCCcCCcCCHHHHHHHHHHcCCeEEEECCCCCchH--HHHHc---CCCEEEEeCCcccCCCceEEEEEcH--
Confidence 766 44 567 78889999999999999999999999963210 00112 3899999999999999999988765
Q ss_pred chhccCCcchhhhHHHhhccccCC----CCCCCCcHHHHHHHHHHHHHHhc
Q 018231 275 KEINKQGKEVFYDYEEKINQAVFP----GLQGGPHNHTITGLAVALKQVCT 321 (359)
Q Consensus 275 ~~~~~~g~~~~~~~~~~~~~~~~~----~~~gt~~~~~i~al~~Al~~~~~ 321 (359)
++.+.+...... ...|+ ..++++.+|++++.+
T Consensus 224 ------------~~i~~~~~~~~~~~~~~~~~~---~~~~gl~aAl~~~~~ 259 (363)
T TIGR01437 224 ------------KYIEWVKLQSKGIGRAMKVGK---ENILGLTAALEQYLS 259 (363)
T ss_pred ------------HHHHHHHhccCCCcceeccCH---HHHHHHHHHHHHHHc
Confidence 333322111000 01244 347888889988875
No 48
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=99.88 E-value=1.7e-22 Score=186.82 Aligned_cols=201 Identities=21% Similarity=0.223 Sum_probs=144.1
Q ss_pred HHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEeccc
Q 018231 97 CQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL 175 (359)
Q Consensus 97 ~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 175 (359)
+++.+++++|++. .+++++|++ ++.+++.++++|||+|++..+.|.++.. .+...|+.++.++...
T Consensus 64 ~~~~~A~~~ga~~-----~~~~~~Gst~a~~~~l~al~~~gd~Vlv~~~~h~s~~~--------~~~~~g~~~~~v~~~~ 130 (294)
T cd00615 64 AQELAARAFGAKH-----TFFLVNGTSSSNKAVILAVCGPGDKILIDRNCHKSVIN--------GLVLSGAVPVYLKPER 130 (294)
T ss_pred HHHHHHHHhCCCC-----EEEEcCcHHHHHHHHHHHcCCCCCEEEEeCCchHHHHH--------HHHHCCCEEEEecCcc
Confidence 5588999999864 366689988 8888889999999999999988877644 2334566666665433
Q ss_pred CCC---CCCCCHHHHHHHhhh-hCCcEEEEcCCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCC-CCC-CC
Q 018231 176 NES---TGYIDYDQLEKSATL-FRPKLIVAGASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIP-SPF-EY 248 (359)
Q Consensus 176 ~~~---~~~~d~e~l~~~i~~-~~~k~v~l~~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~-~~~-~~ 248 (359)
+.+ .+.+|++++++.+++ .++++++++.+| +|...|+++|.++|+++|+++++|++|+......+..+ ... .+
T Consensus 131 ~~~~~~~~~i~~~~l~~~l~~~~~~k~v~l~~p~~~G~~~dl~~I~~~~~~~g~~livDeA~~~~~~~~~~~~~~~~~~~ 210 (294)
T cd00615 131 NPYYGIAGGIPPETFKKALIEHPDAKAAVITNPTYYGICYNLRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSAAMAG 210 (294)
T ss_pred CcccCcCCCCCHHHHHHHHHhCCCceEEEEECCCCCCEecCHHHHHHHHHhcCCeEEEECcchhhhccCcccCcchhhcC
Confidence 311 137899999999974 268888888335 89999999999999999999999999976432211111 111 15
Q ss_pred ceEEEeCCCCcCCCCCc-eEEEEeCCcchhccCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhcc
Q 018231 249 ADVVTTTTHKSLRGPRG-AMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTL 322 (359)
Q Consensus 249 ~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~~ 322 (359)
+|++++|+||+++|+.+ |++.++++.. + ..++.........++|++..++++.+|++++..+
T Consensus 211 ~div~~S~hK~l~g~~~~~~l~~~~~~~-----------~-~~~~~~~~~~~~ttsps~~~~asl~~a~~~~~~~ 273 (294)
T cd00615 211 ADIVVQSTHKTLPALTQGSMIHVKGDLV-----------N-PDRVNEALNLHQSTSPSYLILASLDVARAMMALE 273 (294)
T ss_pred CcEEEEchhcccchHhHHHHHHhCCCcC-----------C-HHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999988876 7777766410 1 1122211111234799999999999999988543
No 49
>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.
Probab=99.88 E-value=6.4e-22 Score=187.76 Aligned_cols=265 Identities=13% Similarity=0.113 Sum_probs=165.4
Q ss_pred ceeeCCCCCCcHHHHHHHHhhhhccCCCCCCCCcccC-C---chhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCC-hH
Q 018231 49 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYG-G---NEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSG-SP 123 (359)
Q Consensus 49 i~l~~~~~~~~~~v~~al~~~~~~~~~~g~~~~~~~~-~---~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG-~~ 123 (359)
++++|++.+.|+.|++++.+++.+ +. +++...+. + .+..+.+ +.+|+.+++++|++.++ +|++|+| +|
T Consensus 1 ~~~~pGp~~~p~~V~~a~~~~~~~-~~--~~~rg~~~~~~r~~~~~~~~-~~~r~~l~~l~~~~~~~---~vvf~~gs~T 73 (355)
T cd00611 1 INFSAGPAALPEEVLEQAQKELLD-FN--GLGMSVMEMSHRSKDFEAIV-NEAESDLRELLNIPDNY---KVLFLQGGAT 73 (355)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhh-cc--cCCccccccCCCCHHHHHHH-HHHHHHHHHHhCCCCCc---eEEEEcCCch
Confidence 468899999999999999998854 31 22211111 1 2223333 45899999999984333 5888877 66
Q ss_pred -HHHHHHHhhcC---CCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCC-HHHHHHHhhhhCCcE
Q 018231 124 -SNFQVYTALLK---PHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYID-YDQLEKSATLFRPKL 198 (359)
Q Consensus 124 -a~~~~~~al~~---~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d-~e~l~~~i~~~~~k~ 198 (359)
++.+++.++++ +||.|++- ++.......++..|.+++.++. +.+....+ ++..+..+++ ++++
T Consensus 74 ~a~~~~~~~l~~~~~~~~~i~~g---------~~~~~~~~~a~~~g~~~~~~~~--~~~g~~~~~~~~~~~~~~~-~~~l 141 (355)
T cd00611 74 GQFAAVPLNLLGDKGTADYVVTG---------AWSAKAAKEAKRYGGVVVIVAA--KEEGKYTKIPDVETWDLAP-DAAY 141 (355)
T ss_pred HHHHHHHHhcCCCCCeEEEEECC---------HHHHHHHHHHHhcCCCcEEEec--ccccCCCCCCCHhhcCCCC-CCCE
Confidence 88878889877 55555542 2221001112334666666653 21111113 2222233555 8999
Q ss_pred EEEc-CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEeCCCCcCCCCCc-eEEEEeCCcc
Q 018231 199 IVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVK 275 (359)
Q Consensus 199 v~l~-~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~ 275 (359)
|.++ .+| +|... . ++++.+|+++++|++|++|+.++++..+ |++++|+||++ ||+| |++++++++.
T Consensus 142 V~~~h~~t~tG~~~--~---~i~~~~g~~~~VDa~qs~g~~~idv~~~-----~~~~ss~~K~l-GP~G~g~l~~~~~~~ 210 (355)
T cd00611 142 VHYCSNETIHGVEF--D---EVPDTGGVPLVADMSSNILSRPIDVSKF-----GVIYAGAQKNL-GPAGVTVVIVRKDLL 210 (355)
T ss_pred EEEeCCcccccEEc--c---eecccCCCeEEEEccccccCCCCCHHHh-----CEEEeeccccc-CCCceEEEEECHHHH
Confidence 8887 555 78652 2 4556699999999999999999998764 45667799976 7999 9999998643
Q ss_pred hhccCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhccccchhHhhhccccchhhhhcccCC
Q 018231 276 EINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNS 346 (359)
Q Consensus 276 ~~~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 346 (359)
..........+++..... ..+ ..||||+++++++.+|++++.+++++++++++..+....+...+..+
T Consensus 211 ~~~~~~~~~~~~~~~~~~--~~~-~~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~~~~~l~~~l~~~l~~~ 278 (355)
T cd00611 211 GKARKITPSMLNYKTHAD--NNS-LYNTPPTFAIYMMGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTIDNS 278 (355)
T ss_pred hhcccCCCCcccHHHHHh--cCC-CCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 221111111111111111 111 25899999999999999999876467777766555555554444443
No 50
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=99.87 E-value=8.2e-21 Score=182.74 Aligned_cols=236 Identities=17% Similarity=0.195 Sum_probs=160.3
Q ss_pred hcCceeeCCCC---CCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCCh
Q 018231 46 WKGLELIPSEN---FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGS 122 (359)
Q Consensus 46 ~~~i~l~~~~~---~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~ 122 (359)
++.|++..++- ..+|++++++.+.+.. +..++++.++..+. ..+...+++.+++++|.+. .+++++|+
T Consensus 38 ~~~i~~~~~~~lg~~~~~~v~~~~~~~~~~-~~~~~~~s~~~~G~---~~~~~~le~~ia~~~g~~~-----~ii~~~~~ 108 (393)
T TIGR01822 38 REVLNFCANNYLGLSSHPDLIQAAKDALDE-HGFGMSSVRFICGT---QDIHKELEAKIAAFLGTED-----TILYASCF 108 (393)
T ss_pred ceEEEeeCCCccccCCCHHHHHHHHHHHHH-hCCCCCCcCcccCC---hHHHHHHHHHHHHHhCCCc-----EEEECchH
Confidence 34688877763 2588999999998876 32366666544442 2222235588999999853 36665555
Q ss_pred HHHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhh-----CCc
Q 018231 123 PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF-----RPK 197 (359)
Q Consensus 123 ~a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~-----~~k 197 (359)
.++..++.+++++||+|++.+++|++... .+.+.+... +.+ ..+|++++++.+++. +++
T Consensus 109 ~a~~~~~~~l~~~gd~vi~~~~~~~s~~~--------~~~~~~~~~--~~~------~~~d~~~l~~~i~~~~~~~~~~~ 172 (393)
T TIGR01822 109 DANGGLFETLLGAEDAIISDALNHASIID--------GVRLCKAKR--YRY------ANNDMADLEAQLKEARAAGARHR 172 (393)
T ss_pred HHHHHHHHHhCCCCCEEEEeccccHHHHH--------HHHhcCCce--EEe------CCCCHHHHHHHHHhhhhcCCCce
Confidence 58777888999999999999988876543 222333222 211 136899999988742 577
Q ss_pred EEEEc-CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCC----CCCC-CCceEEEeCCCCcCCCCCceEEEE
Q 018231 198 LIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVI----PSPF-EYADVVTTTTHKSLRGPRGAMIFF 270 (359)
Q Consensus 198 ~v~l~-~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~----~~~~-~~~D~v~~s~~K~l~gp~gG~l~~ 270 (359)
+|++. .+| +|.+.|+++|.++|++||+++|+|++|+.|....... ..+. .++|++++|+||+++|+++|+++.
T Consensus 173 ~v~~~~v~~~tG~~~~l~~i~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~di~~~s~sK~l~g~r~G~~~~ 252 (393)
T TIGR01822 173 LIATDGVFSMDGVIAPLDEICDLADKYDALVMVDECHATGFLGPTGRGSHELCGVMGRVDIITGTLGKALGGASGGFTTA 252 (393)
T ss_pred EEEEeCCccCCCCcCCHHHHHHHHHHcCCEEEEECCccccCcCCCCCchHHhcCCCCCCeEEEEEChHHhhCCCcEEEEe
Confidence 77776 555 8999999999999999999999999998776532110 0111 147999999999998888899888
Q ss_pred eCCcchhccCCcchhhhHHHhhccccCCCC-CCCCcHHHHHHHHHHHHHHh
Q 018231 271 RKGVKEINKQGKEVFYDYEEKINQAVFPGL-QGGPHNHTITGLAVALKQVC 320 (359)
Q Consensus 271 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~gt~~~~~i~al~~Al~~~~ 320 (359)
++ ++.+.+.....+.. .++++...++++.+|++.+.
T Consensus 253 ~~--------------~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~ 289 (393)
T TIGR01822 253 RK--------------EVVELLRQRSRPYLFSNSLPPAVVGASIKVLEMLE 289 (393)
T ss_pred CH--------------HHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHh
Confidence 76 44444433212222 25566666677778887764
No 51
>PLN03032 serine decarboxylase; Provisional
Probab=99.87 E-value=2.8e-20 Score=175.94 Aligned_cols=241 Identities=16% Similarity=0.108 Sum_probs=163.7
Q ss_pred CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHhhc--C
Q 018231 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALL--K 134 (359)
Q Consensus 58 ~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~al~--~ 134 (359)
....+++++.+.+.+.+ |+|...+..+ ....++++.+++++++++|++++++ .-+||||+| +|+.++.+.. .
T Consensus 35 ~~~~~~~~~~~~~~~~~--gnP~s~~~~g-~~a~~~e~~v~~~ia~llg~~~~~~--~G~fTsGGTEaNl~al~~ar~~~ 109 (374)
T PLN03032 35 FDYGELSQLMKYSINNL--GDPFIESNYG-VHSRQFEVGVLDWFARLWELEKDEY--WGYITTCGTEGNLHGILVGREVF 109 (374)
T ss_pred cChHHHHHHHHhcccCC--CCCcccCCCC-ccHHHHHHHHHHHHHHHhCCCCccC--CEEEeCchHHHHHHHHHHHHHhC
Confidence 44567888888877656 6665532222 3356788889999999999987640 148889988 8886665542 3
Q ss_pred CCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhh--CCcEEEEc-CCC-CCChh
Q 018231 135 PHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF--RPKLIVAG-ASA-YARLY 210 (359)
Q Consensus 135 ~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~--~~k~v~l~-~~n-~g~~~ 210 (359)
+++.|+++..+|.++... +.+.|..++.+| .+ +++.+|+++|++++.+. +|.+|+++ .++ +|.+.
T Consensus 110 ~~~~vi~s~~~H~Sv~ka--------a~~lg~~~~~V~--~d-~~g~id~~~L~~~i~~~~~~~~lvv~tagtt~tG~id 178 (374)
T PLN03032 110 PDGILYASRESHYSVFKA--------ARMYRMEAVKVP--TL-PSGEIDYDDLERALAKNRDKPAILNVNIGTTVKGAVD 178 (374)
T ss_pred CCcEEEeCCCceeHHHHH--------HHHcCCCCeEee--eC-CCCcCcHHHHHHHHHHcCCCCEEEEEEecCcCCccCC
Confidence 567899988888877542 334455555565 45 56899999999999763 36677666 555 99999
Q ss_pred hHHHHHHHHHHcC-----CEEEEeccccccccccCCCC--CCC-CCceEEEeCCCCcCCCCCc-eEEEEeCCcchhccCC
Q 018231 211 DYERIRKVCNKQK-----AIMLADMAHISGLVAAGVIP--SPF-EYADVVTTTTHKSLRGPRG-AMIFFRKGVKEINKQG 281 (359)
Q Consensus 211 ~l~~i~~la~~~~-----~~vivD~a~~~g~~~~~~~~--~~~-~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~~~~g 281 (359)
|+++|+++|+++| +++++|+|++.+.+++.... ..+ .++|.+++|+||+++.|.| |+++++++....+...
T Consensus 179 pi~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~~~~~~~~~~~vDSis~s~HK~~g~P~g~G~ll~r~~~~~~~~~~ 258 (374)
T PLN03032 179 DLDRILRILKELGYTEDRFYIHCDGALFGLMMPFVSRAPEVTFRKPIGSVSVSGHKFLGCPMPCGVALTRKKHVKALSQN 258 (374)
T ss_pred CHHHHHHHHHHhCCCCCCeeEEEEccchhhhhhccCCCcccCCCcCCcEEEECcccccCCCcCeEEEEEEchhhHhhccC
Confidence 9999999999996 58999999988888753211 111 2599999999998777999 9999998521100000
Q ss_pred cchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhcc
Q 018231 282 KEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTL 322 (359)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~~ 322 (359)
...+.. ......|+-+....+++-++|+.+-.+
T Consensus 259 -------~~Yl~~-~d~ti~gSR~g~~~l~~w~~l~~~G~~ 291 (374)
T PLN03032 259 -------VEYLNS-RDATIMGSRNGHAPLYLWYTLRRKGYR 291 (374)
T ss_pred -------CcccCC-CCCcccCCCchHHHHHHHHHHHHhCHH
Confidence 000100 011223776666666666777665543
No 52
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=99.87 E-value=4.2e-21 Score=183.25 Aligned_cols=203 Identities=18% Similarity=0.211 Sum_probs=142.2
Q ss_pred cCceeeC--CCCCCcHHHHHHHHhhhhccCCCCCCCCcccCCch---hHHHHHHHHHHHHHHHcCCCCCCCceeEEECCC
Q 018231 47 KGLELIP--SENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNE---YIDMAESLCQKRALEAFRLDPEKWGVNVQSLSG 121 (359)
Q Consensus 47 ~~i~l~~--~~~~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~---~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG 121 (359)
..|+|++ ..+.+...+.+++.++-. |+.+++...+.. ....+. ..++.+++++|++. +.+++|
T Consensus 7 ~~~~~~~~~~~g~~~~~~~~a~~~~~~-----~~~~~~~~~g~~~~~~~~~~~-~~~e~lA~~~g~~~------~~i~~g 74 (370)
T TIGR02539 7 GSINLNPLQRGGVLTEAARKALVEFGD-----GYSVCDFCGGRLDQITKPPIH-DFLEDLAEFLGMDE------ARVTHG 74 (370)
T ss_pred cccccChhhhCCCCcHHHHHHHHHHhh-----ccccccccccccccccchHHH-HHHHHHHHHhCCCc------eEEECC
Confidence 4577764 234567777777776533 222222211111 111222 24577999999975 455677
Q ss_pred hH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhh------h
Q 018231 122 SP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL------F 194 (359)
Q Consensus 122 ~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~------~ 194 (359)
++ ++..++.+++++||+|++..++|.+.+. .+...|++++.++...+ .++.+|+++|++.+++ .
T Consensus 75 ~~~a~~~~~~~l~~~gd~Vl~~~~~h~s~~~--------~~~~~g~~~~~~~~~~~-~~~~~d~~~l~~~l~~~~~~~~~ 145 (370)
T TIGR02539 75 AREGKFAVMHALCKEGDWVVLDGLAHYTSYV--------AAERAGLNVKEVPHTGH-PEYKVDPEGYGEVIEEVEDESGK 145 (370)
T ss_pred hHHHHHHHHHHhhCCCCEEEECCcccHHHHH--------HHHHcCCEEEEEecCCc-ccCCcCHHHHHHHHHHhhhccCC
Confidence 77 8888999999999999998877654431 34556777766653212 3578999999999863 2
Q ss_pred CCcEEEEc-CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEeCCCCcCCCCCc-eEEEEe
Q 018231 195 RPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFR 271 (359)
Q Consensus 195 ~~k~v~l~-~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~ 271 (359)
++++|+++ ++| +|...|+++|.++|+++|+++++|++|+.|..+.+..... +|+++.|+||+++++.+ |+++++
T Consensus 146 ~~~lv~~~~p~~~~G~~~~l~~i~~la~~~~~~livDea~~~g~~~~~~~~~~---~di~v~s~sK~~~~~g~~G~l~~~ 222 (370)
T TIGR02539 146 PPVLALLTHVDGEYGNLPDAGKVAKVCREKGVPLLLNCAYTVGRMPVSAKEIG---ADFIVGSGHKSMAASGPCGVLGMS 222 (370)
T ss_pred CcEEEEEECCCCCCccccCHHHHHHHHHHcCCeEEEECccccCCcCCCHHHcC---CCEEEeeCcccccCCCCEEEEEEC
Confidence 57888887 666 8999999999999999999999999999886554433333 89999999999975333 999998
Q ss_pred CC
Q 018231 272 KG 273 (359)
Q Consensus 272 ~~ 273 (359)
++
T Consensus 223 ~~ 224 (370)
T TIGR02539 223 EE 224 (370)
T ss_pred HH
Confidence 73
No 53
>PRK03080 phosphoserine aminotransferase; Provisional
Probab=99.87 E-value=1.8e-21 Score=186.10 Aligned_cols=249 Identities=10% Similarity=0.048 Sum_probs=164.6
Q ss_pred CceeeCCCCCCcHH-HHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECC-ChH-H
Q 018231 48 GLELIPSENFTSVS-VMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLS-GSP-S 124 (359)
Q Consensus 48 ~i~l~~~~~~~~~~-v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~ts-G~~-a 124 (359)
-++|++++..+++. |++++.+.+.... . .+.++.+.+ +.+++.+++++|++.+. +|++++ ++| +
T Consensus 13 ~~~f~~Gp~~~~~~~v~~a~~~~~~~~~-----h----r~~~f~~~~-~~~r~~l~~l~~~~~~~---~v~~~~gs~T~~ 79 (378)
T PRK03080 13 DPRFSSGPCKKRPGWQLEALADALLGRS-----H----RQKPVKALL-KRVIEGTRELLSLPEGY---EVGIVPGSDTGA 79 (378)
T ss_pred CCCcCCCCcCCChHHHHHHHHhhhcccC-----c----CCHHHHHHH-HHHHHHHHHHhCCCCCc---eEEEECCchHHH
Confidence 46788999988888 9999987644310 0 112344444 45899999999985432 477664 555 8
Q ss_pred HHHHHHhhcCC-CCeeeecCCCCCcccCccccccccceeeeee-eeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc
Q 018231 125 NFQVYTALLKP-HDRIMALDLPHGGHLSHGYQTDTKKISAVSI-FFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG 202 (359)
Q Consensus 125 ~~~~~~al~~~-Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~ 202 (359)
+.+++.+++++ ++.|++ ..+|++.+ ... ..+..|. +++.++ .+ ++..+|+++++ . +++|.++
T Consensus 80 ~~~~~~~l~~~~~~~vi~-~g~f~~~~---~~~---~~~~~g~~~v~~~~--~~-~g~~~d~~~i~----~--~~~V~~~ 143 (378)
T PRK03080 80 WEMALWSLLGARRVDHLA-WESFGSKW---ATD---VVKQLKLEDPRVLE--AD-YGSLPDLSAVD----F--DRDVVFT 143 (378)
T ss_pred HHHHHHhcCCCCcceEEE-eCHHHHHH---HHH---HHhhcCCCCceEec--cC-CCCCCCHhhcC----C--CCCEEEE
Confidence 88788888875 455554 44555422 110 0122354 555564 33 44577877643 2 5566666
Q ss_pred -CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEeCCCCcCCCCCc-eEEEEeCCcchh--
Q 018231 203 -ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEI-- 277 (359)
Q Consensus 203 -~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~-- 277 (359)
.++ +|...|+++|++ +++|+++++|++|++|..++++.. +|++++|+||||++|+| |+++++++....
T Consensus 144 h~~t~tG~~~pi~~I~~--~~~g~~~vVDa~qs~G~~pidv~~-----iD~~~~s~~K~l~~P~G~g~l~v~~~~~~~~~ 216 (378)
T PRK03080 144 WNGTTTGVRVPVARWIG--ADREGLTICDATSAAFALPLDWSK-----LDVYTFSWQKVLGGEGGHGMAILSPRAVERLE 216 (378)
T ss_pred ecCCccceeccchhhcc--ccCCCeEEEecccccccCCCCHHH-----CcEEEEehhhhCCCCCceEEEEECHHHHHhhh
Confidence 444 899999999998 889999999999999999998864 79999999999999999 999999865322
Q ss_pred --ccCCcc-hhhhHHH---hhccccCCCCCCCCcHHHHHHHHHHHHHHhccccchhHhhhc
Q 018231 278 --NKQGKE-VFYDYEE---KINQAVFPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFS 332 (359)
Q Consensus 278 --~~~g~~-~~~~~~~---~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~~ 332 (359)
..++.. ..+++.. ........+..+||++..+.++.+|++++.+.+++++++.+.
T Consensus 217 p~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gG~e~i~~r~ 277 (378)
T PRK03080 217 SYTPARPIPKFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWANSIGGLDALIART 277 (378)
T ss_pred cccCCCCCchhheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 122211 1111111 111111123347899999999999999998764566554443
No 54
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=99.87 E-value=1.2e-20 Score=180.06 Aligned_cols=236 Identities=16% Similarity=0.108 Sum_probs=160.8
Q ss_pred eeCCCCCCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-HHHHHH
Q 018231 51 LIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVY 129 (359)
Q Consensus 51 l~~~~~~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~ 129 (359)
|.....++.|.+++++.+.+...+ +.+.. +. ...++++.+++++++++|++++. +++++|++ ++..++
T Consensus 25 ~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~--~~---~~~~~~~~~~~~la~~~g~~~~~----~~~~~ggt~a~~~a~ 93 (371)
T PRK13520 25 LSSMCTEPHPIARKAHEMFLETNL--GDPGL--FP---GTAKLEEEAVEMLGELLHLPDAY----GYITSGGTEANIQAV 93 (371)
T ss_pred eeeeecCchHHHHHHHHHHHhcCC--CCccc--Cc---cHHHHHHHHHHHHHHHhCCCCCC----eEEecCcHHHHHHHH
Confidence 666566778888999988876533 32221 22 23344456889999999987643 77788777 887676
Q ss_pred HhhcC----CCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc-CC
Q 018231 130 TALLK----PHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-AS 204 (359)
Q Consensus 130 ~al~~----~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~-~~ 204 (359)
.++.+ +||+|++.+..|.++.. .+...|.+++.++ .+ +++.+|+++|++.+++ +++.|+++ ++
T Consensus 94 ~~~~~~~~~~~~~vl~~~~~h~s~~~--------~~~~~g~~~~~v~--~~-~~~~~d~~~l~~~i~~-~~~~vi~~~~~ 161 (371)
T PRK13520 94 RAARNLAKAEKPNIVVPESAHFSFDK--------AADMLGVELRRAP--LD-DDYRVDVKAVEDLIDD-NTIGIVGIAGT 161 (371)
T ss_pred HHHHhhccCCCceEEecCcchHHHHH--------HHHHcCceEEEec--CC-CCCcCCHHHHHHHHhh-CCEEEEEEcCC
Confidence 66543 68999999877655321 3344566666665 34 4578899999999987 77766655 54
Q ss_pred C-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCC--CC--CCCceEEEeCCCCcCCCCCc-eEEEEeCCcchhc
Q 018231 205 A-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIP--SP--FEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEIN 278 (359)
Q Consensus 205 n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~--~~--~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~~ 278 (359)
| +|.+.|+++|.++|+++|+++++|++|+.+..+..... .. ..++|++++|+|||+.+|.+ |+++++++
T Consensus 162 ~~tG~~~~l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~~vd~~~~s~~K~~~a~~~~G~~~~~~~----- 236 (371)
T PRK13520 162 TELGQVDPIPELSKIALENGIFLHVDAAFGGFVIPFLDDPPNFDFSLPGVDSITIDPHKMGLAPIPAGGILFRDE----- 236 (371)
T ss_pred cCCcccCCHHHHHHHHHHcCCCEEEEecchhHHHHhhcCCCCccccCCCCceEEECCccccCccCCceEEEEcCH-----
Confidence 5 89999999999999999999999999987765432211 11 12589999999998765544 77776653
Q ss_pred cCCcchhhhHHHhhccc--cCC-----CCCCCCcHHHHHHHHHHHHHHhcc
Q 018231 279 KQGKEVFYDYEEKINQA--VFP-----GLQGGPHNHTITGLAVALKQVCTL 322 (359)
Q Consensus 279 ~~g~~~~~~~~~~~~~~--~~~-----~~~gt~~~~~i~al~~Al~~~~~~ 322 (359)
++.+.+... ... ...||++...++++.++++.+.++
T Consensus 237 --------~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~al~~l~~~ 279 (371)
T PRK13520 237 --------SYLDALAVDTPYLTSKKQATLTGTRSGAGVAATYAVMKYLGRE 279 (371)
T ss_pred --------HHHHhhcccCccccCCCCcceEeeccChHHHHHHHHHhhhcHh
Confidence 222222110 000 012677777888999999887654
No 55
>PRK06108 aspartate aminotransferase; Provisional
Probab=99.87 E-value=2.9e-20 Score=178.19 Aligned_cols=224 Identities=15% Similarity=0.103 Sum_probs=156.5
Q ss_pred ccChHHHHHHHHHHHHhhcCceeeCCCC--CCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcC
Q 018231 29 VVDPEIADIIEHEKARQWKGLELIPSEN--FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFR 106 (359)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~i~l~~~~~--~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g 106 (359)
...+..+..+........+.++|..+++ ++++.+.+++.+.+.+.. ..|+...+..++++++.+++.+.+|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~-------~~Y~~~~G~~~lr~~la~~~~~~~~ 79 (382)
T PRK06108 7 ALPESGIREVANAGRGREGVLPLWFGESDLPTPDFIRDAAAAALADGE-------TFYTHNLGIPELREALARYVSRLHG 79 (382)
T ss_pred hCCchHHHHHHHHHhccCCeEEecCCCCCCCCCHHHHHHHHHHHhcCC-------CCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 3444555555554333346789988776 457889999888776521 1234445567888888899988888
Q ss_pred --CCCCCCceeEEECCChH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCC
Q 018231 107 --LDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYID 183 (359)
Q Consensus 107 --~~~~~~~~~v~~tsG~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d 183 (359)
++++ +|++|+|++ ++..++.+++++||+|+++++.|+.+. ..+...|.+++.+++..+..++.+|
T Consensus 80 ~~~~~~----~i~~t~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~--------~~~~~~g~~~~~v~~~~~~~~~~~d 147 (382)
T PRK06108 80 VATPPE----RIAVTSSGVQALMLAAQALVGPGDEVVAVTPLWPNLV--------AAPKILGARVVCVPLDFGGGGWTLD 147 (382)
T ss_pred CCcCcc----eEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCccchH--------HHHHHCCCEEEEeeCCCCCCCccCC
Confidence 5554 599999999 888788889999999999996665432 2344557666666643322356799
Q ss_pred HHHHHHHhhhhCCcEEEEc-CCC-CCChh---hHHHHHHHHHHcCCEEEEeccccccccc-cCCCC--CCC---CCceEE
Q 018231 184 YDQLEKSATLFRPKLIVAG-ASA-YARLY---DYERIRKVCNKQKAIMLADMAHISGLVA-AGVIP--SPF---EYADVV 252 (359)
Q Consensus 184 ~e~l~~~i~~~~~k~v~l~-~~n-~g~~~---~l~~i~~la~~~~~~vivD~a~~~g~~~-~~~~~--~~~---~~~D~v 252 (359)
++++++.+++ ++++++++ ++| ||... ++++|.++|+++|+++|+|++++..... ..... ..+ ....++
T Consensus 148 ~~~l~~~~~~-~~~~i~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~ 226 (382)
T PRK06108 148 LDRLLAAITP-RTRALFINSPNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRIIF 226 (382)
T ss_pred HHHHHHhcCc-cceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCCCcCCEEE
Confidence 9999999876 89998887 888 88554 5788999999999999999998654332 11100 011 124588
Q ss_pred EeCCCCcCC--CCCceEEEEeC
Q 018231 253 TTTTHKSLR--GPRGAMIFFRK 272 (359)
Q Consensus 253 ~~s~~K~l~--gp~gG~l~~~~ 272 (359)
+.|++|.++ |.+-|++++++
T Consensus 227 ~~S~SK~~g~~G~RiG~~~~~~ 248 (382)
T PRK06108 227 VNSFSKNWAMTGWRLGWLVAPP 248 (382)
T ss_pred EeechhhccCcccceeeeeCCH
Confidence 999999874 33339999976
No 56
>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional
Probab=99.86 E-value=4e-21 Score=182.20 Aligned_cols=270 Identities=11% Similarity=0.104 Sum_probs=172.8
Q ss_pred CceeeCCCCCCcHHHHHHHHhhhhccCCC--CCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH--
Q 018231 48 GLELIPSENFTSVSVMQAVGSVMTNKYSE--GYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-- 123 (359)
Q Consensus 48 ~i~l~~~~~~~~~~v~~al~~~~~~~~~~--g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-- 123 (359)
.+.++||+..+|+.|++|+.+.+.+..+. |.....+ ...++. ++-+.+++.+++++|++.+. .|++++|++
T Consensus 4 ~~l~~pGP~~~p~~V~~a~~~~~~~~~~~~~g~~~~~h-r~~~f~-~~~~~~~~~l~~l~~~~~~~---~v~~~~gsgt~ 78 (360)
T PRK05355 4 VYNFSAGPAMLPEEVLEQAQQELLDWNGSGMSVMEISH-RSKEFE-AVAEEAEADLRELLNIPDNY---KVLFLQGGASL 78 (360)
T ss_pred eeeccCCCCCCCHHHHHHHHHHhhccccCCccccccCC-CCHHHH-HHHHHHHHHHHHHhCCCCCc---EEEEEcCCchH
Confidence 45788999999999999999987541111 1111111 122333 44445889999999984332 366665544
Q ss_pred HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHH-HhhhhCCcEEEEc
Q 018231 124 SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEK-SATLFRPKLIVAG 202 (359)
Q Consensus 124 a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~-~i~~~~~k~v~l~ 202 (359)
++.+++..++.+||++++.. .+.++..+ ...++..|.. ..+. .+...+..+..++++ .+++ ++++|.++
T Consensus 79 ~~Ea~~~nl~~~g~~~l~i~---~G~fg~r~---~~~a~~~g~~-~~~~--~~~~~g~~~~~~~~~~~l~~-~~~~V~~t 148 (360)
T PRK05355 79 QFAMVPMNLLGGGKKADYVD---TGSWSKKA---IKEAKKYGEV-NVAA--SSEDDGFTYIPPLDEWQLSD-DAAYVHYT 148 (360)
T ss_pred HHHHHHHhcCCCCCeEEEEE---CCHHHHHH---HHHHHHhCCc-eEEe--cccccCCCCCCChhhccCCC-CCCEEEEc
Confidence 89999999999999998876 22222211 1123334532 3333 221134445445544 6766 78999887
Q ss_pred --CCCCCChh-hHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEeCCCCcCCCCCc-eEEEEeCCcchhc
Q 018231 203 --ASAYARLY-DYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEIN 278 (359)
Q Consensus 203 --~~n~g~~~-~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~~ 278 (359)
.++||... |+++| +|+++++|++|++|..++++.. .|++++|+||+| ||+| |++++++++....
T Consensus 149 h~eTstGv~~~~i~~i------~g~l~vVDavss~g~~~idv~~-----~d~~~~ssqK~l-gP~Glg~l~~s~~~l~~~ 216 (360)
T PRK05355 149 SNETIDGTEFHELPDT------GDVPLVADMSSDILSRPIDVSK-----FGLIYAGAQKNI-GPAGLTIVIVREDLLGRA 216 (360)
T ss_pred cCCCcceEecCccccc------CCCcEEEEcCccccCccCCHHH-----ccEEEEeccccc-cCCceEEEEECHHHHhhc
Confidence 44488887 66665 8999999999999999998875 469999999988 5999 9999999753221
Q ss_pred cCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhccccchhHhhhccccchhhhhcccCCC
Q 018231 279 KQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSE 347 (359)
Q Consensus 279 ~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 347 (359)
.......+++....... ...||||+..++|+.+||+++.++++++++.++.......+..++..+.
T Consensus 217 ~~~~~~~~~~~~~~~~~---~~~~Tp~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~~l~~~l~~~~ 282 (360)
T PRK05355 217 LPSIPSMLDYKTHADND---SMYNTPPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAALLYDAIDSSD 282 (360)
T ss_pred ccCCChHHHHHHHHhcC---CccCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 11011122333222111 2348999999999999999998763566666554444444444444433
No 57
>PRK08361 aspartate aminotransferase; Provisional
Probab=99.85 E-value=4.2e-20 Score=177.74 Aligned_cols=225 Identities=14% Similarity=0.141 Sum_probs=155.0
Q ss_pred ccccccChHHHHHHHHHHHHhhcCceeeCCCCC--CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHH
Q 018231 25 APLEVVDPEIADIIEHEKARQWKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRAL 102 (359)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~--~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a 102 (359)
+++..+....+..+.+..+...+.|+|..+++. +++.+.+++.+.+.... ..|....+..++++++.+++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~-------~~Y~~~~g~~~lr~~ia~~~~ 84 (391)
T PRK08361 12 GRINLIQRSKIRELFERASKMENVISLGIGEPDFDTPKNIKEAAKRALDEGW-------THYTPNAGIPELREAIAEYYK 84 (391)
T ss_pred HHHHhCCccHHHHHHHHHHhhcCeEEcCCCCCCCCCCHHHHHHHHHHHhcCC-------CCCCCCCCcHHHHHHHHHHHH
Confidence 334444455555554433333456899877764 46788888888765422 113333556778877778877
Q ss_pred HHcCC--CCCCCceeEEECCChH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCC-C
Q 018231 103 EAFRL--DPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNE-S 178 (359)
Q Consensus 103 ~~~g~--~~~~~~~~v~~tsG~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~-~ 178 (359)
+.+|. +++ +|++|+|++ ++..++.+++++||+|++++++|.+.. ..+...|.++..++ +++ .
T Consensus 85 ~~~g~~~~~~----~i~~t~G~~~al~~~~~~l~~~g~~Vlv~~p~y~~~~--------~~~~~~g~~~~~v~--~~~~~ 150 (391)
T PRK08361 85 KFYGVDVDVD----NVIVTAGAYEATYLAFESLLEEGDEVIIPDPAFVCYV--------EDAKIAEAKPIRIP--LREEN 150 (391)
T ss_pred HHhCCCCCcc----cEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCCcccH--------HHHHHcCCEEEEEe--cCCcc
Confidence 77664 444 599999999 888788899999999999996665442 23445566665565 442 3
Q ss_pred CCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhh---HHHHHHHHHHcCCEEEEeccccccccccCCCCCC---C-CCc
Q 018231 179 TGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP---F-EYA 249 (359)
Q Consensus 179 ~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~---l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~---~-~~~ 249 (359)
++.+|++++++.+++ ++++++++ |+| ||...+ +++|.++|+++++++|+|++++....... ...+ + ...
T Consensus 151 ~~~~d~~~l~~~i~~-~~~~v~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~ 228 (391)
T PRK08361 151 EFQPDPDELLELITK-RTRMIVINYPNNPTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGA-KHYPMIKYAPDN 228 (391)
T ss_pred CCCCCHHHHHHhccc-ccEEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCC-CCCCHhhcCCCC
Confidence 568999999999987 89998887 888 897777 78889999999999999999854332211 1011 1 125
Q ss_pred eEEEeCCCCcCCCCC--ceEEEEeC
Q 018231 250 DVVTTTTHKSLRGPR--GAMIFFRK 272 (359)
Q Consensus 250 D~v~~s~~K~l~gp~--gG~l~~~~ 272 (359)
++++.|++|.++.|. .|++++++
T Consensus 229 ~i~~~s~SK~~~~~GlRiG~~~~~~ 253 (391)
T PRK08361 229 TILANSFSKTFAMTGWRLGFVIAPE 253 (391)
T ss_pred EEEEecCchhcCCcHhhhhhhccCH
Confidence 789999999875342 39999876
No 58
>PRK08960 hypothetical protein; Provisional
Probab=99.85 E-value=1.3e-19 Score=174.05 Aligned_cols=228 Identities=11% Similarity=0.041 Sum_probs=155.7
Q ss_pred ccccccccChHHHHHHHHHHHHh----hcCceeeCCCCC--CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHH
Q 018231 23 LNAPLEVVDPEIADIIEHEKARQ----WKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESL 96 (359)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~----~~~i~l~~~~~~--~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~ 96 (359)
++++++.+.++.+..+.+...+. .+.++|..+++. +|+.+.+++.+.+.... .+| ....+..+++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~-~~Y------~~~~g~~~lr~~ 77 (387)
T PRK08960 5 YSRRSRDIEPFHVMALLARANELEAAGHDVIHLEIGEPDFTTAEPIVAAGQAALAAGH-TRY------TAARGLPALREA 77 (387)
T ss_pred hhhHHHhCCchHHHHHHHHHHHHHhcCCCeEEeCCCCCCCCCCHHHHHHHHHHHhcCC-Ccc------CCCCCCHHHHHH
Confidence 34455566677677665544332 356888877764 68899999998876421 122 223456777777
Q ss_pred HHHHHHHHcCC--CCCCCceeEEECCChH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEec
Q 018231 97 CQKRALEAFRL--DPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPY 173 (359)
Q Consensus 97 ~~~~~a~~~g~--~~~~~~~~v~~tsG~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~ 173 (359)
+.+++.+.+|. +++ +|++|+|++ ++..++.++++|||+|++++++|+++.. .+...|.+++.+++
T Consensus 78 ia~~~~~~~g~~~~~~----~i~it~G~~~al~~~~~~~~~~gd~vlv~~p~y~~~~~--------~~~~~g~~~~~v~~ 145 (387)
T PRK08960 78 IAGFYAQRYGVDVDPE----RILVTPGGSGALLLASSLLVDPGKHWLLADPGYPCNRH--------FLRLVEGAAQLVPV 145 (387)
T ss_pred HHHHHHHHhCCCCChh----hEEEccCcHHHHHHHHHHhcCCCCEEEEcCCCCcchHH--------HHHhcCCeEEEEec
Confidence 77777776664 454 599999999 8877888899999999999977765543 33345666666664
Q ss_pred ccCCCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhh---HHHHHHHHHHcCCEEEEeccccccccccCCCCC--CC
Q 018231 174 RLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPS--PF 246 (359)
Q Consensus 174 ~~~~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~---l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~--~~ 246 (359)
+.+ .++.+|++++++.+++ ++++++++ |+| ||...+ +++|+++|++||+++|+|+++.. ....+.... ..
T Consensus 146 ~~~-~~~~~d~~~l~~~~~~-~~~~i~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~-~~~~~~~~~~~~~ 222 (387)
T PRK08960 146 GPD-SRYQLTPALVERHWNA-DTVGALVASPANPTGTLLSRDELAALSQALRARGGHLVVDEIYHG-LTYGVDAASVLEV 222 (387)
T ss_pred Ccc-cCCCCCHHHHHHHhCc-cceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccc-cccCCCCCChhhc
Confidence 322 3568999999998887 78887777 888 896665 55777789999999999999743 221111100 11
Q ss_pred CCceEEEeCCCCcCC--CCCceEEEEeC
Q 018231 247 EYADVVTTTTHKSLR--GPRGAMIFFRK 272 (359)
Q Consensus 247 ~~~D~v~~s~~K~l~--gp~gG~l~~~~ 272 (359)
..--+++.|.+|.++ |.+.|++++++
T Consensus 223 ~~~vi~~~S~SK~~g~~GlRiG~~~~~~ 250 (387)
T PRK08960 223 DDDAFVLNSFSKYFGMTGWRLGWLVAPP 250 (387)
T ss_pred cCCEEEEeecccccCCcccEEEEEEcCH
Confidence 113478899999874 33349999877
No 59
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=99.85 E-value=1.9e-19 Score=172.03 Aligned_cols=235 Identities=16% Similarity=0.145 Sum_probs=153.9
Q ss_pred eeCCCCCCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-HHHHHH
Q 018231 51 LIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVY 129 (359)
Q Consensus 51 l~~~~~~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~ 129 (359)
++.+.+ +.+.+.+++..++.... +.+. .+++ ...+++.+++++++++|++++. +++++|++ ++..++
T Consensus 26 ~~~~~~-~~~~~~~a~~~~~~~~~--~~~~--~~~~---~~~~~~~~~~~la~~~g~~~~~----~~~~~g~~~~~~~~~ 93 (373)
T TIGR03812 26 GSMCTN-PHPIAVKAYDMFIETNL--GDPG--LFPG---TKKIEEEVVGSLGNLLHLPDAY----GYIVSGGTEANIQAV 93 (373)
T ss_pred EEEeCC-chHHHHHHHHHHhhcCC--CCcc--cCcc---HHHHHHHHHHHHHHHhCCCCCC----eEEeccHHHHHHHHH
Confidence 333443 34456777777655422 3332 1222 2344556889999999997643 77777777 776566
Q ss_pred Hhhc------CCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCc-EEEEc
Q 018231 130 TALL------KPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPK-LIVAG 202 (359)
Q Consensus 130 ~al~------~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k-~v~l~ 202 (359)
.++. ++||+|++++++|.++. ..+...|.+++.++ .+ +++.+|++++++.+++ ++. +++++
T Consensus 94 ~~~~~~~~~~~~g~~vl~~~~~h~~~~--------~~~~~~G~~~~~v~--~~-~~~~~d~~~l~~~l~~-~~~~vv~~~ 161 (373)
T TIGR03812 94 RAAKNLAREEKRTPNIIVPESAHFSFE--------KAAEMLGLELRYAP--LD-EDYTVDVKDVEDLIDD-NTIGIVGIA 161 (373)
T ss_pred HHHHHHHhccCCCcEEEECCcchHHHH--------HHHHHcCCeEEEEe--eC-CCCCcCHHHHHHHHhh-CcEEEEEEC
Confidence 5543 47899999986665432 23445677776665 44 4678999999999987 664 45555
Q ss_pred CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccC---CC--CCC--CCCceEEEeCCCCcCCCCCc-eEEEEeCC
Q 018231 203 ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAG---VI--PSP--FEYADVVTTTTHKSLRGPRG-AMIFFRKG 273 (359)
Q Consensus 203 ~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~---~~--~~~--~~~~D~v~~s~~K~l~gp~g-G~l~~~~~ 273 (359)
++| +|...|+++|.++|+++|+++++|++|+.+..+.. .. ... ..++|++++|+|||+.+|.+ |++++.++
T Consensus 162 ~~~~tG~~~~~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d~~~~~~d~~~~s~~K~~~~~~~~G~~~~~~~ 241 (373)
T TIGR03812 162 GTTELGQIDDIEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFDFSLPGVQSITIDPHKMGLSPIPAGGILFRSK 241 (373)
T ss_pred CCCCCCccCCHHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCccccCCCCCEEEECccccCCCcCCceEEEEeCH
Confidence 556 89999999999999999999999999986654322 11 111 12589999999997665544 55554442
Q ss_pred cchhccCCcchhhhHHHhhccc--cCCC-----CCCCCcHHHHHHHHHHHHHHhcc
Q 018231 274 VKEINKQGKEVFYDYEEKINQA--VFPG-----LQGGPHNHTITGLAVALKQVCTL 322 (359)
Q Consensus 274 ~~~~~~~g~~~~~~~~~~~~~~--~~~~-----~~gt~~~~~i~al~~Al~~~~~~ 322 (359)
++.+.+... .... ..||++...++++.++++.+.++
T Consensus 242 -------------~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~~l~~l~~~ 284 (373)
T TIGR03812 242 -------------SYLKYLSVDAPYLTVKKQATITGTRSGASAAATYAVIKYLGRE 284 (373)
T ss_pred -------------HHHhhhcccCcccCCCCCcceEeechhHHHHHHHHHHHHhCHH
Confidence 333322110 0001 12688888899999999887643
No 60
>PLN00175 aminotransferase family protein; Provisional
Probab=99.85 E-value=1.2e-19 Score=175.54 Aligned_cols=228 Identities=15% Similarity=0.142 Sum_probs=162.6
Q ss_pred ccccccccChHHHHHHHHHHHHhhcCceeeCCCC--CCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHH
Q 018231 23 LNAPLEVVDPEIADIIEHEKARQWKGLELIPSEN--FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKR 100 (359)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~--~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~ 100 (359)
+++++..+.++.+..+.+.. ...+.|+|..|.+ ++++.+++++.+.+.+.. ..|+...+..++++++.++
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~-~~~~~i~l~~G~P~~~~~~~~~~~~~~~~~~~~-------~~Y~~~~G~~~Lr~aia~~ 103 (413)
T PLN00175 32 VAKRLEKFKTTIFTQMSSLA-IKHGAINLGQGFPNFDGPDFVKEAAIQAIRDGK-------NQYARGFGVPELNSAIAER 103 (413)
T ss_pred hhHHhhcCCCCHHHHHHHHh-hcCCeEecCCCCCCCCCCHHHHHHHHHHHhcCC-------CCcCCCCCCHHHHHHHHHH
Confidence 45566677777787776653 3346788886654 457888999888776421 2234446677888888888
Q ss_pred HHHHcCC--CCCCCceeEEECCChH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCC
Q 018231 101 ALEAFRL--DPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNE 177 (359)
Q Consensus 101 ~a~~~g~--~~~~~~~~v~~tsG~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~ 177 (359)
+.+.+|. +++. +|++|+|++ ++..++.++++|||+|+++++.|+ .+...+...|.+++.++ +++
T Consensus 104 ~~~~~g~~~~~~~---~I~vt~G~~~al~~~~~~l~~~gd~Vlv~~P~y~--------~~~~~~~~~g~~~~~v~--~~~ 170 (413)
T PLN00175 104 FKKDTGLVVDPEK---EVTVTSGCTEAIAATILGLINPGDEVILFAPFYD--------SYEATLSMAGAKIKTVT--LRP 170 (413)
T ss_pred HHHHhCCCCCCCC---CEEEeCCHHHHHHHHHHHhCCCCCEEEEeCCCch--------hHHHHHHHcCCEEEEEE--CCc
Confidence 8888786 4432 499999999 887788899999999999995444 33334556677776665 443
Q ss_pred CCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChh---hHHHHHHHHHHcCCEEEEeccccccccccC---CCCCC-CCC
Q 018231 178 STGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLY---DYERIRKVCNKQKAIMLADMAHISGLVAAG---VIPSP-FEY 248 (359)
Q Consensus 178 ~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~---~l~~i~~la~~~~~~vivD~a~~~g~~~~~---~~~~~-~~~ 248 (359)
+++.+|+++|++.+.+ ++|+|+++ |+| ||... ++++|.++|++|++++|+|+++........ ..... ...
T Consensus 171 ~~~~~~~~~l~~~~~~-~~k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~s~~~~~~~~~ 249 (413)
T PLN00175 171 PDFAVPEDELKAAFTS-KTRAILINTPHNPTGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEGDHISMASLPGMYE 249 (413)
T ss_pred ccCCCCHHHHHHhcCc-CceEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEecccCccccCCcccChhhCCCCcC
Confidence 4588999999999987 89999988 888 88654 577889999999999999999754332211 11110 012
Q ss_pred ceEEEeCCCCcCC--CCCceEEEEeC
Q 018231 249 ADVVTTTTHKSLR--GPRGAMIFFRK 272 (359)
Q Consensus 249 ~D~v~~s~~K~l~--gp~gG~l~~~~ 272 (359)
..+++.|++|.|+ |.+-|++++++
T Consensus 250 ~vi~i~SfSK~~~~~G~RiG~~v~~~ 275 (413)
T PLN00175 250 RTVTMNSLGKTFSLTGWKIGWAIAPP 275 (413)
T ss_pred cEEEEecchhhccCcchheeeeEeCH
Confidence 4588899999874 33349999877
No 61
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=99.84 E-value=2.6e-19 Score=172.09 Aligned_cols=229 Identities=16% Similarity=0.178 Sum_probs=152.6
Q ss_pred ccccccChHHHHHHHHHHHH----hhcCceeeCCCCC--CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHH
Q 018231 25 APLEVVDPEIADIIEHEKAR----QWKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQ 98 (359)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~----~~~~i~l~~~~~~--~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~ 98 (359)
+++..+.+..+..+.+.... ..+.++|..++++ +++.+.+++.+.+......+ |+...+..++++++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------Y~~~~G~~~lr~aia 78 (388)
T PRK07366 5 QRLQPLQSNVFADMDRAKAQARAAGKELIDLSLGSSDLPAPAHALEAIAQSLHDPSTHG------YLLFHGTLDFREAAA 78 (388)
T ss_pred hhhhcCCccHHHHHHHHHHHHHhcCCCeEEeCCCCCCCCCCHHHHHHHHHHHhCcccCC------CCCCCCCHHHHHHHH
Confidence 34444555555544433221 2356889877763 57888999888765321112 333355677887788
Q ss_pred HHHHHHcCC--CCCCCceeEEECCChH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEeccc
Q 018231 99 KRALEAFRL--DPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL 175 (359)
Q Consensus 99 ~~~a~~~g~--~~~~~~~~v~~tsG~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 175 (359)
+++.+.+|. ++++ +|++|+|++ ++..++.++++|||+|++.+|.|+ .+...+...|.++..+++..
T Consensus 79 ~~~~~~~g~~~~~~~---~I~it~Gs~~al~~~~~~l~~~gd~Vlv~~P~y~--------~~~~~~~~~g~~~~~v~~~~ 147 (388)
T PRK07366 79 QWYEQRFGLAVDPET---EVLPLIGSQEGTAHLPLAVLNPGDFALLLDPGYP--------SHAGGVYLAGGQIYPMPLRA 147 (388)
T ss_pred HHHHHhhCCcCCCcC---eEEECCCcHHHHHHHHHHhCCCCCEEEEcCCCCc--------chHHHHHhcCCEEEEEECCC
Confidence 888777774 5542 499999999 888788899999999999995444 44445566787776665422
Q ss_pred CCCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhh---HHHHHHHHHHcCCEEEEeccccccccccCC-CC--CCCC
Q 018231 176 NESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGV-IP--SPFE 247 (359)
Q Consensus 176 ~~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~---l~~i~~la~~~~~~vivD~a~~~g~~~~~~-~~--~~~~ 247 (359)
+ +++.+|++++++.+.+ ++|+++++ |+| ||...+ +++|.++|++||++||+|+++.--...... .. ..+.
T Consensus 148 ~-~~~~~d~~~l~~~~~~-~~k~i~l~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~ 225 (388)
T PRK07366 148 E-NDFLPVFADIPTEVLA-QARLMVLSYPHNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQAD 225 (388)
T ss_pred c-cCCCCCHHHHHHhhcc-cceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCC
Confidence 2 3567899999888776 79999998 888 896554 667788999999999999997532221110 00 0010
Q ss_pred ---CceEEEeCCCCcCC--CCCceEEEEeC
Q 018231 248 ---YADVVTTTTHKSLR--GPRGAMIFFRK 272 (359)
Q Consensus 248 ---~~D~v~~s~~K~l~--gp~gG~l~~~~ 272 (359)
..-+++.|++|.++ |.+.|+++.++
T Consensus 226 ~~~~~vi~~~SfSK~~g~~GlRiG~~v~~~ 255 (388)
T PRK07366 226 PEKSVSIEFFTLSKSYNMGGFRIGFAIGNA 255 (388)
T ss_pred CCcccEEEEeecccccCCcchhheehcCCH
Confidence 12367899999873 44449999876
No 62
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=99.84 E-value=3.3e-19 Score=171.80 Aligned_cols=225 Identities=13% Similarity=0.089 Sum_probs=154.0
Q ss_pred ccccChHHHHHHHHHHHHh-----hcCceeeCCCCC--CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHH
Q 018231 27 LEVVDPEIADIIEHEKARQ-----WKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQK 99 (359)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~-----~~~i~l~~~~~~--~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~ 99 (359)
+..+.++.+..+.+..... .+.|+|..++++ +++.+.+++.+.+... ..|+...+..++++++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~~--------~~Y~~~~G~~~lr~~ia~ 76 (396)
T PRK09147 5 LDRLQPYPFEKLRALFAGVTPPADLPPISLSIGEPKHPTPAFIKDALAANLDGL--------ASYPTTAGLPALREAIAA 76 (396)
T ss_pred hhcCCcchHHHHHHHHHhhhhccCCCeEecCCCCCCCCCCHHHHHHHHHHhhhh--------cCCCCCCCCHHHHHHHHH
Confidence 3445555555555543322 367888877763 5788888887765431 123333556778888888
Q ss_pred HHHHHcCC---CCCCCceeEEECCChH-HHHHHHHhhcCC---CCeeeecCCCCCcccCccccccccceeeeeeeeEEEe
Q 018231 100 RALEAFRL---DPEKWGVNVQSLSGSP-SNFQVYTALLKP---HDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMP 172 (359)
Q Consensus 100 ~~a~~~g~---~~~~~~~~v~~tsG~~-a~~~~~~al~~~---Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~ 172 (359)
++.+.+|. ++++ +|++|+|++ ++..++.++++| ||.|++++ |.|..+...+...|.++..+|
T Consensus 77 ~~~~~~g~~~~~~~~---~i~it~G~~~al~~~~~~l~~~~~~gd~vlv~~--------P~y~~~~~~~~~~g~~~~~vp 145 (396)
T PRK09147 77 WLERRYGLPALDPAT---QVLPVNGSREALFAFAQTVIDRDGPGPLVVCPN--------PFYQIYEGAALLAGAEPYFLN 145 (396)
T ss_pred HHHHHhCCCcCCccc---eEEECCChHHHHHHHHHHHcCCCCCCCEEEEcC--------CCccchHHHHHhcCCEEEEec
Confidence 88888784 4432 599999999 888789999999 99999998 455444445556777776665
Q ss_pred cccCCCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChh---hHHHHHHHHHHcCCEEEEeccccccccccCCCC----
Q 018231 173 YRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLY---DYERIRKVCNKQKAIMLADMAHISGLVAAGVIP---- 243 (359)
Q Consensus 173 ~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~---~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~---- 243 (359)
+..+ +++.+|++++++.+.+ ++|+++++ |+| ||... .+++|.++|++|+++||+|+++..-........
T Consensus 146 ~~~~-~~~~~d~~~l~~~~~~-~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~ 223 (396)
T PRK09147 146 CDPA-NNFAPDFDAVPAEVWA-RTQLLFVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLL 223 (396)
T ss_pred cCcc-ccCccCHHHHHHHHhh-ccEEEEEcCCCCCcCccCCHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhh
Confidence 4322 3578999999988876 89999998 888 99655 577888899999999999999754322110000
Q ss_pred -----CCCC--CceEEEeCCCCcC--CCCCceEEEEeC
Q 018231 244 -----SPFE--YADVVTTTTHKSL--RGPRGAMIFFRK 272 (359)
Q Consensus 244 -----~~~~--~~D~v~~s~~K~l--~gp~gG~l~~~~ 272 (359)
.... .--+++.|++|.+ .|.+-|+++.++
T Consensus 224 ~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRiG~~~~~~ 261 (396)
T PRK09147 224 EAAAELGRDDFKRLVVFHSLSKRSNVPGLRSGFVAGDA 261 (396)
T ss_pred hhccccCccccccEEEEeccccccCCccceeeeecCCH
Confidence 0000 1238999999965 344449998876
No 63
>PRK08912 hypothetical protein; Provisional
Probab=99.84 E-value=2.7e-19 Score=171.86 Aligned_cols=229 Identities=12% Similarity=0.102 Sum_probs=157.5
Q ss_pred hccccccccChHHHHHHHHHHHHhhcCceeeCCCC--CCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHH
Q 018231 22 QLNAPLEVVDPEIADIIEHEKARQWKGLELIPSEN--FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQK 99 (359)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~--~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~ 99 (359)
|+++++....+..+..+.+... ....++|..+.+ +.|+.+.+++.+.+.... ..|+...+..++++++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~-~~~~i~l~~g~p~~~~p~~~~~~~~~~~~~~~-------~~Y~~~~G~~~lr~~ia~ 74 (387)
T PRK08912 3 MGNPVFADLPTTIFEVMSQLAR-EHGAINLGQGFPDDPGPEDVRRAAADALLDGS-------NQYPPMMGLPELRQAVAA 74 (387)
T ss_pred hhhHHHhhCCCCHHHHHHHHHh-hCCeEEccCCCCCCCCCHHHHHHHHHHHhcCC-------CCCCCCCCcHHHHHHHHH
Confidence 4455555666666666666443 245688876543 346778888777654321 123444566788888888
Q ss_pred HHHHHcCC--CCCCCceeEEECCChH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccC
Q 018231 100 RALEAFRL--DPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLN 176 (359)
Q Consensus 100 ~~a~~~g~--~~~~~~~~v~~tsG~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 176 (359)
++.+.+|. +++. +|++|+|++ ++..++.+++++||+|+++++.|+.+ ...+...|.+++.++ .+
T Consensus 75 ~~~~~~g~~~~~~~---~i~~t~G~~~al~~~~~~~~~~gd~Vlv~~p~y~~~--------~~~~~~~g~~~~~~~--~~ 141 (387)
T PRK08912 75 HYARFQGLDLDPET---EVMVTSGATEALAAALLALVEPGDEVVLFQPLYDAY--------LPLIRRAGGVPRLVR--LE 141 (387)
T ss_pred HHHHHhCCCCCCcc---cEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhh--------HHHHHHcCCEEEEEe--cC
Confidence 88887775 4431 499999999 88778889999999999999655433 334455676665565 44
Q ss_pred CCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhh---HHHHHHHHHHcCCEEEEecccccccccc----CCCCC-CC
Q 018231 177 ESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAA----GVIPS-PF 246 (359)
Q Consensus 177 ~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~---l~~i~~la~~~~~~vivD~a~~~g~~~~----~~~~~-~~ 246 (359)
++++.+|++++++.+.+ ++++++++ |+| ||...+ +++|.++|++|++++|+|+++....... ..... +.
T Consensus 142 ~~~~~~~~~~l~~~~~~-~~~~v~l~~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~ 220 (387)
T PRK08912 142 PPHWRLPRAALAAAFSP-RTKAVLLNNPLNPAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGM 220 (387)
T ss_pred cccCcCCHHHHHHHhCc-cceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCc
Confidence 34678999999999887 89999888 888 896654 7778999999999999999985322211 00000 11
Q ss_pred CCceEEEeCCCCcCC--CCCceEEEEeC
Q 018231 247 EYADVVTTTTHKSLR--GPRGAMIFFRK 272 (359)
Q Consensus 247 ~~~D~v~~s~~K~l~--gp~gG~l~~~~ 272 (359)
.+.++++.|.+|.++ |.+-|++++++
T Consensus 221 ~~~~i~~~S~SK~~g~~GlRiG~~~~~~ 248 (387)
T PRK08912 221 RERTVKIGSAGKIFSLTGWKVGFVCAAP 248 (387)
T ss_pred cCceEEEeechhhccCcCceeEEEecCH
Confidence 135799999999773 22239999876
No 64
>PRK06348 aspartate aminotransferase; Provisional
Probab=99.84 E-value=3.3e-19 Score=171.16 Aligned_cols=229 Identities=14% Similarity=0.084 Sum_probs=154.2
Q ss_pred ccccccccChHHHHHHHHHHHHhhcCceeeCCCCC--CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHH
Q 018231 23 LNAPLEVVDPEIADIIEHEKARQWKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKR 100 (359)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~--~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~ 100 (359)
+++++.......+..+.+......+.++|..+++. +++.+.+++........ ..|+...+..+++++++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~-------~~Y~~~~G~~~lr~~ia~~ 78 (384)
T PRK06348 6 LAKKYQQMEVNIMAEIATLAKKFPDIIDLSLGDPDLITDESIINAAFEDAKKGH-------TRYTDSGGDVELIEEIIKY 78 (384)
T ss_pred HHHHHhcCCccHHHHHHHHHHhcCCcEEcCCCCCCCCCCHHHHHHHHHHHhcCC-------CCCCCCCCcHHHHHHHHHH
Confidence 44555566666666666544333467888876654 45667665555443311 1234445566788788888
Q ss_pred HHHHcCC--CCCCCceeEEECCChH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCC
Q 018231 101 ALEAFRL--DPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNE 177 (359)
Q Consensus 101 ~a~~~g~--~~~~~~~~v~~tsG~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~ 177 (359)
+.+.+|. +++ +|++|+|++ ++..++.++++|||+|+++++.|.. +...+...|..+..+++. +.
T Consensus 79 ~~~~~~~~~~~~----~i~it~G~~~al~~~~~~~~~~gd~vlv~~p~y~~--------~~~~~~~~g~~~~~~~~~-~~ 145 (384)
T PRK06348 79 YSKNYDLSFKRN----EIMATVGACHGMYLALQSILDPGDEVIIHEPYFTP--------YKDQIEMVGGKPIILETY-EE 145 (384)
T ss_pred HHHHhCCCCChh----hEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCCcc--------hHHHHHHcCCEEEEecCC-cC
Confidence 8777665 444 599999999 8887899999999999999955543 333444556555444421 22
Q ss_pred CCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChh---hHHHHHHHHHHcCCEEEEeccccccccccCCCC-CCC---CC
Q 018231 178 STGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLY---DYERIRKVCNKQKAIMLADMAHISGLVAAGVIP-SPF---EY 248 (359)
Q Consensus 178 ~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~---~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~-~~~---~~ 248 (359)
+++.+|+++|++.+++ ++++++++ |+| ||... .+++|.++|+++++++|+|+++..-........ ..+ ..
T Consensus 146 ~~~~~d~~~l~~~~~~-~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~ 224 (384)
T PRK06348 146 DGFQINVKKLEALITS-KTKAIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYEDFVPMATLAGMPE 224 (384)
T ss_pred cCCcCCHHHHHHhhCc-CccEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCCCccchhhcCCCcC
Confidence 4568999999998876 89999887 888 88655 477888899999999999999753222111000 001 12
Q ss_pred ceEEEeCCCCcCC--CCCceEEEEeC
Q 018231 249 ADVVTTTTHKSLR--GPRGAMIFFRK 272 (359)
Q Consensus 249 ~D~v~~s~~K~l~--gp~gG~l~~~~ 272 (359)
..+++.|++|.++ |.+.|++++++
T Consensus 225 ~vi~~~SfSK~~~l~GlRiG~~v~~~ 250 (384)
T PRK06348 225 RTITFGSFSKDFAMTGWRIGYVIAPD 250 (384)
T ss_pred cEEEEecchhccCCccccceeeecCH
Confidence 4588899999874 44459999876
No 65
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=99.84 E-value=1.6e-19 Score=169.94 Aligned_cols=250 Identities=20% Similarity=0.215 Sum_probs=180.5
Q ss_pred cCceeeCCCCC---CcHHHHHHHHhhhhccCCCCCCCCcc-cCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCCh
Q 018231 47 KGLELIPSENF---TSVSVMQAVGSVMTNKYSEGYPGARY-YGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGS 122 (359)
Q Consensus 47 ~~i~l~~~~~~---~~~~v~~al~~~~~~~~~~g~~~~~~-~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~ 122 (359)
..+++.+++=. -.|.+++++.+.+.. |..|..+.+. ++..+...+|| +.+++++|.+. .++++||-
T Consensus 40 ~~~nf~SNdYLGLa~~~~~~~a~~~~~~~-~g~g~~gsR~i~G~~~~h~~LE----~~lA~f~g~e~-----al~f~SGy 109 (388)
T COG0156 40 KVLNFCSNDYLGLASHPELIEAAKAAIRR-YGVGAGGSRLISGTSDLHVELE----EELADFLGAEA-----ALLFSSGF 109 (388)
T ss_pred eeEeeeccCcccccCCHHHHHHHHHHHHH-hCCCCCCcCcccCCcHHHHHHH----HHHHHHhCCCc-----EEEEcccc
Confidence 35677655532 378899999999887 4445555553 44444456666 88999999976 59999999
Q ss_pred HHHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhh--C---Cc
Q 018231 123 PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF--R---PK 197 (359)
Q Consensus 123 ~a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~--~---~k 197 (359)
.+|..++.+++++||.|+.....|.+.+. ++.+.+++.. .+..+ |+++||+.+.+. . .+
T Consensus 110 ~AN~~~i~~l~~~~dli~~D~lnHASiid--------G~rls~a~~~--~f~Hn------D~~~Le~~l~~~~~~~~~~~ 173 (388)
T COG0156 110 VANLGLLSALLKKGDLIFSDELNHASIID--------GIRLSRAEVR--RFKHN------DLDHLEALLEEARENGARRK 173 (388)
T ss_pred hhHHHHHHHhcCCCcEEEEechhhhhHHH--------HHHhCCCcEE--EecCC------CHHHHHHHHHhhhccCCCce
Confidence 99999999999999999999888887654 5666776553 33344 899999999762 1 35
Q ss_pred EEEEc--CCCCCChhhHHHHHHHHHHcCCEEEEeccccccccccC---C-CCCCCC--CceEEEeCCCCcCCCCCceEEE
Q 018231 198 LIVAG--ASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAG---V-IPSPFE--YADVVTTTTHKSLRGPRGAMIF 269 (359)
Q Consensus 198 ~v~l~--~~n~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~---~-~~~~~~--~~D~v~~s~~K~l~gp~gG~l~ 269 (359)
+|+.. .|+.|.+.|+++|.+++++|++++++|+||++|++... . ...+.. .+|+++++.+|+|+ ..||++.
T Consensus 174 ~IvtegVfSMdGdiApL~~l~~L~~ky~a~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~vdi~~gTlsKAlG-s~Gg~v~ 252 (388)
T COG0156 174 LIVTEGVFSMDGDIAPLPELVELAEKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALG-SSGGYIA 252 (388)
T ss_pred EEEEeccccCCCCcCCHHHHHHHHHHhCcEEEEEccccccccCCCCccHHHHhCCCCccceEEEEEchhhhc-ccCceee
Confidence 55554 78899999999999999999999999999999988631 1 122222 36999999999985 5679998
Q ss_pred EeCCcchhccCCcchhhhHHHhhccccCCCCC-CCCcHHHHHHHHHHHHHHhccccchhHhhhccccchhhhh
Q 018231 270 FRKGVKEINKQGKEVFYDYEEKINQAVFPGLQ-GGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVS 341 (359)
Q Consensus 270 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-gt~~~~~i~al~~Al~~~~~~~~~~~~~~~~l~~~~~~~~ 341 (359)
.+. .+.+.+.....+..+ .+.+....+|..++++.+.+. .+++..|+.+.+++.
T Consensus 253 g~~--------------~~~d~L~~~ar~~ifStalpP~~aaa~~~al~~l~~~----~~~r~~L~~~~~~~~ 307 (388)
T COG0156 253 GSA--------------ALIDYLRNRARPFIFSTALPPAVAAAALAALRILEEG----PERRERLQELAAFFR 307 (388)
T ss_pred CcH--------------HHHHHHHHhCCceeccCCCCHHHHHHHHHHHHHHHhC----HHHHHHHHHHHHHHH
Confidence 887 555655444444455 445556667777889887743 255555556655553
No 66
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=99.84 E-value=3.6e-20 Score=176.32 Aligned_cols=183 Identities=21% Similarity=0.213 Sum_probs=129.7
Q ss_pred HHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhh-cCCCCe
Q 018231 60 VSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL-LKPHDR 138 (359)
Q Consensus 60 ~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al-~~~Gd~ 138 (359)
++.++++.+.+.+.+. ........++| +.+++++|.+. .+.++||++|+.+++.++ +++||+
T Consensus 5 ~e~~~~v~~~l~s~~~--------~~~g~~~~~fE----~~~a~~~g~~~-----~~~~~sgt~Al~~al~~l~~~~gde 67 (363)
T PF01041_consen 5 EEEIDAVLEVLRSGWL--------STYGPYVEEFE----KEFAEYFGVKY-----AVAVSSGTSALHLALRALGLGPGDE 67 (363)
T ss_dssp HHHHHHHHHHHHHTCC--------SSSSHHHHHHH----HHHHHHHTSSE-----EEEESSHHHHHHHHHHHTTGGTTSE
T ss_pred HHHHHHHHHHHHhCCc--------cCCCHHHHHHH----HHHHHHhCCCe-----EEEeCChhHHHHHHHHhcCCCcCce
Confidence 4566777777776330 01024566666 78899999875 477777877888888888 899999
Q ss_pred eeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCChhhHHHHHHH
Q 018231 139 IMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKV 218 (359)
Q Consensus 139 Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~~~n~g~~~~l~~i~~l 218 (359)
|+++.+++.+...+ +...|.++ +.++++++++.+|++++++++++ +||+|++. |.+|...++++|.++
T Consensus 68 Vi~p~~t~~~~~~a--------i~~~G~~p--v~~Di~~~~~~id~~~~~~~i~~-~t~ai~~~-h~~G~~~d~~~i~~~ 135 (363)
T PF01041_consen 68 VIVPAYTFPATASA--------ILWAGAEP--VFVDIDPETLNIDPEALEKAITP-KTKAILVV-HLFGNPADMDAIRAI 135 (363)
T ss_dssp EEEESSS-THHHHH--------HHHTT-EE--EEE-BETTTSSB-HHHHHHHHHT-TEEEEEEE--GGGB---HHHHHHH
T ss_pred EecCCCcchHHHHH--------HHHhccEE--EEEeccCCcCCcCHHHHHHHhcc-CccEEEEe-cCCCCcccHHHHHHH
Confidence 99999888777553 33557555 55567878899999999999998 89988763 447878899999999
Q ss_pred HHHcCCEEEEeccccccccccCCCCCCCCCceEEEeCC--CCcCCCCCceEEEEeCC
Q 018231 219 CNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTT--HKSLRGPRGAMIFFRKG 273 (359)
Q Consensus 219 a~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~--~K~l~gp~gG~l~~~~~ 273 (359)
|+++|++||.|++|+.|....+.....+ .|+.++|+ .|.+.+..||+++++++
T Consensus 136 ~~~~~i~lIeD~a~a~g~~~~g~~~G~~--gd~~~fSf~~~K~i~~geGG~v~~~~~ 190 (363)
T PF01041_consen 136 ARKHGIPLIEDAAQAFGARYKGRPVGSF--GDIAIFSFHPTKIITTGEGGAVVTNDP 190 (363)
T ss_dssp HHHTT-EEEEE-TTTTT-EETTEETTSS--SSEEEEESSTTSSS-SSS-EEEEESTH
T ss_pred HHHcCCcEEEccccccCceeCCEeccCC--CCceEecCCCCCCCcCCCCeeEEecHH
Confidence 9999999999999999987765433333 36666665 59998888999999985
No 67
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=99.84 E-value=8.9e-20 Score=172.53 Aligned_cols=223 Identities=18% Similarity=0.153 Sum_probs=150.5
Q ss_pred cHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhhcCCCCe
Q 018231 59 SVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDR 138 (359)
Q Consensus 59 ~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al~~~Gd~ 138 (359)
+|+|++++.+++.+ +..++.+.+++.+ .....+.+++.+++++|++. .+++++|+.++..++.++++|||+
T Consensus 17 ~~~v~~a~~~~~~~-~~~~~~~~~~~~~---~~~~~~~l~~~la~~~~~~~-----~iv~~sg~~a~~~~~~~~~~~gd~ 87 (349)
T cd06454 17 HPEVIEAAKEALDK-YGVGAGGSRLISG---TSDLHEELEEELAEFHGKEA-----ALVFSSGYAANDGVLSTLAGKGDL 87 (349)
T ss_pred CHHHHHHHHHHHHH-hCCCCCCcCeecC---CchHHHHHHHHHHHHhCCCC-----EEEeccHHHHHHHHHHHhcCCCCE
Confidence 58999999999875 4222222112212 12222346688999999853 477888877777778888999999
Q ss_pred eeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhh----hCCcEEEEc-CCC-CCChhhH
Q 018231 139 IMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL----FRPKLIVAG-ASA-YARLYDY 212 (359)
Q Consensus 139 Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~----~~~k~v~l~-~~n-~g~~~~l 212 (359)
|++.++.|++... .+...|.++..++ .+|++++++.+++ .++++++++ ++| +|...|+
T Consensus 88 Vl~~~~~~~~~~~--------~~~~~g~~~~~~~--------~~~~~~le~~i~~~~~~~~~~~v~~~~~~~~tG~~~~~ 151 (349)
T cd06454 88 IISDSLNHASIID--------GIRLSGAKKRIFK--------HNDMEDLEKLLREARRPYGKKLIVTEGVYSMDGDIAPL 151 (349)
T ss_pred EEEehhhhHHHHH--------HHHHcCCceEEec--------CCCHHHHHHHHHHhhccCCCeEEEEeccccCCCCccCH
Confidence 9999877765432 2233455454332 2477888888875 246777776 556 8999999
Q ss_pred HHHHHHHHHcCCEEEEeccccccccccCCC-----CCCCCCceEEEeCCCCcCCCCCceEEEEeCCcchhccCCcchhhh
Q 018231 213 ERIRKVCNKQKAIMLADMAHISGLVAAGVI-----PSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYD 287 (359)
Q Consensus 213 ~~i~~la~~~~~~vivD~a~~~g~~~~~~~-----~~~~~~~D~v~~s~~K~l~gp~gG~l~~~~~~~~~~~~g~~~~~~ 287 (359)
++|.++|+++|+++|+|++|+.|....... .....+.|++++|+||+++. +||+++.++ +
T Consensus 152 ~~i~~~~~~~~~~livD~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~-~gG~i~~~~--------------~ 216 (349)
T cd06454 152 PELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFGA-VGGYIAGSK--------------E 216 (349)
T ss_pred HHHHHHHHHcCCEEEEEccccccccCCCCCChhhhccccccCcEEEeechhhhcc-cCCEEECCH--------------H
Confidence 999999999999999999998776532110 00112489999999998855 678887766 4
Q ss_pred HHHhhccccCCCCC-CCCcHHHHHHHHHHHHHHhc
Q 018231 288 YEEKINQAVFPGLQ-GGPHNHTITGLAVALKQVCT 321 (359)
Q Consensus 288 ~~~~~~~~~~~~~~-gt~~~~~i~al~~Al~~~~~ 321 (359)
+.+.+.....+... ++++...++++.++++++.+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~ 251 (349)
T cd06454 217 LIDYLRSYARGFIFSTSLPPAVAAAALAALEVLQG 251 (349)
T ss_pred HHHHHHHhchhhhccCCCCHHHHHHHHHHHHHHhc
Confidence 44333322222222 56777888888899988765
No 68
>PRK07681 aspartate aminotransferase; Provisional
Probab=99.84 E-value=4.5e-19 Score=171.05 Aligned_cols=228 Identities=15% Similarity=0.121 Sum_probs=154.1
Q ss_pred cccccccChHHHHHHHHHHHHh----hcCceeeCCCCC--CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHH
Q 018231 24 NAPLEVVDPEIADIIEHEKARQ----WKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLC 97 (359)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~----~~~i~l~~~~~~--~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~ 97 (359)
+++.....++.+..+.....+. .+.++|..+++. +++.+.+++.+.+......+|+ ..+..++++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~y~-------~~G~~~lr~ai 78 (399)
T PRK07681 6 ATRMKAFQSSIFSELGAYKKEKIAAGHKMIDLSIGNPDMPPADFVREEMVHTANQKESYGYT-------LSGIQEFHEAV 78 (399)
T ss_pred hHHHhhcCccHHHHHHHHHHHhhhcCCCeEEeCCCCCCCCCCHHHHHHHHHHHhccccCCCC-------CCCcHHHHHHH
Confidence 3444445556666655543322 356888877663 6788888888876531101221 13456777778
Q ss_pred HHHHHHHcCC--CCCCCceeEEECCChH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecc
Q 018231 98 QKRALEAFRL--DPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYR 174 (359)
Q Consensus 98 ~~~~a~~~g~--~~~~~~~~v~~tsG~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 174 (359)
.+++.+.+|. ++++ +|++|+|++ ++..++.+++++||+|+++++.|+ .+...+...|+++..++
T Consensus 79 a~~~~~~~g~~~~~~~---~I~it~G~~~al~~~~~~~~~~Gd~Vlv~~P~y~--------~~~~~~~~~G~~~~~v~-- 145 (399)
T PRK07681 79 TEYYNNTHNVILNADK---EVLLLMGSQDGLVHLPMVYANPGDIILVPDPGYT--------AYETGIQMAGATSYYMP-- 145 (399)
T ss_pred HHHHHHHhCCCCCCCC---eEEECCCcHHHHHHHHHHhCCCCCEEEECCCCcc--------chHHHHHhcCCEEEEEe--
Confidence 8888777775 4422 599999999 887788899999999999995554 33334556677665565
Q ss_pred cCC-CCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhh---HHHHHHHHHHcCCEEEEeccccccccccCCCC--CCC
Q 018231 175 LNE-STGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIP--SPF 246 (359)
Q Consensus 175 ~~~-~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~---l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~--~~~ 246 (359)
+++ +++.+|++++++.+.+ ++++++++ |+| ||...+ +++|.++|+++|++||+|++++.-........ ..+
T Consensus 146 ~~~~~~~~~d~~~l~~~~~~-~~k~v~l~~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~ 224 (399)
T PRK07681 146 LKKENDFLPDLELIPEEIAD-KAKMMILNFPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSV 224 (399)
T ss_pred cCCCCCCcCCHHHHHHhccc-cceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhC
Confidence 443 3568899999998876 89999998 888 996665 77888899999999999999863322111000 001
Q ss_pred C---CceEEEeCCCCcCC--CCCceEEEEeC
Q 018231 247 E---YADVVTTTTHKSLR--GPRGAMIFFRK 272 (359)
Q Consensus 247 ~---~~D~v~~s~~K~l~--gp~gG~l~~~~ 272 (359)
. ...+++.|++|.++ |.+.|+++.++
T Consensus 225 ~~~~~~~i~~~S~SK~~~~~GlRiG~~i~~~ 255 (399)
T PRK07681 225 PGAKEVGVEINSLSKSYSLAGSRIGYMIGNE 255 (399)
T ss_pred CCCcccEEEEeecccccCCccceeEEEecCH
Confidence 1 24588899999874 33349998876
No 69
>PRK07179 hypothetical protein; Provisional
Probab=99.84 E-value=2.1e-19 Score=173.79 Aligned_cols=223 Identities=15% Similarity=0.212 Sum_probs=151.1
Q ss_pred cHHHHHHHHhhhhccCCCCCC-CCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhhcCCCC
Q 018231 59 SVSVMQAVGSVMTNKYSEGYP-GARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHD 137 (359)
Q Consensus 59 ~~~v~~al~~~~~~~~~~g~~-~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al~~~Gd 137 (359)
.|++++++.+.+.. +..+.. ...+..+.....+++ +.+++++|++. .+++++|+.++..++.++..+||
T Consensus 70 ~p~v~~a~~~~~~~-~~~~~~~s~~~~~~~~~~~~le----~~la~~~g~~~-----~~~~~sG~~An~~~l~~l~~~g~ 139 (407)
T PRK07179 70 HPDIIKAQIAALQE-EGDSLVMSAVFLHDDSPKPQFE----KKLAAFTGFES-----CLLCQSGWAANVGLLQTIADPNT 139 (407)
T ss_pred CHHHHHHHHHHHHH-hCCCCCccccccCCchHHHHHH----HHHHHHhCCCc-----EEEECCHHHHHHHHHHHhCCCCC
Confidence 68999999998875 311111 223333333344444 78999999864 24444444499889999999999
Q ss_pred eeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhhHHHH
Q 018231 138 RIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERI 215 (359)
Q Consensus 138 ~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~l~~i 215 (359)
.|++..+.|.+... ++...|.++ ++++ ..|++++++.+++.++++|+++ ++| +|.+.|+++|
T Consensus 140 ~v~~~~~~h~s~~~--------~~~~~g~~~--~~~~------~~d~~~l~~~l~~~~~~lV~v~~v~n~tG~i~pl~~I 203 (407)
T PRK07179 140 PVYIDFFAHMSLWE--------GVRAAGAQA--HPFR------HNDVDHLRRQIERHGPGIIVVDSVYSTTGTIAPLADI 203 (407)
T ss_pred EEEEECCcCHHHHH--------HHHHCCCeE--EEec------CCCHHHHHHHHHhcCCeEEEECCCCCCCCccccHHHH
Confidence 99988877766532 222334333 3322 2489999999976347788887 555 8999999999
Q ss_pred HHHHHHcCCEEEEeccccccccccC----CCCCCCC-CceEEEeCCCCcCCCCCceEEEEeCCcchhccCCcchhhhHHH
Q 018231 216 RKVCNKQKAIMLADMAHISGLVAAG----VIPSPFE-YADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEE 290 (359)
Q Consensus 216 ~~la~~~~~~vivD~a~~~g~~~~~----~~~~~~~-~~D~v~~s~~K~l~gp~gG~l~~~~~~~~~~~~g~~~~~~~~~ 290 (359)
.++|+++|+++|+|++|+.|..... ....+.. .+|++++|+||+++ +++|++++++ ++.+
T Consensus 204 ~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~vdi~~~S~sK~~g-~~~G~l~~~~--------------~~~~ 268 (407)
T PRK07179 204 VDIAEEFGCVLVVDESHSLGTHGPQGAGLVAELGLTSRVHFITASLAKAFA-GRAGIITCPR--------------ELAE 268 (407)
T ss_pred HHHHHHcCCEEEEECcccccCcCCCCCchHHhcCCCCCCCEEEeechHhhh-ccCeEEEeCH--------------HHHH
Confidence 9999999999999999987754211 1112221 47999999999985 4579998877 4444
Q ss_pred hhccccCCCCC-CCCcHHHHHHHHHHHHHHhcc
Q 018231 291 KINQAVFPGLQ-GGPHNHTITGLAVALKQVCTL 322 (359)
Q Consensus 291 ~~~~~~~~~~~-gt~~~~~i~al~~Al~~~~~~ 322 (359)
.+.....+..+ +|++...++++.++++.+...
T Consensus 269 ~~~~~~~~~~~~~t~~~~~~aa~~aal~~~~~~ 301 (407)
T PRK07179 269 YVPFVSYPAIFSSTLLPHEIAGLEATLEVIESA 301 (407)
T ss_pred HHHHhCcCeeeCCCCCHHHHHHHHHHHHHHhcC
Confidence 43332233333 677778888888888877543
No 70
>PRK05942 aspartate aminotransferase; Provisional
Probab=99.84 E-value=5.5e-19 Score=170.13 Aligned_cols=229 Identities=14% Similarity=0.122 Sum_probs=151.7
Q ss_pred ccccccChHHHHHHHHHHHH----hhcCceeeCCCCC--CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHH
Q 018231 25 APLEVVDPEIADIIEHEKAR----QWKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQ 98 (359)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~----~~~~i~l~~~~~~--~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~ 98 (359)
++++.+.++.+..+.+.+.. ..+.++|..+... +|+.+.+++.+.+.... ...|+...+..++++++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~p~~~~p~~~~~~~~~~~~~~~------~~~Y~~~~G~~~lr~aia 83 (394)
T PRK05942 10 DRLQALPPYVFARLDELKARAREQGLDLIDLGMGNPDGAAPQPVIEAAIAALADPQ------NHGYPPFEGTASFRQAIT 83 (394)
T ss_pred hhhccCCCcHHHHHHHHHHHHHhcCCCeEEcCCCCCCCCCCHHHHHHHHHHHhCCC------CccCCCCCCCHHHHHHHH
Confidence 34455556655554443221 1245788755432 45667777766654311 122344456678888888
Q ss_pred HHHHHHcCC--CCCCCceeEEECCChH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEeccc
Q 018231 99 KRALEAFRL--DPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL 175 (359)
Q Consensus 99 ~~~a~~~g~--~~~~~~~~v~~tsG~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 175 (359)
+++.+.+|. ++++ .|++|+|++ ++..++.++++|||+|++++++|+.+.. .+...|.++..++++.
T Consensus 84 ~~~~~~~~~~~~~~~---~i~vt~G~~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~--------~~~~~g~~~~~v~~~~ 152 (394)
T PRK05942 84 DWYHRRYGVELDPDS---EALPLLGSKEGLTHLALAYVNPGDVVLVPSPAYPAHFR--------GPLIAGAQIYPIILKP 152 (394)
T ss_pred HHHHHHHCCCcCCCC---eEEEccChHHHHHHHHHHhCCCCCEEEEcCCCCcchHH--------HHHHcCCEEEEeecCC
Confidence 888887775 4432 488999999 8877888999999999999976665432 2334566665555332
Q ss_pred CCCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhh---HHHHHHHHHHcCCEEEEecccccccccc----CCCCC-C
Q 018231 176 NESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAA----GVIPS-P 245 (359)
Q Consensus 176 ~~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~---l~~i~~la~~~~~~vivD~a~~~g~~~~----~~~~~-~ 245 (359)
+ +++.+|++++++.+.+ ++|+++++ |+| ||...+ +++|.++|+++|+++|+|++++...... .+... +
T Consensus 153 ~-~~~~~d~~~l~~~~~~-~~k~i~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~ 230 (394)
T PRK05942 153 E-NDWLIDLSSIPEEVAQ-QAKILYFNYPSNPTTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPG 230 (394)
T ss_pred c-cCCccCHHHHHHhccc-cceEEEEcCCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCC
Confidence 2 3568999999998877 89999998 888 997665 7788899999999999999975332211 11000 0
Q ss_pred CCCceEEEeCCCCcCCCC--CceEEEEeC
Q 018231 246 FEYADVVTTTTHKSLRGP--RGAMIFFRK 272 (359)
Q Consensus 246 ~~~~D~v~~s~~K~l~gp--~gG~l~~~~ 272 (359)
.....+++.|++|.|+.| +.|++++++
T Consensus 231 ~~~~~i~~~SfSK~~~~~GlRiG~i~~~~ 259 (394)
T PRK05942 231 AKDIGVEFHTLSKTYNMAGWRVGFVVGNR 259 (394)
T ss_pred ccccEEEEecchhccCChhhheeeeecCH
Confidence 012457789999977433 239998876
No 71
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase. This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).
Probab=99.84 E-value=1.4e-19 Score=174.52 Aligned_cols=199 Identities=9% Similarity=0.007 Sum_probs=145.4
Q ss_pred CCCCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCC-C-CCCceeEEECCChH-HHHHHHHh
Q 018231 55 ENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLD-P-EKWGVNVQSLSGSP-SNFQVYTA 131 (359)
Q Consensus 55 ~~~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~-~-~~~~~~v~~tsG~~-a~~~~~~a 131 (359)
..++.|.+.+++...+...+ +++.. . ....++++.+++++++++|++ + ++ ....+|||+| +|..++.+
T Consensus 50 tt~~~p~~~~~~~~~l~~~~--~np~s---~--~~~~~le~~~~~~la~llg~~~~~~~--~~g~~TsGgTEAn~~al~~ 120 (431)
T TIGR01788 50 TTWMEPEARKLMDETINKNM--IDKDE---Y--PQTAEIENRCVNMLADLWHAPAKDAE--AVGTSTIGSSEAIMLGGLA 120 (431)
T ss_pred CCCCCHHHHHHHHHHHhcCC--CCccc---C--ccHHHHHHHHHHHHHHHhCCCCCCCC--CeEEEechHHHHHHHHHHH
Confidence 35667889999988887544 44433 1 123378888999999999997 3 33 1234478888 87766654
Q ss_pred hc--------CCC-----CeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcE
Q 018231 132 LL--------KPH-----DRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKL 198 (359)
Q Consensus 132 l~--------~~G-----d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~ 198 (359)
.. +.| -.|++++.+|.++.. .+...|.+++.++ ++++++.+|+++|++.+++ +|.+
T Consensus 121 ar~~~~~~~~~~g~~~~~~~ii~s~~~H~sv~k--------a~~~lg~~v~~i~--~d~~~~~vd~~~L~~~i~~-~t~l 189 (431)
T TIGR01788 121 MKWRWRKRMEAAGKPTDKPNLVMGSNVQVCWEK--------FARYFDVELREVP--MDPGRYVIDPEQVVEAVDE-NTIG 189 (431)
T ss_pred HHHHHHHHHHhcCCCCCCcEEEEcCcchHHHHH--------HHHHcCceeEEEe--cCCCceeeCHHHHHHHHhh-CCeE
Confidence 32 112 368888888887643 2333455566665 5533468999999999988 8888
Q ss_pred EEEc-CCC-CCChhhHHHHHHHHHHc------CCEEEEeccccccccccCCCCCC----CCCceEEEeCCCCcCCCCCc-
Q 018231 199 IVAG-ASA-YARLYDYERIRKVCNKQ------KAIMLADMAHISGLVAAGVIPSP----FEYADVVTTTTHKSLRGPRG- 265 (359)
Q Consensus 199 v~l~-~~n-~g~~~~l~~i~~la~~~------~~~vivD~a~~~g~~~~~~~~~~----~~~~D~v~~s~~K~l~gp~g- 265 (359)
|+++ .+| +|.+.|+++|+++|+++ |+++++|++|+.+..++...+.+ ..++|.+++|+|||+.||.|
T Consensus 190 V~~t~g~t~tG~idpi~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~~~~~~DSis~s~HK~~~~P~g~ 269 (431)
T TIGR01788 190 VVCILGTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFRLPRVKSINVSGHKYGLVYPGV 269 (431)
T ss_pred EEEEeCCCCCcccCCHHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCchhhcCCCCceEEEECchhccCCCCCc
Confidence 8887 555 99999999999999999 99999999999766554332222 23689999999999889999
Q ss_pred eEEEEeCC
Q 018231 266 AMIFFRKG 273 (359)
Q Consensus 266 G~l~~~~~ 273 (359)
|+++++++
T Consensus 270 G~l~~r~~ 277 (431)
T TIGR01788 270 GWVIWRDE 277 (431)
T ss_pred EEEEEeCh
Confidence 99999885
No 72
>PRK12414 putative aminotransferase; Provisional
Probab=99.84 E-value=4.2e-19 Score=170.35 Aligned_cols=225 Identities=15% Similarity=0.202 Sum_probs=156.8
Q ss_pred cccccChHHHHHHHHHHHHhhcCceeeCCCCC--CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHH
Q 018231 26 PLEVVDPEIADIIEHEKARQWKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALE 103 (359)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~--~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~ 103 (359)
+++.+.+.++..+.+. ....+.|+|..+++. +++.+.+++.+.+.... ..|+...+..++++.+++++++
T Consensus 10 ~~~~~~~~~~~~~~~~-~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~-------~~Y~~~~G~~~lr~~ia~~l~~ 81 (384)
T PRK12414 10 KLPDVGTTIFTVIGQL-AAQHDALNLSQGAPNFAPDPALVEGVARAMRDGH-------NQYAPMAGIAALREALAEKTER 81 (384)
T ss_pred hcccCCccHHHHHHHH-HHhCCeEEcCCCCCCCCCCHHHHHHHHHHHHhCC-------CCcCCCCCcHHHHHHHHHHHHH
Confidence 3345555666655543 344567999877664 47888888887665421 1234345667888889999999
Q ss_pred HcCCC--CCCCceeEEECCChH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCC
Q 018231 104 AFRLD--PEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTG 180 (359)
Q Consensus 104 ~~g~~--~~~~~~~v~~tsG~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~ 180 (359)
++|++ +++ +|++|+|++ ++..++.++++|||+|++++++|... ...+...|.++..++ .+.+++
T Consensus 82 ~~g~~~~~~~---~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~--------~~~~~~~g~~~~~v~--~~~~~~ 148 (384)
T PRK12414 82 LYGARYDPAS---EVTVIASASEGLYAAISALVHPGDEVIYFEPSFDSY--------APIVRLQGATPVAIK--LSPEDF 148 (384)
T ss_pred HhCCCCCCCC---cEEEECChHHHHHHHHHHhcCCCCEEEEeCCCccch--------HHHHHHcCCEEEEEe--cCcccc
Confidence 99984 322 499999999 87778899999999999999666543 223344566565554 443467
Q ss_pred CCCHHHHHHHhhhhCCcEEEEc-CCC-CCCh---hhHHHHHHHHHHcCCEEEEeccccccccccC----CCCCC-CCCce
Q 018231 181 YIDYDQLEKSATLFRPKLIVAG-ASA-YARL---YDYERIRKVCNKQKAIMLADMAHISGLVAAG----VIPSP-FEYAD 250 (359)
Q Consensus 181 ~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~---~~l~~i~~la~~~~~~vivD~a~~~g~~~~~----~~~~~-~~~~D 250 (359)
.+|+++|++.+++ ++++++++ ++| ||.. .++++|.++|++||+++|+|+++..-..... +...+ ..+.-
T Consensus 149 ~~d~~~l~~~l~~-~~~~v~i~~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~ 227 (384)
T PRK12414 149 RVNWDEVAAAITP-RTRMIIVNTPHNPSATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERS 227 (384)
T ss_pred ccCHHHHHhhcCc-ccEEEEEcCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccCcE
Confidence 8999999999987 89999988 888 8864 4688899999999999999999753222110 11101 11234
Q ss_pred EEEeCCCCcCC--CCCceEEEEeC
Q 018231 251 VVTTTTHKSLR--GPRGAMIFFRK 272 (359)
Q Consensus 251 ~v~~s~~K~l~--gp~gG~l~~~~ 272 (359)
+++.|++|.|+ |.+-|++++++
T Consensus 228 i~~~SfSK~~~~pGlRiG~~v~~~ 251 (384)
T PRK12414 228 VIVSSFGKSYHVTGWRVGYCLAPA 251 (384)
T ss_pred EEEecccccccCccceEEEEecCH
Confidence 89999999873 33339999877
No 73
>PRK05957 aspartate aminotransferase; Provisional
Probab=99.84 E-value=4.2e-19 Score=170.67 Aligned_cols=228 Identities=12% Similarity=0.094 Sum_probs=157.1
Q ss_pred ccccccChHHHHHHHHHHHHhhcCceeeCCCC--CCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHH
Q 018231 25 APLEVVDPEIADIIEHEKARQWKGLELIPSEN--FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRAL 102 (359)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~--~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a 102 (359)
+++....+.++..+.+..++....++|..+++ ++++.+.+++.+.+..... ..|+...+..+++++++++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~a~~~~~~~~~~------~~Y~~~~G~~~lr~~~~~~l~ 79 (389)
T PRK05957 6 SRMDAVQSPIIPVVGQLIRENPGTISLGQGVVSYPPPPEAIEALNNFLANPEN------HKYQAVQGIPPLLEAITQKLQ 79 (389)
T ss_pred HHHHhcCCcHHHHHHHHHHhCCCeEEccCCCCCCCCCHHHHHHHHHHHhCCCC------CCCCCCCCCHHHHHHHHHHHH
Confidence 44455556666666655444445688887665 4788899999887653211 123333556777888889999
Q ss_pred HHcCCCCC-CCceeEEECCChH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCC
Q 018231 103 EAFRLDPE-KWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTG 180 (359)
Q Consensus 103 ~~~g~~~~-~~~~~v~~tsG~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~ 180 (359)
+.+|.+.+ . .+|++|+|++ ++..++.+++++||+|+++++.|..+.. .+...|.+++.++ .+ +++
T Consensus 80 ~~~g~~~~~~--~~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~P~y~~~~~--------~~~~~g~~~~~v~--~~-~~~ 146 (389)
T PRK05957 80 QDNGIELNNE--QAIVVTAGSNMAFMNAILAITDPGDEIILNTPYYFNHEM--------AITMAGCQPILVP--TD-DNY 146 (389)
T ss_pred HHhCCCCCCC--CeEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCCcCHHH--------HHHhcCCEEEEee--cC-CCC
Confidence 99997421 1 2599999999 7777888889999999999866654422 2334566665554 44 567
Q ss_pred CCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhh---HHHHHHHHHHcCCEEEEeccccccccccCC--CCCCC---CCce
Q 018231 181 YIDYDQLEKSATLFRPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGV--IPSPF---EYAD 250 (359)
Q Consensus 181 ~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~---l~~i~~la~~~~~~vivD~a~~~g~~~~~~--~~~~~---~~~D 250 (359)
.+|++++++.+++ ++|+|+++ ++| ||...+ +++|.++|+++|+++|+|+++......... ....+ ....
T Consensus 147 ~~d~~~l~~~i~~-~~klv~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~ 225 (389)
T PRK05957 147 QLQPEAIEQAITP-KTRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHT 225 (389)
T ss_pred CcCHHHHHHhcCc-CceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCCccCcE
Confidence 8999999999987 89999887 888 897665 888999999999999999997532221100 00010 0234
Q ss_pred EEEeCCCCcCCCC--CceEEEEeC
Q 018231 251 VVTTTTHKSLRGP--RGAMIFFRK 272 (359)
Q Consensus 251 ~v~~s~~K~l~gp--~gG~l~~~~ 272 (359)
+++.|.+|.++.| +-|++++++
T Consensus 226 i~~~S~SK~~g~~GlRiG~~~~~~ 249 (389)
T PRK05957 226 ISLYSLSKAYGFASWRIGYMVIPI 249 (389)
T ss_pred EEEecchhhccCccceeEEEecCH
Confidence 7889999987322 239999876
No 74
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=99.84 E-value=6.4e-19 Score=169.07 Aligned_cols=207 Identities=16% Similarity=0.105 Sum_probs=144.4
Q ss_pred hcCceeeCCCCC--CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCC--CCCCceeEEECCC
Q 018231 46 WKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLD--PEKWGVNVQSLSG 121 (359)
Q Consensus 46 ~~~i~l~~~~~~--~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~--~~~~~~~v~~tsG 121 (359)
.+.++|..+++. +++.+.+++.+.+..... ..|+...+..++++++++++.+.+|.+ +++ +|++|+|
T Consensus 29 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~---~vi~t~G 99 (383)
T TIGR03540 29 VDVISLGIGDPDLPTPKHIVEALCKAAENPEN------HRYPSYEGMLAYRQAVADWYKRRFGVELDPET---EVLSLIG 99 (383)
T ss_pred CCeEEeCCCCCCCCCCHHHHHHHHHHHhCCCC------CCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCC---eEEECCC
Confidence 356888876654 577888988887653211 123333556778888888888877763 332 4899999
Q ss_pred hH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCC-CCCCCCHHHHHHHhhhhCCcEE
Q 018231 122 SP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNE-STGYIDYDQLEKSATLFRPKLI 199 (359)
Q Consensus 122 ~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~-~~~~~d~e~l~~~i~~~~~k~v 199 (359)
++ ++..++.+++++||+|++++++|+. +...+...|.++..++ .+. +++.+|++++++.+.+ +++++
T Consensus 100 ~~~~l~~~~~~~~~~gd~vlv~~P~y~~--------~~~~~~~~G~~v~~v~--~~~~~g~~~d~~~l~~~~~~-~~~~v 168 (383)
T TIGR03540 100 SKEGIAHIPLAFVNPGDIVLVPDPGYPV--------YRIGTLFAGGEPYEMP--LKEENGFLPDFDAIPEDIAK-KAKLM 168 (383)
T ss_pred cHHHHHHHHHHhCCCCCEEEEeCCCCcc--------hHHHHHhcCCEEEEEe--cCcccCCccCHHHHHhhccc-cceEE
Confidence 99 8777888899999999999955543 3334456677676665 442 3567899999998876 89999
Q ss_pred EEc-CCC-CCChhh---HHHHHHHHHHcCCEEEEecccccccccc----CCCCCC-CCCceEEEeCCCCcCC--CCCceE
Q 018231 200 VAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAA----GVIPSP-FEYADVVTTTTHKSLR--GPRGAM 267 (359)
Q Consensus 200 ~l~-~~n-~g~~~~---l~~i~~la~~~~~~vivD~a~~~g~~~~----~~~~~~-~~~~D~v~~s~~K~l~--gp~gG~ 267 (359)
+++ |+| ||...+ +++|.++|++||+++|+|+++....... ...... .....+++.|++|.|+ |.+-|+
T Consensus 169 ~i~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~ 248 (383)
T TIGR03540 169 FINYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYNMTGWRIGM 248 (383)
T ss_pred EEeCCCCCcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCCcccCEEEEEecccccCCccceeeE
Confidence 998 888 896665 6788999999999999999986322211 111100 0124577899999874 222399
Q ss_pred EEEeC
Q 018231 268 IFFRK 272 (359)
Q Consensus 268 l~~~~ 272 (359)
++.++
T Consensus 249 ~i~~~ 253 (383)
T TIGR03540 249 AVGNA 253 (383)
T ss_pred EeCCH
Confidence 98766
No 75
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=99.83 E-value=2.6e-19 Score=177.98 Aligned_cols=226 Identities=18% Similarity=0.124 Sum_probs=155.8
Q ss_pred ccccccccChHHHHHHHHHHHHh----hcCceeeCCCC-----CCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHH
Q 018231 23 LNAPLEVVDPEIADIIEHEKARQ----WKGLELIPSEN-----FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMA 93 (359)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~----~~~i~l~~~~~-----~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l 93 (359)
+++++..+.+++...+.+...+. .+.|+|..|+. ++|+.+++++.+.+.... + |+...+..++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~G~p~~~~~~~p~~~~~~~~~~~~~~~--~------Y~~~~G~~~l 190 (517)
T PRK13355 119 KSHKLDNVLYDVRGPVVDEANRMEAAGTHILKLNIGNPAPFGFRTPDEVVYDMAQQLTDTE--G------YSDSKGLFSA 190 (517)
T ss_pred hhHHhhccCccHHHHHHHHHHHHHHcCCCeEEecCcCCCcCCCCCCHHHHHHHHHHhhcCC--C------CCCCcChHHH
Confidence 57777778777776665543332 35688887444 358899999888765321 2 3444667778
Q ss_pred HHHHHHHHHHHcC--CCCCCCceeEEECCChH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEE
Q 018231 94 ESLCQKRALEAFR--LDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFET 170 (359)
Q Consensus 94 ~~~~~~~~a~~~g--~~~~~~~~~v~~tsG~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 170 (359)
++++.+++.+..+ ++++ +|++|+|++ ++..++.+++++||+|+++++.| +.+...+...|.+++.
T Consensus 191 Reaia~~~~~~~~~~~~~~----~I~it~G~~eal~~~~~~l~~~Gd~Vli~~P~y--------~~y~~~~~~~g~~~v~ 258 (517)
T PRK13355 191 RKAIMQYAQLKGLPNVDVD----DIYTGNGVSELINLSMSALLDDGDEVLIPSPDY--------PLWTACVNLAGGTAVH 258 (517)
T ss_pred HHHHHHHHHhcCCCCCChh----HEEEeCcHHHHHHHHHHHhCCCCCEEEEcCCCC--------cCHHHHHHHCCCEEEE
Confidence 7777777765543 4554 599999999 87778899999999999999544 4444455566766655
Q ss_pred EecccCCCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhh---HHHHHHHHHHcCCEEEEeccccccccccCCCCCC
Q 018231 171 MPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP 245 (359)
Q Consensus 171 v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~---l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~ 245 (359)
++++.+ +++.+|++++++.+++ ++|+|+++ |+| ||.+.+ +++|+++|++||++||+|+++..-... +.....
T Consensus 259 ~~~~~~-~~~~~d~~~l~~~~~~-~~k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~-~~~~~s 335 (517)
T PRK13355 259 YRCDEQ-SEWYPDIDDIRSKITS-RTKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMD-GLEHTS 335 (517)
T ss_pred eecCcc-cCCCCCHHHHHHhcCc-CceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCC-CCCccc
Confidence 553222 4678999999999987 89999887 888 997665 788899999999999999997532211 111111
Q ss_pred CC--Cce---EEEeCCCCcC--CCCCceEEEEe
Q 018231 246 FE--YAD---VVTTTTHKSL--RGPRGAMIFFR 271 (359)
Q Consensus 246 ~~--~~D---~v~~s~~K~l--~gp~gG~l~~~ 271 (359)
+. .-| +.+.|++|.+ .|.+-|++++.
T Consensus 336 ~~~~~~~~~vi~~~S~SK~~~~~G~RiG~~i~~ 368 (517)
T PRK13355 336 IASLAPDLFCVTFSGLSKSHMIAGYRIGWMILS 368 (517)
T ss_pred HHHhCCCCeEEEEecchhhccCcccceEEEEee
Confidence 10 012 3357889986 45555999865
No 76
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=99.83 E-value=4.8e-19 Score=170.73 Aligned_cols=172 Identities=13% Similarity=0.120 Sum_probs=124.5
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCCceeEEECC-ChH-HHHHHHHhhcCC--CCeeeecCCCCCcccCccccccccceee
Q 018231 88 EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLS-GSP-SNFQVYTALLKP--HDRIMALDLPHGGHLSHGYQTDTKKISA 163 (359)
Q Consensus 88 ~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~ts-G~~-a~~~~~~al~~~--Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~ 163 (359)
.+..++++.+++++++++|++.++ +.+++ |++ ++.+++.+++.+ ||+|+++++.|+++...+..... .
T Consensus 60 ~g~~~~~~~~~~~la~~~g~~~~~----v~~~~~g~~~~~~~~~~~~~~~~~gd~Vl~~~~~h~~~~~~~~~~~~----~ 131 (398)
T cd00613 60 QGRLQALFELQTMLCELTGMDVAN----ASLQDEATAAAEAAGLAAIRAYHKRNKVLVPDSAHPTNPAVARTRGE----P 131 (398)
T ss_pred hhHHHHHHHHHHHHHHHHCCCccc----eeccCchHHHHHHHHHHHHhcccCCCEEEEcCccCcchHHHHHHhcc----c
Confidence 445677788999999999997643 55555 555 555455566666 99999999888877544331111 1
Q ss_pred eeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc-CCCCCChhhH-HHHHHHHHHcCCEEEEeccccccccccCC
Q 018231 164 VSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASAYARLYDY-ERIRKVCNKQKAIMLADMAHISGLVAAGV 241 (359)
Q Consensus 164 ~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n~g~~~~l-~~i~~la~~~~~~vivD~a~~~g~~~~~~ 241 (359)
.|.+++.++ .+ +++.+|++++++.+++ ++++|+++ ++.+|.+.++ ++|.++|+++|+++|+|++|+.+....+.
T Consensus 132 ~g~~~~~v~--~~-~~~~~d~~~l~~~i~~-~t~~viv~~~~~~G~~~~~l~~i~~la~~~g~~livD~~~~~~~~~~~~ 207 (398)
T cd00613 132 LGIEVVEVP--SD-EGGTVDLEALKEEVSE-EVAALMVQYPNTLGVFEDLIKEIADIAHSAGALVYVDGDNLNLTGLKPP 207 (398)
T ss_pred CCcEEEEec--cC-CCCCcCHHHHHHhcCC-CeEEEEEECCCCCceecchHHHHHHHHHhcCCEEEEEeccccccCCCCh
Confidence 135555554 44 4467899999999987 89999888 4447877775 99999999999999999998776654443
Q ss_pred CCCCCCCceEEEeCCCCcCC-----CCCceEEEEeCCc
Q 018231 242 IPSPFEYADVVTTTTHKSLR-----GPRGAMIFFRKGV 274 (359)
Q Consensus 242 ~~~~~~~~D~v~~s~~K~l~-----gp~gG~l~~~~~~ 274 (359)
...+ +|++++|+|||+. ||.+|++++++++
T Consensus 208 ~~~~---~d~~~~s~~K~~~p~g~Ggp~~g~l~~~~~~ 242 (398)
T cd00613 208 GEYG---ADIVVGNLQKTGVPHGGGGPGAGFFAVKKEL 242 (398)
T ss_pred HHcC---CCEEEeeccccCCCCCCCCCceeEEEEhhhh
Confidence 3334 8999999999982 2444899988754
No 77
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=99.83 E-value=9.5e-19 Score=168.01 Aligned_cols=229 Identities=16% Similarity=0.122 Sum_probs=153.8
Q ss_pred ccccccChHHHHHHHHHHHH----hhcCceeeCCCCC--CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHH
Q 018231 25 APLEVVDPEIADIIEHEKAR----QWKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQ 98 (359)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~----~~~~i~l~~~~~~--~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~ 98 (359)
+++....++.+..+.+..++ ..+.++|..+++. +++.+.+++.+.+..... ..|+...+..++++++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~Y~~~~G~~~lr~aia 79 (385)
T PRK09276 6 DRIKNLPPYLFAEIDKKKAEKIARGVDVISLGIGDPDLPTPDHIIEAMCKAVEDPEN------HQYPSYEGMLEFRKAVA 79 (385)
T ss_pred hHhhhCCccHHHHHHHHHHHHHhcCCCEEEecCCCCCCCCCHHHHHHHHHHHhCCCC------CCCCCCCCcHHHHHHHH
Confidence 34445566655554443222 2356888877764 577888888887654211 12333355677887888
Q ss_pred HHHHHHcCC--CCCCCceeEEECCChH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEeccc
Q 018231 99 KRALEAFRL--DPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL 175 (359)
Q Consensus 99 ~~~a~~~g~--~~~~~~~~v~~tsG~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 175 (359)
+++.+.+|. ++++ +|++|+|++ ++..++.++++|||+|+++++.|+ .+...+...|.++..+++..
T Consensus 80 ~~~~~~~g~~~~~~~---~ii~t~G~~~~i~~~~~~~~~~gd~Vl~~~P~y~--------~~~~~~~~~g~~~~~v~~~~ 148 (385)
T PRK09276 80 DWYKRRFGVELDPET---EVISLIGSKEGIAHIPLAFVNPGDVVLVPDPGYP--------VYKIGTIFAGGEPYFMPLKE 148 (385)
T ss_pred HHHHHHhCCCCCCCC---cEEEccCcHHHHHHHHHHhCCCCCEEEEcCCCCc--------ChHHHHHHcCCEEEEEecCC
Confidence 888877775 3432 499999998 777788889999999999995544 33334455677666665422
Q ss_pred CCCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhh---HHHHHHHHHHcCCEEEEecccccccccc----CCCCCC-
Q 018231 176 NESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAA----GVIPSP- 245 (359)
Q Consensus 176 ~~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~---l~~i~~la~~~~~~vivD~a~~~g~~~~----~~~~~~- 245 (359)
+ +++.+|++++++.+.+ ++++|+++ |+| ||...+ +++|.++|++||+++|+|+++....... ......
T Consensus 149 ~-~g~~~d~~~l~~~~~~-~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~ 226 (385)
T PRK09276 149 E-NGFLPDLDAIPEDVAK-KAKLMFINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPG 226 (385)
T ss_pred C-CCCcCCHHHHHHhccc-cceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccCC
Confidence 2 3567899999988876 89999998 888 896665 6788889999999999999986432211 110000
Q ss_pred CCCceEEEeCCCCcCCCC--CceEEEEeC
Q 018231 246 FEYADVVTTTTHKSLRGP--RGAMIFFRK 272 (359)
Q Consensus 246 ~~~~D~v~~s~~K~l~gp--~gG~l~~~~ 272 (359)
..+..+++.|++|.|+.| +-|+++.++
T Consensus 227 ~~~~~i~~~S~SK~~g~~GlRiG~~i~~~ 255 (385)
T PRK09276 227 AKDVGIEFHSLSKTYNMTGWRIGFAVGNA 255 (385)
T ss_pred CcCCEEEEecchhhcCCcchhheeeeCCH
Confidence 012457889999987422 239998876
No 78
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=99.83 E-value=2.3e-19 Score=172.79 Aligned_cols=236 Identities=16% Similarity=0.143 Sum_probs=157.5
Q ss_pred cCceeeCCCC---CCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH
Q 018231 47 KGLELIPSEN---FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP 123 (359)
Q Consensus 47 ~~i~l~~~~~---~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~ 123 (359)
+.|+|..+.. .+++.+.+++.+.+.. +..+++...+. .+..++++++++++++++|.+. +|++|+|++
T Consensus 43 ~~i~l~~~~~~~~~~~~~i~~a~~~~~~~-~~~~~~~~~~~---~G~~~l~~~l~~~la~~~g~~~-----~i~~tsG~~ 113 (397)
T PRK06939 43 EVINFCANNYLGLANHPELIAAAKAALDS-HGFGMASVRFI---CGTQDLHKELEEKLAKFLGTED-----AILYSSCFD 113 (397)
T ss_pred eEEEeeccCccccCCCHHHHHHHHHHHHH-cCCCCcccccc---cCCcHHHHHHHHHHHHHhCCCc-----EEEEcChHH
Confidence 4588876542 2688899999888765 21233222211 2234455667799999999752 599999966
Q ss_pred HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhh---h--CCcE
Q 018231 124 SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL---F--RPKL 198 (359)
Q Consensus 124 a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~---~--~~k~ 198 (359)
++..++.++++|||+|++.++.|++... .+...+.++..++ . .|++++++.+++ . ++++
T Consensus 114 a~~~~~~~l~~~gd~vi~~~~~~~~~~~--------~~~~~~~~~~~~~--~------~d~~~l~~~i~~~~~~~~~~~~ 177 (397)
T PRK06939 114 ANGGLFETLLGKEDAIISDALNHASIID--------GVRLCKAKRYRYA--N------NDMADLEAQLKEAKEAGARHKL 177 (397)
T ss_pred HHHHHHHHhCCCCCEEEEEhhhhHHHHH--------HHHhcCCceEEeC--C------CCHHHHHHHHHhhhccCCCCeE
Confidence 8787888999999999999977765532 2334454443332 2 388888888764 2 5667
Q ss_pred EEEc-CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCC----CCCCC-CCceEEEeCCCCcCCCCCceEEEEe
Q 018231 199 IVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGV----IPSPF-EYADVVTTTTHKSLRGPRGAMIFFR 271 (359)
Q Consensus 199 v~l~-~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~----~~~~~-~~~D~v~~s~~K~l~gp~gG~l~~~ 271 (359)
|+.. ..| +|...++++|.++|++||+++|+|++|+.|.....- ....+ .+.|++++|++|+++|+++|+++++
T Consensus 178 v~~~~v~~~~G~~~~~~~l~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~g~r~G~v~~~ 257 (397)
T PRK06939 178 IATDGVFSMDGDIAPLPEICDLADKYDALVMVDDSHAVGFVGENGRGTVEHFGVMDRVDIITGTLGKALGGASGGYTAGR 257 (397)
T ss_pred EEEecCcCCCCCcCCHHHHHHHHHHhCCEEEEECcccccCcCCCCCCHHHHcCCCCCCcEEEEECHHHhCccCceEEEeC
Confidence 7765 334 788889999999999999999999999766543210 01111 1478999999999988888999987
Q ss_pred CCcchhccCCcchhhhHHHhhccccCCCCC-CCCcHHHHHHHHHHHHHHhc
Q 018231 272 KGVKEINKQGKEVFYDYEEKINQAVFPGLQ-GGPHNHTITGLAVALKQVCT 321 (359)
Q Consensus 272 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-gt~~~~~i~al~~Al~~~~~ 321 (359)
+ ++.+.+.....+... ++++....+++.++++.+..
T Consensus 258 ~--------------~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~ 294 (397)
T PRK06939 258 K--------------EVIDWLRQRSRPYLFSNSLAPAIVAASIKVLELLEE 294 (397)
T ss_pred H--------------HHHHHHHHhCccccccCCCCHHHHHHHHHHHHHHhc
Confidence 6 444444332222222 44455556667777877653
No 79
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=99.83 E-value=2.3e-19 Score=171.71 Aligned_cols=185 Identities=16% Similarity=0.153 Sum_probs=135.1
Q ss_pred CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhh-cCCC
Q 018231 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL-LKPH 136 (359)
Q Consensus 58 ~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al-~~~G 136 (359)
.+++.++++.+.+.+.+ .+.+ ....++| +.+++++|++. .+.+++|+.++.+++.++ ++||
T Consensus 12 ~~~~e~~~~~~~l~~~~--------~~~g-~~~~~le----~~la~~~g~~~-----~v~~~sgt~al~lal~al~~~~G 73 (379)
T PRK11658 12 MGDEELAAVKEVLRSGW--------ITTG-PKNQALE----QAFCQLTGNQH-----AIAVSSATAGMHITLMALGIGPG 73 (379)
T ss_pred CCHHHHHHHHHHHHcCC--------ccCC-HhHHHHH----HHHHHHhCCCe-----EEEECCHHHHHHHHHHHcCCCCC
Confidence 45666778888776532 1112 2344444 88899999864 244444444888788888 8999
Q ss_pred CeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCChhhHHHHH
Q 018231 137 DRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIR 216 (359)
Q Consensus 137 d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~~~n~g~~~~l~~i~ 216 (359)
|+|++++++|.++.. .+...|++++.++ ++++++.+|++++++.+++ +||+|+.+. .+|...|+++|.
T Consensus 74 d~Viv~~~~~~~~~~--------~~~~~G~~~v~vd--~~~~~~~~d~~~l~~~i~~-~tkav~~~~-~~G~~~d~~~i~ 141 (379)
T PRK11658 74 DEVITPSLTWVSTLN--------MIVLLGATPVMVD--VDRDTLMVTPEAIEAAITP-RTKAIIPVH-YAGAPADLDAIR 141 (379)
T ss_pred CEEEECCCcHHHHHH--------HHHHcCCEEEEEe--cCCCcCCcCHHHHHHhccc-CCeEEEEeC-CCCCcCCHHHHH
Confidence 999999977776533 2334576665554 5545678999999999987 899887432 278889999999
Q ss_pred HHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEeCCCCcCCCCCceEEEEeCC
Q 018231 217 KVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKG 273 (359)
Q Consensus 217 ~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~gG~l~~~~~ 273 (359)
++|+++|+++|+|++|+.|....+..... .+.++++++.+|.+.++.||+++++++
T Consensus 142 ~~a~~~gi~vi~D~a~a~g~~~~~~~~g~-~g~~~~Sf~~~K~l~~g~GG~v~~~~~ 197 (379)
T PRK11658 142 AIGERYGIPVIEDAAHAVGTYYKGRHIGA-RGTAIFSFHAIKNITCAEGGLVVTDDD 197 (379)
T ss_pred HHHHHcCCeEEEECCCccCCeECCeecCC-CCCEEEeCCCCCcCcccCceEEEECCH
Confidence 99999999999999999988765422211 136888999999998888898888753
No 80
>PRK08068 transaminase; Reviewed
Probab=99.83 E-value=1e-18 Score=168.03 Aligned_cols=205 Identities=19% Similarity=0.193 Sum_probs=141.0
Q ss_pred cCceeeCCCC--CCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCC--CCCCCceeEEECCCh
Q 018231 47 KGLELIPSEN--FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRL--DPEKWGVNVQSLSGS 122 (359)
Q Consensus 47 ~~i~l~~~~~--~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~--~~~~~~~~v~~tsG~ 122 (359)
+.++|..+.. ++++.+.+++.+.+..... ..|+...+..++++++++++.+.+|. ++++ +|++|+|+
T Consensus 33 ~~i~l~~~~p~~~~~~~~~~~~~~~~~~~~~------~~Y~~~~g~~~lr~aia~~~~~~~g~~~~~~~---~i~it~G~ 103 (389)
T PRK08068 33 DVINLGQGNPDQPTPEHIVEALQEAAENPAN------HKYSPFRGYPFLKEAAADFYKREYGVTLDPET---EVAILFGG 103 (389)
T ss_pred CeEEecCCCCCCCCCHHHHHHHHHHHhCCCC------CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---cEEEcCCc
Confidence 4588876643 2457788888887654211 12333345677887787888776774 5541 49999999
Q ss_pred H-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCC-CCCCCCHHHHHHHhhhhCCcEEE
Q 018231 123 P-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNE-STGYIDYDQLEKSATLFRPKLIV 200 (359)
Q Consensus 123 ~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~-~~~~~d~e~l~~~i~~~~~k~v~ 200 (359)
+ ++..++.+++++||+|++++++|+ .+...+...|.++..++ .++ .++.+|++++++.+.+ ++++|+
T Consensus 104 ~~~l~~~~~~~~~~gd~vlv~~P~y~--------~~~~~~~~~g~~~~~i~--~~~~~~~~~d~~~l~~~~~~-~~~~v~ 172 (389)
T PRK08068 104 KAGLVELPQCLMNPGDTILVPDPGYP--------DYLSGVALARAQFETMP--LIAENNFLPDYTKIPEEVAE-KAKLMY 172 (389)
T ss_pred HHHHHHHHHHhCCCCCEEEEcCCCCc--------chHHHHHhcCCEEEEee--cccccCCCCCHHHHHHhccc-cceEEE
Confidence 8 777688899999999999995554 33334556677666665 443 3568899999998876 899999
Q ss_pred Ec-CCC-CCChhh---HHHHHHHHHHcCCEEEEeccccccccccCCCCCCC------CCceEEEeCCCCcCC--CCCceE
Q 018231 201 AG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPF------EYADVVTTTTHKSLR--GPRGAM 267 (359)
Q Consensus 201 l~-~~n-~g~~~~---l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~------~~~D~v~~s~~K~l~--gp~gG~ 267 (359)
++ |+| ||...+ +++|.++|+++++++|+|+++..-... +....++ ....+++.|++|.|+ |.+-|+
T Consensus 173 l~~P~NPTG~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~-~~~~~s~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~ 251 (389)
T PRK08068 173 LNYPNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFD-GQKPVSFLQTPGAKDVGIELYTLSKTFNMAGWRVAF 251 (389)
T ss_pred EECCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccC-CCCCcChhhCCCccCCEEEEecchhccCCccceeEe
Confidence 98 888 996665 567888899999999999997421111 1000010 124588899999874 333399
Q ss_pred EEEeC
Q 018231 268 IFFRK 272 (359)
Q Consensus 268 l~~~~ 272 (359)
++.++
T Consensus 252 ~~~~~ 256 (389)
T PRK08068 252 AVGNE 256 (389)
T ss_pred EecCH
Confidence 98766
No 81
>TIGR01364 serC_1 phosphoserine aminotransferase. This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).
Probab=99.83 E-value=1.4e-19 Score=170.90 Aligned_cols=255 Identities=13% Similarity=0.084 Sum_probs=162.2
Q ss_pred CCcHHHHHHHHhhhhccCCCC--CCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCC-hH-HHHHHHHhh
Q 018231 57 FTSVSVMQAVGSVMTNKYSEG--YPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSG-SP-SNFQVYTAL 132 (359)
Q Consensus 57 ~~~~~v~~al~~~~~~~~~~g--~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG-~~-a~~~~~~al 132 (359)
..|..|++++.+++.+..+.+ .....+ .+.++.+ +-+.+++.++++++.+.++ +|++++| +| ++.+++.++
T Consensus 2 ~~p~~v~~~~~~~~~~~~~~~~~~~~~~h-r~~~f~~-~~~~~~~~l~~l~~~~~~~---~v~~~~gsgT~a~ea~~~nl 76 (349)
T TIGR01364 2 ALPEEVLEQAQKELLNFNGTGMSVMEISH-RSKEFEA-VANEAESDLRELLNIPDNY---EVLFLQGGATGQFAAVPLNL 76 (349)
T ss_pred CCCHHHHHHHHHHHhCccCCCccccccCC-CchHHHH-HHHHHHHHHHHHhCCCCCc---eEEEEcCCchHHHHHHHHhc
Confidence 368899999999887521111 111111 1223333 4445889999999974332 4777766 55 999899999
Q ss_pred cCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccC-CCCCCCCHHHHHHHhhhhCCcEEEEc--CCCCCCh
Q 018231 133 LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLN-ESTGYIDYDQLEKSATLFRPKLIVAG--ASAYARL 209 (359)
Q Consensus 133 ~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~~~~d~e~l~~~i~~~~~k~v~l~--~~n~g~~ 209 (359)
+++||++++... +.++..+ ...+...|. +..+..+-. +....+|+++++ +++ ++++|.++ .+.||..
T Consensus 77 ~~~~~~~l~i~~---G~fg~r~---~~~a~~~g~-~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~v~~th~ETstGv~ 146 (349)
T TIGR01364 77 LAEGKVADYIVT---GAWSKKA---AKEAKKYGV-VNVVASGKEGNYTKIPDPSTWE--ISE-DAAYVHYCANETIHGVE 146 (349)
T ss_pred CCCCCeEEEEEC---CHHHHHH---HHHHHHhCC-cEEEeccccCCCCCCCCHHhcC--CCC-CCCEEEEcCCCCcccEe
Confidence 999999988762 2222211 123344555 444432211 122356777665 344 78988887 3337876
Q ss_pred hhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEeCCCCcCCCCCc-eEEEEeCCcchhccCCcchhhhH
Q 018231 210 YDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEINKQGKEVFYDY 288 (359)
Q Consensus 210 ~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~~~~g~~~~~~~ 288 (359)
.+ ++++.+++++++|++|++|..++++.. .|++++|+||+| ||+| |++++++++............++
T Consensus 147 ~~-----~l~~~~~~l~iVDavss~g~~~id~~~-----~d~~~~ssqK~l-gP~Glg~l~~s~~~~~~~~~~~~~~~~~ 215 (349)
T TIGR01364 147 FR-----ELPDVKNAPLVADMSSNILSRPIDVSK-----FGLIYAGAQKNI-GPAGLTVVIVRKDLLGRASRITPSMLNY 215 (349)
T ss_pred cc-----eecccCCCeEEEEccccccCccCCHHH-----ccEEEEeccccc-CCCceEEEEECHHHHhhcccCCCCcchH
Confidence 65 667778999999999999999998875 569999999988 5999 99999986532221111111121
Q ss_pred HHhhccccCCCCCCCCcHHHHHHHHHHHHHHhccccchhHhhhccccchhhh
Q 018231 289 EEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFV 340 (359)
Q Consensus 289 ~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~~l~~~~~~~ 340 (359)
...... ....||||+..++++.+||+++.++++++++.++.......+.
T Consensus 216 ~~~~~~---~~~~~Tp~~~~i~al~~al~~l~~~gG~e~i~~r~~~l~~~l~ 264 (349)
T TIGR01364 216 KIHAEN---DSMYNTPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQAKAQLLY 264 (349)
T ss_pred HHHHhc---CCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 111111 1224899999999999999999876456666655444443333
No 82
>PTZ00377 alanine aminotransferase; Provisional
Probab=99.83 E-value=6e-19 Score=173.99 Aligned_cols=197 Identities=14% Similarity=0.125 Sum_probs=134.7
Q ss_pred cHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHhhc-CCC
Q 018231 59 SVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALL-KPH 136 (359)
Q Consensus 59 ~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~al~-~~G 136 (359)
|..+++++.+.+...- . ....|+...+..++++++.+++.+..|.+.+. .+|++|+|++ ++..++.+++ +||
T Consensus 90 P~~~~~~~~~~~~~~~--~--~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~--~~I~it~Ga~~al~~~~~~l~~~~g 163 (481)
T PTZ00377 90 PADVVARAKEYLNAIG--G--GTGAYTDSAGYPFVRKAVAAFIERRDGVPKDP--SDIFLTDGASSGIKLLLQLLIGDPS 163 (481)
T ss_pred CHHHHHHHHHHHHhCC--C--cccCcCcccCCHHHHHHHHHHHHHhcCCCCCh--hhEEEcCCHHHHHHHHHHHhccCCC
Confidence 4477777766554311 0 11235555677888888888888877763221 2599999999 8887888988 799
Q ss_pred CeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhh-----CCcEEEEc-CCC-CCCh
Q 018231 137 DRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF-----RPKLIVAG-ASA-YARL 209 (359)
Q Consensus 137 d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~-----~~k~v~l~-~~n-~g~~ 209 (359)
|.|++++| .|+.+...+...|..++.+++..+ +++.+|+++|++.+++. ++|+++++ |+| ||..
T Consensus 164 D~Vlv~~P--------~y~~y~~~~~~~g~~~v~v~~~~~-~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~ 234 (481)
T PTZ00377 164 DGVMIPIP--------QYPLYSAAITLLGGKQVPYYLDEE-KGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQV 234 (481)
T ss_pred CEEEECCC--------CchhHHHHHHHcCCEEEEEEeccc-cCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcC
Confidence 99999994 444444455667777666654322 45789999999998742 68887776 888 9976
Q ss_pred hh---HHHHHHHHHHcCCEEEEeccccccccccCCCCCC-------CC-C-----ceEEEeCCCCcCC---CCCceEEEE
Q 018231 210 YD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP-------FE-Y-----ADVVTTTTHKSLR---GPRGAMIFF 270 (359)
Q Consensus 210 ~~---l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~-------~~-~-----~D~v~~s~~K~l~---gp~gG~l~~ 270 (359)
.+ +++|+++|++||++||+|+++..-....+..... +. . .-+++.|.+|.+. |.+.|++++
T Consensus 235 ~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~~~ 314 (481)
T PTZ00377 235 LTRDVMEEIIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGGYFEL 314 (481)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCceEEEEE
Confidence 65 7889999999999999999975322211100000 00 0 1267789999754 555599987
No 83
>PRK07337 aminotransferase; Validated
Probab=99.83 E-value=7.6e-19 Score=168.86 Aligned_cols=225 Identities=13% Similarity=0.094 Sum_probs=151.3
Q ss_pred ccccccChHHHHHHHHHHHH----hhcCceeeCCCCC--CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHH
Q 018231 25 APLEVVDPEIADIIEHEKAR----QWKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQ 98 (359)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~----~~~~i~l~~~~~~--~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~ 98 (359)
+++..+.++.+..+.+...+ ..+.++|..+++. +++.+.+++.+.+.... ..|+...+..++++++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~-------~~Y~~~~g~~~lr~~ia 77 (388)
T PRK07337 5 ARVDAIEPFYVMELAKEAQALERAGRDIIHMGIGEPDFTAPEPVVEAAARALRRGV-------TQYTSALGLAPLREAIA 77 (388)
T ss_pred hHhHhcCchHHHHHHHHHHHHHhcCCCEEEeCCcCCCCCCCHHHHHHHHHHHhcCC-------CCCCCCCCCHHHHHHHH
Confidence 33444455555544443332 2356888876653 57788899888765421 11333355677887788
Q ss_pred HHHHHHcCC--CCCCCceeEEECCChH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEeccc
Q 018231 99 KRALEAFRL--DPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL 175 (359)
Q Consensus 99 ~~~a~~~g~--~~~~~~~~v~~tsG~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 175 (359)
+++.+.+|+ +++ +|++|+|++ ++..++.+++++||+|++++++|+++.. .+...|.++..++ .
T Consensus 78 ~~~~~~~~~~~~~~----~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~--------~~~~~g~~~~~~~--~ 143 (388)
T PRK07337 78 AWYARRFGLDVAPE----RIVVTAGASAALLLACLALVERGDEVLMPDPSYPCNRH--------FVAAAEGRPVLVP--S 143 (388)
T ss_pred HHHHHHhCCCCChH----hEEEecCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHH--------HHHHcCCEEEEee--c
Confidence 888877776 443 599999999 8777888899999999999977765432 2334465565555 4
Q ss_pred CC-CCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChh---hHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCC-C
Q 018231 176 NE-STGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLY---DYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE-Y 248 (359)
Q Consensus 176 ~~-~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~---~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~-~ 248 (359)
+. +++.+|++++++.+++ ++++|+++ |+| ||... ++++|.++|+++++++|+|+++.. ....+....... +
T Consensus 144 ~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~-~~~~~~~~~~~~~~ 221 (388)
T PRK07337 144 GPAERFQLTAADVEAAWGE-RTRGVLLASPSNPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQG-LSYDAAPVSALSLG 221 (388)
T ss_pred CCccCCcCCHHHHHhhcCc-cceEEEEECCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEeccccc-cccCCCCcChhhcc
Confidence 42 4578999999999987 88998887 888 88654 477888999999999999999642 221111111111 1
Q ss_pred ce-EEEeCCCCcCC--CCCceEEEEeC
Q 018231 249 AD-VVTTTTHKSLR--GPRGAMIFFRK 272 (359)
Q Consensus 249 ~D-~v~~s~~K~l~--gp~gG~l~~~~ 272 (359)
.+ +++.|.+|.|+ |.+.|++++++
T Consensus 222 ~~vi~~~S~SK~~~~~G~RiG~~~~~~ 248 (388)
T PRK07337 222 DDVITINSFSKYFNMTGWRLGWLVVPE 248 (388)
T ss_pred CCEEEEEechhhcCCchhheeeeecCH
Confidence 23 56789999884 44449999876
No 84
>PRK06290 aspartate aminotransferase; Provisional
Probab=99.83 E-value=2.5e-18 Score=166.17 Aligned_cols=205 Identities=15% Similarity=0.109 Sum_probs=144.6
Q ss_pred cCceeeCCCCC--CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCC---CCCCceeEEECCC
Q 018231 47 KGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLD---PEKWGVNVQSLSG 121 (359)
Q Consensus 47 ~~i~l~~~~~~--~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~---~~~~~~~v~~tsG 121 (359)
+.++|..++++ +++.+++++.+.+..... ..|+. .+..++++++++++.+.+|.+ +++ +|++|+|
T Consensus 45 ~~i~L~~g~p~~~~~~~~~~~l~~~~~~~~~------~~Y~~-~G~~~lr~aia~~~~~~~g~~~~~~~~---~I~it~G 114 (410)
T PRK06290 45 ELIDMGVGEPDEMADESVVEVLCEEAKKPEN------RGYAD-NGIQEFKEAAARYMEKVFGVKDIDPVT---EVIHSIG 114 (410)
T ss_pred CeEEcCCCCCCCCCCHHHHHHHHHHHhCCCC------CCCCC-CCcHHHHHHHHHHHHHHcCCCcCCCcc---eEEEccC
Confidence 46888887775 577888888776543111 11232 446778888888888777754 432 4999999
Q ss_pred hH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCC-CCCCCCHHHHHHHhhhhCCcEE
Q 018231 122 SP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNE-STGYIDYDQLEKSATLFRPKLI 199 (359)
Q Consensus 122 ~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~-~~~~~d~e~l~~~i~~~~~k~v 199 (359)
++ ++..++.+++++||.|+++++.|+ .+...+...|.++..++ +++ .++.+|++++++.+.+ ++|+|
T Consensus 115 s~~al~~~~~~~~~~gd~Vlv~~P~y~--------~~~~~~~~~g~~v~~v~--~~~~~~~~~d~~~l~~~~~~-~~k~i 183 (410)
T PRK06290 115 SKPALAMLPSCFINPGDVTLMTVPGYP--------VTGTHTKYYGGEVYNLP--LLEENNFLPDLDSIPKDIKE-KAKLL 183 (410)
T ss_pred HHHHHHHHHHHhCCCCCEEEEeCCCCc--------cHHHHHHHcCCEEEEEe--cCCCcCCcCCHHHHHHhhcc-cceEE
Confidence 99 887788999999999999995444 33334555676665665 443 3567899999998876 89999
Q ss_pred EEc-CCC-CCChhh---HHHHHHHHHHcCCEEEEeccccccccccCC-CCCCC---CCceEEEeCCCCcCC--CCCceEE
Q 018231 200 VAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGV-IPSPF---EYADVVTTTTHKSLR--GPRGAMI 268 (359)
Q Consensus 200 ~l~-~~n-~g~~~~---l~~i~~la~~~~~~vivD~a~~~g~~~~~~-~~~~~---~~~D~v~~s~~K~l~--gp~gG~l 268 (359)
+++ |+| ||...+ +++|.++|++||++||+|+++......... ....+ ...++++.|.+|.++ |.+-|++
T Consensus 184 ~l~nP~NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~~~s~~~~~~~~~~~I~i~SfSK~~g~~GlRiG~i 263 (410)
T PRK06290 184 YLNYPNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGKPLSFLSVPGAKEVGVEIHSLSKAYNMTGWRLAFV 263 (410)
T ss_pred EEECCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCCCCcChhcCCCccccEEEEeechhhcCCchhheEeE
Confidence 998 888 996665 678888899999999999998643221100 00011 135699999999874 3333999
Q ss_pred EEeC
Q 018231 269 FFRK 272 (359)
Q Consensus 269 ~~~~ 272 (359)
+.++
T Consensus 264 i~~~ 267 (410)
T PRK06290 264 VGNE 267 (410)
T ss_pred EeCH
Confidence 9876
No 85
>PRK06225 aspartate aminotransferase; Provisional
Probab=99.82 E-value=9.8e-19 Score=167.62 Aligned_cols=218 Identities=14% Similarity=0.081 Sum_probs=145.8
Q ss_pred cChHHHHHHHHHHH---HhhcCceeeCCCC--CCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHH
Q 018231 30 VDPEIADIIEHEKA---RQWKGLELIPSEN--FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEA 104 (359)
Q Consensus 30 ~~~~~~~~~~~~~~---~~~~~i~l~~~~~--~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~ 104 (359)
+.+..|..++.... ...+.|+|..+++ ++++.+.+++.+.+..... ..|+...+..+ +|++++++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~------~~y~~~~g~~~----lr~~ia~~ 78 (380)
T PRK06225 9 VPPSGFKTSNEFFDYVFKDKEMIWMGQNTNHLGPHEEVREAMIRCIEEGEY------CKYPPPEGFPE----LRELILKD 78 (380)
T ss_pred cCcchhhhHHHHHHHHhhcCCeEEccCCCCCCCCCHHHHHHHHHHHhcCCC------CCCCCCcchHH----HHHHHHHh
Confidence 44444544444222 2245688887776 4688999999988764211 12233344444 45888889
Q ss_pred cCCCCCCCceeEEECCChH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCC
Q 018231 105 FRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYID 183 (359)
Q Consensus 105 ~g~~~~~~~~~v~~tsG~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d 183 (359)
+|++++ +|++|+|++ ++..++.+++.+||+|+++++.|.. +...+...|.+++.+++..+++++.+|
T Consensus 79 l~~~~~----~v~~~~g~t~al~~~~~~~~~~gd~vl~~~p~y~~--------~~~~~~~~g~~~~~v~~~~~~~~~~~d 146 (380)
T PRK06225 79 LGLDDD----EALITAGATESLYLVMRAFLSPGDNAVTPDPGYLI--------IDNFASRFGAEVIEVPIYSEECNYKLT 146 (380)
T ss_pred cCCCCC----cEEEeCCHHHHHHHHHHHhcCCCCEEEEcCCCCcc--------hHHHHHHhCceEEeeccccccCCccCC
Confidence 999875 499999999 8887888899999999999854432 222334556666555532222356899
Q ss_pred HHHHHHHhhhhCCcEEEEc-CCC-CCCh---hhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCC-CCceEEEeCCC
Q 018231 184 YDQLEKSATLFRPKLIVAG-ASA-YARL---YDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPF-EYADVVTTTTH 257 (359)
Q Consensus 184 ~e~l~~~i~~~~~k~v~l~-~~n-~g~~---~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~-~~~D~v~~s~~ 257 (359)
++++++.+++ ++++++++ |+| +|.. .++++|.++|+++|+++|+|+++.- ........... ....+++.|++
T Consensus 147 ~~~l~~~~~~-~~~~v~l~~p~NptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~-~~~~~~~~~~~~~~~~i~~~s~S 224 (380)
T PRK06225 147 PELVKENMDE-NTRLIYLIDPLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRD-FAREHTLAAEYAPEHTVTSYSFS 224 (380)
T ss_pred HHHHHhhcCC-CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCcEEEEehhHHH-HhccCCchhhcCCCCEEEEeech
Confidence 9999999987 89998877 877 8854 4588999999999999999998631 11100000000 12467788889
Q ss_pred CcCCCCCc---eEEEEeC
Q 018231 258 KSLRGPRG---AMIFFRK 272 (359)
Q Consensus 258 K~l~gp~g---G~l~~~~ 272 (359)
|++ |++| |++++++
T Consensus 225 K~~-g~~G~RiG~i~~~~ 241 (380)
T PRK06225 225 KIF-GMAGLRIGAVVATP 241 (380)
T ss_pred hhc-CCccceeEEEecCH
Confidence 988 4334 9999876
No 86
>PLN02187 rooty/superroot1
Probab=99.82 E-value=8.7e-19 Score=171.62 Aligned_cols=206 Identities=14% Similarity=0.089 Sum_probs=144.4
Q ss_pred hcCceeeCCCC------CCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCC--CCCCCceeEE
Q 018231 46 WKGLELIPSEN------FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRL--DPEKWGVNVQ 117 (359)
Q Consensus 46 ~~~i~l~~~~~------~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~--~~~~~~~~v~ 117 (359)
+..|+|..++. .+++++.+++.+.+..... ..|+...+..++++++.+++.+.++. +++ +|+
T Consensus 66 ~~vi~l~~Gdp~~~p~~~~~~~~~~~~~~~~~~~~~------~~Y~~~~G~~~lR~aiA~~~~~~~~~~~~~~----~I~ 135 (462)
T PLN02187 66 KTILPLGHGDPSVYPCFRTCIEAEDAVVDVLRSGKG------NSYGPGAGILPARRAVADYMNRDLPHKLTPE----DIF 135 (462)
T ss_pred CCeEECCCCCCCCCCCCCCCHHHHHHHHHHHhCCCC------CCCCCCCChHHHHHHHHHHHHHhcCCCCCcc----cEE
Confidence 35788876644 2467899999888765221 12333455677887777887776654 554 599
Q ss_pred ECCChH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCC
Q 018231 118 SLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRP 196 (359)
Q Consensus 118 ~tsG~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~ 196 (359)
+|+|++ ++..++.++++|||+|+++++.|+ .+...+...|.+++.+++..+ +++.+|++++++.+++ ++
T Consensus 136 it~G~~~al~~~~~~l~~pGd~Vlv~~P~y~--------~y~~~~~~~g~~~~~~~l~~~-~~~~~d~~~l~~~~~~-~~ 205 (462)
T PLN02187 136 LTAGCNQGIEIVFESLARPNANILLPRPGFP--------HYDARAAYSGLEVRKFDLLPE-KEWEIDLEGIEAIADE-NT 205 (462)
T ss_pred EeCCHHHHHHHHHHHhcCCCCEEEEeCCCCc--------cHHHHHHHcCCEEEEEeCccc-cCCccCHHHHHHhcCC-Cc
Confidence 999999 888899999999999999995554 333345566777766664322 5689999999998877 78
Q ss_pred cEEEEc-CCC-CCChhh---HHHHHHHHHHcCCEEEEeccccccccccCCCCCCCC---C--ceEEEeCCCCcCC--CCC
Q 018231 197 KLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE---Y--ADVVTTTTHKSLR--GPR 264 (359)
Q Consensus 197 k~v~l~-~~n-~g~~~~---l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~---~--~D~v~~s~~K~l~--gp~ 264 (359)
++++++ |+| ||...+ +++|.++|++||++||+|+++..-... +....++. . --+++.|++|.|+ |.+
T Consensus 206 ~~v~i~nP~NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~-~~~~~s~~~~~~~~~vi~l~SfSK~f~~pGlR 284 (462)
T PLN02187 206 VAMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFG-DNPFVSMGKFASIVPVLTLAGISKGWVVPGWK 284 (462)
T ss_pred EEEEEeCCCCCCCCccCHHHHHHHHHHHHHCCCEEEEeccccccccC-CCCceeHHHhccCCcEEEEecchhhcCCccce
Confidence 888887 888 996654 778889999999999999997532221 11111111 1 1377889999864 334
Q ss_pred ceEEEEeC
Q 018231 265 GAMIFFRK 272 (359)
Q Consensus 265 gG~l~~~~ 272 (359)
-|++++.+
T Consensus 285 iG~~v~~~ 292 (462)
T PLN02187 285 IGWIALND 292 (462)
T ss_pred eEEEEecC
Confidence 49999854
No 87
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=99.82 E-value=1.1e-18 Score=167.80 Aligned_cols=232 Identities=17% Similarity=0.154 Sum_probs=157.1
Q ss_pred chhccccccccChHHHHHHHHHHHHhhcCceeeCCCCC--CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHH
Q 018231 20 PKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLC 97 (359)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~--~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~ 97 (359)
++.|++++.......+..+.+......+.|+|..+.++ +++.+.+++.+.+.... ..|+...+..++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~-------~~Y~~~~g~~~lr~~i 76 (391)
T PRK07309 4 TKRFNKQLDKIEVSLIRQFDQSISDIPGILKLTLGEPDFTTPDHVKEAAKRAIDANQ-------SHYTGMAGLLELRQAA 76 (391)
T ss_pred hhHHHhhhhhcCccHHHHHHHHHHhcCCeEEcCCCCCCCCCCHHHHHHHHHHHhcCC-------CCCCCCCCcHHHHHHH
Confidence 34445555555555555555533333467888876654 46778888887765422 1233345567888888
Q ss_pred HHHHHHHcCCC--CCCCceeEEECCChH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecc
Q 018231 98 QKRALEAFRLD--PEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYR 174 (359)
Q Consensus 98 ~~~~a~~~g~~--~~~~~~~v~~tsG~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 174 (359)
++++...+|.. +++ +|++|+|++ ++.+++.+++++||+|++.++.|.++. ..+...|.++..++
T Consensus 77 a~~~~~~~~~~~~~~~---~i~it~G~~~al~~~~~~~~~~gd~vl~~~p~y~~~~--------~~~~~~g~~~~~~~-- 143 (391)
T PRK07309 77 ADFVKEKYNLDYAPEN---EILVTIGATEALSASLTAILEPGDKVLLPAPAYPGYE--------PIVNLVGAEIVEID-- 143 (391)
T ss_pred HHHHHHHhCCCCCCCC---cEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCCcchH--------HHHHHcCCEEEEEe--
Confidence 88888777763 222 599999999 887788899999999999996665442 23445676665554
Q ss_pred cCCCCCCCCHHHHHHHhhh--hCCcEEEEc-CCC-CCChh---hHHHHHHHHHHcCCEEEEeccccccccccCCCCCCC-
Q 018231 175 LNESTGYIDYDQLEKSATL--FRPKLIVAG-ASA-YARLY---DYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPF- 246 (359)
Q Consensus 175 ~~~~~~~~d~e~l~~~i~~--~~~k~v~l~-~~n-~g~~~---~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~- 246 (359)
.+.+++.+|++++++.+++ .++++++++ |+| ||... ++++|.++|++||+++|+|++++.-... +....++
T Consensus 144 ~~~~~~~~d~~~l~~~~~~~~~~~~~i~l~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~-~~~~~~~~ 222 (391)
T PRK07309 144 TTENDFVLTPEMLEKAILEQGDKLKAVILNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYT-GEPHVSIA 222 (391)
T ss_pred cCCcCCcCCHHHHHHHhhccCCCeEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeC-CCCCCCHH
Confidence 4434568999999998864 258899888 888 88654 5888999999999999999998643321 1111111
Q ss_pred ---CCceEEEeCCCCcCC--CCCceEEEEeC
Q 018231 247 ---EYADVVTTTTHKSLR--GPRGAMIFFRK 272 (359)
Q Consensus 247 ---~~~D~v~~s~~K~l~--gp~gG~l~~~~ 272 (359)
..-.+++.|.+|.++ |.+-|+++.++
T Consensus 223 ~~~~~~~i~~~S~SK~~g~~GlRvG~~v~~~ 253 (391)
T PRK07309 223 EYLPDQTILINGLSKSHAMTGWRIGLIFAPA 253 (391)
T ss_pred HhccCCEEEEecChhhccCccceeEEEEeCH
Confidence 123488999999874 33339999887
No 88
>PRK07682 hypothetical protein; Validated
Probab=99.82 E-value=7.9e-19 Score=168.13 Aligned_cols=207 Identities=15% Similarity=0.107 Sum_probs=144.8
Q ss_pred hcCceeeCCCCC--CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCC--CCCCCceeEEECCC
Q 018231 46 WKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRL--DPEKWGVNVQSLSG 121 (359)
Q Consensus 46 ~~~i~l~~~~~~--~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~--~~~~~~~~v~~tsG 121 (359)
.+.|+|..+++. +++.+.+++.+.+...+ ..|+...+..++++++.+++.+.+|. ++++ +|++|+|
T Consensus 20 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~-------~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~---~i~~t~G 89 (378)
T PRK07682 20 EGVISLGVGEPDFVTPWNVREASIRSLEQGY-------TSYTANAGLLELRQEIAKYLKKRFAVSYDPND---EIIVTVG 89 (378)
T ss_pred CCeEEeCCCCCCCCCCHHHHHHHHHHHhcCC-------CCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCC---cEEEeCC
Confidence 356899887774 46677888877665421 11333355678888888888887776 3432 4999999
Q ss_pred hH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEE
Q 018231 122 SP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIV 200 (359)
Q Consensus 122 ~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~ 200 (359)
++ ++..++.++++|||+|+++++.|+.+ ...+...|..+..++...+ +++.+|++++++.+.+ ++++++
T Consensus 90 ~~~al~~~~~~l~~~gd~vl~~~p~y~~~--------~~~~~~~g~~~~~~~~~~~-~~~~~d~~~l~~~~~~-~~~~v~ 159 (378)
T PRK07682 90 ASQALDVAMRAIINPGDEVLIVEPSFVSY--------APLVTLAGGVPVPVATTLE-NEFKVQPAQIEAAITA-KTKAIL 159 (378)
T ss_pred hHHHHHHHHHHhCCCCCEEEEeCCCchhh--------HHHHHHcCCEEEEeecCCc-cCCCCCHHHHHhhcCc-ccEEEE
Confidence 99 88878889999999999999555432 2234445655545543222 3578999999999887 899988
Q ss_pred Ec-CCC-CCChh---hHHHHHHHHHHcCCEEEEeccccccccccCC---CCC-CCCCceEEEeCCCCcCCCC--CceEEE
Q 018231 201 AG-ASA-YARLY---DYERIRKVCNKQKAIMLADMAHISGLVAAGV---IPS-PFEYADVVTTTTHKSLRGP--RGAMIF 269 (359)
Q Consensus 201 l~-~~n-~g~~~---~l~~i~~la~~~~~~vivD~a~~~g~~~~~~---~~~-~~~~~D~v~~s~~K~l~gp--~gG~l~ 269 (359)
++ |+| ||... ++++|.++|++|++++|+|+++......... ... +.....+++.|++|.|+.| +-|+++
T Consensus 160 ~~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~ 239 (378)
T PRK07682 160 LCSPNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEAYTSFASIKGMRERTILISGFSKGFAMTGWRLGFIA 239 (378)
T ss_pred EECCCCCcCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCCCCChhhcccccCCEEEEecCcccccChhhhhhhhh
Confidence 87 888 88655 4888999999999999999998644322110 000 1112468999999988533 239999
Q ss_pred EeC
Q 018231 270 FRK 272 (359)
Q Consensus 270 ~~~ 272 (359)
+++
T Consensus 240 ~~~ 242 (378)
T PRK07682 240 APV 242 (378)
T ss_pred cCH
Confidence 877
No 89
>PRK06207 aspartate aminotransferase; Provisional
Probab=99.82 E-value=9.2e-19 Score=169.10 Aligned_cols=208 Identities=12% Similarity=0.090 Sum_probs=144.8
Q ss_pred cCceeeCCCC---CCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCC--CCCCCceeEEECCC
Q 018231 47 KGLELIPSEN---FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRL--DPEKWGVNVQSLSG 121 (359)
Q Consensus 47 ~~i~l~~~~~---~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~--~~~~~~~~v~~tsG 121 (359)
+.++|..+.. ++++.+.+++.+.+......+ |+...+..++++++++++++++|. ++++ +|++|+|
T Consensus 40 ~~i~l~~g~~~~~~p~~~~~~~~~~~~~~~~~~~------Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~---~I~it~G 110 (405)
T PRK06207 40 RPVDFSHGDVDAHEPTPGAFELFSAGVERGGVQA------YTEYRGDADIRELLAARLAAFTGAPVDAAD---ELIITPG 110 (405)
T ss_pred CceecCCcCCCCCCCCHHHHHHHHHHHhcCCCcc------CCCCCCCHHHHHHHHHHHHHHhCCCCCCCC---CEEEeCC
Confidence 4577875443 366788888888765421112 333355677888899999999896 4412 4999999
Q ss_pred hH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEeccc--CCCCCCCCHHHHHHHhhhhCCcE
Q 018231 122 SP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL--NESTGYIDYDQLEKSATLFRPKL 198 (359)
Q Consensus 122 ~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~~~~d~e~l~~~i~~~~~k~ 198 (359)
++ ++..++.++++|||+|+++++.|++ +...+...|.++..++++. ..+++.+|+++|++.+++ ++++
T Consensus 111 a~~al~~~~~~l~~~Gd~Vlv~~P~y~~--------~~~~~~~~g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~~-~~k~ 181 (405)
T PRK06207 111 TQGALFLAVAATVARGDKVAIVQPDYFA--------NRKLVEFFEGEMVPVQLDYLSADKRAGLDLDQLEEAFKA-GVRV 181 (405)
T ss_pred cHHHHHHHHHHhcCCCCEEEEeCCCchh--------HHHHHHHcCCEEEEEeccccCcccCCCcCHHHHHHhhhh-cCeE
Confidence 99 8887899999999999999955543 3334455676665565431 113578999999999887 7998
Q ss_pred EEEc-CCC-CCChhh---HHHHHHHHHHcCCEEEEeccccccccccC----CCCCCCC-CceEEEeCCCCcCC--CCCce
Q 018231 199 IVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAG----VIPSPFE-YADVVTTTTHKSLR--GPRGA 266 (359)
Q Consensus 199 v~l~-~~n-~g~~~~---l~~i~~la~~~~~~vivD~a~~~g~~~~~----~~~~~~~-~~D~v~~s~~K~l~--gp~gG 266 (359)
++++ |+| ||...+ +++|.++|++||++||+|++++.-..... ....... ..-+++.|++|.++ |.+.|
T Consensus 182 v~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~lpGlRiG 261 (405)
T PRK06207 182 FLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALPIDPENVITIMGPSKTESLSGYRLG 261 (405)
T ss_pred EEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCchhcCCCCcCcEEEEecchhhccCcccceE
Confidence 8887 888 996665 77888899999999999999764222111 0000100 12388999999875 44459
Q ss_pred EEEEeC
Q 018231 267 MIFFRK 272 (359)
Q Consensus 267 ~l~~~~ 272 (359)
+++.++
T Consensus 262 ~ii~~~ 267 (405)
T PRK06207 262 VAFGSP 267 (405)
T ss_pred EEEcCH
Confidence 998876
No 90
>PRK09082 methionine aminotransferase; Validated
Probab=99.82 E-value=5.6e-19 Score=169.65 Aligned_cols=229 Identities=12% Similarity=0.111 Sum_probs=158.9
Q ss_pred cccccccChHHHHHHHHHHHHhhcCceeeCCCCC--CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHH
Q 018231 24 NAPLEVVDPEIADIIEHEKARQWKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRA 101 (359)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~--~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~ 101 (359)
++++..+...++..+.... +....++|..|.+. +++.+.+++.+.+.... .+ |+...+..++++++.+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~-~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~-~~------Y~~~~G~~~lr~~~a~~l 80 (386)
T PRK09082 9 QSKLPNVGTTIFTVMSALA-AEHGAINLSQGFPDFDGPPYLVEALAYAMAAGH-NQ------YPPMTGVAALREAIAAKT 80 (386)
T ss_pred hhHhhccCccHHHHHHHHH-hhCCEEEecCCCCCCCCCHHHHHHHHHHHHcCC-CC------CCCCCCcHHHHHHHHHHH
Confidence 4455556666776666543 23456888876653 46888888888765422 12 233355677888888999
Q ss_pred HHHcCCCCCCCceeEEECCChH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCC
Q 018231 102 LEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTG 180 (359)
Q Consensus 102 a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~ 180 (359)
.+++|.+.+.- .+|++|+|++ ++..++.++++|||+|+++++.|+++. ..+...|.++..++ .+.+++
T Consensus 81 ~~~~~~~~~~~-~~i~~t~G~~~al~~~~~~~~~~gd~Vli~~p~y~~~~--------~~~~~~g~~~~~~~--~~~~~~ 149 (386)
T PRK09082 81 ARLYGRQYDAD-SEITVTAGATEALFAAILALVRPGDEVIVFDPSYDSYA--------PAIELAGGRAVRVA--LQPPDF 149 (386)
T ss_pred HHHhCCCCCCC-CcEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCCchhhH--------HHHHHcCCEEEEEe--cCcccc
Confidence 99888743210 1499999998 888788899999999999996665442 23445566665554 443567
Q ss_pred CCCHHHHHHHhhhhCCcEEEEc-CCC-CCCh---hhHHHHHHHHHHcCCEEEEeccccccccccCCCCC-----CCCCce
Q 018231 181 YIDYDQLEKSATLFRPKLIVAG-ASA-YARL---YDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPS-----PFEYAD 250 (359)
Q Consensus 181 ~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~---~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~-----~~~~~D 250 (359)
.+|++++++.+++ ++++++++ ++| ||.. .++++|.++|++||+++|+|++++........... ......
T Consensus 150 ~~d~~~l~~~~~~-~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~ 228 (386)
T PRK09082 150 RVDWQRFAAAISP-RTRLIILNTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRERA 228 (386)
T ss_pred cCCHHHHHHhcCc-cceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCcE
Confidence 8999999999987 89999887 778 8854 67889999999999999999997543321110000 011246
Q ss_pred EEEeCCCCcCC--CCCceEEEEeC
Q 018231 251 VVTTTTHKSLR--GPRGAMIFFRK 272 (359)
Q Consensus 251 ~v~~s~~K~l~--gp~gG~l~~~~ 272 (359)
+++.|++|.++ |.+.|++++++
T Consensus 229 i~~~S~SK~~~~~G~RiG~iv~~~ 252 (386)
T PRK09082 229 FVVSSFGKTYHVTGWKVGYCVAPA 252 (386)
T ss_pred EEEeechhhccchhhhhhhhhCCH
Confidence 88999999874 33349999876
No 91
>PLN02368 alanine transaminase
Probab=99.82 E-value=1.8e-18 Score=166.42 Aligned_cols=174 Identities=15% Similarity=0.138 Sum_probs=124.3
Q ss_pred cCCchhHHHHHHHHHHHHHHHcCC--CCCCCceeEEECCChH-HHHHHHHhhc-CCCCeeeecCCCCCcccCcccccccc
Q 018231 84 YGGNEYIDMAESLCQKRALEAFRL--DPEKWGVNVQSLSGSP-SNFQVYTALL-KPHDRIMALDLPHGGHLSHGYQTDTK 159 (359)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~a~~~g~--~~~~~~~~v~~tsG~~-a~~~~~~al~-~~Gd~Vl~~~~~~~~~~~~~~~~~~~ 159 (359)
|+...+..++++++.+++.+.+|. +++ +|++|+|++ ++..++.+++ +|||+|++++ |.|+.+..
T Consensus 103 Y~~~~G~~~LR~aia~~~~~~~g~~~~~~----~I~it~Ga~~al~~~~~~l~~~pGd~Vli~~--------P~Y~~y~~ 170 (407)
T PLN02368 103 YSDSRGLPGVRKEVAEFIERRDGYPSDPE----LIFLTDGASKGVMQILNAVIRGEKDGVLVPV--------PQYPLYSA 170 (407)
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCCChh----hEEEcccHHHHHHHHHHHHcCCCCCEEEEeC--------CCCccHHH
Confidence 455566778888888998888785 444 599999999 8877888887 7999999999 55555554
Q ss_pred ceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhh-----CCcEEEEc-CCC-CCChh---hHHHHHHHHHHcCCEEEEe
Q 018231 160 KISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF-----RPKLIVAG-ASA-YARLY---DYERIRKVCNKQKAIMLAD 229 (359)
Q Consensus 160 ~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~-----~~k~v~l~-~~n-~g~~~---~l~~i~~la~~~~~~vivD 229 (359)
.+...|.++..+++..+ +++.+|++++++.+++. ++|+++++ |+| ||.+. .+++|+++|++||++||+|
T Consensus 171 ~~~~~g~~~v~v~~~~~-~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~II~D 249 (407)
T PLN02368 171 TISLLGGTLVPYYLEES-ENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVLLGD 249 (407)
T ss_pred HHHHcCCEEEEEecccc-cCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCCEEEEE
Confidence 56667776655654322 45789999999988641 58877777 888 99655 4667888899999999999
Q ss_pred ccccccccccCCCCCC-------C----C--CceEEEeCCCCcCC---CCCceEEEE
Q 018231 230 MAHISGLVAAGVIPSP-------F----E--YADVVTTTTHKSLR---GPRGAMIFF 270 (359)
Q Consensus 230 ~a~~~g~~~~~~~~~~-------~----~--~~D~v~~s~~K~l~---gp~gG~l~~ 270 (359)
+++..-.........+ + . ..-+++.|++|.|. |.+.|++++
T Consensus 250 E~Y~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~ 306 (407)
T PLN02368 250 EVYQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEM 306 (407)
T ss_pred ccccccccCCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEE
Confidence 9975432211000000 0 0 12377899999873 555599986
No 92
>PRK07777 aminotransferase; Validated
Probab=99.82 E-value=1.7e-18 Score=166.33 Aligned_cols=227 Identities=11% Similarity=0.111 Sum_probs=154.0
Q ss_pred cccccChHHHHHHHHHHHHhhcCceeeCCCC--CCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHH
Q 018231 26 PLEVVDPEIADIIEHEKARQWKGLELIPSEN--FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALE 103 (359)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~--~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~ 103 (359)
+++.+.+.++..+..... ....++|..+.. ..++.+.+++.+.+.... ..|+...+..++++++.+++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~-~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~-------~~Y~~~~g~~~lr~~ia~~~~~ 76 (387)
T PRK07777 5 RLRPFGTTIFAEMSALAV-RTGAVNLGQGFPDEDGPPEMLEAAQEAIAGGV-------NQYPPGPGIPELRAAIAAQRRR 76 (387)
T ss_pred hhhhcCccHHHHHHHHHh-hCCeEEccCCCCCCCCCHHHHHHHHHHHhcCC-------CCCCCCCCCHHHHHHHHHHHHH
Confidence 345566666766666543 346788876543 345667777777665421 1234345567788778888888
Q ss_pred HcCCC--CCCCceeEEECCChH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCC
Q 018231 104 AFRLD--PEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTG 180 (359)
Q Consensus 104 ~~g~~--~~~~~~~v~~tsG~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~ 180 (359)
.+|.+ +++ +|++|+|++ ++.+++.+++++||+|+++.+.|+++ ...+...|..+..+++..+..++
T Consensus 77 ~~g~~~~~~~---~i~~t~G~~~al~~~~~~~~~~gd~vli~~p~y~~~--------~~~~~~~g~~~~~~~~~~~~~~~ 145 (387)
T PRK07777 77 RYGLEYDPDT---EVLVTVGATEAIAAAVLGLVEPGDEVLLIEPYYDSY--------AAVIAMAGAHRVPVPLVPDGRGF 145 (387)
T ss_pred HhCCCCCCCC---cEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhh--------HHHHHHCCCEEEEeecCCccCCC
Confidence 88874 321 499999999 88878889999999999998655543 22334456656555532221256
Q ss_pred CCCHHHHHHHhhhhCCcEEEEc-CCC-CCChh---hHHHHHHHHHHcCCEEEEecccccccccc----CCCCCC-CCCce
Q 018231 181 YIDYDQLEKSATLFRPKLIVAG-ASA-YARLY---DYERIRKVCNKQKAIMLADMAHISGLVAA----GVIPSP-FEYAD 250 (359)
Q Consensus 181 ~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~---~l~~i~~la~~~~~~vivD~a~~~g~~~~----~~~~~~-~~~~D 250 (359)
.+|++++++.+.+ ++++|+++ ++| ||... ++++|.++|+++++++|+|++++...... .+...+ ..+.+
T Consensus 146 ~~d~~~l~~~~~~-~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~ 224 (387)
T PRK07777 146 ALDLDALRAAVTP-RTRALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRERT 224 (387)
T ss_pred cCCHHHHHHhcCc-ccEEEEEcCCCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCCCcCcE
Confidence 7999999999887 89999988 777 88554 58889999999999999999985322211 111111 12367
Q ss_pred EEEeCCCCcCCCC--CceEEEEeC
Q 018231 251 VVTTTTHKSLRGP--RGAMIFFRK 272 (359)
Q Consensus 251 ~v~~s~~K~l~gp--~gG~l~~~~ 272 (359)
+++.|++|.|+.| +-|+++.++
T Consensus 225 i~~~S~SK~~g~~GlRiG~~~~~~ 248 (387)
T PRK07777 225 VTISSAAKTFNVTGWKIGWACGPA 248 (387)
T ss_pred EEEeechhhccCcCceeEEEecCH
Confidence 9999999988533 239988876
No 93
>PRK05764 aspartate aminotransferase; Provisional
Probab=99.82 E-value=1.7e-18 Score=166.60 Aligned_cols=229 Identities=15% Similarity=0.118 Sum_probs=154.4
Q ss_pred ccccccccChHHHHHHHHHHHH----hhcCceeeCCCCC--CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHH
Q 018231 23 LNAPLEVVDPEIADIIEHEKAR----QWKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESL 96 (359)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~----~~~~i~l~~~~~~--~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~ 96 (359)
+++++..+.+..+..+....++ ....++|..+++. +++.+.+++.+.+.+.. ..|+...+...+++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------~~Y~~~~g~~~lr~~ 76 (393)
T PRK05764 4 LSKRVSRVTPSATLAVTAKAKELKAQGRDVISLGAGEPDFDTPEHIKEAAIEALDDGK-------TKYTPAAGIPELREA 76 (393)
T ss_pred hhhhhhhcCchHHHHHHHHHHHHHhccCCEEEeCCCCCCCCCCHHHHHHHHHHHhcCC-------CCcCCCCChHHHHHH
Confidence 4556666666665554433222 2356788766654 46888888888775421 113333556777777
Q ss_pred HHHHHHHHcCC--CCCCCceeEEECCChH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEec
Q 018231 97 CQKRALEAFRL--DPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPY 173 (359)
Q Consensus 97 ~~~~~a~~~g~--~~~~~~~~v~~tsG~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~ 173 (359)
+.+++.+.+|. +++ +|++|+|++ ++..++.+++++||.|+++++.|.++ ...+...|.++..++.
T Consensus 77 ia~~~~~~~~~~~~~~----~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~y~~~--------~~~~~~~g~~~~~~~~ 144 (393)
T PRK05764 77 IAAKLKRDNGLDYDPS----QVIVTTGAKQALYNAFMALLDPGDEVIIPAPYWVSY--------PEMVKLAGGVPVFVPT 144 (393)
T ss_pred HHHHHHHHhCCCCCHH----HEEEeCCcHHHHHHHHHHhcCCCCEEEecCCCCcch--------HHHHHHcCCEEEEEec
Confidence 77777777664 443 599999998 88778888999999999999666543 2234455766666654
Q ss_pred ccCCCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChh---hHHHHHHHHHHcCCEEEEeccccccccccC----CCCC
Q 018231 174 RLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLY---DYERIRKVCNKQKAIMLADMAHISGLVAAG----VIPS 244 (359)
Q Consensus 174 ~~~~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~---~l~~i~~la~~~~~~vivD~a~~~g~~~~~----~~~~ 244 (359)
..+ +++.+|++++++.+++ ++++++++ |+| +|.+. ++++|.++|++||+++++|++++....... ....
T Consensus 145 ~~~-~~~~~d~~~l~~~l~~-~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~ 222 (393)
T PRK05764 145 GEE-NGFKLTVEQLEAAITP-KTKALILNSPSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASL 222 (393)
T ss_pred Ccc-cCCcCCHHHHHHhhCc-cceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHc
Confidence 222 4578999999999976 88998887 877 88654 588899999999999999999753322110 0000
Q ss_pred --CCCCceEEEeCCCCcCCCC--CceEEEEeC
Q 018231 245 --PFEYADVVTTTTHKSLRGP--RGAMIFFRK 272 (359)
Q Consensus 245 --~~~~~D~v~~s~~K~l~gp--~gG~l~~~~ 272 (359)
...+.++++.|++|.++.| +.|+++.++
T Consensus 223 ~~~~~~~~i~~~s~SK~~~~~G~RiG~i~~~~ 254 (393)
T PRK05764 223 SPELRDRTITVNGFSKAYAMTGWRLGYAAGPK 254 (393)
T ss_pred CCCCcCCEEEEecCcccccCccceeEEEecCH
Confidence 1113678999999987433 238888766
No 94
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=99.82 E-value=8.9e-19 Score=167.91 Aligned_cols=185 Identities=21% Similarity=0.214 Sum_probs=134.5
Q ss_pred CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhh-cCCC
Q 018231 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL-LKPH 136 (359)
Q Consensus 58 ~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al-~~~G 136 (359)
.+++.++++.+.+.+.+ +..+ ....+ +++.+++++|.+. .+++++|+.++..++.++ ++||
T Consensus 8 ~~~~~~~~v~~~~~~~~--------~~~g-~~~~~----le~~la~~~g~~~-----~v~~~sgt~al~~~l~al~~~~G 69 (380)
T TIGR03588 8 IDQDDIDAVVEVLKSDF--------LTQG-PTVPA----FEEALAEYVGAKY-----AVAFNSATSALHIACLALGVGPG 69 (380)
T ss_pred CCHHHHHHHHHHHhcCC--------ccCC-hhHHH----HHHHHHHHHCCCe-----EEEEcCHHHHHHHHHHHcCCCCC
Confidence 45566777877776522 1111 23444 4478889999864 366776666888788888 8999
Q ss_pred CeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhh----hhCCcEEEEcCCCCCChhhH
Q 018231 137 DRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSAT----LFRPKLIVAGASAYARLYDY 212 (359)
Q Consensus 137 d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~----~~~~k~v~l~~~n~g~~~~l 212 (359)
|+|++++++|.+... .+...|++++.++ ++++++.+|++++++.++ + +|++|+++. .+|...++
T Consensus 70 d~Viv~~~~~~~~~~--------~~~~~G~~~~~~~--~~~~~~~~d~~~l~~~i~~~~~~-~t~~v~~~~-~~G~~~~~ 137 (380)
T TIGR03588 70 DRVWTTPITFVATAN--------CALYCGAKVDFVD--IDPDTGNIDEDALEKKLAAAKGK-LPKAIVPVD-FAGKSVDM 137 (380)
T ss_pred CEEEeCCcchHHHHH--------HHHHcCCEEEEEe--cCCCcCCcCHHHHHHHhhcccCC-CceEEEEeC-CCCccCCH
Confidence 999999977765532 3344576665554 554567899999999998 5 788887542 27888899
Q ss_pred HHHHHHHHHcCCEEEEeccccccccccCCCCCCC-CCceEEEeCCC--CcCCCCCceEEEEeCC
Q 018231 213 ERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPF-EYADVVTTTTH--KSLRGPRGAMIFFRKG 273 (359)
Q Consensus 213 ~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~-~~~D~v~~s~~--K~l~gp~gG~l~~~~~ 273 (359)
++|.++|++||++||+|++|++|... +..+.+. ...|+.++|+| |++..+.||+++++++
T Consensus 138 ~~i~~l~~~~~~~lI~D~a~a~g~~~-~~~~~g~~~~~d~~~~S~~~~K~~~~~~GG~v~~~~~ 200 (380)
T TIGR03588 138 QAIAALAKKHGLKIIEDASHALGAEY-GGKPVGNCRYADATVFSFHPVKIITTAEGGAVTTNDE 200 (380)
T ss_pred HHHHHHHHHcCCEEEEECCCcccCcc-CCEeCCCccccceEEEecCCCCcccccCceEEEECCH
Confidence 99999999999999999999998763 3233331 12499999987 8998888899998774
No 95
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=99.82 E-value=1.2e-18 Score=165.42 Aligned_cols=234 Identities=18% Similarity=0.140 Sum_probs=153.3
Q ss_pred cCceeeCCCC---CCcHHHHHHHHhhhhccCCCCCCCCcc-cCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCCh
Q 018231 47 KGLELIPSEN---FTSVSVMQAVGSVMTNKYSEGYPGARY-YGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGS 122 (359)
Q Consensus 47 ~~i~l~~~~~---~~~~~v~~al~~~~~~~~~~g~~~~~~-~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~ 122 (359)
+.|+|..+.+ +.++.+++++.+.+.. +..++..... ++...... .+++.++++++.+. .|++++|+
T Consensus 17 ~~id~~~~~~~g~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~g~~~~~~----~l~~~la~~~~~~~-----~i~~~~G~ 86 (360)
T TIGR00858 17 RLLNFSSNDYLGLASHPEVIQAAQQGAEQ-YGAGSTASRLVSGNSPLHE----ELEEELAEWKGTEA-----ALLFSSGY 86 (360)
T ss_pred eEEecccCCcccCCCCHHHHHHHHHHHHh-cCCCCCCcCcccCCcHHHH----HHHHHHHHHhCCCC-----EEEECchH
Confidence 4578887753 2468999999998864 4333322211 12112233 35688888888532 59999997
Q ss_pred HHHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhh---CCcEE
Q 018231 123 PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF---RPKLI 199 (359)
Q Consensus 123 ~a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~---~~k~v 199 (359)
.++..++.++++|||+|++.++.|++... .+...|.++..++ .+|++++++.+++. +++++
T Consensus 87 ~~~~~~l~~~~~~gd~v~~~~~~~~~~~~--------~~~~~g~~~~~~~--------~~d~~~l~~~~~~~~~~~~~~v 150 (360)
T TIGR00858 87 LANVGVISALVGKGDLILSDALNHASLID--------GCRLSGARVRRYR--------HNDVEHLERLLEKNRGERRKLI 150 (360)
T ss_pred HHHHHHHHHhCCCCCEEEEEccccHHHHH--------HHHhcCCceEEec--------CCCHHHHHHHHHHcccCCCeEE
Confidence 76665778889999999999876665432 2334455444332 24889999988752 46777
Q ss_pred EEc-CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCC----CCCCC--CCceEEEeCCCCcCCCCCceEEEEe
Q 018231 200 VAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGV----IPSPF--EYADVVTTTTHKSLRGPRGAMIFFR 271 (359)
Q Consensus 200 ~l~-~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~----~~~~~--~~~D~v~~s~~K~l~gp~gG~l~~~ 271 (359)
+++ +.| +|...++++|.++|+++|+++|+|++|+.|...... ...++ .+.|+++.|++|+|+ +.||+++.+
T Consensus 151 ~~~~~~~~~G~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~-~~gG~~~~~ 229 (360)
T TIGR00858 151 VTDGVFSMDGDIAPLPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALG-SYGAYVAGS 229 (360)
T ss_pred EEeCCccCCCCCcCHHHHHHHHHHcCcEEEEECcccccCcCCCCCchHHhcCCCccCCcEEEEechhhhh-ccCcEEEcC
Confidence 766 444 788899999999999999999999999877554221 00111 147899999999885 467888877
Q ss_pred CCcchhccCCcchhhhHHHhhccccCCCCC-CCCcHHHHHHHHHHHHHHhc
Q 018231 272 KGVKEINKQGKEVFYDYEEKINQAVFPGLQ-GGPHNHTITGLAVALKQVCT 321 (359)
Q Consensus 272 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-gt~~~~~i~al~~Al~~~~~ 321 (359)
+ ++.+.+.....+... ++.+...++|+.+|++.+..
T Consensus 230 ~--------------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~ 266 (360)
T TIGR00858 230 Q--------------ALIDYLINRARTLIFSTALPPAVAAAALAALELIQE 266 (360)
T ss_pred H--------------HHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhh
Confidence 6 444444322222222 33455667777788876653
No 96
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=99.82 E-value=1.6e-18 Score=166.99 Aligned_cols=235 Identities=18% Similarity=0.221 Sum_probs=154.9
Q ss_pred hcCceeeCCCCC---Cc----HHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEE
Q 018231 46 WKGLELIPSENF---TS----VSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQS 118 (359)
Q Consensus 46 ~~~i~l~~~~~~---~~----~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~ 118 (359)
.+.++|.+++.+ .+ ..+.+++..++.... ..|++..+..+++ +.+++++|.+. +++
T Consensus 11 ~n~~~l~~~~v~iDlltds~t~ams~~~~~a~~~gd-------~~Y~~~~g~~~Le----eaia~~~g~~~------vv~ 73 (431)
T cd00617 11 YNVFLLRSEDVYIDLLTDSGTGAMSDYQWAAMMLGD-------EAYAGSKSFYDLE----DAVQDLFGFKH------IIP 73 (431)
T ss_pred CCEEeCCCCCcCCCCCCCCCcHHHHHHHHHHHHhCC-------CccCCCCCHHHHH----HHHHHHHCCCe------EEE
Confidence 356666666652 12 244444455544311 1245556667666 67788888864 778
Q ss_pred CCChH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCC-------CCCCCCHHHHHHH
Q 018231 119 LSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNE-------STGYIDYDQLEKS 190 (359)
Q Consensus 119 tsG~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~-------~~~~~d~e~l~~~ 190 (359)
|+|++ ++..++.++++|||.| +++ |.|..+...+...|+..+.++++... ..+.+|+++|++.
T Consensus 74 t~~Gt~Al~la~~al~~pGD~V-~~~--------~~f~~~~~~i~~~Ga~pv~v~i~~~~~~~~~~pf~gniD~e~Le~~ 144 (431)
T cd00617 74 THQGRGAENILFSILLKPGRTV-PSN--------MHFDTTRGHIEANGAVPVDLVIDEAHDAQELIPFKGNIDVAKLEKL 144 (431)
T ss_pred cCCHHHHHHHHHHHhCCCCCEE-ccC--------CcccchHHHHHhCCCEeEEEecccccccccccCCCCCcCHHHHHHH
Confidence 87777 8888899999999987 455 33333333566778777666543221 1345999999999
Q ss_pred hhhh---CCcEEEEc-CCC-C-CChh---hHHHHHHHHHHcCCEEEEecccccccccc------CCCCCC--------CC
Q 018231 191 ATLF---RPKLIVAG-ASA-Y-ARLY---DYERIRKVCNKQKAIMLADMAHISGLVAA------GVIPSP--------FE 247 (359)
Q Consensus 191 i~~~---~~k~v~l~-~~n-~-g~~~---~l~~i~~la~~~~~~vivD~a~~~g~~~~------~~~~~~--------~~ 247 (359)
+++. ++++|+++ ++| + |.+. ++++|.++|++||++||.|++|..+...+ +....+ +.
T Consensus 145 I~~~~~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g~~~~si~ei~~e~~s 224 (431)
T cd00617 145 IDEVGAENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAYFIKEREEGYRDKSIAEIAREMFS 224 (431)
T ss_pred hCcccCCCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhcccccccCCCHHHHHHHhhc
Confidence 9862 37888887 788 5 6544 56788999999999999999987653221 111111 22
Q ss_pred CceEEEeCCCCcCCCCCceEEEEeCCcchhccCCcchhhhHHHhhcccc--CCCC--CCCCcHHHHHHHHHHHHHH
Q 018231 248 YADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAV--FPGL--QGGPHNHTITGLAVALKQV 319 (359)
Q Consensus 248 ~~D~v~~s~~K~l~gp~gG~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~--~gt~~~~~i~al~~Al~~~ 319 (359)
..|.+++|++|.+.++.||+++++++ ++.++++... ..+. .|..+...+.|+..+|++.
T Consensus 225 ~sd~~~mS~~K~~~~~~GG~i~~~d~-------------~l~~~~~~~~~~~~~~~~~gG~~~r~~~A~A~gL~e~ 287 (431)
T cd00617 225 YADGCTMSAKKDGLVNIGGFLALRDD-------------ELYEEARQRVVLYEGFVTYGGMAGRDMEALAQGLREA 287 (431)
T ss_pred cCCEEEEEeecCCCCccceEEEeCcH-------------HHHHHHHHhccccCCccccccccHHHHHHHHHHHHhc
Confidence 48999999999998888999999984 4555544221 1222 3566667778887788664
No 97
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=99.82 E-value=2.2e-18 Score=165.94 Aligned_cols=222 Identities=15% Similarity=0.126 Sum_probs=150.4
Q ss_pred cChHHHHHHHHHHHHh-----hcCceeeCCCCC--CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHH
Q 018231 30 VDPEIADIIEHEKARQ-----WKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRAL 102 (359)
Q Consensus 30 ~~~~~~~~~~~~~~~~-----~~~i~l~~~~~~--~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a 102 (359)
.+.+.+..+.+..+.. ...++|..++++ +++.+++++.+.+.. . ..|+...+..++++++.+++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p~~~~~~~~~~a~~~~~~~-~-------~~Y~~~~G~~~lr~aia~~~~ 78 (393)
T TIGR03538 7 LQPYPFEKLAALLAGVTPPASKPPIALSIGEPKHPTPAFVLEALRENLHG-L-------STYPTTKGLPELRQAIARWLE 78 (393)
T ss_pred CCccHHHHHHHHHHhhhhhcCCCeEEecCCCCCCCCCHHHHHHHHHHhhc-c-------CCCCCCCCCHHHHHHHHHHHH
Confidence 4445555555544322 467888877764 678889998876543 1 113333556778877888887
Q ss_pred HHcCC----CCCCCceeEEECCChH-HHHHHHHhhcCCCCe--eeecCCCCCcccCccccccccceeeeeeeeEEEeccc
Q 018231 103 EAFRL----DPEKWGVNVQSLSGSP-SNFQVYTALLKPHDR--IMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL 175 (359)
Q Consensus 103 ~~~g~----~~~~~~~~v~~tsG~~-a~~~~~~al~~~Gd~--Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 175 (359)
+.+|. ++++ +|++|+|++ ++..++.++++|||. |++++ |.|..+...+...|.++..+++..
T Consensus 79 ~~~~~~~~~~~~~---~i~it~Ga~~al~~~~~~l~~~gd~~~vlv~~--------P~y~~~~~~~~~~g~~~~~v~~~~ 147 (393)
T TIGR03538 79 RRFDLPTGVDPER---HVLPVNGTREALFAFAQAVINPGQAPLVVMPN--------PFYQIYEGAALLAGAEPYFLNCTA 147 (393)
T ss_pred HhhCCcccCCCCc---eEEECCCcHHHHHHHHHHHcCCCCcceEEecC--------CCCcchHHHHHhcCCeEEEeeccc
Confidence 77664 3432 599999999 888788999999996 88887 444444444556676665565321
Q ss_pred CCCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhh---HHHHHHHHHHcCCEEEEeccccccccccCCCCCC-----
Q 018231 176 NESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP----- 245 (359)
Q Consensus 176 ~~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~---l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~----- 245 (359)
+ +++.+|++++++.+.+ ++|+++++ |+| ||...+ +++|.++|++||++||+|+++..-.........+
T Consensus 148 ~-~~~~~d~~~l~~~~~~-~~k~i~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~ 225 (393)
T TIGR03538 148 E-NGFLPDFDAVPESVWR-RCQLLFVCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAA 225 (393)
T ss_pred c-CCCCCCHHHHHHHHhh-cceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhc
Confidence 2 3568999999998877 89999887 888 996655 7788899999999999999975322211000000
Q ss_pred --C----CCceEEEeCCCCcC--CCCCceEEEEeC
Q 018231 246 --F----EYADVVTTTTHKSL--RGPRGAMIFFRK 272 (359)
Q Consensus 246 --~----~~~D~v~~s~~K~l--~gp~gG~l~~~~ 272 (359)
. ..--+++.|.+|.+ .|.+-|+++.++
T Consensus 226 ~~~~~~~~~~vi~i~S~SK~~~~~GlRvG~~i~~~ 260 (393)
T TIGR03538 226 AQLGRDDFRRCLVFHSLSKRSNLPGLRSGFVAGDA 260 (393)
T ss_pred ccccccccccEEEEecchhhcCCcccceEEEecCH
Confidence 0 01238899999965 344449998876
No 98
>PLN02656 tyrosine transaminase
Probab=99.82 E-value=1.7e-18 Score=167.55 Aligned_cols=205 Identities=13% Similarity=0.036 Sum_probs=142.8
Q ss_pred hcCceeeCCCC------CCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCC--CCCCCceeEE
Q 018231 46 WKGLELIPSEN------FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRL--DPEKWGVNVQ 117 (359)
Q Consensus 46 ~~~i~l~~~~~------~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~--~~~~~~~~v~ 117 (359)
++.|+|..|++ ++|+.+++++.+.+......+ |+...+..++++++.+++.+.+|. +++ +|+
T Consensus 31 ~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~------Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~----~i~ 100 (409)
T PLN02656 31 KRVISLGMGDPTAYSCFHTTHVAQEAVVDALQSNKFNG------YAPTVGLPQARRAIAEYLSRDLPYKLSLD----DVF 100 (409)
T ss_pred CeeeecCCCCCCcCCCCCCCHHHHHHHHHHHhcCCCCC------CCCCCCCHHHHHHHHHHHHHhcCCCCCcc----cEE
Confidence 36788886665 457899999988776532112 333355677777777887776664 443 599
Q ss_pred ECCChH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCC
Q 018231 118 SLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRP 196 (359)
Q Consensus 118 ~tsG~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~ 196 (359)
+|+|++ ++..++.++++|||+|+++++.|+.+ ...+...|.++..+++..+ +++.+|++++++.+++ ++
T Consensus 101 ~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~--------~~~~~~~g~~~~~i~~~~~-~~~~~d~~~l~~~~~~-~~ 170 (409)
T PLN02656 101 ITSGCTQAIDVALSMLARPGANILLPRPGFPIY--------ELCAAFRHLEVRYVDLLPE-KGWEVDLDAVEALADQ-NT 170 (409)
T ss_pred EeCChHHHHHHHHHHHhCCCCeEEEeCCCCCcH--------HHHHHHcCCEEEEEeCCCc-CCCCCCHHHHHHHhcc-Cc
Confidence 999999 88778888899999999999665432 2233445766666654222 4578999999998877 78
Q ss_pred cEEEEc-CCC-CCCh---hhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCC---C--CceEEEeCCCCcCCCC--C
Q 018231 197 KLIVAG-ASA-YARL---YDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPF---E--YADVVTTTTHKSLRGP--R 264 (359)
Q Consensus 197 k~v~l~-~~n-~g~~---~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~---~--~~D~v~~s~~K~l~gp--~ 264 (359)
++++++ |+| ||.. .++++|.++|+++|+++|+|+++..-... +....++ . ..-+++.|++|.|+.| +
T Consensus 171 ~~v~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~-~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGlR 249 (409)
T PLN02656 171 VALVIINPGNPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFG-SNPFVPMGVFGSIVPVLTLGSLSKRWIVPGWR 249 (409)
T ss_pred eEEEEECCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccC-CCCcccHHHhcccCcEEEEcccchhccCccee
Confidence 888887 888 8865 46888999999999999999997522221 1111111 1 1237889999986443 3
Q ss_pred ceEEEEe
Q 018231 265 GAMIFFR 271 (359)
Q Consensus 265 gG~l~~~ 271 (359)
-|+++..
T Consensus 250 iG~~i~~ 256 (409)
T PLN02656 250 LGWFVTT 256 (409)
T ss_pred EEEEEEe
Confidence 3999985
No 99
>PRK07550 hypothetical protein; Provisional
Probab=99.82 E-value=2.7e-18 Score=164.92 Aligned_cols=207 Identities=14% Similarity=0.068 Sum_probs=142.6
Q ss_pred cCceeeCCCCC--CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-
Q 018231 47 KGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP- 123 (359)
Q Consensus 47 ~~i~l~~~~~~--~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~- 123 (359)
..++|..++++ +++.+.+++.+.+.... ...|+...+..++++++++++.+.+|..... .+|++|+|++
T Consensus 30 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~--~~i~~t~G~~~ 101 (386)
T PRK07550 30 PLIDLSQAVPGYPPPPELLRALAEAAADPA------AHLYGPVEGLPELREAYAAHYSRLYGAAISP--EQVHITSGCNQ 101 (386)
T ss_pred CeEEeCCCCCCCCCCHHHHHHHHHHHhCcC------CcCCCCCCCCHHHHHHHHHHHHHHhCCCCCc--ceEEEecCcHH
Confidence 56888877753 46788888887654311 1123333556788888888888887853221 2599999998
Q ss_pred HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCC-CCCCCCHHHHHHHhhhhCCcEEEEc
Q 018231 124 SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNE-STGYIDYDQLEKSATLFRPKLIVAG 202 (359)
Q Consensus 124 a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~-~~~~~d~e~l~~~i~~~~~k~v~l~ 202 (359)
++..++.+++++||+|+++++.|..+.. .+...|.+++.++ .++ +++.+|++++++.+++ ++++++++
T Consensus 102 al~~~~~~l~~~gd~Vlv~~p~y~~~~~--------~~~~~g~~~~~v~--~~~~~~~~~~~~~l~~~~~~-~~~~v~~~ 170 (386)
T PRK07550 102 AFWAAMVTLAGAGDEVILPLPWYFNHKM--------WLDMLGIRPVYLP--CDEGPGLLPDPAAAEALITP-RTRAIALV 170 (386)
T ss_pred HHHHHHHHhcCCCCEEEEcCCCCcchHH--------HHHhcCCEEEEEe--cCCCcCCCCCHHHHHHHhcc-cCcEEEEe
Confidence 8877888889999999999966654422 3345676665555 442 4567899999999987 89988776
Q ss_pred -CCC-CCChhh---HHHHHHHHHHcCCEEEEeccccccccccCCCCCCC-----CCceEEEeCCCCcCC--CCCceEEEE
Q 018231 203 -ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPF-----EYADVVTTTTHKSLR--GPRGAMIFF 270 (359)
Q Consensus 203 -~~n-~g~~~~---l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~-----~~~D~v~~s~~K~l~--gp~gG~l~~ 270 (359)
|+| +|...+ +++|.++|+++|+++|+|++++............+ ..-.+++.|++|.++ |.+.|++++
T Consensus 171 ~P~NPtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~i~~ 250 (386)
T PRK07550 171 TPNNPTGVVYPPELLHELYDLARRHGIALILDETYRDFDSGGGAPHDLFADPDWDDTLVHLYSFSKSYALTGHRVGAVVA 250 (386)
T ss_pred CCCCCCCcccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCcchhhCCCccccEEEEecchhhccCcccceEeeec
Confidence 888 886554 78899999999999999999753211111000000 112477899999885 444599998
Q ss_pred eC
Q 018231 271 RK 272 (359)
Q Consensus 271 ~~ 272 (359)
++
T Consensus 251 ~~ 252 (386)
T PRK07550 251 SP 252 (386)
T ss_pred CH
Confidence 76
No 100
>PLN03227 serine palmitoyltransferase-like protein; Provisional
Probab=99.81 E-value=1.7e-18 Score=166.23 Aligned_cols=188 Identities=17% Similarity=0.187 Sum_probs=131.0
Q ss_pred CcHHHHHHHHhhhhccCCCCCCCCc-ccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhhcCCC
Q 018231 58 TSVSVMQAVGSVMTNKYSEGYPGAR-YYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPH 136 (359)
Q Consensus 58 ~~~~v~~al~~~~~~~~~~g~~~~~-~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al~~~G 136 (359)
..|.++++..+.+.+ |.-|..+.+ +|+......++| +.+++++|.+. .+++++|.+++..++.++++||
T Consensus 13 ~~~~~~~~~~~a~~~-~g~~~~~sr~~yg~~~~~~~LE----~~lA~~~g~e~-----al~~~sG~~a~~~~i~~l~~~G 82 (392)
T PLN03227 13 SSPTLRQTALESLSH-YGCGSCGPRGFYGTIDAHLELE----QCMAEFLGTES-----AILYSDGASTTSSTVAAFAKRG 82 (392)
T ss_pred CCHHHHHHHHHHHHH-hCCCCcccccccCChHHHHHHH----HHHHHHhCCCc-----EEEecCcHHHHHHHHHHhCCCC
Confidence 467899999888875 544444433 455445455555 88999999864 5999999997777888999999
Q ss_pred CeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHH---Hhhh----------hCCcEEEEc-
Q 018231 137 DRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEK---SATL----------FRPKLIVAG- 202 (359)
Q Consensus 137 d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~---~i~~----------~~~k~v~l~- 202 (359)
|+|++.+..|++... ++.+.+..+..+ +.+ |++++++ .+.+ .++++|++.
T Consensus 83 D~Vl~~~~~h~s~~~--------~~~l~~~~~~~~--~~~------d~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~ 146 (392)
T PLN03227 83 DLLVVDRGVNEALLV--------GVSLSRANVRWF--RHN------DMKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEG 146 (392)
T ss_pred CEEEEeccccHHHHH--------HHHHcCCeEEEe--CCC------CHHHHHHHHHHhhhhccccccccCCCcEEEEEcC
Confidence 999999988776543 222334333323 232 3444443 4421 157788887
Q ss_pred CCC-CCChhhHHHHHHHHHHcCCEEEEecccccccccc---CC-CC---CCCCCceEEEeCCCCcCCCCCceEEEEeC
Q 018231 203 ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAA---GV-IP---SPFEYADVVTTTTHKSLRGPRGAMIFFRK 272 (359)
Q Consensus 203 ~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~---~~-~~---~~~~~~D~v~~s~~K~l~gp~gG~l~~~~ 272 (359)
+.| +|.+.|+++|.++|++||+++|+|++|++|.... .. .. .|..++|++++|.+|++ ||.||++++++
T Consensus 147 v~~~~G~i~~l~~i~~l~~~~g~~livDe~~~~g~~g~~G~g~~~~~g~~p~~~~Div~~slsk~~-g~~gg~v~~~~ 223 (392)
T PLN03227 147 LYKNTGTLAPLKELVALKEEFHYRLILDESFSFGTLGKSGRGSLEHAGLKPMVHAEIVTFSLENAF-GSVGGMTVGSE 223 (392)
T ss_pred CcCCCCcccCHHHHHHHHHHcCCEEEEECcccccccCCCCCcHHHHcCCCCCCCceEEEeechhhh-hccCcEEecCH
Confidence 555 7899999999999999999999999998665421 00 00 11225899999999976 68889888776
No 101
>PRK07683 aminotransferase A; Validated
Probab=99.81 E-value=3.4e-18 Score=164.24 Aligned_cols=228 Identities=14% Similarity=0.090 Sum_probs=154.6
Q ss_pred cccccccChHHHHHHHHHHHHhhcCceeeCCCC--CCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHH
Q 018231 24 NAPLEVVDPEIADIIEHEKARQWKGLELIPSEN--FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRA 101 (359)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~--~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~ 101 (359)
+++.+.+.+..+.............++|..+.+ ++++.+.+++.+.+.+.+ .+| +...+..++++++.+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p~~~~~~~~~~a~~~~~~~~~-~~Y------~~~~g~~~lr~~ia~~l 78 (387)
T PRK07683 6 NPRVKDIQISGIRQFSNMVQNYDNLISLTIGQPDFPTPSHVKEAAKRAITENY-TSY------THNAGLLELRKAACNFV 78 (387)
T ss_pred hHHHHhCCccHHHHHHHHHHhcCCeEEecCCCCCCCCCHHHHHHHHHHHhcCC-CCC------CCCCCCHHHHHHHHHHH
Confidence 344455556655555444322345688887654 346788899888876522 122 22345677777777888
Q ss_pred HHHcCC--CCCCCceeEEECCChH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCC
Q 018231 102 LEAFRL--DPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNES 178 (359)
Q Consensus 102 a~~~g~--~~~~~~~~v~~tsG~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~ 178 (359)
.+.+|+ +++. +|++|+|++ ++..++.+++++||+|+++.+.|.++ ...+...|+++..+ +.+.+
T Consensus 79 ~~~~g~~~~~~~---~I~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~--------~~~~~~~g~~~~~~--~~~~~ 145 (387)
T PRK07683 79 KDKYDLHYSPES---EIIVTIGASEAIDIAFRTILEPGTEVILPAPIYPGY--------EPIIRLCGAKPVFI--DTRST 145 (387)
T ss_pred HHHhCCCCCCCC---cEEEeCChHHHHHHHHHHhCCCCCEEEEcCCCccch--------HHHHHHcCCEEEEe--ecCcc
Confidence 766665 5541 499999999 88878888899999999998555433 22344557666545 45545
Q ss_pred CCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCCh---hhHHHHHHHHHHcCCEEEEeccccccccccC---CCCC-CCCCc
Q 018231 179 TGYIDYDQLEKSATLFRPKLIVAG-ASA-YARL---YDYERIRKVCNKQKAIMLADMAHISGLVAAG---VIPS-PFEYA 249 (359)
Q Consensus 179 ~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~---~~l~~i~~la~~~~~~vivD~a~~~g~~~~~---~~~~-~~~~~ 249 (359)
++.+|.+++++.+++ ++++++++ ++| ||.. .++++|.++|+++|+++|+|+++........ .... +..+-
T Consensus 146 ~~~~~~~~l~~~~~~-~~~~i~i~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~ 224 (387)
T PRK07683 146 GFRLTAEALENAITE-KTRCVVLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQPHTSIAHFPEMREK 224 (387)
T ss_pred cCCCCHHHHHHhcCc-CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCCCcCChhhccCCcCC
Confidence 678899999999887 88999887 888 8865 4588899999999999999999864332211 1111 01124
Q ss_pred eEEEeCCCCcCCCC--CceEEEEeC
Q 018231 250 DVVTTTTHKSLRGP--RGAMIFFRK 272 (359)
Q Consensus 250 D~v~~s~~K~l~gp--~gG~l~~~~ 272 (359)
.+++.|.+|.++.| +-|++++++
T Consensus 225 vi~~~s~SK~~~~pGlRiG~i~~~~ 249 (387)
T PRK07683 225 TIVINGLSKSHSMTGWRIGFLFAPS 249 (387)
T ss_pred eEEEeeccccccCccceeEEEEcCH
Confidence 58899999987533 339999877
No 102
>PLN02483 serine palmitoyltransferase
Probab=99.81 E-value=1.1e-18 Score=171.75 Aligned_cols=199 Identities=20% Similarity=0.144 Sum_probs=134.9
Q ss_pred cCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceee
Q 018231 84 YGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISA 163 (359)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~ 163 (359)
|+......++| +.+++++|.+. .|++++|..++..++.++++|||.|++.++.|++... .+..
T Consensus 142 ~g~~~~~~ele----~~lA~~~g~~~-----ai~~~~G~~an~~~i~al~~~Gd~Vi~d~~~h~s~~~--------~~~~ 204 (489)
T PLN02483 142 GGTTKLHRELE----ELVARFVGKPA-----AIVFGMGYATNSTIIPALIGKGGLIISDSLNHNSIVN--------GARG 204 (489)
T ss_pred cCCcHHHHHHH----HHHHHHhCCCc-----EEEECCHHHHHHHHHHHhCCCCCEEEEcchhhHHHHH--------HHHH
Confidence 34344455544 88999999653 5999999887777888999999999999988877643 3456
Q ss_pred eeeeeEEEecccCCCCCCCCHHHHHHHhhh------hCC-----cEEEEc--C-CCCCChhhHHHHHHHHHHcCCEEEEe
Q 018231 164 VSIFFETMPYRLNESTGYIDYDQLEKSATL------FRP-----KLIVAG--A-SAYARLYDYERIRKVCNKQKAIMLAD 229 (359)
Q Consensus 164 ~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~------~~~-----k~v~l~--~-~n~g~~~~l~~i~~la~~~~~~vivD 229 (359)
.|++++.++ .+ |++++++.+.+ .++ ++++++ . +..|.+.++++|.++|+++|+++|+|
T Consensus 205 ~Ga~v~~~~--~~------d~~~le~~l~~~i~~~~p~t~~p~~k~livve~v~s~~G~~~~l~~I~~la~~~~~~livD 276 (489)
T PLN02483 205 SGATIRVFQ--HN------TPSHLEEVLREQIAEGQPRTHRPWKKIIVIVEGIYSMEGELCKLPEIVAVCKKYKAYVYLD 276 (489)
T ss_pred cCCeEEEEe--CC------CHHHHHHHHHhhhhccccccccCCceEEEEECCCCCCCCcccCHHHHHHHHHHcCCEEEEE
Confidence 676665553 33 56666665542 122 555554 2 33788999999999999999999999
Q ss_pred ccccccccccC---C-CCCCC--CCceEEEeCCCCcCCCCCceEEEEeCCcchhccCCcchhhhHHHhhccccCCCCC-C
Q 018231 230 MAHISGLVAAG---V-IPSPF--EYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQ-G 302 (359)
Q Consensus 230 ~a~~~g~~~~~---~-~~~~~--~~~D~v~~s~~K~l~gp~gG~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-g 302 (359)
++|+.|..... . ...+. .++|++++|++|+|+ +.||+++.++ ++.+.+........+ +
T Consensus 277 Ea~s~g~~G~~G~g~~~~~~v~~~~~dI~~~SfSKs~g-~~GG~i~~~~--------------~li~~l~~~~~~~~~~~ 341 (489)
T PLN02483 277 EAHSIGAVGKTGRGVCELLGVDPADVDIMMGTFTKSFG-SCGGYIAGSK--------------ELIQYLKRTCPAHLYAT 341 (489)
T ss_pred CcCccCccCCCCCchHHhcCCCcccCcEEEEecchhcc-cCceEEEcCH--------------HHHHHHHHhCccccccC
Confidence 99987654210 0 00111 247999999999984 5679988876 555555433222222 3
Q ss_pred CCcHHHHHHHHHHHHHHhcc
Q 018231 303 GPHNHTITGLAVALKQVCTL 322 (359)
Q Consensus 303 t~~~~~i~al~~Al~~~~~~ 322 (359)
+.+...+.++.++|+.+..+
T Consensus 342 ~~~p~~~~~~~aaL~~l~~~ 361 (489)
T PLN02483 342 SMSPPAVQQVISAIKVILGE 361 (489)
T ss_pred CcCHHHHHHHHHHHHHHHhC
Confidence 45556666777888877643
No 103
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=99.81 E-value=2.4e-18 Score=164.91 Aligned_cols=236 Identities=19% Similarity=0.202 Sum_probs=151.5
Q ss_pred hcCceeeCCCC--C-CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCCh
Q 018231 46 WKGLELIPSEN--F-TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGS 122 (359)
Q Consensus 46 ~~~i~l~~~~~--~-~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~ 122 (359)
++.|++..+++ + ++|.+++++.+.+.. +..+.+..... .+...+.+.++++++++++.+ + .+++++|+
T Consensus 39 ~~~id~~~~~~~g~~~~~~v~~a~~~~~~~-~~~~~~~~~~~---~g~~~~~~~l~~~la~~~~~~--~---~i~~~~g~ 109 (385)
T PRK05958 39 RRMLNFASNDYLGLARHPRLIAAAQQAARR-YGAGSGGSRLV---TGNSPAHEALEEELAEWFGAE--R---ALLFSSGY 109 (385)
T ss_pred ceEEEeeCCCcccCCCCHHHHHHHHHHHHh-cCCCCCCcCcc---cCCcHHHHHHHHHHHHHhCCC--c---EEEECcHH
Confidence 45688887764 3 578999999998865 32222211111 111223344668899999853 2 47777777
Q ss_pred HHHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhh--CCcEEE
Q 018231 123 PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF--RPKLIV 200 (359)
Q Consensus 123 ~a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~--~~k~v~ 200 (359)
.++..++.+++++||+|++.++.|+++.. .+.+.|..+..++ . .|++++++.+++. ++++++
T Consensus 110 ~~~~~~l~~~~~~gd~V~~~~~~~~~~~~--------~~~~~g~~~~~~~--~------~d~~~l~~~i~~~~~~~~lvi 173 (385)
T PRK05958 110 AANLAVLTALAGKGDLIVSDKLNHASLID--------GARLSRARVRRYP--H------NDVDALEALLAKWRAGRALIV 173 (385)
T ss_pred HHHHHHHHHhCCCCCEEEEeCccCHHHHH--------HHHhcCCceEEeC--C------CCHHHHHHHHHhccCCCeEEE
Confidence 76666778889999999999877765543 2334455554443 2 3889999988752 244555
Q ss_pred Ec-CCC-CCChhhHHHHHHHHHHcCCEEEEecccccccccc-CC--CC-CCCC--CceEEEeCCCCcCCCCCceEEEEeC
Q 018231 201 AG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAA-GV--IP-SPFE--YADVVTTTTHKSLRGPRGAMIFFRK 272 (359)
Q Consensus 201 l~-~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~-~~--~~-~~~~--~~D~v~~s~~K~l~gp~gG~l~~~~ 272 (359)
+. +.+ +|...++++|.++|++||+++|+|++|+.|.... +. .. ..+. ..++++.|++|+| ++.||+++.++
T Consensus 174 ~~~~~~~~G~~~~l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~-~~~Gg~~~~~~ 252 (385)
T PRK05958 174 TESVFSMDGDLAPLAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKAL-GSSGAAVLGSE 252 (385)
T ss_pred EEecccCCCCcCCHHHHHHHHHHhCCEEEEECcccccccCCCCCchHHhhCCCCCCceEEEEechhhc-ccCCcEEEcCH
Confidence 44 334 7888999999999999999999999998765431 10 00 0111 2458899999998 45678887765
Q ss_pred CcchhccCCcchhhhHHHhhccccCCCCC-CCCcHHHHHHHHHHHHHHhc
Q 018231 273 GVKEINKQGKEVFYDYEEKINQAVFPGLQ-GGPHNHTITGLAVALKQVCT 321 (359)
Q Consensus 273 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-gt~~~~~i~al~~Al~~~~~ 321 (359)
++.+.+.....+... ++++....+++.+|++.+..
T Consensus 253 --------------~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~ 288 (385)
T PRK05958 253 --------------TLIDYLINRARPFIFTTALPPAQAAAARAALRILRR 288 (385)
T ss_pred --------------HHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhc
Confidence 444433222112222 34556677778788887764
No 104
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=99.81 E-value=2.9e-18 Score=162.57 Aligned_cols=201 Identities=12% Similarity=0.103 Sum_probs=140.5
Q ss_pred ceeeCCCC--CCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCC--CCCCCceeEEECCChH-
Q 018231 49 LELIPSEN--FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRL--DPEKWGVNVQSLSGSP- 123 (359)
Q Consensus 49 i~l~~~~~--~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~--~~~~~~~~v~~tsG~~- 123 (359)
++|..+.+ ++++.+.+++.+.... . ..|+...+..++++++.+++.+.+|+ ++++ +|++|+|++
T Consensus 3 ~~~~~g~p~~~~~~~~~~~~~~~~~~-~-------~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~---~Iiit~Gs~~ 71 (350)
T TIGR03537 3 FDFGTGDPKEPTPPFIRKALIDAVPE-V-------SQYPSALGTKALREAISGWFERRFGVKLDPDA---QVLPSAGSKE 71 (350)
T ss_pred EeccCCCCCCCCCHHHHHHHHHHHhc-c-------CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC---cEEEcCChHH
Confidence 45554444 4578888988876532 1 12344455677888888888887785 4432 499999999
Q ss_pred HHHHHHHhhcCCC---CeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCC-CCCCCCHHHHHHHhhhhCCcEE
Q 018231 124 SNFQVYTALLKPH---DRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNE-STGYIDYDQLEKSATLFRPKLI 199 (359)
Q Consensus 124 a~~~~~~al~~~G---d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~-~~~~~d~e~l~~~i~~~~~k~v 199 (359)
++..++.+++++| |+|+++++ .|..+...+...|.+++.++ .++ +++.+|++++++++.+ ++|++
T Consensus 72 ai~~~~~~~~~~g~~~d~Vl~~~p--------~y~~~~~~~~~~g~~~~~v~--~~~~~~~~~d~~~l~~~~~~-~~~~i 140 (350)
T TIGR03537 72 AIFHFPLVFIDPEEDRRRVIFGTP--------GYPVYERGALFAGGEPTAVK--LKKEDGFLLRLEKVEKSILE-ETKIV 140 (350)
T ss_pred HHHHHHHHHcCCCCCCceEEEcCC--------CCcchHHHHHhcCCEEEEcc--cCcccCCccCHHHHHHhhhh-ccEEE
Confidence 8777888889887 69999994 44444445667787775565 442 4567999999999887 89999
Q ss_pred EEc-CCC-CCChhh---HHHHHHHHHHcCCEEEEeccccccccccC---CCCCCCCCceEEEeCCCCcCC--CCCceEEE
Q 018231 200 VAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAG---VIPSPFEYADVVTTTTHKSLR--GPRGAMIF 269 (359)
Q Consensus 200 ~l~-~~n-~g~~~~---l~~i~~la~~~~~~vivD~a~~~g~~~~~---~~~~~~~~~D~v~~s~~K~l~--gp~gG~l~ 269 (359)
+++ |+| ||...+ +++|.++|+++|+++|+|++++....... ..... ....+++.|++|.++ |.+.|+++
T Consensus 141 ~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~-~~~~i~~~s~SK~~g~~GlRiG~~~ 219 (350)
T TIGR03537 141 WINYPHNPTGATAPRSYLKETIAMCREHGIILCSDECYTEIYFGEPPHSALEVG-IENVLAFHSLSKRSGMTGYRSGFVA 219 (350)
T ss_pred EEeCCCCCcCcccCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCchhhcC-cCCEEEEeecccccCCccccceeee
Confidence 988 888 897666 88899999999999999999753222110 00000 013488889999874 33348887
Q ss_pred EeC
Q 018231 270 FRK 272 (359)
Q Consensus 270 ~~~ 272 (359)
.++
T Consensus 220 ~~~ 222 (350)
T TIGR03537 220 GDE 222 (350)
T ss_pred cCH
Confidence 655
No 105
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=99.81 E-value=2.3e-18 Score=165.23 Aligned_cols=235 Identities=17% Similarity=0.160 Sum_probs=155.3
Q ss_pred cCceeeCCC--CC-CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH
Q 018231 47 KGLELIPSE--NF-TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP 123 (359)
Q Consensus 47 ~~i~l~~~~--~~-~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~ 123 (359)
+.++|..+. .. +++.+++++.+.+.. +...+.. |....+..++++.+++++++++|.+. .+++++|++
T Consensus 34 ~~id~~~~~~~g~~~~~~~~~a~~~~~~~-~~~~~~~---~~~~~g~~~l~~~l~~~l~~~~g~~~-----~i~~~sG~~ 104 (385)
T TIGR01825 34 EVINLSSNNYLGFADHPRLKEAAAQAIQQ-YGVGAGA---VRTIAGTLRLHEELEEKLAKFKKTEA-----ALVFQSGFN 104 (385)
T ss_pred eEEEeeccCccCCCCCHHHHHHHHHHHHH-cCCCCCc---cCcccCCcHHHHHHHHHHHHHhCCCc-----EEEECcHHH
Confidence 458887654 33 688999999887764 2111111 11123345566667899999999643 599999988
Q ss_pred HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhh---CCcEEE
Q 018231 124 SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF---RPKLIV 200 (359)
Q Consensus 124 a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~---~~k~v~ 200 (359)
++..++.++++|||.|++.++.|+++.. .+.+.+.+...+ ..+|++++++.+.+. ++++|+
T Consensus 105 a~~~a~~~~~~~gd~vi~~~~~~~~~~~--------~~~~~g~~~~~~--------~~~d~~~l~~~l~~~~~~~~~~v~ 168 (385)
T TIGR01825 105 TNQGVLSALLRKGDIVLSDELNHASIID--------GLRLTKATKKIY--------KHADMDDLDRVLRENPSYGKKLIV 168 (385)
T ss_pred HHHHHHHHhCCCCCEEEEEccccHHHHH--------HHHhcCCceEEe--------CCCCHHHHHHHHHhhccCCCeEEE
Confidence 7777888899999999998877765532 222334333222 146888888877642 577877
Q ss_pred Ec-CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCC----CCCCC-CCceEEEeCCCCcCCCCCceEEEEeCC
Q 018231 201 AG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGV----IPSPF-EYADVVTTTTHKSLRGPRGAMIFFRKG 273 (359)
Q Consensus 201 l~-~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~----~~~~~-~~~D~v~~s~~K~l~gp~gG~l~~~~~ 273 (359)
++ ..| +|.+.|+++|.++|++||+++|+|++|+.|.....- ...++ .+.|+++.|++|+|+ ..||+++.++
T Consensus 169 ~~~v~~~tG~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~gG~~~~~~- 246 (385)
T TIGR01825 169 TDGVFSMDGDVAPLPEIVELAERYGAVTYVDDAHGSGVMGEAGRGTVHHFGLEDKVDIQVGTLSKAIG-VVGGYAAGHK- 246 (385)
T ss_pred EecCCcCCCCccCHHHHHHHHHHhCCEEEEECcccccCcCCCCCccHhhcCCCcCCcEEEEeccHHhh-cCCCEEecCH-
Confidence 76 344 888999999999999999999999999776553110 00111 247899999999984 4568887766
Q ss_pred cchhccCCcchhhhHHHhhccccCCCCCC-CCcHHHHHHHHHHHHHHhc
Q 018231 274 VKEINKQGKEVFYDYEEKINQAVFPGLQG-GPHNHTITGLAVALKQVCT 321 (359)
Q Consensus 274 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~g-t~~~~~i~al~~Al~~~~~ 321 (359)
++.+.+.....+...+ +++....+|+.+|++.+.+
T Consensus 247 -------------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~ 282 (385)
T TIGR01825 247 -------------ELIEYLKNRARPFLFSTAQPPAVVAALAAAVDELQR 282 (385)
T ss_pred -------------HHHHHHHHhCccccccCCCCHHHHHHHHHHHHHHhc
Confidence 4444443221222223 3455667788888877654
No 106
>COG3844 Kynureninase [Amino acid transport and metabolism]
Probab=99.80 E-value=1.4e-18 Score=154.53 Aligned_cols=272 Identities=17% Similarity=0.136 Sum_probs=179.5
Q ss_pred cCceeeCCC-CCCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChHHH
Q 018231 47 KGLELIPSE-NFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSN 125 (359)
Q Consensus 47 ~~i~l~~~~-~~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~a~ 125 (359)
..|-|..+. ...|+.+.....+...+.|.++...++.-....+ ..+-+.+-.+++.++|+.+.+ ++++.++++|
T Consensus 31 ~viyLdgnSLGa~p~~~~a~~~q~a~deW~~~lirsw~~a~~~W-~~lp~~lgdklApLiGA~~~E----vvv~dtts~n 105 (407)
T COG3844 31 GVIYLDGNSLGARPRAVTARLQQVATDEWGEGLIRSWNKAKADW-FDLPERLGDKLAPLIGARAGE----VVVTDTTSIN 105 (407)
T ss_pred CeEEeeccccccCchHHHHHHHHHHHHHHHhhhhhhhcccCCch-hhchhHHHHHhhhhhcCCCCc----eEEeCCcchH
Confidence 345554222 2345555555555544445444333322122222 233344779999999998865 8888888844
Q ss_pred HH-HHHh-h-cCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc
Q 018231 126 FQ-VYTA-L-LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG 202 (359)
Q Consensus 126 ~~-~~~a-l-~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~ 202 (359)
+. ++.+ + ..+|+.|++++-. ++.+-.|..+. -+.+.+... + -...+.++++++.+++ ++.+|+++
T Consensus 106 l~k~L~aalr~~~~r~vIv~E~~--~fpTdly~a~g-~~~~~~~~~-----~---~~~~~~P~~~~~~~~d-d~AvV~L~ 173 (407)
T COG3844 106 LFKVLAAALRPQEGRRVIVSEGD--NFPTDLYIAEG-LADLLGIGY-----D---LEGVIAPRALEEAITD-DVAVVLLS 173 (407)
T ss_pred HHHHHHHHhccCCCceEEeecCC--CCCcchhhhcc-hhhhhcccc-----c---ceeeeChHHHHHhhcc-ceEEEEec
Confidence 43 4444 4 5579999987622 12222222211 222333111 1 1245678899999998 88888888
Q ss_pred CCC--CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEeCCCCcCCCCCc--eEEEEeCCcchh-
Q 018231 203 ASA--YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG--AMIFFRKGVKEI- 277 (359)
Q Consensus 203 ~~n--~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g--G~l~~~~~~~~~- 277 (359)
..| ||...++.+|.+++++||++++.|-+|++|.++.+++..+ +|+.+.++||.++|.+| +++++.++....
T Consensus 174 ~V~y~TGql~dm~aiT~~AH~~galv~wDLAHsaGavp~~Lh~~g---aDfaigcsyKYLNgGPGapa~l~v~~~h~e~~ 250 (407)
T COG3844 174 HVNYKTGQLLDMRAITALAHQHGALVGWDLAHSAGAVPVDLHAAG---ADFAIGCSYKYLNGGPGAPAGLFVAPRHRERS 250 (407)
T ss_pred cccccccceeeHHHHHHHHHhcCceEEeehhcccCCcceeecccC---CCeeeeeeceeccCCCCCceeEEecccccccc
Confidence 666 8999999999999999999999999999999999998888 99999999999987666 899998876432
Q ss_pred ---ccCCcc--hhhhHHHhhccccCCCCC--CCCcHHHHHHHHHHHHHHhccccchhHhhhccccchhh
Q 018231 278 ---NKQGKE--VFYDYEEKINQAVFPGLQ--GGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAF 339 (359)
Q Consensus 278 ---~~~g~~--~~~~~~~~~~~~~~~~~~--gt~~~~~i~al~~Al~~~~~~~~~~~~~~~~l~~~~~~ 339 (359)
+.|.++ .-+.+.+.+....-..++ ||+++.+++++..||+.+.. ..+...|+++|-.-.-|
T Consensus 251 ~~~lsgW~gha~pf~m~~~y~p~~ga~rf~~gt~~V~s~aal~~aLDifa~-~~i~~lR~kSlaLTd~f 318 (407)
T COG3844 251 WPPLSGWWGHARPFAMEEVYAPGPGARRFLCGTQPVLSLAALEGALDIFAD-VDITELRKKSLALTDYF 318 (407)
T ss_pred ccccccccCCCCcchhhhccCcCccccceeeCCcchhhhHHHhhhhhhhhh-cCHHHHHHhhhHHHHHH
Confidence 333322 112333332222111223 99999999999999988875 56888888887765544
No 107
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=99.80 E-value=3.6e-18 Score=165.40 Aligned_cols=206 Identities=17% Similarity=0.157 Sum_probs=142.3
Q ss_pred hhcCceeeCCCC------CCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcC--------CCCC
Q 018231 45 QWKGLELIPSEN------FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFR--------LDPE 110 (359)
Q Consensus 45 ~~~~i~l~~~~~------~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g--------~~~~ 110 (359)
..+.|+|..+.. ++++.+.+++.+.+.... ...|+...+..++++++.+++.+.++ ++++
T Consensus 32 ~~~~i~l~~g~p~~~~~~~p~~~~~~a~~~~~~~~~------~~~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~~~~~~~ 105 (412)
T PTZ00433 32 PKSIIKLSVGDPTLDGNLLTPAIQTKALVEAVDSQE------CNGYPPTVGSPEAREAVATYWRNSFVHKESLKSTIKKD 105 (412)
T ss_pred CCCeeecCCcCCCCcCCCCCCHHHHHHHHHHhhcCC------CCCCCCCCCcHHHHHHHHHHHHhhccccccccCCCChh
Confidence 346688876554 468889999888765411 12234445567788777777776543 4554
Q ss_pred CCceeEEECCChH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHH
Q 018231 111 KWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEK 189 (359)
Q Consensus 111 ~~~~~v~~tsG~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~ 189 (359)
+|++|+|++ ++..++.+++++||+|++++++|..+ ...+...|.++..+++..+ +++.+|++++++
T Consensus 106 ----~i~it~G~~~al~~~~~~~~~~gd~vlv~~P~y~~~--------~~~~~~~g~~~~~i~~~~~-~~~~~d~~~l~~ 172 (412)
T PTZ00433 106 ----NVVLCSGVSHAILMALTALCDEGDNILVPAPGFPHY--------ETVCKAYGIEMRFYNCRPE-KDWEADLDEIRR 172 (412)
T ss_pred ----hEEEeCChHHHHHHHHHHhcCCCCEEEEccCCcccH--------HHHHHHcCCEEEEEecCcc-ccCcCCHHHHHH
Confidence 499999999 88878899999999999999555443 3344556766666654322 457899999999
Q ss_pred HhhhhCCcEEEEc-CCC-CCChh---hHHHHHHHHHHcCCEEEEeccccccccccCCCCCC---CC--CceEEEeCCCCc
Q 018231 190 SATLFRPKLIVAG-ASA-YARLY---DYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP---FE--YADVVTTTTHKS 259 (359)
Q Consensus 190 ~i~~~~~k~v~l~-~~n-~g~~~---~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~---~~--~~D~v~~s~~K~ 259 (359)
.+++ ++++|+++ |+| ||... ++++|.++|+++|++||+|+++.. ....+..... +. ..-+++.|++|.
T Consensus 173 ~~~~-~~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~-~~~~~~~~~~~~~~~~~~~~i~~~SfSK~ 250 (412)
T PTZ00433 173 LVDD-RTKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAG-MVFNGATFTSVADFDTTVPRVILGGTAKN 250 (412)
T ss_pred Hhcc-CceEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEeccccc-cccCCCCccchhhccCCCceEEEccchhh
Confidence 8887 89999887 888 88544 577889999999999999999752 2211111001 11 123778999997
Q ss_pred CC--CCCceEEEEe
Q 018231 260 LR--GPRGAMIFFR 271 (359)
Q Consensus 260 l~--gp~gG~l~~~ 271 (359)
++ |.+-|++++.
T Consensus 251 ~~~pGlRlG~~i~~ 264 (412)
T PTZ00433 251 LVVPGWRLGWLLLV 264 (412)
T ss_pred cCCCCeeEEEEEEe
Confidence 74 3334999973
No 108
>TIGR01366 serC_3 phosphoserine aminotransferase, putative. This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.
Probab=99.80 E-value=1.9e-19 Score=170.98 Aligned_cols=247 Identities=11% Similarity=0.033 Sum_probs=153.8
Q ss_pred ceeeCCCCCCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCC-hH-HHH
Q 018231 49 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSG-SP-SNF 126 (359)
Q Consensus 49 i~l~~~~~~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG-~~-a~~ 126 (359)
..+++|+...++.|++++.+....-. +.+. .+.++.+.++ .+++.+++++|++++. +|++++| +| ++.
T Consensus 5 ~~f~pGP~~~~~~v~~a~~~~~~~~~---~~~h---r~~~f~~~~~-~~r~~l~~l~~~~~~~---~v~f~~gs~T~a~~ 74 (361)
T TIGR01366 5 GRFGSGPSKVRLEQLQALTTTAASLF---GTSH---RQAPVKNLVG-RVREGLAELFSLPDGY---EVILGNGGATAFWD 74 (361)
T ss_pred CcccCCCcCCCHHHHHHHHhcCcccc---ccCc---CChHHHHHHH-HHHHHHHHHhCCCCCc---eEEEECCchhHHHH
Confidence 56889999999999999875421101 0000 1124444444 5889999999995442 4777544 55 888
Q ss_pred HHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc-CCC
Q 018231 127 QVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA 205 (359)
Q Consensus 127 ~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n 205 (359)
+++.+++.+ +.+++..-+|++.+...... ....+ +++.+++ + ++..++. .+.+ ++++|.++ .+|
T Consensus 75 ~~~~~l~~~-~~l~i~~G~~~~~~~~~a~~----~~~~~-~~~~~~~--~-~~~~~~~-----~~~~-~~~lV~~~h~et 139 (361)
T TIGR01366 75 AATFGLIEK-KSLHLSFGEFSSKFAKAVKL----APWLG-EPIIVTA--D-PGSAPEP-----QADP-GVDVIAWAHNET 139 (361)
T ss_pred HHHHhcccc-cccEEecCHHHHHHHHHHHh----hhccC-CceEEec--C-CCCCCCC-----ccCC-CCCEEEEcccCC
Confidence 788888743 22222232232211111000 00011 3444543 2 2233333 2344 89999988 555
Q ss_pred -CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEeCCCCcCCCCCc-eEEEEeCCcch----hcc
Q 018231 206 -YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKE----INK 279 (359)
Q Consensus 206 -~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~----~~~ 279 (359)
+|.+.|+++| ++++|+++++|++|++|..+.++.. +|++++|+||++++|+| ++++++++... ...
T Consensus 140 ~tG~~~pi~~I---~~~~g~~~iVDavqs~g~~~idv~~-----~D~~~~s~~K~lg~~~Gl~~~~~s~~~~~~~~~~~~ 211 (361)
T TIGR01366 140 STGVAVPVRRP---EGSDDALVVIDATSGAGGLPVDIAE-----TDVYYFAPQKNFASDGGLWLAIMSPAALERIEAIAA 211 (361)
T ss_pred ccceecccccc---cccCCCeEEEEcCccccCCCCCHHH-----CCEEEEEchhhcCCCCceEEEEECHHHHhhhhcccC
Confidence 8999999887 5889999999999999999998863 79999999999988877 66677775421 122
Q ss_pred CCcc--hhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhccccchhH
Q 018231 280 QGKE--VFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITFSHI 328 (359)
Q Consensus 280 ~g~~--~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~~~~~~~~ 328 (359)
+|.. ...++...+....-.+..+||++..++++.+|++++.++++++++
T Consensus 212 ~~~~~p~~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gg~e~~ 262 (361)
T TIGR01366 212 SGRWVPEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQIDWMNGNGGLDWA 262 (361)
T ss_pred CCCCCchhhhHHHHHhccccCCCCCCchHHHHHHHHHHHHHHHHccCHHHH
Confidence 3321 122333332221123445899999999999999999987445443
No 109
>PRK08363 alanine aminotransferase; Validated
Probab=99.80 E-value=3.4e-18 Score=164.88 Aligned_cols=203 Identities=16% Similarity=0.143 Sum_probs=140.6
Q ss_pred cCceeeCCCC-----CCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCC--CCCCCceeEEEC
Q 018231 47 KGLELIPSEN-----FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRL--DPEKWGVNVQSL 119 (359)
Q Consensus 47 ~~i~l~~~~~-----~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~--~~~~~~~~v~~t 119 (359)
..|+|..+.. ++++.+.+++.+.+.... ..|+...+..++++++.+++.+.+|. +++ +|++|
T Consensus 31 ~~i~l~~g~p~~~~~~p~~~~~~~~~~~~~~~~-------~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~----~i~it 99 (398)
T PRK08363 31 KVIRLNIGDPVKFDFQPPEHMKEAYCRAIKEGH-------NYYGPSEGLPELREAIVKREKRKNGVDITPD----DVRVT 99 (398)
T ss_pred CeEEEeCCCCCcCCCCCCHHHHHHHHHHHHcCC-------CCCCCCCCcHHHHHHHHHHHHHhcCCCCChh----hEEEe
Confidence 4588887665 478889999988775421 12333355677887777777776664 554 59999
Q ss_pred CChH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcE
Q 018231 120 SGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKL 198 (359)
Q Consensus 120 sG~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~ 198 (359)
+|++ ++..++.+++++||.|++++++|.++.. .+...|.....++ ..+++++.+|++++++.+++ ++++
T Consensus 100 ~G~~~al~~~~~~~~~~gd~Vl~~~p~y~~~~~--------~~~~~g~~~v~~~-~~~~~~~~~d~~~l~~~~~~-~~~~ 169 (398)
T PRK08363 100 AAVTEALQLIFGALLDPGDEILIPGPSYPPYTG--------LVKFYGGVPVEYR-TIEEEGWQPDIDDIRKKITE-KTKA 169 (398)
T ss_pred CCHHHHHHHHHHHhCCCCCEEEEcCCCCcchHH--------HHHHcCCEEEEec-cccccCCcCCHHHHHhhCCc-ceEE
Confidence 9999 8887889999999999999966654432 3344454443332 24435668999999999877 8899
Q ss_pred EEEc-CCC-CCChhh---HHHHHHHHHHcCCEEEEeccccccccccCCCC-CCCCC--ceEEEeCCCCcCCC--CCceEE
Q 018231 199 IVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIP-SPFEY--ADVVTTTTHKSLRG--PRGAMI 268 (359)
Q Consensus 199 v~l~-~~n-~g~~~~---l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~-~~~~~--~D~v~~s~~K~l~g--p~gG~l 268 (359)
++++ |+| ||...+ +++|.++|+++|+++|+|+++........... ..+.. --+++.|++|+++. .+-|++
T Consensus 170 v~l~~p~NPtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~ 249 (398)
T PRK08363 170 IAVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGKHVSPGSLTKDVPVIVMNGLSKVYFATGWRLGYI 249 (398)
T ss_pred EEEECCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCcccCHHHcCcCCcEEEEecchhccCCccceEEEE
Confidence 8887 888 886655 88899999999999999999754222110000 00111 23668899998643 333999
Q ss_pred EE
Q 018231 269 FF 270 (359)
Q Consensus 269 ~~ 270 (359)
++
T Consensus 250 ~~ 251 (398)
T PRK08363 250 YF 251 (398)
T ss_pred EE
Confidence 98
No 110
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=99.80 E-value=7.1e-18 Score=163.97 Aligned_cols=205 Identities=12% Similarity=0.033 Sum_probs=144.4
Q ss_pred cCceeeCCCC------CCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCC--CCCCCceeEEE
Q 018231 47 KGLELIPSEN------FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRL--DPEKWGVNVQS 118 (359)
Q Consensus 47 ~~i~l~~~~~------~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~--~~~~~~~~v~~ 118 (359)
+.|+|..|++ ++++++.+++.+.+......+ |+...+..++++++.+++.+.+|. +++ +|++
T Consensus 53 ~~i~l~~G~P~~~~~~~~~~~~~~a~~~al~~~~~~~------Y~~~~G~~~lr~aia~~~~~~~~~~~~~~----~v~i 122 (430)
T PLN00145 53 PVLPLGHGDPSAFPCFRTAPEAEDAVAAALRSGKYNS------YSTCVGLLPARRAIAEYLSRDLPYELSTD----DIYL 122 (430)
T ss_pred CeeeCCCCCCCCCCCCCCCHHHHHHHHHHHHcCcCCC------CCCCccCHHHHHHHHHHHhhccCCCCChh----hEEE
Confidence 5788876654 357899999998876532112 333355677887777777766665 443 5999
Q ss_pred CCChH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCc
Q 018231 119 LSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPK 197 (359)
Q Consensus 119 tsG~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k 197 (359)
|+|++ ++.+++.++++|||+|+++++.|+ .+...+...|.+++.+++..+ +++.+|++++++.+++ +++
T Consensus 123 t~G~~~al~l~~~~l~~~Gd~Vlv~~P~y~--------~y~~~~~~~g~~~~~~~~~~~-~~~~~d~~~l~~~~~~-~~~ 192 (430)
T PLN00145 123 TAGCAQAIEIIMSVLAQPGANILLPRPGYP--------LYEARAVFSGLEVRHFDLLPE-RGWEVDLEGVEALADE-NTV 192 (430)
T ss_pred eCCHHHHHHHHHHHhcCCCCEEEEcCCCCc--------cHHHHHHHcCCEEEEeeCCcc-cCCcCCHHHHHHHhCc-Cce
Confidence 99999 888788999999999999995444 333344556766666654322 4688999999998887 888
Q ss_pred EEEEc-CCC-CCChhh---HHHHHHHHHHcCCEEEEeccccccccccCCCCCCC---C--CceEEEeCCCCcCC--CCCc
Q 018231 198 LIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPF---E--YADVVTTTTHKSLR--GPRG 265 (359)
Q Consensus 198 ~v~l~-~~n-~g~~~~---l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~---~--~~D~v~~s~~K~l~--gp~g 265 (359)
+++++ |+| ||.+.+ +++|.++|+++|++||+|+++..-... +....++ . ..-+++.|.+|.+. |.+-
T Consensus 193 ~i~i~~P~NPtG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~-~~~~~~~~~~~~~~~vi~~~S~SK~~~~pG~Rl 271 (430)
T PLN00145 193 AMVIINPNNPCGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFG-SKPFVPMGVFGEVAPVLTLGSISKRWVVPGWRL 271 (430)
T ss_pred EEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccchhhccC-CCCccchhhhcccCcEEEEeccccccCCCCeeE
Confidence 88887 888 897665 778889999999999999997532221 1111111 1 13488999999864 3444
Q ss_pred eEEEEeC
Q 018231 266 AMIFFRK 272 (359)
Q Consensus 266 G~l~~~~ 272 (359)
|++++.+
T Consensus 272 G~iv~~~ 278 (430)
T PLN00145 272 GWIATCD 278 (430)
T ss_pred EEEEEec
Confidence 9999854
No 111
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=99.80 E-value=1.6e-18 Score=163.48 Aligned_cols=210 Identities=20% Similarity=0.200 Sum_probs=142.2
Q ss_pred cHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHhhcCCCC
Q 018231 59 SVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHD 137 (359)
Q Consensus 59 ~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~al~~~Gd 137 (359)
.|.++++..+.+.. | + +. .++.+.+++.+++++|+++++ +++++|+. ++..++.++++|||
T Consensus 35 ~~~~~~~~~~~~~~-~--~-------g~----~~~~~~Le~~lA~~~g~~~e~----ilv~~gg~~a~~~~~~al~~~gd 96 (346)
T TIGR03576 35 GFKIDEEDLELLET-Y--V-------GP----AIFEEKVQELGREHLGGPEEK----ILVFNRTSSAILATILALEPPGR 96 (346)
T ss_pred ChhHHHHHHHHHHH-h--c-------CC----HHHHHHHHHHHHHHcCCCcce----EEEECCHHHHHHHHHHHhCCCCC
Confidence 57888888877765 3 1 11 133344669999999997653 88888888 99989999999999
Q ss_pred eeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc-CCCCCCh---hhHH
Q 018231 138 RIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASAYARL---YDYE 213 (359)
Q Consensus 138 ~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n~g~~---~~l~ 213 (359)
+|+++.++.+.|. .+..++.+.|+++ +. . .|+++++. .+ ++++|+++ .+++|.+ .+++
T Consensus 97 ~Vli~~~d~p~~~-----s~~~~~~l~ga~~--~~--~------~~l~~l~~--~~-~~~lIiitg~s~~G~v~~~~~L~ 158 (346)
T TIGR03576 97 KVVHYLPEKPAHP-----SIPRSCKLAGAEY--FE--S------DELSELKK--ID-GTSLVVITGSTMDLKVVSEEDLK 158 (346)
T ss_pred EEEECCCCCCCch-----hHHHHHHHcCCEE--ec--c------CCHHHHhh--Cc-CceEEEEECCCCCCcccCHHHHH
Confidence 9998654444332 2222455566543 21 1 15565433 23 68888887 4447765 6899
Q ss_pred HHHHHHHHcCCEEEEecccccccccc-CCCCCCCCCceEEEeCCCCcCCCCCceEEEEeCCcchhccCCcchhhhHHHhh
Q 018231 214 RIRKVCNKQKAIMLADMAHISGLVAA-GVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKI 292 (359)
Q Consensus 214 ~i~~la~~~~~~vivD~a~~~g~~~~-~~~~~~~~~~D~v~~s~~K~l~gp~gG~l~~~~~~~~~~~~g~~~~~~~~~~~ 292 (359)
+|+++|+++|+++++|+||+.|+... +.....-.+.|+++.|++|+++|+++|++++++ ++.+.+
T Consensus 159 ~i~~la~~~~~~livDEAy~~~~~~~~~~~~~~~~~~divv~s~SKalaG~r~G~v~~~~--------------~li~~l 224 (346)
T TIGR03576 159 RVIKQAKSKEAIVLVDDASGARVRRLYGQPPALDLGADLVVTSTDKLMDGPRGGLLAGRK--------------ELVDKI 224 (346)
T ss_pred HHHHHHHHcCCEEEEECCccccccccCCCCCHHHcCCcEEEeccchhccccceEEEEeCH--------------HHHHHH
Confidence 99999999999999999998775421 111000013799999999999899999999987 555555
Q ss_pred ccccCCCCCCCCcHHHHHHHHHHHHHH
Q 018231 293 NQAVFPGLQGGPHNHTITGLAVALKQV 319 (359)
Q Consensus 293 ~~~~~~~~~gt~~~~~i~al~~Al~~~ 319 (359)
.....+..+ +.+.+..+|..+||+.+
T Consensus 225 ~~~~~~~~~-s~~~~~~~aa~~aL~~~ 250 (346)
T TIGR03576 225 KSVGEQFGL-EAQAPLLAAVVRALEEF 250 (346)
T ss_pred HHhhcCccc-CccHHHHHHHHHHHhhc
Confidence 544333333 34556767777888653
No 112
>PRK07324 transaminase; Validated
Probab=99.80 E-value=1.2e-18 Score=166.49 Aligned_cols=199 Identities=21% Similarity=0.194 Sum_probs=133.6
Q ss_pred cCceeeCCCC--CCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcC-CCCCCCceeEEECCChH
Q 018231 47 KGLELIPSEN--FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFR-LDPEKWGVNVQSLSGSP 123 (359)
Q Consensus 47 ~~i~l~~~~~--~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g-~~~~~~~~~v~~tsG~~ 123 (359)
+.++|..++. ++|+.+ +++.+.+.+.. .+| +...+..+++ +.++++++ ++++ +|++|+|++
T Consensus 27 ~~~~~~~~e~~~~~~~~~-~~~~~~~~~~~-~~Y------~~~~G~~~lr----~~ia~~~~~~~~~----~vi~t~G~~ 90 (373)
T PRK07324 27 CIDSLTLEELLALAGKNP-EAFYQELGQKK-LTY------GWIEGSPEFK----EAVASLYQNVKPE----NILQTNGAT 90 (373)
T ss_pred CCCCCcHHHHHhccCcch-HHHHHHHhcCC-ccC------CCCCCCHHHH----HHHHHHhcCCChh----hEEEcCChH
Confidence 3456655554 346666 77777665421 122 2224445555 56666654 5664 499999999
Q ss_pred -HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc
Q 018231 124 -SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG 202 (359)
Q Consensus 124 -a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~ 202 (359)
++.+++.++++|||+|+++.+.|. .+...+...|.+++.++++.+ +++.+|++++++.+++ ++|+++++
T Consensus 91 ~al~~~~~~l~~~gd~Vl~~~P~y~--------~~~~~~~~~g~~v~~v~~~~~-~~~~~d~~~l~~~~~~-~~kli~i~ 160 (373)
T PRK07324 91 GANFLVLYALVEPGDHVISVYPTYQ--------QLYDIPESLGAEVDYWQLKEE-NGWLPDLDELRRLVRP-NTKLICIN 160 (373)
T ss_pred HHHHHHHHHhCCCCCEEEEcCCCch--------hHHHHHHHcCCEEEEEecccc-cCCCCCHHHHHHhCCC-CCcEEEEe
Confidence 888899999999999999885443 333344556766766654322 3567899999998887 89999998
Q ss_pred -CCC-CCChhh---HHHHHHHHHHcCCEEEEeccccccccccCCCCCC--CCCceEEEeCCCCcCC--CCCceEEEEeC
Q 018231 203 -ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP--FEYADVVTTTTHKSLR--GPRGAMIFFRK 272 (359)
Q Consensus 203 -~~n-~g~~~~---l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~--~~~~D~v~~s~~K~l~--gp~gG~l~~~~ 272 (359)
|+| ||...+ +++|+++|++||+++|+|+++.. .......... .....+++.|++|.++ |.+-|++++++
T Consensus 161 ~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De~y~~-l~~~~~~~s~~~~~~~~I~~~s~SK~~~~~G~RiG~i~~~~ 238 (373)
T PRK07324 161 NANNPTGALMDRAYLEEIVEIARSVDAYVLSDEVYRP-LDEDGSTPSIADLYEKGISTNSMSKTYSLPGIRVGWIAANE 238 (373)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccc-cccCCCCCChhhccCCEEEEecchhhcCCccceeEEEecCH
Confidence 888 897766 88899999999999999999742 2221100100 0113478889999874 33349999865
No 113
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=99.80 E-value=3.2e-18 Score=163.28 Aligned_cols=184 Identities=14% Similarity=0.127 Sum_probs=131.2
Q ss_pred CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHhh-cCC
Q 018231 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTAL-LKP 135 (359)
Q Consensus 58 ~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~al-~~~ 135 (359)
.+++.++++.+.+.+.+. ++......+ +.+++++++|.+. +++|+|++ ++..++.++ ++|
T Consensus 9 ~~~~e~~a~~~~~~~~~~--------~~~g~~~~~----~e~~la~~~g~~~------~v~~~sgt~aL~~~l~al~~~p 70 (376)
T TIGR02379 9 VTGQELEYIAEAISEGKL--------SGDGPFSRR----CETWLENRTGTKK------ALLTPSCTAALEMAALLLDIQP 70 (376)
T ss_pred CCHHHHHHHHHHHHcCCc--------cCCcHHHHH----HHHHHHHHhCCCe------EEEeCCHHHHHHHHHHHcCCCC
Confidence 466778888888776331 111122344 4478888888764 78888888 777677887 899
Q ss_pred CCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCChhhHHHH
Q 018231 136 HDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERI 215 (359)
Q Consensus 136 Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~~~n~g~~~~l~~i 215 (359)
||+|++++++|.+... .+...|++++.+ +++++++.+|++++++++++ +||+|+.+. .+|...++++|
T Consensus 71 Gd~Viv~~~t~~~~~~--------~~~~~G~~~v~v--d~d~~~~~~d~~~le~~i~~-~tk~Iip~~-~~G~~~d~~~I 138 (376)
T TIGR02379 71 GDEVIMPSYTFVSTAN--------AFVLRGAKIVFV--DIRPDTMNIDETLIESAITH-RTKAIVPVH-YAGVACDMDTI 138 (376)
T ss_pred cCEEEECCCCcHHHHH--------HHHHcCCEEEEE--ecCCCcCCCCHHHHHHhcCc-CceEEEEeC-CCCCccCHHHH
Confidence 9999999987776543 233457666555 45645678999999999987 899986432 27888899999
Q ss_pred HHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEeCCC--CcCC-CCCceEEEEeCC
Q 018231 216 RKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTH--KSLR-GPRGAMIFFRKG 273 (359)
Q Consensus 216 ~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~--K~l~-gp~gG~l~~~~~ 273 (359)
.++|++||++||+|++|+.|....+..... ..|+.++|+| |.+. |+.||+++++++
T Consensus 139 ~~la~~~~i~vIeDaa~~~g~~~~~~~~g~--~~~~~~fSf~~~K~l~~g~~gG~v~~~~~ 197 (376)
T TIGR02379 139 MALANKHQLFVIEDAAQGVMSTYKGRALGS--IGHLGTFSFHETKNYTSGGEGGALLINDQ 197 (376)
T ss_pred HHHHHHCCCEEEEECccccCCccCCcccCC--CCCEEEEeCCCCCcCcccCCceEEEECCH
Confidence 999999999999999999887533322211 1366667765 5554 568899988864
No 114
>PRK03317 histidinol-phosphate aminotransferase; Provisional
Probab=99.80 E-value=2.6e-18 Score=163.99 Aligned_cols=234 Identities=13% Similarity=0.072 Sum_probs=155.1
Q ss_pred CceeeCCCCC--CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCC--CCCCCceeEEECCChH
Q 018231 48 GLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRL--DPEKWGVNVQSLSGSP 123 (359)
Q Consensus 48 ~i~l~~~~~~--~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~--~~~~~~~~v~~tsG~~ 123 (359)
.++|..++++ +|+.+++++.+.+.... . ....|+. .+...+++++.+++.+.+|. +++ +|++|+|++
T Consensus 28 ~i~l~~~~~~~~~~~~~~~al~~~l~~~~--~--~~~~Y~~-~g~~~lr~aia~~~~~~~~~~~~~~----~I~it~G~~ 98 (368)
T PRK03317 28 PVRLNTNENPYPPSPALVADIAEAVAEAA--A--GLNRYPD-RDAVALRADLAAYLTAQTGVGLTVE----NVWAANGSN 98 (368)
T ss_pred eeEecCCCCCCCCCHHHHHHHHHHHhhhh--h--hhccCCC-CchHHHHHHHHHHhhhhccCCCChh----hEEECCCHH
Confidence 5888887775 68889999988765311 0 0112332 23566777777777777665 554 599999999
Q ss_pred -HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc
Q 018231 124 -SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG 202 (359)
Q Consensus 124 -a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~ 202 (359)
++..++.++++|||.|+++.|.|+ .+...+...|.++ ++++.+ +++.+|++++++++.+.++++++++
T Consensus 99 ~~l~~~~~~~~~~gd~v~v~~P~y~--------~~~~~~~~~g~~~--~~~~~~-~~~~~d~~~l~~~~~~~~~~~i~l~ 167 (368)
T PRK03317 99 EILQQLLQAFGGPGRTALGFVPSYS--------MHPIIARGTHTEW--VEGPRA-ADFTLDVDAAVAAIAEHRPDVVFLT 167 (368)
T ss_pred HHHHHHHHHhcCCCCEEEEeCCChH--------HHHHHHHhcCCee--EEcccC-CCCCCCHHHHHHHHhccCCCEEEEe
Confidence 888889999999999999985444 3333444455444 444444 5678999999999875578998887
Q ss_pred -CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCC-C--CceEEEeCCCCcCC--CCCceEEEEeCCcc
Q 018231 203 -ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPF-E--YADVVTTTTHKSLR--GPRGAMIFFRKGVK 275 (359)
Q Consensus 203 -~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~-~--~~D~v~~s~~K~l~--gp~gG~l~~~~~~~ 275 (359)
|+| +|...+.+++.++++..++++|+|++|+.-........... . .-.+++.|++|.++ |.+-|+++.++
T Consensus 168 ~p~NPtG~~~~~~~l~~l~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~~~~~--- 244 (368)
T PRK03317 168 SPNNPTGTALPLDDVEAILDAAPGIVVVDEAYAEFRRSGTPSALTLLPEYPRLVVSRTMSKAFAFAGGRLGYLAAAP--- 244 (368)
T ss_pred CCCCCCCCCCCHHHHHHHHHHCCceEEEeCCchhhcccCCcCHHHHHHhCCCEEEEEechhhhccchhhhhhhhCCH---
Confidence 888 99999999999999999999999999863211110000000 0 12367889999875 33339998876
Q ss_pred hhccCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHH
Q 018231 276 EINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQ 318 (359)
Q Consensus 276 ~~~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~ 318 (359)
++.+.+.....+ + +.+.+..+++.++++.
T Consensus 245 -----------~~~~~l~~~~~~--~-~~s~~~~~a~~~~l~~ 273 (368)
T PRK03317 245 -----------AVVDALRLVRLP--Y-HLSAVTQAAARAALRH 273 (368)
T ss_pred -----------HHHHHHHhcCCC--C-CCCHHHHHHHHHHhhC
Confidence 555555433211 2 3344555555566643
No 115
>PRK05937 8-amino-7-oxononanoate synthase; Provisional
Probab=99.79 E-value=4.4e-18 Score=162.52 Aligned_cols=191 Identities=18% Similarity=0.124 Sum_probs=130.8
Q ss_pred HHHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEeccc
Q 018231 96 LCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL 175 (359)
Q Consensus 96 ~~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 175 (359)
.+++.+++++|++. .+++++|+.++..++..+.++||.|++...+|++.+.+.... .+. .+.++
T Consensus 60 ~~e~~la~~~~~~~-----~l~~~sG~~a~~~~~~~~~~~~d~ii~d~~~H~sv~~~~~~~-------~~~---~~~~~- 123 (370)
T PRK05937 60 DLEHKIAHFHGAPE-----AFIVPSGYMANLGLCAHLSSVTDYVLWDEQVHISVVYSLSVI-------SGW---HQSFR- 123 (370)
T ss_pred HHHHHHHHHhCCCe-----EEEECChHHHHHHHHHHhCCCCCEEEEEhhhhHHHHHHHHHc-------CCc---eEEec-
Confidence 36699999999964 499999999888666666788999998888888876643311 111 12222
Q ss_pred CCCCCCCCHHHHHHHhhhh-----CCcEEEEc-CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCC----CC
Q 018231 176 NESTGYIDYDQLEKSATLF-----RPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVI----PS 244 (359)
Q Consensus 176 ~~~~~~~d~e~l~~~i~~~-----~~k~v~l~-~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~----~~ 244 (359)
..|+++|++.+++. ++++|+++ ++| +|.+.|+++|.++|+++|+++++|++|+.|.++.+.. .+
T Consensus 124 -----~~d~~~l~~~l~~~~~~~~~~~~v~v~~v~s~~G~i~pl~eI~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~ 198 (370)
T PRK05937 124 -----HNDLDHLESLLESCRQRSFGRIFIFVCSVYSFKGTLAPLEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCHSL 198 (370)
T ss_pred -----CCCHHHHHHHHHhhhccCCCcEEEEEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhh
Confidence 34899999988731 34455566 555 8999999999999999999999999999998776542 22
Q ss_pred CCCCceEEEeCCCCcCCCCCceEEEEeCCcchhccCCcchhhhHHHhhccccCCCCC-CCCcHHHHHHHHHHHHHHhcc
Q 018231 245 PFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQ-GGPHNHTITGLAVALKQVCTL 322 (359)
Q Consensus 245 ~~~~~D~v~~s~~K~l~gp~gG~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-gt~~~~~i~al~~Al~~~~~~ 322 (359)
++...++++.|++|.+ ||.|+.++..+ +....+.....+..+ ++.+.+.++|+.+|++++.++
T Consensus 199 ~~~~~~~~~~tlsK~~-g~~G~~vl~~~--------------~~~~~~~~~~~~~~~s~~~~~~~~~a~~aal~~l~~~ 262 (370)
T PRK05937 199 GYENFYAVLVTYSKAL-GSMGAALLSSS--------------EVKQDLMLNSPPLRYSTGLPPHLLISIQVAYDFLSQE 262 (370)
T ss_pred CCCCCcEEEEechhhh-hcCceEEEcCH--------------HHHHHHHHhCCCCeecCCCCHHHHHHHHHHHHHHHhC
Confidence 2222346677888976 66775455544 222222211123333 456677889999999998765
No 116
>PLN02822 serine palmitoyltransferase
Probab=99.79 E-value=6.7e-18 Score=165.86 Aligned_cols=234 Identities=15% Similarity=0.139 Sum_probs=151.0
Q ss_pred cCceeeCCCC---CCcHHHHHHHHhhhhccCCCCCCCCc-ccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCCh
Q 018231 47 KGLELIPSEN---FTSVSVMQAVGSVMTNKYSEGYPGAR-YYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGS 122 (359)
Q Consensus 47 ~~i~l~~~~~---~~~~~v~~al~~~~~~~~~~g~~~~~-~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~ 122 (359)
+.++|..+.. ..++.+++++.+.+.+ |..++.+.+ +|+..+...+ +++.++++++.+. .|++++|.
T Consensus 110 ~~id~~s~~~lgl~~~~~i~ea~~~al~~-~G~g~~g~r~~yg~~~~~~~----Lee~La~~~~~~~-----~i~~s~G~ 179 (481)
T PLN02822 110 DVVNFASANYLGLIGNEKIKESCTSALEK-YGVGSCGPRGFYGTIDVHLD----CETKIAKFLGTPD-----SILYSYGL 179 (481)
T ss_pred eEEEeECCCcCCCCCCHHHHHHHHHHHHH-hCCCCcccCccccCHHHHHH----HHHHHHHHhCCCC-----EEEECCHH
Confidence 3477765533 3589999999998876 533444433 3444444454 4488999998653 49999998
Q ss_pred HHHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhh--------h
Q 018231 123 PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL--------F 194 (359)
Q Consensus 123 ~a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~--------~ 194 (359)
+++..++.+++++||.|++....|.++.. ++.+.+.++..+ +.+ |.++++..+++ .
T Consensus 180 ~a~~sai~a~~~~gd~Ii~d~~~H~s~~~--------~~~ls~~~~~~~--~~n------d~~~l~~~l~~~~~~~~~~~ 243 (481)
T PLN02822 180 STIFSVIPAFCKKGDIIVADEGVHWGIQN--------GLYLSRSTIVYF--KHN------DMESLRNTLEKLTAENKRKK 243 (481)
T ss_pred HHHHHHHHHhCCCCCEEEEeCCccHHHHH--------HHHHcCCeEEEE--CCC------CHHHHHHHHHHHhhhhcccC
Confidence 87777999999999999977655544321 344555555444 343 44555444421 1
Q ss_pred CC-cEEEEc--CCCCCChhhHHHHHHHHHHcCCEEEEeccccccccccCC----CCCCC--CCceEEEeCCCCcCCCCCc
Q 018231 195 RP-KLIVAG--ASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGV----IPSPF--EYADVVTTTTHKSLRGPRG 265 (359)
Q Consensus 195 ~~-k~v~l~--~~n~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~----~~~~~--~~~D~v~~s~~K~l~gp~g 265 (359)
++ ++|++. .+++|.+.|+++|.++|++||+++|+|++|++|.+...- ...+. ...|+++.|.+|+++ ..|
T Consensus 244 ~~~~~Ivve~i~~~~G~i~~L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G~~e~~~v~~~~~dii~~s~sKalg-~~G 322 (481)
T PLN02822 244 KLRRYIVVEAIYQNSGQIAPLDEIVRLKEKYRFRVLLDESNSFGVLGKSGRGLSEHFGVPIEKIDIITAAMGHALA-TEG 322 (481)
T ss_pred CCcEEEEEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCChHHHcCCCCCCCeEEEecchhhhh-hCC
Confidence 34 577775 444899999999999999999999999999977653110 11111 137999999999984 567
Q ss_pred eEEEEeCCcchhccCCcchhhhHHHhhccccCCCCC-CCCcHHHHHHHHHHHHHHhc
Q 018231 266 AMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQ-GGPHNHTITGLAVALKQVCT 321 (359)
Q Consensus 266 G~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-gt~~~~~i~al~~Al~~~~~ 321 (359)
|++++++ ++.+.+........+ ++.+....+|..+||+.+.+
T Consensus 323 G~i~g~~--------------~ii~~~~~~~~~~~fsa~lPp~~~~Aa~~aL~~l~~ 365 (481)
T PLN02822 323 GFCTGSA--------------RVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLED 365 (481)
T ss_pred eEEEcCH--------------HHHHHHHhcCCceeeccccCHHHHHHHHHHHHHHHh
Confidence 8888877 444443322222233 23233444455567877654
No 117
>PLN02231 alanine transaminase
Probab=99.79 E-value=1.2e-17 Score=165.51 Aligned_cols=227 Identities=12% Similarity=0.077 Sum_probs=152.9
Q ss_pred cccChHHHHHHHHHHHHhhcCceeeCCCCCCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCC
Q 018231 28 EVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRL 107 (359)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~ 107 (359)
.+.++..++.+... ....+.|++.++....|..+++...+.+.+.. + .....|+...+..++++++.+++.+..|.
T Consensus 112 ~~~~~~~~r~v~~~-~~~p~~i~~~~~~~~fp~~~i~~a~~~l~~~~--~-~~~~~Y~~s~G~~~lReaIA~~~~~r~g~ 187 (534)
T PLN02231 112 GQQPITFFREVLAL-CDHPSLLDKSETHGLFSADAIERAWQILDQIP--G-RATGAYSHSQGIKGLRDAIAAGIEARDGF 187 (534)
T ss_pred CCCccHHHHHHHHh-ccCCccCCCCCccccCCHHHHHHHHHHHHhcC--C-ccccCcCCCCCcHHHHHHHHHHHHhccCC
Confidence 44566666666554 23346688877666677777777777665421 1 01123555677888998888999887775
Q ss_pred CCCCCceeEEECCChH-HHHHHHHhhc-CCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCC-CCCCCCH
Q 018231 108 DPEKWGVNVQSLSGSP-SNFQVYTALL-KPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNE-STGYIDY 184 (359)
Q Consensus 108 ~~~~~~~~v~~tsG~~-a~~~~~~al~-~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~-~~~~~d~ 184 (359)
+.+. .+|++|+|++ ++..++.+++ .+||.|+++. |.|+.+...+...|..++.++ +++ ++|.+|+
T Consensus 188 ~~~p--e~I~iT~Ga~~ai~~~~~~l~~~~gd~Vli~~--------P~Y~~y~~~~~~~g~~~v~~~--l~~~~~~~~d~ 255 (534)
T PLN02231 188 PADP--NDIFLTDGASPAVHMMMQLLIRSEKDGILCPI--------PQYPLYSASIALHGGTLVPYY--LDEATGWGLEI 255 (534)
T ss_pred CCCc--ccEEEeCCHHHHHHHHHHHhccCCCCEEEEeC--------CCChhHHHHHHHcCCEEEEEe--cCcccCCCCCH
Confidence 3221 2599999999 8887888887 4899999999 444444445556676665554 543 3579999
Q ss_pred HHHHHHhhhh-----CCcEEEEc-CCC-CCChh---hHHHHHHHHHHcCCEEEEeccccccccccCCCCCCC--------
Q 018231 185 DQLEKSATLF-----RPKLIVAG-ASA-YARLY---DYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPF-------- 246 (359)
Q Consensus 185 e~l~~~i~~~-----~~k~v~l~-~~n-~g~~~---~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~-------- 246 (359)
++|++.+++. ++|+++++ |+| ||.+. .+++|+++|+++|++||+|+++..-....+.....+
T Consensus 256 ~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g 335 (534)
T PLN02231 256 SELKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMG 335 (534)
T ss_pred HHHHHHHHHHhhcCCCeEEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCcccHHHHHhhhc
Confidence 9999988652 57887776 888 99554 577889999999999999999753222111110010
Q ss_pred -C--Cc-eEEEeCCCCcCC---CCCceEEEE
Q 018231 247 -E--YA-DVVTTTTHKSLR---GPRGAMIFF 270 (359)
Q Consensus 247 -~--~~-D~v~~s~~K~l~---gp~gG~l~~ 270 (359)
. .. -+.+.|.+|.+. |.++|++++
T Consensus 336 ~~~~~~~vi~l~S~SK~~~g~pGlRiGy~~~ 366 (534)
T PLN02231 336 YGEKDISLVSFQSVSKGYYGECGKRGGYMEV 366 (534)
T ss_pred cccCCceEEEEeccCcccccCCccceEEEEE
Confidence 0 01 256779999763 666699886
No 118
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=99.79 E-value=6.7e-18 Score=163.91 Aligned_cols=210 Identities=17% Similarity=0.269 Sum_probs=140.4
Q ss_pred ChHHHHHHHHHHHHhhcCceeeCCCCC-------CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHH
Q 018231 31 DPEIADIIEHEKARQWKGLELIPSENF-------TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALE 103 (359)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~i~l~~~~~~-------~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~ 103 (359)
...++.++.++..-......|..++.. .++...+++.+.+...+ .+.+ ....++ ++.+++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~a~~~~~~~~~--------~~~G-~~~~~f----e~~lA~ 74 (438)
T PRK15407 8 RQQILELVREYAELAHAPKPFVPGKSPIPPSGKVIDAKELQNLVDASLDFW--------LTTG-RFNDAF----EKKLAE 74 (438)
T ss_pred HHHHHHHHHHHHHHhcccccccCCCCCCCcCccCCCHHHHHHHHHHHHhCc--------ccCC-hhHHHH----HHHHHH
Confidence 344556666655444455556555542 23344444444444311 1111 223444 478899
Q ss_pred HcCCCCCCCceeEEECC-ChHHHHHHHHhh---------cCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEec
Q 018231 104 AFRLDPEKWGVNVQSLS-GSPSNFQVYTAL---------LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPY 173 (359)
Q Consensus 104 ~~g~~~~~~~~~v~~ts-G~~a~~~~~~al---------~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~ 173 (359)
++|.+. +++++ |+.++..++.++ ++|||+|+++.++|.++..+ +...|..++.+
T Consensus 75 ~~g~~~------~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~--------v~~~G~~pv~v-- 138 (438)
T PRK15407 75 FLGVRY------ALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNP--------IIQNGLVPVFV-- 138 (438)
T ss_pred HhCCCe------EEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHHH--------HHHcCCEEEEE--
Confidence 999864 45555 555777677665 58999999999888766442 23346555444
Q ss_pred ccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEE
Q 018231 174 RLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVT 253 (359)
Q Consensus 174 ~~~~~~~~~d~e~l~~~i~~~~~k~v~l~~~n~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~ 253 (359)
+++++++.+|++++++.+++ ++++|++++. +|...++++|.++|+++|++||+|++|+.|....+.....+ .|+.+
T Consensus 139 dvd~~~~~id~~~le~~i~~-~tkaVi~~~~-~G~p~dl~~I~~la~~~gi~vIeDaa~a~G~~~~g~~~G~~--gd~~~ 214 (438)
T PRK15407 139 DVELPTYNIDASLLEAAVSP-KTKAIMIAHT-LGNPFDLAAVKAFCDKHNLWLIEDNCDALGSTYDGRMTGTF--GDIAT 214 (438)
T ss_pred ecCCCcCCcCHHHHHHHcCc-CCeEEEEeCC-CCChhhHHHHHHHHHHCCCEEEEECccchhhhcCCeeeecc--CceEE
Confidence 45545788999999999987 8999888643 57778999999999999999999999999998765433222 26666
Q ss_pred eCC--CCcCCCCCceEEEEeCC
Q 018231 254 TTT--HKSLRGPRGAMIFFRKG 273 (359)
Q Consensus 254 ~s~--~K~l~gp~gG~l~~~~~ 273 (359)
+|+ .|.+.+..||+++++++
T Consensus 215 fSf~~~k~~~~geGG~l~t~d~ 236 (438)
T PRK15407 215 LSFYPAHHITMGEGGAVFTNDP 236 (438)
T ss_pred EeCCCCCCccccCceEEEECCH
Confidence 665 47787777899999986
No 119
>PRK04366 glycine dehydrogenase subunit 2; Validated
Probab=99.79 E-value=1.4e-17 Score=163.76 Aligned_cols=199 Identities=14% Similarity=0.142 Sum_probs=139.5
Q ss_pred eCCCCCCcHHHHHHHHhhhhccCCCCCCCCcccC--CchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChHHHHH--
Q 018231 52 IPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYG--GNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQ-- 127 (359)
Q Consensus 52 ~~~~~~~~~~v~~al~~~~~~~~~~g~~~~~~~~--~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~-- 127 (359)
...+..++|.+.+++.+... +. ++. .|++ ...+..++...+++++++++|++. +.+..++|+++...
T Consensus 76 G~~~~~~~p~i~~~~~~~~~--~~-~~t--pYq~e~~sqG~lel~~~~~~~la~l~G~~~----~~l~~~~GA~a~~~~l 146 (481)
T PRK04366 76 GSCTMKYNPKINEKVARLPG--FA-ELH--PLQPEETVQGALELMYELQEWLKEITGMDA----VTLQPAAGAHGELTGL 146 (481)
T ss_pred cccCCCCCHHHHHHHHhCcc--hh-cCC--CCCChhhhhHHHHHHHHHHHHHHHHhCCCc----eEEEeCcHHHHHHHHH
Confidence 33445678888888876421 11 221 1111 234556677779999999999974 34666677663332
Q ss_pred -HHH-hhcCCCC----eeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEE
Q 018231 128 -VYT-ALLKPHD----RIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA 201 (359)
Q Consensus 128 -~~~-al~~~Gd----~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l 201 (359)
++. .++++|| +|+++++.|+++.. .+...|.+++.++ .+ .++.+|+++|++.+++ ++++|++
T Consensus 147 ~~~r~~~~~~Gd~~~~~Vlv~~~~hp~~~~--------~~~~~G~~vv~v~--~~-~~~~~D~e~L~~~i~~-~t~~V~v 214 (481)
T PRK04366 147 LMIRAYHEARGDTKRTEVIVPDSAHGTNPA--------SAAMAGFKVVEIP--SN-EDGLVDLEALKAAVGE-DTAALML 214 (481)
T ss_pred HHHHHHhhccCcCCCCEEEEcCCccHhHHH--------HHHHcCCEEEEee--cC-CCCCcCHHHHHhhccc-CCeEEEE
Confidence 233 3367777 99999988876653 2345677776665 44 4588999999999987 8999888
Q ss_pred cCCC-CCCh-hhHHHHHHHHHHcCCEEEEeccccccccc-cCCCCCCCCCceEEEeCCCCcCCCCC-----c-eEEEEeC
Q 018231 202 GASA-YARL-YDYERIRKVCNKQKAIMLADMAHISGLVA-AGVIPSPFEYADVVTTTTHKSLRGPR-----G-AMIFFRK 272 (359)
Q Consensus 202 ~~~n-~g~~-~~l~~i~~la~~~~~~vivD~a~~~g~~~-~~~~~~~~~~~D~v~~s~~K~l~gp~-----g-G~l~~~~ 272 (359)
+.+| +|.. .|+++|+++|+++|+++++|++|..+... .+.... |+|++++++||||++|. | |++++++
T Consensus 215 ~~Pn~tG~~~~dl~eI~~~a~~~gal~iVD~a~~~~~~g~~~~~~~---GaD~~~~~~hK~l~~P~g~Ggp~~G~l~~~~ 291 (481)
T PRK04366 215 TNPNTLGLFERNILEIAEIVHEAGGLLYYDGANLNAILGKARPGDM---GFDVVHLNLHKTFSTPHGGGGPGSGPVGVKE 291 (481)
T ss_pred eCCCCccccchHHHHHHHHHHHcCCEEEEEecChhhhcccCCcccc---CCCEEEEechhhcCCCCCCCCCCeeeeeehh
Confidence 8444 8866 58999999999999999999999866443 222222 59999999999997553 3 7898988
Q ss_pred Cc
Q 018231 273 GV 274 (359)
Q Consensus 273 ~~ 274 (359)
++
T Consensus 292 ~~ 293 (481)
T PRK04366 292 EL 293 (481)
T ss_pred hh
Confidence 65
No 120
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=99.79 E-value=4.5e-18 Score=161.11 Aligned_cols=158 Identities=18% Similarity=0.198 Sum_probs=116.8
Q ss_pred HHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhh-cCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEeccc
Q 018231 97 CQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL-LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL 175 (359)
Q Consensus 97 ~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al-~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 175 (359)
+++.+++++|.+. .+++++|+.++..++.++ +++||+|+++.++|.+...+ +...|.++..++ .
T Consensus 23 ~~~~la~~~~~~~-----~~~~~sgt~al~~~l~~l~~~~gd~vl~~~~~~~~~~~~--------~~~~g~~~~~~~--~ 87 (352)
T cd00616 23 FEKAFAEYLGVKY-----AVAVSSGTAALHLALRALGIGPGDEVIVPSFTFVATANA--------ILLLGATPVFVD--I 87 (352)
T ss_pred HHHHHHHHhCCCe-----EEEECCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHHH--------HHHcCCeEEEEe--c
Confidence 4478899999742 344444444888788888 68999999999877765432 234465555554 5
Q ss_pred CCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEeC
Q 018231 176 NESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTT 255 (359)
Q Consensus 176 ~~~~~~~d~e~l~~~i~~~~~k~v~l~~~n~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s 255 (359)
++.++.+|++++++.+++ ++++|+++. .+|...|+++|.++|+++|+++|+|++|+.|....+..... ..|+.++|
T Consensus 88 ~~~~~~~d~~~l~~~i~~-~~~~v~~~~-~~G~~~~~~~i~~l~~~~~i~li~D~a~~~g~~~~~~~~~~--~~d~~~~S 163 (352)
T cd00616 88 DPDTYNIDPELIEAAITP-RTKAIIPVH-LYGNPADMDAIMAIAKRHGLPVIEDAAQALGATYKGRKVGT--FGDAGAFS 163 (352)
T ss_pred CCCcCCcCHHHHHHhcCc-CCeEEEEEC-CCCCcCCHHHHHHHHHHcCCeEEEECCCCCCCeECCEEccc--CcceeEEc
Confidence 533688999999999976 899888753 37888899999999999999999999999887754321111 14677777
Q ss_pred C--CCcCCCCCceEEEEeCC
Q 018231 256 T--HKSLRGPRGAMIFFRKG 273 (359)
Q Consensus 256 ~--~K~l~gp~gG~l~~~~~ 273 (359)
+ +|+++++.||+++++++
T Consensus 164 ~~~~K~~~~~~gg~~~~~~~ 183 (352)
T cd00616 164 FHPTKNLTTGEGGAVVTNDE 183 (352)
T ss_pred CCCCCCCcccCceEEEECCH
Confidence 5 59997777888888763
No 121
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=99.79 E-value=6e-18 Score=159.36 Aligned_cols=221 Identities=18% Similarity=0.200 Sum_probs=158.2
Q ss_pred cCceeeCCCCCC--cHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcC-CCCCCCceeEEECCChH
Q 018231 47 KGLELIPSENFT--SVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFR-LDPEKWGVNVQSLSGSP 123 (359)
Q Consensus 47 ~~i~l~~~~~~~--~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g-~~~~~~~~~v~~tsG~~ 123 (359)
+.++|++++||. |+.+++++.+.+.. + +.|++.. ..+ +++.+++++| .+++ +|++++|++
T Consensus 23 ~~i~LssNenP~gp~~~~~~~~~~~~~~-~-------~rYPd~~-~~~----l~~a~a~~~~~~~~~----~V~~gnGsd 85 (356)
T COG0079 23 GIIKLSSNENPYGPPPKVIEAIRAALDK-L-------NRYPDPD-YRE----LRAALAEYYGVVDPE----NVLVGNGSD 85 (356)
T ss_pred cceeecCCCCCCCCCHHHHHHHHHHHHh-h-------ccCCCCc-HHH----HHHHHHHHhCCCCcc----eEEEcCChH
Confidence 468999999984 58888888887653 1 1223322 222 5588999999 5654 499999999
Q ss_pred -HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc
Q 018231 124 -SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG 202 (359)
Q Consensus 124 -a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~ 202 (359)
++..++++++.|||+|+++. |.|..|...+...|++++.++ .+ + +.+|++.+.+.+.+ ++++|++|
T Consensus 86 e~i~~l~~~~~~~gd~vl~~~--------Ptf~~Y~~~a~~~g~~~~~v~--~~-~-~~~d~~~~~~~~~~-~~~lv~i~ 152 (356)
T COG0079 86 ELIELLVRAFVEPGDTVLIPE--------PTFSMYEIAAQLAGAEVVKVP--LK-E-FRLDLDAILAAIRD-KTKLVFLC 152 (356)
T ss_pred HHHHHHHHHhhcCCCEEEEcC--------CChHHHHHHHHhcCCeEEEec--cc-c-cccCHHHHHHhhhc-CCCEEEEe
Confidence 88889999999999999999 666666667778888887775 44 3 88999999999988 89999998
Q ss_pred -CCC-CCChhhHHHHHHHHHHc--CCEEEEeccccccccccCC---CCCCCCCceEEEeCCCCcC--CCCCceEEEEeCC
Q 018231 203 -ASA-YARLYDYERIRKVCNKQ--KAIMLADMAHISGLVAAGV---IPSPFEYADVVTTTTHKSL--RGPRGAMIFFRKG 273 (359)
Q Consensus 203 -~~n-~g~~~~l~~i~~la~~~--~~~vivD~a~~~g~~~~~~---~~~~~~~~D~v~~s~~K~l--~gp~gG~l~~~~~ 273 (359)
|+| ||...+.++|.+++... +.+|++|+|.. ...+... ...+ .-=+++-|++|.| .|.+-|+++.+.
T Consensus 153 nPNNPTG~~~~~~~l~~l~~~~~~~~~vVvDEAY~-eF~~~~~~~l~~~~--~nlivlRTfSKa~gLAGlRlGy~ia~~- 228 (356)
T COG0079 153 NPNNPTGTLLPREELRALLEALPEGGLVVIDEAYI-EFSPESSLELLKYP--PNLIVLRTFSKAFGLAGLRVGYAIANP- 228 (356)
T ss_pred CCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchh-hcCCchhhhhccCC--CCEEEEEecHHhhhcchhceeeccCCH-
Confidence 888 99888888777777654 78999999963 2222111 0011 1238899999965 344449988777
Q ss_pred cchhccCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHH
Q 018231 274 VKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALK 317 (359)
Q Consensus 274 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~ 317 (359)
++.+.+++...|. +.+.++.++..+|++
T Consensus 229 -------------~~i~~l~~vr~p~---~v~~~a~~aa~aal~ 256 (356)
T COG0079 229 -------------ELIAALNKVRPPF---NVSSPALAAAIAALR 256 (356)
T ss_pred -------------HHHHHHHHhcCCC---CCCHHHHHHHHHHcc
Confidence 6777777665555 334455555555443
No 122
>PRK06107 aspartate aminotransferase; Provisional
Probab=99.79 E-value=1.2e-17 Score=161.28 Aligned_cols=208 Identities=13% Similarity=0.017 Sum_probs=140.3
Q ss_pred hcCceeeCCCCC--CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH
Q 018231 46 WKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP 123 (359)
Q Consensus 46 ~~~i~l~~~~~~--~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~ 123 (359)
.+.++|..+.+. +++.+.+++.+.+.... ..|+...+..++++++.+++++.+|.+... .+|++|+|++
T Consensus 33 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~-------~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~--~~i~~t~G~~ 103 (402)
T PRK06107 33 RSIVDLTVGEPDFDTPDHIKQAAVAAIERGE-------TKYTLVNGTPALRKAIIAKLERRNGLHYAD--NEITVGGGAK 103 (402)
T ss_pred CCEEEcCCCCCCCCCCHHHHHHHHHHHHcCC-------CCCCCCCCCHHHHHHHHHHHHHhcCCCCCh--hhEEEeCCHH
Confidence 355888876664 46888888888775421 123444566788888889999888874221 2599999998
Q ss_pred -HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc
Q 018231 124 -SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG 202 (359)
Q Consensus 124 -a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~ 202 (359)
++..++.+++++||.|+++++.|.++.. .+...+.....++++.+ +++.+|++++++.+.+ ++++++++
T Consensus 104 ~al~~~~~~~~~~gd~vl~~~p~y~~y~~--------~~~~~~~~~~~v~~~~~-~~~~~~~~~l~~~~~~-~~~~v~l~ 173 (402)
T PRK06107 104 QAIFLALMATLEAGDEVIIPAPYWVSYPD--------MVLANDGTPVIVACPEE-QGFKLTPEALEAAITP-RTRWLILN 173 (402)
T ss_pred HHHHHHHHHhcCCCCEEEEecCCCcCHHH--------HHHHcCCEEEEecCCcc-cCCCCCHHHHHhhcCc-CceEEEEE
Confidence 8777888889999999999965554421 22233433434443212 4567999999999876 88888887
Q ss_pred -CCC-CCChh---hHHHHHHHHHHc-CCEEEEeccccccccccCCCC----C-C-CCCceEEEeCCCCcCCCCC--ceEE
Q 018231 203 -ASA-YARLY---DYERIRKVCNKQ-KAIMLADMAHISGLVAAGVIP----S-P-FEYADVVTTTTHKSLRGPR--GAMI 268 (359)
Q Consensus 203 -~~n-~g~~~---~l~~i~~la~~~-~~~vivD~a~~~g~~~~~~~~----~-~-~~~~D~v~~s~~K~l~gp~--gG~l 268 (359)
|+| ||... .+++|+++|+++ ++++|+|++++.-........ . + ...--+++.|.+|.|+.|. -|++
T Consensus 174 ~p~NPtG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~ 253 (402)
T PRK06107 174 APSNPTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVTNGVSKTYAMTGWRIGYA 253 (402)
T ss_pred CCCCCCCcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccCCEEEEeccchhhcCcccceeee
Confidence 888 89655 467788889998 999999999752211110000 0 0 0113577888999884232 2999
Q ss_pred EEeC
Q 018231 269 FFRK 272 (359)
Q Consensus 269 ~~~~ 272 (359)
+.++
T Consensus 254 ~~~~ 257 (402)
T PRK06107 254 AGPA 257 (402)
T ss_pred ecCH
Confidence 8876
No 123
>PRK09265 aminotransferase AlaT; Validated
Probab=99.79 E-value=1.4e-17 Score=160.98 Aligned_cols=202 Identities=17% Similarity=0.108 Sum_probs=134.0
Q ss_pred cCceeeCCCC-----CCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHc--CCCCCCCceeEEEC
Q 018231 47 KGLELIPSEN-----FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAF--RLDPEKWGVNVQSL 119 (359)
Q Consensus 47 ~~i~l~~~~~-----~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~--g~~~~~~~~~v~~t 119 (359)
+.++|..|.. ++++.+.+++.+.+.... .| +...+..++++++.+++.... +++++ +|++|
T Consensus 34 ~~i~l~~g~p~~~~~~~~~~i~~~~~~~~~~~~--~Y------~~~~G~~~lr~~ia~~~~~~~~~~~~~~----~i~~t 101 (404)
T PRK09265 34 KILKLNIGNPAPFGFEAPDEILRDVIRNLPTAQ--GY------SDSKGLFSARKAIMQYYQQKGIPDVDVD----DIYIG 101 (404)
T ss_pred CeEEecCCCCCcCCCCCCHHHHHHHHHHhhcCC--CC------CCCCCcHHHHHHHHHHHhccCCCCCCcc----cEEEe
Confidence 5688877533 267888888877654311 23 333455566655555554322 56664 49999
Q ss_pred CChH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcE
Q 018231 120 SGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKL 198 (359)
Q Consensus 120 sG~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~ 198 (359)
+|++ ++..++.+++++||+|++++++|..... .+...|.....++++.+ +++.+|++++++.+++ ++++
T Consensus 102 ~G~~~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~--------~~~~~g~~~v~~~~~~~-~~~~~d~~~l~~~~~~-~~~~ 171 (404)
T PRK09265 102 NGVSELIVMAMQALLNNGDEVLVPAPDYPLWTA--------AVSLSGGKPVHYLCDEE-AGWFPDLDDIRSKITP-RTKA 171 (404)
T ss_pred CChHHHHHHHHHHhCCCCCEEEEeCCCCcChHH--------HHHHcCCEEEEEecccc-cCCCCCHHHHHHhccc-cceE
Confidence 9999 7777888999999999999966654322 33344555544543222 3568999999999877 8998
Q ss_pred EEEc-CCC-CCChhh---HHHHHHHHHHcCCEEEEeccccccccccCCCCCC---C-CC-ceEEEeCCCCcCC--CCCce
Q 018231 199 IVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP---F-EY-ADVVTTTTHKSLR--GPRGA 266 (359)
Q Consensus 199 v~l~-~~n-~g~~~~---l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~---~-~~-~D~v~~s~~K~l~--gp~gG 266 (359)
++++ |+| ||...+ +++|.++|+++|+++|+|+++..-... +..... + .. .-+++.|.+|.++ |.+-|
T Consensus 172 v~l~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~-~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG 250 (404)
T PRK09265 172 IVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYD-GAVHISIASLAPDLLCVTFNGLSKAYRVAGFRVG 250 (404)
T ss_pred EEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCC-CCCcCCHHHcCCCceEEEEecchhhccCcccceE
Confidence 8887 888 897776 888999999999999999997522111 100001 0 11 2256788899874 44449
Q ss_pred EEEEe
Q 018231 267 MIFFR 271 (359)
Q Consensus 267 ~l~~~ 271 (359)
+++..
T Consensus 251 ~~v~~ 255 (404)
T PRK09265 251 WMVLS 255 (404)
T ss_pred EEEEe
Confidence 99874
No 124
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=99.79 E-value=4.7e-18 Score=162.81 Aligned_cols=220 Identities=17% Similarity=0.113 Sum_probs=148.8
Q ss_pred cCceeeCCCCC--CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-
Q 018231 47 KGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP- 123 (359)
Q Consensus 47 ~~i~l~~~~~~--~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~- 123 (359)
+.|+|..|+++ +|+.+++++..... . ..|+... ..+ +++.+++++|++++ +|++|+|++
T Consensus 53 ~~i~l~~n~~p~~~~~~v~~a~~~~~~--~-------~~Yp~~~-~~~----lr~~ia~~~~~~~~----~I~~t~Ga~~ 114 (380)
T PLN03026 53 DIVKLDANENPYGPPPEVLEALGNMKF--P-------YVYPDPE-SRR----LRAALAEDSGLESE----NILVGCGADE 114 (380)
T ss_pred ceEEccCCCCCCCCCHHHHHHHHhhHh--h-------ccCCCCC-HHH----HHHHHHHHhCcChh----hEEEcCCHHH
Confidence 56899988875 57888888765211 0 1122212 233 55888889999875 499999999
Q ss_pred HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc-
Q 018231 124 SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG- 202 (359)
Q Consensus 124 a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~- 202 (359)
++..++.++++|||+|+++++. |..+...+...|.++..++ .+ +++.+|++++++.+...++++|+++
T Consensus 115 ~i~~~~~~~~~~gd~Vlv~~P~--------y~~y~~~~~~~g~~~~~v~--~~-~~~~~d~~~l~~~~~~~~~~~v~l~~ 183 (380)
T PLN03026 115 LIDLLMRCVLDPGDKIIDCPPT--------FGMYVFDAAVNGAEVIKVP--RT-PDFSLDVPRIVEAVETHKPKLLFLTS 183 (380)
T ss_pred HHHHHHHHhcCCCCEEEEcCCC--------hHHHHHHHHHcCCEEEEee--cC-CCCCcCHHHHHHHHhccCCcEEEEeC
Confidence 7777888889999999999944 4333334455676665554 44 4578999999998833389999988
Q ss_pred CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccC----CCCCCCCCceEEEeCCCCcCC--CCCceEEEEeCCcc
Q 018231 203 ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAG----VIPSPFEYADVVTTTTHKSLR--GPRGAMIFFRKGVK 275 (359)
Q Consensus 203 ~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~----~~~~~~~~~D~v~~s~~K~l~--gp~gG~l~~~~~~~ 275 (359)
|+| ||...+.+++.++++.. +++|+|+++..-..... .... ...+++.|++|.++ |.+-|+++.++
T Consensus 184 P~NPTG~~~~~~~l~~l~~~~-~~vi~DeaY~~~~~~~~~~~~~~~~---~~viv~~SfSK~~glaGlRiGy~~~~~--- 256 (380)
T PLN03026 184 PNNPDGSIISDDDLLKILELP-ILVVLDEAYIEFSTQESRMKWVKKY---DNLIVLRTFSKRAGLAGLRVGYGAFPL--- 256 (380)
T ss_pred CCCCCCCCCCHHHHHHHHhcC-CEEEEECcchhhcCCcchHHHHHhC---CCEEEEecchHhhcCccccceeeecCH---
Confidence 888 99999999999999765 89999999742111000 0111 24688999999773 33339999876
Q ss_pred hhccCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHH
Q 018231 276 EINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVAL 316 (359)
Q Consensus 276 ~~~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al 316 (359)
++.+.+.....+ .+.+.+...++.++|
T Consensus 257 -----------~~i~~l~~~~~~---~~~~~~~q~aa~~aL 283 (380)
T PLN03026 257 -----------SIIEYLWRAKQP---YNVSVAAEVAACAAL 283 (380)
T ss_pred -----------HHHHHHHHhcCC---CCCCHHHHHHHHHHh
Confidence 445544433222 234455555555666
No 125
>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.
Probab=99.78 E-value=3.2e-19 Score=168.88 Aligned_cols=200 Identities=23% Similarity=0.279 Sum_probs=139.3
Q ss_pred HHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEeccc
Q 018231 97 CQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL 175 (359)
Q Consensus 97 ~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 175 (359)
+++.+++.||++. ..++++|+| ++.+++.++++|||+|++....|.|++. ++.+.|+.++.++..
T Consensus 71 Ae~~aA~~fGAd~-----t~flvnGsT~g~~a~i~a~~~~gd~VLv~RN~HkSv~~--------alil~ga~Pvyi~p~- 136 (417)
T PF01276_consen 71 AEELAARAFGADK-----TFFLVNGSTSGNQAMIMALCRPGDKVLVDRNCHKSVYN--------ALILSGAIPVYIPPE- 136 (417)
T ss_dssp HHHHHHHHHTESE-----EEEESSHHHHHHHHHHHHHTTTTCEEEEETT--HHHHH--------HHHHHTEEEEEEEEE-
T ss_pred HHHHHHHhcCCCe-----EEEEecCchHHHHHHHHHhcCCCCEEEEcCCcHHHHHH--------HHHHcCCeEEEecCC-
Confidence 5589999999986 588999999 9999999999999999999988877754 555778777766643
Q ss_pred CCCC---CCCCH-----HHHHHHhhhh-CCc---EEEEc-CCCCCChhhHHHHHHHHHHcCCEEEEeccccccccccCCC
Q 018231 176 NEST---GYIDY-----DQLEKSATLF-RPK---LIVAG-ASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVI 242 (359)
Q Consensus 176 ~~~~---~~~d~-----e~l~~~i~~~-~~k---~v~l~-~~n~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~ 242 (359)
+.+. +.+++ +.+++++++. ..| +++++ |+-+|...++++|+++|++++++|++|+||++-....++.
T Consensus 137 ~~~~gi~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~PTY~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~lp 216 (417)
T PF01276_consen 137 DNEYGIIGGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSPTYYGVCYDIKEIAEICHKHGIPLLVDEAHGAHFGFHPLP 216 (417)
T ss_dssp E-TTS-BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS-TTSEEE-HHHHHHHHCCTECEEEEE-TT-TTGGCSGGG
T ss_pred ccccCCccCCChhhhhHHHHHHHHHhCccccCceEEEEeCCCCCeEEECHHHHHHHhcccCCEEEEEccccccccCCCCc
Confidence 3222 24566 9999999862 223 37777 5558999999999999999999999999997543333333
Q ss_pred CCCCC-Cce-------EEEeCCCCcCCCCCc-eEEEEeCCcchhccCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHH
Q 018231 243 PSPFE-YAD-------VVTTTTHKSLRGPRG-AMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLA 313 (359)
Q Consensus 243 ~~~~~-~~D-------~v~~s~~K~l~gp~g-G~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~ 313 (359)
..... ++| +++.|.||.+++... ++|.+++... -..++++....-....+|+++.+++++
T Consensus 217 ~~a~~~gad~~~~~~~~vvqS~HKtL~altQts~lh~~~~~~-----------v~~~~~~~~l~~~~TTSPSY~lmASlD 285 (417)
T PF01276_consen 217 RSALALGADRPNDPGIIVVQSTHKTLPALTQTSMLHVKGDRI-----------VDHERVNEALSMHQTTSPSYPLMASLD 285 (417)
T ss_dssp TTCSSTTSS-CTSBEEEEEEEHHHHSSS-TT-EEEEEETCCC-----------TTHHHHHHHHHHHS-SS--HHHHHHHH
T ss_pred cchhhccCccccccceeeeechhhcccccccceEEEecCCCc-----------ccHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 33333 688 999999999988777 7888888510 012222222111123789999999999
Q ss_pred HHHHHHhc
Q 018231 314 VALKQVCT 321 (359)
Q Consensus 314 ~Al~~~~~ 321 (359)
.|.+++..
T Consensus 286 ~a~~~m~~ 293 (417)
T PF01276_consen 286 VARAQMEE 293 (417)
T ss_dssp HHHHHHSH
T ss_pred HHHHHHhh
Confidence 99999843
No 126
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=99.78 E-value=7.2e-19 Score=166.16 Aligned_cols=173 Identities=18% Similarity=0.148 Sum_probs=128.3
Q ss_pred CCchhHHHHHHHHHHHHHHHcCCC-CCCCceeEEECCChH-HHHHHHHhhcC------------CC--CeeeecCCCCCc
Q 018231 85 GGNEYIDMAESLCQKRALEAFRLD-PEKWGVNVQSLSGSP-SNFQVYTALLK------------PH--DRIMALDLPHGG 148 (359)
Q Consensus 85 ~~~~~~~~l~~~~~~~~a~~~g~~-~~~~~~~v~~tsG~~-a~~~~~~al~~------------~G--d~Vl~~~~~~~~ 148 (359)
.......++|+.+++++++++|++ .+. ++++|+|++ ++..++.++.. +| +.|++++..|.+
T Consensus 31 ~~~~~~~~le~~~~~~~~~~~g~~~~~~---~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~~ 107 (345)
T cd06450 31 DESPAATEMEAEVVNWLAKLFGLPSEDA---DGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVS 107 (345)
T ss_pred ccCchhHHHHHHHHHHHHHHhCCCCCCC---CEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCcchhH
Confidence 333557788999999999999996 332 488899888 88777777632 33 367777767765
Q ss_pred ccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhh-----CCcEEEEc-CCC-CCChhhHHHHHHHHHH
Q 018231 149 HLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF-----RPKLIVAG-ASA-YARLYDYERIRKVCNK 221 (359)
Q Consensus 149 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~-----~~k~v~l~-~~n-~g~~~~l~~i~~la~~ 221 (359)
+.. .+...|.+++.++ .+ +++.+|+++|++.+++. ++++++++ ++| +|...|+++|.++|++
T Consensus 108 ~~~--------~~~~~g~~~~~v~--~~-~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~ 176 (345)
T cd06450 108 VEK--------AAAYLDVKVRLVP--VD-EDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEIADLAEK 176 (345)
T ss_pred HHH--------HHHHHhcCeEEee--eC-CCCCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCCHHHHHHHHHH
Confidence 432 2233466665565 44 34689999999999752 57777776 666 8999999999999999
Q ss_pred cCCEEEEeccccccccccCCCC---CCCCCceEEEeCCCCcCCCCCc-eEEEEe
Q 018231 222 QKAIMLADMAHISGLVAAGVIP---SPFEYADVVTTTTHKSLRGPRG-AMIFFR 271 (359)
Q Consensus 222 ~~~~vivD~a~~~g~~~~~~~~---~~~~~~D~v~~s~~K~l~gp~g-G~l~~~ 271 (359)
+|+++++|++|+.+..+.+... ....++|++++|+||++++|.| |+++++
T Consensus 177 ~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p~g~g~~~~~ 230 (345)
T cd06450 177 YDLWLHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLGCSAVLVR 230 (345)
T ss_pred hCCeEEEechhhHHHhhChhhHHHhcCccccCEEEEchhHhhCCCcchHHHHHH
Confidence 9999999999998887653322 1123589999999999988887 777665
No 127
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=99.78 E-value=4e-18 Score=160.55 Aligned_cols=188 Identities=16% Similarity=0.181 Sum_probs=125.7
Q ss_pred CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHhhcCCC
Q 018231 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPH 136 (359)
Q Consensus 58 ~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~al~~~G 136 (359)
+++.+++++.+.... . . .|+......+ +++++++++| +. .+++++|++ ++..++.+++++|
T Consensus 10 ~~~~v~~a~~~~~~~-~--~-----~~~~~~~~~~----l~~~~a~~~g-~~-----~~~~~~~gt~a~~~~~~~l~~~g 71 (338)
T cd06502 10 PTPEMLEAMAAANVG-D--D-----VYGEDPTTAK----LEARAAELFG-KE-----AALFVPSGTAANQLALAAHTQPG 71 (338)
T ss_pred CCHHHHHHHHhcccC-C--c-----ccCCCHHHHH----HHHHHHHHhC-CC-----eEEEecCchHHHHHHHHHhcCCC
Confidence 688999999876532 1 1 1121233333 5588999999 32 255555555 8887889999999
Q ss_pred CeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhh------hCCcEEEEc-CCCCC--
Q 018231 137 DRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL------FRPKLIVAG-ASAYA-- 207 (359)
Q Consensus 137 d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~------~~~k~v~l~-~~n~g-- 207 (359)
|+|+++++.|.++..... .+.+.|.++..++ .+ .+.+|++++++++++ .++++|+++ ++|+|
T Consensus 72 d~v~~~~~~~~~~~~~~~-----~~~~~g~~~~~v~--~~--~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~g~~ 142 (338)
T cd06502 72 GSVICHETAHIYTDEAGA-----PEFLSGVKLLPVP--GE--NGKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEGGTV 142 (338)
T ss_pred CeEEEecCcceeeecCCc-----HHHHcCceEEeec--CC--CCcCCHHHHHHHhhccCCCcCCcceEEEEEeecCCccc
Confidence 999999877765432110 1223566665554 33 367999999999874 268899888 77766
Q ss_pred -ChhhHHHHHHHHHHcCCEEEEeccccccccc-cCCCCCCC-CCceEEEeCCCCcCCCCCceEEEEeC
Q 018231 208 -RLYDYERIRKVCNKQKAIMLADMAHISGLVA-AGVIPSPF-EYADVVTTTTHKSLRGPRGAMIFFRK 272 (359)
Q Consensus 208 -~~~~l~~i~~la~~~~~~vivD~a~~~g~~~-~~~~~~~~-~~~D~v~~s~~K~l~gp~gG~l~~~~ 272 (359)
...++++|.++|+++|+++|+|++|..+... .+...... .++|+++.|+||+++.|.|++++.++
T Consensus 143 ~~~~~l~~i~~~~~~~~~~livDea~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~g~~~~~~~ 210 (338)
T cd06502 143 YPLDELKAISALAKENGLPLHLDGARLANAAAALGVALKTYKSGVDSVSFCLSKGGGAPVGAVVVGNR 210 (338)
T ss_pred cCHHHHHHHHHHHHHcCCeEeechHHHHHHHHhcCCCHHHHHhcCCEEEEeccccCCCccceEEECCH
Confidence 3567888999999999999999998544321 11110111 24899999999999777656555555
No 128
>PRK04311 selenocysteine synthase; Provisional
Probab=99.78 E-value=1.1e-17 Score=162.50 Aligned_cols=233 Identities=12% Similarity=0.113 Sum_probs=146.5
Q ss_pred CCCCCCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhh
Q 018231 53 PSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL 132 (359)
Q Consensus 53 ~~~~~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al 132 (359)
.+-.+.++++.+++.+.+.+ |.. .......+..+ ..+ +.+++.+++++|++. .+++.||+.++.+++.+
T Consensus 93 lg~s~l~~~v~eav~~~~~~-~~~--le~~l~~g~~g-~r~-~~~e~~lA~l~Gae~-----a~vv~sgtaAl~l~l~~- 161 (464)
T PRK04311 93 LGRALLSEAAIEAVTEAARG-YSN--LEYDLATGKRG-SRD-RALAALLCALTGAED-----ALVVNNNAAAVLLALNA- 161 (464)
T ss_pred CCCCCCCHHHHHHHHHHHhc-ccc--cccchhhcccc-hHH-HHHHHHHHHHhCCCe-----EEEECCHHHHHHHHHHH-
Confidence 45567899999999998765 311 01000001011 111 236689999999874 37777777777756644
Q ss_pred cCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc-CCCC---C-
Q 018231 133 LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASAY---A- 207 (359)
Q Consensus 133 ~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n~---g- 207 (359)
+.+||+|++++.++.+..+. +.. ...+...|++++.+. .+ ...+++++++++++ +|++|++. ++|+ |
T Consensus 162 l~~GdeVIvs~~e~~~~ggs-~~i-~~~~~~~G~~l~~v~--~~---~~t~~~dle~aI~~-~TklV~~vh~sN~~i~G~ 233 (464)
T PRK04311 162 LAAGKEVIVSRGELVEIGGA-FRI-PDVMRQAGARLVEVG--TT---NRTHLRDYEQAINE-NTALLLKVHTSNYRIEGF 233 (464)
T ss_pred hCCCCEEEEcchhhhhcCcc-hhh-HHHHHHCCcEEEEEC--CC---CCCCHHHHHHhcCc-cCeEEEEEcCCCcccccc
Confidence 68999999988665532111 111 012234465555453 32 24579999999998 89998876 7773 4
Q ss_pred -ChhhHHHHHHHHHHcCCEEEEeccccccccc----cC--CCC---CCC-CCceEEEeCCCCcCCCCCceEEEEeCCcch
Q 018231 208 -RLYDYERIRKVCNKQKAIMLADMAHISGLVA----AG--VIP---SPF-EYADVVTTTTHKSLRGPRGAMIFFRKGVKE 276 (359)
Q Consensus 208 -~~~~l~~i~~la~~~~~~vivD~a~~~g~~~----~~--~~~---~~~-~~~D~v~~s~~K~l~gp~gG~l~~~~~~~~ 276 (359)
...|+++|+++|++||+++++|+++ |.+. .. ..+ .++ .|+|++++|+||+++||.+|++++++
T Consensus 234 ~~~~dl~eI~~lak~~gi~vivD~gs--G~l~~~~~~gl~~~p~~~~~l~~GaDiv~fSg~K~LgGp~~G~i~g~~---- 307 (464)
T PRK04311 234 TKEVSLAELAALGKEHGLPVVYDLGS--GSLVDLSQYGLPDEPTVQELLAAGVDLVTFSGDKLLGGPQAGIIVGKK---- 307 (464)
T ss_pred CCcCCHHHHHHHHHHcCCeEEEECCC--cccccchhccCCCCCchhhHHhcCCcEEEecCcccccCCceEEEEEcH----
Confidence 5679999999999999999999963 2221 00 011 111 26999999999999999889999987
Q ss_pred hccCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhc
Q 018231 277 INKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCT 321 (359)
Q Consensus 277 ~~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~ 321 (359)
++.+++..... .+.-..+-..++++.+++.....
T Consensus 308 ----------~li~~l~~~~~-~r~lr~dk~~l~~l~~~l~~~~~ 341 (464)
T PRK04311 308 ----------ELIARLKKHPL-KRALRVDKLTLAALEATLRLYLD 341 (464)
T ss_pred ----------HHHHHHhhchh-HHHHhcchHHHHHHHHHHHHHhC
Confidence 44444332110 11112234566777777775543
No 129
>PRK05387 histidinol-phosphate aminotransferase; Provisional
Probab=99.78 E-value=5e-18 Score=161.06 Aligned_cols=222 Identities=18% Similarity=0.174 Sum_probs=148.7
Q ss_pred cCceeeCCCCC--CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-
Q 018231 47 KGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP- 123 (359)
Q Consensus 47 ~~i~l~~~~~~--~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~- 123 (359)
+.|+|..++++ +++.+.+++.+.+.+.. ..| +... ..+ +++.++++++++++ +|++|+|++
T Consensus 25 ~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~-~~y------~~~~-~~~----lr~aia~~~~~~~~----~I~it~G~~~ 88 (353)
T PRK05387 25 KLIKLNTNENPYPPSPKVLEAIRAALGDDL-RLY------PDPN-ADA----LRQAIAAYYGLDPE----QVFVGNGSDE 88 (353)
T ss_pred ceeeccCCCCCCCCCHHHHHHHHHHhhhhh-hcC------CCCc-HHH----HHHHHHHHhCCCHH----HEEEcCCHHH
Confidence 46899888875 46889999987665422 122 2211 233 55888888898875 499999999
Q ss_pred HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc-
Q 018231 124 SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG- 202 (359)
Q Consensus 124 a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~- 202 (359)
++..++.++++|||+|+++++.| +.+...+...|.++..++ .+ +++.+|++++++ ++++++++
T Consensus 89 al~~~~~~l~~~gd~vlv~~P~y--------~~~~~~~~~~g~~~~~v~--~~-~~~~~d~~~l~~-----~~~~v~~~~ 152 (353)
T PRK05387 89 VLAHAFLAFFNHDRPLLFPDITY--------SFYPVYAGLYGIPYEEIP--LD-DDFSIDVEDYLR-----PNGGIIFPN 152 (353)
T ss_pred HHHHHHHHhcCCCCEEEEeCCCH--------HHHHHHHHHcCCEEEEee--cC-CCCCCCHHHHHh-----cCCEEEEeC
Confidence 88878999999999999999444 333333455676665565 44 457899998863 45777776
Q ss_pred CCC-CCChhhHHHHHHHHHHc-CCEEEEeccccccccccCCCCCCC---CCceEEEeCCCCcCC--CCCceEEEEeCCcc
Q 018231 203 ASA-YARLYDYERIRKVCNKQ-KAIMLADMAHISGLVAAGVIPSPF---EYADVVTTTTHKSLR--GPRGAMIFFRKGVK 275 (359)
Q Consensus 203 ~~n-~g~~~~l~~i~~la~~~-~~~vivD~a~~~g~~~~~~~~~~~---~~~D~v~~s~~K~l~--gp~gG~l~~~~~~~ 275 (359)
|+| ||...+.+++.++++.+ ++++|+|+++.. . ... ...++ ....+++.|++|.++ |.+-|+++.++
T Consensus 153 P~NPtG~~~~~~~~~~l~~~~~~~~livDe~y~~-~-~~~-~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~~--- 226 (353)
T PRK05387 153 PNAPTGIALPLAEIERILAANPDSVVVIDEAYVD-F-GGE-SAIPLIDRYPNLLVVQTFSKSRSLAGLRVGFAIGHP--- 226 (353)
T ss_pred CCCCCCCCCCHHHHHHHHHhCCCcEEEEeCcccc-c-CCc-chHHHHhhCCCEEEEEehhHhhcchhhhceeeecCH---
Confidence 888 99999999999998876 999999999742 1 100 00000 124699999999764 44449998866
Q ss_pred hhccCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHH
Q 018231 276 EINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALK 317 (359)
Q Consensus 276 ~~~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~ 317 (359)
++.+.+..........+.+.+...++..+++
T Consensus 227 -----------~~~~~l~~~~~~~~~~~~~~~~q~~~~~~l~ 257 (353)
T PRK05387 227 -----------ELIEALNRVKNSFNSYPLDRLAQAGAIAAIE 257 (353)
T ss_pred -----------HHHHHHHHhhccCCCCCcCHHHHHHHHHHhc
Confidence 4445443322111123455666666656553
No 130
>PRK08636 aspartate aminotransferase; Provisional
Probab=99.78 E-value=4.2e-17 Score=157.53 Aligned_cols=226 Identities=18% Similarity=0.167 Sum_probs=146.3
Q ss_pred cccChHHHHHHHHHHHH----hhcCceeeCCCC--CCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHH
Q 018231 28 EVVDPEIADIIEHEKAR----QWKGLELIPSEN--FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRA 101 (359)
Q Consensus 28 ~~~~~~~~~~~~~~~~~----~~~~i~l~~~~~--~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~ 101 (359)
..+.++.+..+.+.... ..+.++|..+.. ++++.+.+++.+.+.... ...|+...+...+++++++++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~p~~~~~~~~~~~~~~~~~~~~------~~~Y~~~~G~~~lR~~ia~~l 84 (403)
T PRK08636 11 KRLPKYVFAEVNELKMAARRAGEDIIDFSMGNPDGPTPQHIIDKLCESAQKPK------THGYSVSKGIYKLRLAICNWY 84 (403)
T ss_pred HhCCccHHHHHHHHHHHHHhcCCCEEEcCCcCCCCCCCHHHHHHHHHHhcCCc------cCCCCCCCCCHHHHHHHHHHH
Confidence 33445555544443221 235677875543 256667777766554311 122344456678888888999
Q ss_pred HHHcCC--CCCCCceeEEECCChH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCC
Q 018231 102 LEAFRL--DPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNES 178 (359)
Q Consensus 102 a~~~g~--~~~~~~~~v~~tsG~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~ 178 (359)
.+.+|. ++++ +|++|+|++ ++..++.++++|||.|++++|.|+ .+...+...|+++..++++.+ +
T Consensus 85 ~~~~~~~~~~~~---~I~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~--------~~~~~~~~~g~~~~~v~~~~~-~ 152 (403)
T PRK08636 85 KRKYNVDLDPET---EVVATMGSKEGYVHLVQAITNPGDVAIVPDPAYP--------IHSQAFILAGGNVHKMPLEYN-E 152 (403)
T ss_pred HHHhCCCCCCCC---eEEECCChHHHHHHHHHHhCCCCCEEEEcCCCCc--------chHHHHHhcCCEEEEEecccc-c
Confidence 888785 4431 499999999 888899999999999999995554 333345567777766654333 4
Q ss_pred CCCCCHHHH----HHHhhh--hCCcEEEEc-CCC-CCChhh---HHHHHHHHHHcCCEEEEeccccccccccCCCCCC--
Q 018231 179 TGYIDYDQL----EKSATL--FRPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP-- 245 (359)
Q Consensus 179 ~~~~d~e~l----~~~i~~--~~~k~v~l~-~~n-~g~~~~---l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~-- 245 (359)
++.+|++.+ ++.++. .++++++++ |+| ||...+ +++|.++|++|++++|+|++++.-... +....+
T Consensus 153 ~~~~d~~~l~~~l~~~~~~~~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~-~~~~~~~~ 231 (403)
T PRK08636 153 DFELDEDQFFENLEKALRESSPKPKYVVVNFPHNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFD-GYKTPSIL 231 (403)
T ss_pred cCccChhhhhhHHHHHHhhccCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccchhhccC-CCCCCChh
Confidence 578888754 555542 268888888 788 885554 678888999999999999997532221 100011
Q ss_pred -CC---CceEEEeCCCCcCC--CCCceEEEEeC
Q 018231 246 -FE---YADVVTTTTHKSLR--GPRGAMIFFRK 272 (359)
Q Consensus 246 -~~---~~D~v~~s~~K~l~--gp~gG~l~~~~ 272 (359)
+. ..-+.+.|++|.++ |.+.|+++.++
T Consensus 232 ~~~~~~~~~i~~~S~SK~~~~~GlRiG~iv~~~ 264 (403)
T PRK08636 232 EVEGAKDVAVESYTLSKSYNMAGWRVGFVVGNK 264 (403)
T ss_pred cCCCccccEEEEEecccccCCccceeeeeeCCH
Confidence 11 12355789999883 44449998866
No 131
>TIGR00474 selA seryl-tRNA(sec) selenium transferase. In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.
Probab=99.78 E-value=1.1e-17 Score=162.03 Aligned_cols=199 Identities=13% Similarity=0.111 Sum_probs=132.2
Q ss_pred CCCCCCcHHHHHHHHhhhhccCCC-CCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHh
Q 018231 53 PSENFTSVSVMQAVGSVMTNKYSE-GYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTA 131 (359)
Q Consensus 53 ~~~~~~~~~v~~al~~~~~~~~~~-g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~a 131 (359)
.+-.+.++.+++++.+++.+ |.. .+.......+ ...+ .+++.+++++|++. .+++.||++++.+++ +
T Consensus 88 lg~s~l~~~vieAv~~~~~~-y~~l~~~l~~g~~g-~r~~----~le~~lA~l~gae~-----alvv~sg~aAi~l~l-~ 155 (454)
T TIGR00474 88 LGRAPLAEEAIEAVTDAARG-YSNLEYDLETGKRG-SRYS----HVEGLLCELTGAED-----ALVVNNNAAAVLLAL-N 155 (454)
T ss_pred CCCCCCCHHHHHHHHHHHhc-ccchhccccccccc-hHHH----HHHHHHHHHhCCCc-----EEEECCHHHHHHHHH-H
Confidence 45557899999999998875 421 1110000011 1122 36689999999975 377777777777566 4
Q ss_pred hcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc-CCCC---C
Q 018231 132 LLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASAY---A 207 (359)
Q Consensus 132 l~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n~---g 207 (359)
.+.+||+|++++.+|..+-+ .+.+ ...+...|++++.+. .+ ...|++++++++++ +|++|++. ++|+ |
T Consensus 156 ~l~~GdeVIvs~~e~v~~gg-s~~i-~~~~~~~G~~~~~v~--~~---~~~~l~dle~aI~~-~T~lv~~~h~sN~~~~G 227 (454)
T TIGR00474 156 TLAKGKEVIVSRGELVEIGG-SFRI-PDVMEQSGAKLVEVG--TT---NRTHLKDYEDAITE-NTALLLKVHTSNYRIVG 227 (454)
T ss_pred HhCCcCEEEECCChhhhhcc-hhhH-HHHHHHcCCEEEEeC--CC---CCCCHHHHHHhcCc-CCEEEEEEccCcccccC
Confidence 57999999999876532211 1111 112334566565443 32 23589999999988 89998876 7773 4
Q ss_pred --ChhhHHHHHHHHHHcCCEEEEecccccccc-c---cCCCCC-----CC-CCceEEEeCCCCcCCCCCceEEEEeCC
Q 018231 208 --RLYDYERIRKVCNKQKAIMLADMAHISGLV-A---AGVIPS-----PF-EYADVVTTTTHKSLRGPRGAMIFFRKG 273 (359)
Q Consensus 208 --~~~~l~~i~~la~~~~~~vivD~a~~~g~~-~---~~~~~~-----~~-~~~D~v~~s~~K~l~gp~gG~l~~~~~ 273 (359)
...|+++|+++|++||+++++|.+ .|.+ + .++... +. .|+|++++|+||+|+||.+|+++++++
T Consensus 228 ~~~~~dl~~I~~la~~~g~~vivD~~--sG~l~~~~~~gl~~~p~~~~~~~~GaDiv~fSg~K~LgGp~~G~i~g~~~ 303 (454)
T TIGR00474 228 FTEEVSIAELVALGREHGLPVMEDLG--SGSLVDLSRYGLPDEPTVQEVIAAGVDLVTFSGDKLLGGPQAGIIVGKKE 303 (454)
T ss_pred CCCCCCHHHHHHHHHHcCCeEEEECC--CcccccchhccCCCCcccccHhHcCCCEEEecCccccCCCeEEEEEECHH
Confidence 478999999999999999999975 3433 1 111111 11 269999999999999998899999873
No 132
>PRK09148 aminotransferase; Validated
Probab=99.78 E-value=4.5e-17 Score=157.40 Aligned_cols=227 Identities=15% Similarity=0.168 Sum_probs=144.4
Q ss_pred ccccChHHHHHHHHHHHH----hhcCceeeCCCCC--CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHH
Q 018231 27 LEVVDPEIADIIEHEKAR----QWKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKR 100 (359)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~----~~~~i~l~~~~~~--~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~ 100 (359)
++.+.++++..+.+.... ....|+|..+++. +++.+++++.+.+......+ |+...+..++++++.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~------Y~~~~G~~~lr~aia~~ 80 (405)
T PRK09148 7 IRRLPPYVFEQVNRLKAAARAAGADIIDLGMGNPDLPTPQHIVDKLCETAQDPRTHR------YSASKGIPGLRRAQAAY 80 (405)
T ss_pred hhcCCccHHHHHHHHHHHHHhcCCCeEEcCCCCCCCCCCHHHHHHHHHHHcCcccCC------CCCCCCCHHHHHHHHHH
Confidence 344556666655443321 1355888876653 46888888877654311112 33334567788778888
Q ss_pred HHHHcCC--CCCCCceeEEECCChH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCC
Q 018231 101 ALEAFRL--DPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNE 177 (359)
Q Consensus 101 ~a~~~g~--~~~~~~~~v~~tsG~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~ 177 (359)
+.+.+|. ++++ +|++|+|++ ++..++.+++++||+|++++++|+.+ ...+...|.++..++...+
T Consensus 81 ~~~~~g~~~~~~~---~I~it~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~--------~~~~~~~g~~v~~v~~~~~- 148 (405)
T PRK09148 81 YARRFGVKLNPDT---QVVATLGSKEGFANMAQAITAPGDVILCPNPSYPIH--------AFGFIMAGGVIRSVPAEPD- 148 (405)
T ss_pred HHHHhCCCCCCCC---cEEEcCChHHHHHHHHHHhcCCCCEEEEcCCCCccc--------HHHHHhcCCEEEEEeCCCC-
Confidence 8777675 4431 499999999 88878899999999999999665544 2233445766655654222
Q ss_pred CCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhh---HHHHHHHHHHcCCEEEEeccccccccccC----CCCCC-CC
Q 018231 178 STGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAG----VIPSP-FE 247 (359)
Q Consensus 178 ~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~---l~~i~~la~~~~~~vivD~a~~~g~~~~~----~~~~~-~~ 247 (359)
..+..++++..+...+ ++++++++ |+| ||...+ +++|.++|++||+++|+|+++..-..... ....+ ..
T Consensus 149 ~~~~~~l~~~~~~~~~-~~~~v~l~~P~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~ 227 (405)
T PRK09148 149 EEFFPALERAVRHSIP-KPIALIVNYPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAK 227 (405)
T ss_pred CCCccCHHHHHhhccc-cceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCCcc
Confidence 2334455544433334 78888888 888 896665 46788899999999999999753222110 11111 01
Q ss_pred CceEEEeCCCCcCC--CCCceEEEEeC
Q 018231 248 YADVVTTTTHKSLR--GPRGAMIFFRK 272 (359)
Q Consensus 248 ~~D~v~~s~~K~l~--gp~gG~l~~~~ 272 (359)
+..+++.|++|.++ |.+-|+++.++
T Consensus 228 ~~~i~~~SfSK~~~~pGlR~G~~v~~~ 254 (405)
T PRK09148 228 DVTVEFTSMSKTFSMAGWRMGFAVGNE 254 (405)
T ss_pred CcEEEEeccccccCCcchheeeeeCCH
Confidence 23467899999874 33349998866
No 133
>TIGR01141 hisC histidinol-phosphate aminotransferase. Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.
Probab=99.78 E-value=4.2e-18 Score=161.16 Aligned_cols=195 Identities=17% Similarity=0.175 Sum_probs=137.4
Q ss_pred cCceeeCCCCC--CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-
Q 018231 47 KGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP- 123 (359)
Q Consensus 47 ~~i~l~~~~~~--~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~- 123 (359)
+.|+|..++++ +|+.+++++.++..... .|+ .... .+ +++.++++++++++ +|++|+|++
T Consensus 20 ~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~--~y~------~~~~-~~----lr~~ia~~~~~~~~----~i~~~~G~~~ 82 (346)
T TIGR01141 20 EVIKLNSNENPFGPPPKAKEALRAEADKLH--RYP------DPDP-AE----LKQALADYYGVDPE----QILLGNGSDE 82 (346)
T ss_pred ceEEccCCCCCCCCCHHHHHHHHHhHHHhh--cCC------CCCH-HH----HHHHHHHHhCcChH----HEEEcCCHHH
Confidence 46888876654 68899999998764311 222 2122 33 55888889998765 499999999
Q ss_pred HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc-
Q 018231 124 SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG- 202 (359)
Q Consensus 124 a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~- 202 (359)
++..++.+++++||+|+++++.|+ .+...+...|.++..++ .+ +++.+|++++++.+.+ ++++|+++
T Consensus 83 ~l~~~~~~l~~~gd~v~~~~p~y~--------~~~~~~~~~g~~~~~~~--~~-~~~~~d~~~l~~~~~~-~~~~v~l~~ 150 (346)
T TIGR01141 83 IIELLIRAFLEPGDAVLVPPPTYS--------MYEISAKIHGAEVVKVP--LD-EDGQLDLEDILVAIDD-KPKLVFLCS 150 (346)
T ss_pred HHHHHHHHhcCCCCEEEEcCCCHH--------HHHHHHHHcCCeEEEec--cC-CCCCCCHHHHHHhcCC-CCCEEEEeC
Confidence 776688888999999999985543 22223445576665554 45 3478999999998876 89999988
Q ss_pred CCC-CCChhhHHHHHHHHHHc--CCEEEEeccccccccccCCCCCCC---CCceEEEeCCCCcCCCC--CceEEEEeC
Q 018231 203 ASA-YARLYDYERIRKVCNKQ--KAIMLADMAHISGLVAAGVIPSPF---EYADVVTTTTHKSLRGP--RGAMIFFRK 272 (359)
Q Consensus 203 ~~n-~g~~~~l~~i~~la~~~--~~~vivD~a~~~g~~~~~~~~~~~---~~~D~v~~s~~K~l~gp--~gG~l~~~~ 272 (359)
++| +|...+++++.++|+.+ ++++|+|++|+. ..... ..... ...++++.|.+|+++.+ +.|++++++
T Consensus 151 p~NptG~~~~~~~~~~l~~~~~~~~~ii~D~~y~~-~~~~~-~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~ 226 (346)
T TIGR01141 151 PNNPTGNLLSRSDIEAVLERTPEDALVVVDEAYGE-FSGEP-STLPLLAEYPNLIVLRTLSKAFGLAGLRIGYAIANA 226 (346)
T ss_pred CCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhh-hcCCc-cHHHHHhhCCCEEEEehhhHhhhchhhhceeeecCH
Confidence 888 99999999999998877 999999999862 21110 00000 01357788999998433 339998876
No 134
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=99.78 E-value=2e-17 Score=163.00 Aligned_cols=214 Identities=12% Similarity=0.093 Sum_probs=142.3
Q ss_pred cCceeeCCCCCCc-HHHHHHHHhhhh----cc-CCCCCCCCcccCCchhHHHHHHHHHHHHHHHcC----CCCCCCceeE
Q 018231 47 KGLELIPSENFTS-VSVMQAVGSVMT----NK-YSEGYPGARYYGGNEYIDMAESLCQKRALEAFR----LDPEKWGVNV 116 (359)
Q Consensus 47 ~~i~l~~~~~~~~-~~v~~al~~~~~----~~-~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g----~~~~~~~~~v 116 (359)
..|+|..+||++. +.+.+.+.+... .. -...++....|+...+..++++++.+++.+.+| ++++ +|
T Consensus 47 g~i~l~~aEN~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~aiA~~l~~~~g~~v~v~pe----~I 122 (496)
T PLN02376 47 GIIQMGLAENQLCLDLIKDWVKENPEASICTLEGIHQFSDIANFQDYHGLKKFRQAIAHFMGKARGGKVTFDPE----RV 122 (496)
T ss_pred ceEEeecchhhhhHHHHHHHHHhCchhhccccccccccchhhccCCCCCcHHHHHHHHHHHHHHhCCCCcCChh----hE
Confidence 4599999999863 233444443221 10 001133334566667788899888899988877 5665 49
Q ss_pred EECCChH-HHHHHHHhhcCCCCeeeecCCCCCcccCcccccccccee-eeeeeeEEEecccCCCCCCCCHHHHHHHhhh-
Q 018231 117 QSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKIS-AVSIFFETMPYRLNESTGYIDYDQLEKSATL- 193 (359)
Q Consensus 117 ~~tsG~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~- 193 (359)
++|+|++ ++..++.++++|||.|++++|.|+++ ...+. ..|+++..+++..+ +++.+|++++++++..
T Consensus 123 vit~Ga~~al~~l~~~l~~pGD~Vlv~~P~Y~~~--------~~~~~~~~G~~vv~v~~~~~-~~~~~~~~~le~a~~~a 193 (496)
T PLN02376 123 VMSGGATGANETIMFCLADPGDVFLIPSPYYAAF--------DRDLRWRTGVEIIPVPCSSS-DNFKLTVDAADWAYKKA 193 (496)
T ss_pred EEccchHHHHHHHHHHhCCCCCEEEECCCCccch--------HHHHHhhCCCEEEEEeCCCC-ccCcCCHHHHHHHHHHH
Confidence 9999999 88889999999999999999555544 32233 35766655654322 4578999999865421
Q ss_pred ----hCCcEEEEc-CCC-CCChhh---HHHHHHHHHHcCCEEEEeccccccccccCCCC----C----CCCC--ce--EE
Q 018231 194 ----FRPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIP----S----PFEY--AD--VV 252 (359)
Q Consensus 194 ----~~~k~v~l~-~~n-~g~~~~---l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~----~----~~~~--~D--~v 252 (359)
.++|+|+++ |+| ||...+ +++|.++|++||++||+|++++.-.+...... . +..+ .+ ++
T Consensus 194 ~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~v 273 (496)
T PLN02376 194 QESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHI 273 (496)
T ss_pred HhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCcccHHHhhccccccccCCCeEEE
Confidence 268888888 888 996665 66788899999999999999864332210000 0 0000 12 45
Q ss_pred EeCCCCcCC--CCCceEEEEeCC
Q 018231 253 TTTTHKSLR--GPRGAMIFFRKG 273 (359)
Q Consensus 253 ~~s~~K~l~--gp~gG~l~~~~~ 273 (359)
+.|++|.|+ |.+-|++++.++
T Consensus 274 v~S~SK~~glpGlRvG~li~~~~ 296 (496)
T PLN02376 274 VYSLSKDMGLPGFRVGIVYSFND 296 (496)
T ss_pred EEeccccCCCCcceEEEEEECCH
Confidence 789999874 444499998653
No 135
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=99.78 E-value=1.3e-17 Score=161.34 Aligned_cols=206 Identities=12% Similarity=0.041 Sum_probs=142.4
Q ss_pred hcCceeeCCCC------CCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCC--CCCCCceeEE
Q 018231 46 WKGLELIPSEN------FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRL--DPEKWGVNVQ 117 (359)
Q Consensus 46 ~~~i~l~~~~~------~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~--~~~~~~~~v~ 117 (359)
++.|+|..|+. ++|+.+++++.+.+.+....+ |+...+..++++++.+++.+.+|. +++ +|+
T Consensus 32 ~~~i~l~~G~p~~~~~~~~p~~~~~a~~~~~~~~~~~~------Y~~~~G~~~lr~aia~~~~~~~g~~~~~~----~I~ 101 (409)
T PLN00143 32 RLAISFGFGDPSCFECFRTTNIAEDAIVEAVRSAKFNS------YAPTGGILPARRAIADYLSNDLPYQLSPD----DVY 101 (409)
T ss_pred CceeeCCCCCCCCCCCCCCCHHHHHHHHHHHhCcCCCC------CCCCCCCHHHHHHHHHHHHhhcCCCCCHh----hEE
Confidence 35688876554 578889999988776521112 333345567777777888776654 554 599
Q ss_pred ECCChH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCC
Q 018231 118 SLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRP 196 (359)
Q Consensus 118 ~tsG~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~ 196 (359)
+|+|++ ++..++.++++|||.|+++++.|+. +...+...|.++..+++. +.+++.+|+++|++++++ ++
T Consensus 102 it~G~~~al~~~~~~l~~~gd~v~v~~P~y~~--------~~~~~~~~g~~~~~~~~~-~~~~~~~d~~~l~~~~~~-~~ 171 (409)
T PLN00143 102 LTLGCKHAAEIIIKVLARPEANILLPRPGFPD--------VETYAIFHHLEIRHFDLL-PEKGWEVDLDAVEAIADE-NT 171 (409)
T ss_pred EecChHHHHHHHHHHHcCCCCEEEEcCCCCcC--------HHHHHHHcCCEEEEEecc-CCCCCcCCHHHHHHhccc-CC
Confidence 999999 8887999999999999999955543 333445567666555532 224578999999998876 78
Q ss_pred cEEEEc-CCC-CCChhh---HHHHHHHHHHcCCEEEEeccccccccccCCCCCCC---C--CceEEEeCCCCcCC--CCC
Q 018231 197 KLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPF---E--YADVVTTTTHKSLR--GPR 264 (359)
Q Consensus 197 k~v~l~-~~n-~g~~~~---l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~---~--~~D~v~~s~~K~l~--gp~ 264 (359)
++++++ |+| ||...+ +++|.++|++|++++|+|+++..-... +....++ . ..-+++.|++|.|+ |.+
T Consensus 172 ~~~~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~-~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGlR 250 (409)
T PLN00143 172 IAMVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFG-SKPFVPMGLFASIVPVITLGSISKRWMIPGWG 250 (409)
T ss_pred EEEEEECCCCCCCCccCHHHHHHHHHHHHHcCCeEEEEccccccccC-CCCCcchhhhcccCcEEEEccchhhcCCCccc
Confidence 887776 888 996665 678888899999999999997532221 1111111 1 12378899999864 344
Q ss_pred ceEEEEeC
Q 018231 265 GAMIFFRK 272 (359)
Q Consensus 265 gG~l~~~~ 272 (359)
-|++++.+
T Consensus 251 vG~~v~~~ 258 (409)
T PLN00143 251 LGWLVTCD 258 (409)
T ss_pred eEEEEeeC
Confidence 49999853
No 136
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=99.78 E-value=3.7e-18 Score=164.16 Aligned_cols=155 Identities=19% Similarity=0.213 Sum_probs=118.8
Q ss_pred HHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccC
Q 018231 97 CQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLN 176 (359)
Q Consensus 97 ~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 176 (359)
+++.++++.|.+. .+++.||+.++..++.+++++||+|+++...|++. +..+...+...|++++.++ .
T Consensus 75 le~~lA~l~g~~~-----al~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~~~~t----~~~~~~~~~~~G~~v~~vd--~- 142 (403)
T PRK07810 75 FEERLRLIEGAEA-----CFATASGMSAVFTALGALLGAGDRLVAARSLFGSC----FVVCNEILPRWGVETVFVD--G- 142 (403)
T ss_pred HHHHHHHHhCCCc-----EEEECChHHHHHHHHHHHhCCCCEEEEccCCcchH----HHHHHHHHHHcCcEEEEEC--C-
Confidence 3388999999764 48888888888778888999999999987666543 3222222334465554442 2
Q ss_pred CCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEe
Q 018231 177 ESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTT 254 (359)
Q Consensus 177 ~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~ 254 (359)
.|++++++++++ +|++|+++ ++| +|.+.|+++|.++|+++|+++|+|++|+.+...... .. ++|++++
T Consensus 143 -----~d~~~l~~ai~~-~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a~a~~~~~~~~-~~---gaDivv~ 212 (403)
T PRK07810 143 -----EDLSQWEEALSV-PTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFATPLLQRGL-PL---GADVVVY 212 (403)
T ss_pred -----CCHHHHHHhcCc-CceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCCccccCChh-hc---CCcEEEc
Confidence 289999999988 89999987 888 899999999999999999999999999877653322 22 4899999
Q ss_pred CCCCcCCCCC---ceEEEEeCC
Q 018231 255 TTHKSLRGPR---GAMIFFRKG 273 (359)
Q Consensus 255 s~~K~l~gp~---gG~l~~~~~ 273 (359)
|++|+++|.. ||+++++++
T Consensus 213 S~tK~l~g~g~~~gG~v~~~~~ 234 (403)
T PRK07810 213 SGTKHIDGQGRVLGGAILGDRE 234 (403)
T ss_pred cCCceecCCcCceeEEEEeChH
Confidence 9999997754 588887763
No 137
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=99.78 E-value=1.9e-17 Score=156.97 Aligned_cols=198 Identities=14% Similarity=0.120 Sum_probs=139.0
Q ss_pred CceeeCCCCC--CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-H
Q 018231 48 GLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-S 124 (359)
Q Consensus 48 ~i~l~~~~~~--~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a 124 (359)
.++|..++++ +|+.+++++.+.+......+| +... ..+ +++.++++++++++ +|++|+|++ +
T Consensus 24 ~~~l~~~~~~~~~p~~~~~a~~~~~~~~~~~~y------~~~~-~~~----lr~~ia~~~~~~~~----~i~it~G~~~~ 88 (351)
T PRK14807 24 KYKMDANETPFELPEEVIKNIQEIVKSSQVNIY------PDPT-AEK----LREELARYCSVVPT----NIFVGNGSDEI 88 (351)
T ss_pred eeEccCCCCCCCCCHHHHHHHHHHhhcCcccCC------CCcc-HHH----HHHHHHHHhCCCcc----cEEEecCHHHH
Confidence 4778777774 689999998887653211122 2212 233 55788888898775 499999999 7
Q ss_pred HHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc-C
Q 018231 125 NFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-A 203 (359)
Q Consensus 125 ~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~-~ 203 (359)
+..++.++++|||+|+++++.|. .+...+...|.++..++ .+ +++.+|++++++.+++.++|+++++ +
T Consensus 89 l~~~~~~l~~~gd~Vlv~~p~y~--------~~~~~~~~~g~~~~~v~--~~-~~~~~d~~~l~~~~~~~~~k~v~l~~p 157 (351)
T PRK14807 89 IHLIMLAFINKGDVVIYPHPSFA--------MYSVYSKIAGAVEIPVK--LK-EDYTYDVGSFIKVIEKYQPKLVFLCNP 157 (351)
T ss_pred HHHHHHHhcCCCCEEEEeCCChH--------HHHHHHHHcCCeEEEee--cC-CCCCCCHHHHHHHhhccCCCEEEEeCC
Confidence 77788889999999999985544 22223445676665554 44 4578999999999975589999988 8
Q ss_pred CC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCC-CCCCCceEEEeCCCCcCC--CCCceEEEEeC
Q 018231 204 SA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIP-SPFEYADVVTTTTHKSLR--GPRGAMIFFRK 272 (359)
Q Consensus 204 ~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~-~~~~~~D~v~~s~~K~l~--gp~gG~l~~~~ 272 (359)
+| ||...+.+++.++|++++.++|+|+++.. ........ .......+++.|.+|.++ |.+-|+++.++
T Consensus 158 ~NPtG~~~~~~~l~~l~~~~~~~~ivDe~y~~-~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRiG~~v~~~ 229 (351)
T PRK14807 158 NNPTGSVIEREDIIKIIEKSRGIVVVDEAYFE-FYGNTIVDVINEFENLIVLRTLSKAFGLAGLRVGYAVANE 229 (351)
T ss_pred CCCCCCCCCHHHHHHHHHhCCCEEEEeCcchh-hcccchHHHhhhCCCEEEEecchHhcccchhceeeeecCH
Confidence 88 99999999999999998889999999842 21110000 000024588999999873 33339999866
No 138
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=99.78 E-value=5.5e-17 Score=156.69 Aligned_cols=206 Identities=16% Similarity=0.066 Sum_probs=136.9
Q ss_pred hcCceeeCCCC------CCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCC--CCCCCceeEE
Q 018231 46 WKGLELIPSEN------FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRL--DPEKWGVNVQ 117 (359)
Q Consensus 46 ~~~i~l~~~~~------~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~--~~~~~~~~v~ 117 (359)
.+.++|..++. ++++.+.+++.+.+......+ |+...+..++++++++++....+. +++ +|+
T Consensus 31 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~l~~~~~~~------Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~----~ii 100 (403)
T TIGR01265 31 KPIIPLSHGDPSVFGNLRTDPEAEEAVKDALRSGKFNG------YAPSVGALAAREAVAEYLSSDLPGKLTAD----DVV 100 (403)
T ss_pred CCeEEeCCCCCCccCCCCCCHHHHHHHHHHHhcCCCCC------CCCCCCCHHHHHHHHHHHHhhcCCCCCHH----HEE
Confidence 35788876643 568899999988776432112 222344555555455555443333 333 599
Q ss_pred ECCChH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCC
Q 018231 118 SLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRP 196 (359)
Q Consensus 118 ~tsG~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~ 196 (359)
+|+|++ ++..++.+++++||+|++++++|... ...+...|.++..+++..+ +++.+|++++++.+++ ++
T Consensus 101 ~t~G~t~al~~~~~~l~~~gd~Vlv~~p~y~~~--------~~~~~~~g~~~~~~~~~~~-~~~~~d~~~l~~~~~~-~~ 170 (403)
T TIGR01265 101 LTSGCSQAIEICIEALANPGANILVPRPGFPLY--------DTRAAFSGLEVRLYDLLPE-KDWEIDLDGLEALADE-KT 170 (403)
T ss_pred EecChHHHHHHHHHHhCCCCCEEEEeCCCchhH--------HHHHHHcCCEEEEecCCcc-cCCccCHHHHHHHhCc-Cc
Confidence 999999 88878899999999999999655432 2233445665655543222 4578999999998877 78
Q ss_pred cEEEEc-CCC-CCChh---hHHHHHHHHHHcCCEEEEeccccccccccCCCCCCC---C-C-ceEEEeCCCCcCCCC--C
Q 018231 197 KLIVAG-ASA-YARLY---DYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPF---E-Y-ADVVTTTTHKSLRGP--R 264 (359)
Q Consensus 197 k~v~l~-~~n-~g~~~---~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~---~-~-~D~v~~s~~K~l~gp--~ 264 (359)
++++++ |+| +|... ++++|.++|+++|+++|+|++++.-..... ...++ . . --+++.|++|.|+.| +
T Consensus 171 ~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~~vi~~~S~SK~~~~pGlR 249 (403)
T TIGR01265 171 VAIVVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDA-PFIPMASFASIVPVLSLGGISKRWVVPGWR 249 (403)
T ss_pred cEEEEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCC-CccchhhhccCCcEEEEeecccccCCCcce
Confidence 888887 888 88665 488999999999999999999753222110 00111 1 1 137888999986444 3
Q ss_pred ceEEEEeC
Q 018231 265 GAMIFFRK 272 (359)
Q Consensus 265 gG~l~~~~ 272 (359)
-|++++.+
T Consensus 250 iG~~v~~~ 257 (403)
T TIGR01265 250 LGWIIIHD 257 (403)
T ss_pred EEEEEEeC
Confidence 39999854
No 139
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=99.77 E-value=6.8e-18 Score=142.30 Aligned_cols=162 Identities=22% Similarity=0.263 Sum_probs=116.3
Q ss_pred HHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEeccc
Q 018231 97 CQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL 175 (359)
Q Consensus 97 ~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 175 (359)
+++.++++++.+.+ .+.+++|++ ++..++.++.++|++|+++++.|+++.. . .+...|.++..++ .
T Consensus 5 ~~~~l~~~~~~~~~----~~~~~~~~t~a~~~~~~~~~~~~~~v~~~~~~~~~~~~--~-----~~~~~g~~~~~v~--~ 71 (170)
T cd01494 5 LEEKLARLLQPGND----KAVFVPSGTGANEAALLALLGPGDEVIVDANGHGSRYW--V-----AAELAGAKPVPVP--V 71 (170)
T ss_pred HHHHHHHHcCCCCC----cEEEeCCcHHHHHHHHHHhCCCCCEEEEeecccceehh--h-----HHHhcCCEEEEec--c
Confidence 56889999965443 377777777 8888889988899999999988887752 1 2334566665554 3
Q ss_pred CCC-CCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEE
Q 018231 176 NES-TGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVV 252 (359)
Q Consensus 176 ~~~-~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v 252 (359)
+.. ....|.+++++.....++++++++ ++| +|...|+++|.++|+++|+++|+|++|..+............++|++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~d~~ 151 (170)
T cd01494 72 DDAGYGGLDVAILEELKAKPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPAPGVLIPEGGADVV 151 (170)
T ss_pred CCCCccchhhhhhhhccccCceEEEEEecCcCCCCeEcCHHHHHHHHHHcCCEEEEecccccccccccccccccccCCEE
Confidence 322 223333355554433478888887 444 67778899999999999999999999988777652211122359999
Q ss_pred EeCCCCcCCCCCceEEEEe
Q 018231 253 TTTTHKSLRGPRGAMIFFR 271 (359)
Q Consensus 253 ~~s~~K~l~gp~gG~l~~~ 271 (359)
+.|+||+|+++++|++++|
T Consensus 152 ~~s~~K~~~~~~~G~l~~~ 170 (170)
T cd01494 152 TFSLHKNLGGEGGGVVIVK 170 (170)
T ss_pred EEEcccccCCCceEEEEeC
Confidence 9999999988666999875
No 140
>PLN02721 threonine aldolase
Probab=99.77 E-value=6.4e-18 Score=160.15 Aligned_cols=200 Identities=17% Similarity=0.137 Sum_probs=131.0
Q ss_pred CceeeCCCCC-CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChHHHH
Q 018231 48 GLELIPSENF-TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNF 126 (359)
Q Consensus 48 ~i~l~~~~~~-~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~ 126 (359)
.++|.+++++ +++.+.+++...... . ...+| + ....+ +++.+++++|.+. .+++++|+.++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~a~~~~~~~-~-----~~~~~-~-~~~~~----l~~~la~~~~~~~-----~~~~~~Gs~a~~ 69 (353)
T PLN02721 7 VVDLRSDTVTKPTDAMRAAMANAEVD-D-----DVLGY-D-PTALR----LEEEMAKIFGKEA-----ALFVPSGTMGNL 69 (353)
T ss_pred hhhhhcccccCCCHHHHHHHHhccCC-C-----cccCC-C-HHHHH----HHHHHHHHhCCce-----eEEecCccHHHH
Confidence 4677766664 577888887653111 0 01112 1 22344 4588899999864 367777777666
Q ss_pred HHHHhhcC-CCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhh------hCCcEE
Q 018231 127 QVYTALLK-PHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL------FRPKLI 199 (359)
Q Consensus 127 ~~~~al~~-~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~------~~~k~v 199 (359)
.++.++++ +||+|++++++|.+.+.... .+...|.++..++ .+ +++.+|++++++.+++ .++++|
T Consensus 70 ~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~-----~~~~~g~~~~~v~--~~-~~~~~d~~~l~~~i~~~~~~~~~~~~~v 141 (353)
T PLN02721 70 ISVLVHCDVRGSEVILGDNSHIHLYENGG-----ISTLGGVHPRTVK--NN-EDGTMDLDAIEAAIRPKGDDHFPTTRLI 141 (353)
T ss_pred HHHHHHccCCCCeEEEcCccceehhcccc-----hhhhcCceeEecC--CC-cCCCcCHHHHHHHHHhccCCCCCcceEE
Confidence 67777777 99999999976643322100 1234565565554 44 5578999999999973 178999
Q ss_pred EEc-C-CC-CCChhh---HHHHHHHHHHcCCEEEEeccccccccc-cCCCCCCC-CCceEEEeCCCCcCCCCCceEEEEe
Q 018231 200 VAG-A-SA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVA-AGVIPSPF-EYADVVTTTTHKSLRGPRGAMIFFR 271 (359)
Q Consensus 200 ~l~-~-~n-~g~~~~---l~~i~~la~~~~~~vivD~a~~~g~~~-~~~~~~~~-~~~D~v~~s~~K~l~gp~gG~l~~~ 271 (359)
+++ + +| +|...+ +++|.++|+++|+++|+|++|..+... .+.....+ .++|.++.++||+|++|.|++++.+
T Consensus 142 ~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~~G~~~~~~ 221 (353)
T PLN02721 142 CLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVALGVPVHRLVKAADSVSVCLSKGLGAPVGSVIVGS 221 (353)
T ss_pred EEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhcchhhhCCCHHHHhhhCCEEEEecccccCCceeeEEecC
Confidence 986 3 44 565544 789999999999999999998765421 11111111 1589999999999988766656655
Q ss_pred C
Q 018231 272 K 272 (359)
Q Consensus 272 ~ 272 (359)
+
T Consensus 222 ~ 222 (353)
T PLN02721 222 K 222 (353)
T ss_pred H
Confidence 5
No 141
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=99.77 E-value=1.9e-17 Score=158.42 Aligned_cols=184 Identities=13% Similarity=0.124 Sum_probs=130.4
Q ss_pred CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHhh-cCC
Q 018231 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTAL-LKP 135 (359)
Q Consensus 58 ~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~al-~~~ 135 (359)
..++..+++.+.+.+.+ .++..+..++ +.+++++++|++. +++++|++ ++.+++.++ ++|
T Consensus 9 ~~~~~~~~~~~~l~~~~--------~~g~~~~~~~----~e~~la~~~g~~~------~v~~~sgt~al~~~l~~~~~~~ 70 (375)
T PRK11706 9 VVGTELDYIQQAMSSGK--------LCGDGGFTRR----CQQWLEQRFGSAK------VLLTPSCTAALEMAALLLDIQP 70 (375)
T ss_pred CCHHHHHHHHHHHHcCC--------ccCCCHHHHH----HHHHHHHHhCCCe------EEEECCHHHHHHHHHHHhCCCC
Confidence 34555677777776532 1121133343 4477888888863 77777777 776566665 799
Q ss_pred CCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCCCCChhhHHHH
Q 018231 136 HDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERI 215 (359)
Q Consensus 136 Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~~~n~g~~~~l~~i 215 (359)
||+|+++.++|.+... .+...|++++.+ +++++++.+|++++++.+++ ++|+|+++ +.+|...++++|
T Consensus 71 Gd~Viv~~~t~~~~~~--------~~~~~G~~~v~~--d~d~~~~~~d~~~le~~i~~-~tk~i~~~-~~~G~~~~~~~i 138 (375)
T PRK11706 71 GDEVIMPSYTFVSTAN--------AFVLRGAKIVFV--DIRPDTMNIDETLIEAAITP-KTRAIVPV-HYAGVACEMDTI 138 (375)
T ss_pred CCEEEECCCCcHHHHH--------HHHHcCCEEEEE--ecCCCcCCcCHHHHHHhcCC-CCeEEEEe-CCCCCccCHHHH
Confidence 9999999977776543 344567666545 46655678999999999987 89998875 237888899999
Q ss_pred HHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEeCCC--CcCCCCCceEEEEeCC
Q 018231 216 RKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTH--KSLRGPRGAMIFFRKG 273 (359)
Q Consensus 216 ~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~--K~l~gp~gG~l~~~~~ 273 (359)
.++|+++|+++|+|++|+.|....+..... ..|+.++|+| |.+..+.||+++++++
T Consensus 139 ~~la~~~~i~vIeD~a~a~g~~~~~~~~g~--~~~~~~~Sf~~~K~l~~g~gG~~~~~~~ 196 (375)
T PRK11706 139 MALAKKHNLFVVEDAAQGVMSTYKGRALGT--IGHIGCFSFHETKNYTAGEGGALLINDP 196 (375)
T ss_pred HHHHHHcCCEEEEECccccccccCCeeeec--CcCEEEEeCCCCccccccCCeEEEECCH
Confidence 999999999999999999887432211111 2477777776 9987666687888764
No 142
>PRK01533 histidinol-phosphate aminotransferase; Validated
Probab=99.77 E-value=1e-17 Score=159.67 Aligned_cols=221 Identities=17% Similarity=0.171 Sum_probs=149.4
Q ss_pred cCceeeCCCCC--CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-
Q 018231 47 KGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP- 123 (359)
Q Consensus 47 ~~i~l~~~~~~--~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~- 123 (359)
+.|+|..++++ +|+.+++++.+.+.... .|| . .+..+ +++.+++++|++++ +|++|+|++
T Consensus 30 ~~i~l~~nen~~~~~~~v~~a~~~~~~~~~--~Yp------~-~g~~~----Lr~aia~~~~~~~~----~I~vt~Gs~e 92 (366)
T PRK01533 30 SFVKLASNENPFGCSPRVLDELQKSWLDHA--LYP------D-GGATT----LRQTIANKLHVKME----QVLCGSGLDE 92 (366)
T ss_pred ceEEeCCCCCCCCCCHHHHHHHHHHHHhcC--cCC------C-CCHHH----HHHHHHHHhCCCcc----eEEECCCHHH
Confidence 56899998886 68899999987654411 122 1 22333 45778888899875 499999999
Q ss_pred HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc-
Q 018231 124 SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG- 202 (359)
Q Consensus 124 a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~- 202 (359)
++..++.++++|||+|++++ |.|..+...+...|.++..++ .+ ++.+|++++++.+++ ++++++++
T Consensus 93 ~i~~~~~~l~~~gd~vlv~~--------P~y~~~~~~~~~~g~~v~~v~--~~--~~~~d~~~l~~~~~~-~~~~v~i~~ 159 (366)
T PRK01533 93 VIQIISRAVLKAGDNIVTAG--------ATFPQYRHHAIIEGCEVKEVA--LN--NGVYDLDEISSVVDN-DTKIVWICN 159 (366)
T ss_pred HHHHHHHHhcCCCCEEEEcC--------CcHHHHHHHHHHcCCEEEEee--cC--CCCcCHHHHHHHhCc-CCcEEEEeC
Confidence 87778899999999999998 555555545666787776665 33 356899999998877 89999988
Q ss_pred CCC-CCChhhHHHHHHH---HHHcCCEEEEeccccccccccCCCCC--CC-C--CceEEEeCCCCcCC--CCCceEEEEe
Q 018231 203 ASA-YARLYDYERIRKV---CNKQKAIMLADMAHISGLVAAGVIPS--PF-E--YADVVTTTTHKSLR--GPRGAMIFFR 271 (359)
Q Consensus 203 ~~n-~g~~~~l~~i~~l---a~~~~~~vivD~a~~~g~~~~~~~~~--~~-~--~~D~v~~s~~K~l~--gp~gG~l~~~ 271 (359)
|+| ||...+.+++.++ |++++ ++|+|+++. .....+.... +. . ..-+++.|++|.++ |.+-|+++.+
T Consensus 160 P~NPTG~~~~~~~l~~l~~~~~~~~-~~iiDe~y~-~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~i~~ 237 (366)
T PRK01533 160 PNNPTGTYVNDRKLTQFIEGISENT-LIVIDEAYY-EYVTAKDFPETLPLLEKHKNILVLRTFSKAYGLASFRVGYAVGH 237 (366)
T ss_pred CCCCCCCCcCHHHHHHHHHhCCCCC-EEEEEccHH-HhhccccCcchhHHhccCCCEEEEeCchHHhcChHHHHhHHhCC
Confidence 888 9987776655555 44555 677899975 2221110000 00 0 14589999999874 3333999887
Q ss_pred CCcchhccCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHH
Q 018231 272 KGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVAL 316 (359)
Q Consensus 272 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al 316 (359)
+ ++.+.+.....+ .+.+.+...++.++|
T Consensus 238 ~--------------~~~~~l~~~~~~---~~~~~~~q~aa~~~l 265 (366)
T PRK01533 238 E--------------ELIEKLNVVRLP---FNVSSLAQKAATIAF 265 (366)
T ss_pred H--------------HHHHHHHHhcCC---CCcCHHHHHHHHHHh
Confidence 6 555555443221 345666666666666
No 143
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=99.77 E-value=9.3e-18 Score=174.03 Aligned_cols=170 Identities=15% Similarity=0.074 Sum_probs=133.0
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-----HHHHHHHhhcCC-CC----eeeecCCCCCcccCccccccc
Q 018231 89 YIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-----SNFQVYTALLKP-HD----RIMALDLPHGGHLSHGYQTDT 158 (359)
Q Consensus 89 ~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-----a~~~~~~al~~~-Gd----~Vl~~~~~~~~~~~~~~~~~~ 158 (359)
+..++-..+++++++++|++. |.++++++ ++.+++.++.++ || +|+++..+|+++..++.
T Consensus 565 g~~~~~~~~r~~la~i~g~~~------v~f~pnaga~ge~a~~~vi~~~~~~~Gd~~r~~vli~~~aH~sn~a~a~---- 634 (993)
T PLN02414 565 GYQEMFEDLGDLLCEITGFDS------FSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHGTNPASAA---- 634 (993)
T ss_pred HHHHHHHHHHHHHHHHhCCCe------EEEcCCCcHHHHHHHHHHHHHHHhccCCCCCCEEEeCCCcCccCHHHHH----
Confidence 344444558899999999953 88888776 666688888866 88 89999999999977654
Q ss_pred cceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhh--hCCcEEEEc-CCC-CCChhhHHHHHHHHHHcCCEEEEeccccc
Q 018231 159 KKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL--FRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHIS 234 (359)
Q Consensus 159 ~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~--~~~k~v~l~-~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~ 234 (359)
+.|.+++.++ .+ +++.+|+++|++++++ .++++|+++ ++| .|...|+++|.++|+++|+++++|++|..
T Consensus 635 ----~~G~~vv~v~--~d-~~G~vDle~L~~~i~~~~~~ta~V~vt~pSn~gg~e~~I~eI~~iah~~Galv~vDgAq~~ 707 (993)
T PLN02414 635 ----MCGMKIVVVG--TD-AKGNINIEELRKAAEAHKDNLAALMVTYPSTHGVYEEGIDEICDIIHDNGGQVYMDGANMN 707 (993)
T ss_pred ----HCCCEEEEec--cC-CCCCcCHHHHHHHHhccCCCeEEEEEECCCccccccchHHHHHHHHHHcCCEEEEEecCHH
Confidence 3476776675 45 5689999999999984 267888888 788 55778899999999999999999999988
Q ss_pred ccccc-CCCCCCCCCceEEEeCCCCcCCCCC-----c-eEEEEeCCcchhc
Q 018231 235 GLVAA-GVIPSPFEYADVVTTTTHKSLRGPR-----G-AMIFFRKGVKEIN 278 (359)
Q Consensus 235 g~~~~-~~~~~~~~~~D~v~~s~~K~l~gp~-----g-G~l~~~~~~~~~~ 278 (359)
+.... +....+ +|++++|.||+|++|. | |++++++.+.+.+
T Consensus 708 a~~~l~~p~~~G---aD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~L~p~l 755 (993)
T PLN02414 708 AQVGLTSPGFIG---ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFL 755 (993)
T ss_pred hccCcCCccccC---CCEEEecCCccCCcCcccCCCCeeeEEEchhhcccC
Confidence 77443 223344 9999999999987544 4 8999988654433
No 144
>PLN02452 phosphoserine transaminase
Probab=99.77 E-value=9.6e-18 Score=158.62 Aligned_cols=260 Identities=14% Similarity=0.093 Sum_probs=161.5
Q ss_pred cCceeeCCCCCCcHHHHHHHHhhhhccCCCCCC--CCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-
Q 018231 47 KGLELIPSENFTSVSVMQAVGSVMTNKYSEGYP--GARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP- 123 (359)
Q Consensus 47 ~~i~l~~~~~~~~~~v~~al~~~~~~~~~~g~~--~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~- 123 (359)
+.+++.||+..+|++|++++.+.+.+.-..|.. .-.+ .+.++ .++-+.+++.++++++++.+. ..+++..|++
T Consensus 7 ~~~~f~pGP~~lp~~Vl~~~~~~~~~~~~~g~s~~~~sH-Rs~~f-~~i~~~~~~~L~~l~~~p~~y--~v~~l~Gsgt~ 82 (365)
T PLN02452 7 RVFNFSAGPATLPANVLAKAQAELYNWEGSGMSVMEMSH-RGKEF-LSIIQKAEADLRELLDIPDNY--EVLFLQGGAST 82 (365)
T ss_pred ceEeeeCCCCCCCHHHHHHHHHHHhcccccCccccccCC-CchHH-HHHHHHHHHHHHHHhCCCCCc--eEEEEeCccHH
Confidence 357899999999999999999987652222211 1111 12233 344455889999999984332 2234434444
Q ss_pred HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcC
Q 018231 124 SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGA 203 (359)
Q Consensus 124 a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~~ 203 (359)
++.+++..++.+||++++.. .+.++-... ..+...|...+....+.......+|+++++. .+ +.+.|.++.
T Consensus 83 ~~ea~~~nl~~~~~~~l~~~---~G~fg~r~~---~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~v~~~h 153 (365)
T PLN02452 83 QFAAIPLNLCKPGDKADFVV---TGSWSKKAA---KEAKKYCKTNVIASGKDEKYTKIPSVSEWEL--TP-DAKFVHICA 153 (365)
T ss_pred HHHHHHHhcCCCCCeEEEEE---CCHHHHHHH---HHHHHhCCCcEEEecCCCCCCCCCChHHcCC--CC-CCcEEEECC
Confidence 88889999999999998876 333322111 1222334322222101110112567777532 23 577777775
Q ss_pred CC--CCC-hhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEeCCCCcCCCCCc-eEEEEeCCcchhcc
Q 018231 204 SA--YAR-LYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEINK 279 (359)
Q Consensus 204 ~n--~g~-~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~~~ 279 (359)
++ +|. ..|++++. ++++++|+++++|..++++..++ +|+ +|+||++ ||+| |++++++++.....
T Consensus 154 nETstGv~~~~~~~i~------~~~lvVDa~Ss~g~~pidv~~~~---v~~--~saqK~l-GP~Gl~~v~vr~~~l~~~~ 221 (365)
T PLN02452 154 NETIHGVEFKDYPDVG------NVPLVADMSSNFLSKPVDVSKYG---VIY--AGAQKNV-GPSGVTIVIIRKDLIGNAR 221 (365)
T ss_pred CCCCCcEecCcccccC------CCeEEEECCccccCcccCHHHcC---EEE--Eeccccc-CCCCeEEEEEcHHHHhhcc
Confidence 55 676 47777664 38999999999999999988766 555 6999988 6999 99999986432211
Q ss_pred CCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhccccchhHhhhccc
Q 018231 280 QGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLH 334 (359)
Q Consensus 280 ~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~~l~ 334 (359)
...+..+++..... ....++||+++.++++.++|+++.++++++.+.++..+
T Consensus 222 ~~~~~~~~~~~~~~---~~s~~~TP~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~ 273 (365)
T PLN02452 222 PITPGMLDYKIHAE---NDSLYNTPPCFGIYMCGLVFEDLLAQGGLKAMEKRNIR 273 (365)
T ss_pred cCCCchhhHHHHHh---cCCccCChhHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 11111112221111 11334899999999999999999876566555554333
No 145
>PRK03158 histidinol-phosphate aminotransferase; Provisional
Probab=99.77 E-value=1.1e-17 Score=159.06 Aligned_cols=196 Identities=15% Similarity=0.128 Sum_probs=138.0
Q ss_pred cCceeeCCCCC--CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-
Q 018231 47 KGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP- 123 (359)
Q Consensus 47 ~~i~l~~~~~~--~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~- 123 (359)
+.++|..++++ +++.+.+++.+.+.. . . +|+. .+..+ +++.++++++++++ +|++|+|++
T Consensus 30 ~~i~l~~n~~~~~~~~~v~~a~~~~~~~-~--~-----~~p~-~g~~~----lr~~ia~~~~~~~~----~i~~t~G~~~ 92 (359)
T PRK03158 30 KIVKLASNENPYGPSPKVKEAIAAHLDE-L--A-----LYPD-GYAPE----LRTKVAKHLGVDEE----QLLFGAGLDE 92 (359)
T ss_pred ceEEecCCCCCCCCCHHHHHHHHHHHHH-h--h-----cCCC-CcHHH----HHHHHHHHhCCCHH----HEEECCCHHH
Confidence 56889887764 578899998876653 2 1 1121 23344 45778888898775 499999999
Q ss_pred HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc-
Q 018231 124 SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG- 202 (359)
Q Consensus 124 a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~- 202 (359)
++..++.+++++||+|+++++.|+. +...+...|.++..+++ + ++.+|++++++.+++ ++++++++
T Consensus 93 ~l~~~~~~~~~~gd~v~~~~p~y~~--------~~~~~~~~g~~~~~~~~--~--~~~~d~~~l~~~~~~-~~~~v~i~~ 159 (359)
T PRK03158 93 VIQMISRALLNPGTNTVMAEPTFSQ--------YRHNAIIEGAEVREVPL--K--DGGHDLEAMLKAIDE-QTKIVWICN 159 (359)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCHHH--------HHHHHHHcCCeEEEEec--C--CCCcCHHHHHHhcCC-CCCEEEEeC
Confidence 7776888899999999999955443 33334455766666654 3 367899999998877 89999887
Q ss_pred CCC-CCChhhHHHHHHHHHH--cCCEEEEeccccccccccCCCCC-C---CCCceEEEeCCCCcCC--CCCceEEEEeC
Q 018231 203 ASA-YARLYDYERIRKVCNK--QKAIMLADMAHISGLVAAGVIPS-P---FEYADVVTTTTHKSLR--GPRGAMIFFRK 272 (359)
Q Consensus 203 ~~n-~g~~~~l~~i~~la~~--~~~~vivD~a~~~g~~~~~~~~~-~---~~~~D~v~~s~~K~l~--gp~gG~l~~~~ 272 (359)
|+| ||...+.+++.++++. +|+++|+|+++............ . .....+++.|++|.++ |.+-|++++++
T Consensus 160 p~NPtG~~~~~~~l~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~~ 238 (359)
T PRK03158 160 PNNPTGTYVNHEELLSFLESVPSHVLVVLDEAYYEYVTAEDYPDTLPLLEKYENLIVLRTFSKAYGLAALRVGYGIASE 238 (359)
T ss_pred CCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchHhhcCCcccccHHHHHHhcCCEEEEEechHhhcCcchhhehhcCCH
Confidence 888 9999999998888876 59999999998543321110000 0 0024688899999874 34449999876
No 146
>PRK07503 methionine gamma-lyase; Provisional
Probab=99.76 E-value=1e-17 Score=161.32 Aligned_cols=154 Identities=16% Similarity=0.173 Sum_probs=115.9
Q ss_pred HHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccC
Q 018231 97 CQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLN 176 (359)
Q Consensus 97 ~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 176 (359)
+++.+++++|++. .|+++||+.++.+++.++++|||+|+++.+.|++.+.. ....+...|++++.++ .+
T Consensus 70 le~~lA~l~g~~~-----~i~~~sG~~Al~~~l~~ll~~Gd~Viv~~~~y~~t~~~----~~~~~~~~G~~v~~vd--~~ 138 (403)
T PRK07503 70 LEQRMASLEGGEA-----AVALASGMGAITATLWTLLRPGDEVIVDQTLYGCTFAF----LHHGLGEFGVTVRHVD--LT 138 (403)
T ss_pred HHHHHHHHhCCCc-----EEEEcCHHHHHHHHHHHHcCCCCEEEEccCccchHHHH----HHHHHhhCCEEEEEeC--CC
Confidence 4488999999865 48888888787778888899999999998766543221 1112233465554443 32
Q ss_pred CCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEe
Q 018231 177 ESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTT 254 (359)
Q Consensus 177 ~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~ 254 (359)
|++++++.+++ +||+|+++ ++| +|.+.|+++|.++|+++|+++|+|++|+.+...... .. ++|++++
T Consensus 139 ------d~~~l~~~i~~-~tklV~le~p~NPtG~~~di~~I~~la~~~gi~lIvD~a~a~~~~~~~l-~~---g~Di~v~ 207 (403)
T PRK07503 139 ------DPAALKAAISD-KTRMVYFETPANPNMRLVDIAAVAEIAHGAGAKVVVDNTYCTPYLQRPL-EL---GADLVVH 207 (403)
T ss_pred ------CHHHHHHhcCc-cCcEEEEeCCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccCCch-hh---CCCEEEc
Confidence 78999999987 89999997 888 899999999999999999999999999766432211 12 4899999
Q ss_pred CCCCcCCCCC---ceEEEEeC
Q 018231 255 TTHKSLRGPR---GAMIFFRK 272 (359)
Q Consensus 255 s~~K~l~gp~---gG~l~~~~ 272 (359)
|++|+++|+. ||+++.++
T Consensus 208 S~tK~l~g~gd~~gG~v~~~~ 228 (403)
T PRK07503 208 SATKYLGGHGDITAGLVVGGK 228 (403)
T ss_pred cccccccCCCceeEEEEEcCH
Confidence 9999998764 57777544
No 147
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=99.76 E-value=2.2e-17 Score=156.85 Aligned_cols=198 Identities=16% Similarity=0.168 Sum_probs=138.7
Q ss_pred cCceeeCCCCC--CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-
Q 018231 47 KGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP- 123 (359)
Q Consensus 47 ~~i~l~~~~~~--~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~- 123 (359)
+.++|..++|+ +|+.+++++.+.+......+|+ . ....+ +++.+++++|++.++ +|++|+|++
T Consensus 27 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~------~-~~~~~----lr~~ia~~~~~~~~~---~I~~t~G~~~ 92 (356)
T PRK04870 27 GMVKLDAMENPYRLPAELRAELGERLAEVALNRYP------D-PRAAA----LKAALRAAMGVPAGA---DVLLGNGSDE 92 (356)
T ss_pred CceeCcCCCCCCCCCHHHHHHHHHHhhccccccCC------C-CCHHH----HHHHHHHHhCcCCCC---cEEEcCCHHH
Confidence 57889888884 6899999999877531111232 2 12233 557788888886532 599999999
Q ss_pred HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc-
Q 018231 124 SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG- 202 (359)
Q Consensus 124 a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~- 202 (359)
++..++.+++++||+|+++++. |..+...+...|++++.++ .+ +++.+|++++++.+.+.++++++++
T Consensus 93 ~i~~~~~~~~~~gd~vlv~~P~--------y~~~~~~~~~~g~~~~~i~--~~-~~~~~d~~~l~~~~~~~~~~~v~l~~ 161 (356)
T PRK04870 93 LIQLLALACAKPGATVLAPEPG--------FVMYRMSAKLAGLEFVGVP--LT-ADFTLDLPAMLAAIAEHRPALVFLAY 161 (356)
T ss_pred HHHHHHHHhcCCCCEEEECCCC--------HHHHHHHHHHcCCEEEEec--CC-CCCCCCHHHHHHHhhcCCCCEEEEcC
Confidence 7776888889999999999844 4434434556676665554 55 5578999999999875589999998
Q ss_pred CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCC--CceEEEeCCCCcCC--CCCceEEEEeC
Q 018231 203 ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE--YADVVTTTTHKSLR--GPRGAMIFFRK 272 (359)
Q Consensus 203 ~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~--~~D~v~~s~~K~l~--gp~gG~l~~~~ 272 (359)
|+| ||...+.+++.++++..++++|+|+++.. ........ .+. ...+++.|.+| ++ |.+-|+++.++
T Consensus 162 p~NPtG~~~~~~~~~~i~~~~~~~ii~De~y~~-~~~~~~~~-~~~~~~~vi~~~S~SK-~~~~GlRiG~~i~~~ 233 (356)
T PRK04870 162 PNNPTGNLFDDADVERIIEAAPGLVVVDEAYQP-FAGDSWLP-RLARFPNLLVMRTVSK-LGLAGLRLGYLAGHP 233 (356)
T ss_pred CCCCCCCCCCHHHHHHHHHHCCCEEEEECCchh-hcCcchHH-HHhhCCCEEEEecchh-hhhHHHhhhhhhCCH
Confidence 888 99888888888887776889999999742 11111000 001 13588999999 52 33349998876
No 148
>PLN02955 8-amino-7-oxononanoate synthase
Probab=99.76 E-value=4.3e-17 Score=156.97 Aligned_cols=243 Identities=15% Similarity=0.122 Sum_probs=164.7
Q ss_pred CcHHHHHHHHhhhhccCCCCCCCCcccCCc-hhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhhc---
Q 018231 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGN-EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALL--- 133 (359)
Q Consensus 58 ~~~~v~~al~~~~~~~~~~g~~~~~~~~~~-~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al~--- 133 (359)
..|.++++..+.+.. |..|..+++...+. ....++| +.+++++|.+. .+++.||..+|..++.++.
T Consensus 117 ~~p~v~~a~~~ai~~-yG~g~~gSrl~~G~~~~h~~LE----~~LA~f~g~e~-----all~sSGy~AN~~~i~aL~~~~ 186 (476)
T PLN02955 117 SHPTISNAAANAAKE-YGMGPKGSALICGYTTYHRLLE----SSLADLKKKED-----CLVCPTGFAANMAAMVAIGSVA 186 (476)
T ss_pred CCHHHHHHHHHHHHH-cCCCCCCcCccccChHHHHHHH----HHHHHHHCCCc-----EEEECChHHHHHHHHHHHhhcc
Confidence 378999999998875 64455555443333 3345555 88999999876 4999999999998888872
Q ss_pred -----------CCCCeeeecCCCCCcccCccccccccceeeeee--eeEEEecccCCCCCCCCHHHHHHHhhhh--CCcE
Q 018231 134 -----------KPHDRIMALDLPHGGHLSHGYQTDTKKISAVSI--FFETMPYRLNESTGYIDYDQLEKSATLF--RPKL 198 (359)
Q Consensus 134 -----------~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~v~~~~~~~~~~~d~e~l~~~i~~~--~~k~ 198 (359)
.++|.|+.....|.+.+. ++.+... ....+.++.+ |+++|++.++.. +.++
T Consensus 187 ~~~~~~~~~~~~~~d~i~~D~~~HaSI~d--------G~~ls~~~~~a~~~~f~HN------D~~~Le~~L~~~~~~~~~ 252 (476)
T PLN02955 187 SLLAASGKPLKNEKVAIFSDALNHASIID--------GVRLAERQGNVEVFVYRHC------DMYHLNSLLSSCKMKRKV 252 (476)
T ss_pred ccccccccccCCCCcEEEEeccchHHHHH--------HHHhccccCCceEEEeCCC------CHHHHHHHHHhCCCCceE
Confidence 456677777767776644 3333311 1223333455 899999988642 2345
Q ss_pred EEEc--CCCCCChhhHHHHHHHHHHcCCEEEEecccccccccc---CC-CCCCC-CCceEEEeCCCCcCCCCCceEEEEe
Q 018231 199 IVAG--ASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAA---GV-IPSPF-EYADVVTTTTHKSLRGPRGAMIFFR 271 (359)
Q Consensus 199 v~l~--~~n~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~---~~-~~~~~-~~~D~v~~s~~K~l~gp~gG~l~~~ 271 (359)
|++. .++.|.+.|+++|.++|++||+++|+|++|+.|.+.. +. ...+. ...|+++.+.+|.| |..||+++++
T Consensus 253 Vv~EgV~SmdGdiapL~eL~~L~~~~ga~LiVDEAH~~Gv~G~~G~G~~e~~g~~~di~ii~~TLsKA~-G~~GGfi~gs 331 (476)
T PLN02955 253 VVTDSLFSMDGDFAPMEELSQLRKKYGFLLVIDDAHGTFVCGENGGGVAEEFNCEADVDLCVGTLSKAA-GCHGGFIACS 331 (476)
T ss_pred EEEeCCCCCCCCcCCHHHHHHHHHHcCcEEEEcccccCceecCCCCcHHHHhCCCCCCcEEEEeCccch-hccCceeecH
Confidence 5554 5668999999999999999999999999999887643 11 11111 14799999999987 5668999998
Q ss_pred CCcchhccCCcchhhhHHHhhccccCCCCCCC-CcHHHHHHHHHHHHHHhccccchhHhhhccccchhhhhcc
Q 018231 272 KGVKEINKQGKEVFYDYEEKINQAVFPGLQGG-PHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQ 343 (359)
Q Consensus 272 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gt-~~~~~i~al~~Al~~~~~~~~~~~~~~~~l~~~~~~~~~~ 343 (359)
+ ++.+.+.....+..++| .+....+|..+|++.+.++ ..++..|+.+.++++.+
T Consensus 332 ~--------------~~~~~l~~~~~~~ifStalpp~~aaa~laal~l~~~~----~~~r~~L~~n~~~fr~~ 386 (476)
T PLN02955 332 K--------------KWKQLIQSRGRSFIFSTAIPVPMAAAAYAAVVVARKE----KWRRKAIWERVKEFKAL 386 (476)
T ss_pred H--------------HHHHHHHHhCCCCeecccccHHHHHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHh
Confidence 7 44555443333334444 4455666777888877654 24667788887777553
No 149
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=99.76 E-value=8.7e-18 Score=161.60 Aligned_cols=154 Identities=23% Similarity=0.230 Sum_probs=115.4
Q ss_pred HHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccC
Q 018231 97 CQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLN 176 (359)
Q Consensus 97 ~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 176 (359)
+++.++++.|.+. .+++++|+.++.+++.++++|||+|+++.+.|++....... .....|..+..+ +.
T Consensus 65 Le~~lA~l~g~~~-----~v~~~sG~~Ai~~~l~all~pGD~Vvv~~p~Y~~t~~~~~~----~~~~~g~~v~~v--~~- 132 (405)
T PRK08776 65 LGEALAELEGGAG-----GVITATGMGAINLVLNALLQPGDTLVVPHDAYGGSWRLFNA----LAKKGHFALITA--DL- 132 (405)
T ss_pred HHHHHHHHhCCCc-----eEEEcCHHHHHHHHHHHHhCCCCEEEEccCCchHHHHHHHH----HHHhcCcEEEEE--CC-
Confidence 4488899999753 48888887677778889999999999998777653321111 111224333333 22
Q ss_pred CCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCC-CceEEE
Q 018231 177 ESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE-YADVVT 253 (359)
Q Consensus 177 ~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~-~~D~v~ 253 (359)
.|++++++.+++ +||+|+++ |+| +|.+.++++|.++|+++|+++|+|++|+.+.... ++. ++|+++
T Consensus 133 -----~d~~~l~~~i~~-~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~~~~~~-----pl~~gaDivv 201 (405)
T PRK08776 133 -----TDPRSLADALAQ-SPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLSPALQK-----PLEFGADLVL 201 (405)
T ss_pred -----CCHHHHHHhcCc-CCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCcccccCC-----cccccCCEEE
Confidence 388999999987 89999998 888 8999999999999999999999999997654321 222 589999
Q ss_pred eCCCCcCCCCC---ceEEEEeCC
Q 018231 254 TTTHKSLRGPR---GAMIFFRKG 273 (359)
Q Consensus 254 ~s~~K~l~gp~---gG~l~~~~~ 273 (359)
+|++|+|+|+. +|+++++++
T Consensus 202 ~S~tK~l~g~~~~~~G~vv~~~~ 224 (405)
T PRK08776 202 HSTTKYINGHSDVVGGAVVARDA 224 (405)
T ss_pred ecCceeecCCCCceEEEEEeCCH
Confidence 99999998875 477777664
No 150
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=99.76 E-value=1.2e-17 Score=160.21 Aligned_cols=154 Identities=15% Similarity=0.162 Sum_probs=116.7
Q ss_pred HHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccC
Q 018231 97 CQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLN 176 (359)
Q Consensus 97 ~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 176 (359)
+++.+++++|.+. .++++||+.++..++.+++++||+|+++.+.|++.+... ...+...|+.+..++ .+
T Consensus 64 le~~lA~l~g~~~-----av~~~sG~~Ai~~~l~al~~~Gd~Vi~~~~~y~~t~~~~----~~~~~~~G~~~~~vd--~~ 132 (391)
T TIGR01328 64 LEGRIAFLEGTEA-----AVATSSGMGAIAATLLTILKAGDHLISDECLYGCTFALL----EHALTKFGIQVDFIN--MA 132 (391)
T ss_pred HHHHHHHHhCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEecCcchHHHHHH----HHHHhcCCeEEEEEC--CC
Confidence 3388999999875 477777777888788899999999999987666543221 112233465554442 33
Q ss_pred CCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEe
Q 018231 177 ESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTT 254 (359)
Q Consensus 177 ~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~ 254 (359)
|++++++.+++ +|++|+++ ++| +|.+.|+++|.++|+++|+++|+|++++.+...... .. ++|++++
T Consensus 133 ------d~e~l~~~i~~-~tklV~le~p~Np~G~v~dl~~I~~la~~~gi~livD~a~a~~~~~~~~-~~---g~Divv~ 201 (391)
T TIGR01328 133 ------IPEEVKAHIKD-NTKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVDNTFATPMLTNPV-AL---GVDVVVH 201 (391)
T ss_pred ------CHHHHHHhhcc-CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCchhccCCch-hc---CCCEEEc
Confidence 79999999987 89999987 888 889999999999999999999999999876543221 11 5899999
Q ss_pred CCCCcCCCCC---ceEEEEeC
Q 018231 255 TTHKSLRGPR---GAMIFFRK 272 (359)
Q Consensus 255 s~~K~l~gp~---gG~l~~~~ 272 (359)
|++|+++|+. ||+++.++
T Consensus 202 S~sK~lgg~g~~~gG~v~~~~ 222 (391)
T TIGR01328 202 SATKYIGGHGDVVAGLICGKA 222 (391)
T ss_pred cccccccCCCCceEEEEEcCH
Confidence 9999998765 47776655
No 151
>PRK07568 aspartate aminotransferase; Provisional
Probab=99.76 E-value=1.2e-16 Score=154.03 Aligned_cols=203 Identities=13% Similarity=0.143 Sum_probs=132.3
Q ss_pred cCceeeCCCCC--CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcC--CCCCCCceeEEECCCh
Q 018231 47 KGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFR--LDPEKWGVNVQSLSGS 122 (359)
Q Consensus 47 ~~i~l~~~~~~--~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g--~~~~~~~~~v~~tsG~ 122 (359)
+.++|..+.+. +++.+.+++.+...... +| +...+..++++++.+++.. .| ++++ +|++|+|+
T Consensus 31 ~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~--~Y------~~~~g~~~lr~~ia~~~~~-~~~~~~~~----~i~~t~G~ 97 (397)
T PRK07568 31 KVYHLNIGQPDIKTPEVFFEAIKNYDEEVL--AY------SHSQGIPELREAFAKYYKK-WGIDVEPD----EILITNGG 97 (397)
T ss_pred CEEEecCCCCCCCCCHHHHHHHHHHhcCCc--Cc------CCCCCCHHHHHHHHHHHHH-hCCCCCcc----eEEEcCCh
Confidence 45778776653 57888888876543211 22 3334556666655565542 33 4554 59999999
Q ss_pred H-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCC-CCHHHHHHHhhhhCCcEEE
Q 018231 123 P-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGY-IDYDQLEKSATLFRPKLIV 200 (359)
Q Consensus 123 ~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~-~d~e~l~~~i~~~~~k~v~ 200 (359)
+ ++..++.+++++||+|+++++.|..+ ...+...|.++..++.+.+ +++. .|++++++.+++ ++++|+
T Consensus 98 ~~al~~~~~~l~~~gd~Vl~~~p~y~~~--------~~~~~~~g~~~~~v~~~~~-~g~~~~~~~~l~~~~~~-~~~~v~ 167 (397)
T PRK07568 98 SEAILFAMMAICDPGDEILVPEPFYANY--------NGFATSAGVKIVPVTTKIE-EGFHLPSKEEIEKLITP-KTKAIL 167 (397)
T ss_pred HHHHHHHHHHhcCCCCEEEEecCCCccH--------HHHHHHcCCEEEEeecCcc-cCCCCCCHHHHHHhcCc-cceEEE
Confidence 9 87778888899999999998555432 1123345666655553222 3333 468999999887 899988
Q ss_pred Ec-CCC-CCChh---hHHHHHHHHHHcCCEEEEeccccccccccCCCC--CCCC---CceEEEeCCCCcCC--CCCceEE
Q 018231 201 AG-ASA-YARLY---DYERIRKVCNKQKAIMLADMAHISGLVAAGVIP--SPFE---YADVVTTTTHKSLR--GPRGAMI 268 (359)
Q Consensus 201 l~-~~n-~g~~~---~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~--~~~~---~~D~v~~s~~K~l~--gp~gG~l 268 (359)
++ |+| +|... ++++|.++|+++|+++|+|+++..-........ ..+. ..-+++.|.+|.++ |.+.|++
T Consensus 168 i~~p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~ 247 (397)
T PRK07568 168 ISNPGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSVSKRYSACGARIGCL 247 (397)
T ss_pred EECCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCCCcCCEEEEecchhhccCCCcceEEE
Confidence 87 888 88655 578899999999999999999753211110000 0111 12388899999875 4444999
Q ss_pred EEeC
Q 018231 269 FFRK 272 (359)
Q Consensus 269 ~~~~ 272 (359)
++.+
T Consensus 248 ~~~~ 251 (397)
T PRK07568 248 ISKN 251 (397)
T ss_pred ecCC
Confidence 8864
No 152
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=99.76 E-value=9.2e-18 Score=160.58 Aligned_cols=159 Identities=17% Similarity=0.148 Sum_probs=117.7
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeee
Q 018231 88 EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIF 167 (359)
Q Consensus 88 ~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~ 167 (359)
....++| +.+++++|.+. .+++++|+.++..++.++++|||+|+++.+.|++....... ....|.+
T Consensus 53 p~~~~lE----~~lA~l~g~~~-----~l~~~sG~~Ai~~~l~~ll~~GD~Vlv~~~~y~~~~~~~~~-----~~~~g~~ 118 (385)
T PRK08574 53 PTLRPLE----EALAKLEGGVD-----ALAFNSGMAAISTLFFSLLKAGDRVVLPMEAYGTTLRLLKS-----LEKFGVK 118 (385)
T ss_pred ccHHHHH----HHHHHHhCCCc-----EEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHH-----hhccCcE
Confidence 3455555 88999999754 36666666688878889999999999999888776432221 1223433
Q ss_pred eEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCC
Q 018231 168 FETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP 245 (359)
Q Consensus 168 ~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~ 245 (359)
+..+ .+|++++++.+++.++|+|+++ ++| +|.+.|+++|.++|+++|+++|+|++|+.+.....+ ..
T Consensus 119 v~~~---------~~d~~~l~~~i~~~~tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD~t~a~~~~~~~l-~~- 187 (385)
T PRK08574 119 VVLA---------YPSTEDIIEAIKEGRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTFATPLLYRPL-RH- 187 (385)
T ss_pred EEEE---------CCCHHHHHHhcCccCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCccccCChh-hh-
Confidence 3222 2368899999875479999987 788 888999999999999999999999999877553322 22
Q ss_pred CCCceEEEeCCCCcCCCCC---ceEEEEeCC
Q 018231 246 FEYADVVTTTTHKSLRGPR---GAMIFFRKG 273 (359)
Q Consensus 246 ~~~~D~v~~s~~K~l~gp~---gG~l~~~~~ 273 (359)
++|++++|++|+++|+. ||+++++++
T Consensus 188 --GaDivv~S~sK~l~g~~d~~gG~vi~~~~ 216 (385)
T PRK08574 188 --GADFVVHSLTKYIAGHNDVVGGVAVAWSG 216 (385)
T ss_pred --CCcEEEeeCceeecCCCCceeEEEEECcH
Confidence 48999999999998864 576777653
No 153
>PRK06855 aminotransferase; Validated
Probab=99.76 E-value=8.4e-17 Score=156.70 Aligned_cols=204 Identities=14% Similarity=0.106 Sum_probs=136.6
Q ss_pred cCceeeCCCC-----CCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCC--CCCCCceeEEEC
Q 018231 47 KGLELIPSEN-----FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRL--DPEKWGVNVQSL 119 (359)
Q Consensus 47 ~~i~l~~~~~-----~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~--~~~~~~~~v~~t 119 (359)
..+.+..|+. .+|+.+.+++.+.+.+.. ...|+...+..++++++.+++.+.+|+ +++ +|++|
T Consensus 33 ~~~~~~~G~p~~~~~~~p~~~~~a~~~~~~~~~------~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~----~I~it 102 (433)
T PRK06855 33 KITWENIGDPIAKGEKIPDWMKEIVAELVMDDK------SYGYCPTKGVLETREFLAELNNKRGGAQITPD----DIIFF 102 (433)
T ss_pred cccccccCCCcccCCCCCHHHHHHHHHHhhcCC------CCCCCCCCCCHHHHHHHHHHHHhccCCCCCHh----HEEEc
Confidence 4577765554 578888888888764311 112343456778888888998887775 443 59999
Q ss_pred CChH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCC-CCCCCCHHHHHHHhhh-hCC
Q 018231 120 SGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNE-STGYIDYDQLEKSATL-FRP 196 (359)
Q Consensus 120 sG~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~-~~~~~d~e~l~~~i~~-~~~ 196 (359)
+|++ ++..++ .+++|||.|++.++.|+.+.. . .....|..+..++ +++ +++.+|+++|++.++. .++
T Consensus 103 ~G~~~al~~~~-~l~~~Gd~Vlv~~P~Y~~~~~-~------~~~~~g~~~v~v~--~~~~~~~~~d~~~l~~~~~~~~~~ 172 (433)
T PRK06855 103 NGLGDAIAKIY-GLLRREARVIGPSPAYSTHSS-A------EAAHAGYPPVTYR--LDPENNWYPDLDDLENKVKYNPSI 172 (433)
T ss_pred CcHHHHHHHHH-HhcCCCCeEEEeCCCCchHHH-H------HHHhcCCeEEEEe--cccccCCCCCHHHHHHHHhcCCCc
Confidence 9999 776565 478999999999966654211 0 0112244443444 442 4568999999999863 257
Q ss_pred cEEEEc-CCC-CCChhh---HHHHHHHHHHcCCEEEEeccccccccccCCCCCCC----C-CceEEEeCCCCcCC--CCC
Q 018231 197 KLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPF----E-YADVVTTTTHKSLR--GPR 264 (359)
Q Consensus 197 k~v~l~-~~n-~g~~~~---l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~----~-~~D~v~~s~~K~l~--gp~ 264 (359)
++++++ |+| ||...+ +++|.++|++||++||+|+++..-... +....++ . +.-+++.|.+|.++ |.+
T Consensus 173 ~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~-~~~~~sl~~~~~~~~~I~~~S~SK~~~~pGlR 251 (433)
T PRK06855 173 AGILLINPDNPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYN-GKKTVPLSEVIGDVPGIALKGISKELPWPGSR 251 (433)
T ss_pred eEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccC-CCCCCCHHHHcCcCCeEEEecCccccCCCcce
Confidence 888777 888 996654 667888899999999999997532221 1111111 1 12388899999874 445
Q ss_pred ceEEEEe
Q 018231 265 GAMIFFR 271 (359)
Q Consensus 265 gG~l~~~ 271 (359)
.|++++.
T Consensus 252 iG~ii~p 258 (433)
T PRK06855 252 CGWIEVY 258 (433)
T ss_pred EEEEEEe
Confidence 5999984
No 154
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=99.76 E-value=4.4e-17 Score=154.82 Aligned_cols=192 Identities=16% Similarity=0.165 Sum_probs=129.9
Q ss_pred cCceeeCCCCC--CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-
Q 018231 47 KGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP- 123 (359)
Q Consensus 47 ~~i~l~~~~~~--~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~- 123 (359)
+.++|..++++ +|+.+++++.+.+.. . ..|+ . ....+ +|+.+++++++++++ |++|+|++
T Consensus 21 ~~i~l~~~~~~~~~p~~~~~a~~~~~~~-~-~~y~------~-~~~~~----lr~~ia~~~~~~~~~----i~it~Ga~~ 83 (356)
T PRK08056 21 QLLDFSANINPLGMPVSLKRAIIDNLDC-A-ERYP------D-VEYRH----LHQALARHHQVPASW----ILAGNGETE 83 (356)
T ss_pred hEEEeccccCCCCCCHHHHHHHHHHHHh-c-ccCc------C-ccHHH----HHHHHHHHhCcChhh----EEECCCHHH
Confidence 45888888875 688999999876653 2 1222 2 11333 557888889998764 99999999
Q ss_pred HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc-
Q 018231 124 SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG- 202 (359)
Q Consensus 124 a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~- 202 (359)
++..++.++ .+|| +++++ |.|..+...+...|.++..+++..+ +++.+| +++++.+++ ++|+++++
T Consensus 84 ~l~~~~~~l-~~g~-viv~~--------P~y~~~~~~~~~~g~~~~~v~~~~~-~~~~~~-~~~~~~~~~-~~k~v~l~~ 150 (356)
T PRK08056 84 SIFAVVSGL-KPRR-AMIVT--------PGFAEYRRALQQVGCEIRRYSLREA-DGWQLT-DAILEALTP-DLDCLFLCT 150 (356)
T ss_pred HHHHHHHHh-CCCC-EEEeC--------CCcHHHHHHHHHcCCeEEEEecccc-cCCCcc-HHHHHhccC-CCCEEEEeC
Confidence 777667765 7786 56666 4444444445566777766654222 345666 455556665 89999987
Q ss_pred CCC-CCChhh---HHHHHHHHHHcCCEEEEeccccccccccC------CCCCCCCCceEEEeCCCCcCCCC--CceEEEE
Q 018231 203 ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAG------VIPSPFEYADVVTTTTHKSLRGP--RGAMIFF 270 (359)
Q Consensus 203 ~~n-~g~~~~---l~~i~~la~~~~~~vivD~a~~~g~~~~~------~~~~~~~~~D~v~~s~~K~l~gp--~gG~l~~ 270 (359)
|+| ||...+ +++|+++|+++++++|+|+++.. ....+ +... ..++++.|++|+++.| +-|+++.
T Consensus 151 p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~-~~~~~~~~~~~~~~~---~~~i~~~S~SK~~~~~G~RiG~~v~ 226 (356)
T PRK08056 151 PNNPTGLLPERQLLQAIAERCKSLNIALILDEAFID-FIPDETGFIPQLADN---PHLWVLRSLTKFYAIPGLRLGYLVN 226 (356)
T ss_pred CcCCCCCCCCHHHHHHHHHHHHhcCCEEEEecchhc-cCCcchHHHHHhccC---CCEEEEEechhhccCcchhheeeec
Confidence 888 997766 77889999999999999999632 11111 1111 2578999999987433 3399988
Q ss_pred eC
Q 018231 271 RK 272 (359)
Q Consensus 271 ~~ 272 (359)
++
T Consensus 227 ~~ 228 (356)
T PRK08056 227 SD 228 (356)
T ss_pred CC
Confidence 54
No 155
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=99.76 E-value=1e-16 Score=154.73 Aligned_cols=205 Identities=17% Similarity=0.103 Sum_probs=137.1
Q ss_pred cCceeeCCCC------CCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcC-CCCCCCceeEEEC
Q 018231 47 KGLELIPSEN------FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFR-LDPEKWGVNVQSL 119 (359)
Q Consensus 47 ~~i~l~~~~~------~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g-~~~~~~~~~v~~t 119 (359)
+.++|..++. ++++.+.+++.+.+......+ |+...+..++++++.+++.+..+ ++++ +|++|
T Consensus 32 ~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~------Y~~~~g~~~lr~aia~~~~~~~~~~~~~----~i~~t 101 (401)
T TIGR01264 32 PMIKLSIGDPTVFGNLPTDPEVMQAMKDSLDSGKYNG------YAPTVGALSAREAIASYYHNPDGPIEAD----DVVLC 101 (401)
T ss_pred CeeecCCCCCCCcCCCCCCHHHHHHHHHHHhccCCCC------CCCCCCCHHHHHHHHHHHhhcCCCCCHH----HEEEC
Confidence 5588876553 468889999888766421112 23234456666555555544211 3444 49999
Q ss_pred CChH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcE
Q 018231 120 SGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKL 198 (359)
Q Consensus 120 sG~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~ 198 (359)
+|++ ++..++.+++++||+|+++++.|. .+...+...|..+..++++.+ +++.+|++.+++.+++ ++++
T Consensus 102 ~G~~~al~~~~~~l~~~gd~v~i~~P~y~--------~~~~~~~~~g~~v~~~~~~~~-~~~~~d~~~l~~~~~~-~~~~ 171 (401)
T TIGR01264 102 SGCSHAIEMCIAALANAGQNILVPRPGFP--------LYETLAESMGIEVKLYNLLPD-KSWEIDLKQLESLIDE-KTAA 171 (401)
T ss_pred cChHHHHHHHHHHhCCCCCEEEEeCCCCh--------hHHHHHHHcCCEEEEeecCCc-cCCCCCHHHHHHHhcc-CceE
Confidence 9999 888788999999999999985443 333344556766655554322 3578999999998876 7899
Q ss_pred EEEc-CCC-CCChh---hHHHHHHHHHHcCCEEEEeccccccccccCCCCCCC---CC--ceEEEeCCCCcCC--CCCce
Q 018231 199 IVAG-ASA-YARLY---DYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPF---EY--ADVVTTTTHKSLR--GPRGA 266 (359)
Q Consensus 199 v~l~-~~n-~g~~~---~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~---~~--~D~v~~s~~K~l~--gp~gG 266 (359)
++++ |+| ||... ++++|+++|+++|+++|+|+++..-... +....++ .. --+++.|++|.++ |.+-|
T Consensus 172 v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~-~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG 250 (401)
T TIGR01264 172 LIVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFS-GATFEPLASLSSTVPILSCGGLAKRWLVPGWRLG 250 (401)
T ss_pred EEEcCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccC-CcccccHHHcCCCCcEEEEccCcccCCCccceEE
Confidence 9887 888 88654 5788899999999999999997532211 1111111 11 1378899999753 33349
Q ss_pred EEEEeC
Q 018231 267 MIFFRK 272 (359)
Q Consensus 267 ~l~~~~ 272 (359)
++++.+
T Consensus 251 ~iv~~~ 256 (401)
T TIGR01264 251 WIIIHD 256 (401)
T ss_pred EEEecC
Confidence 999875
No 156
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=99.75 E-value=9.8e-18 Score=160.06 Aligned_cols=154 Identities=18% Similarity=0.168 Sum_probs=116.7
Q ss_pred HHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEeccc
Q 018231 97 CQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL 175 (359)
Q Consensus 97 ~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 175 (359)
+++.++++.|.+ .+++++|++ ++..++.+++++||+|+++.+.|++.+...... ....|.++..+
T Consensus 58 Le~~lA~leg~e------~ivvt~gg~~Ai~~~l~all~~Gd~Il~~~~~y~~~~~~~~~~----~~~~gi~v~~v---- 123 (388)
T PRK08861 58 LEQTLSELESGK------GAVVTNCGTSALNLWVSALLGPDDLIVAPHDCYGGTYRLFNTR----ANKGDFKVQFV---- 123 (388)
T ss_pred HHHHHHHHhCCC------eEEEECCHHHHHHHHHHHHcCCCCEEEEcCCchHHHHHHHHHH----HhcCCeEEEEE----
Confidence 348899999964 388888888 888788899999999999987777543322111 11123333223
Q ss_pred CCCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEE
Q 018231 176 NESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVT 253 (359)
Q Consensus 176 ~~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~ 253 (359)
+ ..|++++++++++ +|++|+++ |+| +|.+.|+++|.++|+++|+++|+|++++.+.....+ .. |+|+++
T Consensus 124 d----~~d~e~l~~~i~~-~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~vIvDea~~~~~~~~pl-~~---GaDivv 194 (388)
T PRK08861 124 D----QSDAAALDAALAK-KPKLILLETPSNPLVRVVDIAELCQKAKAVGALVAVDNTFLTPVLQKPL-EL---GADFVI 194 (388)
T ss_pred C----CCCHHHHHHhcCc-CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCccccccCCCc-cc---CCCEEE
Confidence 2 2489999999987 89999998 888 899999999999999999999999999876543222 12 599999
Q ss_pred eCCCCcCCCCC---ceEEEEeCC
Q 018231 254 TTTHKSLRGPR---GAMIFFRKG 273 (359)
Q Consensus 254 ~s~~K~l~gp~---gG~l~~~~~ 273 (359)
+|+||+++|+. ||+++++++
T Consensus 195 ~S~tK~l~G~~d~~gG~i~~~~~ 217 (388)
T PRK08861 195 HSTTKYINGHSDVIGGVLITKTK 217 (388)
T ss_pred eecceeccCCCcceeEEEEecHH
Confidence 99999999876 477777653
No 157
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=99.75 E-value=7.1e-17 Score=158.39 Aligned_cols=214 Identities=11% Similarity=0.090 Sum_probs=141.5
Q ss_pred cCceeeCCCCCCcHHHHHHHHhhhhcc--CC-CC---CCCCcccCCchhHHHHHHHHHHHHHHHcC----CCCCCCceeE
Q 018231 47 KGLELIPSENFTSVSVMQAVGSVMTNK--YS-EG---YPGARYYGGNEYIDMAESLCQKRALEAFR----LDPEKWGVNV 116 (359)
Q Consensus 47 ~~i~l~~~~~~~~~~v~~al~~~~~~~--~~-~g---~~~~~~~~~~~~~~~l~~~~~~~~a~~~g----~~~~~~~~~v 116 (359)
..|+|..+||+.+..+++...+...+. .. .+ ......|+...+..++++++.+++.+.+| ++++ +|
T Consensus 39 g~i~L~~~En~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~v~~~----~I 114 (468)
T PLN02450 39 GIIQMGLAENQLSFDLIESWLAKNPDAAGLKRNGQSIFRELALFQDYHGLPAFKNALAEFMSEIRGNKVTFDPN----KL 114 (468)
T ss_pred eeEEeehhHhHhhHHHHHHHHHhCchhhhcccccccchhhhhcCCCCCChHHHHHHHHHHHHHhhCCCCCcChH----He
Confidence 469999999987665554444332110 00 00 01112355556677888888888887766 4554 59
Q ss_pred EECCChH-HHHHHHHhhcCCCCeeeecCCCCCcccCcccccccccee-eeeeeeEEEecccCCCCCCCCHHHHHHHhhh-
Q 018231 117 QSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKIS-AVSIFFETMPYRLNESTGYIDYDQLEKSATL- 193 (359)
Q Consensus 117 ~~tsG~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~- 193 (359)
++|+|++ ++..++.++++|||.|++++|.|+++ ...+. ..|++++.+++..+ +++.+|++++++.+++
T Consensus 115 iit~Ga~~al~~l~~~l~~pGd~Vlv~~P~Y~~~--------~~~~~~~~g~~~v~v~~~~~-~~~~~~~~~le~~~~~~ 185 (468)
T PLN02450 115 VLTAGATSANETLMFCLAEPGDAFLLPTPYYPGF--------DRDLKWRTGVEIVPIHCSSS-NGFQITESALEEAYQQA 185 (468)
T ss_pred EEccChHHHHHHHHHHhCCCCCEEEECCCCCCch--------HHHHhhcCCcEEEEEecCCc-cCCcCCHHHHHHHHHHH
Confidence 9999999 88878899999999999999555443 22333 35665555543222 5678899999988764
Q ss_pred ----hCCcEEEEc-CCC-CCChhh---HHHHHHHHHHcCCEEEEeccccccccccC-C-------CCCC-----CCCceE
Q 018231 194 ----FRPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAG-V-------IPSP-----FEYADV 251 (359)
Q Consensus 194 ----~~~k~v~l~-~~n-~g~~~~---l~~i~~la~~~~~~vivD~a~~~g~~~~~-~-------~~~~-----~~~~D~ 251 (359)
.++|+++++ |+| ||...+ +++|.++|++|+++||+|++++.-..... . .... ...--+
T Consensus 186 ~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi 265 (468)
T PLN02450 186 QKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDSPGFVSVMEVLKDRKLENTDVSNRVH 265 (468)
T ss_pred HhcCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccccccCCCCcccHHHHhhhcccccCCCCCcEE
Confidence 268988888 888 996654 66788889999999999999753222110 0 0000 001247
Q ss_pred EEeCCCCcCC--CCCceEEEEeCC
Q 018231 252 VTTTTHKSLR--GPRGAMIFFRKG 273 (359)
Q Consensus 252 v~~s~~K~l~--gp~gG~l~~~~~ 273 (359)
++.|.+|.|+ |.+-|+++++++
T Consensus 266 ~l~S~SK~~~l~GlRiG~li~~~~ 289 (468)
T PLN02450 266 IVYSLSKDLGLPGFRVGAIYSNDE 289 (468)
T ss_pred EEEeccccCCCCCccEEEEEECCH
Confidence 8999999873 555599998763
No 158
>PRK09105 putative aminotransferase; Provisional
Probab=99.75 E-value=5.1e-17 Score=155.09 Aligned_cols=194 Identities=16% Similarity=0.090 Sum_probs=134.2
Q ss_pred cCceeeCCCCC--CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-
Q 018231 47 KGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP- 123 (359)
Q Consensus 47 ~~i~l~~~~~~--~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~- 123 (359)
+.++|+.++++ +|+.+++++.+.+.. . ..| +... ..+ +++.+++++|+++++ |++|+|++
T Consensus 44 ~~i~l~~~~~~~~~~~~~~~a~~~~~~~-~-~~Y------~~~~-~~~----Lr~aia~~~~v~~e~----I~it~Gs~~ 106 (370)
T PRK09105 44 GAVFLNANECPLGPSPAARDAAARSAAL-S-GRY------DLEL-EDD----LRTLFAAQEGLPADH----VMAYAGSSE 106 (370)
T ss_pred CcEEecCCCCCCCCCHHHHHHHHHHHHH-h-cCC------CCch-HHH----HHHHHHHHhCcChhh----EEEcCChHH
Confidence 45888888874 689999999887643 1 112 2212 333 557788889998764 99999999
Q ss_pred HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc-
Q 018231 124 SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG- 202 (359)
Q Consensus 124 a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~- 202 (359)
++..++.+++++||+|++++++|+.+ ...+...|.+++.++ .+ +++.+|++++++. .+ ++++++++
T Consensus 107 ai~~~~~~l~~~gd~Vli~~P~y~~~--------~~~~~~~g~~~~~v~--~~-~~~~~d~~~l~~~-~~-~~~~v~l~n 173 (370)
T PRK09105 107 PLNYAVLAFTSPTAGLVTADPTYEAG--------WRAADAQGAPVAKVP--LR-ADGAHDVKAMLAA-DP-NAGLIYICN 173 (370)
T ss_pred HHHHHHHHHcCCCCEEEEeCCChHHH--------HHHHHHcCCeEEEec--CC-CCCCCCHHHHHhc-CC-CCCEEEEeC
Confidence 88878899999999999999555433 334556677666565 44 4578999999876 44 78998887
Q ss_pred CCC-CCChhhHHHHHHHHHH--cCCEEEEeccccccccccCCCCCCC--CCce-EEEeCCCCcCC--CCCceEEEEeC
Q 018231 203 ASA-YARLYDYERIRKVCNK--QKAIMLADMAHISGLVAAGVIPSPF--EYAD-VVTTTTHKSLR--GPRGAMIFFRK 272 (359)
Q Consensus 203 ~~n-~g~~~~l~~i~~la~~--~~~~vivD~a~~~g~~~~~~~~~~~--~~~D-~v~~s~~K~l~--gp~gG~l~~~~ 272 (359)
|+| ||...+.+++.++++. +++++|+|+++.. ... ......+ ..-+ +++.|.+|+++ |.+-|+++.++
T Consensus 174 P~NPTG~~~~~~~l~~l~~~~~~~~~lIvDEaY~~-f~~-~~s~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~~~ 249 (370)
T PRK09105 174 PNNPTGTVTPRADIEWLLANKPAGSVLLVDEAYIH-FSD-APSVVDLVAQRKDLIVLRTFSKLYGMAGMRLGLAAARP 249 (370)
T ss_pred CCCCCCcCcCHHHHHHHHHhCCCCcEEEEECchHH-hcc-CcchHHHHhhCCCEEEEecccHhhcCCccceeeeecCH
Confidence 888 9988888887777653 4899999999842 111 0000000 0123 67789999874 33339999876
No 159
>PRK13392 5-aminolevulinate synthase; Provisional
Probab=99.75 E-value=4.7e-17 Score=157.53 Aligned_cols=224 Identities=20% Similarity=0.199 Sum_probs=144.1
Q ss_pred CcHHHHHHHHhhhhccCCCCCCCCc-ccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhhc--C
Q 018231 58 TSVSVMQAVGSVMTNKYSEGYPGAR-YYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALL--K 134 (359)
Q Consensus 58 ~~~~v~~al~~~~~~~~~~g~~~~~-~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al~--~ 134 (359)
.+|.+++++.+.+.. +..+..+.+ +++..+...+ +++.+++++|.+. .|+++||++++..++.++. .
T Consensus 61 ~~p~v~~a~~~~~~~-~~~~~~~s~~~~~~~~~~~~----Le~~la~~~g~~~-----~i~~~sG~~a~~~~i~~l~~~~ 130 (410)
T PRK13392 61 QHPDVIGAMVDALDR-YGAGAGGTRNISGTSHPHVL----LERELADLHGKES-----ALLFTSGYVSNDAALSTLGKLL 130 (410)
T ss_pred CCHHHHHHHHHHHHH-cCCCCchhhhcccChHHHHH----HHHHHHHHhCCCC-----EEEECcHHHHHHHHHHHHhcCC
Confidence 479999999988765 422222222 2222223334 4588999999643 5999999888777777664 4
Q ss_pred CCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhh---hhCCcEEEEc-CCC-CCCh
Q 018231 135 PHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSAT---LFRPKLIVAG-ASA-YARL 209 (359)
Q Consensus 135 ~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~---~~~~k~v~l~-~~n-~g~~ 209 (359)
+||.|++....|.+.+. .+...|.++..++ .+ |.+++++.+. ..++++|+++ ++| +|.+
T Consensus 131 ~g~~vi~~~~~h~s~~~--------~~~~~g~~~~~~~--~~------d~~~l~~~l~~~~~~~t~~v~i~~~~n~tG~~ 194 (410)
T PRK13392 131 PGCVILSDALNHASMIE--------GIRRSGAEKQVFR--HN------DLADLEEQLASVDPDRPKLIAFESVYSMDGDI 194 (410)
T ss_pred CCCEEEEehhhhHHHHH--------HHHHcCCeEEEEe--CC------CHHHHHHHHHhccCCCCEEEEEeCCCCCCccc
Confidence 89988877666665432 2233455443332 22 5555665553 1278888888 666 8999
Q ss_pred hhHHHHHHHHHHcCCEEEEecccccccccc-C--CC-CCCC-CCceEEEeCCCCcCCCCCceEEEEeCCcchhccCCcch
Q 018231 210 YDYERIRKVCNKQKAIMLADMAHISGLVAA-G--VI-PSPF-EYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEV 284 (359)
Q Consensus 210 ~~l~~i~~la~~~~~~vivD~a~~~g~~~~-~--~~-~~~~-~~~D~v~~s~~K~l~gp~gG~l~~~~~~~~~~~~g~~~ 284 (359)
.|+++|.++|+++|+++|+|++|+.|.+.. + .. ..+. ...|+++.|++|+|+++ ||+++.++
T Consensus 195 ~~l~~i~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~~div~~tlsK~~g~~-GG~~~~~~------------ 261 (410)
T PRK13392 195 APIEAICDLADRYNALTYVDEVHAVGLYGARGGGIAERDGLMDRIDMIQGTLAKAFGCL-GGYIAASA------------ 261 (410)
T ss_pred ccHHHHHHHHHHcCCEEEEECCccccCcCCCCCchhhhccCCCCCcEEEEEChHhhhcc-cchhhcCH------------
Confidence 999999999999999999999999776521 1 10 0111 13689999999998654 58887765
Q ss_pred hhhHHHhhccccCCCCC-CCCcHHHHHHHHHHHHHHhcc
Q 018231 285 FYDYEEKINQAVFPGLQ-GGPHNHTITGLAVALKQVCTL 322 (359)
Q Consensus 285 ~~~~~~~~~~~~~~~~~-gt~~~~~i~al~~Al~~~~~~ 322 (359)
++.+.+.....+..+ ++.+....+|+.+||+.+...
T Consensus 262 --~~~~~l~~~~~~~~~s~~~~~~~~~a~~aaL~~~~~~ 298 (410)
T PRK13392 262 --DLIDFVRSFAPGFIFTTALPPAVAAGATAAIRHLKTS 298 (410)
T ss_pred --HHHHHHHHhCcchhccCcCCHHHHHHHHHHHHHHhcC
Confidence 444433332222222 334446677788889876653
No 160
>PRK06767 methionine gamma-lyase; Provisional
Probab=99.75 E-value=9.6e-18 Score=160.81 Aligned_cols=155 Identities=14% Similarity=0.101 Sum_probs=116.0
Q ss_pred HHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccC
Q 018231 97 CQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLN 176 (359)
Q Consensus 97 ~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 176 (359)
+++.+++++|.+. .++++||+.++..++.++++|||+|+++.+.|++.+.... ......|..+..+
T Consensus 66 Le~~lA~l~G~~~-----al~~~sG~~Ai~~~l~al~~~Gd~Vv~~~~~y~~~~~~~~----~~~~~~gi~~~~~----- 131 (386)
T PRK06767 66 FEERMAVLEGGEE-----ALAFGSGMAAISATLIGFLKAGDHIICSNGLYGCTYGFLE----VLEEKFMITHSFC----- 131 (386)
T ss_pred HHHHHHHHhCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHH----HHHhhcCeEEEEe-----
Confidence 3488999999754 4888888888777888999999999999877765543211 1111123222222
Q ss_pred CCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEe
Q 018231 177 ESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTT 254 (359)
Q Consensus 177 ~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~ 254 (359)
...|++++++++++ +|++|+++ ++| +|.+.|+++|.++|+++|+++|+|++++.+....++ .. ++|++++
T Consensus 132 ---~~~d~~~l~~~i~~-~tklV~lesp~NptG~v~dl~~I~~la~~~g~~vivD~a~a~~~~~~pl-~~---g~Div~~ 203 (386)
T PRK06767 132 ---DMETEADIENKIRP-NTKLIFVETPINPTMKLIDLKQVIRVAKRNGLLVIVDNTFCSPYLQRPL-EL---GCDAVVH 203 (386)
T ss_pred ---CCCCHHHHHHhhCc-CceEEEEeCCCCCCceecCHHHHHHHHHHcCCEEEEECCCcccccCCch-hc---CCcEEEe
Confidence 12388999999987 89999998 888 899999999999999999999999998765443222 12 5899999
Q ss_pred CCCCcCCCCC---ceEEEEeCC
Q 018231 255 TTHKSLRGPR---GAMIFFRKG 273 (359)
Q Consensus 255 s~~K~l~gp~---gG~l~~~~~ 273 (359)
|++|+++|+. ||+++++++
T Consensus 204 S~sK~l~g~g~~~gG~v~~~~~ 225 (386)
T PRK06767 204 SATKYIGGHGDVVAGVTICKTR 225 (386)
T ss_pred cCcceecCCCCceeEEEEeChH
Confidence 9999998765 588888773
No 161
>PRK02731 histidinol-phosphate aminotransferase; Validated
Probab=99.75 E-value=4.6e-17 Score=155.32 Aligned_cols=196 Identities=18% Similarity=0.116 Sum_probs=136.7
Q ss_pred hcCceeeCCCCC--CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH
Q 018231 46 WKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP 123 (359)
Q Consensus 46 ~~~i~l~~~~~~--~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~ 123 (359)
.+.++|..++++ +++.+++++.+.+.. + ..|+.. .+ .+ +++.+++++|++++ +|++|+|++
T Consensus 32 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~-~-~~y~~~------~~-~~----lr~~ia~~~~~~~~----~i~~t~G~~ 94 (367)
T PRK02731 32 ADIIKLASNENPLGPSPKAIEAIRAAADE-L-HRYPDG------SG-FE----LKAALAEKFGVDPE----RIILGNGSD 94 (367)
T ss_pred CceEEecCCCCCCCCCHHHHHHHHHHHHh-h-cCCCCC------cH-HH----HHHHHHHHhCcCHH----HEEEcCCHH
Confidence 356888887764 578888998887653 2 123321 22 23 55788888898775 499999999
Q ss_pred -HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc
Q 018231 124 -SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG 202 (359)
Q Consensus 124 -a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~ 202 (359)
++..++.+++++||+|+++++.|..+ ...+...|.++..++ . +++.+|++++++.+++ ++++|+++
T Consensus 95 ~~l~~~~~~l~~~gd~vl~~~p~y~~~--------~~~~~~~g~~~~~~~--~--~~~~~~~~~l~~~~~~-~~~~v~l~ 161 (367)
T PRK02731 95 EILELLARAYLGPGDEVIYSEHGFAVY--------PIAAQAVGAKPVEVP--A--KDYGHDLDAMLAAVTP-RTRLVFIA 161 (367)
T ss_pred HHHHHHHHHhcCCCCEEEEecCCHHHH--------HHHHHHcCCeEEEec--c--cCCCCCHHHHHHHhCC-CCcEEEEe
Confidence 66667788899999999998655322 212334566665554 3 3578899999999986 89999888
Q ss_pred -CCC-CCChhhHHHHHHHHHHc--CCEEEEeccccccccccCCCCCCC-----CCceEEEeCCCCcCC--CCCceEEEEe
Q 018231 203 -ASA-YARLYDYERIRKVCNKQ--KAIMLADMAHISGLVAAGVIPSPF-----EYADVVTTTTHKSLR--GPRGAMIFFR 271 (359)
Q Consensus 203 -~~n-~g~~~~l~~i~~la~~~--~~~vivD~a~~~g~~~~~~~~~~~-----~~~D~v~~s~~K~l~--gp~gG~l~~~ 271 (359)
++| +|...+.+++.++++.. |+++|+|+++...... +....++ ..-.+++.|.+|.++ |.+-|+++++
T Consensus 162 ~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~y~~~~~~-~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~~ 240 (367)
T PRK02731 162 NPNNPTGTYLPAEEVERFLAGVPPDVLVVLDEAYAEYVRR-KDYEDGLELVAKFPNVVVTRTFSKAYGLAGLRVGYGIAP 240 (367)
T ss_pred CCCCCCCcCCCHHHHHHHHHhCCCCcEEEEECcHHHhccC-cCcccHHHHHhhcCCEEEEeeehHhhcCcccceeeeeCC
Confidence 888 99999999999988874 8999999997543321 1101010 013477889999763 3334999987
Q ss_pred C
Q 018231 272 K 272 (359)
Q Consensus 272 ~ 272 (359)
+
T Consensus 241 ~ 241 (367)
T PRK02731 241 P 241 (367)
T ss_pred H
Confidence 7
No 162
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=99.75 E-value=1.1e-17 Score=160.29 Aligned_cols=155 Identities=19% Similarity=0.190 Sum_probs=118.3
Q ss_pred HHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccC
Q 018231 97 CQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLN 176 (359)
Q Consensus 97 ~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 176 (359)
+++.+++++|.+. .++++||+.++.+++.+++++||+|+++++.|++.+..... .....|.++..++ .
T Consensus 66 Le~~lA~~~g~~~-----~i~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~t~~~~~~----~~~~~gi~~~~~d--~- 133 (388)
T PRK07811 66 LEEQLAALEGGAY-----GRAFSSGMAATDCLLRAVLRPGDHIVIPNDAYGGTFRLIDK----VFTRWGVEYTPVD--L- 133 (388)
T ss_pred HHHHHHHHhCCCc-----eEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchHHHHHHHH----hCcCCCeEEEEeC--C-
Confidence 4488999999876 47888887788889999999999999999888765432211 1112243333332 2
Q ss_pred CCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEe
Q 018231 177 ESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTT 254 (359)
Q Consensus 177 ~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~ 254 (359)
.|++++++.+++ +||+|+++ ++| +|...++++|.++|+++|+++|+|++++.+...... .. ++|++++
T Consensus 134 -----~d~e~l~~~i~~-~tklV~ie~p~NPtg~~~dl~~I~~la~~~gi~lIvD~a~a~~~~~~p~-~~---gaDivv~ 203 (388)
T PRK07811 134 -----SDLDAVRAAITP-RTKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNTFASPYLQQPL-AL---GADVVVH 203 (388)
T ss_pred -----CCHHHHHHhcCc-CCeEEEEECCCCCcceecCHHHHHHHHHHcCCEEEEECCCCccccCCch-hh---CCcEEEe
Confidence 389999999987 89999997 888 889999999999999999999999998776543221 11 5899999
Q ss_pred CCCCcCCCCC---ceEEEEeCC
Q 018231 255 TTHKSLRGPR---GAMIFFRKG 273 (359)
Q Consensus 255 s~~K~l~gp~---gG~l~~~~~ 273 (359)
|++|+++|+. ||+++++++
T Consensus 204 S~sK~l~g~~~~~gG~vv~~~~ 225 (388)
T PRK07811 204 STTKYIGGHSDVVGGALVTNDE 225 (388)
T ss_pred cCceeecCCCCcEEEEEEECCH
Confidence 9999998875 588888764
No 163
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=99.75 E-value=7.1e-17 Score=155.35 Aligned_cols=173 Identities=17% Similarity=0.134 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH--HHHHHHHhhc--C-CCCeeeecCCCCCcccCccccccccceeee
Q 018231 90 IDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP--SNFQVYTALL--K-PHDRIMALDLPHGGHLSHGYQTDTKKISAV 164 (359)
Q Consensus 90 ~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~--a~~~~~~al~--~-~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~ 164 (359)
...+...+.+++++++|++... ..++++|+| ++.+++.++- . +||+|+++..+|.++.. .+.+.
T Consensus 103 ~~~l~~~~e~~~~~~~G~~~~~---~a~~v~~~Tg~al~laL~alr~~~~~gd~VI~p~~th~S~~k--------Ai~~~ 171 (444)
T TIGR03531 103 LYKLTNKLVKDFLKLLGLRSIK---SAFVVPLATGMSLSLCLSALRHKRPKAKYVIWPRIDQKSCIK--------AISTA 171 (444)
T ss_pred HHHHHHHHHHHHHHHcCCCCCC---EEEEECCHHHHHHHHHHHHcCCcCCCCCEEEEECcChHHHHH--------HHHHc
Confidence 4556666778999999997322 255555555 5555555552 2 69999999977776643 55677
Q ss_pred eeeeEEEecccCCCCCCCCHHHHHHHhhhh--CCcEEEEc-CCCC--CChhhHHHHHHHHHHcCCEEEEecccccccccc
Q 018231 165 SIFFETMPYRLNESTGYIDYDQLEKSATLF--RPKLIVAG-ASAY--ARLYDYERIRKVCNKQKAIMLADMAHISGLVAA 239 (359)
Q Consensus 165 g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~--~~k~v~l~-~~n~--g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~ 239 (359)
|++++.++...+++++.+|+++|+++|++. ++.++++. ++.+ +...|+++|+++|++||+++|+|+||+.+....
T Consensus 172 G~~pv~Vd~~~d~~~~~iD~e~Le~aIt~~~~kai~~Vv~Tp~t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~~~~ 251 (444)
T TIGR03531 172 GFEPRVIETVLDGDELTTDVEDIERAIEEIGPDNILCVLSTTSCFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQSNKY 251 (444)
T ss_pred CCeEEEeeeeecCcCCCcCHHHHHHHHHhccCCCEEEEEEcCCcCCCcchhCHHHHHHHHHHcCCEEEEECcCcCcChhh
Confidence 877777764345567899999999999862 33455555 4433 378899999999999999999999998655332
Q ss_pred C-CCCCCC--CCceEEEeCCCCcCCCCCc-eEEEEeCC
Q 018231 240 G-VIPSPF--EYADVVTTTTHKSLRGPRG-AMIFFRKG 273 (359)
Q Consensus 240 ~-~~~~~~--~~~D~v~~s~~K~l~gp~g-G~l~~~~~ 273 (359)
. ....++ +.+|++++|+||++..|.+ |+++++++
T Consensus 252 ~~~~~~g~~~Grad~vv~s~hK~l~~pg~Gg~I~~~d~ 289 (444)
T TIGR03531 252 MELINKAIKVGRVDAVVSSTDKNFMVPVGGAIIYSFDE 289 (444)
T ss_pred hhhhhccccccCCCeEEEeCccCCCCCCCEEEEEECCH
Confidence 1 111111 1379999999999987765 66668675
No 164
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=99.75 E-value=1e-17 Score=160.07 Aligned_cols=154 Identities=19% Similarity=0.209 Sum_probs=115.9
Q ss_pred HHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccC
Q 018231 97 CQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLN 176 (359)
Q Consensus 97 ~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 176 (359)
+++.+++++|.+. .+++++|++++.+++. ++++||+|+++++.|++....+.. .+...|++++.++ ..
T Consensus 52 le~~la~l~g~~~-----~l~~~sG~~al~~~l~-ll~~Gd~Vl~~~~~y~~~~~~~~~----~~~~~G~~v~~vd--~~ 119 (378)
T TIGR01329 52 LESLLAKLDKADR-----AFAFSSGMAALDVITR-LLNNGDEIIAGDDLYGGTDRLLTQ----VVPRSGVVVVHVD--TT 119 (378)
T ss_pred HHHHHHHHhCCCc-----EEEECCHHHHHHHHHH-HhCCCCEEEEcCCCchHHHHHHHH----HHHHcCcEEEEeC--CC
Confidence 5588999999853 4777777776664554 789999999998777655332211 1223465554443 22
Q ss_pred CCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEe
Q 018231 177 ESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTT 254 (359)
Q Consensus 177 ~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~ 254 (359)
|++++++++++ ++|+|+++ ++| +|.+.|+++|+++|+++|+++|+|++|+.+.....+ .. ++|++++
T Consensus 120 ------d~~~le~~i~~-~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a~~~~~~~~~l-~~---g~Di~v~ 188 (378)
T TIGR01329 120 ------DLDKVKAALGP-KTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMMSPLLCNPL-EL---GADIVYH 188 (378)
T ss_pred ------CHHHHHHhcCc-CceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcccccCChh-hc---CCcEEEE
Confidence 89999999987 89999998 888 899999999999999999999999998766543222 22 4899999
Q ss_pred CCCCcCCCCC---ceEEEEeCC
Q 018231 255 TTHKSLRGPR---GAMIFFRKG 273 (359)
Q Consensus 255 s~~K~l~gp~---gG~l~~~~~ 273 (359)
|++|+++|+. +|+++++++
T Consensus 189 S~tK~l~G~~~~~~G~v~~~~~ 210 (378)
T TIGR01329 189 SATKFLAGHSDVMAGVLAVKGE 210 (378)
T ss_pred ecceeccCCccceeEEEEeCcH
Confidence 9999998875 488888664
No 165
>PRK00950 histidinol-phosphate aminotransferase; Validated
Probab=99.75 E-value=2.3e-17 Score=156.94 Aligned_cols=196 Identities=16% Similarity=0.100 Sum_probs=136.5
Q ss_pred cCceeeCCCCC--CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEE-CCChH
Q 018231 47 KGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQS-LSGSP 123 (359)
Q Consensus 47 ~~i~l~~~~~~--~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~-tsG~~ 123 (359)
+.|+|..++++ +++.+++++.+.+.... +|+. ... .+ +++.+++++|+++++ |++ |+|++
T Consensus 35 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~--~y~~------~~~-~~----lr~~ia~~~~~~~~~----i~~~~~Ga~ 97 (361)
T PRK00950 35 SIIKLGSNENPLGPSPKAVEAIEKELSKIH--RYPE------PDA-PE----LREALSKYTGVPVEN----IIVGGDGMD 97 (361)
T ss_pred ceEEccCCCCCCCCCHHHHHHHHHHHHhhc--CCCC------CCH-HH----HHHHHHHHhCCCHHH----EEEeCCCHH
Confidence 45889887764 57888888887765421 2322 122 33 557888889997754 888 78988
Q ss_pred -HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc
Q 018231 124 -SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG 202 (359)
Q Consensus 124 -a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~ 202 (359)
++..++.++++|||+|+++++.|+ .+...+...|.++..++ .+ +++.+|++++++.+++ ++++++++
T Consensus 98 ~~i~~~~~~~~~~gd~vlv~~p~y~--------~~~~~~~~~g~~~~~~~--~~-~~~~~~~~~l~~~~~~-~~~~v~~~ 165 (361)
T PRK00950 98 EVIDTLMRTFIDPGDEVIIPTPTFS--------YYEISAKAHGAKPVYAK--RE-EDFSLDVDSVLNAITE-KTKVIFLC 165 (361)
T ss_pred HHHHHHHHHhcCCCCEEEEcCCChH--------HHHHHHHHcCCEEEEee--cC-CCCCcCHHHHHHHhcc-CCCEEEEe
Confidence 666677888899999999985443 22223445566665554 33 4578999999998876 89998887
Q ss_pred -CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCC-CceEEEeCCCCcCCCC--CceEEEEeC
Q 018231 203 -ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE-YADVVTTTTHKSLRGP--RGAMIFFRK 272 (359)
Q Consensus 203 -~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~-~~D~v~~s~~K~l~gp--~gG~l~~~~ 272 (359)
++| +|...+.+++.++|+++|+++|+|++|.... .......... ..-+++.|++|.++.| +-|++++++
T Consensus 166 ~p~nptG~~~~~~~l~~l~~~~~~~li~De~y~~~~-~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~~~~~ 239 (361)
T PRK00950 166 TPNNPTGNLIPEEDIRKILESTDALVFVDEAYVEFA-EYDYTPLALEYDNLIIGRTFSKVFGLAGLRIGYGFVPE 239 (361)
T ss_pred CCCCCCCCCcCHHHHHHHHHHCCcEEEEECchhhhC-ccchHHHHHhcCCEEEEEeehHhhcCchhhcchhcCCH
Confidence 888 9999999999999999999999999985321 1111000000 1237788999987533 239988876
No 166
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=99.75 E-value=1.2e-17 Score=160.46 Aligned_cols=155 Identities=17% Similarity=0.169 Sum_probs=116.0
Q ss_pred HHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccC
Q 018231 97 CQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLN 176 (359)
Q Consensus 97 ~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 176 (359)
+++.+++++|+++ .+++.+|++++..++.++++|||+|+++++.|+++...... .....|.++..+ +
T Consensus 70 Le~~lA~l~G~~~-----~~~~~sG~~Ai~~~l~~~l~~Gd~Vl~~~~~y~~~~~~~~~----~~~~~G~~v~~v----d 136 (398)
T PRK07504 70 FEKRMCALEGAED-----ARATASGMAAVTAAILCQVKAGDHVVAARALFGSCRYVVET----LLPRYGIESTLV----D 136 (398)
T ss_pred HHHHHHHHhCCCe-----eeEecCHHHHHHHHHHHHhCCCCEEEEcCCchhHHHHHHHH----HHhhcCeEEEEE----C
Confidence 4488999999976 25677777777767788899999999999777765322110 112235444333 2
Q ss_pred CCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEe
Q 018231 177 ESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTT 254 (359)
Q Consensus 177 ~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~ 254 (359)
.+|++++++++++ +||+|+++ |+| +|.+.|+++|.++|+++|+++|+|++|+.+...... .. ++|++++
T Consensus 137 ----~~d~e~l~~ai~~-~tklV~lesp~NptG~v~dl~~I~~la~~~gi~lvvD~a~a~~~~~~~~-~~---gaDivv~ 207 (398)
T PRK07504 137 ----GLDLDNWEKAVRP-NTKVFFLESPTNPTLEVIDIAAVAKIANQAGAKLVVDNVFATPLFQKPL-EL---GAHIVVY 207 (398)
T ss_pred ----CCCHHHHHHhcCc-CceEEEEECCCCCCcEecCHHHHHHHHHHcCCEEEEECCccccccCCch-hh---CCCEEEe
Confidence 2589999999987 89999998 888 899999999999999999999999999876543211 12 5899999
Q ss_pred CCCCcCCCCC---ceEEEEeCC
Q 018231 255 TTHKSLRGPR---GAMIFFRKG 273 (359)
Q Consensus 255 s~~K~l~gp~---gG~l~~~~~ 273 (359)
|++|+++|+. ||+++.+++
T Consensus 208 S~sK~l~g~g~~~GG~vv~~~~ 229 (398)
T PRK07504 208 SATKHIDGQGRCLGGVVLSDKA 229 (398)
T ss_pred eccccccCCccceEEEEEeCcH
Confidence 9999997754 467776663
No 167
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=99.75 E-value=2.6e-17 Score=156.84 Aligned_cols=158 Identities=11% Similarity=0.020 Sum_probs=114.5
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeee
Q 018231 88 EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSI 166 (359)
Q Consensus 88 ~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~ 166 (359)
.....+| +.++++.|.+. +++++|++ |+..++.++++|||+|+++++.|++... +........|.
T Consensus 50 Pt~~~lE----~~lA~l~g~~~------~~~~~sG~~Ai~~al~all~~GD~Vl~~~~~y~~t~~----~~~~~~~~~gi 115 (377)
T TIGR01324 50 LTHFALQ----DAMCELEGGAG------CYLYPSGLAAVTNSILAFVKAGDHVLMVDSAYEPTRY----FCDIVLKRMGV 115 (377)
T ss_pred ccHHHHH----HHHHHHhCCCc------EEEECcHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHH----HHHHHHHhcCc
Confidence 3345555 78889999764 45555555 8888999999999999999876654321 10001122344
Q ss_pred eeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCC
Q 018231 167 FFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPS 244 (359)
Q Consensus 167 ~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~ 244 (359)
++..+ +.. +.+++++.+++ +||+|+++ ++| +|.+.|+++|+++|+++|+++++|++|+.|...... ..
T Consensus 116 ~v~~~--d~~------~~e~l~~~i~~-~tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD~t~a~g~~~~pl-~~ 185 (377)
T TIGR01324 116 DITYY--DPL------IGEDIATLIQP-NTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNTWAAGLLFKPL-EH 185 (377)
T ss_pred EEEEE--CCC------CHHHHHHhcCC-CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccccccCcc-cc
Confidence 44333 111 23789998887 89999998 888 889999999999999999999999999988764322 22
Q ss_pred CCCCceEEEeCCCCcCCCCCc---eEEEEeC
Q 018231 245 PFEYADVVTTTTHKSLRGPRG---AMIFFRK 272 (359)
Q Consensus 245 ~~~~~D~v~~s~~K~l~gp~g---G~l~~~~ 272 (359)
++|++++|++|+++|+.+ |+++.++
T Consensus 186 ---gaDivv~S~tK~l~G~~d~~gG~v~~~~ 213 (377)
T TIGR01324 186 ---GVDISIQAGTKYLVGHSDIMIGTVVANA 213 (377)
T ss_pred ---CceEEEecCceeccCCCCceEEEEEeCH
Confidence 499999999999988754 7777765
No 168
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=99.75 E-value=1.2e-16 Score=150.66 Aligned_cols=207 Identities=15% Similarity=0.136 Sum_probs=136.9
Q ss_pred CchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeee
Q 018231 86 GNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAV 164 (359)
Q Consensus 86 ~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~ 164 (359)
......++++.+++.+...++..... .++++++|++ ++..++.++.++||+|+++.+.|.++.. .+...
T Consensus 34 ~~~~~~~l~~~l~~~l~~~~~~~~~~--~~~~~~~~~t~a~~~~~~~~~~~g~~vl~~~~~~~~~~~--------~~~~~ 103 (350)
T cd00609 34 PDPGLPELREAIAEWLGRRGGVDVPP--EEIVVTNGAQEALSLLLRALLNPGDEVLVPDPTYPGYEA--------AARLA 103 (350)
T ss_pred CCCCcHHHHHHHHHHHHHHhCCCCCc--ceEEEecCcHHHHHHHHHHhCCCCCEEEEcCCCchhHHH--------HHHHC
Confidence 33556777777777777776632111 2588999988 8887888889999999999977776543 33344
Q ss_pred eeeeEEEecccCCCCCCCCH--HHHHHHhhhhCCcEEEEc-CCC-CCChhhHH---HHHHHHHHcCCEEEEecccccccc
Q 018231 165 SIFFETMPYRLNESTGYIDY--DQLEKSATLFRPKLIVAG-ASA-YARLYDYE---RIRKVCNKQKAIMLADMAHISGLV 237 (359)
Q Consensus 165 g~~~~~v~~~~~~~~~~~d~--e~l~~~i~~~~~k~v~l~-~~n-~g~~~~l~---~i~~la~~~~~~vivD~a~~~g~~ 237 (359)
+..++.++ .+ +.+..+. +.++...++ ++++|+++ ++| +|...|++ +|.++|+++|+++|+|++|+.+..
T Consensus 104 ~~~~~~i~--~~-~~~~~~~~~~~~~~~~~~-~~~~v~i~~~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~ 179 (350)
T cd00609 104 GAEVVPVP--LD-EEGGFLLDLELLEAAKTP-KTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVY 179 (350)
T ss_pred CCEEEEEe--cc-cccCCccCHHHHHhhcCc-cceEEEEECCCCCCCcccCHHHHHHHHHHHHhCCeEEEEecchhhcee
Confidence 55565565 44 3333333 666666665 88999887 666 78777655 555899999999999999976543
Q ss_pred ccCCC----CCCCCCceEEEeCCCCcCC--CCCceEEEEeCCcchhccCCcchhhhHHHhhccccCCCCCCCCcHHHHHH
Q 018231 238 AAGVI----PSPFEYADVVTTTTHKSLR--GPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITG 311 (359)
Q Consensus 238 ~~~~~----~~~~~~~D~v~~s~~K~l~--gp~gG~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~a 311 (359)
..... .....+.|+++.|++|+++ |++.|+++++++ ++.+.+.... ....++++.....+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~s~~K~~~~~g~~~G~i~~~~~-------------~~~~~~~~~~-~~~~~~~~~~~~~~ 245 (350)
T cd00609 180 DGEPPPALALLDAYERVIVLRSFSKTFGLPGLRIGYLIAPPE-------------ELLERLKKLL-PYTTSGPSTLSQAA 245 (350)
T ss_pred CCcccccccCcCccCcEEEEeecccccCCcccceEEEecCHH-------------HHHHHHHHHH-HhcccCCChHHHHH
Confidence 22111 1111247999999999986 333499998873 3334333221 11235777788888
Q ss_pred HHHHHHHHh
Q 018231 312 LAVALKQVC 320 (359)
Q Consensus 312 l~~Al~~~~ 320 (359)
+..+++...
T Consensus 246 ~~~~l~~~~ 254 (350)
T cd00609 246 AAAALDDGE 254 (350)
T ss_pred HHHHHhCcH
Confidence 888777653
No 169
>PRK06460 hypothetical protein; Provisional
Probab=99.75 E-value=2.3e-17 Score=157.55 Aligned_cols=154 Identities=19% Similarity=0.217 Sum_probs=112.2
Q ss_pred HHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccC
Q 018231 97 CQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLN 176 (359)
Q Consensus 97 ~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 176 (359)
+++.+++++|++. .+++++|+.++..++.++++|||+|+++.+.++ +.|..+...+...|+++..++ .+
T Consensus 50 L~~~lA~l~g~~~-----~v~~~sG~~ai~~~l~al~~~Gd~Vl~~~~~~~----~ty~~~~~~~~~~G~~v~~~~--~~ 118 (376)
T PRK06460 50 LTKKIVELENAEM-----GVAFSSGMGAISTTALALLKPGNSVLVHRDMFG----RSYRFFTDYLKNWGVNVDASN--PG 118 (376)
T ss_pred HHHHHHHHhCCCc-----EEEeCCHHHHHHHHHHHHhCCCCEEEEecCCcC----cHHHHHHHHHHhhCcEEEEEC--CC
Confidence 4588999999865 488888877877788999999999999875554 333333333445566554443 32
Q ss_pred CCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEe
Q 018231 177 ESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTT 254 (359)
Q Consensus 177 ~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~ 254 (359)
+.+.+++.+++ ++|+|+++ ++| +|.+.|+++|.++|+++|+++|+|++++.+...... .. ++|+++.
T Consensus 119 ------~~~~l~~~~~~-~tklV~l~sp~NPtG~v~d~~~I~~la~~~g~~vivDea~~~~~~~~~l-~~---~~divv~ 187 (376)
T PRK06460 119 ------SDNIIEKAKSK-RYDVVFVENITNPLLRVVDITELSKVCKENGSILIVDATFSTPINQKPL-EL---GADIVVH 187 (376)
T ss_pred ------CHHHHHHhcCC-CceEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcCccccCChh-hc---CCCEEEe
Confidence 23445555555 89999998 888 899999999999999999999999998654211111 11 4899999
Q ss_pred CCCCcCCCCC---ceEEEEeC
Q 018231 255 TTHKSLRGPR---GAMIFFRK 272 (359)
Q Consensus 255 s~~K~l~gp~---gG~l~~~~ 272 (359)
|++|+++|+. +|+++.++
T Consensus 188 S~sK~l~G~~~~~~G~~~~~~ 208 (376)
T PRK06460 188 SASKFLAGHNDVIAGLAAGYG 208 (376)
T ss_pred ecceeccCCCCceEEEEecCH
Confidence 9999998765 58777765
No 170
>PRK05968 hypothetical protein; Provisional
Probab=99.75 E-value=2.1e-17 Score=158.52 Aligned_cols=153 Identities=14% Similarity=0.119 Sum_probs=115.5
Q ss_pred HHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccC
Q 018231 97 CQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLN 176 (359)
Q Consensus 97 ~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 176 (359)
+++.+++++|.+. .++++||+.++..++.++++|||+|+++.+.|++.+..+. ..+...|++++.++ .+
T Consensus 68 le~~lA~l~g~~~-----av~~~sG~~Ai~~al~al~~~Gd~Vl~~~~~y~~t~~~~~----~~~~~~G~~v~~vd--~~ 136 (389)
T PRK05968 68 FEEMLAKLEGAED-----ARGFASGMAAISSTVLSFVEPGDRIVAVRHVYPDAFRLFE----TILKRMGVEVDYVD--GR 136 (389)
T ss_pred HHHHHHHHhCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHH----HHHHHcCceEEEeC--CC
Confidence 4488999999875 4888888888887888899999999999987776543221 12233465554442 22
Q ss_pred CCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEe
Q 018231 177 ESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTT 254 (359)
Q Consensus 177 ~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~ 254 (359)
|++++++.+ + +||+|+++ ++| ++...|+++|.++|+++|+++|+|++|+.+...... .. ++|++++
T Consensus 137 ------d~~~l~~~i-~-~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~a~a~~~~~~p~-~~---g~Divv~ 204 (389)
T PRK05968 137 ------DEEAVAKAL-P-GAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNSWASPVFQRPI-TL---GVDLVIH 204 (389)
T ss_pred ------CHHHHHHhc-c-cCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcchhccCch-hc---CCcEEEe
Confidence 889999888 4 78999987 777 678899999999999999999999999776543221 12 4899999
Q ss_pred CCCCcCCCCC---ceEEEEeC
Q 018231 255 TTHKSLRGPR---GAMIFFRK 272 (359)
Q Consensus 255 s~~K~l~gp~---gG~l~~~~ 272 (359)
|++|+++||. ||+++.++
T Consensus 205 S~tK~l~g~~~~~gG~i~~~~ 225 (389)
T PRK05968 205 SASKYLGGHSDTVAGVVAGSK 225 (389)
T ss_pred eccccccCCCCeEEEEEEECH
Confidence 9999998864 47777655
No 171
>PRK06234 methionine gamma-lyase; Provisional
Probab=99.75 E-value=2e-17 Score=159.25 Aligned_cols=159 Identities=13% Similarity=0.149 Sum_probs=119.1
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeee
Q 018231 88 EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIF 167 (359)
Q Consensus 88 ~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~ 167 (359)
....+++ +.+++++|.+. .+++++|+.++..++.++++|||+|+++++.|++.+... ...+...|++
T Consensus 64 p~~~~Le----~~iA~~~g~~~-----~l~~~sG~~Ai~~al~~ll~~Gd~Vl~~~~~y~~~~~~~----~~~~~~~G~~ 130 (400)
T PRK06234 64 PTSTEVE----NKLALLEGGEA-----AVVAASGMGAISSSLWSALKAGDHVVASDTLYGCTFALL----NHGLTRYGVE 130 (400)
T ss_pred ccHHHHH----HHHHHHhCCCc-----EEEEcCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHH----HHHHhhCCeE
Confidence 3345555 78889999753 366666666887788899999999999997776543321 1123345655
Q ss_pred eEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhhHHHHHHHHHHc--CCEEEEeccccccccccCCCC
Q 018231 168 FETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQ--KAIMLADMAHISGLVAAGVIP 243 (359)
Q Consensus 168 ~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~l~~i~~la~~~--~~~vivD~a~~~g~~~~~~~~ 243 (359)
++.++ .+ |++++++.+++ +|++|+++ |+| +|.+.|+++|.++|+++ |+++++|++++.+...... .
T Consensus 131 v~~vd--~~------d~e~l~~~i~~-~tklI~iesP~NPtG~v~dl~~I~~la~~~~~~i~livDea~~~~~~~~~l-~ 200 (400)
T PRK06234 131 VTFVD--TS------NLEEVRNALKA-NTKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVDNTFCTPYIQRPL-Q 200 (400)
T ss_pred EEEEC--CC------CHHHHHHHhcc-CCeEEEEECCCCCCCCcCCHHHHHHHHHhcCCCCEEEEECCCCchhcCCch-h
Confidence 54442 22 89999999987 89999998 888 89999999999999997 9999999998776543211 1
Q ss_pred CCCCCceEEEeCCCCcCCCCC---ceEEEEeC
Q 018231 244 SPFEYADVVTTTTHKSLRGPR---GAMIFFRK 272 (359)
Q Consensus 244 ~~~~~~D~v~~s~~K~l~gp~---gG~l~~~~ 272 (359)
. ++|++++|++|+++|+. ||++++++
T Consensus 201 ~---g~Divv~S~sK~l~g~g~~~gG~v~~~~ 229 (400)
T PRK06234 201 L---GADVVVHSATKYLNGHGDVIAGFVVGKE 229 (400)
T ss_pred h---CCcEEEeeccccccCCCCceeEEEEecH
Confidence 1 48999999999998765 48888877
No 172
>PRK08064 cystathionine beta-lyase; Provisional
Probab=99.75 E-value=1.4e-17 Score=159.65 Aligned_cols=154 Identities=16% Similarity=0.167 Sum_probs=118.8
Q ss_pred HHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccC
Q 018231 97 CQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLN 176 (359)
Q Consensus 97 ~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 176 (359)
+++.+++++|++. .++++||+.++.+++. ++++||+|+++++.|++.+..+.. .+...|++++.++ .+
T Consensus 59 le~~lA~l~g~~~-----~v~~~sG~~ai~~~l~-~l~~Gd~Vlv~~~~y~~~~~~~~~----~~~~~G~~v~~v~--~~ 126 (390)
T PRK08064 59 LEDIIAELEGGTK-----GFAFASGMAAISTAFL-LLSKGDHVLISEDVYGGTYRMITE----VLSRFGIEHTFVD--MT 126 (390)
T ss_pred HHHHHHHHhCCCC-----eEEECCHHHHHHHHHH-HhCCCCEEEEccCccchHHHHHHH----HHHHcCCEEEEEC--CC
Confidence 4588999999874 4889999887765665 789999999999888766543221 1223465555553 22
Q ss_pred CCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEe
Q 018231 177 ESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTT 254 (359)
Q Consensus 177 ~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~ 254 (359)
|++++++.+++ +|++|+++ |+| +|.+.|+++|.++|+++|+++++|++++.+...... .. ++|+++.
T Consensus 127 ------d~~~l~~~l~~-~tklV~l~~p~NptG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~~~~-~~---g~Divv~ 195 (390)
T PRK08064 127 ------NLEEVAQNIKP-NTKLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTFLTPLLQKPL-DL---GADVVLH 195 (390)
T ss_pred ------CHHHHHHhcCC-CceEEEEECCCCCCcEeccHHHHHHHHHHcCCEEEEECCCCcccccCch-hh---CCcEEEe
Confidence 78999999987 89999998 888 899999999999999999999999998765432221 22 4899999
Q ss_pred CCCCcCCCCCc---eEEEEeCC
Q 018231 255 TTHKSLRGPRG---AMIFFRKG 273 (359)
Q Consensus 255 s~~K~l~gp~g---G~l~~~~~ 273 (359)
|+||+++|+.+ |+++++++
T Consensus 196 S~tK~~~G~~~~laG~~v~~~~ 217 (390)
T PRK08064 196 SATKFLAGHSDVLAGLAVVKDE 217 (390)
T ss_pred ecceeccCCccceeEEEEeCCH
Confidence 99999988875 88887763
No 173
>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase. This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.
Probab=99.74 E-value=1.3e-16 Score=154.08 Aligned_cols=224 Identities=20% Similarity=0.174 Sum_probs=144.7
Q ss_pred CcHHHHHHHHhhhhccCCCCCCCCcc-cCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhhcC--
Q 018231 58 TSVSVMQAVGSVMTNKYSEGYPGARY-YGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLK-- 134 (359)
Q Consensus 58 ~~~~v~~al~~~~~~~~~~g~~~~~~-~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al~~-- 134 (359)
.+|.|++++.+.+.. +..+..+++. ++..+...+ +++.+++++|.+. .++++||+.++..++..+..
T Consensus 60 ~~p~v~~a~~~~~~~-~~~~~~~s~~~~g~~~~~~~----Le~~la~~~g~~~-----~l~~~sG~~an~~ai~~l~~~~ 129 (402)
T TIGR01821 60 QHPEVLQAMHETLDK-YGAGAGGTRNISGTNIPHVE----LEAELADLHGKES-----ALVFTSGYVANDATLATLAKII 129 (402)
T ss_pred CCHHHHHHHHHHHHH-cCCCCcchhhhhCCcHHHHH----HHHHHHHHhCCCe-----EEEECchHHHHHHHHHHhhCCC
Confidence 478999999998875 4323222222 222222333 5588999998643 58889998888878877754
Q ss_pred CCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhh---hCCcEEEEc-CCC-CCCh
Q 018231 135 PHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL---FRPKLIVAG-ASA-YARL 209 (359)
Q Consensus 135 ~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~---~~~k~v~l~-~~n-~g~~ 209 (359)
+||.|+.....|.+.... +...|.....+ +. .|++++++.++. .++++|+++ +.| +|.+
T Consensus 130 ~~~~v~~~~~~h~s~~~~--------~~~~g~~~~~~--~~------~d~~~l~~~l~~~~~~~~~~v~~e~~~~~~G~~ 193 (402)
T TIGR01821 130 PGCVIFSDELNHASMIEG--------IRHSGAEKFIF--RH------NDVAHLEKLLQSVDPNRPKIIAFESVYSMDGDI 193 (402)
T ss_pred CCCEEEEcchHhHHHHHH--------HHHcCCeEEEE--CC------CCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCc
Confidence 778777766566554332 22334333222 22 277888877752 257888887 555 8999
Q ss_pred hhHHHHHHHHHHcCCEEEEeccccccccc-c--CC-CCCCCC-CceEEEeCCCCcCCCCCceEEEEeCCcchhccCCcch
Q 018231 210 YDYERIRKVCNKQKAIMLADMAHISGLVA-A--GV-IPSPFE-YADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEV 284 (359)
Q Consensus 210 ~~l~~i~~la~~~~~~vivD~a~~~g~~~-~--~~-~~~~~~-~~D~v~~s~~K~l~gp~gG~l~~~~~~~~~~~~g~~~ 284 (359)
.|+++|.++|++||+++|+|++|+.|... . +. ...++. ..|+++.+++|+|++ .||+++.++
T Consensus 194 ~~l~~i~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~-~GG~i~~~~------------ 260 (402)
T TIGR01821 194 APIEEICDLADKYGALTYLDEVHAVGLYGPRGGGIAERDGLMHRIDIIEGTLAKAFGV-VGGYIAASR------------ 260 (402)
T ss_pred cCHHHHHHHHHHcCCEEEEeCcccccccCCCCCccchhccCCCCCeEEEEechhhhcc-CCceeecCH------------
Confidence 99999999999999999999999977542 1 11 111111 368999999999854 568887776
Q ss_pred hhhHHHhhccccCCCCC-CCCcHHHHHHHHHHHHHHhcc
Q 018231 285 FYDYEEKINQAVFPGLQ-GGPHNHTITGLAVALKQVCTL 322 (359)
Q Consensus 285 ~~~~~~~~~~~~~~~~~-gt~~~~~i~al~~Al~~~~~~ 322 (359)
++.+.+.....+..+ ++.+....+|..++++.+.+.
T Consensus 261 --~~~~~l~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~~ 297 (402)
T TIGR01821 261 --KLIDAIRSYAPGFIFTTSLPPAIAAGATASIRHLKES 297 (402)
T ss_pred --HHHHHHHHhCcCceecCcCCHHHHHHHHHHHHHhhcC
Confidence 444444322222222 445666677777889887754
No 174
>PRK08153 histidinol-phosphate aminotransferase; Provisional
Probab=99.74 E-value=8.3e-17 Score=153.65 Aligned_cols=222 Identities=15% Similarity=0.096 Sum_probs=145.8
Q ss_pred CceeeCCCCC--CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-H
Q 018231 48 GLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-S 124 (359)
Q Consensus 48 ~i~l~~~~~~--~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a 124 (359)
.++|..++++ +++.+++++.+...... +|+. .. ..+ +++.++++++++++ +|++|+|++ +
T Consensus 34 ~~~l~~~~~~~~~~~~~~~a~~~~~~~~~--~Y~~------~~-~~~----Lr~~ia~~~~~~~~----~I~it~G~~~~ 96 (369)
T PRK08153 34 RARIGANESGFGPSPSVIAAMREAAAEIW--KYGD------PE-NHD----LRHALAAHHGVAPE----NIMVGEGIDGL 96 (369)
T ss_pred eeEecCCCCCCCCCHHHHHHHHHHHHHhh--cCCC------Cc-cHH----HHHHHHHHhCCCHH----HEEEcCCHHHH
Confidence 3688888774 68889999888754311 2322 11 233 55778888898775 499999999 7
Q ss_pred HHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc-C
Q 018231 125 NFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-A 203 (359)
Q Consensus 125 ~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~-~ 203 (359)
+..++.++++|||.|++.++.|+.+ ...+...|.++..++ .+ + ..+|++++++.+...++++++++ |
T Consensus 97 l~~~~~~~~~~gd~vlv~~p~y~~~--------~~~~~~~g~~~~~vp--~~-~-~~~~~~~l~~~~~~~~~~~i~l~~P 164 (369)
T PRK08153 97 LGLIVRLYVEPGDPVVTSLGAYPTF--------NYHVAGFGGRLVTVP--YR-D-DREDLDALLDAARRENAPLVYLANP 164 (369)
T ss_pred HHHHHHHhcCCCCEEEECCCcchHH--------HHHHHHcCCeEEEee--CC-C-CCCCHHHHHHHhcccCCcEEEEeCC
Confidence 7768888899999999998555443 223344566665565 43 2 25799999877754489999887 8
Q ss_pred CC-CCChhhHHHHHHHHHHc--CCEEEEeccccccccccCCCCCCCC---CceEEEeCCCCcCC--CCCceEEEEeCCcc
Q 018231 204 SA-YARLYDYERIRKVCNKQ--KAIMLADMAHISGLVAAGVIPSPFE---YADVVTTTTHKSLR--GPRGAMIFFRKGVK 275 (359)
Q Consensus 204 ~n-~g~~~~l~~i~~la~~~--~~~vivD~a~~~g~~~~~~~~~~~~---~~D~v~~s~~K~l~--gp~gG~l~~~~~~~ 275 (359)
+| ||...+.+++.++++.. +++||+|+++..- ...+. ...+. ..-+++.|++|.++ |.+-|++++++
T Consensus 165 ~NPtG~~~~~~~l~~l~~~~~~~~~lI~DE~y~~~-~~~~~-~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~v~~~--- 239 (369)
T PRK08153 165 DNPMGSWHPAADIVAFIEALPETTLLVLDEAYCET-APAGA-APPIDTDDPNVIRMRTFSKAYGLAGARVGYAIGAP--- 239 (369)
T ss_pred CCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchhhh-cCccc-chhhhhcCCCEEEEecchHhccCcchheeeeecCH---
Confidence 88 99888887777776543 8999999997522 11110 01111 13488999999874 34449999876
Q ss_pred hhccCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHH
Q 018231 276 EINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALK 317 (359)
Q Consensus 276 ~~~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~ 317 (359)
++.+.+..... ..+.+.+...++.++|+
T Consensus 240 -----------~~~~~l~~~~~---~~~~s~~~q~~~~~~l~ 267 (369)
T PRK08153 240 -----------GTIKAFDKVRN---HFGMNRIAQAAALAALK 267 (369)
T ss_pred -----------HHHHHHHHhhc---CCCCCHHHHHHHHHHhc
Confidence 44444433221 12455666666666663
No 175
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=99.74 E-value=3.5e-17 Score=157.02 Aligned_cols=154 Identities=21% Similarity=0.223 Sum_probs=114.2
Q ss_pred HHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccC
Q 018231 97 CQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLN 176 (359)
Q Consensus 97 ~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 176 (359)
+++.+++++|.+. .+++++|+.++..++.+++++||+|+++.+.|++.+... ...+...|.+++.+ +.+
T Consensus 66 le~~la~l~g~~~-----~v~~ssG~~Ai~~al~al~~~Gd~Vi~~~~~y~~t~~~~----~~~~~~~G~~v~~v--d~~ 134 (390)
T PRK08133 66 FQERLAALEGAEA-----CVATASGMAAILAVVMALLQAGDHVVSSRSLFGSTVSLF----EKIFARFGIETTFV--DLT 134 (390)
T ss_pred HHHHHHHHhCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEccCcchhHHHHH----HHHHHHcCcEEEEE--CCC
Confidence 5588999999864 255555544888788899999999999988777654321 11222346555444 333
Q ss_pred CCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEe
Q 018231 177 ESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTT 254 (359)
Q Consensus 177 ~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~ 254 (359)
|++++++.+++ +||+|+++ ++| +|.+.|+++|.++|+++|+++|+|++++.+...... .. ++|++++
T Consensus 135 ------d~~~l~~~i~~-~tklV~ie~p~NptG~v~dl~~I~~la~~~gi~livD~t~~~~~~~~pl-~~---g~Divv~ 203 (390)
T PRK08133 135 ------DLDAWRAAVRP-NTKLFFLETPSNPLTELADIAALAEIAHAAGALLVVDNCFCTPALQQPL-KL---GADVVIH 203 (390)
T ss_pred ------CHHHHHHhcCc-CCeEEEEECCCCCCCCcCCHHHHHHHHHHcCCEEEEECCCcccccCCch-hh---CCcEEEe
Confidence 78999999987 89999997 888 899999999999999999999999998665442211 11 4899999
Q ss_pred CCCCcCCCCC---ceEEEEeC
Q 018231 255 TTHKSLRGPR---GAMIFFRK 272 (359)
Q Consensus 255 s~~K~l~gp~---gG~l~~~~ 272 (359)
|++|+++|+. ||+++.++
T Consensus 204 S~sK~~~g~g~~~GG~vv~~~ 224 (390)
T PRK08133 204 SATKYLDGQGRVLGGAVVGSK 224 (390)
T ss_pred ecceeecCCcceEeEEEEcCH
Confidence 9999997653 37777665
No 176
>PRK09064 5-aminolevulinate synthase; Validated
Probab=99.74 E-value=2.4e-16 Score=152.44 Aligned_cols=234 Identities=17% Similarity=0.151 Sum_probs=146.6
Q ss_pred CceeeCCCC---CCcHHHHHHHHhhhhccCCCCCCCCcc-cCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH
Q 018231 48 GLELIPSEN---FTSVSVMQAVGSVMTNKYSEGYPGARY-YGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP 123 (359)
Q Consensus 48 ~i~l~~~~~---~~~~~v~~al~~~~~~~~~~g~~~~~~-~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~ 123 (359)
.+++.+++- ..+|.+++++.+.+.. +..+..+++. ++..+...+ +++.+++++|.+. .+++++|+.
T Consensus 48 ~~~~~s~dylgl~~~p~v~~a~~~~~~~-~~~~~~~s~~~~g~~~~~~~----l~~~la~~~g~~~-----~~~~~sG~~ 117 (407)
T PRK09064 48 VTVWCSNDYLGMGQHPKVIEAMIEALDR-CGAGAGGTRNISGTNHYHVE----LERELADLHGKEA-----ALVFTSGYV 117 (407)
T ss_pred EEEEECCCCcCCCCCHHHHHHHHHHHHH-cCCCCCCcCcCccCHHHHHH----HHHHHHHHhCCCc-----EEEECcHHH
Confidence 466655433 2478999999988765 4223222222 222233344 4588888988642 588899988
Q ss_pred HHHHHHHhhcC--CCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhh---hCCcE
Q 018231 124 SNFQVYTALLK--PHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL---FRPKL 198 (359)
Q Consensus 124 a~~~~~~al~~--~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~---~~~k~ 198 (359)
++..++..+.. +++.|+...+.|.+... ++...+.....+ +. .|++++++.++. .++++
T Consensus 118 an~~ai~~l~~~~~~~~i~~~~~~h~s~~~--------~~~~~~~~~~~~--~~------~d~~~le~~l~~~~~~~~~~ 181 (407)
T PRK09064 118 SNDATLSTLAKLIPDCVIFSDELNHASMIE--------GIRRSRCEKHIF--RH------NDVAHLEELLAAADPDRPKL 181 (407)
T ss_pred HHHHHHHHHhCCCCCCEEEEeCcchHHHHH--------HHHHcCCcEEEE--CC------CCHHHHHHHHHhccCCCCeE
Confidence 88877777654 77777666555554432 222334333222 22 278888887752 26788
Q ss_pred EEEc-CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccc-cC--C-CCCCC-CCceEEEeCCCCcCCCCCceEEEEe
Q 018231 199 IVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVA-AG--V-IPSPF-EYADVVTTTTHKSLRGPRGAMIFFR 271 (359)
Q Consensus 199 v~l~-~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~-~~--~-~~~~~-~~~D~v~~s~~K~l~gp~gG~l~~~ 271 (359)
|+++ +.| +|.+.|+++|.++|+++|+++|+|++|+.|.+. .+ . ...+. ...|+++.+++|+|+ ..||+++++
T Consensus 182 v~~~~v~s~~G~~~~l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g-~~GG~~~~~ 260 (407)
T PRK09064 182 IAFESVYSMDGDIAPIAEICDLADKYNALTYLDEVHAVGMYGPRGGGIAERDGLMDRIDIIEGTLAKAFG-VMGGYIAGS 260 (407)
T ss_pred EEEeCCCCCCccccCHHHHHHHHHHcCCEEEEECCCcccccCCCCCChHHhcCCCCCCeEEEEecchhhh-ccCceEecC
Confidence 8887 445 789999999999999999999999999876532 11 1 11111 136899999999884 457888877
Q ss_pred CCcchhccCCcchhhhHHHhhccccCCCCC-CCCcHHHHHHHHHHHHHHhcc
Q 018231 272 KGVKEINKQGKEVFYDYEEKINQAVFPGLQ-GGPHNHTITGLAVALKQVCTL 322 (359)
Q Consensus 272 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-gt~~~~~i~al~~Al~~~~~~ 322 (359)
+ ++.+.+.....+..+ ++.+....+++.++++++.+.
T Consensus 261 ~--------------~~~~~l~~~~~~~~~t~~~~~~~~~aa~~al~~~~~~ 298 (407)
T PRK09064 261 A--------------ALVDAVRSYAPGFIFTTSLPPAIAAAALASIRHLKES 298 (407)
T ss_pred H--------------HHHHHHHHhCccccccCcCCHHHHHHHHHHHHHHhcC
Confidence 6 444443322222222 234445566777889887764
No 177
>PRK05939 hypothetical protein; Provisional
Probab=99.74 E-value=3.3e-17 Score=157.20 Aligned_cols=157 Identities=12% Similarity=0.099 Sum_probs=119.6
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeee
Q 018231 88 EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIF 167 (359)
Q Consensus 88 ~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~ 167 (359)
+....+| +.++++.|.+. .++++||..++..++.++++|||+|++++..|+++..... .....|++
T Consensus 47 p~~~~lE----~~la~leg~~~-----~v~~ssG~~Ai~~~l~all~~Gd~Vv~~~~~y~~t~~~~~-----~l~~~G~~ 112 (397)
T PRK05939 47 PTTAALE----AKITKMEGGVG-----TVCFATGMAAIAAVFLTLLRAGDHLVSSQFLFGNTNSLFG-----TLRGLGVE 112 (397)
T ss_pred HHHHHHH----HHHHHHhCCCe-----EEEeCCHHHHHHHHHHHHcCCCCEEEECCCccccHHHHHH-----HHHhcCCE
Confidence 4455555 78889999875 4899999778887888999999999999988876643222 12234655
Q ss_pred eEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCC
Q 018231 168 FETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP 245 (359)
Q Consensus 168 ~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~ 245 (359)
++.++ . .|++++++.+++ +|++|+++ ++| +|.+.|+++|+++|+++|+++|+|++|+.+.. .+....
T Consensus 113 v~~v~--~------~d~e~l~~~l~~-~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~a~~~~-~~~~~~- 181 (397)
T PRK05939 113 VTMVD--A------TDVQNVAAAIRP-NTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTMTSPWL-FRPKDV- 181 (397)
T ss_pred EEEEC--C------CCHHHHHHhCCC-CCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCcccccc-cCcccc-
Confidence 54443 2 289999999987 89999987 888 89999999999999999999999999876643 222222
Q ss_pred CCCceEEEeCCCCcCCCCCc--eEEEEe
Q 018231 246 FEYADVVTTTTHKSLRGPRG--AMIFFR 271 (359)
Q Consensus 246 ~~~~D~v~~s~~K~l~gp~g--G~l~~~ 271 (359)
++|+++.|++|+++|+.. |.+++.
T Consensus 182 --gaDivv~S~sK~~~g~g~~igg~v~~ 207 (397)
T PRK05939 182 --GASLVINSLSKYIAGHGNALGGAVTD 207 (397)
T ss_pred --CCEEEEecCeecccCCCCeEEEEEec
Confidence 499999999999987554 444443
No 178
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=99.74 E-value=3.4e-17 Score=157.26 Aligned_cols=154 Identities=17% Similarity=0.179 Sum_probs=115.1
Q ss_pred HHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccC
Q 018231 97 CQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLN 176 (359)
Q Consensus 97 ~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 176 (359)
+++.++++.|.+. .++++||+.++..++.+++++||+|+++.+.|++....+.. .+...|+++..+ +
T Consensus 69 le~~lA~l~g~~~-----~i~~ssG~~Ai~~~l~all~~GD~Vi~~~~~y~~~~~~~~~----~~~~~Gi~v~~v----d 135 (398)
T PRK08249 69 FEEKVRILEGAEA-----ATAFSTGMAAISNTLYTFLKPGDRVVSIKDTYGGTNKIFTE----FLPRMGVDVTLC----E 135 (398)
T ss_pred HHHHHHHHhCCCe-----EEEeCChHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHH----HHhhCCeEEEEc----C
Confidence 4488999999764 48888887788878889999999999999877764322211 122335444322 1
Q ss_pred CCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEe
Q 018231 177 ESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTT 254 (359)
Q Consensus 177 ~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~ 254 (359)
..|++++++.+++ +|++|+++ ++| +|.+.|+++|.++|+++|+++|+|++++.+...... .. ++|++++
T Consensus 136 ----~~d~e~l~~~i~~-~tklV~ie~p~NPtg~v~dl~~I~~la~~~gi~livD~t~a~~~~~~~l-~~---~~Divv~ 206 (398)
T PRK08249 136 ----TGDHEQIEAEIAK-GCDLLYLETPTNPTLKIVDIERLAAAAKKVGALVVVDNTFATPINQNPL-AL---GADLVIH 206 (398)
T ss_pred ----CCCHHHHHHhcCC-CCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCcCccccCCch-hh---CCCEEec
Confidence 2489999999987 89999997 888 899999999999999999999999998755432111 12 5899999
Q ss_pred CCCCcCCCCC---ceEEEEeC
Q 018231 255 TTHKSLRGPR---GAMIFFRK 272 (359)
Q Consensus 255 s~~K~l~gp~---gG~l~~~~ 272 (359)
|++|+++|+. ||+++.++
T Consensus 207 S~sK~l~g~~~~~gG~vv~~~ 227 (398)
T PRK08249 207 SATKFLSGHADALGGVVCGSK 227 (398)
T ss_pred cCceecCCCCCceEEEEECCH
Confidence 9999997754 36666544
No 179
>PRK14809 histidinol-phosphate aminotransferase; Provisional
Probab=99.74 E-value=1.2e-16 Score=151.86 Aligned_cols=196 Identities=13% Similarity=0.073 Sum_probs=133.9
Q ss_pred cCceeeCCCCC--CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-
Q 018231 47 KGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP- 123 (359)
Q Consensus 47 ~~i~l~~~~~~--~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~- 123 (359)
+.++|..++++ +|+.+.+++.+.+... .+|+. ....+ +++.++++++++++ +|++|+|++
T Consensus 31 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~--~~Y~~-------~~~~~----lr~~ia~~~~~~~~----~I~it~G~~~ 93 (357)
T PRK14809 31 DLVKLSSNENPHGPSPAAVEAIREAAERV--HSYPK-------ASHAD----LTAALADRWDVSPE----QVWLANGGDG 93 (357)
T ss_pred ceeEecCCCCCCCCCHHHHHHHHHHHhhh--hcCCC-------CCHHH----HHHHHHHHhCCCcc----eEEECCCHHH
Confidence 56899887774 6788889988776531 13332 12333 45777778898875 499999999
Q ss_pred HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc-
Q 018231 124 SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG- 202 (359)
Q Consensus 124 a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~- 202 (359)
++..++.++++|||.|+++++.|+ .+...+...|..++.++++.+ +++.+|++++++.. + ++|+++++
T Consensus 94 al~~~~~~~~~~gd~V~v~~P~y~--------~~~~~~~~~g~~~~~~~l~~~-~~~~~~~~~~~~~~-~-~~k~i~l~~ 162 (357)
T PRK14809 94 ALDYLARAMLDPGDTVLVPDPGFA--------YYGMSARYHHGEVREYPVSKA-DDFEQTADTVLDAY-D-GERIVYLTS 162 (357)
T ss_pred HHHHHHHHhcCCCCEEEEeCCChH--------HHHHHHHHcCCeEEEEecccC-cCCCcCHHHHHHhh-c-CCcEEEEeC
Confidence 877788999999999999995443 222234455666666665433 45778888887765 3 68999988
Q ss_pred CCC-CCChhhHHHHHHHHHHc--CCEEEEeccccccccccCCCCCCC-C--CceEEEeCCCCcCC--CCCceEEEEeC
Q 018231 203 ASA-YARLYDYERIRKVCNKQ--KAIMLADMAHISGLVAAGVIPSPF-E--YADVVTTTTHKSLR--GPRGAMIFFRK 272 (359)
Q Consensus 203 ~~n-~g~~~~l~~i~~la~~~--~~~vivD~a~~~g~~~~~~~~~~~-~--~~D~v~~s~~K~l~--gp~gG~l~~~~ 272 (359)
|+| ||...+.+++.++++.. ++++|+|+++..-... . ..... . .--+++.|++|.|+ |.+-|++++++
T Consensus 163 p~NPTG~~~s~~~~~~l~~~~~~~~~iI~De~y~~~~~~-~-~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~~~~~ 238 (357)
T PRK14809 163 PHNPTGSEIPLDEVEALAERTDEETLVVVDEAYGEFAER-P-SAVALVEERDDVAVLRTFSKAYGLAGLRLGYAVVPE 238 (357)
T ss_pred CCCCCCcCCCHHHHHHHHHhCccCcEEEEechhhhccCC-c-hhHHHHhhCCCEEEEecchhHhcCcchhheeeecCH
Confidence 888 99888877777776543 7899999997532111 0 00000 0 12377889999874 44449999987
No 180
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.73 E-value=3.2e-17 Score=158.73 Aligned_cols=147 Identities=14% Similarity=0.105 Sum_probs=113.3
Q ss_pred HHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccC
Q 018231 97 CQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLN 176 (359)
Q Consensus 97 ~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 176 (359)
+++.++++.|.++ .+++.||+.|+.+++.+++++||+|++++.+|++....... .....|++++.++ .+
T Consensus 69 le~~lA~l~g~~~-----av~~sSGt~Al~~al~~ll~~Gd~Vi~~~~~y~~t~~~~~~----~l~~~Gi~v~~vd--~~ 137 (433)
T PRK08134 69 LEERVAALEGGVG-----AIATASGQAALHLAIATLMGAGSHIVASSALYGGSHNLLHY----TLRRFGIETTFVK--PG 137 (433)
T ss_pred HHHHHHHHhCCCc-----EEEeCCHHHHHHHHHHHHhCCCCEEEEeCCccHHHHHHHHH----HHhhCCeEEEEEC--CC
Confidence 4488999999875 36666666687778888899999999999888765432211 1112355554443 32
Q ss_pred CCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEe
Q 018231 177 ESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTT 254 (359)
Q Consensus 177 ~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~ 254 (359)
|++++++.+++ +||+|++. ++| +|.+.|+++|.++|+++|+++|+|++|+.+.....+ .. ++|++++
T Consensus 138 ------d~~~l~~~i~~-~TklV~~e~~~np~g~v~Di~~I~~la~~~gi~livD~t~a~~~~~~pl-~~---GaD~vv~ 206 (433)
T PRK08134 138 ------DIDGWRAAIRP-NTRLLFGETLGNPGLEVLDIPTVAAIAHEAGVPLLVDSTFTTPYLLRPF-EH---GADLVYH 206 (433)
T ss_pred ------CHHHHHHhcCC-CCeEEEEECCCcccCcccCHHHHHHHHHHcCCEEEEECCCcccccCCch-hc---CCCEEEe
Confidence 89999999998 99999887 777 789999999999999999999999999888765432 23 4999999
Q ss_pred CCCCcCCCCCc
Q 018231 255 TTHKSLRGPRG 265 (359)
Q Consensus 255 s~~K~l~gp~g 265 (359)
|+||+++|+..
T Consensus 207 S~tK~l~g~g~ 217 (433)
T PRK08134 207 SATKFLGGHGT 217 (433)
T ss_pred ccccccCCCCC
Confidence 99999877653
No 181
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.73 E-value=2.5e-17 Score=159.41 Aligned_cols=155 Identities=15% Similarity=0.121 Sum_probs=117.3
Q ss_pred HHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccC
Q 018231 97 CQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLN 176 (359)
Q Consensus 97 ~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 176 (359)
+++.++++.|++. .|+++||++++.+++.+++++||+|++++.+|+++...... .+...|++++.++ +
T Consensus 74 le~~la~l~g~~~-----~v~fsSG~~Ai~~al~~ll~~Gd~VI~~~~~y~~t~~~~~~----~l~~~Gi~v~~vd---~ 141 (437)
T PRK05613 74 LENRIASLEGGVH-----AVAFASGQAAETAAILNLAGAGDHIVTSPRLYGGTETLFLV----TLNRLGIEVTFVE---N 141 (437)
T ss_pred HHHHHHHHhCCCe-----EEEeCCHHHHHHHHHHHhcCCCCEEEECCCccHHHHHHHHH----HHHhcCeEEEEEC---C
Confidence 4488999999853 59999999977778888899999999999888877432211 1223465554443 2
Q ss_pred CCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEe
Q 018231 177 ESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTT 254 (359)
Q Consensus 177 ~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~ 254 (359)
. .|++++++++++ +|++|++. ++| ++.+.|+++|.++|+++|+++|+|++|+.|..... ... |+|++++
T Consensus 142 -~---~d~e~l~~~l~~-~tk~V~~e~~~Np~~~v~di~~I~~la~~~gi~livD~t~a~g~~~~p-~~~---GaDivv~ 212 (437)
T PRK05613 142 -P---DDPESWQAAVQP-NTKAFFGETFANPQADVLDIPAVAEVAHRNQVPLIVDNTIATAALVRP-LEL---GADVVVA 212 (437)
T ss_pred -C---CCHHHHHHhCCc-cCeEEEEECCCCCCCcccCHHHHHHHHHHcCCeEEEECCCccccccCh-HHh---CCCEEEe
Confidence 1 288999999988 89988876 777 78999999999999999999999999987765322 223 4999999
Q ss_pred CCCCcCCCCC---ceEEEEeC
Q 018231 255 TTHKSLRGPR---GAMIFFRK 272 (359)
Q Consensus 255 s~~K~l~gp~---gG~l~~~~ 272 (359)
|+||+++|+. ||+++.+.
T Consensus 213 S~~K~l~G~gd~~gG~vv~~~ 233 (437)
T PRK05613 213 SLTKFYTGNGSGLGGVLIDGG 233 (437)
T ss_pred eccceecCCCcceeEEEEecC
Confidence 9999887653 35555443
No 182
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=99.73 E-value=1.1e-16 Score=138.94 Aligned_cols=202 Identities=17% Similarity=0.213 Sum_probs=151.3
Q ss_pred cCceeeC--CCCCCcHHHHHHHHhhhhccCCCCCCCCcccC-------CchhHHHHHHHHHHHHHHHcCCCCCCCceeEE
Q 018231 47 KGLELIP--SENFTSVSVMQAVGSVMTNKYSEGYPGARYYG-------GNEYIDMAESLCQKRALEAFRLDPEKWGVNVQ 117 (359)
Q Consensus 47 ~~i~l~~--~~~~~~~~v~~al~~~~~~~~~~g~~~~~~~~-------~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~ 117 (359)
+.||++| --..+++++++|+.+ |.+||+-+.+.. ....+.. ..+.+++++|+|. +.
T Consensus 16 ~~iNv~PiQrGGiLt~eArkal~E-----~gDGYSvCD~C~~Grldei~kPpI~~----F~~dlaeFlg~D~------~R 80 (382)
T COG1103 16 GFINVNPIQRGGILTEEARKALLE-----WGDGYSVCDFCLEGRLDEITKPPIKD----FLEDLAEFLGMDE------VR 80 (382)
T ss_pred CccccChhhccCcCCHHHHHHHHH-----hcCCcchhhhhccCccccccCCcHHH----HHHHHHHHhCCce------ee
Confidence 5678765 334678999988876 444665444432 1112222 2355999999985 99
Q ss_pred ECCChH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhh--
Q 018231 118 SLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF-- 194 (359)
Q Consensus 118 ~tsG~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~-- 194 (359)
+|.|+- +-.+++.+++++||.|++....|.+.+- .++..|.++..|| ....+.+.++++...+.|.+.
T Consensus 81 ~t~GARe~KfavMhal~~~gd~vV~D~~aHYttyv--------AAEragl~v~eVp-~tg~Pey~i~~e~y~~viee~~~ 151 (382)
T COG1103 81 VTAGAREAKFAVMHALCKEGDWVVVDSLAHYTTYV--------AAERAGLNVAEVP-NTGYPEYKITPEGYAEVIEEVKD 151 (382)
T ss_pred ecccchhhHHHHHHHhccCCCEEEEcCcchHHHHH--------HHHhcCCeEEecC-CCCCCceEecHHHHHHHHHHHHh
Confidence 999999 9888999999999999988765554322 4566788887787 333357889998877766431
Q ss_pred ----CCcEEEEc--CCCCCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEeCCCCcCCCCCc-eE
Q 018231 195 ----RPKLIVAG--ASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AM 267 (359)
Q Consensus 195 ----~~k~v~l~--~~n~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~ 267 (359)
.+.+.+++ ..++|.+.|.+.++++|+++|++++..+|.+.|.++......+ +||++.|+||++++... |+
T Consensus 152 ~~g~~~~lallTh~Dg~YGNl~Dakkva~ic~e~gvPlllN~AYt~Grmpvs~ke~g---~DFiVgSGHKsmAAs~PiGv 228 (382)
T COG1103 152 EGGDPPALALLTHVDGEYGNLADAKKVAKICREYGVPLLLNCAYTVGRMPVSGKEIG---ADFIVGSGHKSMAASAPIGV 228 (382)
T ss_pred ccCCCceEEEEeccCCCcCCchhhHHHHHHHHHcCCceEeecceeeccccccccccC---CCEEEecCccchhccCCeeE
Confidence 25566666 4459999999999999999999999999999999998877777 99999999999865433 99
Q ss_pred EEEeCCcc
Q 018231 268 IFFRKGVK 275 (359)
Q Consensus 268 l~~~~~~~ 275 (359)
+..+.++.
T Consensus 229 l~~~eE~a 236 (382)
T COG1103 229 LAMSEEWA 236 (382)
T ss_pred EeehhHHH
Confidence 98988653
No 183
>PRK09028 cystathionine beta-lyase; Provisional
Probab=99.73 E-value=4.9e-17 Score=155.18 Aligned_cols=153 Identities=10% Similarity=0.047 Sum_probs=110.0
Q ss_pred HHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEeccc
Q 018231 97 CQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL 175 (359)
Q Consensus 97 ~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 175 (359)
+++.++++.+.+. +++++|++ |+..++.++++|||+|+++++.|++..... .......|.++..+ +.
T Consensus 66 Le~~iA~le~~~~------~~~~~sG~~Ai~~~l~all~~GD~Vvv~~~~Y~~t~~l~----~~~l~~~Gi~v~~v--~~ 133 (394)
T PRK09028 66 FQAAIVELEGGAG------TALYPSGAAAISNALLSFLKAGDHLLMVDSCYEPTRDLC----DKILKGFGIETTYY--DP 133 (394)
T ss_pred HHHHHHHHhCCCc------EEEECCHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHH----HHhhhhcceEEEEE--CC
Confidence 4477888877643 55555555 888788899999999999997765443211 11112234444333 22
Q ss_pred CCCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEE
Q 018231 176 NESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVT 253 (359)
Q Consensus 176 ~~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~ 253 (359)
+ |.+.+++.+++ +||+|+++ ++| ++.+.|+++|+++|+++|+++++|++|+.+... ..... |+|+++
T Consensus 134 ~------~~e~l~~~l~~-~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~t~a~p~~~-~Pl~~---GaDivv 202 (394)
T PRK09028 134 M------IGEGIRELIRP-NTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNTWASPINS-RPFEM---GVDISI 202 (394)
T ss_pred C------CHHHHHHhcCc-CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCccccccC-Ccccc---CceEEE
Confidence 2 56889998887 89999998 888 889999999999999999999999999876422 11223 599999
Q ss_pred eCCCCcCCCCCc---eEEEEeC
Q 018231 254 TTTHKSLRGPRG---AMIFFRK 272 (359)
Q Consensus 254 ~s~~K~l~gp~g---G~l~~~~ 272 (359)
.|++||++|+.. |+++.++
T Consensus 203 ~S~tK~l~Gh~d~~~G~~~~~~ 224 (394)
T PRK09028 203 QAATKYIVGHSDVMLGTATANE 224 (394)
T ss_pred EeCCeEecCCCCEEEEEEECCH
Confidence 999999999865 6555444
No 184
>PRK03321 putative aminotransferase; Provisional
Probab=99.73 E-value=7.6e-17 Score=152.95 Aligned_cols=196 Identities=18% Similarity=0.142 Sum_probs=135.5
Q ss_pred cCceeeCCCCC--CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-
Q 018231 47 KGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP- 123 (359)
Q Consensus 47 ~~i~l~~~~~~--~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~- 123 (359)
+.|+|..+++. +++.+++++.+.+.. . ..|+ . .+..+ +++.++++++++++ +|++|+|++
T Consensus 23 ~~i~l~~~~~~~~~~~~~~~a~~~~~~~-~-~~y~------~-~g~~~----lr~~ia~~~~~~~~----~I~~~~G~~~ 85 (352)
T PRK03321 23 GAIKLSSNETPFGPLPSVRAAIARAAAG-V-NRYP------D-MGAVE----LRAALAEHLGVPPE----HVAVGCGSVA 85 (352)
T ss_pred cceeccCCCCCCCCCHHHHHHHHHHHHh-c-CcCC------C-CcHHH----HHHHHHHHhCcCHH----HEEECCCHHH
Confidence 35888877663 577899999887653 2 1222 1 23344 45778888898765 499999999
Q ss_pred HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc-
Q 018231 124 SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG- 202 (359)
Q Consensus 124 a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~- 202 (359)
++..++.++++|||+|+++.+.+.. +...+...|.++..++ .+ +++.+|++++++.+++ ++++++++
T Consensus 86 ~l~~~~~~~~~~gd~Vli~~p~y~~--------~~~~~~~~g~~~~~v~--~~-~~~~~~~~~l~~~~~~-~~~~v~l~~ 153 (352)
T PRK03321 86 LCQQLVQATAGPGDEVIFAWRSFEA--------YPILVQVAGATPVQVP--LT-PDHTHDLDAMAAAITD-RTRLIFVCN 153 (352)
T ss_pred HHHHHHHHhcCCCCEEEeCCCCHHH--------HHHHHHHcCCEEEEcc--CC-CCCCCCHHHHHHhhcc-CCCEEEEeC
Confidence 6666778889999999998744432 2222344565555454 44 3477899999999987 89999887
Q ss_pred CCC-CCChhhHHHHHHHHHH--cCCEEEEeccccccccccCCCCCCCC-----CceEEEeCCCCcCC--CCCceEEEEeC
Q 018231 203 ASA-YARLYDYERIRKVCNK--QKAIMLADMAHISGLVAAGVIPSPFE-----YADVVTTTTHKSLR--GPRGAMIFFRK 272 (359)
Q Consensus 203 ~~n-~g~~~~l~~i~~la~~--~~~~vivD~a~~~g~~~~~~~~~~~~-----~~D~v~~s~~K~l~--gp~gG~l~~~~ 272 (359)
++| +|...+.++|.++|+. +++++|+|+++...... +....++. .--+++.|.+|.|+ |.+.|++++++
T Consensus 154 p~NPtG~~~~~~~l~~l~~~~~~~~~ii~De~y~~~~~~-~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~~ 232 (352)
T PRK03321 154 PNNPTGTVVTPAELARFLDAVPADVLVVLDEAYVEYVRD-DDVPDGLELVRDHPNVVVLRTFSKAYGLAGLRVGYAVGHP 232 (352)
T ss_pred CCCCcCCCcCHHHHHHHHHhCCCCeEEEEechHHHhccC-cCCCcHHHHHhhCCCEEEEecchHHhhhHHHhhhhhcCCH
Confidence 888 9999999999999987 59999999997532221 11001100 12477889999874 33349999876
No 185
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=99.73 E-value=1.8e-16 Score=151.62 Aligned_cols=203 Identities=11% Similarity=0.019 Sum_probs=134.7
Q ss_pred cCceeeCCCCC--CcHHHHHHHHhhhhccC-CCCCCCCcccCCchhHHHHHHHHHHHHHHHcC----CCCCCCceeEEEC
Q 018231 47 KGLELIPSENF--TSVSVMQAVGSVMTNKY-SEGYPGARYYGGNEYIDMAESLCQKRALEAFR----LDPEKWGVNVQSL 119 (359)
Q Consensus 47 ~~i~l~~~~~~--~~~~v~~al~~~~~~~~-~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g----~~~~~~~~~v~~t 119 (359)
+.++|..++++ +|+.+++++.+.+.... ..+| +. .+..++++++.+++.+.++ ++++ +|++|
T Consensus 29 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y------~~-~G~~~Lr~aia~~~~~~~~~~~~v~~~----~I~it 97 (374)
T PRK02610 29 QLDRLDTNEFPYDLPPDLKQKLAWLYQQGIESNRY------PD-GGHEALKQAIAEYVNESAAGSSQITPA----NISVG 97 (374)
T ss_pred ceeEecCCCCCCCCCHHHHHHHHHHHhhcccccCC------CC-CchHHHHHHHHHHhCccccccCCCCHH----HEEEc
Confidence 35788888875 68899999988765421 1122 22 3456666556666655432 5554 49999
Q ss_pred CChH-HHHHHHHhhcCCCC-eeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhh---h
Q 018231 120 SGSP-SNFQVYTALLKPHD-RIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL---F 194 (359)
Q Consensus 120 sG~~-a~~~~~~al~~~Gd-~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~---~ 194 (359)
+|++ ++..++.+++.+|| .|++++ |.|..+...+...|+++..++ .+.+++.+|++++++.+++ .
T Consensus 98 ~Ga~~al~~~~~~~~~~g~~~Vlv~~--------P~y~~~~~~~~~~g~~~~~~~--~~~~~~~~d~~~l~~~~~~~~~~ 167 (374)
T PRK02610 98 NGSDELIRSLLIATCLGGEGSILVAE--------PTFSMYGILAQTLGIPVVRVG--RDPETFEIDLAAAQSAIEQTQNP 167 (374)
T ss_pred CChHHHHHHHHHHHcCCCCCeEEEcC--------CChHHHHHHHHHcCCEEEEec--CCcccCCCCHHHHHHHHHhhcCC
Confidence 9999 77667778888886 899999 444444445566777665554 5534688999999998864 4
Q ss_pred CCcEEEEc-CCC-CCChhhHHHHHHHHH-HcCCEEEEeccccccccccCCCCCCCCC--ceEEEeCCCCcCC--CCCceE
Q 018231 195 RPKLIVAG-ASA-YARLYDYERIRKVCN-KQKAIMLADMAHISGLVAAGVIPSPFEY--ADVVTTTTHKSLR--GPRGAM 267 (359)
Q Consensus 195 ~~k~v~l~-~~n-~g~~~~l~~i~~la~-~~~~~vivD~a~~~g~~~~~~~~~~~~~--~D~v~~s~~K~l~--gp~gG~ 267 (359)
++|+++++ |+| ||...+.+++.++++ .+++++|+|+++..-... .. ...+.. --+++.|++|.++ |.+-|+
T Consensus 168 ~~k~i~l~~P~NPTG~~~s~~~l~~l~~~~~~~~iI~De~Y~~~~~~-~~-~~~~~~~~~~ivi~SfSK~~g~~GlRiG~ 245 (374)
T PRK02610 168 PVRVVFVVHPNSPTGNPLTAAELEWLRSLPEDILVVIDEAYFEFSQT-TL-VGELAQHPNWVILRTFSKAFRLAAHRVGY 245 (374)
T ss_pred CceEEEEeCCCCCCCCCCCHHHHHHHHhccCCcEEEEeccccccCcc-ch-HHHHhcCCCEEEEEecchhccCcccceee
Confidence 89999988 888 997776665555542 148999999997421110 00 000011 2378899999873 444499
Q ss_pred EEEeC
Q 018231 268 IFFRK 272 (359)
Q Consensus 268 l~~~~ 272 (359)
++.++
T Consensus 246 ~v~~~ 250 (374)
T PRK02610 246 AIGHP 250 (374)
T ss_pred eecCH
Confidence 99866
No 186
>PRK08175 aminotransferase; Validated
Probab=99.73 E-value=8.1e-16 Score=148.19 Aligned_cols=204 Identities=16% Similarity=0.168 Sum_probs=134.9
Q ss_pred cCceeeCCCC--CCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCC--CCCCCceeEEECCCh
Q 018231 47 KGLELIPSEN--FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRL--DPEKWGVNVQSLSGS 122 (359)
Q Consensus 47 ~~i~l~~~~~--~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~--~~~~~~~~v~~tsG~ 122 (359)
..++|..+.. .+++.+.+++.+.+.... ...|+...+..++++++++++.+.+|. ++++ +|++|+|+
T Consensus 30 ~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~------~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~---~i~~t~G~ 100 (395)
T PRK08175 30 DIIDFSMGNPDGPTPPHIVEKLCEVAQRPD------THGYSTSRGIPRLRRAISRWYQDRYDVDIDPES---EAIVTIGS 100 (395)
T ss_pred CeEEcCCCCCCCCCCHHHHHHHHHHHhCCC------cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC---cEEEccCc
Confidence 4577765433 246667777776554311 122344466778888888888877775 4432 49999999
Q ss_pred H-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhh--hCCcEE
Q 018231 123 P-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL--FRPKLI 199 (359)
Q Consensus 123 ~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~--~~~k~v 199 (359)
+ ++..++.++++|||+|+++++.|+.+.. .+...|.++..++ .+.+ ..+++++++++++ .+++++
T Consensus 101 ~~~l~~~~~~~~~~gd~Vlv~~P~y~~~~~--------~~~~~g~~~~~v~--~~~~--~~~~~~l~~~l~~~~~~~~~v 168 (395)
T PRK08175 101 KEGLAHLMLATLDHGDTVLVPNPSYPIHIY--------GAVIAGAQVRSVP--LVEG--VDFFNELERAIRESYPKPKMM 168 (395)
T ss_pred HHHHHHHHHHhCCCCCEEEEcCCCCcchHH--------HHHHcCCeEEEEe--cccC--CCcHHHHHHHHhhccCCceEE
Confidence 8 7776888889999999999966654422 3334566665554 4422 2247888887763 268899
Q ss_pred EEc-CCC-CCChhhH---HHHHHHHHHcCCEEEEeccccccccccCCCCCC---C---CCceEEEeCCCCcCCCC--Cce
Q 018231 200 VAG-ASA-YARLYDY---ERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP---F---EYADVVTTTTHKSLRGP--RGA 266 (359)
Q Consensus 200 ~l~-~~n-~g~~~~l---~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~---~---~~~D~v~~s~~K~l~gp--~gG 266 (359)
+++ |+| ||...+. ++|.++|+++|+++|+|+++..... .+..... + .+..+++.|++|.|+.| +.|
T Consensus 169 ~i~~p~NPtG~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~-~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~pGlRiG 247 (395)
T PRK08175 169 ILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVY-DGWKAPSIMQVPGAKDVAVEFFTLSKSYNMAGWRIG 247 (395)
T ss_pred EEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchHhhcc-CCCCCcchhcCCCcccCEEEEeeccccccCcchhhe
Confidence 888 888 8966655 7889999999999999999753222 1110001 1 12346789999988433 239
Q ss_pred EEEEeC
Q 018231 267 MIFFRK 272 (359)
Q Consensus 267 ~l~~~~ 272 (359)
+++.++
T Consensus 248 ~~~~~~ 253 (395)
T PRK08175 248 FMVGNP 253 (395)
T ss_pred eeeCCH
Confidence 998766
No 187
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=99.73 E-value=3.3e-16 Score=149.32 Aligned_cols=215 Identities=15% Similarity=0.069 Sum_probs=142.1
Q ss_pred ccccccccChHHHHHHHHHHHHh-hcCceeeCCCC--CCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHH
Q 018231 23 LNAPLEVVDPEIADIIEHEKARQ-WKGLELIPSEN--FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQK 99 (359)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~-~~~i~l~~~~~--~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~ 99 (359)
++++++....+++..+.+..... ...++|..+++ +.++.+++++.+.... . +| +...+..++++++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~-~--~Y------~~~~G~~~lr~~ia~ 73 (364)
T PRK07865 3 VSARLPDFPWDTLAPAKATAAAHPDGIVDLSVGTPVDPVPPVIQEALAAAADA-P--GY------PTTAGTPELREAIVG 73 (364)
T ss_pred ccccCCCccHHHHHHHHHHHHhcCCCEEEcCCCCCCCCCCHHHHHHHHHHHhh-C--CC------CCccCCHHHHHHHHH
Confidence 56778888888888876654443 35688887654 3467788888765432 1 22 333456677878888
Q ss_pred HHHHHcCCC---CCCCceeEEECCChH-HHHHHHHhh-cCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecc
Q 018231 100 RALEAFRLD---PEKWGVNVQSLSGSP-SNFQVYTAL-LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYR 174 (359)
Q Consensus 100 ~~a~~~g~~---~~~~~~~v~~tsG~~-a~~~~~~al-~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 174 (359)
++.+.+|.+ ++ +|++|+|++ ++..++..+ +++||+|+++++.|+++ ...+...|+++..+
T Consensus 74 ~l~~~~~~~~~~~~----~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~--------~~~~~~~g~~~~~~--- 138 (364)
T PRK07865 74 WLARRRGVTGLDPA----AVLPVIGSKELVAWLPTLLGLGPGDVVVIPELAYPTY--------EVGARLAGATVVRA--- 138 (364)
T ss_pred HHHHHcCCCCCCcc----cEEEccChHHHHHHHHHHHcCCCCCEEEECCCCcccH--------HHHHHhcCCEEEec---
Confidence 888877753 44 599999999 776566777 79999999999665544 32344556554333
Q ss_pred cCCCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChh---hHHHHHHHHHHcCCEEEEeccccccccccC-CC---CC-
Q 018231 175 LNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLY---DYERIRKVCNKQKAIMLADMAHISGLVAAG-VI---PS- 244 (359)
Q Consensus 175 ~~~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~---~l~~i~~la~~~~~~vivD~a~~~g~~~~~-~~---~~- 244 (359)
+ ++++++. + ++++++++ ++| ||... .+++|.++|+++|+++|+|++++.-..... .. ..
T Consensus 139 -~------~~~~l~~---~-~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~ 207 (364)
T PRK07865 139 -D------SLTELGP---Q-RPALIWLNSPSNPTGRVLGVDHLRKVVAWARERGAVVASDECYLELGWDAEPVSILDPRV 207 (364)
T ss_pred -C------ChhhCCc---c-cceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhhhccCCCCCccccccc
Confidence 1 2333332 3 78999987 888 88554 467888899999999999999863221110 00 00
Q ss_pred -CCC-CceEEEeCCCCcCC--CCCceEEEEeC
Q 018231 245 -PFE-YADVVTTTTHKSLR--GPRGAMIFFRK 272 (359)
Q Consensus 245 -~~~-~~D~v~~s~~K~l~--gp~gG~l~~~~ 272 (359)
+.. ...+++.|++|.++ |.+.|+++.++
T Consensus 208 ~~~~~~~~i~~~S~SK~~~~~GlRiG~i~~~~ 239 (364)
T PRK07865 208 CGGDHTGLLAVHSLSKQSNLAGYRAGFVAGDP 239 (364)
T ss_pred cCCccceEEEEeechhccCCCceeeEEEecCH
Confidence 000 13489999999874 44459988766
No 188
>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase. This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)
Probab=99.73 E-value=2.6e-16 Score=149.72 Aligned_cols=207 Identities=15% Similarity=0.202 Sum_probs=135.1
Q ss_pred cCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEEC-CChHHHHHHHHhhcCCCCeeeecCCCCCcccCcccccccccee
Q 018231 84 YGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSL-SGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKIS 162 (359)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~t-sG~~a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~ 162 (359)
|+++....++| +.+++++|.+. ++++ ||+.|...+....++|||.| +++.|-.. . ...+.
T Consensus 67 yag~~s~~~lE----~~va~~~G~~~------av~v~sGT~Al~ll~~l~l~pGDeV--psn~~f~T---t----~ahIe 127 (450)
T TIGR02618 67 YAGSRNFYHLE----RTVRELYGFKY------VVPTHQGRGAENLLSQIAIKPGDYV--PGNMYFTT---T----RYHQE 127 (450)
T ss_pred hcCCCcHHHHH----HHHHHHHCCCe------EEEcCCHHHHHHHHHHhCCCCcCEE--CCceeHHH---H----HHHHH
Confidence 45556666766 77888999886 5555 55557554555669999987 33222111 1 11133
Q ss_pred eeeeeeEEEecc------c-CCCCCCCCHHHHHHHhhhh---CCcEEEEc-CCC-C-CCh---hhHHHHHHHHHHcCCEE
Q 018231 163 AVSIFFETMPYR------L-NESTGYIDYDQLEKSATLF---RPKLIVAG-ASA-Y-ARL---YDYERIRKVCNKQKAIM 226 (359)
Q Consensus 163 ~~g~~~~~v~~~------~-~~~~~~~d~e~l~~~i~~~---~~k~v~l~-~~n-~-g~~---~~l~~i~~la~~~~~~v 226 (359)
..|..+..++.+ . ++.++.+|+++|++.+++. ++++|.+. ++| . |.. .++++|.++|++||+.|
T Consensus 128 ~~Gav~vDi~~dea~~~~~~~p~~GniD~~~Le~aI~~~~~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~v 207 (450)
T TIGR02618 128 KNGATFVDIIIDEAHDAQLNIPFKGNVDLKKLQKLIDEVGADKIPYICLAVTVNLAGGQPVSMANMREVRELCEAHGIKV 207 (450)
T ss_pred hCCeEEEeeecccccccccCCCCCCCcCHHHHHHHhccccCcccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEE
Confidence 445433223211 0 2346889999999999862 23455554 666 4 554 56899999999999999
Q ss_pred EEecccccccccc------CCCCCC--------CCCceEEEeCCCCcCCCCCceEEEEeCCcchhccCCcchhhhHHHhh
Q 018231 227 LADMAHISGLVAA------GVIPSP--------FEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKI 292 (359)
Q Consensus 227 ivD~a~~~g~~~~------~~~~~~--------~~~~D~v~~s~~K~l~gp~gG~l~~~~~~~~~~~~g~~~~~~~~~~~ 292 (359)
|.|+||++|...+ +....+ +.++|.+++|++|.+++|.||+|+++++ ++.++.
T Consensus 208 i~DaAR~~gNA~~I~~re~g~~~~~i~ei~~e~~~~aD~~~~S~~Kd~~~~~GG~l~~~d~-------------~l~~k~ 274 (450)
T TIGR02618 208 FYDATRCVENAYFIKEREQGYEDKSIAEILKEMMSYADGCTMSGKKDCLVNIGGFLCMNDD-------------EMFQSA 274 (450)
T ss_pred EEEccchhhChhhhhcccccccCCCHHHHHHHHhccCcEEEEeeccCCCCCCceEEEeCCH-------------HHHHHH
Confidence 9999999864322 111112 2368999999999999999999999886 666554
Q ss_pred ccc--cCCCC--CCCCcHHHHHHHHHHHHHHhcc
Q 018231 293 NQA--VFPGL--QGGPHNHTITGLAVALKQVCTL 322 (359)
Q Consensus 293 ~~~--~~~~~--~gt~~~~~i~al~~Al~~~~~~ 322 (359)
+.. .+.+. .|....-.+.|+..+|++..++
T Consensus 275 r~~~~~~eG~~tyGgla~r~~~ala~gL~e~~~~ 308 (450)
T TIGR02618 275 KELVVVFEGMPSYGGLAGRDMEAMAIGIREAVDY 308 (450)
T ss_pred HHHhhhcCCccccCchhhhhHHHHHHHHHHhhhH
Confidence 443 23333 2555666788888888887654
No 189
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=99.73 E-value=4.6e-17 Score=155.31 Aligned_cols=158 Identities=21% Similarity=0.240 Sum_probs=118.9
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeee
Q 018231 88 EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIF 167 (359)
Q Consensus 88 ~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~ 167 (359)
+...++| +.+++++|.+. .++++||+.|+..++.+++++||+|+++.+.|++...... ......|.+
T Consensus 40 p~~~~le----~~la~l~g~~~-----a~~~~sG~~Ai~~~l~~l~~~gd~Vl~~~~~y~~~~~~~~----~~~~~~g~~ 106 (369)
T cd00614 40 PTVDALE----KKLAALEGGEA-----ALAFSSGMAAISTVLLALLKAGDHVVASDDLYGGTYRLFE----RLLPKLGIE 106 (369)
T ss_pred hhHHHHH----HHHHHHHCCCC-----EEEEcCHHHHHHHHHHHHcCCCCEEEECCCCcchHHHHHH----HHHhhcCeE
Confidence 3345555 78888998754 4777777768888999999999999999877766532211 112234544
Q ss_pred eEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCC
Q 018231 168 FETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP 245 (359)
Q Consensus 168 ~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~ 245 (359)
+..+ +.+ |++++++.+++ ++++|++. ++| +|.+.|+++|.++|+++|+++|+|++|+.+.... +
T Consensus 107 ~~~v--~~~------d~~~l~~~i~~-~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~livD~t~~~~~~~~-----~ 172 (369)
T cd00614 107 VTFV--DPD------DPEALEAAIKP-ETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNTFATPYLQR-----P 172 (369)
T ss_pred EEEe--CCC------CHHHHHHhcCC-CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcchhcCC-----h
Confidence 4444 233 68999999987 89999987 777 8899999999999999999999999998765421 2
Q ss_pred CC-CceEEEeCCCCcCCCCC---ceEEEEeC
Q 018231 246 FE-YADVVTTTTHKSLRGPR---GAMIFFRK 272 (359)
Q Consensus 246 ~~-~~D~v~~s~~K~l~gp~---gG~l~~~~ 272 (359)
+. ++|++++|++|+++|+. ||++++++
T Consensus 173 ~~~g~Divv~S~tK~l~g~~~~~gG~v~~~~ 203 (369)
T cd00614 173 LELGADIVVHSATKYIGGHSDVIAGVVVGSG 203 (369)
T ss_pred hhhCCcEEEeccceeccCCCCceEEEEEeCc
Confidence 22 48999999999998754 58888876
No 190
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
Probab=99.73 E-value=3.5e-16 Score=151.53 Aligned_cols=200 Identities=16% Similarity=0.130 Sum_probs=144.2
Q ss_pred CCCCCCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHh
Q 018231 53 PSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTA 131 (359)
Q Consensus 53 ~~~~~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~a 131 (359)
.....+++.+.+++...+..+. +.++. .....++|+.+..+++++++.+.+. .-.+|+|+| +|++++.+
T Consensus 69 ~~~~~~~~~a~~~~~~~~~~nl--~d~~~-----~p~a~~~E~~~v~~l~~l~~~~~~~---~G~~t~GgTean~lal~a 138 (460)
T COG0076 69 FCPTRVPPVAAELLVSALNKNL--GDPDE-----SPAAAELEERVVNMLSDLLGAPEEA---SGTFTSGGTEANLLALLA 138 (460)
T ss_pred cCCCCCHHHHHHHHHHHHhhcC--CCccc-----ChhHHHHHHHHHHHHHHHhCCCCCC---ceEEEcChHHHHHHHHHH
Confidence 4445567888888888877644 33222 1346778888999999999996433 478888888 88765544
Q ss_pred h---cC--C---CC------eeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCc
Q 018231 132 L---LK--P---HD------RIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPK 197 (359)
Q Consensus 132 l---~~--~---Gd------~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k 197 (359)
. .. . +. +|+++...|.++ .. .+.+.|.+.+.++. ++.++.+|++++++++++ .+-
T Consensus 139 ar~~~~~~~~~~~~~~~~~P~ii~s~~aH~s~---~K-----aa~~lG~~~~~v~~--~~~~~~id~~~l~~~i~~-~t~ 207 (460)
T COG0076 139 ARERWRKRALAESGKPGGKPNIVCSETAHFSF---EK-----AARYLGLGLRRVPT--VPTDYRIDVDALEEAIDE-NTI 207 (460)
T ss_pred HHHHHHHHhhhcccccCCCCeEEecCcchhHH---HH-----HHHHhCCCceeEEe--ccCccccCHHHHHHHHHh-hcc
Confidence 3 11 1 11 577666444433 22 56677887877764 323689999999999998 444
Q ss_pred E--EEEc--CCCCCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCC----CCCceEEEeCCCCcCCCCCc-eEE
Q 018231 198 L--IVAG--ASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP----FEYADVVTTTTHKSLRGPRG-AMI 268 (359)
Q Consensus 198 ~--v~l~--~~n~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~----~~~~D~v~~s~~K~l~gp~g-G~l 268 (359)
. |+.+ .+.+|.+.|+++|+++|++++++++||+|.+....++.-.... +.++|.++.++||++..|.| |++
T Consensus 208 ~g~vV~~aGtT~~G~iDdi~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~~~~f~l~~vdSIt~d~HK~g~aP~~~G~i 287 (460)
T COG0076 208 GGVVVGTAGTTDTGSIDDIEELADIAEEYGIWLHVDAAFGGFLLPFLEPDGRWDFGLEGVDSITVDGHKYGLAPIGCGVV 287 (460)
T ss_pred CceEEEEecCCCCCccCCHHHHHHHHHHcCCcEEEEccccceeecccCccchhhcCCCCceEEEECcccccCCCCCceEE
Confidence 3 4444 4448999999999999999999999999976666655433322 33799999999999999999 999
Q ss_pred EEeCC
Q 018231 269 FFRKG 273 (359)
Q Consensus 269 ~~~~~ 273 (359)
+++++
T Consensus 288 l~rd~ 292 (460)
T COG0076 288 LFRDE 292 (460)
T ss_pred EEECH
Confidence 99996
No 191
>PRK05839 hypothetical protein; Provisional
Probab=99.72 E-value=7.2e-16 Score=147.45 Aligned_cols=201 Identities=15% Similarity=0.064 Sum_probs=133.6
Q ss_pred cCceeeCCCCC--CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCC--CCCCCceeEEECCCh
Q 018231 47 KGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRL--DPEKWGVNVQSLSGS 122 (359)
Q Consensus 47 ~~i~l~~~~~~--~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~--~~~~~~~~v~~tsG~ 122 (359)
..++|..++++ +++.+.+++.+.... . ..|+...+..++++++++++++.+|. +++ +|++|+|+
T Consensus 25 ~~i~l~~~~p~~~~~~~~~~a~~~~~~~-~-------~~Y~~~~G~~~lr~aia~~l~~~~g~~~~~~----~I~it~G~ 92 (374)
T PRK05839 25 KGLDLTIGEPQFETPKFIQDALKNNAHL-L-------NKYPKSAGEESLREAQRGFFKRRFKIELKEN----ELIPTFGT 92 (374)
T ss_pred CeEEcCCCCCCCCCCHHHHHHHHHHhhc-c-------CCCCCCCCCHHHHHHHHHHHHHHhCCCCCcc----eEEEecCc
Confidence 56888877663 577788887765432 1 12344456677888888999888884 554 59999999
Q ss_pred H-HHHHHHHhhc--CCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEE
Q 018231 123 P-SNFQVYTALL--KPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLI 199 (359)
Q Consensus 123 ~-a~~~~~~al~--~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v 199 (359)
+ ++..++.+++ ++||.|+++. |.|..+...+...|+++..++++.+ +++.+|+++.+ + + ++|++
T Consensus 93 ~~al~~~~~~~~~~~~gd~vlv~~--------P~y~~~~~~~~~~g~~v~~v~~~~~-~~~~~d~~~~~--~-~-~~k~v 159 (374)
T PRK05839 93 REVLFNFPQFVLFDKQNPTIAYPN--------PFYQIYEGAAIASRAKVLLMPLTKE-NDFTPSLNEKE--L-Q-EVDLV 159 (374)
T ss_pred HHHHHHHHHHHhcCCCCCEEEECC--------CCchhhHHHHHhcCCEEEEeecccc-cCCcCCcchhh--h-c-cccEE
Confidence 9 7776667764 5899999998 4444444455566777766654222 35677765542 2 3 68999
Q ss_pred EEc-CCC-CCChh---hHHHHHHHHHHcCCEEEEeccccccccccCCCC-CC------C-C-CceEEEeCCCCcC--CCC
Q 018231 200 VAG-ASA-YARLY---DYERIRKVCNKQKAIMLADMAHISGLVAAGVIP-SP------F-E-YADVVTTTTHKSL--RGP 263 (359)
Q Consensus 200 ~l~-~~n-~g~~~---~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~-~~------~-~-~~D~v~~s~~K~l--~gp 263 (359)
+++ |+| ||... .+++|+++|+++|+++|+|++++.-........ .. . . .--+++.|.+|.+ .|.
T Consensus 160 ~i~nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~~~~Gl 239 (374)
T PRK05839 160 ILNSPNNPTGRTLSLEELIEWVKLALKHDFILINDECYSEIYENTPPPSLLEASILVGNESFKNVLVINSISKRSSAPGL 239 (374)
T ss_pred EEeCCCCCcCcccCHHHHHHHHHHHHHcCCEEEeccchhhcccCCCCCCHhhhhcccCccccCcEEEEeccccccCCccc
Confidence 988 888 99554 466788889999999999999753111000000 00 0 0 1238889999975 444
Q ss_pred CceEEEEeC
Q 018231 264 RGAMIFFRK 272 (359)
Q Consensus 264 ~gG~l~~~~ 272 (359)
+.|+++.++
T Consensus 240 RiG~ii~~~ 248 (374)
T PRK05839 240 RSGFIAGDA 248 (374)
T ss_pred eeEEEecCH
Confidence 559999876
No 192
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=99.72 E-value=1.3e-16 Score=152.46 Aligned_cols=197 Identities=16% Similarity=0.136 Sum_probs=134.4
Q ss_pred cCceeeCCCCC--CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-
Q 018231 47 KGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP- 123 (359)
Q Consensus 47 ~~i~l~~~~~~--~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~- 123 (359)
+.++|..++++ +++.+.+++.+...... .| +...+. + +++.+++++|++++ +|++|+|++
T Consensus 37 ~~i~l~~~~~~~~~~~~~~~al~~~~~~~~--~Y------~~~~g~-~----lr~~ia~~~~~~~~----~i~~t~G~~~ 99 (371)
T PRK05166 37 RIAKLGSNENPLGPSPAVRRAFADIAELLR--LY------PDPQGR-A----LREAIAARTGVPAD----RIILGNGSED 99 (371)
T ss_pred ceEEcCCCCCCCCCCHHHHHHHHHHHHHhh--cC------CCCcHH-H----HHHHHHHHhCcCHH----HEEEcCCHHH
Confidence 56889887764 67888888876543211 22 222332 3 55778888898765 499999999
Q ss_pred HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc-
Q 018231 124 SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG- 202 (359)
Q Consensus 124 a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~- 202 (359)
++..++.+++++||+|++..++|+. +...+...|.+++.++ .+ +++.+|++++++.+++ ++++++++
T Consensus 100 ~l~~~~~~~~~~gd~vli~~P~y~~--------~~~~~~~~g~~~~~v~--~~-~~~~~~~~~l~~~~~~-~~~~v~l~~ 167 (371)
T PRK05166 100 LIAVICRAVLRPGDRVVTLYPSFPL--------HEDYPTMMGARVERVT--VT-PDLGFDLDALCAAVAR-APRMLMFSN 167 (371)
T ss_pred HHHHHHHHhcCCCCEEEEcCCChHH--------HHHHHHHcCCeEEEee--cC-CCCCCCHHHHHHhhhc-CCCEEEEeC
Confidence 7776888889999999998855543 3323445676665554 44 4578999999999887 89999887
Q ss_pred CCC-CCChhhHHHHHHHHHH--cCCEEEEeccccccccccCCCCCC---CC---CceEEEeCCCCcCC--CCCceEEEEe
Q 018231 203 ASA-YARLYDYERIRKVCNK--QKAIMLADMAHISGLVAAGVIPSP---FE---YADVVTTTTHKSLR--GPRGAMIFFR 271 (359)
Q Consensus 203 ~~n-~g~~~~l~~i~~la~~--~~~~vivD~a~~~g~~~~~~~~~~---~~---~~D~v~~s~~K~l~--gp~gG~l~~~ 271 (359)
++| ||...+.+++.++++. .++++|+|+++..-. ..+..... +. ..-+++.|++|.|+ |.+-|++++.
T Consensus 168 p~NPtG~~~~~~~~~~l~~~~~~~~~ii~De~y~~~~-~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~l~GlRiG~~i~~ 246 (371)
T PRK05166 168 PSNPVGSWLTADQLARVLDATPPETLIVVDEAYAEYA-AGDDYPSALTLLKARGLPWIVLRTFSKAYGLAGLRVGYGLVS 246 (371)
T ss_pred CCCCCCCCCCHHHHHHHHHhCCCCcEEEEECcHHHhc-CCcCcccHHHHHhhcCCCEEEEeechHhhhcchhheeeeecC
Confidence 888 9988887766666553 478999999975322 11111110 00 12478999999873 4444998875
Q ss_pred CC
Q 018231 272 KG 273 (359)
Q Consensus 272 ~~ 273 (359)
++
T Consensus 247 ~~ 248 (371)
T PRK05166 247 DP 248 (371)
T ss_pred CH
Confidence 53
No 193
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=99.72 E-value=5.2e-16 Score=150.20 Aligned_cols=217 Identities=12% Similarity=0.052 Sum_probs=135.3
Q ss_pred HHHHHHHHHHHH--hhcCceeeCCCCC--CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCC-
Q 018231 33 EIADIIEHEKAR--QWKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRL- 107 (359)
Q Consensus 33 ~~~~~~~~~~~~--~~~~i~l~~~~~~--~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~- 107 (359)
.+.+++.+..+. ..+.++|..++++ +++.+.+++.+.+.+... ......|+...+..++++++.+++.+..|.
T Consensus 19 ~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~ 96 (409)
T PRK07590 19 EIARRVNAFREANPEAKIIRLGIGDVTQPLPPAVIEAMHKAVDEMGT--AETFRGYGPEQGYDFLREKIAENDYQARGCD 96 (409)
T ss_pred HHHHHHHHHhhhcCCCceEEecCcCCCCCCCHHHHHHHHHHHhcccc--cCCccCCCCCCCCHHHHHHHHHHHHHhcCCc
Confidence 344445444332 2356888877764 578888998887764110 011122333455677877777777666654
Q ss_pred -CCCCCceeEEECCChH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeee-----------eEEEecc
Q 018231 108 -DPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIF-----------FETMPYR 174 (359)
Q Consensus 108 -~~~~~~~~v~~tsG~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~-----------~~~v~~~ 174 (359)
+++ +|++|+|++ ++.. +..+++|||+|++.+|.|+. +...+...|.. +..+ +
T Consensus 97 ~~~~----~I~it~Ga~~al~~-l~~~~~~gd~V~v~~P~Y~~--------~~~~~~~~g~~~~~~~~~~~~~~~~v--~ 161 (409)
T PRK07590 97 ISAD----EIFISDGAKCDTGN-ILDIFGPDNTIAVTDPVYPV--------YVDTNVMAGRTGEANEDGRYSGIVYL--P 161 (409)
T ss_pred CChh----hEEECCCHHHHHHH-HHHhcCCCCEEEEeCCCCcc--------hHHHHHHcCCcccccccccccceeEe--e
Confidence 554 599999999 7664 45677999999999955543 33334445543 4344 4
Q ss_pred cCC-CCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhh---HHHHHHHHHHcCCEEEEeccccccccccCCCC--CCC
Q 018231 175 LNE-STGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIP--SPF 246 (359)
Q Consensus 175 ~~~-~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~---l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~--~~~ 246 (359)
++. +++.+|+++ + ++|+++++ |+| ||...+ +++|.++|++||++||+|+++..-........ ..+
T Consensus 162 ~~~~~~~~~d~~~------~-~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~ 234 (409)
T PRK07590 162 CTAENNFVPELPE------E-KVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEI 234 (409)
T ss_pred cccccCCcccCcc------c-CceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCcchhhC
Confidence 442 234555332 3 79999987 888 896554 66788889999999999999753211111000 001
Q ss_pred CC---ceEEEeCCCCcCC--CCCceEEEEeCC
Q 018231 247 EY---ADVVTTTTHKSLR--GPRGAMIFFRKG 273 (359)
Q Consensus 247 ~~---~D~v~~s~~K~l~--gp~gG~l~~~~~ 273 (359)
.+ .-+++.|++|.++ |.+-|+++++++
T Consensus 235 ~~~~~~vi~~~SfSK~~~~pGlRiG~~i~~~~ 266 (409)
T PRK07590 235 EGARECAIEFRSFSKTAGFTGTRCAYTVVPKE 266 (409)
T ss_pred CCcccceEEEecCccccCCcCceeEEEEcCHH
Confidence 11 2367889999873 444499998773
No 194
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=99.72 E-value=3.4e-16 Score=153.28 Aligned_cols=160 Identities=17% Similarity=0.175 Sum_probs=119.8
Q ss_pred HHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHhh-cCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecc
Q 018231 97 CQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTAL-LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYR 174 (359)
Q Consensus 97 ~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~al-~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 174 (359)
.++++++++|++.+ ++.+++|++ ++.+++.++ .++||+|+++++.|+++...... .+...|.+++.++
T Consensus 117 ~~~~la~l~g~~~~----~v~~~~g~t~~~~~~~~a~~~~~g~~Vlv~~~~~~~~~~~~~~----~~~~~G~~~~~v~-- 186 (447)
T PRK00451 117 YQTMICELTGMDVA----NASMYDGATALAEAALMAVRITKRKKVLVSGAVHPEYREVLKT----YLKGQGIEVVEVP-- 186 (447)
T ss_pred HHHHHHHHhCCCcc----eEEecCcHHHHHHHHHHHHHhcCCCEEEEeCccCHHHHHHHHH----HHHhCCcEEEEec--
Confidence 55788999999875 499999999 776677777 58999999999888766433221 1122466665564
Q ss_pred cCCCCCCCCHHHHHHHhhhhCCcEEEEc-CCCCCChhhHHHHHHHHHHcCCEEEE--eccccccccccCCCCCCCCCceE
Q 018231 175 LNESTGYIDYDQLEKSATLFRPKLIVAG-ASAYARLYDYERIRKVCNKQKAIMLA--DMAHISGLVAAGVIPSPFEYADV 251 (359)
Q Consensus 175 ~~~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n~g~~~~l~~i~~la~~~~~~viv--D~a~~~g~~~~~~~~~~~~~~D~ 251 (359)
.+ ++ .+|++++++.+++ ++++|+++ ++++|.+.|+++|.++|+++|+++++ |.. +.|.+... ..+ ++|+
T Consensus 187 ~~-~~-~~d~~~l~~~i~~-~t~~v~l~~pn~tG~v~~l~~I~~~a~~~~~~~iv~~d~~-~~g~~~~~-~~~---~~D~ 258 (447)
T PRK00451 187 YE-DG-VTDLEALEAAVDD-DTAAVVVQYPNFFGVIEDLEEIAEIAHAGGALFIVGVDPV-SLGLLKPP-GEY---GADI 258 (447)
T ss_pred CC-CC-CCCHHHHHHhcCC-CeEEEEEECCCCCCeeCCHHHHHHHHHHCCCEEEEEcChH-HhccCCCc-ccC---CCCE
Confidence 55 34 8899999999987 89999988 63399999999999999999999998 644 34443211 223 4999
Q ss_pred EEeCCCCc-----CCCCCceEEEEeCCc
Q 018231 252 VTTTTHKS-----LRGPRGAMIFFRKGV 274 (359)
Q Consensus 252 v~~s~~K~-----l~gp~gG~l~~~~~~ 274 (359)
+++|+||+ ++||..|++++++++
T Consensus 259 ~~~s~~k~~~~~~~~Gpg~G~l~~~~~~ 286 (447)
T PRK00451 259 VVGEGQPLGIPLSFGGPYLGFFATRKKL 286 (447)
T ss_pred EEECCCcCCCCCCCCCCCchHHHhhHHH
Confidence 99999996 567755999998864
No 195
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).
Probab=99.72 E-value=2e-16 Score=155.76 Aligned_cols=236 Identities=15% Similarity=0.122 Sum_probs=146.5
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCC----C-----ceeEEECCChH-HHHHHHHhh----cC-------------------
Q 018231 88 EYIDMAESLCQKRALEAFRLDPEK----W-----GVNVQSLSGSP-SNFQVYTAL----LK------------------- 134 (359)
Q Consensus 88 ~~~~~l~~~~~~~~a~~~g~~~~~----~-----~~~v~~tsG~~-a~~~~~~al----~~------------------- 134 (359)
....++|+.+.+|++++++..++. | ...-++|||++ +|+.++.+- +.
T Consensus 125 pa~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~~~~ 204 (522)
T TIGR03799 125 KAFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFAALKH 204 (522)
T ss_pred cchHHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhccccccccccccccchhhhhh
Confidence 446788888999999998531110 0 01256788888 887655432 11
Q ss_pred ---CCCeeeecCCCCCcccCccccccccceeeeee---eeEEEecccCCCCCCCCHHHHHHHhhh---hCCcEEEEc---
Q 018231 135 ---PHDRIMALDLPHGGHLSHGYQTDTKKISAVSI---FFETMPYRLNESTGYIDYDQLEKSATL---FRPKLIVAG--- 202 (359)
Q Consensus 135 ---~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~~d~e~l~~~i~~---~~~k~v~l~--- 202 (359)
++..|++++.+|.++.. .+.+.|. +++.+| .+ +++.+|+++|++.+.+ .+++.++++
T Consensus 205 ~~~~~~~v~~S~~~H~S~~k--------aa~~lglg~~~v~~vp--~d-~~g~~d~~~L~~~i~~~~~~g~~~~~vvata 273 (522)
T TIGR03799 205 YGYDGLAILVSERGHYSLGK--------AADVLGIGRDNLIAIK--TD-ANNRIDVDALRDKCAELAEQNIKPLAIVGVA 273 (522)
T ss_pred ccCCceEEEECCCchHHHHH--------HHHHcCCCcccEEEEE--eC-CCCcCCHHHHHHHHHHHHHCCCCcEEEEEEe
Confidence 23467888877877642 2333444 455565 55 5689999999998863 245544443
Q ss_pred CC-CCCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCC---CCCCCceEEEeCCCCcCCCCCc-eEEEEeCCcch-
Q 018231 203 AS-AYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIP---SPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKE- 276 (359)
Q Consensus 203 ~~-n~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~---~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~- 276 (359)
.+ .+|.+.|+++|+++|+++|+++++|+||+.+.+..+... .++.++|++++++|||+++|.| |+++++++...
T Consensus 274 Gtt~tGaiDpl~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~gle~aDSit~d~HK~l~~P~g~G~llvr~~~~~~ 353 (522)
T TIGR03799 274 GTTETGNIDPLDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQLYVPMGAGMVLFKDPALMS 353 (522)
T ss_pred cCcCCCCcCCHHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHHhcCchhCCEEEEChhhcCCcCcccEEEEEeCHHHHH
Confidence 23 389999999999999999999999999987766443111 1223589999999999999999 99999885210
Q ss_pred hccCCcchhhhHHHhh-ccccCCC-CCCCCcHHHHHHHHHHHHHHhccccchhHhhhccccchhhh
Q 018231 277 INKQGKEVFYDYEEKI-NQAVFPG-LQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFV 340 (359)
Q Consensus 277 ~~~~g~~~~~~~~~~~-~~~~~~~-~~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~~l~~~~~~~ 340 (359)
.+.. .. .+...- .....+. ..||.+... ..+.++++.+-. .+++.+.+..+..-..|.
T Consensus 354 ~~~~-~~---~Yl~~~~~~d~~~~~legsR~~~a-l~lw~aL~~lG~-~G~~~ii~~~~~la~~l~ 413 (522)
T TIGR03799 354 AIEH-HA---EYILRKGSKDLGSHTLEGSRPGMA-MLVYAGLHIIGR-KGYELLIDQSIEKAKYFA 413 (522)
T ss_pred Hhcc-Cc---chhcCCCCCccccceeecCcchHH-HHHHHHHHHHhH-HHHHHHHHHHHHHHHHHH
Confidence 0000 00 000000 0000011 125555444 457888988765 456666666555554443
No 196
>PRK09275 aspartate aminotransferase; Provisional
Probab=99.72 E-value=2.1e-16 Score=155.18 Aligned_cols=203 Identities=13% Similarity=0.106 Sum_probs=133.5
Q ss_pred CceeeCCCC--CCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHH-HHHcCC--CC-CCCceeEEECCC
Q 018231 48 GLELIPSEN--FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRA-LEAFRL--DP-EKWGVNVQSLSG 121 (359)
Q Consensus 48 ~i~l~~~~~--~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~-a~~~g~--~~-~~~~~~v~~tsG 121 (359)
.|+|..++. ++|+.+.+ +.+.+... . |+.+.+..++++++.+++ .+..+. .+ ++ .+|++|+|
T Consensus 102 ~i~l~~g~p~~~~~~~v~e-~~~~~~~~---~------Y~~~~g~~~lreaia~~~~~~~~~~~~~~~~~--~~I~vT~G 169 (527)
T PRK09275 102 AVSYVRDQLGFDADEFVYE-LVDGIIGD---N------YPVPDRMLKHTEKIVKDYLRQEMCGGRPPKGE--FDLFAVEG 169 (527)
T ss_pred HHhhcCCCCCCCCCHHHHH-HHHHHhcC---C------CCCCCCCHHHHHHHHHHHHHhhccCCCCCCCc--CeEEEeCC
Confidence 477776654 45677777 44444321 1 333455666666666544 443332 22 11 26999999
Q ss_pred hH-HHHHHHHh-----hcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCC-CCCCCCHHHHHHHhhhh
Q 018231 122 SP-SNFQVYTA-----LLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNE-STGYIDYDQLEKSATLF 194 (359)
Q Consensus 122 ~~-a~~~~~~a-----l~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~-~~~~~d~e~l~~~i~~~ 194 (359)
++ ++..++.+ +++|||+|++++ |.|..|...+.+.|..++.++++.++ +++.+|++++++.+++
T Consensus 170 a~~al~~~~~aL~~~~ll~pGD~Vlv~~--------P~y~~Y~~~~~l~g~~~~~v~v~~~~~~~f~~d~~~l~~~~~~- 240 (527)
T PRK09275 170 GTAAMCYIFDSLKENGLLKAGDKIALMT--------PIFTPYLEIPELPRYDLEVVHINADEENEWQYPDSELEKLRDP- 240 (527)
T ss_pred HHHHHHHHHHHHhhhhcCCCCCEEEEeC--------CChHHHHHHHHHcCCCeEEEEeecCcccCCCCCHHHHHhhcCC-
Confidence 99 77767765 689999999999 55555544455555556666665543 4589999999998887
Q ss_pred CCcEEEEc-CCC-CCChhh---HHHHHHHHHH--cCCEEEEeccccccccccCCCC-CC-CCCceEEEeCCCCcCC--CC
Q 018231 195 RPKLIVAG-ASA-YARLYD---YERIRKVCNK--QKAIMLADMAHISGLVAAGVIP-SP-FEYADVVTTTTHKSLR--GP 263 (359)
Q Consensus 195 ~~k~v~l~-~~n-~g~~~~---l~~i~~la~~--~~~~vivD~a~~~g~~~~~~~~-~~-~~~~D~v~~s~~K~l~--gp 263 (359)
++|+|+++ |+| ||...+ +++|+++|++ ++++||+|+++..- .. .... .. ....-+++.|.+|.++ |.
T Consensus 241 ~tkai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f-~~-~~~s~~~~~~~~~I~v~SfSK~f~mtG~ 318 (527)
T PRK09275 241 SIKALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTF-VD-DFRSLFAVLPYNTILVYSFSKYFGATGW 318 (527)
T ss_pred CCCEEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhh-cc-cccCHHHhCCCCEEEEeehhhhccCcHh
Confidence 89999987 888 896654 7788888964 59999999997531 11 1100 00 0124588999999873 44
Q ss_pred CceEEEEeCC
Q 018231 264 RGAMIFFRKG 273 (359)
Q Consensus 264 ~gG~l~~~~~ 273 (359)
+-|+++.+++
T Consensus 319 RlG~i~~~~~ 328 (527)
T PRK09275 319 RLGVIALHED 328 (527)
T ss_pred HHhhhhcCch
Confidence 4499998774
No 197
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=99.72 E-value=6.5e-17 Score=154.76 Aligned_cols=154 Identities=17% Similarity=0.207 Sum_probs=113.1
Q ss_pred HHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccC
Q 018231 97 CQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLN 176 (359)
Q Consensus 97 ~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 176 (359)
+++.+++++|++. .+++.||+.++..++.+++++||+|+++...|++.+... .......|.++..++ .+
T Consensus 59 le~~la~l~g~~~-----~~~~~sG~~Ai~~al~al~~~Gd~Vl~~~~~~~~t~~~~----~~~~~~~g~~v~~v~--~~ 127 (380)
T TIGR01325 59 FEERIAALEGAER-----AVATATGMSAIQAALMTLLQAGDHVVASRSLFGSTVGFI----SEILPRFGIEVSFVD--PT 127 (380)
T ss_pred HHHHHHHHhCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEecCCcchHHHHH----HHHHHHhCCEEEEEC--CC
Confidence 4488899999854 355556665888888899999999999886666543221 111223455454443 32
Q ss_pred CCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEe
Q 018231 177 ESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTT 254 (359)
Q Consensus 177 ~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~ 254 (359)
|++++++.+++ ++++|+++ ++| +|...|+++|.++|+++|+++|+|++++.+.....+ .. ++|++++
T Consensus 128 ------d~~~l~~~i~~-~tklV~le~p~np~g~~~dl~~I~~la~~~gi~livD~a~~~~~~~~pl-~~---g~Divv~ 196 (380)
T TIGR01325 128 ------DLNAWEAAVKP-NTKLVFVETPSNPLGELVDIAALAELAHAIGALLVVDNVFATPVLQQPL-KL---GADVVVY 196 (380)
T ss_pred ------CHHHHHHhcCC-CceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccCCch-hh---CCCEEEe
Confidence 78999998887 89999998 777 889999999999999999999999998755432211 12 4899999
Q ss_pred CCCCcCCCCC---ceEEEEeC
Q 018231 255 TTHKSLRGPR---GAMIFFRK 272 (359)
Q Consensus 255 s~~K~l~gp~---gG~l~~~~ 272 (359)
|++|+++|+. ||+++.++
T Consensus 197 S~sK~l~g~g~~~gG~vv~~~ 217 (380)
T TIGR01325 197 SATKHIDGQGRVMGGVIAGSE 217 (380)
T ss_pred eccceecCCCCeEEEEEEeCH
Confidence 9999998753 47777766
No 198
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=99.72 E-value=5.9e-17 Score=154.75 Aligned_cols=154 Identities=15% Similarity=0.132 Sum_probs=114.9
Q ss_pred HHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccC
Q 018231 97 CQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLN 176 (359)
Q Consensus 97 ~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 176 (359)
+++.++++.|.+. .++++||+.++.+++ ++++|||+|+++++.|++.+.... ..+...|.+++.++ .
T Consensus 55 Le~~la~l~g~~~-----al~~~SG~~Al~~~l-~~l~pGd~Vi~~~~~y~~t~~~~~----~~~~~~gi~v~~vd--~- 121 (380)
T PRK06176 55 LEELIADLEGGVK-----GFAFASGLAGIHAVF-SLFQSGDHVLLGDDVYGGTFRLFD----KVLVKNGLSCTIID--T- 121 (380)
T ss_pred HHHHHHHHhCCCC-----EEEECCHHHHHHHHH-HHcCCCCEEEEcCCChhHHHHHHH----HHHHhcCeEEEEcC--C-
Confidence 4488999999765 488999988776444 678999999999977765543221 11223354443332 2
Q ss_pred CCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEe
Q 018231 177 ESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTT 254 (359)
Q Consensus 177 ~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~ 254 (359)
.|++++++.+++ ++++|+++ |+| +|.+.|+++|.++|+++|+++|+|++++.+...... .. ++|++++
T Consensus 122 -----~d~e~l~~ai~~-~t~lV~lesP~Nptg~~~di~~I~~la~~~gi~vivD~t~a~~~~~~p~-~~---gaDivv~ 191 (380)
T PRK06176 122 -----SDLSQIKKAIKP-NTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFATPYYQNPL-LL---GADIVVH 191 (380)
T ss_pred -----CCHHHHHHhcCc-CceEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEECCccccccCCcc-cc---CCCEEEe
Confidence 289999999987 89999987 888 889999999999999999999999998765432211 12 5999999
Q ss_pred CCCCcCCCCC---ceEEEEeCC
Q 018231 255 TTHKSLRGPR---GAMIFFRKG 273 (359)
Q Consensus 255 s~~K~l~gp~---gG~l~~~~~ 273 (359)
|++|+++|+. ||+++++++
T Consensus 192 S~tK~l~g~~d~~gG~vv~~~~ 213 (380)
T PRK06176 192 SGTKYLGGHSDVVAGLVTTNNE 213 (380)
T ss_pred cCceeccCCccceeeEEEecHH
Confidence 9999998875 477777653
No 199
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=99.72 E-value=3.4e-16 Score=141.99 Aligned_cols=202 Identities=18% Similarity=0.116 Sum_probs=146.8
Q ss_pred cCceeeCCCC------CCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCC------CCCCCce
Q 018231 47 KGLELIPSEN------FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRL------DPEKWGV 114 (359)
Q Consensus 47 ~~i~l~~~~~------~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~------~~~~~~~ 114 (359)
..|.|..|++ .+++++.+|+.+.+..+..+||..+ .+... +|+.++++++- +++
T Consensus 62 ~iipl~~GDPsv~~~~~ts~~a~~Av~~al~Sgk~N~Yaps------~G~~~----AR~AVAeYl~~~l~~kl~a~---- 127 (447)
T KOG0259|consen 62 PILPLGHGDPSVYPCFRTSQEAEQAVVDALRSGKGNGYAPS------VGILP----ARRAVAEYLNRDLPNKLTAD---- 127 (447)
T ss_pred eeccCCCCCCCccccccCCHHHHHHHHHHHhcCCCCCcCCc------cccHH----HHHHHHHHhhcCCCCccCcC----
Confidence 3466765544 3689999999999988665565444 33333 44566666332 333
Q ss_pred eEEECCChH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhh
Q 018231 115 NVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL 193 (359)
Q Consensus 115 ~v~~tsG~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~ 193 (359)
.|++|+|.+ |+..++.++.+||..||++. |+|+.|...+...+.+++...+ +.+.+|.+|++.+|+.+++
T Consensus 128 DV~ltsGC~qAIe~~i~~LA~p~aNILlPr--------PGfp~Y~~~a~~~~lEVR~ydl-LPe~~weIDL~~veal~DE 198 (447)
T KOG0259|consen 128 DVVLTSGCSQAIELAISSLANPGANILLPR--------PGFPLYDTRAIYSGLEVRYYDL-LPEKDWEIDLDGVEALADE 198 (447)
T ss_pred ceEEeccchHHHHHHHHHhcCCCCceecCC--------CCCchHHHhhhhcCceeEeecc-cCcccceechHHHHHhhcc
Confidence 599999999 99999999999999999988 7777777667777877766655 3436899999999999998
Q ss_pred hCCcEEEEc-CCC-CCCh---hhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCC----C-ceEEEeCCCCcC--C
Q 018231 194 FRPKLIVAG-ASA-YARL---YDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE----Y-ADVVTTTTHKSL--R 261 (359)
Q Consensus 194 ~~~k~v~l~-~~n-~g~~---~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~----~-~D~v~~s~~K~l--~ 261 (359)
+|.++++. |+| +|.+ .-+++|+++|+++++++|.|+++.--++ .+....+.+ - --+.+++.+|.+ .
T Consensus 199 -NT~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIaDEVY~~~vf-g~~pfvpmg~fssiVPVitlggisKrW~VP 276 (447)
T KOG0259|consen 199 -NTVAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVF-GDKPFVPMGKFSSIVPVITLGGISKRWIVP 276 (447)
T ss_pred -CeeEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEehhhcceeec-CCCCccchhhccccCceEeecccccccccC
Confidence 88877765 888 8844 4588999999999999999999643222 222222222 1 135677788954 4
Q ss_pred CCCceEEEEeCC
Q 018231 262 GPRGAMIFFRKG 273 (359)
Q Consensus 262 gp~gG~l~~~~~ 273 (359)
|.+-|.+++.+.
T Consensus 277 GWRlGWi~~hD~ 288 (447)
T KOG0259|consen 277 GWRLGWIALHDP 288 (447)
T ss_pred CceeeeEEEecc
Confidence 666699999985
No 200
>PRK08114 cystathionine beta-lyase; Provisional
Probab=99.72 E-value=4.8e-17 Score=154.91 Aligned_cols=159 Identities=11% Similarity=0.036 Sum_probs=121.3
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeee
Q 018231 88 EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIF 167 (359)
Q Consensus 88 ~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~ 167 (359)
+..+.+| +.++++-|.+. .+++.||+.|+.+++.+++++||+|+++...|++..... .......|.+
T Consensus 62 Pt~~~le----~~la~LEg~~~-----a~~~~SGmaAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~----~~~l~~~Gi~ 128 (395)
T PRK08114 62 LTHFSLQ----EAMCELEGGAG-----CALYPCGAAAVANAILAFVEQGDHVLMTGTAYEPTQDFC----SKILSKLGVT 128 (395)
T ss_pred hhHHHHH----HHHHHHhCCCe-----EEEEhHHHHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHH----HHHHHhcCcE
Confidence 4456555 78888888764 488888888888788899999999999876666543321 1112223555
Q ss_pred eEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhhHHHHHHHHHHcC--CEEEEeccccccccccCCCC
Q 018231 168 FETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQK--AIMLADMAHISGLVAAGVIP 243 (359)
Q Consensus 168 ~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~l~~i~~la~~~~--~~vivD~a~~~g~~~~~~~~ 243 (359)
+..++ . .|.+.+++++++ +||+|++. ++| ++.+.|+++|+++|+++| +++++|++|+.+.. .+..+
T Consensus 129 v~~vd--~------~d~~~l~~~l~~-~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~-~~pl~ 198 (395)
T PRK08114 129 TTWFD--P------LIGADIAKLIQP-NTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGVL-FKALD 198 (395)
T ss_pred EEEEC--C------CCHHHHHHhcCC-CceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCccccc-cCHHH
Confidence 54442 2 278999999987 89999997 888 889999999999999984 99999999988776 55555
Q ss_pred CCCCCceEEEeCCCCcCCCCCc---eEEEEeC
Q 018231 244 SPFEYADVVTTTTHKSLRGPRG---AMIFFRK 272 (359)
Q Consensus 244 ~~~~~~D~v~~s~~K~l~gp~g---G~l~~~~ 272 (359)
++ +|++++|+||+++|+.. |+++.++
T Consensus 199 ~G---aDivv~S~tKyl~Ghsdv~~G~v~~~~ 227 (395)
T PRK08114 199 FG---IDISIQAGTKYLVGHSDAMIGTAVANA 227 (395)
T ss_pred cC---CcEEEEcCcccccCCCcceeEEEEcCH
Confidence 55 99999999999999853 7666655
No 201
>PLN02509 cystathionine beta-lyase
Probab=99.72 E-value=1.1e-16 Score=155.37 Aligned_cols=155 Identities=17% Similarity=0.176 Sum_probs=113.6
Q ss_pred HHHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEeccc
Q 018231 96 LCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL 175 (359)
Q Consensus 96 ~~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 175 (359)
.+.++++++.|.+. .+++++|..++. ++..++++||+|+++++.|+++..... ..+...|+.++.++ .
T Consensus 137 aLE~~lA~leg~e~-----ai~~~SG~aAi~-~il~ll~~GD~VI~~~~~y~~t~~ll~----~~l~~~G~~v~~vd--~ 204 (464)
T PLN02509 137 ALESLLAKLDKADR-----AFCFTSGMAALS-AVTHLIKNGEEIVAGDDVYGGSDRLLS----QVVPRSGVVVKRVN--T 204 (464)
T ss_pred HHHHHHHHHhCCCE-----EEEeCcHHHHHH-HHHHHhCCCCEEEEcCCchhhHHHHHH----HHHHHCCeEEEEeC--C
Confidence 35588888888654 366677665655 445679999999999977765432111 11223354444332 2
Q ss_pred CCCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEE
Q 018231 176 NESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVT 253 (359)
Q Consensus 176 ~~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~ 253 (359)
.|++++++.+++ +||+|+++ ++| +|.+.|+++|+++|+++|+++|+|++|+.+...... .. ++|+++
T Consensus 205 ------~d~e~l~~ai~~-~TklV~lesPsNPtG~i~Dl~~I~~lAk~~g~~lIVD~A~a~~~~~~pl-~~---gaDivv 273 (464)
T PLN02509 205 ------TNLDEVAAAIGP-QTKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNSIMSPVLSRPL-EL---GADIVM 273 (464)
T ss_pred ------CCHHHHHHhCCc-CCeEEEEECCCCCCCCHHHHHHHHHHHHHcCCEEEEECCccccccCChh-hc---CCcEEE
Confidence 278999999987 89999998 888 899999999999999999999999999877653221 12 489999
Q ss_pred eCCCCcCCCCC---ceEEEEeCC
Q 018231 254 TTTHKSLRGPR---GAMIFFRKG 273 (359)
Q Consensus 254 ~s~~K~l~gp~---gG~l~~~~~ 273 (359)
+|++|+++|+. ||+++++++
T Consensus 274 ~S~tK~l~G~gdv~gG~v~~~~~ 296 (464)
T PLN02509 274 HSATKFIAGHSDVMAGVLAVKGE 296 (464)
T ss_pred ecCcccccCCCccceeEEEeccH
Confidence 99999998865 478877764
No 202
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=99.72 E-value=8.9e-17 Score=153.78 Aligned_cols=154 Identities=19% Similarity=0.149 Sum_probs=114.1
Q ss_pred HHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEeccc
Q 018231 97 CQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL 175 (359)
Q Consensus 97 ~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 175 (359)
++++++++.|.+ .+++++|++ ++..++.++++|||+|+++++.|++.+...... ....+.++..+
T Consensus 57 L~~~lA~l~g~~------~~i~~~sg~~Ai~~~l~~l~~~GD~Vl~~~~~y~~~~~~~~~~----~~~~gi~v~~v---- 122 (386)
T PRK08045 57 VQRALAELEGGA------GAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSL----AKRGCYRVLFV---- 122 (386)
T ss_pred HHHHHHHHhCCC------eEEEECCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHH----HhhCCeEEEEe----
Confidence 448899998854 267777767 888788899999999999997777544322111 11112223222
Q ss_pred CCCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEE
Q 018231 176 NESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVT 253 (359)
Q Consensus 176 ~~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~ 253 (359)
+ ..|++++++.+++ ++++|+++ |+| +|.+.|+++|.++|+++|+++++|++++.+.....+ .. ++|+++
T Consensus 123 d----~~d~e~l~~~l~~-~tklV~l~sP~NPtG~v~di~~I~~ia~~~g~~vivDeay~~~~~~~pl-~~---gaDivv 193 (386)
T PRK08045 123 D----QGDEQALRAALAE-KPKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLSPALQNPL-AL---GADLVL 193 (386)
T ss_pred C----CCCHHHHHHhccc-CCeEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCccccCCch-hh---CCCEEE
Confidence 2 2489999999987 89999998 888 899999999999999999999999998766443221 12 589999
Q ss_pred eCCCCcCCCCCc---eEEEEeCC
Q 018231 254 TTTHKSLRGPRG---AMIFFRKG 273 (359)
Q Consensus 254 ~s~~K~l~gp~g---G~l~~~~~ 273 (359)
.|++|+++|+.+ |+++++++
T Consensus 194 ~S~tK~l~G~~d~~~G~vi~~~~ 216 (386)
T PRK08045 194 HSCTKYLNGHSDVVAGVVIAKDP 216 (386)
T ss_pred eecceeccCCCCceeEEEEeCcH
Confidence 999999998874 77777553
No 203
>PRK13393 5-aminolevulinate synthase; Provisional
Probab=99.72 E-value=4.6e-16 Score=150.41 Aligned_cols=224 Identities=17% Similarity=0.151 Sum_probs=146.5
Q ss_pred CcHHHHHHHHhhhhccCCCCCCCCcc-cCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhhcC--
Q 018231 58 TSVSVMQAVGSVMTNKYSEGYPGARY-YGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLK-- 134 (359)
Q Consensus 58 ~~~~v~~al~~~~~~~~~~g~~~~~~-~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al~~-- 134 (359)
..|+|++++.+.+.. +..+..+++. ++..+...+ +++.+++++|.+. .++++||++++..++.++..
T Consensus 60 ~~p~v~~a~~~~~~~-~~~~~~~s~~~~~~~~~~~~----le~~la~~~g~~~-----~~~~~SG~~An~~ai~~l~~~~ 129 (406)
T PRK13393 60 QHPAVLAAMHEALDT-CGAGAGGTRNISGTNHYHVL----LEAELADLHGKEA-----ALLFTSGYVSNWAALSTLGSRL 129 (406)
T ss_pred CCHHHHHHHHHHHHH-cCCCCcccccccCChHHHHH----HHHHHHHHhCCCc-----EEEeCCcHHHHHHHHHHhhcCC
Confidence 378999999998875 4223222222 122222333 5588999999743 59999998898888887755
Q ss_pred CCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhh---hCCcEEEEc-CCC-CCCh
Q 018231 135 PHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL---FRPKLIVAG-ASA-YARL 209 (359)
Q Consensus 135 ~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~---~~~k~v~l~-~~n-~g~~ 209 (359)
+||.|++....|++...+. ...+.+...++ . .|++++++.++. .++++|+++ +.| +|.+
T Consensus 130 ~g~~I~~~~~~H~s~~~~~--------~~~g~~~~~~~--~------~d~~~l~~~l~~~~~~~~~~v~~~~v~~~~G~~ 193 (406)
T PRK13393 130 PGCVILSDELNHASMIEGI--------RHSRAEKRIFR--H------NDPADLERKLSDLDPHRPKLVAFESVYSMDGDI 193 (406)
T ss_pred CCCEEEEccchhHHHHHHH--------HHcCCeEEEeC--C------CCHHHHHHHHHhccCCCCEEEEEcCCCCCCCch
Confidence 7888887777777665432 22343333232 2 277788777652 256788887 555 8999
Q ss_pred hhHHHHHHHHHHcCCEEEEeccccccccc-cCC---CCCCCC-CceEEEeCCCCcCCCCCceEEEEeCCcchhccCCcch
Q 018231 210 YDYERIRKVCNKQKAIMLADMAHISGLVA-AGV---IPSPFE-YADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEV 284 (359)
Q Consensus 210 ~~l~~i~~la~~~~~~vivD~a~~~g~~~-~~~---~~~~~~-~~D~v~~s~~K~l~gp~gG~l~~~~~~~~~~~~g~~~ 284 (359)
.|+++|.++|+++|+++|+|++|+.|.+. .+. ...+.. ..|+++.+++|+++. .||+++.++
T Consensus 194 ~~l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~~~~~~~~~~~~i~~~tlsKa~g~-~GG~~~~~~------------ 260 (406)
T PRK13393 194 APIAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGIAEREGLADRLTIIEGTLAKAFGV-MGGYITGSA------------ 260 (406)
T ss_pred hCHHHHHHHHHHcCCEEEEECCccccccCCCCCchhhhcCCCCCCeEEEEeCchhhcc-cCceeeCCH------------
Confidence 99999999999999999999999877642 111 111111 368998999999854 468887765
Q ss_pred hhhHHHhhccccCCCCC-CCCcHHHHHHHHHHHHHHhcc
Q 018231 285 FYDYEEKINQAVFPGLQ-GGPHNHTITGLAVALKQVCTL 322 (359)
Q Consensus 285 ~~~~~~~~~~~~~~~~~-gt~~~~~i~al~~Al~~~~~~ 322 (359)
++.+.+.....+..+ ++.+....+++.++++.+.+.
T Consensus 261 --~~~~~l~~~~~~~~~t~~~~p~~~aa~~aaL~~~~~~ 297 (406)
T PRK13393 261 --ALCDFIRSFASGFIFTTSLPPAVAAGALASVRHLKAS 297 (406)
T ss_pred --HHHHHHHHhCcCceecCccCHHHHHHHHHHHHHHhhC
Confidence 444444332222222 455666677888889887654
No 204
>PRK07050 cystathionine beta-lyase; Provisional
Probab=99.71 E-value=1.2e-16 Score=153.42 Aligned_cols=154 Identities=14% Similarity=0.039 Sum_probs=115.8
Q ss_pred HHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEeccc
Q 018231 97 CQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL 175 (359)
Q Consensus 97 ~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 175 (359)
+++.+++++|.+. +++++|++ ++.+++.++++|||+|+++++.|++...... ......|+++..+ +.
T Consensus 70 Le~~lA~l~g~~~------~l~~~sgt~Ai~~~l~al~~~GD~Vl~~~~~y~~~~~~~~----~~~~~~Gi~v~~v--d~ 137 (394)
T PRK07050 70 LAQRLAEIEGGRH------ALLQPSGLAAISLVYFGLVKAGDDVLIPDNAYGPNRDHGE----WLARDFGITVRFY--DP 137 (394)
T ss_pred HHHHHHHHhCCCe------EEEeccHHHHHHHHHHHHhCCCCEEEEecCCcccHHHHHH----HHHHhcCeEEEEE--CC
Confidence 4478999999753 77877777 8888899999999999999988875532111 1122345545433 22
Q ss_pred CCCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEE
Q 018231 176 NESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVT 253 (359)
Q Consensus 176 ~~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~ 253 (359)
. +.+++++.+++ +||+|+++ |+| ++...++++|.++|+++|+++++|++|+.+...... .. |+|+++
T Consensus 138 ~------~~~~l~~~i~~-~tklV~le~p~Np~~~~~di~~I~~ia~~~gi~livD~a~a~~~~~~~l-~~---GaDi~v 206 (394)
T PRK07050 138 L------IGAGIADLIQP-NTRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAIDNTYSAGLAFKPF-EH---GVDISV 206 (394)
T ss_pred C------CHHHHHHhcCC-CCeEEEEECCCCCCccHhhHHHHHHHHHHcCCEEEEECCcccccccCHH-Hc---CCeEEE
Confidence 2 45788888887 89999998 777 788999999999999999999999999887653221 12 489999
Q ss_pred eCCCCcCCCCC---ceEEEEeCC
Q 018231 254 TTTHKSLRGPR---GAMIFFRKG 273 (359)
Q Consensus 254 ~s~~K~l~gp~---gG~l~~~~~ 273 (359)
.|.+|+++|.. ||+++++++
T Consensus 207 ~S~tK~~~g~~~~~gG~v~~~~~ 229 (394)
T PRK07050 207 QALTKYQSGGSDVLMGATITADA 229 (394)
T ss_pred EECCceecCCCCeeEEEEEECCH
Confidence 99999997654 577777664
No 205
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=99.71 E-value=1.3e-16 Score=152.47 Aligned_cols=154 Identities=19% Similarity=0.154 Sum_probs=114.9
Q ss_pred HHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEeccc
Q 018231 97 CQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL 175 (359)
Q Consensus 97 ~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 175 (359)
+++.++++.|.+ ++++++|++ ++..++.+++++||+|+++.+.|++.+.....+ ....+..+..+
T Consensus 56 le~~lA~l~g~~------~v~~~~gg~~Ai~~~l~all~~GD~Vl~~~p~y~~~~~~~~~~----~~~~~~~v~~~---- 121 (382)
T TIGR02080 56 LQQALAELEGGA------GAVVTNTGMSAIHLVTTALLGPDDLLVAPHDCYGGTYRLLNAL----AKKGCFRVLFV---- 121 (382)
T ss_pred HHHHHHHHhCCC------cEEEEcCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHH----HhhcCeEEEEE----
Confidence 447888888853 378888888 888889999999999999998887654322111 11112223222
Q ss_pred CCCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEE
Q 018231 176 NESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVT 253 (359)
Q Consensus 176 ~~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~ 253 (359)
+ ..|++++++++++ +||+|+++ |+| +|...|+++|.++|+++|+++++|++++.+...... .. ++|+++
T Consensus 122 d----~~d~~~l~~ai~~-~tklV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~~pl-~~---gaDivv 192 (382)
T TIGR02080 122 D----QGDEQALRAALAQ-KPKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLSPALQNPL-AL---GADLVL 192 (382)
T ss_pred C----CCCHHHHHHhcCc-CceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCcccccCCch-hh---CCCEEE
Confidence 1 1389999999987 89999998 888 899999999999999999999999999766543221 11 489999
Q ss_pred eCCCCcCCCCCc---eEEEEeCC
Q 018231 254 TTTHKSLRGPRG---AMIFFRKG 273 (359)
Q Consensus 254 ~s~~K~l~gp~g---G~l~~~~~ 273 (359)
+|++|+++|+.+ |+++++++
T Consensus 193 ~S~sK~l~G~~~~~~G~i~~~~~ 215 (382)
T TIGR02080 193 HSCTKYLNGHSDVIAGAVIAKDP 215 (382)
T ss_pred eecceeccCCCCceeEEEEeCCH
Confidence 999999987664 77777664
No 206
>PRK15029 arginine decarboxylase; Provisional
Probab=99.71 E-value=9.3e-17 Score=162.51 Aligned_cols=201 Identities=18% Similarity=0.093 Sum_probs=145.1
Q ss_pred HHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEeccc
Q 018231 97 CQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL 175 (359)
Q Consensus 97 ~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 175 (359)
+++..++.||++. ..++++|+| +|.+++.+++++||+|++....|.|++. ++.+.|+..+.+.-..
T Consensus 210 Aq~~aA~~fgA~~-----t~FlvNGST~gn~a~i~a~~~~gd~Vlv~RN~HKSv~~--------al~L~ga~Pvyl~P~~ 276 (755)
T PRK15029 210 SEKYAARVFGADR-----SWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQ--------GLILTGAKPVYMVPSR 276 (755)
T ss_pred HHHHHHHHhCCCc-----EEEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHHH--------HHHHcCCeEEEecccc
Confidence 6688999999986 488899999 9998999999999999999988877765 5557787776664333
Q ss_pred CCCC---CCCC-----HHHHHHHhhhh-CCc--------EEEEc-CCCCCChhhHHHHHHHHHHcCCEEEEecccccccc
Q 018231 176 NEST---GYID-----YDQLEKSATLF-RPK--------LIVAG-ASAYARLYDYERIRKVCNKQKAIMLADMAHISGLV 237 (359)
Q Consensus 176 ~~~~---~~~d-----~e~l~~~i~~~-~~k--------~v~l~-~~n~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~ 237 (359)
+ +. +.++ ++.+++++.++ .+| +++++ |+-+|...++++|+++|++++++|++|+||++...
T Consensus 277 ~-~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~ 355 (755)
T PRK15029 277 N-RYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYAR 355 (755)
T ss_pred c-ccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCCCcceeeCHHHHHHHHHhcCCeEEEECccccccc
Confidence 2 21 2344 89999988652 123 78887 55589999999999999999999999999975432
Q ss_pred ccC-CCC-CCC-------CCce-EEEeCCCCcCCCCCc-eEEEEeCCcchhccCCcchhhhHHHhhccccCCCCCCCCcH
Q 018231 238 AAG-VIP-SPF-------EYAD-VVTTTTHKSLRGPRG-AMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHN 306 (359)
Q Consensus 238 ~~~-~~~-~~~-------~~~D-~v~~s~~K~l~gp~g-G~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gt~~~ 306 (359)
..+ +.. ..+ .|+| +++.|.||++++... ++|.+++.-.. .+ .++++....-....+|++
T Consensus 356 F~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL~alTQaS~LHv~~~~~~---------id-~~r~~~~l~~~qSTSPSY 425 (755)
T PRK15029 356 FNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGA---------IN-FSRFNQAYMMHATTSPLY 425 (755)
T ss_pred cCccccccccccccccccCCCceEEEEchhhcccchhhhhhheeCCCccc---------cC-HHHHHHHHHHHcCCCcHH
Confidence 211 111 222 3688 999999999988776 67777553000 01 123333221112478999
Q ss_pred HHHHHHHHHHHHHhc
Q 018231 307 HTITGLAVALKQVCT 321 (359)
Q Consensus 307 ~~i~al~~Al~~~~~ 321 (359)
+.++++..|..++..
T Consensus 426 ~LmASLD~ar~~m~~ 440 (755)
T PRK15029 426 AICASNDVAVSMMDG 440 (755)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999998885
No 207
>PRK10534 L-threonine aldolase; Provisional
Probab=99.71 E-value=1.4e-16 Score=149.86 Aligned_cols=198 Identities=15% Similarity=0.180 Sum_probs=123.9
Q ss_pred ceeeCCCCC-CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChHHHHH
Q 018231 49 LELIPSENF-TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQ 127 (359)
Q Consensus 49 i~l~~~~~~-~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~ 127 (359)
|+|.+++++ ++|.+++++.+..... ..|+......++ ++.+++++|+++ .+++++|+.++..
T Consensus 2 ~~~~~~~~~~p~~~~~~a~~~~~~~~--------~~Y~~~~~~~~L----~~~la~~~g~~~-----~~v~~~g~~a~~~ 64 (333)
T PRK10534 2 IDLRSDTVTRPSRAMLEAMMAAPVGD--------DVYGDDPTVNAL----QDYAAELSGKEA-----ALFLPTGTQANLV 64 (333)
T ss_pred cccccccCCCCCHHHHHHHHhccCCC--------cccCCCHHHHHH----HHHHHHHhCCCe-----EEEeCchHHHHHH
Confidence 567777775 6788888887644331 112222334444 478899999876 3555555557776
Q ss_pred HHHhhcCCCCeeeecCCCCCcccCccccccccceeeee-eeeEEEecccCCCCCCCCHHHHHHHhhhh-----CCcEEEE
Q 018231 128 VYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVS-IFFETMPYRLNESTGYIDYDQLEKSATLF-----RPKLIVA 201 (359)
Q Consensus 128 ~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~v~~~~~~~~~~~d~e~l~~~i~~~-----~~k~v~l 201 (359)
++.+++.+||+|+++.+.|...+.. .++...+ ... ++++.+ +++.+|+++|++++++. ++++|++
T Consensus 65 ~l~~~~~~gd~vi~~~~~~~~~~~~------~~~~~~~~~~~--~~~~~~-~~~~~d~~~l~~~i~~~~~~~~~~~lv~l 135 (333)
T PRK10534 65 ALLSHCERGEEYIVGQAAHNYLYEA------GGAAVLGSIQP--QPIDAA-ADGTLPLDKVAAKIKPDDIHFARTRLLSL 135 (333)
T ss_pred HHHHhcCCCCeeEEechhhhhHhcC------CchHHhcCceE--EeecCC-CCCCCCHHHHHHhhcccCcCcccceEEEE
Confidence 7778899999999876555322111 0111222 233 343455 56899999999988652 4889999
Q ss_pred cCCCCCChhhH---HHHHHHHHHcCCEEEEeccccccccc-cCCCCCCC-CCceEEEeCCCCcCCCCCceEEEEeC
Q 018231 202 GASAYARLYDY---ERIRKVCNKQKAIMLADMAHISGLVA-AGVIPSPF-EYADVVTTTTHKSLRGPRGAMIFFRK 272 (359)
Q Consensus 202 ~~~n~g~~~~l---~~i~~la~~~~~~vivD~a~~~g~~~-~~~~~~~~-~~~D~v~~s~~K~l~gp~gG~l~~~~ 272 (359)
+.+++|.+.+. ++|.++|+++++++++|+++..+... .+...... ...|.++.|++|.++.+.||+++.++
T Consensus 136 ~np~~G~v~~~~~l~~i~~~~~~~~~~lvvDEA~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~~G~~~~~~~ 211 (333)
T PRK10534 136 ENTHNGKVLPREYLKQAWEFTRERNLALHVDGARIFNAVVAYGCELKEITQYCDSFTICLSKGLGTPVGSLLVGNR 211 (333)
T ss_pred ecCCCCeecCHHHHHHHHHHHHHcCCeEEeeHHHHHHHHHHcCCCHHHHHhcCCEEEEEeEcCCCCcccceEEcCH
Confidence 84446866655 45667899999999999997654321 11110000 12466667899988766666676655
No 208
>PRK07671 cystathionine beta-lyase; Provisional
Probab=99.71 E-value=1.3e-16 Score=152.33 Aligned_cols=153 Identities=14% Similarity=0.165 Sum_probs=114.3
Q ss_pred HHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccC
Q 018231 97 CQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLN 176 (359)
Q Consensus 97 ~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 176 (359)
+++.++++.|.+. .++++||+.++.. +.++++|||+|+++++.|++.+.... ......|++++.++ .
T Consensus 55 Le~~lA~l~g~~~-----~~~~~sG~aai~~-~~~~l~~Gd~Viv~~~~y~~~~~~~~----~~~~~~G~~v~~v~--~- 121 (377)
T PRK07671 55 LEELIAVLEGGHA-----GFAFGSGMAAITA-VMMLFSSGDHVILTDDVYGGTYRVMT----KVLNRFGIEHTFVD--T- 121 (377)
T ss_pred HHHHHHHHhCCCc-----eEEeCCHHHHHHH-HHHHhCCCCEEEECCCccchHHHHHH----HHHhcCCeEEEEEC--C-
Confidence 4488999999865 4888898876663 44678999999999977764432111 11223455554442 2
Q ss_pred CCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCC-CceEEE
Q 018231 177 ESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE-YADVVT 253 (359)
Q Consensus 177 ~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~-~~D~v~ 253 (359)
.|++++++++++ +||+|+++ |+| +|...++++|.++|+++|+++++|++++.+.... ++. ++|+++
T Consensus 122 -----~d~~~l~~ai~~-~tklV~le~P~NPtg~~~dl~~I~~la~~~g~~lvvD~a~~~~~~~~-----p~~~g~Divv 190 (377)
T PRK07671 122 -----SNLEEVEEAIRP-NTKAIYVETPTNPLLKITDIKKISTIAKEKGLLTIVDNTFMTPYWQS-----PISLGADIVL 190 (377)
T ss_pred -----CCHHHHHHhcCC-CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCCccccCC-----hhhhCCeEEE
Confidence 289999999987 89999998 888 8899999999999999999999999986543321 222 589999
Q ss_pred eCCCCcCCCCC---ceEEEEeCC
Q 018231 254 TTTHKSLRGPR---GAMIFFRKG 273 (359)
Q Consensus 254 ~s~~K~l~gp~---gG~l~~~~~ 273 (359)
+|++|+++|+. +|+++++++
T Consensus 191 ~S~sK~l~G~~~~~~G~~v~~~~ 213 (377)
T PRK07671 191 HSATKYLGGHSDVVAGLVVVNSP 213 (377)
T ss_pred ecCcccccCCccceeEEEEeCcH
Confidence 99999998875 477777664
No 209
>PLN02263 serine decarboxylase
Probab=99.71 E-value=3.8e-15 Score=143.33 Aligned_cols=171 Identities=12% Similarity=0.055 Sum_probs=126.6
Q ss_pred hHHHHHHHHHHHHHHHcCCCCC-CCceeEEECCChH-HHHHHHHhhc--CCCCeeeecCCCCCcccCccccccccceeee
Q 018231 89 YIDMAESLCQKRALEAFRLDPE-KWGVNVQSLSGSP-SNFQVYTALL--KPHDRIMALDLPHGGHLSHGYQTDTKKISAV 164 (359)
Q Consensus 89 ~~~~l~~~~~~~~a~~~g~~~~-~~~~~v~~tsG~~-a~~~~~~al~--~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~ 164 (359)
...++|..+.+|+++++|.+++ .| -.+|||+| +|+.++.+.- .+...+++++..|.++.. .+.+.
T Consensus 130 ~s~~~E~~Vi~wla~L~g~p~~~~~---G~vtsGGTEaNL~Al~aARe~~~~~vvy~S~~aH~Sv~K--------Aa~ll 198 (470)
T PLN02263 130 HSRQFEVGVLDWFARLWEIEKNEYW---GYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFK--------AARMY 198 (470)
T ss_pred hHHHHHHHHHHHHHHHhCCCCCCCe---EEEeCcHHHHHHHHHHHHHhhcCCcEEEEcCCccHHHHH--------HHHhc
Confidence 3678888899999999999763 34 46678878 8887665542 233466767766665532 56677
Q ss_pred eeeeEEEecccCCCCCCCCHHHHHHHhhhhC--CcEEEEc--CCCCCChhhHHHHHHHHHHcCC-----EEEEecccccc
Q 018231 165 SIFFETMPYRLNESTGYIDYDQLEKSATLFR--PKLIVAG--ASAYARLYDYERIRKVCNKQKA-----IMLADMAHISG 235 (359)
Q Consensus 165 g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~--~k~v~l~--~~n~g~~~~l~~i~~la~~~~~-----~vivD~a~~~g 235 (359)
|.+++.|| .+ +++.+|+++|+++|.+.. +-+|+.+ .+++|.+.|+++|.++|+++|+ ++++|+|.+..
T Consensus 199 gi~~~~Vp--~d-~~g~mD~~aL~~aI~~d~~~P~iVvataGTT~~GAiDpi~eIa~i~~~~g~~~~~iwlHVDAA~GG~ 275 (470)
T PLN02263 199 RMECVKVD--TL-VSGEIDCADFKAKLLANKDKPAIINVNIGTTVKGAVDDLDLVIKTLEECGFSQDRFYIHCDGALFGL 275 (470)
T ss_pred CCcceEec--cC-CCCcCcHHHHHHHHHhCCCCcEEEEEEecCCCCcCCCCHHHHHHHHHHcCCccCCeeEEEeccchhh
Confidence 87777776 45 678999999999997632 3344444 4448999999999999999997 99999998665
Q ss_pred ccccCCCC--CCCC-CceEEEeCCCCcCCCCCc-eEEEEeCC
Q 018231 236 LVAAGVIP--SPFE-YADVVTTTTHKSLRGPRG-AMIFFRKG 273 (359)
Q Consensus 236 ~~~~~~~~--~~~~-~~D~v~~s~~K~l~gp~g-G~l~~~~~ 273 (359)
.+|+-... ..+. .+|.++.++|||++.|.+ |+++++++
T Consensus 276 ~lPf~~~~~~~df~~~vDSIsvD~HK~l~~P~~cgvll~R~~ 317 (470)
T PLN02263 276 MMPFVKRAPKVTFKKPIGSVSVSGHKFVGCPMPCGVQITRME 317 (470)
T ss_pred HhhhcccccccCCCcCccEEEECCccccCCCcCEEEEEEehh
Confidence 55542222 2222 499999999999999999 99999974
No 210
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.71 E-value=1.2e-16 Score=154.80 Aligned_cols=152 Identities=15% Similarity=0.135 Sum_probs=113.8
Q ss_pred HHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccC
Q 018231 97 CQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLN 176 (359)
Q Consensus 97 ~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 176 (359)
+.+.++++.|.+. .++++||+.++..++.+++++||+|+++.+.|++.+.... ..+...|.+++.++ ..
T Consensus 69 Le~~lA~leg~~~-----al~~~sG~~Ai~~al~~ll~~GD~Vlv~~~~y~~t~~~~~----~~~~~~Gv~v~~vd--~~ 137 (431)
T PRK08248 69 FEKRIAALEGGIG-----ALAVSSGQAAITYSILNIASAGDEIVSSSSLYGGTYNLFA----HTLPKLGITVKFVD--PS 137 (431)
T ss_pred HHHHHHHHhCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEccCchhhHHHHHH----HHHHhCCEEEEEEC--CC
Confidence 3378999999754 4777777768887888899999999999977765543221 12233465554443 32
Q ss_pred CCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEe
Q 018231 177 ESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTT 254 (359)
Q Consensus 177 ~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~ 254 (359)
|++++++.+++ ++++|+++ ++| +|.+.|+++|.++|+++|+++|+|++++.+....++ .. ++|+++.
T Consensus 138 ------d~e~l~~ai~~-~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t~a~~~~~~pl-~~---gaDivv~ 206 (431)
T PRK08248 138 ------DPENFEAAITD-KTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTFASPYLLRPI-EH---GADIVVH 206 (431)
T ss_pred ------CHHHHHHhcCC-CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCCCCccccCChh-Hc---CCCEEEE
Confidence 89999999987 89999987 778 899999999999999999999999998754332221 22 4999999
Q ss_pred CCCCcCCCCCc--eEEEE
Q 018231 255 TTHKSLRGPRG--AMIFF 270 (359)
Q Consensus 255 s~~K~l~gp~g--G~l~~ 270 (359)
|+||+++|+.. |.+++
T Consensus 207 S~tK~lgg~g~~~Gg~v~ 224 (431)
T PRK08248 207 SATKFIGGHGTSIGGVIV 224 (431)
T ss_pred cCccccCCCCCceEEEEE
Confidence 99999987753 44444
No 211
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=99.71 E-value=7.2e-17 Score=153.03 Aligned_cols=155 Identities=18% Similarity=0.181 Sum_probs=113.7
Q ss_pred HHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHhhcCCC-CeeeecCCCCCcccCccccccccceeeeeeeeEEEecc
Q 018231 97 CQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPH-DRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYR 174 (359)
Q Consensus 97 ~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~al~~~G-d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 174 (359)
+++++++++|++++ +|++|+|++ ++..++.+++++| |+|++++ |.|..+...+...|++++.++
T Consensus 62 l~~~~a~~~g~~~~----~I~~~~Gs~e~i~~~~~~~~~~g~~~vli~~--------P~y~~y~~~~~~~G~~~~~v~-- 127 (351)
T PRK01688 62 VIENYAAYAGVKPE----QVLVSRGADEGIELLIRAFCEPGKDAILYCP--------PTYGMYSVSAETIGVEIRTVP-- 127 (351)
T ss_pred HHHHHHHHhCCCHH----HEEEcCCHHHHHHHHHHHhcCCCCCEEEEcC--------CCHHHHHHHHHHcCCEEEEee--
Confidence 66889999999886 499999999 8887888999997 8999988 455455545566787776665
Q ss_pred cCCCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhhHHHHHHHHHHc--CCEEEEeccccccccccC----CCCCCC
Q 018231 175 LNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQ--KAIMLADMAHISGLVAAG----VIPSPF 246 (359)
Q Consensus 175 ~~~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~l~~i~~la~~~--~~~vivD~a~~~g~~~~~----~~~~~~ 246 (359)
.+ +++.+|++++++.+ + ++++|+++ |+| ||...+.+++.++++.. +++||+|+++.--..... ....+
T Consensus 128 ~~-~~~~~d~~~l~~~~-~-~~~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~~~~vivDEay~~f~~~~s~~~~~~~~~- 203 (351)
T PRK01688 128 TL-DNWQLDLPAIADNL-D-GVKVVYVCSPNNPTGNLINPQDLRTLLELTRGKAIVVADEAYIEFCPQASLAGWLAEYP- 203 (351)
T ss_pred cC-CCCCCCHHHHHHhc-c-CCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhcCCCCChHHHHhhCC-
Confidence 44 45889999999887 4 79999998 888 99888777766665432 689999999742211000 01111
Q ss_pred CCceEEEeCCCCcCCCCCc---eEEEEeC
Q 018231 247 EYADVVTTTTHKSLRGPRG---AMIFFRK 272 (359)
Q Consensus 247 ~~~D~v~~s~~K~l~gp~g---G~l~~~~ 272 (359)
--+++.|++|++ |..| |++++++
T Consensus 204 --n~iv~rSfSK~~-glaGlRiGy~i~~~ 229 (351)
T PRK01688 204 --HLVILRTLSKAF-ALAGLRCGFTLANE 229 (351)
T ss_pred --CEEEEecchHhh-cCHHHHHhHHhCCH
Confidence 348899999977 4444 9999877
No 212
>PLN02672 methionine S-methyltransferase
Probab=99.71 E-value=3.7e-16 Score=162.64 Aligned_cols=206 Identities=10% Similarity=0.037 Sum_probs=141.5
Q ss_pred cCceeeCCCCC--CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-
Q 018231 47 KGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP- 123 (359)
Q Consensus 47 ~~i~l~~~~~~--~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~- 123 (359)
+.|+|..++++ +|+.+++++.+.+.. . .+ .++ ..++++++++++++.+|++.+.. .+|++|+|++
T Consensus 698 ~vI~LsinE~d~ppPp~V~eAi~eal~~-~--~~----s~g----~pdlr~aLa~~la~~~Gv~~d~~-e~IIvt~Gs~e 765 (1082)
T PLN02672 698 SLIHMDVDESFLPVPSAVKASIFESFVR-Q--NI----SES----ETDPRPSILQFIKSNYGFPTDSC-TEFVYGDTSLA 765 (1082)
T ss_pred CEEEEeCCCCCCCCCHHHHHHHHHHHhh-c--CC----CCC----ChHHHHHHHHHHHHHhCcCCCCC-CEEEEeCCHHH
Confidence 56899888875 689999999887654 2 11 011 12345668899999999865310 1599999999
Q ss_pred HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc-
Q 018231 124 SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG- 202 (359)
Q Consensus 124 a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~- 202 (359)
++..++.++++|||.|++++ |.|+.+...+...|+++..+++..+ +++.+|++++++.+++.+.++++++
T Consensus 766 lL~lll~aLl~pGD~VLVp~--------PtY~~Y~~~a~~~Ga~vv~Vpl~~e-~gf~lD~d~Le~al~~~~~~~I~L~n 836 (1082)
T PLN02672 766 LFNKLVLCCVQEGGTLCFPA--------GSNGTYVSAAKFLKANFRRIPTKSS-DGFKLTAKTLASTLETVKKPWVYISG 836 (1082)
T ss_pred HHHHHHHHHcCCCCEEEEeC--------CChHHHHHHHHHcCCEEEEEecccc-cCCCCCHHHHHHHhccCCCCEEEEEC
Confidence 77668899999999999999 5555555567778887777764322 4689999999999865234456665
Q ss_pred CC-C-CCChh---hHHHHHHHHHHcCCEEEEeccccccccccCCC-CCCC-------C-----CceEEEeCCCCcCC--C
Q 018231 203 AS-A-YARLY---DYERIRKVCNKQKAIMLADMAHISGLVAAGVI-PSPF-------E-----YADVVTTTTHKSLR--G 262 (359)
Q Consensus 203 ~~-n-~g~~~---~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~-~~~~-------~-----~~D~v~~s~~K~l~--g 262 (359)
|+ | ||.+. .+++|.++|++||++||+|++++.-....... ...+ . ..-+++.|++|.++ |
T Consensus 837 PnhNPTG~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSKkf~lpG 916 (1082)
T PLN02672 837 PTINPTGLLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLSTELLSGG 916 (1082)
T ss_pred cCCCCcCccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCcHHhhccHH
Confidence 76 8 89654 57788888999999999999985222211100 0000 0 02367779998764 3
Q ss_pred CCceEEEEeCC
Q 018231 263 PRGAMIFFRKG 273 (359)
Q Consensus 263 p~gG~l~~~~~ 273 (359)
.+-|+++++++
T Consensus 917 LRIGylIap~~ 927 (1082)
T PLN02672 917 HEFGFLALNDS 927 (1082)
T ss_pred HHheeEEeCCH
Confidence 33499998763
No 213
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=99.71 E-value=3.7e-16 Score=152.24 Aligned_cols=197 Identities=11% Similarity=0.084 Sum_probs=129.8
Q ss_pred CceeeCCCCC--CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-H
Q 018231 48 GLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-S 124 (359)
Q Consensus 48 ~i~l~~~~~~--~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a 124 (359)
.++|..+... ++|.+.+++.+..... ..|+...+..++++++.+++.+.++ +++ +|++|+|++ +
T Consensus 87 ~i~L~~g~p~~~~~p~~~~~~~~~~~~~--------~~Y~~~~g~~~lr~~ia~~~~~~~~--~~~---~Iiit~G~~~a 153 (431)
T PRK15481 87 LHDLAGGNPDPQRLPDLSRYFARLSRTP--------RLYGDAPVSPELHAWAARWLRDDCP--VAF---EIDLTSGAIDA 153 (431)
T ss_pred hhhhhcCCCChhHhHHHHHHHHHhhhhh--------hhcCCcCCCHHHHHHHHHHHhhccC--CcC---eEEEecCcHHH
Confidence 4666655432 3355666666644321 1233334455666555555544322 222 599999999 8
Q ss_pred HHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc--
Q 018231 125 NFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-- 202 (359)
Q Consensus 125 ~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~-- 202 (359)
+..++.++++|||.|++.+ |.|..+...+...|+++..++ .+ ++ .+|++++++++++ ++|+++++
T Consensus 154 l~~~~~~l~~pgd~Vlv~~--------P~y~~~~~~~~~~g~~~~~v~--~~-~~-g~~~~~l~~~~~~-~~k~i~~~p~ 220 (431)
T PRK15481 154 IERLLCAHLLPGDSVAVED--------PCFLSSINMLRYAGFSASPVS--VD-AE-GMQPEKLERALAQ-GARAVILTPR 220 (431)
T ss_pred HHHHHHHhCCCCCEEEEeC--------CCcHHHHHHHHHcCCeEEeec--cC-CC-CCCHHHHHHHHhc-CCCEEEECCC
Confidence 8889999999999999999 444444445566777775565 44 22 4899999999977 89988875
Q ss_pred CCC-CCChhhHH---HHHHHHHHc-CCEEEEeccccccccccCCCCCCC-CCceEEEeCCCCcCCCCCc---eEEEEeC
Q 018231 203 ASA-YARLYDYE---RIRKVCNKQ-KAIMLADMAHISGLVAAGVIPSPF-EYADVVTTTTHKSLRGPRG---AMIFFRK 272 (359)
Q Consensus 203 ~~n-~g~~~~l~---~i~~la~~~-~~~vivD~a~~~g~~~~~~~~~~~-~~~D~v~~s~~K~l~gp~g---G~l~~~~ 272 (359)
|+| ||...+.+ +|.++|+++ +++||+|++++.-.........+. ...-+++.|++|.|+ | | |+++.++
T Consensus 221 p~NPTG~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~-~-GlRiG~~i~~~ 297 (431)
T PRK15481 221 AHNPTGCSLSARRAAALRNLLARYPQVLVIIDDHFALLSSSPYHSVIPQTTQRWALIRSVSKALG-P-DLRLAFVASDS 297 (431)
T ss_pred CCCCCCccCCHHHHHHHHHHHHhcCCceEEecCchhhhccCCCCCCCcCCCCCEEEEeeeccccC-C-CceeEEEeCCH
Confidence 677 89777654 899999999 999999999753211100000110 023588999999886 4 4 9988876
No 214
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=99.70 E-value=1.1e-15 Score=148.92 Aligned_cols=212 Identities=11% Similarity=0.093 Sum_probs=141.9
Q ss_pred cCceeeCCCCCC-cHHHHHHHHhhhhcc-CC-CC---CCCCcccCCchhHHHHHHHHHHHHHHHcC----CCCCCCceeE
Q 018231 47 KGLELIPSENFT-SVSVMQAVGSVMTNK-YS-EG---YPGARYYGGNEYIDMAESLCQKRALEAFR----LDPEKWGVNV 116 (359)
Q Consensus 47 ~~i~l~~~~~~~-~~~v~~al~~~~~~~-~~-~g---~~~~~~~~~~~~~~~l~~~~~~~~a~~~g----~~~~~~~~~v 116 (359)
..|+|.-.||.+ .+.+.+.+.+..... +. .+ .....+|.+..+...+++++.+.+.+.+| ++++ +|
T Consensus 48 g~i~l~~aeN~l~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~aiA~~l~~~~~~~~~v~p~----~I 123 (447)
T PLN02607 48 GVIQMGLAENQVSFDLLEEYLKQHPEASSWGGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGKARFDPD----RI 123 (447)
T ss_pred ceEEEechhhhhhHHHHHHHHHhCchhhccccccccccchhhccCCCcchHHHHHHHHHHHHHhcCCCCCcCHH----He
Confidence 359999999865 455555555533210 00 01 11224566667788899888899988876 4554 59
Q ss_pred EECCChH-HHHHHHHhhcCCCCeeeecCCCCCcccCcccccccccee-eeeeeeEEEecccCC-CCCCCCHHHHHHHhhh
Q 018231 117 QSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKIS-AVSIFFETMPYRLNE-STGYIDYDQLEKSATL 193 (359)
Q Consensus 117 ~~tsG~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~v~~~~~~-~~~~~d~e~l~~~i~~ 193 (359)
++|+|++ ++.+++.++++|||.|+++.|.|+++.. .+. ..|++++.++ .+. +++.+|++++++++++
T Consensus 124 vit~G~t~al~~l~~~l~~pGD~Vlv~~P~Y~~f~~--------~~~~~~g~~vv~v~--~~~~~~f~~~~~~le~a~~~ 193 (447)
T PLN02607 124 VLTAGATAANELLTFILADPGDALLVPTPYYPGFDR--------DLRWRTGVKIVPIH--CDSSNNFQVTPQALEAAYQE 193 (447)
T ss_pred EEcCChHHHHHHHHHHhCCCCCEEEEcCCCCcchHH--------HHHhcCCcEEEEEe--CCCCCCCcCCHHHHHHHHHH
Confidence 9999999 8887888889999999999966655432 222 2355554444 442 4567999999998864
Q ss_pred -----hCCcEEEEc-CCC-CCChhh---HHHHHHHHHHcCCEEEEeccccccccccC-CC-------CC---CCCCceEE
Q 018231 194 -----FRPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAG-VI-------PS---PFEYADVV 252 (359)
Q Consensus 194 -----~~~k~v~l~-~~n-~g~~~~---l~~i~~la~~~~~~vivD~a~~~g~~~~~-~~-------~~---~~~~~D~v 252 (359)
.++|+++++ |+| +|...+ +++|.++|++|++++|+|++++....... .. .. ....--++
T Consensus 194 a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~~~f~S~~s~~~~~~~~~~~~~v~v 273 (447)
T PLN02607 194 AEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSASEFVSVAEIVEARGYKGVAERVHI 273 (447)
T ss_pred HHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcccHHHHHhhcCCCCCcCcEEE
Confidence 368888888 988 896654 77888999999999999999864332210 00 00 00112367
Q ss_pred EeCCCCcCC--CCCceEEEEeC
Q 018231 253 TTTTHKSLR--GPRGAMIFFRK 272 (359)
Q Consensus 253 ~~s~~K~l~--gp~gG~l~~~~ 272 (359)
+.|.+|.|+ |.+-|++++.+
T Consensus 274 i~s~SK~fg~~GlRvG~ivs~n 295 (447)
T PLN02607 274 VYSLSKDLGLPGFRVGTIYSYN 295 (447)
T ss_pred EEcchhcCCCCcceEEEEEEcC
Confidence 889999874 33339999854
No 215
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=99.70 E-value=1.2e-15 Score=147.09 Aligned_cols=225 Identities=13% Similarity=0.092 Sum_probs=140.8
Q ss_pred cccChHHHHHHHHHHHH--hhcCceeeCCC---C--CCc--HHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHH
Q 018231 28 EVVDPEIADIIEHEKAR--QWKGLELIPSE---N--FTS--VSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQ 98 (359)
Q Consensus 28 ~~~~~~~~~~~~~~~~~--~~~~i~l~~~~---~--~~~--~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~ 98 (359)
..++++.+..+.....+ ..+.|+|..|. . .+| +.+.+++.+.+.... ...|+...+..++++++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~p~~~~l~~a~~~~~~~~~------~~~Y~~~~G~~~lR~aia 79 (396)
T PRK09257 6 EAAPADPILGLMEAFRADPRPDKVNLGVGVYKDEQGRTPVLRAVKKAEARLLETET------TKNYLPIEGLAAYRQAVQ 79 (396)
T ss_pred CCCCCChHHHHHHHHhhCCCcCcEecceeeEECCCCCEeccHHHHHHHHHhccccc------CCCcCCCCCCHHHHHHHH
Confidence 34455444444433332 23568887663 1 233 677888777654321 112344466778887788
Q ss_pred HHHHHHcCC--CCCCCceeEEECCChH-HHHHHHHhh--cCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEec
Q 018231 99 KRALEAFRL--DPEKWGVNVQSLSGSP-SNFQVYTAL--LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPY 173 (359)
Q Consensus 99 ~~~a~~~g~--~~~~~~~~v~~tsG~~-a~~~~~~al--~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~ 173 (359)
+++.+..+. ++++ ..|++|+|++ ++.+++.++ ++|||+|++++ |.|+.+...+...|.+++.+++
T Consensus 80 ~~~~~~~~~~~~~~~--i~v~iT~Ga~~al~~~~~~l~~~~pGd~Vlv~~--------P~y~~~~~~~~~~g~~~v~v~~ 149 (396)
T PRK09257 80 ELLFGADSPALAAGR--VATVQTPGGTGALRVGADFLKRAFPDAKVWVSD--------PTWPNHRAIFEAAGLEVKTYPY 149 (396)
T ss_pred HHhcCCCCcccccCe--EEEEecCCccHHHHHHHHHHHHhCCCCeEEECC--------CCcccHHHHHHHcCCcEEEEec
Confidence 887665443 4443 1239999999 877676555 58999999999 5554444456677877766654
Q ss_pred ccCCCCCCCCHHHHHHHhhhh--CCcEEEEc-CCC-CCChh---hHHHHHHHHHHcCCEEEEecccccccccc-CCCCCC
Q 018231 174 RLNESTGYIDYDQLEKSATLF--RPKLIVAG-ASA-YARLY---DYERIRKVCNKQKAIMLADMAHISGLVAA-GVIPSP 245 (359)
Q Consensus 174 ~~~~~~~~~d~e~l~~~i~~~--~~k~v~l~-~~n-~g~~~---~l~~i~~la~~~~~~vivD~a~~~g~~~~-~~~~~~ 245 (359)
. +++++.+|++++++.++.. ++++++++ ++| ||... .+++|+++|++|++++|+|+++.. .... +....+
T Consensus 150 ~-~~~~~~~d~~~l~~~~~~~~~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~-l~~~~~~~~~~ 227 (396)
T PRK09257 150 Y-DAATKGLDFDAMLADLSQAPAGDVVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFLDIAYQG-FGDGLEEDAYG 227 (396)
T ss_pred c-ccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccc-cccchHHHHHH
Confidence 1 3245789999999988632 23455556 788 88554 467888999999999999999642 1110 000000
Q ss_pred ------CCCceEEEeCCCCcCC--CCCceEEEE
Q 018231 246 ------FEYADVVTTTTHKSLR--GPRGAMIFF 270 (359)
Q Consensus 246 ------~~~~D~v~~s~~K~l~--gp~gG~l~~ 270 (359)
....-+++.|++|.++ |.+-|++++
T Consensus 228 ~~~~~~~~~~vi~i~SfSK~~~~~GlRiG~~~~ 260 (396)
T PRK09257 228 LRAFAAAGLELLVASSFSKNFGLYGERVGALSV 260 (396)
T ss_pred HHHHHhcCCcEEEEEEcCCcCccccccceeEEE
Confidence 0012478899999874 444499874
No 216
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.70 E-value=1.9e-16 Score=153.18 Aligned_cols=153 Identities=16% Similarity=0.108 Sum_probs=114.4
Q ss_pred HHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccC
Q 018231 97 CQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLN 176 (359)
Q Consensus 97 ~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 176 (359)
+++.++++.|.+. .++++||+.|+.+++.+++++||+|+++...|++.+..... .+...|.++..+ + +
T Consensus 74 Le~~lA~l~g~~~-----av~~sSG~aAi~~al~all~~Gd~Vv~~~~~y~~t~~~~~~----~l~~~Gi~v~~v--d-d 141 (436)
T PRK07812 74 VEQRIAALEGGVA-----ALLLASGQAAETFAILNLAGAGDHIVSSPRLYGGTYNLFHY----TLPKLGIEVSFV--E-D 141 (436)
T ss_pred HHHHHHHHhCCCe-----EEEEccHHHHHHHHHHHHhCCCCEEEEeCCcchHHHHHHHH----HhhcCeEEEEEE--C-C
Confidence 4488999999875 48888888888888899999999999998777655322111 112235444333 1 2
Q ss_pred CCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEe
Q 018231 177 ESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTT 254 (359)
Q Consensus 177 ~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~ 254 (359)
..|++++++.+++ +|++|++. ++| +|.+.|+++|.++|+++|+++|+|++|+.+.....+ .. ++|+++.
T Consensus 142 ----~~d~e~l~~ai~~-~tklV~ie~~sNp~G~v~Dl~~I~~la~~~gi~liVD~t~a~~~~~~pl-~~---GaDivv~ 212 (436)
T PRK07812 142 ----PDDLDAWRAAVRP-NTKAFFAETISNPQIDVLDIPGVAEVAHEAGVPLIVDNTIATPYLIRPL-EH---GADIVVH 212 (436)
T ss_pred ----CCCHHHHHHhCCC-CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccCCch-hc---CCCEEEE
Confidence 1289999999987 89999887 777 899999999999999999999999999876554322 22 5999999
Q ss_pred CCCCcCCCCCc--eEEEE
Q 018231 255 TTHKSLRGPRG--AMIFF 270 (359)
Q Consensus 255 s~~K~l~gp~g--G~l~~ 270 (359)
|+||+++|+.+ |.+++
T Consensus 213 S~tK~lgg~G~~i~G~vv 230 (436)
T PRK07812 213 SATKYLGGHGTAIAGVIV 230 (436)
T ss_pred ecccccCCCCCeEEEEEE
Confidence 99999977654 44444
No 217
>PRK06836 aspartate aminotransferase; Provisional
Probab=99.70 E-value=1e-15 Score=147.43 Aligned_cols=208 Identities=14% Similarity=0.150 Sum_probs=140.8
Q ss_pred cCceeeCCCC--CCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCC--CCCCCceeEEECCCh
Q 018231 47 KGLELIPSEN--FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRL--DPEKWGVNVQSLSGS 122 (359)
Q Consensus 47 ~~i~l~~~~~--~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~--~~~~~~~~v~~tsG~ 122 (359)
..++|..+.+ ++++.+.+++.+.+.... .....|+...+...+++.+++++.+.++. +++ +|++|+|+
T Consensus 34 ~~~~l~~g~p~~~~~~~v~~a~~~~~~~~~----~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~----~i~~t~G~ 105 (394)
T PRK06836 34 NVFDFSLGNPSVPPPAAVKEALRELAEEED----PGLHGYMPNAGYPEVREAIAESLNRRFGTPLTAD----HIVMTCGA 105 (394)
T ss_pred CeEEecCcCCCCCCCHHHHHHHHHHHhcCC----cCcccCCCCCCCHHHHHHHHHHHHHHhCCCCCcC----cEEEeCCh
Confidence 3477765544 357888888887765421 11122333455667776777777766554 554 49999999
Q ss_pred H-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEE
Q 018231 123 P-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA 201 (359)
Q Consensus 123 ~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l 201 (359)
+ ++..++.+++++||.|+++++.|..+ ...+...|.+++.++ .+++++.+|++++++.+++ +++++++
T Consensus 106 ~~al~~~~~~l~~~gd~Vli~~p~~~~~--------~~~~~~~g~~v~~v~--~~~~~~~~d~~~l~~~~~~-~~~~v~~ 174 (394)
T PRK06836 106 AGALNVALKAILNPGDEVIVFAPYFVEY--------RFYVDNHGGKLVVVP--TDTDTFQPDLDALEAAITP-KTKAVII 174 (394)
T ss_pred HHHHHHHHHHhcCCCCEEEEcCCCCccH--------HHHHHHcCCEEEEEe--cCCccCcCCHHHHHhhcCc-CceEEEE
Confidence 9 87778889999999999999655543 223344576665665 4534578999999999987 8999988
Q ss_pred c-CCC-CCChhh---HHHHHHHHHH------cCCEEEEeccccccccccCCCCC--CCCCceEEEeCCCCcCCCC--Cce
Q 018231 202 G-ASA-YARLYD---YERIRKVCNK------QKAIMLADMAHISGLVAAGVIPS--PFEYADVVTTTTHKSLRGP--RGA 266 (359)
Q Consensus 202 ~-~~n-~g~~~~---l~~i~~la~~------~~~~vivD~a~~~g~~~~~~~~~--~~~~~D~v~~s~~K~l~gp--~gG 266 (359)
+ ++| +|...+ +++|.++|++ ||+++|+|+++..-......... ......+++.|.+|.|+.| +-|
T Consensus 175 ~~p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~pGlRiG 254 (394)
T PRK06836 175 NSPNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVPYIFKYYDNSIVVYSFSKSLSLPGERIG 254 (394)
T ss_pred eCCCCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCCCCCChHHccCcEEEEecchhhccCcceeeE
Confidence 7 778 886655 6677888998 89999999997432111100000 0012468999999988533 339
Q ss_pred EEEEeCC
Q 018231 267 MIFFRKG 273 (359)
Q Consensus 267 ~l~~~~~ 273 (359)
++++++.
T Consensus 255 ~~~~~~~ 261 (394)
T PRK06836 255 YIAVNPE 261 (394)
T ss_pred EEecCHH
Confidence 9998763
No 218
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=99.70 E-value=9e-16 Score=145.91 Aligned_cols=193 Identities=14% Similarity=0.044 Sum_probs=124.9
Q ss_pred hcCceeeCCCC--CCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCC-CCCCceeEEECCCh
Q 018231 46 WKGLELIPSEN--FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLD-PEKWGVNVQSLSGS 122 (359)
Q Consensus 46 ~~~i~l~~~~~--~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~-~~~~~~~v~~tsG~ 122 (359)
...++|..+++ ++++.+.+++.+.... . .| +...+..++++++++++.+.+|.+ .+. .+|++|+|+
T Consensus 21 ~~~i~l~~~~p~~~~~~~~~~~~~~~~~~-~--~Y------~~~~G~~~lr~~ia~~~~~~~~~~~~~~--~~I~it~G~ 89 (357)
T TIGR03539 21 DGIVDLSVGTPVDPVPPLIRAALAAAADA-P--GY------PQTWGTPELREAIVDWLERRRGVPGLDP--TAVLPVIGT 89 (357)
T ss_pred CCeEEccCCCCCCCCCHHHHHHHHHHHhh-C--CC------CcccCCHHHHHHHHHHHHHhcCCCCCCc--CeEEEccCh
Confidence 35588876644 4577888888765432 1 22 333556677777888888876643 221 259999999
Q ss_pred H-HHHHHHHhh-cCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEE
Q 018231 123 P-SNFQVYTAL-LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIV 200 (359)
Q Consensus 123 ~-a~~~~~~al-~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~ 200 (359)
+ ++..++.++ +++||.|+++++.|+++ ...+...|++++.+ + |++.+. +.++++++
T Consensus 90 ~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~--------~~~~~~~g~~~~~v----~------~~~~l~----~~~~~~v~ 147 (357)
T TIGR03539 90 KELVAWLPTLLGLGPGDTVVIPELAYPTY--------EVGALLAGATPVAA----D------DPTELD----PVGPDLIW 147 (357)
T ss_pred HHHHHHHHHHHcCCCCCEEEECCCCcHHH--------HHHHHhcCCEEecc----C------ChhhcC----ccCccEEE
Confidence 9 776677777 79999999999655443 22334456544322 2 333332 23789999
Q ss_pred Ec-CCC-CCChh---hHHHHHHHHHHcCCEEEEeccccccccccCCCCCCC--------CCceEEEeCCCCcC--CCCCc
Q 018231 201 AG-ASA-YARLY---DYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPF--------EYADVVTTTTHKSL--RGPRG 265 (359)
Q Consensus 201 l~-~~n-~g~~~---~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~--------~~~D~v~~s~~K~l--~gp~g 265 (359)
++ ++| ||... .+++|.++|++||+++|+|+++.. ....+.....+ ..-.+++.|.+|.+ .|.+.
T Consensus 148 ~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~-~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~R~ 226 (357)
T TIGR03539 148 LNSPGNPTGRVLSVDELRAIVAWARERGAVVASDECYLE-LGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRSNLAGYRA 226 (357)
T ss_pred EeCCCCCcCccCCHHHHHHHHHHHHHcCeEEEEecchhh-hccCCCCccceecccCCCccccEEEEeccccccCCCceeE
Confidence 87 888 88655 467888999999999999999752 11111000000 01248899999986 45555
Q ss_pred eEEEEeC
Q 018231 266 AMIFFRK 272 (359)
Q Consensus 266 G~l~~~~ 272 (359)
|+++.++
T Consensus 227 G~~i~~~ 233 (357)
T TIGR03539 227 GFVAGDP 233 (357)
T ss_pred EEEecCH
Confidence 9998765
No 219
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=99.70 E-value=4.2e-16 Score=148.33 Aligned_cols=206 Identities=15% Similarity=0.141 Sum_probs=132.3
Q ss_pred CceeeCCCCCC------cHHHHHHHHh-hhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCC--CCCCCceeEEE
Q 018231 48 GLELIPSENFT------SVSVMQAVGS-VMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRL--DPEKWGVNVQS 118 (359)
Q Consensus 48 ~i~l~~~~~~~------~~~v~~al~~-~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~--~~~~~~~~v~~ 118 (359)
.|+|..+++.. ++.+++++.+ ....... ..|+...+..++++++.+++.+..|. +++ .+|++
T Consensus 3 ~I~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~---~~i~~ 73 (363)
T PF00155_consen 3 VINLGSNAPLLLSQNPPPPAAIKAAIRGAATSSSF------LGYPPPQGYPELREAIADFLGRRYGVPVDPE---ANILV 73 (363)
T ss_dssp EEESSSSSTSSTTSSHHHHHHHHHHHHHHHHHTGC------TSSTCTTHHHHHHHHHHHHHHHHHTHHTTGG---EGEEE
T ss_pred EEEEECCCCCCcccccchHHHHHHHHHHhhccccc------ccCCCchhhHHHHHHHHHHhhhccCcccccc---eEEEE
Confidence 47777666543 3555666554 2121111 22344466777776665555544444 443 15999
Q ss_pred CCChH-HHHHHHHhh-cCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhh--
Q 018231 119 LSGSP-SNFQVYTAL-LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF-- 194 (359)
Q Consensus 119 tsG~~-a~~~~~~al-~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~-- 194 (359)
++|+. ++..++..+ .++||.|+++++.|+ .+...+...|..+..+++... +++.+|+++|++.+++.
T Consensus 74 ~~G~~~~~~~~~~~~~~~~~~~vlv~~P~y~--------~~~~~~~~~g~~~~~~~~~~~-~~~~~d~~~l~~~l~~~~~ 144 (363)
T PF00155_consen 74 TSGAQAALFLLLRLLKINPGDTVLVPDPCYP--------SYIEAARLLGAEVIPVPLDSE-NDFHLDPEALEEALDELPS 144 (363)
T ss_dssp ESHHHHHHHHHHHHHHSSTTSEEEEEESSST--------HHHHHHHHTTSEEEEEEEEET-TTTEETHHHHHHHHHTSHT
T ss_pred ecccccchhhhhhcccccccccceecCCccc--------cccccccccCceeeecccccc-ccccccccccccccccccc
Confidence 99999 666566666 679999999995444 444455566777666664434 67899999999998863
Q ss_pred ---CCcEEEEc-CCC-CCChhh---HHHHHHHHHHcCCEEEEeccccccccccC-CC--CCCCC-Cc-eEEEeCCCCcCC
Q 018231 195 ---RPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAG-VI--PSPFE-YA-DVVTTTTHKSLR 261 (359)
Q Consensus 195 ---~~k~v~l~-~~n-~g~~~~---l~~i~~la~~~~~~vivD~a~~~g~~~~~-~~--~~~~~-~~-D~v~~s~~K~l~ 261 (359)
++++++++ ++| ||...+ +++|+++|+++|+++|+|++|........ .. ...+. +. .+++.|++|.|+
T Consensus 145 ~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g 224 (363)
T PF00155_consen 145 KGPRPKAVLICNPNNPTGSVLSLEELRELAELAREYNIIIIVDEAYSDLIFGDPDFGPIRSLLDEDDNVIVVGSLSKSFG 224 (363)
T ss_dssp TTETEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTGBSSSSHTHHHHGHHTTTSTEEEEEESTTTTT
T ss_pred cccccceeeecccccccccccccccccchhhhhcccccceeeeeceeccccCCCccCcccccccccccceeeeecccccc
Confidence 45778777 888 896655 55556669999999999999875544321 00 00001 12 489999999874
Q ss_pred CCCc---eEEEEeC
Q 018231 262 GPRG---AMIFFRK 272 (359)
Q Consensus 262 gp~g---G~l~~~~ 272 (359)
.+| |++++++
T Consensus 225 -~~GlRvG~i~~~~ 237 (363)
T PF00155_consen 225 -LPGLRVGYIVAPP 237 (363)
T ss_dssp -SGGGTEEEEEEEH
T ss_pred -ccccccccccchh
Confidence 345 9999966
No 220
>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase. This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).
Probab=99.70 E-value=7.3e-16 Score=151.17 Aligned_cols=205 Identities=15% Similarity=0.165 Sum_probs=129.4
Q ss_pred CceeeCCCC-CCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCC---CCCCCceeEEECCChH
Q 018231 48 GLELIPSEN-FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRL---DPEKWGVNVQSLSGSP 123 (359)
Q Consensus 48 ~i~l~~~~~-~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~---~~~~~~~~v~~tsG~~ 123 (359)
.|+|..++. ..+++.++++.+.+... .|+.. .......++.+++++.+.++. ++++ .+|++|+|++
T Consensus 96 ~i~l~~g~p~~~~~~~~~~~~~~~~~~---~Y~~p-----~g~~~~~e~iv~~y~~~~~~~~~~~~~~--~~V~it~Gat 165 (521)
T TIGR03801 96 IISYVIDQLGFDPDAFLYEMCDGIIGD---NYPVP-----DRMLPHSEKIVHQYLIQEMCGNKPPPGE--FDLFAVEGGT 165 (521)
T ss_pred HHhhcCCCCCCCCCHHHHHHHHHhhcC---CCCCC-----CCCHHHHHHHHHHHHHhhccCCCCCCCc--CeEEEeCCHH
Confidence 467765554 33455566666654321 22211 122445555555677666443 2221 1599999999
Q ss_pred -HHHHHHHh-----hcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCC-CC-----CCCCHHHHHHHh
Q 018231 124 -SNFQVYTA-----LLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNE-ST-----GYIDYDQLEKSA 191 (359)
Q Consensus 124 -a~~~~~~a-----l~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~-~~-----~~~d~e~l~~~i 191 (359)
++..++.+ +++|||+|++++ |.|+.|...+.+.+...+.++++.++ ++ |.+|.+++++++
T Consensus 166 ~al~~~~~~l~~~~ll~pGD~Vlv~~--------P~y~~y~~~~~l~~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~~ 237 (521)
T TIGR03801 166 AAMCYIFDSLKANELLKKGDKIALMT--------PIFTPYLEIPELPRYDFEVVRIKADEMTEDGTHTWQYPDKELEKLR 237 (521)
T ss_pred HHHHHHHHHHhHhhcCCCCCEEEEeC--------CCcHHHHHHHHHhcCCcEEEEeecccccccccccCCCCHHHHHHhc
Confidence 77767766 789999999999 44444443444443334444444432 12 789999999888
Q ss_pred hhhCCcEEEEc-CCC-CCChhh---HHHHHHHHHHc--CCEEEEeccccccccccCCCC-CC-CCCceEEEeCCCCcCC-
Q 018231 192 TLFRPKLIVAG-ASA-YARLYD---YERIRKVCNKQ--KAIMLADMAHISGLVAAGVIP-SP-FEYADVVTTTTHKSLR- 261 (359)
Q Consensus 192 ~~~~~k~v~l~-~~n-~g~~~~---l~~i~~la~~~--~~~vivD~a~~~g~~~~~~~~-~~-~~~~D~v~~s~~K~l~- 261 (359)
++ ++|+++++ |+| ||...+ +++|+++|++| +++||+|++++.- .. +... .. ....-+++.|.+|.++
T Consensus 238 ~~-~~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f-~~-~~~sl~~~~~~~vI~v~SfSK~fg~ 314 (521)
T TIGR03801 238 DP-SIKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTF-VD-DFRSLFAELPYNTIGVYSFSKYFGA 314 (521)
T ss_pred CC-CCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhh-cc-cccchhhhCCCCEEEEEcchhhccC
Confidence 76 89999987 888 896654 77888889987 8999999997521 11 1100 00 0113488999999874
Q ss_pred -CCCceEEEEeCC
Q 018231 262 -GPRGAMIFFRKG 273 (359)
Q Consensus 262 -gp~gG~l~~~~~ 273 (359)
|.+-|+++.+++
T Consensus 315 ~G~RlG~i~~~~~ 327 (521)
T TIGR03801 315 TGWRLGTIALHKD 327 (521)
T ss_pred chhhhhhhhcCch
Confidence 444499998764
No 221
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.70 E-value=2.9e-16 Score=152.22 Aligned_cols=147 Identities=20% Similarity=0.214 Sum_probs=113.2
Q ss_pred HHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccC
Q 018231 97 CQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLN 176 (359)
Q Consensus 97 ~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 176 (359)
+.+.++++.|.+. .+++.||+.++.+++.++++|||+|+++.+.|++....... .+...|..++.++ .+
T Consensus 68 le~~lA~l~g~~~-----al~~~SG~~Ai~~al~all~pGd~VIv~~~~y~~t~~~~~~----~~~~~G~~v~~vd--~~ 136 (427)
T PRK05994 68 LEERVAALEGGTA-----ALAVASGHAAQFLVFHTLLQPGDEFIAARKLYGGSINQFGH----AFKSFGWQVRWAD--AD 136 (427)
T ss_pred HHHHHHHHhCCCc-----EEEEcCHHHHHHHHHHHHhCCCCEEEEecCcchhHHHHHHH----HHHhcCcEEEEEC--CC
Confidence 4488999999875 47888888888888899999999999999888765432211 1222354444342 22
Q ss_pred CCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEe
Q 018231 177 ESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTT 254 (359)
Q Consensus 177 ~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~ 254 (359)
|++++++.+++ +|++|+++ ++| +|.+.|+++|.++|+++|+++|+|++|+.+.....+ .. ++|+++.
T Consensus 137 ------d~~~l~~ai~~-~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~a~a~~~~~~pl-~~---gaDivv~ 205 (427)
T PRK05994 137 ------DPASFERAITP-RTKAIFIESIANPGGTVTDIAAIAEVAHRAGLPLIVDNTLASPYLIRPI-EH---GADIVVH 205 (427)
T ss_pred ------CHHHHHHhcCc-CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCccccccCCcc-cc---CCcEEEE
Confidence 88999999987 89999997 788 889999999999999999999999999866543221 22 5999999
Q ss_pred CCCCcCCCCCc
Q 018231 255 TTHKSLRGPRG 265 (359)
Q Consensus 255 s~~K~l~gp~g 265 (359)
|+||+++|+.+
T Consensus 206 S~tK~lgg~~~ 216 (427)
T PRK05994 206 SLTKFLGGHGN 216 (427)
T ss_pred cCccccCCCCC
Confidence 99999987765
No 222
>PLN02242 methionine gamma-lyase
Probab=99.70 E-value=2.2e-16 Score=152.42 Aligned_cols=160 Identities=13% Similarity=0.074 Sum_probs=113.4
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeee
Q 018231 88 EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIF 167 (359)
Q Consensus 88 ~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~ 167 (359)
....++| +.+++++|.+. .+++.+|+.++..++.+++++||+|+++.+.|+++...... ......|.+
T Consensus 76 Pt~~~LE----~~lA~l~g~~~-----~l~~~sG~~Ai~~al~al~~~GD~Vl~~~~~Y~~~~~~~~~---~~~~~~G~~ 143 (418)
T PLN02242 76 PTVLNLG----RQMAALEGTEA-----AYCTASGMSAISSVLLQLCSSGGHVVASNTLYGGTHALLAH---FLPRKCNIT 143 (418)
T ss_pred hhHHHHH----HHHHHHhCCCe-----EEEEccHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHH---hhhhccCce
Confidence 3345554 88999999875 24444444488889999999999999998666544221110 011223544
Q ss_pred eEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCC
Q 018231 168 FETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP 245 (359)
Q Consensus 168 ~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~ 245 (359)
++.+ +. .|++++++++++.++|+|+++ ++| +|.+.++++|.++|+++|+++|+|++|+.... +....
T Consensus 144 ~~~~--d~------~d~e~l~~~i~~~~tklV~lesp~NPtG~v~dl~~I~~la~~~gi~livDea~~~~~~--~~~~~- 212 (418)
T PLN02242 144 TTFV--DI------TDLEAVKKAVVPGKTKVLYFESISNPTLTVADIPELARIAHEKGVTVVVDNTFAPMVL--SPARL- 212 (418)
T ss_pred EEEc--CC------CCHHHHHHhcCcCCCEEEEEecCCCCCCcccCHHHHHHHHHHhCCEEEEECCCCccCC--CHHHc-
Confidence 3322 22 289999999976349999998 888 89999999999999999999999999854332 21222
Q ss_pred CCCceEEEeCCCCcCCCCC---ceEEEEeC
Q 018231 246 FEYADVVTTTTHKSLRGPR---GAMIFFRK 272 (359)
Q Consensus 246 ~~~~D~v~~s~~K~l~gp~---gG~l~~~~ 272 (359)
++|++++|++|+++|+. ||+++.++
T Consensus 213 --g~divv~S~SK~l~g~g~~~gG~iv~~~ 240 (418)
T PLN02242 213 --GADVVVHSISKFISGGADIIAGAVCGPA 240 (418)
T ss_pred --CCcEEEEeCccccCCCCCceEEEEEcCH
Confidence 48999999999997654 58888766
No 223
>PRK03967 histidinol-phosphate aminotransferase; Provisional
Probab=99.69 E-value=9e-16 Score=144.74 Aligned_cols=222 Identities=16% Similarity=0.073 Sum_probs=144.0
Q ss_pred cCceeeCCCCC--CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-
Q 018231 47 KGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP- 123 (359)
Q Consensus 47 ~~i~l~~~~~~--~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~- 123 (359)
+.|+|..++++ +++.+.+++.+.+......+| +. .+..+ +|+++++++|++++ +|++|+|++
T Consensus 19 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y------~~-~g~~~----lr~~ia~~~~~~~~----~I~~t~G~~~ 83 (337)
T PRK03967 19 YRIWLDKNENPFDLPEELKEEIFEELKRVPFNRY------PH-ITSDP----LREAIAEFYGLDAE----NIAVGNGSDE 83 (337)
T ss_pred ceEEecCCCCCCCCCHHHHHHHHHHhhcCccccC------CC-CCHHH----HHHHHHHHhCcCcc----eEEEcCCHHH
Confidence 45888877765 568899998887643111122 21 23344 44778888888775 499999999
Q ss_pred HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc-
Q 018231 124 SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG- 202 (359)
Q Consensus 124 a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~- 202 (359)
++..++.++ +||+|+++.+.|+ .+...+...|.++..++ .+ +++.+|++++++.+ + ++++++++
T Consensus 84 ~l~~~~~~~--~gd~V~v~~P~y~--------~~~~~~~~~g~~~~~v~--~~-~~~~~d~~~l~~~~-~-~~~~v~~~~ 148 (337)
T PRK03967 84 LISYLVKLF--EGKHIVITPPTFG--------MYSFYAKLNGIPVIDVP--LK-EDFTIDGERIAEKA-K-NASAVFICS 148 (337)
T ss_pred HHHHHHHHh--CCCeEEEeCCChH--------HHHHHHHHcCCeEEEee--cC-CCCCcCHHHHHHhc-c-CCCEEEEeC
Confidence 766565555 7999999995553 23323445676665554 44 45789999998865 3 68888887
Q ss_pred CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCC-CCCCCceEEEeCCCCcCC--CCCceEEEEeCCcchhc
Q 018231 203 ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIP-SPFEYADVVTTTTHKSLR--GPRGAMIFFRKGVKEIN 278 (359)
Q Consensus 203 ~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~-~~~~~~D~v~~s~~K~l~--gp~gG~l~~~~~~~~~~ 278 (359)
|+| ||...+.++|.++++ +++++|+|+++.. ........ .....--+++.|++|.|+ |.+.|++++++
T Consensus 149 P~NPtG~~~~~~~l~~i~~-~~~~ii~De~y~~-~~~~~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~iv~~~------ 220 (337)
T PRK03967 149 PNNPTGNLQPEEEILKVLE-TGKPVVLDEAYAE-FSGKSLIGLIDEYPNLILLRTFSKAFGLAGIRAGYAIANE------ 220 (337)
T ss_pred CCCCCCCCCCHHHHHHHHh-cCCEEEEECchhh-hcccchHHHHhhCCCEEEEecchHhhcchhhhheeeecCH------
Confidence 888 999999999999995 7999999999852 11100000 000012478899999874 34449999876
Q ss_pred cCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHH
Q 018231 279 KQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALK 317 (359)
Q Consensus 279 ~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~ 317 (359)
++.+.+.....+ .+.+.+...++..+|+
T Consensus 221 --------~~i~~~~~~~~~---~~~~~~~q~~~~~~l~ 248 (337)
T PRK03967 221 --------EIIDALYRIKPP---FSLNILTMKIVRLALD 248 (337)
T ss_pred --------HHHHHHHhhcCC---CCCCHHHHHHHHHHHh
Confidence 455554433221 2345555555555553
No 224
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=99.68 E-value=2.3e-15 Score=143.74 Aligned_cols=208 Identities=15% Similarity=0.200 Sum_probs=134.5
Q ss_pred cCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceee
Q 018231 84 YGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISA 163 (359)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~ 163 (359)
|++.....++| +.+++++|.+. .|.+.||+.|+..++...++|||.| +...+-.. .. ..+..
T Consensus 74 Yagd~s~~~LE----~~vAe~lG~e~-----aV~v~sGTaAl~ll~~l~v~pGd~V--p~n~~f~T---t~----ahI~~ 135 (460)
T PRK13237 74 YAGSRNFYHLE----ETVQEYYGFKH-----VVPTHQGRGAENLLSRIAIKPGQYV--PGNMYFTT---TR----YHQEL 135 (460)
T ss_pred hcCCCcHHHHH----HHHHHHHCCCe-----EEEeCCHHHHHHHHHHhCCCCcCEE--CCccchHh---hH----HHHHh
Confidence 44445566666 77888999986 3555566667765555558999975 33222111 11 01233
Q ss_pred eeeeeEEEec-------ccCCCCCCCCHHHHHHHhhhh---CCcEEEEc-CCC-C-CC---hhhHHHHHHHHHHcCCEEE
Q 018231 164 VSIFFETMPY-------RLNESTGYIDYDQLEKSATLF---RPKLIVAG-ASA-Y-AR---LYDYERIRKVCNKQKAIML 227 (359)
Q Consensus 164 ~g~~~~~v~~-------~~~~~~~~~d~e~l~~~i~~~---~~k~v~l~-~~n-~-g~---~~~l~~i~~la~~~~~~vi 227 (359)
.|..+..+.. ..++.++.+|+++|++.|++. +++++.+. ++| . |. ..++++|.++|++||+.||
T Consensus 136 ~Ga~fvDi~~d~a~~~~~~~p~tgnlD~d~Le~~I~~~~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi 215 (460)
T PRK13237 136 NGGIFVDIIIDEAHDAQSDHPFKGNVDLDKLQALIDEVGAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVF 215 (460)
T ss_pred CCcEEEeeecccccccccCCCCCCCcCHHHHHHHhccccCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEE
Confidence 3432222210 112356899999999999762 22334433 566 5 43 3478999999999999999
Q ss_pred Eecccccccccc------CCCCCC--------CCCceEEEeCCCCcCCCCCceEEEEeCCcchhccCCcchhhhHHHhhc
Q 018231 228 ADMAHISGLVAA------GVIPSP--------FEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKIN 293 (359)
Q Consensus 228 vD~a~~~g~~~~------~~~~~~--------~~~~D~v~~s~~K~l~gp~gG~l~~~~~~~~~~~~g~~~~~~~~~~~~ 293 (359)
.|+||++|...+ +....+ +..+|.+++|++|.+.++.||+++++++ ++.++++
T Consensus 216 ~DaAra~gna~fI~~re~~y~~~~i~ei~~e~~s~aD~~t~S~~K~~~~~~GG~i~t~D~-------------eL~~~~r 282 (460)
T PRK13237 216 FDATRCVENAYFIKEREEGYQDKSIKEIVHEMFSYADGCTMSGKKDCLVNIGGFLAMNDE-------------ELFDEAK 282 (460)
T ss_pred EECcchhcChhhhcccccccCCCcHhHHhhhccCcCcEEEEeCCCCCCCCCceEEEECCH-------------HHHHHHH
Confidence 999999884421 111111 2358999999999999999999999996 6776665
Q ss_pred cc--cCCCCC--CCCcHHHHHHHHHHHHHHhcc
Q 018231 294 QA--VFPGLQ--GGPHNHTITGLAVALKQVCTL 322 (359)
Q Consensus 294 ~~--~~~~~~--gt~~~~~i~al~~Al~~~~~~ 322 (359)
.. .+++.. |....-.+.|++.+|.+...+
T Consensus 283 ~~~~~~eG~~tygg~~grd~~alAvgl~E~~~~ 315 (460)
T PRK13237 283 ELVVVYEGMPSYGGMAGRDMEAMAIGIEESVQY 315 (460)
T ss_pred HhccccCCCcCCCChhhhHHHHHHhHHHhhchH
Confidence 44 334432 554455788898888877764
No 225
>PTZ00376 aspartate aminotransferase; Provisional
Probab=99.68 E-value=1.4e-15 Score=146.92 Aligned_cols=208 Identities=12% Similarity=0.062 Sum_probs=130.3
Q ss_pred hcCceeeCCCC---CCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcC--CCCCCCceeEE--E
Q 018231 46 WKGLELIPSEN---FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFR--LDPEKWGVNVQ--S 118 (359)
Q Consensus 46 ~~~i~l~~~~~---~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g--~~~~~~~~~v~--~ 118 (359)
.+.++|..+.. .++..+.+++.+++..-.. ......|+...+..++++++.+++.+..+ ++++ +|+ .
T Consensus 29 ~~~i~l~~g~~~~~~~~~~~~~~~~~a~~~~~~--~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~----~v~~~~ 102 (404)
T PTZ00376 29 PSKVNLGIGAYRDENGKPYVLESVRKAEKIIAE--KNLDKEYLPIEGLQSFIEAAQKLLFGEASYALAEK----RIATVQ 102 (404)
T ss_pred cccEecccceeECCCCCEehhhHHHHHHHHhcc--ccCCCCCCCCCCCHHHHHHHHHHhcCCCccccccC----eEEEee
Confidence 46688887652 3344445555555422110 01112345557778888777777755543 3444 376 5
Q ss_pred CCChH-HHHHHH---HhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhh
Q 018231 119 LSGSP-SNFQVY---TALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF 194 (359)
Q Consensus 119 tsG~~-a~~~~~---~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~ 194 (359)
|+|++ +..+++ .++++|||+|++++ |.|+.+...+...|++++.+++. +++++.+|++.+++.+...
T Consensus 103 t~G~~~al~~~~~~l~~~~~~Gd~Vlv~~--------P~y~~~~~~~~~~G~~~~~v~l~-~~~~~~~d~~~l~~~~~~~ 173 (404)
T PTZ00376 103 ALSGTGALRLGFEFLKRFLPAGTTVYVSN--------PTWPNHVNIFKSAGLNVKEYRYY-DPKTKGLDFDGMLEDLRTA 173 (404)
T ss_pred ccCcchHHHHHHHHHHHhcCCCCEEEEcC--------CCchhHHHHHHHcCCceeecccc-CcccCCcCHHHHHHHHHhC
Confidence 88888 655444 46789999999999 55555454566778777666531 2245789999999988531
Q ss_pred --CCcEEEEc-CCC-CCChh---hHHHHHHHHHHcCCEEEEeccccccccccC-------CCCCC-CCCceEEEeCCCCc
Q 018231 195 --RPKLIVAG-ASA-YARLY---DYERIRKVCNKQKAIMLADMAHISGLVAAG-------VIPSP-FEYADVVTTTTHKS 259 (359)
Q Consensus 195 --~~k~v~l~-~~n-~g~~~---~l~~i~~la~~~~~~vivD~a~~~g~~~~~-------~~~~~-~~~~D~v~~s~~K~ 259 (359)
++++++++ |+| ||... .+++|+++|++|++++|+|+++.. ....+ ..... ...--+++.|++|.
T Consensus 174 ~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~-~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~ 252 (404)
T PTZ00376 174 PNGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQG-FASGDLDKDAYAIRLFAERGVEFLVAQSFSKN 252 (404)
T ss_pred CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehhhcC-ccCCCHHHHHHHHHHHHhcCCcEEEEEeCCCc
Confidence 45666667 888 99554 567888899999999999999632 11111 00000 00123888999998
Q ss_pred CC--CCCceEEE
Q 018231 260 LR--GPRGAMIF 269 (359)
Q Consensus 260 l~--gp~gG~l~ 269 (359)
++ |.+-|+++
T Consensus 253 ~~~~GlRvG~~~ 264 (404)
T PTZ00376 253 MGLYGERIGALH 264 (404)
T ss_pred ccccccccceEE
Confidence 75 44449985
No 226
>PRK12462 phosphoserine aminotransferase; Provisional
Probab=99.68 E-value=2.2e-15 Score=141.39 Aligned_cols=254 Identities=13% Similarity=0.087 Sum_probs=158.9
Q ss_pred cCceeeCCCCCCcHHHHHHHHhhhhccCCCCCC--CCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCC-hH
Q 018231 47 KGLELIPSENFTSVSVMQAVGSVMTNKYSEGYP--GARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSG-SP 123 (359)
Q Consensus 47 ~~i~l~~~~~~~~~~v~~al~~~~~~~~~~g~~--~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG-~~ 123 (359)
...++.+|+..+|++|++++++.+.+....|.. .-.++ +.++ .++-+.+.+.++++++++.+. .|++.+| ++
T Consensus 4 ~~~nF~aGPa~lp~~Vl~~~~~~~~~~~~~g~si~eisHR-s~~F-~~i~~~~~~~Lr~Ll~~P~~y---~Vlfl~GggT 78 (364)
T PRK12462 4 NQLNFSGGPGALPDTVLEQVRQAVVELPETGLSVLGMSHR-SSWF-SSLLAQAEADLRDLLGIPDEY---GVVFLQGGSS 78 (364)
T ss_pred ccceecCCCcCCCHHHHHHHHHHHhcccccCccccccccc-cHHH-HHHHHHHHHHHHHHhCCCCCC---eEEEEeccHH
Confidence 357999999999999999999888763322211 11122 2233 344445889999999995433 3555444 55
Q ss_pred -HHHHHHHhhcCCCCeee-ecCCCCCcccCccccccccceeeeeeeeEEEecccC-CCCCCCCHHHHHHHhhhhCCcEEE
Q 018231 124 -SNFQVYTALLKPHDRIM-ALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLN-ESTGYIDYDQLEKSATLFRPKLIV 200 (359)
Q Consensus 124 -a~~~~~~al~~~Gd~Vl-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~~~~d~e~l~~~i~~~~~k~v~ 200 (359)
++.++...++.+||+++ +.. .+.++..+. ..+...| ++..+..... ..+..++++++ .+.+ +.+.|.
T Consensus 79 ~~~ea~~~Nll~~g~~~~~~~~---tG~fg~r~~---~ea~~~g-~v~~~~~~~~~~~~~~p~~~~~--~~~~-d~~~v~ 148 (364)
T PRK12462 79 LQFSMIPMNFSRPGAAAPEYVT---TGYWSRKAI---GEASRVA-AMRVVWDGAASGYRTLPSLAEL--DWDA-RAPFRH 148 (364)
T ss_pred HHHHHHHHHcCCCCCcEEEEEe---CCHHHHHHH---HHHHhcC-CceEecCcCCCCCCcCCCHHHh--ccCC-CCcEEE
Confidence 88889999999999765 333 233322221 1122223 2333321111 01235666665 2333 567777
Q ss_pred EcCCC--CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEeCCCCcCCCCCc-eEEEEeCCcchh
Q 018231 201 AGASA--YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEI 277 (359)
Q Consensus 201 l~~~n--~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~ 277 (359)
++.++ +|...+ ++.+.+++++|+|++.+++..++++.+ .|++.++++|+|+ |+| +++++++++...
T Consensus 149 ~t~NETstGv~~~-----~~~~~~~~llvvD~sS~~~s~pid~~~-----~dvi~agsQKnlg-P~Gltvvivs~~al~~ 217 (364)
T PRK12462 149 YVSNETVEGLQFP-----DAAGLPDSPLIADMSSDFMSRPFDVEA-----YGMVYAHAQKNLG-PAGVTVAIIRRALLER 217 (364)
T ss_pred EccCCCCceEecC-----cccccCCCeEEEEcCchhhCCCCChHH-----ccEEEeeccccCC-CCceEEEEECHHHHhh
Confidence 77444 676665 333447899999999999999888766 4899999999996 999 999999864222
Q ss_pred ccCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhcc-ccchhHh
Q 018231 278 NKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTL-ITFSHIH 329 (359)
Q Consensus 278 ~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~~-~~~~~~~ 329 (359)
.....+..+++....... ..+-||+++.++++..+|+.+.++ ++.+++.
T Consensus 218 ~~~~~p~~ldy~~~~~~~---s~~nTPpv~~iy~l~~~l~~i~~e~GGl~~~~ 267 (364)
T PRK12462 218 VPDTLPPMLDFRTHVEHR---SNYNTPPVFAIYVMALVLRWIRDEIGGVHAMR 267 (364)
T ss_pred ccccCCchhhHHHHHhcC---CCCCCchHHHHHHHHHHHHHHHHhccCHHHHH
Confidence 111112222333333221 234599999999999999999887 3554433
No 227
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=99.68 E-value=4.2e-16 Score=150.93 Aligned_cols=153 Identities=16% Similarity=0.174 Sum_probs=113.7
Q ss_pred HHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccC
Q 018231 97 CQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLN 176 (359)
Q Consensus 97 ~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 176 (359)
+++.+++++|.+. .++++||+.++..++.+++++||+|+++.+.|++.+... ...+...|.+++.++ .+
T Consensus 62 le~~lA~l~g~~~-----~v~~~sG~~Ai~~al~~l~~~Gd~Vl~~~~~y~~t~~~~----~~~~~~~G~~v~~v~--~~ 130 (418)
T TIGR01326 62 LEQRIAALEGGVA-----ALAVASGQAAITYAILNLAQAGDNIVSSSYLYGGTYNLF----KHTLKRLGIEVRFVD--PD 130 (418)
T ss_pred HHHHHHHHhCCCe-----EEEEccHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHH----HHHHHHcCcEEEEEC--CC
Confidence 4488999999753 366666666888788889999999999987776543321 112233465554443 22
Q ss_pred CCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCC-CceEEE
Q 018231 177 ESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE-YADVVT 253 (359)
Q Consensus 177 ~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~-~~D~v~ 253 (359)
|++++++.+++ ++++|+++ ++| +|.+.|+++|.++|+++|+++|+|++++.+.... ++. ++|+++
T Consensus 131 ------d~~~l~~~l~~-~t~~V~le~p~NPtg~v~dl~~I~~la~~~~i~livD~t~~~~~~~~-----~l~~g~Divv 198 (418)
T TIGR01326 131 ------DPEEFEKAIDE-NTKAVFAETIGNPAINVPDIEAIAEVAHAHGVPLIVDNTFATPYLCR-----PIDHGADIVV 198 (418)
T ss_pred ------CHHHHHHhcCc-CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCchhhcCC-----chhcCCeEEE
Confidence 89999999987 89999987 777 8888999999999999999999999997663321 222 589999
Q ss_pred eCCCCcCCCCCc--eEEEEeC
Q 018231 254 TTTHKSLRGPRG--AMIFFRK 272 (359)
Q Consensus 254 ~s~~K~l~gp~g--G~l~~~~ 272 (359)
+|++|+++|+.. |+++++.
T Consensus 199 ~S~sK~l~g~G~~lGg~v~~~ 219 (418)
T TIGR01326 199 HSATKYIGGHGTAIGGVIVDG 219 (418)
T ss_pred ECccccccCCccceEEEEEec
Confidence 999999976543 6666643
No 228
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=99.68 E-value=8.9e-16 Score=146.25 Aligned_cols=153 Identities=16% Similarity=0.180 Sum_probs=113.1
Q ss_pred HHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccC
Q 018231 97 CQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLN 176 (359)
Q Consensus 97 ~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 176 (359)
+++.++++.|++. .+++++|+.++..+ .+++++||+|+++++.|++..... .......|+++..++ .
T Consensus 57 le~~la~l~g~~~-----~~~~~sG~~ai~~~-~~ll~~Gd~Vl~~~~~y~~t~~~~----~~~~~~~G~~v~~vd--~- 123 (366)
T PRK08247 57 LEQAIADLEGGDQ-----GFACSSGMAAIQLV-MSLFRSGDELIVSSDLYGGTYRLF----EEHWKKWNVRFVYVN--T- 123 (366)
T ss_pred HHHHHHHHhCCCc-----EEEEcCHHHHHHHH-HHHhCCCCEEEEecCCcCcHHHHH----HHHhhccCceEEEEC--C-
Confidence 4488999999975 47777776677644 468899999999997777543211 112233465554442 2
Q ss_pred CCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEe
Q 018231 177 ESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTT 254 (359)
Q Consensus 177 ~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~ 254 (359)
.|++++++++++ +|++|+++ |+| ++...++++|.++|+++|+++|+|++++.+...... .. ++|+++.
T Consensus 124 -----~d~~~l~~~i~~-~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~~~~~~~p~-~~---g~di~i~ 193 (366)
T PRK08247 124 -----ASLKAIEQAITP-NTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYTPVLQRPL-EE---GADIVIH 193 (366)
T ss_pred -----CCHHHHHHhccc-CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccccccCch-hc---CCcEEEe
Confidence 289999999987 89999997 777 788899999999999999999999998654432211 11 4899999
Q ss_pred CCCCcCCCCC---ceEEEEeC
Q 018231 255 TTHKSLRGPR---GAMIFFRK 272 (359)
Q Consensus 255 s~~K~l~gp~---gG~l~~~~ 272 (359)
|++|+++|+. +|+++.++
T Consensus 194 S~sK~~~g~~d~~~G~iv~~~ 214 (366)
T PRK08247 194 SATKYLGGHNDVLAGLVVAKG 214 (366)
T ss_pred ecceeccCCCceeeeEEecCh
Confidence 9999998764 48777764
No 229
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.68 E-value=7.4e-16 Score=149.08 Aligned_cols=154 Identities=13% Similarity=0.108 Sum_probs=113.6
Q ss_pred HHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccC
Q 018231 97 CQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLN 176 (359)
Q Consensus 97 ~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 176 (359)
+++.++++.|.+. .++++||+.++..++.+++++||+|+++.+.|++.+.... ......|.++..+ +.
T Consensus 63 Le~~lA~l~g~~~-----~l~~ssG~~Ai~~al~al~~~Gd~Vl~~~~~Y~~t~~~~~----~~l~~~gi~v~~~--d~- 130 (425)
T PRK06084 63 LEQRVAALEGGVG-----ALAVASGMAAITYAIQTIAEAGDNIVSVAKLYGGTYNLLA----HTLPRIGIETRFA--AH- 130 (425)
T ss_pred HHHHHHHHhCCCc-----eeEehhHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHH----HhcccceeEEEEE--CC-
Confidence 4488999998754 3777777778887889999999999999877765433211 1112234333323 12
Q ss_pred CCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEe
Q 018231 177 ESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTT 254 (359)
Q Consensus 177 ~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~ 254 (359)
.|++++++.+++ ++++|+++ ++| +|.+.|+++|.++|+++|+++|+|++|+.+...... .. ++|++++
T Consensus 131 -----~d~e~le~ai~~-~tklV~lesp~NPtG~v~dl~~I~~la~~~~i~vVvD~a~a~~~~~~p~-~~---gaDivv~ 200 (425)
T PRK06084 131 -----DDIAALEALIDE-RTKAVFCESIGNPAGNIIDIQALADAAHRHGVPLIVDNTVATPVLCRPF-EH---GADIVVH 200 (425)
T ss_pred -----CCHHHHHHHhcc-CCcEEEEeCCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccCChh-hc---CCCEEEE
Confidence 389999999987 89999998 878 899999999999999999999999999866543211 12 4999999
Q ss_pred CCCCcCCCCCc---eEEEEeC
Q 018231 255 TTHKSLRGPRG---AMIFFRK 272 (359)
Q Consensus 255 s~~K~l~gp~g---G~l~~~~ 272 (359)
|++|+++|+.. |+++.+.
T Consensus 201 S~tK~l~G~g~~~gG~v~~~~ 221 (425)
T PRK06084 201 SLTKYIGGHGTSIGGIVVDSG 221 (425)
T ss_pred CchhcccccccceeEEEEeCC
Confidence 99999987654 5555433
No 230
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=99.67 E-value=3.6e-16 Score=148.49 Aligned_cols=155 Identities=15% Similarity=0.176 Sum_probs=110.2
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeee
Q 018231 88 EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSI 166 (359)
Q Consensus 88 ~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~ 166 (359)
....++| +.++++.|.+. +++++|++ |+.+++ .++++||+|+++...|++... .+..... ..+
T Consensus 54 p~~~~le----~~lA~leg~~~------~v~~~sG~aAi~~~l-~~l~~GD~VI~~~~~yg~~~~-~~~~~~~---~~~- 117 (364)
T PRK07269 54 PTRAKLE----ETLAAIESADY------ALATSSGMSAIVLAF-SVFPVGSKVVAVRDLYGGSFR-WFNQQEK---EGR- 117 (364)
T ss_pred ccHHHHH----HHHHHHhCCCe------EEEeCCHHHHHHHHH-HHhCCCCEEEEecCCcCchHH-HHHHHHh---cCc-
Confidence 3355555 78888888664 55565555 777666 567999999999866654431 1100000 001
Q ss_pred eeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCC
Q 018231 167 FFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPS 244 (359)
Q Consensus 167 ~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~ 244 (359)
+. + .+..|++++++.+++ +||+|+++ |+| +|.+.|+++|+++|+++|+++++|++++.+... .
T Consensus 118 -~~-~-------~~~~d~~~l~~~i~~-~TklV~lesP~NPtg~~~di~~I~~la~~~gi~vvvD~t~~~~~~~-----~ 182 (364)
T PRK07269 118 -FH-F-------TYANTEEELIAAIEE-DTDIVYIETPTNPLMVEFDIEKVAKLAHAKGAKVIVDNTFYSPIYQ-----R 182 (364)
T ss_pred -EE-E-------EecCCHHHHHHhcCc-CceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccC-----C
Confidence 10 1 134589999999987 89999988 888 888899999999999999999999997654322 2
Q ss_pred CCC-CceEEEeCCCCcCCCCC---ceEEEEeCC
Q 018231 245 PFE-YADVVTTTTHKSLRGPR---GAMIFFRKG 273 (359)
Q Consensus 245 ~~~-~~D~v~~s~~K~l~gp~---gG~l~~~~~ 273 (359)
++. ++|++++|++|+++|+. ||+++++++
T Consensus 183 pl~~gaDivv~S~tK~l~g~~d~~gG~v~~~~~ 215 (364)
T PRK07269 183 PIELGADIVLHSATKYLSGHNDVLAGVVVTNDL 215 (364)
T ss_pred chhhCCcEEEecCceeccCCCcccceEEEeCcH
Confidence 233 59999999999998755 488787764
No 231
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.67 E-value=5.7e-16 Score=149.22 Aligned_cols=157 Identities=14% Similarity=0.159 Sum_probs=117.2
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeee
Q 018231 88 EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIF 167 (359)
Q Consensus 88 ~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~ 167 (359)
+....+| +.++++.|... .+.+.||+.|+.+++.+++++||+|+++.+.|.+...... ..+...|++
T Consensus 61 Ptv~~lE----~~la~leg~~~-----av~~~SG~aAi~~al~all~~GD~VI~~~~~Y~~T~~~~~----~~l~~~Gi~ 127 (432)
T PRK06702 61 PTLAAFE----QKLAELEGGVG-----AVATASGQAAIMLAVLNICSSGDHLLCSSTVYGGTFNLFG----VSLRKLGID 127 (432)
T ss_pred cHHHHHH----HHHHHHhCCCc-----EEEECCHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHH----HHHHHCCCE
Confidence 4456555 88999999865 3777777778888888999999999999977775543211 112234554
Q ss_pred eEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCC
Q 018231 168 FETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP 245 (359)
Q Consensus 168 ~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~ 245 (359)
+..+ + ..+|++++++++++ +||+|++. ++| ++.+.|+++|+++|+++|+++++|++.+.... ..|
T Consensus 128 v~~v----d---~~~d~~~l~~~I~~-~Tk~I~~e~pgnP~~~v~Di~~I~~iA~~~gi~livD~T~~tP~~-----~~p 194 (432)
T PRK06702 128 VTFF----N---PNLTADEIVALAND-KTKLVYAESLGNPAMNVLNFKEFSDAAKELEVPFIVDNTLATPYL-----CQA 194 (432)
T ss_pred EEEE----C---CCCCHHHHHHhCCc-CCeEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEECCCCchhh-----CCh
Confidence 4444 2 34689999999998 99999987 777 77888999999999999999999999642221 223
Q ss_pred CC-CceEEEeCCCCcCCCCCc---eEEEE
Q 018231 246 FE-YADVVTTTTHKSLRGPRG---AMIFF 270 (359)
Q Consensus 246 ~~-~~D~v~~s~~K~l~gp~g---G~l~~ 270 (359)
+. |+|+++.|.+|+++|..+ |+++.
T Consensus 195 l~~GADIvv~S~TKy~~Ghsd~l~G~v~~ 223 (432)
T PRK06702 195 FEHGANIIVHSTTKYIDGHASSLGGIVID 223 (432)
T ss_pred hhcCCCEEEEccccccCCCcceeceEEEe
Confidence 33 599999999999988766 55543
No 232
>PRK05967 cystathionine beta-lyase; Provisional
Probab=99.67 E-value=1.1e-15 Score=145.83 Aligned_cols=154 Identities=12% Similarity=0.048 Sum_probs=112.2
Q ss_pred HHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccC
Q 018231 97 CQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLN 176 (359)
Q Consensus 97 ~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 176 (359)
+++.++.+.+.+. .++++||+.|+.+++.++++|||+|+++++.|++.... ........|.++..++ .+
T Consensus 69 Le~~la~le~~~~-----~v~~sSG~aAi~~~l~all~~GD~Vlv~~~~Y~~~~~l----~~~~l~~~Gi~v~~vd--~~ 137 (395)
T PRK05967 69 LCKAIDALEGSAG-----TILVPSGLAAVTVPFLGFLSPGDHALIVDSVYYPTRHF----CDTMLKRLGVEVEYYD--PE 137 (395)
T ss_pred HHHHHHHHhCCCC-----EEEECcHHHHHHHHHHHhcCCCCEEEEccCCcHHHHHH----HHHHHHhcCeEEEEeC--CC
Confidence 3377777776543 48888887788878999999999999998776654321 1112234465554442 22
Q ss_pred CCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEe
Q 018231 177 ESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTT 254 (359)
Q Consensus 177 ~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~ 254 (359)
+.+.+++++++ +||+|+++ |+| ++.+.|+++|+++|+++|+++++|++++.+... ..... |+|+++.
T Consensus 138 ------~~e~l~~al~~-~TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~t~a~p~~~-~pl~~---GaDivv~ 206 (395)
T PRK05967 138 ------IGAGIAKLMRP-NTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNTWATPLYF-RPLDF---GVDISIH 206 (395)
T ss_pred ------CHHHHHHhcCc-CceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEECCccCceec-ChhHc---CCCEEEE
Confidence 45789999987 89999998 788 789999999999999999999999998654322 11223 5999999
Q ss_pred CCCCcCCCCCc---eEEEEeC
Q 018231 255 TTHKSLRGPRG---AMIFFRK 272 (359)
Q Consensus 255 s~~K~l~gp~g---G~l~~~~ 272 (359)
|.+|+++|..+ |+++.++
T Consensus 207 S~tKy~~Gh~d~~~G~v~~~~ 227 (395)
T PRK05967 207 AATKYPSGHSDILLGTVSANE 227 (395)
T ss_pred ecccccCCCCCeeEEEEEcCH
Confidence 99999877554 6555444
No 233
>PLN02880 tyrosine decarboxylase
Probab=99.67 E-value=8.7e-16 Score=150.90 Aligned_cols=177 Identities=11% Similarity=0.054 Sum_probs=121.3
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCCc---eeEEECCChH-HHHHHHHhh----cC-C-----CC-eeeecCCCCCcccCc
Q 018231 88 EYIDMAESLCQKRALEAFRLDPEKWG---VNVQSLSGSP-SNFQVYTAL----LK-P-----HD-RIMALDLPHGGHLSH 152 (359)
Q Consensus 88 ~~~~~l~~~~~~~~a~~~g~~~~~~~---~~v~~tsG~~-a~~~~~~al----~~-~-----Gd-~Vl~~~~~~~~~~~~ 152 (359)
....++|+.+.+|+++++|.+...|. ..-++|+|++ +|+.++.+. ++ . .. .|++++..|.++..
T Consensus 118 p~~~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~Sv~K- 196 (490)
T PLN02880 118 PAATELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHSALQK- 196 (490)
T ss_pred cccHHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCchHHHHH-
Confidence 44678888899999999999753210 1256677777 877555432 11 1 12 34445544554422
Q ss_pred cccccccceeeeeee---eEEEecccCCCCCCCCHHHHHHHhhhhC-----CcEEEEc--CCCCCChhhHHHHHHHHHHc
Q 018231 153 GYQTDTKKISAVSIF---FETMPYRLNESTGYIDYDQLEKSATLFR-----PKLIVAG--ASAYARLYDYERIRKVCNKQ 222 (359)
Q Consensus 153 ~~~~~~~~~~~~g~~---~~~v~~~~~~~~~~~d~e~l~~~i~~~~-----~k~v~l~--~~n~g~~~~l~~i~~la~~~ 222 (359)
.+.+.|.. ++.||.+.+ +++.+|+++|++++.+.+ |-+|+.+ .+++|.+.|+++|+++|++|
T Consensus 197 -------aa~~lGlg~~~v~~Vp~d~~-~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl~eI~~i~~~~ 268 (490)
T PLN02880 197 -------ACQIAGIHPENCRLLKTDSS-TNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSN 268 (490)
T ss_pred -------HHHHcCCCHHHEEEeecCCC-cCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcHHHHHHHHHHc
Confidence 45556653 555653322 467999999999997521 3445544 45589999999999999999
Q ss_pred CCEEEEeccccccccccCCC---CCCCCCceEEEeCCCCcCCCCCc-eEEEEeCC
Q 018231 223 KAIMLADMAHISGLVAAGVI---PSPFEYADVVTTTTHKSLRGPRG-AMIFFRKG 273 (359)
Q Consensus 223 ~~~vivD~a~~~g~~~~~~~---~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~ 273 (359)
|++++||+||+.+....+.. -.++.++|+++.++|||++.|.+ |++++++.
T Consensus 269 ~iwlHVDaA~gg~~~~~~~~~~~l~gie~aDSit~d~HKwl~~P~~~g~llvr~~ 323 (490)
T PLN02880 269 GMWFHVDAAYAGSACICPEYRHYIDGVEEADSFNMNAHKWFLTNFDCSLLWVKDR 323 (490)
T ss_pred CCEEEEehhhHHHHHhCHHHHHHhcCchhcCEEEECchhhcCCCccEEEEEEeCH
Confidence 99999999998776543211 12233589999999999999999 99999874
No 234
>PRK04635 histidinol-phosphate aminotransferase; Provisional
Probab=99.66 E-value=7e-16 Score=146.47 Aligned_cols=158 Identities=18% Similarity=0.164 Sum_probs=112.6
Q ss_pred HHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHhhcCCC-CeeeecCCCCCcccCccccccccceeeeeeeeEEEecc
Q 018231 97 CQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPH-DRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYR 174 (359)
Q Consensus 97 ~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~al~~~G-d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 174 (359)
+++.+++++|+++++ |++|+|++ ++..++.++++|| |+|++++ |.|..+...+...|++++.++
T Consensus 65 Lr~aia~~~~~~~~~----I~it~Gs~~~i~~~~~~~~~~g~d~vlv~~--------P~y~~y~~~~~~~g~~v~~v~-- 130 (354)
T PRK04635 65 LINAYSAYAGVAPEQ----ILTSRGADEAIELLIRAFCEPGQDSIACFG--------PTYGMYAISAETFNVGVKALP-- 130 (354)
T ss_pred HHHHHHHHhCcCHHH----EEEeCCHHHHHHHHHHHhcCCCCCeEEEcC--------CChHHHHHHHHHcCCEEEEEe--
Confidence 457788889998864 99999999 8887888999999 8999988 444444434555677776665
Q ss_pred cCCCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhhHHHHHHHHHHc-CCEEEEeccccccccccCCCCC-CCCCce
Q 018231 175 LNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQ-KAIMLADMAHISGLVAAGVIPS-PFEYAD 250 (359)
Q Consensus 175 ~~~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~l~~i~~la~~~-~~~vivD~a~~~g~~~~~~~~~-~~~~~D 250 (359)
.+ +++.+|++.+++ + + ++|+|+++ |+| ||...+.+++.++++.. +++||+|+++............ ....--
T Consensus 131 ~~-~~~~~~~~~l~~-~-~-~~~li~i~nP~NPTG~~~~~~~l~~l~~~~~~~~vivDeay~~~~~~~s~~~~~~~~~~~ 206 (354)
T PRK04635 131 LT-ADYQLPLDYIEQ-L-D-GAKLVFICNPNNPTGTVIDRADIEQLIEMTPDAIVVVDEAYIEFCPEYSVADLLASYPNL 206 (354)
T ss_pred cC-CCCCCCHHHHHh-c-c-CCCEEEEeCCCCCCCccCCHHHHHHHHHhCCCcEEEEeCchHhhccCcchHHHHhhCCCE
Confidence 44 457889998873 4 4 89999998 888 99999999998888763 7999999997432211000000 000123
Q ss_pred EEEeCCCCcCC--CCCceEEEEeC
Q 018231 251 VVTTTTHKSLR--GPRGAMIFFRK 272 (359)
Q Consensus 251 ~v~~s~~K~l~--gp~gG~l~~~~ 272 (359)
+++.|++|+++ |.+-|++++++
T Consensus 207 iv~~S~SK~~~l~GlRlG~~i~~~ 230 (354)
T PRK04635 207 VVLRTLSKAFALAGARCGFTLANE 230 (354)
T ss_pred EEEechHHHhhhhHHHHhhhhCCH
Confidence 68899999873 33339999877
No 235
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=99.66 E-value=5.5e-15 Score=140.34 Aligned_cols=194 Identities=16% Similarity=0.149 Sum_probs=128.5
Q ss_pred CceeeCCCCC--CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-H
Q 018231 48 GLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-S 124 (359)
Q Consensus 48 ~i~l~~~~~~--~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a 124 (359)
.++|..++++ +|+.+++++.+.+.... .| +... ..+ +|+.+++++++++++ |++|+|++ +
T Consensus 21 ~~~l~~~~~~~~~p~~~~~a~~~~~~~~~--~Y------~~~~-~~~----lr~~ia~~~~~~~~~----i~it~Ga~~~ 83 (354)
T PRK06358 21 ILDFSANINPLGVPESLKQAITENLDKLV--EY------PDPD-YLE----LRKRIASFEQLDLEN----VILGNGATEL 83 (354)
T ss_pred eEEecCCCCCCCCCHHHHHHHHHHHHhhh--cC------CCcc-HHH----HHHHHHHHhCCChhh----EEECCCHHHH
Confidence 4788877765 57889999888764311 22 2211 233 557788888998764 99999999 7
Q ss_pred HHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc-C
Q 018231 125 NFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-A 203 (359)
Q Consensus 125 ~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~-~ 203 (359)
+..++.++ .+ |.|+++++.| ..+...+...|.++..++++.+ +++.+| +++.+.+.+ ++++++++ |
T Consensus 84 l~~~~~~~-~~-~~v~i~~P~y--------~~~~~~~~~~g~~~~~~~~~~~-~~~~~d-~~~~~~~~~-~~~~v~~~~P 150 (354)
T PRK06358 84 IFNIVKVT-KP-KKVLILAPTF--------AEYERALKAFDAEIEYAELTEE-TNFAAN-EIVLEEIKE-EIDLVFLCNP 150 (354)
T ss_pred HHHHHHHh-CC-CcEEEecCCh--------HHHHHHHHHcCCeeEEEeCccc-cCCCcc-HHHHHhhcc-CCCEEEEeCC
Confidence 77677765 44 6888888444 4444344556766666654222 356788 666666665 79998777 8
Q ss_pred CC-CCChhh---HHHHHHHHHHcCCEEEEeccccccccccCCCCCCC---C--CceEEEeCCCCcCC--CCCceEEEEeC
Q 018231 204 SA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPF---E--YADVVTTTTHKSLR--GPRGAMIFFRK 272 (359)
Q Consensus 204 ~n-~g~~~~---l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~---~--~~D~v~~s~~K~l~--gp~gG~l~~~~ 272 (359)
+| ||...+ +++|.++|+++++++|+|+++.- ....+.....+ . .--+++.|++|.++ |.+-|++++.+
T Consensus 151 ~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~-~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~gl~G~RiG~lv~~~ 229 (354)
T PRK06358 151 NNPTGQLISKEEMKKILDKCEKRNIYLIIDEAFMD-FLEENETISMINYLENFKNLIIIRAFTKFFAIPGLRLGYGLTSN 229 (354)
T ss_pred CCCCCCccCHHHHHHHHHHHHhcCCEEEEeCcccc-cCCCccchhHHHhccCCCCEEEEEechhhccCcchhheeeecCC
Confidence 88 896654 77888889999999999999742 22111000000 0 12378899999874 44449998864
No 236
>PRK07908 hypothetical protein; Provisional
Probab=99.65 E-value=5.3e-15 Score=140.21 Aligned_cols=190 Identities=14% Similarity=0.141 Sum_probs=125.0
Q ss_pred hcCceeeCCCCC--CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH
Q 018231 46 WKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP 123 (359)
Q Consensus 46 ~~~i~l~~~~~~--~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~ 123 (359)
.+.++|..++++ +|+.+++++.+.+.+.. +|+. ..+..+ +|+.+++++|+++++ |++|+|++
T Consensus 22 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~Y~~------~~g~~~----lr~aia~~~~~~~~~----I~it~Ga~ 85 (349)
T PRK07908 22 PGLLDFAVNVRHDTPPEWLRERLAARLGDLA--AYPS------TEDERR----ARAAVAARHGRTPDE----VLLLAGAA 85 (349)
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHhhHhh--cCCC------ccchHH----HHHHHHHHhCcChhh----EEECCCHH
Confidence 357889888874 68889999988765421 2322 233444 447788888988754 99999999
Q ss_pred -HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc
Q 018231 124 -SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG 202 (359)
Q Consensus 124 -a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~ 202 (359)
++..++. +++|+ +++.. |.|..+...+...|.++..++ .+ +++.+|++++ .+ ++++++++
T Consensus 86 ~al~~~~~--l~~~~-viv~~--------P~y~~~~~~~~~~G~~i~~v~--~~-~~~~~d~~~l----~~-~~~~i~l~ 146 (349)
T PRK07908 86 EGFALLAR--LRPRR-AAVVH--------PSFTEPEAALRAAGIPVHRVV--LD-PPFRLDPAAV----PD-DADLVVIG 146 (349)
T ss_pred HHHHHHHh--cCCCe-EEEeC--------CCChHHHHHHHHcCCEEEeec--cC-cccCcChhHh----cc-CCCEEEEc
Confidence 7775555 57754 55555 333333334455676665554 45 3377888754 34 78998887
Q ss_pred -CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccc--cccCCCCCCCCCceEEEeCCCCcCC--CCCceEEEEeC
Q 018231 203 -ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGL--VAAGVIPSPFEYADVVTTTTHKSLR--GPRGAMIFFRK 272 (359)
Q Consensus 203 -~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~--~~~~~~~~~~~~~D~v~~s~~K~l~--gp~gG~l~~~~ 272 (359)
++| ||...+.++|.++|++ +.++|+|++++.-. ....+..... .-.+++.|++|.++ |.+.|+++.++
T Consensus 147 np~NPTG~~~~~~~l~~l~~~-~~~iIvDe~y~~~~~~~~~~l~~~~~-~~~i~i~S~SK~~~l~GlRiG~~~~~~ 220 (349)
T PRK07908 147 NPTNPTSVLHPAEQLLALRRP-GRILVVDEAFADAVPGEPESLAGDDL-PGVLVLRSLTKTWSLAGLRVGYALGAP 220 (349)
T ss_pred CCCCCCCCCcCHHHHHHHHhc-CCEEEEECcchhhccCCccccccccC-CCEEEEeecccccCCccceeeeeecCH
Confidence 888 9999999999999964 78899999985311 0111111010 12466779999763 45559999876
No 237
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=99.65 E-value=1.4e-14 Score=139.99 Aligned_cols=202 Identities=14% Similarity=0.131 Sum_probs=125.7
Q ss_pred cCceeeCCCCC--CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-
Q 018231 47 KGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP- 123 (359)
Q Consensus 47 ~~i~l~~~~~~--~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~- 123 (359)
+.++|..++++ +++.+.+++.+.+.+... . .....|+...+...+++++++++.+ .+++++ +|++|+|++
T Consensus 34 ~~i~l~~~~~~~~~~~~v~~~~~~~~~~~~~-~-~~~~~Y~p~~g~~~lr~aia~~~~~-~~~~~d----~I~it~Ga~~ 106 (402)
T TIGR03542 34 DIIRLGIGDTTQPLPASVIEAFHNAVDELAS-E-ETFRGYGPEQGYPFLREAIAENDYR-GRIDPE----EIFISDGAKC 106 (402)
T ss_pred CeEEcCCCCCCCCCCHHHHHHHHHHHhcccc-c-ccccCCCCCCCCHHHHHHHHHHHHh-cCCCHH----HEEECCCcHH
Confidence 46888877765 678889999887765210 0 0011233334556666555444322 156665 499999999
Q ss_pred HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeee-----------eeEEEecccCC-CCCCCCHHHHHHHh
Q 018231 124 SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSI-----------FFETMPYRLNE-STGYIDYDQLEKSA 191 (359)
Q Consensus 124 a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~-----------~~~~v~~~~~~-~~~~~d~e~l~~~i 191 (359)
++.. +..++.+||+|++++|.|..+ ...+...|. .+..++ .++ +++.+|++.
T Consensus 107 al~~-l~~l~~~gd~Vlv~~P~y~~~--------~~~~~~~g~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~----- 170 (402)
T TIGR03542 107 DVFR-LQSLFGSDNTVAVQDPVYPAY--------VDSNVMAGRAGVLDDDGRYSKITYLP--CTKENNFIPDLPE----- 170 (402)
T ss_pred HHHH-HHHhcCCCCEEEEeCCCCcch--------HHHHHHcCCccccccccccceEEEee--cchhhCCCCCccc-----
Confidence 7664 466778999999999665543 323334454 444444 332 234555422
Q ss_pred hhhCCcEEEEc-CCC-CCChhh---HHHHHHHHHHcCCEEEEeccccccccccCCCCCCC---C---CceEEEeCCCCcC
Q 018231 192 TLFRPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPF---E---YADVVTTTTHKSL 260 (359)
Q Consensus 192 ~~~~~k~v~l~-~~n-~g~~~~---l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~---~---~~D~v~~s~~K~l 260 (359)
.+ ++++|+++ |+| ||...+ +++|.++|++||+++|+|+++..-.. .+....++ . ..-+++.|++|.|
T Consensus 171 ~~-~~~~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~-~~~~~~~~~~~~~~~~~vi~~~SfSK~~ 248 (402)
T TIGR03542 171 EP-KIDIIYLCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFIS-DPSLPHSIFEIPGAKECAIEFRSFSKTA 248 (402)
T ss_pred cC-CceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhhhcc-CCCCCcchhhCCCCcccEEEEecCcccc
Confidence 13 78999988 888 896665 77888999999999999999753221 11101111 1 1236789999977
Q ss_pred C--CCCceEEEEeCC
Q 018231 261 R--GPRGAMIFFRKG 273 (359)
Q Consensus 261 ~--gp~gG~l~~~~~ 273 (359)
+ |.+-|+++++++
T Consensus 249 g~pGlRiG~~i~~~~ 263 (402)
T TIGR03542 249 GFTGVRLGWTVVPKE 263 (402)
T ss_pred CCCCcceEEEEecHH
Confidence 4 333399999763
No 238
>PRK13578 ornithine decarboxylase; Provisional
Probab=99.65 E-value=7.6e-16 Score=154.50 Aligned_cols=208 Identities=21% Similarity=0.182 Sum_probs=142.6
Q ss_pred HHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEeccc
Q 018231 97 CQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL 175 (359)
Q Consensus 97 ~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 175 (359)
+++..++.||++. ..++++|+| +|.+++.+++++||.||+....|.|++.. ++.+.|+..+.+.-..
T Consensus 179 Aq~~AA~~fgAd~-----tyFlvNGTS~gn~a~i~a~~~~Gd~VLvdRN~HKSv~hg-------aLiLsGa~PVYl~P~~ 246 (720)
T PRK13578 179 AQKHAAKVFNADK-----TYFVLNGTSASNKVVTNALLTPGDLVLFDRNNHKSNHHG-------ALIQAGATPVYLETAR 246 (720)
T ss_pred HHHHHHHHhCCCc-----eEEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHHHH-------HHHHcCCeEEEeeccc
Confidence 6688999999986 488899999 99999999999999999999777776531 1446677666654333
Q ss_pred CCCC--CCCCH-----HHHHHHhhhh--------C-CcEEEEc-CCCCCChhhHHHHHHH-HHHcCCEEEEecccccccc
Q 018231 176 NEST--GYIDY-----DQLEKSATLF--------R-PKLIVAG-ASAYARLYDYERIRKV-CNKQKAIMLADMAHISGLV 237 (359)
Q Consensus 176 ~~~~--~~~d~-----e~l~~~i~~~--------~-~k~v~l~-~~n~g~~~~l~~i~~l-a~~~~~~vivD~a~~~g~~ 237 (359)
++-+ +.++. +.|++++.+. + .++++++ ++-.|...++++|+++ +++++ +|++|+||++-..
T Consensus 247 n~~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTYdG~~ydi~~I~~~~~h~~~-~llvDEAhgah~~ 325 (720)
T PRK13578 247 NPFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTYDGTIYNARQVVDKIGHLCD-YILFDSAWVGYEQ 325 (720)
T ss_pred cccCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECCCCcceeecHHHHHHHhhccCC-cEEEeCcchhhhc
Confidence 2111 23454 4488888763 1 4788888 4448999999999998 68888 9999999965432
Q ss_pred ccC----CCCCCCC-Cce----EEEeCCCCcCCCCCc-eEEEEeCCcchhccCCcchhhhHHHhhccccCCCCCCCCcHH
Q 018231 238 AAG----VIPSPFE-YAD----VVTTTTHKSLRGPRG-AMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNH 307 (359)
Q Consensus 238 ~~~----~~~~~~~-~~D----~v~~s~~K~l~gp~g-G~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~ 307 (359)
..+ .....+. |+| +++.|.||.+++... ++|.+++.. ..|.....+ .++++....-....+|+++
T Consensus 326 F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL~alTQaS~LHvk~~~----i~g~~~~v~-~~r~~~al~m~qSTSPsY~ 400 (720)
T PRK13578 326 FIPMMADCSPLLLELNENDPGIFVTQSVHKQQAGFSQTSQIHKKDNH----IKGQARYCP-HKRLNNAFMLHASTSPFYP 400 (720)
T ss_pred cCcccccCChhhhhcCCCCCCeEEEEChhhcchhhhhHhhhhcCCcc----cccccccCC-HHHHHHHHHHHcCCChHHH
Confidence 222 1112222 688 999999999988766 777776631 001000001 1333333221224789999
Q ss_pred HHHHHHHHHHHHhcc
Q 018231 308 TITGLAVALKQVCTL 322 (359)
Q Consensus 308 ~i~al~~Al~~~~~~ 322 (359)
.+++++.|..++..+
T Consensus 401 LmASLDva~~~m~~~ 415 (720)
T PRK13578 401 LFAALDVNAKMHEGE 415 (720)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999998888763
No 239
>PRK07392 threonine-phosphate decarboxylase; Validated
Probab=99.65 E-value=7.6e-15 Score=139.69 Aligned_cols=223 Identities=14% Similarity=0.110 Sum_probs=142.7
Q ss_pred cCceeeCCCCC--CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-
Q 018231 47 KGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP- 123 (359)
Q Consensus 47 ~~i~l~~~~~~--~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~- 123 (359)
+.++|..++++ +|+.+++++.+.+.. . .+|+. .. ..+ +++.+++++++++++ |++|+|++
T Consensus 23 ~~i~l~~~~n~~~~~~~~~~a~~~~~~~-~-~~Y~~------~~-~~~----Lr~aia~~~~v~~~~----I~it~G~~~ 85 (360)
T PRK07392 23 AILDFSASINPLGPPESVIAAIQSALSA-L-RHYPD------PD-YRE----LRLALAQHHQLPPEW----ILPGNGAAE 85 (360)
T ss_pred cEEEeCCcCCCCCCCHHHHHHHHHHHHH-h-hcCCC------cC-HHH----HHHHHHHHhCcChhh----EEECCCHHH
Confidence 45888887775 678899998876654 1 12322 12 233 447777778888764 99999999
Q ss_pred HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCC---CCCHHHHHHHhhhhCCcEEE
Q 018231 124 SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTG---YIDYDQLEKSATLFRPKLIV 200 (359)
Q Consensus 124 a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~---~~d~e~l~~~i~~~~~k~v~ 200 (359)
++..++.++ .+||.|++++ |.|..+...+...|+++..++++.+ ..+ ..|++++++.. + ++++++
T Consensus 86 ~i~~~~~~l-~~g~~vlv~~--------P~y~~~~~~~~~~g~~~~~v~~~~~-~~~~~~~~~~~~~~~~~-~-~~~~~~ 153 (360)
T PRK07392 86 LLTWAGREL-AQLRAVYLIT--------PAFGDYRRALRAFGATVKELPLPLD-QPSPGLTLRLQTLPPQL-T-PNDGLL 153 (360)
T ss_pred HHHHHHHHh-CCCCeEEEEC--------CCcHHHHHHHHHcCCeEEEEecccc-cCCcccccCHHHHHHhc-c-CCCEEE
Confidence 777677765 4789999999 4444444456667877766654322 222 35677776543 3 678888
Q ss_pred Ec-CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCC---C--CceEEEeCCCCcCC--CCCceEEEEe
Q 018231 201 AG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPF---E--YADVVTTTTHKSLR--GPRGAMIFFR 271 (359)
Q Consensus 201 l~-~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~---~--~~D~v~~s~~K~l~--gp~gG~l~~~ 271 (359)
++ |+| ||...+.++|.++++++++ +|+|+++.--... +...... . .--+++.|++|.|+ |.+-|+++++
T Consensus 154 l~nP~NPTG~~~~~~~l~~l~~~~~~-~IiDE~y~~~~~~-~~~~s~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~~v~~ 231 (360)
T PRK07392 154 LNNPHNPTGKLWSREAILPLLEQFAL-VVVDEAFMDFLPP-DAEQSLIPCLAEYPNLIILRSLTKFYSLPGLRLGYAIAH 231 (360)
T ss_pred EeCCCCCCCCCcCHHHHHHHHHHCCE-EEEECchhhhccC-ccccchHHHhhcCCCEEEEEechhhhcCCchheeeeeCC
Confidence 87 888 9999999999999999985 6669997422211 1000000 0 12488899999874 4444999987
Q ss_pred CCcchhccCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHH
Q 018231 272 KGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALK 317 (359)
Q Consensus 272 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~ 317 (359)
+ ++.+.+..... ..+.+.....++.++++
T Consensus 232 ~--------------~~~~~~~~~~~---~~~~s~~~q~~~~~~l~ 260 (360)
T PRK07392 232 P--------------DRLQRWQQWRD---PWPVNGLAAAAAIAALA 260 (360)
T ss_pred H--------------HHHHHHHhhCC---CCCCCHHHHHHHHHHhc
Confidence 6 44444433221 13445555555555553
No 240
>PLN02590 probable tyrosine decarboxylase
Probab=99.63 E-value=5.8e-15 Score=145.44 Aligned_cols=177 Identities=14% Similarity=0.054 Sum_probs=120.5
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCCc---eeEEECCChH-HHHHHHHhh----cC-------CCCeeeecCCCCCcccCc
Q 018231 88 EYIDMAESLCQKRALEAFRLDPEKWG---VNVQSLSGSP-SNFQVYTAL----LK-------PHDRIMALDLPHGGHLSH 152 (359)
Q Consensus 88 ~~~~~l~~~~~~~~a~~~g~~~~~~~---~~v~~tsG~~-a~~~~~~al----~~-------~Gd~Vl~~~~~~~~~~~~ 152 (359)
....++|+.+.+|+++++|.+...|. ..-++++|++ +++.++.+. .+ |.-.|++++..|.++..
T Consensus 166 Pa~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~aH~Sv~K- 244 (539)
T PLN02590 166 PAATELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQTHSSFRK- 244 (539)
T ss_pred chhHHHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEEecCCchHHHHH-
Confidence 45678999999999999999753110 1255677777 777655442 11 11133344544544321
Q ss_pred cccccccceeeeee---eeEEEecccCCCCCCCCHHHHHHHhhhhC-----CcEEEEc--CCCCCChhhHHHHHHHHHHc
Q 018231 153 GYQTDTKKISAVSI---FFETMPYRLNESTGYIDYDQLEKSATLFR-----PKLIVAG--ASAYARLYDYERIRKVCNKQ 222 (359)
Q Consensus 153 ~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~~d~e~l~~~i~~~~-----~k~v~l~--~~n~g~~~~l~~i~~la~~~ 222 (359)
.+.+.|. .++.||.+.+ +++.+|+++|+++|.+.+ |-+|+.+ .+++|.+.|+++|+++|++|
T Consensus 245 -------Aa~ilGlg~~~vr~Vp~d~~-~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDpl~~Ia~i~~~~ 316 (539)
T PLN02590 245 -------ACLIGGIHEENIRLLKTDSS-TNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIAKKY 316 (539)
T ss_pred -------HHHHcCCCcccEEEEeCCCC-CCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHh
Confidence 4455555 3556654322 357999999999996521 3345444 55589999999999999999
Q ss_pred CCEEEEeccccccccccCCC---CCCCCCceEEEeCCCCcCCCCCc-eEEEEeCC
Q 018231 223 KAIMLADMAHISGLVAAGVI---PSPFEYADVVTTTTHKSLRGPRG-AMIFFRKG 273 (359)
Q Consensus 223 ~~~vivD~a~~~g~~~~~~~---~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~ 273 (359)
|+|++||+|++......... ..+++.+|.++.++|||+..|.+ |+++++++
T Consensus 317 g~WlHVDaA~GG~al~~~~~r~~~~Gie~ADSit~D~HK~l~~p~~cg~llvr~~ 371 (539)
T PLN02590 317 GIWLHVDAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFANQTCSPLWVKDR 371 (539)
T ss_pred CCeEEEecchhhhhhcChhhHHHhcCCccCCEEEECchhhcCcCcCEEEEEecCH
Confidence 99999999986655433211 12334689999999999999999 99999985
No 241
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=99.63 E-value=4.2e-15 Score=152.75 Aligned_cols=175 Identities=14% Similarity=0.100 Sum_probs=127.0
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhh-c-------CCCCeeeecCCCCCcccCcccccccc
Q 018231 88 EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL-L-------KPHDRIMALDLPHGGHLSHGYQTDTK 159 (359)
Q Consensus 88 ~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al-~-------~~Gd~Vl~~~~~~~~~~~~~~~~~~~ 159 (359)
++..++...+++|+++++|.+. +.+...+|+.+..+.+.++ . ...++|+++...|+++. .+
T Consensus 526 qG~lq~i~elq~~l~eltGmd~----~Sl~p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtnP--as----- 594 (939)
T TIGR00461 526 EGYQELIAQLEKWLCSITGFDA----ISLQPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTNP--AS----- 594 (939)
T ss_pred HHHHHHHHHHHHHHHHHHCCCC----cccCCchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcCH--HH-----
Confidence 4455566668899999999985 2355556665555333333 1 23467889888887763 22
Q ss_pred ceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhh--hCCcEEEEc-CCCCCChhh-HHHHHHHHHHcCCEEEEecccccc
Q 018231 160 KISAVSIFFETMPYRLNESTGYIDYDQLEKSATL--FRPKLIVAG-ASAYARLYD-YERIRKVCNKQKAIMLADMAHISG 235 (359)
Q Consensus 160 ~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~--~~~k~v~l~-~~n~g~~~~-l~~i~~la~~~~~~vivD~a~~~g 235 (359)
+...|.+++.++ .+ +++.+|+++|++++++ .++++|+++ ++|+|...+ +++|+++|+++|.++++|+||..+
T Consensus 595 -a~~~G~~Vv~V~--~d-~~G~iDle~L~~~i~~~~~~taaV~iT~pst~G~~e~~I~eI~~iah~~G~~v~VDgAq~~a 670 (939)
T TIGR00461 595 -AAMAGMQVVPVN--CD-QDGNIDLVDLKNKAEQHGDELAAVMVTYPSTHGVFEPTIQHACDIVHSFGGQVYLDGANMNA 670 (939)
T ss_pred -HHHCCCEEEEec--cC-CCCCcCHHHHHHHHhhcCCceEEEEEEeCCcCceecccHHHHHHHHHHcCCEEEEEecChhh
Confidence 345576676665 45 5789999999999974 378888887 777897766 999999999999999999999765
Q ss_pred ccccCC-CCCCCCCceEEEeCCCCcCC-----CCCc-eEEEEeCCcchhccC
Q 018231 236 LVAAGV-IPSPFEYADVVTTTTHKSLR-----GPRG-AMIFFRKGVKEINKQ 280 (359)
Q Consensus 236 ~~~~~~-~~~~~~~~D~v~~s~~K~l~-----gp~g-G~l~~~~~~~~~~~~ 280 (359)
...... ... ++|++++|.||+|+ |++| |++.+++.+.+.+.+
T Consensus 671 l~~l~~Pg~~---GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~L~~~lPg 719 (939)
T TIGR00461 671 QVGLTSPGDL---GADVCHLNLHKTFCIPHGGGGPGMGPIGVKSHLIPFLPK 719 (939)
T ss_pred CCCCCCcccc---CCCEEEecCCccCCCCCCCCCCCeEEEEEhhhchhhcCC
Confidence 544321 223 59999999999987 6666 999999875444443
No 242
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=99.62 E-value=1.1e-14 Score=142.42 Aligned_cols=176 Identities=16% Similarity=0.163 Sum_probs=128.1
Q ss_pred ccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccce
Q 018231 83 YYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKI 161 (359)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~ 161 (359)
+|+...+..++++++.+++....|+..+. .+|++|+|++ ++.+++..+++|||.|++-+++|.+... ..
T Consensus 127 ~y~~~~G~~~LR~~ia~~l~~~~g~~~~~--~~IiiT~G~q~al~l~~~~l~~pGd~v~vE~PtY~~~~~--------~~ 196 (459)
T COG1167 127 QYGPTAGLPELREAIAAYLLARRGISCEP--EQIVITSGAQQALDLLLRLLLDPGDTVLVEDPTYPGALQ--------AL 196 (459)
T ss_pred cCCCCCCcHHHHHHHHHHHHHhcCCccCc--CeEEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCcHHHHH--------HH
Confidence 34445677888888888888677774332 2599999999 8888889999999999999966555433 45
Q ss_pred eeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc--CCC-CCChhhH---HHHHHHHHHcCCEEEEecccccc
Q 018231 162 SAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG--ASA-YARLYDY---ERIRKVCNKQKAIMLADMAHISG 235 (359)
Q Consensus 162 ~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~--~~n-~g~~~~l---~~i~~la~~~~~~vivD~a~~~g 235 (359)
+..|.++..|| +| +..+|+|+|++.+...++|+++++ .+| ||...+. ++|.++|++||+++|.|...+.-
T Consensus 197 ~~~g~~~~~vp--~d--~~G~~~e~le~~~~~~~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el 272 (459)
T COG1167 197 EALGARVIPVP--VD--EDGIDPEALEEALAQWKPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGEL 272 (459)
T ss_pred HHcCCcEEecC--CC--CCCCCHHHHHHHHhhcCCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcchhh
Confidence 56676665454 54 456899999999987789999997 555 7866654 48999999999999999986432
Q ss_pred ccccCCCCCCC-----CCceEEEeCCCCcC-CCCCceEEEEeCC
Q 018231 236 LVAAGVIPSPF-----EYADVVTTTTHKSL-RGPRGAMIFFRKG 273 (359)
Q Consensus 236 ~~~~~~~~~~~-----~~~D~v~~s~~K~l-~gp~gG~l~~~~~ 273 (359)
.... ....++ .+--+.++|++|.+ .|.+.|+|+.+++
T Consensus 273 ~~~~-~p~~~l~~ld~~~rViy~gSFSK~l~PglRlG~vv~p~~ 315 (459)
T COG1167 273 RYDG-PPPPPLKALDAPGRVIYLGSFSKTLAPGLRLGYVVAPPE 315 (459)
T ss_pred hcCC-CCCCChHhhCCCCCEEEEeeehhhcccccceeeeeCCHH
Confidence 2211 111111 13458999999987 3555599999883
No 243
>PRK04781 histidinol-phosphate aminotransferase; Provisional
Probab=99.62 E-value=1.5e-14 Score=137.76 Aligned_cols=162 Identities=14% Similarity=0.038 Sum_probs=112.4
Q ss_pred HHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHhhcCCC-CeeeecCCCCCcccCccccccccceeeeeeeeEEEecc
Q 018231 97 CQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPH-DRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYR 174 (359)
Q Consensus 97 ~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~al~~~G-d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 174 (359)
+++.+++++|++++ +|++|+|++ ++..++.+++.+| |.|+++++. |..+...+...|.++..+++.
T Consensus 64 lr~~ia~~~~~~~~----~I~~t~G~~~~l~~~~~~~~~~g~~~vlv~~p~--------y~~~~~~~~~~g~~~~~v~~~ 131 (364)
T PRK04781 64 LRSALAALYGCAPE----QLLIGRGSDEAIDLLVRALCVPGRDAVLVTPPV--------FGMYAVCARLQNAPLVEVPLV 131 (364)
T ss_pred HHHHHHHHhCcChH----HEEEeCCHHHHHHHHHHHhcCCCCCeEEEcCCC--------hHHHHHHHHHcCCEEEEEecC
Confidence 55788888899875 499999999 8777888899999 789988843 333333344567777666542
Q ss_pred cCCCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhhHHHHHHHHHH--cCCEEEEeccccccccccCCCCCCC-C--
Q 018231 175 LNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNK--QKAIMLADMAHISGLVAAGVIPSPF-E-- 247 (359)
Q Consensus 175 ~~~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~l~~i~~la~~--~~~~vivD~a~~~g~~~~~~~~~~~-~-- 247 (359)
.+.+++.+|++++++.+...++++++++ |+| ||...+.+++.++++. ++++||+|+++..-. ... ....+ .
T Consensus 132 ~~~~~~~~d~~~l~~~~~~~~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~~~~~iI~Deay~~f~-~~~-~~~~~~~~~ 209 (364)
T PRK04781 132 DGADGFHADVPAIVAAALASNAKLVFLCSPSNPAGSAIALDQIERALQALQGKALVVVDEAYGEFS-DVP-SAVGLLARY 209 (364)
T ss_pred CCccCCCcCHHHHHHHHhccCCeEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCcchhhc-CCc-chHHHHhhC
Confidence 2223457899998665533389999997 888 9988888888777764 478999999975221 100 00000 0
Q ss_pred CceEEEeCCCCcCC--CCCceEEEEeC
Q 018231 248 YADVVTTTTHKSLR--GPRGAMIFFRK 272 (359)
Q Consensus 248 ~~D~v~~s~~K~l~--gp~gG~l~~~~ 272 (359)
.--+++.|++|.|+ |.+-|+++.++
T Consensus 210 ~~vi~~~SfSK~~gl~GlRvGy~v~~~ 236 (364)
T PRK04781 210 DNLAVLRTLSKAHALAAARIGSLIANA 236 (364)
T ss_pred CCEEEEecChhhcccccceeeeeeCCH
Confidence 12488999999874 55559999877
No 244
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=99.62 E-value=1.5e-15 Score=139.20 Aligned_cols=190 Identities=18% Similarity=0.242 Sum_probs=128.7
Q ss_pred CCCCCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhhc
Q 018231 54 SENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALL 133 (359)
Q Consensus 54 ~~~~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al~ 133 (359)
+++ +.|+++++|.+..... ..|+......+++ +.++++||.+. .+++.+|+.+|..++++++
T Consensus 4 SD~-~~~~m~~a~~~a~~gd--------~~Yg~D~~~~~l~----~~i~~l~g~e~-----a~f~~sGT~An~~al~~~~ 65 (290)
T PF01212_consen 4 SDT-PTPAMLEAMAAANVGD--------DAYGEDPTTARLE----ERIAELFGKEA-----ALFVPSGTMANQLALRAHL 65 (290)
T ss_dssp -SS-S-HHEEHHHHHTTSB---------CCTTSSHHHHHHH----HHHHHHHTSSE-----EEEESSHHHHHHHHHHHHH
T ss_pred ccC-CCHHHHHHHHccccCC--------cccCCChhHHHHH----HHHHHHcCCCE-----EEEeCCCChHHHHHHHHHH
Confidence 445 7788999986554331 1256556666665 88889999875 3555555559999999999
Q ss_pred CCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhh-----hCCcEEEEc-CCCC-
Q 018231 134 KPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL-----FRPKLIVAG-ASAY- 206 (359)
Q Consensus 134 ~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~-----~~~k~v~l~-~~n~- 206 (359)
+|++.|++....|-.+...+. ...+.|.++..++ .+ +++.+|+++|++.+.+ .++++|.+. ++|.
T Consensus 66 ~~~~~vi~~~~aHi~~~E~ga-----~~~~~G~~~~~l~--~~-~~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~ 137 (290)
T PF01212_consen 66 RPGESVICADTAHIHFDETGA-----IEELSGAKLIPLP--SD-DDGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELA 137 (290)
T ss_dssp HTTEEEEEETTEHHHHSSTTH-----HHHHTTCEEEEEB--EC-TGTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTT
T ss_pred hcCCceeccccceeeeeccch-----hhHhcCcEEEECC--Cc-ccCCCCHHHHHHHhhhccccCCCccEEEEEecCcCC
Confidence 999999988753332222211 1245676554443 33 3389999999999976 357888887 7776
Q ss_pred -CChh---hHHHHHHHHHHcCCEEEEecccccc------ccccCCCCCCCCCceEEEeCCCCcCCCCCceEEEEeCC
Q 018231 207 -ARLY---DYERIRKVCNKQKAIMLADMAHISG------LVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKG 273 (359)
Q Consensus 207 -g~~~---~l~~i~~la~~~~~~vivD~a~~~g------~~~~~~~~~~~~~~D~v~~s~~K~l~gp~gG~l~~~~~ 273 (359)
|.+. ++++|.++|++||+.++.|+|..+. ..+.++. .++|++++|++|.+++|.|++++++++
T Consensus 138 GG~~~s~~el~ai~~~a~~~gl~lhmDGARl~~a~~~~~~~~~e~~----~~~D~v~~~~tK~~g~~~Gavl~~~~~ 210 (290)
T PF01212_consen 138 GGTVYSLEELRAISELAREHGLPLHMDGARLANAAAALGVSLAEIA----AGADSVSFGGTKNGGAPGGAVLAGNKE 210 (290)
T ss_dssp TSB---HHHHHHHHHHHHHHT-EEEEEETTHHHHHCHHHHHHHHHH----TTSSEEEEETTSTT-SSSEEEEEESHH
T ss_pred CCeeCCHHHHHHHHHHHHhCceEEEEehhhHHHhhhcccccHHHHh----hhCCEEEEEEEcccccccceEEEechH
Confidence 7554 5778888999999999999996432 2222221 249999999999999998899999884
No 245
>PRK09440 avtA valine--pyruvate transaminase; Provisional
Probab=99.62 E-value=3.4e-14 Score=137.85 Aligned_cols=213 Identities=13% Similarity=0.094 Sum_probs=129.2
Q ss_pred hcCceeeCCCCCC----cHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCC--CCCCCceeEEEC
Q 018231 46 WKGLELIPSENFT----SVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRL--DPEKWGVNVQSL 119 (359)
Q Consensus 46 ~~~i~l~~~~~~~----~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~--~~~~~~~~v~~t 119 (359)
.+.|+|..+.... .+.+.+++.+.+...- -......|+...+..++++++.+++.+.+|. +++ +|++|
T Consensus 30 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~v~~~----~I~it 103 (416)
T PRK09440 30 PGAIMLGGGNPAHIPEMEDYFRDLLADLLASGK--LTEALGNYDGPQGKDELIEALAALLNERYGWNISPQ----NIALT 103 (416)
T ss_pred CCceeccCCCCCccCCHHHHHHHHHHHHhcCcc--cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCChh----hEEEc
Confidence 3568887655421 2345566665544310 0011123455566778888888888887775 443 59999
Q ss_pred CChH-HHHHHHHhhcC-----CCCeeee-cCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhh
Q 018231 120 SGSP-SNFQVYTALLK-----PHDRIMA-LDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSAT 192 (359)
Q Consensus 120 sG~~-a~~~~~~al~~-----~Gd~Vl~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~ 192 (359)
+|++ ++..++.++++ +||.|++ .+|+|+++..... .. + ...+.....++++.+...+.+|+++++ +.
T Consensus 104 ~Ga~~al~~~~~~l~~~~~~~~gd~v~i~~~P~y~~y~~~~~--~~-~-~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~ 177 (416)
T PRK09440 104 NGSQSAFFYLFNLFAGRRADGSLKKILFPLAPEYIGYADAGL--EE-D-LFVSYRPNIELLPEGQFKYHVDFEHLH--ID 177 (416)
T ss_pred cChHHHHHHHHHHHhccccCCCCCeEEEecCCCchhhHHHhh--cc-C-ceeecccccccccccccccCCCHHHcc--cC
Confidence 9999 88878888875 6999999 6866665432110 00 0 011222222332221013578999987 34
Q ss_pred hhCCcEEEEc-CCC-CCChhh---HHHHHHHHHHcCCEEEEecccccccccc---CCCCCCCCCceEEEeCCCCcC-CCC
Q 018231 193 LFRPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAA---GVIPSPFEYADVVTTTTHKSL-RGP 263 (359)
Q Consensus 193 ~~~~k~v~l~-~~n-~g~~~~---l~~i~~la~~~~~~vivD~a~~~g~~~~---~~~~~~~~~~D~v~~s~~K~l-~gp 263 (359)
+ ++++++++ |+| ||...+ +++|.++|++++++||+|++++...... +... ....--+++.|++|.. .|.
T Consensus 178 ~-~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~-~~~~~vI~~~SfSK~~~pGl 255 (416)
T PRK09440 178 E-DTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGPPFPGIIFSEATP-LWNPNIILCMSLSKLGLPGV 255 (416)
T ss_pred C-CceEEEEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCccccCCCcchhhcCc-cccCCeEEEecccccCCCcc
Confidence 4 78888888 888 996655 6788889999999999999985211100 1100 0011347889999951 233
Q ss_pred CceEEEEeC
Q 018231 264 RGAMIFFRK 272 (359)
Q Consensus 264 ~gG~l~~~~ 272 (359)
+-|+++.++
T Consensus 256 RiG~~i~~~ 264 (416)
T PRK09440 256 RCGIVIADE 264 (416)
T ss_pred eEEEEeCCH
Confidence 339998876
No 246
>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type. This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.
Probab=99.61 E-value=1.1e-14 Score=137.97 Aligned_cols=243 Identities=9% Similarity=0.048 Sum_probs=150.0
Q ss_pred eeeCCCCCCcHH-HHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-HHHH
Q 018231 50 ELIPSENFTSVS-VMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQ 127 (359)
Q Consensus 50 ~l~~~~~~~~~~-v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~ 127 (359)
.+.+|++..-|. .++++.+.+.... + .+.++ .++-+.+.+.++++++.+.+. ..++++++++ ++.+
T Consensus 6 ~f~~gp~~~~~~~~~~~~~~~~~~~~--------H-Rs~~F-~~i~~e~~~~L~~l~~~~~~~--~v~~l~GsGT~a~Ea 73 (374)
T TIGR01365 6 CFSSGPCAKRPGWSIEELKNAPLGRS--------H-RSKLG-KEKLAEAIKKTREMLGVPADY--LIGIVPASDTGAVEM 73 (374)
T ss_pred CcCCCccCCCchhhHHHHhhhhcccC--------c-CCHHH-HHHHHHHHHHHHHHhCCCCCc--EEEEECCchHHHHHH
Confidence 456677766566 6666665433311 1 12233 344445789999999984332 2344455555 9999
Q ss_pred HHHhhc-CCCCeeeecCCCCCcccCccccccccceeeeee-eeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc--C
Q 018231 128 VYTALL-KPHDRIMALDLPHGGHLSHGYQTDTKKISAVSI-FFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG--A 203 (359)
Q Consensus 128 ~~~al~-~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~--~ 203 (359)
++.+++ ++||+|++.. .++..+ ....++..|. ++..+. .. .+..+|+++++. +.. |.++ .
T Consensus 74 a~~nl~~~~g~~vLv~g-----~FG~r~--~~eia~~~g~~~v~~l~--~~-~g~~~~~~~ve~-----~~~-v~~vhnE 137 (374)
T TIGR01365 74 ALWSMLGCRGVDVLAWE-----SFGKGW--VTDVTKQLKLPDVRVLE--AE-YGKLPDLKKVDF-----KND-VVFTWNG 137 (374)
T ss_pred HHHHcCCCCCCeEEEEC-----HHHHHH--HHHHHHhcCCCCcEEEc--CC-CCCCCCHHHcCC-----CCC-EEEecCC
Confidence 999998 5899999743 222221 1123334565 355453 22 456789999872 122 3344 5
Q ss_pred CCCCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEeCCCCcCCCCCc-eEEEEeCCcchh-cc-C
Q 018231 204 SAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEI-NK-Q 280 (359)
Q Consensus 204 ~n~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~-~~-~ 280 (359)
+.||...|++++...+ +++++++|++.++|..++++.. +|++++|++|+|++|+| ++++++++.... .. .
T Consensus 138 TSTGv~npv~~i~~~~--~~~lliVDavSs~g~~~l~~d~-----iDv~~tgsQK~L~~ppGls~v~vs~~Al~~~~~~~ 210 (374)
T TIGR01365 138 TTSGVRVPNGDFIPAD--REGLTICDATSAAFAQDLDYHK-----LDVVTFSWQKVLGGEGAHGMLILSPRAVARLESYT 210 (374)
T ss_pred Cchheecccccccccc--CCCcEEEEccchhcCCCCChhH-----CcEEEEechhccCCCCceEEEEECHHHHHHHhhcC
Confidence 5588999987665322 5899999999999999987763 89999999999999999 999999864222 11 1
Q ss_pred ---CcchhhhHHHh--hccccC-CCCCCCCcHHHHHHHHHHHHHHhccccchh
Q 018231 281 ---GKEVFYDYEEK--INQAVF-PGLQGGPHNHTITGLAVALKQVCTLITFSH 327 (359)
Q Consensus 281 ---g~~~~~~~~~~--~~~~~~-~~~~gt~~~~~i~al~~Al~~~~~~~~~~~ 327 (359)
.....+++... +..... .....||+++.+.++..+++.++++++.++
T Consensus 211 ~y~~~~~~~~~~~~~~~~~~~~~~~t~~TP~v~~l~a~~~~l~~i~~egGle~ 263 (374)
T TIGR01365 211 PAWPLPKIFRLTKGGKLNKKIFEGSTINTPSMLCVEDWLDALKWAESIGGLKP 263 (374)
T ss_pred CCCCChhhhccccccchhhhhhcCCCCCChHHHHHHHHHHHHHHHHHccCHHH
Confidence 01111111110 000001 123478999999999999988887644433
No 247
>PRK07582 cystathionine gamma-lyase; Validated
Probab=99.61 E-value=4.6e-15 Score=141.25 Aligned_cols=149 Identities=16% Similarity=0.132 Sum_probs=103.3
Q ss_pred HHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccC
Q 018231 97 CQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLN 176 (359)
Q Consensus 97 ~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 176 (359)
+++.++++++ . + .+++++|+.++..++.+++++||+|+++++.|.+..... .......|++++.++ .+
T Consensus 56 Le~~lA~l~~--~-~---~v~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~~~~~~----~~~l~~~G~~v~~v~--~~ 123 (366)
T PRK07582 56 LEAALGELEG--A-E---ALVFPSGMAAITAVLRALLRPGDTVVVPADGYYQVRALA----REYLAPLGVTVREAP--TA 123 (366)
T ss_pred HHHHHHHHcC--C-C---EEEECCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHH----HHHHhcCeEEEEEEC--CC
Confidence 3377777772 2 2 488888888777788889999999999986664432110 001122465565553 33
Q ss_pred CCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhhHHHHHHHHHHcCCEEEEecccccc--ccccCCCCCCCCCceEE
Q 018231 177 ESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISG--LVAAGVIPSPFEYADVV 252 (359)
Q Consensus 177 ~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g--~~~~~~~~~~~~~~D~v 252 (359)
+. .+ .+.+ ++++|+++ |+| +|.+.|+++|.++|+++|+++++|++|+.. ..+.+ . ++|++
T Consensus 124 -~~----~~----~~~~-~t~lV~le~p~NPtg~v~di~~I~~~a~~~g~~lvVD~t~~~~~~~~p~~---~---g~Div 187 (366)
T PRK07582 124 -GM----AE----AALA-GADLVLAETPSNPGLDVCDLAALAAAAHAAGALLVVDNTTATPLGQRPLE---L---GADLV 187 (366)
T ss_pred -Ch----HH----Hhcc-CceEEEEECCCCCCCCccCHHHHHHHHHHcCCEEEEECCCCCccccCchh---c---CCcEE
Confidence 11 11 2234 78999987 777 778889999999999999999999998532 22211 2 48999
Q ss_pred EeCCCCcCCCCCc---eEEEEeCC
Q 018231 253 TTTTHKSLRGPRG---AMIFFRKG 273 (359)
Q Consensus 253 ~~s~~K~l~gp~g---G~l~~~~~ 273 (359)
++|++|+++|+.| |+++++++
T Consensus 188 v~S~sK~l~G~~g~~~G~v~~~~~ 211 (366)
T PRK07582 188 VASDTKALTGHSDLLLGYVAGRDP 211 (366)
T ss_pred EecccccccCCCCeeEEEEEcCcH
Confidence 9999999988776 88887653
No 248
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=99.61 E-value=1.4e-14 Score=136.23 Aligned_cols=184 Identities=18% Similarity=0.154 Sum_probs=117.7
Q ss_pred cCceeeCCCCCCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-HH
Q 018231 47 KGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SN 125 (359)
Q Consensus 47 ~~i~l~~~~~~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~ 125 (359)
+.++|..++++.++.+.+...+.+. .|+.... .+ +++++++++|++++ +|++|+|++ ++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~y~~~~~-~~----lr~~la~~~~~~~~----~i~~t~G~~~~i 77 (330)
T TIGR01140 18 DWLDFSTGINPLGPPVPPIPASAWA-----------RYPDPEY-DE----LRAAAAAYYGLPAA----SVLPVNGAQEAI 77 (330)
T ss_pred heeEccccCCCCCCChhhcchHHHh-----------hCCCccH-HH----HHHHHHHHhCCChh----hEEECCCHHHHH
Confidence 4588888887655433333222211 1222232 33 55888888998765 499999999 66
Q ss_pred HHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc-CC
Q 018231 126 FQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-AS 204 (359)
Q Consensus 126 ~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~-~~ 204 (359)
..+ ..++.+| .|++.++.|.++.. .....|.++..++ |++++++.+. ++++++++ |+
T Consensus 78 ~~~-~~~l~~g-~vl~~~p~y~~~~~--------~~~~~g~~~~~~~----------d~~~l~~~~~--~~~~v~i~~p~ 135 (330)
T TIGR01140 78 YLL-PRLLAPG-RVLVLAPTYSEYAR--------AWRAAGHEVVELP----------DLDRLPAALE--ELDVLVLCNPN 135 (330)
T ss_pred HHH-HHHhCCC-eEEEeCCCcHHHHH--------HHHHcCCEEEEeC----------CHHHHHhhcc--cCCEEEEeCCC
Confidence 644 4446788 68888865554422 3334455443332 7899998884 57887777 88
Q ss_pred C-CCChhh---HHHHHHHHHHcCCEEEEeccccccccccCCCCC-CCCCceEEEeCCCCcCCCCC--ceEEEEeC
Q 018231 205 A-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPS-PFEYADVVTTTTHKSLRGPR--GAMIFFRK 272 (359)
Q Consensus 205 n-~g~~~~---l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~-~~~~~D~v~~s~~K~l~gp~--gG~l~~~~ 272 (359)
| +|...+ +++|+++|+++|+++|+|+++............ ...+.++++.|++|+|+.|. -|++++++
T Consensus 136 NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~ 210 (330)
T TIGR01140 136 NPTGRLIPPETLLALAARLRARGGWLVVDEAFIDFTPDASLAPQAARFPGLVVLRSLTKFFGLAGLRLGFVVAHP 210 (330)
T ss_pred CCCCCCCCHHHHHHHHHHhHhcCCEEEEECcccccCCccchhhHhccCCCEEEEEecchhhcCchhhhhheeCCH
Confidence 8 897776 667788889999999999998533211111110 00135799999999885332 29999877
No 249
>PRK07505 hypothetical protein; Provisional
Probab=99.60 E-value=1e-13 Score=133.89 Aligned_cols=235 Identities=13% Similarity=0.078 Sum_probs=140.5
Q ss_pred CceeeCCCCC---CcHHHHHHHHhhhhccCC-CCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH
Q 018231 48 GLELIPSENF---TSVSVMQAVGSVMTNKYS-EGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP 123 (359)
Q Consensus 48 ~i~l~~~~~~---~~~~v~~al~~~~~~~~~-~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~ 123 (359)
.+++.+.... .+|+|++++.+.+.. +. .+...... ....+....+++.++++++. . .++++||++
T Consensus 48 ~ld~~s~~~lgl~~~p~v~~A~~~~l~~-~g~~~~~~~~~----~~~~~~~~~l~~~la~~~~~-~-----~~~~~sG~~ 116 (402)
T PRK07505 48 FVNFVSCSYLGLDTHPAIIEGAVDALKR-TGSLHLSSSRT----RVRSQILKDLEEALSELFGA-S-----VLTFTSCSA 116 (402)
T ss_pred EEEeecCCccCCCCCHHHHHHHHHHHHH-hCCCCCCccch----hhhhHHHHHHHHHHHHHhCC-C-----EEEECChHH
Confidence 4677654332 289999999998864 31 01111111 01122233466889999987 2 388889988
Q ss_pred HHHHHHHhh----cCCCC-eeeecC-CCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCc
Q 018231 124 SNFQVYTAL----LKPHD-RIMALD-LPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPK 197 (359)
Q Consensus 124 a~~~~~~al----~~~Gd-~Vl~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k 197 (359)
++..++..+ ..+|+ .|++.+ ..|++... .. .....+.+++.++ . .|++++++.+++ +++
T Consensus 117 a~~~ai~~~~~~~~~~~~~~vi~~~~~~H~s~~~-~~-----~~~~~~~~v~~~~--~------~d~~~l~~~~~~-~~~ 181 (402)
T PRK07505 117 AHLGILPLLASGHLTGGVPPHMVFDKNAHASLNI-LK-----GICADETEVETID--H------NDLDALEDICKT-NKT 181 (402)
T ss_pred HHHHHHHHHHhcccCCCCCCEEEEchhhhHhHHh-hh-----hhhhcCCeEEEeC--C------CCHHHHHHHHhc-CCC
Confidence 777555432 23343 244444 33443211 01 1111122333332 3 289999998876 677
Q ss_pred EEEEc-CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccc-cC----CCCCC--CCCceEEEeCCCCcCCCCCceEE
Q 018231 198 LIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVA-AG----VIPSP--FEYADVVTTTTHKSLRGPRGAMI 268 (359)
Q Consensus 198 ~v~l~-~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~-~~----~~~~~--~~~~D~v~~s~~K~l~gp~gG~l 268 (359)
+++++ |+| +|.+.++++|.++|+++|+++|+|++|+.+.+. .+ ....+ .....+++.|.+|.++++ ||++
T Consensus 182 ~~vl~~p~~~~G~~~~~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i~~~s~sK~~~~~-Gg~~ 260 (402)
T PRK07505 182 VAYVADGVYSMGGIAPVKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIAASLGKAFGAS-GGVI 260 (402)
T ss_pred EEEEEecccccCCcCCHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHHHcCCCCCCCeEEEEechhhhhcc-CeEE
Confidence 77777 777 888999999999999999999999999653221 11 01111 112457888999988654 6887
Q ss_pred EEeCCcchhccCCcchhhhHHHhhccccCCCCC-CCCcHHHHHHHHHHHHHHhcc
Q 018231 269 FFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQ-GGPHNHTITGLAVALKQVCTL 322 (359)
Q Consensus 269 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-gt~~~~~i~al~~Al~~~~~~ 322 (359)
++.++ ++.+.+.....+..+ ++++..+.+++.++++.+.++
T Consensus 261 ~~~~~-------------~~~~~~~~~~~~~t~~~~~~~~a~aa~~a~l~~~~~~ 302 (402)
T PRK07505 261 MLGDA-------------EQIELILRYAGPLAFSQSLNVAALGAILASAEIHLSE 302 (402)
T ss_pred EeCCH-------------HHHHHHHHhCCCceeCCCCCHHHHHHHHHHHHHHhcc
Confidence 76443 444544433333333 567778888888888765543
No 250
>PRK07049 methionine gamma-lyase; Validated
Probab=99.59 E-value=3e-14 Score=138.06 Aligned_cols=155 Identities=18% Similarity=0.184 Sum_probs=107.8
Q ss_pred HHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccC
Q 018231 97 CQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLN 176 (359)
Q Consensus 97 ~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 176 (359)
+++.++++.|.+. .+++++|..++..++.+++++||+|+++.+.|+++..... ......|+++..++ +
T Consensus 88 Le~~lA~leg~~~-----~iv~~sG~~Ai~~~l~al~~~Gd~Vv~~~p~Y~~~~~~~~----~~l~~~Gi~~v~~~---~ 155 (427)
T PRK07049 88 VEDRLAVYEGAES-----AALFSSGMSAIATTLLAFVRPGDVILHSQPLYGGTETLLA----KTFRNFGVGAVGFA---D 155 (427)
T ss_pred HHHHHHHHhCCCc-----EEEEccHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHH----HHHHhcCcEEEEEe---C
Confidence 4478889998663 3666666668887889999999999999966665422100 01122354432232 1
Q ss_pred CCCCCCCHHHHHHHhhh----hCCcEEEEc-CCC-CCChhhHHHHHHHHHH------cCCEEEEeccccccccccCCCCC
Q 018231 177 ESTGYIDYDQLEKSATL----FRPKLIVAG-ASA-YARLYDYERIRKVCNK------QKAIMLADMAHISGLVAAGVIPS 244 (359)
Q Consensus 177 ~~~~~~d~e~l~~~i~~----~~~k~v~l~-~~n-~g~~~~l~~i~~la~~------~~~~vivD~a~~~g~~~~~~~~~ 244 (359)
..|++++++.+.+ .++|+|+++ |+| +|.+.++++|.+++++ +++++++|++.+..... .
T Consensus 156 ----~~d~~~l~~~l~~~~~~~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety~~~~~~-----~ 226 (427)
T PRK07049 156 ----GLSEAAIGAAAEAAAAKGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTLLGPVFQ-----K 226 (427)
T ss_pred ----CCCHHHHHHHHHhhccCCCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCccccccC-----C
Confidence 1467788776642 378999998 888 8999999999999987 89999999985432211 1
Q ss_pred CCC-CceEEEeCCCCcCCCCCc---eEEEEeC
Q 018231 245 PFE-YADVVTTTTHKSLRGPRG---AMIFFRK 272 (359)
Q Consensus 245 ~~~-~~D~v~~s~~K~l~gp~g---G~l~~~~ 272 (359)
++. ++|+++.|++|+++|..| |+++.++
T Consensus 227 pl~~g~divv~S~SK~~gG~~glr~G~vv~~~ 258 (427)
T PRK07049 227 PLEHGADLSVYSLTKYVGGHSDLVAGAVLGRK 258 (427)
T ss_pred ccccCCCEEEEcCceeecCCCCcEEEEEECCH
Confidence 222 589999999999986544 8887665
No 251
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=99.59 E-value=2.7e-14 Score=135.86 Aligned_cols=175 Identities=20% Similarity=0.173 Sum_probs=116.7
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCCc---eeEEECCChH-HHHHHHHhh----c----CCC-----C-eeeecCCCCCcc
Q 018231 88 EYIDMAESLCQKRALEAFRLDPEKWG---VNVQSLSGSP-SNFQVYTAL----L----KPH-----D-RIMALDLPHGGH 149 (359)
Q Consensus 88 ~~~~~l~~~~~~~~a~~~g~~~~~~~---~~v~~tsG~~-a~~~~~~al----~----~~G-----d-~Vl~~~~~~~~~ 149 (359)
....++|+.+.+++++++|.+.+... ..-++|+|++ +|+.++.+. . ..| . .|++.+..|.++
T Consensus 75 P~~~~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~aH~S~ 154 (373)
T PF00282_consen 75 PAATEIEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQAHYSI 154 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS-THH
T ss_pred cccccchHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhcccccccccccccccccccHH
Confidence 55788999999999999999722100 1467778888 777655432 1 112 2 345555455544
Q ss_pred cCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhh--C---CcEEEEc--CCCCCChhhHHHHHHHHHHc
Q 018231 150 LSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF--R---PKLIVAG--ASAYARLYDYERIRKVCNKQ 222 (359)
Q Consensus 150 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~--~---~k~v~l~--~~n~g~~~~l~~i~~la~~~ 222 (359)
.. .+.+.|..++.|+ .+ +++.+|+++|++++.+. + +-+|+.+ .+++|.+.|+++|+++|+++
T Consensus 155 ~K--------aa~~lGlg~~~I~--~~-~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~l~~i~~i~~~~ 223 (373)
T PF00282_consen 155 EK--------AARILGLGVRKIP--TD-EDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDPLEEIADICEKY 223 (373)
T ss_dssp HH--------HHHHTTSEEEEE---BB-TTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-SHHHHHHHHHHC
T ss_pred HH--------hcceeeeEEEEec--CC-cchhhhHHHhhhhhcccccccccceeeeccCCCcccccccCHHHHhhhcccc
Confidence 22 5667777776665 55 56899999999988652 2 2134444 44489999999999999999
Q ss_pred CCEEEEeccccccccccCC-C--CCCCCCceEEEeCCCCcCCCCCc-eEEEEeCC
Q 018231 223 KAIMLADMAHISGLVAAGV-I--PSPFEYADVVTTTTHKSLRGPRG-AMIFFRKG 273 (359)
Q Consensus 223 ~~~vivD~a~~~g~~~~~~-~--~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~ 273 (359)
++++++|+|++...+.... . ..+++.+|.++.++|||++.|.+ |+++++++
T Consensus 224 ~~wlHVDaA~gg~~~~~~~~~~~~~gi~~adSit~d~HK~l~~P~~~~~~l~r~~ 278 (373)
T PF00282_consen 224 NIWLHVDAAYGGSALLSPEYRHLLFGIERADSITIDPHKWLGVPYGCGVLLVRDK 278 (373)
T ss_dssp T-EEEEEETTGGGGGGHCTTGGGGTTGGGESEEEEETTTTTS-SSS-EEEEESSG
T ss_pred ceeeeecccccccccccccccccccccccccccccchhhhhcCCccceeEEeecc
Confidence 9999999998653332221 1 12234699999999999999999 99999986
No 252
>PRK14808 histidinol-phosphate aminotransferase; Provisional
Probab=99.58 E-value=5.6e-14 Score=132.39 Aligned_cols=186 Identities=16% Similarity=0.104 Sum_probs=124.4
Q ss_pred cCceeeCCCCC--CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcC---CCCCCCceeEEECCC
Q 018231 47 KGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFR---LDPEKWGVNVQSLSG 121 (359)
Q Consensus 47 ~~i~l~~~~~~--~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g---~~~~~~~~~v~~tsG 121 (359)
+.++|..++++ +|+.+++++.+.+..... .+|+. ....+++ +.++++++ ++++ +|++|+|
T Consensus 20 ~~i~l~~~~~~~~~p~~~~~~~~~~~~~~~~------~~Y~~-~~~~~Lr----~aia~~~~~~~~~~~----~i~it~G 84 (335)
T PRK14808 20 DRTYLALNENPFPFPEDLVDEVFRRLNSDTL------RIYYD-SPDEELI----EKILSYLDTDFLSKN----NVSVGNG 84 (335)
T ss_pred ceeEecCCCCCCCCCHHHHHHHHHHhhhhhh------hcCCC-CChHHHH----HHHHHHhCCCCCCcc----eEEEcCC
Confidence 56899888875 688899998886543110 11222 1344555 55566655 6664 4999999
Q ss_pred hH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEE
Q 018231 122 SP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIV 200 (359)
Q Consensus 122 ~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~ 200 (359)
++ ++..++.++ |.|++++ |.|..+...+...|.++..++ .+ +++.+|.+. + + ++++++
T Consensus 85 a~~~i~~~~~~~----d~v~v~~--------P~y~~~~~~~~~~g~~~~~v~--~~-~~~~~~~~~----~-~-~~~~i~ 143 (335)
T PRK14808 85 ADEIIYVMMLMF----DRSVFFP--------PTYSCYRIFAKAVGAKFLEVP--LT-KDLRIPEVN----V-G-EGDVVF 143 (335)
T ss_pred HHHHHHHHHHHh----CcEEECC--------CCHHHHHHHHHHcCCeEEEec--CC-CcCCCChhH----c-c-CCCEEE
Confidence 99 887677776 7899888 555555556777787776665 44 345554332 2 2 578888
Q ss_pred Ec-CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCC-CC--CceEEEeCCCCcCC--CCCceEEEEeC
Q 018231 201 AG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP-FE--YADVVTTTTHKSLR--GPRGAMIFFRK 272 (359)
Q Consensus 201 l~-~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~-~~--~~D~v~~s~~K~l~--gp~gG~l~~~~ 272 (359)
++ |+| ||...+.+++.+++ +++++||+|+++..- .... ..+ .. ..-+++.|++|.++ |.+-|++++++
T Consensus 144 i~nP~NPTG~~~s~~~l~~l~-~~~~~ii~DE~Y~~f-~~~~--~~~~~~~~~~vi~~~S~SK~~~l~GlRvG~~v~~~ 218 (335)
T PRK14808 144 IPNPNNPTGHVFEREEIERIL-KTGAFVALDEAYYEF-HGES--YVDLLKKYENLAVIRTFSKAFSLAAQRIGYVVSSE 218 (335)
T ss_pred EeCCCCCCCCCcCHHHHHHHH-hcCCEEEEECchhhh-cCCc--hHHHHHhCCCEEEEEechhhccCcccceEEEEeCH
Confidence 87 888 99999999999998 589999999997531 1100 001 00 13478899999875 33449999877
No 253
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=99.58 E-value=3.6e-14 Score=133.42 Aligned_cols=147 Identities=12% Similarity=0.114 Sum_probs=98.3
Q ss_pred HHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEeccc
Q 018231 97 CQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL 175 (359)
Q Consensus 97 ~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 175 (359)
+++.+++++|.+ +|++|+|++ ++..++ .+.|||+|++++ |.|+.+...+...|.++..++ .
T Consensus 54 Lr~~ia~~~~~~------~I~it~Gs~~al~~~~--~~~~gd~v~v~~--------P~y~~~~~~~~~~g~~~~~v~--~ 115 (330)
T PRK05664 54 LEAAARAYYGAP------QLLPVAGSQAAIQALP--RLRAPGRVGVLS--------PCYAEHAHAWRRAGHQVRELD--E 115 (330)
T ss_pred HHHHHHHHhCCC------CEEECcCHHHHHHHHH--HccCCCEEEEcC--------CChHHHHHHHHHcCCeEEEec--h
Confidence 457888888864 399999999 766443 468999999999 555555555667776665443 2
Q ss_pred CCCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhh---HHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCce
Q 018231 176 NESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYAD 250 (359)
Q Consensus 176 ~~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~---l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D 250 (359)
+++++.++ ++++++++ |+| ||...+ +++|+++|++++++||+|+++....-........-..--
T Consensus 116 ---------~~~~~~~~--~~~~v~l~nP~NPTG~~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~~~~~s~~~~~~~~~v 184 (330)
T PRK05664 116 ---------AEVEAALD--SLDVLVVVNPNNPTGRRFDPARLLAWHARLAARGGWLVVDEAFMDNTPQHSLAACAHRPGL 184 (330)
T ss_pred ---------hhHhhhhc--CCCEEEEeCCcCCCCCccCHHHHHHHHHHHHhcCCEEEEECCcccCCCcccccccccCCCE
Confidence 34555553 67887776 888 996665 556666778999999999997432210011111000123
Q ss_pred EEEeCCCCcCC--CCCceEEEEeC
Q 018231 251 VVTTTTHKSLR--GPRGAMIFFRK 272 (359)
Q Consensus 251 ~v~~s~~K~l~--gp~gG~l~~~~ 272 (359)
+++.|++|.++ |.+-|+++.++
T Consensus 185 i~~~SfSK~~gl~GlRiG~~v~~~ 208 (330)
T PRK05664 185 IVLRSFGKFFGLAGARLGFVLAEP 208 (330)
T ss_pred EEEeeccccccCCCcceEEEEeCH
Confidence 88999999874 33349999876
No 254
>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]
Probab=99.58 E-value=1.1e-13 Score=128.39 Aligned_cols=231 Identities=13% Similarity=0.089 Sum_probs=145.3
Q ss_pred CCCCCCcHHHHHHHHhhhhccCCCCCCCCcccC-CchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHH
Q 018231 53 PSENFTSVSVMQAVGSVMTNKYSEGYPGARYYG-GNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYT 130 (359)
Q Consensus 53 ~~~~~~~~~v~~al~~~~~~~~~~g~~~~~~~~-~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~ 130 (359)
-+.+..++++++++...+.....- .++- .......+. .+.+.....+|+.. ++++++.+ +.+.++.
T Consensus 34 lG~s~~~~e~iea~~~~~~~~v~L-----e~~l~~g~~~~R~~-~~~~~~~~~~~aea------~~ivnnn~aAVll~~~ 101 (395)
T COG1921 34 LGRSLYSPEAIEAMKEAMRAPVEL-----ETDLKTGKRGARLT-ELAELLCGLTGAEA------AAIVNNNAAAVLLTLN 101 (395)
T ss_pred CCCccCCHHHHHHHHHHhccccee-----eeecccchhhHHHH-HHHHHHhcccchhh------eeeECCcHHHHHHHHh
Confidence 367788999999999888763211 1111 112222222 24455555555443 55566655 7776666
Q ss_pred hhcCCCCeeeecC-CCC-CcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc-CCCCC
Q 018231 131 ALLKPHDRIMALD-LPH-GGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASAYA 207 (359)
Q Consensus 131 al~~~Gd~Vl~~~-~~~-~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n~g 207 (359)
++.. +.+|++.- +.- +++ +.....+.+.|++++.+- ........+++.+|.+ +|++++=. .+|+|
T Consensus 102 al~~-~~EvVis~g~lV~gg~-----~~v~d~~~~aG~~l~EvG-----~tn~t~~~d~~~AIne-~ta~llkV~s~~~~ 169 (395)
T COG1921 102 ALAE-GKEVVVSRGELVEGGA-----FRVPDIIRLAGAKLVEVG-----TTNRTHLKDYELAINE-NTALLLKVHSSNYG 169 (395)
T ss_pred hhcc-CCeEEEEccccccCCC-----CChhHHHHHcCCEEEEec-----ccCcCCHHHHHHHhcc-CCeeEEEEeecccc
Confidence 7666 44555442 111 122 222335677887775552 2345688999999998 88887655 77776
Q ss_pred --ChhhHHHHHHHHHHcCCEEEEeccccccccc-cCCCCCCCCCceEEEeCCCCcCCCCCceEEEEeCCcchhccCCcch
Q 018231 208 --RLYDYERIRKVCNKQKAIMLADMAHISGLVA-AGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEV 284 (359)
Q Consensus 208 --~~~~l~~i~~la~~~~~~vivD~a~~~g~~~-~~~~~~~~~~~D~v~~s~~K~l~gp~gG~l~~~~~~~~~~~~g~~~ 284 (359)
...++++++++||++|+++++|.+...-.-. .++....-.|+|+|++|++|.|+||++|+|+.++
T Consensus 170 f~~~l~~~~l~~ia~~~~lpvivD~aSg~~v~~e~~l~~~la~GaDLV~~SgdKllgGPqaGii~GkK------------ 237 (395)
T COG1921 170 FTGMLSEEELVEIAHEKGLPVIVDLASGALVDKEPDLREALALGADLVSFSGDKLLGGPQAGIIVGKK------------ 237 (395)
T ss_pred ccccccHHHHHHHHHHcCCCEEEecCCccccccccchhHHHhcCCCEEEEecchhcCCCccceEechH------------
Confidence 3457889999999999999999984221111 1111111127999999999999999999999999
Q ss_pred hhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhcc
Q 018231 285 FYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTL 322 (359)
Q Consensus 285 ~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~~ 322 (359)
++.++++.... ++.=...-..++++.+||+.+...
T Consensus 238 --elI~~lq~~~l-~Ralrv~K~tla~l~~aLe~y~~~ 272 (395)
T COG1921 238 --ELIEKLQSHPL-KRALRVDKETLAALEAALELYLQP 272 (395)
T ss_pred --HHHHHHHhhhh-hhhhhcCcHhHHHHHHHHHHHcCc
Confidence 56665543321 111122346788999999988874
No 255
>PRK06434 cystathionine gamma-lyase; Validated
Probab=99.58 E-value=1.5e-14 Score=137.86 Aligned_cols=156 Identities=16% Similarity=0.183 Sum_probs=109.1
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeee
Q 018231 88 EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIF 167 (359)
Q Consensus 88 ~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~ 167 (359)
+..+++| +.++++.|.+. .+++.||+.|+.+++.+++++||+|+++...|++.+. .....+...|++
T Consensus 64 P~~~~lE----~~la~leg~~~-----av~~sSG~aAi~~al~all~~GD~Vl~~~~~yg~t~~----~~~~~~~~~Gi~ 130 (384)
T PRK06434 64 PTVQAFE----EKYAVLENAEH-----ALSFSSGMGAITSAILSLIKKGKRILSISDLYGQTFY----FFNKVLKTLGIH 130 (384)
T ss_pred hhHHHHH----HHHHHHhCCCc-----EEEeCCHHHHHHHHHHHHhCCCCEEEEecCccchHHH----HHHHHHHhcCcE
Confidence 4566666 77888999875 4888888888887888999999999998765554432 211223344655
Q ss_pred eEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCC
Q 018231 168 FETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP 245 (359)
Q Consensus 168 ~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~ 245 (359)
++.++ .++ .+.++ +++.++++|++. ++| ++.+.|+++|.++|++++ +++|++++.+... .+
T Consensus 131 v~fvd--~~~------~~~~~--l~~~~tklv~~e~~snpt~~v~Di~~I~~la~~~~--lvVD~t~~s~~~~-----~p 193 (384)
T PRK06434 131 VDYID--TDR------LNSLD--FDPSNYDLIYAESITNPTLKVPDIKNVSSFCHEND--VIVDATFASPYNQ-----NP 193 (384)
T ss_pred EEEEC--CCC------hhhee--ecCCCeeEEEEEcCCCCCceeecHHHHHHHHHHcC--eEEECCCCCcccC-----Cc
Confidence 55443 331 11221 233368999887 777 778899999999999998 4679998544332 12
Q ss_pred CC-CceEEEeCCCCcCCCCC---ceEEEEeCC
Q 018231 246 FE-YADVVTTTTHKSLRGPR---GAMIFFRKG 273 (359)
Q Consensus 246 ~~-~~D~v~~s~~K~l~gp~---gG~l~~~~~ 273 (359)
+. ++|++++|++|+++|+. ||+++++++
T Consensus 194 l~~gaDivv~S~tK~i~G~~d~~gG~vv~~~~ 225 (384)
T PRK06434 194 LDLGADVVIHSATKYISGHSDVVMGVAGTNNK 225 (384)
T ss_pred hhcCCCEEEeecccccCCCCCceEEEEecCcH
Confidence 22 59999999999998866 577777664
No 256
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=99.57 E-value=1.4e-13 Score=133.23 Aligned_cols=247 Identities=11% Similarity=0.067 Sum_probs=141.9
Q ss_pred cCceeeCCC-----CCCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCC
Q 018231 47 KGLELIPSE-----NFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSG 121 (359)
Q Consensus 47 ~~i~l~~~~-----~~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG 121 (359)
+.|++..+. ...+|.|.+++.+.+.... .++.. .+..+....+.+.++++++.+.+ .+++++|
T Consensus 37 ~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~~--~~~~~------~~~~~~~~~l~~~l~~~~~~~~~----~v~~~~s 104 (413)
T cd00610 37 RYLDFLSGIGVLNLGHNHPEVVEALKEQLAKLT--HFSLG------FFYNEPAVELAELLLALTPEGLD----KVFFVNS 104 (413)
T ss_pred EEEEcCccHHhhccCCCCHHHHHHHHHHHHhCc--CccCc------ccCCHHHHHHHHHHHHhCCCCCC----EEEEcCc
Confidence 457776542 1257899999998875411 11111 01122233466889999986544 4888888
Q ss_pred hH-HHHHHHHhh--cCCCCeeeecCCCCCcccCcccccc-----ccceeeeeeeeEEEecccCC---CCCCCCHHHHHHH
Q 018231 122 SP-SNFQVYTAL--LKPHDRIMALDLPHGGHLSHGYQTD-----TKKISAVSIFFETMPYRLNE---STGYIDYDQLEKS 190 (359)
Q Consensus 122 ~~-a~~~~~~al--~~~Gd~Vl~~~~~~~~~~~~~~~~~-----~~~~~~~g~~~~~v~~~~~~---~~~~~d~e~l~~~ 190 (359)
++ ++..++..+ ..++|+|++.+..|.+......... ..........+..++++... ..+..|+++|++.
T Consensus 105 gsea~~~al~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 184 (413)
T cd00610 105 GTEAVEAALKLARAYTGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEA 184 (413)
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccchhhHHHHHHHHHHH
Confidence 77 888888776 4689999999877666432111100 00000111122233321000 1234488999998
Q ss_pred hhh--hCCcEEEEcCCC--CCChhh----HHHHHHHHHHcCCEEEEecccccc-ccccC--CCCCCCCCceEEEeCCCCc
Q 018231 191 ATL--FRPKLIVAGASA--YARLYD----YERIRKVCNKQKAIMLADMAHISG-LVAAG--VIPSPFEYADVVTTTTHKS 259 (359)
Q Consensus 191 i~~--~~~k~v~l~~~n--~g~~~~----l~~i~~la~~~~~~vivD~a~~~g-~~~~~--~~~~~~~~~D~v~~s~~K~ 259 (359)
+++ .+++++++.+.+ +|...+ +++|.++|++||+++|+|++|+.. ..... ....+ ...|++++| |+
T Consensus 185 l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~~~~~~~~~-~~~d~~t~s--K~ 261 (413)
T cd00610 185 LEEHPEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMFAFEHFG-VEPDIVTLG--KG 261 (413)
T ss_pred HhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhhHhhcC-CCCCeEEEc--cc
Confidence 875 246677776444 576555 999999999999999999998631 11100 01111 025777665 99
Q ss_pred CCCCCc-eEEEEeCCcchhccCCcchhhhHHHhhc-cccCCCCCCCCcHHHHHHHHHHHHHHhcc
Q 018231 260 LRGPRG-AMIFFRKGVKEINKQGKEVFYDYEEKIN-QAVFPGLQGGPHNHTITGLAVALKQVCTL 322 (359)
Q Consensus 260 l~gp~g-G~l~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~gt~~~~~i~al~~Al~~~~~~ 322 (359)
++++-. |+++.++ ++.+.+. .........+.+....++..++++.+.++
T Consensus 262 l~~g~~~g~~~~~~--------------~~~~~~~~~~~~~~~t~~~~~~~~~a~~a~l~~l~~~ 312 (413)
T cd00610 262 LGGGLPLGAVLGRE--------------EIMDAFPAGPGLHGGTFGGNPLACAAALAVLEVLEEE 312 (413)
T ss_pred ccCccccEEEEEcH--------------HHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHhc
Confidence 975433 8888776 4455431 11111112344556677888889888764
No 257
>PLN02397 aspartate transaminase
Probab=99.57 E-value=1.1e-13 Score=134.53 Aligned_cols=176 Identities=17% Similarity=0.125 Sum_probs=109.3
Q ss_pred cCCchhHHHHHHHHHHHHHHHcCCC-CCCCc--eeEEECCChHHHHHHHHhhcCCCCeeeecCCCCCcccCccccccccc
Q 018231 84 YGGNEYIDMAESLCQKRALEAFRLD-PEKWG--VNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKK 160 (359)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~a~~~g~~-~~~~~--~~v~~tsG~~a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~ 160 (359)
|+...+..++++++.+++.+..+.. ++++. .+++.++|+..+...+.+++.|||+|++++|. |+.+...
T Consensus 87 Y~~~~G~~~LR~aia~~~~~~~~~~~~~~~i~~~~i~~g~Ga~~l~~~~~~~~~pGd~Vlv~~P~--------y~~y~~~ 158 (423)
T PLN02397 87 YLPIEGLAEFNKLSAKLAYGADSPAIKENRVATVQCLSGTGSLRLGAEFLARFYPGSTIYIPNPT--------WGNHHNI 158 (423)
T ss_pred CCCcCCCHHHHHHHHHHHcCCCCchhhcCeeEeeecccchHHHHHHHHHHHHhCCCCEEEEeCCC--------chhHHHH
Confidence 4555778888877777775443321 11110 01233344433343555666799999999944 4444445
Q ss_pred eeeeeeeeEEEecccCCCCCCCCHHHHHHHhhh--hCCcEEEEc-CCC-CCChh---hHHHHHHHHHHcCCEEEEecccc
Q 018231 161 ISAVSIFFETMPYRLNESTGYIDYDQLEKSATL--FRPKLIVAG-ASA-YARLY---DYERIRKVCNKQKAIMLADMAHI 233 (359)
Q Consensus 161 ~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~--~~~k~v~l~-~~n-~g~~~---~l~~i~~la~~~~~~vivD~a~~ 233 (359)
+...|.+++.+++. +++++.+|++.+++.+.+ .++++++++ |+| ||... .+++|+++|++||+++|+|+++.
T Consensus 159 ~~~~g~~~~~v~l~-~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~~~~vI~De~Y~ 237 (423)
T PLN02397 159 FRDAGVPVRTYRYY-DPKTRGLDFDGLLEDLKAAPDGSFVLLHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSAYQ 237 (423)
T ss_pred HHHcCCeEEEeecc-cCcCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccC
Confidence 66778777666541 223578999998887752 256777777 888 99554 56788899999999999999964
Q ss_pred ccccccCC--CCCC---C--CC-ceEEEeCCCCcCC--CCCceEEE
Q 018231 234 SGLVAAGV--IPSP---F--EY-ADVVTTTTHKSLR--GPRGAMIF 269 (359)
Q Consensus 234 ~g~~~~~~--~~~~---~--~~-~D~v~~s~~K~l~--gp~gG~l~ 269 (359)
. ....+. ...+ + .+ .-+++.|++|.++ |.+-|+++
T Consensus 238 ~-l~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~G~RvG~~v 282 (423)
T PLN02397 238 G-FASGDLDADAQSVRMFVEDGHEILVAQSYAKNMGLYGERVGALS 282 (423)
T ss_pred C-ccCCchhhhhHHHHHHHhcCCcEEEEEECcccCCCccccceEEE
Confidence 2 222110 0000 1 01 2377889999874 55559986
No 258
>KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism]
Probab=99.57 E-value=3.8e-14 Score=124.69 Aligned_cols=221 Identities=19% Similarity=0.227 Sum_probs=154.9
Q ss_pred CcHHHHHHHHhhhhccCCCCCCCCcccCCchh-HHHHHHHHHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhhcCCC
Q 018231 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEY-IDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPH 136 (359)
Q Consensus 58 ~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~-~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al~~~G 136 (359)
..|+++++-.+++.+ |..|..+.++--+.+. ...|| .+++++.+-+. .|+.-++..||..++.+++.|.
T Consensus 82 shPeii~a~~~alee-yGaGlssvrfIcGtq~iHk~LE----~kiAqfh~rED-----~ilypscfdANag~feail~pe 151 (417)
T KOG1359|consen 82 SHPEIINAGQKALEE-YGAGLSSVRFICGTQDIHKLLE----SKIAQFHGRED-----TILYPSCFDANAGAFEAILTPE 151 (417)
T ss_pred CChHHHHHHHHHHHH-hCCCccceeEEecchHHHHHHH----HHHHHHhCCCc-----eEEeccccccchHHHHHhcChh
Confidence 379999999998886 7666665555444333 34444 88999988764 4888888889999999999999
Q ss_pred CeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhh---hCCcEEEEc--CCCCCChhh
Q 018231 137 DRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL---FRPKLIVAG--ASAYARLYD 211 (359)
Q Consensus 137 d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~---~~~k~v~l~--~~n~g~~~~ 211 (359)
|.|+.....|.+.+. ++.+.. ....+|+-+++..+.+ .+-|+|+-. .+.-|.+.|
T Consensus 152 dAvfSDeLNhASIId--------GirLck------------ry~h~dv~~l~~~l~~a~k~r~klv~TDg~FSMDGdiaP 211 (417)
T KOG1359|consen 152 DAVFSDELNHASIID--------GIRLCK------------RYRHVDVFDLEHCLISACKMRLKLVVTDGVFSMDGDIAP 211 (417)
T ss_pred hhhhccccccchhhh--------hhHHHh------------hhccchhHHHHHHHHHhhhheEEEEEecceeccCCCccc
Confidence 999988888887764 222221 1124466666655442 355666654 566899999
Q ss_pred HHHHHHHHHHcCCEEEEeccccccccccC---CC-CCCC-CCceEEEeCCCCcCCCCCceEEEEeCCcchhccCCcchhh
Q 018231 212 YERIRKVCNKQKAIMLADMAHISGLVAAG---VI-PSPF-EYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFY 286 (359)
Q Consensus 212 l~~i~~la~~~~~~vivD~a~~~g~~~~~---~~-~~~~-~~~D~v~~s~~K~l~gp~gG~l~~~~~~~~~~~~g~~~~~ 286 (359)
+++|.+++++||.++++|++|+.|.+... .. ..+. ..+|++.....|.++|..||+..+++
T Consensus 212 l~ei~~La~kYgaLlfiDecHaTgf~G~tGrGt~E~~~vm~~vdiinsTLgKAlGga~GGyttgp~-------------- 277 (417)
T KOG1359|consen 212 LEEISQLAKKYGALLFIDECHATGFFGETGRGTAEEFGVMGDVDIINSTLGKALGGASGGYTTGPK-------------- 277 (417)
T ss_pred HHHHHHHHHhcCcEEEEeecccceeecCCCCChHHHhCCCCcceehhhhhhhhhcCCCCCCccCCh--------------
Confidence 99999999999999999999998776421 11 1111 25899999999999999999999988
Q ss_pred hHHHhhccccCCCCCCC-CcHHHHHHHHHHHHHHhcc
Q 018231 287 DYEEKINQAVFPGLQGG-PHNHTITGLAVALKQVCTL 322 (359)
Q Consensus 287 ~~~~~~~~~~~~~~~gt-~~~~~i~al~~Al~~~~~~ 322 (359)
.+...++....|..+.+ .+...+....+|++.+...
T Consensus 278 ~li~llrqr~RpylFSnslppavV~~a~ka~dllm~s 314 (417)
T KOG1359|consen 278 PLISLLRQRSRPYLFSNSLPPAVVGMAAKAYDLLMVS 314 (417)
T ss_pred hHHHHHHhcCCceeecCCCChhhhhhhHHHHHHHHhh
Confidence 44444444455666633 3333344445677777654
No 259
>PRK08354 putative aminotransferase; Provisional
Probab=99.57 E-value=9.9e-14 Score=129.39 Aligned_cols=179 Identities=12% Similarity=0.050 Sum_probs=119.5
Q ss_pred cCceeeCCCCCC-cHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-H
Q 018231 47 KGLELIPSENFT-SVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-S 124 (359)
Q Consensus 47 ~~i~l~~~~~~~-~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a 124 (359)
+.|+|..++|+. |+.+.+++.+.+.. . .+||. ... +++++++++|. +|++|+|++ +
T Consensus 9 ~~i~l~~~~np~~p~~~~~a~~~~~~~-~-~~yp~---------~~~----l~~~ia~~~~~-------~I~vt~G~~~a 66 (311)
T PRK08354 9 GLIDFSASVNPYPPEWLDEMFERAKEI-S-GRYTY---------YEW----LEEEFSKLFGE-------PIVITAGITEA 66 (311)
T ss_pred ceeEecCCCCCCCCHHHHHHHHHHHHH-h-hcCCC---------hHH----HHHHHHHHHCC-------CEEECCCHHHH
Confidence 458888887764 67788888776543 1 12321 122 45788888873 299999999 7
Q ss_pred HHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc-C
Q 018231 125 NFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-A 203 (359)
Q Consensus 125 ~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~-~ 203 (359)
+..++ .++.+||+|++++++|+ .+...+...|.++..+ .+|++.+++.++ ++++++++ |
T Consensus 67 l~~~~-~~~~~gd~vlv~~P~y~--------~~~~~~~~~g~~~~~~---------~~d~~~l~~~~~--~~~~vi~~~P 126 (311)
T PRK08354 67 LYLIG-ILALRDRKVIIPRHTYG--------EYERVARFFAARIIKG---------PNDPEKLEELVE--RNSVVFFCNP 126 (311)
T ss_pred HHHHH-HhhCCCCeEEEeCCCcH--------HHHHHHHHcCCEEeec---------CCCHHHHHHhhc--CCCEEEEecC
Confidence 76455 44559999999995444 4443455566555222 357899988775 46777776 8
Q ss_pred CC-CCChhh---HHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEeCCCCcCC--CCCceEEEE
Q 018231 204 SA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLR--GPRGAMIFF 270 (359)
Q Consensus 204 ~n-~g~~~~---l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~--gp~gG~l~~ 270 (359)
+| ||...+ +++|.++|+++|+++|+|+++..-.. .+. ... ...-+++.|.+|.|+ |.+-|++++
T Consensus 127 ~NPTG~~~~~~~l~~l~~~a~~~~~~li~De~y~~f~~-~~~-~~~-~~~vi~~~S~SK~~~l~GlRiG~~v~ 196 (311)
T PRK08354 127 NNPDGKFYNFKELKPLLDAVEDRNALLILDEAFIDFVK-KPE-SPE-GENIIKLRTFTKSYGLPGIRVGYVKG 196 (311)
T ss_pred CCCCCCccCHHHHHHHHHHhhhcCcEEEEeCcchhccc-ccc-ccC-CCcEEEEeccHhhcCCccceeeeeee
Confidence 88 896554 66777888999999999999743221 111 101 124588899999874 444498887
No 260
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=99.57 E-value=5.1e-14 Score=128.30 Aligned_cols=192 Identities=19% Similarity=0.269 Sum_probs=127.9
Q ss_pred CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhhcCCCC
Q 018231 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHD 137 (359)
Q Consensus 58 ~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al~~~Gd 137 (359)
+.|+++++|.++-.. +..-|+..+....++ +++++++|... .+++.||+.+|..++.+.++||+
T Consensus 12 ~~~~m~eam~~a~~~-------~~~~YG~D~~~~~~e----~~~ae~~g~~a-----~~Fv~sGT~aN~lal~~~~~~~~ 75 (342)
T COG2008 12 PTPEMREALAAANAV-------GDDVYGEDPTTNALE----QRIAELFGKEA-----ALFVPSGTQANQLALAAHCQPGE 75 (342)
T ss_pred CCHHHHHHHHhcccc-------CCCCCCCCHHHHHHH----HHHHHHhCCce-----EEEecCccHHHHHHHHHhcCCCC
Confidence 578999999886422 123356656666655 88999999832 35555666699999999999999
Q ss_pred eeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhh------CCcEEEEcCCC-CCChh
Q 018231 138 RIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF------RPKLIVAGASA-YARLY 210 (359)
Q Consensus 138 ~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~------~~k~v~l~~~n-~g~~~ 210 (359)
.|++-...|-.....+ +..+.+. ...++. .+..++.+++|+|++.+... .+.+++++.++ .|++.
T Consensus 76 ~vi~~~~aHi~~~E~G------a~~~~~~-~~~~~~-~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~te~GtVy 147 (342)
T COG2008 76 SVICHETAHIYTDECG------APEFFGG-GQKLPI-VPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVY 147 (342)
T ss_pred eEEEeccccceecccC------cHHHHcC-Cceecc-CCCCCCCcCHHHHHHhhcCCCcccCCCceEEEeeccCCCceec
Confidence 9998875555443322 2222221 111221 22257899999999987642 24455556444 68665
Q ss_pred h---HHHHHHHHHHcCCEEEEeccccccccc-cCCCCCCCC-CceEEEeCCCCcCCCCCceEEEEeCC
Q 018231 211 D---YERIRKVCNKQKAIMLADMAHISGLVA-AGVIPSPFE-YADVVTTTTHKSLRGPRGAMIFFRKG 273 (359)
Q Consensus 211 ~---l~~i~~la~~~~~~vivD~a~~~g~~~-~~~~~~~~~-~~D~v~~s~~K~l~gp~gG~l~~~~~ 273 (359)
+ +++|.++|+++|+.|++|+|..+.... .+.....+. ++|+++++++|.++.|.|++++.+.+
T Consensus 148 ~l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg~~~~~~~~~~D~v~~~~tK~g~~~~gAiv~gn~~ 215 (342)
T COG2008 148 PLDELEAISAVCKEHGLPLHMDGARLANALVALGVALKTIKSYVDSVSFCLTKGGGAPVGAIVFGNRD 215 (342)
T ss_pred CHHHHHHHHHHHHHhCCceeechHHHHHHHHHcCCCHHHHHhhCCEEEEecccCCcceeeeEEEcCHH
Confidence 5 567778899999999999997654432 222221222 69999999999988877777777763
No 261
>PRK05367 glycine dehydrogenase; Provisional
Probab=99.56 E-value=4.5e-14 Score=147.39 Aligned_cols=170 Identities=15% Similarity=0.092 Sum_probs=118.8
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCCceeEEECC-ChH-HHHHHH---Hhh-cCCCC----eeeecCCCCCcccCcccccc
Q 018231 88 EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLS-GSP-SNFQVY---TAL-LKPHD----RIMALDLPHGGHLSHGYQTD 157 (359)
Q Consensus 88 ~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~ts-G~~-a~~~~~---~al-~~~Gd----~Vl~~~~~~~~~~~~~~~~~ 157 (359)
++..++...+++++++++|.+. +.+.. |++ ++.+.+ +++ .++|| +|++++..|+++..
T Consensus 538 qG~l~~i~e~q~~l~eltG~d~------~sl~~~~ga~ge~agL~a~r~~~~~~G~~~r~~vlis~~aH~snp~------ 605 (954)
T PRK05367 538 AGYRELIDQLEAWLAEITGYDA------VSLQPNAGAQGEYAGLLAIRAYHESRGEGHRDVCLIPSSAHGTNPA------ 605 (954)
T ss_pred HHHHHHHHHHHHHHHHHHCCCC------EEECccHHHHHHHHHHHHHHHHhhccCCCCCCEEEEEchhhhhhHH------
Confidence 3344555568899999999974 44444 333 554333 333 36776 59999988887743
Q ss_pred ccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhh--CCcEEEEc-CCCCCC-hhhHHHHHHHHHHcCCEEEEecccc
Q 018231 158 TKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF--RPKLIVAG-ASAYAR-LYDYERIRKVCNKQKAIMLADMAHI 233 (359)
Q Consensus 158 ~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~--~~k~v~l~-~~n~g~-~~~l~~i~~la~~~~~~vivD~a~~ 233 (359)
.+...|.+++.++ .+ .++.+|+++|+++++++ ++.+|+++ +++.|. ..|+++|+++|+++|+++++|+||.
T Consensus 606 --sa~~~G~~vv~v~--~d-~~G~iD~~~L~~~i~~~~~~la~V~it~pst~G~~e~~I~eI~~i~h~~G~~v~VDgA~~ 680 (954)
T PRK05367 606 --SAVMAGMKVVVVA--CD-ENGNIDLDDLRAKAEEHADNLAAIMITYPSTHGVFEETIREICEIVHEHGGQVYLDGANM 680 (954)
T ss_pred --HHHHCCCEEEEEC--CC-CCCCcCHHHHHHHHhccCCCeEEEEEEcCCCCeeecCCHHHHHHHHHHcCCEEEEECcCh
Confidence 2345576776665 44 45789999999999763 35566666 555665 4789999999999999999999998
Q ss_pred ccccccCCCCCCCCCceEEEeCCCCcCCCCCc------eEEEEeCCcch
Q 018231 234 SGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG------AMIFFRKGVKE 276 (359)
Q Consensus 234 ~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g------G~l~~~~~~~~ 276 (359)
.+.+.... ....|+|++++++||||++|.| |++++++.+.+
T Consensus 681 ~al~~l~~--pg~~GADi~~~s~HK~f~~P~G~GGPg~G~l~vr~~l~p 727 (954)
T PRK05367 681 NAQVGLAR--PGDIGADVSHLNLHKTFCIPHGGGGPGVGPIGVKAHLAP 727 (954)
T ss_pred hhccCCCC--hhhcCCCEEEecCcccCCCCcCCCCCceEEEeecccccc
Confidence 66665431 1122599999999999864443 68999875443
No 262
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=99.56 E-value=6e-14 Score=140.85 Aligned_cols=195 Identities=17% Similarity=0.110 Sum_probs=137.5
Q ss_pred HHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEeccc
Q 018231 97 CQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL 175 (359)
Q Consensus 97 ~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 175 (359)
+++..++.||++. ..++++|+| +|.+++.+++.|||.||+....|.|++. ++.+.|+..+.+.-..
T Consensus 200 Ae~~aA~~fgAd~-----tyfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~~--------aLilsga~PVYl~P~~ 266 (713)
T PRK15399 200 AEEYIARTFGAEQ-----SYIVTNGTSTSNKIVGMYAAPAGSTLLIDRNCHKSLAH--------LLMMSDVVPIWLKPTR 266 (713)
T ss_pred HHHHHHHHhCCCc-----EEEEeCChHHHHHHHHHHhcCCCCEEEeecccHHHHHH--------HHHHcCCeeEEecccc
Confidence 5688999999986 488899999 9998999999999999999877777654 4556777666554222
Q ss_pred CCCC---CCCCH-----HHHHHHhhhh----CCcEEEEc-CCCCCChhhHHHHHHHHHHcCCEE-EEeccccccccccC-
Q 018231 176 NEST---GYIDY-----DQLEKSATLF----RPKLIVAG-ASAYARLYDYERIRKVCNKQKAIM-LADMAHISGLVAAG- 240 (359)
Q Consensus 176 ~~~~---~~~d~-----e~l~~~i~~~----~~k~v~l~-~~n~g~~~~l~~i~~la~~~~~~v-ivD~a~~~g~~~~~- 240 (359)
+ .. +.++. +.+++++.+. ++++++++ ++-.|...++++|+++| |+.+ ++|+||+.-....+
T Consensus 267 n-~~Gi~g~I~~~~~~~e~I~~~i~~~p~~~~p~~vvit~pTYdGi~yd~~~I~~~~---g~~~ilvDEAhgah~~F~p~ 342 (713)
T PRK15399 267 N-ALGILGGIPRREFTRDSIEEKVAATTQAQWPVHAVITNSTYDGLLYNTDWIKQTL---DVPSIHFDSAWVPYTHFHPI 342 (713)
T ss_pred c-ccCCcCCCChhhccHHHHHHHHHhCCCcCCceEEEEECCCCCceeeCHHHHHHHh---CCCEEEEeccchhhhhcCcc
Confidence 2 21 23455 8899888752 23577777 54489999999999998 6766 69999965332222
Q ss_pred CC-CCCCC---CceEE---EeCCCCcCCCCCc-eEEEEeCCcchhccCCcchhhhHHHhhccccCCCCCCCCcHHHHHHH
Q 018231 241 VI-PSPFE---YADVV---TTTTHKSLRGPRG-AMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGL 312 (359)
Q Consensus 241 ~~-~~~~~---~~D~v---~~s~~K~l~gp~g-G~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al 312 (359)
.. ..++. ++|.+ +.|.||.+++... ++|.++..+ + .++++....-....+|+++.++++
T Consensus 343 ~~~~sam~~~~~aD~~i~~tQStHKtL~alTQaS~iHvk~~v------------d-~~~~n~a~~m~~STSPsY~LmASL 409 (713)
T PRK15399 343 YQGKSGMSGERVPGKVIFETQSTHKMLAAFSQASLIHIKGEY------------D-EETFNEAFMMHTSTSPSYPIVASV 409 (713)
T ss_pred cCCcChhhCCCCCCeeeeeeeehhccccccchheeeeecCCC------------C-HHHHHHHHHHHcCCCcHHHHHHHH
Confidence 11 12221 46776 9999999988777 777776531 1 233333322223478999999999
Q ss_pred HHHHHHHhc
Q 018231 313 AVALKQVCT 321 (359)
Q Consensus 313 ~~Al~~~~~ 321 (359)
+.|..++..
T Consensus 410 D~a~~~m~~ 418 (713)
T PRK15399 410 ETAAAMLRG 418 (713)
T ss_pred HHHHHHHHh
Confidence 999998885
No 263
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=99.55 E-value=2e-14 Score=144.22 Aligned_cols=197 Identities=16% Similarity=0.091 Sum_probs=139.2
Q ss_pred HHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEeccc
Q 018231 97 CQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL 175 (359)
Q Consensus 97 ~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 175 (359)
+++..++.||++. ..++++|+| +|.+++.+++.+||.||+....|.|++. ++.+.|+..+.+....
T Consensus 200 Ae~~AA~~fgAd~-----tyfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~h--------aLilsga~PVYl~P~r 266 (714)
T PRK15400 200 AEEYIARVFNADR-----SYMVTNGTSTANKIVGMYSAPAGSTVLIDRNCHKSLTH--------LMMMSDVTPIYFRPTR 266 (714)
T ss_pred HHHHHHHHhCCCc-----EEEEeCchHHHHHHHHHHhcCCCCEEEeecccHHHHHH--------HHHHcCCeEEEecccc
Confidence 6688999999986 488899999 9998999999999999999877777654 4556777666554322
Q ss_pred CCCC---CCCC-----HHHHHHHhhhh-CCc---EEEEc-CCCCCChhhHHHHHHHHHHcCCEEEEeccccccccccCCC
Q 018231 176 NEST---GYID-----YDQLEKSATLF-RPK---LIVAG-ASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVI 242 (359)
Q Consensus 176 ~~~~---~~~d-----~e~l~~~i~~~-~~k---~v~l~-~~n~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~ 242 (359)
+ .. +.++ .+.+++++.+. +.+ .++++ ++-.|...+++.|+++|+.++ +++|+||+.-....+..
T Consensus 267 n-~~Gi~g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~pTYdG~~yd~~~I~~~~~~~~--ilvDEAwgah~~F~p~~ 343 (714)
T PRK15400 267 N-AYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNSTYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPIY 343 (714)
T ss_pred c-ccCCccCCCccccCHHHHHHHHHhCccccCccEEEEECCCCccEecCHHHHHHHhCCCC--EEEEccchhhhccCccc
Confidence 2 21 2344 89999998752 123 66676 554899999999999999887 79999996543222221
Q ss_pred --CCCC-CCc---e--EEEeCCCCcCCCCCc-eEEEEeCCcchhccCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHH
Q 018231 243 --PSPF-EYA---D--VVTTTTHKSLRGPRG-AMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLA 313 (359)
Q Consensus 243 --~~~~-~~~---D--~v~~s~~K~l~gp~g-G~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~ 313 (359)
..++ .++ | +++.|.||.+++... ++|.++..+ + .++++....-....+|+++.+++++
T Consensus 344 ~~~sam~~ga~~~~~i~vtQStHKtL~alTQaS~LHvkg~v------------d-~~~~n~a~~m~~STSPsY~l~ASLD 410 (714)
T PRK15400 344 EGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGDV------------N-EETFNEAYMMHTTTSPHYGIVASTE 410 (714)
T ss_pred CCcChhhcCCCCCCceEEEEchhhcccchhHHhHHHHcCCC------------C-HHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 2333 245 5 999999999988766 666564421 1 2333333222234789999999999
Q ss_pred HHHHHHhcc
Q 018231 314 VALKQVCTL 322 (359)
Q Consensus 314 ~Al~~~~~~ 322 (359)
.|..++..+
T Consensus 411 ~a~~~m~~~ 419 (714)
T PRK15400 411 TAAAMMKGN 419 (714)
T ss_pred HHHHHHHhh
Confidence 999988753
No 264
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=99.54 E-value=1.4e-13 Score=129.78 Aligned_cols=160 Identities=20% Similarity=0.188 Sum_probs=116.8
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeee
Q 018231 88 EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIF 167 (359)
Q Consensus 88 ~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~ 167 (359)
...+.+| +.++.+-|.+. .+.+.||..|+..++.+++++||+|++++..|++.+... .......|.+
T Consensus 63 PT~~~lE----~~~a~LEg~~~-----~~afsSGmaAI~~~~l~ll~~GD~vl~~~~~YG~t~~~~----~~~l~~~gi~ 129 (396)
T COG0626 63 PTRDALE----EALAELEGGED-----AFAFSSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLF----EKILQKFGVE 129 (396)
T ss_pred ccHHHHH----HHHHHhhCCCc-----EEEecCcHHHHHHHHHHhcCCCCEEEecCCccchHHHHH----HHHHHhcCeE
Confidence 4456655 77888877765 488999999888789999999999999987666554322 2222234544
Q ss_pred eEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCC
Q 018231 168 FETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP 245 (359)
Q Consensus 168 ~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~ 245 (359)
+..+ +.. |.+++++++.+.+||+|++. |+| +-.+.|+.+|+++|+++|+++++|.+.+.+... .|
T Consensus 130 ~~~~--d~~------~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfatP~~q-----~P 196 (396)
T COG0626 130 VTFV--DPG------DDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATPVLQ-----RP 196 (396)
T ss_pred EEEE--CCC------ChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCccccccc-----Ch
Confidence 4333 111 45666666663389999997 888 778999999999999999999999997655543 34
Q ss_pred CC-CceEEEeCCCCcCCCCCc---eEEEEeCC
Q 018231 246 FE-YADVVTTTTHKSLRGPRG---AMIFFRKG 273 (359)
Q Consensus 246 ~~-~~D~v~~s~~K~l~gp~g---G~l~~~~~ 273 (359)
+. |+|+++.|.+|.++|... |+++.+++
T Consensus 197 L~~GaDIVvhSaTKyl~GHsDvl~G~v~~~~~ 228 (396)
T COG0626 197 LELGADIVVHSATKYLGGHSDVLGGVVLTPNE 228 (396)
T ss_pred hhcCCCEEEEeccccccCCcceeeeEEecChH
Confidence 44 599999999999987655 65665664
No 265
>KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism]
Probab=99.53 E-value=1.7e-13 Score=125.21 Aligned_cols=223 Identities=20% Similarity=0.193 Sum_probs=152.0
Q ss_pred cHHHHHHHHhhhhccCCCCCCCCccc-CCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhh--cCC
Q 018231 59 SVSVMQAVGSVMTNKYSEGYPGARYY-GGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL--LKP 135 (359)
Q Consensus 59 ~~~v~~al~~~~~~~~~~g~~~~~~~-~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al--~~~ 135 (359)
.|+|++|+.+.+.. +..|.-+.+-- +.+.....|| +.++++.+-+. .++|+|.-.||-..+..| .-|
T Consensus 187 Hp~V~~A~~~tl~~-hG~GAGGTRNIsG~s~~hv~LE----~eLA~LHqK~a-----ALlFsSCfVANDstLftLak~lp 256 (570)
T KOG1360|consen 187 HPEVLDAMHDTLDR-HGAGAGGTRNISGHSKHHVRLE----AELADLHQKEA-----ALLFSSCFVANDSTLFTLAKKLP 256 (570)
T ss_pred ChHHHHHHHHHHHH-cCCCcCCccccCCCCchhhhHH----HHHHHHhcCcc-----eeeeeeeeeccchHHHHHHHHCC
Confidence 59999999999886 43333332222 2333344555 78888888665 488888777777666666 448
Q ss_pred CCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhh---CCcEEEEc--CCCCCChh
Q 018231 136 HDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF---RPKLIVAG--ASAYARLY 210 (359)
Q Consensus 136 Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~---~~k~v~l~--~~n~g~~~ 210 (359)
|-+|+.....|.+.+. +++-+++.- .+ +..+ |+++|++.++.. .||+|.+. .+..|.+.
T Consensus 257 gcei~SD~gNHASMI~--------GIrns~v~K-~I-FrHN------D~~hL~~lL~~~~~svPKivAFEtVhSM~Gavc 320 (570)
T KOG1360|consen 257 GCEIFSDEGNHASMIQ--------GIRNSRVPK-HI-FRHN------DLDHLEQLLQSSPKSVPKIVAFETVHSMDGAVC 320 (570)
T ss_pred CcEEeccccchHHHHH--------HhhhcCCcc-ee-eccC------CHHHHHHHHHhCCCCCCceEEEeeeeccCCCcC
Confidence 8888876655655432 333233221 12 1233 899999888642 47888886 66699999
Q ss_pred hHHHHHHHHHHcCCEEEEecccccccccc---CC-CCCCCC-CceEEEeCCCCcCCCCCceEEEEeCCcchhccCCcchh
Q 018231 211 DYERIRKVCNKQKAIMLADMAHISGLVAA---GV-IPSPFE-YADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVF 285 (359)
Q Consensus 211 ~l~~i~~la~~~~~~vivD~a~~~g~~~~---~~-~~~~~~-~~D~v~~s~~K~l~gp~gG~l~~~~~~~~~~~~g~~~~ 285 (359)
|+++|.+++++||++.++|++|++|.... ++ ...+.. .+|++++...|+| |.-||+|....
T Consensus 321 pleelcDvah~yGAiTFlDEVHAVGlYG~rGaGvgerdGvm~kvDiIsGTLgKaf-GcVGGYIAat~------------- 386 (570)
T KOG1360|consen 321 PLEELCDVAHKYGAITFLDEVHAVGLYGPRGAGVGERDGVMHKVDIISGTLGKAF-GCVGGYIAATR------------- 386 (570)
T ss_pred CHHHHHHHHHHhCceeeeehhhhhccccCCCCCccccCCcchhhhhcccchhhhc-ccccceehhhh-------------
Confidence 99999999999999999999999987642 11 111222 4899999999998 55689998877
Q ss_pred hhHHHhhccccCCCC-C-CCCcHHHHHHHHHHHHHHhccc
Q 018231 286 YDYEEKINQAVFPGL-Q-GGPHNHTITGLAVALKQVCTLI 323 (359)
Q Consensus 286 ~~~~~~~~~~~~~~~-~-gt~~~~~i~al~~Al~~~~~~~ 323 (359)
++.+.++.. .++. + .+.+...+++.-.|.+++..++
T Consensus 387 -~LvDmiRSy-AaGFIFTTSLPP~vl~GAleaVr~lk~~e 424 (570)
T KOG1360|consen 387 -KLVDMIRSY-AAGFIFTTSLPPMVLAGALEAVRILKSEE 424 (570)
T ss_pred -hHHHHHHHh-cCceEEecCCChHHHHhHHHHHHHHhhhh
Confidence 666666543 4554 3 5556666777778888888763
No 266
>PRK12566 glycine dehydrogenase; Provisional
Probab=99.53 E-value=9.1e-14 Score=142.23 Aligned_cols=159 Identities=17% Similarity=0.152 Sum_probs=113.3
Q ss_pred HHHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhh----cC----CCCeeeecCCCCCcccCccccccccceeeeeee
Q 018231 96 LCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL----LK----PHDRIMALDLPHGGHLSHGYQTDTKKISAVSIF 167 (359)
Q Consensus 96 ~~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al----~~----~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~ 167 (359)
.+++++++++|.+. +.+...+|+.+.++.++++ .. ..++|+++...|+++..+ +...|.+
T Consensus 547 elq~~l~eLtGmd~----~Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saHgtNpas--------a~~~Gie 614 (954)
T PRK12566 547 ELEAWLCAITGFDA----ICMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHGTNPAS--------AQMAGMR 614 (954)
T ss_pred HHHHHHHHHHCCCe----EeecCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEecccccccCHHH--------HHHCCCE
Confidence 36699999999987 3355556666665555554 22 246788888888777432 2345766
Q ss_pred eEEEecccCCCCCCCCHHHHHHHhhhh--CCcEEEEc-CCCCC-ChhhHHHHHHHHHHcCCEEEEeccccccccccCC-C
Q 018231 168 FETMPYRLNESTGYIDYDQLEKSATLF--RPKLIVAG-ASAYA-RLYDYERIRKVCNKQKAIMLADMAHISGLVAAGV-I 242 (359)
Q Consensus 168 ~~~v~~~~~~~~~~~d~e~l~~~i~~~--~~k~v~l~-~~n~g-~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~-~ 242 (359)
++.++ .+ +++.+|+++|++++++. ++++|+++ +++.| ...++++|+++|+++|+++++|++|..+...... .
T Consensus 615 Vv~Vp--~D-~~G~iDle~L~a~I~~~~~~laaVmiT~Pnt~Gv~e~~V~eI~~iah~~Galv~vDgA~~~a~~~l~~Pg 691 (954)
T PRK12566 615 VVIVE--CD-PDGNVDLDDLKAKAAAAGDRLSCLMITYPSTHGVYEEGIREICEVVHQHGGQVYMDGANLNAQVGLARPA 691 (954)
T ss_pred EEEec--cC-CCCCcCHHHHHHHhhccCCCEEEEEEEecCcCceecchHHHHHHHHHHcCCEEEEEeeChhhccCCCChh
Confidence 66665 55 56799999999999732 55666666 55555 4467999999999999999999999877766542 3
Q ss_pred CCCCCCceEEEeCCCCcCCCCCc-eEEEEeC
Q 018231 243 PSPFEYADVVTTTTHKSLRGPRG-AMIFFRK 272 (359)
Q Consensus 243 ~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~ 272 (359)
.. |+|++++++||||++|.| |..++..
T Consensus 692 ~~---GADi~~~s~HKtf~~P~G~GGP~vG~ 719 (954)
T PRK12566 692 DI---GADVSHMNLHKTFCIPHGGGGPGMGP 719 (954)
T ss_pred hc---CCCEEEecCCcccCcCccCCCCccch
Confidence 33 499999999999988777 5444443
No 267
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=99.53 E-value=5.9e-14 Score=133.53 Aligned_cols=158 Identities=22% Similarity=0.229 Sum_probs=111.4
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeee
Q 018231 88 EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIF 167 (359)
Q Consensus 88 ~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~ 167 (359)
+....+| +.++++.|.+. .+++.||..|+.+++.+++++||+|+++..-|++.... ........|.+
T Consensus 55 Pt~~~le----~~la~Le~g~~-----a~~~~SGmaAi~~~l~~ll~~Gd~iv~~~~~Y~~t~~~----~~~~l~~~gv~ 121 (386)
T PF01053_consen 55 PTVRALE----QRLAALEGGED-----ALLFSSGMAAISAALLALLKPGDHIVASDDLYGGTYRL----LEELLPRFGVE 121 (386)
T ss_dssp HHHHHHH----HHHHHHHT-SE-----EEEESSHHHHHHHHHHHHS-TTBEEEEESSSSHHHHHH----HHHCHHHTTSE
T ss_pred ccHHHHH----HHHHHhhcccc-----eeeccchHHHHHHHHHhhcccCCceEecCCccCcchhh----hhhhhcccCcE
Confidence 4455555 78888888854 47778888888779999999999999998666654322 12112223544
Q ss_pred eEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhhHHHHHHHHHHcC-CEEEEeccccccccccCCCCC
Q 018231 168 FETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQK-AIMLADMAHISGLVAAGVIPS 244 (359)
Q Consensus 168 ~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~l~~i~~la~~~~-~~vivD~a~~~g~~~~~~~~~ 244 (359)
+..+ +.. |++++++++++ +|++|++. |+| +..+.|+++|+++|+++| +++++|.+.+.+.. ..
T Consensus 122 v~~~--d~~------d~~~l~~~l~~-~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~atp~~-----~~ 187 (386)
T PF01053_consen 122 VTFV--DPT------DLEALEAALRP-NTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFATPYN-----QN 187 (386)
T ss_dssp EEEE--STT------SHHHHHHHHCT-TEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTHTTT-----C-
T ss_pred EEEe--Cch------hHHHHHhhccc-cceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccceee-----ec
Confidence 4333 222 89999999998 99999997 888 678899999999999998 99999998755422 12
Q ss_pred CCC-CceEEEeCCCCcCCCCCc---eEEEEeC
Q 018231 245 PFE-YADVVTTTTHKSLRGPRG---AMIFFRK 272 (359)
Q Consensus 245 ~~~-~~D~v~~s~~K~l~gp~g---G~l~~~~ 272 (359)
|+. |+|+++.|.+|+++|... |++++++
T Consensus 188 pL~~GaDivv~S~TKyl~Ghsdv~~G~vv~~~ 219 (386)
T PF01053_consen 188 PLELGADIVVHSATKYLSGHSDVMGGAVVVNG 219 (386)
T ss_dssp GGGGT-SEEEEETTTTTTTSSSE-EEEEEESS
T ss_pred cCcCCceEEEeeccccccCCcceeeEEEEECc
Confidence 343 599999999999987663 7888776
No 268
>PRK08637 hypothetical protein; Provisional
Probab=99.52 E-value=7e-13 Score=127.48 Aligned_cols=177 Identities=15% Similarity=0.083 Sum_probs=108.9
Q ss_pred CCchhHHHHHHHHHHHHHHHcC-CCCCCCceeEEECCChH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccce-
Q 018231 85 GGNEYIDMAESLCQKRALEAFR-LDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKI- 161 (359)
Q Consensus 85 ~~~~~~~~l~~~~~~~~a~~~g-~~~~~~~~~v~~tsG~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~- 161 (359)
+...+..++++++.+++.+..+ ..++.+ .+|++|+|++ ++..++.++++|||+|++++|.|+.+ ...+
T Consensus 41 ~~~~G~~~lr~~ia~~~~~~~~~~~~~~~-~~I~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~--------~~~~~ 111 (388)
T PRK08637 41 APPQGIPELRDLWQEKMLRENPSLSGKKM-SLPIVTNALTHGLSLVADLFVDQGDTVLLPDHNWGNY--------KLTFN 111 (388)
T ss_pred CCCCCCHHHHHHHHHHHhccCcccccccc-ceeeEccchHHHHHHHHHHhcCCCCEEEEcCCCCccH--------HHHHH
Confidence 3345567777666666655432 232210 2589999999 88878889999999999999555433 3222
Q ss_pred eeeeeeeEEEecccCCCCCCCCHHHHHHHhh---hhCCcEEEEc-CCC-CCChh---hHHHHHHHHHH-----cCCEEEE
Q 018231 162 SAVSIFFETMPYRLNESTGYIDYDQLEKSAT---LFRPKLIVAG-ASA-YARLY---DYERIRKVCNK-----QKAIMLA 228 (359)
Q Consensus 162 ~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~---~~~~k~v~l~-~~n-~g~~~---~l~~i~~la~~-----~~~~viv 228 (359)
...|++++.++ ...+++.+|++++++.++ +...++++++ |+| ||... .+++|+++|++ |++++|+
T Consensus 112 ~~~g~~vv~v~--~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~iI~ 189 (388)
T PRK08637 112 TRRGAEIVTYP--IFDEDGGFDTDALKEALQAAYNKGKVIVILNFPNNPTGYTPTEKEATAIVEAIKELADAGTKVVAVV 189 (388)
T ss_pred HhcCCEEEEec--ccCCCCcCCHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEe
Confidence 23566665555 421345689999999886 2134456666 888 99554 46677777765 8999999
Q ss_pred eccccccccccCCCCC---CC-C---Cce-EEEeCCCCcCC--CCCceEEEEeC
Q 018231 229 DMAHISGLVAAGVIPS---PF-E---YAD-VVTTTTHKSLR--GPRGAMIFFRK 272 (359)
Q Consensus 229 D~a~~~g~~~~~~~~~---~~-~---~~D-~v~~s~~K~l~--gp~gG~l~~~~ 272 (359)
|+++..-......... .+ . ..- +.+.|++|.+. |.+-|++++..
T Consensus 190 De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~pGlRlG~~~~~~ 243 (388)
T PRK08637 190 DDAYFGLFYEDSYKESLFAALANLHSNILAVKLDGATKEEFVWGFRVGFITFGT 243 (388)
T ss_pred cccchhcccCCccchhhHHHhhcccccceEEEeccccccCCCcccceEEEEEcc
Confidence 9997422211111000 00 0 121 23348899654 44449998753
No 269
>PRK06959 putative threonine-phosphate decarboxylase; Provisional
Probab=99.51 E-value=1.3e-13 Score=130.15 Aligned_cols=149 Identities=14% Similarity=0.084 Sum_probs=95.7
Q ss_pred HHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEeccc
Q 018231 97 CQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL 175 (359)
Q Consensus 97 ~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 175 (359)
+++++++++|++..+ +|++|+|++ ++. ++..++++|| |++++ |.|..+...+...|.++..+ +.
T Consensus 58 L~~~ia~~~~~~~~~---~I~i~~Gs~e~i~-~l~~~~~~g~-v~v~~--------P~y~~y~~~~~~~g~~~~~v--~~ 122 (339)
T PRK06959 58 LAACAARYYGAPDAA---HVLPVAGSQAAIR-ALPALLPRGR-VGIAP--------LAYSEYAPAFARHGHRVVPL--DE 122 (339)
T ss_pred HHHHHHHHhCCCCcc---cEEECcCHHHHHH-HHHHhcCCCe-EEEcC--------CCcHHHHHHHHHCCCEEEee--cc
Confidence 668999999996422 499999999 766 4445678887 77777 55555555566677665444 33
Q ss_pred CCCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhhHHHHHH---HHHHcCCEEEEeccccccccccCCCCCCCCCce
Q 018231 176 NESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRK---VCNKQKAIMLADMAHISGLVAAGVIPSPFEYAD 250 (359)
Q Consensus 176 ~~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~l~~i~~---la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D 250 (359)
+ + +. +.+ ++++++++ |+| ||...+.+++.+ .|++++.++|+|+++.-...........-..--
T Consensus 123 ~-~------~~----~~~-~~~~v~l~nPnNPTG~~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~~s~~~~~~~~~v 190 (339)
T PRK06959 123 A-A------DT----LPA-ALTHLIVVNPNNPTAERLPAARLLRWHAQLAARGGTLIVDEAFADTLPAASLAAHTDRPGL 190 (339)
T ss_pred c-c------hh----ccc-cCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEECCCccCCCcccchhccCCCCE
Confidence 3 1 22 222 46677777 888 997776665555 466789999999997532211111100000123
Q ss_pred EEEeCCCCcCC--CCCceEEEEeC
Q 018231 251 VVTTTTHKSLR--GPRGAMIFFRK 272 (359)
Q Consensus 251 ~v~~s~~K~l~--gp~gG~l~~~~ 272 (359)
+++.|++|.|+ |.+-|+++.++
T Consensus 191 i~l~SfSK~~gl~GlRiGy~v~~~ 214 (339)
T PRK06959 191 VVLRSVGKFFGLAGVRAGFVLAAP 214 (339)
T ss_pred EEEecChhhcCCcchheEEEecCH
Confidence 78899999774 33449999876
No 270
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=99.51 E-value=1.5e-12 Score=125.66 Aligned_cols=234 Identities=13% Similarity=0.105 Sum_probs=133.9
Q ss_pred CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHhhcCCC
Q 018231 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPH 136 (359)
Q Consensus 58 ~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~al~~~G 136 (359)
.+|.+.+++.+.+.. + +... ..|..... . .+.++++++++.+..+ .+++++|++ ++..++.....+|
T Consensus 60 ~~p~v~~ai~~~~~~-~--~~~~-~~~~~~~~-~----~la~~l~~~~~~~~~~---~v~~~~sgsea~~~al~~~~~~g 127 (398)
T PRK03244 60 AHPAVVEAVTRQLAT-L--GHVS-NLFATEPQ-I----ALAERLVELLGAPEGG---RVFFCNSGAEANEAAFKLARLTG 127 (398)
T ss_pred CCHHHHHHHHHHHHh-c--cCcc-CccCCHHH-H----HHHHHHHHhCCCCCCC---EEEEeCchHHHHHHHHHHHHHHC
Confidence 368999999988775 2 1111 11222121 2 2558888888854212 488888888 8888887665566
Q ss_pred -CeeeecCCCCCcccCcccccc-----ccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCC
Q 018231 137 -DRIMALDLPHGGHLSHGYQTD-----TKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YAR 208 (359)
Q Consensus 137 -d~Vl~~~~~~~~~~~~~~~~~-----~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~ 208 (359)
+.|+..+..|.+......... .......+..+..++ . .|++.+++.+.+ ++++|+++ +.| +|.
T Consensus 128 ~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~------~d~~~l~~~~~~-~~~aviiep~~~~~G~ 198 (398)
T PRK03244 128 RTKIVAAEGGFHGRTMGALALTGQPAKRAPFEPLPGGVEHVP--Y------GDVDALAAAVDD-DTAAVFLEPIQGEAGV 198 (398)
T ss_pred CCeEEEECCCcCCccHHHHhccCCcccccCCCCCCCCceEeC--C------CCHHHHHHhhcC-CeEEEEEecccCCCCC
Confidence 466666655554421100000 000000001111111 1 378999998865 78899888 444 776
Q ss_pred hhh----HHHHHHHHHHcCCEEEEeccccccccccC----CCCCCCCCceEEEeCCCCcCCCC-CceEEEEeCCcchhcc
Q 018231 209 LYD----YERIRKVCNKQKAIMLADMAHISGLVAAG----VIPSPFEYADVVTTTTHKSLRGP-RGAMIFFRKGVKEINK 279 (359)
Q Consensus 209 ~~~----l~~i~~la~~~~~~vivD~a~~~g~~~~~----~~~~~~~~~D~v~~s~~K~l~gp-~gG~l~~~~~~~~~~~ 279 (359)
+.| +++|.++|++||+++|+|++|+ |.-..+ ....+. ..|++++| |+|+++ +-|+++.++
T Consensus 199 ~~~~~~~l~~l~~l~~~~~~llI~DEv~~-g~gr~g~~~~~~~~~~-~pDi~t~s--K~l~~G~~ig~~~~~~------- 267 (398)
T PRK03244 199 VPPPAGYLAAAREITDRHGALLVLDEVQT-GIGRTGAWFAHQHDGV-TPDVVTLA--KGLGGGLPIGACLAFG------- 267 (398)
T ss_pred cCCCHHHHHHHHHHHHHcCCEEEEecccc-CCcccchHHhhhhhCC-CCCEEEEc--hhhhCCcccEEEEEcH-------
Confidence 665 8899999999999999999985 321111 011110 25888775 999643 238888877
Q ss_pred CCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhccccchhHhhh
Q 018231 280 QGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVF 331 (359)
Q Consensus 280 ~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~ 331 (359)
++.+.+........+ ..+....++..++|+.+.++....+.+..
T Consensus 268 -------~~~~~~~~~~~~~t~-~~~~~~~aaa~a~l~~~~~~~~~~~~~~~ 311 (398)
T PRK03244 268 -------PAADLLTPGLHGSTF-GGNPVACAAALAVLDTIASEGLLENAERL 311 (398)
T ss_pred -------HHHhhccCCCCcCCC-CCCHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 444444332122223 34456677777888877654333333333
No 271
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed
Probab=99.50 E-value=2.3e-12 Score=124.45 Aligned_cols=224 Identities=13% Similarity=0.074 Sum_probs=131.1
Q ss_pred cHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhhcC----
Q 018231 59 SVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLK---- 134 (359)
Q Consensus 59 ~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al~~---- 134 (359)
.|.+.+++.+.+.. +..+.. .+. .+...+ +.+.++++++.+. .+++.||+.|+..++..+..
T Consensus 59 ~~~i~~a~~~~~~~-~~~~~~---~~~-~~~~~~----l~~~l~~~~~~~~-----~~~~~SGs~A~e~al~~a~~~~~~ 124 (401)
T PRK00854 59 HPKILAAMVEQAGR-LTLTSR---AFR-NDQLAP----LYEELAALTGSHK-----VLPMNSGAEAVETAIKAVRKWGYE 124 (401)
T ss_pred CHHHHHHHHHHHhh-cccccc---ccC-CHHHHH----HHHHHHhhCCCCE-----EEEeCCcHHHHHHHHHHHHHHHHh
Confidence 78999999988875 311111 111 123333 4477888887642 36666666688877776632
Q ss_pred -----CC-CeeeecCCCCCcccCcccccc-----ccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc-
Q 018231 135 -----PH-DRIMALDLPHGGHLSHGYQTD-----TKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG- 202 (359)
Q Consensus 135 -----~G-d~Vl~~~~~~~~~~~~~~~~~-----~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~- 202 (359)
+| ++|++.+..+.+........- +.........+..+ + ..|++++++.+.+ ++++|+++
T Consensus 125 ~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~------~~d~~~le~~i~~-~~~aii~e~ 195 (401)
T PRK00854 125 VKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDARGGFGPFTPGFRVV--P------FGDAEALEAAITP-NTVAFLVEP 195 (401)
T ss_pred ccCCCCCCceEEEECCCcCCccHHHHhccCCccccccCCCCCCCeEEe--C------CCCHHHHHHHhCC-CeEEEEEcc
Confidence 23 688888766544321111000 00000000011112 1 1389999999987 89999998
Q ss_pred CCC-CCChhh----HHHHHHHHHHcCCEEEEecccc-ccccccCCCCCCCC-CceEEEeCCCCcCCCC--CceEEEEeCC
Q 018231 203 ASA-YARLYD----YERIRKVCNKQKAIMLADMAHI-SGLVAAGVIPSPFE-YADVVTTTTHKSLRGP--RGAMIFFRKG 273 (359)
Q Consensus 203 ~~n-~g~~~~----l~~i~~la~~~~~~vivD~a~~-~g~~~~~~~~~~~~-~~D~v~~s~~K~l~gp--~gG~l~~~~~ 273 (359)
+.| +|.+.| +++|.++|++||+++|+|++|+ +|...........+ ..|+++++ |+|++. +.|++++++
T Consensus 196 ~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g~~~~~~~~g~~~D~~~~~--K~l~gg~~~ig~v~~~~- 272 (401)
T PRK00854 196 IQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGKLLAEEHEGIEADVTLIG--KALSGGFYPVSAVLSNS- 272 (401)
T ss_pred ccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCchHhHHhhcCCCCCEEEec--ccccCCccCeEEEEEcH-
Confidence 555 776654 9999999999999999999997 33322111000011 26888875 999654 358888877
Q ss_pred cchhccCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhcc
Q 018231 274 VKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTL 322 (359)
Q Consensus 274 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~~ 322 (359)
++.+.+........++ .+....++..++|+.+.++
T Consensus 273 -------------~~~~~l~~~~~~~t~~-~~~~~~aa~~a~L~~l~~~ 307 (401)
T PRK00854 273 -------------EVLGVLKPGQHGSTFG-GNPLACAVARAALKVLTEE 307 (401)
T ss_pred -------------HHHhcccCCCCCCCCC-cCHHHHHHHHHHHHHHHHc
Confidence 4444433211111223 3556677777888877653
No 272
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=99.50 E-value=2.3e-13 Score=123.70 Aligned_cols=158 Identities=17% Similarity=0.164 Sum_probs=117.6
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeee
Q 018231 88 EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIF 167 (359)
Q Consensus 88 ~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~ 167 (359)
+..+.+| ++++.+-|--. .+.+.||..|...++..++.+||+|+..+.-|++.+...... ....|.+
T Consensus 62 PT~~vlE----~RiAaLEGG~a-----a~a~aSG~AA~~~ai~~la~aGD~iVss~~LYGGT~~lf~~t----l~~~Gi~ 128 (426)
T COG2873 62 PTTDVLE----ERIAALEGGVA-----ALAVASGQAAITYAILNLAGAGDNIVSSSKLYGGTYNLFSHT----LKRLGIE 128 (426)
T ss_pred chHHHHH----HHHHHhhcchh-----hhhhccchHHHHHHHHHhccCCCeeEeeccccCchHHHHHHH----HHhcCcE
Confidence 3456555 77887777543 388888988888899999999999999988888775533222 2234655
Q ss_pred eEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCC
Q 018231 168 FETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP 245 (359)
Q Consensus 168 ~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~ 245 (359)
++.+ +.+ |++.++++|++ +||+|++. -.| -+.+.|++.|+++||+||+++|+|..-+.+.. ..|
T Consensus 129 v~fv--d~~------d~~~~~~aI~~-nTkavf~EtigNP~~~v~Die~ia~iAh~~gvpliVDNT~atpyl-----~rP 194 (426)
T COG2873 129 VRFV--DPD------DPENFEAAIDE-NTKAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTFATPYL-----CRP 194 (426)
T ss_pred EEEe--CCC------CHHHHHHHhCc-ccceEEEEeccCCCccccCHHHHHHHHHHcCCcEEEecCCCccee-----cch
Confidence 5544 222 79999999999 99999996 666 45888999999999999999999998554422 234
Q ss_pred CC-CceEEEeCCCCcCCCCCc--eEEEEeC
Q 018231 246 FE-YADVVTTTTHKSLRGPRG--AMIFFRK 272 (359)
Q Consensus 246 ~~-~~D~v~~s~~K~l~gp~g--G~l~~~~ 272 (359)
++ |+|+|+.|.+||++|... |.+++..
T Consensus 195 ~~hGADIVvHS~TK~igGhGt~iGG~iVD~ 224 (426)
T COG2873 195 IEHGADIVVHSATKYIGGHGTAIGGVIVDG 224 (426)
T ss_pred hhcCCCEEEEeecccccCCccccceEEEeC
Confidence 44 599999999999976443 5555544
No 273
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=99.50 E-value=2.4e-13 Score=126.80 Aligned_cols=152 Identities=16% Similarity=0.138 Sum_probs=115.5
Q ss_pred HHHHHHcCCCCCCCceeEEECCChHHHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCC
Q 018231 99 KRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNES 178 (359)
Q Consensus 99 ~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~ 178 (359)
..++.+.|+.. .+++.||.+|...++..++++||+|+..+..|++........ ....|.+...+ +.+
T Consensus 84 ~~iaal~ga~~-----~l~fsSGmaA~~~al~~L~~~g~~iV~~~~~Y~gT~~~l~~~----~~~~gie~~~v--d~~-- 150 (409)
T KOG0053|consen 84 SGIAALEGAAH-----ALLFSSGMAAITVALLHLLPAGDHIVATGDVYGGTLRILRKF----LPKFGGEGDFV--DVD-- 150 (409)
T ss_pred HHHHHHhCCce-----EEEecccHHHHHHHHHHhcCCCCcEEEeCCCcccHHHHHHHH----HHHhCceeeee--chh--
Confidence 78888989875 488889988777799999999999999998888765432211 11234333333 233
Q ss_pred CCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEeCC
Q 018231 179 TGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTT 256 (359)
Q Consensus 179 ~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~ 256 (359)
|++++++.+++ ++++|++. |+| +..+.|+++|+++|+++|+++++|.+.+.+ ...+..+. |||+++.|.
T Consensus 151 ----~~~~~~~~i~~-~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnTf~~p-~~~~pL~l---GADIV~hSa 221 (409)
T KOG0053|consen 151 ----DLKKILKAIKE-NTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNTFGSP-YNQDPLPL---GADIVVHSA 221 (409)
T ss_pred ----hHHHHHHhhcc-CceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCCcCcc-cccChhhc---CCCEEEEee
Confidence 78889999988 99999997 888 788999999999999999999999985433 12222222 499999999
Q ss_pred CCcCCCCCc---eEEEEeC
Q 018231 257 HKSLRGPRG---AMIFFRK 272 (359)
Q Consensus 257 ~K~l~gp~g---G~l~~~~ 272 (359)
+|+|+|... |.++.+.
T Consensus 222 TKyi~Ghsdvi~G~iv~n~ 240 (409)
T KOG0053|consen 222 TKYIGGHSDVIGGSVVLNS 240 (409)
T ss_pred eeeecCCcceeeeEEecCc
Confidence 999988665 7777764
No 274
>TIGR00707 argD acetylornithine and succinylornithine aminotransferases. Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)
Probab=99.49 E-value=1.9e-12 Score=123.92 Aligned_cols=232 Identities=13% Similarity=0.100 Sum_probs=134.6
Q ss_pred cCceeeCC--CC---CCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCC
Q 018231 47 KGLELIPS--EN---FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSG 121 (359)
Q Consensus 47 ~~i~l~~~--~~---~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG 121 (359)
..|++.++ .+ ..+|.+.+++.+.+.... ... +.|.. +... .+.+++++++|.+. +++++|
T Consensus 28 ~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~~---~~~-~~~~~-~~~~----~l~~~la~~~g~~~------~~~~~s 92 (379)
T TIGR00707 28 EYLDFVAGIAVNSLGHAHPKLVEALKEQLEKLV---HVS-NLYYT-EPQE----ELAEKLVEHSGADR------VFFCNS 92 (379)
T ss_pred EEEEcCcchhhccCCCCCHHHHHHHHHHHhhcc---ccc-cccCC-HHHH----HHHHHHHhhCCCCE------EEEeCC
Confidence 35677653 22 346899999998877521 111 11221 2223 35688999998762 777776
Q ss_pred hH-HHHHHHHhh---cC----CCCeeeecCCCCCcccCccccccccceeeeeeeeEE--EecccCCC-CCC--CCHHHHH
Q 018231 122 SP-SNFQVYTAL---LK----PHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFET--MPYRLNES-TGY--IDYDQLE 188 (359)
Q Consensus 122 ~~-a~~~~~~al---~~----~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--v~~~~~~~-~~~--~d~e~l~ 188 (359)
++ ++..++.++ .. +||+|+++++.|.+...-.. ..+..... ...+...+ ... .|+++++
T Consensus 93 g~~a~~~a~~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~ 164 (379)
T TIGR00707 93 GAEANEAALKLARKYTGDKGKEKKKIIAFENSFHGRTMGAL--------SATGQPKYQKGFEPLVPGFSYAPYNDIESLK 164 (379)
T ss_pred cHHHHHHHHHHHHHHhhccCCCCCeEEEECCCcCCccHHHH--------HhcCChhhhccCCCCCCCceeeCCCCHHHHH
Confidence 66 887666644 22 47999999866654321110 01100000 00011101 111 1899999
Q ss_pred HHhhhhCCcEEEEcCCC--CCC----hhhHHHHHHHHHHcCCEEEEeccccccccccCC----CCCCCCCceEEEeCCCC
Q 018231 189 KSATLFRPKLIVAGASA--YAR----LYDYERIRKVCNKQKAIMLADMAHISGLVAAGV----IPSPFEYADVVTTTTHK 258 (359)
Q Consensus 189 ~~i~~~~~k~v~l~~~n--~g~----~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~----~~~~~~~~D~v~~s~~K 258 (359)
+.+++ ++++|+++++| +|. ..++++|.++|+++|+++|+|++|+ +....+. ...+ ...|++++ +|
T Consensus 165 ~~~~~-~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~-~~~~~g~~~~~~~~~-~~~d~~t~--sK 239 (379)
T TIGR00707 165 KAIDD-ETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQT-GIGRTGKFFAYEHYG-IEPDIITL--AK 239 (379)
T ss_pred HHhhh-CeeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCccchhhhHHhcC-CCCCEEEE--cc
Confidence 99987 89999988545 342 2348899999999999999999985 2211110 0111 02466655 59
Q ss_pred cCCCC-CceEEEEeCCcchhccCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhc
Q 018231 259 SLRGP-RGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCT 321 (359)
Q Consensus 259 ~l~gp-~gG~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~ 321 (359)
+++++ +.|+++.++ ++.+.+........+ +.+.+..+++.++|+.+..
T Consensus 240 ~~~~G~riG~~~~~~--------------~~~~~~~~~~~~~~~-~~~~~~~~aa~aaL~~~~~ 288 (379)
T TIGR00707 240 GLGGGVPIGATLAKE--------------EVAEAFTPGDHGSTF-GGNPLACAAALAVLEVIEK 288 (379)
T ss_pred cccCCcccEEEEEcH--------------HHHhhhcCCCCCCCC-CCCHHHHHHHHHHHHHHHh
Confidence 98632 338888876 555554432111122 3466777888888887764
No 275
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=99.49 E-value=2.2e-12 Score=124.14 Aligned_cols=222 Identities=11% Similarity=0.060 Sum_probs=128.9
Q ss_pred CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHhh----
Q 018231 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTAL---- 132 (359)
Q Consensus 58 ~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~al---- 132 (359)
-.|.+.+++.+.+......+ . .+. .+...+ +.++++++.+.+ .+++++|++ ++..++++.
T Consensus 48 ~~p~v~~a~~~~~~~~~~~~---~-~~~-~~~~~~----la~~l~~~~~~~------~v~~~~sGseA~~~al~~ar~~~ 112 (389)
T PRK01278 48 AHPHLVEALKEQAEKLWHVS---N-LYR-IPEQER----LAERLVENSFAD------KVFFTNSGAEAVECAIKTARRYH 112 (389)
T ss_pred CCHHHHHHHHHHHHhcCccc---c-ccC-ChHHHH----HHHHHHhhCCCC------EEEEcCCcHHHHHHHHHHHHHHH
Confidence 47899999998876522111 1 111 122222 446777766433 377776666 888777665
Q ss_pred cCCCC----eeeecCCCCCcccCccccccccceeeeeeeeEEEec-ccCCCCC----CCCHHHHHHHhhhhCCcEEEEcC
Q 018231 133 LKPHD----RIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPY-RLNESTG----YIDYDQLEKSATLFRPKLIVAGA 203 (359)
Q Consensus 133 ~~~Gd----~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~~~----~~d~e~l~~~i~~~~~k~v~l~~ 203 (359)
..+|| +|++.+..|++........ .+.....-.+ +.. +++ ..|++++++.+++ ++++|++.|
T Consensus 113 ~~~G~~~r~~vi~~~~~yhg~~~~~~~~-------~~~~~~~~~~~~~~-~~~~~~~~~d~~~l~~~l~~-~~~avivep 183 (389)
T PRK01278 113 YGKGHPERYRIITFEGAFHGRTLATIAA-------GGQEKYLEGFGPLV-PGFDQVPFGDIEALKAAITP-NTAAILIEP 183 (389)
T ss_pred HhcCCCCCCEEEEECCCcCCCcHHHHhc-------cCChhhcccCCCCC-CCceEeCCCCHHHHHHhhCC-CeEEEEEec
Confidence 46777 8999887666553222111 1100000000 001 111 2589999999987 899999985
Q ss_pred CC--CC----ChhhHHHHHHHHHHcCCEEEEeccccccccccCC----CCCCCCCceEEEeCCCCcCC-CCCceEEEEeC
Q 018231 204 SA--YA----RLYDYERIRKVCNKQKAIMLADMAHISGLVAAGV----IPSPFEYADVVTTTTHKSLR-GPRGAMIFFRK 272 (359)
Q Consensus 204 ~n--~g----~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~----~~~~~~~~D~v~~s~~K~l~-gp~gG~l~~~~ 272 (359)
.+ +| ....+++|.++|++||+++|+|++|+ |....+. ..... ..|++++ +|.++ |.+.|++++++
T Consensus 184 ~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~g~~g~~~~~~~~~~-~pdi~t~--sK~l~~G~~ig~~~~~~ 259 (389)
T PRK01278 184 IQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQC-GMGRTGKLFAHEWAGV-TPDIMAV--AKGIGGGFPLGACLATE 259 (389)
T ss_pred ccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcCCcceeecccCC-CCCEEEE--ehhccCCcceEEEEEcH
Confidence 44 44 23468999999999999999999986 3211110 01110 2577655 59885 33448888877
Q ss_pred CcchhccCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhcc
Q 018231 273 GVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTL 322 (359)
Q Consensus 273 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~~ 322 (359)
++.+.+........+ +.+....+|..++|+.+.++
T Consensus 260 --------------~~~~~~~~~~~~~t~-~~~~~~~aaa~a~l~~l~~~ 294 (389)
T PRK01278 260 --------------EAAKGMTPGTHGSTY-GGNPLAMAVGNAVLDVILAP 294 (389)
T ss_pred --------------HHHhccCCCCCCCCC-CccHHHHHHHHHHHHHHhhh
Confidence 444444322111222 34566677777889887654
No 276
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=99.48 E-value=6.1e-13 Score=125.22 Aligned_cols=153 Identities=14% Similarity=0.114 Sum_probs=104.3
Q ss_pred HHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEeccc
Q 018231 97 CQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL 175 (359)
Q Consensus 97 ~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 175 (359)
+++.+++++|.+++ +|++|+|++ ++..++. +++||+ |++++ |.|..+...+...|+++..+| +
T Consensus 45 lr~~ia~~~~~~~~----~I~it~Gs~~~l~~~~~-~~~~~~-vv~~~--------P~y~~y~~~~~~~G~~v~~vp--~ 108 (332)
T PRK06425 45 IEDQIKIYTQGLKI----KVLIGPGLTHFIYRLLS-YINVGN-IIIVE--------PNFNEYKGYAFTHGIRISALP--F 108 (332)
T ss_pred HHHHHHHHhCCCcc----eEEECCCHHHHHHHHHH-HhCCCc-EEEeC--------CChHHHHHHHHHcCCeEEEEe--C
Confidence 55889999999875 499999999 7775665 577875 66667 555555556777787776665 4
Q ss_pred CCCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhh---HHHHHHHHHHcCCEEEEeccccccccccCCCC-CCC-C-
Q 018231 176 NESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIP-SPF-E- 247 (359)
Q Consensus 176 ~~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~---l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~-~~~-~- 247 (359)
+ + ..+|.+.+++ .++|+++++ |+| ||...+ +++|.++|+++++++|+|++...-. ...... ..+ .
T Consensus 109 ~-~-~~~~~~~l~~----~~~k~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~-~~~~~~~~~~~~~ 181 (332)
T PRK06425 109 N-L-INNNPEILNN----YNFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDFV-PNRAEEDVLLNRS 181 (332)
T ss_pred C-c-ccCcHHHHhh----cCCCEEEEeCCCCCcCCccCHHHHHHHHHHHHHcCCEEEEecchhccc-cccchhHHHHhcc
Confidence 3 1 3446555542 378999988 888 996655 6677788899999999999964221 111000 000 0
Q ss_pred -CceEEEeCCCCcCC--CCCceEEEEeC
Q 018231 248 -YADVVTTTTHKSLR--GPRGAMIFFRK 272 (359)
Q Consensus 248 -~~D~v~~s~~K~l~--gp~gG~l~~~~ 272 (359)
.--+++.|++|.++ |.+-|+++.++
T Consensus 182 ~~~vi~~~SfSK~~~l~GlRiGy~v~~~ 209 (332)
T PRK06425 182 YGNVIIGRSLTKILGIPSLRIGYIATDD 209 (332)
T ss_pred CCCEEEEeecHHhcCCchhhheeeecCH
Confidence 13478899999774 33339999977
No 277
>KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism]
Probab=99.48 E-value=3.5e-13 Score=118.94 Aligned_cols=201 Identities=18% Similarity=0.253 Sum_probs=133.3
Q ss_pred CceeeCCCC-CCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChHHHH
Q 018231 48 GLELIPSEN-FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNF 126 (359)
Q Consensus 48 ~i~l~~~~~-~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~ 126 (359)
.++|-+... .+..+.+++|.++.... .-|+.......|| +..++++|-+. .++++||+.+|+
T Consensus 23 ~vDLRSDTvT~PTdeMr~am~eA~vgD--------dVyGeD~tt~rLE----~~vA~l~GKEA-----gLFv~SGTmgNl 85 (384)
T KOG1368|consen 23 SVDLRSDTVTVPTDEMRRAMAEASVGD--------DVYGEDPTTNRLE----QRVAELFGKEA-----GLFVPSGTMGNL 85 (384)
T ss_pred ccccccccccCChHHHHHHHhhcccCc--------ccccCCccHHHHH----HHHHHHhCccc-----eeeecccccccH
Confidence 355543333 35678888888765542 2234334455666 78899999775 488999999887
Q ss_pred HHHHhhc-CCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhC-------CcE
Q 018231 127 QVYTALL-KPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFR-------PKL 198 (359)
Q Consensus 127 ~~~~al~-~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~-------~k~ 198 (359)
.+++.-+ .||.+|++-+..|--.+..+ ....+.|+.++.+ ... +++.+|++++|+++...+ |++
T Consensus 86 laIm~Hc~~rg~eii~gd~~HI~~~E~g-----g~s~l~gv~~~tv--~~e-~dgtm~ledIe~~ir~~~GD~H~p~T~L 157 (384)
T KOG1368|consen 86 LAIMVHCHQRGSEIIVGDRAHIHRYEQG-----GISQLAGVHVRTV--KNE-NDGTMDLEDIEAAIRVPKGDCHMPPTKL 157 (384)
T ss_pred HHHHHHhcCCCceEEeccchheeehhcc-----ChhhhccceeEee--eeC-CCCeeeHHHHHHhhcCCCCCccCCCceE
Confidence 7776665 59999998774443222111 1234556444433 333 678999999999997423 788
Q ss_pred EEEc-CCC-CC-ChhhH---HHHHHHHHHcCCEEEEecccccccc-ccCCCCCCC-CCceEEEeCCCCcCCCCCceEEEE
Q 018231 199 IVAG-ASA-YA-RLYDY---ERIRKVCNKQKAIMLADMAHISGLV-AAGVIPSPF-EYADVVTTTTHKSLRGPRGAMIFF 270 (359)
Q Consensus 199 v~l~-~~n-~g-~~~~l---~~i~~la~~~~~~vivD~a~~~g~~-~~~~~~~~~-~~~D~v~~s~~K~l~gp~gG~l~~ 270 (359)
|.+. .+| +| ...|+ +++.++|++||+.++.|+|..+... ..++.-..+ ..+|.+..+.+|.+++|-|.+++.
T Consensus 158 IclENT~~~~Gg~vlPle~~~~v~~lak~~glkLH~DGARi~NAavasgV~vk~i~~~fDSVsiCLSKglgAPVGSViVG 237 (384)
T KOG1368|consen 158 ICLENTHNNCGGKVLPLEELDRVKALAKRHGLKLHMDGARIFNAAVASGVPVKKICSAFDSVSICLSKGLGAPVGSVIVG 237 (384)
T ss_pred EEeeccccccCceEeeHHHHHHHHHHHhccCCeeecchhhhhhHHHHcCCCHHHHHHhhhhhhhhhhccCCCCcccEEEc
Confidence 8885 444 56 55555 5677889999999999998754322 112111011 137999999999999999999999
Q ss_pred eCC
Q 018231 271 RKG 273 (359)
Q Consensus 271 ~~~ 273 (359)
+++
T Consensus 238 ~k~ 240 (384)
T KOG1368|consen 238 SKD 240 (384)
T ss_pred cHH
Confidence 884
No 278
>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]
Probab=99.46 E-value=3.5e-13 Score=130.43 Aligned_cols=201 Identities=22% Similarity=0.228 Sum_probs=143.3
Q ss_pred HHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEeccc
Q 018231 97 CQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL 175 (359)
Q Consensus 97 ~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 175 (359)
+++..++.||++. ..++++|++ +|..++.+++.+||.||+....|.|+.. ++-++|+..+.+.-..
T Consensus 75 Aqe~aA~~fgAd~-----tyFvvNGTS~ank~vi~a~~~~GD~VLvdRN~HKSi~~--------glilaGa~Pvyl~p~~ 141 (557)
T COG1982 75 AQELAARVFGADH-----TYFVVNGTSTANKAVINAVLTPGDKVLVDRNCHKSIHH--------GLILAGATPVYLEPSR 141 (557)
T ss_pred HHHHHHHHhCCCc-----eEEEECCccHHHHHHHHhhcCCCCEEEecCCccHHHHH--------HHHHcCCceEEecCCC
Confidence 5689999999987 478889999 9999999999999999999988887753 3445676554443333
Q ss_pred CCC---CCCCCHHHHHHHhhhhC-C-cEEEEc-CCCCCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCC-CC-C
Q 018231 176 NES---TGYIDYDQLEKSATLFR-P-KLIVAG-ASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPS-PF-E 247 (359)
Q Consensus 176 ~~~---~~~~d~e~l~~~i~~~~-~-k~v~l~-~~n~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~-~~-~ 247 (359)
++. -+.++.+.+++.+.+++ . |+++++ ++-+|...++++|.+.+++.++++.+|++|.+-....+.... .. .
T Consensus 142 np~~gi~ggI~~~~~~~~l~~~~~~~k~~vitnpTYdGv~~n~~~i~~~~~~~~a~v~~deah~~~~~~~~~l~~~~~~~ 221 (557)
T COG1982 142 NPLYGIIGGIPLETFKEALLAHPDAEKLAVITNPTYDGVCYNLRKIVELLHHYGAWVLYDEAHPAHFDFSPMLPESALNG 221 (557)
T ss_pred CccccccCCCCHHHHHHHHHhChhhheeEEEecCccceEeecHHHHHHHHhhcCceEEhhhcCcccccccccCcchhhhc
Confidence 321 14789999998876532 3 667777 555899999999999999999999999998654433332221 11 2
Q ss_pred CceEEEeCCCCcCCCCCc-eEEEEeCCcchhccCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhc
Q 018231 248 YADVVTTTTHKSLRGPRG-AMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCT 321 (359)
Q Consensus 248 ~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~ 321 (359)
++|+++.|.||.+++..- .+|.+++.- . -..++++.+..-...++|+++.++++++|-.+...
T Consensus 222 ~~~~~tqS~HK~l~alSQaS~iHv~~~~--------~---~~~~r~nea~~~h~STSPsY~l~ASlD~Ar~~~~~ 285 (557)
T COG1982 222 GADFVTQSTHKLLAALSQASMIHVKDGR--------A---VNHERFNEALMMHQSTSPSYPLMASLDVARMQEGN 285 (557)
T ss_pred CceEEEechhhhhhhhhhhHHHhhCCCc--------c---CCHHHHHHHHHHHccCCchHHHHHHHHHHHHhhhh
Confidence 699999999999877555 777787620 0 11233333322223479999999999996555444
No 279
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=99.46 E-value=2.4e-12 Score=134.08 Aligned_cols=154 Identities=10% Similarity=0.048 Sum_probs=112.1
Q ss_pred HHHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHhh-cCCC--CeeeecCCCCCcccCccccccccceeeeeeeeEEE
Q 018231 96 LCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTAL-LKPH--DRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETM 171 (359)
Q Consensus 96 ~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~al-~~~G--d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v 171 (359)
..+..+++++|++++ ++.++.+++ +..+++.++ +++| |+|++++.+|+++..++.. .++..|.+++.+
T Consensus 152 ~~Qt~ia~LtG~~~a----naSL~d~aTAaaea~~~a~~~~~g~~~~VlVs~~~hP~~~~v~~t----~a~~~GieV~~v 223 (993)
T PLN02414 152 NYQTMITDLTGLPMS----NASLLDEGTAAAEAMAMCNNILKGKKKKFLIASNCHPQTIDVCQT----RADGLGLEVVVA 223 (993)
T ss_pred HHHHHHHHHhCCChh----hEeecCChHHHHHHHHHHHhcccCCCCEEEEcCccCHhHHHHHHH----hhhhcCCEEEEe
Confidence 378999999999985 499999988 555566666 5655 7899999999887655432 223346666556
Q ss_pred ecccCCCCCCCCHHHHHHHhhhhCCcEEEEc-CCCCCChhhHHHHHHHHHHcCCEEEEeccccccccccC-CCCCCCCCc
Q 018231 172 PYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAG-VIPSPFEYA 249 (359)
Q Consensus 172 ~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~-~~~~~~~~~ 249 (359)
++ + + .| ...+ .+..+++. |+++|.+.|+++|+++||++|+++++ +++..+..... .... |+
T Consensus 224 ~~--~-~---~~------~~~~-~v~~vlvq~P~~~G~v~dv~~I~~~ah~~GaL~iV-aad~lal~~l~~pge~---GA 286 (993)
T PLN02414 224 DE--K-D---FD------YSSG-DVCGVLVQYPATDGEVLDYAEFVKNAHANGVKVVM-ATDLLALTMLKPPGEW---GA 286 (993)
T ss_pred cc--h-h---hc------cccC-ceEEEEEecCCCCeEEcCHHHHHHHHHHcCCEEEE-EECHHHhcCCCCHhhc---cC
Confidence 42 2 1 01 1122 34455565 66699999999999999999999999 88888777663 3334 49
Q ss_pred eEEEeCCCCcC-----CCCCceEEEEeCCc
Q 018231 250 DVVTTTTHKSL-----RGPRGAMIFFRKGV 274 (359)
Q Consensus 250 D~v~~s~~K~l-----~gp~gG~l~~~~~~ 274 (359)
|++++++|||+ +||..|++++++++
T Consensus 287 Di~vgsgqKwg~P~G~GGP~aGflavr~~~ 316 (993)
T PLN02414 287 DIVVGSAQRFGVPMGYGGPHAAFLATSQEY 316 (993)
T ss_pred cEEEECCCccccCCCCCCCCeeEEEECHHH
Confidence 99999999997 56666999999975
No 280
>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type. This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.
Probab=99.45 E-value=1.1e-11 Score=123.66 Aligned_cols=171 Identities=16% Similarity=0.096 Sum_probs=113.5
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHhh--cC-------CCC--------------------
Q 018231 88 EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTAL--LK-------PHD-------------------- 137 (359)
Q Consensus 88 ~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~al--~~-------~Gd-------------------- 137 (359)
.....+|+.+.+++++++|.+. .| -.+|||+| +|+.++.+. .+ .++
T Consensus 119 P~~t~lE~~vi~~la~l~G~~~-~~---G~~TsGGT~ANl~aL~~AR~~k~~p~a~~~~~~~~~~~~~~w~l~n~~~~~~ 194 (608)
T TIGR03811 119 PATSQMEEEVGKEFATLMGYKN-GW---GHIVADGSLANLEGLWYARNIKSLPFAMKEVKPELVAGKSDWELLNMPTKEI 194 (608)
T ss_pred chHHHHHHHHHHHHHHHhCCCC-CC---eEEeCChHHHHHHHHHHHHHhhhccchhhhccccccccccchhhcccccccc
Confidence 4567888889999999999975 34 44677877 887644332 11 000
Q ss_pred -----------------------------eeeecCCCCCcccCccccccccceeeeeee---eEEEecccCCCCCCCCHH
Q 018231 138 -----------------------------RIMALDLPHGGHLSHGYQTDTKKISAVSIF---FETMPYRLNESTGYIDYD 185 (359)
Q Consensus 138 -----------------------------~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~---~~~v~~~~~~~~~~~d~e 185 (359)
+++++...|.++. +.+.+.|.. ++.|| ++ +++.+|++
T Consensus 195 ~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHyS~~--------KAa~ilGlG~~~vv~Vp--vD-~~~rmd~~ 263 (608)
T TIGR03811 195 MDLLESAGDQIDEIKAHSARSGKDLQKLGKWLVPQTKHYSWL--------KAADIIGIGLDQVIPVP--VD-SNYRMDIN 263 (608)
T ss_pred cccccccccchhhhhhhccccccccccceEEEECCCccHHHH--------HHHHHcCCCcccEEEee--cC-CCCcCCHH
Confidence 2444443343332 144556653 54554 56 67899999
Q ss_pred HHHHHhhhh---C--CcEEEEc--CCCCCChhhHHHHHHHH---HHcCC--EEEEeccccccc--cccC-----------
Q 018231 186 QLEKSATLF---R--PKLIVAG--ASAYARLYDYERIRKVC---NKQKA--IMLADMAHISGL--VAAG----------- 240 (359)
Q Consensus 186 ~l~~~i~~~---~--~k~v~l~--~~n~g~~~~l~~i~~la---~~~~~--~vivD~a~~~g~--~~~~----------- 240 (359)
+|++.+.+. + +-+|+.+ .+++|.+.|+++|+++| +++|+ ++++|+|++... +..+
T Consensus 264 ~L~~~I~~~~~~g~p~~~VVataGTT~~GaiDpl~eI~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~~~~p~~~~ 343 (608)
T TIGR03811 264 ELEKIIRKLAAEKTPILGVVGVVGSTEEGAVDGIDKIVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDNFIPYDDL 343 (608)
T ss_pred HHHHHHHHHHhcCCCeEEEEEEcCCcCCcccCCHHHHHHHHHHHHHcCCceeEeeeccccchhhhhhccccccccccchh
Confidence 999988641 2 2234434 44489999999999998 67888 699999975422 1111
Q ss_pred ---------C-------------CCCCCCCceEEEeCCCCcCCCCCc-eEEEEeCC
Q 018231 241 ---------V-------------IPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKG 273 (359)
Q Consensus 241 ---------~-------------~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~ 273 (359)
+ .-.++..+|.++.++||++..|.+ |++++++.
T Consensus 344 ~~~~~~~~~f~~~~~~l~~~~~~~l~gle~ADSItvDpHK~g~~Py~~G~ll~Rd~ 399 (608)
T TIGR03811 344 QEVHAEYGVFTEKKEYISREVYNAYKAISEAESVTIDPHKMGYIPYSAGGIVIQDI 399 (608)
T ss_pred hcccccccccccccccccHhHHHHHhcCcCceEEEeCcccccccCCCeEEEEEeCH
Confidence 0 001234699999999999999999 99999986
No 281
>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional
Probab=99.44 E-value=1.4e-11 Score=118.78 Aligned_cols=220 Identities=13% Similarity=0.095 Sum_probs=125.9
Q ss_pred CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhhc----
Q 018231 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALL---- 133 (359)
Q Consensus 58 ~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al~---- 133 (359)
-.|.|.+++.+.+.. +... . +... .+...+ +.++++++.+.+. .+++.||+.|+..++....
T Consensus 57 ~~p~v~~ai~~~~~~-~~~~--~-~~~~-~~~~~~----l~~~l~~~~~~~~-----~~~~~SGseA~e~Alk~a~~~~~ 122 (396)
T PRK04073 57 RHPKIIQALKDQADK-VTLT--S-RAFH-SDQLGP----WYEKVAKLTGKDM-----VLPMNTGAEAVETAIKAARRWAY 122 (396)
T ss_pred CCHHHHHHHHHHHhh-cccc--c-cccC-CHHHHH----HHHHHHhcCCCCe-----EEEcCChHHHHHHHHHHHHHHhh
Confidence 469999999988765 2111 1 1111 122222 4477777776532 3555566668887766542
Q ss_pred -----CCC-CeeeecCCCCCccc-Ccccc----cccc--ceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEE
Q 018231 134 -----KPH-DRIMALDLPHGGHL-SHGYQ----TDTK--KISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIV 200 (359)
Q Consensus 134 -----~~G-d~Vl~~~~~~~~~~-~~~~~----~~~~--~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~ 200 (359)
++| ++|+..+..|.+.. ..... .+.. .....+ +..++ . .|++++++.+++ ++++|+
T Consensus 123 ~~~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~------~d~~~l~~~i~~-~~~~vi 191 (396)
T PRK04073 123 DVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEEEYKRGFGPMLPG--IKKIP--Y------GDLEALKAAITP-NTAAFL 191 (396)
T ss_pred hccCCCCCCCEEEEECCCcCCCCHHHHhhcCCcccccCCCCCCCC--ceEeC--C------CCHHHHHHhccc-CeEEEE
Confidence 134 67887765554432 11000 0000 000011 11121 1 278999998876 888888
Q ss_pred Ec-CCC-CCChhh----HHHHHHHHHHcCCEEEEecccc-cccc----ccCCCCCCCCCceEEEeCCCCcCCCC--CceE
Q 018231 201 AG-ASA-YARLYD----YERIRKVCNKQKAIMLADMAHI-SGLV----AAGVIPSPFEYADVVTTTTHKSLRGP--RGAM 267 (359)
Q Consensus 201 l~-~~n-~g~~~~----l~~i~~la~~~~~~vivD~a~~-~g~~----~~~~~~~~~~~~D~v~~s~~K~l~gp--~gG~ 267 (359)
++ ++| +|.+.+ +++|.++|++||+++|+|++|+ +|.. ..+.... ..|++++| |.++++ +.|+
T Consensus 192 iep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~---~pdi~~~s--K~lg~gg~~ig~ 266 (396)
T PRK04073 192 VEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKLFACDWDNV---TPDMYILG--KALGGGVFPISC 266 (396)
T ss_pred EcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCcHHHHhhhcCC---CCCEEEec--ccccCCCCcceE
Confidence 88 445 775543 8999999999999999999987 2221 1111111 26888875 988654 3488
Q ss_pred EEEeCCcchhccCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhcc
Q 018231 268 IFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTL 322 (359)
Q Consensus 268 l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~~ 322 (359)
+++++ ++.+.+........++ .+....++..++|+.+.++
T Consensus 267 ~~~~~--------------~i~~~~~~~~~~~t~~-~~~~~~aaa~aaL~~~~~~ 306 (396)
T PRK04073 267 VAANR--------------DILGVFTPGSHGSTFG-GNPLACAVSIAALEVLEEE 306 (396)
T ss_pred EEEcH--------------HHHhhhcCCCCCCCCC-CCHHHHHHHHHHHHHHHhc
Confidence 88877 4555443221112223 3456666677889877654
No 282
>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase. This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.
Probab=99.43 E-value=9.6e-12 Score=121.00 Aligned_cols=244 Identities=13% Similarity=0.076 Sum_probs=138.0
Q ss_pred cCceeeCCCC-----CCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCC
Q 018231 47 KGLELIPSEN-----FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSG 121 (359)
Q Consensus 47 ~~i~l~~~~~-----~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG 121 (359)
..+++..+-. ..+|.|.+++.+.+.+.. .+ ....+...+ +++++++.+... + .|++++|
T Consensus 49 ~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~--~~-----~~~~~~~~~----lae~l~~~~~~~-~----~v~~~~s 112 (423)
T TIGR00713 49 EYIDYVLSWGPLILGHAHPRVVEAVKEALERGT--SY-----GAPTEAEIL----LAKEIISRVPSV-E----MVRFVNS 112 (423)
T ss_pred EEEEccccccccccCCCCHHHHHHHHHHHHhCC--cC-----CCCCHHHHH----HHHHHHHhCCcc-c----EEEEeCC
Confidence 4566655432 457999999999887521 11 111122333 557777776543 2 4777777
Q ss_pred hH-HHHHHHHhh--cCCCCeeeecCCCCCcccCcccc------------ccccceeeeeeeeEEEecccCCCCCCCCHHH
Q 018231 122 SP-SNFQVYTAL--LKPHDRIMALDLPHGGHLSHGYQ------------TDTKKISAVSIFFETMPYRLNESTGYIDYDQ 186 (359)
Q Consensus 122 ~~-a~~~~~~al--~~~Gd~Vl~~~~~~~~~~~~~~~------------~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~ 186 (359)
++ ++..+++.. ...+++|+.....|.+....... .........+. ..+.++. .|+++
T Consensus 113 GseA~e~Alk~ar~~~gr~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~------~d~~~ 184 (423)
T TIGR00713 113 GTEATMSAVRLARGYTGRDKIIKFEGCYHGHHDALLVKAGSGAATLGLPTSPGVPEDFAK--LTLVLPY------NDLEA 184 (423)
T ss_pred HHHHHHHHHHHHHHhhCCCEEEEEcCCCCCChhhhhccccCcccccCCCCCCCCCccccc--ceEEeCC------CCHHH
Confidence 77 888766643 34568999988776664210000 00000000000 0111111 28999
Q ss_pred HHHHhhh--hCCcEEEEc--CCCCCChhh----HHHHHHHHHHcCCEEEEeccccccccccCC-CCCCCC-CceEEEeCC
Q 018231 187 LEKSATL--FRPKLIVAG--ASAYARLYD----YERIRKVCNKQKAIMLADMAHISGLVAAGV-IPSPFE-YADVVTTTT 256 (359)
Q Consensus 187 l~~~i~~--~~~k~v~l~--~~n~g~~~~----l~~i~~la~~~~~~vivD~a~~~g~~~~~~-~~~~~~-~~D~v~~s~ 256 (359)
+++.+++ .++++|++. ++|+|.+.+ +++|.++|++||+++|+|++|. |...... ....+. ..|+++ .
T Consensus 185 l~~~i~~~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~-g~r~g~~~~~~~~~~~pDi~t--~ 261 (423)
T TIGR00713 185 LEEVFEEYGEEIAGVIVEPVAGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMT-GFRVALGGAQEYFGVEPDLTT--L 261 (423)
T ss_pred HHHHHHHcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcccc-ccccCcchhHHHhCCCcchhh--h
Confidence 9998873 267788874 666775443 7899999999999999999984 3321000 000011 247665 5
Q ss_pred CCcCCC-CCceEEEEeCCcchhccCCcchhhhHHHhhcccc--CCCCCCCCcHHHHHHHHHHHHHHhccccchhHhhh
Q 018231 257 HKSLRG-PRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAV--FPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVF 331 (359)
Q Consensus 257 ~K~l~g-p~gG~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~ 331 (359)
+|.+++ .+.|++++++ ++.+.+.... ........+....+|..++|+.+.++....+.+..
T Consensus 262 sK~l~~G~pig~v~~~~--------------~i~~~~~~~~~~~~~~T~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~ 325 (423)
T TIGR00713 262 GKIIGGGLPVGAFGGRR--------------EIMERLAPEGPVYQAGTLSGNPLAMAAGLATLKLLDEEGVYTELDEL 325 (423)
T ss_pred hhhhcCCCceeeeeEHH--------------HHHHhhCcCCCeeeccCCCCCHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 698853 3458888887 5555543211 11112235666677777889888765333443333
No 283
>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [].; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.
Probab=99.43 E-value=1.4e-12 Score=118.86 Aligned_cols=198 Identities=21% Similarity=0.296 Sum_probs=112.8
Q ss_pred HHHHHHHHhhhhccCCCCCCCCcccCCc-hhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhhcCCCCe
Q 018231 60 VSVMQAVGSVMTNKYSEGYPGARYYGGN-EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDR 138 (359)
Q Consensus 60 ~~v~~al~~~~~~~~~~g~~~~~~~~~~-~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al~~~Gd~ 138 (359)
..|++|+.+.-...+ ...+...|+.. .+.+.++ +-+++.||++..- +...+.||+.|+..++.++++|||+
T Consensus 27 ~KVL~Af~~~~vs~~--hf~~tTGYGY~D~GRd~le----~iyA~vfgaE~AL--VRpq~vSGTHAi~~~Lfg~LrpGD~ 98 (403)
T PF06838_consen 27 LKVLKAFQENRVSDS--HFAGTTGYGYDDIGRDKLE----RIYADVFGAEDAL--VRPQFVSGTHAIALALFGVLRPGDE 98 (403)
T ss_dssp HHHHHHHHHTT--GG--GCS---TT-TT-HHHHHHH----HHHHHHCT-SEEE--EETTS-SHHHHHHHHHHHH--TT-E
T ss_pred HHHHHHHHHcCCChh--hcCCCCcCCCCCccHHHHH----HHHHHHhCchhhh--hcccccchHHHHHHHHHhcCCCCCe
Confidence 577888876432211 11122333322 2355554 7899999997643 3334678988888899999999999
Q ss_pred eeecCC-CCCcc---cCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCC-CC-----C
Q 018231 139 IMALDL-PHGGH---LSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASA-YA-----R 208 (359)
Q Consensus 139 Vl~~~~-~~~~~---~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~~~n-~g-----~ 208 (359)
.+...- .|... ++..- -......-.|..++.++ +. +++.+|++.+++++++ +||++++.-|- |. .
T Consensus 99 ll~~tG~PYDTL~~VIG~~g-~~~GSL~e~Gi~Y~~v~--L~-~dg~~D~~~i~~~~~~-~tk~v~IQRSrGYs~R~sl~ 173 (403)
T PF06838_consen 99 LLSITGKPYDTLEEVIGIRG-NGPGSLKEFGIKYREVP--LT-EDGTIDWEAIKKALKP-NTKMVLIQRSRGYSWRPSLT 173 (403)
T ss_dssp EEESSSS--CCHHHHHTSSS-SSSSSTGGGT-EEEE----B--TTSSB-HHHHHHHHHT-TEEEEEEE-S-TTSSS----
T ss_pred EEEcCCCchhhHHHHhCCCC-CCCCChHHhCceeEEEe--ec-CCCCcCHHHHHHhhcc-CceEEEEecCCCCCCCCCCC
Confidence 996542 11110 00000 00001223466676775 44 5689999999999997 99999997333 43 4
Q ss_pred hhhHHHHHHHHHHc--CCEEEEeccccccccccCCCCCCCC-CceEEEeCCCCcCCC---CCceEEEEeCCc
Q 018231 209 LYDYERIRKVCNKQ--KAIMLADMAHISGLVAAGVIPSPFE-YADVVTTTTHKSLRG---PRGAMIFFRKGV 274 (359)
Q Consensus 209 ~~~l~~i~~la~~~--~~~vivD~a~~~g~~~~~~~~~~~~-~~D~v~~s~~K~l~g---p~gG~l~~~~~~ 274 (359)
+.+++++.+++|+. +++++||.+.. -+... ..|.. |+|++.+|.-|+.+| |.||++..++++
T Consensus 174 i~~I~~~i~~vk~~~p~~iifVDNCYG--EFvE~--~EP~~vGADl~aGSLIKNpGGgiAptGGYIaGr~~l 241 (403)
T PF06838_consen 174 IEEIKEIIKFVKEINPDVIIFVDNCYG--EFVET--QEPTEVGADLMAGSLIKNPGGGIAPTGGYIAGRKDL 241 (403)
T ss_dssp HHHHHHHHHHHHHH-TTSEEEEE-TTT--TTTSS--S-GGGGT-SEEEEETTSGGGTTT-SS-EEEEESHHH
T ss_pred HHHHHHHHHHHHhhCCCeEEEEeCCcc--eeccc--cCccccchhheeccceeCCCCCccCcCCEEechHHH
Confidence 55667777777664 78999999853 22211 12323 699999999998864 778999999864
No 284
>PTZ00125 ornithine aminotransferase-like protein; Provisional
Probab=99.42 E-value=1.3e-11 Score=119.13 Aligned_cols=224 Identities=15% Similarity=0.130 Sum_probs=128.1
Q ss_pred CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhhc----
Q 018231 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALL---- 133 (359)
Q Consensus 58 ~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al~---- 133 (359)
.+|.|.+++.+.+.. +.... ..++ .+... .+++.++++++.+. .++++||+.++..++....
T Consensus 48 ~~p~v~~a~~~~~~~-~~~~~--~~~~--~~~~~----~~~~~l~~~~~~~~-----~~~~~SGs~A~e~al~~~~~~~~ 113 (400)
T PTZ00125 48 CHPKILAALINQAQK-LTLTS--RAFY--NDVLG----LAEKYITDLFGYDK-----VLPMNSGAEAGETALKFARKWGY 113 (400)
T ss_pred CCHHHHHHHHHHHHh-ccccc--cccc--CHHHH----HHHHHHHhCCCCCE-----EEEeCCcHHHHHHHHHHHHHHHH
Confidence 479999999988764 31111 1111 12222 35577777777642 3556666668887777553
Q ss_pred ------CCCCeeeecCCCCCcccCccccccccc-ee--e--eeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc
Q 018231 134 ------KPHDRIMALDLPHGGHLSHGYQTDTKK-IS--A--VSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG 202 (359)
Q Consensus 134 ------~~Gd~Vl~~~~~~~~~~~~~~~~~~~~-~~--~--~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~ 202 (359)
..+++|++.+..+.+............ .. . ....+..+ ...|++++++.++..++++|++.
T Consensus 114 ~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~d~~~le~~l~~~~~~~v~~e 185 (400)
T PTZ00125 114 EVKGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFELV--------DYNDVEALEKLLQDPNVAAFIVE 185 (400)
T ss_pred hccCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhccCCCCCCCceEe--------CCCCHHHHHHHhCCCCeEEEEEc
Confidence 135778877755444321110000000 00 0 00001111 12389999999863378899887
Q ss_pred -CCC-CCChhh----HHHHHHHHHHcCCEEEEecccc-cccc----ccCCCCCCCCCceEEEeCCCCcCCCCC--ceEEE
Q 018231 203 -ASA-YARLYD----YERIRKVCNKQKAIMLADMAHI-SGLV----AAGVIPSPFEYADVVTTTTHKSLRGPR--GAMIF 269 (359)
Q Consensus 203 -~~n-~g~~~~----l~~i~~la~~~~~~vivD~a~~-~g~~----~~~~~~~~~~~~D~v~~s~~K~l~gp~--gG~l~ 269 (359)
..| +|.+.+ +++|.++|++||+++|+|++|+ +|.. ....... ..|++++| |+++++. -|+++
T Consensus 186 p~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~~~~~~~~~~---~pd~~~~s--K~l~~g~~~ig~v~ 260 (400)
T PTZ00125 186 PIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLLAHDHEGV---KPDIVLLG--KALSGGLYPISAVL 260 (400)
T ss_pred CccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhHHHhcCC---CCCEEEEc--ccccCCCcCcEEEE
Confidence 444 786666 9999999999999999999985 2211 1111111 25888876 9997543 38888
Q ss_pred EeCCcchhccCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhccc
Q 018231 270 FRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLI 323 (359)
Q Consensus 270 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~~~ 323 (359)
+++ ++.+.+........++ .+....++..++++.+.++.
T Consensus 261 ~~~--------------~~~~~~~~~~~~~t~~-~~~~~~~aa~~~l~~i~~~~ 299 (400)
T PTZ00125 261 AND--------------DVMLVIKPGEHGSTYG-GNPLACAVAVEALEVLKEEK 299 (400)
T ss_pred EcH--------------HHHhhccCCCCCCCCC-cCHHHHHHHHHHHHHHHhcC
Confidence 887 4455443221112223 34455666777888887543
No 285
>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]
Probab=99.42 E-value=1.6e-11 Score=112.83 Aligned_cols=178 Identities=12% Similarity=0.085 Sum_probs=124.4
Q ss_pred ccCCchhHHHHHHHHHHHHHHHcCC----CCCCCceeEEECCChH-HHHHHHHhhcCCCCeeeecCCCCCcccCcccccc
Q 018231 83 YYGGNEYIDMAESLCQKRALEAFRL----DPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTD 157 (359)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~a~~~g~----~~~~~~~~v~~tsG~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~ 157 (359)
.|.+.++...+++++.+.+.+.-|- +|+ ++++++|++ ++..++.-|..|||.-|++.|-|+++-..
T Consensus 116 ~fqdy~Gl~~frqa~A~Fm~~~r~~~v~fdP~----~~Vv~~G~T~ane~l~fcLadpgdafLvPtPyY~gfdrd----- 186 (471)
T KOG0256|consen 116 MFQDYHGLPSFRQAVAEFMERARGNRVKFDPE----RVVVTNGATSANETLMFCLADPGDAFLVPTPYYPGFDRD----- 186 (471)
T ss_pred hcccccCchHHHHHHHHHHHHHhCCCCccCcc----ceEEecccchhhHHHHHHhcCCCceeeecCCCCCccccc-----
Confidence 4556677888888888888777664 554 599999999 99977777899999999999766665321
Q ss_pred ccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhh-----hCCcEEEEc-CCC-CCCh---hhHHHHHHHHHHcCCEEE
Q 018231 158 TKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL-----FRPKLIVAG-ASA-YARL---YDYERIRKVCNKQKAIML 227 (359)
Q Consensus 158 ~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~-----~~~k~v~l~-~~n-~g~~---~~l~~i~~la~~~~~~vi 227 (359)
.--..|.++.++.+... +++.++.+++|+++.+ .++|.|++. |+| .|+. ..+..+.++|.++|+.+|
T Consensus 187 --l~~rTgveivpv~c~Ss-~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI 263 (471)
T KOG0256|consen 187 --LRWRTGVEIVPVHCSSS-NGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVI 263 (471)
T ss_pred --ceeccCceEEEEEeecC-CCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEE
Confidence 11234655555554333 5679999999988753 256777776 999 7744 456778888999999999
Q ss_pred EeccccccccccCC-------CCCC--CCCceEEEeCCCCcCCCCCc---eEEEEeCC
Q 018231 228 ADMAHISGLVAAGV-------IPSP--FEYADVVTTTTHKSLRGPRG---AMIFFRKG 273 (359)
Q Consensus 228 vD~a~~~g~~~~~~-------~~~~--~~~~D~v~~s~~K~l~gp~g---G~l~~~~~ 273 (359)
+|++.+..++...- ...+ ....--++.|.+|-| |.+| |+|+..++
T Consensus 264 ~DEIya~sVF~~~~F~Sv~ev~~~~~~~~~rvHivyslSKD~-GlpGfRvGviYS~ne 320 (471)
T KOG0256|consen 264 SDEIYAGSVFDKSEFRSVLEVRKDPHLDPDRVHIVYSLSKDF-GLPGFRVGVIYSNNE 320 (471)
T ss_pred eehhhcccccCccCceEHHHHhhccccCCCcEEEEEEecccc-CCCceEEEEEEecCh
Confidence 99998655443210 0000 001225788999987 4445 99999885
No 286
>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.
Probab=99.42 E-value=2.7e-13 Score=124.94 Aligned_cols=228 Identities=16% Similarity=0.184 Sum_probs=55.5
Q ss_pred CCCCCcHHHHHHHHhhhhccCCCC-CCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhh
Q 018231 54 SENFTSVSVMQAVGSVMTNKYSEG-YPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL 132 (359)
Q Consensus 54 ~~~~~~~~v~~al~~~~~~~~~~g-~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al 132 (359)
|-.++++++.+++.+...+ |.+= |- .-.+..+.. ...+.+.++.++|++. .+++.+++.|.++++.++
T Consensus 14 GRs~l~~~a~~a~~~~a~~-Y~nLE~d---l~~G~Rg~R--~~~v~~ll~~ltgAea-----A~VvNnnaAAv~L~l~~l 82 (367)
T PF03841_consen 14 GRSPLSEEAIEAVAEVASG-YSNLEYD---LETGKRGSR--YAHVEELLCELTGAEA-----ALVVNNNAAAVLLALNTL 82 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccc-ccccccc---ccccccccc--cccccccccccccccc-----cccccccccccccccccc
Confidence 4457889999998877654 3110 10 000111110 0124477888999875 255556666777566666
Q ss_pred cCCCCeeeecCC---CCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc-CCCC--
Q 018231 133 LKPHDRIMALDL---PHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASAY-- 206 (359)
Q Consensus 133 ~~~Gd~Vl~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n~-- 206 (359)
. +|.+|++..- +.++.+.. ...+...|+.++.| ... ....+++++++|++ +|.+++-. +||+
T Consensus 83 a-~~~EvIvsRGelVeiGgsFRi-----p~vm~~sGa~lvEV--Gtt---N~t~~~Dye~AI~e-~Ta~ll~Vh~Sn~~i 150 (367)
T PF03841_consen 83 A-KGKEVIVSRGELVEIGGSFRI-----PDVMRQSGARLVEV--GTT---NRTHLSDYEKAITE-NTAALLKVHTSNFRI 150 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred c-ccccccccccccccccccccc-----cccccccccccccc--ccc---cccccccccccccc-ccccccccccccccc
Confidence 4 5677877642 23332221 12445567666444 222 34467888999998 89887654 7884
Q ss_pred -C--ChhhHHHHHHHHHHcCCEEEEecccccccc----ccCC------CCCCCCCceEEEeCCCCcCCCCCceEEEEeCC
Q 018231 207 -A--RLYDYERIRKVCNKQKAIMLADMAHISGLV----AAGV------IPSPFEYADVVTTTTHKSLRGPRGAMIFFRKG 273 (359)
Q Consensus 207 -g--~~~~l~~i~~la~~~~~~vivD~a~~~g~~----~~~~------~~~~~~~~D~v~~s~~K~l~gp~gG~l~~~~~ 273 (359)
| ...+++++++++++|++++++|... |.+ +.++ ...--.|+|+++||+.|.|+||+.|+|+.++
T Consensus 151 ~GFt~~~~~~el~~la~~~~lp~i~Dlgs--G~l~dl~~~gl~~Ep~v~~~~~~GaDlV~fSGdKlLGGPQaGiI~Gkk- 227 (367)
T PF03841_consen 151 QGFTGEVSLEELAELAKEHGLPVIVDLGS--GLLVDLSPYGLPDEPTVQEYLAAGADLVTFSGDKLLGGPQAGIIVGKK- 227 (367)
T ss_dssp ----------HHHHHHHHHT--EEEE-TT--HHHHHHHTT----------CCCCT-SEEEEETTSSSSS-S-EEEEEEH-
T ss_pred ccccccccHHHHHHHHhhcCCcEEEECCC--CCCcCcccccCccccHHHHHhhcCCCEEEEECCCcCCCCCeEEEEeCH-
Confidence 4 3457999999999999999999874 222 1111 1111127999999999999999999999999
Q ss_pred cchhccCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhc
Q 018231 274 VKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCT 321 (359)
Q Consensus 274 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~ 321 (359)
++.+++++... .+.--.+=..++++.++|+....
T Consensus 228 -------------~lI~~lk~~pl-~RalrvdK~tla~L~atL~~Y~~ 261 (367)
T PF03841_consen 228 -------------ELIEKLKKHPL-GRALRVDKLTLAALEATLRLYLD 261 (367)
T ss_dssp -------------HHHHHHHHHHH-TTT-B--HHHHHHHHHHHHH---
T ss_pred -------------HHHHHHhhCCC-cceEeeCHHHHHHHHHHHHHHHH
Confidence 56665543311 12123345788999999998775
No 287
>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated. Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.
Probab=99.42 E-value=3.2e-12 Score=120.99 Aligned_cols=232 Identities=16% Similarity=0.180 Sum_probs=143.8
Q ss_pred CCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhhcC-C
Q 018231 57 FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLK-P 135 (359)
Q Consensus 57 ~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al~~-~ 135 (359)
.+++..+++|.. .+ ..|++......|+ +.+++++|.+. .+...+|..++..++..+++ |
T Consensus 54 apS~~m~aAM~~--GD---------D~Y~gdpSv~~Le----e~vael~G~E~-----alpthqGRgaE~Il~~~~~~~~ 113 (467)
T TIGR02617 54 AVTQSMQAAMMR--GD---------EAYSGSRSYYALA----ESVKNIFGYQY-----TIPTHQGRGAEQIYIPVLIKKR 113 (467)
T ss_pred CCCHHHHHHHHc--CC---------cccccCchHHHHH----HHHHHHhCCce-----EEECCCCchHHHHHHHhhcccc
Confidence 477888887775 11 2234445555665 78888999886 24444776688877788888 7
Q ss_pred CCeeeecCC----CCCcccCccccccccceeeeeeeeEEEecc------cCC-CCCCCCHHHHHHHhhhh---CCcEEEE
Q 018231 136 HDRIMALDL----PHGGHLSHGYQTDTKKISAVSIFFETMPYR------LNE-STGYIDYDQLEKSATLF---RPKLIVA 201 (359)
Q Consensus 136 Gd~Vl~~~~----~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------~~~-~~~~~d~e~l~~~i~~~---~~k~v~l 201 (359)
||++.+... .|..++... ...+.+.|+..+.++.+ .+. .++.+|+++|++.|.+. +...+..
T Consensus 114 g~e~g~~~~~~~v~hn~~fett----~g~a~l~G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~~g~~~i~~v~~ 189 (467)
T TIGR02617 114 EQEKGLDRSKMVAFSNYFFDTT----QGHSQINGCTARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVA 189 (467)
T ss_pred cccccccccccccceEEEEecc----hHHHHHcCceeecccchhhcccccCCCCCCCcCHHHHHHHHhhcCCCCceeeee
Confidence 898885442 233332211 11345566555443221 121 35789999999999852 2333333
Q ss_pred c-CCC--CCC---hhhHHHHHHHHHHcCCEEEEecccccc-cc--------ccCCCCCC-----CCCceEEEeCCCCcCC
Q 018231 202 G-ASA--YAR---LYDYERIRKVCNKQKAIMLADMAHISG-LV--------AAGVIPSP-----FEYADVVTTTTHKSLR 261 (359)
Q Consensus 202 ~-~~n--~g~---~~~l~~i~~la~~~~~~vivD~a~~~g-~~--------~~~~~~~~-----~~~~D~v~~s~~K~l~ 261 (359)
. .+| -|. ...++++.++|++||+.++.|+|-.+. +. ..+..... +..+|.+++|+.|.++
T Consensus 190 tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~aDsvt~slsKglg 269 (467)
T TIGR02617 190 TITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYKYADMLAMSAKKDAM 269 (467)
T ss_pred eEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhccCCEEEEEcCCCCC
Confidence 3 445 243 445778899999999999999987653 22 12221111 2358999999999999
Q ss_pred CCCceEEEEeCCcchhccCCcchhhhHHHhhccc--cCCCC--CCCCcHHHHHHHHHHHHHHhcc
Q 018231 262 GPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQA--VFPGL--QGGPHNHTITGLAVALKQVCTL 322 (359)
Q Consensus 262 gp~gG~l~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~--~gt~~~~~i~al~~Al~~~~~~ 322 (359)
+|-||+|+.+++- ++++..+.+.. .+.+. +|....-.+-|++..|++..++
T Consensus 270 ApvGg~Lag~d~~----------~~~l~~~~~~~~i~~EGf~tYGGlagrd~ea~a~Gl~e~~~~ 324 (467)
T TIGR02617 270 VPMGGLLCFKDDS----------FFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNL 324 (467)
T ss_pred CcccceEEecchh----------HHHHHHHHHhhcccccCCcCcCchhHHHHHHHHhhhhhcccH
Confidence 9999999999850 00222222211 11222 3777888889999888887654
No 288
>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
Probab=99.40 E-value=2.2e-11 Score=117.47 Aligned_cols=244 Identities=13% Similarity=0.112 Sum_probs=132.6
Q ss_pred cCceeeCCC--C---CCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCC
Q 018231 47 KGLELIPSE--N---FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSG 121 (359)
Q Consensus 47 ~~i~l~~~~--~---~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG 121 (359)
..|++.++- . .-+|.|.+++.+.+.+.+..+ . .+. .+...+ +.++++++++.+. ..++.||
T Consensus 36 ~ylD~~~g~~~~~lGh~~p~v~~a~~~~~~~~~~~~---~-~~~-~~~~~~----la~~L~~~~~~~~-----~~f~~SG 101 (397)
T TIGR03246 36 EYIDFAGGIAVNALGHAHPELVKALIEQADKLWHIG---N-GYT-NEPVLR----LAKKLVDATFADK-----VFFCNSG 101 (397)
T ss_pred EEEECCcCHhhccCCCCCHHHHHHHHHHHHhccccc---C-ccC-CHHHHH----HHHHHHhhCCCCE-----EEEeCCc
Confidence 346665431 1 247999999998877522111 1 111 122223 5577888776532 3445556
Q ss_pred hHHHHHHHHhh--c------CCCCeeeecCCCCCcccCccccc-----cccceeeeeeeeEEEecccCCCCCCCCHHHHH
Q 018231 122 SPSNFQVYTAL--L------KPHDRIMALDLPHGGHLSHGYQT-----DTKKISAVSIFFETMPYRLNESTGYIDYDQLE 188 (359)
Q Consensus 122 ~~a~~~~~~al--~------~~Gd~Vl~~~~~~~~~~~~~~~~-----~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~ 188 (359)
+.++..++... . ...++|+..+..|.+........ +.....-....+..+ +. .|+++++
T Consensus 102 seA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------~d~~~l~ 173 (397)
T TIGR03246 102 AEANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHA--PY------NDLAAAK 173 (397)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCceEEe--CC------CCHHHHH
Confidence 66888777654 1 12356776665444432111000 000000000011111 12 2899999
Q ss_pred HHhhhhCCcEEEEcCCC--CC----ChhhHHHHHHHHHHcCCEEEEeccccccccccCC--CCCCCC-CceEEEeCCCCc
Q 018231 189 KSATLFRPKLIVAGASA--YA----RLYDYERIRKVCNKQKAIMLADMAHISGLVAAGV--IPSPFE-YADVVTTTTHKS 259 (359)
Q Consensus 189 ~~i~~~~~k~v~l~~~n--~g----~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~--~~~~~~-~~D~v~~s~~K~ 259 (359)
+.+.+ ++++|++.|.+ .| ....+++|.++|++||+++|+|++| .|.-..+. ....+. ..|++++| |.
T Consensus 174 ~~l~~-~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~-tG~Gr~G~~~a~~~~gv~pDi~t~~--K~ 249 (397)
T TIGR03246 174 ALISD-KTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQ-TGVGRTGELYAYMHYGVTPDILTSA--KA 249 (397)
T ss_pred HHhcc-CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechh-hcCCccccchhhhhcCCCCCEEEee--hh
Confidence 99976 78899888555 34 2345999999999999999999998 34311111 000011 36888664 99
Q ss_pred CC-CCCceEEEEeCCcchhccCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhccccchhHhhh
Q 018231 260 LR-GPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVF 331 (359)
Q Consensus 260 l~-gp~gG~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~ 331 (359)
++ |.+-|++++++ ++.+.+........++ .+....++..++|+.+.++...++.+..
T Consensus 250 lggG~pigav~~~~--------------~i~~~~~~~~~~~t~~-~~p~~~aaa~a~l~~~~~~~l~~~~~~~ 307 (397)
T TIGR03246 250 LGGGFPIGAMLTTT--------------EIAAHLKVGTHGTTYG-GNPLACAVAGKVLDLVNTPELLAGVKQR 307 (397)
T ss_pred hhCCcceeEEEEcH--------------HHHHhccCCCcCCCCC-CCHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 84 33338888877 4444443221112232 3456677777889887654433444433
No 289
>PRK02627 acetylornithine aminotransferase; Provisional
Probab=99.40 E-value=2e-11 Score=117.58 Aligned_cols=222 Identities=12% Similarity=0.092 Sum_probs=127.4
Q ss_pred cHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHhhcCCC-
Q 018231 59 SVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPH- 136 (359)
Q Consensus 59 ~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~al~~~G- 136 (359)
.|.+.+++.+.+.... ... ..|. ..++..+.++++++.|.+ .+++++|++ ++.+++..+...+
T Consensus 57 ~p~v~~a~~~~~~~~~---~~~-~~~~-----~~~~~~la~~l~~~~~~~------~v~~~~gg~eA~~~al~~a~~~~~ 121 (396)
T PRK02627 57 HPKLVEAIQEQAAKLI---HTS-NLYY-----IEPQEELAEKLVELSGMD------KVFFCNSGAEANEAAIKLARKYGH 121 (396)
T ss_pred CHHHHHHHHHHHhhcc---ccc-cccC-----CHHHHHHHHHHHhhcCCC------EEEECCCcHHHHHHHHHHHHHHhc
Confidence 5889999988776521 111 1111 233344668888887763 388888888 8888887664433
Q ss_pred ------CeeeecCCCCCcccCccccccccceeeeeeeeEEEe-cccCCCCC----CCCHHHHHHHhhhhCCcEEEEcCCC
Q 018231 137 ------DRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMP-YRLNESTG----YIDYDQLEKSATLFRPKLIVAGASA 205 (359)
Q Consensus 137 ------d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~-~~~~~~~~----~~d~e~l~~~i~~~~~k~v~l~~~n 205 (359)
++|++.+..|.+...... ...+....... .+.. .+. ..|++++++.+.+ ++++|++.+.+
T Consensus 122 ~~~~~~~~ii~~~~~yhg~~~~~~-------~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~l~~~i~~-~~~~vii~p~~ 192 (396)
T PRK02627 122 KKGIEKPEIITAENSFHGRTLATL-------SATGQPKYQEGFEPLV-EGFIYVPFNDIEALKAAITD-KTAAVMLEPIQ 192 (396)
T ss_pred ccCCCCCeEEEECCCcCcccHHHH-------HhcCCccccccCCCCC-CCceEeCCCCHHHHHHhcCC-CeEEEEEeccc
Confidence 678887755543321100 00110000000 0011 111 2289999999976 89999987433
Q ss_pred --CC----ChhhHHHHHHHHHHcCCEEEEeccccccccccCC-CCC-CCC-CceEEEeCCCCcCCC-CCceEEEEeCCcc
Q 018231 206 --YA----RLYDYERIRKVCNKQKAIMLADMAHISGLVAAGV-IPS-PFE-YADVVTTTTHKSLRG-PRGAMIFFRKGVK 275 (359)
Q Consensus 206 --~g----~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~-~~~-~~~-~~D~v~~s~~K~l~g-p~gG~l~~~~~~~ 275 (359)
+| ....+++|.++|++||+++|+|++++ |....+. ... .+. ..|++++| |.+++ .+-|++++++
T Consensus 193 ~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~-g~g~~g~~~~~~~~~~~pdi~t~s--K~~~~G~rig~~~~~~--- 266 (396)
T PRK02627 193 GEGGVNPADKEYLQALRELCDENGILLILDEVQT-GMGRTGKLFAYQHYGIEPDIMTLA--KGLGGGVPIGAVLAKE--- 266 (396)
T ss_pred CCCCCccCCHHHHHHHHHHHHHcCCEEEEechhc-CCCccCceeeehhcCCCCCEEEEc--chhhCCcccEEEEEcH---
Confidence 44 22358899999999999999999986 2211110 000 011 24777655 98863 2338888876
Q ss_pred hhccCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhcc
Q 018231 276 EINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTL 322 (359)
Q Consensus 276 ~~~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~~ 322 (359)
++.+.+........+ +.+....++..++++.+..+
T Consensus 267 -----------~~~~~~~~~~~~~t~-~~~~~~~~aa~~~l~~~~~~ 301 (396)
T PRK02627 267 -----------KVADVFTPGDHGSTF-GGNPLACAAALAVIEIIEEE 301 (396)
T ss_pred -----------HHHhccCCCCCCCCC-CCCHHHHHHHHHHHHHHhhc
Confidence 444444322111122 34556677777888877654
No 290
>KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=9.5e-12 Score=115.61 Aligned_cols=243 Identities=16% Similarity=0.122 Sum_probs=156.4
Q ss_pred CCCCCCcHHHHHHHHhhhhccCCCCCCCCcc-cCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHh
Q 018231 53 PSENFTSVSVMQAVGSVMTNKYSEGYPGARY-YGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTA 131 (359)
Q Consensus 53 ~~~~~~~~~v~~al~~~~~~~~~~g~~~~~~-~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~a 131 (359)
.+..+..+.+.+++..+-... .+++. .+..+...+ +.+.+++++|.+. .++|.-|-..|.+.+.+
T Consensus 151 ~~~g~ca~~~~~~~~kygl~~-----css~~e~G~~~~hke----lE~l~A~f~g~e~-----a~vF~mGf~TNs~~~p~ 216 (519)
T KOG1357|consen 151 QSVGPCAEASLKSFDKYGLSR-----CSSRHEAGTTEEHKE----LEELVARFLGVED-----AIVFSMGFATNSMNIPS 216 (519)
T ss_pred ccCCcCChHHHHHHHHhcccc-----cccchhcccHHHHHH----HHHHHHHhcCCcc-----eEEEeccccccccCcce
Confidence 455566788888777653221 11111 122222333 5588999999976 48998897777777889
Q ss_pred hcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhh------CC-----cEEE
Q 018231 132 LLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF------RP-----KLIV 200 (359)
Q Consensus 132 l~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~------~~-----k~v~ 200 (359)
++.||.-|+.....|.+... ++++.|+..++. ..+ |.++||+.+.+. +| |+++
T Consensus 217 l~~~gsLIiSDelNHaSi~~--------GaRLSgAtiRVf--kHN------dm~~LEr~Lrd~I~~gqP~Thrp~kki~i 280 (519)
T KOG1357|consen 217 LLGKGSLIISDELNHASLIT--------GARLSGATTRVF--RHN------DMQGLERLLRDAIVYGQPKTHRPWKKILI 280 (519)
T ss_pred eecCCcceeeccccchheec--------cccccCceEEEE--ecC------CHHHHHHHHHHHHhcCCCCcCCcchheee
Confidence 99999999999888887754 778888877655 344 677777766541 22 3444
Q ss_pred Ec---CCCCCChhhHHHHHHHHHHcCCEEEEecccccccccc-C--CCC-CC--CCCceEEEeCCCCcCCCCCceEEEEe
Q 018231 201 AG---ASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAA-G--VIP-SP--FEYADVVTTTTHKSLRGPRGAMIFFR 271 (359)
Q Consensus 201 l~---~~n~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~-~--~~~-~~--~~~~D~v~~s~~K~l~gp~gG~l~~~ 271 (359)
+. .+.-|.+.++.++.++++++.++++.|+||+.|++.. + +.. ++ ...+|++.+.+.|+|+ ..||++..+
T Consensus 281 ivegiysmEg~iv~Lp~vvalkkkykayl~lDEAHSiGA~g~tGrgvce~~g~d~~dvDImMGtftKSfg-a~GGyiags 359 (519)
T KOG1357|consen 281 CVEGIYSMEGTIVDLPEVVALKKKYKAYLYLDEAHSIGAMGATGRGVCEYFGVDPEDVDIMMGTFTKSFG-AAGGYIAGS 359 (519)
T ss_pred eeccceeccCeecccHHHHHhhccccEEEEeeccccccccCCCCcceeeccCCCchhheeecceehhhcc-cccceecCc
Confidence 43 4446788999999999999999999999999998842 1 111 11 1258999999999874 457999888
Q ss_pred CCcchhccCCcchhhhHHHhhccccCCCCC-CCCcHHHHHHHHHHHHHHhcccc--chhHhhhccccchhhh
Q 018231 272 KGVKEINKQGKEVFYDYEEKINQAVFPGLQ-GGPHNHTITGLAVALKQVCTLIT--FSHIHVFSLHVYPAFV 340 (359)
Q Consensus 272 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-gt~~~~~i~al~~Al~~~~~~~~--~~~~~~~~l~~~~~~~ 340 (359)
+ ++.+.+......... .+.+.+...-...+++.+..+.+ .++.+...+..+.+++
T Consensus 360 k--------------~lid~lrt~s~~~~yat~~sppvaqq~~ssl~~i~G~dgt~~g~~k~~~l~~ns~yf 417 (519)
T KOG1357|consen 360 K--------------ELIDYLRTPSPSALYATSLSPPVAQQILTSVKHIMGEDGTNRGRQKIERLAENSRYF 417 (519)
T ss_pred H--------------HHHhhhccCCCceeecccCChHHHHHHHHHHHhhcCCCcccHHHHHHHHHHhhhHHH
Confidence 8 455544332222222 33344444555577777776422 1333333444444444
No 291
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=99.39 E-value=2.5e-11 Score=112.98 Aligned_cols=267 Identities=13% Similarity=0.153 Sum_probs=156.1
Q ss_pred hcCceeeCCCCC-----CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECC
Q 018231 46 WKGLELIPSENF-----TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLS 120 (359)
Q Consensus 46 ~~~i~l~~~~~~-----~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~ts 120 (359)
++.|++.++-.- .+|.+++++.+-+..-+- .+..|+. +... .+.+++.+..+ ..+ .|+|++
T Consensus 42 ~~YlDf~~Giav~~lGH~hP~iv~al~~Q~~kl~h---~sn~~~~--~~~~----~la~~L~~~s~-~~d----~vff~N 107 (404)
T COG4992 42 REYLDFAAGIAVNNLGHCHPALVEALKEQAEKLWH---VSNLFYN--EPQA----ELAEKLVELSP-FAD----RVFFCN 107 (404)
T ss_pred CEeeeeccceeeeccCCCCHHHHHHHHHHHHHhhh---cccccCC--hHHH----HHHHHHHhhCc-ccc----EEEEcC
Confidence 356787755432 479999999886654320 0111111 2222 25577887776 332 488887
Q ss_pred ChH-HHHHHHHhh---cC-C-CCeeeecCCCCCcccC-----ccccccccce--eeeeeeeEEEecccCCCCCCCCHHHH
Q 018231 121 GSP-SNFQVYTAL---LK-P-HDRIMALDLPHGGHLS-----HGYQTDTKKI--SAVSIFFETMPYRLNESTGYIDYDQL 187 (359)
Q Consensus 121 G~~-a~~~~~~al---~~-~-Gd~Vl~~~~~~~~~~~-----~~~~~~~~~~--~~~g~~~~~v~~~~~~~~~~~d~e~l 187 (359)
+++ |+..++... .. | .-+|+.....+.+... .+.+-|+... ...| ++.+| .+ |++++
T Consensus 108 SGaEA~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~g--~~~vp--fn------Di~al 177 (404)
T COG4992 108 SGAEANEAALKLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLPG--FRHVP--FN------DIEAL 177 (404)
T ss_pred CcHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcCCccceeeeccCChhhccCCCCCCCC--ceecC--CC------CHHHH
Confidence 777 999877653 22 2 2467777655554321 0111111111 0111 22222 23 89999
Q ss_pred HHHhhhhCCcEEEEcCCC--CCC----hhhHHHHHHHHHHcCCEEEEeccccc-cccccCCCCCC-CC-CceEEEeCCCC
Q 018231 188 EKSATLFRPKLIVAGASA--YAR----LYDYERIRKVCNKQKAIMLADMAHIS-GLVAAGVIPSP-FE-YADVVTTTTHK 258 (359)
Q Consensus 188 ~~~i~~~~~k~v~l~~~n--~g~----~~~l~~i~~la~~~~~~vivD~a~~~-g~~~~~~~~~~-~~-~~D~v~~s~~K 258 (359)
++++++ +|.+|++.|-- -|. ..-++.+.++|++||+++|.|++|+. |.. ..+.... .. ..|+++.. |
T Consensus 178 ~~ai~~-~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRT-Gk~fA~e~~gV~PDI~tla--K 253 (404)
T COG4992 178 EAAIDE-DTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRT-GKLFAYEHYGVEPDILTLA--K 253 (404)
T ss_pred HHHhcc-CeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCcc-chHHHHHHhCCCCCEEEee--c
Confidence 999998 99999986433 342 23388999999999999999999952 221 1110000 00 25899887 9
Q ss_pred cCCCCCc-eEEEEeCCcchhccCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhccccchhHhhhccccch
Q 018231 259 SLRGPRG-AMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYP 337 (359)
Q Consensus 259 ~l~gp~g-G~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~~l~~~~ 337 (359)
.|+|.-. |+++.++ ...+.+....--..+| -|..+.++..++++.+.++...++.++..-....
T Consensus 254 ~LgGG~PigA~la~~--------------~~~~~~~~G~HgSTfG-GNpLacAv~~a~l~~l~~e~ll~~v~~~g~~~~~ 318 (404)
T COG4992 254 ALGGGFPIGAMLATE--------------EIASAFTPGDHGSTFG-GNPLACAVALAVLEVLLEEGLLENVREKGEYLLQ 318 (404)
T ss_pred cccCCccceeeEEch--------------hhhhcCCCCcccCCCC-cCHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH
Confidence 9976444 8888875 3333332221112232 3567778888999999998888888877544444
Q ss_pred hhhhcccCCCccccCCCC
Q 018231 338 AFVSNQNNSENIEEDKGR 355 (359)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~ 355 (359)
+...-+..+..+-+++|+
T Consensus 319 ~L~~l~~~~~~v~~vRG~ 336 (404)
T COG4992 319 RLRELKRRYPLVKEVRGR 336 (404)
T ss_pred HHHHHhhcCCceeeeecc
Confidence 443224444467777776
No 292
>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]
Probab=99.38 E-value=8.5e-12 Score=115.60 Aligned_cols=173 Identities=16% Similarity=0.124 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH---HHHHHHHhh-cCCC----CeeeecCCCCCcccCccccccccce
Q 018231 90 IDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP---SNFQVYTAL-LKPH----DRIMALDLPHGGHLSHGYQTDTKKI 161 (359)
Q Consensus 90 ~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~---a~~~~~~al-~~~G----d~Vl~~~~~~~~~~~~~~~~~~~~~ 161 (359)
..++-..+++|+++..|.+. +.+..-+|+. +-+++++++ -..| +.+|+++..|+.+.. .+
T Consensus 107 ~l~li~~Lq~~L~~ITG~Da----vsLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGTNPA--------SA 174 (496)
T COG1003 107 YLELIYELQEWLKEITGMDA----VSLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGTNPA--------SA 174 (496)
T ss_pred HHHHHHHHHHHHHHhcCCce----eeccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCCChh--------hH
Confidence 44444457799999999986 4466667877 444477776 3343 579999988887733 35
Q ss_pred eeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCC-CC-ChhhHHHHHHHHHHcCCEEEEecccccccccc
Q 018231 162 SAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASA-YA-RLYDYERIRKVCNKQKAIMLADMAHISGLVAA 239 (359)
Q Consensus 162 ~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~~~n-~g-~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~ 239 (359)
.+.|.+++.|+ .+ +++.+|+|+|++++.+ ++.+++++.+| .| ...++.+|+++.+++|..|..|+|..-..+.
T Consensus 175 am~G~~VV~V~--~~-~~G~VDlddLk~k~~~-~~AalMiTnPsT~GvFE~~I~ei~~ivH~~Gg~vY~DGANlNA~vG- 249 (496)
T COG1003 175 AMAGFKVVVVK--CD-ENGNVDLDDLRAKAED-NLAALMITNPSTLGVFEEDIREICEIVHEAGGQVYYDGANLNAIVG- 249 (496)
T ss_pred hhcCceEEEEe--cC-CCCCccHHHHHHHhcc-ceeEEEeccCcccccchhhHHHHHHHHHHcCCEEEecCcchhhhhc-
Confidence 56786676664 56 6799999999999997 89999998555 67 4567999999999999999999997433322
Q ss_pred CCCCCCCCCceEEEeCCCCcCCCCCc------eEEEEeCCcchhccC
Q 018231 240 GVIPSPFEYADVVTTTTHKSLRGPRG------AMIFFRKGVKEINKQ 280 (359)
Q Consensus 240 ~~~~~~~~~~D~v~~s~~K~l~gp~g------G~l~~~~~~~~~~~~ 280 (359)
...-+..|+|++-...||+|+.|.| |-+.+++.+.+.+.+
T Consensus 250 -~~rPGd~G~DV~HlNLHKTF~iPHGGGGPG~GPvgVk~~L~pfLP~ 295 (496)
T COG1003 250 -LARPGDMGFDVVHLNLHKTFCIPHGGGGPGAGPVGVKAHLAPFLPG 295 (496)
T ss_pred -cccccccccceEEeecccccccCCCCCCCCCCceehHhhccccCCC
Confidence 1222233699999999999964433 677887765544433
No 293
>PRK05367 glycine dehydrogenase; Provisional
Probab=99.38 E-value=3.5e-12 Score=133.37 Aligned_cols=155 Identities=14% Similarity=0.084 Sum_probs=112.6
Q ss_pred HHHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHhh-cCCC--CeeeecCCCCCcccCccccccccceeeeeeeeEEE
Q 018231 96 LCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTAL-LKPH--DRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETM 171 (359)
Q Consensus 96 ~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~al-~~~G--d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v 171 (359)
..+..+++++|++.. ++.+..+++ +..++++++ +++| |+|++++..|++...++.. .+...|.+++.+
T Consensus 125 ~~Qt~la~LtG~~~a----naSl~d~aTAa~ea~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t----~a~~~G~ev~~~ 196 (954)
T PRK05367 125 NFQTMVADLTGLEIA----NASLLDEATAAAEAMALAKRVSKSKSNRFFVDDDVHPQTLDVLRT----RAEPLGIEVVVG 196 (954)
T ss_pred HHHHHHHHHHCCChh----hccccccHHHHHHHHHHhhhhccCCCCEEEEcCccCHHHHHHHHH----HHHhCCCEEEEe
Confidence 378999999999885 488988888 555566666 5664 9999999999877654331 123456666666
Q ss_pred ecccCCCCCCCCHHHHHHHhhhhCCcEEEEc-CCCCCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCce
Q 018231 172 PYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYAD 250 (359)
Q Consensus 172 ~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D 250 (359)
+ .+ + |++ .+ ++..+++. |+++|.+.|+++|+++||++|+++++|+.+.+.....+....+ +|
T Consensus 197 ~--~~-~----d~~------~~-~~~~vlvq~p~~~G~i~d~~~i~~~ah~~Gal~~vda~~~Al~~l~~pge~G---aD 259 (954)
T PRK05367 197 D--AA-K----ALD------HD-DVFGVLLQYPGTSGEVRDYTALIAAAHARGALVAVAADLLALTLLTPPGEMG---AD 259 (954)
T ss_pred c--Cc-c----CCC------cc-cEEEEEEecCCCCeeeccHHHHHHHHHHcCCEEEEEehhhhccCCCChhhcC---CC
Confidence 4 32 1 111 22 45566666 5559999999999999999999999999875444443433444 99
Q ss_pred EEEeCCCCc-----CCCCCceEEEEeCCcc
Q 018231 251 VVTTTTHKS-----LRGPRGAMIFFRKGVK 275 (359)
Q Consensus 251 ~v~~s~~K~-----l~gp~gG~l~~~~~~~ 275 (359)
++++++||| ++||..|++++++++.
T Consensus 260 i~vgs~qkfg~P~g~GGP~aGflavr~~~~ 289 (954)
T PRK05367 260 IAVGSAQRFGVPMGFGGPHAAYFAVRDAYK 289 (954)
T ss_pred EEEeeCcccCCCCCCCCCCEEEEEECHHHH
Confidence 999999998 6777559999998753
No 294
>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]
Probab=99.35 E-value=1.6e-10 Score=110.52 Aligned_cols=278 Identities=13% Similarity=0.039 Sum_probs=156.0
Q ss_pred CceeeCCCC-----CCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEEC-CC
Q 018231 48 GLELIPSEN-----FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSL-SG 121 (359)
Q Consensus 48 ~i~l~~~~~-----~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~t-sG 121 (359)
.|++.++-+ -.+|.|++|+.+.+..-. + ....+.. .+...+ +.+++.+.+-.+... .++++ ||
T Consensus 58 ylDf~sgi~v~~~GH~hP~Vv~Av~~q~~~~~-h--~~~~~~~-~e~~v~----~ae~L~~~~p~~~~~---~~~f~~sG 126 (447)
T COG0160 58 YLDFLSGIAVLNLGHNHPRVVEAVKRQLAKLN-H--THTRDLY-YEPYVE----LAEKLTALAPGSGLK---KVFFGNSG 126 (447)
T ss_pred EEEcccCcchhccCCCCHHHHHHHHHHHHHhh-c--ccCCccc-chhHHH----HHHHHHHhCCcccCC---eEEecCCc
Confidence 466655333 247999999988665411 0 0111111 122221 446666655542111 35555 55
Q ss_pred hHHHHHHHHhh--cCCCCeeeecCCCCCcccC------ccccccccceeeeeeeeEEEecccCCC-CC--------CCCH
Q 018231 122 SPSNFQVYTAL--LKPHDRIMALDLPHGGHLS------HGYQTDTKKISAVSIFFETMPYRLNES-TG--------YIDY 184 (359)
Q Consensus 122 ~~a~~~~~~al--~~~Gd~Vl~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~~v~~~~~~~-~~--------~~d~ 184 (359)
+.|+.+++... ...+..|+.+.-.|.+... .....++.+..-..-.+..+|++.... .+ .-..
T Consensus 127 aeA~E~AiKiAr~~Tgr~~viaf~~afHG~T~galslT~~~~~~~~~~~~~~~~v~~~Pyp~~yr~p~~~~~~~~~~~~~ 206 (447)
T COG0160 127 AEAVEAAIKIARAYTGRPGVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDAL 206 (447)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEECCcccccchhhHHhccCccccccCCCCCCCCeEEecCCccccCcccCchhhhhHHHH
Confidence 55999877644 3445678877755544321 111111111111111134455543211 01 1123
Q ss_pred HHHHHHhhh-----hCCcEEEEc--CCCCCCh----hhHHHHHHHHHHcCCEEEEeccccc-cccc--cCCCCCCCCCce
Q 018231 185 DQLEKSATL-----FRPKLIVAG--ASAYARL----YDYERIRKVCNKQKAIMLADMAHIS-GLVA--AGVIPSPFEYAD 250 (359)
Q Consensus 185 e~l~~~i~~-----~~~k~v~l~--~~n~g~~----~~l~~i~~la~~~~~~vivD~a~~~-g~~~--~~~~~~~~~~~D 250 (359)
+.+++.+.. .++.++++. ...-|.+ .-++++.++|++||+++|+|++|+. |... ......+. ..|
T Consensus 207 ~~~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GRTG~~fa~E~~gv-~PD 285 (447)
T COG0160 207 EYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTGKMFAFEHFGV-EPD 285 (447)
T ss_pred HHHHHHHHhhcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCccccchhhhhcCC-CCC
Confidence 445554432 236677775 2224432 3488999999999999999999952 2221 11111111 269
Q ss_pred EEEeCCCCcCCCCC-ceEEEEeCCcchhccCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhccccchhHh
Q 018231 251 VVTTTTHKSLRGPR-GAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITFSHIH 329 (359)
Q Consensus 251 ~v~~s~~K~l~gp~-gG~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~~~~~~~~~ 329 (359)
+++++ |.+++.- -|.++.+. ++.+ +......+.++ -|..+.+|..+.|+.++++...++..
T Consensus 286 ivt~a--K~ig~G~Pl~avv~r~--------------ei~~-~~~g~~~~Tf~-GNpva~Aaa~AvL~vie~e~L~~~a~ 347 (447)
T COG0160 286 IVTLA--KSLGGGLPLSAVVGRA--------------EIMD-WPPGGHGGTFG-GNPVACAAALAVLDVIEEENLLERAA 347 (447)
T ss_pred EEEec--ccccCCCceeEEeccH--------------Hhcc-cCCcccCCCCC-cCHHHHHHHHHHHHHHHHccHHHHHH
Confidence 99999 9997633 38888887 3333 22222222332 24566677778899999888888888
Q ss_pred hhccccchhhhhcccCCCccccCCCC
Q 018231 330 VFSLHVYPAFVSNQNNSENIEEDKGR 355 (359)
Q Consensus 330 ~~~l~~~~~~~~~~~~~~~~~~~~~~ 355 (359)
+..-+...++...+....+||+++|+
T Consensus 348 ~~G~~l~~~L~~l~~~~~~IgdVRG~ 373 (447)
T COG0160 348 ELGEYLRDRLEELQEKHPLIGDVRGL 373 (447)
T ss_pred HHHHHHHHHHHHHHhhcCceeccccc
Confidence 88888888887778888899999997
No 295
>PRK02936 argD acetylornithine aminotransferase; Provisional
Probab=99.34 E-value=7.6e-11 Score=112.91 Aligned_cols=232 Identities=14% Similarity=0.106 Sum_probs=129.8
Q ss_pred cCceeeCCCC-----CCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEEC-C
Q 018231 47 KGLELIPSEN-----FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSL-S 120 (359)
Q Consensus 47 ~~i~l~~~~~-----~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~t-s 120 (359)
..+++.++.. ..+|.|.+++.+.+.+.. . ... ....+++..+.+++.+.++.+ .++++ |
T Consensus 30 ~~lD~~s~~~~~~lG~~~p~v~~a~~~~~~~~~--~-~~~------~~~~~~~~~la~~l~~~~~~~------~~~~~~s 94 (377)
T PRK02936 30 TYLDFTSGIAVCNLGHCHPTVTKAVQEQLDDIW--H-VSN------LFTNSLQEEVASLLAENSAGD------LVFFCNS 94 (377)
T ss_pred EEEECCcchhhccCCCCCHHHHHHHHHHHHhcc--c-ccc------ccCCHHHHHHHHHHHhcCCCC------EEEEeCC
Confidence 3466655542 357999999999887521 1 111 111234444556676665543 25554 5
Q ss_pred ChHHHHHHHHhh-cCCC-CeeeecCCCCCcccCccccccccceeeeeeee-E--EEecccCCC-CC--CCCHHHHHHHhh
Q 018231 121 GSPSNFQVYTAL-LKPH-DRIMALDLPHGGHLSHGYQTDTKKISAVSIFF-E--TMPYRLNES-TG--YIDYDQLEKSAT 192 (359)
Q Consensus 121 G~~a~~~~~~al-~~~G-d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~--~v~~~~~~~-~~--~~d~e~l~~~i~ 192 (359)
|+.++..++... ..+| ++|++.+..|.+....... ..+... . ..+ ..++ .. ..|++++++.+.
T Consensus 95 G~~a~~~A~~~a~~~~g~~~vi~~~~~~Hg~~~~~~~-------~~~~~~~~~~~~~--~~~~~~~~~~~d~~~l~~~~~ 165 (377)
T PRK02936 95 GAEANEAALKLARKHTGKSKIVTFEQSFHGRTFGTMS-------ATGQEKIKEGFGP--LLPGFTHVPFNDIKALKEVMN 165 (377)
T ss_pred cHHHHHHHHHHHHHhcCCCeEEEECCCcCCCcHHhhh-------ccCCccccccCCC--CCCCceEeCCCCHHHHHHhcc
Confidence 555888777743 2344 6688887555443211110 011000 0 000 0000 00 127899999997
Q ss_pred hhCCcEEEEc-CCC-CC----ChhhHHHHHHHHHHcCCEEEEeccccccccccC----CCCCCCCCceEEEeCCCCcCCC
Q 018231 193 LFRPKLIVAG-ASA-YA----RLYDYERIRKVCNKQKAIMLADMAHISGLVAAG----VIPSPFEYADVVTTTTHKSLRG 262 (359)
Q Consensus 193 ~~~~k~v~l~-~~n-~g----~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~----~~~~~~~~~D~v~~s~~K~l~g 262 (359)
+ ++++|++. ..+ .| ....+++|.++|++||+++|+|++|+ |....+ ....+. ..|++++ +|.+++
T Consensus 166 ~-~~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~-g~g~~g~~~~~~~~~~-~~di~t~--sK~l~~ 240 (377)
T PRK02936 166 E-EVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQT-GIGRTGTLFAYEQFGL-DPDIVTV--AKGLGN 240 (377)
T ss_pred C-CeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcCchhhHHHhhCC-CCcEEEE--cccccC
Confidence 6 78888886 333 33 23459999999999999999999985 322111 011110 2477654 699863
Q ss_pred -CCceEEEEeCCcchhccCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhcc
Q 018231 263 -PRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTL 322 (359)
Q Consensus 263 -p~gG~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~~ 322 (359)
.+.|+++.++ ++.+.+........+ +.+....+|..++++.+..+
T Consensus 241 G~~ig~v~~~~--------------~~~~~~~~~~~~~t~-~~~~~~~aaa~a~l~~~~~~ 286 (377)
T PRK02936 241 GIPVGAMIGKK--------------ELGTAFGPGSHGSTF-GGNPLAMAAAKEVLQVIKQP 286 (377)
T ss_pred CCccEEEEEcH--------------HHHhhccCCCCCCCC-CCCHHHHHHHHHHHHHHHhc
Confidence 3458888876 455544322111122 35667778888889887544
No 296
>PRK03715 argD acetylornithine transaminase protein; Provisional
Probab=99.30 E-value=1.4e-10 Score=111.54 Aligned_cols=233 Identities=12% Similarity=0.075 Sum_probs=126.8
Q ss_pred CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCC-hHHHHHHHHhhc---
Q 018231 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSG-SPSNFQVYTALL--- 133 (359)
Q Consensus 58 ~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG-~~a~~~~~~al~--- 133 (359)
-.|++.+++.+.+.. ...++. . ...+.+..+.+++.+..+.+ .++++++ +.|+..++....
T Consensus 53 ~~p~v~~a~~~q~~~-~~~~~~--~------~~~~~~~~la~~l~~~~~~~------~v~f~~SGseA~e~Aik~ar~~~ 117 (395)
T PRK03715 53 CNPGMVEALAAQAEK-LINPSP--A------FYNEPMAKLAGLLTQHSCFD------KVFFANSGAEANEGAIKLARKWG 117 (395)
T ss_pred CCHHHHHHHHHHHHh-cccccc--c------ccCHHHHHHHHHHhhccCCC------EEEEeCCcHHHHHHHHHHHHHHh
Confidence 368999999887764 211111 1 11223333556666554332 2555554 448887776653
Q ss_pred ---CCC-CeeeecCCCCCcccCccccccccceeeeeee-eE--EEec--ccCCCCCCCCHHHHHHHhhhhCCcEEEEcCC
Q 018231 134 ---KPH-DRIMALDLPHGGHLSHGYQTDTKKISAVSIF-FE--TMPY--RLNESTGYIDYDQLEKSATLFRPKLIVAGAS 204 (359)
Q Consensus 134 ---~~G-d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~--~v~~--~~~~~~~~~d~e~l~~~i~~~~~k~v~l~~~ 204 (359)
++| .+|+..+..|.+...-. +.+.+.. .. ..|. ... .....|++++++.+.+ ++++|++.|.
T Consensus 118 ~~~~~~r~~ii~~~~~yHG~t~~~-------~~~s~~~~~~~~~~~~~~~~~-~~~~~d~~~l~~~l~~-~~aavi~Epv 188 (395)
T PRK03715 118 RKHKNGAYEIITFDHSFHGRTLAT-------MSASGKPGWDTIFAPQVPGFP-KAELNDIASVEKLITD-KTVAVMLEPV 188 (395)
T ss_pred hccCCCCcEEEEECCCcCCChHHH-------HhhcCCcccccCCCCCCCCce-eeCCchHHHHHHHcCC-CceEEEEeCC
Confidence 123 56777765444331111 1111110 00 0000 000 0012478999998876 7888888744
Q ss_pred C--CCChhh----HHHHHHHHHHcCCEEEEeccccccccccCC----CCCCCCCceEEEeCCCCcCCCC-CceEEEEeCC
Q 018231 205 A--YARLYD----YERIRKVCNKQKAIMLADMAHISGLVAAGV----IPSPFEYADVVTTTTHKSLRGP-RGAMIFFRKG 273 (359)
Q Consensus 205 n--~g~~~~----l~~i~~la~~~~~~vivD~a~~~g~~~~~~----~~~~~~~~D~v~~s~~K~l~gp-~gG~l~~~~~ 273 (359)
+ .|...+ +++|.++|++||+++|+|++|+ |.-..+. ...+. ..|+++++ |.+++. +.|+++++++
T Consensus 189 ~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~t-G~GRtG~~~a~~~~gv-~PDi~t~g--K~lg~G~p~~av~~~~~ 264 (395)
T PRK03715 189 QGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQT-GCGRTGTLFAYELSGI-EPDIMTLG--KGIGGGVPLAALLAKAE 264 (395)
T ss_pred cCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCCCcchhhHhhcCC-CCceeeeh--hhhhCCcceEEEEEccc
Confidence 4 455444 9999999999999999999997 3211111 11111 26888876 999763 3477777774
Q ss_pred cchhccCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhccccchhHhhhccc
Q 018231 274 VKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLH 334 (359)
Q Consensus 274 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~~l~ 334 (359)
+.. +........+ +.+....++..++|+.+.++...++.++..-.
T Consensus 265 --------------i~~-~~~~~~~~T~-~g~pl~~aaala~L~~l~~~~l~~~~~~~g~~ 309 (395)
T PRK03715 265 --------------VAV-FEAGDQGGTY-NGNPLMTAVGVAVISQLLAPGFLEGVRARGEY 309 (395)
T ss_pred --------------ccc-ccCCCcCCCC-CCCHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 211 1111111122 23456677777889998866555555555433
No 297
>TIGR01885 Orn_aminotrans ornithine aminotransferase. This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.
Probab=99.30 E-value=2.7e-10 Score=110.02 Aligned_cols=225 Identities=13% Similarity=0.111 Sum_probs=124.1
Q ss_pred CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhhc----
Q 018231 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALL---- 133 (359)
Q Consensus 58 ~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al~---- 133 (359)
..|+|.+++.+.+.. +..+.+ .+ ..+...+ +.+.+++++|.+. .+++.||+.++..++....
T Consensus 54 ~~p~v~~a~~~~~~~-~~~~~~---~~-~~~~~~~----l~~~l~~~~~~~~-----~~~~~SGs~A~e~ai~~a~~~~~ 119 (401)
T TIGR01885 54 CHPKIVKALTEQAQK-LTLSSR---AF-YNDVFGE----FAEYVTKLFGYDK-----VLPMNTGAEAVETAIKLARKWGY 119 (401)
T ss_pred CCHHHHHHHHHHHHh-cccccc---cc-CCHHHHH----HHHHHHhhcCCCE-----EEEeCccHHHHHHHHHHHHHHhh
Confidence 379999999988765 311111 11 1122333 4577888887542 3555666669887777641
Q ss_pred -----CC-CCeeeecCCCCCcc-cCccccccccc--eeeeeee-eEEEecccCCCCCCCCHHHHHHHhhhh--CCcEEEE
Q 018231 134 -----KP-HDRIMALDLPHGGH-LSHGYQTDTKK--ISAVSIF-FETMPYRLNESTGYIDYDQLEKSATLF--RPKLIVA 201 (359)
Q Consensus 134 -----~~-Gd~Vl~~~~~~~~~-~~~~~~~~~~~--~~~~g~~-~~~v~~~~~~~~~~~d~e~l~~~i~~~--~~k~v~l 201 (359)
.+ .+.|+.....|.+. ..... .-... ....+.. ...+.++. .|+++|++.+++. ++.+|++
T Consensus 120 ~~~~~~~~~~~i~~~~~~yhg~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------~d~~~le~~l~~~~~~~~avi~ 192 (401)
T TIGR01885 120 KVKGIPENQAIIVSAKGNFHGRTLGAIS-MSTDPDSRTNFGPYVPGFKKIPY------NNLEALEEALEDHGPNVCAFIV 192 (401)
T ss_pred hhcCCCCCCCEEEEECCCcCcccHHHHh-CcCCcccccccCCCCCCceEeCC------CCHHHHHHHHHhcCCCEEEEEE
Confidence 23 35666666554432 11000 00000 0000000 00111112 2789999888632 4556666
Q ss_pred c-CCC-CCChhh----HHHHHHHHHHcCCEEEEeccccccccccC----CCCCCCCCceEEEeCCCCcCCCC--CceEEE
Q 018231 202 G-ASA-YARLYD----YERIRKVCNKQKAIMLADMAHISGLVAAG----VIPSPFEYADVVTTTTHKSLRGP--RGAMIF 269 (359)
Q Consensus 202 ~-~~n-~g~~~~----l~~i~~la~~~~~~vivD~a~~~g~~~~~----~~~~~~~~~D~v~~s~~K~l~gp--~gG~l~ 269 (359)
. ..+ +|...+ +++|.++|++||+++|+|++|. |.-..+ ....+ ...|++++| |.+++. +-|+++
T Consensus 193 E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~-g~g~~G~~~~~~~~~-~~~di~~~g--K~l~~g~~~ig~v~ 268 (401)
T TIGR01885 193 EPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQT-GLGRTGKLLCVDHEN-VKPDIVLLG--KALSGGVYPVSAVL 268 (401)
T ss_pred eCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-CCCccchhhHHhhcC-CCCCEEEee--ccccCCCCCcEEEE
Confidence 5 333 675554 9999999999999999999984 322111 10111 136888876 998653 237777
Q ss_pred EeCCcchhccCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhcc
Q 018231 270 FRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTL 322 (359)
Q Consensus 270 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~~ 322 (359)
.++ ++.+.+........+ +.+....++..++|+.+.++
T Consensus 269 ~~~--------------~i~~~~~~~~~~~t~-~~~p~~~~aa~a~L~~i~~~ 306 (401)
T TIGR01885 269 ADD--------------DVMLTIKPGEHGSTY-GGNPLACAVAVAALEVLEEE 306 (401)
T ss_pred EcH--------------HHHhhccCCCCCCCC-CCCHHHHHHHHHHHHHHHhc
Confidence 776 444444332222222 33566677778889888764
No 298
>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional
Probab=99.30 E-value=3.1e-10 Score=107.74 Aligned_cols=244 Identities=13% Similarity=0.131 Sum_probs=139.9
Q ss_pred CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECC-ChHHHHHHHHhh-cCC
Q 018231 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLS-GSPSNFQVYTAL-LKP 135 (359)
Q Consensus 58 ~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~ts-G~~a~~~~~~al-~~~ 135 (359)
-.|++.+++.+.+.+.. .... .+. .+...+ +.+.++++.+.+. +++++ |+.|+.+++... ..+
T Consensus 41 ~~p~v~~ai~~ql~~~~---~~~~-~~~-~~~~~~----la~~l~~~~~~~~------v~~~~SGseA~e~Alklar~~~ 105 (364)
T PRK04013 41 NHPEWVEEMSEQLEKLV---VAGP-MFE-HEEKEE----MLEELSKWVNYEY------VYMGNSGTEAVEAALKFARLYT 105 (364)
T ss_pred CCHHHHHHHHHHHHhcC---CccC-CcC-CHHHHH----HHHHHHhhcCCCE------EEEeCchHHHHHHHHHHHHHHh
Confidence 46889999988877521 1111 111 122222 4477777776542 55555 555888777655 335
Q ss_pred C-CeeeecCCCCCcccCccccccccceeeeee-----eeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCC--CC
Q 018231 136 H-DRIMALDLPHGGHLSHGYQTDTKKISAVSI-----FFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASA--YA 207 (359)
Q Consensus 136 G-d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~~~n--~g 207 (359)
| ++|+..+..|.+........-.......+. .+..++ ..|++.+++.+.+ ++++|++.|.. .|
T Consensus 106 gr~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~~~~~~~~--------~~d~~~l~~~i~~-~~aAvivEpi~g~gG 176 (364)
T PRK04013 106 GRKEIIAMTNAFHGRTMGALSATWKPKYREDFEPLVPGFKHIP--------FNDVEAAKEAITK-ETAAVIFEPIQGEGG 176 (364)
T ss_pred CCCEEEEECCccccCchhhccCCCCcccccCCCCCCCCcEEec--------CCCHHHHHHHhcC-CcEEEEEcCCcCCCC
Confidence 5 899998877666532111100000000000 011111 1278889998876 88888887433 23
Q ss_pred -Chhh---HHHHHHHHHHcCCEEEEeccccccccccCC-CCC-CCC-CceEEEeCCCCcCCCC-CceEEEEeCCcchhcc
Q 018231 208 -RLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGV-IPS-PFE-YADVVTTTTHKSLRGP-RGAMIFFRKGVKEINK 279 (359)
Q Consensus 208 -~~~~---l~~i~~la~~~~~~vivD~a~~~g~~~~~~-~~~-~~~-~~D~v~~s~~K~l~gp-~gG~l~~~~~~~~~~~ 279 (359)
...| ++++.++|++||+++|.|++|+ |. ..+. ... .+. ..|+++++ |.+++. +-|+++.+.+
T Consensus 177 ~~~~~~~yl~~lr~lc~~~gillI~DEv~t-G~-RtG~~~a~~~~gv~PDiv~~g--K~lggG~P~~a~~~~~~------ 246 (364)
T PRK04013 177 IVPAKEEFVKTLRDLTEDVGALLIADEVQS-GL-RTGKFLAIEHYKVEPDIVTMG--KGIGNGVPVSLTLTNFD------ 246 (364)
T ss_pred CcCCCHHHHHHHHHHHHHcCCEEEEechhh-cC-CCCchhHHHhcCCCCCEEEec--ccccCCceeEEEEeccc------
Confidence 2334 8999999999999999999986 33 2211 000 011 36899986 998653 2377777663
Q ss_pred CCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhccccchhHhhhccccchhhhhcccCCCccccCCCCCC
Q 018231 280 QGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSENIEEDKGRPC 357 (359)
Q Consensus 280 ~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 357 (359)
+ ... ..+.....|..+.+|..+.|+.++++....+.++. + ..+ .. .++++++|+-.
T Consensus 247 --------~----~~~-~~~~T~~gnp~~~aaa~a~l~~i~~~~l~~~~~~~-l----~~l---~~-~~v~~vRG~Gl 302 (364)
T PRK04013 247 --------V----ERG-KHGSTFGGNPLACKAVAVTLRILRRERLVEKAGEK-F----IEI---KG-ERVVTTRGRGL 302 (364)
T ss_pred --------c----cCC-CcCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHH-H----HHh---cc-CcceeeeeCcE
Confidence 1 111 11112234566777777889999988766776654 1 112 12 56888888743
No 299
>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional
Probab=99.30 E-value=2.4e-10 Score=110.56 Aligned_cols=224 Identities=15% Similarity=0.142 Sum_probs=125.7
Q ss_pred CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHhhc---
Q 018231 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALL--- 133 (359)
Q Consensus 58 ~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~al~--- 133 (359)
-.|.|.+|+.+.+......+ . .+. .+...+ +.++++++++.+ .++++++++ |+..++....
T Consensus 56 ~~p~v~~A~~~~~~~~~~~~---~-~~~-~~~~~~----la~~l~~~~~~~------~v~~~~sGseA~e~Alk~ar~~~ 120 (406)
T PRK12381 56 AHPALREALNEQASKFWHTG---N-GYT-NEPVLR----LAKKLIDATFAD------RVFFCNSGAEANEAALKLARKYA 120 (406)
T ss_pred CCHHHHHHHHHHHhhccccc---C-ccC-CHHHHH----HHHHHHhhCCCC------eEEEcCCcHHHHHHHHHHHHHHH
Confidence 47899999998876521111 1 111 121222 557777777543 266655544 8887766531
Q ss_pred -----CCCCeeeecCCCCCcccCccccccccceeeeeee-eE--EEecccCC-CCCCCCHHHHHHHhhhhCCcEEEEcCC
Q 018231 134 -----KPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIF-FE--TMPYRLNE-STGYIDYDQLEKSATLFRPKLIVAGAS 204 (359)
Q Consensus 134 -----~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~--~v~~~~~~-~~~~~d~e~l~~~i~~~~~k~v~l~~~ 204 (359)
.++.+|+..+..|.+...... .+.+.. .. ..++..+. .....|++++++.+++ ++++|++.|.
T Consensus 121 ~~~~~~~r~~ii~~~~~yHG~t~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~aaviiEPv 192 (406)
T PRK12381 121 HDRYGSHKSGIVAFKNAFHGRTLFTV-------SAGGQPKYSQDFAPLPPDIRHAAYNDLNSASALIDD-QTCAVIVEPI 192 (406)
T ss_pred hhcCCCCCCeEEEECCCcCCcchhHH-------hhcCCcccccCCCCCCCCeeEeCCCCHHHHHHhccC-CeeEEEEeCC
Confidence 245678887766555432110 011100 00 00000000 0012388999999976 7888888766
Q ss_pred C-CC-----ChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCC---CC-CceEEEeCCCCcCC-CCCceEEEEeCC
Q 018231 205 A-YA-----RLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP---FE-YADVVTTTTHKSLR-GPRGAMIFFRKG 273 (359)
Q Consensus 205 n-~g-----~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~---~~-~~D~v~~s~~K~l~-gp~gG~l~~~~~ 273 (359)
+ +| ....+++|.++|++||+++|+|++| .|....+. ... +. ..|++++ +|.++ |.+-|+++.++
T Consensus 193 ~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~-tG~gr~G~-~~~~~~~~v~pDi~t~--sK~l~gG~~ig~~~~~~- 267 (406)
T PRK12381 193 QGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQ-TGVGRTGE-LYAYMHYGVTPDVLTT--AKALGGGFPIGAMLTTE- 267 (406)
T ss_pred cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchh-hCCCCCcc-hhhhHhhCCCCCEEEe--hhhhhCCCceEEEEEcH-
Confidence 5 44 2456899999999999999999998 33322111 111 01 2577655 49985 33338888877
Q ss_pred cchhccCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhccc
Q 018231 274 VKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLI 323 (359)
Q Consensus 274 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~~~ 323 (359)
++.+.+........+ +.+....++..++|+.+.++.
T Consensus 268 -------------~~~~~~~~~~~~~t~-~~~pl~~aaa~a~l~~l~~~~ 303 (406)
T PRK12381 268 -------------KCASVMTVGTHGTTY-GGNPLASAVAGKVLELINTPE 303 (406)
T ss_pred -------------HHHhhcCCCCCCCCC-CCCHHHHHHHHHHHHHHhhcc
Confidence 555554332222222 345666777778888876543
No 300
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=99.28 E-value=4e-10 Score=109.56 Aligned_cols=260 Identities=11% Similarity=0.032 Sum_probs=139.4
Q ss_pred CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECC-ChHHHHHHHHhh---c
Q 018231 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLS-GSPSNFQVYTAL---L 133 (359)
Q Consensus 58 ~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~ts-G~~a~~~~~~al---~ 133 (359)
-.|.|.+|+.+.+.... .. ..++. .+... .+.+++.+++....+ .+++++ |+.|+.+++... .
T Consensus 92 ~hp~v~~Av~~ql~~l~---~~-~~~~~-~~~~~----~lAe~L~~~~p~~~~----~v~f~~SGsEA~e~AlklAr~~t 158 (442)
T TIGR03372 92 RNPNVIAAVENQLAKQP---LH-SQELL-DPLRA----LLAKTLAALTPGKLK----YSFFCNSGTESVEAALKLAKAYQ 158 (442)
T ss_pred CCHHHHHHHHHHHHhCC---Cc-ccccC-CHHHH----HHHHHHHHhCCCCcC----EEEEeCCchHHHHHHHHHHHHHH
Confidence 46899999998776521 11 11111 12222 255777777643322 366655 555888766533 1
Q ss_pred --CCCCeeeecCCCCCcccCccccc-----cccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhh-----hCCcEEEE
Q 018231 134 --KPHDRIMALDLPHGGHLSHGYQT-----DTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL-----FRPKLIVA 201 (359)
Q Consensus 134 --~~Gd~Vl~~~~~~~~~~~~~~~~-----~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~-----~~~k~v~l 201 (359)
+...+|+.....|.+...-.... ++....-....+..+| . .|.+.+++.+.+ .++.+|++
T Consensus 159 ~~~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p--~------~d~~~~~~~l~~~~~~~~~vAavIv 230 (442)
T TIGR03372 159 SPRGKFTFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHVA--F------GDIEAMLKALNECKKTGDDVAAIIL 230 (442)
T ss_pred hhcCCcEEEEECCCccCCCHHHhhccCCcccCCCCCCCCCCCEEeC--C------CCHHHHHHHHHHHhcCCCcEEEEEE
Confidence 13457887776555542100000 0000000000011122 1 267777776642 24566766
Q ss_pred c--CCCCCChhh----HHHHHHHHHHcCCEEEEecccc-ccccccC--CCCCCCCCceEEEeCCCCcCCCC--CceEEEE
Q 018231 202 G--ASAYARLYD----YERIRKVCNKQKAIMLADMAHI-SGLVAAG--VIPSPFEYADVVTTTTHKSLRGP--RGAMIFF 270 (359)
Q Consensus 202 ~--~~n~g~~~~----l~~i~~la~~~~~~vivD~a~~-~g~~~~~--~~~~~~~~~D~v~~s~~K~l~gp--~gG~l~~ 270 (359)
. .++-|...| ++++.++|++||+++|+|++|+ +|..... ....+. ..|+++++ |.+++. +.|++++
T Consensus 231 Epv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv-~PDivt~g--K~lg~G~~Pigavv~ 307 (442)
T TIGR03372 231 EPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGKMFACEHEGV-QPDILCLA--KALGGGVMPIGATIA 307 (442)
T ss_pred eCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCccccchhhhhcCC-CCCeeeeh--hhhcCCcccceEEEe
Confidence 5 333455555 8999999999999999999994 3322110 111111 26998865 999754 3466777
Q ss_pred eCCcchhccCCcchhhhHHHhhccccCCCC-CCCC--cHHHHHHHHHHHHHHhccccchhHhhhccccchhhhhcccCCC
Q 018231 271 RKGVKEINKQGKEVFYDYEEKINQAVFPGL-QGGP--HNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSE 347 (359)
Q Consensus 271 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~gt~--~~~~i~al~~Al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 347 (359)
++ ++.+.+... +.. .+|. |..+.+|..++|+.+.++...++.+...-+....+..-.....
T Consensus 308 ~~--------------~i~~~~~~~--~~~~~~T~~gnp~~~Aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L~~l~~~~~ 371 (442)
T TIGR03372 308 TE--------------AVFSVLFDN--PFLHTTTFGGNPLACAAALATINELLEKNLPAQAAIKGDFLLDGFQQLAAEYP 371 (442)
T ss_pred cH--------------HHHHhhhcc--CccccCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 76 444443211 111 2233 5677778888899998765556666654444433322233344
Q ss_pred -ccccCCCCCC
Q 018231 348 -NIEEDKGRPC 357 (359)
Q Consensus 348 -~~~~~~~~~~ 357 (359)
.+++++|+-+
T Consensus 372 ~~i~~vRG~Gl 382 (442)
T TIGR03372 372 DLIIEARGKGL 382 (442)
T ss_pred CceEEEecceE
Confidence 6788888743
No 301
>PRK12403 putative aminotransferase; Provisional
Probab=99.27 E-value=4.6e-10 Score=109.98 Aligned_cols=155 Identities=15% Similarity=0.090 Sum_probs=89.0
Q ss_pred HHHHHHhhh---hCCcEEEEcC--CCCCChhh----HHHHHHHHHHcCCEEEEecccc-ccccccC--CCCCCCCCceEE
Q 018231 185 DQLEKSATL---FRPKLIVAGA--SAYARLYD----YERIRKVCNKQKAIMLADMAHI-SGLVAAG--VIPSPFEYADVV 252 (359)
Q Consensus 185 e~l~~~i~~---~~~k~v~l~~--~n~g~~~~----l~~i~~la~~~~~~vivD~a~~-~g~~~~~--~~~~~~~~~D~v 252 (359)
+++++.+.+ .++.+|++.| ++.|.+.+ +++|.++|++||+++|.|++|+ +|..... ....++ ..|++
T Consensus 209 ~~le~~~~~~~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~e~~gv-~PDiv 287 (460)
T PRK12403 209 LQLEEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTGEWFAHEHFGF-EPDTL 287 (460)
T ss_pred HHHHHHHHHhCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhhhhhcCC-CCCeE
Confidence 556665532 2455677653 33455555 9999999999999999999994 3322211 111111 25999
Q ss_pred EeCCCCcCCCC--CceEEEEeCCcchhccCCcchhhhHHHhhcccc---CCCCCCCCcHHHHHHHHHHHHHHhccccchh
Q 018231 253 TTTTHKSLRGP--RGAMIFFRKGVKEINKQGKEVFYDYEEKINQAV---FPGLQGGPHNHTITGLAVALKQVCTLITFSH 327 (359)
Q Consensus 253 ~~s~~K~l~gp--~gG~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~gt~~~~~i~al~~Al~~~~~~~~~~~ 327 (359)
+++ |.++|. +-|++++++ ++.+.+.... ..+...+.|..+.+|..++|+.+.++....+
T Consensus 288 ~~g--K~lggG~~Piga~v~~~--------------~i~~~~~~~~~~~~~~~T~~gnPl~~Aaala~L~~i~~~~l~~~ 351 (460)
T PRK12403 288 SIA--KGLTSGYVPMGGLVLSK--------------RIAEALVEQGGVFAHGLTYSGHPVAAAVAIANLKALRDEGVVTR 351 (460)
T ss_pred EEc--ccccccccceEEEEECH--------------HHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhccHHHH
Confidence 865 999754 236666766 4444332110 1111122566777888888999987654555
Q ss_pred Hh-hhccccchhhhhcccCCCccccCCCCC
Q 018231 328 IH-VFSLHVYPAFVSNQNNSENIEEDKGRP 356 (359)
Q Consensus 328 ~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~ 356 (359)
.+ ...-+..............+++++|+-
T Consensus 352 ~~~~~g~~l~~~L~~l~~~~~~i~~vrG~G 381 (460)
T PRK12403 352 VKDDTGPYLQRCLREVFGDHPLVGEVQGAG 381 (460)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEeEeecc
Confidence 53 433332222211133446788888874
No 302
>KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism]
Probab=99.26 E-value=7.9e-11 Score=102.38 Aligned_cols=212 Identities=17% Similarity=0.155 Sum_probs=138.6
Q ss_pred cCCCCCCCceeEEECCChH-HHHHHHHhhcCCC-CeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCC
Q 018231 105 FRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPH-DRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYI 182 (359)
Q Consensus 105 ~g~~~~~~~~~v~~tsG~~-a~~~~~~al~~~G-d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~ 182 (359)
-+..++ +|.++.|+. .+-++++..+.|| ++|+..+ |.|.+|.-.+.+.+++++.+| .+ .++.+
T Consensus 82 kpLt~d----nic~GvGsDE~ID~iiR~~c~PGkeKIl~cP--------PtysMY~v~A~iNd~eVvkvp--l~-pdF~l 146 (375)
T KOG0633|consen 82 KPLTSD----NICVGVGSDELIDLIIRCVCDPGKEKILDCP--------PTYSMYVVDAAINDAEVVKVP--LN-PDFSL 146 (375)
T ss_pred CCCCcc----ceEEecCcHHHHHHHHhheecCCccceeecC--------CcceeEEEEeecCCceEEEec--CC-CCccc
Confidence 345554 599999999 7777999999999 8999988 666666656677787776665 55 56999
Q ss_pred CHHHHHHHhhhh-CCcEEEEc-CCC-CCChhhHHHHHHHHHHc-CCEEEEeccccc--cccc--cCCCCCCCCCceEEEe
Q 018231 183 DYDQLEKSATLF-RPKLIVAG-ASA-YARLYDYERIRKVCNKQ-KAIMLADMAHIS--GLVA--AGVIPSPFEYADVVTT 254 (359)
Q Consensus 183 d~e~l~~~i~~~-~~k~v~l~-~~n-~g~~~~l~~i~~la~~~-~~~vivD~a~~~--g~~~--~~~~~~~~~~~D~v~~ 254 (359)
|.|.+.+.+..+ ++|.++++ |.| +|.+...+.|.++.+-. |.+|++|+|..- |... .-+.+.+ -=+++.
T Consensus 147 nvdai~evl~~ds~iK~~F~tSPgNPtg~~ik~~di~KiLe~p~nglVVvDEAYidFsg~~S~~~lV~kYp---NLivlq 223 (375)
T KOG0633|consen 147 NVDAIAEVLELDSKIKCIFLTSPGNPTGSIIKEDDILKILEMPDNGLVVVDEAYIDFSGVESRMKLVKKYP---NLIVLQ 223 (375)
T ss_pred cHHHHHHHHhccccceEEEEcCCCCCCcccccHHHHHHHHhCCCCcEEEEeeeeEeeccccccchHhHhCC---ceeehh
Confidence 999999988653 68999998 777 88887788888877654 789999999631 1110 0112333 457888
Q ss_pred CCCCcCC--CCCceEEEEeCCcchhccCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHh--ccccchhHhh
Q 018231 255 TTHKSLR--GPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVC--TLITFSHIHV 330 (359)
Q Consensus 255 s~~K~l~--gp~gG~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~--~~~~~~~~~~ 330 (359)
..+|.|+ |.+-|+-++.. .+...+++...|.... .++-.+||+-+. +-..++..|.
T Consensus 224 TlSKsfGLAGiRvG~~~~~~--------------~ia~iln~~KaPYNiS------~~~s~~AL~Als~~n~kkme~~rd 283 (375)
T KOG0633|consen 224 TLSKSFGLAGIRVGYGAFPL--------------SIAEILNRAKAPYNIS------VAGSVAALAALSDSNGKKMEDVRD 283 (375)
T ss_pred hhhhhcCcceeEeecccccH--------------HHHHHHHhccCCcccc------chhHHHHHHhcCcccchHHHHHHH
Confidence 8899873 44448888777 5555555544444321 122233333333 1133444555
Q ss_pred hccccchhhhhcccCCCccccCCC
Q 018231 331 FSLHVYPAFVSNQNNSENIEEDKG 354 (359)
Q Consensus 331 ~~l~~~~~~~~~~~~~~~~~~~~~ 354 (359)
...+...+.+-++..+.++++-.|
T Consensus 284 aiv~er~RL~keLt~v~~~~~~~g 307 (375)
T KOG0633|consen 284 AIVRERERLFKELTEVPFLNDYPG 307 (375)
T ss_pred HHHHHHHHHHHHhhcCccccCCCC
Confidence 556666666666666666655433
No 303
>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=99.25 E-value=1.8e-10 Score=112.12 Aligned_cols=252 Identities=13% Similarity=0.093 Sum_probs=139.7
Q ss_pred cCceeeCCCC-----CCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCC
Q 018231 47 KGLELIPSEN-----FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSG 121 (359)
Q Consensus 47 ~~i~l~~~~~-----~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG 121 (359)
..+++.++.. ..+|.|.+++.+.+.+.. . .+....... .+++++.+++. ..+ .++++++
T Consensus 51 ~~lD~~~g~~~~~lGh~~p~i~~a~~~~~~~~~--~-----~~~~~~~~~----~la~~L~~~~~-~~~----~v~~~~s 114 (426)
T PRK00062 51 EYIDYVGSWGPMILGHAHPEVVEAVIEAAEKGL--S-----FGAPTELEV----ELAELVIELVP-SIE----MVRMVNS 114 (426)
T ss_pred EEEEcccchhhhhcCCCCHHHHHHHHHHHHhCC--c-----CCCCCHHHH----HHHHHHHHhCC-CCC----EEEEecC
Confidence 4577765431 367999999999887622 1 111112222 25577776653 122 3777766
Q ss_pred hH-HHHHHHHhh--cCCCCeeeecCCCCCcccCccccccc-----cceeeeeeee-----EEEecccCCCCCCCCHHHHH
Q 018231 122 SP-SNFQVYTAL--LKPHDRIMALDLPHGGHLSHGYQTDT-----KKISAVSIFF-----ETMPYRLNESTGYIDYDQLE 188 (359)
Q Consensus 122 ~~-a~~~~~~al--~~~Gd~Vl~~~~~~~~~~~~~~~~~~-----~~~~~~g~~~-----~~v~~~~~~~~~~~d~e~l~ 188 (359)
++ |+..++... ...+++|+..+..|.+.......... ......+... ..+.++ ..|+++++
T Consensus 115 GseA~e~Aik~a~~~~g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~d~~~l~ 188 (426)
T PRK00062 115 GTEATMSAIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSPGVPEDFAKHTLTAP------YNDLEAVE 188 (426)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEcCccCCchhhhhhccCccccccCCCCCCCCCcccccceEEcC------CCCHHHHH
Confidence 66 988777764 23467899888777665310000000 0000000000 011111 13789999
Q ss_pred HHhhh--hCCcEEEEc--CCCCCChhh----HHHHHHHHHHcCCEEEEeccccccccccCCC-CCCCC-CceEEEeCCCC
Q 018231 189 KSATL--FRPKLIVAG--ASAYARLYD----YERIRKVCNKQKAIMLADMAHISGLVAAGVI-PSPFE-YADVVTTTTHK 258 (359)
Q Consensus 189 ~~i~~--~~~k~v~l~--~~n~g~~~~----l~~i~~la~~~~~~vivD~a~~~g~~~~~~~-~~~~~-~~D~v~~s~~K 258 (359)
+.+.+ .++++|++. +++.|.+.+ +++|.++|++||+++|+|++|+ |....... ...+. ..|++++ +|
T Consensus 189 ~~i~~~~~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~-G~r~g~~~~~~~~~~~pDi~~~--gK 265 (426)
T PRK00062 189 ELFEEYGDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMT-GFRVALGGAQGYYGVTPDLTTL--GK 265 (426)
T ss_pred HHHHhCCCcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechh-ccccCCccHHHHhCCCcchHhh--hh
Confidence 88853 256677776 555776655 8999999999999999999996 43211110 00001 1466554 59
Q ss_pred cCCCC-CceEEEEeCCcchhccCCcchhhhHHHhhcccc--CCCCCCCCcHHHHHHHHHHHHHHhccccchhHhhhcccc
Q 018231 259 SLRGP-RGAMIFFRKGVKEINKQGKEVFYDYEEKINQAV--FPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHV 335 (359)
Q Consensus 259 ~l~gp-~gG~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~~l~~ 335 (359)
.+++. +.|++++++ ++.+.+.... .....-+.+....+|..++|+.+.++....+.+....+.
T Consensus 266 ~l~~G~p~ga~~~~~--------------~i~~~~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~~~~~~~~~~~~~~~ 331 (426)
T PRK00062 266 IIGGGLPVGAFGGRR--------------EIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLKLLKEPGFYEELEALTKRL 331 (426)
T ss_pred HhhCCCcceeeeEHH--------------HHHHhhccCCCceecccCcCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 88642 347777776 5555543211 111112356677788888899887764445555544333
Q ss_pred ch
Q 018231 336 YP 337 (359)
Q Consensus 336 ~~ 337 (359)
..
T Consensus 332 ~~ 333 (426)
T PRK00062 332 AE 333 (426)
T ss_pred HH
Confidence 33
No 304
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=99.24 E-value=1.4e-09 Score=105.22 Aligned_cols=223 Identities=12% Similarity=0.104 Sum_probs=123.1
Q ss_pred CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhh---c-
Q 018231 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL---L- 133 (359)
Q Consensus 58 ~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al---~- 133 (359)
-+|.|.+++.+.+.... .. . .. ...+...+ +.++++++++.+. ..++.||+.++..++... .
T Consensus 57 ~~p~v~~a~~~~~~~~~--~~-~-~~-~~~~~~~~----l~~~l~~~~~~~~-----~~~~~sGseA~e~a~klar~~~~ 122 (403)
T PRK05093 57 CHPALVKALKEQGEKLW--HI-S-NV-FTNEPALR----LAKKLIDATFAER-----VFFANSGAEANEAAFKLARRYAC 122 (403)
T ss_pred CCHHHHHHHHHHHHhcC--cc-c-Cc-cCCHHHHH----HHHHHHhhCCCCE-----EEEeCchHHHHHHHHHHHHHHHh
Confidence 57999999998876521 11 1 11 11122222 5577777776532 355555666888777643 1
Q ss_pred ----CCCCeeeecCCCCCcccCccccc-----cccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCC
Q 018231 134 ----KPHDRIMALDLPHGGHLSHGYQT-----DTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGAS 204 (359)
Q Consensus 134 ----~~Gd~Vl~~~~~~~~~~~~~~~~-----~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~~~ 204 (359)
...++|+..+..|.+........ +..+.......+..+ +. .|++++++.+.+ ++++|+++|.
T Consensus 123 ~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------~d~~~l~~~l~~-~~aaiiiep~ 193 (403)
T PRK05093 123 DRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHV--PF------NDLAAVKAVIDD-HTCAVVVEPI 193 (403)
T ss_pred hcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCCCCCCCcEEe--CC------CCHHHHHHHhcC-CeEEEEEecc
Confidence 12356776665544432100000 000000000111111 12 288999999876 7999998866
Q ss_pred C-CC-Ch----hhHHHHHHHHHHcCCEEEEeccccccccccCCCCCC---CC-CceEEEeCCCCcCC-CCCceEEEEeCC
Q 018231 205 A-YA-RL----YDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP---FE-YADVVTTTTHKSLR-GPRGAMIFFRKG 273 (359)
Q Consensus 205 n-~g-~~----~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~---~~-~~D~v~~s~~K~l~-gp~gG~l~~~~~ 273 (359)
| +| .. ..+++|.++|++||+++|+|++|+ |....+. ... +. ..|+.++ +|.++ |.+.|+++.++
T Consensus 194 ~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~g~~g~-~~~~~~~~~~pdi~s~--sK~l~~G~rig~vv~~~- 268 (403)
T PRK05093 194 QGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQT-GMGRTGD-LFAYMHYGVTPDILTS--AKALGGGFPIGAMLTTA- 268 (403)
T ss_pred cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-CCCCCcc-chhhhhcCCCCCEEEe--cccccCCcceEEEEEcH-
Confidence 6 44 22 348999999999999999999986 4322221 111 11 2566655 59885 33348888877
Q ss_pred cchhccCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhcc
Q 018231 274 VKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTL 322 (359)
Q Consensus 274 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~~ 322 (359)
++.+.+........++ .+.+..++..++|+.+.++
T Consensus 269 -------------~i~~~l~~~~~~~t~~-~~~~~~~aa~a~L~~~~~~ 303 (403)
T PRK05093 269 -------------EIASHFKVGTHGSTYG-GNPLACAVAEAVFDIINTP 303 (403)
T ss_pred -------------HHHhhcCCCCCCCCCC-CCHHHHHHHHHHHHHHhhc
Confidence 5555443322222233 3455566667778877543
No 305
>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
Probab=99.23 E-value=1.2e-09 Score=103.04 Aligned_cols=238 Identities=15% Similarity=0.096 Sum_probs=143.8
Q ss_pred cCceeeCCCCC-----CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCC
Q 018231 47 KGLELIPSENF-----TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSG 121 (359)
Q Consensus 47 ~~i~l~~~~~~-----~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG 121 (359)
..|++.-+-.+ -+|.|.+|+.+.+.+..+-|.|. ..+++ +.+.+.+++..-. .|.+++.
T Consensus 54 ~YIDy~~~~Gp~ilGH~~p~V~~Av~~~l~~G~~fg~Pt---------e~Ei~--~Aell~~~~p~~e-----~vrfvnS 117 (432)
T COG0001 54 EYIDYVLGWGPLILGHAHPAVVEAVQEQLERGLSFGAPT---------ELEVE--LAELLIERVPSIE-----KVRFVNS 117 (432)
T ss_pred EeeehhccCcccccCCCCHHHHHHHHHHHHhcCCCCCCC---------HHHHH--HHHHHHHhcCccc-----EEEEecc
Confidence 34666554444 26889999999988754333322 23343 6688888887622 2777766
Q ss_pred hH-HHHHHHHhh--cCCCCeeeecCCCCCcccCcccccccccee------eeeee----eEEEecccCCCCCCCCHHHHH
Q 018231 122 SP-SNFQVYTAL--LKPHDRIMALDLPHGGHLSHGYQTDTKKIS------AVSIF----FETMPYRLNESTGYIDYDQLE 188 (359)
Q Consensus 122 ~~-a~~~~~~al--~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~------~~g~~----~~~v~~~~~~~~~~~d~e~l~ 188 (359)
+| |.+.+++.- ....|+|+..+-.|.++......-...++. ..|.. -..+.++.+ |++.++
T Consensus 118 GTEAtmsAiRlARa~TgR~kIikF~G~YHG~~D~~lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~yN------D~~al~ 191 (432)
T COG0001 118 GTEATMSAIRLARAYTGRDKIIKFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVPADVAKHTLVLPYN------DLEALE 191 (432)
T ss_pred hhHHHHHHHHHHHHhhCCCeEEEEcCCCCCCccHHHhhcCcCcccCCCCCCCCCChhhhccEEEecCC------CHHHHH
Confidence 66 777666543 456689999988887775433321111110 11110 011222334 899999
Q ss_pred HHhhhh--CCcEEEEc--CCCCCChh----hHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCC-CceEEEeCCCCc
Q 018231 189 KSATLF--RPKLIVAG--ASAYARLY----DYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE-YADVVTTTTHKS 259 (359)
Q Consensus 189 ~~i~~~--~~k~v~l~--~~n~g~~~----~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~-~~D~v~~s~~K~ 259 (359)
+.+.+. +..+|++. ..|.|.+. -++.|.++|++||+++|.|++...-.+..+-...-+. ..|+.+++ |.
T Consensus 192 ~~~~~~g~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGFR~~~gGaq~~~gi~PDlttlG--Ki 269 (432)
T COG0001 192 EAFEEYGDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITGFRVALGGAQGYYGVEPDLTTLG--KI 269 (432)
T ss_pred HHHHHcCCcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchhhcccCCcccccccCcCcchhhhh--hh
Confidence 999864 56677776 55666443 3889999999999999999997543333211111111 26888877 98
Q ss_pred CCCCCc-eEEEEeCCcchhccCCcchhhhHHHhhccccCCCCCCC--CcHHHHHHHHHHHHHHhcc
Q 018231 260 LRGPRG-AMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGG--PHNHTITGLAVALKQVCTL 322 (359)
Q Consensus 260 l~gp~g-G~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gt--~~~~~i~al~~Al~~~~~~ 322 (359)
++|.-. |++-.++ ++.+.+...-.....|| -|..+++|-.++++.+.++
T Consensus 270 IGGGlP~ga~gGr~--------------eiM~~~~p~g~vyqaGT~sgnplamaAG~atl~~l~~~ 321 (432)
T COG0001 270 IGGGLPIGAFGGRA--------------EIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLEELMTE 321 (432)
T ss_pred hcCCcceeeeccHH--------------HHHhhhCCCCCccccCCCCCcHHHHHHHHHHHHHHHhc
Confidence 865444 7777777 44444333211111233 3567788888889888874
No 306
>PLN02624 ornithine-delta-aminotransferase
Probab=99.23 E-value=7.7e-10 Score=108.88 Aligned_cols=220 Identities=16% Similarity=0.082 Sum_probs=120.2
Q ss_pred cHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhhcC----
Q 018231 59 SVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLK---- 134 (359)
Q Consensus 59 ~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al~~---- 134 (359)
.|.|.+++.+.+.. +.... . .+.. +...+ +.+.++++++.+. .++.+||+.++..++.....
T Consensus 93 ~p~v~~ai~~ql~~-~~~~~--~-~~~~-~~~~~----la~~L~~~~~~~~-----~~f~~SGseA~e~AlklAr~~~~~ 158 (474)
T PLN02624 93 HPKIIKALTEQAEK-LTLSS--R-AFYN-DKFPE----FAEYLTSMFGYDM-----VLPMNTGAEGVETAIKLARKWGYE 158 (474)
T ss_pred CHHHHHHHHHHHHh-cCCcc--c-ccCC-HHHHH----HHHHHHhhcCCCe-----EEEeCChHHHHHHHHHHHHHHHHh
Confidence 79999999998875 31111 1 1111 22222 5577888887542 24445566688876653211
Q ss_pred -----CCC-eeeecCCCCCcccCccccc-----cccc--eeeeeeeeEEEecccCCCCCCCCHHHHHHHhhh--hCCcEE
Q 018231 135 -----PHD-RIMALDLPHGGHLSHGYQT-----DTKK--ISAVSIFFETMPYRLNESTGYIDYDQLEKSATL--FRPKLI 199 (359)
Q Consensus 135 -----~Gd-~Vl~~~~~~~~~~~~~~~~-----~~~~--~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~--~~~k~v 199 (359)
++. .|+.....|.+...-...+ .... ....+ +..++ . .|++.+++.++. .++++|
T Consensus 159 ~~g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~--~~~~~--~------~d~~~l~~~l~~~~~~iaai 228 (474)
T PLN02624 159 KKGIPKNEAIIVSCCGCFHGRTLAAISMSCDNEATRGFGPLLPG--HLKVD--F------GDLDALEKIFEEDGDRIAAF 228 (474)
T ss_pred hcCCCCCCcEEEEECCCcCCCCHHHhhcCCCccccccCCCCCCC--ceEeC--C------CCHHHHHHHHHhCCCCEEEE
Confidence 133 3555443333321000000 0000 00001 11121 1 278999988863 256778
Q ss_pred EEc-CCC-CCChhh----HHHHHHHHHHcCCEEEEecccc-cccc----ccCCCCCCCCCceEEEeCCCCcCCCC--Cce
Q 018231 200 VAG-ASA-YARLYD----YERIRKVCNKQKAIMLADMAHI-SGLV----AAGVIPSPFEYADVVTTTTHKSLRGP--RGA 266 (359)
Q Consensus 200 ~l~-~~n-~g~~~~----l~~i~~la~~~~~~vivD~a~~-~g~~----~~~~~~~~~~~~D~v~~s~~K~l~gp--~gG 266 (359)
++. ..+ +|.+.| +++|.++|++||+++|+|++|. +|.. ..+.... ..|++++| |.++++ +.|
T Consensus 229 iiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~GrtG~~~a~~~~~i---~pDiv~ls--K~lggG~~pig 303 (474)
T PLN02624 229 LFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGKMLACDWEEV---RPDVVILG--KALGGGVIPVS 303 (474)
T ss_pred EECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcCcCcchhhHHhcCC---CCCEEEec--ccccCCCCcce
Confidence 887 333 676555 9999999999999999999996 2211 1111111 26888875 988654 347
Q ss_pred EEEEeCCcchhccCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhcc
Q 018231 267 MIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTL 322 (359)
Q Consensus 267 ~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~~ 322 (359)
++++++ ++.+.+.+.. .+...+.+....++..++++.+.++
T Consensus 304 av~~~~--------------~i~~~~~~~~-~~~T~~g~pl~~aaa~aaLe~l~~~ 344 (474)
T PLN02624 304 AVLADK--------------DVMLCIKPGE-HGSTFGGNPLASAVAMAALQVVQDE 344 (474)
T ss_pred eeeecH--------------HHHhHhccCC-cCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 887776 4433333221 1122234556677777889887754
No 307
>PRK04612 argD acetylornithine transaminase protein; Provisional
Probab=99.21 E-value=1.6e-09 Score=104.61 Aligned_cols=260 Identities=13% Similarity=0.098 Sum_probs=137.6
Q ss_pred CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHhhc---
Q 018231 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALL--- 133 (359)
Q Consensus 58 ~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~al~--- 133 (359)
-.|.|.+++.+.+.... +.... +.. +... .+.+++.+..... + .+.++++++ |+..++....
T Consensus 57 ~~p~v~~ai~~q~~~~~---~~~~~-~~~-~~~~----~la~~L~~~~~~~-~----~v~f~~sGseA~e~AlklAr~~~ 122 (408)
T PRK04612 57 NDPDLVAALTEQAGKLW---HTSNV-FYS-APPL----KLAEELVTASRFA-E----KVFLCNSGTEANEAAIKLVRKWA 122 (408)
T ss_pred CCHHHHHHHHHHHHhcc---ccccc-cCC-HHHH----HHHHHHHhhCCCC-C----EEEEcCchHHHHHHHHHHHHHHH
Confidence 47899999988776521 11110 111 1111 2446666665322 2 367765555 8887665431
Q ss_pred ---C--C-CCeeeecCCCCCcccCccc-----cccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc
Q 018231 134 ---K--P-HDRIMALDLPHGGHLSHGY-----QTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG 202 (359)
Q Consensus 134 ---~--~-Gd~Vl~~~~~~~~~~~~~~-----~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~ 202 (359)
. + ..+|+.....|.+...... +.++....-.-..+..++ ..|++.+++.+.+.++.++++.
T Consensus 123 ~~~g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~--------~~d~~~l~~~~~~~~~aavi~e 194 (408)
T PRK04612 123 SSQGRPADKRVIVTFRGSFHGRTLAAVTATAQPKYQEGYEPLPGGFRYVD--------FNDVEALEAAMAGGDVAAVMLE 194 (408)
T ss_pred HhhCCCCCCcEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCCceEcC--------CCCHHHHHHhhCCCCEEEEEEC
Confidence 1 1 2468877765555421100 000000000000011111 2378999988865355666666
Q ss_pred CCC-CC-Chh----hHHHHHHHHHHcCCEEEEeccccccccccC-CC-CCCCC-CceEEEeCCCCcCCCC-CceEEEEeC
Q 018231 203 ASA-YA-RLY----DYERIRKVCNKQKAIMLADMAHISGLVAAG-VI-PSPFE-YADVVTTTTHKSLRGP-RGAMIFFRK 272 (359)
Q Consensus 203 ~~n-~g-~~~----~l~~i~~la~~~~~~vivD~a~~~g~~~~~-~~-~~~~~-~~D~v~~s~~K~l~gp-~gG~l~~~~ 272 (359)
|.+ +| ... -+++|.++|++||+++|+|++|+ |.-..+ .. ..... -.|++++| |.+++. +-|++++++
T Consensus 195 P~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g~gr~G~~~a~~~~~~~pdi~t~~--K~l~~G~piga~~~~~ 271 (408)
T PRK04612 195 PIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQC-GMGRTGTLFAHWQEQVTPDIVTLA--KALGGGFPIGAMLAGP 271 (408)
T ss_pred CccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcCCchhhhhhcCCCCCEEEEc--chhcCCCceEEEEECH
Confidence 655 44 222 38899999999999999999986 221111 00 00001 24777665 998642 337777776
Q ss_pred CcchhccCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhccccchhHhhhccccchhhhhcccCCCccccC
Q 018231 273 GVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSENIEED 352 (359)
Q Consensus 273 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 352 (359)
++.+.+........+ +.+....++..++|+.+.++...++.++..-+.......-......++++
T Consensus 272 --------------~~~~~~~~~~~~~t~-~~~p~~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~l~~l~~~~~~i~~v 336 (408)
T PRK04612 272 --------------KVAETMQFGAHGTTF-GGNPLAAAVARVALRKLASPQIAANVARQSAALRAGLEALNAEFGVFAQV 336 (408)
T ss_pred --------------HHHhhhcCCCcCCCC-CCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCCeeee
Confidence 444444332222223 34567778888889998876555555555433333222213334678888
Q ss_pred CCCCC
Q 018231 353 KGRPC 357 (359)
Q Consensus 353 ~~~~~ 357 (359)
+|+..
T Consensus 337 rg~Gl 341 (408)
T PRK04612 337 RGRGL 341 (408)
T ss_pred eccce
Confidence 88764
No 308
>PLN02760 4-aminobutyrate:pyruvate transaminase
Probab=99.20 E-value=1.4e-09 Score=107.39 Aligned_cols=154 Identities=17% Similarity=0.094 Sum_probs=92.5
Q ss_pred HHHHHHhhh---hCCcEEEEcCC--CCCChhh----HHHHHHHHHHcCCEEEEeccc-cccccccC--CCCCCCCCceEE
Q 018231 185 DQLEKSATL---FRPKLIVAGAS--AYARLYD----YERIRKVCNKQKAIMLADMAH-ISGLVAAG--VIPSPFEYADVV 252 (359)
Q Consensus 185 e~l~~~i~~---~~~k~v~l~~~--n~g~~~~----l~~i~~la~~~~~~vivD~a~-~~g~~~~~--~~~~~~~~~D~v 252 (359)
+++++.+.. .++.+|++.|- +.|.+.| +++|.++|++||+++|+|++| ++|..... ....+. ..|++
T Consensus 247 ~~le~~l~~~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~~~a~e~~gv-~PDiv 325 (504)
T PLN02760 247 DNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGTMFGCDKYNI-KPDLV 325 (504)
T ss_pred HHHHHHHHhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccchhhHHHhcCC-CCcEE
Confidence 456666642 24556766533 3455555 999999999999999999999 45554321 111111 26998
Q ss_pred EeCCCCcCCCC--CceEEEEeCCcchhccCCcchhhhHHHhhccc-------cCCCCCCCCcHHHHHHHHHHHHHHhccc
Q 018231 253 TTTTHKSLRGP--RGAMIFFRKGVKEINKQGKEVFYDYEEKINQA-------VFPGLQGGPHNHTITGLAVALKQVCTLI 323 (359)
Q Consensus 253 ~~s~~K~l~gp--~gG~l~~~~~~~~~~~~g~~~~~~~~~~~~~~-------~~~~~~gt~~~~~i~al~~Al~~~~~~~ 323 (359)
+++ |.++|. +.|++++++ ++.+.+... .....++ -|..+.+|..++|+.+.++.
T Consensus 326 tlg--K~lggG~~PigAv~~~~--------------~i~d~~~~~~~~~~~~~h~~T~~-gnPl~~Aaala~Le~i~~~~ 388 (504)
T PLN02760 326 SLA--KALSSAYMPIGAVLVSP--------------EISDVIHSQSNKLGSFAHGFTYS-GHPVSCAVALEALKIYKERN 388 (504)
T ss_pred Eec--ccccCCccccceEeecH--------------HHHhhhhcccccccCcccCCCCC-CCHHHHHHHHHHHHHHHhCC
Confidence 887 999763 346677777 444433211 0112233 35667777778899998775
Q ss_pred cchhHhhhccccchhhhhcccCCCccccCCCCCC
Q 018231 324 TFSHIHVFSLHVYPAFVSNQNNSENIEEDKGRPC 357 (359)
Q Consensus 324 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 357 (359)
...+.++..-+...... .+....++++++|+..
T Consensus 389 l~~~~~~~g~~l~~~L~-~l~~~~~v~~vrG~Gl 421 (504)
T PLN02760 389 IPEHVNKIAPRFQDGIK-AFSGSPIIGEIRGTGL 421 (504)
T ss_pred HHHHHHHHHHHHHHHHH-HHhcCCCeeeEEeCce
Confidence 55666555433332222 1233467788888754
No 309
>KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism]
Probab=99.19 E-value=6e-11 Score=105.32 Aligned_cols=262 Identities=12% Similarity=0.125 Sum_probs=163.6
Q ss_pred CCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChHHHHH-HHHhhcCC
Q 018231 57 FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQ-VYTALLKP 135 (359)
Q Consensus 57 ~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~-~~~al~~~ 135 (359)
.+|..+.+.+.+.+..+.--+ ...++-+...+. ...+-+-..++.+.|+..++ |.+.+.-++|+. ++.++.+|
T Consensus 78 LmPK~t~~~~~~eLDkWak~a-v~gH~~GkvPW~-~~De~il~l~~~iVGA~e~E----vavmNsLTvNlh~Ll~sFyKP 151 (465)
T KOG3846|consen 78 LMPKSTRNSINAELDKWAKCA-VEGHFKGKVPWV-SIDEPILPLLAPIVGAQENE----VAVMNSLTVNLHSLLISFYKP 151 (465)
T ss_pred cCchhhHhHHHHHHHHHHhhh-hhccccccccee-ecchhhhhhhhhhccCCchh----hhhHhhhhhHHHHHHHHhcCC
Confidence 467888887777666521001 000111111111 01112447788999997754 888888885554 56677776
Q ss_pred CC---eeeecCCCCCcccCccccccccceeeeeeeeEEEecccCC--CCCCCCHHHHHHHhhhhC--CcEEEEc-CCC-C
Q 018231 136 HD---RIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNE--STGYIDYDQLEKSATLFR--PKLIVAG-ASA-Y 206 (359)
Q Consensus 136 Gd---~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~--~~~~~d~e~l~~~i~~~~--~k~v~l~-~~n-~ 206 (359)
-. +|+.-. .++.+-.|..+. .+.+.|+.+...-..+.+ ....+..+++.+.|.... ..+|+++ ..- |
T Consensus 152 TekR~KILlE~---kaFPSDhYAies-Q~~lhG~~~e~sm~~iePREGEetlRteDILd~IEkngDeiA~v~fSGvqyYT 227 (465)
T KOG3846|consen 152 TEKRFKILLEK---KAFPSDHYAIES-QCKLHGISPENSMIQIEPREGEETLRTEDILDTIEKNGDEIALVCFSGVQYYT 227 (465)
T ss_pred cchhhhhhhcc---CCCCchHHHHHh-hhhhcCCChHHheEEecccccccchhHHHHHHHHHhcCCeEEEEEeecceeec
Confidence 54 466433 444444443333 345556554322222332 233677788888886522 3344444 333 7
Q ss_pred CChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEeCCCCcCCC-CCc-eEEEEeCCc----chhccC
Q 018231 207 ARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRG-PRG-AMIFFRKGV----KEINKQ 280 (359)
Q Consensus 207 g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~g-p~g-G~l~~~~~~----~~~~~~ 280 (359)
|...++.+|...-+..|++|=.|-||++|-++..++.|+ +|+.|.+++|.+++ +.| |.+++..+. .+++.|
T Consensus 228 GQ~Fdi~aIT~Agq~kgc~VGfDLAHAvgNVpL~LHdWg---VDFACWCSYKYlnaGaGgIgGlFvHekh~~~~~prl~G 304 (465)
T KOG3846|consen 228 GQYFDIGAITFAGQFKGCLVGFDLAHAVGNVPLQLHDWG---VDFACWCSYKYLNAGAGGIGGLFVHEKHTKESLPRLAG 304 (465)
T ss_pred ccccchhhhhhcccCCCcEechhhhhhhcCCceEEeecC---CceEEEeeecccccCCCccceeeeehhhhcchhhHHhh
Confidence 899999999977777899999999999999999888888 99999999999864 444 778887654 344555
Q ss_pred Ccch----hhhHHHhhccccCCCC----CCCCcHHHHHHHHHHHHHHhccccchhHhhhccc
Q 018231 281 GKEV----FYDYEEKINQAVFPGL----QGGPHNHTITGLAVALKQVCTLITFSHIHVFSLH 334 (359)
Q Consensus 281 g~~~----~~~~~~~~~~~~~~~~----~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~~l~ 334 (359)
+++- .+.+.+.+. ..||. ..+|++..+.|+..+|+.+.+ ..+++.|..++-
T Consensus 305 Wwgh~~s~RF~Mdnvl~--lipGa~GfRiSNPpi~~v~al~~SLe~F~q-~~~~~lRkrS~l 363 (465)
T KOG3846|consen 305 WWGHDPSKRFQMDNVLE--LIPGALGFRISNPPIIDVVALRSSLELFAQ-FNINELRKRSLL 363 (465)
T ss_pred hccCCcchhhhhccccc--cCccccccccCCCcHhHHHHHHhhHHHHHH-hhHHHHhhhhhh
Confidence 4432 112222221 22332 489999999999999988775 567777777553
No 310
>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]
Probab=99.18 E-value=1e-09 Score=97.26 Aligned_cols=199 Identities=20% Similarity=0.259 Sum_probs=127.1
Q ss_pred HHHHHHHHhhhhccCCCCCCCCcccCCc-hhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhhcCCCCe
Q 018231 60 VSVMQAVGSVMTNKYSEGYPGARYYGGN-EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDR 138 (359)
Q Consensus 60 ~~v~~al~~~~~~~~~~g~~~~~~~~~~-~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al~~~Gd~ 138 (359)
..|++|..+.-.... ...++..|+.. .+.+.|+ +-+++.||++..- +...+.||+.|+..++.++++|||+
T Consensus 38 ~kVL~AF~~~rvs~~--hf~~stGYGydD~GRdtLe----~vyA~vf~aE~a~--VRpq~isGTHAI~~aLfg~LRpgDe 109 (416)
T COG4100 38 KKVLEAFRHHRVSES--HFTGSTGYGYDDLGRDTLE----RVYAQVFGAEAAL--VRPQIISGTHAIACALFGILRPGDE 109 (416)
T ss_pred HHHHHHHHhcccchh--ccCCCCCCCccccchhHHH----HHHHHHhccccce--eeeeeecchhHHHHHHHhccCCCCe
Confidence 567777765322110 12233334432 2355555 7789999998765 6788899999888899999999999
Q ss_pred eeecCCCCCcccCc--ccccccc-ceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCC-CC-----Ch
Q 018231 139 IMALDLPHGGHLSH--GYQTDTK-KISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASA-YA-----RL 209 (359)
Q Consensus 139 Vl~~~~~~~~~~~~--~~~~~~~-~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~~~n-~g-----~~ 209 (359)
.+...-.-...+.. +..-... ...-.|..++.+++ . .++.+|++.+...+++ +||+|.+.-|- ++ .+
T Consensus 110 ll~i~G~PYDTLeevIG~rg~~~gSL~dfgi~Y~~v~L--t-~~gkiD~~~v~~~i~~-~tkli~IQRS~GY~~RpS~~I 185 (416)
T COG4100 110 LLYITGSPYDTLEEVIGLRGEGQGSLKDFGIKYKAVPL--T-ADGKIDIQAVKTAISD-RTKLIGIQRSKGYAWRPSLSI 185 (416)
T ss_pred EEEecCCcchhHHHHhccCCCCcccHHHhCcceeeccc--c-cCCcccHHHHHHhcCc-cceEEEEEeccCcCCCCcccH
Confidence 98664211111000 0000000 11223455666654 3 4589999999999998 99999997332 43 55
Q ss_pred hhHHHHHHHHHHc--CCEEEEeccccccccccCCCCCCCC-CceEEEeCCCCcCCCC---CceEEEEeCCc
Q 018231 210 YDYERIRKVCNKQ--KAIMLADMAHISGLVAAGVIPSPFE-YADVVTTTTHKSLRGP---RGAMIFFRKGV 274 (359)
Q Consensus 210 ~~l~~i~~la~~~--~~~vivD~a~~~g~~~~~~~~~~~~-~~D~v~~s~~K~l~gp---~gG~l~~~~~~ 274 (359)
.+++++.++.++. ++++++|.+.. -+.-.. .|.. |+|++.+|.-|+-+|. .||++..+.++
T Consensus 186 ~eI~~~i~~vk~inpn~ivFVDNCYG--EFvE~~--EPt~vGaDliAGSLIKNpGGgiaktGGYiaGk~~~ 252 (416)
T COG4100 186 AEIEEMITFVKEINPNVIVFVDNCYG--EFVEEK--EPTHVGADLIAGSLIKNPGGGIAKTGGYIAGKAEL 252 (416)
T ss_pred HHHHHHHHHHHhcCCCEEEEEeccch--hhhhcc--CccccchhhhccceeeCCCCceeeccceeechHHH
Confidence 6778888888775 78999999853 222211 2222 5999999999987553 34899888875
No 311
>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional
Probab=99.18 E-value=1.7e-09 Score=105.79 Aligned_cols=260 Identities=10% Similarity=0.041 Sum_probs=137.2
Q ss_pred CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHhh--cC
Q 018231 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTAL--LK 134 (359)
Q Consensus 58 ~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~al--~~ 134 (359)
-+|.|.+|+.+.+.... .. ..++. .+. ...+.+++.+++....+ .+.|+++++ |+..++... ..
T Consensus 99 ~~p~v~~Ai~~ql~~l~---~~-~~~~~-~~~----~~~lae~L~~~~p~~~~----~v~f~~SGsEAve~AlklAr~~t 165 (459)
T PRK11522 99 RNPVVVSAVQNQLAKQP---LH-SQELL-DPL----RAMLAKTLAALTPGKLK----YSFFCNSGTESVEAALKLAKAYQ 165 (459)
T ss_pred CCHHHHHHHHHHHhhCc---cc-ccccC-CHH----HHHHHHHHHHhCCCCCC----EEEEeCCchHHHHHHHHHHHHHh
Confidence 46899999998776421 11 11111 121 22245677776543222 367765555 888766543 11
Q ss_pred --CC-CeeeecCCCCCcccCcccc-----ccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhh-----hCCcEEEE
Q 018231 135 --PH-DRIMALDLPHGGHLSHGYQ-----TDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL-----FRPKLIVA 201 (359)
Q Consensus 135 --~G-d~Vl~~~~~~~~~~~~~~~-----~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~-----~~~k~v~l 201 (359)
+| .+|+.....|.+...-... .++....-..-.+..+| ..|.+++++.+.. .++.+|++
T Consensus 166 ~~~gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~--------~~d~~~l~~~l~~~~~~~~~iAavIv 237 (459)
T PRK11522 166 SPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVP--------FGNIEAMRTALSECKKTGDDVAAVIL 237 (459)
T ss_pred ccCCCcEEEEecCCCCCCcHHHhhhcCCcccccCCCCCCCCCcccC--------CCCHHHHHHHHHHhhccCCcEEEEEE
Confidence 23 3577776555544210000 00000000000011111 1277888887752 24556666
Q ss_pred c--CCCCCChhh----HHHHHHHHHHcCCEEEEecccc-ccccccC--CCCCCCCCceEEEeCCCCcCCCC--CceEEEE
Q 018231 202 G--ASAYARLYD----YERIRKVCNKQKAIMLADMAHI-SGLVAAG--VIPSPFEYADVVTTTTHKSLRGP--RGAMIFF 270 (359)
Q Consensus 202 ~--~~n~g~~~~----l~~i~~la~~~~~~vivD~a~~-~g~~~~~--~~~~~~~~~D~v~~s~~K~l~gp--~gG~l~~ 270 (359)
. .++.|.+.| ++++.++|++||+++|+|++|+ +|..... ....+. ..|+++++ |.|++. +-|++++
T Consensus 238 Epv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv-~PDivt~g--K~lggG~~Pigav~~ 314 (459)
T PRK11522 238 EPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMFACEHENV-QPDILCLA--KALGGGVMPIGATIA 314 (459)
T ss_pred ecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccchhhhhhccCC-CCCEEEec--hhhhCCCccceeEEE
Confidence 5 333555555 8999999999999999999995 2222110 111111 25888776 999763 3466666
Q ss_pred eCCcchhccCCcchhhhHHHhhccccCCCC-CCCC--cHHHHHHHHHHHHHHhccccchhHhhhccccchhhhhcccCCC
Q 018231 271 RKGVKEINKQGKEVFYDYEEKINQAVFPGL-QGGP--HNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSE 347 (359)
Q Consensus 271 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~gt~--~~~~i~al~~Al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 347 (359)
++ ++.+.+... +.. .+|. |..+.+|..++|+.+.++...++.+...-+.......-.....
T Consensus 315 ~~--------------~i~~~~~~~--~~~~~~T~~gnp~~~Aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~ 378 (459)
T PRK11522 315 TE--------------EVFSVLFDN--PFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDYLLDGFRQLAREYP 378 (459)
T ss_pred cH--------------HHHHHhccC--CcccCCCCCCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 65 333333211 111 2333 6677778888899998876566666655444333321122333
Q ss_pred -ccccCCCCCC
Q 018231 348 -NIEEDKGRPC 357 (359)
Q Consensus 348 -~~~~~~~~~~ 357 (359)
.+++++|+.+
T Consensus 379 ~~i~~VrG~Gl 389 (459)
T PRK11522 379 DLVQEARGKGM 389 (459)
T ss_pred CceeeEEecee
Confidence 5688888754
No 312
>KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism]
Probab=99.17 E-value=6.6e-10 Score=101.75 Aligned_cols=197 Identities=16% Similarity=0.179 Sum_probs=130.0
Q ss_pred CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHhhc-CC
Q 018231 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALL-KP 135 (359)
Q Consensus 58 ~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~al~-~~ 135 (359)
.|..+++.....+...- |..++ |..+.++.-+++.+.+.+.++=|.+.+ | .+|.+|+|++ +...++.-++ .+
T Consensus 87 fp~Dai~RA~~~L~~~g--Gs~Ga--YS~SqGv~~vR~~VA~~I~rRDG~p~~-p-~dI~LT~GAS~ai~~il~l~~~~~ 160 (475)
T KOG0258|consen 87 FPTDAIKRAKRILNDCG--GSLGA--YSDSQGVPGVRKHVAEFIERRDGIPAD-P-EDIFLTTGASPAIRSILSLLIAGK 160 (475)
T ss_pred CCHHHHHHHHHHHHhcC--Ccccc--cccccCChhHHHHHHHHHHhccCCCCC-H-HHeeecCCCcHHHHHHHHHHhcCC
Confidence 45566666566665422 22222 455577788887788888888884222 2 4699999999 7665666663 57
Q ss_pred CCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCC-CCCCCCHHHHHHHhhhh----CCcEE-EEcCCC-CC-
Q 018231 136 HDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNE-STGYIDYDQLEKSATLF----RPKLI-VAGASA-YA- 207 (359)
Q Consensus 136 Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~-~~~~~d~e~l~~~i~~~----~~k~v-~l~~~n-~g- 207 (359)
+|.|+++- |-|++|...+...|... |+|-+++ .+|.+|.++|++.+++. +++++ +++|-| ||
T Consensus 161 ~~GvliPi--------PQYPLYsAti~l~~~~~--v~YyLdEe~~W~ld~~el~~~~~eA~k~i~~r~lvvINPGNPTGq 230 (475)
T KOG0258|consen 161 KTGVLIPI--------PQYPLYSATISLLGGTQ--VPYYLDEESNWSLDVAELERSVDEARKGINPRALVVINPGNPTGQ 230 (475)
T ss_pred CCceEeec--------CCCchhHHHHHHhCCcc--cceeeccccCCCCCHHHHHHHHHHHhccCCceEEEEECCCCccch
Confidence 89999998 67777776666666444 6665664 47899999999887653 45554 556888 88
Q ss_pred --ChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCC-----------CCC-Cce-EEEeCCCCcC---CCCCceEEE
Q 018231 208 --RLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPS-----------PFE-YAD-VVTTTTHKSL---RGPRGAMIF 269 (359)
Q Consensus 208 --~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~-----------~~~-~~D-~v~~s~~K~l---~gp~gG~l~ 269 (359)
....+++|..+|++.+++++.|+++--.....+.+.. +.. .+. +-..|.||.+ +|.+||++=
T Consensus 231 vls~e~ie~i~~fa~~~~l~llaDEVYQ~Nvy~~~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RGGYmE 310 (475)
T KOG0258|consen 231 VLSEENIEGIICFAAEEGLVLLADEVYQDNVYTTGSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRGGYME 310 (475)
T ss_pred hhcHHHHHHHHHHHHHcCeEEechHHHHhhccCCCcchHhHHHHHHHhcCccCCceEEEeeecccccceeeecccCCeee
Confidence 4557899999999999999999986433332211000 111 112 3455667876 467778775
Q ss_pred E
Q 018231 270 F 270 (359)
Q Consensus 270 ~ 270 (359)
+
T Consensus 311 v 311 (475)
T KOG0258|consen 311 S 311 (475)
T ss_pred c
Confidence 4
No 313
>PRK06058 4-aminobutyrate aminotransferase; Provisional
Probab=99.17 E-value=3.6e-09 Score=103.43 Aligned_cols=270 Identities=11% Similarity=0.062 Sum_probs=138.8
Q ss_pred CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhh--cCC
Q 018231 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL--LKP 135 (359)
Q Consensus 58 ~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al--~~~ 135 (359)
-.|+|.+++.+.+.+ .. +.... ....+ ....+.+++.+.+...... ...+.+||+.|+..++... ...
T Consensus 73 ~~p~v~~ai~~q~~~-~~--~~~~~-~~~~~----~~~~la~~l~~~~p~~~~~--~v~f~~sGseA~e~AlklAr~~tg 142 (443)
T PRK06058 73 SAPRVVEAVREQVAR-FT--HTCFM-VTPYE----GYVAVAEQLNRLTPGDHEK--RSALFNSGAEAVENAVKIARSYTG 142 (443)
T ss_pred CCHHHHHHHHHHHHh-cc--Ccccc-ccCCH----HHHHHHHHHHHhCCCCCCC--EEEEeCCcHHHHHHHHHHHHHhhC
Confidence 468999999988765 21 00000 00111 1112557777776532111 1244455655888766622 234
Q ss_pred CCeeeecCCCCCcccCccc------ccccccee--eeeeeeEEEecc--cCCC-CCCC--------CHHHHHHHhhhhCC
Q 018231 136 HDRIMALDLPHGGHLSHGY------QTDTKKIS--AVSIFFETMPYR--LNES-TGYI--------DYDQLEKSATLFRP 196 (359)
Q Consensus 136 Gd~Vl~~~~~~~~~~~~~~------~~~~~~~~--~~g~~~~~v~~~--~~~~-~~~~--------d~e~l~~~i~~~~~ 196 (359)
.++|+.....|.+...-.. ..++.... ..+ +..++++ .+.. .... .++.+++.+...++
T Consensus 143 r~~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 220 (443)
T PRK06058 143 RQAVVVFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPE--VYRAPMSYPYRDPKGLATDGEEAAARAITVIEKQVGADNL 220 (443)
T ss_pred CCeEEEECCCcCcChHHHHhhcCCCcccccccCCCCCC--ceEcCCCcccccccccccchHHHHHHHHHHHHHhhCCCce
Confidence 4788888766655531000 00010000 011 1112211 1100 0011 12233444432367
Q ss_pred cEEEEcCCC-C-CChh----hHHHHHHHHHHcCCEEEEecccc-cccccc--CCCCCCCCCceEEEeCCCCcCCCC-Cce
Q 018231 197 KLIVAGASA-Y-ARLY----DYERIRKVCNKQKAIMLADMAHI-SGLVAA--GVIPSPFEYADVVTTTTHKSLRGP-RGA 266 (359)
Q Consensus 197 k~v~l~~~n-~-g~~~----~l~~i~~la~~~~~~vivD~a~~-~g~~~~--~~~~~~~~~~D~v~~s~~K~l~gp-~gG 266 (359)
.+|++.|.. . |... -+++|.++|++||+++|.|+++. +|.... .....+. ..|+++++ |.+++. +-|
T Consensus 221 Aavi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG~~fa~~~~gv-~PDiv~~g--K~l~~G~Pi~ 297 (443)
T PRK06058 221 AAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAWFACEHEGI-VPDLITTA--KGIAGGLPLS 297 (443)
T ss_pred EEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcChhhhHHHhcCC-CCCEEEEc--ccccCCCccE
Confidence 788776444 3 3332 38999999999999999999985 222110 0011111 25999986 998643 338
Q ss_pred EEEEeCCcchhccCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhccccchhHhhhccccchhhhhcccCC
Q 018231 267 MIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNS 346 (359)
Q Consensus 267 ~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 346 (359)
++++++ ++.+.+..... +...+.|..+.+|..++|+.+.++...++.++..-.....+..-....
T Consensus 298 av~~~~--------------~i~~~~~~~~~-~~T~~gnpl~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~L~~l~~~~ 362 (443)
T PRK06058 298 AVTGRA--------------EIMDAPHPGGL-GGTYGGNPVACAAALAAIETIEEDDLVARARQIEALMTDRLRALAAED 362 (443)
T ss_pred EEEEcH--------------HHHhhccCCCC-CCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 888877 44444432211 122345667778888889988776555565555433333332213334
Q ss_pred CccccCCCCCC
Q 018231 347 ENIEEDKGRPC 357 (359)
Q Consensus 347 ~~~~~~~~~~~ 357 (359)
..+++++|+.+
T Consensus 363 ~~i~~vrg~G~ 373 (443)
T PRK06058 363 DRIGDVRGRGA 373 (443)
T ss_pred CcEEeeeccce
Confidence 67788888754
No 314
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=99.16 E-value=4.7e-09 Score=102.42 Aligned_cols=252 Identities=12% Similarity=0.058 Sum_probs=131.3
Q ss_pred cCceeeCCCC-----CCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEEC-C
Q 018231 47 KGLELIPSEN-----FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSL-S 120 (359)
Q Consensus 47 ~~i~l~~~~~-----~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~t-s 120 (359)
+.|++..+-. .-+|.|.+++.+.+.. +..+.... +. .+... .+.+++++++.-..+ .++|+ |
T Consensus 44 ~ylD~~~g~~~~~lGh~~p~v~~a~~~q~~~-~~~~~~~~--~~-~~~~~----~la~~L~~~~~~~~~----~v~f~~S 111 (433)
T PRK08117 44 EYLDFTSGIAVANVGHRHPKVVQAIKEQADK-LMHGPSGV--IY-YESIL----KLAEELAEITPGGLD----CFFFSNS 111 (433)
T ss_pred EEEECCcchhhccCCCCCHHHHHHHHHHHHh-ccCccccc--cC-CHHHH----HHHHHHHHhCCCCCC----EEEEeCc
Confidence 3456654422 2478999999988765 21111111 11 12222 255778887732222 37775 5
Q ss_pred ChHHHHHHHHhh--cCCCCeeeecCCCCCccc-Ccc-----ccccccc--eeeeeeeeEEEecccCC---CCC------C
Q 018231 121 GSPSNFQVYTAL--LKPHDRIMALDLPHGGHL-SHG-----YQTDTKK--ISAVSIFFETMPYRLNE---STG------Y 181 (359)
Q Consensus 121 G~~a~~~~~~al--~~~Gd~Vl~~~~~~~~~~-~~~-----~~~~~~~--~~~~g~~~~~v~~~~~~---~~~------~ 181 (359)
|+.|+..++... .....+|+..+..|.+.. ... ...++.. ....+ +..+|++... ... .
T Consensus 112 GseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 189 (433)
T PRK08117 112 GAEAIEGALKLAKHVTKRPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGS--VYQAPYPYCDRCPKGEDPEVCFL 189 (433)
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEECCCcCCcCHHHHhhcCCCccccccCCCCCCC--cEEeCCCccccccccCchhHHHH
Confidence 555888777642 233456777765444421 100 0000000 00111 1223322100 000 0
Q ss_pred CCHHHHHHHhhh----hCCcEEEEc--CCCCCChhh----HHHHHHHHHHcCCEEEEeccccccccccCC----CCCCCC
Q 018231 182 IDYDQLEKSATL----FRPKLIVAG--ASAYARLYD----YERIRKVCNKQKAIMLADMAHISGLVAAGV----IPSPFE 247 (359)
Q Consensus 182 ~d~e~l~~~i~~----~~~k~v~l~--~~n~g~~~~----l~~i~~la~~~~~~vivD~a~~~g~~~~~~----~~~~~~ 247 (359)
-|++++++.++. .++.+|++. .++.|.+.+ +++|.++|++||+++|+|++|+ |.-..+. ...+.
T Consensus 190 ~~~~~l~~~~~~~~~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~t-G~gr~G~~~~~~~~gv- 267 (433)
T PRK08117 190 ECLRDLESLFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQT-GFGRTGEWFAAQTFGV- 267 (433)
T ss_pred HHHHHHHHHHHhccCCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchh-ccCccccchhHhhcCC-
Confidence 156667776642 246677765 333565555 9999999999999999999997 4322111 11110
Q ss_pred CceEEEeCCCCcCCC-CCceEEEEeCCcchhccCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhccccch
Q 018231 248 YADVVTTTTHKSLRG-PRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITFS 326 (359)
Q Consensus 248 ~~D~v~~s~~K~l~g-p~gG~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~~~~~~ 326 (359)
..|++++ .|.+++ .+.|+++.++ ++.+.+........ .+.|..+.+|..++|+.+.++...+
T Consensus 268 ~pDi~t~--sK~lg~G~pigav~~~~--------------~i~~~~~~~~~~~T-~~~np~~~aaa~a~L~~l~~~~l~~ 330 (433)
T PRK08117 268 VPDIMTI--AKGIASGLPLSAVVASK--------------ELMEQWPLGSHGTT-FGGNPVACAAALATLEVIKEEKLLD 330 (433)
T ss_pred CCCEeeh--hhhccCCCcceeEEEcH--------------HHHhhccCCCCCCC-CCcCHHHHHHHHHHHHHHHhccHHH
Confidence 2577655 599863 3348888877 44444432211112 2346777888889999887654445
Q ss_pred hHhhh
Q 018231 327 HIHVF 331 (359)
Q Consensus 327 ~~~~~ 331 (359)
+.+..
T Consensus 331 ~~~~~ 335 (433)
T PRK08117 331 NANEM 335 (433)
T ss_pred HHHHH
Confidence 54444
No 315
>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.16 E-value=3.2e-09 Score=103.28 Aligned_cols=267 Identities=10% Similarity=0.017 Sum_probs=137.1
Q ss_pred CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHhhc---
Q 018231 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALL--- 133 (359)
Q Consensus 58 ~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~al~--- 133 (359)
-.|.|.+++.+.+.... +.....+.. + .+..+.+++.+.+....+ .+.++++++ |+..++....
T Consensus 59 ~~p~v~~ai~~q~~~~~---~~~~~~~~~-~----~~~~la~~l~~~~p~~~~----~v~f~~sGseA~e~A~klar~~~ 126 (423)
T PRK05964 59 NHPYIDQAIREQLDRLD---HVIFAGFTH-E----PAERLAQRLVALTPGGLD----HVFFSDSGSVAVEVALKMALQYW 126 (423)
T ss_pred CCHHHHHHHHHHHhhCC---CccccccCC-H----HHHHHHHHHHHhCCCCCC----EEEEeCCcHHHHHHHHHHHHHHH
Confidence 46899999988876521 000000111 1 112255777777642222 366655544 8887666431
Q ss_pred -----CCCCeeeecCCCCCcccCccccccccce---eeee--eeeEEEecccCCCCCCCCHHHHHHHhhh--hCCcEEEE
Q 018231 134 -----KPHDRIMALDLPHGGHLSHGYQTDTKKI---SAVS--IFFETMPYRLNESTGYIDYDQLEKSATL--FRPKLIVA 201 (359)
Q Consensus 134 -----~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~---~~~g--~~~~~v~~~~~~~~~~~d~e~l~~~i~~--~~~k~v~l 201 (359)
....+|+.....|.+............. ...+ .....++++.+ +....+++++++.+.+ .++.+|++
T Consensus 127 ~~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~l~~~l~~~~~~iaavi~ 205 (423)
T PRK05964 127 RNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFPPD-GYEQATLDALEALLEKHAGEIAAFIV 205 (423)
T ss_pred HhcCCCCCcEEEEEcCCcCCccHHHHhcCCCccccccccCcCCCCEEeCCCcc-hhHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 1235788877666654321111000000 0000 01223333322 1111237888888853 24556666
Q ss_pred cC--CC-CC----ChhhHHHHHHHHHHcCCEEEEecccc-ccccccC--CCCCCCCCceEEEeCCCCcCCCC--CceEEE
Q 018231 202 GA--SA-YA----RLYDYERIRKVCNKQKAIMLADMAHI-SGLVAAG--VIPSPFEYADVVTTTTHKSLRGP--RGAMIF 269 (359)
Q Consensus 202 ~~--~n-~g----~~~~l~~i~~la~~~~~~vivD~a~~-~g~~~~~--~~~~~~~~~D~v~~s~~K~l~gp--~gG~l~ 269 (359)
.| .. .| ....+++|.++|++||+++|+|++|+ +|..... ....+. ..|+++++ |+|+|+ +.|+++
T Consensus 206 Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~v-~pDi~~~~--K~l~gG~~p~~av~ 282 (423)
T PRK05964 206 EPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGTLFACEQAGV-SPDIMCLS--KGLTGGYLPLAATL 282 (423)
T ss_pred ecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhHHHhcCC-CCCeeeee--hhhhcCcccceEEE
Confidence 55 22 34 33358999999999999999999995 2221100 011110 26888776 999664 347788
Q ss_pred EeCCcchhccCCcchhhhHHHhhccc--cCCCCC-C--CCcHHHHHHHHHHHHHHhccccchhHhhhccccchhhhhccc
Q 018231 270 FRKGVKEINKQGKEVFYDYEEKINQA--VFPGLQ-G--GPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQN 344 (359)
Q Consensus 270 ~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~-g--t~~~~~i~al~~Al~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 344 (359)
+++ ++.+.+... ...... + +.|..+.+|..++++.+.++...++.+......... ++...
T Consensus 283 ~~~--------------~i~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~-l~~l~ 347 (423)
T PRK05964 283 CTA--------------EIFEAFYSDDRAKAFMHSPSYTANPLACAAANASLDLFEDEPVLERVAALSAGLAEG-LEPFR 347 (423)
T ss_pred EcH--------------HHHHhhhcCCcccccccCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-HHhhc
Confidence 877 444444221 001111 2 357788888889999887654444444443222222 22222
Q ss_pred CCCccccCCCC
Q 018231 345 NSENIEEDKGR 355 (359)
Q Consensus 345 ~~~~~~~~~~~ 355 (359)
....+++++|.
T Consensus 348 ~~~~i~~vrg~ 358 (423)
T PRK05964 348 DLPGVADVRVL 358 (423)
T ss_pred cCCCeEEeecc
Confidence 33445555554
No 316
>PRK07046 aminotransferase; Validated
Probab=99.16 E-value=3.4e-09 Score=103.63 Aligned_cols=244 Identities=13% Similarity=0.125 Sum_probs=133.7
Q ss_pred CceeeCCCCC-----CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCCh
Q 018231 48 GLELIPSENF-----TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGS 122 (359)
Q Consensus 48 ~i~l~~~~~~-----~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~ 122 (359)
.|++..+... -.|.|.+++.+.+......+. . . +.+..+.+.+.+.++.+ .+.|++++
T Consensus 77 yiD~~~g~g~~~lGh~~p~i~~Av~~q~~~~~~~~~------~---~--~~~~~lAe~l~~~~~~~------~v~F~nSG 139 (453)
T PRK07046 77 YDDFCLGDTGAMFGHSPAPVARALAEQARRGLTTML------P---S--EDAAWVGEELARRFGLP------YWQVATTA 139 (453)
T ss_pred EEEecccccccccCCCCHHHHHHHHHHHHhCCCCCC------C---C--HHHHHHHHHHHHHhCCC------EEEEECCH
Confidence 4565444322 368999999998876321111 1 1 12222557777777543 36776666
Q ss_pred H-HHHHHHHhh--cCCCCeeeecCCCCCcccCcccccccc-----ceeeeeee----eEEEecccCCCCCCCCHHHHHHH
Q 018231 123 P-SNFQVYTAL--LKPHDRIMALDLPHGGHLSHGYQTDTK-----KISAVSIF----FETMPYRLNESTGYIDYDQLEKS 190 (359)
Q Consensus 123 ~-a~~~~~~al--~~~Gd~Vl~~~~~~~~~~~~~~~~~~~-----~~~~~g~~----~~~v~~~~~~~~~~~d~e~l~~~ 190 (359)
+ |+..+++.. ....++|+...-.|.+........... .....+.. ...+.++. -|++.+++.
T Consensus 140 tEA~e~AlrlAR~~TGr~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------nd~~~l~~~ 213 (453)
T PRK07046 140 TDANRFVLRWARAVTGRPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQVHDLTATTRVVEF------NDLAALEAA 213 (453)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCCCccccCceEeeCC------CCHHHHHHH
Confidence 5 877666543 334577888776665542111100000 00000100 00111111 288999998
Q ss_pred hhhhCCcEEEEcC--CCCCChh----hHHHHHHHHHHcCCEEEEeccccccccccCCCC-CCCCCceEEEeCCCCcCCCC
Q 018231 191 ATLFRPKLIVAGA--SAYARLY----DYERIRKVCNKQKAIMLADMAHISGLVAAGVIP-SPFEYADVVTTTTHKSLRGP 263 (359)
Q Consensus 191 i~~~~~k~v~l~~--~n~g~~~----~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~-~~~~~~D~v~~s~~K~l~gp 263 (359)
+...++.+|++.| .+.|.+. -++++.++|++||+++|.|++++++.-..+... .+. ..|+++++ |.++|.
T Consensus 214 l~~~~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~tfr~g~Gg~~~~~gv-~PDi~t~g--K~lggG 290 (453)
T PRK07046 214 LADGDVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHTISSGPGGYTRAHGL-EPDFLVVG--KPIAGG 290 (453)
T ss_pred hCCCCeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEccccCccCCcchhHHhCC-Cccceeeh--hhhcCC
Confidence 8644677777763 3344332 389999999999999999999852211111110 111 25999875 998654
Q ss_pred C-ceEEEEeCCcchhccCCcchhhhHHHhhcccc---CCC---CCC--CCcHHHHHHHHHHHHHHhccccchhHhhh
Q 018231 264 R-GAMIFFRKGVKEINKQGKEVFYDYEEKINQAV---FPG---LQG--GPHNHTITGLAVALKQVCTLITFSHIHVF 331 (359)
Q Consensus 264 ~-gG~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~---~~g--t~~~~~i~al~~Al~~~~~~~~~~~~~~~ 331 (359)
. .|++++++ ++.+.+.... ..+ ..+ +.|..+.+|..+.|+.+.++...++.+..
T Consensus 291 ~Pi~av~g~~--------------~i~~~~~~~~~~~~~~~~~~~~T~~gnpl~~aa~~a~L~~l~~~~~~~~~~~~ 353 (453)
T PRK07046 291 VPCAVYGFSA--------------ELAERAQAAKASAPPGHSGIGTTLSANALAMAAMRATLAEVMTEAAYAHMLAL 353 (453)
T ss_pred CcceeeeehH--------------HHHHHHhhccccCCCCCceeCCCCcccHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 3 38888877 4344332110 011 112 34667778888889988776545554444
No 317
>PRK08360 4-aminobutyrate aminotransferase; Provisional
Probab=99.16 E-value=9.3e-09 Score=100.35 Aligned_cols=268 Identities=9% Similarity=-0.013 Sum_probs=140.4
Q ss_pred CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHhh--cC
Q 018231 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTAL--LK 134 (359)
Q Consensus 58 ~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~al--~~ 134 (359)
-+|.|.+++.+.+.... +....++. .+.. + .+.+.+.+.+....+ .|.|+++++ |+..++... ..
T Consensus 58 ~~p~v~~Ai~~ql~~~~---~~~~~~~~-~~~~--~--~la~~L~~~~p~~~~----~v~f~~sGsEAve~AlklAr~~t 125 (443)
T PRK08360 58 NNPRVVKAIKEQTDKLI---HYTPIYGF-PVEP--L--LLAEKLIEIAPGDNP----KVSFGLSGSDANDGAIKFARAYT 125 (443)
T ss_pred CCHHHHHHHHHHHHhcc---CccccccC-cHHH--H--HHHHHHHHhCCCCCC----EEEEcCCHHHHHHHHHHHHHHhc
Confidence 47899999998877521 11111111 1111 2 255677777654322 377776666 888766543 23
Q ss_pred CCCeeeecCCCCCccc-Cccc-----ccccccee-eeeeeeEEEecccCC-CCCC--------CCHHHHHHHhhh----h
Q 018231 135 PHDRIMALDLPHGGHL-SHGY-----QTDTKKIS-AVSIFFETMPYRLNE-STGY--------IDYDQLEKSATL----F 194 (359)
Q Consensus 135 ~Gd~Vl~~~~~~~~~~-~~~~-----~~~~~~~~-~~g~~~~~v~~~~~~-~~~~--------~d~e~l~~~i~~----~ 194 (359)
...+|+.....|.+.. .... ...+.... ..+ +..++++... ..+. .+++.+++.+.. .
T Consensus 126 gr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 203 (443)
T PRK08360 126 KRRKILSYLRSYYGSTYGAMSLTGLDFPVRALVGELSD--VHYIPYPDCYRCPFGKEPGSCKMECVEYIKEKFEGEVYAE 203 (443)
T ss_pred CCCeEEEEeCCcCCcCHHHHHhcCCCcccccCCCCCCC--cEEEeCCccccccccCchhhhHHHHHHHHHHHHHhccCCC
Confidence 4456777665554432 1000 00000000 111 2223322100 0000 134556666642 3
Q ss_pred CCcEEEEcCC-C-CCChh----hHHHHHHHHHHcCCEEEEecccc-ccccccC--CCCCCCCCceEEEeCCCCcCCC-CC
Q 018231 195 RPKLIVAGAS-A-YARLY----DYERIRKVCNKQKAIMLADMAHI-SGLVAAG--VIPSPFEYADVVTTTTHKSLRG-PR 264 (359)
Q Consensus 195 ~~k~v~l~~~-n-~g~~~----~l~~i~~la~~~~~~vivD~a~~-~g~~~~~--~~~~~~~~~D~v~~s~~K~l~g-p~ 264 (359)
++++|++.|. + +|... -+++|.++|++||+++|+|++|+ +|..... ....++ ..|++++ +|.+++ .+
T Consensus 204 ~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~G~~~a~~~~~~-~pDiitl--sK~l~~G~p 280 (443)
T PRK08360 204 GVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGKWFAIEHFGV-EPDIITL--GKPLGGGLP 280 (443)
T ss_pred CeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCccchhhhhcCC-CCCEEEe--cccccCCce
Confidence 6888888743 3 56433 38899999999999999999986 2221110 001111 2578876 599863 23
Q ss_pred ceEEEEeCCcchhccCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhccccchhHhhhccccchhhhhccc
Q 018231 265 GAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQN 344 (359)
Q Consensus 265 gG~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 344 (359)
.|++++++ ++.+.+....... ....+....++..++++.+.++....+.+....+.....-....
T Consensus 281 igav~~~~--------------~i~~~~~~~~~~~-T~~~~p~~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~ 345 (443)
T PRK08360 281 ISATIGRA--------------EIMDSLPPLAHAF-TLSGNPVASAAALAVIEEIEEKNLLKRAEKLGNYTKKRLEEMKK 345 (443)
T ss_pred eEEEEEcH--------------HHHhhhcCCCCCC-CCCcCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 48888876 4455443221111 22334555777778899887765555655554433332221123
Q ss_pred CCCccccCCCCCC
Q 018231 345 NSENIEEDKGRPC 357 (359)
Q Consensus 345 ~~~~~~~~~~~~~ 357 (359)
....+++++|++.
T Consensus 346 ~~~~v~~vrg~Gl 358 (443)
T PRK08360 346 KHELIGDVRGIGL 358 (443)
T ss_pred hCCCeeeeeccce
Confidence 3456788888765
No 318
>PRK13360 omega amino acid--pyruvate transaminase; Provisional
Probab=99.15 E-value=6.5e-09 Score=101.41 Aligned_cols=269 Identities=14% Similarity=0.097 Sum_probs=135.3
Q ss_pred CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHhhc---
Q 018231 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALL--- 133 (359)
Q Consensus 58 ~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~al~--- 133 (359)
-.|.|.+++.+.+.+ ...... . .+. .+... .+.+++.+++....+ .|.++++++ |+..++....
T Consensus 63 ~~p~v~~ai~~ql~~-l~~~~~-~-~~~-~~~~~----~la~~l~~~~p~~~~----~v~f~~sGseA~e~AlklAr~~~ 130 (442)
T PRK13360 63 GRPEIVEAVRAQAGE-LDYAPA-F-QMG-HPKAF----ELANRIAEIAPGGLN----HVFFTNSGSESVDTALKIALAYH 130 (442)
T ss_pred CCHHHHHHHHHHHHh-CCCccc-C-CcC-CHHHH----HHHHHHHHhCCCCCC----EEEEeCCcHHHHHHHHHHHHHHH
Confidence 468999999888764 211111 0 011 12222 255777777632212 366665555 8887665321
Q ss_pred ----CC-CCeeeecCCCCCcccC-c----cccccccceeeeeeeeEEEecccCCC--CCCC--------CHHHHHHHhhh
Q 018231 134 ----KP-HDRIMALDLPHGGHLS-H----GYQTDTKKISAVSIFFETMPYRLNES--TGYI--------DYDQLEKSATL 193 (359)
Q Consensus 134 ----~~-Gd~Vl~~~~~~~~~~~-~----~~~~~~~~~~~~g~~~~~v~~~~~~~--~~~~--------d~e~l~~~i~~ 193 (359)
.+ ..+|+.....|.+... . +...++....-....+..+|.+.+.. .+.. .++++++.+..
T Consensus 131 ~~~g~~~r~~ii~~~~~yHG~t~gals~tg~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~ 210 (442)
T PRK13360 131 RARGEGSRTRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTLDLARNAFSKGQPEHGAELADELERLVTL 210 (442)
T ss_pred HhcCCCCCcEEEEEcCCcCCccHhhhhccCChhhhhccCCCCCCCEEeCCCchhhccccCCChHHHHHHHHHHHHHHHHh
Confidence 12 3578887766555421 0 00001100000000122233221100 0100 24577777752
Q ss_pred ---hCCcEEEEcC--CCCCChhh----HHHHHHHHHHcCCEEEEecccc-ccccccC--CCCCCCCCceEEEeCCCCcCC
Q 018231 194 ---FRPKLIVAGA--SAYARLYD----YERIRKVCNKQKAIMLADMAHI-SGLVAAG--VIPSPFEYADVVTTTTHKSLR 261 (359)
Q Consensus 194 ---~~~k~v~l~~--~n~g~~~~----l~~i~~la~~~~~~vivD~a~~-~g~~~~~--~~~~~~~~~D~v~~s~~K~l~ 261 (359)
.++.+|++.| ++.|.+.+ +++|.++|++||+++|+|++|+ +|..... ....+. ..|+++++ |.++
T Consensus 211 ~~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv-~PDivt~g--K~l~ 287 (442)
T PRK13360 211 HDASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAPFAAQYFGV-TPDLLTCA--KGLT 287 (442)
T ss_pred cCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCC-CCceeeee--eccc
Confidence 2455666653 33566656 9999999999999999999994 4443211 111111 25888776 9996
Q ss_pred CC--CceEEEEeCCcchhccCCcchhhhHHHhhccc------cCCCCCCCCcHHHHHHHHHHHHHHhccccchhHhhhcc
Q 018231 262 GP--RGAMIFFRKGVKEINKQGKEVFYDYEEKINQA------VFPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSL 333 (359)
Q Consensus 262 gp--~gG~l~~~~~~~~~~~~g~~~~~~~~~~~~~~------~~~~~~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~~l 333 (359)
+. +-|.+++++ ++.+.+... ...+...+.|....++..++|+.+.++....+.++..-
T Consensus 288 gG~~P~gav~~~~--------------~i~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~L~~l~~~~l~~~~~~~g~ 353 (442)
T PRK13360 288 NGAIPMGAVFVSS--------------EIHDAFMQGPEAGIEFFHGYTYSGHPLACAAALATLDLYEREGLLTRAARLAP 353 (442)
T ss_pred cCccceEEEEEcH--------------HHHHHhhcCCccccccccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 53 346677776 333332211 01111223466777888889999887654455444432
Q ss_pred ccchhhhhcccCCCccccCCCCC
Q 018231 334 HVYPAFVSNQNNSENIEEDKGRP 356 (359)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~ 356 (359)
+.... ++.+.....+++++|+.
T Consensus 354 ~l~~~-l~~l~~~~~v~~vrG~G 375 (442)
T PRK13360 354 YWEDA-LHSLRDAPHVIDIRNLG 375 (442)
T ss_pred HHHHH-HHHhhcCCCeeeeeccc
Confidence 22221 21122234566776653
No 319
>PRK04260 acetylornithine aminotransferase; Provisional
Probab=99.14 E-value=3.2e-09 Score=101.63 Aligned_cols=245 Identities=12% Similarity=0.120 Sum_probs=129.5
Q ss_pred cCceeeCCC-----CCCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCC
Q 018231 47 KGLELIPSE-----NFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSG 121 (359)
Q Consensus 47 ~~i~l~~~~-----~~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG 121 (359)
..|++.++- .. .|++++++.+.+.... .++.. ...+++ +.+++.+...++. .++++++
T Consensus 30 ~~lD~~s~~~~~~lG~-~p~v~~a~~~~~~~~~--~~~~~-------~~~~~~----~~la~~l~~~~~~---~~~~~~S 92 (375)
T PRK04260 30 KYLDFSSGIGVTNLGF-HPQVQQALQKQAGLIW--HSPNL-------YLNSLQ----EEVAQKLIGDKDY---LAFFCNS 92 (375)
T ss_pred EEEECCCCcccccCCC-CHHHHHHHHHHHHhcC--cccCc-------cCCHHH----HHHHHHHhcCcCC---EEEEcCc
Confidence 346665442 23 6889999999876522 11111 112222 3444433222222 2456555
Q ss_pred hH-HHHHHHHhh--cCCCCeeeecCCCCCcc-cCccccccccc-eeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCC
Q 018231 122 SP-SNFQVYTAL--LKPHDRIMALDLPHGGH-LSHGYQTDTKK-ISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRP 196 (359)
Q Consensus 122 ~~-a~~~~~~al--~~~Gd~Vl~~~~~~~~~-~~~~~~~~~~~-~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~ 196 (359)
++ ++..++... ..++++|++.+..|.+. ........... ....+..+..++. ....|++++++.+.+ ++
T Consensus 93 GseA~~~Al~~ar~~~~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~dl~~l~~~l~~-~~ 166 (375)
T PRK04260 93 GAEANEAAIKIARKATGKQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSY-----AIFNDLNSVKALVNK-NT 166 (375)
T ss_pred cHHHHHHHHHHHHHhcCCCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCeEE-----eCCCCHHHHHHhcCC-Ce
Confidence 54 888666654 34567888877654432 22110000000 0000000000110 012389999998876 77
Q ss_pred cEEEEc-CCC-CCChh----hHHHHHHHHHHcCCEEEEeccccccccccCC-CCC-CCC-CceEEEeCCCCcCC-CCCce
Q 018231 197 KLIVAG-ASA-YARLY----DYERIRKVCNKQKAIMLADMAHISGLVAAGV-IPS-PFE-YADVVTTTTHKSLR-GPRGA 266 (359)
Q Consensus 197 k~v~l~-~~n-~g~~~----~l~~i~~la~~~~~~vivD~a~~~g~~~~~~-~~~-~~~-~~D~v~~s~~K~l~-gp~gG 266 (359)
++|++. ..+ +|... .++++.++|+++|+++|+|++|. |....+. ... -.. ..|+++ .+|.|+ |.+.|
T Consensus 167 a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~-g~g~~g~~~~~~~~~~~pdi~t--~sK~l~~G~~ig 243 (375)
T PRK04260 167 AAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQT-GMGRTGKLYAFEHYGIEPDIFT--LAKGLANGVPVG 243 (375)
T ss_pred EEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-CCCcccchhhhHhhCCCCCEEE--ecccccCCcceE
Confidence 788887 333 56443 38999999999999999999985 4322211 000 001 257665 459986 33458
Q ss_pred EEEEeCCcchhccCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhccccchhHhhhc
Q 018231 267 MIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFS 332 (359)
Q Consensus 267 ~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~~ 332 (359)
++++++ ++.+.+........+ +.+....++..++++.+..+...++.+...
T Consensus 244 ~~~~~~--------------~~~~~~~~~~~~~t~-~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~ 294 (375)
T PRK04260 244 AMLAKS--------------SLGGAFGYGSHGSTF-GGNKLSMAAASATLDIMLTAGFLEQALENG 294 (375)
T ss_pred EEEEcH--------------HHHhhcCCCCCCCCC-CcCHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 898887 445544332111222 334556677778888876554344444443
No 320
>PRK06062 hypothetical protein; Provisional
Probab=99.13 E-value=5.1e-09 Score=102.45 Aligned_cols=276 Identities=11% Similarity=0.037 Sum_probs=143.0
Q ss_pred cCceeeCCCC-----CCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCC
Q 018231 47 KGLELIPSEN-----FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSG 121 (359)
Q Consensus 47 ~~i~l~~~~~-----~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG 121 (359)
..|++..+-. --.|.|.+++.+.+.... ...+ .+. .+... .+.+++.++.....+ .|.|+++
T Consensus 54 ~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~-~~~~---~~~-~~~~~----~lae~L~~~~p~~~~----~v~f~~S 120 (451)
T PRK06062 54 RYLDFSSQLVNTNIGHQHPKVVAAIQEQAARLC-TVAP---AHA-NDARS----EAARLIAERAPGDLS----KVFFTNG 120 (451)
T ss_pred EEEEcccCHHhhcCCCCCHHHHHHHHHHHHhcC-CcCC---ccC-CHHHH----HHHHHHHHhCCCCCC----EEEEcCC
Confidence 3456654322 246899999988776521 0111 111 11112 255677776643222 3777665
Q ss_pred hH-HHHHHHHhh--cCCCCeeeecCCCCCcccCccccc-----cccc-eeeeeeeeEEEecccCC-CCC--CCC------
Q 018231 122 SP-SNFQVYTAL--LKPHDRIMALDLPHGGHLSHGYQT-----DTKK-ISAVSIFFETMPYRLNE-STG--YID------ 183 (359)
Q Consensus 122 ~~-a~~~~~~al--~~~Gd~Vl~~~~~~~~~~~~~~~~-----~~~~-~~~~g~~~~~v~~~~~~-~~~--~~d------ 183 (359)
++ |+..++... .....+|+.....|.+...-.... .... ....+ +..++.+... ..+ .-|
T Consensus 121 GsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~--~~~~~~p~~~~~~~~~~~~~~~~~~ 198 (451)
T PRK06062 121 GADANEHAVRMARLHTGRPKVLSAYRSYHGGTGSAINLTGDPRRWPNDTGRAG--VVHFFGPFLYRSEFHATTEEEECER 198 (451)
T ss_pred hHHHHHHHHHHHHHhhCCceEEEEeCCCCCCCHHHHhhcCCcccccCCCCCCC--CEEeCCCCccccccCCCChHHHHHH
Confidence 55 888766643 233467887765555542100000 0000 00111 1112111100 000 012
Q ss_pred -HHHHHHHhhh---hCCcEEEEc--CCCCCChhh----HHHHHHHHHHcCCEEEEecccc-ccccccC--CCCCCCCCce
Q 018231 184 -YDQLEKSATL---FRPKLIVAG--ASAYARLYD----YERIRKVCNKQKAIMLADMAHI-SGLVAAG--VIPSPFEYAD 250 (359)
Q Consensus 184 -~e~l~~~i~~---~~~k~v~l~--~~n~g~~~~----l~~i~~la~~~~~~vivD~a~~-~g~~~~~--~~~~~~~~~D 250 (359)
++.+++.++. .++.+|++. ..+-|.+.| +++|.++|++||+++|+|++|+ +|..... ....+. ..|
T Consensus 199 ~~~~le~~l~~~~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~~~~gv-~PD 277 (451)
T PRK06062 199 ALAHLERVIELEGPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGKWFAIEHFGV-VPD 277 (451)
T ss_pred HHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCcHHHHHHhcCC-CCC
Confidence 5777887753 245677776 333455555 9999999999999999999996 2222110 111111 269
Q ss_pred EEEeCCCCcCCCC--CceEEEEeCCcchhccCCcchhhhHHHhhcccc-CCCCCCCCcHHHHHHHHHHHHHHhccccchh
Q 018231 251 VVTTTTHKSLRGP--RGAMIFFRKGVKEINKQGKEVFYDYEEKINQAV-FPGLQGGPHNHTITGLAVALKQVCTLITFSH 327 (359)
Q Consensus 251 ~v~~s~~K~l~gp--~gG~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~gt~~~~~i~al~~Al~~~~~~~~~~~ 327 (359)
+++++ |.+++. +-|++++++ ++.+.+.... ..+...+-|..+.++..++|+.+.++....+
T Consensus 278 i~t~g--K~lggG~~Pigav~~~~--------------~i~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~ 341 (451)
T PRK06062 278 LITFA--KGVNSGYVPLGGVAISE--------------AIAATFADRPYPGGLTYSGHPLACAAAVATINAMEEEGIVEN 341 (451)
T ss_pred eeeec--hhhhcCCcCcEEEEEcH--------------HHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCHHHH
Confidence 88876 999763 346677776 4444433211 1221223356777788888999987755565
Q ss_pred Hhhhc---cccchhhhhcccCCCccccCCCCC
Q 018231 328 IHVFS---LHVYPAFVSNQNNSENIEEDKGRP 356 (359)
Q Consensus 328 ~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~ 356 (359)
.+... ++...+.+ ......+++++|+.
T Consensus 342 ~~~~G~~~l~~~L~~l--~~~~~~v~~vrG~G 371 (451)
T PRK06062 342 AARIGAEVLGPGLREL--AERHPSVGEVRGLG 371 (451)
T ss_pred HHHHHHHHHHHHHHHH--HhcCCcEEeEeccc
Confidence 55553 11122222 23345567777664
No 321
>PRK06105 aminotransferase; Provisional
Probab=99.13 E-value=8.4e-09 Score=101.16 Aligned_cols=270 Identities=10% Similarity=0.021 Sum_probs=141.6
Q ss_pred CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHhhc---
Q 018231 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALL--- 133 (359)
Q Consensus 58 ~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~al~--- 133 (359)
-+|.|.+|+.+.+.+ ......... +. .+.. + .+.+++.+++..+.+ .+.++++++ |+.+++....
T Consensus 65 ~~p~i~~Ai~~q~~~-~~~~~~~~~-~~-~~~~--~--~lae~L~~~~p~~~~----~v~f~~SGseAve~AlKlar~~~ 133 (460)
T PRK06105 65 SEQRLVEAAARQMKK-LPFYHTFSH-KS-HGPV--I--DLAEKLVAMAPVPMS----KVFFTNSGSEANDTVVKLVWYYN 133 (460)
T ss_pred CCHHHHHHHHHHHHh-CCCeecccc-cC-CHHH--H--HHHHHHHHhCCCCCC----EEEEeCCcHHHHHHHHHHHHHHH
Confidence 479999999998875 210001000 11 1111 2 255777777643222 366655544 8887766531
Q ss_pred -----CCCCeeeecCCCCCcccCccccc-----cccceeeeeeeeEEEecccCCC---CC-------CCCHHHHHHHhhh
Q 018231 134 -----KPHDRIMALDLPHGGHLSHGYQT-----DTKKISAVSIFFETMPYRLNES---TG-------YIDYDQLEKSATL 193 (359)
Q Consensus 134 -----~~Gd~Vl~~~~~~~~~~~~~~~~-----~~~~~~~~g~~~~~v~~~~~~~---~~-------~~d~e~l~~~i~~ 193 (359)
....+|+.....|.+...-.... .+......-..+..++++.... .+ ...++++++.+..
T Consensus 134 ~~~g~t~r~~il~~~~~yHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~~~~ 213 (460)
T PRK06105 134 NALGRPEKKKIISRQRGYHGVTIASASLTGLPNNHRSFDLPLDRILHTGCPHYYRFGLPGESEEAFATRLANELEALILA 213 (460)
T ss_pred HhcCCCCCcEEEEecCccCCcchhheeccCCcccccccCCCCCCCEEcCCCcccccccCCCChHHHHHHHHHHHHHHHHH
Confidence 12356777765555442111000 0000000000111222211000 00 0124567777642
Q ss_pred ---hCCcEEEEcC--CCCCChhh----HHHHHHHHHHcCCEEEEecccc-cccccc--CCCCCCCCCceEEEeCCCCcCC
Q 018231 194 ---FRPKLIVAGA--SAYARLYD----YERIRKVCNKQKAIMLADMAHI-SGLVAA--GVIPSPFEYADVVTTTTHKSLR 261 (359)
Q Consensus 194 ---~~~k~v~l~~--~n~g~~~~----l~~i~~la~~~~~~vivD~a~~-~g~~~~--~~~~~~~~~~D~v~~s~~K~l~ 261 (359)
.++.+|++.| .+.|...+ ++++.++|++||+++|+|++|. +|.... .....+. ..|+++++ |.++
T Consensus 214 ~~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG~~f~~~~~~v-~PDi~~~g--K~lg 290 (460)
T PRK06105 214 EGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGNMFGCETFGI-KPDILVMS--KQLS 290 (460)
T ss_pred cCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCchhhhHHhcCC-CCCeeeee--cccc
Confidence 2466777763 23454444 8999999999999999999994 554321 1111111 26999887 9997
Q ss_pred CC--CceEEEEeCCcchhccCCcchhhhHHHhhccccC------CCCCCCCcHHHHHHHHHHHHHHhccccchhHhhhcc
Q 018231 262 GP--RGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVF------PGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSL 333 (359)
Q Consensus 262 gp--~gG~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~------~~~~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~~l 333 (359)
|. +.|++++++ ++.+.+..... .+...+.|..+.++..++|+.+.++...++.++..-
T Consensus 291 gG~~P~~av~~~~--------------~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~i~~~~l~~~v~~~g~ 356 (460)
T PRK06105 291 SSYQPLSAVLMNE--------------KVYDPIADESGKIGTFGHGFTASGHPVAAAVALENLAIIEERDLVGNAAERGA 356 (460)
T ss_pred cCcccceEEEEcH--------------HHHHHHhcccccCcccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 64 468888877 44443322110 111223455666777788999998766677666655
Q ss_pred ccchhhhhcccCCCccccCCCCC
Q 018231 334 HVYPAFVSNQNNSENIEEDKGRP 356 (359)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~ 356 (359)
+....... +.+...+++++|+=
T Consensus 357 ~l~~~L~~-l~~~~~v~~vrG~G 378 (460)
T PRK06105 357 RLQARLRA-LADHPLVGEVRGVG 378 (460)
T ss_pred HHHHHHHH-hhcCCCeEEEEecc
Confidence 54443332 23346677777763
No 322
>PRK07482 hypothetical protein; Provisional
Probab=99.11 E-value=6.8e-09 Score=101.84 Aligned_cols=280 Identities=12% Similarity=-0.009 Sum_probs=145.4
Q ss_pred CceeeCCCC-----CCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCCh
Q 018231 48 GLELIPSEN-----FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGS 122 (359)
Q Consensus 48 ~i~l~~~~~-----~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~ 122 (359)
.|++.++-. --.|+|.+|+.+.+.... .... ...+. .+... .+.+++.+.+..+.+ .+.|++++
T Consensus 52 ylD~~sg~~~~~lGh~~p~v~~Av~~q~~~~~-~~~~-~~~~~-~~~~~----~lAe~L~~~~p~~~~----~v~f~~sG 120 (461)
T PRK07482 52 YIDAFAGLYCVNVGYGRTEVAEAIAEQAKELA-YYHT-YVGHG-TEASI----TLSKRIIDRAPAGMS----KVYYGLSG 120 (461)
T ss_pred EEEcccchhhhcCCCCCHHHHHHHHHHHHhcC-cccc-ccccC-CHHHH----HHHHHHHHhCCCCcC----EEEEeCch
Confidence 456554322 247899999998877521 0000 00011 11112 255777776643222 36666554
Q ss_pred H-HHHHHHHhhc------C-C-CCeeeecCCCCCcccCc-----cccccccc--eeeeeeeeEEEecccCCC----C---
Q 018231 123 P-SNFQVYTALL------K-P-HDRIMALDLPHGGHLSH-----GYQTDTKK--ISAVSIFFETMPYRLNES----T--- 179 (359)
Q Consensus 123 ~-a~~~~~~al~------~-~-Gd~Vl~~~~~~~~~~~~-----~~~~~~~~--~~~~g~~~~~v~~~~~~~----~--- 179 (359)
+ |+..++.... . + ..+|+.....|.+...- ....++.. ....+ +..++.+.... +
T Consensus 121 SEAve~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t~ga~s~~~~~~~~~~~~~~~~~--~~~~~~p~~~~~~~~~~~~ 198 (461)
T PRK07482 121 SDANETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVTGSLTGLSLFHQHFDLPIAR--VLHTEAPHYYRRADAGMSE 198 (461)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCceEEEecCccCCccHhhhhccCCchhhhccCCCCCC--CEEcCCCccccccccCCCH
Confidence 4 8887665431 1 2 35688777665553210 00000000 00111 11122111000 0
Q ss_pred --C-CCCHHHHHHHhhh---hCCcEEEEcCCC--CCCh----hhHHHHHHHHHHcCCEEEEecccc-cccccc--CCCCC
Q 018231 180 --G-YIDYDQLEKSATL---FRPKLIVAGASA--YARL----YDYERIRKVCNKQKAIMLADMAHI-SGLVAA--GVIPS 244 (359)
Q Consensus 180 --~-~~d~e~l~~~i~~---~~~k~v~l~~~n--~g~~----~~l~~i~~la~~~~~~vivD~a~~-~g~~~~--~~~~~ 244 (359)
. .-+++.+++.+.. .++.+|++.|-. .|.+ .-+++|.++|++||+++|.|++++ +|.... .....
T Consensus 199 ~~~~~~~~~~l~~~~~~~~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~~~~ 278 (461)
T PRK07482 199 EQFSAYCADELEELILAEGPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLGSMFGSDHY 278 (461)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCcchhhHHhc
Confidence 0 1145777877742 246777776332 3432 238899999999999999999985 333221 01111
Q ss_pred CCCCceEEEeCCCCcCCCC--CceEEEEeCCcchhccCCcchhhhHHHhhccc------cCCCCCCCCcHHHHHHHHHHH
Q 018231 245 PFEYADVVTTTTHKSLRGP--RGAMIFFRKGVKEINKQGKEVFYDYEEKINQA------VFPGLQGGPHNHTITGLAVAL 316 (359)
Q Consensus 245 ~~~~~D~v~~s~~K~l~gp--~gG~l~~~~~~~~~~~~g~~~~~~~~~~~~~~------~~~~~~gt~~~~~i~al~~Al 316 (359)
+. ..|+++++ |.++|. +-|++++++ ++.+.+... ...+...+.|..+.+|..++|
T Consensus 279 gv-~PDiv~~g--Kgl~gG~~Pi~av~~~~--------------~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L 341 (461)
T PRK07482 279 GI-EPDLITVA--KGLTSAYAPLSGSIVGE--------------KVWDVLEQGSDEHGAIGHGWTYSGHPICAAAALANL 341 (461)
T ss_pred CC-CCCEEEEc--cccccCccccceeeecH--------------HHHHHHhcccccCCccccCCCCCcCHHHHHHHHHHH
Confidence 11 26999987 999664 336777776 333333211 011112234667778888889
Q ss_pred HHHhccccchhHhhhccccchhhhhcccCCCccccCCCCCC
Q 018231 317 KQVCTLITFSHIHVFSLHVYPAFVSNQNNSENIEEDKGRPC 357 (359)
Q Consensus 317 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 357 (359)
+.+.++...++.++..-........-......+++++|+-.
T Consensus 342 ~~~~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Gl 382 (461)
T PRK07482 342 DILERENLVGNAAEVGAYFRARLRAAFGDHPLVGEVRGVGM 382 (461)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeecee
Confidence 99988766666666644444333222344567788888753
No 323
>PRK07495 4-aminobutyrate aminotransferase; Provisional
Probab=99.11 E-value=2.3e-08 Score=97.21 Aligned_cols=267 Identities=14% Similarity=0.103 Sum_probs=136.4
Q ss_pred CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHhh--cC
Q 018231 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTAL--LK 134 (359)
Q Consensus 58 ~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~al--~~ 134 (359)
-.|.|.+++.+.+.... +.....+. .+... .+.+++.+.+.-...+ .++++++++ |+..++... ..
T Consensus 57 ~~p~v~~ai~~ql~~l~---~~~~~~~~-~~~~~----~la~~l~~~~p~~~~~---~v~f~~SGseA~e~AlklAr~~t 125 (425)
T PRK07495 57 RHPRVIAAVKAQLDRFT---HTCHQVVP-YENYV----RLAERLNALVPGDFAK---KTIFVTTGAEAVENAVKIARAAT 125 (425)
T ss_pred CCHHHHHHHHHHHhhcc---CcccCccC-CHHHH----HHHHHHHHhCCCCCCC---EEEECCchHHHHHHHHHHHHHhh
Confidence 47899999988876521 11000111 11111 2456677766432111 377766555 888766543 23
Q ss_pred CCCeeeecCCCCCcccCccc------cccccce--eeeeeeeEEEecccCCCCCC---CCHHHHHHHhhh----hCCcEE
Q 018231 135 PHDRIMALDLPHGGHLSHGY------QTDTKKI--SAVSIFFETMPYRLNESTGY---IDYDQLEKSATL----FRPKLI 199 (359)
Q Consensus 135 ~Gd~Vl~~~~~~~~~~~~~~------~~~~~~~--~~~g~~~~~v~~~~~~~~~~---~d~e~l~~~i~~----~~~k~v 199 (359)
...+|+.....|.+...-.. ..++... ...+ +..+|++.+ ..+. -+++++++.+.. .++++|
T Consensus 126 gr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~g~~~~~~~~~l~~~~~~~~~~~~iaav 202 (425)
T PRK07495 126 GRSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAMMPD--VYHVPFPVE-LHGVSVEQSLAALDKLFKADVDPQRVAAI 202 (425)
T ss_pred CCCeEEEECCCcCCccHHHhhhcCCCcccccCCCCCCCC--eEEecCCcc-cccccHHHHHHHHHHHHHhccCCCceEEE
Confidence 45678877765555421000 0011110 0111 233443322 1111 124555766642 356788
Q ss_pred EEc--CCCCCCh----hhHHHHHHHHHHcCCEEEEeccccccccccC-CCC-CCCC-CceEEEeCCCCcCCC-CCceEEE
Q 018231 200 VAG--ASAYARL----YDYERIRKVCNKQKAIMLADMAHISGLVAAG-VIP-SPFE-YADVVTTTTHKSLRG-PRGAMIF 269 (359)
Q Consensus 200 ~l~--~~n~g~~----~~l~~i~~la~~~~~~vivD~a~~~g~~~~~-~~~-~~~~-~~D~v~~s~~K~l~g-p~gG~l~ 269 (359)
++. ..+.|.. .-+++|.++|++||+++|.|++|+ |.-..+ ... ..+. ..|++++| |.+++ .+.|+++
T Consensus 203 i~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-G~gr~G~~~a~~~~gv~pDi~tls--K~l~~G~pigav~ 279 (425)
T PRK07495 203 IIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQT-GFARTGKLFAMEHHEVAADLTTMA--KGLAGGFPLAAVT 279 (425)
T ss_pred EECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-cCCcCCCceeecccCCCCCEEeeh--hhhcCCccceEEE
Confidence 876 3334522 248899999999999999999986 321111 100 0011 25887776 98854 3348888
Q ss_pred EeCCcchhccCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhccccchhHhhhccccchhhhhcccCCCcc
Q 018231 270 FRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSENI 349 (359)
Q Consensus 270 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 349 (359)
+++ ++.+.+........+ +.+....++..++++.+.++....+.+...-+...+.-.-......+
T Consensus 280 ~~~--------------~i~~~~~~~~~~~T~-~~~pl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i 344 (425)
T PRK07495 280 GRA--------------EIMDAPGPGGLGGTY-GGNPLGIAAAHAVLDVIEEEDLCERANQLGNRLKQRLASLRETVPEI 344 (425)
T ss_pred EcH--------------HHHhccCCCCcCCCC-CCCHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhhCCCe
Confidence 877 444444322222222 34556677777889998876444554444322222221112223456
Q ss_pred ccCCCCC
Q 018231 350 EEDKGRP 356 (359)
Q Consensus 350 ~~~~~~~ 356 (359)
++++|+.
T Consensus 345 ~~vrG~G 351 (425)
T PRK07495 345 ADIRGPG 351 (425)
T ss_pred eeeecCc
Confidence 7766653
No 324
>PLN00144 acetylornithine transaminase
Probab=99.10 E-value=1.3e-08 Score=97.58 Aligned_cols=155 Identities=10% Similarity=0.081 Sum_probs=90.3
Q ss_pred CHHHHHHHhhhhCCcEEEEcCCC-CC-C--hhh--HHHHHHHHHHcCCEEEEeccccc-cccccCC--CCCCCCCceEEE
Q 018231 183 DYDQLEKSATLFRPKLIVAGASA-YA-R--LYD--YERIRKVCNKQKAIMLADMAHIS-GLVAAGV--IPSPFEYADVVT 253 (359)
Q Consensus 183 d~e~l~~~i~~~~~k~v~l~~~n-~g-~--~~~--l~~i~~la~~~~~~vivD~a~~~-g~~~~~~--~~~~~~~~D~v~ 253 (359)
|++.+++.+...++++|++.|.. .| . ... +++|.++|++||+++|.|++|+. |...... ...++ ..|+++
T Consensus 155 d~~~l~~~~~~~~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g~~~~~~~~~~-~PDi~t 233 (382)
T PLN00144 155 NLEAARKLIQKGKTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGYLWAHEAYGV-EPDIMT 233 (382)
T ss_pred CHHHHHHhcCCCCeEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchHhhhhhcCC-CCCEEE
Confidence 78999988865467888887443 22 2 123 88999999999999999999852 2211000 01111 258777
Q ss_pred eCCCCcCC-CCCceEEEEeCCcchhccCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhccccchhHhhhc
Q 018231 254 TTTHKSLR-GPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFS 332 (359)
Q Consensus 254 ~s~~K~l~-gp~gG~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~~ 332 (359)
+| |.++ |.+.|++++++ ++.+.+........+ +.+....++..++++.+.++...++.+...
T Consensus 234 ~s--K~l~~G~pig~v~~~~--------------~~~~~~~~~~~~~T~-~~~pl~~aaa~a~l~~i~~~~~~~~~~~~g 296 (382)
T PLN00144 234 LA--KPLAGGLPIGAVLVTE--------------KVASAINPGDHGSTF-AGGPLVCNAALAVLDKISKPGFLASVAKKG 296 (382)
T ss_pred ec--ccccCCcceEEEEEcH--------------HHHhccCCCCCCCCC-CCCHHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 76 9985 33448888877 445544332222222 344556677778889987654445555443
Q ss_pred cccchhhhhcccCCCccccCCCC
Q 018231 333 LHVYPAFVSNQNNSENIEEDKGR 355 (359)
Q Consensus 333 l~~~~~~~~~~~~~~~~~~~~~~ 355 (359)
.+.......-+.+...+++++|+
T Consensus 297 ~~l~~~l~~~~~~~~~~~~vrg~ 319 (382)
T PLN00144 297 EYLRELLRRKLGGNPHVKEVRGV 319 (382)
T ss_pred HHHHHHHHHHHhhCCCceeeecC
Confidence 33322222112333445665554
No 325
>PRK05965 hypothetical protein; Provisional
Probab=99.08 E-value=1.6e-08 Score=99.11 Aligned_cols=269 Identities=12% Similarity=0.034 Sum_probs=142.5
Q ss_pred CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECC-ChHHHHHHHHhh---c
Q 018231 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLS-GSPSNFQVYTAL---L 133 (359)
Q Consensus 58 ~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~ts-G~~a~~~~~~al---~ 133 (359)
-.|+|.+|+.+.+.+.. ... ....+. .+.. + .+.+++.+.+..+.+ .++|++ |+.|+..++... .
T Consensus 63 ~~p~i~~Ai~~q~~~~~-~~~-~~~~~~-~~~~--~--~lae~L~~~~p~~~~----~v~f~~sGSEAve~AlKlAr~~~ 131 (459)
T PRK05965 63 GQESIVEAAAEQMRELP-YAT-GYFHFG-SEPA--I--RLAAKLAERAPGSLN----HVYFTLGGSDAVDSAVRFIRHYW 131 (459)
T ss_pred CCHHHHHHHHHHHHhcC-Ccc-cccccC-CHHH--H--HHHHHHHhhCCCCcC----EEEEeCChhHHHHHHHHHHHHHH
Confidence 36899999998877521 000 000011 1111 1 255677776642222 477765 555888766542 1
Q ss_pred ---C-C-CCeeeecCCCCCcccCc-----cccccccc--eeeeeeeeEEEecccCC-CCCCCC--------HHHHHHHhh
Q 018231 134 ---K-P-HDRIMALDLPHGGHLSH-----GYQTDTKK--ISAVSIFFETMPYRLNE-STGYID--------YDQLEKSAT 192 (359)
Q Consensus 134 ---~-~-Gd~Vl~~~~~~~~~~~~-----~~~~~~~~--~~~~g~~~~~v~~~~~~-~~~~~d--------~e~l~~~i~ 192 (359)
. + ..+|+.....|.+...- ....++.. ....+ ...++.+... ....-| ++++++.+.
T Consensus 132 ~~~g~~~r~kii~~~~~YHG~t~~a~s~t~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~ 209 (459)
T PRK05965 132 NATGRPSKKQFISLERGYHGSSSVGAGLTALPAFHRGFDLPLPW--QHKIPSPYPYRNPVGDDPQAIIAASVAALRAKVA 209 (459)
T ss_pred HhcCCCCccEEEEecCCcCcccHHHHHhcCCchhhcccCCCCCC--CEEcCCCcccccccCCChHHHHHHHHHHHHHHHH
Confidence 1 2 35788887666654210 00000100 00111 1123222110 001113 256777775
Q ss_pred h---hCCcEEEEcCCC--CCCh----hhHHHHHHHHHHcCCEEEEecccc-cccccc--CCCCCCCCCceEEEeCCCCcC
Q 018231 193 L---FRPKLIVAGASA--YARL----YDYERIRKVCNKQKAIMLADMAHI-SGLVAA--GVIPSPFEYADVVTTTTHKSL 260 (359)
Q Consensus 193 ~---~~~k~v~l~~~n--~g~~----~~l~~i~~la~~~~~~vivD~a~~-~g~~~~--~~~~~~~~~~D~v~~s~~K~l 260 (359)
. .++.+|++.|-. .|.+ .-++++.++|++||+++|.|++++ +|.... .....+. ..|+++++ |.+
T Consensus 210 ~~~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv-~PDiv~~g--Kgl 286 (459)
T PRK05965 210 ELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGPLFACEAEGV-VPDLMTVA--KGL 286 (459)
T ss_pred hcCCCceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCchhhhHhhcCC-CCCeEEec--hhh
Confidence 3 246677776332 3422 338899999999999999999985 333221 1111111 26999998 999
Q ss_pred CCC--CceEEEEeCCcchhccCCcchhhhHHHhhccc------cCCCCCCCCcHHHHHHHHHHHHHHhccccchhHhhhc
Q 018231 261 RGP--RGAMIFFRKGVKEINKQGKEVFYDYEEKINQA------VFPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFS 332 (359)
Q Consensus 261 ~gp--~gG~l~~~~~~~~~~~~g~~~~~~~~~~~~~~------~~~~~~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~~ 332 (359)
+|. +-|++++++ ++.+.+... ...+...+.|..+.+|..++|+.+.++...++.++..
T Consensus 287 ~gG~~Pi~av~~~~--------------~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~~~~~g 352 (459)
T PRK05965 287 TSGYVPMGAVLMSD--------------HVYQGIADGAGAAAPVGHGYTYSAHPVSAAVGLEVLRLYHEGGLLANGQKAG 352 (459)
T ss_pred ccCCcceeEEEEcH--------------HHHHHHhccccccccccccCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 765 348888877 333333211 0111122345566777778899998876667777765
Q ss_pred cccchhhhhcccCCCccccCCCCCC
Q 018231 333 LHVYPAFVSNQNNSENIEEDKGRPC 357 (359)
Q Consensus 333 l~~~~~~~~~~~~~~~~~~~~~~~~ 357 (359)
-+........ .....+++++|+-.
T Consensus 353 ~~l~~~l~~l-~~~~~v~~vrG~Gl 376 (459)
T PRK05965 353 PRFAAGLDAL-RAHPLVGDVRGRGL 376 (459)
T ss_pred HHHHHHHHhh-ccCCCEEEEeecce
Confidence 5554443322 23467788888753
No 326
>PRK08593 4-aminobutyrate aminotransferase; Provisional
Probab=99.08 E-value=1.7e-08 Score=98.67 Aligned_cols=268 Identities=14% Similarity=0.044 Sum_probs=138.0
Q ss_pred CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHhh--cC
Q 018231 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTAL--LK 134 (359)
Q Consensus 58 ~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~al--~~ 134 (359)
-.|.|.+++.+.+.... +....++. .+... .+.+++.+.+.....+ .|.|+++++ |+..++... ..
T Consensus 59 ~~p~v~~Ai~~ql~~~~---~~~~~~~~-~~~~~----~lae~L~~~~p~~~~~---~v~f~~SGseA~e~AiklAr~~t 127 (445)
T PRK08593 59 APPRVVEAIKAQADKFI---HYTPAYMY-HEPLV----RLAKKLCELAPGDFEK---RVTFGLSGSDANDGIIKFARAYT 127 (445)
T ss_pred CCHHHHHHHHHHHHhcc---CccccccC-CHHHH----HHHHHHHHhCCCCCCC---EEEECCchHHHHHHHHHHHHHhh
Confidence 47999999998876521 11110111 12222 2557777776432111 477765555 888776642 22
Q ss_pred CCCeeeecCCCCCcccCccccc------ccc--ceeeeeeeeEEEecccCCC--CCCCC-------HHHHHHHhhh----
Q 018231 135 PHDRIMALDLPHGGHLSHGYQT------DTK--KISAVSIFFETMPYRLNES--TGYID-------YDQLEKSATL---- 193 (359)
Q Consensus 135 ~Gd~Vl~~~~~~~~~~~~~~~~------~~~--~~~~~g~~~~~v~~~~~~~--~~~~d-------~e~l~~~i~~---- 193 (359)
...+|+.....|.+........ .+. .....+ +..++++-... ....+ ++++++.+..
T Consensus 128 gr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (445)
T PRK08593 128 GRPYIISFTNAYHGSTYGSLSMSGISLNMRRKYGPLLPG--FVHIPFPDKYRGMYEEPDANFVEEYLAPLKEMFEKYLPA 205 (445)
T ss_pred CCCeEEEECCCcCCCcHHHHhhcCCCcccccCCCCCCCC--cEEeCCCccccccccCCcHHHHHHHHHHHHHHHHhhcCC
Confidence 3456777775555542111000 000 000111 22233221100 00011 2445544431
Q ss_pred hCCcEEEEcCCC--CCChhh----HHHHHHHHHHcCCEEEEecccc-ccccccC--CCCCCCCCceEEEeCCCCcCCC-C
Q 018231 194 FRPKLIVAGASA--YARLYD----YERIRKVCNKQKAIMLADMAHI-SGLVAAG--VIPSPFEYADVVTTTTHKSLRG-P 263 (359)
Q Consensus 194 ~~~k~v~l~~~n--~g~~~~----l~~i~~la~~~~~~vivD~a~~-~g~~~~~--~~~~~~~~~D~v~~s~~K~l~g-p 263 (359)
.++.+|++.|-. .|...+ +++|.++|++||+++|+|++|. +|..... ....+. ..|+++++ |.+++ .
T Consensus 206 ~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~GrtG~~~a~~~~gv-~pDi~t~g--K~l~~G~ 282 (445)
T PRK08593 206 DEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGKWSSISHFNI-TPDLMSFG--KSLAGGM 282 (445)
T ss_pred CceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchHHHHHhcCC-CCCEeeec--ccccCCc
Confidence 256777776332 454434 8999999999999999999984 3322110 011110 25888765 98864 3
Q ss_pred CceEEEEeCCcchhccCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhccccchhHhhhccccchhhhhcc
Q 018231 264 RGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQ 343 (359)
Q Consensus 264 ~gG~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~~l~~~~~~~~~~ 343 (359)
+.|++++++ ++.+.+... ........|..+.+|..++++.+.++...++.+...-+....+..-.
T Consensus 283 p~gav~~~~--------------~i~~~~~~~-~~~~T~~~~pl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~ 347 (445)
T PRK08593 283 PMSAIVGRK--------------EIMESLEAP-AHLFTTGANPVSCAAALATIDMIEDESLLQRSAEKGEYARKRFDQWV 347 (445)
T ss_pred ccEEEEEcH--------------HHHhhhccC-CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 458888887 455444321 11112234556677788889998876555555555433333332223
Q ss_pred cCCCccccCCCCC
Q 018231 344 NNSENIEEDKGRP 356 (359)
Q Consensus 344 ~~~~~~~~~~~~~ 356 (359)
.....+++++|+-
T Consensus 348 ~~~~~v~~vrG~G 360 (445)
T PRK08593 348 SKYNFVGDVRGYG 360 (445)
T ss_pred hcCCcEEEEeccc
Confidence 3446678877764
No 327
>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated
Probab=99.08 E-value=1.2e-08 Score=99.12 Aligned_cols=265 Identities=11% Similarity=0.034 Sum_probs=136.3
Q ss_pred CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECC-ChHHHHHHHHhhc---
Q 018231 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLS-GSPSNFQVYTALL--- 133 (359)
Q Consensus 58 ~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~ts-G~~a~~~~~~al~--- 133 (359)
-.|.|.+|+.+.+.... +.....+. .+.. ..+.+++.+++....+ .+.+++ |+.|+..++....
T Consensus 60 ~~p~i~~Ai~~q~~~~~---~~~~~~~~-~~~~----~~la~~L~~~~p~~~~----~v~f~~SGsEAve~AlklAr~~~ 127 (428)
T PRK07986 60 NHPQLNAAMKSQIDAMS---HVMFGGIT-HPPA----IELCRKLVAMTPQPLE----CVFLADSGSVAVEVAMKMALQYW 127 (428)
T ss_pred CCHHHHHHHHHHHhhcC---CccccccC-CHHH----HHHHHHHHhhCCCCcC----EEEEeCCcHHHHHHHHHHHHHHH
Confidence 46899999988776521 00000001 1111 2255777777643222 366665 5558887665331
Q ss_pred ----CCCCeeeecCCCCCcccCccccc------cccce--eeeeeeeEEEecccCC--CCC-CCCHHHHHHHhhh--hCC
Q 018231 134 ----KPHDRIMALDLPHGGHLSHGYQT------DTKKI--SAVSIFFETMPYRLNE--STG-YIDYDQLEKSATL--FRP 196 (359)
Q Consensus 134 ----~~Gd~Vl~~~~~~~~~~~~~~~~------~~~~~--~~~g~~~~~v~~~~~~--~~~-~~d~e~l~~~i~~--~~~ 196 (359)
.+..+|+.....|.+...-.... ++... ...+ ...++.+... ..+ .-|++++++.+.. .++
T Consensus 128 ~~~g~~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~--~~~~~~p~~~~~~~~~~~d~~~l~~~l~~~~~~i 205 (428)
T PRK07986 128 QAKGEPRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPE--NLFAPAPQSRFDGEWDERDIAPFARLMAAHRHEI 205 (428)
T ss_pred HhcCCCCcEEEEECCCcCCCcHhhhcccCCchhhhhccCCCCCC--CEEECCCCcccchhhHHHHHHHHHHHHHhCCCcE
Confidence 23467888876655532100000 00000 0001 1112221110 001 1256788887753 134
Q ss_pred cEEEEcC--CCC-CC----hhhHHHHHHHHHHcCCEEEEeccccccccccC-C---CCCCCCCceEEEeCCCCcCCCC--
Q 018231 197 KLIVAGA--SAY-AR----LYDYERIRKVCNKQKAIMLADMAHISGLVAAG-V---IPSPFEYADVVTTTTHKSLRGP-- 263 (359)
Q Consensus 197 k~v~l~~--~n~-g~----~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~-~---~~~~~~~~D~v~~s~~K~l~gp-- 263 (359)
.+|++.| ... |. ...+++|.++|++||+++|+|++| .|.-..+ . ...+. ..|+++++ |.++|.
T Consensus 206 aavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~-tG~GrtG~~fa~~~~gv-~PDi~t~g--K~l~gG~~ 281 (428)
T PRK07986 206 AAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIA-TGFGRTGKLFACEHAGI-APDILCLG--KALTGGTM 281 (428)
T ss_pred EEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccc-cCCccCCCeeeecccCC-CCCEEEec--hhhhCCcc
Confidence 5666654 233 32 244899999999999999999998 4431111 0 11111 25888765 998643
Q ss_pred CceEEEEeCCcchhccCCcchhhhHHHhhcccc----CCCCCCCCcHHHHHHHHHHHHHHhccccchhHhhhccccchhh
Q 018231 264 RGAMIFFRKGVKEINKQGKEVFYDYEEKINQAV----FPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAF 339 (359)
Q Consensus 264 ~gG~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~----~~~~~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~~l~~~~~~ 339 (359)
+.|++++++ ++.+.+.... ..+...+.|..+.+|..++|+.+.++...++.++..-+.....
T Consensus 282 p~~av~~~~--------------~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~L~~i~~~~~~~~~~~~g~~l~~~l 347 (428)
T PRK07986 282 TLSATLTTR--------------EVAETISNGEAGCFMHGPTFMGNPLACAVANASLSLLESGDWQQQVAAIEAQLREEL 347 (428)
T ss_pred cCcchhchH--------------HHHHHhhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 336667776 4444443211 1112223456777888888999887655555555543333322
Q ss_pred hhcccCCCccccCCCC
Q 018231 340 VSNQNNSENIEEDKGR 355 (359)
Q Consensus 340 ~~~~~~~~~~~~~~~~ 355 (359)
. .+.....+++++|+
T Consensus 348 ~-~l~~~~~i~~vRg~ 362 (428)
T PRK07986 348 A-PLRDAPMVADVRVL 362 (428)
T ss_pred H-HHhcCCCEEeEecc
Confidence 2 22224567777775
No 328
>PRK06541 hypothetical protein; Provisional
Probab=99.07 E-value=1.7e-08 Score=98.99 Aligned_cols=266 Identities=10% Similarity=0.019 Sum_probs=133.8
Q ss_pred CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHhhc---
Q 018231 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALL--- 133 (359)
Q Consensus 58 ~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~al~--- 133 (359)
-.|.|.+++.+.+.... ... .. .+. .+... .+.+++.+++..+.+ .+.++++++ |+..++....
T Consensus 69 ~~p~v~~Av~~q~~~~~-~~~-~~-~~~-~~~~~----~la~~l~~~~p~~~~----~v~f~~sGseAve~AlklAr~~~ 136 (460)
T PRK06541 69 GRAELAEAAAKQAGTLA-FFP-LW-SYA-HPPAI----ELAERLAALAPGDLN----RVFFTTGGSEAVESAWKLAKQYF 136 (460)
T ss_pred CCHHHHHHHHHHHhhCc-Ccc-cc-ccC-CHHHH----HHHHHHHHhCCCCcC----EEEEcCCcHHHHHHHHHHHHHHH
Confidence 46899999998876521 000 00 011 12122 245667776543222 366665555 8886665321
Q ss_pred --C---CCCeeeecCCCCCcccCccccc-----ccc--ceeeeeeeeEEEecccCC--CCCCCC--------HHHHHHHh
Q 018231 134 --K---PHDRIMALDLPHGGHLSHGYQT-----DTK--KISAVSIFFETMPYRLNE--STGYID--------YDQLEKSA 191 (359)
Q Consensus 134 --~---~Gd~Vl~~~~~~~~~~~~~~~~-----~~~--~~~~~g~~~~~v~~~~~~--~~~~~d--------~e~l~~~i 191 (359)
. ...+|+.....|.+...-.... ++. .....| +..++.+... ..+.-| ++.+++.+
T Consensus 137 ~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 214 (460)
T PRK06541 137 KLTGKPGKHKVISRAIAYHGTTQGALAITGLPAFKAPFEPLVPG--GFRVPNTNFYRAPELGDDPEAFGRWAADRIEEAI 214 (460)
T ss_pred HhcCCCCccEEEEEcCcccCcchhhhcCcCChhhccccCCCCCC--cEEeCCCccccccccCCCHHHHHHHHHHHHHHHH
Confidence 1 2467887776555542111100 000 000111 1122221100 001112 36677777
Q ss_pred hh---hCCcEEEEcC-CC-CCChhh----HHHHHHHHHHcCCEEEEeccc-cccccccC--CCCCCCCCceEEEeCCCCc
Q 018231 192 TL---FRPKLIVAGA-SA-YARLYD----YERIRKVCNKQKAIMLADMAH-ISGLVAAG--VIPSPFEYADVVTTTTHKS 259 (359)
Q Consensus 192 ~~---~~~k~v~l~~-~n-~g~~~~----l~~i~~la~~~~~~vivD~a~-~~g~~~~~--~~~~~~~~~D~v~~s~~K~ 259 (359)
.. .++.+|++.| .+ .|.+.+ +++|.++|++||+++|+|++| ++|..... ....+. ..|++++| |.
T Consensus 215 ~~~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~G~~~a~~~~gv-~PDivt~g--K~ 291 (460)
T PRK06541 215 EFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGEMFGCERFGY-VPDIITCA--KG 291 (460)
T ss_pred HhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchhhhhhhcCC-CCCEEEec--cc
Confidence 52 2345555554 23 565555 999999999999999999999 45543221 111111 26888865 99
Q ss_pred CCCC--CceEEEEeCCcchhccCCcchhhhHHHhhcccc---CCCCCCCCcHHHHHHHHHHHHHHhccccchhHhhhccc
Q 018231 260 LRGP--RGAMIFFRKGVKEINKQGKEVFYDYEEKINQAV---FPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLH 334 (359)
Q Consensus 260 l~gp--~gG~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~~l~ 334 (359)
+++. +-|++++++ ++.+.+.... ..+...+.|..+.++..++++.+.++...++.++..-.
T Consensus 292 l~~G~~pigav~~~~--------------~i~~~~~~~~~~~~~~~T~~gnp~~~aaala~l~~l~~~~~~~~~~~~g~~ 357 (460)
T PRK06541 292 ITSGYSPLGAMIASD--------------RLFEPFLDGPTMFLHGYTFGGHPVSAAVALANLDIFEREGLLDHVRDNEPA 357 (460)
T ss_pred ccCCccceeEEEEcH--------------HHHHHhhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 9753 347777766 3333332211 11112234556677777889888766544555444333
Q ss_pred cchhhhhcccCCCccccCCCC
Q 018231 335 VYPAFVSNQNNSENIEEDKGR 355 (359)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~ 355 (359)
...... .+....++++++|+
T Consensus 358 l~~~L~-~l~~~~~v~~vrg~ 377 (460)
T PRK06541 358 FRATLE-KLLDLPIVGDVRGD 377 (460)
T ss_pred HHHHHH-HhhcCCCeEEEEec
Confidence 332221 22223456666665
No 329
>PRK05639 4-aminobutyrate aminotransferase; Provisional
Probab=99.06 E-value=2.5e-08 Score=97.70 Aligned_cols=268 Identities=11% Similarity=0.035 Sum_probs=138.3
Q ss_pred CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHhh--cC
Q 018231 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTAL--LK 134 (359)
Q Consensus 58 ~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~al--~~ 134 (359)
-.|.|.+++.+.+.+.. +....++. .+... .+.+.+.+.+....+ .+.++++++ |+..++... ..
T Consensus 70 ~~p~i~~Ai~~ql~~~~---~~~~~~~~-~~~~~----~lae~L~~~~p~~~~----~v~f~~SGsEA~e~AlklAr~~t 137 (457)
T PRK05639 70 SHPKLVKAVQEQVALIQ---HSMIGYTH-SERAI----RVAEKLAEISPIENP----KVLFGLSGSDAVDMAIKVSKFST 137 (457)
T ss_pred CCHHHHHHHHHHHHhcc---ccccCccC-CHHHH----HHHHHHHhhCCCCcC----EEEEeCchHHHHHHHHHHHHHhc
Confidence 46899999988876521 11000111 11112 255677777653322 366665555 888766543 33
Q ss_pred CCCeeeecCCCCCcccCccc------cccccceeeeeeeeEEEecccCCC-CC----CCCH--------HHHHHHhh---
Q 018231 135 PHDRIMALDLPHGGHLSHGY------QTDTKKISAVSIFFETMPYRLNES-TG----YIDY--------DQLEKSAT--- 192 (359)
Q Consensus 135 ~Gd~Vl~~~~~~~~~~~~~~------~~~~~~~~~~g~~~~~v~~~~~~~-~~----~~d~--------e~l~~~i~--- 192 (359)
...+|+.....|.+...-.. ..++....-.-..+..+|++.... .+ .-|. +.+++.+.
T Consensus 138 gr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~ 217 (457)
T PRK05639 138 RRPWILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLMPNVVWIPYPNPYRNPWGINGYEEPDELINRFLDYLENYVFSHV 217 (457)
T ss_pred CCCeEEEECCCcCCccHHHHHHcCCCcccccCCCCCCCCceEeCCCccccccccccccCCHHHHHHHHHHHHHHHHHHhh
Confidence 44678777655555321000 000100000000122344321100 00 0122 23454442
Q ss_pred --hhCCcEEEEcCCC--CCCh----hhHHHHHHHHHHcCCEEEEeccccccccccCC----CCCCCCCceEEEeCCCCcC
Q 018231 193 --LFRPKLIVAGASA--YARL----YDYERIRKVCNKQKAIMLADMAHISGLVAAGV----IPSPFEYADVVTTTTHKSL 260 (359)
Q Consensus 193 --~~~~k~v~l~~~n--~g~~----~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~----~~~~~~~~D~v~~s~~K~l 260 (359)
..++.+|++.|-. .|.+ .-+++|.++|++||+++|.|++|+ |.-..+. ...+. ..|+++++ |.+
T Consensus 218 ~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~t-G~GrtG~~~a~~~~gv-~PDiv~~g--K~l 293 (457)
T PRK05639 218 VPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQT-GIGRTGKWFASEWFEV-KPDLIIFG--KGV 293 (457)
T ss_pred cCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-ccCcCchHHHHHhcCC-CCCEEEec--hhh
Confidence 2356777776332 3432 238899999999999999999996 3211110 11111 26999965 999
Q ss_pred CCCCc-eEEEEeCCcchhccCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhccccchhHhhhccccchhh
Q 018231 261 RGPRG-AMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAF 339 (359)
Q Consensus 261 ~gp~g-G~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~~l~~~~~~ 339 (359)
++..+ |++++++ ++.+..... .-..+ ..|....+|..++|+.+.++...++.+...-+.....
T Consensus 294 ~gG~pi~av~~~~--------------~i~~~~~~~-~~~T~-~g~p~~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L 357 (457)
T PRK05639 294 ASGMGLSGVIGRK--------------ELMDLTSGS-ALLTP-AANPVISAAAEATLEIIEEENLLKNALKVGEFIKKRL 357 (457)
T ss_pred cCCCcceeEEehH--------------HHHhhcCCC-cccCC-CcCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 75444 8888887 333321111 11122 2345566777788999987765666666543333333
Q ss_pred hhcccCCCccccCCCCCC
Q 018231 340 VSNQNNSENIEEDKGRPC 357 (359)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~ 357 (359)
...+.....+++++|+.+
T Consensus 358 ~~l~~~~~~~~~VrG~Gl 375 (457)
T PRK05639 358 LEMKESFEVIGDVRGKGL 375 (457)
T ss_pred HHHHHhCCCEEeecccee
Confidence 222344567888888764
No 330
>PRK09792 4-aminobutyrate transaminase; Provisional
Probab=99.06 E-value=2e-08 Score=97.55 Aligned_cols=269 Identities=10% Similarity=0.050 Sum_probs=135.4
Q ss_pred CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCC-CCCCceeEEECCChHHHHHHHHhh--cC
Q 018231 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLD-PEKWGVNVQSLSGSPSNFQVYTAL--LK 134 (359)
Q Consensus 58 ~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~-~~~~~~~v~~tsG~~a~~~~~~al--~~ 134 (359)
-.|.+.+++.+.+.... +.....+. .+.. + .+.+.+.+.+... .+. .++.+||+.|+..++... ..
T Consensus 57 ~~p~v~~ai~~ql~~~~---~~~~~~~~-~~~~--~--~la~~l~~~~p~~~~~~---~~f~~sGseA~e~AlklAr~~t 125 (421)
T PRK09792 57 RHPDLVAAVEQQLQQFT---HTAYQIVP-YESY--V--TLAEKINALAPVSGQAK---TAFFTTGAEAVENAVKIARAHT 125 (421)
T ss_pred CCHHHHHHHHHHHHhcc---CcccCccC-CHHH--H--HHHHHHHHhCCCCCCce---EEEeCChHHHHHHHHHHHHHhc
Confidence 47899999988876521 11110011 1111 1 2446676665421 122 244455555888666543 23
Q ss_pred CCCeeeecCCCCCcccCcccc------ccccceeeeeeeeEEEecccCCCCC--CCCHHHHHHHhhh----hCCcEEEEc
Q 018231 135 PHDRIMALDLPHGGHLSHGYQ------TDTKKISAVSIFFETMPYRLNESTG--YIDYDQLEKSATL----FRPKLIVAG 202 (359)
Q Consensus 135 ~Gd~Vl~~~~~~~~~~~~~~~------~~~~~~~~~g~~~~~v~~~~~~~~~--~~d~e~l~~~i~~----~~~k~v~l~ 202 (359)
...+|+.....|.+...-... .++......-..+..++++.+.... .-+++.+++.+.+ .++++|++.
T Consensus 126 gr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~iaavi~E 205 (421)
T PRK09792 126 GRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPYPSDLHGISTQDSLDAIERLFKSDIEAKQVAAIIFE 205 (421)
T ss_pred CCCeEEEECCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhccCCCceEEEEEc
Confidence 345788777665554210000 0111100000012334443321110 1135778887752 356788887
Q ss_pred CCC--CCC-hhh---HHHHHHHHHHcCCEEEEeccccc-ccccc--CCCCCCCCCceEEEeCCCCcCCC-CCceEEEEeC
Q 018231 203 ASA--YAR-LYD---YERIRKVCNKQKAIMLADMAHIS-GLVAA--GVIPSPFEYADVVTTTTHKSLRG-PRGAMIFFRK 272 (359)
Q Consensus 203 ~~n--~g~-~~~---l~~i~~la~~~~~~vivD~a~~~-g~~~~--~~~~~~~~~~D~v~~s~~K~l~g-p~gG~l~~~~ 272 (359)
|.. .|. ..| +++|.++|++||+++|+|+++.. |.... .....+ ...|++++| |.+++ .+-|++++++
T Consensus 206 Pvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~-~~pDi~t~g--K~l~~G~pigav~~~~ 282 (421)
T PRK09792 206 PVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKLFAMDHYA-DKPDLMTMA--KSLAGGMPLSGVVGNA 282 (421)
T ss_pred cccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHhcC-CCCcEEEee--hhhcCCCceEEEEEcH
Confidence 433 453 224 88999999999999999999862 22110 011111 126877765 99864 3338888877
Q ss_pred CcchhccCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhccccchhHhhhccccchhhhhcccCCCccccC
Q 018231 273 GVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSENIEED 352 (359)
Q Consensus 273 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 352 (359)
++.+.+........+ +.|....+|..++++++.++....+.+.+.-+.....-.-......++++
T Consensus 283 --------------~i~~~~~~~~~~~T~-~gnpl~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~l~~l~~~~p~v~~v 347 (421)
T PRK09792 283 --------------NIMDAPAPGGLGGTY-AGNPLAVAAAHAVLNIIDKESLCERANQLGQRLKNTLIDAKESVPAIAAV 347 (421)
T ss_pred --------------HHHhccCCCCcCCCC-CCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhCCCccee
Confidence 444444322222223 34455666777788888776444555544322222111112223446677
Q ss_pred CCC
Q 018231 353 KGR 355 (359)
Q Consensus 353 ~~~ 355 (359)
+|+
T Consensus 348 rG~ 350 (421)
T PRK09792 348 RGL 350 (421)
T ss_pred ccc
Confidence 775
No 331
>PRK05769 4-aminobutyrate aminotransferase; Provisional
Probab=99.05 E-value=3e-08 Score=96.84 Aligned_cols=266 Identities=13% Similarity=0.028 Sum_probs=134.9
Q ss_pred CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHhh--cC
Q 018231 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTAL--LK 134 (359)
Q Consensus 58 ~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~al--~~ 134 (359)
-.|.|.+++.+.+.... +.....+. .+.+..+.+++.+.+.....+ .|.++++++ |+..++... ..
T Consensus 71 ~~p~v~~Ai~~ql~~~~---~~~~~~~~-----~~~~~~lAe~L~~~~p~~~~~---~v~f~~SGsEA~e~AlklAr~~t 139 (441)
T PRK05769 71 AHPKVVKAVKEQAEKFL---HYSLTDFY-----YEPAVELAERLVEIAPGGFEK---KVFFTNSGTESNEAAIKIARYHT 139 (441)
T ss_pred CCHHHHHHHHHHHHhcc---CccCcccC-----CHHHHHHHHHHHHhCCCCCCC---EEEECCchHHHHHHHHHHHHHHh
Confidence 36899999998876521 11000011 111222557777776421111 477776666 888766533 23
Q ss_pred CCCeeeecCCCCCcccCcccc------ccccc--eeeeeeeeEEEecccCC-CCCC---------CCHHHHHH-Hhh---
Q 018231 135 PHDRIMALDLPHGGHLSHGYQ------TDTKK--ISAVSIFFETMPYRLNE-STGY---------IDYDQLEK-SAT--- 192 (359)
Q Consensus 135 ~Gd~Vl~~~~~~~~~~~~~~~------~~~~~--~~~~g~~~~~v~~~~~~-~~~~---------~d~e~l~~-~i~--- 192 (359)
..++|+.....|.+...-... .++.. ....+ +..++++... ..+. -+++.+++ .++
T Consensus 140 gr~~Ii~~~~~yHG~t~~~ls~t~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~ 217 (441)
T PRK05769 140 GRKYIIAFLGAFHGRTYGSLSLTASKPVQRKGFFPLMPG--VIHVPYPNPYRNPWGIENPEECGNAVLDFIEDYLFKKLV 217 (441)
T ss_pred CCCeEEEECCCcCCccHHHHHhcCCCcccccCCCCCCCC--eEEeCCCccccccccCCchHHHHHHHHHHHHHHHHhhcc
Confidence 446788776555544210000 00000 00112 2223321100 0000 01344555 222
Q ss_pred -hhCCcEEEEcC--CCCCChhh----HHHHHHHHHHcCCEEEEecccc-ccccccC--CCCCCCCCceEEEeCCCCcCCC
Q 018231 193 -LFRPKLIVAGA--SAYARLYD----YERIRKVCNKQKAIMLADMAHI-SGLVAAG--VIPSPFEYADVVTTTTHKSLRG 262 (359)
Q Consensus 193 -~~~~k~v~l~~--~n~g~~~~----l~~i~~la~~~~~~vivD~a~~-~g~~~~~--~~~~~~~~~D~v~~s~~K~l~g 262 (359)
..++.+|++.| ++.|.+.+ +++|.++|++||+++|+|++|+ +|..... ....+. ..|++++| |.+++
T Consensus 218 ~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr~G~~~a~~~~gv-~pDivt~~--K~l~~ 294 (441)
T PRK05769 218 PPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGKMFAIEHFGV-EPDIITLA--KAIAG 294 (441)
T ss_pred CCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccceehhhccCC-CCCEEEEc--ccccC
Confidence 22466777653 33566555 9999999999999999999987 2222110 111111 25888876 98864
Q ss_pred C-CceEEEEeCCcchhccCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhccccchhHhhhccccchhhhh
Q 018231 263 P-RGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVS 341 (359)
Q Consensus 263 p-~gG~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~~l~~~~~~~~ 341 (359)
. +.|+++++++ +.+... ......++ .+..+.++..++|+.+.+ ....+.++..-+.......
T Consensus 295 G~p~gav~~~~~--------------i~~~~~-~~~~~T~~-g~p~~~aaa~a~L~~l~~-~~~~~~~~~g~~l~~~L~~ 357 (441)
T PRK05769 295 GLPLGAVIGRAE--------------LMFLPP-GSHANTFG-GNPVAAAAALATLEELEE-GLLENAQKLGEYLRKELKE 357 (441)
T ss_pred CcccEEEEEehh--------------hhhcCC-CCCCCCCC-cCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 3 3488888773 322211 11112222 255667777788998876 5555655554333333221
Q ss_pred cccCCCccccCCCCC
Q 018231 342 NQNNSENIEEDKGRP 356 (359)
Q Consensus 342 ~~~~~~~~~~~~~~~ 356 (359)
-..+...+++++|+.
T Consensus 358 l~~~~~~~~~vrg~G 372 (441)
T PRK05769 358 LKEKYEFIGDVRGLG 372 (441)
T ss_pred HHHhCCCeeeeecce
Confidence 123345677777764
No 332
>PRK06082 4-aminobutyrate aminotransferase; Provisional
Probab=99.04 E-value=3.5e-08 Score=96.77 Aligned_cols=267 Identities=12% Similarity=0.063 Sum_probs=138.1
Q ss_pred CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHhh--cC
Q 018231 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTAL--LK 134 (359)
Q Consensus 58 ~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~al--~~ 134 (359)
-.|.|.+++.+.+.. +... .. .+. .+... .+.+++.+++....+ .+.|+++++ ++..++... ..
T Consensus 88 ~~p~v~~Ai~~ql~~-~~~~--~~-~~~-~~~~~----~lae~L~~~~p~~~~----~v~f~~sGseAve~AlklAr~~t 154 (459)
T PRK06082 88 GHPHVIEKVKEQMAK-LPFS--PR-RFT-NETAI----ECAEKLTEIAGGELN----RVLFAPGGTSAIGMALKLARHIT 154 (459)
T ss_pred CCHHHHHHHHHHHHh-CCCc--cC-ccC-CHHHH----HHHHHHHHhCCCCCC----EEEECCCcHHHHHHHHHHHHHhc
Confidence 478999999888765 2111 11 111 12222 255778887753222 377776666 888665533 23
Q ss_pred CCCeeeecCCCCCcccCccc-----cccccc--eeeeeeeeEEEecccCCC-CC-CC------CHHHHHHHhhh-hCCcE
Q 018231 135 PHDRIMALDLPHGGHLSHGY-----QTDTKK--ISAVSIFFETMPYRLNES-TG-YI------DYDQLEKSATL-FRPKL 198 (359)
Q Consensus 135 ~Gd~Vl~~~~~~~~~~~~~~-----~~~~~~--~~~~g~~~~~v~~~~~~~-~~-~~------d~e~l~~~i~~-~~~k~ 198 (359)
...+|+.....|.+...-.. ..++.. ....+ +..++.+.... .+ .. +++.+++.+.. .++.+
T Consensus 155 gr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~vAa 232 (459)
T PRK06082 155 GNFKVVSLWDSFHGASLDAISVGGEACFRQGMGPLMAG--VERIPPAVSYRGAFPDADGSDVHYADYLEYVIEKEGGIGA 232 (459)
T ss_pred CCCEEEEEeCCCcCccHHHHhhcCCcccccCCCCCCCC--CEEeCCCcccccccCChhHHHHHHHHHHHHHHhcCCCEEE
Confidence 34678877655544321000 000000 00011 12222111000 00 01 13557777752 24566
Q ss_pred EEEcCCC-CC-Chhh---HHHHHHHHHHcCCEEEEeccccc-cccccC--CCCCCCCCceEEEeCCCCcCCCC--CceEE
Q 018231 199 IVAGASA-YA-RLYD---YERIRKVCNKQKAIMLADMAHIS-GLVAAG--VIPSPFEYADVVTTTTHKSLRGP--RGAMI 268 (359)
Q Consensus 199 v~l~~~n-~g-~~~~---l~~i~~la~~~~~~vivD~a~~~-g~~~~~--~~~~~~~~~D~v~~s~~K~l~gp--~gG~l 268 (359)
|++.|.. .| ...| +++|.++|++||+++|.|++|+. |..... ....+. ..|+++++ |.++|. +-|++
T Consensus 233 vIvEPv~g~g~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~fa~e~~gv-~PDiv~~g--Kgl~gG~~P~~av 309 (459)
T PRK06082 233 FIAEAVRNTDVQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGEWFTHQAYGI-EPDILCIG--KGLGGGLVPIAAM 309 (459)
T ss_pred EEECCccCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHhHhhCC-CCCEEEec--ccccCCCCcceEE
Confidence 6665332 33 2233 89999999999999999999862 222110 011111 26999865 999764 34777
Q ss_pred EEeCCcchhccCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhccccchhHhhhccccchhhhhcccCCCc
Q 018231 269 FFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSEN 348 (359)
Q Consensus 269 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 348 (359)
++++ ++...+........+ +.|..+.+|..++|+.+.++...++.++..-+.......-......
T Consensus 310 ~~~~--------------~i~~~~~~~~~~~T~-~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~ 374 (459)
T PRK06082 310 ITKD--------------KYNTAAQISLGHYTH-EKSPLGCAAALATIEVIEQEGLLEKVKADSQFMRERLLEMKAKYPL 374 (459)
T ss_pred EEcH--------------HHHhhccCCCCCCCC-CcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 7776 332222111111122 3455667777788998887655566655544433333222334467
Q ss_pred cccCCCCCC
Q 018231 349 IEEDKGRPC 357 (359)
Q Consensus 349 ~~~~~~~~~ 357 (359)
+++++|+..
T Consensus 375 i~~vrG~Gl 383 (459)
T PRK06082 375 IGDVRGIGL 383 (459)
T ss_pred eeeeeeccc
Confidence 888888754
No 333
>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.04 E-value=3.2e-08 Score=96.86 Aligned_cols=267 Identities=7% Similarity=-0.030 Sum_probs=141.7
Q ss_pred CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCC-hHHHHHHHHhhc---
Q 018231 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSG-SPSNFQVYTALL--- 133 (359)
Q Consensus 58 ~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG-~~a~~~~~~al~--- 133 (359)
-.|.|.+++.+.+.... .... ..+. .+ ..+ .+.+++.+.++..-+ .++|+++ +.|+..++....
T Consensus 71 ~~p~v~~Ai~~ql~~~~-~~~~--~~~~-~~--~~~--~lAe~L~~~~p~~~~----~v~f~~sGseAve~AlKlA~~~~ 138 (453)
T PRK06943 71 ANPRINAALKDQLDTLE-HAML--AGCT-HE--PAI--ELAERLAALTGGTLG----HAFFASDGASAVEIALKMSFHAW 138 (453)
T ss_pred CCHHHHHHHHHHHHhcC-Cccc--cccC-CH--HHH--HHHHHHHHhCCCCCC----EEEEeCCCHHHHHHHHHHHHHHH
Confidence 47999999988876521 0100 0011 11 122 255777777654322 3676654 448887666431
Q ss_pred ----C-CCCeeeecCCCCCcccCcccc-----cccc--ceeeeeeeeEEEecccCCC-CC--------CCCHHHHHHHhh
Q 018231 134 ----K-PHDRIMALDLPHGGHLSHGYQ-----TDTK--KISAVSIFFETMPYRLNES-TG--------YIDYDQLEKSAT 192 (359)
Q Consensus 134 ----~-~Gd~Vl~~~~~~~~~~~~~~~-----~~~~--~~~~~g~~~~~v~~~~~~~-~~--------~~d~e~l~~~i~ 192 (359)
. ...+|+.....|.+...-... .++. ...+.+ +..++.+.... .. .-|++++++.+.
T Consensus 139 ~~rg~~~r~~Ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~l~ 216 (453)
T PRK06943 139 RNRGRGDKREFVCLANGYHGETIGALGVTDVALFKDAYDPLIRH--AHVVASPDARGARPGETAADVAARALADVRRLFA 216 (453)
T ss_pred HHhCCCCCCEEEEECCCcCCCcHHhhcccCChhhhcccccCCCC--CEEECCCCccccccCCCHHHHHHHHHHHHHHHHH
Confidence 1 236788887666554210000 0000 000011 11232221100 00 013567777775
Q ss_pred h--hCCcEEEEcCC--C-CCC----hhhHHHHHHHHHHcCCEEEEecccc-ccccccC--CCCCCCCCceEEEeCCCCcC
Q 018231 193 L--FRPKLIVAGAS--A-YAR----LYDYERIRKVCNKQKAIMLADMAHI-SGLVAAG--VIPSPFEYADVVTTTTHKSL 260 (359)
Q Consensus 193 ~--~~~k~v~l~~~--n-~g~----~~~l~~i~~la~~~~~~vivD~a~~-~g~~~~~--~~~~~~~~~D~v~~s~~K~l 260 (359)
. .++.+|++.|- . .|. ..-++++.++|++||+++|.|++++ +|....- ....+. ..|+++++ |.+
T Consensus 217 ~~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG~~fa~~~~gv-~PDivt~g--Kgl 293 (453)
T PRK06943 217 ERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGTFFACEQAGV-WPDFLCLS--KGI 293 (453)
T ss_pred hCCCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCCcchhHHHhCCC-CCCeEeee--hhh
Confidence 2 25677777652 2 342 2248899999999999999999985 3432210 011111 26999997 998
Q ss_pred CCC--CceEEEEeCCcchhccCCcchhhhHHHhhcccc-----CCCCCCCCcHHHHHHHHHHHHHHhccccchhHhhhcc
Q 018231 261 RGP--RGAMIFFRKGVKEINKQGKEVFYDYEEKINQAV-----FPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSL 333 (359)
Q Consensus 261 ~gp--~gG~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~~~~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~~l 333 (359)
+|. +-|++++++ ++.+.+.... ..+...+.|..+.++..++|+.+.++...++.++..-
T Consensus 294 ~gG~~Pi~av~~~~--------------ei~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~l~~~~~~~G~ 359 (453)
T PRK06943 294 SGGYLPLSLVLSRD--------------AIFAAFYDDDVTRGFLHSHSYTGNPLACRAALATLDLFAEDDVLARNARKSA 359 (453)
T ss_pred ccCcccceEEEEcH--------------HHHHhhcccCccCCccCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 765 348888887 3333332110 1111123466777888888999988766676666644
Q ss_pred ccchhhhhcccCCCccccCCCCC
Q 018231 334 HVYPAFVSNQNNSENIEEDKGRP 356 (359)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~ 356 (359)
+.......-. ....+++++|+-
T Consensus 360 ~l~~~L~~l~-~~~~v~~vrG~G 381 (453)
T PRK06943 360 RLRAALAPLA-AHPQVRHLRQRG 381 (453)
T ss_pred HHHHHHHHHh-cCCCEEeEeccc
Confidence 4433332212 235677787763
No 334
>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=99.03 E-value=3.7e-08 Score=95.76 Aligned_cols=245 Identities=11% Similarity=0.095 Sum_probs=131.3
Q ss_pred cCceeeCCCC-----CCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCC
Q 018231 47 KGLELIPSEN-----FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSG 121 (359)
Q Consensus 47 ~~i~l~~~~~-----~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG 121 (359)
..|++..+-. .-.|.|.+++.+.+.... .+ .+. .+ ... .+.+++.+.++...+ .|.++++
T Consensus 54 ~yiD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~--~~----~~~-~~--~~~--~la~~L~~~~~~~~~----~v~f~~S 118 (433)
T PRK00615 54 TFIDFCGSWGSLIHGHSHPKICDAIQQGAERGT--SY----GLT-SE--QEI--LFAEELFSYLGLEDH----KIRFVSS 118 (433)
T ss_pred EEEEcccchhccccCCCCHHHHHHHHHHHHhCC--CC----CCC-CH--HHH--HHHHHHHHhCCCCcC----EEEEeCc
Confidence 3466654322 247999999988876521 00 011 11 122 255677777654322 3666655
Q ss_pred hH-HHHHHHHhh--cCCCCeeeecCCCCCcccCc-ccc--ccccc----eeeeeee---eEEEecccCCCCCCCCHHHHH
Q 018231 122 SP-SNFQVYTAL--LKPHDRIMALDLPHGGHLSH-GYQ--TDTKK----ISAVSIF---FETMPYRLNESTGYIDYDQLE 188 (359)
Q Consensus 122 ~~-a~~~~~~al--~~~Gd~Vl~~~~~~~~~~~~-~~~--~~~~~----~~~~g~~---~~~v~~~~~~~~~~~d~e~l~ 188 (359)
++ |+..++... .....+|+.....|.+.... ... .-... ....+.. ...+.++ .-|+++++
T Consensus 119 GsEA~e~AiklAr~~tgr~~ii~~~~~yHG~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~d~~~l~ 192 (433)
T PRK00615 119 GTEATMTAVRLARGITGRSIIIKFLGCYHGHADTLLQGISFSETSLDTLTHLVDTDLAHPLTLSLP------YNDFQIFQ 192 (433)
T ss_pred hHHHHHHHHHHHHHhhCCCEEEEEcCccCCCCcccCcccccCCCCcCcCCCCCCCCCCCCCeEeCC------CCCHHHHH
Confidence 55 888766543 23346777777666554211 000 00000 0000000 0001111 12788898
Q ss_pred HHhhhh--CCcEEEEc--CCCCCChhh----HHHHHHHHHHcCCEEEEeccccccccccCC----CCCCCCCceEEEeCC
Q 018231 189 KSATLF--RPKLIVAG--ASAYARLYD----YERIRKVCNKQKAIMLADMAHISGLVAAGV----IPSPFEYADVVTTTT 256 (359)
Q Consensus 189 ~~i~~~--~~k~v~l~--~~n~g~~~~----l~~i~~la~~~~~~vivD~a~~~g~~~~~~----~~~~~~~~D~v~~s~ 256 (359)
+.+.+. ++.+|++. .++.|.+.| +++|.++|++||+++|+|++|. |. -.+. ...+. ..|+++++
T Consensus 193 ~~l~~~~~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~t-G~-R~G~~ga~~~~gv-~PDi~~~g- 268 (433)
T PRK00615 193 TVMNSLGHRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVT-GF-RVAQGGAAAIYHV-KPDITVYG- 268 (433)
T ss_pred HHHHhcCCceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccc-cc-cccHhHHHHhcCC-CCCeEEEc-
Confidence 888642 45566665 333454444 6799999999999999999994 44 1110 11111 26888865
Q ss_pred CCcCCC-CCceEEEEeCCcchhccCCcchhhhHHHhhccccCCCCCCC--CcHHHHHHHHHHHHHHhccccchhHhhh
Q 018231 257 HKSLRG-PRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGG--PHNHTITGLAVALKQVCTLITFSHIHVF 331 (359)
Q Consensus 257 ~K~l~g-p~gG~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gt--~~~~~i~al~~Al~~~~~~~~~~~~~~~ 331 (359)
|.++| .++|++++++ ++.+.+.........+| .+....+|..++|+.+.++...++.++.
T Consensus 269 -K~lggG~p~~av~~~~--------------~i~~~~~~~~~~~~~~T~~g~p~~~aa~la~L~~i~~~~~~~~~~~~ 331 (433)
T PRK00615 269 -KILGGGLPAAAVVAHK--------------SIMDHLAPEGTIFQAGTLSGNPLAMAAGKASINLCREQGFYTQLSTL 331 (433)
T ss_pred -ccccCCcceeeeeecH--------------HHHhhhcCCCCcccCCCCcccHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 99974 3468888887 44444422111011123 4667788888999988765444444443
No 335
>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase
Probab=99.02 E-value=4.6e-08 Score=95.99 Aligned_cols=234 Identities=15% Similarity=0.082 Sum_probs=125.8
Q ss_pred CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHhh--cC
Q 018231 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTAL--LK 134 (359)
Q Consensus 58 ~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~al--~~ 134 (359)
-+|.|.+++.+.+......+ . ....+. .+.+++.+.+.. .+ .+.|+++++ |+..++... ..
T Consensus 116 ~~p~v~~av~~ql~~~~~~~-------~--~~~~~~--~lAe~l~~~~p~-~~----~v~f~~SGsEA~e~AlklAR~~t 179 (474)
T PLN02482 116 ADDEVLAALAETMKKGTSFG-------A--PCLLEN--VLAEMVIDAVPS-VE----MVRFVNSGTEACMGVLRLARAYT 179 (474)
T ss_pred CCHHHHHHHHHHHhhCCCCC-------C--CCHHHH--HHHHHHHHhCCC-CC----EEEEeCChHHHHHHHHHHHHHhc
Confidence 36899999998887522101 1 111122 255677776642 22 377766555 888666543 23
Q ss_pred CCCeeeecCCCCCcccCccccccccc------eeeeeeee----EEEecccCCCCCCCCHHHHHHHhhhh--CCcEEEEc
Q 018231 135 PHDRIMALDLPHGGHLSHGYQTDTKK------ISAVSIFF----ETMPYRLNESTGYIDYDQLEKSATLF--RPKLIVAG 202 (359)
Q Consensus 135 ~Gd~Vl~~~~~~~~~~~~~~~~~~~~------~~~~g~~~----~~v~~~~~~~~~~~d~e~l~~~i~~~--~~k~v~l~ 202 (359)
..++|+...-.|.+...........+ ....+... ..+.++.+ |++.+++.+.++ ++.+|++.
T Consensus 180 gr~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~n------d~~~l~~~l~~~~~~iAavI~E 253 (474)
T PLN02482 180 GREKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAPYN------DLEAVKKLFEANKGEIAAVILE 253 (474)
T ss_pred CCCEEEEECCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEecCC------ChHHHHHHHHhCCCceEEEEEC
Confidence 44678877766655431100000000 00001000 00111111 789999888642 45666665
Q ss_pred --CCCCCChhh----HHHHHHHHHHcCCEEEEeccccccccccCC---CCCCCCCceEEEeCCCCcCCCC-CceEEEEeC
Q 018231 203 --ASAYARLYD----YERIRKVCNKQKAIMLADMAHISGLVAAGV---IPSPFEYADVVTTTTHKSLRGP-RGAMIFFRK 272 (359)
Q Consensus 203 --~~n~g~~~~----l~~i~~la~~~~~~vivD~a~~~g~~~~~~---~~~~~~~~D~v~~s~~K~l~gp-~gG~l~~~~ 272 (359)
.++.|.+.| +++|.++|++||+++|+|++|. |...... ...+. ..|+++++ |.++|. +-|+++.++
T Consensus 254 pv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~t-GfR~g~~ga~~~~gv-~PDi~t~g--K~lggG~Pigav~g~~ 329 (474)
T PLN02482 254 PVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMT-GFRIAYGGAQEYFGI-TPDLTTLG--KVIGGGLPVGAYGGRR 329 (474)
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CeecCcchHhHHhCC-CCCEEEec--chhhCCCceEEEEEcH
Confidence 344554433 7789999999999999999994 5421100 00111 26888775 999653 236667776
Q ss_pred CcchhccCCcchhhhHHHhhccccCCCCCCC--CcHHHHHHHHHHHHHHhccccchhHhhh
Q 018231 273 GVKEINKQGKEVFYDYEEKINQAVFPGLQGG--PHNHTITGLAVALKQVCTLITFSHIHVF 331 (359)
Q Consensus 273 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gt--~~~~~i~al~~Al~~~~~~~~~~~~~~~ 331 (359)
++.+.+.........+| .|....+|..++|+.+.++...++.+..
T Consensus 330 --------------ei~~~~~~~~~~~~~~T~~gnpl~~aAala~L~~l~~~~~~~~~~~~ 376 (474)
T PLN02482 330 --------------EIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLQQPGTYEYLDKI 376 (474)
T ss_pred --------------HHHHhhccCCCcccccCcchhHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 44544432110011133 4566677777889988776545554444
No 336
>PRK08088 4-aminobutyrate aminotransferase; Validated
Probab=99.02 E-value=2.5e-08 Score=97.04 Aligned_cols=246 Identities=13% Similarity=0.036 Sum_probs=124.0
Q ss_pred CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhh--cCC
Q 018231 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL--LKP 135 (359)
Q Consensus 58 ~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al--~~~ 135 (359)
-+|.+.+++.+.+.+ . .+.....+.. . ..+ .+.+++.+..+.+... ..++.+||+.++..++... ...
T Consensus 58 ~~~~i~~a~~~~~~~-~--~~~~~~~~~~-~--~~~--~la~~l~~~~~~~~~~--~~~f~~sGsea~e~Alklar~~~~ 127 (425)
T PRK08088 58 LHPKVVAAVEAQLKK-L--SHTCFQVLAY-E--PYL--ELCEKMNQKVPGDFAK--KTLLVTTGSEAVENAVKIARAATK 127 (425)
T ss_pred CCHHHHHHHHHHHhh-C--CCccccccCC-H--HHH--HHHHHHHHhCCCCCCC--EEEEeCCcHHHHHHHHHHHHHHhC
Confidence 378999999888775 2 1111100111 1 122 2556777776643211 2466677777666555433 233
Q ss_pred CCeeeecCCCCCcccCccccc------cccceeeeeeeeEEEecccCCCCCCC--CHHHHHHHhh----hhCCcEEEEcC
Q 018231 136 HDRIMALDLPHGGHLSHGYQT------DTKKISAVSIFFETMPYRLNESTGYI--DYDQLEKSAT----LFRPKLIVAGA 203 (359)
Q Consensus 136 Gd~Vl~~~~~~~~~~~~~~~~------~~~~~~~~g~~~~~v~~~~~~~~~~~--d~e~l~~~i~----~~~~k~v~l~~ 203 (359)
...|+.....|.+........ +..+....-..+..++++.+..+... +++++++.+. ..+.+++++.|
T Consensus 128 r~~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~aavi~Ep 207 (425)
T PRK08088 128 RSGVIAFTGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGVSEDDAIASIERIFKNDAAPEDIAAIIIEP 207 (425)
T ss_pred CCeEEEECCccCCccHHHHHhhCCCCccccCCCCCCCCcEEcCCCccccCccHHHHHHHHHHHHHhccCCCceEEEEECc
Confidence 455666676655543111110 00000000000111222222111111 1556888775 23566777763
Q ss_pred CC-C-CCh----hhHHHHHHHHHHcCCEEEEeccccccccccC-CCCC-CCC-CceEEEeCCCCcCCC-CCceEEEEeCC
Q 018231 204 SA-Y-ARL----YDYERIRKVCNKQKAIMLADMAHISGLVAAG-VIPS-PFE-YADVVTTTTHKSLRG-PRGAMIFFRKG 273 (359)
Q Consensus 204 ~n-~-g~~----~~l~~i~~la~~~~~~vivD~a~~~g~~~~~-~~~~-~~~-~~D~v~~s~~K~l~g-p~gG~l~~~~~ 273 (359)
.. . |.. ..+++|.++|+++|+++|.|++++. ....+ .... ... ..|+.++ +|.+++ .+-|+++.++
T Consensus 208 i~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g-~g~~g~~~~~~~~~~~pdi~s~--sK~l~~G~rig~v~~~~- 283 (425)
T PRK08088 208 VQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTG-AGRTGTLFAMEQMGVAADLTTF--AKSIAGGFPLAGVTGRA- 283 (425)
T ss_pred ccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccC-CCcCcchhHHhhcCCCCCEEEE--eccccCCCcceeeEecH-
Confidence 33 2 332 3488999999999999999999862 21111 1000 001 2465555 599853 2238899877
Q ss_pred cchhccCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhccccchhHhhh
Q 018231 274 VKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVF 331 (359)
Q Consensus 274 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~ 331 (359)
++.+.+........ .+.+....+++.+.++.+..+...++.+..
T Consensus 284 -------------~~~~~~~~~~~~~t-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~ 327 (425)
T PRK08088 284 -------------EVMDAIAPGGLGGT-YAGNPIACAAALAVLKVFEQENLLQKANAL 327 (425)
T ss_pred -------------HHHhhcCCCCCCCC-CCcCHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 45555433222222 234556677777888877655444455544
No 337
>PRK09221 beta alanine--pyruvate transaminase; Provisional
Probab=99.02 E-value=4.5e-08 Score=95.61 Aligned_cols=154 Identities=16% Similarity=0.146 Sum_probs=87.2
Q ss_pred HHHHHHHhhh---hCCcEEEEc--CCCCCChhh----HHHHHHHHHHcCCEEEEecccc-cccccc--CCCCCCCCCceE
Q 018231 184 YDQLEKSATL---FRPKLIVAG--ASAYARLYD----YERIRKVCNKQKAIMLADMAHI-SGLVAA--GVIPSPFEYADV 251 (359)
Q Consensus 184 ~e~l~~~i~~---~~~k~v~l~--~~n~g~~~~----l~~i~~la~~~~~~vivD~a~~-~g~~~~--~~~~~~~~~~D~ 251 (359)
.+++++.+.. .++.+|++. .++.|.+.+ +++|.++|++||+++|+|++|+ +|.... .....+. ..|+
T Consensus 204 ~~~l~~~i~~~~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~~~~~~gv-~PDi 282 (445)
T PRK09221 204 ADDLERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAAFAAERFGV-TPDI 282 (445)
T ss_pred HHHHHHHHHhcCCCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcCchhhHHHhcCC-CCCE
Confidence 3567777753 245677775 333566666 9999999999999999999984 332211 1111111 2488
Q ss_pred EEeCCCCcCCCC--CceEEEEeCCcchhccCCcchhhhHHHhhccc------cCC-CCCCCCcHHHHHHHHHHHHHHhcc
Q 018231 252 VTTTTHKSLRGP--RGAMIFFRKGVKEINKQGKEVFYDYEEKINQA------VFP-GLQGGPHNHTITGLAVALKQVCTL 322 (359)
Q Consensus 252 v~~s~~K~l~gp--~gG~l~~~~~~~~~~~~g~~~~~~~~~~~~~~------~~~-~~~gt~~~~~i~al~~Al~~~~~~ 322 (359)
++++ |.+++. +.|++++++ ++.+.+... ... ..++ .|..+.++..++|+.+.++
T Consensus 283 ~~~g--K~l~gG~~Pi~av~~~~--------------~i~~~~~~~~~~~~~~~~~~T~~-~~pl~~aaa~a~L~~i~~~ 345 (445)
T PRK09221 283 ITFA--KGLTNGAIPMGAVIASD--------------EIYDAFMQGPEYAIEFFHGYTYS-AHPVACAAGLATLDIYREE 345 (445)
T ss_pred EEec--cccccCcccceeeEEcH--------------HHHHhhccCcccccccccccCCC-cCHHHHHHHHHHHHHHHhc
Confidence 8887 988643 357777776 333332211 011 1233 3555566666889998876
Q ss_pred ccchhHhhhccccchhhhhcccCCCccccCCCCC
Q 018231 323 ITFSHIHVFSLHVYPAFVSNQNNSENIEEDKGRP 356 (359)
Q Consensus 323 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 356 (359)
...++.+...-+.... +..+.....+++++|+.
T Consensus 346 ~l~~~~~~~g~~l~~~-l~~l~~~~~v~~vrg~G 378 (445)
T PRK09221 346 DLFERAAELAPYFEDA-VHSLKGLPHVIDIRNIG 378 (445)
T ss_pred cHHHHHHHHHHHHHHH-HHhhccCCCEEEEecCc
Confidence 5444444443222221 21222234566676654
No 338
>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=99.02 E-value=3.7e-08 Score=95.92 Aligned_cols=250 Identities=11% Similarity=0.077 Sum_probs=133.5
Q ss_pred cCceeeCCCC-----CCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCC
Q 018231 47 KGLELIPSEN-----FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSG 121 (359)
Q Consensus 47 ~~i~l~~~~~-----~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG 121 (359)
..|++..+-. --.|.|.+++.+.+......+ +. .+.. + .+.+++.+.+.. .+ .+.++++
T Consensus 54 ~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~------~~-~~~~--~--~la~~l~~~~p~-~~----~v~f~~s 117 (428)
T PRK12389 54 KYIDYLAAYGPIITGHAHPHITKAITEAAENGVLYG------TP-TELE--I--EFAKMLKEAIPS-LE----KVRFVNS 117 (428)
T ss_pred EEEEccccccccccCCCCHHHHHHHHHHHHhCCccC------CC-CHHH--H--HHHHHHHHhCCC-Cc----EEEEeCC
Confidence 3466654433 246899999988876521001 11 1211 2 245666666542 22 3666665
Q ss_pred hH-HHHHHHHhh--cCCCCeeeecCCCCCcccCccccccccc-e-----eeeeee----eEEEecccCCCCCCCCHHHHH
Q 018231 122 SP-SNFQVYTAL--LKPHDRIMALDLPHGGHLSHGYQTDTKK-I-----SAVSIF----FETMPYRLNESTGYIDYDQLE 188 (359)
Q Consensus 122 ~~-a~~~~~~al--~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~-~-----~~~g~~----~~~v~~~~~~~~~~~d~e~l~ 188 (359)
++ |+..++... .....+|+.....|.+........-... . ...+.. .....++ ..|++.++
T Consensus 118 GseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~d~~~l~ 191 (428)
T PRK12389 118 GTEAVMTTIRVARAYTGRTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVITVP------FNDIEALK 191 (428)
T ss_pred HHHHHHHHHHHHHHhhCCCEEEEECCCcCCChHHHHHhcCCcccccCCCCCCCCCCcccCceEEcC------CCCHHHHH
Confidence 55 888766643 2344678877765555421100000000 0 000000 0011111 12789998
Q ss_pred HHhhhh--CCcEEEEc--CCCCCChhh----HHHHHHHHHHcCCEEEEeccccccccccC--CCCCCCCCceEEEeCCCC
Q 018231 189 KSATLF--RPKLIVAG--ASAYARLYD----YERIRKVCNKQKAIMLADMAHISGLVAAG--VIPSPFEYADVVTTTTHK 258 (359)
Q Consensus 189 ~~i~~~--~~k~v~l~--~~n~g~~~~----l~~i~~la~~~~~~vivD~a~~~g~~~~~--~~~~~~~~~D~v~~s~~K 258 (359)
+.+.+. ++.+|++. ..+.|.+.| +++|.++|++||+++|.|++|+....... ....+. ..|+++++ |
T Consensus 192 ~~l~~~~~~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~Rt~~~~a~~~~gv-~PDivt~g--K 268 (428)
T PRK12389 192 EALDKWGDEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAFRFMYGGAQDLLGV-EPDLTALG--K 268 (428)
T ss_pred HHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccccccccCcchhhHHhCC-CCCeeeec--h
Confidence 888632 45666665 333565555 99999999999999999999863211111 011111 26888776 9
Q ss_pred cCCCC-CceEEEEeCCcchhccCCcchhhhHHHhhccc--cCCCCCCCCcHHHHHHHHHHHHHHhccccchhHhhhcccc
Q 018231 259 SLRGP-RGAMIFFRKGVKEINKQGKEVFYDYEEKINQA--VFPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHV 335 (359)
Q Consensus 259 ~l~gp-~gG~l~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~~l~~ 335 (359)
.++|. +-|++++++ ++.+.+... ...+...+.|..+.+|..++|+.+.++....+.++..-+.
T Consensus 269 ~lggG~Pi~av~~~~--------------~i~~~~~~~~~~~~~~T~~gnpl~~Aaala~L~~l~~~~l~~~~~~~g~~l 334 (428)
T PRK12389 269 IIGGGLPIGAYGGRK--------------DIMEQVAPLGPAYQAGTMAGNPASMAAGIACLEVLQQEGVYEKLDRLGAML 334 (428)
T ss_pred hhcCCCceeEEeEHH--------------HHHhhhccCCCcccccCCccCHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 98653 236677776 444444211 1111112345667788888899998765555555553333
No 339
>PRK07678 aminotransferase; Validated
Probab=99.01 E-value=3.1e-08 Score=96.96 Aligned_cols=266 Identities=12% Similarity=0.058 Sum_probs=137.0
Q ss_pred CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECC-ChHHHHHHHHhh---c
Q 018231 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLS-GSPSNFQVYTAL---L 133 (359)
Q Consensus 58 ~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~ts-G~~a~~~~~~al---~ 133 (359)
-.|+|.+|+.+.+.... +... .+.. +. .+ .+.+.+.+.++... .+.|++ |+.|+..++... .
T Consensus 64 ~~p~v~~ai~~q~~~~~---~~~~-~~~~-~~--~~--~lae~l~~~~~~~~-----~v~f~~sGseA~e~AlklAr~~t 129 (451)
T PRK07678 64 GRKELAEAAYEQLKTLS---YFPL-TQSH-EP--AI--KLAEKLNEWLGGEY-----VIFFSNSGSEANETAFKIARQYH 129 (451)
T ss_pred CCHHHHHHHHHHHHhcC---cccc-ccCC-HH--HH--HHHHHHHHhCCCCC-----EEEEeCCcHHHHHHHHHHHHHHH
Confidence 46899999988776521 1111 1111 21 22 25577777775432 377765 555888666543 2
Q ss_pred ----CCC-CeeeecCCCCCcccCccccc-----ccc--ceeeeeeeeEEEecccCC-CCC-----CCC---HHHHHHHhh
Q 018231 134 ----KPH-DRIMALDLPHGGHLSHGYQT-----DTK--KISAVSIFFETMPYRLNE-STG-----YID---YDQLEKSAT 192 (359)
Q Consensus 134 ----~~G-d~Vl~~~~~~~~~~~~~~~~-----~~~--~~~~~g~~~~~v~~~~~~-~~~-----~~d---~e~l~~~i~ 192 (359)
++| .+|+.....|.+...-.... ++. .....+ +..++.+... ..+ ..| ++.+++.+.
T Consensus 130 ~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 207 (451)
T PRK07678 130 AQKGEPHRYKFISRYRAYHGNSMGALAATGQAQRKYKYEPLAPG--FLHVPPPDCYRMPGIESEDIYDLECVKEIDRVMT 207 (451)
T ss_pred HhcCCCCCcEEEEECCCcCCccHHHhhcCCCcccccccCCCCCC--CEEeCCCccccccccCChHHHHHHHHHHHHHHHH
Confidence 123 57887776555542111000 000 000111 1222211100 000 011 233566664
Q ss_pred ---hhCCcEEEEcCC--CCCChh----hHHHHHHHHHHcCCEEEEecccc-ccccc--cCCCCCCCCCceEEEeCCCCcC
Q 018231 193 ---LFRPKLIVAGAS--AYARLY----DYERIRKVCNKQKAIMLADMAHI-SGLVA--AGVIPSPFEYADVVTTTTHKSL 260 (359)
Q Consensus 193 ---~~~~k~v~l~~~--n~g~~~----~l~~i~~la~~~~~~vivD~a~~-~g~~~--~~~~~~~~~~~D~v~~s~~K~l 260 (359)
..++.+|++.|- +.|.+. -++++.++|++||+++|.|++|. +|... ...+..+. ..|+++++ |.+
T Consensus 208 ~~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~gv-~PDivt~g--K~l 284 (451)
T PRK07678 208 WELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGKAFGFMNYGV-KPDIITMA--KGI 284 (451)
T ss_pred hcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCchhHHHHhcCC-CCCEEEee--ccc
Confidence 225677777633 244333 38899999999999999999984 44422 11111111 26999987 999
Q ss_pred CCC--CceEEEEeCCcchhccCCcchhhhHHHhhcccc-----CCCCCCCCcHHHHHHHHHHHHHHhccccchhHhhhcc
Q 018231 261 RGP--RGAMIFFRKGVKEINKQGKEVFYDYEEKINQAV-----FPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSL 333 (359)
Q Consensus 261 ~gp--~gG~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~~~~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~~l 333 (359)
+|. +-|++++++ ++.+.+.... ..+...+.|..+.+|..++|+.+.++...++.++..-
T Consensus 285 ggG~~Pi~av~~~~--------------~i~~~~~~~~~~~~~~h~~T~~gnp~~~aaa~a~l~~l~~~~~~~~~~~~g~ 350 (451)
T PRK07678 285 TSAYLPLSATAVKK--------------EIYEAFKGKGEYEHFRHVNTFGGNPAACALALKNLEIMENENLIERSAQLGE 350 (451)
T ss_pred ccCCcceeEEEEcH--------------HHHHHHhccCcccccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 764 347888877 4444332210 1111223455677777788999887654455555533
Q ss_pred ccchhhhhcccCCCccccCCCCC
Q 018231 334 HVYPAFVSNQNNSENIEEDKGRP 356 (359)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~ 356 (359)
+....+...+.....+++++|+.
T Consensus 351 ~l~~~l~~~~~~~~~v~~vrg~G 373 (451)
T PRK07678 351 LLLEQLKEELGEHPLVGDIRGKG 373 (451)
T ss_pred HHHHHHHHHHhcCCCEEEEEeec
Confidence 33333211123345677777764
No 340
>PRK07481 hypothetical protein; Provisional
Probab=99.01 E-value=5.9e-08 Score=94.98 Aligned_cols=146 Identities=11% Similarity=0.103 Sum_probs=88.4
Q ss_pred CCcEEEEcCCC--CCChh----hHHHHHHHHHHcCCEEEEecccc-cccccc--CCCCCCCCCceEEEeCCCCcCCCC--
Q 018231 195 RPKLIVAGASA--YARLY----DYERIRKVCNKQKAIMLADMAHI-SGLVAA--GVIPSPFEYADVVTTTTHKSLRGP-- 263 (359)
Q Consensus 195 ~~k~v~l~~~n--~g~~~----~l~~i~~la~~~~~~vivD~a~~-~g~~~~--~~~~~~~~~~D~v~~s~~K~l~gp-- 263 (359)
++.+|++.|-. .|.+. -++++.++|++||+++|.|++++ +|.... .....+. ..|+++++ |.++|.
T Consensus 213 ~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv-~PDiv~~g--Kgl~gG~~ 289 (449)
T PRK07481 213 TIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTGSWFGSRGWGV-KPDIMCLA--KGITSGYV 289 (449)
T ss_pred cEEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcCchhhHhhhcCC-CCCEEEEe--ecccCCCc
Confidence 56777776332 34333 28899999999999999999986 332211 0111111 26999997 999764
Q ss_pred CceEEEEeCCcchhccCCcchhhhHHHhhcccc------CCCCCCCCcHHHHHHHHHHHHHHhccccchhHhhhccccch
Q 018231 264 RGAMIFFRKGVKEINKQGKEVFYDYEEKINQAV------FPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYP 337 (359)
Q Consensus 264 ~gG~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~------~~~~~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~~l~~~~ 337 (359)
+-|++++++ ++.+.+.... ..+...+.|..+.+|..++|+.+.++...++.++..-+...
T Consensus 290 Pi~av~~~~--------------~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~ 355 (449)
T PRK07481 290 PLGATMVNA--------------RIADAFEANADFGGAIMHGYTYSGHPVACAAALATLDIVVREDLPANAAKRGAYLLE 355 (449)
T ss_pred CceEEEEcH--------------HHHHHHhccCccccccccCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 347788877 3333332210 11111223566677888889998877666777666544443
Q ss_pred hhhhcccCCCccccCCCCCC
Q 018231 338 AFVSNQNNSENIEEDKGRPC 357 (359)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~ 357 (359)
....-......+++++|+-.
T Consensus 356 ~L~~l~~~~~~i~~vrG~Gl 375 (449)
T PRK07481 356 GLQPLKERFELVGDVRGKGL 375 (449)
T ss_pred HHHHHhhcCCCeEEEeecce
Confidence 33322344567788887753
No 341
>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]
Probab=99.01 E-value=3.8e-08 Score=87.54 Aligned_cols=214 Identities=13% Similarity=0.123 Sum_probs=127.4
Q ss_pred cCceeeCCCCCCcHHHHHHHHhhhhccCCCC-CCCC-cccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-
Q 018231 47 KGLELIPSENFTSVSVMQAVGSVMTNKYSEG-YPGA-RYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP- 123 (359)
Q Consensus 47 ~~i~l~~~~~~~~~~v~~al~~~~~~~~~~g-~~~~-~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~- 123 (359)
..|.|..+.+..-|++.+...+...+...++ +... --|.++++.+.+-+++.+.+.+.+|..-.. .+|.+|+|+.
T Consensus 31 g~imLggGNPa~iPem~~~f~~~~aemla~~~~~e~~cnY~~pQG~~~li~ala~~l~~~ygwnit~--~NIalTnGSQs 108 (417)
T COG3977 31 GAIMLGGGNPARIPEMDDYFQDLLAEMLASGKATEALCNYDGPQGKAVLIDALAKMLRREYGWNITA--QNIALTNGSQS 108 (417)
T ss_pred CceeeCCCCcccChhHHHHHHHHHHHHHhcchHHHHHhcCCCCcchhHHHHHHHHHHHHHhCCCCcc--ceeeecCCccc
Confidence 4566666655556777777666544322222 1110 124566777777778889999999985433 3799999999
Q ss_pred HHHHHHHhh---cCCCC--eeeec-CCCCCcccCccccccccceeeeeeeeEEE-e-cccCCC---CCCCCHHHHHHHhh
Q 018231 124 SNFQVYTAL---LKPHD--RIMAL-DLPHGGHLSHGYQTDTKKISAVSIFFETM-P-YRLNES---TGYIDYDQLEKSAT 192 (359)
Q Consensus 124 a~~~~~~al---~~~Gd--~Vl~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~v-~-~~~~~~---~~~~d~e~l~~~i~ 192 (359)
+...++.-+ ...|+ +|+.+ .++|-++-..+ +.+--++.. | +...+. .+.+|++++. +.
T Consensus 109 ~fFYlfNlF~G~~sdG~~k~illPLaPeYiGY~d~~---------l~~d~fVs~kP~iel~~~g~FKY~vDF~~l~--i~ 177 (417)
T COG3977 109 AFFYLFNLFAGRRSDGTEKKILLPLAPEYIGYADAG---------LEEDLFVSAKPNIELLPAGQFKYHVDFEHLH--IG 177 (417)
T ss_pred hHHHHHHHhcCccCCCcceeEeeccChhhccccccc---------cCccceeeccCCcccccccceeeccCHHHcc--cc
Confidence 766555544 34554 34443 44444332211 111111100 0 011111 2578888875 44
Q ss_pred hhCCcEEEEc-CCC-CCCh---hhHHHHHHHHHHcCCEEEEeccccccccccCC-CCCCCC-CceEEEeCCCCc-CCCCC
Q 018231 193 LFRPKLIVAG-ASA-YARL---YDYERIRKVCNKQKAIMLADMAHISGLVAAGV-IPSPFE-YADVVTTTTHKS-LRGPR 264 (359)
Q Consensus 193 ~~~~k~v~l~-~~n-~g~~---~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~-~~~~~~-~~D~v~~s~~K~-l~gp~ 264 (359)
+ .+.+|+++ |+| ||.+ .++.+|.++|++||+++++|.|.+...-.+-. +..+++ .--+.|+|.+|. +.|.+
T Consensus 178 e-~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliIDnAYg~PFP~iifsd~~~~w~~NiilC~SLSK~GLPG~R 256 (417)
T COG3977 178 E-STGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGVPFPGIIFSDATPLWNENIILCMSLSKLGLPGSR 256 (417)
T ss_pred c-ccceEEecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEEecccCCCCCceecccccccCCCCEEEEeehhhcCCCCcc
Confidence 5 78888888 999 9944 35778888999999999999997643222211 112223 345899999992 23333
Q ss_pred ceEEEEeCCc
Q 018231 265 GAMIFFRKGV 274 (359)
Q Consensus 265 gG~l~~~~~~ 274 (359)
.|+++.+.++
T Consensus 257 ~GIiIane~v 266 (417)
T COG3977 257 CGIIIANEKV 266 (417)
T ss_pred eeEEEccHHH
Confidence 3888887753
No 342
>PRK06149 hypothetical protein; Provisional
Probab=98.99 E-value=5.9e-08 Score=103.37 Aligned_cols=144 Identities=10% Similarity=0.058 Sum_probs=88.5
Q ss_pred CCcEEEEc--CCCCCChhh----HHHHHHHHHHcCCEEEEeccc-ccccccc---CCCCCCCCCceEEEeCCCCcCCCC-
Q 018231 195 RPKLIVAG--ASAYARLYD----YERIRKVCNKQKAIMLADMAH-ISGLVAA---GVIPSPFEYADVVTTTTHKSLRGP- 263 (359)
Q Consensus 195 ~~k~v~l~--~~n~g~~~~----l~~i~~la~~~~~~vivD~a~-~~g~~~~---~~~~~~~~~~D~v~~s~~K~l~gp- 263 (359)
++.+|++. .++.|.+.+ +++|.++|++||+++|+|++| ++|.... .....+. ..|+++++ |.+++.
T Consensus 744 ~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG~~~~a~e~~gv-~PDivt~g--K~lg~G~ 820 (972)
T PRK06149 744 GLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGFEQQGV-VPDIITMA--KGMGNGH 820 (972)
T ss_pred ceEEEEEcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccCccchhhhhcCC-CCCEEEec--ccccCCe
Confidence 45566665 334555555 999999999999999999999 4554321 1111111 26999876 999653
Q ss_pred CceEEEEeCCcchhccCCcchhhhHHHhhccc-cCCCCCCCCcHHHHHHHHHHHHHHhccccchhHhhhccccchhhhhc
Q 018231 264 RGAMIFFRKGVKEINKQGKEVFYDYEEKINQA-VFPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSN 342 (359)
Q Consensus 264 ~gG~l~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~~l~~~~~~~~~ 342 (359)
+.|++++++ ++.+.+... .....+ +.|..+.++..++|+.+.++...++.++..-+.......-
T Consensus 821 Pl~av~~~~--------------~i~~~~~~~~~~~sT~-~gnP~~~aaala~L~~i~~e~l~~~~~~~G~~l~~~L~~l 885 (972)
T PRK06149 821 PLGAVITRR--------------EIAEALEAEGYFFSST-GGSPVSCRIGMAVLDVLREEKLQENARRVGDHLKARLEAL 885 (972)
T ss_pred eeEEEEEcH--------------HHHhhhccCCcccCCC-CCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 338888887 444444321 111112 3455666777788999988766667666544444333222
Q ss_pred ccCCCccccCCCCC
Q 018231 343 QNNSENIEEDKGRP 356 (359)
Q Consensus 343 ~~~~~~~~~~~~~~ 356 (359)
......+++++|+-
T Consensus 886 ~~~~~~i~~vrG~G 899 (972)
T PRK06149 886 ADRHPLIGAVHGMG 899 (972)
T ss_pred HHhCCCeEEEeecc
Confidence 34456788887764
No 343
>PRK07483 hypothetical protein; Provisional
Probab=98.99 E-value=3.8e-08 Score=96.07 Aligned_cols=156 Identities=14% Similarity=0.142 Sum_probs=93.3
Q ss_pred HHHHHHhhh---hCCcEEEEcCCC---CCCh----hhHHHHHHHHHHcCCEEEEecccc-cccccc--CCCCCCCCCceE
Q 018231 185 DQLEKSATL---FRPKLIVAGASA---YARL----YDYERIRKVCNKQKAIMLADMAHI-SGLVAA--GVIPSPFEYADV 251 (359)
Q Consensus 185 e~l~~~i~~---~~~k~v~l~~~n---~g~~----~~l~~i~~la~~~~~~vivD~a~~-~g~~~~--~~~~~~~~~~D~ 251 (359)
+++++.+.. .++.+|++.|-. -|.. .-++.+.++|++||+++|.|++++ +|.... .....+. ..|+
T Consensus 186 ~~l~~~~~~~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv-~PDi 264 (443)
T PRK07483 186 DELEAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTGTLFACEEDGV-APDL 264 (443)
T ss_pred HHHHHHHHhcCCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCcccCcHHHHHhhcCC-CCCe
Confidence 566665542 246677776432 2422 238899999999999999999986 332210 0011111 2699
Q ss_pred EEeCCCCcCCCC--CceEEEEeCCcchhccCCcchhhhHHHhhcccc---CCCCCCCCcHHHHHHHHHHHHHHhccccch
Q 018231 252 VTTTTHKSLRGP--RGAMIFFRKGVKEINKQGKEVFYDYEEKINQAV---FPGLQGGPHNHTITGLAVALKQVCTLITFS 326 (359)
Q Consensus 252 v~~s~~K~l~gp--~gG~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~gt~~~~~i~al~~Al~~~~~~~~~~ 326 (359)
++++ |.++|. +-|++++++ ++.+.+.... ..+...+.|..+.++..+.++.+.++....
T Consensus 265 v~~g--K~l~gG~~Pi~av~~~~--------------~i~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~l~~i~~~~l~~ 328 (443)
T PRK07483 265 VTIA--KGLGAGYQPIGAVLASD--------------RIYDAIADGSGFFQHGHTYLGHATACAAALAVQRVIAEDGLLA 328 (443)
T ss_pred eeeh--hhhccCccccEEEEEcH--------------HHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhcCHHH
Confidence 9997 999765 348888877 4444332211 111122345677788888899998876667
Q ss_pred hHhhhccccchhhhhcccCCCccccCCCCCC
Q 018231 327 HIHVFSLHVYPAFVSNQNNSENIEEDKGRPC 357 (359)
Q Consensus 327 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 357 (359)
+.++..-+.......-+.....+++++|+-+
T Consensus 329 ~~~~~g~~l~~~L~~l~~~~~~i~~vRG~Gl 359 (443)
T PRK07483 329 NVRARGEQLRARLRERLGQHPHVGDIRGRGL 359 (443)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeeeEeeccc
Confidence 7666654444333221334467788888754
No 344
>PRK07480 putative aminotransferase; Validated
Probab=98.98 E-value=6.3e-08 Score=94.88 Aligned_cols=154 Identities=13% Similarity=0.078 Sum_probs=89.6
Q ss_pred HHHHHHhhh---hCCcEEEEcCCC--CCChhh----HHHHHHHHHHcCCEEEEecccc-cccccc--CCCCCCCCCceEE
Q 018231 185 DQLEKSATL---FRPKLIVAGASA--YARLYD----YERIRKVCNKQKAIMLADMAHI-SGLVAA--GVIPSPFEYADVV 252 (359)
Q Consensus 185 e~l~~~i~~---~~~k~v~l~~~n--~g~~~~----l~~i~~la~~~~~~vivD~a~~-~g~~~~--~~~~~~~~~~D~v 252 (359)
+.+++.+.+ .++.+|++.|-. .|.+.+ +++|.++|++||+++|+|++|+ +|.... .....+. ..|++
T Consensus 206 ~~l~~~~~~~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv-~PDiv 284 (456)
T PRK07480 206 RQLEAKILELGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTGEWFGSQHFGI-KPDLM 284 (456)
T ss_pred HHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhhhhhcCC-CCCee
Confidence 556555532 256677776332 344333 8899999999999999999984 443221 1111111 26899
Q ss_pred EeCCCCcCCCC--CceEEEEeCCcchhccCCcchhhhHHHhhc--cc-cCCCCCCCCcHHHHHHHHHHHHHHhccccchh
Q 018231 253 TTTTHKSLRGP--RGAMIFFRKGVKEINKQGKEVFYDYEEKIN--QA-VFPGLQGGPHNHTITGLAVALKQVCTLITFSH 327 (359)
Q Consensus 253 ~~s~~K~l~gp--~gG~l~~~~~~~~~~~~g~~~~~~~~~~~~--~~-~~~~~~gt~~~~~i~al~~Al~~~~~~~~~~~ 327 (359)
+++ |.++|. +-|++++++ ++.+.+. .. ...+...+.|..+.+|..++|+.+.++....+
T Consensus 285 ~~g--K~l~gG~~Pi~av~~~~--------------~i~~~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~ 348 (456)
T PRK07480 285 TIA--KGLTSGYIPMGAVGVGD--------------RVAEVLIEEGGEFNHGFTYSGHPVAAAVALANLRILRDEGIVER 348 (456)
T ss_pred eee--hhhccCCccceEEEEcH--------------HHHHHHhcCCCCcccCCCCCcCHHHHHHHHHHHHHHHhCCHHHH
Confidence 887 999764 347777776 3333331 11 11122223456777888899999987655566
Q ss_pred H-hhhccccchhhhhcccCCCccccCCCCC
Q 018231 328 I-HVFSLHVYPAFVSNQNNSENIEEDKGRP 356 (359)
Q Consensus 328 ~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 356 (359)
. ++..-+....... +.....+++++|+-
T Consensus 349 ~~~~~g~~l~~~l~~-l~~~~~i~~vrG~G 377 (456)
T PRK07480 349 VRDDTGPYLQKRLRE-LADHPLVGEVRGVG 377 (456)
T ss_pred HHHHHHHHHHHHHHH-hhcCCCeeeEEeec
Confidence 6 3443333222222 22345678888764
No 345
>KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism]
Probab=98.98 E-value=2.3e-08 Score=93.03 Aligned_cols=138 Identities=14% Similarity=0.255 Sum_probs=98.5
Q ss_pred ccCCchhHHHHHHHHHHHHHHHcCC-CCCCCceeEEECCChH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccc
Q 018231 83 YYGGNEYIDMAESLCQKRALEAFRL-DPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKK 160 (359)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~a~~~g~-~~~~~~~~v~~tsG~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~ 160 (359)
.|+.+.++.++...+++.....+.. ...+| .|++|+|.+ ++..+++.++++||.|++-.+++++.+. .
T Consensus 95 QYg~s~G~peLl~fik~h~~~~ih~p~~~~w--diiit~G~t~~l~~~l~~~~N~gd~vlie~~ty~~AL~--------s 164 (472)
T KOG0634|consen 95 QYGQSSGIPELLLFIKDHNRPTIHAPPYKNW--DIIITNGNTDGLFKVLRTLINRGDHVLIEEYTYPSALQ--------S 164 (472)
T ss_pred ccccccCcHHHHHHHHHhccccccCCCCCCc--eEEEecCCchHHHHHHHHhhcCCCceEEecccchHHHH--------h
Confidence 4666677777765555544433444 33455 799999999 8888999999999999999977776654 3
Q ss_pred eeeeeeeeEEEecccCCCCCCCCHHHHHHHhhh--------hCCcEEEEc--CCC-CCChh---hHHHHHHHHHHcCCEE
Q 018231 161 ISAVSIFFETMPYRLNESTGYIDYDQLEKSATL--------FRPKLIVAG--ASA-YARLY---DYERIRKVCNKQKAIM 226 (359)
Q Consensus 161 ~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~--------~~~k~v~l~--~~n-~g~~~---~l~~i~~la~~~~~~v 226 (359)
++..|+ ..+|++.+ ...+++|.|++.+.. .++++++.. ..| ||... --++|.+||++|+.++
T Consensus 165 ~~a~gv--~~ipv~md--~~Gi~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~LArKyDfLI 240 (472)
T KOG0634|consen 165 MEALGV--KIIPVKMD--QDGIDPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARKYDFLI 240 (472)
T ss_pred ccccCc--eEEecccc--CCCCCHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHHcCEEE
Confidence 344564 44665665 456799999988753 136677654 556 77443 3558999999999999
Q ss_pred EEeccccc
Q 018231 227 LADMAHIS 234 (359)
Q Consensus 227 ivD~a~~~ 234 (359)
|.|+...+
T Consensus 241 VeDdpYy~ 248 (472)
T KOG0634|consen 241 VEDDPYYF 248 (472)
T ss_pred EecCccce
Confidence 99998754
No 346
>PRK06777 4-aminobutyrate aminotransferase; Provisional
Probab=98.98 E-value=8.2e-08 Score=93.31 Aligned_cols=268 Identities=12% Similarity=0.077 Sum_probs=133.8
Q ss_pred CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCC-CCCCceeEEECCChHHHHHHHHhh--cC
Q 018231 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLD-PEKWGVNVQSLSGSPSNFQVYTAL--LK 134 (359)
Q Consensus 58 ~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~-~~~~~~~v~~tsG~~a~~~~~~al--~~ 134 (359)
-.|.+.+++.+.+.+.. +.....+.. +.. ++ +.+++.+++... .+. ..+.+||+.|+..++... ..
T Consensus 57 ~~p~v~~ai~~ql~~~~---~~~~~~~~~-~~~--~~--la~~l~~~~p~~~~~~---~~f~~sGseA~e~AlklAr~~t 125 (421)
T PRK06777 57 RHPKVVAAVRQQLDQFT---HTAYQIVPY-ASY--VT--LAERINALAPIDGPAK---TAFFTTGAEAVENAVKIARAYT 125 (421)
T ss_pred CCHHHHHHHHHHHhhcc---cccccccCC-hHH--HH--HHHHHHHhCCCCCCce---EEEeCCcHHHHHHHHHHHHHhh
Confidence 46889999988877521 111100111 111 21 446677766431 122 244455555888666533 23
Q ss_pred CCCeeeecCCCCCcccCcccc------ccccceeeeeeeeEEEecccCCC--CCCCCHHHHHHHhhh----hCCcEEEEc
Q 018231 135 PHDRIMALDLPHGGHLSHGYQ------TDTKKISAVSIFFETMPYRLNES--TGYIDYDQLEKSATL----FRPKLIVAG 202 (359)
Q Consensus 135 ~Gd~Vl~~~~~~~~~~~~~~~------~~~~~~~~~g~~~~~v~~~~~~~--~~~~d~e~l~~~i~~----~~~k~v~l~ 202 (359)
...+|+.....|.+...-... .++....-.-..+..++++-... ....+++.+++.+.+ .++.+|++.
T Consensus 126 gr~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~iaavi~E 205 (421)
T PRK06777 126 GRPGVIAFGGAFHGRTLLTMALTGKVAPYKVGFGPFPGSIFHALYPNELHGVSVEEALSSVERLFKADIAPDQVAAILLE 205 (421)
T ss_pred CCCeEEEEcCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCccccCcCHHHHHHHHHHHHHhccCCCceEEEEEC
Confidence 445687777655554211100 00000000000011122221100 001236677777752 246677776
Q ss_pred CC--CCCC-hh---hHHHHHHHHHHcCCEEEEeccccccccccCCCCCC---CC-CceEEEeCCCCcCCC-CCceEEEEe
Q 018231 203 AS--AYAR-LY---DYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP---FE-YADVVTTTTHKSLRG-PRGAMIFFR 271 (359)
Q Consensus 203 ~~--n~g~-~~---~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~---~~-~~D~v~~s~~K~l~g-p~gG~l~~~ 271 (359)
|. +.|. .. .+++|.++|++||+++|+|++|+ |....+. .+. ++ ..|++++ +|.+++ .+.|+++++
T Consensus 206 pv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~t-g~gr~g~-~~~~~~~~~~pDiv~~--sK~l~~G~pigav~~~ 281 (421)
T PRK06777 206 PIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQT-GFARTGK-LFAMEYYDVKPDLITM--AKSLGGGMPISAVVGR 281 (421)
T ss_pred CccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-CCccCCc-hhhhhhcCCCCCEEee--ehhhcCCCceEEEEEc
Confidence 32 2442 23 38899999999999999999986 3311111 111 11 2687765 598853 334888887
Q ss_pred CCcchhccCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhccccchhHhhhccccchhhhhcccCCCcccc
Q 018231 272 KGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSENIEE 351 (359)
Q Consensus 272 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 351 (359)
+ ++.+.+........+ +.|....+|..++|+.+.++....+.+....+.......-......+++
T Consensus 282 ~--------------~i~~~~~~~~~~~T~-~~~p~~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~ 346 (421)
T PRK06777 282 A--------------EVMDAPAPGGLGGTY-AGNPLAVAAALAVLDVIAEEKLCQRALILGAHLVEVLEKAKASCPAIVD 346 (421)
T ss_pred H--------------HHHhccCCCCCCCCC-CcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCCeEE
Confidence 7 444444332222223 3466777888888988876544455444433333222211222345666
Q ss_pred CCCC
Q 018231 352 DKGR 355 (359)
Q Consensus 352 ~~~~ 355 (359)
++|+
T Consensus 347 vrg~ 350 (421)
T PRK06777 347 IRAR 350 (421)
T ss_pred ecCc
Confidence 6665
No 347
>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional
Probab=98.95 E-value=8.1e-08 Score=93.60 Aligned_cols=243 Identities=13% Similarity=0.092 Sum_probs=127.9
Q ss_pred cCceeeCCCC-----CCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCC
Q 018231 47 KGLELIPSEN-----FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSG 121 (359)
Q Consensus 47 ~~i~l~~~~~-----~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG 121 (359)
..|++.++-. .-.|.|.+|+.+.+.... .+ .. ....+++ +.+++.+++... + .+.++++
T Consensus 49 ~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~--~~------~~-~~~~~~~--la~~l~~~~p~~-~----~v~f~~s 112 (431)
T PRK06209 49 EYIEYGMGLRAVGLGHAYPPVVEAVREALQDGC--NF------TR-PSAIELD--AAESFLELIDGA-D----MVKFCKN 112 (431)
T ss_pred EEEEccccccchhcCCCCHHHHHHHHHHHHhCc--CC------CC-CCHHHHH--HHHHHHHhCCcc-c----eEEEecC
Confidence 3466654432 246899999998877522 11 11 1112222 456777776321 2 3666665
Q ss_pred hH-HHHHHHHhh-cCCC-Ceeeec-CCCCCcccCccccccccceeeeeee----eEEEecccCCCCCCCCHHHHHHHhhh
Q 018231 122 SP-SNFQVYTAL-LKPH-DRIMAL-DLPHGGHLSHGYQTDTKKISAVSIF----FETMPYRLNESTGYIDYDQLEKSATL 193 (359)
Q Consensus 122 ~~-a~~~~~~al-~~~G-d~Vl~~-~~~~~~~~~~~~~~~~~~~~~~g~~----~~~v~~~~~~~~~~~d~e~l~~~i~~ 193 (359)
++ |+..++... .-.| .+|+.. ...+.+.. .++...... ..+.. .....++ .-|++++++.+.+
T Consensus 113 GseA~e~AlklAr~~tgr~~i~~~~~~~~h~~~-~~~~g~~~~--~~~~~~~~~~~~~~~~------~~d~~~l~~~l~~ 183 (431)
T PRK06209 113 GSDATSAAVRLARAYTGRDLVARCADHPFFSTD-DWFIGTTPM--SAGIPASVSALTVTFR------YNDIASLEALFED 183 (431)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEeccCcccccc-ccccccCCC--CCCCChhHhccccccC------CCCHHHHHHHHHh
Confidence 55 888766643 2233 455544 11111100 011000000 00000 0011111 2278999998864
Q ss_pred h--CCcEEEEcCCC--CCChhhHHHHHHHHHHcCCEEEEeccccccccccC--CCC-CCCCCceEEEeCCCCcCCCC-Cc
Q 018231 194 F--RPKLIVAGASA--YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAG--VIP-SPFEYADVVTTTTHKSLRGP-RG 265 (359)
Q Consensus 194 ~--~~k~v~l~~~n--~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~--~~~-~~~~~~D~v~~s~~K~l~gp-~g 265 (359)
. ++.+|++.+.. .+....+++|.++|++||+++|+|++| .|..... ... .+. ..|+++++ |.+++. ++
T Consensus 184 ~~~~~aavi~Epv~g~~~~~~~l~~l~~lc~~~g~lLI~DEv~-tG~~~~~~g~~~~~gv-~PDi~t~g--K~lggG~p~ 259 (431)
T PRK06209 184 HPGRIACVILEPATADEPQDGFLHEVRRLCHENGALFILDEMI-TGFRWHMRGAQKLYGI-VPDLSCFG--KALGNGFAV 259 (431)
T ss_pred CCCCEEEEEEccccCCCCCHHHHHHHHHHHHHcCCEEEEEccc-ccCCcCcchhhHHhCC-Ccceeeeh--hhhcCCccc
Confidence 2 35566654332 445566999999999999999999998 4543211 111 111 25887775 999653 45
Q ss_pred eEEEEeCCcchhccCCcchhhhHHHh--hccc--cC---CCCCCCCcHHHHHHHHHHHHHHhccccchhHhhhc
Q 018231 266 AMIFFRKGVKEINKQGKEVFYDYEEK--INQA--VF---PGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFS 332 (359)
Q Consensus 266 G~l~~~~~~~~~~~~g~~~~~~~~~~--~~~~--~~---~~~~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~~ 332 (359)
|++++++ ++.+. +... .. .+..-++|...++|..++|+.+.++....+.+...
T Consensus 260 ~av~~~~--------------~i~~~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~i~~~~~~~~~~~~g 319 (431)
T PRK06209 260 SALAGKR--------------EYMELGGLEHTDRERVFLLSTTHGAETHALAAAIATMAIYRDEDVIERLHEQG 319 (431)
T ss_pred EEEEEHH--------------HHHhhhcccccCCCCceeeccCCCCCHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 8888876 33332 1100 00 11123456678888889999998765445554443
No 348
>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=98.95 E-value=7.9e-08 Score=93.46 Aligned_cols=242 Identities=10% Similarity=-0.002 Sum_probs=122.2
Q ss_pred CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCC-CCCCceeEEEC-CChHHHHHHHHhh--c
Q 018231 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLD-PEKWGVNVQSL-SGSPSNFQVYTAL--L 133 (359)
Q Consensus 58 ~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~-~~~~~~~v~~t-sG~~a~~~~~~al--~ 133 (359)
-.|.|.+|+.+.+.+.. +.....+.. + ..+ .+.+++.+.+... .+ .++++ ||+.|+..++... .
T Consensus 50 ~~p~v~~a~~~ql~~~~---~~~~~~~~~-~--~~~--~la~~l~~~~p~~~~~----~v~f~~sGseA~e~AlklAr~~ 117 (420)
T TIGR00700 50 SHPRVVDAVRTQVAEFT---HTCFMVTPY-E--GYV--ALAEKLNRIAPGSGPK----KSVFFNSGAEAVENAVKIARSY 117 (420)
T ss_pred CCHHHHHHHHHHHHhcc---CccccccCC-h--HHH--HHHHHHHHhCCCCCCC----EEEEeCCcHHHHHHHHHHHHHh
Confidence 46899999998876521 111100111 1 112 2446677666321 12 35555 4555888666533 2
Q ss_pred CCCCeeeecCCCCCcccCcccc------cccccee--eeeeeeEEEecccCCC--------CCCCCHHHHHHHhh----h
Q 018231 134 KPHDRIMALDLPHGGHLSHGYQ------TDTKKIS--AVSIFFETMPYRLNES--------TGYIDYDQLEKSAT----L 193 (359)
Q Consensus 134 ~~Gd~Vl~~~~~~~~~~~~~~~------~~~~~~~--~~g~~~~~v~~~~~~~--------~~~~d~e~l~~~i~----~ 193 (359)
....+|+.....|.+...-... .+..... ..+ +..++++.... ...-+++.+++.+. .
T Consensus 118 tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (420)
T TIGR00700 118 TGRPGVVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPE--VYRAPLPYPYRDGLLDKQLSTDGELAAARAIFVIDVGA 195 (420)
T ss_pred cCCCcEEEECCCcCCCcHHHHHhcCCCcccccCCCCCCCC--cEEeCCCccccccccccchhHHHHHHHHHHHHHhhcCC
Confidence 3445687777655554211000 0010000 011 12233221000 00012456666653 2
Q ss_pred hCCcEEEEcC--CCCCChhh----HHHHHHHHHHcCCEEEEeccccc-cccc--cCCCCCCCCCceEEEeCCCCcCCC-C
Q 018231 194 FRPKLIVAGA--SAYARLYD----YERIRKVCNKQKAIMLADMAHIS-GLVA--AGVIPSPFEYADVVTTTTHKSLRG-P 263 (359)
Q Consensus 194 ~~~k~v~l~~--~n~g~~~~----l~~i~~la~~~~~~vivD~a~~~-g~~~--~~~~~~~~~~~D~v~~s~~K~l~g-p 263 (359)
.++.+|++.| .++|...+ +++|.++|++||+++|.|+++.. |... ......+. ..|++++| |.+++ .
T Consensus 196 ~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g~~~a~~~~~~-~pDi~~ls--K~l~~G~ 272 (420)
T TIGR00700 196 NNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGAMFACEHEGP-EPDLITTA--KSLADGL 272 (420)
T ss_pred CcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccchhHHHhhcCC-CCCEEEee--ccccCCc
Confidence 2567777763 33554333 89999999999999999999752 2211 00011110 26887755 98863 3
Q ss_pred CceEEEEeCCcchhccCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhccccchhHhhh
Q 018231 264 RGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVF 331 (359)
Q Consensus 264 ~gG~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~ 331 (359)
+-|++++++ ++.+.+........+ +.|....++..++++.+.++...++.+..
T Consensus 273 pig~v~~~~--------------~i~~~~~~~~~~~T~-~~~pl~~aaa~a~l~~l~~~~~~~~~~~~ 325 (420)
T TIGR00700 273 PLSGVTGRA--------------EIMDAPAPGGLGGTY-AGNPLACAAALAVLAIIESEGLIERARQI 325 (420)
T ss_pred ceEEEEecH--------------HHHhhcCCCCcCCCC-CcCHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 338888877 444444322222222 34456667777888887765444444444
No 349
>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=98.94 E-value=5.9e-08 Score=94.18 Aligned_cols=151 Identities=14% Similarity=0.133 Sum_probs=87.2
Q ss_pred HHHHHHhhhhCCcEEEEcCC--C-CC----ChhhHHHHHHHHHHcCCEEEEeccccccccccC-C---CCCCCCCceEEE
Q 018231 185 DQLEKSATLFRPKLIVAGAS--A-YA----RLYDYERIRKVCNKQKAIMLADMAHISGLVAAG-V---IPSPFEYADVVT 253 (359)
Q Consensus 185 e~l~~~i~~~~~k~v~l~~~--n-~g----~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~-~---~~~~~~~~D~v~ 253 (359)
+.+++.+.+ ++.+|++.|- . .| ....+++|.++|++||+++|+|++|. |.-..+ . ...+. ..|+++
T Consensus 191 ~~~~~~~~~-~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~t-G~GrtG~~~a~~~~gv-~PDi~t 267 (422)
T PRK05630 191 RSLELLIDE-TVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIAT-GFGRTGELFATLAAGV-TPDIMC 267 (422)
T ss_pred HHHHHHHhh-ceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccee-CCCcCchhhHHHhcCC-CCCeee
Confidence 445555554 7888887762 2 33 33458999999999999999999984 321111 0 01110 258997
Q ss_pred eCCCCcCCC--CCceEEEEeCCcchhccCCcchhhhHHHhhccc-----cCCCCCCCCcHHHHHHHHHHHHHHhccccch
Q 018231 254 TTTHKSLRG--PRGAMIFFRKGVKEINKQGKEVFYDYEEKINQA-----VFPGLQGGPHNHTITGLAVALKQVCTLITFS 326 (359)
Q Consensus 254 ~s~~K~l~g--p~gG~l~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~gt~~~~~i~al~~Al~~~~~~~~~~ 326 (359)
++ |+++| ++.|++++++ ++.+.+... ...+...+.|....++..++|+.+.++....
T Consensus 268 ~g--K~l~gG~~p~~av~~~~--------------~i~~~~~~~~~~~~~~h~~T~~g~Pla~aaa~aaL~~l~~~~~~~ 331 (422)
T PRK05630 268 VG--KALTGGFMSFAATLCTD--------------KVAQLISTPNGGGALMHGPTFMANPLACAVAHASLEIIETGMWRK 331 (422)
T ss_pred ee--chhhcCccccceeeccH--------------HHHHHHhccCCCCccccCCCCcCCHHHHHHHHHHHHHHHhCcHHH
Confidence 76 99955 4668888887 333333211 0112222356677788888899998764334
Q ss_pred hHhhhccccchhhhhcccCCCccccCCCC
Q 018231 327 HIHVFSLHVYPAFVSNQNNSENIEEDKGR 355 (359)
Q Consensus 327 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 355 (359)
+.++..-+... .++.+.+...+++++|+
T Consensus 332 ~~~~~g~~l~~-~L~~l~~~~~v~~vRg~ 359 (422)
T PRK05630 332 QVKRIEAELIA-GLSPLAHLPGVADVRVL 359 (422)
T ss_pred HHHHHHHHHHH-HHHHhhcCCCeeeeecc
Confidence 44443222111 12222234556777776
No 350
>PRK07036 hypothetical protein; Provisional
Probab=98.94 E-value=1.7e-07 Score=92.02 Aligned_cols=154 Identities=11% Similarity=0.098 Sum_probs=92.8
Q ss_pred HHHHHHhhh---hCCcEEEEcCC--CCCChhh----HHHHHHHHHHcCCEEEEecccc-ccccc--cCCC-CCCCCCceE
Q 018231 185 DQLEKSATL---FRPKLIVAGAS--AYARLYD----YERIRKVCNKQKAIMLADMAHI-SGLVA--AGVI-PSPFEYADV 251 (359)
Q Consensus 185 e~l~~~i~~---~~~k~v~l~~~--n~g~~~~----l~~i~~la~~~~~~vivD~a~~-~g~~~--~~~~-~~~~~~~D~ 251 (359)
+.+++.+.. .++.+|++.|- +.|...+ +++|.++|++||+++|.|++++ +|... .... ..+. ..|+
T Consensus 207 ~~~~~~i~~~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~~gv-~PDi 285 (466)
T PRK07036 207 DEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLGHFFASEAVFGI-QPDI 285 (466)
T ss_pred HHHHHHHHHcCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcCchhhhhhhhcCC-CCCE
Confidence 345555532 25667777633 2454443 8999999999999999999984 44322 1111 1111 2699
Q ss_pred EEeCCCCcCCCC--CceEEEEeCCcchhccCCcchhhhHHHhhccc------cCCCCCCCCcHHHHHHHHHHHHHHhccc
Q 018231 252 VTTTTHKSLRGP--RGAMIFFRKGVKEINKQGKEVFYDYEEKINQA------VFPGLQGGPHNHTITGLAVALKQVCTLI 323 (359)
Q Consensus 252 v~~s~~K~l~gp--~gG~l~~~~~~~~~~~~g~~~~~~~~~~~~~~------~~~~~~gt~~~~~i~al~~Al~~~~~~~ 323 (359)
++++ |.++|. +-|++++++ ++.+.+... ...+...+.|..+.+|..++|+.+.++.
T Consensus 286 vt~g--K~l~gG~~Pi~av~~~~--------------~i~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~Le~i~~~~ 349 (466)
T PRK07036 286 ITFA--KGLTSGYQPLGAVIISE--------------RLLDVISGPNAKGNVFTHGFTYSGHPVACAAALKNIEIMEREG 349 (466)
T ss_pred EEEc--cccccCccccEEEEEcH--------------HHHHHHhcccCcCcccccCCCCCCCHHHHHHHHHHHHHHHhCC
Confidence 9987 999764 347777877 444433211 1112122346677788888899998776
Q ss_pred cchhHhhhccccchhhhhcccCCCccccCCCCC
Q 018231 324 TFSHIHVFSLHVYPAFVSNQNNSENIEEDKGRP 356 (359)
Q Consensus 324 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 356 (359)
...+.++..-+...... .+.+...+++++|+-
T Consensus 350 l~~~~~~~g~~l~~~L~-~l~~~~~v~~vrG~G 381 (466)
T PRK07036 350 LCEHVREVGPYFEERLA-SLRELPLVGDVRGDH 381 (466)
T ss_pred HHHHHHHHHHHHHHHHH-HhccCCCEEEEEeec
Confidence 66676666544444332 223346678887764
No 351
>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=98.94 E-value=8.7e-08 Score=94.08 Aligned_cols=267 Identities=9% Similarity=0.013 Sum_probs=139.9
Q ss_pred CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHhhc---
Q 018231 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALL--- 133 (359)
Q Consensus 58 ~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~al~--- 133 (359)
-.|.|.+++.+.+.... .... . .+. .+... .+.+++.+++....+ .|.++++++ |+..++....
T Consensus 64 ~~p~v~~Ai~~ql~~l~-~~~~-~-~~~-~~~~~----~lae~L~~~~p~~~~----~v~f~~sGsEAve~AlKlAr~~~ 131 (466)
T PRK07030 64 ANPRINQRIKDQVDQLE-HVIL-A-GFS-HEPVI----ELSERLVKITPPGLS----RCFYADNGSSAIEVALKMSFHYW 131 (466)
T ss_pred CCHHHHHHHHHHHHhcC-Cccc-c-ccC-CHHHH----HHHHHHHHhCCCCcC----EEEEeCCcHHHHHHHHHHHHHHH
Confidence 46899999988876521 0110 0 011 11112 255777776642222 377766555 8887665431
Q ss_pred -----CCCCeeeecCCCCCcccCcccc-----ccccc--eeeeeeeeEEEecccCC-CC-C-------CCCHHHHHHHhh
Q 018231 134 -----KPHDRIMALDLPHGGHLSHGYQ-----TDTKK--ISAVSIFFETMPYRLNE-ST-G-------YIDYDQLEKSAT 192 (359)
Q Consensus 134 -----~~Gd~Vl~~~~~~~~~~~~~~~-----~~~~~--~~~~g~~~~~v~~~~~~-~~-~-------~~d~e~l~~~i~ 192 (359)
....+|+.....|.+...-... .++.. ....+ +..+|++... .. + .-+++.+++.+.
T Consensus 132 ~~~g~t~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~p~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~l~~le~~~~ 209 (466)
T PRK07030 132 RNRGKPRKKRFVTLTNSYHGETLAAMSVGDVALFTETYKPLLLD--TIKVPSPDCYLRPEGMSWEEHSRRMFAHMEQTLA 209 (466)
T ss_pred HHhCCCCCcEEEEECCCcCcccHHHHhccCCccccccCCccCCC--CEEcCCCCccccccCCCHHHHHHHHHHHHHHHHH
Confidence 1235688777655553210000 00000 00001 1123221100 00 0 113566777775
Q ss_pred h--hCCcEEEEcC-CC--CCCh----hhHHHHHHHHHHcCCEEEEecccc-cccccc--CCCCCCCCCceEEEeCCCCcC
Q 018231 193 L--FRPKLIVAGA-SA--YARL----YDYERIRKVCNKQKAIMLADMAHI-SGLVAA--GVIPSPFEYADVVTTTTHKSL 260 (359)
Q Consensus 193 ~--~~~k~v~l~~-~n--~g~~----~~l~~i~~la~~~~~~vivD~a~~-~g~~~~--~~~~~~~~~~D~v~~s~~K~l 260 (359)
. .++.+|++.| .. .|.+ .-++++.++|++||+++|.|+++. +|.... .....+. ..|+++++ |.+
T Consensus 210 ~~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG~~~a~~~~gv-~PDiv~~g--Kgl 286 (466)
T PRK07030 210 EHHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGTMFACEQAGI-RPDFLCLS--KAL 286 (466)
T ss_pred hCCCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCccccchHHHhcCC-CCCEEeee--hhc
Confidence 3 2566777766 22 3422 338899999999999999999985 343211 0011111 26999997 998
Q ss_pred CCC--CceEEEEeCCcchhccCCcchhhhHHHhhccc------cCCCCCCCCcHHHHHHHHHHHHHHhccccchhHhhhc
Q 018231 261 RGP--RGAMIFFRKGVKEINKQGKEVFYDYEEKINQA------VFPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFS 332 (359)
Q Consensus 261 ~gp--~gG~l~~~~~~~~~~~~g~~~~~~~~~~~~~~------~~~~~~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~~ 332 (359)
+|. +-|++++++ ++.+.+... ...+...+.|..+.+|..++|+.+.++...++.++..
T Consensus 287 ~gG~~Pi~av~~~~--------------ei~~~~~~~~~~~~~~~h~~T~~gnpla~aaa~a~L~~i~~~~l~~~~~~~G 352 (466)
T PRK07030 287 TGGYLPLAAVLTTD--------------TVYQAFYDDYPTLRAFLHSHSYTGNPLACAAALATLDIFEQDNVIENNRALA 352 (466)
T ss_pred cCCcccceEEEecH--------------HHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 765 348888877 444333211 0111112346677788888999998876667766654
Q ss_pred cccchhhhhcccCCCccccCCCCC
Q 018231 333 LHVYPAFVSNQNNSENIEEDKGRP 356 (359)
Q Consensus 333 l~~~~~~~~~~~~~~~~~~~~~~~ 356 (359)
-+....... +.....+++++|+-
T Consensus 353 ~~l~~~L~~-l~~~~~v~~vrG~G 375 (466)
T PRK07030 353 RRMAEATAH-LADHPHVAEVRQTG 375 (466)
T ss_pred HHHHHHHHH-HhcCCCEEEeEece
Confidence 444333321 12345678888763
No 352
>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=98.94 E-value=1e-07 Score=93.60 Aligned_cols=155 Identities=9% Similarity=0.044 Sum_probs=92.5
Q ss_pred HHHHHHHhhh--hCCcEEEEcC-C-C-CCC----hhhHHHHHHHHHHcCCEEEEecccc-ccccccC--CCCCCCCCceE
Q 018231 184 YDQLEKSATL--FRPKLIVAGA-S-A-YAR----LYDYERIRKVCNKQKAIMLADMAHI-SGLVAAG--VIPSPFEYADV 251 (359)
Q Consensus 184 ~e~l~~~i~~--~~~k~v~l~~-~-n-~g~----~~~l~~i~~la~~~~~~vivD~a~~-~g~~~~~--~~~~~~~~~D~ 251 (359)
++.+++.+.. .++.+|++.| . . .|. ..-++++.++|++||+++|.|+++. +|....- ....+. ..|+
T Consensus 223 ~~~l~~~~~~~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfGRtG~~~a~e~~gv-~PDi 301 (472)
T PRK08742 223 ADALQALFEQSPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRTGTLFACEQAGV-MPDL 301 (472)
T ss_pred HHHHHHHHHhCCCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchHHHhcCC-CCCE
Confidence 5667777742 2566777765 2 2 342 2238899999999999999999986 3432210 111111 2699
Q ss_pred EEeCCCCcCCCC--CceEEEEeCCcchhccCCcchhhhHHHhhcccc-----CCCCCCCCcHHHHHHHHHHHHHHhcccc
Q 018231 252 VTTTTHKSLRGP--RGAMIFFRKGVKEINKQGKEVFYDYEEKINQAV-----FPGLQGGPHNHTITGLAVALKQVCTLIT 324 (359)
Q Consensus 252 v~~s~~K~l~gp--~gG~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~~~~gt~~~~~i~al~~Al~~~~~~~~ 324 (359)
++++ |.++|. +-|++++++ ++.+.+.... ..+...+.|..+.+|..++|+.+.++..
T Consensus 302 v~~g--Kgl~gG~~Plaav~~~~--------------ei~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~i~~~~l 365 (472)
T PRK08742 302 LCLS--KGLTGGFLPLSAVLATQ--------------QLYDAFLDDSRERAFLHSHSYTGNPLACAAALATLDIFADDDV 365 (472)
T ss_pred EEEc--ccccCCCCCcceeeccH--------------HHHHHhhccCccCccCcCCCCCccHHHHHHHHHHHHHHHHCCH
Confidence 9997 999655 347777777 3333332110 1111123466778888888999988766
Q ss_pred chhHhhhccccchhhhhcccCCCccccCCCCC
Q 018231 325 FSHIHVFSLHVYPAFVSNQNNSENIEEDKGRP 356 (359)
Q Consensus 325 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 356 (359)
.++.++..-+.. ..++.+.....+++++|+-
T Consensus 366 ~~~~~~~g~~l~-~~~~~~~~~~~i~dvRG~G 396 (472)
T PRK08742 366 IARNQPTAARMT-QLAAQIGEHPHVADVRQAG 396 (472)
T ss_pred HHHHHHHHHHHH-HHHHHHhcCCCeeeEeccc
Confidence 666666533332 2222223346688888863
No 353
>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=98.93 E-value=8.2e-08 Score=93.33 Aligned_cols=265 Identities=9% Similarity=-0.003 Sum_probs=132.8
Q ss_pred CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHhhc---
Q 018231 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALL--- 133 (359)
Q Consensus 58 ~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~al~--- 133 (359)
-.|.|.+++.+.+.+ . .+.....+. .+... .+.+++.+.+...-+ .|.++++++ |+..++....
T Consensus 61 ~~p~v~~ai~~q~~~-~--~~~~~~~~~-~~~~~----~lae~L~~~~p~~~~----~v~f~~sGseAve~AlklAr~~~ 128 (429)
T PRK06173 61 NHPRLNAAATNQLAK-M--SHIMFGGFT-HEPAV----ELAQKLLEILPPSLN----KIFFADSGSVAVEVAMKMALQYQ 128 (429)
T ss_pred CCHHHHHHHHHHHHh-c--CCccccccC-CHHHH----HHHHHHHhhCCCCcC----EEEEeCCchHHHHHHHHHHHHHH
Confidence 468999998887765 2 110000011 11122 255677776542222 366665555 8887665431
Q ss_pred ----CC-CCeeeecCCCCCccc-Cccc-----cccccce--eeeeeeeEEEecccCCC--CC-CCCHHHHHHHhhh--hC
Q 018231 134 ----KP-HDRIMALDLPHGGHL-SHGY-----QTDTKKI--SAVSIFFETMPYRLNES--TG-YIDYDQLEKSATL--FR 195 (359)
Q Consensus 134 ----~~-Gd~Vl~~~~~~~~~~-~~~~-----~~~~~~~--~~~g~~~~~v~~~~~~~--~~-~~d~e~l~~~i~~--~~ 195 (359)
++ ..+|+.....|.+.. .... ..++... ...+ ...+|.+.... .+ .-+++.+++.+.. .+
T Consensus 129 ~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~--~~~~~~p~~~~~~~~~~~~l~~l~~~i~~~~~~ 206 (429)
T PRK06173 129 QAKGEVQRTKFATIRSGYHGDTWHAMSVCDPVTGMHGLFNHSLPV--QYFLPQPSIKFGEEWNDEAIEPLQDLLEQKGDE 206 (429)
T ss_pred HHhCCCCCcEEEEECCCcCCcchhhhccCCCchhhhhcccccCCC--CeEeCCCCcccchhHHHHHHHHHHHHHHhCCCc
Confidence 13 356777776555531 1100 0000000 0001 11232221100 00 1146667777752 25
Q ss_pred CcEEEEcCC--CC-CC----hhhHHHHHHHHHHcCCEEEEeccccccccccCC----CCCCCCCceEEEeCCCCcCCCC-
Q 018231 196 PKLIVAGAS--AY-AR----LYDYERIRKVCNKQKAIMLADMAHISGLVAAGV----IPSPFEYADVVTTTTHKSLRGP- 263 (359)
Q Consensus 196 ~k~v~l~~~--n~-g~----~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~----~~~~~~~~D~v~~s~~K~l~gp- 263 (359)
+.+|++.|- .. |. ..-++++.++|++||+++|+|++| .|.-..+. ...+. ..|+++++ |.|+|.
T Consensus 207 iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~-tG~GrtG~~~a~~~~gv-~PDiv~~g--K~l~gG~ 282 (429)
T PRK06173 207 IAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIA-TGFGRTGKLFALEHAGV-VPDIMCIG--KALTGGY 282 (429)
T ss_pred EEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchh-cCCCcCCcchHHHhcCC-CCCEEEee--hhhhCCc
Confidence 677777652 33 32 233889999999999999999999 55311110 11111 26888864 998543
Q ss_pred -CceEEEEeCCcchhccCCcchhhhHHHhhccc----cCCCCCCCCcHHHHHHHHHHHHHHhccccchhHhhhccccchh
Q 018231 264 -RGAMIFFRKGVKEINKQGKEVFYDYEEKINQA----VFPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPA 338 (359)
Q Consensus 264 -~gG~l~~~~~~~~~~~~g~~~~~~~~~~~~~~----~~~~~~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~~l~~~~~ 338 (359)
+.+.+++++ ++.+.+... ...+.....+....++..++|+.+.++...++.++...+....
T Consensus 283 ~p~~a~~~~~--------------~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~ 348 (429)
T PRK06173 283 LTLSATITTE--------------AIAQTICSGEAKCFMHGPTFMANPLACAIAAESIRLLLESPWQQNIQRIEAQLKQE 348 (429)
T ss_pred cccceEEecH--------------HHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 346777766 333333211 0111111246677788888899988764445554443332222
Q ss_pred hhhcccCCCccccCCCC
Q 018231 339 FVSNQNNSENIEEDKGR 355 (359)
Q Consensus 339 ~~~~~~~~~~~~~~~~~ 355 (359)
++.+.+...+++++|+
T Consensus 349 -L~~~~~~~~v~~vRg~ 364 (429)
T PRK06173 349 -LAPAAEFDSVAEVRVL 364 (429)
T ss_pred -HHHhhcCCCeeeeecc
Confidence 2112233456666664
No 354
>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....
Probab=98.93 E-value=2.6e-08 Score=93.94 Aligned_cols=267 Identities=10% Similarity=0.030 Sum_probs=134.6
Q ss_pred CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHhhc---
Q 018231 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALL--- 133 (359)
Q Consensus 58 ~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~al~--- 133 (359)
-.|.+.+++.+.+.... ...... +. .+... .+.+++.+.++-.. ..+.++++++ |+..++....
T Consensus 33 ~~p~i~~ai~~~~~~~~-~~~~~~--~~-~~~~~----~la~~L~~~~p~~~----~~v~f~~sGseAve~Alkla~~~~ 100 (339)
T PF00202_consen 33 NHPEIAEAIAEQANKLN-YVSFSG--FT-HPEAA----ELAEKLAELFPGGL----DRVFFANSGSEAVEAALKLARQYH 100 (339)
T ss_dssp T-HHHHHHHHHHHHHCS-SCSTTT--SE-EHHHH----HHHHHHHHHSSTTE----EEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CccccchhHHHHhhhcc-cccccc--ee-ccchh----hhhhhhhhcccccc----ceeeeccCchHHHHHHHHHhhccc
Confidence 45899999988776521 111010 01 11112 25578888873322 2477766666 8887665443
Q ss_pred -----CCCCeeeecCCCCCcccCcc-----ccccccceeeeeeeeEEEecccCCCC---CCCCHHHHHHH---hhhhCCc
Q 018231 134 -----KPHDRIMALDLPHGGHLSHG-----YQTDTKKISAVSIFFETMPYRLNEST---GYIDYDQLEKS---ATLFRPK 197 (359)
Q Consensus 134 -----~~Gd~Vl~~~~~~~~~~~~~-----~~~~~~~~~~~g~~~~~v~~~~~~~~---~~~d~e~l~~~---i~~~~~k 197 (359)
....+|+.....|.+...-. ...++....-.......+|++.. .. ..-..+++++. ....++.
T Consensus 101 ~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ia 179 (339)
T PF00202_consen 101 NKRAYTGRRKILAFEGSYHGRTLGALSLTGNPPYRKGFGPLYPGVVFVPFPDP-AADEEEQACLNALEELIAALNADEIA 179 (339)
T ss_dssp HHTHHHTTTEEEEETTTB-TSSHHHHHHSSSTHHHTTTCSSSTTEEEEETTCH-HHHHHHHHHHHHHHHHHHHHHGGGEE
T ss_pred ccccccCCceEEEeeeeeeccCcccccccCCccccccccccccccccccCCcc-chhhhHHHHHHHHHHHHHhhcCCcEE
Confidence 24468888876665542100 00011000000011223432210 00 00001112222 2233566
Q ss_pred EEEEcCCC--CCC----hhhHHHHHHHHHHcCCEEEEeccccc-cccccCC--CCCCCCCceEEEeCCCCcCCCCCc-eE
Q 018231 198 LIVAGASA--YAR----LYDYERIRKVCNKQKAIMLADMAHIS-GLVAAGV--IPSPFEYADVVTTTTHKSLRGPRG-AM 267 (359)
Q Consensus 198 ~v~l~~~n--~g~----~~~l~~i~~la~~~~~~vivD~a~~~-g~~~~~~--~~~~~~~~D~v~~s~~K~l~gp~g-G~ 267 (359)
+|++.|-. .|. ..-+++|.++|++||+++|+|++++. |...... ...++ ..|+++++ |.+++.-. |+
T Consensus 180 avivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~~~a~~~~gv-~PDiv~~g--K~l~gG~p~sa 256 (339)
T PF00202_consen 180 AVIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGKFFASEHYGV-DPDIVTFG--KGLGGGLPISA 256 (339)
T ss_dssp EEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSSSSGHHHHTS-SSSEEEEE--GGGGTTSSEEE
T ss_pred EEEEeccccccCccccccchhhehcccccccccceecccccccccccCCccceecccc-cCcccccc--cchhhhhhccc
Confidence 77776433 342 22389999999999999999999862 2221100 01110 26999998 99965433 88
Q ss_pred EEEeCCcchhccCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhccccchhHhhhccccchhhhhcccCCC
Q 018231 268 IFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSE 347 (359)
Q Consensus 268 l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 347 (359)
+++++ ++.+.+........+ .-+..+.++..+.|+.++++...++.++...+.......-..+..
T Consensus 257 v~~~~--------------~i~~~~~~~~~~~T~-~g~p~~~aaa~~~l~~~~~~~~~~~~~~~g~~l~~~L~~l~~~~~ 321 (339)
T PF00202_consen 257 VLGSE--------------EIMEAFQPGSHGSTF-GGNPLSCAAALATLEILEEEDLLERVRELGERLREGLRELAARYP 321 (339)
T ss_dssp EEEEH--------------HHHTTSCTTSSTCTT-TT-HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccc--------------hhhcccccccccccc-ccchHhhhhhhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 88888 445444322211222 234567777778899998875555555554333333322133336
Q ss_pred ccccCCCC
Q 018231 348 NIEEDKGR 355 (359)
Q Consensus 348 ~~~~~~~~ 355 (359)
.+++++|.
T Consensus 322 ~i~~vrg~ 329 (339)
T PF00202_consen 322 LIGEVRGI 329 (339)
T ss_dssp TEEEEEEE
T ss_pred CeEEEeee
Confidence 66666664
No 355
>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=98.92 E-value=6.5e-08 Score=94.94 Aligned_cols=267 Identities=12% Similarity=0.051 Sum_probs=137.6
Q ss_pred CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHhhc---
Q 018231 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALL--- 133 (359)
Q Consensus 58 ~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~al~--- 133 (359)
-+|.|.+++.+.+.. ...... ..+. .+.. . .+.+.+.+++....+ .+.++++++ |+..++....
T Consensus 73 ~~p~v~~Ai~~ql~~-l~~~~~--~~~~-~~~~--~--~lae~L~~~~p~~~~----~v~f~~SGseAve~AlklAr~~~ 140 (460)
T PRK06916 73 QVPELDEAIREQLNK-IAHSTL--LGLA-NVPS--I--LLAEKLIEVVPEGLK----KVFYSDSGATAVEIAIKMAFQYW 140 (460)
T ss_pred CCHHHHHHHHHHHHh-CCCccc--cccC-CHHH--H--HHHHHHHHhCCCCCC----EEEEeCCcHHHHHHHHHHHHHHH
Confidence 478999999888775 211110 0011 1211 2 255777777643222 366665555 8887665331
Q ss_pred ----CC-CCeeeecCCCCCcccCccccc-----cccce--eeeeeeeEEEecccC---CCCC------CCCHHHHHHHhh
Q 018231 134 ----KP-HDRIMALDLPHGGHLSHGYQT-----DTKKI--SAVSIFFETMPYRLN---ESTG------YIDYDQLEKSAT 192 (359)
Q Consensus 134 ----~~-Gd~Vl~~~~~~~~~~~~~~~~-----~~~~~--~~~g~~~~~v~~~~~---~~~~------~~d~e~l~~~i~ 192 (359)
.+ ..+|+.....|.+...-...+ ++... ...+ ...+|++.. +.+. .-+++.+++.++
T Consensus 141 ~~~g~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~--~~~~p~p~~~~~~~~~~~~~~~~~~~~~l~~~l~ 218 (460)
T PRK06916 141 QNKGKPKKQRFVTLKNAYHGDTIGAVSVGAIDLFHQVYSSLLFE--AIKMPYPYTYRSPYGNDKAEIVKKHLEELEELLK 218 (460)
T ss_pred HhcCCCCCcEEEEECCcCCcccHHhHhccCCcccccccCCCCCC--CEEeCCCcccccccCCChHHHHHHHHHHHHHHHH
Confidence 23 367888876665542110000 00000 0001 122322210 0000 123566777775
Q ss_pred h--hCCcEEEEcC--CC-CCCh----hhHHHHHHHHHHcCCEEEEecccc-ccccccC--CCCCCCCCceEEEeCCCCcC
Q 018231 193 L--FRPKLIVAGA--SA-YARL----YDYERIRKVCNKQKAIMLADMAHI-SGLVAAG--VIPSPFEYADVVTTTTHKSL 260 (359)
Q Consensus 193 ~--~~~k~v~l~~--~n-~g~~----~~l~~i~~la~~~~~~vivD~a~~-~g~~~~~--~~~~~~~~~D~v~~s~~K~l 260 (359)
. .++.+|++.| .. .|.+ .-++++.++|++||+++|.|+++. +|..... ....+. ..|+++++ |.+
T Consensus 219 ~~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~GRtG~~~a~~~~gv-~PDiv~~g--K~l 295 (460)
T PRK06916 219 EKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGKMFACEHENV-TPDIMTAG--KGL 295 (460)
T ss_pred hCCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCcCchhhHHHhcCC-CCCeeeee--hhh
Confidence 2 2566777765 22 3422 238899999999999999999985 2322110 011110 26999886 988
Q ss_pred CCC--CceEEEEeCCcchhccCCcchhhhHHHhhccc------cCCCCCCCCcHHHHHHHHHHHHHHhccccchhHhhhc
Q 018231 261 RGP--RGAMIFFRKGVKEINKQGKEVFYDYEEKINQA------VFPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFS 332 (359)
Q Consensus 261 ~gp--~gG~l~~~~~~~~~~~~g~~~~~~~~~~~~~~------~~~~~~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~~ 332 (359)
+|. +-|++++++ ++.+.+... ...+...+.|..+.++..++|+.+.++....+.+...
T Consensus 296 ~gG~~Pi~av~~~~--------------ei~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~l~~~~~~~g 361 (460)
T PRK06916 296 TGGYLPIAITVTTD--------------EIYNAFYGDYEEQKTFFHGHSYTGNPLGCAVALANLELYEKTNLIEQVARKT 361 (460)
T ss_pred hcCccccceeeecH--------------HHHHHhhccccccCccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 654 337778877 333332211 1111122236677788888899888765555655554
Q ss_pred cccchhhhhcccCCCccccCCCCC
Q 018231 333 LHVYPAFVSNQNNSENIEEDKGRP 356 (359)
Q Consensus 333 l~~~~~~~~~~~~~~~~~~~~~~~ 356 (359)
-+..... +.+.....+++++|+-
T Consensus 362 ~~l~~~l-~~l~~~~~v~~vrG~G 384 (460)
T PRK06916 362 EYVATQL-EDLFALKHVGDIRQLG 384 (460)
T ss_pred HHHHHHH-HHhhcCCCeEEeecCC
Confidence 4333222 2222245678888764
No 356
>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=98.92 E-value=8.9e-08 Score=93.98 Aligned_cols=269 Identities=11% Similarity=0.109 Sum_probs=139.7
Q ss_pred CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCC--CCCceeEEE--CCChHHHHHHHHhh-
Q 018231 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDP--EKWGVNVQS--LSGSPSNFQVYTAL- 132 (359)
Q Consensus 58 ~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~--~~~~~~v~~--tsG~~a~~~~~~al- 132 (359)
-+|.|.+++.+.+.+... +... .+. .+...+ +.+++.+.....- .. .+++ .||+.|+..++...
T Consensus 80 ~~p~v~~Ai~~ql~~~~~--~~~~-~~~-~~~~~~----la~~L~~~~p~~~~~~~---~v~f~~~SGSEAve~AlklAr 148 (464)
T PRK06938 80 NHPVVIEAIQQVLADELP--LHTL-DLT-TPVKDQ----FVQDLFASLPEAFAREA---KIQFCGPTGTDAVEAALKLVK 148 (464)
T ss_pred CCHHHHHHHHHHHHhhhc--cccc-ccC-CHHHHH----HHHHHHHhCcccccccc---eEEEeCCCcHHHHHHHHHHHH
Confidence 478999999988764221 1100 111 122222 3355555543211 01 2544 37777888766543
Q ss_pred -cCCCCeeeecCCCCCcccCccccc-----ccccee-eeeeeeEEEecccCCC-CC--------CCCHHHHHHHhhhh--
Q 018231 133 -LKPHDRIMALDLPHGGHLSHGYQT-----DTKKIS-AVSIFFETMPYRLNES-TG--------YIDYDQLEKSATLF-- 194 (359)
Q Consensus 133 -~~~Gd~Vl~~~~~~~~~~~~~~~~-----~~~~~~-~~g~~~~~v~~~~~~~-~~--------~~d~e~l~~~i~~~-- 194 (359)
.....+|+.....|.+...-.... ++.... +. ..+..++++.... .+ ..+++.+++.+.+.
T Consensus 149 ~~tgr~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~ 227 (464)
T PRK06938 149 TATGRSTVLSFQGGYHGMSQGALSLMGNLGPKKPLGALL-PGVQFLPYPYDYRCPFGLGGEAGVRANLHYLENLLDDPES 227 (464)
T ss_pred HhhCCCeEEEECCccCCccHHHHhhcCCccccccCCCCC-CCcEEeCCCccccccccCchhhHHHHHHHHHHHHHHhhcc
Confidence 233467887776655542111100 000000 00 0122343322100 00 12367778877631
Q ss_pred ---CCcEEEEcCCC--CCCh----hhHHHHHHHHHHcCCEEEEecccc-cccccc--CCCCCCCCCceEEEeCCCCcCCC
Q 018231 195 ---RPKLIVAGASA--YARL----YDYERIRKVCNKQKAIMLADMAHI-SGLVAA--GVIPSPFEYADVVTTTTHKSLRG 262 (359)
Q Consensus 195 ---~~k~v~l~~~n--~g~~----~~l~~i~~la~~~~~~vivD~a~~-~g~~~~--~~~~~~~~~~D~v~~s~~K~l~g 262 (359)
++.+|++.|-. -|.+ .-++++.++|++||+++|.|++++ +|.... .....+. ..|+++++ |.++|
T Consensus 228 ~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~e~~gv-~PDiv~~g--Kglgg 304 (464)
T PRK06938 228 GVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGKMFAFEHAGI-IPDVVVLS--KAIGG 304 (464)
T ss_pred CCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcHHHHHHhcCC-CCCEEEee--ccccC
Confidence 35677775332 3422 238899999999999999999985 332210 0111111 26999997 99865
Q ss_pred CCc-eEEEEeCCcchhccCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhccccchhHhhhccccchhhhh
Q 018231 263 PRG-AMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVS 341 (359)
Q Consensus 263 p~g-G~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~~l~~~~~~~~ 341 (359)
... |+++.++ ++ +.+........+ +.|..+.+|..+.|+.+.++....+.++..-+.......
T Consensus 305 G~PlsAv~~~~--------------~~-~~~~~~~~~~T~-~gnpla~Aaa~a~L~~l~~~~l~~~~~~~G~~l~~~L~~ 368 (464)
T PRK06938 305 SLPLAVVVYRE--------------WL-DTWQPGAHAGTF-RGNQMAMAAGSATLRYIKEHRLAEHAAAMGERLREHLRQ 368 (464)
T ss_pred CCceEEEeehh--------------Hh-hccCCCCCCCCC-CcCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 333 7777776 32 222211111122 345566777778899998776666766664444333322
Q ss_pred cccCCCccccCCCCCC
Q 018231 342 NQNNSENIEEDKGRPC 357 (359)
Q Consensus 342 ~~~~~~~~~~~~~~~~ 357 (359)
-+.....+++++|+.+
T Consensus 369 l~~~~~~i~~VrG~Gl 384 (464)
T PRK06938 369 LQRDYPQLGDVRGRGL 384 (464)
T ss_pred HHHhCCCeeeeeccce
Confidence 1334467889888764
No 357
>PRK06917 hypothetical protein; Provisional
Probab=98.91 E-value=1.8e-07 Score=91.40 Aligned_cols=269 Identities=13% Similarity=0.054 Sum_probs=138.5
Q ss_pred CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECC-ChHHHHHHHHhhc---
Q 018231 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLS-GSPSNFQVYTALL--- 133 (359)
Q Consensus 58 ~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~ts-G~~a~~~~~~al~--- 133 (359)
-.|.|.+++.+.+.... ..+.. .+. .+ .+..+.+++.+.+....+ .+++++ |+.|+..++....
T Consensus 48 ~hp~v~~Ai~~ql~~~~-~~~~~--~~~-~~----~~~~lae~L~~~~p~~~~----~v~f~~sGsEAve~AlklAr~~~ 115 (447)
T PRK06917 48 GVKEIADAIKEQAEEVS-FVYRS--QFT-SE----PAEKLAKKLSDLSPGDLN----WSFFVNSGSEANETAMKIAIQHF 115 (447)
T ss_pred CCHHHHHHHHHHHhhCc-Ccccc--ccC-CH----HHHHHHHHHHHhCCCCCC----EEEEeCChHHHHHHHHHHHHHHH
Confidence 47899999988877521 11110 011 11 122255777777643222 366655 5558887766431
Q ss_pred -----CCCCeeeecCCCCCcccCccccc-----cccc--eeeeeeeeEEEecccCC-----CC-C---CCCHHHHHHHhh
Q 018231 134 -----KPHDRIMALDLPHGGHLSHGYQT-----DTKK--ISAVSIFFETMPYRLNE-----ST-G---YIDYDQLEKSAT 192 (359)
Q Consensus 134 -----~~Gd~Vl~~~~~~~~~~~~~~~~-----~~~~--~~~~g~~~~~v~~~~~~-----~~-~---~~d~e~l~~~i~ 192 (359)
....+|+.....|.+...-.... .+.. ....+ +..++.+... ++ . .-+++.+++.++
T Consensus 116 ~~rg~t~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~i~ 193 (447)
T PRK06917 116 QERGIQGKHKILSRWMSYHGITMGALSMSGHPLRRQRFVSLLED--YPTISAPYCYRCPVQKVYPTCQLACATELETAIE 193 (447)
T ss_pred HhcCCCCCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCC--CeEeCCCcccccccCCChHHHHHHHHHHHHHHHH
Confidence 22367887776555542111000 0000 00001 1112211100 00 0 013456777775
Q ss_pred hh---CCcEEEEcCC--CCC-C----hhhHHHHHHHHHHcCCEEEEecccc-ccccccCC--CCCCCCCceEEEeCCCCc
Q 018231 193 LF---RPKLIVAGAS--AYA-R----LYDYERIRKVCNKQKAIMLADMAHI-SGLVAAGV--IPSPFEYADVVTTTTHKS 259 (359)
Q Consensus 193 ~~---~~k~v~l~~~--n~g-~----~~~l~~i~~la~~~~~~vivD~a~~-~g~~~~~~--~~~~~~~~D~v~~s~~K~ 259 (359)
.. ++.+|++.|- +.| . ..-+++|.++|++||+++|.|++++ +|...... ...+. ..|+++++ |.
T Consensus 194 ~~~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGRtG~~~a~~~~gv-~PDi~~~g--K~ 270 (447)
T PRK06917 194 RIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTGAMFAMEHWGV-EPDIMTLG--KG 270 (447)
T ss_pred hcCCCceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcCcccchhhHHhcCC-CCCEEEee--eh
Confidence 32 4667777642 223 2 2338899999999999999999986 22211100 11111 26998886 99
Q ss_pred CCCC--CceEEEEeCCcchhccCCcchhhhHHHhhcccc---CCCCCCCCcHHHHHHHHHHHHHHhccccchhHhhhccc
Q 018231 260 LRGP--RGAMIFFRKGVKEINKQGKEVFYDYEEKINQAV---FPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLH 334 (359)
Q Consensus 260 l~gp--~gG~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~~l~ 334 (359)
+++. +.|++++++ ++.+.+.... ..+...+.|..+.+|..++++.+.++....+.+...-+
T Consensus 271 l~~G~~Pi~a~~~~~--------------~i~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~l~~~~~~~g~~ 336 (447)
T PRK06917 271 LGAGYTPIAATVVSD--------------RVMEPILRGSRSIMSGHTLSANPLSAATALAVLEYMEKHNLPEKAAEKGEY 336 (447)
T ss_pred hccCCcceEEEEEcH--------------HHHHHHhccCcccccccCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 9764 457788877 4444332211 11112234667788888889998876555665555433
Q ss_pred cchhhhhcccCCCccccCCCCCC
Q 018231 335 VYPAFVSNQNNSENIEEDKGRPC 357 (359)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~ 357 (359)
.......-......+++++|+..
T Consensus 337 l~~~L~~l~~~~~~i~~vrG~Gl 359 (447)
T PRK06917 337 LIKGLQKVQQQSTIIGDVRGKGL 359 (447)
T ss_pred HHHHHHHHHhcCCCEEEEeecce
Confidence 33322211333456788887743
No 358
>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase. Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.
Probab=98.90 E-value=2.2e-07 Score=90.04 Aligned_cols=242 Identities=12% Similarity=0.034 Sum_probs=121.9
Q ss_pred CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCC--CCCCceeEEE--CCChHHHHHHHHhh-
Q 018231 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLD--PEKWGVNVQS--LSGSPSNFQVYTAL- 132 (359)
Q Consensus 58 ~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~--~~~~~~~v~~--tsG~~a~~~~~~al- 132 (359)
-+|.|.+++.+.+... ++.....+. .+... .+.+++.+....+ ... .++| .||+.++..++...
T Consensus 52 ~~p~v~~ai~~ql~~~---~~~~~~~~~-~~~~~----~lae~l~~~~~~~~~~~~---~~~f~~~sGseA~e~AlklAr 120 (412)
T TIGR02407 52 NNPKLKQALIDYLADD---GIIHSLDMA-TEAKR----EFLETFNEIILKPRGLDY---KVQFPGPTGTNAVESALKLAR 120 (412)
T ss_pred CCHHHHHHHHHHHhhc---cceeccccC-cHHHH----HHHHHHHHhccCccCCCc---eEEEeCCCchHHHHHHHHHHh
Confidence 4799999998877641 111000000 11111 2446666653211 111 2544 46777888766543
Q ss_pred -cCCCCeeeecCCCCCcccCccc-----cccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhh-----hCCcEEEE
Q 018231 133 -LKPHDRIMALDLPHGGHLSHGY-----QTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL-----FRPKLIVA 201 (359)
Q Consensus 133 -~~~Gd~Vl~~~~~~~~~~~~~~-----~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~-----~~~k~v~l 201 (359)
.....+|+.....|.+...-.. ..++.........+..+|++.......-+++.+++.+.+ .++.+|++
T Consensus 121 ~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~aavi~ 200 (412)
T TIGR02407 121 KVTGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDGYLGGDVDTIAYFEKLLEDSSSGVDLPAAVIL 200 (412)
T ss_pred hhcCCCeEEEECCCcCCchHHHHHhcCCcccccCCCCCCCCeEECCCCCccccchhHHHHHHHHHHhccCCCCceEEEEe
Confidence 2344678877766555421100 001111000001122233211000001246778888863 14567776
Q ss_pred c--CCCCCC----hhhHHHHHHHHHHcCCEEEEecccc-cccc----ccCCCCCCCCCceEEEeCCCCcCCC-C-CceEE
Q 018231 202 G--ASAYAR----LYDYERIRKVCNKQKAIMLADMAHI-SGLV----AAGVIPSPFEYADVVTTTTHKSLRG-P-RGAMI 268 (359)
Q Consensus 202 ~--~~n~g~----~~~l~~i~~la~~~~~~vivD~a~~-~g~~----~~~~~~~~~~~~D~v~~s~~K~l~g-p-~gG~l 268 (359)
. ..+.|. ..-+++|.++|++||+++|.|++++ +|.. ....... ..|++++| |++++ . +-|++
T Consensus 201 Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~~~~~v---~PDi~~~~--K~lg~~G~pigav 275 (412)
T TIGR02407 201 ETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGTFFSFEPAGI---EPDIVCLS--KSISGYGLPLALT 275 (412)
T ss_pred ccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhHHhcccCC---CCCEEEec--hhccCCccceeEE
Confidence 5 223443 3348899999999999999999986 3321 1111111 26888876 99853 2 33888
Q ss_pred EEeCCcchhccCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHH-HhccccchhHhhh
Q 018231 269 FFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQ-VCTLITFSHIHVF 331 (359)
Q Consensus 269 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~-~~~~~~~~~~~~~ 331 (359)
+++++ . +.+... ......+.|..+.++..++++. +.++....+.+..
T Consensus 276 ~~~~~--------------~-~~~~~~-~~~~T~~gnpl~~aaa~a~l~~~i~~~~l~~~~~~~ 323 (412)
T TIGR02407 276 LIKPE--------------L-DVWKPG-EHNGTFRGNNLAFVTATAALEYYWSDDAFEKAVQRK 323 (412)
T ss_pred EEchh--------------h-hccCCC-ccCCCCCccHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 88773 2 222211 1111123455666777788885 5554333444443
No 359
>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases. This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.
Probab=98.90 E-value=2.1e-07 Score=90.96 Aligned_cols=277 Identities=10% Similarity=0.008 Sum_probs=139.4
Q ss_pred cCceeeCCCC-----CCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCC-CCCCceeEEE-C
Q 018231 47 KGLELIPSEN-----FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLD-PEKWGVNVQS-L 119 (359)
Q Consensus 47 ~~i~l~~~~~-----~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~-~~~~~~~v~~-t 119 (359)
..|++..+-. --+|.|.+++.+.+.... +....++. .+....+.+++.+++... ... ..+++ +
T Consensus 40 ~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~---~~~~~~~~-----~~~~~~lae~L~~~~p~~~~~~--~~~f~~~ 109 (442)
T TIGR00709 40 EYLDFLAGAGTLALGHNHPNMKQKILDYLQSGL---PLHTLDLT-----TPLKDAFIEALLNIIPKRKMDY--KLQFPGP 109 (442)
T ss_pred EEEEccccHhhhcCCCCCHHHHHHHHHHHHhcc---CccccccC-----cHHHHHHHHHHHHhCCCcCCCc--cEEEeCC
Confidence 3456654322 247899999988776521 00000111 112222557777776432 111 12454 4
Q ss_pred CChHHHHHHHHhh--cCCCCeeeecCCCCCcccCccccc-----cccc--eeeeeeeeEEEecccCCCCCCC--------
Q 018231 120 SGSPSNFQVYTAL--LKPHDRIMALDLPHGGHLSHGYQT-----DTKK--ISAVSIFFETMPYRLNESTGYI-------- 182 (359)
Q Consensus 120 sG~~a~~~~~~al--~~~Gd~Vl~~~~~~~~~~~~~~~~-----~~~~--~~~~g~~~~~v~~~~~~~~~~~-------- 182 (359)
||+.|+..++... .....+|+.....|.+...-.... ++.. ....+ +..++++. ....
T Consensus 110 sGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~--~~~~~~~~---~~~~~~~~~~~~ 184 (442)
T TIGR00709 110 SGADAVEAAIKLAKTYTGRTNVISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPG--VQFMPYPH---EYRCPFGIGGEA 184 (442)
T ss_pred CHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCchHHHHhhcCChhhhccCCCCCCC--cEEeCCCc---cccccccCCchh
Confidence 6666888766543 233467887776555542111100 0000 00111 12222211 1111
Q ss_pred CH----HHHHHHhhh-----hCCcEEEEc--CCCCCCh----hhHHHHHHHHHHcCCEEEEecccc-cccccc--CCCCC
Q 018231 183 DY----DQLEKSATL-----FRPKLIVAG--ASAYARL----YDYERIRKVCNKQKAIMLADMAHI-SGLVAA--GVIPS 244 (359)
Q Consensus 183 d~----e~l~~~i~~-----~~~k~v~l~--~~n~g~~----~~l~~i~~la~~~~~~vivD~a~~-~g~~~~--~~~~~ 244 (359)
+. +.+++.+.. .++.++++. +.+.|.. .-+++|.++|++||+++|.|+++. +|.... .....
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~ 264 (442)
T TIGR00709 185 GSNASIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGTMFAFEHA 264 (442)
T ss_pred HHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHHc
Confidence 11 223333321 246677775 2333422 248899999999999999999986 332211 00111
Q ss_pred CCCCceEEEeCCCCcCCCC-CceEEEEeCCcchhccCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhccc
Q 018231 245 PFEYADVVTTTTHKSLRGP-RGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLI 323 (359)
Q Consensus 245 ~~~~~D~v~~s~~K~l~gp-~gG~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~~~ 323 (359)
+. ..|++++| |.+++. +-|++++++ + .+.+... ..+...+.|..+.+|..++|+.+.++.
T Consensus 265 gv-~PDiv~~g--K~l~~G~Pigav~~~~--------------~-~~~~~~~-~~~~T~~gnpla~aaa~a~L~~i~~~~ 325 (442)
T TIGR00709 265 GI-EPDFVVMS--KAVGGGLPLAVLLIAP--------------E-FDAWQPA-GHTGTFRGNQLAMVTGTEALNYWKDDN 325 (442)
T ss_pred CC-CCcEEEEc--ccccCCcccEEEEEch--------------H-HhccCCC-cCCCCCCcCHHHHHHHHHHHHHHHhcC
Confidence 11 26999975 998653 238888876 3 2222111 111223456677788888899887765
Q ss_pred cchhHhhhccccchhhhhcccCCCccccCCCCCC
Q 018231 324 TFSHIHVFSLHVYPAFVSNQNNSENIEEDKGRPC 357 (359)
Q Consensus 324 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 357 (359)
..++.++..-.....+-.-+.....+++++|+-+
T Consensus 326 l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Gl 359 (442)
T TIGR00709 326 LAQNAQERGERITSFLDDMIKEHPCIGNVRGRGL 359 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCeeeeeccce
Confidence 5555555443333222211334567888888743
No 360
>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase. All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.
Probab=98.90 E-value=1.8e-07 Score=91.10 Aligned_cols=268 Identities=10% Similarity=0.039 Sum_probs=133.5
Q ss_pred CCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEEC-CChHHHHHHHHhhc--
Q 018231 57 FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSL-SGSPSNFQVYTALL-- 133 (359)
Q Consensus 57 ~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~t-sG~~a~~~~~~al~-- 133 (359)
--+|.+.+++.+.+.. +...... .+.. + ..++ +.+++.++++..-+ .+.++ ||+.++..++....
T Consensus 61 h~~p~v~~ai~~~~~~-~~~~~~~--~~~~-~--~~~~--la~~l~~~~~~~~~----~v~f~~sGseA~e~AlklAr~~ 128 (427)
T TIGR00508 61 YNHPRLNAAAQKQIDK-MSHVMFG--GFTH-K--PAIE--LCQKLVKMTPNALD----CVFLADSGSVAVEVALKMALQY 128 (427)
T ss_pred CCCHHHHHHHHHHHHh-cCCcccc--ccCC-H--HHHH--HHHHHHhhCCCCCC----EEEEeCCcHHHHHHHHHHHHHH
Confidence 3468999999888765 2101110 0111 1 1222 55777777653322 36665 55558776665432
Q ss_pred -----CC-CCeeeecCCCCCcccCcccccccc-c-e--eeeee--eeEEEecccCCCC--C-CCCHHHHHHHhhhh--CC
Q 018231 134 -----KP-HDRIMALDLPHGGHLSHGYQTDTK-K-I--SAVSI--FFETMPYRLNEST--G-YIDYDQLEKSATLF--RP 196 (359)
Q Consensus 134 -----~~-Gd~Vl~~~~~~~~~~~~~~~~~~~-~-~--~~~g~--~~~~v~~~~~~~~--~-~~d~e~l~~~i~~~--~~ 196 (359)
.+ ..+|+.....|.+...-...+-.. . . ...+. ....++.+...-. + .-|++++++.+... +.
T Consensus 129 ~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~l~~~~~~v 208 (427)
T TIGR00508 129 WQAKGEKNRQKFLTIRSGYHGDTFGAMSVCDPENSMHSLYKGYLPEQIFAPAPQNRFDEEWNEEAITPLAKLMELHSDEI 208 (427)
T ss_pred HHhhCCCCccEEEEEcCCcCCccHhhhcccCCcccccccccccCCCCeEcCCCCccccchhHHHHHHHHHHHHHhcCCcE
Confidence 12 367888876666542111100000 0 0 00000 0111221111000 0 11567777777531 45
Q ss_pred cEEEEcC--CCCC-----ChhhHHHHHHHHHHcCCEEEEeccccccccccCC----CCCCCCCceEEEeCCCCcCCCC--
Q 018231 197 KLIVAGA--SAYA-----RLYDYERIRKVCNKQKAIMLADMAHISGLVAAGV----IPSPFEYADVVTTTTHKSLRGP-- 263 (359)
Q Consensus 197 k~v~l~~--~n~g-----~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~----~~~~~~~~D~v~~s~~K~l~gp-- 263 (359)
.+|++.| ...| ...++++|.++|++||+++|+|++| .|.-..+. ...+. ..|++++ .|.|+|.
T Consensus 209 aavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~-tG~Gr~G~~~~~~~~~v-~pDi~~~--gK~l~gG~~ 284 (427)
T TIGR00508 209 AAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIA-TGFGRTGKLFACEHAGV-VPDILCV--GKALTGGYM 284 (427)
T ss_pred EEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccc-cCCCcCCccchhhhcCC-CCCEEEe--chhhhcCcc
Confidence 5666664 4443 3467999999999999999999998 44311111 01111 3688886 5998543
Q ss_pred CceEEEEeCCcchhccCCcchhhhHHHhhcccc----CCCCCCCCcHHHHHHHHHHHHHHhccccchhHhhhccccchhh
Q 018231 264 RGAMIFFRKGVKEINKQGKEVFYDYEEKINQAV----FPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAF 339 (359)
Q Consensus 264 ~gG~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~----~~~~~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~~l~~~~~~ 339 (359)
+.+.+++++ ++.+.+.... .....-..|..+.++..++|+.+.++....+.+...-+.....
T Consensus 285 p~~a~~~~~--------------~~~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L 350 (427)
T TIGR00508 285 TLSATVTTD--------------KVAQTISSGEAGCFMHGPTFMGNPLACAVAEASLAILLEGEWQKQVSAIENQLKREL 350 (427)
T ss_pred cceEEEEcH--------------HHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 336677766 4444443211 0111112357777888888998876543344444433332222
Q ss_pred hhcccCCCccccCCCC
Q 018231 340 VSNQNNSENIEEDKGR 355 (359)
Q Consensus 340 ~~~~~~~~~~~~~~~~ 355 (359)
. .+.....+++++|+
T Consensus 351 ~-~l~~~~~i~~vrg~ 365 (427)
T TIGR00508 351 S-PLRKNPVVKDVRVL 365 (427)
T ss_pred H-HhhcCCCEEeEecc
Confidence 1 11112335666655
No 361
>KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism]
Probab=98.90 E-value=3e-09 Score=98.49 Aligned_cols=167 Identities=20% Similarity=0.192 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHhh---cCCC----------Ceeeec-CCCCCcccCcccccc
Q 018231 93 AESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTAL---LKPH----------DRIMAL-DLPHGGHLSHGYQTD 157 (359)
Q Consensus 93 l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~al---~~~G----------d~Vl~~-~~~~~~~~~~~~~~~ 157 (359)
+|..+-.++.+..|.+... .=++++|++ +|+.++..- .-|+ +-|+.. +.+|.|+..
T Consensus 142 mE~~vl~km~~ivGw~~~~---DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSeesHYSi~k------ 212 (510)
T KOG0629|consen 142 MEEEVLAKMREIVGWEEGG---DGIFAPGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSEESHYSIKK------ 212 (510)
T ss_pred ehHHHHHHHHHHhCCCCCC---CceecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEecccchhhHHH------
Confidence 4455667888899997653 256677777 776555432 1122 334433 333444322
Q ss_pred ccceeeee---eeeEEEecccCCCCCCCCHHHHHHHhhhhCCc-----EEEEc-CCC-CCChhhHHHHHHHHHHcCCEEE
Q 018231 158 TKKISAVS---IFFETMPYRLNESTGYIDYDQLEKSATLFRPK-----LIVAG-ASA-YARLYDYERIRKVCNKQKAIML 227 (359)
Q Consensus 158 ~~~~~~~g---~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k-----~v~l~-~~n-~g~~~~l~~i~~la~~~~~~vi 227 (359)
++.+.| -.++.| +.+ +.+.+++++||+.|.+.+-+ .|-.+ .+. +|...|++.|+++|++|++|++
T Consensus 213 --aAa~lg~gtd~c~~v--~t~-e~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFDdL~~iadiC~k~~lWmH 287 (510)
T KOG0629|consen 213 --AAAFLGLGTDHCIKV--KTD-ERGKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFDDLNGIADICEKHKLWMH 287 (510)
T ss_pred --HHHHhccCCceeEEe--ccc-ccCccchHHHHHHHHHHHhcCCCCeEEEecCCceeeeccCcHHHHHHHHHhcCEEEE
Confidence 233333 224344 355 67899999999998653333 33333 333 6899999999999999999999
Q ss_pred EeccccccccccCCCCCCC---CCceEEEeCCCCcCCCCCc-eEEEEeCC
Q 018231 228 ADMAHISGLVAAGVIPSPF---EYADVVTTTTHKSLRGPRG-AMIFFRKG 273 (359)
Q Consensus 228 vD~a~~~g~~~~~~~~~~~---~~~D~v~~s~~K~l~gp~g-G~l~~~~~ 273 (359)
+|+|...|.+-...+...+ +-+|.++.++||++++|-. +.++++.+
T Consensus 288 vDAAwGGglLmS~k~R~kl~Giera~SvtwnpHK~~gaplqCsa~l~r~~ 337 (510)
T KOG0629|consen 288 VDAAWGGGLLMSRKHRHKLTGIERANSVTWNPHKLMGAPLQCSAFLTREE 337 (510)
T ss_pred eecccccccccChhhHhhccCccccCceeecHHHhhcCcchhhHHHHHHH
Confidence 9999877666443333222 3589999999999888776 77777764
No 362
>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]
Probab=98.88 E-value=2.8e-08 Score=91.11 Aligned_cols=263 Identities=12% Similarity=0.063 Sum_probs=150.5
Q ss_pred cCceeeCCCCCCcHHHHHHHHhhhhccCCCCCCC--CcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-
Q 018231 47 KGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPG--ARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP- 123 (359)
Q Consensus 47 ~~i~l~~~~~~~~~~v~~al~~~~~~~~~~g~~~--~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~- 123 (359)
+..++.+|+...|++|++...+.+.+....|.+- ..+.+ +....+-..+++.++++++++.+. .|.|..|+.
T Consensus 5 ~~~nFsaGPa~lp~~vL~~a~~e~~~~~g~g~svme~SHRs--k~~~~v~~~a~~~lreLl~iPd~Y---~VlflqGGat 79 (365)
T COG1932 5 RVYNFSAGPAALPPEVLQQAQKELLDWNGLGMSVMEISHRS--KEFKNVLEEAEKDLRELLNIPDDY---KVLFLQGGAT 79 (365)
T ss_pred CCCCCCCCcccCCHHHHHHHHHHHhhhccCCcceeeecccc--HHHHHHHHHHHHHHHHHhCCCCCc---eEEEEcCccH
Confidence 4578999999999999999888777643223221 11111 223333344789999999997665 688877766
Q ss_pred -HHHHHHHhhcCCCCe--eeecCCCCCcccCccccccccceeeeeeeeEEEecc-cCCC-CCCCCHHHHHHHhhhhCCcE
Q 018231 124 -SNFQVYTALLKPHDR--IMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYR-LNES-TGYIDYDQLEKSATLFRPKL 198 (359)
Q Consensus 124 -a~~~~~~al~~~Gd~--Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~-~~~~d~e~l~~~i~~~~~k~ 198 (359)
...++...++.++.. |.+-.-+..+. . -+...+......... ...+ +..+|++.+. +.+ +..-
T Consensus 80 ~qf~~~p~nLl~~~~~~yv~~g~Ws~~a~--------~-eA~~~~~~~~~~~~~~~~~~~~~iP~~~~~~--~~~-~~ay 147 (365)
T COG1932 80 GQFAMAPMNLLGKRGTDYVDTGAWSEFAI--------K-EAKKVGKQPKLIDARIEEAGYGSIPDLSKWD--FSD-NDAY 147 (365)
T ss_pred HHHHHHHHhhhcccCceeEeeeehhHhHH--------H-HHHHhcccccccccceeccCccCCCChhhcc--cCC-CccE
Confidence 566677788765543 44322111000 0 111111101111101 1111 2245555543 333 3444
Q ss_pred EEEcCCC--CCChhh-HHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEeCCCCcCCCCCc-eEEEEeCCc
Q 018231 199 IVAGASA--YARLYD-YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGV 274 (359)
Q Consensus 199 v~l~~~n--~g~~~~-l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~ 274 (359)
|.+|+++ +|...+ ...+ .. +.++++|.+..+...++|+.+ .|++.++.+|.+ ||.| +++++++++
T Consensus 148 v~~~~NeTi~Gv~v~~~p~~---~~--~~~~v~D~SS~ilsr~iDvsk-----~dviyagaQKnl-GpaGltvvIvr~~~ 216 (365)
T COG1932 148 VHFCWNETISGVEVPELPDI---GS--DGLLVADASSAILSRPIDVSK-----YDVIYAGAQKNL-GPAGLTVVIVRPDL 216 (365)
T ss_pred EEEecCCcccceEccCCCCC---CC--CceEEEecccHHhcCCCChhH-----cceEEEehhhcc-CccceEEEEEcHHH
Confidence 6677555 464443 2221 11 278999999888888877766 689999999988 7778 999999853
Q ss_pred chhccCC-cchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhccccchhHhhh---ccccchhhh
Q 018231 275 KEINKQG-KEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVF---SLHVYPAFV 340 (359)
Q Consensus 275 ~~~~~~g-~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~---~l~~~~~~~ 340 (359)
-.+...- .+..+++.. .......+-||+.++++-+..+++.+.+.++.+.+.+. +.+.+..++
T Consensus 217 l~r~~~~~~P~if~y~~---~~~~~s~yNTPptfa~y~~~lv~~Wlk~~GGl~~~~~rn~~ka~~LY~~i 283 (365)
T COG1932 217 LERAESYTLPSIFDYLT---HADNGSMYNTPPTFAWYLLGLVFKWLKSQGGLEALEARNQAKAQLLYDWI 283 (365)
T ss_pred HhcccccCCchHhhchh---hhccCCccCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 2111100 111111111 11122345799999999999999999988776655444 444455554
No 363
>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated
Probab=98.88 E-value=2.9e-07 Score=89.57 Aligned_cols=201 Identities=15% Similarity=0.091 Sum_probs=101.7
Q ss_pred CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEE-C-CChHHHHHHHHhh--c
Q 018231 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQS-L-SGSPSNFQVYTAL--L 133 (359)
Q Consensus 58 ~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~-t-sG~~a~~~~~~al--~ 133 (359)
-+|.|.+++.+.+... ++.....+. .+... .+.+++.+.+..+... ...++| + ||+.|+..++... .
T Consensus 56 ~~p~v~~ai~~ql~~~---~~~~~~~~~-~~~~~----~lae~l~~~~~~~~~~-~~~~~f~~~sGseA~e~AlklAr~~ 126 (425)
T PRK09264 56 NNPVLKQALIDYLQRD---GITHGLDMH-TTAKR----EFLETFEETILKPRGL-DYKVQFTGPTGTNAVEAALKLARKV 126 (425)
T ss_pred CCHHHHHHHHHHHHhc---ccccccccC-cHHHH----HHHHHHHHhhcCCcCC-CceEEEeCCCHHHHHHHHHHHHHHh
Confidence 4789999998877641 110000011 11111 2446666654221100 002555 3 6666888766543 2
Q ss_pred CCCCeeeecCCCCCcccCc-----cccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhh-----CCcEEEEc-
Q 018231 134 KPHDRIMALDLPHGGHLSH-----GYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF-----RPKLIVAG- 202 (359)
Q Consensus 134 ~~Gd~Vl~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~-----~~k~v~l~- 202 (359)
....+|+.....|.+...- ....++......-..+..+|++.......-|++++++.+.+. ++.+|++.
T Consensus 127 tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~~aavi~Ep 206 (425)
T PRK09264 127 TGRTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMPYDGYFGGDVDTLAYLEKLLEDSSSGVDLPAAVIVET 206 (425)
T ss_pred cCCCeEEEECCccCCccHHHHHhcCCcccccCCCCCCCCeEEeCCCCccccchhHHHHHHHHHHhccCCCCceEEEEEec
Confidence 3346788777655554210 000011100000001233443211000012678888888531 35567665
Q ss_pred -CCCCCC----hhhHHHHHHHHHHcCCEEEEecccc-cccc----ccCCCCCCCCCceEEEeCCCCcCCC--CCceEEEE
Q 018231 203 -ASAYAR----LYDYERIRKVCNKQKAIMLADMAHI-SGLV----AAGVIPSPFEYADVVTTTTHKSLRG--PRGAMIFF 270 (359)
Q Consensus 203 -~~n~g~----~~~l~~i~~la~~~~~~vivD~a~~-~g~~----~~~~~~~~~~~~D~v~~s~~K~l~g--p~gG~l~~ 270 (359)
.++.|. ...+++|.++|++||+++|+|++|+ +|.. ....... ..|++++| |.+++ .+-|++++
T Consensus 207 v~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~~~~~~~v---~PDi~t~~--K~l~~~G~pigav~~ 281 (425)
T PRK09264 207 VQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGTFFSFERAGI---TPDIVTLS--KSISGYGLPMALVLI 281 (425)
T ss_pred ccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCccccHHHHHhhcCC---CCCEEEec--cccCCCccceEEEEE
Confidence 333442 2369999999999999999999995 2211 1111111 25888776 98853 22288888
Q ss_pred eC
Q 018231 271 RK 272 (359)
Q Consensus 271 ~~ 272 (359)
++
T Consensus 282 ~~ 283 (425)
T PRK09264 282 KP 283 (425)
T ss_pred ch
Confidence 77
No 364
>PRK06148 hypothetical protein; Provisional
Probab=98.85 E-value=2.8e-07 Score=98.49 Aligned_cols=268 Identities=11% Similarity=0.071 Sum_probs=140.6
Q ss_pred CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECC-ChHHHHHHHHhh--cC
Q 018231 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLS-GSPSNFQVYTAL--LK 134 (359)
Q Consensus 58 ~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~ts-G~~a~~~~~~al--~~ 134 (359)
-.|.|.+|+.+.+... + ... .+.. +... .+.+++.+.+...-+ .+.|++ |+.|+.++++.. ..
T Consensus 639 ~hp~v~~Ai~~q~~~l-~---~~~-~~~~-~~~~----~lAe~L~~~~p~~~~----~v~f~nSGsEA~e~AlklAr~~t 704 (1013)
T PRK06148 639 AHPRVVAAAARQAARL-N---TNT-RYLH-DAIV----AYAERLTATLPDGLT----VAFFVNSGSEANSLALRLARAHT 704 (1013)
T ss_pred CCHHHHHHHHHHHhhc-C---CcC-CcCC-HHHH----HHHHHHHHhCCCCcC----EEEEeCCcHHHHHHHHHHHHHhc
Confidence 3689999998877652 0 011 1111 1111 255777776643222 366655 444888766543 23
Q ss_pred CCCeeeecCCCCCcccCcccc----ccccc-eeeeeeeeEEEecccC-CCCCC-CC-------HHHHHHHhh---h--hC
Q 018231 135 PHDRIMALDLPHGGHLSHGYQ----TDTKK-ISAVSIFFETMPYRLN-ESTGY-ID-------YDQLEKSAT---L--FR 195 (359)
Q Consensus 135 ~Gd~Vl~~~~~~~~~~~~~~~----~~~~~-~~~~g~~~~~v~~~~~-~~~~~-~d-------~e~l~~~i~---~--~~ 195 (359)
...+|+.....|.+...-... .+... ....-..+..++.+.. ...+. .| .+.+++.+. . .+
T Consensus 705 Gr~~ii~~~~~YHG~t~~a~s~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~ 784 (1013)
T PRK06148 705 GQRDAIVLDHAYHGTTTELIDLSPYKFNRKGGKGRPDHVEVAEVPDSYRGPERWPDAEHGRRFAESVAEQIAAMAAKGRG 784 (1013)
T ss_pred CCCeEEEEcCCccCCCcchhhcCchhhcccCCCCCCCCceEcCCCCccccCCCCChhhhHHHHHHHHHHHHHhhhccCCc
Confidence 446788777655554211000 00000 0000000111111100 00011 11 134555443 1 24
Q ss_pred CcEEEEc--CCCCCChhh----HHHHHHHHHHcCCEEEEecccc-cccccc---CCCCCCCCCceEEEeCCCCcCCCCCc
Q 018231 196 PKLIVAG--ASAYARLYD----YERIRKVCNKQKAIMLADMAHI-SGLVAA---GVIPSPFEYADVVTTTTHKSLRGPRG 265 (359)
Q Consensus 196 ~k~v~l~--~~n~g~~~~----l~~i~~la~~~~~~vivD~a~~-~g~~~~---~~~~~~~~~~D~v~~s~~K~l~gp~g 265 (359)
+.+|++. ..+-|.+.+ ++++.++|++||+++|.|++|. +|.... .....+. ..|+++++ |.+++...
T Consensus 785 iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~~~~a~e~~gv-~PDivt~g--K~lggG~P 861 (1013)
T PRK06148 785 PAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFETQGV-VPDIVTMG--KPIGNGHP 861 (1013)
T ss_pred eEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCCcchhhhhcCC-Ccceeeec--ccccCCcc
Confidence 6677765 333444333 8999999999999999999984 443321 1111111 26999986 99965433
Q ss_pred -eEEEEeCCcchhccCCcchhhhHHHhhcccc-CCCCCCCCcHHHHHHHHHHHHHHhccccchhHhhhccccchhhhhcc
Q 018231 266 -AMIFFRKGVKEINKQGKEVFYDYEEKINQAV-FPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQ 343 (359)
Q Consensus 266 -G~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~~l~~~~~~~~~~ 343 (359)
|++++++ ++.+.+.... ..+.++ .|..+.+|..++|+.+.++...++.++..-+....+..-.
T Consensus 862 lgav~~~~--------------ei~~~~~~g~~~~~Tf~-gnpla~aaa~a~L~~i~~e~l~~~~~~~G~~l~~~L~~l~ 926 (1013)
T PRK06148 862 MGAVVTTR--------------EIADSFDNGMEYFNTFG-GNPVSCAIGLAVLDIIEDEDLQRNALEIGNYLLAGLRELQ 926 (1013)
T ss_pred eEEEEEcH--------------HHHhhccCCCccccCCC-CCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 8888877 4444433211 112222 3556667777889999887666777776555554443334
Q ss_pred cCCCccccCCCCCC
Q 018231 344 NNSENIEEDKGRPC 357 (359)
Q Consensus 344 ~~~~~~~~~~~~~~ 357 (359)
.....+++++|+-.
T Consensus 927 ~~~~~i~~VrG~Gl 940 (1013)
T PRK06148 927 DRFDIIGDVRGMGL 940 (1013)
T ss_pred HhCCCceEEeeece
Confidence 45567888888643
No 365
>KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=5.8e-08 Score=89.25 Aligned_cols=186 Identities=19% Similarity=0.190 Sum_probs=122.7
Q ss_pred cHHHHHHHHhhhhccCCCCCCCC-cccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChHHHHHHHHhhcCCCC
Q 018231 59 SVSVMQAVGSVMTNKYSEGYPGA-RYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHD 137 (359)
Q Consensus 59 ~~~v~~al~~~~~~~~~~g~~~~-~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~al~~~Gd 137 (359)
.+++.+.....+.. |.-|..+. -+|+.-+-.-.+| +.+++++|++. .|+...|-+++..++.++.+.||
T Consensus 110 ~~~ike~a~~~lrk-yGvGsCGPrGFYGt~DvHldlE----~~iakF~G~E~-----aivYs~gF~ti~S~ipafsKrGD 179 (467)
T KOG1358|consen 110 NEEIKEEASFTLRK-YGVGSCGPRGFYGTIDVHLDLE----KRIAKFMGTED-----AIVYSYGFSTIESAIPAFSKRGD 179 (467)
T ss_pred cHHHHHHHHHHHHH-hCCCCcCCCcccccceeecccH----HHHHHhhCCcc-----eeeeccccchhhhcchhhhccCc
Confidence 57777777777765 64454433 3455444333444 88999999975 48999998866669999999999
Q ss_pred eeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCC------------cE-EEEc--
Q 018231 138 RIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRP------------KL-IVAG-- 202 (359)
Q Consensus 138 ~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~------------k~-v~l~-- 202 (359)
.|.+.. ........+..+..... ..+..+ |.++++..+.+ .+ +- |++.
T Consensus 180 Ii~~de--------~~nfaIq~GlqlSRS~i--~~Fkhn------dm~~lerll~E-~~~~~~K~~k~~~~Rrfiv~EGl 242 (467)
T KOG1358|consen 180 IIFVDE--------AVNFAIQKGLQLSRSTI--SYFKHN------DMEDLERLLPE-QEDEDQKNPKKALTRRFIVVEGL 242 (467)
T ss_pred EEEEeh--------hhhHHHHHHHhhhhhee--EEecCC------CHHHHHHhccC-cchhhhhccccccceEEEEEEee
Confidence 999876 22222222333343323 222233 67777665543 22 32 3333
Q ss_pred CCCCCChhhHHHHHHHHHHcCCEEEEecccccccccc---CC---CCCCCCCceEEEeCCCCcCCCCCceEEEEeC
Q 018231 203 ASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAA---GV---IPSPFEYADVVTTTTHKSLRGPRGAMIFFRK 272 (359)
Q Consensus 203 ~~n~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~---~~---~~~~~~~~D~v~~s~~K~l~gp~gG~l~~~~ 272 (359)
..|+|.+.|+.+|.++..++...+|+|+..++|.... ++ ...+.+.+|++++|..-++++ .||+...+.
T Consensus 243 ~~N~g~i~pl~~iv~lk~Kyk~RvildEs~SfG~lg~~GrGvteH~~v~~~~iDiv~~sm~~alas-~GgFc~G~~ 317 (467)
T KOG1358|consen 243 YANTGDICPLPEIVKLKNKYKFRVILDESLSFGVLGKTGRGVTEHFGVPITDIDIVTASMETALAS-GGGFCAGKS 317 (467)
T ss_pred ccCCCcccccHHHHHHHhhheEEEEEecccccccccccCccccccCCCCccceeeeeecccccccc-cCceeecce
Confidence 8889999999999999999999999999999887753 11 111223589999998776643 456666543
No 366
>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]
Probab=98.82 E-value=5.1e-08 Score=90.87 Aligned_cols=157 Identities=16% Similarity=0.197 Sum_probs=106.2
Q ss_pred HHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHhh-cC--CCCeeeecCCCCCcccCccccccccceeeeeeeeEEEe
Q 018231 97 CQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTAL-LK--PHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMP 172 (359)
Q Consensus 97 ~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~al-~~--~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~ 172 (359)
.+..++++.|.+-. +-..--++| +-++++++. .. +..+++++...|+.+..... ..++-.|.+++..
T Consensus 125 fQtlv~dLTGm~VA----NASm~DeaTAaAEAm~ma~r~~k~k~~~~~V~~~vhpqt~~Vl~----Tra~~~g~~i~~~- 195 (450)
T COG0403 125 FQTLVADLTGLDVA----NASMLDEATAAAEAMLMAKRVTKKKRNKFLVPKDVHPQTLDVLR----TRAEGLGIEIEVV- 195 (450)
T ss_pred HHHHHHHHhCCCcc----cchhhhhHHHHHHHHHHHHHhhcCcCceEEecCCCCHHHHHHHH----hhcccCceEEEEe-
Confidence 67899999999864 355556666 445444544 33 36899999988877654322 1122234434333
Q ss_pred cccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCC-CC-ChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCC-Cc
Q 018231 173 YRLNESTGYIDYDQLEKSATLFRPKLIVAGASA-YA-RLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE-YA 249 (359)
Q Consensus 173 ~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~~~n-~g-~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~-~~ 249 (359)
+.+ |++++++. ++..+..+++..+| +| ...++++|.+.+|++|+++++= +..+...+...|.+ |+
T Consensus 196 -~~~------d~~~l~~~-~~~~~~gv~vQyP~~~G~~~~d~~~l~~~~h~~~al~~v~----aDplaL~LL~pPGe~GA 263 (450)
T COG0403 196 -DAD------DLDDLESA-DDGDVFGVLVQYPNTFGIVEEDLRALIEAAHSAGALVIVA----ADPLALGLLKPPGEFGA 263 (450)
T ss_pred -ccc------hhhhhhhc-cccCeEEEEEecCCCCCccchhHHHHHHHHhhcCCEEEEE----echhHhhccCCccccCC
Confidence 232 78888888 54467888888666 88 6677999999999999987763 22333333344444 79
Q ss_pred eEEEeCCCC-----cCCCCCceEEEEeCCc
Q 018231 250 DVVTTTTHK-----SLRGPRGAMIFFRKGV 274 (359)
Q Consensus 250 D~v~~s~~K-----~l~gp~gG~l~~~~~~ 274 (359)
|+++++++- +|+||..|++.+++++
T Consensus 264 DIvvG~~QrfGvPmgfGGPhag~fA~~~~~ 293 (450)
T COG0403 264 DIVVGSAQRFGVPMGFGGPHAGYFAVKDEF 293 (450)
T ss_pred ceEEecCcccCCCcCCCCcceeeeeEhHhH
Confidence 999999987 4567777999999975
No 367
>KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism]
Probab=98.79 E-value=7.6e-08 Score=90.46 Aligned_cols=170 Identities=14% Similarity=0.145 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHhh---cC--CC---CeeeecCCCCCcccCccccccccc
Q 018231 90 IDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTAL---LK--PH---DRIMALDLPHGGHLSHGYQTDTKK 160 (359)
Q Consensus 90 ~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~al---~~--~G---d~Vl~~~~~~~~~~~~~~~~~~~~ 160 (359)
...++.++-..++.+|+.+++. .=..|+|++ +.+++.... .+ .| ..++++...| ..+...
T Consensus 118 ~~~~e~~~Vnm~~~L~~~~~~~---~g~~t~G~Ses~l~~~k~~~~~r~~~k~I~~p~iv~~~~v~--------~a~eK~ 186 (491)
T KOG1383|consen 118 VRKLEAECVNMIANLFNAPSDS---CGCGTVGGSESGLAAKKSYRNRRKAQKGIDKPNIVTPQNVH--------AAFEKA 186 (491)
T ss_pred hHHHHHHHHHHHHHHhcCCccc---cCccccccchHHHHHHHHHHHHHHhccCCCCccccchHHHH--------HHHHHH
Confidence 5677778889999999997654 244566766 644444433 11 12 1233332111 122223
Q ss_pred eeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhhHHHHHHHHHH-cCCEEEEecccccccc
Q 018231 161 ISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNK-QKAIMLADMAHISGLV 237 (359)
Q Consensus 161 ~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~l~~i~~la~~-~~~~vivD~a~~~g~~ 237 (359)
+...+.+++.++ +++.++.+|+.++.+.+++ +|.+++.. ++- +|...++++|.++..+ +++++++|++-+.-..
T Consensus 187 a~yf~v~l~~V~--~~~~~~~~D~~k~~~~i~e-Nti~lv~~~~~~p~G~~e~ve~l~~l~~e~w~ipiHvDa~~GgFi~ 263 (491)
T KOG1383|consen 187 ARYFEVELREVP--LDEGDYRVDPGKVVRMIDE-NTIMLVGSLPNFPTGEIEDVEKLADLLLEIWDIPIHVDACLGGFIN 263 (491)
T ss_pred HhhEEEEEEeee--ccccceEecHHHHHHHhcc-ceEEEEEEcCCCCccchhhHHHHHHHHHHHhCCceeecccCccccc
Confidence 445566677776 4546789999999999998 89888877 444 7899999999999988 9999999998533233
Q ss_pred c-cCC--CCCCCC--CceEEEeCCCCcCCCCCc-eEEEEeCC
Q 018231 238 A-AGV--IPSPFE--YADVVTTTTHKSLRGPRG-AMIFFRKG 273 (359)
Q Consensus 238 ~-~~~--~~~~~~--~~D~v~~s~~K~l~gp~g-G~l~~~~~ 273 (359)
| ... .+++|. ++-.+..++||.-..|.| |.++.+++
T Consensus 264 p~~~~~~~~fdFr~p~V~Sisa~~HKYGl~~~G~~~vl~r~k 305 (491)
T KOG1383|consen 264 PAGYLNEEEFDFRVPGVTSISADGHKYGLAPAGSSWVLYRNK 305 (491)
T ss_pred cccccCccccccCCCCceeEeeccceeeeeecCcEEEEEccc
Confidence 3 222 233333 577899999998778888 77777664
No 368
>PRK06918 4-aminobutyrate aminotransferase; Reviewed
Probab=98.79 E-value=1.2e-06 Score=86.04 Aligned_cols=244 Identities=11% Similarity=0.017 Sum_probs=120.9
Q ss_pred CcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHhh--cC
Q 018231 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTAL--LK 134 (359)
Q Consensus 58 ~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~al--~~ 134 (359)
-.|.|.+++.+.+.... +.....+. .+. +..+.+++.+++.....+ .|.++++++ |+..++... ..
T Consensus 71 ~~p~v~~ai~~q~~~~~---~~~~~~~~-~~~----~~~la~~L~~~~p~~~~~---~v~f~~sGseA~e~AlklAr~~t 139 (451)
T PRK06918 71 SHPKVKEALHKQVDQYI---HTGFNVMM-YEP----YIELAEKLAALAPGSFDK---KVLFLNSGAEAVENAVKIARKYT 139 (451)
T ss_pred CCHHHHHHHHHHHHhcc---Cccccccc-cHH----HHHHHHHHHHhCCCCCCC---EEEEcCCcHHHHHHHHHHHHHHh
Confidence 46899999988877521 11100011 111 222557777776532211 377766555 888766543 23
Q ss_pred CCCeeeecCCCCCcccCccccc------ccc--ceeeeeeeeEEEecccCC--CCCCCC-------HHHHHHHhh----h
Q 018231 135 PHDRIMALDLPHGGHLSHGYQT------DTK--KISAVSIFFETMPYRLNE--STGYID-------YDQLEKSAT----L 193 (359)
Q Consensus 135 ~Gd~Vl~~~~~~~~~~~~~~~~------~~~--~~~~~g~~~~~v~~~~~~--~~~~~d-------~e~l~~~i~----~ 193 (359)
...+|+.....|.+...-.... ++. .....+ +..+|++... ..+..+ ++.+++.+. .
T Consensus 140 gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (451)
T PRK06918 140 KRQGIISFSRGFHGRTLMTMTMTSKVKPYKFGFGPFAPE--VYKAPFPYEYRRPEGLTEEQYDDFMIEEFKNFFISEVAP 217 (451)
T ss_pred CCCcEEEECCCcCccchhhhhhcCCCccccccCCCCCCC--cEEcCCCccccccccCchHHHHHHHHHHHHHHHHhhcCC
Confidence 4456877775555542111100 000 000011 1223322100 001000 123343331 2
Q ss_pred hCCcEEEEcCCC-C-CC----hhhHHHHHHHHHHcCCEEEEecccc-cccccc--CCCCCCCCCceEEEeCCCCcCCC-C
Q 018231 194 FRPKLIVAGASA-Y-AR----LYDYERIRKVCNKQKAIMLADMAHI-SGLVAA--GVIPSPFEYADVVTTTTHKSLRG-P 263 (359)
Q Consensus 194 ~~~k~v~l~~~n-~-g~----~~~l~~i~~la~~~~~~vivD~a~~-~g~~~~--~~~~~~~~~~D~v~~s~~K~l~g-p 263 (359)
.++.+|++.|.. . |. ..-+++|.++|++||+++|.|+++. +|.... .....+. ..|++++ +|.+++ .
T Consensus 218 ~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr~g~~~a~~~~~v-~pDi~t~--sK~l~~G~ 294 (451)
T PRK06918 218 ETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGKYFAIEHFDV-VPDLITV--SKSLGAGV 294 (451)
T ss_pred CceEEEEECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCccCceehhHhcCC-CCCEEee--ehhhcCCC
Confidence 256677766443 3 42 2238899999999999999999975 222110 0011100 2577755 598853 2
Q ss_pred CceEEEEeCCcchhccCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhccccchhHhhhc
Q 018231 264 RGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFS 332 (359)
Q Consensus 264 ~gG~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~~ 332 (359)
+-|++++++ ++.+.+........+ ..+....++..++++.+.++...++.+...
T Consensus 295 pig~v~~~~--------------~i~~~~~~~~~~~T~-~g~~l~~aaa~a~l~~i~~~~~~~~~~~~g 348 (451)
T PRK06918 295 PISGVIGRK--------------EIMDESAPGELGGTY-AGSPLGCAAALAVLDIIEKENLNDRAIELG 348 (451)
T ss_pred ccEEEEEcH--------------HHHhccCCCCcCcCC-CcCHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 238888877 444444322211222 345566677777888886654445554444
No 369
>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=98.78 E-value=1.1e-06 Score=86.15 Aligned_cols=279 Identities=12% Similarity=0.083 Sum_probs=141.1
Q ss_pred cCceeeCCCC-----CCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCC-CCCCceeEEE-C
Q 018231 47 KGLELIPSEN-----FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLD-PEKWGVNVQS-L 119 (359)
Q Consensus 47 ~~i~l~~~~~-----~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~-~~~~~~~v~~-t 119 (359)
..|++..+-. --.|+|.+++.+.+..... .... .+. .+.+..+.+++.+.+... ... ..+++ .
T Consensus 59 ~ylD~~~g~~~~~lGH~~p~v~~Ai~~q~~~~~~--~~~~-~~~-----~~~~~~lAe~L~~~~p~~~~~~--~~~f~~~ 128 (459)
T PRK06931 59 QYLDCLAGAGTLALGHNHPDVLQSIQDVLTSGLP--LHTL-DLT-----TPLKDAFSEYLLSLLPGQGKEY--CLQFTGP 128 (459)
T ss_pred EEEEcccchhhccCCCCCHHHHHHHHHHHhhhcc--cccc-ccC-----CHHHHHHHHHHHHhCCCccccc--eEEEeCC
Confidence 3456654432 2468999999887764210 0000 011 122222557777776432 111 12455 4
Q ss_pred CChHHHHHHHHhh--cCCCCeeeecCCCCCcccCcccc-----ccccce--eeeeeeeEEEecccCCCCC------CCCH
Q 018231 120 SGSPSNFQVYTAL--LKPHDRIMALDLPHGGHLSHGYQ-----TDTKKI--SAVSIFFETMPYRLNESTG------YIDY 184 (359)
Q Consensus 120 sG~~a~~~~~~al--~~~Gd~Vl~~~~~~~~~~~~~~~-----~~~~~~--~~~g~~~~~v~~~~~~~~~------~~d~ 184 (359)
||+.|+..++... ....++|+.....|.+...-... .++... ...+ +..++++.. ... .-+.
T Consensus 129 SGsEAve~AlklAr~~tgr~~Ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~ 205 (459)
T PRK06931 129 SGADAVEAAIKLAKTYTGRSNVISFSGGYHGMTHGALAVTGNLSPKNAVNGLMPG--VQFMPYPHE-YRCPLGIGGEAGV 205 (459)
T ss_pred CcHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCcccccCCCCCCCC--cEEeCCCcc-ccccccCCchhHH
Confidence 6777888666543 34456788777666555311110 000000 0111 222332210 000 1123
Q ss_pred HHH----HHHhhh-----hCCcEEEEcC--CCCCCh----hhHHHHHHHHHHcCCEEEEecccc-cccccc--CCCCCCC
Q 018231 185 DQL----EKSATL-----FRPKLIVAGA--SAYARL----YDYERIRKVCNKQKAIMLADMAHI-SGLVAA--GVIPSPF 246 (359)
Q Consensus 185 e~l----~~~i~~-----~~~k~v~l~~--~n~g~~----~~l~~i~~la~~~~~~vivD~a~~-~g~~~~--~~~~~~~ 246 (359)
+.+ ++.+.+ .++.+|++.| .+.|.+ .-++++.++|++||+++|.|++++ +|.... .....+.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG~~~a~~~~gv 285 (459)
T PRK06931 206 KALTYYFENFIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTGKMFAFEHAGI 285 (459)
T ss_pred HHHHHHHHHHHHhhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcCCcCchHHHhhhcCC
Confidence 333 333321 1356777753 223422 238899999999999999999985 332211 0111111
Q ss_pred CCceEEEeCCCCcCCCCCc-eEEEEeCCcchhccCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhccccc
Q 018231 247 EYADVVTTTTHKSLRGPRG-AMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITF 325 (359)
Q Consensus 247 ~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~~~~~ 325 (359)
..|+++++ |.++|..- |+++.++ ++ +.+......+.+ +.|..+.++..+.|+.+.++...
T Consensus 286 -~PDivt~g--K~l~gG~Pi~av~~~~--------------~~-~~~~~~~~~~T~-~gnpla~aaala~L~~l~~~~l~ 346 (459)
T PRK06931 286 -EPDIIVMS--KAVGGGLPLAVLGIKK--------------EF-DAWQPGGHTGTF-RGNQLAMATGLTTLKILKEENLA 346 (459)
T ss_pred -CCCEEEec--ccccCCcceeeeeeHH--------------HH-hhccCCCCCCCC-CCCHHHHHHHHHHHHHHHhCCHH
Confidence 26999997 99865332 6666665 32 322211111222 34566777777889988877666
Q ss_pred hhHhhhccccchhhhhcccCCCccccCCCCCC
Q 018231 326 SHIHVFSLHVYPAFVSNQNNSENIEEDKGRPC 357 (359)
Q Consensus 326 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 357 (359)
.+.+...-+.......-+.....+++++|+-.
T Consensus 347 ~~~~~~G~~l~~~L~~l~~~~~~i~~vrG~Gl 378 (459)
T PRK06931 347 QNAAERGEWLKAQLAELQKRYPCIGNVRGRGL 378 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCeEeEecCce
Confidence 66666655444333322334456788888643
No 370
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=98.76 E-value=3.4e-07 Score=84.47 Aligned_cols=209 Identities=15% Similarity=0.125 Sum_probs=121.5
Q ss_pred ChHHHHHHHHHHHHhh-cCceee-------CCCCCCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHH
Q 018231 31 DPEIADIIEHEKARQW-KGLELI-------PSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRAL 102 (359)
Q Consensus 31 ~~~~~~~~~~~~~~~~-~~i~l~-------~~~~~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a 102 (359)
+.-+..+.....+..+ +.|||. .+..+.-+.|.+|-.....+..+ ..|-+-++...+.+.++ +
T Consensus 10 ~DpIlgL~e~f~~D~R~~KVNLgIGvY~de~Gk~pvl~aV~~Ae~~l~~~~~~------k~Yl~i~G~~~f~~~~~---~ 80 (396)
T COG1448 10 ADPILGLKEAFKADPRPNKVNLGIGVYKDEDGKTPVLRAVKKAEKRLLEQEKT------KNYLPIEGLPEFLEAVQ---K 80 (396)
T ss_pred CCchhHHHHHHhcCCCcCeeeeeeeeeeCCCCCcchhHHHHHHHHHhhccccc------cccCCcCCcHHHHHHHH---H
Confidence 3345566665544433 668886 23445557777766555544322 22333355555554332 3
Q ss_pred HHcCCCC-----CCCceeEEECCChH-HHHHHHHhh--cCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecc
Q 018231 103 EAFRLDP-----EKWGVNVQSLSGSP-SNFQVYTAL--LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYR 174 (359)
Q Consensus 103 ~~~g~~~-----~~~~~~v~~tsG~~-a~~~~~~al--~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 174 (359)
-+||.++ .. +.-+-|.|+| |+.....-+ ..|...|-+++++.+.|.. ...-.|.++...||
T Consensus 81 llFG~d~~~l~~~R--v~t~Qt~GGTGAL~~~A~fl~~~~~~~~vwis~PtW~NH~~--------If~~aGl~v~~Y~Y- 149 (396)
T COG1448 81 LLFGADSPALAEDR--VATVQTLGGTGALRVAADFLARFFPDATVWISDPTWPNHKA--------IFEAAGLEVETYPY- 149 (396)
T ss_pred HhcCCCcHHHHhhh--HhheecCCcchHHHHHHHHHHHhCCCceEEeCCCCcHhHHH--------HHHhcCCceeeeec-
Confidence 3577542 22 1223455666 665333322 5577789999977766643 23345666655654
Q ss_pred cCCCCCCCCHHHHHHHhhhhC-CcEEEE--cCCC-CC---ChhhHHHHHHHHHHcCCEEEEeccccccccc-cCCCCCCC
Q 018231 175 LNESTGYIDYDQLEKSATLFR-PKLIVA--GASA-YA---RLYDYERIRKVCNKQKAIMLADMAHISGLVA-AGVIPSPF 246 (359)
Q Consensus 175 ~~~~~~~~d~e~l~~~i~~~~-~k~v~l--~~~n-~g---~~~~l~~i~~la~~~~~~vivD~a~~~g~~~-~~~~~~~~ 246 (359)
.+.++..+|++.+.+.++.-. -.+|++ |-|| || +...+++|.++.++.+++.+.|-|+ -|.-. ++.+..++
T Consensus 150 yd~~~~~~df~~mla~L~~a~~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AY-QGF~~GleeDa~~l 228 (396)
T COG1448 150 YDAETKGLDFDGMLADLKTAPEGSVVLLHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAY-QGFADGLEEDAYAL 228 (396)
T ss_pred cccccccccHHHHHHHHHhCCCCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhh-hhhccchHHHHHHH
Confidence 455666799999888886522 245555 3677 88 5566889999999999999999884 22111 11111110
Q ss_pred -----CC-ceEEEeCCCCcC
Q 018231 247 -----EY-ADVVTTTTHKSL 260 (359)
Q Consensus 247 -----~~-~D~v~~s~~K~l 260 (359)
.+ -=+++.|++|.|
T Consensus 229 R~~a~~~~~~lva~S~SKnf 248 (396)
T COG1448 229 RLFAEVGPELLVASSFSKNF 248 (396)
T ss_pred HHHHHhCCcEEEEehhhhhh
Confidence 01 148999999987
No 371
>KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism]
Probab=98.75 E-value=1e-06 Score=79.52 Aligned_cols=156 Identities=15% Similarity=0.161 Sum_probs=91.7
Q ss_pred CHHHHHHHhhhhCCcEEEEcCCC--CCChhh----HHHHHHHHHHcCCEEEEeccccccccccCCCCCCCC--CceEEEe
Q 018231 183 DYDQLEKSATLFRPKLIVAGASA--YARLYD----YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE--YADVVTT 254 (359)
Q Consensus 183 d~e~l~~~i~~~~~k~v~l~~~n--~g~~~~----l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~--~~D~v~~ 254 (359)
|.++|+..+++.+.+++++.|-. -|.+.| ++++.++|.+||+++|.|++|..-.....+.....+ -.|+++.
T Consensus 195 d~eale~~l~~~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTGk~la~d~env~PDivil 274 (427)
T KOG1402|consen 195 DAEALEVALKSPNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGKLLACDYENVRPDIVIL 274 (427)
T ss_pred CHHHHHHHhcCCCeeEEEeeccccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccCcEEEeehhhcCCCeEEE
Confidence 78999999987677777775333 454433 889999999999999999999532211111111111 1589988
Q ss_pred CCCCcCCCCCc--eEEEEeCCcchhccCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhccccchhHhhhc
Q 018231 255 TTHKSLRGPRG--AMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFS 332 (359)
Q Consensus 255 s~~K~l~gp~g--G~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~~ 332 (359)
. |.|.|.-- +.+++.+ ++...+++-.....+| -|..+.+...+||+.+.++...++.++..
T Consensus 275 g--KalSGG~~Pvsavl~~~--------------~im~~~~pgeHgsTyg-gNpLg~~vaiAalevi~eekL~era~~lG 337 (427)
T KOG1402|consen 275 G--KALSGGVYPVSAVLADD--------------DIMLNIKPGEHGSTYG-GNPLGCAVAIAALEVIVEEKLVERAAKLG 337 (427)
T ss_pred e--ccccCCeeeeEEEEecH--------------HHHhccCCCccccccC-CChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7 98865322 5555555 3333333322112232 24566677778899999886666665553
Q ss_pred cccchhhhhcccCC-CccccCCCC
Q 018231 333 LHVYPAFVSNQNNS-ENIEEDKGR 355 (359)
Q Consensus 333 l~~~~~~~~~~~~~-~~~~~~~~~ 355 (359)
--...+...-+..+ .++-+++||
T Consensus 338 ~~l~~~L~~l~~~~p~~v~~VRGr 361 (427)
T KOG1402|consen 338 EILRDQLNKLQKKFPHVVKEVRGR 361 (427)
T ss_pred HHHHHHHHhccccccchhheeecc
Confidence 33333332223333 224666665
No 372
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=98.71 E-value=1.2e-07 Score=98.35 Aligned_cols=154 Identities=12% Similarity=0.094 Sum_probs=103.4
Q ss_pred HHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHhh-cC--CCCeeeecCCCCCcccCccccccccceeeeeeeeEEEe
Q 018231 97 CQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTAL-LK--PHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMP 172 (359)
Q Consensus 97 ~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~al-~~--~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~ 172 (359)
.+..++++.|.+.. +..+..+++ +..+++++. .+ ++++|++++..|+.......- .+...|.+++.+
T Consensus 114 ~Qt~i~eLtGm~~a----NaSl~d~atA~aEa~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t----~a~~~g~~v~~~- 184 (939)
T TIGR00461 114 FQTVVSDLTGLPVA----NASLLDEGTAAAEAMALSFNVSKKKANKFFVAKDLHPQTKSVLHT----RAKPFGIEVIVV- 184 (939)
T ss_pred HHHHHHHHHCCChh----hhhccchhhHHHHHHHHHHHhhcCCCCEEEECCCCCcchHHHHHH----HHHhcCcEEEEE-
Confidence 77999999999874 467777777 444455554 33 348999999888765432220 123345444333
Q ss_pred cccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceE
Q 018231 173 YRLNESTGYIDYDQLEKSATLFRPKLIVAGASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADV 251 (359)
Q Consensus 173 ~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~ 251 (359)
|+++|++.+ ++.++++..+| +|.+.++++|.+++|++|+++++++-..+.......-.+ |+|+
T Consensus 185 ----------~~~~l~~~~---~~~~v~~q~Pn~~G~ied~~~i~~~~h~~gal~~~~ad~~al~ll~~Pge~---GaDi 248 (939)
T TIGR00461 185 ----------DCSDIKKAV---DVFGCLLQYPATDGSILDYKQLIDALHSHKSLVSVAADLMALTLLTPPGHY---GADI 248 (939)
T ss_pred ----------cHHHHhhcC---CEEEEEEECCCCCeEEecHHHHHHHHHHcCCEEEEEechHHhCCcCCHHHc---CCcE
Confidence 455666555 46677777555 898889999999999999999997654433332222222 5999
Q ss_pred EEeCCCCc-----CCCCCceEEEEeCCcc
Q 018231 252 VTTTTHKS-----LRGPRGAMIFFRKGVK 275 (359)
Q Consensus 252 v~~s~~K~-----l~gp~gG~l~~~~~~~ 275 (359)
++++++++ ++||..|++.+++++.
T Consensus 249 ~vg~~q~fg~p~g~GGP~aG~~a~~~~l~ 277 (939)
T TIGR00461 249 VLGSSQRFGVPMGYGGPHAAFFAVKDEYN 277 (939)
T ss_pred EeeCCCccCCCCCCCCCceeeeeecHhhH
Confidence 98888774 3467669999999764
No 373
>TIGR03251 LAT_fam L-lysine 6-transaminase. Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.
Probab=98.68 E-value=2.2e-06 Score=83.58 Aligned_cols=156 Identities=12% Similarity=0.095 Sum_probs=85.8
Q ss_pred HHHHHHHhhh--hCCcEEEEc--CCCCCC----hhhHHHHHHHHHHcCCEEEEecccc-ccccccC--CCCCCCCCceEE
Q 018231 184 YDQLEKSATL--FRPKLIVAG--ASAYAR----LYDYERIRKVCNKQKAIMLADMAHI-SGLVAAG--VIPSPFEYADVV 252 (359)
Q Consensus 184 ~e~l~~~i~~--~~~k~v~l~--~~n~g~----~~~l~~i~~la~~~~~~vivD~a~~-~g~~~~~--~~~~~~~~~D~v 252 (359)
++++++.+.. .++.++++. ..+.|. ...+++|.++|++||+++|+|++|+ +|..... ....+. ..|++
T Consensus 205 l~~~~~~~~~~~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~a~~~~gv-~PDi~ 283 (431)
T TIGR03251 205 LRQARAAFAERPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTGTAWAYQQLGV-QPDIV 283 (431)
T ss_pred HHHHHHHHHhCCCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhccCccchHHHHHhcCC-CCCEE
Confidence 4555666642 257777776 333443 3468999999999999999999997 3432110 001111 26999
Q ss_pred EeCCCCcCCCCCceEEEEeCCcchhccCCcchhhhHHH-hhccccCCCCCCCCcHHHHHHHHHHHHHHhccccchhHhhh
Q 018231 253 TTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEE-KINQAVFPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVF 331 (359)
Q Consensus 253 ~~s~~K~l~gp~gG~l~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~ 331 (359)
+++ |.+ |.+|++..++ +. +... .+..........+.|..+.++..++|+.+.++...++.++.
T Consensus 284 ~~g--K~~--~~~g~~~~~~-i~-----------~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~ 347 (431)
T TIGR03251 284 AFG--KKT--QVCGIMAGRR-VD-----------EVADNVFAVPSRLNSTWGGNLVDMVRATRILEIIEEERLVDNARVQ 347 (431)
T ss_pred Eec--ccC--ccceEEecch-HH-----------HhhhhcccCccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 876 765 4456654432 10 1111 11100001111234567778888999998876545566655
Q ss_pred ccccchhhhhcccCCC-ccccCCCCC
Q 018231 332 SLHVYPAFVSNQNNSE-NIEEDKGRP 356 (359)
Q Consensus 332 ~l~~~~~~~~~~~~~~-~~~~~~~~~ 356 (359)
..+............. .+++++|+-
T Consensus 348 g~~l~~~L~~l~~~~~~~i~~vrg~G 373 (431)
T TIGR03251 348 GAHLLARLHELAAEFPHLVSNPRGRG 373 (431)
T ss_pred HHHHHHHHHHHHHhCccceecccccc
Confidence 4444433322123334 567777764
No 374
>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]
Probab=98.68 E-value=1.1e-06 Score=84.13 Aligned_cols=155 Identities=13% Similarity=0.132 Sum_probs=91.0
Q ss_pred HHHHHHHhhhh---CCcEEEEcCCC---CCChh----hHHHHHHHHHHcCCEEEEecccc-cccccc--CCCCCCCCCce
Q 018231 184 YDQLEKSATLF---RPKLIVAGASA---YARLY----DYERIRKVCNKQKAIMLADMAHI-SGLVAA--GVIPSPFEYAD 250 (359)
Q Consensus 184 ~e~l~~~i~~~---~~k~v~l~~~n---~g~~~----~l~~i~~la~~~~~~vivD~a~~-~g~~~~--~~~~~~~~~~D 250 (359)
.++|++.+.++ +..++++.|-- .|.+. -++++.++|++||+++|.|++-. +|.... .....+. ..|
T Consensus 200 a~~le~~i~~~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~tGFGRTG~~FA~e~~gi-~PD 278 (449)
T COG0161 200 ADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRTGKMFACEHAGI-VPD 278 (449)
T ss_pred HHHHHHHHHhcCcccEEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecceeCCCcCchhhhhhhcCC-CCC
Confidence 56778877653 44566664333 33222 28899999999999999999842 232211 1111110 259
Q ss_pred EEEeCCCCcCCCCCc--eEEEEeCCcchhccCCcchhhhHHHhhcc----ccCCCCCCCCcHHHHHHHHHHHHHHhcccc
Q 018231 251 VVTTTTHKSLRGPRG--AMIFFRKGVKEINKQGKEVFYDYEEKINQ----AVFPGLQGGPHNHTITGLAVALKQVCTLIT 324 (359)
Q Consensus 251 ~v~~s~~K~l~gp~g--G~l~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~~~~~gt~~~~~i~al~~Al~~~~~~~~ 324 (359)
++|.+ |.+.|..- |+++++++ ..+.+.. ....+..-+-|..+-++..+.|+.++++..
T Consensus 279 i~~~a--KGLT~GY~Pl~a~l~~~~--------------I~~~~~~~~~~~f~HG~TYsghPlacAaAla~L~i~e~e~l 342 (449)
T COG0161 279 ILCLA--KGLTGGYLPLSAVLTSDR--------------IYEAFSDGDAGAFMHGHTYSGNPLACAAALANLDILEEEDL 342 (449)
T ss_pred eeeec--ccccccchhhHhHhhhHH--------------HHHHHhcccCCeeccCCccccCHHHHHHHHHHHHHHHhcCH
Confidence 99998 98865443 67777773 2332222 122333334455555666677999998866
Q ss_pred chhHhhhccccchhhhhcccCCCccccCCCC
Q 018231 325 FSHIHVFSLHVYPAFVSNQNNSENIEEDKGR 355 (359)
Q Consensus 325 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 355 (359)
.++.++..-+...+.-+-+.+..+.|+++|+
T Consensus 343 ~~~~~~~~~~l~~~L~~~l~~~p~VgdVR~~ 373 (449)
T COG0161 343 LERVAEIGAYLQAGLQAALADHPLVGDVRGL 373 (449)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCcEEEeecc
Confidence 6777765444443332213444678888875
No 375
>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=98.67 E-value=1.4e-06 Score=85.30 Aligned_cols=151 Identities=11% Similarity=0.070 Sum_probs=83.6
Q ss_pred CHHHHHHHhhh--hCCcEEEEcC--CCCCChhh----HHHHHHHHHHcCCEEEEecccc-cccccc--CCCCCCCC-Cce
Q 018231 183 DYDQLEKSATL--FRPKLIVAGA--SAYARLYD----YERIRKVCNKQKAIMLADMAHI-SGLVAA--GVIPSPFE-YAD 250 (359)
Q Consensus 183 d~e~l~~~i~~--~~~k~v~l~~--~n~g~~~~----l~~i~~la~~~~~~vivD~a~~-~g~~~~--~~~~~~~~-~~D 250 (359)
+++.+++.+.+ .++.+|++.| .+.|.+.+ +++|.++|++||+++|+|++|. +|.... .....++. ..|
T Consensus 237 ~l~~l~~~l~~~~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGrtG~~fa~e~~gv~~~PD 316 (464)
T TIGR00699 237 CLEEVEDLIKKWHKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGVGATGKFWAHEHWNLDDPPD 316 (464)
T ss_pred HHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeeeeCCCCCcchhHHHhcCCCCCCC
Confidence 45667777753 2466777763 33455544 8999999999999999999984 222110 00111111 269
Q ss_pred EEEeCCCCcCCCCCceEEEEeCCcchhccCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhccccchhHhh
Q 018231 251 VVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITFSHIHV 330 (359)
Q Consensus 251 ~v~~s~~K~l~gp~gG~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~~~~~~~~~~ 330 (359)
+++++ |.+++ ||+++.++ .+ ..... ...+.....|..+.++..++|+.+.++....+.++
T Consensus 317 i~t~g--K~lg~--gG~~~~~~--------------~~-~~~~~-~~~~~T~~gnp~~~aaa~a~L~~l~~~~l~~~~~~ 376 (464)
T TIGR00699 317 MVTFS--KKFQT--AGYFFHDP--------------AF-RPNKP-YRQFNTWMGDPSRALILREIIQEIKRKDLLENVAH 376 (464)
T ss_pred EEEeh--hhhcc--CCccccch--------------hc-cCCCC-cccccCCCCCHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 98886 98842 24433322 11 00000 01111234456677777788999987766666655
Q ss_pred hccccchhhhhcccCCC-ccccCC
Q 018231 331 FSLHVYPAFVSNQNNSE-NIEEDK 353 (359)
Q Consensus 331 ~~l~~~~~~~~~~~~~~-~~~~~~ 353 (359)
...+............. .+++++
T Consensus 377 ~g~~l~~~L~~l~~~~~~~i~~vR 400 (464)
T TIGR00699 377 VGDYLYTGLEDLQKKYPEFIQNLR 400 (464)
T ss_pred HHHHHHHHHHHHHHhCCCceeeec
Confidence 54333332221122234 566666
No 376
>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1.4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.
Probab=98.66 E-value=2.7e-07 Score=88.14 Aligned_cols=154 Identities=18% Similarity=0.244 Sum_probs=90.3
Q ss_pred HHHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHhh---cCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEE
Q 018231 96 LCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTAL---LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETM 171 (359)
Q Consensus 96 ~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~al---~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v 171 (359)
..+..++++.|.+. ++...-.|++ +-.+++++. -+++++|+++...|+.+..... ..+...|.+++.+
T Consensus 114 e~Qs~i~eLTGmdv----aNaSlyd~atA~aEa~~ma~r~~~~~~~~vlv~~~~hP~~~~v~~----t~a~~~g~~iv~~ 185 (429)
T PF02347_consen 114 EYQSMICELTGMDV----ANASLYDGATAAAEAMLMAVRATKRKRNKVLVPESLHPQTRAVLR----TYAAPLGIEIVEV 185 (429)
T ss_dssp HHHHHHHHHHTSSE----E-SEBSSCCHHHHHHHHHHHHHHTT---EEEEETTS-CHHHHHHH----HHCCHCCEEEEEE
T ss_pred HHHHHHHHhhCCCc----cCCCCCChhHHHHHHHHHHHHhcccCCcEEEEcCCcChhhHHHHH----HhhhhCCeEEEEe
Confidence 37799999999985 2456666777 333333333 3345699999977766543111 1233346556555
Q ss_pred ecccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCC-Cc
Q 018231 172 PYRLNESTGYIDYDQLEKSATLFRPKLIVAGASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE-YA 249 (359)
Q Consensus 172 ~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~-~~ 249 (359)
+ .+ +++..| ++ ++.+|++..+| .|.+.++++|.+++|++|.++++ ++- .........|.. |+
T Consensus 186 ~--~~-~~~~~d--------~~-~~a~v~vq~Pn~~G~~ed~~~i~~~~h~~gal~~~-~ad---~~aL~~l~~Pge~GA 249 (429)
T PF02347_consen 186 P--LD-EDGTTD--------DD-DTAAVMVQNPNTFGVFEDIKEIADIAHAAGALVIV-GAD---PNALGGLKSPGEYGA 249 (429)
T ss_dssp ---BB-TTCSB---------ST-TEEEEEEESS-TTSB--THHHHHHHHHHTT-EEEE-CGG---CCGCCTC--GGGGT-
T ss_pred c--cc-ccCCcc--------cc-CeEEEEeecCCCCceEeeHHHHHHHHHHcCCEEEE-ecC---HHHHhCcCChhhcCc
Confidence 4 44 344445 44 78899998555 89999999999999999999887 543 223333333433 79
Q ss_pred eEEEeCCCCcCC------CCCceEEEEeCCc
Q 018231 250 DVVTTTTHKSLR------GPRGAMIFFRKGV 274 (359)
Q Consensus 250 D~v~~s~~K~l~------gp~gG~l~~~~~~ 274 (359)
|+++.+ ||.|+ ||..|++.+++++
T Consensus 250 DI~vg~-~Q~fg~p~~~GGP~~G~~a~~~~l 279 (429)
T PF02347_consen 250 DIVVGE-HQTFGIPMGFGGPGAGFFAVREDL 279 (429)
T ss_dssp SEEEEC-CTTTT---CCC-S--EEEEE-GGG
T ss_pred cEEeeC-CCCCcccCCCCCCCeeeEEEhhhh
Confidence 999776 77663 4444999999986
No 377
>KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism]
Probab=98.62 E-value=4.6e-07 Score=83.54 Aligned_cols=125 Identities=18% Similarity=0.183 Sum_probs=78.8
Q ss_pred HHHHHHHHHHcCCEEEEeccccc-cccccCCCCCCCC--C--ceEEEeCCCCcCCCCCc-eEEEEeCCcchhccCCcchh
Q 018231 212 YERIRKVCNKQKAIMLADMAHIS-GLVAAGVIPSPFE--Y--ADVVTTTTHKSLRGPRG-AMIFFRKGVKEINKQGKEVF 285 (359)
Q Consensus 212 l~~i~~la~~~~~~vivD~a~~~-g~~~~~~~~~~~~--~--~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~~~~g~~~~ 285 (359)
+++..++|+++|.++|.|++|+. |... .-++|+ + .|+++.+ |++++... |++++.+
T Consensus 235 lka~~~~v~k~Ggl~IaDEVqtGfGRtG---~~wgfe~h~v~PDIvTmA--KgiGnG~Pl~AVvtt~------------- 296 (442)
T KOG1404|consen 235 LKAAYKVVRKRGGLFIADEVQTGFGRTG---HMWGFESHGVVPDIVTMA--KGIGNGFPLGAVVTTP------------- 296 (442)
T ss_pred HHHHHHHHHHcCCEEEehhhhhcccccc---ccccccccCCCccHHHHH--hhccCCCcceeeecCH-------------
Confidence 88999999999999999999963 3221 223333 1 4888877 99864433 8888877
Q ss_pred hhHHHhhccccCC-CCCCCCcHHHHHHHHHHHHHHhccccchhHhhhccccchhhhhcccCCCccccCCCCC
Q 018231 286 YDYEEKINQAVFP-GLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSENIEEDKGRP 356 (359)
Q Consensus 286 ~~~~~~~~~~~~~-~~~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 356 (359)
+..+-+++.... ..+|..++...+++ ++|+.+.++-.-++...-.-+.+..+..-++...+||++|||=
T Consensus 297 -EIa~v~~~~~~~fnTyggnP~a~avg~-aVL~Vikee~LqE~aa~vG~yl~~~l~~l~d~h~iIGdVRG~G 366 (442)
T KOG1404|consen 297 -EIADVLNQKSSHFNTYGGNPVACAVGL-AVLKVIKEENLQENAAEVGSYLLEKLAALKDKHPIIGDVRGRG 366 (442)
T ss_pred -HHHHHHHhccccccccCCCchhHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCceeecccce
Confidence 555555444321 22344445554444 5688888764444444443333333333378889999999983
No 378
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=98.59 E-value=3.4e-06 Score=87.55 Aligned_cols=157 Identities=14% Similarity=0.036 Sum_probs=90.4
Q ss_pred HHHHHHhhh-------hCCcEEEEcCC--CC-CChh----hHHHHHHHHHHcCCEEEEecccc-ccccccCCCCCCCC-C
Q 018231 185 DQLEKSATL-------FRPKLIVAGAS--AY-ARLY----DYERIRKVCNKQKAIMLADMAHI-SGLVAAGVIPSPFE-Y 248 (359)
Q Consensus 185 e~l~~~i~~-------~~~k~v~l~~~--n~-g~~~----~l~~i~~la~~~~~~vivD~a~~-~g~~~~~~~~~~~~-~ 248 (359)
+.+++.+.+ .++.+|++.|- .. |.+. -++.+.++|++||+++|.|++++ +|..........+. .
T Consensus 567 ~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG~~fa~e~~gv~ 646 (817)
T PLN02974 567 SYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGVESAWELLGCK 646 (817)
T ss_pred HHHHHHHHhhccccCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecccCCCcccchhhHHhcCCC
Confidence 456666642 24567777652 33 4322 38899999999999999999985 22221100000011 2
Q ss_pred ceEEEeCCCCcCCCC--CceEEEEeCCcchhccCCcchhhhHHHhhcc-----ccCCCCCCCCcHHHHHHHHHHHHHHhc
Q 018231 249 ADVVTTTTHKSLRGP--RGAMIFFRKGVKEINKQGKEVFYDYEEKINQ-----AVFPGLQGGPHNHTITGLAVALKQVCT 321 (359)
Q Consensus 249 ~D~v~~s~~K~l~gp--~gG~l~~~~~~~~~~~~g~~~~~~~~~~~~~-----~~~~~~~gt~~~~~i~al~~Al~~~~~ 321 (359)
.|+++++ |.+.|. +-|++++++ ++.+.+.. ....+...+-|..+.++..++|+.+++
T Consensus 647 PDIi~~g--KgLtgG~~Plaa~l~~~--------------~I~~~f~~~~~~~~~~hg~Ty~gnpl~cAaala~L~~~~~ 710 (817)
T PLN02974 647 PDIACYA--KLLTGGLVPLAATLATE--------------EVFEAFRGPSKLDALLHGHSYTAHPMGCAAAAKALQWYKD 710 (817)
T ss_pred CCEEeec--ccccCCCCccEEEEEcH--------------HHHHhhccccccCCcccCCCCCcCHHHHHHHHHHHHHHHc
Confidence 6999998 999765 348888887 34443321 111222334566777777788999988
Q ss_pred cccchhHhhhcccc----chhhhhcccCCCccccCCCCCC
Q 018231 322 LITFSHIHVFSLHV----YPAFVSNQNNSENIEEDKGRPC 357 (359)
Q Consensus 322 ~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~ 357 (359)
+....++.....+. ..++...+.+...+++++|+-+
T Consensus 711 ~~~~~~l~~~~~~l~~~l~~~l~~~l~~~p~V~~VRg~Gl 750 (817)
T PLN02974 711 PSTNPNLIPPGSRLRELWDEELVRAISSLPNVERVVSLGT 750 (817)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCeeEEEeeee
Confidence 64444433322111 1122122344577888888754
No 379
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=98.55 E-value=2.6e-06 Score=77.84 Aligned_cols=213 Identities=16% Similarity=0.199 Sum_probs=123.4
Q ss_pred HHHHHHHHcCCCCCCCceeEEECC-ChHHHHHHHHhhcCCCCeee-----ecCCCCCcccCccccccccceeeeeeeeEE
Q 018231 97 CQKRALEAFRLDPEKWGVNVQSLS-GSPSNFQVYTALLKPHDRIM-----ALDLPHGGHLSHGYQTDTKKISAVSIFFET 170 (359)
Q Consensus 97 ~~~~~a~~~g~~~~~~~~~v~~ts-G~~a~~~~~~al~~~Gd~Vl-----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 170 (359)
+++.+++.||.+. ++.|. |-.|-..++..++++|+.+. +++ +.|+... +..+...|+.++.
T Consensus 84 L~~avkdifGfq~------~iPthQGRgAE~Il~~i~ik~~~~~pg~~~~~~s---N~~FdTT----r~h~~~ng~~~~n 150 (471)
T COG3033 84 LADAVKDIFGFQY------TIPTHQGRGAENILIPILIKKGEQEPGSKMVAFS---NYHFDTT----RGHIQINGATPRN 150 (471)
T ss_pred HHHHHHHhcCcee------eeeccCCccHHHHHHHHHhhhccccCCccccccc---cceecch----hHHHHhcCCcccc
Confidence 3367778889764 55543 43344434555566655443 332 1111111 1123334444433
Q ss_pred Eeccc--CCC-----CCCCCHHHHHHHhhhh---CCcEEEEc-CCC--CC---ChhhHHHHHHHHHHcCCEEEEeccccc
Q 018231 171 MPYRL--NES-----TGYIDYDQLEKSATLF---RPKLIVAG-ASA--YA---RLYDYERIRKVCNKQKAIMLADMAHIS 234 (359)
Q Consensus 171 v~~~~--~~~-----~~~~d~e~l~~~i~~~---~~k~v~l~-~~n--~g---~~~~l~~i~~la~~~~~~vivD~a~~~ 234 (359)
++.+. +.+ .+.+|++.|++.|++. +.-.|+++ .+| -| ....++++.+||++|++.++.|++..+
T Consensus 151 ~~~~ea~d~~~~~pFKGd~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~Rfa 230 (471)
T COG3033 151 VYVDEAFDTEVKYPFKGNFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAARFA 230 (471)
T ss_pred ccccccccccccCCCCCccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEeehhhhh
Confidence 33221 111 2578999999999863 34566665 555 24 456788999999999999999998765
Q ss_pred ccccc-CC-----CCCC--------CCCceEEEeCCCCcCCCCCceEEEEeCCcchhccCCcchhhhHHHhhcc--ccCC
Q 018231 235 GLVAA-GV-----IPSP--------FEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQ--AVFP 298 (359)
Q Consensus 235 g~~~~-~~-----~~~~--------~~~~D~v~~s~~K~l~gp~gG~l~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~ 298 (359)
--..+ .. ..+. +.++|-++.|+-|--..+.||+++.+++. .+++...... ....
T Consensus 231 ENaYFIk~rE~gYrd~sI~~IarEm~sYaD~~~mS~KKD~lvnmGGfl~~~D~~----------~fDvy~~~~~~~V~~e 300 (471)
T COG3033 231 ENAYFIKQREPGYRDWSIEEIAREMYSYADGCTMSAKKDGLVNMGGFLCFKDDS----------FFDVYEECRTLVVVQE 300 (471)
T ss_pred hhhhhhhhcCcccccccHHHHHHHHHhhhhhheeeccccceeccccEEEecCcc----------HHHHHHHHHhheEeec
Confidence 43332 11 1111 23689999999997778889999999961 1122221111 1111
Q ss_pred CC--CCCCcHHHHHHHHHHHHHHhccccchhHhhhcc
Q 018231 299 GL--QGGPHNHTITGLAVALKQVCTLITFSHIHVFSL 333 (359)
Q Consensus 299 ~~--~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~~l 333 (359)
|. +|...--.+.|+++.|.+-.+ ..+-+.|+--.
T Consensus 301 G~~tYGgl~GrdmealAvGL~e~~~-~~yl~~Rv~Qv 336 (471)
T COG3033 301 GFPTYGGLAGRDMEALAVGLREGVN-FDYLAHRVAQV 336 (471)
T ss_pred cccccCcccchhHHHHHHHHHHhcC-cHHHHHHHHHH
Confidence 21 366666778889888877665 34555555433
No 380
>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.
Probab=98.53 E-value=1.5e-07 Score=87.92 Aligned_cols=168 Identities=17% Similarity=0.082 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCceeEEECCChH--HHHHHHHhhc--CCCCeeeecCCCCCcccCccccccccceeeeee
Q 018231 91 DMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP--SNFQVYTALL--KPHDRIMALDLPHGGHLSHGYQTDTKKISAVSI 166 (359)
Q Consensus 91 ~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~--a~~~~~~al~--~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~ 166 (359)
..+-..+...+-+..|+..-. ..++++.+| .+.+.+.++- ..++.|+.+..+|.+.+- .+..+|.
T Consensus 55 ~~ltn~l~~d~~~~~G~~~~~---~~~~vP~atgm~l~l~l~~l~~r~~a~~Viw~ridqkSc~k--------ai~~AGl 123 (389)
T PF05889_consen 55 AKLTNSLVLDALRLAGLRSVK---SCFVVPMATGMSLTLCLLALRMRPKAKYVIWPRIDQKSCFK--------AIERAGL 123 (389)
T ss_dssp HHHHHHHHHHHHHHTTHTTHC---EEEEESS-HHHHHHHHHHHHHHHCT--EEEEEEEETHHHHH--------HHHHTT-
T ss_pred HHHHHHHHHHHHHHcCCcccc---ceEEEecccccHHHHHHHHHhcccCCceEEEeeccccchHH--------HHHhcCC
Confidence 333333334445567886422 366777777 3443555553 577899988877764322 4556687
Q ss_pred eeEEEecccCCCCCCCCHHHHHHHhhhhC--CcEEEEc-CCC-CCChhh-HHHHHHHHHHcCCEEEEeccccccccc---
Q 018231 167 FFETMPYRLNESTGYIDYDQLEKSATLFR--PKLIVAG-ASA-YARLYD-YERIRKVCNKQKAIMLADMAHISGLVA--- 238 (359)
Q Consensus 167 ~~~~v~~~~~~~~~~~d~e~l~~~i~~~~--~k~v~l~-~~n-~g~~~~-l~~i~~la~~~~~~vivD~a~~~g~~~--- 238 (359)
+++.|+....++....|++.+++.+++.. ..+.+++ .+. .|+..| +++|+++|+++|++.++..|+++-.-.
T Consensus 124 ~~~vV~~~~~~d~l~td~~~ie~~i~~~G~~~iLcvltttscfapr~~D~i~~IakiC~~~~IPhlvNnAYgvQ~~~~~~ 203 (389)
T PF05889_consen 124 EPVVVENVLEGDELITDLEAIEAKIEELGADNILCVLTTTSCFAPRLPDDIEEIAKICKEYDIPHLVNNAYGVQSSKCMH 203 (389)
T ss_dssp EEEEE-EEEETTEEEEHHHHHHHHHHHHCGGGEEEEEEESSTTTTB----HHHHHHHHHHHT--EEEEGTTTTT-HHHHH
T ss_pred eEEEeeccCCCCeeeccHHHHHHHHHHhCCCCeEEEEEecCccCCCCCccHHHHHHHHHHcCCceEEccchhhhHHHHHH
Confidence 77777754443334678899999887533 2344555 333 677766 999999999999999999997651100
Q ss_pred ---cCCCCCCCCCceEEEeCCCCcCCCCCceEEEEeC
Q 018231 239 ---AGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRK 272 (359)
Q Consensus 239 ---~~~~~~~~~~~D~v~~s~~K~l~gp~gG~l~~~~ 272 (359)
......- .|+++.|+.|.|..|-||.++...
T Consensus 204 ~i~~a~~~GR---vda~vqS~dkNF~VPvGgai~As~ 237 (389)
T PF05889_consen 204 LIQQAWRVGR---VDAFVQSTDKNFMVPVGGAIMASF 237 (389)
T ss_dssp HHHHHHHHST---CSEEEEEHHHHHCEESSHEEEEES
T ss_pred HHHHHHhcCC---cceeeeecCCCEEecCCCcEEEec
Confidence 0000011 688999999999999995555444
No 381
>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=98.45 E-value=2.2e-05 Score=73.16 Aligned_cols=244 Identities=14% Similarity=0.109 Sum_probs=131.3
Q ss_pred CCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHhhc--
Q 018231 57 FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALL-- 133 (359)
Q Consensus 57 ~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~al~-- 133 (359)
...|++.+++.+-+.. . +... .+.-..+.++ +.+.+.+..+-... ..|.|.++++ |++.++..-.
T Consensus 72 hanpev~ral~~q~~k-~--~hs~----~~~~t~eav~--l~~~l~~~~~~~~~---~rvff~nsGTeAne~ALK~Ark~ 139 (433)
T KOG1401|consen 72 HANPEVARALAEQAKK-L--GHSS----NGYFTLEAVE--LEEVLSAVLGKGSA---ERVFFCNSGTEANETALKFARKF 139 (433)
T ss_pred CCCHHHHHHHHHHHhh-h--eecc----CccccHHHHH--HHHHHHhcccCCCc---cEEEEecCCcHHHHHHHHHHHHh
Confidence 3578999998886654 2 1000 0101123333 44666666543222 2588876666 8887665321
Q ss_pred ----CCCC--eeeecCCCCCcccC-c----cccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhC--CcEEE
Q 018231 134 ----KPHD--RIMALDLPHGGHLS-H----GYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFR--PKLIV 200 (359)
Q Consensus 134 ----~~Gd--~Vl~~~~~~~~~~~-~----~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~--~k~v~ 200 (359)
.|-+ +++.....|.+..- . ++..++.. ..-.-..++... .-|..++++.+..++ ..+|+
T Consensus 140 ~~~~~~~~~t~~Iaf~nsyHG~tlgals~~~~s~y~~~--~~p~~p~v~~~~------ynd~t~l~k~~~~h~~~IaAVI 211 (433)
T KOG1401|consen 140 TGKKHPEKKTKFIAFENSYHGRTLGALSVTGNSKYGLP--FDPIAPDVVTAE------YNDSTALEKLFESHKGEIAAVI 211 (433)
T ss_pred hcccCCccceeEEEEecCcCCcchhHHHhhcccccCCC--CCCCCCceeecc------cCCHHHHHHHHHhCCCceEEEE
Confidence 1223 37777666555421 1 11111100 000001112111 237899999998744 46777
Q ss_pred EcCCC-CC-----ChhhHHHHHHHHHHcCCEEEEeccccc-cccccCCCCCCCC-CceEEEeCCCCcCCCCCc-eEEEEe
Q 018231 201 AGASA-YA-----RLYDYERIRKVCNKQKAIMLADMAHIS-GLVAAGVIPSPFE-YADVVTTTTHKSLRGPRG-AMIFFR 271 (359)
Q Consensus 201 l~~~n-~g-----~~~~l~~i~~la~~~~~~vivD~a~~~-g~~~~~~~~~~~~-~~D~v~~s~~K~l~gp~g-G~l~~~ 271 (359)
+.|-- -| ...-+..|..+|+++|+++|.|+++.. |.....-...-+. -.|+.+.. |.|+|.-- |+.+++
T Consensus 212 vEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g~~~a~e~~~~~PDI~t~a--K~L~gGlPigA~~v~ 289 (433)
T KOG1401|consen 212 VEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLGYGWAQEYFGVTPDITTVA--KPLGGGLPIGATGVR 289 (433)
T ss_pred EecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhCccccchHHHHHHhCcCCcceeeh--hhccCCceeEEEeeh
Confidence 75333 33 233477889999999999999999853 3221100000000 24888877 98865433 888888
Q ss_pred CCcchhccCCcchhhhHHHhhccccC--CCCCCCCcHHHHHHHHHHHHHHhccccchhHhhhccccc
Q 018231 272 KGVKEINKQGKEVFYDYEEKINQAVF--PGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVY 336 (359)
Q Consensus 272 ~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~~l~~~ 336 (359)
++ ..+.++.... .+...+-|..+..+...+++.+.+.+..++........+
T Consensus 290 ~k--------------V~~~i~~~~~l~hg~Tf~gnpLacsa~~~~l~~l~~~e~~k~vs~~~k~L~ 342 (433)
T KOG1401|consen 290 DK--------------VAEMISPGDHLYHGGTFSGNPLACSAGIKVLDELKDPETLKNVSKIGKELR 342 (433)
T ss_pred HH--------------HHhhcCCCCccccCcccCCChhhhhHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 84 3444433211 122223355666777788999988766666655544433
No 382
>PRK08297 L-lysine aminotransferase; Provisional
Probab=98.40 E-value=9.2e-06 Score=79.46 Aligned_cols=156 Identities=12% Similarity=0.066 Sum_probs=84.2
Q ss_pred HHHHHHHhhh--hCCcEEEEcC--CCCCC----hhhHHHHHHHHHHcCCEEEEecccc-ccccccC--CCCCCCCCceEE
Q 018231 184 YDQLEKSATL--FRPKLIVAGA--SAYAR----LYDYERIRKVCNKQKAIMLADMAHI-SGLVAAG--VIPSPFEYADVV 252 (359)
Q Consensus 184 ~e~l~~~i~~--~~~k~v~l~~--~n~g~----~~~l~~i~~la~~~~~~vivD~a~~-~g~~~~~--~~~~~~~~~D~v 252 (359)
++++++.+.+ .++.+|++.| .+.|. ...+++|.++|++||+++|.|++|+ +|..... ....+. ..|++
T Consensus 212 ~~~~~~~i~~~~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv-~PDiv 290 (443)
T PRK08297 212 LAQARAAFERHPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLTGTAWAYQQLGV-RPDIV 290 (443)
T ss_pred HHHHHHHHHhCCCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCccchHHHHHhcCC-CCCEE
Confidence 4556666753 2567777763 33343 3458999999999999999999985 3332110 001110 26999
Q ss_pred EeCCCCcCCCCCceEEEEeCCcchhccCCcchhhhHH-HhhccccCCCCCCCCcHHHHHHHHHHHHHHhccccchhHhhh
Q 018231 253 TTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYE-EKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVF 331 (359)
Q Consensus 253 ~~s~~K~l~gp~gG~l~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~ 331 (359)
+++ |.+ |.+|++..++ +. +.. ..+......+...+.|..+.++..++++.+.++...++.++.
T Consensus 291 ~~g--K~l--~~~a~l~~~~-i~-----------~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~ 354 (443)
T PRK08297 291 AFG--KKT--QVCGIMAGRR-VD-----------EVEDNVFAVSSRINSTWGGNLVDMVRARRILEVIEEDGLVENAARQ 354 (443)
T ss_pred Eec--ccc--cccceecchH-HH-----------HhhhhhccCccccCCCCCccHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 876 987 3445554432 10 111 111100011111224566777778889988876556666665
Q ss_pred ccccchhhhhcccCCCccc-cCCCCC
Q 018231 332 SLHVYPAFVSNQNNSENIE-EDKGRP 356 (359)
Q Consensus 332 ~l~~~~~~~~~~~~~~~~~-~~~~~~ 356 (359)
..+..............++ +++|+-
T Consensus 355 g~~l~~~L~~l~~~~~~~~~~vrg~G 380 (443)
T PRK08297 355 GEYLLARLEELAAEFPAVVSNVRGRG 380 (443)
T ss_pred HHHHHHHHHHHHHHCCCcceeeeccc
Confidence 4444333322222334444 666653
No 383
>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]
Probab=98.37 E-value=4.9e-06 Score=81.20 Aligned_cols=167 Identities=19% Similarity=0.192 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCceeEEECCChH---HHHHHHHhhc-CCCC----eeeecCCCCCcccCcccccccccee
Q 018231 91 DMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP---SNFQVYTALL-KPHD----RIMALDLPHGGHLSHGYQTDTKKIS 162 (359)
Q Consensus 91 ~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~---a~~~~~~al~-~~Gd----~Vl~~~~~~~~~~~~~~~~~~~~~~ 162 (359)
.++-..+.+++.+..|.|. ..+...||+. +-+.++++.+ .+|+ ..+++...|+.... .+.
T Consensus 581 ~~lf~~Le~~Lc~iTG~D~----~s~QPNsGA~GEYaGL~~IRaY~~~kge~hRnvClIPvSAHGTNPA--------SA~ 648 (1001)
T KOG2040|consen 581 QQLFTELEKDLCEITGFDS----FSLQPNSGAQGEYAGLRVIRAYLESKGEGHRNVCLIPVSAHGTNPA--------SAA 648 (1001)
T ss_pred HHHHHHHHHHhheeecccc----eeecCCCCcccchhhHHHHHHHHHhccCCcceeEEEeecccCCChh--------hHH
Confidence 3343445688999999876 2455667777 5555788874 4554 24555555665522 345
Q ss_pred eeeeeeEEEecccCCCCCCCCHHHHHHHhhhh--CCcEEEEc-CCCCCC-hhhHHHHHHHHHHcCCEEEEeccccccccc
Q 018231 163 AVSIFFETMPYRLNESTGYIDYDQLEKSATLF--RPKLIVAG-ASAYAR-LYDYERIRKVCNKQKAIMLADMAHISGLVA 238 (359)
Q Consensus 163 ~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~--~~k~v~l~-~~n~g~-~~~l~~i~~la~~~~~~vivD~a~~~g~~~ 238 (359)
+.|.++ +|+..+ .++.+|..+|+++..++ +..+++++ |+..|. ...++++.++.++||--|..|+|..-..+
T Consensus 649 Magmkv--vpV~~~-~~G~id~~dLk~kaekh~~~Laa~MvTYPST~GvfE~~i~d~cd~iHehGGQVYlDGANMNAqV- 724 (1001)
T KOG2040|consen 649 MAGMKV--VPVGCD-ANGNIDMVDLKAKAEKHKDNLAALMVTYPSTHGVFEEGIDDICDIIHEHGGQVYLDGANMNAQV- 724 (1001)
T ss_pred hcCCEE--EEeecc-CCCCccHHHHHHHHHHhhhhhheeEEecccccccccccHHHHHHHHHhcCCEEEecCCCcccee-
Confidence 667666 444566 67899999999888653 45677778 776884 45699999999999999999998531111
Q ss_pred cCCCCCCCCCceEEEeCCCCcCC-----CCCc-eEEEEeCCc
Q 018231 239 AGVIPSPFEYADVVTTTTHKSLR-----GPRG-AMIFFRKGV 274 (359)
Q Consensus 239 ~~~~~~~~~~~D~v~~s~~K~l~-----gp~g-G~l~~~~~~ 274 (359)
++-..+.-|+|+.-...||+|+ |.+| |-|.+++.+
T Consensus 725 -Glc~pGd~GaDV~HLNLHKTFcIPHGGGGPg~gPIgVK~HL 765 (1001)
T KOG2040|consen 725 -GLCRPGDIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHL 765 (1001)
T ss_pred -cccCCccccccceeecccceeeecCCCCCCCCCccchhhhc
Confidence 1212222259999999999984 2233 777787754
No 384
>KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism]
Probab=98.37 E-value=3.2e-06 Score=79.58 Aligned_cols=177 Identities=17% Similarity=0.151 Sum_probs=112.3
Q ss_pred CchhHHHHHHHHHHHHHHHcCCCCCC------CceeEEECCChHHHHH-HHHhh------cCCC-----------Cee-e
Q 018231 86 GNEYIDMAESLCQKRALEAFRLDPEK------WGVNVQSLSGSPSNFQ-VYTAL------LKPH-----------DRI-M 140 (359)
Q Consensus 86 ~~~~~~~l~~~~~~~~a~~~g~~~~~------~~~~v~~tsG~~a~~~-~~~al------~~~G-----------d~V-l 140 (359)
.++...+||..+.+|++++++.+... -|-.|+.++.+.+.+. ++.+- ++.+ +-| .
T Consensus 107 ssPa~TELE~ivmDWL~kml~LP~~Fl~~~~g~GgGviQ~tases~lvallaaR~~~i~~~k~~~p~~~e~~~~~~lV~Y 186 (511)
T KOG0628|consen 107 SSPACTELEVIVMDWLGKMLGLPAEFLSLGLGDGGGVIQGTASESVLVALLAARTEKIEEIKSRPPELHESSVLARLVAY 186 (511)
T ss_pred cCcchHHHHHHHHHHHHHHhcCcHHHhccCCCCCcceEecCcchhHHHHHHHHHHHHHHHhhcCCCcccchhhhhhheEE
Confidence 34567899988999999999874311 1234666666663332 33321 2222 122 2
Q ss_pred ecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCc-----EEEEc--CCCCCChhhHH
Q 018231 141 ALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPK-----LIVAG--ASAYARLYDYE 213 (359)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k-----~v~l~--~~n~g~~~~l~ 213 (359)
..+..|.++- .++.+.+.+.+.++ .+ .++.++.+.|.++|.++..+ .++.+ .+++-...+++
T Consensus 187 ~SDqahssve--------ka~~i~~VklR~l~--td-~n~~mr~~~L~~AIe~D~arGlIPf~v~at~GTT~~ca~D~l~ 255 (511)
T KOG0628|consen 187 CSDQAHSSVE--------KACLIAGVKLRALP--TD-ENFGMRGDTLRKAIEEDIARGLIPFFVCATLGTTSSCAFDELE 255 (511)
T ss_pred ecCcccchHH--------HhHhhcceeEEEee--cc-cCcCCCHHHHHHHHHHHHhCCCccEEEEEeecCccccccccHH
Confidence 3343344332 24456666666664 44 47899999999999874433 23333 22233677899
Q ss_pred HHHHHHHHcCCEEEEeccccccccc---cCCCCCCCCCceEEEeCCCCcCCCCCc-eEEEEeCC
Q 018231 214 RIRKVCNKQKAIMLADMAHISGLVA---AGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKG 273 (359)
Q Consensus 214 ~i~~la~~~~~~vivD~a~~~g~~~---~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~ 273 (359)
+|..+|+++|+|+++|+|++...+- ++-.-.+.+.+|.+.+.+|||+..--. ..+++++.
T Consensus 256 elg~Vc~~~glWLHVDAAYAGsa~iCpE~r~l~rGie~aDSfn~n~hK~~~vnfDCs~lWvkd~ 319 (511)
T KOG0628|consen 256 ELGPVCREEGLWLHVDAAYAGSAFICPEFRYLMRGIEYADSFNFNPHKWLLVNFDCSPLWVKDG 319 (511)
T ss_pred HhcchhhhcCEEEEeehhhccccccCHHHHHHhhcchhhccccCChhheeEEeeeeecceeecC
Confidence 9999999999999999998643322 122223444689999999999865544 77888886
No 385
>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases.; PDB: 3D6K_C 3EZ1_A 3PPL_B.
Probab=98.24 E-value=3.9e-05 Score=71.33 Aligned_cols=207 Identities=19% Similarity=0.154 Sum_probs=102.7
Q ss_pred hcCceeeCCCCCCcHHHHHHHHhhhhc----c-CCCCCCCCccc-CCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEEC
Q 018231 46 WKGLELIPSENFTSVSVMQAVGSVMTN----K-YSEGYPGARYY-GGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSL 119 (359)
Q Consensus 46 ~~~i~l~~~~~~~~~~v~~al~~~~~~----~-~~~g~~~~~~~-~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~t 119 (359)
.++++|+-.-..++++=.+- ...+.. . +.......+-| ++.+++.+. |+.+++++|+++++ |++.
T Consensus 22 a~~L~LdmtRGKPs~eQLdL-S~~lL~~~~~~~~~~dG~D~RNY~G~l~Gipe~----r~l~a~llgv~~~~----viv~ 92 (425)
T PF12897_consen 22 AKGLKLDMTRGKPSPEQLDL-SNPLLDLPGSSDYLADGTDCRNYPGGLDGIPEA----RELFAELLGVPPEN----VIVG 92 (425)
T ss_dssp HTT--EES---S--HHHHHG-GGGGGGSSTTCCBECTTEBTTSS-S-SS--HHH----HHHHHHHHTS-GGG----EEE-
T ss_pred HcCCCcccCCCCCCHHHHhh-hHHHhcCCCCccccCCCccccCCCCccCChHHH----HHHHHHHhCCCHHH----EEEe
Confidence 35777776666666554442 222221 1 11112234667 777888764 48899999999865 8887
Q ss_pred CChHHHH--H-HHHhhc---C-------CCC--eeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCH
Q 018231 120 SGSPSNF--Q-VYTALL---K-------PHD--RIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDY 184 (359)
Q Consensus 120 sG~~a~~--~-~~~al~---~-------~Gd--~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~ 184 (359)
.+++.++ - +..+++ . ..+ +.|++. |+|--....++..|.+...|| .+ ...+|.
T Consensus 93 gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCPv--------PGYDRHFai~E~~Giemi~Vp--M~--~dGPDm 160 (425)
T PF12897_consen 93 GNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCPV--------PGYDRHFAITEHFGIEMIPVP--MT--EDGPDM 160 (425)
T ss_dssp SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEEE--------S--HHHHHHHHHCT-EEEEEE--EE--TTEE-H
T ss_pred ccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEecC--------CCchHHHHHHHhhCcEEEecC--CC--CCCCCH
Confidence 7777333 1 223331 1 122 456666 444333334556687776665 44 235799
Q ss_pred HHHHHHhhh-hCCcEEEEc--CCC-CCChhhHHHHHHHH----HHcCCEEEEeccccccccccCCCCCC---C-------
Q 018231 185 DQLEKSATL-FRPKLIVAG--ASA-YARLYDYERIRKVC----NKQKAIMLADMAHISGLVAAGVIPSP---F------- 246 (359)
Q Consensus 185 e~l~~~i~~-~~~k~v~l~--~~n-~g~~~~l~~i~~la----~~~~~~vivD~a~~~g~~~~~~~~~~---~------- 246 (359)
|.+|+.+.+ ...|.|++. .+| +|....-+.+.++| ...+..+++|.|+++.++..+..... +
T Consensus 161 D~Ve~LV~~D~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~DFRI~WDNAY~vHhL~~~~~~~~~~nil~~~~~A 240 (425)
T PF12897_consen 161 DMVEELVAEDPSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAPDFRIFWDNAYAVHHLYDEEPRDALLNILDACAKA 240 (425)
T ss_dssp HHHHHHTHTSTTEEEEEE-SSS-TTT-----HHHHHHHHHS--SSTT-EEEEE-TTTT-BSSSSSS------HHHHHHHT
T ss_pred HHHHHHHhcCCccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCcCeEEEeecCceEeeccccccchhhhHHHHHHHHc
Confidence 999999853 356888886 888 88666555555554 35688999999998877743322111 0
Q ss_pred --CCceEEEeCCCCc-CCCCCceEEEEeCC
Q 018231 247 --EYADVVTTTTHKS-LRGPRGAMIFFRKG 273 (359)
Q Consensus 247 --~~~D~v~~s~~K~-l~gp~gG~l~~~~~ 273 (359)
.+.-++..|++|- |.|..-+++..+.+
T Consensus 241 Gnpdrv~~F~STSKITf~GaGva~~aaS~~ 270 (425)
T PF12897_consen 241 GNPDRVYVFASTSKITFPGAGVAFFAASEA 270 (425)
T ss_dssp T-TTSEEEEEESTTTS-TTSS-EEEEE-HH
T ss_pred CCCCeEEEEecccccccCCcceeeeecCHH
Confidence 1234788889994 43332277777764
No 386
>PRK12566 glycine dehydrogenase; Provisional
Probab=98.21 E-value=5.2e-06 Score=86.12 Aligned_cols=151 Identities=19% Similarity=0.160 Sum_probs=93.5
Q ss_pred HHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHhh-cC--CCCeeeecCCCCCcccCccccccccceeeeeeeeEEEe
Q 018231 97 CQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTAL-LK--PHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMP 172 (359)
Q Consensus 97 ~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~al-~~--~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~ 172 (359)
.+..++++.|.+-. +-..-.|++ +-.+++++. .. +..+|++++..|+....... ..+...|.++ +
T Consensus 129 ~Qtmi~~LtGm~va----NASl~D~atA~aEA~~ma~~~~~~k~~~~~v~~~~hP~~~~v~~----t~~~~~g~~i--~- 197 (954)
T PRK12566 129 FQQMTIDLTGLDLA----NASLLDEATAAAEAMALAKRVAKSKSNRFFVDEHCHPQTLSVLR----TRAEGFGFEL--V- 197 (954)
T ss_pred HHHHHHHHhCchhh----hhhhccchhHHHHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHH----HhhhcCCcEE--E-
Confidence 67899999999853 244445666 333333333 22 25678888866654332111 1122233222 2
Q ss_pred cccCCCCCCCCHHHHHHHhhhhCCcEEEEcCCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCC-Cce
Q 018231 173 YRLNESTGYIDYDQLEKSATLFRPKLIVAGASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE-YAD 250 (359)
Q Consensus 173 ~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~-~~D 250 (359)
.+++++.+++ ++..+++..+| +|.+.++++|.+++|++|++++ +++ ..+...+.+.|.+ |+|
T Consensus 198 -----------~~~~~~~~~~-~~~~v~vq~P~~~G~i~d~~~i~~~~h~~gal~~-~~~---d~laL~ll~~Pge~GAD 261 (954)
T PRK12566 198 -----------VDAVDNLAAH-AVFGALLQYPDTHGEIRDLRPLIDQLHGQQALAC-VAA---DLLSLLVLTPPGELGAD 261 (954)
T ss_pred -----------EcchhhcCCC-CEEEEEEECCCCceEEccHHHHHHHHHHcCCEEE-EEe---CHHHHhCCCChhhcCCc
Confidence 1334444555 67788887555 8999999999999999999865 333 2233333334443 799
Q ss_pred EEEeCCCC-----cCCCCCceEEEEeCCc
Q 018231 251 VVTTTTHK-----SLRGPRGAMIFFRKGV 274 (359)
Q Consensus 251 ~v~~s~~K-----~l~gp~gG~l~~~~~~ 274 (359)
+++++++- +|+||..|++.+++++
T Consensus 262 I~vG~~Q~fGvp~~~GGP~ag~~a~~~~~ 290 (954)
T PRK12566 262 VVLGSTQRFGVPMGYGGPHAAYFACRDDY 290 (954)
T ss_pred EEeeCCCcCCCCCCCCCCCeeeeeehHHH
Confidence 99887764 4567777999999975
No 387
>PLN02994 1-aminocyclopropane-1-carboxylate synthase
Probab=98.03 E-value=1.5e-05 Score=66.09 Aligned_cols=60 Identities=12% Similarity=0.077 Sum_probs=49.2
Q ss_pred cCCchhHHHHHHHHHHHHHHHcC--C--CCCCCceeEEECCChH-HHHHHHHhhcCCCCeeeecCCCCC
Q 018231 84 YGGNEYIDMAESLCQKRALEAFR--L--DPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHG 147 (359)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~a~~~g--~--~~~~~~~~v~~tsG~~-a~~~~~~al~~~Gd~Vl~~~~~~~ 147 (359)
|....+..++++++.+++.+.+| + +++ +|++|+|++ ++..++.++++|||.|+++++.|+
T Consensus 88 Y~~~~G~~~lR~AiA~~l~~~~g~~v~~~pd----~Ivvt~Ga~~al~~l~~~l~dpGD~VlVp~P~Y~ 152 (153)
T PLN02994 88 FQDYHGLANFRKAIANFMAEARGGRVKFDAD----MIVLSAGATAANEIIMFCIADPGDAFLVPTPYYA 152 (153)
T ss_pred CCCCCCcHHHHHHHHHHHHHHhCCCCccchh----heEEcCCHHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence 34445678899999999999988 3 454 499999999 888899999999999999995554
No 388
>KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism]
Probab=97.81 E-value=0.0002 Score=63.80 Aligned_cols=255 Identities=16% Similarity=0.126 Sum_probs=138.4
Q ss_pred cCceeeCCCCCCcHHHHHHHHhhhhccCCCCCCCC--cccCCchhHHHHHHHHHHHHHHHcCCCCCCCceeEEECCC-hH
Q 018231 47 KGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGA--RYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSG-SP 123 (359)
Q Consensus 47 ~~i~l~~~~~~~~~~v~~al~~~~~~~~~~g~~~~--~~~~~~~~~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG-~~ 123 (359)
..+++.+|+-.+|..|+..+++.+.+.-.-|..-. .+. +.++...+. .....++++++++... .|+|.-| ++
T Consensus 7 ~vvnFaaGPAklp~~VL~e~qkdl~n~~g~GisV~EmSHR-sk~f~kii~-~tes~lreLlniPdn~---~vlf~QGGGt 81 (370)
T KOG2790|consen 7 RVVNFAAGPAKLPESVLLEAQKDLLNFNGSGISVMEMSHR-SKDFAKIIN-DTESLLRELLNIPDNY---KVLFLQGGGT 81 (370)
T ss_pred ceeecCCCcccCCHHHHHHHHHHhhccCCCcceEEEeccc-chhHHHHHH-HHHHHHHHHHcCCCce---eEEEEeCCCc
Confidence 57999999999999999988888776222221100 111 223333333 3567888999986543 4665433 33
Q ss_pred -HHHHHHHhh--cCCC---CeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCC--CCCCHHHHHHHhhhhC
Q 018231 124 -SNFQVYTAL--LKPH---DRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNEST--GYIDYDQLEKSATLFR 195 (359)
Q Consensus 124 -a~~~~~~al--~~~G---d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~--~~~d~e~l~~~i~~~~ 195 (359)
-..++...+ ++.| |-|++-. .+. ..+. -+...+....+++ +..+-. -.+|.+.++. ++ +
T Consensus 82 ~qFaAv~lNL~glK~g~~AdYiVTGs------WS~--KA~~-EAkk~~~~~~V~~-~~k~y~ygkvPd~~~w~~--~~-d 148 (370)
T KOG2790|consen 82 GQFAAVPLNLIGLKHGRCADYVVTGS------WSA--KAAE-EAKKYGTPNIVIP-KLKSYTYGKVPDPSTWEL--NP-D 148 (370)
T ss_pred ccccccchhhhccccCCccceEEecc------ccH--HHHH-HHHhhCCceEEec-cccccccCcCCChhhccc--CC-C
Confidence 222233333 3556 3444322 110 0001 1111111111121 222122 2456666653 33 4
Q ss_pred CcEEEEcCCC--CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEeCCCCcCCCCCc-eEEEEeC
Q 018231 196 PKLIVAGASA--YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRK 272 (359)
Q Consensus 196 ~k~v~l~~~n--~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~ 272 (359)
.+.++.|.+. -|..++ .+- +-.-+|.+++.|-+.-+-..++|+.+ .+++..+.+|++ ||.| -++++++
T Consensus 149 a~yvyyCaNETVHGVEf~--~~P-~~~~~~~vlVaDmSSnflSrpvDvsk-----~gvi~aGAQKN~-G~aG~Tvvivr~ 219 (370)
T KOG2790|consen 149 ASYVYYCANETVHGVEFD--FIP-VNDPKGAVLVADMSSNFLSRPVDVSK-----FGVIFAGAQKNV-GPAGVTVVIVRK 219 (370)
T ss_pred ccEEEEecCceeeceecC--CCC-CCCCCCceEEEecccchhcCCccchh-----cceEEecccccc-CccccEEEEEeh
Confidence 5677777444 353322 110 22346889999988655556666665 458999999987 7777 7888888
Q ss_pred CcchhccCCcchhhhHHHhhccccCCCCCCCCcHHHHHHHHHHHHHHhccccchhHhhh
Q 018231 273 GVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVF 331 (359)
Q Consensus 273 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~ 331 (359)
++.-....-++..+++.. .......+-||+.+++..+...++.+.+.++...++..
T Consensus 220 dllg~~~~~tP~v~dyk~---~~~NnSlyNTpP~f~iy~~~Lv~~~il~~GGl~a~e~~ 275 (370)
T KOG2790|consen 220 DLLGNALDITPSVLDYKI---MDKNNSLYNTPPCFGIYVMGLVFEWILEKGGLAAMEKL 275 (370)
T ss_pred hhhcccccCCccccceee---eccccccccCCCeeeeeehhhHHHHHHhcccHHHHHHH
Confidence 632111111221111111 11123345799999999999999999988766555444
No 389
>KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only]
Probab=97.70 E-value=0.001 Score=59.83 Aligned_cols=126 Identities=16% Similarity=0.208 Sum_probs=71.1
Q ss_pred HHHHHHHHHHcCCEEEEeccccccccccCCCCCCCC----CceEEEeCCCCcCC-CCCceEEEEeCCcchhccCCcchhh
Q 018231 212 YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE----YADVVTTTTHKSLR-GPRGAMIFFRKGVKEINKQGKEVFY 286 (359)
Q Consensus 212 l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~----~~D~v~~s~~K~l~-gp~gG~l~~~~~~~~~~~~g~~~~~ 286 (359)
++++++..+.+|-+.|.|++|. |.-..+.+-|.+. -.|+++.. |-++ |.+-+.+.+.+
T Consensus 232 Fq~Va~~Vr~aGGv~IaDEVQv-GFGRvG~hyWafq~y~fiPDIVtmg--KpmGNGhPVa~Vattk-------------- 294 (452)
T KOG1403|consen 232 FQAVADAVRSAGGVCIADEVQV-GFGRVGSHYWAFQTYNFIPDIVTMG--KPMGNGHPVAAVATTK-------------- 294 (452)
T ss_pred HHHHHHHHhcCCCeEEeehhhh-cccccchhhhhhhhhccccchheec--ccCCCCCeeeEEeccH--------------
Confidence 6788899999999999999984 3222222223322 15888876 8664 44447788777
Q ss_pred hHHHhhcccc--CCCCCCCCcHHHHHHHHHHHHHHhccccchhHhhhccccchhhhhcccCCCccccCCCC
Q 018231 287 DYEEKINQAV--FPGLQGGPHNHTITGLAVALKQVCTLITFSHIHVFSLHVYPAFVSNQNNSENIEEDKGR 355 (359)
Q Consensus 287 ~~~~~~~~~~--~~~~~gt~~~~~i~al~~Al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 355 (359)
+..+.+...- +-..+|..++....++ +.++.++.|..-++.....-......-.-+..-++||+.+|-
T Consensus 295 eIA~Af~atgv~YFNTyGGnPVsCAv~l-aVm~v~e~E~Lq~ha~~vG~~L~~lL~~~k~kh~~IGDvRGv 364 (452)
T KOG1403|consen 295 EIAQAFHATGVEYFNTYGGNPVSCAVGL-AVMRVCEDENLQEHAQQVGEKLEVLLRRLKQKHECIGDVRGV 364 (452)
T ss_pred HHHHHhccccceehhccCCCchhHHHHH-HHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhccceeccccc
Confidence 4444443311 1112344445554444 447777766444444443222222222224556889998873
No 390
>KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism]
Probab=97.01 E-value=0.0028 Score=58.33 Aligned_cols=76 Identities=20% Similarity=0.280 Sum_probs=50.0
Q ss_pred HHHHHHHhhhhC----C-cEEEEc--CC----CCCChhhHHHHHHHHHHcCCEEEEeccccccccccCC---CCCCCC-C
Q 018231 184 YDQLEKSATLFR----P-KLIVAG--AS----AYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGV---IPSPFE-Y 248 (359)
Q Consensus 184 ~e~l~~~i~~~~----~-k~v~l~--~~----n~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~---~~~~~~-~ 248 (359)
++++|+.|.+.+ + .++++. .+ |.+...-++.+.+++++||+.+|+|++|..|..-..+ ..+.+. .
T Consensus 255 l~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l~~P 334 (484)
T KOG1405|consen 255 LAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGKFWAHEHWNLDSP 334 (484)
T ss_pred HHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCceeeehhcCCCCC
Confidence 566777776532 3 345553 22 2335667899999999999999999999765443332 223333 3
Q ss_pred ceEEEeCCCCcCC
Q 018231 249 ADVVTTTTHKSLR 261 (359)
Q Consensus 249 ~D~v~~s~~K~l~ 261 (359)
.|+|+|| |-|.
T Consensus 335 pD~vTFS--KK~q 345 (484)
T KOG1405|consen 335 PDVVTFS--KKFQ 345 (484)
T ss_pred ccceehh--hhhh
Confidence 8999998 6553
No 391
>KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis]
Probab=96.68 E-value=0.0031 Score=55.83 Aligned_cols=90 Identities=17% Similarity=0.147 Sum_probs=61.7
Q ss_pred CCCCCCHHHHHHHhhhhCCcEEEEcCCC---C-C-ChhhHHHHHHHHHHcCCEEEEeccccccc---c---ccCCCCCCC
Q 018231 178 STGYIDYDQLEKSATLFRPKLIVAGASA---Y-A-RLYDYERIRKVCNKQKAIMLADMAHISGL---V---AAGVIPSPF 246 (359)
Q Consensus 178 ~~~~~d~e~l~~~i~~~~~k~v~l~~~n---~-g-~~~~l~~i~~la~~~~~~vivD~a~~~g~---~---~~~~~~~~~ 246 (359)
+...-|++.+++.+.+....-|++..+. + + ....+++|+.+|..|+++-++..|++.-. + .....-.
T Consensus 137 d~l~tdleav~~~iee~g~dcilci~sttscfapr~pd~leaiaaica~~diphivnnayglqsee~i~~iaa~~~~g-- 214 (432)
T KOG3843|consen 137 DELITDLEAVEAIIEELGEDCILCIHSTTSCFAPRSPDNLEAIAAICAAHDIPHIVNNAYGLQSEECIHKIAAAAECG-- 214 (432)
T ss_pred hHHHHhHHHHHHHHHHhCCceEEEEeecccccCCCCCchHHHHHHHHHccCchhhhccccccchHHHHHHHHHHhhhc--
Confidence 3346689999999887555544332222 2 2 45569999999999999999998754221 1 1111111
Q ss_pred CCceEEEeCCCCcCCCCCceEEEE
Q 018231 247 EYADVVTTTTHKSLRGPRGAMIFF 270 (359)
Q Consensus 247 ~~~D~v~~s~~K~l~gp~gG~l~~ 270 (359)
-+|.++.|..|.|..|-||+++.
T Consensus 215 -rida~vqsldknf~vpvggaiia 237 (432)
T KOG3843|consen 215 -RIDAFVQSLDKNFMVPVGGAIIA 237 (432)
T ss_pred -cHHHHHHHhhhcceeecchhHhh
Confidence 38999999999999999987764
No 392
>KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism]
Probab=96.64 E-value=0.064 Score=49.48 Aligned_cols=199 Identities=19% Similarity=0.173 Sum_probs=110.5
Q ss_pred cCceeeCC-------CCCCcHHHHHHHHhhhhccCCCCCCCCcccCCchhHHHHHHHHHHHHHHHcCCCCC----CCcee
Q 018231 47 KGLELIPS-------ENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPE----KWGVN 115 (359)
Q Consensus 47 ~~i~l~~~-------~~~~~~~v~~al~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~a~~~g~~~~----~~~~~ 115 (359)
.-|||..| .+++-+.|++|-.+.+.....-.| -.-.++.++.+...+ -.+|.+.+ .=.+.
T Consensus 53 ~KiNLgvGaYRdd~gKp~vL~~VrkAE~ql~~~~ldKEY------lpI~Gl~eF~k~sak---La~G~~s~~ik~~Ri~t 123 (427)
T KOG1411|consen 53 KKINLGVGAYRDDNGKPYVLPSVRKAEQQLASLSLDKEY------LPITGLAEFNKLSAK---LALGDNSPVIKEKRIVT 123 (427)
T ss_pred ceeeecccceecCCCCeeeeHHHHHHHHHHhhhcccchh------ccccchHHHHHHHHH---HhhcCCchhhhccceeE
Confidence 45777643 334568888887765542221112 112344555432222 23554221 10012
Q ss_pred EEECCChHHHH--HHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhh
Q 018231 116 VQSLSGSPSNF--QVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL 193 (359)
Q Consensus 116 v~~tsG~~a~~--~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~ 193 (359)
+..-||+.++- +-+.+..-|+..|.+++|+.+.|.... ..+|..+....+ .++.+..+|++.+.+.+.+
T Consensus 124 vQ~lSGTGaLriga~Fl~~f~~~~~I~ip~PTWgNh~~if--------~~ag~~~~~yrY-yd~~t~gld~~g~ledl~~ 194 (427)
T KOG1411|consen 124 VQTLSGTGALRVGAEFLARFYPSRDIYIPDPTWGNHKNIF--------KDAGLPVKFYRY-YDPKTRGLDFKGMLEDLGE 194 (427)
T ss_pred EEeccCcchhhHHHHHHHhhccccceeecCCcccccCccc--------cccCcceeeeee-ccccccccchHHHHHHHhc
Confidence 33345555333 234444567899999998888775422 234544444443 3446678899887777765
Q ss_pred hCC-cEEEE--cCCC-CC---ChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCC------C-Cc-eEEEeCCCC
Q 018231 194 FRP-KLIVA--GASA-YA---RLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPF------E-YA-DVVTTTTHK 258 (359)
Q Consensus 194 ~~~-k~v~l--~~~n-~g---~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~------~-~~-D~v~~s~~K 258 (359)
.-. ..|++ |.+| || +....++|.++.++.+.+-+.|.|. -|....++..... + |. =+++.|..|
T Consensus 195 ~p~gs~ilLhaCaHNPTGvDPt~eqw~ki~~~~~~k~~~pffDmAY-QGfaSG~~d~DA~avR~F~~~g~~~~laQSyAK 273 (427)
T KOG1411|consen 195 APEGSIILLHACAHNPTGVDPTKEQWEKISDLIKEKNLLPFFDMAY-QGFASGDLDKDAQAVRLFVEDGHEILLAQSYAK 273 (427)
T ss_pred CCCCcEEEeehhhcCCCCCCccHHHHHHHHHHhhhccccchhhhhh-cccccCCchhhHHHHHHHHHcCCceEeehhhhh
Confidence 222 23444 4777 76 5667889999999999999999884 3433333322110 0 12 368888999
Q ss_pred cCCCCCc
Q 018231 259 SLRGPRG 265 (359)
Q Consensus 259 ~l~gp~g 265 (359)
.+ |..|
T Consensus 274 NM-GLYg 279 (427)
T KOG1411|consen 274 NM-GLYG 279 (427)
T ss_pred hc-chhh
Confidence 76 4444
No 393
>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]
Probab=96.31 E-value=0.01 Score=58.80 Aligned_cols=154 Identities=12% Similarity=0.164 Sum_probs=88.9
Q ss_pred HHHHHHHHcCCCCCCCceeEEECCChHHHHHHHH-hhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEeccc
Q 018231 97 CQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYT-ALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL 175 (359)
Q Consensus 97 ~~~~~a~~~g~~~~~~~~~v~~tsG~~a~~~~~~-al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 175 (359)
.+..++++.|.+-.. .-++--|+.+-.++.. .-..++.+.++....|+-.++...- .+.-.|+++ + +
T Consensus 168 yQTmi~dlTGL~~aN---ASLLDEgTAaaEAm~l~~~~~krkk~vvd~~~hpqtlsV~~T----Ra~~~~i~v--~---~ 235 (1001)
T KOG2040|consen 168 YQTMITDLTGLPMAN---ASLLDEGTAAAEAMALCNRINKRKKFVVDSNCHPQTLSVVKT----RAKGFGIKV--V---V 235 (1001)
T ss_pred hHHhhhhccCCcccc---hhhhccchhHHHHHHHHHhhcccceEEecCCCCcchhhhhhc----cccccceeE--E---e
Confidence 567788888886533 1233345554443333 3356777788877777766553221 111122221 1 1
Q ss_pred CCCCCCCCHHHHHHHhhhhCCcEEEEcCCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCC-CceEEE
Q 018231 176 NESTGYIDYDQLEKSATLFRPKLIVAGASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE-YADVVT 253 (359)
Q Consensus 176 ~~~~~~~d~e~l~~~i~~~~~k~v~l~~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~-~~D~v~ 253 (359)
. |+.+.... .+ +...+++..++ .|.+.+.+++++.+++.|..+++- ...+..-+.+.|.+ |+|+++
T Consensus 236 ~------~~~~~~~s-~~-~v~gvlvQYP~t~G~i~d~~el~~~a~~~~s~vv~a----tDLLaLtiLrpPgefGaDIav 303 (1001)
T KOG2040|consen 236 S------DIKEADYS-SK-DVSGVLVQYPDTEGSVLDFDELVELAHANGSLVVMA----TDLLALTILRPPGEFGADIAV 303 (1001)
T ss_pred c------CHHHhhcc-cc-ceeEEEEEcCCCCCcccCHHHHHHHhhccCceEEEe----ehhhHHHccCChhhcCceeee
Confidence 1 33332221 22 56777888555 789999999999999998876552 22333333333333 699999
Q ss_pred eCCCCc-----CCCCCceEEEEeCCc
Q 018231 254 TTTHKS-----LRGPRGAMIFFRKGV 274 (359)
Q Consensus 254 ~s~~K~-----l~gp~gG~l~~~~~~ 274 (359)
+|++.. .+||..||+.+++.+
T Consensus 304 GSsQRFGVPlGYGGPHAaFfAv~~~l 329 (1001)
T KOG2040|consen 304 GSSQRFGVPLGYGGPHAAFFAVSESL 329 (1001)
T ss_pred ccccccCccccCCCchHHHHHHHHHH
Confidence 999982 234444777777653
No 394
>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]
Probab=96.01 E-value=0.035 Score=50.47 Aligned_cols=141 Identities=16% Similarity=0.184 Sum_probs=84.3
Q ss_pred EEECCChHHHHH---HHHhhcCCCCeeeecCCCCCcccCccccccccceeeee-eeeEEEecccCCCCCCCCHHHHHHHh
Q 018231 116 VQSLSGSPSNFQ---VYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVS-IFFETMPYRLNESTGYIDYDQLEKSA 191 (359)
Q Consensus 116 v~~tsG~~a~~~---~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~v~~~~~~~~~~~d~e~l~~~i 191 (359)
|...||+.|+.. .+..++ +...|.+..|+...|...+. -+| ..+...++ .+.+.-.+|++.+...+
T Consensus 103 vQslsGTGAl~~~A~Fl~~~~-~~~~VY~SnPTW~nH~~if~--------~aGf~tv~~Y~y-Wd~~~k~~d~e~~Lsdl 172 (410)
T KOG1412|consen 103 VQSLSGTGALRIAADFLATFY-NKNTVYVSNPTWENHHAIFE--------KAGFTTVATYPY-WDAENKCVDLEGFLSDL 172 (410)
T ss_pred eeeccccchhhhhHHHHHHhc-ccceeEecCCchhHHHHHHH--------HcCCceeeeeee-ecCCCceecHHHHHHHH
Confidence 444566655442 223333 45668888877776643222 122 11222222 34455688999998888
Q ss_pred hhhCC-c-EEEE--cCCC-CC---ChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCC-------Cc-eEEEeC
Q 018231 192 TLFRP-K-LIVA--GASA-YA---RLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE-------YA-DVVTTT 255 (359)
Q Consensus 192 ~~~~~-k-~v~l--~~~n-~g---~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~-------~~-D~v~~s 255 (359)
.. .| + ++++ |.+| || +.....+|++..++.+.+.+-|-|. -|....|.....+. +. =+++.|
T Consensus 173 ~~-APe~si~iLhaCAhNPTGmDPT~EQW~qia~vik~k~lf~fFDiAY-QGfASGD~~~DawAiR~fV~~g~e~fv~QS 250 (410)
T KOG1412|consen 173 ES-APEGSIIILHACAHNPTGMDPTREQWKQIADVIKSKNLFPFFDIAY-QGFASGDLDADAWAIRYFVEQGFELFVCQS 250 (410)
T ss_pred hh-CCCCcEEeeeccccCCCCCCCCHHHHHHHHHHHHhcCceeeeehhh-cccccCCccccHHHHHHHHhcCCeEEEEhh
Confidence 75 33 3 3344 4677 77 5566889999999999999999884 45555444332211 22 279999
Q ss_pred CCCcCC--CCCceEE
Q 018231 256 THKSLR--GPRGAMI 268 (359)
Q Consensus 256 ~~K~l~--gp~gG~l 268 (359)
+.|.|+ +.+-|-+
T Consensus 251 FaKNfGlYneRvGnl 265 (410)
T KOG1412|consen 251 FAKNFGLYNERVGNL 265 (410)
T ss_pred hhhhcccccccccce
Confidence 999873 4444533
No 395
>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.
Probab=93.87 E-value=0.06 Score=49.85 Aligned_cols=153 Identities=14% Similarity=0.046 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHhhcCC----C--CeeeecCCCCCcccCcccccccccee
Q 018231 90 IDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKP----H--DRIMALDLPHGGHLSHGYQTDTKKIS 162 (359)
Q Consensus 90 ~~~l~~~~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~al~~~----G--d~Vl~~~~~~~~~~~~~~~~~~~~~~ 162 (359)
..+|++.+|+.-.-.=++..+. --|++++|++ ++.+++.+|... + -.|+... |.|+.|+....
T Consensus 45 s~eL~~~Ir~LH~~VGNAvt~g--r~IV~GtGsTQL~~AalyALSp~~~~~~~p~~VVa~a--------PYY~~Y~~qt~ 114 (363)
T PF04864_consen 45 SPELERQIRRLHRVVGNAVTDG--RYIVFGTGSTQLFNAALYALSPNASPSSSPASVVAAA--------PYYSSYPEQTD 114 (363)
T ss_dssp -HHHHHHHHHHHHHH-SB--TT--SEEEEECHHHHHHHHHHHHHCHHT-TTSSSEEEEE-S--------S--CHHHHHCC
T ss_pred cHHHHHHHHHHHHHhccccccC--cEEEEcCCHHHHHHHHHHhcCCCCCCCCCCceeEecC--------CCccchHHHHH
Confidence 4677766655444333443332 2599999999 777777777322 2 2455555 44444442222
Q ss_pred eee-eeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhhHHHHHHHHHHcCCEEEEecccccccc-c
Q 018231 163 AVS-IFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLV-A 238 (359)
Q Consensus 163 ~~g-~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~-~ 238 (359)
+.. ..++.- -|...+. + .-+. .+-+=+++ |+| -|.+. + .+++.-+..+|.|-|..-.+. |
T Consensus 115 ~f~s~~y~w~---Gda~~~~-~------~~~~-~~~IElVTSPNNPDG~lr---~--~V~~g~~~k~I~D~AYYWPhyTp 178 (363)
T PF04864_consen 115 FFDSRLYKWA---GDASNFK-N------SDNP-SPYIELVTSPNNPDGQLR---E--AVLNGSSGKVIHDLAYYWPHYTP 178 (363)
T ss_dssp CT-BTTEEEE---EECCCGT-T-------S-C-CGEEEEEESS-TTT-----------SSTTTEEEEEEE-TT-STTTS-
T ss_pred hccccCcccc---ccHHhhc-c------CCCC-CCeEEEEeCCCCCccccc---c--hhcCCCCcceeeeeeeecccccc
Confidence 221 111111 1111111 0 0001 12232445 555 44321 1 123444566899998765433 2
Q ss_pred cCCCCCCCCCceEEEeCCCCcCCCCCc---eEEEEeCC
Q 018231 239 AGVIPSPFEYADVVTTTTHKSLRGPRG---AMIFFRKG 273 (359)
Q Consensus 239 ~~~~~~~~~~~D~v~~s~~K~l~gp~g---G~l~~~~~ 273 (359)
+.-. . +-|++.|+.+| +.|..| |..+++|+
T Consensus 179 I~~~-a---D~DiMLFT~SK-~TGHAGSR~GWAlVKD~ 211 (363)
T PF04864_consen 179 ITAP-A---DHDIMLFTLSK-LTGHAGSRFGWALVKDE 211 (363)
T ss_dssp --S--B-----SEEEEEHHH-HCS-GGG-EEEEEES-H
T ss_pred cCCC-C---CCceEEEEEec-ccCccccccceeeecCH
Confidence 2111 1 25899999999 456556 99999996
No 396
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=70.63 E-value=18 Score=34.71 Aligned_cols=47 Identities=15% Similarity=0.117 Sum_probs=35.0
Q ss_pred CHHHHHHHhhh--hCCcEEEEcCCCCCChhhHHHHHHHHHHcCCEEEEe
Q 018231 183 DYDQLEKSATL--FRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLAD 229 (359)
Q Consensus 183 d~e~l~~~i~~--~~~k~v~l~~~n~g~~~~l~~i~~la~~~~~~vivD 229 (359)
+...|.+.+.. .+.++++++--+-|.+.+.+.+.++|+++|+++++|
T Consensus 129 ~~~~ll~~~~~~l~~~~~vVLSDY~KG~L~~~q~~I~~ar~~~~pVLvD 177 (467)
T COG2870 129 DENKLLEKIKNALKSFDALVLSDYAKGVLTNVQKMIDLAREAGIPVLVD 177 (467)
T ss_pred hHHHHHHHHHHHhhcCCEEEEeccccccchhHHHHHHHHHHcCCcEEEC
Confidence 34444444432 146788887555678888999999999999999999
No 397
>PRK09375 quinolinate synthetase; Provisional
Probab=64.97 E-value=43 Score=31.24 Aligned_cols=58 Identities=16% Similarity=0.220 Sum_probs=36.6
Q ss_pred EEECCChH--HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhh
Q 018231 116 VQSLSGSP--SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL 193 (359)
Q Consensus 116 v~~tsG~~--a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~ 193 (359)
+++..|.. |-. ..+++|+.+|+++++.-+. .++ ..++.+++++..++
T Consensus 70 ~IvfcGV~FMaEt---AkIL~p~k~VllP~~~AgC-------------~mA---------------d~~~~~~i~~lk~~ 118 (319)
T PRK09375 70 TIVFCGVHFMAET---AKILSPEKTVLLPDLEAGC-------------SLA---------------DMCPAEEFRAFKEA 118 (319)
T ss_pred EEEEecceehhhh---HHhcCCCCeEECCCCCCCC-------------ccc---------------ccCCHHHHHHHHHH
Confidence 55667777 444 2567899999998832221 111 23467888877666
Q ss_pred hCCcEEEEcCCC
Q 018231 194 FRPKLIVAGASA 205 (359)
Q Consensus 194 ~~~k~v~l~~~n 205 (359)
++.+++++..|
T Consensus 119 -~p~a~vVaYvN 129 (319)
T PRK09375 119 -HPDATVVTYVN 129 (319)
T ss_pred -CCCCEEEEEeC
Confidence 66777777666
No 398
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=57.79 E-value=46 Score=25.69 Aligned_cols=50 Identities=8% Similarity=-0.005 Sum_probs=36.3
Q ss_pred CCHHHHHHHhhhhCCcEEEEcCCCCCChhhHHHHHHHHHHc---CCEEEEecc
Q 018231 182 IDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQ---KAIMLADMA 231 (359)
Q Consensus 182 ~d~e~l~~~i~~~~~k~v~l~~~n~g~~~~l~~i~~la~~~---~~~vivD~a 231 (359)
..++++.+.+.+.++++|.++.+++.....+.++.+.+++. ++.+++=+.
T Consensus 37 ~~~~~l~~~~~~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG~ 89 (119)
T cd02067 37 VPPEEIVEAAKEEDADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGGA 89 (119)
T ss_pred CCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEECC
Confidence 45777777777768999999876666667788888888876 455565444
No 399
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=55.54 E-value=29 Score=26.76 Aligned_cols=49 Identities=20% Similarity=0.228 Sum_probs=39.1
Q ss_pred CCCCHHHHHHHhhhhCCcEEEEcCCCCCChhhHHHHHHHHHHcCCEEEEe
Q 018231 180 GYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLAD 229 (359)
Q Consensus 180 ~~~d~e~l~~~i~~~~~k~v~l~~~n~g~~~~l~~i~~la~~~~~~vivD 229 (359)
..+++++++..+.+ ++..|++..-.+|.+.-.++..+++++.++-|++-
T Consensus 47 Hkl~~eEle~~lee-~~E~ivvGTG~~G~l~l~~ea~e~~r~k~~~vi~~ 95 (121)
T COG1504 47 HKLALEELEELLEE-GPEVIVVGTGQSGMLELSEEAREFFRKKGCEVIEL 95 (121)
T ss_pred cccCHHHHHHHHhc-CCcEEEEecCceeEEEeCHHHHHHHHhcCCeEEEe
Confidence 47899999999987 89888887555776666678889999999776653
No 400
>smart00642 Aamy Alpha-amylase domain.
Probab=55.05 E-value=15 Score=30.70 Aligned_cols=26 Identities=8% Similarity=0.344 Sum_probs=23.5
Q ss_pred CCChhhHHHHHHHHHHcCCEEEEecc
Q 018231 206 YARLYDYERIRKVCNKQKAIMLADMA 231 (359)
Q Consensus 206 ~g~~~~l~~i~~la~~~~~~vivD~a 231 (359)
+|+..+++++++-||++|+-||.|.+
T Consensus 66 ~Gt~~d~~~lv~~~h~~Gi~vilD~V 91 (166)
T smart00642 66 FGTMEDFKELVDAAHARGIKVILDVV 91 (166)
T ss_pred cCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 56778899999999999999999976
No 401
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=52.62 E-value=50 Score=24.74 Aligned_cols=70 Identities=11% Similarity=0.120 Sum_probs=40.0
Q ss_pred cEEEEcCCCCCChhhHH-HHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEeCCC--CcCCCCCceEEEEeC
Q 018231 197 KLIVAGASAYARLYDYE-RIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTH--KSLRGPRGAMIFFRK 272 (359)
Q Consensus 197 k~v~l~~~n~g~~~~l~-~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~--K~l~gp~gG~l~~~~ 272 (359)
|++++|.+..|+-.-++ .+.++++++|+.+-+|..+ .+.... ...++|+++.|.+ ..|...+.|.+++-.
T Consensus 3 KIL~aCG~GvgSS~~ik~kve~~l~~~gi~~~~~~~~-v~~~~~-----~~~~aDiiv~s~~l~~~~~~~~~~~v~~~~ 75 (93)
T COG3414 3 KILAACGNGVGSSTMIKMKVEEVLKELGIDVDVEQCA-VDEIKA-----LTDGADIIVTSTKLADEFEDIPKGYVVITG 75 (93)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHHcCCCceeeeEE-eccccc-----CCCcccEEEEehHhhhhcCcCCCceEEEEc
Confidence 56777766655444444 6888999999984444332 232221 1124899999865 345332335555433
No 402
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=52.21 E-value=1.1e+02 Score=28.52 Aligned_cols=94 Identities=16% Similarity=0.086 Sum_probs=57.2
Q ss_pred EEECCChH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhh
Q 018231 116 VQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF 194 (359)
Q Consensus 116 v~~tsG~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~ 194 (359)
|++|.|+. .-...+..|++.|-.|++.+.-..++..... ......+. ....|-+.|.+.+.++
T Consensus 3 iLVtGGAGYIGSHtv~~Ll~~G~~vvV~DNL~~g~~~~v~----------~~~~~f~~------gDi~D~~~L~~vf~~~ 66 (329)
T COG1087 3 VLVTGGAGYIGSHTVRQLLKTGHEVVVLDNLSNGHKIALL----------KLQFKFYE------GDLLDRALLTAVFEEN 66 (329)
T ss_pred EEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCCHHHhh----------hccCceEE------eccccHHHHHHHHHhc
Confidence 78888877 4445888889999999988855555532111 10011121 1234788899999887
Q ss_pred CCcEEEEc-CC-CCC--ChhhHH----------HHHHHHHHcCCE
Q 018231 195 RPKLIVAG-AS-AYA--RLYDYE----------RIRKVCNKQKAI 225 (359)
Q Consensus 195 ~~k~v~l~-~~-n~g--~~~~l~----------~i~~la~~~~~~ 225 (359)
++.+|+=- .. ..| ...|++ .|.+.|+++|+.
T Consensus 67 ~idaViHFAa~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~ 111 (329)
T COG1087 67 KIDAVVHFAASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVK 111 (329)
T ss_pred CCCEEEECccccccchhhhCHHHHHhhchHhHHHHHHHHHHhCCC
Confidence 88877632 11 133 222322 567788898874
No 403
>KOG2142 consensus Molybdenum cofactor sulfurase [Coenzyme transport and metabolism]
Probab=51.73 E-value=5.5 Score=40.16 Aligned_cols=163 Identities=16% Similarity=0.119 Sum_probs=81.1
Q ss_pred HHHHHHHHcCCCCCCCceeEEECCChH-HHHHHHHhh--cCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEec
Q 018231 97 CQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTAL--LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPY 173 (359)
Q Consensus 97 ~~~~~a~~~g~~~~~~~~~v~~tsG~~-a~~~~~~al--~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~ 173 (359)
++-++..+|+....++ .++++. .+ |+..++.++ ...+.+|--...++.+|.+..-...+. ...|..+-.+ .
T Consensus 69 ~r~ril~~f~tta~dy--~v~lp~-~t~al~~vae~fp~~s~tekid~lrs~~y~hls~s~~~~~~--~~~~~gl~sy-~ 142 (728)
T KOG2142|consen 69 VRLRILALFNTTAFDY--EVSLPA-LTEALKLVAEAFPFYSQTEKIDNLRSDEYGHLSSSGHLMRL--DYSGIGLFSY-S 142 (728)
T ss_pred HHHHHHHHhccccccc--cchhHH-HHHHHHHHHHhCccccccccccchhhhhhcccccccceeee--eeeccceEEe-e
Confidence 4456677777654442 588888 55 777677776 456666655555544444322111110 1111111111 0
Q ss_pred ccCC--CCCCCCHHHHHHHhhhhCCcEEEEc--CCC-CCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCC
Q 018231 174 RLNE--STGYIDYDQLEKSATLFRPKLIVAG--ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEY 248 (359)
Q Consensus 174 ~~~~--~~~~~d~e~l~~~i~~~~~k~v~l~--~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~ 248 (359)
.... +....++.+. .... .-..++.. .+| -|.......+-.+.-..+-++++|++....+.+++....+
T Consensus 143 q~~~i~~~~~~sls~~--~~~l-s~~~L~~g~a~~nfeg~kik~ri~d~L~ipe~~y~lldtaSrvSaf~Ldaesy~--- 216 (728)
T KOG2142|consen 143 QTNEISDSEEFSLSES--EANL-SEHSLFGGAAQSNFEGDKIKLRIMDRLNIPESEYVLLDTASRVSAFPLDAESYP--- 216 (728)
T ss_pred eeeecccccccccccc--ccCc-ccchhcccchhcccccceeeeeeecccccCCceEEEEEeecccccccchHhhCC---
Confidence 1110 0001111111 1111 11222221 333 2332211122222224577899999988888999888888
Q ss_pred ceEEEeCCCCcCCCCCceEEEEeC
Q 018231 249 ADVVTTTTHKSLRGPRGAMIFFRK 272 (359)
Q Consensus 249 ~D~v~~s~~K~l~gp~gG~l~~~~ 272 (359)
.|++.. +.|.|+-|.|++++.+.
T Consensus 217 f~~~~~-lltiFgyetgAvlv~~r 239 (728)
T KOG2142|consen 217 FDFNPK-LLTIFGYETGAVLVMNR 239 (728)
T ss_pred Ccccch-heeecCCCchhhHHHhh
Confidence 888888 89988666644444443
No 404
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=50.99 E-value=37 Score=25.90 Aligned_cols=50 Identities=4% Similarity=0.069 Sum_probs=39.2
Q ss_pred CCCHHHHHHHhhhhCCcEEEEcCCCCCChhhHHHHHHHHHHcCCEEEEec
Q 018231 181 YIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADM 230 (359)
Q Consensus 181 ~~d~e~l~~~i~~~~~k~v~l~~~n~g~~~~l~~i~~la~~~~~~vivD~ 230 (359)
..++.++.+.+...-..++-+.+...|-+....+++++|+++|+.+..-.
T Consensus 4 ~~~~~~~~~li~~~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~ 53 (111)
T PF13378_consen 4 LFSLHDFRRLIEAGAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHS 53 (111)
T ss_dssp SSSHHHHHHHHHTTSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBS
T ss_pred CCCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecC
Confidence 34778888888764456776666667888899999999999999988876
No 405
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=50.90 E-value=18 Score=36.99 Aligned_cols=31 Identities=10% Similarity=0.225 Sum_probs=27.4
Q ss_pred cCCC-CCChhhHHHHHHHHHHcCCEEEEeccc
Q 018231 202 GASA-YARLYDYERIRKVCNKQKAIMLADMAH 232 (359)
Q Consensus 202 ~~~n-~g~~~~l~~i~~la~~~~~~vivD~a~ 232 (359)
.|++ +|+..+++++++-|+++||-||+|-+.
T Consensus 205 Ap~sryGtPedfk~fVD~aH~~GIgViLD~V~ 236 (628)
T COG0296 205 APTSRYGTPEDFKALVDAAHQAGIGVILDWVP 236 (628)
T ss_pred cccccCCCHHHHHHHHHHHHHcCCEEEEEecC
Confidence 3555 889999999999999999999999874
No 406
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=49.86 E-value=16 Score=33.13 Aligned_cols=29 Identities=10% Similarity=0.344 Sum_probs=25.4
Q ss_pred CCCCCChhhHHHHHHHHHHcCCEEEEecc
Q 018231 203 ASAYARLYDYERIRKVCNKQKAIMLADMA 231 (359)
Q Consensus 203 ~~n~g~~~~l~~i~~la~~~~~~vivD~a 231 (359)
.+.+|+..+++++++.||++|+-||+|.+
T Consensus 45 d~~~Gt~~d~~~Lv~~~h~~gi~VilD~V 73 (316)
T PF00128_consen 45 DPRFGTMEDFKELVDAAHKRGIKVILDVV 73 (316)
T ss_dssp STTTBHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred ccccchhhhhhhhhhccccccceEEEeee
Confidence 34467888999999999999999999977
No 407
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=48.73 E-value=50 Score=28.30 Aligned_cols=72 Identities=15% Similarity=0.197 Sum_probs=45.7
Q ss_pred CCCHHHHHHHhhhhCCcEEEEcCCCCCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEeCCCC
Q 018231 181 YIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHK 258 (359)
Q Consensus 181 ~~d~e~l~~~i~~~~~k~v~l~~~n~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K 258 (359)
.+.++++.+.++. ...+|.+..++-.+..+++++.+-.|++..+++-|.+-.-..... ...+ +|++.+..+=
T Consensus 51 TPT~~ev~~l~~a-GadIIAlDaT~R~Rp~~l~~li~~i~~~~~l~MADist~ee~~~A--~~~G---~D~I~TTLsG 122 (192)
T PF04131_consen 51 TPTLKEVDALAEA-GADIIALDATDRPRPETLEELIREIKEKYQLVMADISTLEEAINA--AELG---FDIIGTTLSG 122 (192)
T ss_dssp S-SHHHHHHHHHC-T-SEEEEE-SSSS-SS-HHHHHHHHHHCTSEEEEE-SSHHHHHHH--HHTT----SEEE-TTTT
T ss_pred CCCHHHHHHHHHc-CCCEEEEecCCCCCCcCHHHHHHHHHHhCcEEeeecCCHHHHHHH--HHcC---CCEEEccccc
Confidence 4578888888876 788999886664444789999988898889999998743222211 2233 8999887543
No 408
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=48.18 E-value=55 Score=25.11 Aligned_cols=50 Identities=14% Similarity=0.216 Sum_probs=38.1
Q ss_pred CHHHHHHHhhhhCCcEEEEcCCCCCChhhHHHHHHHHHHc--CCEEEEeccc
Q 018231 183 DYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQ--KAIMLADMAH 232 (359)
Q Consensus 183 d~e~l~~~i~~~~~k~v~l~~~n~g~~~~l~~i~~la~~~--~~~vivD~a~ 232 (359)
+.+++.+.+.+.++++|.++.+.+.......++++..++. ++.+++=+.|
T Consensus 39 ~~~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~~ 90 (121)
T PF02310_consen 39 PPEELVEALRAERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGPH 90 (121)
T ss_dssp -HHHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEESS
T ss_pred CHHHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECCc
Confidence 4588888887778999988754556666777888887776 7899998776
No 409
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=47.93 E-value=20 Score=35.52 Aligned_cols=28 Identities=11% Similarity=0.121 Sum_probs=25.6
Q ss_pred CCCCChhhHHHHHHHHHHcCCEEEEecc
Q 018231 204 SAYARLYDYERIRKVCNKQKAIMLADMA 231 (359)
Q Consensus 204 ~n~g~~~~l~~i~~la~~~~~~vivD~a 231 (359)
+.+|+..+++++++.||++|+.||+|.+
T Consensus 75 ~~fGt~~dl~~Li~~~H~~Gi~vi~D~V 102 (479)
T PRK09441 75 TKYGTKEELLNAIDALHENGIKVYADVV 102 (479)
T ss_pred cCcCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 4578888999999999999999999987
No 410
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=46.58 E-value=37 Score=31.69 Aligned_cols=78 Identities=17% Similarity=0.057 Sum_probs=45.3
Q ss_pred eEEECCChH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhh
Q 018231 115 NVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL 193 (359)
Q Consensus 115 ~v~~tsG~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~ 193 (359)
.|++|.|+- .-.+....|++.|+.|++.+.-..+........+. ....+..+..+..++ .|.+.|++..++
T Consensus 4 ~VLVtGgaGyiGsht~l~L~~~gy~v~~vDNl~n~~~~sl~r~~~--l~~~~~~v~f~~~Dl------~D~~~L~kvF~~ 75 (343)
T KOG1371|consen 4 HVLVTGGAGYIGSHTVLALLKRGYGVVIVDNLNNSYLESLKRVRQ--LLGEGKSVFFVEGDL------NDAEALEKLFSE 75 (343)
T ss_pred EEEEecCCcceehHHHHHHHhCCCcEEEEecccccchhHHHHHHH--hcCCCCceEEEEecc------CCHHHHHHHHhh
Confidence 488887777 44447778899999999988544444322221111 111112233333233 388999998887
Q ss_pred hCCcEEE
Q 018231 194 FRPKLIV 200 (359)
Q Consensus 194 ~~~k~v~ 200 (359)
.+...|+
T Consensus 76 ~~fd~V~ 82 (343)
T KOG1371|consen 76 VKFDAVM 82 (343)
T ss_pred cCCceEE
Confidence 6655544
No 411
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=44.86 E-value=1e+02 Score=28.65 Aligned_cols=55 Identities=15% Similarity=0.169 Sum_probs=36.5
Q ss_pred CCCCCCHHHHHHHhhhh-----CCcEEEEc---CCCCCChhhHHHHHHHHHHcCCEEEEecccc
Q 018231 178 STGYIDYDQLEKSATLF-----RPKLIVAG---ASAYARLYDYERIRKVCNKQKAIMLADMAHI 233 (359)
Q Consensus 178 ~~~~~d~e~l~~~i~~~-----~~k~v~l~---~~n~g~~~~l~~i~~la~~~~~~vivD~a~~ 233 (359)
.+..++.+++++.++.. +-.+|+++ |++.+ ...+.+|.++|++.|+.+++|....
T Consensus 107 ~Gp~is~~~~~~~l~~~~~~l~~~d~VvlsGSlP~g~~-~d~y~~li~~~~~~g~~vilD~Sg~ 169 (310)
T COG1105 107 PGPEISEAELEQFLEQLKALLESDDIVVLSGSLPPGVP-PDAYAELIRILRQQGAKVILDTSGE 169 (310)
T ss_pred CCCCCCHHHHHHHHHHHHHhcccCCEEEEeCCCCCCCC-HHHHHHHHHHHHhcCCeEEEECChH
Confidence 34567777666544321 23466665 33333 3458899999999999999998753
No 412
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=44.70 E-value=29 Score=35.25 Aligned_cols=104 Identities=15% Similarity=0.035 Sum_probs=53.4
Q ss_pred eEEECCChHHHHHHHHhhcCCCCeeeecCCCCCcccCcccccccc---ceeeeeeeeEEEecccCCCCCCCCH---HHHH
Q 018231 115 NVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTK---KISAVSIFFETMPYRLNESTGYIDY---DQLE 188 (359)
Q Consensus 115 ~v~~tsG~~a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~---~~~~~g~~~~~v~~~~~~~~~~~d~---e~l~ 188 (359)
.|+.|.|+..+-.-+-+++.+|=.+++. |...+.+. .....|..+..+ + ..++. ..+.
T Consensus 37 vvmPTGgGKSlCyQiPAll~~G~TLVVS---------PLiSLM~DQV~~l~~~Gi~A~~l----n---S~l~~~e~~~v~ 100 (590)
T COG0514 37 VVMPTGGGKSLCYQIPALLLEGLTLVVS---------PLISLMKDQVDQLEAAGIRAAYL----N---STLSREERQQVL 100 (590)
T ss_pred EEccCCCCcchHhhhHHHhcCCCEEEEC---------chHHHHHHHHHHHHHcCceeehh----h---cccCHHHHHHHH
Confidence 3555666664444677888888655544 44443332 222334333222 2 22233 3344
Q ss_pred HHhhhhCCcEEEEcCCCCCChhhHHHHHHHHHHcCCEEEEecccccccc
Q 018231 189 KSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLV 237 (359)
Q Consensus 189 ~~i~~~~~k~v~l~~~n~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~ 237 (359)
..+...+.+++++.|-..-...-++.|. +-.=.++++|+||++.-.
T Consensus 101 ~~l~~g~~klLyisPErl~~~~f~~~L~---~~~i~l~vIDEAHCiSqW 146 (590)
T COG0514 101 NQLKSGQLKLLYISPERLMSPRFLELLK---RLPISLVAIDEAHCISQW 146 (590)
T ss_pred HHHhcCceeEEEECchhhcChHHHHHHH---hCCCceEEechHHHHhhc
Confidence 4554445788888744421111222222 333458999999986544
No 413
>cd05126 Mth938 Mth938 domain. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. The function of the protein has not been determined.
Probab=42.92 E-value=84 Score=24.61 Aligned_cols=48 Identities=17% Similarity=0.076 Sum_probs=34.7
Q ss_pred CCCHHHHHHHhhhhCCcEEEEcCCCCCChhhHHHHHHHHHHcCCEEEEe
Q 018231 181 YIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLAD 229 (359)
Q Consensus 181 ~~d~e~l~~~i~~~~~k~v~l~~~n~g~~~~l~~i~~la~~~~~~vivD 229 (359)
.+++++++..+.. ++.+|++..-..+....-.++.+.++++|+-+.+-
T Consensus 45 ~l~~~~l~~ll~~-~peivliGTG~~~~~~~~~~~~~~l~~~Gi~ve~m 92 (117)
T cd05126 45 GLQPEELEELLEE-GVEVIVIGTGQSGALKVPPETVEKLEKRGVEVLVL 92 (117)
T ss_pred cCCHHHHHHHHhc-CCCEEEEcCCCCccccCCHHHHHHHHhcCCEEEEc
Confidence 5789999999987 79988887333444333456677888899877663
No 414
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=42.81 E-value=96 Score=24.84 Aligned_cols=46 Identities=11% Similarity=0.022 Sum_probs=29.8
Q ss_pred CHHHHHHHhhhhCCcEEEEc----------CCCCC------ChhhHHHHHHHHHHcCCEEEE
Q 018231 183 DYDQLEKSATLFRPKLIVAG----------ASAYA------RLYDYERIRKVCNKQKAIMLA 228 (359)
Q Consensus 183 d~e~l~~~i~~~~~k~v~l~----------~~n~g------~~~~l~~i~~la~~~~~~viv 228 (359)
|++++.+.+++.+...+++. |+..+ ....+.++++.|++.|+-+++
T Consensus 1 D~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~a 62 (132)
T PF14871_consen 1 DPEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPA 62 (132)
T ss_pred CHHHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEE
Confidence 56677777766566665551 22222 223478999999999987665
No 415
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=42.07 E-value=86 Score=31.29 Aligned_cols=72 Identities=17% Similarity=0.238 Sum_probs=47.2
Q ss_pred CCCHHHHHHHhhhhCCcEEEEcCCCCCChhhHHHHHHHHHHc--CCEEEEeccccccccccCC-CCCCCCCceEEEeCC
Q 018231 181 YIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQ--KAIMLADMAHISGLVAAGV-IPSPFEYADVVTTTT 256 (359)
Q Consensus 181 ~~d~e~l~~~i~~~~~k~v~l~~~n~g~~~~l~~i~~la~~~--~~~vivD~a~~~g~~~~~~-~~~~~~~~D~v~~s~ 256 (359)
.++.+++.+.+.+.++++|.++. .++......++++.+++. ++.+|+=+.|+. ..+... ...+ .+|+++.+-
T Consensus 49 ~~~~~~~~~~l~~~~pdvVgis~-~t~~~~~a~~~~~~~k~~~P~~~iV~GG~h~t-~~~~~~l~~~p--~vD~Vv~GE 123 (497)
T TIGR02026 49 PLTDEKLVERLRAHCPDLVLITA-ITPAIYIACETLKFARERLPNAIIVLGGIHPT-FMFHQVLTEAP--WIDFIVRGE 123 (497)
T ss_pred CCCHHHHHHHHHhcCcCEEEEec-CcccHHHHHHHHHHHHHHCCCCEEEEcCCCcC-cCHHHHHhcCC--CccEEEeCC
Confidence 45678888888776899988862 245555677888888887 899999888743 222221 1111 367776653
No 416
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=41.79 E-value=1.1e+02 Score=20.74 Aligned_cols=46 Identities=20% Similarity=0.176 Sum_probs=30.2
Q ss_pred CCCCHHHHHHHhhhhCCcEEEEcCCCCCChhhHHHHHHHHHHcCCEEE
Q 018231 180 GYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIML 227 (359)
Q Consensus 180 ~~~d~e~l~~~i~~~~~k~v~l~~~n~g~~~~l~~i~~la~~~~~~vi 227 (359)
+...++++.+...+.+.+.+.++.+++ .....++.+.+++.|+.++
T Consensus 13 ~~~~~~~~~~~a~~~g~~~v~iTDh~~--~~~~~~~~~~~~~~gi~~i 58 (67)
T smart00481 13 GALSPEELVKRAKELGLKAIAITDHGN--LFGAVEFYKAAKKAGIKPI 58 (67)
T ss_pred ccCCHHHHHHHHHHcCCCEEEEeeCCc--ccCHHHHHHHHHHcCCeEE
Confidence 455777777766665888998885551 1123456677778887665
No 417
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=40.86 E-value=38 Score=31.75 Aligned_cols=83 Identities=12% Similarity=0.200 Sum_probs=50.4
Q ss_pred CCHHHHHHHhhhhCCcEEEEc----CCC-CCChhhHHHHHHHHHHcC------CEEEEeccccccccccC-C--CCCCCC
Q 018231 182 IDYDQLEKSATLFRPKLIVAG----ASA-YARLYDYERIRKVCNKQK------AIMLADMAHISGLVAAG-V--IPSPFE 247 (359)
Q Consensus 182 ~d~e~l~~~i~~~~~k~v~l~----~~n-~g~~~~l~~i~~la~~~~------~~vivD~a~~~g~~~~~-~--~~~~~~ 247 (359)
+=+|.++.+..+ +..+|++. -+| ..-..+++.|.+++++.. ++++.|+..+-..+..- . ...
T Consensus 209 VafDAi~~Akar-~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav--- 284 (340)
T COG0552 209 VAFDAIQAAKAR-GIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAV--- 284 (340)
T ss_pred HHHHHHHHHHHc-CCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhc---
Confidence 345667776666 78888884 444 445668999999998864 67777987443222110 0 112
Q ss_pred CceEEEeCCCCcCCCCCceEEEE
Q 018231 248 YADVVTTTTHKSLRGPRGAMIFF 270 (359)
Q Consensus 248 ~~D~v~~s~~K~l~gp~gG~l~~ 270 (359)
+.|-++.+ |.=+...||.++.
T Consensus 285 ~l~GiIlT--KlDgtAKGG~il~ 305 (340)
T COG0552 285 GLDGIILT--KLDGTAKGGIILS 305 (340)
T ss_pred CCceEEEE--ecccCCCcceeee
Confidence 25655554 7435667776663
No 418
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=40.14 E-value=52 Score=27.63 Aligned_cols=48 Identities=15% Similarity=0.178 Sum_probs=35.8
Q ss_pred CHHHHHHHhhhhCCcEEEEcCCCCCChhhHHHHHHHHHHcC--CEEEEeccccc
Q 018231 183 DYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQK--AIMLADMAHIS 234 (359)
Q Consensus 183 d~e~l~~~i~~~~~k~v~l~~~n~g~~~~l~~i~~la~~~~--~~vivD~a~~~ 234 (359)
|..++++.+.. ..+.+++- +|.+..++++.+..+++| +++++|-..+.
T Consensus 12 ~~~~le~~les-~~~~vflL---~~~i~~ik~ivk~lK~~gK~vfiHvDLv~Gl 61 (181)
T COG1954 12 DNKDLEKALES-ESQYVFLL---TGHILNIKEIVKKLKNRGKTVFIHVDLVEGL 61 (181)
T ss_pred hHHHHHHHhcC-CCeEEEEE---echhhhHHHHHHHHHhCCcEEEEEeHHhccc
Confidence 66788888876 67777665 345668999999999886 56788876543
No 419
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=39.66 E-value=80 Score=28.36 Aligned_cols=92 Identities=14% Similarity=0.173 Sum_probs=52.1
Q ss_pred eEEECCChH-HHHHHHHhhcCCCCeeeecC-CCCCcccCccccccccceeeeeeeeEEEecccCCCCCCC-CHHHHHHHh
Q 018231 115 NVQSLSGSP-SNFQVYTALLKPHDRIMALD-LPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYI-DYDQLEKSA 191 (359)
Q Consensus 115 ~v~~tsG~~-a~~~~~~al~~~Gd~Vl~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~-d~e~l~~~i 191 (359)
.|.+-.|++ +.. +...|...|. |+++. .++++..... ...+ . .+ -.+.+ |.+.+++.+
T Consensus 2 ~ILvlgGTtE~r~-la~~L~~~g~-v~~sv~t~~g~~~~~~--------~~~~--~-~v------~~G~lg~~~~l~~~l 62 (249)
T PF02571_consen 2 KILVLGGTTEGRK-LAERLAEAGY-VIVSVATSYGGELLKP--------ELPG--L-EV------RVGRLGDEEGLAEFL 62 (249)
T ss_pred EEEEEechHHHHH-HHHHHHhcCC-EEEEEEhhhhHhhhcc--------ccCC--c-eE------EECCCCCHHHHHHHH
Confidence 377888999 887 7788888888 55432 2222221100 0000 0 01 12456 899999999
Q ss_pred hhhCCcEEEEcCCC-CCChhhHHHHHHHHHHcCCEEE
Q 018231 192 TLFRPKLIVAGASA-YARLYDYERIRKVCNKQKAIML 227 (359)
Q Consensus 192 ~~~~~k~v~l~~~n-~g~~~~l~~i~~la~~~~~~vi 227 (359)
.+++.++|+ ..++ +-... -+.+.+.|++.|++++
T Consensus 63 ~~~~i~~vI-DATHPfA~~i-s~na~~a~~~~~ipyl 97 (249)
T PF02571_consen 63 RENGIDAVI-DATHPFAAEI-SQNAIEACRELGIPYL 97 (249)
T ss_pred HhCCCcEEE-ECCCchHHHH-HHHHHHHHhhcCcceE
Confidence 886777654 5444 33211 2345677888777544
No 420
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=39.52 E-value=1.4e+02 Score=23.88 Aligned_cols=49 Identities=10% Similarity=0.118 Sum_probs=34.8
Q ss_pred CCHHHHHHHhhhhCCcEEEEcCCCCCChhhHHHHHHHHHHcCC---EEEEec
Q 018231 182 IDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKA---IMLADM 230 (359)
Q Consensus 182 ~d~e~l~~~i~~~~~k~v~l~~~n~g~~~~l~~i~~la~~~~~---~vivD~ 230 (359)
..++++.++..++++.+|.++.-++.....++++.+.+++.|+ .+++=+
T Consensus 37 v~~e~~v~aa~~~~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~vivGG 88 (128)
T cd02072 37 SPQEEFIDAAIETDADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLYVGG 88 (128)
T ss_pred CCHHHHHHHHHHcCCCEEEEeccccCCHHHHHHHHHHHHHCCCCCCeEEEEC
Confidence 3567777766666899888876666677778888888888754 455433
No 421
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=39.31 E-value=82 Score=27.40 Aligned_cols=70 Identities=16% Similarity=0.125 Sum_probs=45.7
Q ss_pred CCHHHHHHHhhhhCCcEEEEcCCCCCChh-hHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEeCCC
Q 018231 182 IDYDQLEKSATLFRPKLIVAGASAYARLY-DYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTH 257 (359)
Q Consensus 182 ~d~e~l~~~i~~~~~k~v~l~~~n~g~~~-~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~ 257 (359)
+.++++++.... ...+|.+..+--.+.. +++++.+-.|.+|.+++.|++..-.... ..+.+ +|++.+..+
T Consensus 86 ptlkeVd~L~~~-Ga~IIA~DaT~R~RP~~~~~~~i~~~k~~~~l~MAD~St~ee~l~--a~~~G---~D~IGTTLs 156 (229)
T COG3010 86 PTLKEVDALAEA-GADIIAFDATDRPRPDGDLEELIARIKYPGQLAMADCSTFEEGLN--AHKLG---FDIIGTTLS 156 (229)
T ss_pred ccHHHHHHHHHC-CCcEEEeecccCCCCcchHHHHHHHhhcCCcEEEeccCCHHHHHH--HHHcC---CcEEecccc
Confidence 356777776665 7778877644433333 8888888888889999999874322211 12333 899887644
No 422
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=39.18 E-value=78 Score=29.93 Aligned_cols=49 Identities=6% Similarity=-0.032 Sum_probs=38.4
Q ss_pred CCCCHHHHHHHhhhhCCcEEEEcCCCCCC-hhhHHHHHHHHHHcCCEEEEe
Q 018231 180 GYIDYDQLEKSATLFRPKLIVAGASAYAR-LYDYERIRKVCNKQKAIMLAD 229 (359)
Q Consensus 180 ~~~d~e~l~~~i~~~~~k~v~l~~~n~g~-~~~l~~i~~la~~~~~~vivD 229 (359)
-.+|+....+++.. ....+=++|-|.|. ...++++++.|+++|+++=+=
T Consensus 87 IHFd~~lAl~a~~~-G~~~iRINPGNig~~~~~v~~vv~~ak~~~ipIRIG 136 (360)
T PRK00366 87 IHFDYRLALAAAEA-GADALRINPGNIGKRDERVREVVEAAKDYGIPIRIG 136 (360)
T ss_pred cCCCHHHHHHHHHh-CCCEEEECCCCCCchHHHHHHHHHHHHHCCCCEEEe
Confidence 44566666666665 67888899999987 778999999999999887664
No 423
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=39.18 E-value=92 Score=27.99 Aligned_cols=50 Identities=8% Similarity=0.003 Sum_probs=40.9
Q ss_pred CCCCHHHHHHHhhhhCCcEEEEcCCCCCChhhHHHHHHHHHHcCCEEEEe
Q 018231 180 GYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLAD 229 (359)
Q Consensus 180 ~~~d~e~l~~~i~~~~~k~v~l~~~n~g~~~~l~~i~~la~~~~~~vivD 229 (359)
...+++++++.+......++.+.++..|.+.+..+++++|+++|+.++.-
T Consensus 188 ~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~~~~~A~~~gi~~~~~ 237 (265)
T cd03315 188 SAFTPHDAFRELALGAADAVNIKTAKTGGLTKAQRVLAVAEALGLPVMVG 237 (265)
T ss_pred CCCCHHHHHHHHHhCCCCEEEEecccccCHHHHHHHHHHHHHcCCcEEec
Confidence 35578888888876457777777888899999999999999999987764
No 424
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=38.76 E-value=1.3e+02 Score=23.48 Aligned_cols=49 Identities=4% Similarity=0.024 Sum_probs=33.8
Q ss_pred CCHHHHHHHhhhhCCcEEEEcCCCCCChhhHHHHHHHHHHc---CCEEEEec
Q 018231 182 IDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQ---KAIMLADM 230 (359)
Q Consensus 182 ~d~e~l~~~i~~~~~k~v~l~~~n~g~~~~l~~i~~la~~~---~~~vivD~ 230 (359)
..++++.+.+.+.++.+|.++..+......++++.+..++. ++.+++=+
T Consensus 37 vp~e~~~~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG 88 (122)
T cd02071 37 QTPEEIVEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGG 88 (122)
T ss_pred CCHHHHHHHHHHcCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEEC
Confidence 45677777776668999999866655555678888777776 45555543
No 425
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=38.17 E-value=72 Score=30.28 Aligned_cols=57 Identities=18% Similarity=0.194 Sum_probs=37.7
Q ss_pred CCCHHHHHHHhh----hhCCcEEEEc-C----C-CCC-ChhhHHHHHHHHHHcCCEEEEecccccccc
Q 018231 181 YIDYDQLEKSAT----LFRPKLIVAG-A----S-AYA-RLYDYERIRKVCNKQKAIMLADMAHISGLV 237 (359)
Q Consensus 181 ~~d~e~l~~~i~----~~~~k~v~l~-~----~-n~g-~~~~l~~i~~la~~~~~~vivD~a~~~g~~ 237 (359)
..+++++..++. ..+.+++++. . . .++ ...++..|..+-+..+++||+|.+|+.|..
T Consensus 218 ~~t~ee~~~A~e~i~~~Gn~~viL~erG~rtf~s~y~~~~~dl~ai~~lk~~~~lPVi~DpsH~~G~s 285 (352)
T PRK13396 218 AATIDEWLMAAEYILAAGNPNVILCERGIRTFDRQYTRNTLDLSVIPVLRSLTHLPIMIDPSHGTGKS 285 (352)
T ss_pred CCCHHHHHHHHHHHHHcCCCeEEEEecCCccCcCCCCCCCcCHHHHHHHHHhhCCCEEECCcccCCcH
Confidence 447777765543 2244566552 1 1 233 456788888887777999999999988644
No 426
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=37.20 E-value=1e+02 Score=30.16 Aligned_cols=45 Identities=9% Similarity=0.053 Sum_probs=32.4
Q ss_pred CHHHHHHHhhhhCCcEEEEcCCCCCChhhHHHHHHHHHHcCCEEE
Q 018231 183 DYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIML 227 (359)
Q Consensus 183 d~e~l~~~i~~~~~k~v~l~~~n~g~~~~l~~i~~la~~~~~~vi 227 (359)
+++++++.+...-..++.+-++..|.+.+..+++++|+++|+.++
T Consensus 317 ~~~~~~~~i~~~a~d~v~ik~~~iGGItea~~ia~lA~~~Gi~~v 361 (425)
T TIGR01060 317 NTEILREGIEMGVANSILIKPNQIGTLTETLDAVELAKKAGYTAV 361 (425)
T ss_pred CHHHHHHHHHhCCCCEEEecccccCCHHHHHHHHHHHHHcCCcEE
Confidence 466677666653345555556668888888899999999998644
No 427
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=36.95 E-value=1.7e+02 Score=23.55 Aligned_cols=41 Identities=12% Similarity=0.114 Sum_probs=30.8
Q ss_pred CCHHHHHHHhhhhCCcEEEEcCCCCCChhhHHHHHHHHHHc
Q 018231 182 IDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQ 222 (359)
Q Consensus 182 ~d~e~l~~~i~~~~~k~v~l~~~n~g~~~~l~~i~~la~~~ 222 (359)
+.++++.+.+.+.++++|.++..++.....++++.+.+++.
T Consensus 41 vp~e~i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~L~~~ 81 (137)
T PRK02261 41 TSQEEFIDAAIETDADAILVSSLYGHGEIDCRGLREKCIEA 81 (137)
T ss_pred CCHHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHHHHHhc
Confidence 46788888777778999998766655666677777777776
No 428
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=36.32 E-value=87 Score=28.98 Aligned_cols=50 Identities=10% Similarity=-0.075 Sum_probs=39.7
Q ss_pred CCCCHHHHHHHhhhhCCcEEEEcCCCCCChhhHHHHHHHHHHcCCEEEEe
Q 018231 180 GYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLAD 229 (359)
Q Consensus 180 ~~~d~e~l~~~i~~~~~k~v~l~~~n~g~~~~l~~i~~la~~~~~~vivD 229 (359)
...+++++++.+......++.+.++..|.+.+..+++++|+++|+.++.-
T Consensus 236 ~~~~~~~~~~~~~~~~~d~v~~~~~~~GGi~~~~~~~~~a~~~gi~~~~~ 285 (316)
T cd03319 236 SCFSAADAARLAGGGAYDGINIKLMKTGGLTEALRIADLARAAGLKVMVG 285 (316)
T ss_pred CCCCHHHHHHHHhcCCCCEEEEeccccCCHHHHHHHHHHHHHcCCCEEEE
Confidence 34577888888876456677777777888989999999999999987764
No 429
>PLN00196 alpha-amylase; Provisional
Probab=36.17 E-value=40 Score=32.96 Aligned_cols=28 Identities=14% Similarity=0.252 Sum_probs=24.3
Q ss_pred CCCCChhhHHHHHHHHHHcCCEEEEecc
Q 018231 204 SAYARLYDYERIRKVCNKQKAIMLADMA 231 (359)
Q Consensus 204 ~n~g~~~~l~~i~~la~~~~~~vivD~a 231 (359)
+.+|+..+++++++.||++|+-||.|.+
T Consensus 86 ~~fGt~~elk~Lv~~aH~~GIkVilDvV 113 (428)
T PLN00196 86 SKYGNEAQLKSLIEAFHGKGVQVIADIV 113 (428)
T ss_pred ccCCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 3467777899999999999999999987
No 430
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=35.99 E-value=95 Score=27.17 Aligned_cols=43 Identities=19% Similarity=0.372 Sum_probs=30.6
Q ss_pred HHHHHhhhhCCcEEEEcCCCCC----ChhhHHHHHHHHHHcCC-EEEEe
Q 018231 186 QLEKSATLFRPKLIVAGASAYA----RLYDYERIRKVCNKQKA-IMLAD 229 (359)
Q Consensus 186 ~l~~~i~~~~~k~v~l~~~n~g----~~~~l~~i~~la~~~~~-~vivD 229 (359)
++.+++.. +|+.+++..+-.| .+.+++.|....++.|+ ++|.|
T Consensus 149 EIARaLa~-~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITD 196 (243)
T COG1137 149 EIARALAA-NPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITD 196 (243)
T ss_pred HHHHHHhc-CCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEcc
Confidence 35566665 7999999844434 55678888888888887 56777
No 431
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=35.97 E-value=68 Score=24.54 Aligned_cols=57 Identities=9% Similarity=0.049 Sum_probs=34.6
Q ss_pred cEEEEcCCCCCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEeCCC
Q 018231 197 KLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTH 257 (359)
Q Consensus 197 k~v~l~~~n~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~ 257 (359)
+++++|.+..++-.=.+.+.++|+++|+-+-++++. .+-......... +|+++.+++
T Consensus 3 kILlvCg~G~STSlla~k~k~~~~e~gi~~~i~a~~-~~e~~~~~~~~~---~DvIll~PQ 59 (104)
T PRK09590 3 KALIICAAGMSSSMMAKKTTEYLKEQGKDIEVDAIT-ATEGEKAIAAAE---YDLYLVSPQ 59 (104)
T ss_pred EEEEECCCchHHHHHHHHHHHHHHHCCCceEEEEec-HHHHHHhhccCC---CCEEEEChH
Confidence 456667544333345778899999999988887663 222221111112 788888865
No 432
>TIGR00629 uvde UV damage endonuclease UvdE. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=35.88 E-value=38 Score=31.49 Aligned_cols=33 Identities=15% Similarity=0.190 Sum_probs=27.8
Q ss_pred EEcCCCCCChhhHHHHHHHHHHcCCEEEEeccc
Q 018231 200 VAGASAYARLYDYERIRKVCNKQKAIMLADMAH 232 (359)
Q Consensus 200 ~l~~~n~g~~~~l~~i~~la~~~~~~vivD~a~ 232 (359)
.+++-|.|....++++..+|++.+++++.|..|
T Consensus 189 rL~lEnd~k~~sl~evL~lc~e~~iP~v~D~hH 221 (312)
T TIGR00629 189 RLVLENDDVTWTVEDLLPVCEELNIPFVLDFHH 221 (312)
T ss_pred cEEeccCCCcCCHHHHHHHHHhcCCCEEEEhHH
Confidence 345566777788999999999999999999776
No 433
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=35.65 E-value=2.7e+02 Score=25.09 Aligned_cols=92 Identities=17% Similarity=0.208 Sum_probs=50.3
Q ss_pred eEEECCChH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhh
Q 018231 115 NVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL 193 (359)
Q Consensus 115 ~v~~tsG~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~ 193 (359)
.|++..|++ +.. +...+.+.|..|+...-+-.+. . ...-.| ...+ . .+.+|.+.+.+.+.+
T Consensus 2 ~ILvlGGT~egr~-la~~L~~~g~~v~~s~~t~~~~--~-------~~~~~g--~~~v--~----~g~l~~~~l~~~l~~ 63 (256)
T TIGR00715 2 TVLLMGGTVDSRA-IAKGLIAQGIEILVTVTTSEGK--H-------LYPIHQ--ALTV--H----TGALDPQELREFLKR 63 (256)
T ss_pred eEEEEechHHHHH-HHHHHHhCCCeEEEEEccCCcc--c-------cccccC--CceE--E----ECCCCHHHHHHHHHh
Confidence 377778877 666 6677778888777654221111 0 000011 1111 1 135688889888887
Q ss_pred hCCcEEEEcCCCCCChhhH-HHHHHHHHHcCCEE
Q 018231 194 FRPKLIVAGASAYARLYDY-ERIRKVCNKQKAIM 226 (359)
Q Consensus 194 ~~~k~v~l~~~n~g~~~~l-~~i~~la~~~~~~v 226 (359)
.++++|+=..|-+- ..+ +-+.+.|++.|+..
T Consensus 64 ~~i~~VIDAtHPfA--~~is~~a~~a~~~~~ipy 95 (256)
T TIGR00715 64 HSIDILVDATHPFA--AQITTNATAVCKELGIPY 95 (256)
T ss_pred cCCCEEEEcCCHHH--HHHHHHHHHHHHHhCCcE
Confidence 67887653333232 122 24567788777643
No 434
>TIGR03586 PseI pseudaminic acid synthase.
Probab=35.48 E-value=2.6e+02 Score=26.28 Aligned_cols=53 Identities=15% Similarity=0.276 Sum_probs=34.9
Q ss_pred CCHHHHHHHhh---h-hCCcEEEE-cCCCCC---ChhhHHHHHHHHHHcCCEE-EEeccccccc
Q 018231 182 IDYDQLEKSAT---L-FRPKLIVA-GASAYA---RLYDYERIRKVCNKQKAIM-LADMAHISGL 236 (359)
Q Consensus 182 ~d~e~l~~~i~---~-~~~k~v~l-~~~n~g---~~~~l~~i~~la~~~~~~v-ivD~a~~~g~ 236 (359)
-++++++.++. + .+.+++++ |.++|+ ...++..|..+.++++++| ++| |+.|.
T Consensus 144 ~t~~Ei~~Av~~i~~~g~~~i~LlhC~s~YP~~~~~~nL~~i~~lk~~f~~pVG~SD--Ht~G~ 205 (327)
T TIGR03586 144 ATLEEIQEAVEACREAGCKDLVLLKCTSSYPAPLEDANLRTIPDLAERFNVPVGLSD--HTLGI 205 (327)
T ss_pred CCHHHHHHHHHHHHHCCCCcEEEEecCCCCCCCcccCCHHHHHHHHHHhCCCEEeeC--CCCch
Confidence 46777766553 2 13356655 366665 3346888888888899988 888 77663
No 435
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=35.05 E-value=98 Score=22.45 Aligned_cols=45 Identities=13% Similarity=-0.027 Sum_probs=30.3
Q ss_pred HHHHHHHhhhhCCcEEEEcCCCCCChhhHHHHHHHHHHcCCEEEEec
Q 018231 184 YDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADM 230 (359)
Q Consensus 184 ~e~l~~~i~~~~~k~v~l~~~n~g~~~~l~~i~~la~~~~~~vivD~ 230 (359)
.++..+.+...+.++|++. .+.+. .-.+.+..+|++++++++.-.
T Consensus 16 ~~~v~kai~~gkaklViiA-~D~~~-~~~~~i~~~c~~~~Vp~~~~~ 60 (82)
T PRK13602 16 TKQTVKALKRGSVKEVVVA-EDADP-RLTEKVEALANEKGVPVSKVD 60 (82)
T ss_pred HHHHHHHHHcCCeeEEEEE-CCCCH-HHHHHHHHHHHHcCCCEEEEC
Confidence 3556667776577777774 33332 346788899999999876543
No 436
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=34.82 E-value=36 Score=30.57 Aligned_cols=23 Identities=17% Similarity=0.167 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHcCCEEEEecccc
Q 018231 211 DYERIRKVCNKQKAIMLADMAHI 233 (359)
Q Consensus 211 ~l~~i~~la~~~~~~vivD~a~~ 233 (359)
+.+++.++++++++-+|+|++|=
T Consensus 54 ~~~~l~~~l~~~~i~~vIDATHP 76 (249)
T PF02571_consen 54 DEEGLAEFLRENGIDAVIDATHP 76 (249)
T ss_pred CHHHHHHHHHhCCCcEEEECCCc
Confidence 78899999999999999999983
No 437
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=34.33 E-value=1.7e+02 Score=23.52 Aligned_cols=43 Identities=14% Similarity=0.163 Sum_probs=32.0
Q ss_pred CCHHHHHHHhhhhCCcEEEEcCCCCCChhhHHHHHHHHHHcCC
Q 018231 182 IDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKA 224 (359)
Q Consensus 182 ~d~e~l~~~i~~~~~k~v~l~~~n~g~~~~l~~i~~la~~~~~ 224 (359)
..++++-++..++++.+|.++.-++.....++++.+.+++.|+
T Consensus 39 v~~e~~v~aa~~~~adiVglS~l~~~~~~~~~~~~~~l~~~gl 81 (134)
T TIGR01501 39 SPQEEFIKAAIETKADAILVSSLYGHGEIDCKGLRQKCDEAGL 81 (134)
T ss_pred CCHHHHHHHHHHcCCCEEEEecccccCHHHHHHHHHHHHHCCC
Confidence 3577777776666888888875555566678889888888764
No 438
>PLN03244 alpha-amylase; Provisional
Probab=34.19 E-value=59 Score=34.30 Aligned_cols=31 Identities=19% Similarity=0.369 Sum_probs=27.3
Q ss_pred CCCCCChhhHHHHHHHHHHcCCEEEEecccc
Q 018231 203 ASAYARLYDYERIRKVCNKQKAIMLADMAHI 233 (359)
Q Consensus 203 ~~n~g~~~~l~~i~~la~~~~~~vivD~a~~ 233 (359)
.+.+|+..+++.+++.|+++|+-||.|-++.
T Consensus 434 ssRYGTPeDLK~LVD~aH~~GI~VILDvV~N 464 (872)
T PLN03244 434 SSRYGTPDDFKRLVDEAHGLGLLVFLDIVHS 464 (872)
T ss_pred CcccCCHHHHHHHHHHHHHCCCEEEEEecCc
Confidence 3448999999999999999999999998863
No 439
>PRK00077 eno enolase; Provisional
Probab=33.99 E-value=1.3e+02 Score=29.34 Aligned_cols=46 Identities=9% Similarity=0.048 Sum_probs=33.7
Q ss_pred CHHHHHHHhhhhCCcEEEEcCCCCCChhhHHHHHHHHHHcCCEEEE
Q 018231 183 DYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLA 228 (359)
Q Consensus 183 d~e~l~~~i~~~~~k~v~l~~~n~g~~~~l~~i~~la~~~~~~viv 228 (359)
+++++++.+...-..++.+-++..|.+.+..+++++|+++|+.+++
T Consensus 316 ~~~~~~~~i~~~a~d~v~ik~~~~GGitea~~ia~lA~~~gi~~~v 361 (425)
T PRK00077 316 NTKRLKKGIEKGAANSILIKVNQIGTLTETLDAIELAKRAGYTAVV 361 (425)
T ss_pred CHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEEE
Confidence 5777777776534556665566688888888999999999986553
No 440
>PLN02672 methionine S-methyltransferase
Probab=33.89 E-value=3.1e+02 Score=30.43 Aligned_cols=49 Identities=18% Similarity=0.306 Sum_probs=35.8
Q ss_pred HHHHHHhhhhCCcEEEEc-CCC-CCChhhHHHHHHHHHHcCCEEEEecccc
Q 018231 185 DQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHI 233 (359)
Q Consensus 185 e~l~~~i~~~~~k~v~l~-~~n-~g~~~~l~~i~~la~~~~~~vivD~a~~ 233 (359)
+.+.+.++..++++|+.. ..- --+..-++.|.+.+++.|+.++.|.+-.
T Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (1082)
T PLN02672 517 DLVIELIKKLKPQVVVTGMADFEMRTSTAFEHLLNVTAEIGARLFLDISDH 567 (1082)
T ss_pred hHHHHHHHhCCCeEEEEeccchhhhhHHHHHHHHHHHHhhCcEEEEehhhh
Confidence 355666776688988876 222 2244568899999999999999998743
No 441
>TIGR00322 diphth2_R diphthamide biosynthesis protein 2-related domain. Because archaeal species are known to have the diphthamide modification to the conserved His of archaeal and eukaryotic EF-2, it may be that the lone homolog of YKL191W in M. jannaschii, A. fulgidus, and M. thermoautotrophicum is orthologous. However, each of these is considerably shorter than YKL191W and seems more closely related to the uncharacterized protein YIL103W than to YKL191W.
Probab=33.84 E-value=1.4e+02 Score=28.00 Aligned_cols=82 Identities=7% Similarity=0.002 Sum_probs=51.0
Q ss_pred CCCCCHHHHHHHhhhhCCcEEEEcCCCCCChhhHHHHHHHHHH-cCCEEEEeccccccccccCCCCCCCCCceEEEeCCC
Q 018231 179 TGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNK-QKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTH 257 (359)
Q Consensus 179 ~~~~d~e~l~~~i~~~~~k~v~l~~~n~g~~~~l~~i~~la~~-~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~ 257 (359)
++.++.+++.+.|.+.+.+-|.+..+- |-...-.+|++..++ .+.-+++.+--+.|.+-.|.....--++|+++.-+|
T Consensus 2 ~y~~e~~~~i~~I~~~~~krV~LQfPd-gLl~~a~~ia~~l~~~~~~~v~IlaD~~YGaCcvdd~~a~~~~aD~iVHyGH 80 (332)
T TIGR00322 2 NYNLETEKVIGNIRKYNAKRVGLQMPE-GLKIRALEIAEIIEQFCGVETVISGDTSFGACDIDDFTARALDVDLIVHYAH 80 (332)
T ss_pred CccccHHHHHHHHHHcCCCEEEEECCH-HHHHHHHHHHHHHHhccCceEEEEcCCceecCCCCHHHHhhcCCCEEEEcCC
Confidence 356788888888887678888888443 444455566666665 344444444334566554321111114999999999
Q ss_pred CcCC
Q 018231 258 KSLR 261 (359)
Q Consensus 258 K~l~ 261 (359)
-++.
T Consensus 81 scl~ 84 (332)
T TIGR00322 81 TPLV 84 (332)
T ss_pred CCCC
Confidence 9885
No 442
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=33.32 E-value=3.2e+02 Score=23.65 Aligned_cols=89 Identities=3% Similarity=-0.008 Sum_probs=48.5
Q ss_pred HHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhC----CcEEEEcC
Q 018231 128 VYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFR----PKLIVAGA 203 (359)
Q Consensus 128 ~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~----~k~v~l~~ 203 (359)
.....-..|-+|++..+....-++.... ....|.....+.++ +..++-+.+...+ +..|++..
T Consensus 24 r~~~~~~~g~~v~vfkp~iD~R~~~~~V-----~Sr~G~~~~A~~i~--------~~~~i~~~i~~~~~~~~~~~v~IDE 90 (201)
T COG1435 24 RARRYKEAGMKVLVFKPAIDTRYGVGKV-----SSRIGLSSEAVVIP--------SDTDIFDEIAALHEKPPVDCVLIDE 90 (201)
T ss_pred HHHHHHHcCCeEEEEeccccccccccee-----eeccCCcccceecC--------ChHHHHHHHHhcccCCCcCEEEEeh
Confidence 4444556788888877555444333221 11223222222211 2233333343211 56888876
Q ss_pred CCCCChhhHHHHHHHHHHcCCEEEEe
Q 018231 204 SAYARLYDYERIRKVCNKQKAIMLAD 229 (359)
Q Consensus 204 ~n~g~~~~l~~i~~la~~~~~~vivD 229 (359)
..+-...-+..+.+++.++|+.|++=
T Consensus 91 aQF~~~~~v~~l~~lad~lgi~Vi~~ 116 (201)
T COG1435 91 AQFFDEELVYVLNELADRLGIPVICY 116 (201)
T ss_pred hHhCCHHHHHHHHHHHhhcCCEEEEe
Confidence 66433445778889999999999974
No 443
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=33.32 E-value=72 Score=26.19 Aligned_cols=42 Identities=19% Similarity=0.372 Sum_probs=26.1
Q ss_pred CCHHHHHHHhhhhCCcEEEEcCCCCCChhhHHHHHHHHHHcC
Q 018231 182 IDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQK 223 (359)
Q Consensus 182 ~d~e~l~~~i~~~~~k~v~l~~~n~g~~~~l~~i~~la~~~~ 223 (359)
-|.+.|.+.+.+++|.+|.++..+.....-.+.|.++.+++.
T Consensus 50 ~~~~~l~~~i~~~kP~vI~v~g~~~~s~~l~~~v~~~v~~~~ 91 (150)
T PF14639_consen 50 EDMERLKKFIEKHKPDVIAVGGNSRESRKLYDDVRDIVEELD 91 (150)
T ss_dssp HHHHHHHHHHHHH--SEEEE--SSTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCChhHHHHHHHHHHHHHHhh
Confidence 456777888888899999997544444444566777777654
No 444
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=32.98 E-value=2.3e+02 Score=21.88 Aligned_cols=94 Identities=10% Similarity=0.028 Sum_probs=45.0
Q ss_pred HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceee-eeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEEEc
Q 018231 124 SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISA-VSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG 202 (359)
Q Consensus 124 a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~l~ 202 (359)
+.. ++..+.+.|-+|.-..+.+....+ ...|..-... .......+-.+.+ .-++.+++.... .++.+++.
T Consensus 16 g~~-v~~~l~~~G~~v~~Vnp~~~~i~G--~~~y~sl~e~p~~iDlavv~~~~~-----~~~~~v~~~~~~-g~~~v~~~ 86 (116)
T PF13380_consen 16 GYR-VLRNLKAAGYEVYPVNPKGGEILG--IKCYPSLAEIPEPIDLAVVCVPPD-----KVPEIVDEAAAL-GVKAVWLQ 86 (116)
T ss_dssp HHH-HHHHHHHTT-EEEEESTTCSEETT--EE-BSSGGGCSST-SEEEE-S-HH-----HHHHHHHHHHHH-T-SEEEE-
T ss_pred HHH-HHHHHHhCCCEEEEECCCceEECc--EEeeccccCCCCCCCEEEEEcCHH-----HHHHHHHHHHHc-CCCEEEEE
Confidence 555 777777777667766655544422 1111111000 1111211211110 012444554444 78888887
Q ss_pred CCCCCChhhHHHHHHHHHHcCCEEEEecc
Q 018231 203 ASAYARLYDYERIRKVCNKQKAIMLADMA 231 (359)
Q Consensus 203 ~~n~g~~~~l~~i~~la~~~~~~vivD~a 231 (359)
+. ..-+++.++|+++|+.++-..+
T Consensus 87 ~g-----~~~~~~~~~a~~~gi~vigp~C 110 (116)
T PF13380_consen 87 PG-----AESEELIEAAREAGIRVIGPNC 110 (116)
T ss_dssp TT-----S--HHHHHHHHHTT-EEEESS-
T ss_pred cc-----hHHHHHHHHHHHcCCEEEeCCc
Confidence 55 3566899999999999886654
No 445
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=32.98 E-value=93 Score=29.20 Aligned_cols=39 Identities=3% Similarity=-0.106 Sum_probs=31.2
Q ss_pred HhhhhCCcEEEEcCCCCCChhhHHHHHHHHHHcCCEEEEe
Q 018231 190 SATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLAD 229 (359)
Q Consensus 190 ~i~~~~~k~v~l~~~n~g~~~~l~~i~~la~~~~~~vivD 229 (359)
++.. ....+=++|-|.|...-++++++.|+++|+++=+=
T Consensus 89 a~~~-g~dkiRINPGNig~~e~v~~vv~~ak~~~ipIRIG 127 (346)
T TIGR00612 89 AMAK-GVAKVRINPGNIGFRERVRDVVEKARDHGKAMRIG 127 (346)
T ss_pred HHHh-ccCeEEECCCCCCCHHHHHHHHHHHHHCCCCEEEe
Confidence 3443 56678889999998888999999999999876653
No 446
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=32.91 E-value=1e+02 Score=23.01 Aligned_cols=55 Identities=15% Similarity=0.112 Sum_probs=33.7
Q ss_pred cEEEEcCCCCCChhhHHHHHHHHHHcCCEEEEeccccccccccCCCCCCCCCceEEEeCCC
Q 018231 197 KLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTH 257 (359)
Q Consensus 197 k~v~l~~~n~g~~~~l~~i~~la~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~ 257 (359)
+++++|.+..++-.=.+.+.+.++++|+.+-++.+... -... ... ..|+++.+++
T Consensus 1 kIl~~Cg~G~sTS~~~~ki~~~~~~~~~~~~v~~~~~~-~~~~--~~~---~~Diil~~Pq 55 (96)
T cd05564 1 KILLVCSAGMSTSILVKKMKKAAEKRGIDAEIEAVPES-ELEE--YID---DADVVLLGPQ 55 (96)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHHCCCceEEEEecHH-HHHH--hcC---CCCEEEEChh
Confidence 35666754433222377999999999998877766422 2211 111 2788888876
No 447
>PLN00191 enolase
Probab=32.70 E-value=1.4e+02 Score=29.54 Aligned_cols=49 Identities=4% Similarity=-0.037 Sum_probs=36.2
Q ss_pred CCCHHHHHHHhhhhCCcEEEEcCCCCCChhhHHHHHHHHHHcCCEEEEe
Q 018231 181 YIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLAD 229 (359)
Q Consensus 181 ~~d~e~l~~~i~~~~~k~v~l~~~n~g~~~~l~~i~~la~~~~~~vivD 229 (359)
..+++++++.+...-..++.+-++..|.+.+..+++++|+++|+.+++-
T Consensus 346 vtn~~~l~~~I~~~aad~i~iKl~qiGGITea~~~a~lA~~~G~~~~is 394 (457)
T PLN00191 346 VTNPKRVAKAIQEKACNALLLKVNQIGTVTESIEAVKMSKAAGWGVMTS 394 (457)
T ss_pred cCCHHHHHHHHHhCCCCEEEecccccCCHHHHHHHHHHHHHCCCEEEeC
Confidence 3457777777766334555555666888888889999999999988763
No 448
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=32.67 E-value=2.9e+02 Score=25.33 Aligned_cols=46 Identities=15% Similarity=0.175 Sum_probs=31.9
Q ss_pred CHHHHHHHhhhhCCcEEEEc--CCCCC-Ch-h----------hHHHHHHHHHHcCCEEEE
Q 018231 183 DYDQLEKSATLFRPKLIVAG--ASAYA-RL-Y----------DYERIRKVCNKQKAIMLA 228 (359)
Q Consensus 183 d~e~l~~~i~~~~~k~v~l~--~~n~g-~~-~----------~l~~i~~la~~~~~~viv 228 (359)
|.+.+.+.+.+.+|.+|+=+ .++.. .. . -...|+++|++.|+.+|.
T Consensus 38 d~~~v~~~i~~~~PDvVIn~AAyt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga~lVh 97 (281)
T COG1091 38 DPDAVLEVIRETRPDVVINAAAYTAVDKAESEPELAFAVNATGAENLARAAAEVGARLVH 97 (281)
T ss_pred ChHHHHHHHHhhCCCEEEECccccccccccCCHHHHHHhHHHHHHHHHHHHHHhCCeEEE
Confidence 78999999988789988765 34322 11 1 134678999999987653
No 449
>KOG2865 consensus NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit [Energy production and conversion]
Probab=32.37 E-value=2.8e+02 Score=25.75 Aligned_cols=98 Identities=11% Similarity=0.099 Sum_probs=52.2
Q ss_pred EEECCChH--HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhh
Q 018231 116 VQSLSGSP--SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL 193 (359)
Q Consensus 116 v~~tsG~~--a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~ 193 (359)
|...-|++ .-..++.-+.+-|..|+++--....... .....|---.+++.+.+ ..|.|.+++.++.
T Consensus 63 VaTVFGAtGFlGryvvnklak~GSQviiPyR~d~~~~r--------~lkvmGdLGQvl~~~fd----~~DedSIr~vvk~ 130 (391)
T KOG2865|consen 63 VATVFGATGFLGRYVVNKLAKMGSQVIIPYRGDEYDPR--------HLKVMGDLGQVLFMKFD----LRDEDSIRAVVKH 130 (391)
T ss_pred EEEEecccccccHHHHHHHhhcCCeEEEeccCCccchh--------heeecccccceeeeccC----CCCHHHHHHHHHh
Confidence 45556777 2223788888999999987311111111 11222322233443333 3388999998875
Q ss_pred hCCcEEEEc-CCCCC-------ChhhHHHHHHHHHHcCCE
Q 018231 194 FRPKLIVAG-ASAYA-------RLYDYERIRKVCNKQKAI 225 (359)
Q Consensus 194 ~~~k~v~l~-~~n~g-------~~~~l~~i~~la~~~~~~ 225 (359)
.+..+=++. .-.|+ ...--++|+++|++.|+-
T Consensus 131 sNVVINLIGrd~eTknf~f~Dvn~~~aerlAricke~GVe 170 (391)
T KOG2865|consen 131 SNVVINLIGRDYETKNFSFEDVNVHIAERLARICKEAGVE 170 (391)
T ss_pred CcEEEEeeccccccCCcccccccchHHHHHHHHHHhhChh
Confidence 232211222 11122 112256899999999874
No 450
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=31.88 E-value=1.1e+02 Score=29.09 Aligned_cols=54 Identities=13% Similarity=0.228 Sum_probs=37.6
Q ss_pred CCHHHHHHHhh----hhCCcEEEEc--CCCCC----ChhhHHHHHHHHHHcCCEEEEecccccc
Q 018231 182 IDYDQLEKSAT----LFRPKLIVAG--ASAYA----RLYDYERIRKVCNKQKAIMLADMAHISG 235 (359)
Q Consensus 182 ~d~e~l~~~i~----~~~~k~v~l~--~~n~g----~~~~l~~i~~la~~~~~~vivD~a~~~g 235 (359)
.++++++.++. ..+.+++++. .++|+ ...++..|..+-+..+++|+.|..|+.|
T Consensus 236 ~t~~e~~~Ave~i~~~Gn~~i~L~erg~s~yp~~~~~~ldl~~i~~lk~~~~~PV~~d~~Hs~G 299 (360)
T PRK12595 236 ATIEEFIYAAEYIMSQGNGQIILCERGIRTYEKATRNTLDISAVPILKQETHLPVMVDVTHSTG 299 (360)
T ss_pred CCHHHHHHHHHHHHHCCCCCEEEECCccCCCCCCCCCCcCHHHHHHHHHHhCCCEEEeCCCCCc
Confidence 57888776553 2245676663 33333 2247888888888899999999999876
No 451
>PTZ00081 enolase; Provisional
Probab=31.69 E-value=1.5e+02 Score=29.15 Aligned_cols=48 Identities=6% Similarity=0.014 Sum_probs=34.6
Q ss_pred CCCHHHHHHHhhhhCCcEEEEcCCCCCChhhHHHHHHHHHHcCCEEEE
Q 018231 181 YIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLA 228 (359)
Q Consensus 181 ~~d~e~l~~~i~~~~~k~v~l~~~n~g~~~~l~~i~~la~~~~~~viv 228 (359)
..+++.+.+.+...-..++.+-++..|.+.+..+++++|+++|+.+++
T Consensus 334 ~tn~~~l~~~I~~~aad~i~iKvnqiGGITe~l~~a~lA~~~Gi~~ii 381 (439)
T PTZ00081 334 VTNPTRIKKAIEKKACNALLLKVNQIGTVTEAIEAAKLAQKNGWGVMV 381 (439)
T ss_pred cCCHHHHHHHHHhCCCCEEEeccccccCHHHHHHHHHHHHHcCCcEEE
Confidence 345666776666533455555566688888888999999999987776
No 452
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=31.68 E-value=2.3e+02 Score=23.27 Aligned_cols=82 Identities=13% Similarity=0.130 Sum_probs=47.6
Q ss_pred ChHHHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhhhhCCcEEE
Q 018231 121 GSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIV 200 (359)
Q Consensus 121 G~~a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~~k~v~ 200 (359)
|..+.. ++..+++.|-+|....-... . ... ..+ +..+..+. .|++.+.+++.. ...++
T Consensus 8 G~vG~~-l~~~L~~~~~~V~~~~R~~~------~-~~~----~~~--~~~~~~d~------~d~~~~~~al~~--~d~vi 65 (183)
T PF13460_consen 8 GFVGRA-LAKQLLRRGHEVTALVRSPS------K-AED----SPG--VEIIQGDL------FDPDSVKAALKG--ADAVI 65 (183)
T ss_dssp SHHHHH-HHHHHHHTTSEEEEEESSGG------G-HHH----CTT--EEEEESCT------TCHHHHHHHHTT--SSEEE
T ss_pred ChHHHH-HHHHHHHCCCEEEEEecCch------h-ccc----ccc--cccceeee------hhhhhhhhhhhh--cchhh
Confidence 333555 77888888877765431111 0 000 112 33343333 388999998874 66777
Q ss_pred Ec-CCCCCChhhHHHHHHHHHHcCC
Q 018231 201 AG-ASAYARLYDYERIRKVCNKQKA 224 (359)
Q Consensus 201 l~-~~n~g~~~~l~~i~~la~~~~~ 224 (359)
.+ ++........+.+.+.|+++|+
T Consensus 66 ~~~~~~~~~~~~~~~~~~a~~~~~~ 90 (183)
T PF13460_consen 66 HAAGPPPKDVDAAKNIIEAAKKAGV 90 (183)
T ss_dssp ECCHSTTTHHHHHHHHHHHHHHTTS
T ss_pred hhhhhhccccccccccccccccccc
Confidence 66 3333334456788888988887
No 453
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=31.15 E-value=1.5e+02 Score=21.52 Aligned_cols=45 Identities=11% Similarity=0.057 Sum_probs=30.8
Q ss_pred HHHHHHhhhhCCcEEEEcCCCCCChhhHHHHHHHHHHcCCEEEEecc
Q 018231 185 DQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMA 231 (359)
Q Consensus 185 e~l~~~i~~~~~k~v~l~~~n~g~~~~l~~i~~la~~~~~~vivD~a 231 (359)
+...+.+...+.++|++. .+.+ ..-.+.+.++|+.++++++....
T Consensus 14 ~~vlkaIk~gkakLViiA-~Da~-~~~~k~i~~~c~~~~Vpv~~~~t 58 (82)
T PRK13601 14 KQTLKAITNCNVLQVYIA-KDAE-EHVTKKIKELCEEKSIKIVYIDT 58 (82)
T ss_pred HHHHHHHHcCCeeEEEEe-CCCC-HHHHHHHHHHHHhCCCCEEEeCC
Confidence 455566665577888774 3333 34477899999999999865543
No 454
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=30.82 E-value=1.5e+02 Score=28.71 Aligned_cols=47 Identities=11% Similarity=0.080 Sum_probs=34.1
Q ss_pred CCHHHHHHHhhhhCCcEEEEcCCCCCChhhHHHHHHHHHHcCCEEEE
Q 018231 182 IDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLA 228 (359)
Q Consensus 182 ~d~e~l~~~i~~~~~k~v~l~~~n~g~~~~l~~i~~la~~~~~~viv 228 (359)
.+++++++.+...-..++.+.++..|.+.+..+++++|+++|+.+++
T Consensus 315 ~~~~~~~~~i~~~a~d~v~ik~~~iGGite~~~ia~lA~~~G~~~~~ 361 (408)
T cd03313 315 TNPERLKKGIEKKAANALLIKVNQIGTLTETIEAIKLAKKNGYGVVV 361 (408)
T ss_pred CCHHHHHHHHHhCCCCEEEEcccccCCHHHHHHHHHHHHHcCCeEEc
Confidence 35777777776533455555566678888888999999999987763
No 455
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=30.66 E-value=88 Score=25.03 Aligned_cols=49 Identities=14% Similarity=0.089 Sum_probs=29.0
Q ss_pred CHHHHHHHhhhhCCcEEEEc-CCC------CCC-hh----hHHHHHHHHHHcCCEEEEeccc
Q 018231 183 DYDQLEKSATLFRPKLIVAG-ASA------YAR-LY----DYERIRKVCNKQKAIMLADMAH 232 (359)
Q Consensus 183 d~e~l~~~i~~~~~k~v~l~-~~n------~g~-~~----~l~~i~~la~~~~~~vivD~a~ 232 (359)
|++.+.+.+.+.+++.+++. |.| +|. .. -.+.|..+|+++|. =+.|-++
T Consensus 37 Dl~l~L~~~k~~g~~~lfVi~PvNg~wydytG~~~~~r~~~y~kI~~~~~~~gf-~v~D~s~ 97 (130)
T PF04914_consen 37 DLQLLLDVCKELGIDVLFVIQPVNGKWYDYTGLSKEMRQEYYKKIKYQLKSQGF-NVADFSD 97 (130)
T ss_dssp HHHHHHHHHHHTT-EEEEEE----HHHHHHTT--HHHHHHHHHHHHHHHHTTT---EEE-TT
T ss_pred HHHHHHHHHHHcCCceEEEecCCcHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC-EEEeccc
Confidence 56666677777788887776 666 341 11 25688899999998 7888764
No 456
>PLN02361 alpha-amylase
Probab=30.49 E-value=58 Score=31.55 Aligned_cols=28 Identities=18% Similarity=0.196 Sum_probs=24.4
Q ss_pred CCCCChhhHHHHHHHHHHcCCEEEEecc
Q 018231 204 SAYARLYDYERIRKVCNKQKAIMLADMA 231 (359)
Q Consensus 204 ~n~g~~~~l~~i~~la~~~~~~vivD~a 231 (359)
+.+|+..+++++++.||++|+-+|.|.+
T Consensus 70 ~~~Gt~~el~~li~~~h~~gi~vi~D~V 97 (401)
T PLN02361 70 SAYGSEHLLKSLLRKMKQYNVRAMADIV 97 (401)
T ss_pred cccCCHHHHHHHHHHHHHcCCEEEEEEc
Confidence 3367778899999999999999999987
No 457
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=30.39 E-value=45 Score=29.96 Aligned_cols=90 Identities=14% Similarity=0.093 Sum_probs=56.1
Q ss_pred eEEECCChH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCC-CHHHHHHHhh
Q 018231 115 NVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYI-DYDQLEKSAT 192 (359)
Q Consensus 115 ~v~~tsG~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~-d~e~l~~~i~ 192 (359)
.|.+-.|++ +-. +...|.+.|-.|+++.-+..+... ..+ ++ + -.+.+ |.+.+++.+.
T Consensus 4 ~IlvlgGT~egr~-la~~L~~~g~~v~~Svat~~g~~~-----------~~~-----~~--v--~~G~l~~~~~l~~~l~ 62 (248)
T PRK08057 4 RILLLGGTSEARA-LARALAAAGVDIVLSLAGRTGGPA-----------DLP-----GP--V--RVGGFGGAEGLAAYLR 62 (248)
T ss_pred eEEEEechHHHHH-HHHHHHhCCCeEEEEEccCCCCcc-----------cCC-----ce--E--EECCCCCHHHHHHHHH
Confidence 477888888 777 667777778777765422211100 011 11 1 12556 8999999998
Q ss_pred hhCCcEEEEcCCCCCChhhHH-HHHHHHHHcCCEEE
Q 018231 193 LFRPKLIVAGASAYARLYDYE-RIRKVCNKQKAIML 227 (359)
Q Consensus 193 ~~~~k~v~l~~~n~g~~~~l~-~i~~la~~~~~~vi 227 (359)
+++.++| +..++ +.-..+. .+.+.|++.|++.+
T Consensus 63 ~~~i~~V-IDATH-PfA~~is~~a~~ac~~~~ipyi 96 (248)
T PRK08057 63 EEGIDLV-IDATH-PYAAQISANAAAACRALGIPYL 96 (248)
T ss_pred HCCCCEE-EECCC-ccHHHHHHHHHHHHHHhCCcEE
Confidence 8677765 45554 5544444 46788999988655
No 458
>PF02639 DUF188: Uncharacterized BCR, YaiI/YqxD family COG1671; InterPro: IPR003791 This entry describes proteins of unknown function.
Probab=29.57 E-value=1.2e+02 Score=24.32 Aligned_cols=62 Identities=16% Similarity=0.126 Sum_probs=37.2
Q ss_pred eeEEECCChH-HHHHHHHhhcCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhh
Q 018231 114 VNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSAT 192 (359)
Q Consensus 114 ~~v~~tsG~~-a~~~~~~al~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~ 192 (359)
..|++.+|.. +-. .+...+++||-|++.+ .+. +..+....... +++.+..++.+.+...+.
T Consensus 30 ~~i~Vd~g~DaaD~-~I~~~~~~gDiVITqD--------igL-----A~~~l~Kga~v----l~~rG~~yt~~nI~~~L~ 91 (130)
T PF02639_consen 30 EMIVVDSGFDAADF-YIVNHAKPGDIVITQD--------IGL-----ASLLLAKGAYV----LNPRGKEYTKENIDELLA 91 (130)
T ss_pred EEEEECCCCChHHH-HHHHcCCCCCEEEECC--------HHH-----HHHHHHCCCEE----ECCCCCCCCHHHHHHHHH
Confidence 3477777877 555 6677789999999887 221 11122222222 343455778888777664
Q ss_pred h
Q 018231 193 L 193 (359)
Q Consensus 193 ~ 193 (359)
.
T Consensus 92 ~ 92 (130)
T PF02639_consen 92 M 92 (130)
T ss_pred H
Confidence 3
No 459
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=29.53 E-value=2.1e+02 Score=22.83 Aligned_cols=47 Identities=13% Similarity=0.094 Sum_probs=31.9
Q ss_pred CCHHHHHHHhhhhCCcEEEEcCCCCCChhhHHHHHHHHHHcC---CEEEE
Q 018231 182 IDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQK---AIMLA 228 (359)
Q Consensus 182 ~d~e~l~~~i~~~~~k~v~l~~~n~g~~~~l~~i~~la~~~~---~~viv 228 (359)
.+++++.+...+.++.+|.+|...+.....++++.+..++.+ +.+++
T Consensus 40 ~s~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~viv 89 (132)
T TIGR00640 40 QTPEEIARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVV 89 (132)
T ss_pred CCHHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEE
Confidence 356666555555589999988666566666888888777764 34444
No 460
>COG2877 KdsA 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase [Cell envelope biogenesis, outer membrane]
Probab=29.46 E-value=1.1e+02 Score=27.24 Aligned_cols=41 Identities=15% Similarity=0.169 Sum_probs=26.7
Q ss_pred CCcEEEEc-CCCCCChhhHHHHH--HHHHHcCCEEEEecccccc
Q 018231 195 RPKLIVAG-ASAYARLYDYERIR--KVCNKQKAIMLADMAHISG 235 (359)
Q Consensus 195 ~~k~v~l~-~~n~g~~~~l~~i~--~la~~~~~~vivD~a~~~g 235 (359)
+.+++++. .+++|.-.=+-++. .+.++.+.+||-|+.|++-
T Consensus 159 n~~v~lcERG~sFGYnnLV~DMrsl~iM~~~~~PViFDaTHSvQ 202 (279)
T COG2877 159 NNKVILCERGASFGYNNLVVDMRSLPIMKEFGAPVIFDATHSVQ 202 (279)
T ss_pred CCcEEEEeccCccCcchhHHHhhhhHHHHHcCCCeEEeccccee
Confidence 45665554 67777433233332 3568899999999999753
No 461
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=29.37 E-value=1.3e+02 Score=26.99 Aligned_cols=56 Identities=13% Similarity=0.255 Sum_probs=37.6
Q ss_pred CCCHHHHHHHhh----hhCCcEEEEc--CCCCC----ChhhHHHHHHHHHHcCCEEEEeccccccc
Q 018231 181 YIDYDQLEKSAT----LFRPKLIVAG--ASAYA----RLYDYERIRKVCNKQKAIMLADMAHISGL 236 (359)
Q Consensus 181 ~~d~e~l~~~i~----~~~~k~v~l~--~~n~g----~~~~l~~i~~la~~~~~~vivD~a~~~g~ 236 (359)
..++++++.++. ..+.+++++. .+.|+ ...++..|..+.+..+++|++|.+|+.|.
T Consensus 132 ~~t~~e~~~A~e~i~~~Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~~~lPVivd~SHs~G~ 197 (250)
T PRK13397 132 MATIEEYLGALSYLQDTGKSNIILCERGVRGYDVETRNMLDIMAVPIIQQKTDLPIIVDVSHSTGR 197 (250)
T ss_pred CCCHHHHHHHHHHHHHcCCCeEEEEccccCCCCCccccccCHHHHHHHHHHhCCCeEECCCCCCcc
Confidence 567777766543 2234666663 22233 25578888877777899999999998764
No 462
>TIGR00789 flhB_rel flhB C-terminus-related protein. This model describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs, the members of this family form a monophyletic set.
Probab=29.22 E-value=47 Score=24.22 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=17.9
Q ss_pred HHHHHHHHHHcCCEEEEecc
Q 018231 212 YERIRKVCNKQKAIMLADMA 231 (359)
Q Consensus 212 l~~i~~la~~~~~~vivD~a 231 (359)
-++|.++|+++|++++.|..
T Consensus 29 A~~I~~~A~e~~VPi~~~~~ 48 (82)
T TIGR00789 29 AERIIEIAKKHGIPIVEDPD 48 (82)
T ss_pred HHHHHHHHHHcCCCEEeCHH
Confidence 46899999999999999965
No 463
>COG0108 RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism]
Probab=29.19 E-value=91 Score=26.94 Aligned_cols=34 Identities=3% Similarity=0.148 Sum_probs=26.9
Q ss_pred CCcEEEEcCCC-CCChhhHHHHHHHHHHcCCEEEE
Q 018231 195 RPKLIVAGASA-YARLYDYERIRKVCNKQKAIMLA 228 (359)
Q Consensus 195 ~~k~v~l~~~n-~g~~~~l~~i~~la~~~~~~viv 228 (359)
.|..|++.--| .|.....+++.++|++||+.++.
T Consensus 156 ~Pa~VicEi~~~dG~mar~~~~~~fa~~h~l~~it 190 (203)
T COG0108 156 KPAGVICEIMNDDGTMARLPELEEFAKEHGLPVIT 190 (203)
T ss_pred CCcEEEEEEeCCCccccChHHHHHHHHHcCCcEEE
Confidence 56666654444 78888899999999999998775
No 464
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=29.07 E-value=91 Score=28.21 Aligned_cols=45 Identities=20% Similarity=0.254 Sum_probs=31.9
Q ss_pred CHHHHHHHhhhhCCcEEEEcCCCCC----ChhhHHHHHHHHHHcCCEEEEec
Q 018231 183 DYDQLEKSATLFRPKLIVAGASAYA----RLYDYERIRKVCNKQKAIMLADM 230 (359)
Q Consensus 183 d~e~l~~~i~~~~~k~v~l~~~n~g----~~~~l~~i~~la~~~~~~vivD~ 230 (359)
+.+.+++.+. |..++++.|- .| ..-.+++|.+++++.++++++|+
T Consensus 91 av~~i~k~L~--RlhavVIGPG-LGRdp~~~k~i~~iley~~~~dvP~VIDa 139 (306)
T KOG3974|consen 91 AVDIIEKLLQ--RLHAVVIGPG-LGRDPAILKEIAKILEYLRGKDVPLVIDA 139 (306)
T ss_pred hHhHHHHHHh--heeEEEECCC-CCCCHHHHHHHHHHHHHHhcCCCcEEEcC
Confidence 4566666554 5777777643 34 22357788999999999999996
No 465
>PRK10785 maltodextrin glucosidase; Provisional
Probab=29.03 E-value=58 Score=33.37 Aligned_cols=49 Identities=12% Similarity=0.124 Sum_probs=35.2
Q ss_pred CHHHHHHHhh---hhCCcEEEEcC-----CC--------------CCChhhHHHHHHHHHHcCCEEEEecc
Q 018231 183 DYDQLEKSAT---LFRPKLIVAGA-----SA--------------YARLYDYERIRKVCNKQKAIMLADMA 231 (359)
Q Consensus 183 d~e~l~~~i~---~~~~k~v~l~~-----~n--------------~g~~~~l~~i~~la~~~~~~vivD~a 231 (359)
|++-|.+.|. +-...+|.++| ++ +|+..+++++++.||++|+-||.|.+
T Consensus 177 Dl~GI~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~V 247 (598)
T PRK10785 177 DLDGISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDGV 247 (598)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 6776666553 33577888752 12 13445788999999999999999987
No 466
>PRK12313 glycogen branching enzyme; Provisional
Probab=28.92 E-value=61 Score=33.48 Aligned_cols=26 Identities=8% Similarity=0.055 Sum_probs=22.6
Q ss_pred CChhhHHHHHHHHHHcCCEEEEeccc
Q 018231 207 ARLYDYERIRKVCNKQKAIMLADMAH 232 (359)
Q Consensus 207 g~~~~l~~i~~la~~~~~~vivD~a~ 232 (359)
|+..+++++++.||++|+-||.|.+.
T Consensus 217 Gt~~d~k~lv~~~H~~Gi~VilD~V~ 242 (633)
T PRK12313 217 GTPEDFMYLVDALHQNGIGVILDWVP 242 (633)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEECC
Confidence 45667999999999999999999773
No 467
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=28.56 E-value=1.5e+02 Score=22.84 Aligned_cols=47 Identities=9% Similarity=-0.053 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhhHHHHHHHHHHcCCEEE
Q 018231 180 GYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIML 227 (359)
Q Consensus 180 ~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~l~~i~~la~~~~~~vi 227 (359)
+.+++++|++.-.. ..|-|+.. |.+ .+.....+++.+.|++.|+-.+
T Consensus 13 ~Q~~~~d~~~la~~-GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~ 61 (110)
T PF04273_consen 13 GQPSPEDLAQLAAQ-GFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYV 61 (110)
T ss_dssp CS--HHHHHHHHHC-T--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEE
T ss_pred CCCCHHHHHHHHHC-CCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEE
Confidence 47788999876655 78887766 554 3333356678888999987543
No 468
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=28.49 E-value=2.1e+02 Score=24.46 Aligned_cols=50 Identities=8% Similarity=0.143 Sum_probs=37.3
Q ss_pred CCHHHHHHHhhhhCCcEEEEcCCCCCChhhHHHHHHHHHHc----CCEEEEecc
Q 018231 182 IDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQ----KAIMLADMA 231 (359)
Q Consensus 182 ~d~e~l~~~i~~~~~k~v~l~~~n~g~~~~l~~i~~la~~~----~~~vivD~a 231 (359)
+.++++.+.+.+.++.+|.++.+++.....+.++.+..++. ++.+++=+.
T Consensus 120 ~p~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~lr~~~~~~~~~i~vGG~ 173 (201)
T cd02070 120 VPPEEFVEAVKEHKPDILGLSALMTTTMGGMKEVIEALKEAGLRDKVKVMVGGA 173 (201)
T ss_pred CCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHCCCCcCCeEEEECC
Confidence 46788888887779999988866666677788888887776 356666544
No 469
>PRK09505 malS alpha-amylase; Reviewed
Probab=28.48 E-value=63 Score=33.65 Aligned_cols=25 Identities=12% Similarity=0.143 Sum_probs=22.1
Q ss_pred CChhhHHHHHHHHHHcCCEEEEecc
Q 018231 207 ARLYDYERIRKVCNKQKAIMLADMA 231 (359)
Q Consensus 207 g~~~~l~~i~~la~~~~~~vivD~a 231 (359)
|+..+++++++-||++|+.||+|.+
T Consensus 289 Gt~~dfk~Lv~~aH~~Gi~VilD~V 313 (683)
T PRK09505 289 GTEADLRTLVDEAHQRGIRILFDVV 313 (683)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 4556799999999999999999987
No 470
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=28.47 E-value=1.9e+02 Score=26.15 Aligned_cols=55 Identities=11% Similarity=0.147 Sum_probs=37.2
Q ss_pred CCCHHHHHHHhhh----hCCcEEEEc--CCCC-C---ChhhHHHHHHHHHHcCCEEEEecccccc
Q 018231 181 YIDYDQLEKSATL----FRPKLIVAG--ASAY-A---RLYDYERIRKVCNKQKAIMLADMAHISG 235 (359)
Q Consensus 181 ~~d~e~l~~~i~~----~~~k~v~l~--~~n~-g---~~~~l~~i~~la~~~~~~vivD~a~~~g 235 (359)
..++++++.++.. .+..++++. .+.+ + ...++..|..+.+..+++|+.|..|+.|
T Consensus 142 ~~t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~~~pV~~ds~Hs~G 206 (260)
T TIGR01361 142 GNTIEEWLYAAEYILSSGNGNVILCERGIRTFEKATRNTLDLSAVPVLKKETHLPIIVDPSHAAG 206 (260)
T ss_pred CCCHHHHHHHHHHHHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHhhCCCEEEcCCCCCC
Confidence 3477777765542 233555542 3344 4 3457888888888889999999999866
No 471
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=28.40 E-value=1.1e+02 Score=24.86 Aligned_cols=44 Identities=11% Similarity=0.030 Sum_probs=28.6
Q ss_pred CHHHHHHHhhhhCCcEEEEcCCCCCChhhHHHHHHHHHHcCCEEE
Q 018231 183 DYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIML 227 (359)
Q Consensus 183 d~e~l~~~i~~~~~k~v~l~~~n~g~~~~l~~i~~la~~~~~~vi 227 (359)
+++++.+.+.+++.+-|+++.+.. ....++++.+.|+++++-+.
T Consensus 129 ~~~~l~~~~~~~~id~v~ial~~~-~~~~i~~ii~~~~~~~v~v~ 172 (175)
T PF13727_consen 129 DLDDLPELVREHDIDEVIIALPWS-EEEQIKRIIEELENHGVRVR 172 (175)
T ss_dssp -GGGHHHHHHHHT--EEEE--TTS--HHHHHHHHHHHHTTT-EEE
T ss_pred CHHHHHHHHHhCCCCEEEEEcCcc-CHHHHHHHHHHHHhCCCEEE
Confidence 567888888877888888873332 24468899999999998654
No 472
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=28.37 E-value=1.8e+02 Score=25.36 Aligned_cols=50 Identities=8% Similarity=0.022 Sum_probs=37.7
Q ss_pred CCCHHHHHHHhhhhCCcEEEEcCCCCCChhhHHHHHHHHHHcCCEEEEec
Q 018231 181 YIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADM 230 (359)
Q Consensus 181 ~~d~e~l~~~i~~~~~k~v~l~~~n~g~~~~l~~i~~la~~~~~~vivD~ 230 (359)
..+++++.+.+......++.+-++..|.+.+..+++++|+++|+.+..-+
T Consensus 154 ~~~~~~~~~~~~~~~~d~~~~k~~~~GGi~~~~~i~~~a~~~gi~~~~~~ 203 (229)
T cd00308 154 VTTVDDALEALELGAVDILQIKPTRVGGLTESRRAADLAEAFGIRVMVHG 203 (229)
T ss_pred CCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCEEeecC
Confidence 44677777666653456666667778888899999999999999887754
No 473
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=28.37 E-value=2.3e+02 Score=21.72 Aligned_cols=55 Identities=13% Similarity=0.106 Sum_probs=36.7
Q ss_pred CCCHHHHHHHhhhhCCcEEEEcCCCCCChhhHHHHHHHHHHcCCEE-EEecccccccc
Q 018231 181 YIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIM-LADMAHISGLV 237 (359)
Q Consensus 181 ~~d~e~l~~~i~~~~~k~v~l~~~n~g~~~~l~~i~~la~~~~~~v-ivD~a~~~g~~ 237 (359)
.++.++|+..+.. ++.++++..-.++... -.++.+.++++|+-+ +.|-..+..++
T Consensus 39 ~l~~e~l~~l~~~-~peiliiGTG~~~~~~-~~~~~~~l~~~gi~vE~m~T~~AcrTy 94 (109)
T cd05560 39 DLTAAHFEALLAL-QPEVILLGTGERQRFP-PPALLAPLLARGIGVEVMDTQAACRTY 94 (109)
T ss_pred cCCHHHHHHHHhc-CCCEEEEecCCCCCcC-CHHHHHHHHHcCCeEEEECHHHHHHHH
Confidence 6788999988876 7888888743344333 367777888899864 44544444443
No 474
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=28.16 E-value=3.4e+02 Score=24.49 Aligned_cols=91 Identities=18% Similarity=0.251 Sum_probs=52.9
Q ss_pred eEEECCChH-HHHHHHHhh-cCCCCeeeecCCCCCcccCccccccccceeeeeeeeEEEecccCCCCCCCCHHHHHHHhh
Q 018231 115 NVQSLSGSP-SNFQVYTAL-LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSAT 192 (359)
Q Consensus 115 ~v~~tsG~~-a~~~~~~al-~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~ 192 (359)
.|.+-.|++ +.. +..-| ..+++.++.+.-++++.+. . ..+ + .. -.+..+.+.+.+.+.
T Consensus 4 ~ilvlGGT~Dar~-la~~L~~~~~~~~~ss~t~~g~~l~--~--------~~~------~--~~-~~G~l~~e~l~~~l~ 63 (257)
T COG2099 4 RILLLGGTSDARA-LAKKLAAAPVDIILSSLTGYGAKLA--E--------QIG------P--VR-VGGFLGAEGLAAFLR 63 (257)
T ss_pred eEEEEeccHHHHH-HHHHhhccCccEEEEEcccccccch--h--------ccC------C--ee-ecCcCCHHHHHHHHH
Confidence 477778888 776 55666 3456777776655554422 1 001 0 01 236678999999998
Q ss_pred hhCCcEEEEcCCC-CCChhhHHHHHHHHHHcCCEEE
Q 018231 193 LFRPKLIVAGASA-YARLYDYERIRKVCNKQKAIML 227 (359)
Q Consensus 193 ~~~~k~v~l~~~n-~g~~~~l~~i~~la~~~~~~vi 227 (359)
+.++++++ ..++ +-.... +-..++|++.|++.+
T Consensus 64 e~~i~llI-DATHPyAa~iS-~Na~~aake~gipy~ 97 (257)
T COG2099 64 EEGIDLLI-DATHPYAARIS-QNAARAAKETGIPYL 97 (257)
T ss_pred HcCCCEEE-ECCChHHHHHH-HHHHHHHHHhCCcEE
Confidence 87777654 4333 432221 234567777776554
No 475
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=27.39 E-value=67 Score=32.50 Aligned_cols=27 Identities=11% Similarity=0.107 Sum_probs=23.1
Q ss_pred CCChhhHHHHHHHHHHcCCEEEEeccc
Q 018231 206 YARLYDYERIRKVCNKQKAIMLADMAH 232 (359)
Q Consensus 206 ~g~~~~l~~i~~la~~~~~~vivD~a~ 232 (359)
+|+..+++++++.||++|+-||.|.+.
T Consensus 156 ~G~~~e~k~lV~~aH~~Gi~VilD~V~ 182 (542)
T TIGR02402 156 YGGPDDLKALVDAAHGLGLGVILDVVY 182 (542)
T ss_pred cCCHHHHHHHHHHHHHCCCEEEEEEcc
Confidence 345667999999999999999999873
No 476
>PF02261 Asp_decarbox: Aspartate decarboxylase; InterPro: IPR003190 Decarboxylation of aspartate is the major route of alanine production in bacteria, and is catalysed by the enzyme aspartate decarboxylase. The enzyme is translated as an inactive proenzyme of two chains, A and B. This family contains both chains of aspartate decarboxylase.; GO: 0004068 aspartate 1-decarboxylase activity, 0006523 alanine biosynthetic process; PDB: 1PYU_C 1AW8_A 1PYQ_B 3TM7_C 1PT1_A 1PQH_A 1PPY_B 1PT0_B 1PQF_A 1PQE_A ....
Probab=27.38 E-value=46 Score=25.94 Aligned_cols=12 Identities=17% Similarity=0.512 Sum_probs=6.9
Q ss_pred hCCcEEEEcCCC
Q 018231 194 FRPKLIVAGASA 205 (359)
Q Consensus 194 ~~~k~v~l~~~n 205 (359)
++|++++++..|
T Consensus 101 ~~P~vv~vd~~N 112 (116)
T PF02261_consen 101 HKPKVVFVDEKN 112 (116)
T ss_dssp ---EEEEEETTS
T ss_pred CCCEEEEECCCC
Confidence 478888887655
No 477
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=26.94 E-value=3.4e+02 Score=24.27 Aligned_cols=42 Identities=7% Similarity=-0.085 Sum_probs=25.5
Q ss_pred CHHHHHHHhhh----hC-CcEEEEcCCC-CCChhhHHHHHHHHHHcCC
Q 018231 183 DYDQLEKSATL----FR-PKLIVAGASA-YARLYDYERIRKVCNKQKA 224 (359)
Q Consensus 183 d~e~l~~~i~~----~~-~k~v~l~~~n-~g~~~~l~~i~~la~~~~~ 224 (359)
|.+.+.++++. .. ...++++.+. .........+.+.|++.|+
T Consensus 50 d~~~l~~a~~~~~~~~g~~d~v~~~~~~~~~~~~~~~~~i~aa~~~gv 97 (285)
T TIGR03649 50 DEDTWDNPFSSDDGMEPEISAVYLVAPPIPDLAPPMIKFIDFARSKGV 97 (285)
T ss_pred CHHHHHHHHhcccCcCCceeEEEEeCCCCCChhHHHHHHHHHHHHcCC
Confidence 77888877731 12 4556655333 2233456677888888886
No 478
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=26.71 E-value=69 Score=32.40 Aligned_cols=26 Identities=19% Similarity=0.461 Sum_probs=19.5
Q ss_pred CCChhhHHHHHHHHHHcCCEEEEecc
Q 018231 206 YARLYDYERIRKVCNKQKAIMLADMA 231 (359)
Q Consensus 206 ~g~~~~l~~i~~la~~~~~~vivD~a 231 (359)
+|+..+++++++.||++|+-||.|.+
T Consensus 71 ~Gt~~~~~~lv~~ah~~gi~vilD~v 96 (543)
T TIGR02403 71 FGTMADFEELVSEAKKRNIKIMLDMV 96 (543)
T ss_pred cCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 45566777888888888888888865
No 479
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=26.29 E-value=1.6e+02 Score=27.76 Aligned_cols=51 Identities=4% Similarity=-0.014 Sum_probs=39.4
Q ss_pred CCCCHHHHHHHhhhhCCcEEEEcCCCCCChhhHHHHHHHHHHcCCEEEEec
Q 018231 180 GYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADM 230 (359)
Q Consensus 180 ~~~d~e~l~~~i~~~~~k~v~l~~~n~g~~~~l~~i~~la~~~~~~vivD~ 230 (359)
...+++++++.+......++-+-+...|.+.+..+++++|+++|+.+++-+
T Consensus 248 ~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~i~~~a~~~g~~~~~~~ 298 (357)
T cd03316 248 NLYTRWEFRDLLEAGAVDIIQPDVTKVGGITEAKKIAALAEAHGVRVAPHG 298 (357)
T ss_pred ccccHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCeEeccC
Confidence 345788888888764456665557778888899999999999999877654
No 480
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=25.90 E-value=74 Score=32.23 Aligned_cols=26 Identities=19% Similarity=0.423 Sum_probs=22.0
Q ss_pred CCChhhHHHHHHHHHHcCCEEEEecc
Q 018231 206 YARLYDYERIRKVCNKQKAIMLADMA 231 (359)
Q Consensus 206 ~g~~~~l~~i~~la~~~~~~vivD~a 231 (359)
+|+..+++++++.||++|+.||+|.+
T Consensus 77 ~Gt~~d~~~lv~~~h~~gi~vilD~V 102 (551)
T PRK10933 77 YGTLDDFDELVAQAKSRGIRIILDMV 102 (551)
T ss_pred cCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 45667789999999999999999976
No 481
>PRK05402 glycogen branching enzyme; Provisional
Probab=25.87 E-value=71 Score=33.59 Aligned_cols=26 Identities=12% Similarity=0.216 Sum_probs=22.5
Q ss_pred CChhhHHHHHHHHHHcCCEEEEeccc
Q 018231 207 ARLYDYERIRKVCNKQKAIMLADMAH 232 (359)
Q Consensus 207 g~~~~l~~i~~la~~~~~~vivD~a~ 232 (359)
|+..+++++++.||++|+-||.|.+.
T Consensus 312 Gt~~dfk~lV~~~H~~Gi~VilD~V~ 337 (726)
T PRK05402 312 GTPDDFRYFVDACHQAGIGVILDWVP 337 (726)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEECC
Confidence 45667999999999999999999773
No 482
>KOG0630 consensus Predicted pyridoxal-dependent decarboxylase [Amino acid transport and metabolism]
Probab=25.78 E-value=2.2e+02 Score=28.37 Aligned_cols=92 Identities=17% Similarity=0.166 Sum_probs=55.8
Q ss_pred CCCCHHHHHHHhhhh----CCcEEEEc---CCCCCChhhHHHHHHHHHHcC-CEEEEeccccccccccCCCCCCCC----
Q 018231 180 GYIDYDQLEKSATLF----RPKLIVAG---ASAYARLYDYERIRKVCNKQK-AIMLADMAHISGLVAAGVIPSPFE---- 247 (359)
Q Consensus 180 ~~~d~e~l~~~i~~~----~~k~v~l~---~~n~g~~~~l~~i~~la~~~~-~~vivD~a~~~g~~~~~~~~~~~~---- 247 (359)
+.+|.-.+++.++++ ++-++++. .+-.|....+-+|.++|++|+ .|++.-+ |+..........+.+.
T Consensus 272 griDhh~feKiideDlaagkkPLilia~iGasi~GqnDmi~kildi~eahakfWLHasG-haiAALt~aepnnil~HV~e 350 (838)
T KOG0630|consen 272 GRIDHHLFEKIIDEDLAAGKKPLILIADIGASICGQNDMILKILDICEAHAKFWLHASG-HAIAALTCAEPNNILGHVEE 350 (838)
T ss_pred ccccHHHHHHHHHHHHhCCCCCeEEEEeccchhhcchHHHHHHHHHHHHhhheeEeecc-chhhheeecCcccchhHHHH
Confidence 478999999888752 44455553 333788888999999999997 6776654 3333322211111111
Q ss_pred CceEEEeCCCCcCCCCCceEEEEeC
Q 018231 248 YADVVTTTTHKSLRGPRGAMIFFRK 272 (359)
Q Consensus 248 ~~D~v~~s~~K~l~gp~gG~l~~~~ 272 (359)
..|.+.....-|++-|..-+++...
T Consensus 351 qldSMal~ialWLGiPSaPiV~LHR 375 (838)
T KOG0630|consen 351 QLDSMALNIALWLGIPSAPIVLLHR 375 (838)
T ss_pred HHhhccchhHHHhCCCCCceEEeec
Confidence 3566666666777655444444443
No 483
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=25.60 E-value=1.4e+02 Score=26.93 Aligned_cols=45 Identities=13% Similarity=0.154 Sum_probs=31.1
Q ss_pred HHHHHHHhhhhCCcEEEEcCCCCCChhhHHHHHHHHHHcCCEEEEecc
Q 018231 184 YDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMA 231 (359)
Q Consensus 184 ~e~l~~~i~~~~~k~v~l~~~n~g~~~~l~~i~~la~~~~~~vivD~a 231 (359)
.+.+++.+. +.++++++++ .+...++.++.+.+++++.++++|..
T Consensus 83 ~~~~~~~~~--~~davvig~G-l~~~~~~~~l~~~~~~~~~pvVlDa~ 127 (272)
T TIGR00196 83 VDEDEELLE--RYDVVVIGPG-LGQDPSFKKAVEEVLELDKPVVLDAD 127 (272)
T ss_pred HHHHHhhhc--cCCEEEEcCC-CCCCHHHHHHHHHHHhcCCCEEEEhH
Confidence 455555443 4678888654 34333478888889999999999964
No 484
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=25.43 E-value=1.7e+02 Score=25.54 Aligned_cols=45 Identities=13% Similarity=0.165 Sum_probs=32.7
Q ss_pred HHHHHHHhhhhCCcEEEEcCCC-CC-C-hhhHHHHHHHHHHcCCEEEEe
Q 018231 184 YDQLEKSATLFRPKLIVAGASA-YA-R-LYDYERIRKVCNKQKAIMLAD 229 (359)
Q Consensus 184 ~e~l~~~i~~~~~k~v~l~~~n-~g-~-~~~l~~i~~la~~~~~~vivD 229 (359)
++.+++++.. ..+++-+=.-+ .. . ..-.+++.++|+++++.++++
T Consensus 24 ~~~ve~al~~-Gv~~vQlR~K~~~~~~~~~~a~~~~~lc~~~~v~liIN 71 (211)
T COG0352 24 LEWVEAALKG-GVTAVQLREKDLSDEEYLALAEKLRALCQKYGVPLIIN 71 (211)
T ss_pred HHHHHHHHhC-CCeEEEEecCCCChHHHHHHHHHHHHHHHHhCCeEEec
Confidence 7889999887 67777664333 22 2 344578999999999988876
No 485
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=25.39 E-value=2.7e+02 Score=22.24 Aligned_cols=54 Identities=15% Similarity=0.113 Sum_probs=36.6
Q ss_pred CCCCHHHHHHHhhhhCCcEEEEc-CCC-CCChhh----HHHHH-HHHHHc-CCE-EEEecccc
Q 018231 180 GYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYD----YERIR-KVCNKQ-KAI-MLADMAHI 233 (359)
Q Consensus 180 ~~~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~----l~~i~-~la~~~-~~~-vivD~a~~ 233 (359)
...+++.|.+.+.+.++..+++. |.+ .|...+ +.+.+ ++.++. ++. ..+|+-.+
T Consensus 36 ~~~~~~~l~~li~~~~i~~iVvGlP~~~~G~~~~~~~~v~~f~~~L~~~~~~ipV~~~DEr~T 98 (135)
T PF03652_consen 36 REKDIEELKKLIEEYQIDGIVVGLPLNMDGSESEQARRVRKFAEELKKRFPGIPVILVDERLT 98 (135)
T ss_dssp CCCCHHHHHHHHHHCCECEEEEEEEBBCTSSC-CCHHHHHHHHHHHHHHH-TSEEEEEECSCS
T ss_pred CchHHHHHHHHHHHhCCCEEEEeCCcccCCCccHHHHHHHHHHHHHHHhcCCCcEEEECCChh
Confidence 46689999999998888999988 766 564333 33333 334444 774 77898753
No 486
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=25.20 E-value=2.8e+02 Score=23.75 Aligned_cols=50 Identities=12% Similarity=0.203 Sum_probs=38.0
Q ss_pred CCHHHHHHHhhhhCCcEEEEcCCCCCChhhHHHHHHHHHHcC----CEEEEecc
Q 018231 182 IDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQK----AIMLADMA 231 (359)
Q Consensus 182 ~d~e~l~~~i~~~~~k~v~l~~~n~g~~~~l~~i~~la~~~~----~~vivD~a 231 (359)
+.++++.+.+.+.++.+|.++.+++.....++++.+.+++.+ +.+++=+.
T Consensus 122 vp~e~~v~~~~~~~pd~v~lS~~~~~~~~~~~~~i~~l~~~~~~~~v~i~vGG~ 175 (197)
T TIGR02370 122 VPIDTVVEKVKKEKPLMLTGSALMTTTMYGQKDINDKLKEEGYRDSVKFMVGGA 175 (197)
T ss_pred CCHHHHHHHHHHcCCCEEEEccccccCHHHHHHHHHHHHHcCCCCCCEEEEECh
Confidence 467888888887799999998776666777888888888773 56666543
No 487
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=25.16 E-value=1.6e+02 Score=26.55 Aligned_cols=55 Identities=5% Similarity=0.148 Sum_probs=33.2
Q ss_pred CCCCCHHHHHHH----hhhhCCcEEEEc-CCCCC---ChhhHHHHHHHHHHcCCEEEEeccccc
Q 018231 179 TGYIDYDQLEKS----ATLFRPKLIVAG-ASAYA---RLYDYERIRKVCNKQKAIMLADMAHIS 234 (359)
Q Consensus 179 ~~~~d~e~l~~~----i~~~~~k~v~l~-~~n~g---~~~~l~~i~~la~~~~~~vivD~a~~~ 234 (359)
+....++++... ....+.+++++. ...+| ...|+..+.-+ ++.+++||+|.+|++
T Consensus 124 G~~~t~~e~l~aaeyi~~~Gn~~viLcERG~tf~y~r~~~D~~~ip~~-k~~~~PVi~DpSHsv 186 (258)
T TIGR01362 124 GQFLSPWDMKNVVEKVLSTGNKNILLCERGTSFGYNNLVVDMRSLPIM-RELGCPVIFDATHSV 186 (258)
T ss_pred CCcCCHHHHHHHHHHHHHcCCCcEEEEeCCCCcCCCCcccchhhhHHH-HhcCCCEEEeCCccc
Confidence 345566665332 333456666654 33334 24577766644 455899999999974
No 488
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=25.14 E-value=3.2e+02 Score=20.93 Aligned_cols=55 Identities=11% Similarity=0.090 Sum_probs=36.8
Q ss_pred CCCHHHHHHHhhhhC-CcEEEEcCCCCCChhhHHHHHHHHHHcCCEE-EEecccccccc
Q 018231 181 YIDYDQLEKSATLFR-PKLIVAGASAYARLYDYERIRKVCNKQKAIM-LADMAHISGLV 237 (359)
Q Consensus 181 ~~d~e~l~~~i~~~~-~k~v~l~~~n~g~~~~l~~i~~la~~~~~~v-ivD~a~~~g~~ 237 (359)
.++.++|...+.. + +.++++..-.++. .+-.++.+.++++|+-+ +.|-..+..+.
T Consensus 38 ~l~~~~l~~~~~~-~~peiliiGTG~~~~-~~~~~~~~~l~~~gI~vE~m~T~aAcrTy 94 (109)
T cd00248 38 DLDPEALLPLLAE-DRPDILLIGTGAEIA-FLPRALRAALRAAGIGVEVMSTGAACRTY 94 (109)
T ss_pred cCCHHHHHHHHhh-CCCCEEEEcCCCCCC-cCCHHHHHHHHHcCCeEEEeCcHHHHHHH
Confidence 6789999988876 5 8888887333342 34457788888999864 44544444443
No 489
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=25.03 E-value=1e+02 Score=24.39 Aligned_cols=38 Identities=18% Similarity=0.192 Sum_probs=21.3
Q ss_pred HHHHhhhhCCcEEEEcCCCCCChhhHHHHHHHHHHcCCEEEEe
Q 018231 187 LEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLAD 229 (359)
Q Consensus 187 l~~~i~~~~~k~v~l~~~n~g~~~~l~~i~~la~~~~~~vivD 229 (359)
+++.+.. ++-+++++-.. .+.+++.++|++++++++.=
T Consensus 74 l~~l~~~-~~P~iIvt~~~----~~p~~l~e~a~~~~ipll~t 111 (127)
T PF02603_consen 74 LEKLFSY-NPPCIIVTRGL----EPPPELIELAEKYNIPLLRT 111 (127)
T ss_dssp HHHHCTT-T-S-EEEETTT-------HHHHHHHHHCT--EEEE
T ss_pred HHHHhCC-CCCEEEEECcC----CCCHHHHHHHHHhCCcEEEc
Confidence 4455554 67677775332 46778999999999987653
No 490
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=25.01 E-value=2.5e+02 Score=22.79 Aligned_cols=53 Identities=15% Similarity=0.162 Sum_probs=35.1
Q ss_pred CCC-CCHHHHHHHhhhhCCcEEEEc-CCC-CCChhhH----HHHHHH-HHHcCC-EEEEecc
Q 018231 179 TGY-IDYDQLEKSATLFRPKLIVAG-ASA-YARLYDY----ERIRKV-CNKQKA-IMLADMA 231 (359)
Q Consensus 179 ~~~-~d~e~l~~~i~~~~~k~v~l~-~~n-~g~~~~l----~~i~~l-a~~~~~-~vivD~a 231 (359)
++. .|++.|.+.+.+.++..|++. |-| .|...+. +++++. .++.++ ++++|+-
T Consensus 36 ~~~~~~~~~l~~li~~~~~~~vVVGlP~~m~g~~~~~~~~~~~f~~~L~~r~~lpv~l~DER 97 (141)
T COG0816 36 NGKPQDFNALLKLVKEYQVDTVVVGLPLNMDGTEGPRAELARKFAERLKKRFNLPVVLWDER 97 (141)
T ss_pred cccHhhHHHHHHHHHHhCCCEEEEecCcCCCCCcchhHHHHHHHHHHHHHhcCCCEEEEcCc
Confidence 344 599999999998889999998 776 5644442 233333 234455 4778875
No 491
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=24.94 E-value=1.3e+02 Score=26.98 Aligned_cols=50 Identities=20% Similarity=0.258 Sum_probs=33.3
Q ss_pred CCHHHHHHHhhhhCCcEEEEc-CCCC-------------CChhhHHHHHHHHHHcCCEEEEeccc
Q 018231 182 IDYDQLEKSATLFRPKLIVAG-ASAY-------------ARLYDYERIRKVCNKQKAIMLADMAH 232 (359)
Q Consensus 182 ~d~e~l~~~i~~~~~k~v~l~-~~n~-------------g~~~~l~~i~~la~~~~~~vivD~a~ 232 (359)
-|--.|.+.+.. .++.+++. .+.+ |.....+.+.++.+++++-+++|++|
T Consensus 12 ~Dar~la~~L~~-~~~~~~~ss~t~~g~~l~~~~~~~~~~G~l~~e~l~~~l~e~~i~llIDATH 75 (257)
T COG2099 12 SDARALAKKLAA-APVDIILSSLTGYGAKLAEQIGPVRVGGFLGAEGLAAFLREEGIDLLIDATH 75 (257)
T ss_pred HHHHHHHHHhhc-cCccEEEEEcccccccchhccCCeeecCcCCHHHHHHHHHHcCCCEEEECCC
Confidence 356667777765 33333332 2212 12346789999999999999999998
No 492
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=24.93 E-value=3.7e+02 Score=25.29 Aligned_cols=25 Identities=12% Similarity=0.042 Sum_probs=20.1
Q ss_pred hhHHHHHHHHHHcCCEEEEeccccc
Q 018231 210 YDYERIRKVCNKQKAIMLADMAHIS 234 (359)
Q Consensus 210 ~~l~~i~~la~~~~~~vivD~a~~~ 234 (359)
.....+.++|+++|+.+|+.+-++.
T Consensus 147 ~~~~~l~~~A~~~gi~~Il~G~~~d 171 (343)
T TIGR03573 147 AIFASVYQVALKFNIPLIIWGENIA 171 (343)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCCHH
Confidence 3456788999999999999987643
No 493
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=24.79 E-value=2.3e+02 Score=25.90 Aligned_cols=51 Identities=8% Similarity=0.224 Sum_probs=39.7
Q ss_pred CCHHHHHHHhhhhCCcEEEEcCCCCCC---hhhHHHHHHHHHHcCCEEEEecccc
Q 018231 182 IDYDQLEKSATLFRPKLIVAGASAYAR---LYDYERIRKVCNKQKAIMLADMAHI 233 (359)
Q Consensus 182 ~d~e~l~~~i~~~~~k~v~l~~~n~g~---~~~l~~i~~la~~~~~~vivD~a~~ 233 (359)
-|++.++++++. ....|.+..++.+. +.--+++.++|+++|+.+=.|..|.
T Consensus 85 ~~~e~i~~Al~~-G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~veaE~ghl 138 (281)
T PRK06806 85 MTFEKIKEALEI-GFTSVMFDGSHLPLEENIQKTKEIVELAKQYGATVEAEIGRV 138 (281)
T ss_pred CCHHHHHHHHHc-CCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeE
Confidence 488999999987 78888888666542 2335688999999999987787764
No 494
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=24.37 E-value=1.7e+02 Score=27.06 Aligned_cols=50 Identities=6% Similarity=-0.057 Sum_probs=38.6
Q ss_pred CCCHHHHHHHhhhhCCcEEEEcCCCCCChhhHHHHHHHHHHcCCEEEEec
Q 018231 181 YIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADM 230 (359)
Q Consensus 181 ~~d~e~l~~~i~~~~~k~v~l~~~n~g~~~~l~~i~~la~~~~~~vivD~ 230 (359)
..++.++.+.+...-.+++.+-++..|.+....+++++|+.+|+.+++-+
T Consensus 215 ~~~~~d~~~~~~~~~~d~i~ik~~~~GGi~~~~~i~~~a~~~gi~~~~~~ 264 (307)
T TIGR01927 215 LWELPQLADEYGPGWRGALVIKPAIIGSPAKLRDLAQKAHRLGLQAVFSS 264 (307)
T ss_pred cCChHHHHHHHhcCCCceEEECchhcCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 44677788777652345666667778989999999999999999888753
No 495
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=24.33 E-value=2.5e+02 Score=27.28 Aligned_cols=52 Identities=4% Similarity=-0.053 Sum_probs=41.3
Q ss_pred CCCCCHHHHHHHhhhhCCcEEEEcCCCCCChhhHHHHHHHHHHcCCEEEEec
Q 018231 179 TGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADM 230 (359)
Q Consensus 179 ~~~~d~e~l~~~i~~~~~k~v~l~~~n~g~~~~l~~i~~la~~~~~~vivD~ 230 (359)
....+++++.+.+...-..++-+-.+..|.+.+..+++++|+++|+.+.+-+
T Consensus 304 Es~~t~~d~~~~i~~~a~d~v~iK~~k~GGIt~a~kia~lA~~~Gi~~~~g~ 355 (408)
T TIGR01502 304 EWCNTVEDVKFFTDAKAGHMVQIKTPDVGGVNNIARAIMYCKANGMGAYVGG 355 (408)
T ss_pred CCCCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEEEeC
Confidence 3456789999888764456666657778989999999999999999888754
No 496
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=24.24 E-value=2.2e+02 Score=26.45 Aligned_cols=49 Identities=14% Similarity=0.161 Sum_probs=37.1
Q ss_pred CCCHHHHHHHhhhhCCcEEEEcCCCCCChhhHHHHHHHHHHcCCEEEEe
Q 018231 181 YIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLAD 229 (359)
Q Consensus 181 ~~d~e~l~~~i~~~~~k~v~l~~~n~g~~~~l~~i~~la~~~~~~vivD 229 (359)
..++.++.+.+...-+.++.+.++..|.+.+..+++++|+++|+.++.-
T Consensus 232 ~~~~~~~~~~~~~~~~dvi~~d~~~~GGit~~~~~~~~A~~~gi~~~~~ 280 (324)
T TIGR01928 232 ITSLDDARNLIELGNVKVINIKPGRLGGLTEVQKAIETCREHGAKVWIG 280 (324)
T ss_pred cCCHHHHHHHHHcCCCCEEEeCcchhcCHHHHHHHHHHHHHcCCeEEEc
Confidence 4466777777765345666666777888888999999999999988764
No 497
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=24.12 E-value=2.2e+02 Score=22.18 Aligned_cols=46 Identities=11% Similarity=0.071 Sum_probs=29.6
Q ss_pred HHHHHHHhhhhCCcEEEEcCCCCCChhhHHHHHHHHHHcCCEEEEec
Q 018231 184 YDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADM 230 (359)
Q Consensus 184 ~e~l~~~i~~~~~k~v~l~~~n~g~~~~l~~i~~la~~~~~~vivD~ 230 (359)
..+..+.+...+.++|++. .+.....-.+.+..+|++++++++.-+
T Consensus 31 ~~~v~kaikkgka~LVilA-~D~s~~~~~~~i~~lc~~~~Ip~~~~~ 76 (117)
T TIGR03677 31 TNEVTKAVERGIAKLVVIA-EDVEPPEIVAHLPALCEEKGIPYVYVK 76 (117)
T ss_pred HHHHHHHHHcCCccEEEEe-CCCCcHHHHHHHHHHHHHcCCCEEEeC
Confidence 3556667776567777764 333322225788889999999866543
No 498
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=23.82 E-value=2.5e+02 Score=27.43 Aligned_cols=47 Identities=9% Similarity=0.198 Sum_probs=33.7
Q ss_pred CCHHHHHHHhhhhCCcEEEEc-----CCC-----CCChhhH----HHHHHHHHHcCCEEEE
Q 018231 182 IDYDQLEKSATLFRPKLIVAG-----ASA-----YARLYDY----ERIRKVCNKQKAIMLA 228 (359)
Q Consensus 182 ~d~e~l~~~i~~~~~k~v~l~-----~~n-----~g~~~~l----~~i~~la~~~~~~viv 228 (359)
.|+|++.+.+.+.+++++++. .+. -|.+..+ .++.++||+.|+.++.
T Consensus 155 t~~e~I~~~l~~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fi 215 (456)
T COG1066 155 TNLEDIIAELEQEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFI 215 (456)
T ss_pred cCHHHHHHHHHhcCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 489999999988799999884 111 1444444 3678899999987654
No 499
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=23.82 E-value=2.4e+02 Score=20.61 Aligned_cols=45 Identities=9% Similarity=0.157 Sum_probs=28.6
Q ss_pred HHHHHHHhhhhCCcEEEEcCCCCCChhhHHH-HHHHHHHcCCEEEEec
Q 018231 184 YDQLEKSATLFRPKLIVAGASAYARLYDYER-IRKVCNKQKAIMLADM 230 (359)
Q Consensus 184 ~e~l~~~i~~~~~k~v~l~~~n~g~~~~l~~-i~~la~~~~~~vivD~ 230 (359)
..++.+.+...+.+++++. .+.. ...... +..+|++++++++.=.
T Consensus 20 ~~~v~k~l~~~~~~lvilA-~d~~-~~~~~~~l~~~c~~~~Ip~~~~~ 65 (95)
T PF01248_consen 20 IKEVLKALKKGKAKLVILA-EDCS-PDSIKKHLPALCEEKNIPYVFVP 65 (95)
T ss_dssp HHHHHHHHHTTCESEEEEE-TTSS-SGHHHHHHHHHHHHTTEEEEEES
T ss_pred hHHHHHHHHcCCCcEEEEc-CCCC-hhhhcccchhheeccceeEEEEC
Confidence 4566667766567777774 3322 223444 8889999999876543
No 500
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=23.80 E-value=5.3e+02 Score=23.07 Aligned_cols=20 Identities=15% Similarity=0.202 Sum_probs=8.6
Q ss_pred hHHHHHHHHHHcCCEEEEec
Q 018231 211 DYERIRKVCNKQKAIMLADM 230 (359)
Q Consensus 211 ~l~~i~~la~~~~~~vivD~ 230 (359)
++++.++.+.+.+-+++.=+
T Consensus 116 s~~~a~~~l~~~~~vllttG 135 (248)
T PRK08057 116 DIEEAAEALAPFRRVLLTTG 135 (248)
T ss_pred CHHHHHHHhhccCCEEEecC
Confidence 44444444444333344333
Done!