Query 018233
Match_columns 359
No_of_seqs 347 out of 3024
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 07:15:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018233.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018233hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 100.0 1.5E-51 3.2E-56 392.4 14.6 255 100-356 32-287 (348)
2 cd02123 PA_C_RZF_like PA_C-RZF 99.9 4.1E-23 9E-28 179.4 14.2 119 101-220 21-142 (153)
3 cd02125 PA_VSR PA_VSR: Proteas 99.9 1.4E-22 3E-27 170.7 12.9 110 110-220 1-122 (127)
4 cd02126 PA_EDEM3_like PA_EDEM3 99.9 1.3E-22 2.7E-27 170.9 12.2 110 106-219 2-120 (126)
5 cd02127 PA_hPAP21_like PA_hPAP 99.9 2.7E-22 5.8E-27 166.8 12.9 108 110-221 1-112 (118)
6 cd02122 PA_GRAIL_like PA _GRAI 99.9 4.1E-21 9E-26 163.9 13.7 111 107-219 18-132 (138)
7 cd02132 PA_GO-like PA_GO-like: 99.9 7.1E-21 1.5E-25 162.9 12.8 112 100-219 15-133 (139)
8 cd04813 PA_1 PA_1: Protease-as 99.8 2.5E-20 5.4E-25 154.7 11.2 104 107-217 6-111 (117)
9 cd02129 PA_hSPPL_like PA_hSPPL 99.8 2E-19 4.3E-24 149.2 10.6 95 120-217 20-114 (120)
10 cd04818 PA_subtilisin_1 PA_sub 99.8 2.4E-18 5.2E-23 143.1 12.8 107 108-218 2-111 (118)
11 cd04816 PA_SaNapH_like PA_SaNa 99.8 1.6E-17 3.4E-22 139.1 13.2 109 108-219 5-116 (122)
12 cd02130 PA_ScAPY_like PA_ScAPY 99.7 5.4E-17 1.2E-21 135.8 12.3 97 118-219 20-116 (122)
13 COG5540 RING-finger-containing 99.7 5.7E-18 1.2E-22 156.6 -1.2 53 296-348 321-373 (374)
14 cd04817 PA_VapT_like PA_VapT_l 99.6 1.9E-15 4.1E-20 128.7 12.3 101 110-217 26-133 (139)
15 KOG3920 Uncharacterized conser 99.6 1.3E-16 2.9E-21 134.8 4.1 118 95-216 36-162 (193)
16 cd02124 PA_PoS1_like PA_PoS1_l 99.6 8.6E-15 1.9E-19 123.6 11.0 90 123-219 34-123 (129)
17 PF02225 PA: PA domain; Inter 99.6 1.5E-15 3.2E-20 122.1 5.4 95 118-215 4-101 (101)
18 PF13639 zf-RING_2: Ring finge 99.6 1.6E-15 3.5E-20 104.0 2.8 44 299-343 1-44 (44)
19 KOG2442 Uncharacterized conser 99.5 1.3E-13 2.7E-18 135.3 8.3 142 103-254 54-203 (541)
20 cd00538 PA PA: Protease-associ 99.4 1.2E-12 2.7E-17 109.0 9.4 92 126-219 26-120 (126)
21 cd02133 PA_C5a_like PA_C5a_lik 99.4 9.2E-12 2E-16 107.0 12.5 100 109-217 15-114 (143)
22 PF12678 zf-rbx1: RING-H2 zinc 99.3 2.7E-12 5.8E-17 97.7 4.2 45 298-343 19-73 (73)
23 PHA02929 N1R/p28-like protein; 99.3 1.9E-12 4.1E-17 119.4 3.9 74 273-347 149-227 (238)
24 cd04819 PA_2 PA_2: Protease-as 99.2 1.4E-10 2.9E-15 97.8 10.8 98 117-220 20-122 (127)
25 COG5243 HRD1 HRD ubiquitin lig 99.2 7.8E-12 1.7E-16 119.0 3.5 70 275-349 268-347 (491)
26 cd04815 PA_M28_2 PA_M28_2: Pro 99.1 4.1E-10 8.9E-15 95.8 7.2 105 110-219 7-128 (134)
27 cd00162 RING RING-finger (Real 99.0 2.5E-10 5.4E-15 77.2 3.9 45 300-346 1-45 (45)
28 cd02120 PA_subtilisin_like PA_ 99.0 1.6E-09 3.5E-14 90.6 9.1 84 129-219 36-120 (126)
29 PLN03208 E3 ubiquitin-protein 99.0 3.8E-10 8.3E-15 100.2 4.2 55 296-353 16-85 (193)
30 KOG0317 Predicted E3 ubiquitin 99.0 3.7E-10 7.9E-15 105.0 4.2 51 295-349 236-286 (293)
31 cd02128 PA_TfR PA_TfR: Proteas 99.0 2.1E-09 4.5E-14 95.6 7.9 112 104-218 13-156 (183)
32 PF13920 zf-C3HC4_3: Zinc fing 98.9 1.1E-09 2.3E-14 77.1 3.7 46 298-347 2-48 (50)
33 PF13923 zf-C3HC4_2: Zinc fing 98.9 9.5E-10 2.1E-14 73.3 3.2 39 301-342 1-39 (39)
34 KOG0823 Predicted E3 ubiquitin 98.9 1.2E-09 2.5E-14 98.9 4.0 57 295-354 44-102 (230)
35 PF12861 zf-Apc11: Anaphase-pr 98.9 1.3E-09 2.9E-14 84.2 3.4 53 297-349 20-84 (85)
36 PHA02926 zinc finger-like prot 98.8 4.1E-09 9E-14 94.8 3.5 54 295-348 167-231 (242)
37 PF14634 zf-RING_5: zinc-RING 98.8 5.6E-09 1.2E-13 71.5 3.4 44 300-344 1-44 (44)
38 PF00097 zf-C3HC4: Zinc finger 98.8 4.4E-09 9.5E-14 70.7 2.6 40 301-342 1-41 (41)
39 KOG0802 E3 ubiquitin ligase [P 98.8 3.1E-09 6.8E-14 110.1 2.5 53 296-349 289-343 (543)
40 smart00184 RING Ring finger. E 98.7 9.5E-09 2.1E-13 66.9 3.6 39 301-342 1-39 (39)
41 PF15227 zf-C3HC4_4: zinc fing 98.7 8.3E-09 1.8E-13 69.9 3.1 39 301-342 1-42 (42)
42 KOG0320 Predicted E3 ubiquitin 98.7 1.2E-08 2.6E-13 88.8 3.5 54 294-349 127-180 (187)
43 smart00504 Ubox Modified RING 98.6 4E-08 8.6E-13 72.1 4.1 48 299-350 2-49 (63)
44 KOG0828 Predicted E3 ubiquitin 98.6 1.9E-08 4.1E-13 99.3 2.0 53 296-348 569-635 (636)
45 smart00744 RINGv The RING-vari 98.5 1.5E-07 3.3E-12 65.9 3.6 43 300-343 1-49 (49)
46 COG5194 APC11 Component of SCF 98.4 1.6E-07 3.4E-12 71.0 3.4 49 298-347 20-81 (88)
47 TIGR00599 rad18 DNA repair pro 98.4 1.4E-07 3E-12 93.3 3.9 52 295-350 23-74 (397)
48 KOG1493 Anaphase-promoting com 98.4 7.5E-08 1.6E-12 72.0 1.0 51 297-347 19-81 (84)
49 KOG1734 Predicted RING-contain 98.4 6.8E-08 1.5E-12 88.9 0.2 58 295-352 221-286 (328)
50 PF13445 zf-RING_UBOX: RING-ty 98.4 2.6E-07 5.7E-12 62.8 2.7 39 301-340 1-43 (43)
51 cd02121 PA_GCPII_like PA_GCPII 98.3 1.6E-06 3.4E-11 79.7 8.2 98 118-218 43-190 (220)
52 cd04822 PA_M28_1_3 PA_M28_1_3: 98.3 6.2E-06 1.3E-10 71.4 10.8 93 118-214 18-131 (151)
53 COG5219 Uncharacterized conser 98.3 1.6E-07 3.5E-12 98.7 0.4 53 293-347 1464-1523(1525)
54 COG5574 PEX10 RING-finger-cont 98.2 5.2E-07 1.1E-11 83.2 2.8 51 297-350 214-265 (271)
55 cd04820 PA_M28_1_1 PA_M28_1_1: 98.1 9.6E-06 2.1E-10 69.1 8.2 65 116-183 18-97 (137)
56 PF04564 U-box: U-box domain; 98.1 1.6E-06 3.4E-11 65.9 2.2 52 298-352 4-55 (73)
57 PF11793 FANCL_C: FANCL C-term 98.1 8.3E-07 1.8E-11 66.9 0.4 51 298-348 2-67 (70)
58 cd04814 PA_M28_1 PA_M28_1: Pro 98.1 1.7E-05 3.8E-10 67.9 8.0 92 118-213 18-133 (142)
59 KOG4265 Predicted E3 ubiquitin 98.1 2.6E-06 5.7E-11 81.8 3.3 50 296-349 288-338 (349)
60 KOG2164 Predicted E3 ubiquitin 98.0 2.7E-06 5.8E-11 85.1 3.1 50 298-350 186-239 (513)
61 KOG0804 Cytoplasmic Zn-finger 98.0 1.7E-06 3.7E-11 85.0 1.6 49 296-347 173-222 (493)
62 cd02131 PA_hNAALADL2_like PA_h 98.0 1.3E-05 2.7E-10 68.9 6.4 95 116-215 11-137 (153)
63 TIGR00570 cdk7 CDK-activating 98.0 4.8E-06 1E-10 79.5 4.2 54 298-351 3-58 (309)
64 KOG2930 SCF ubiquitin ligase, 98.0 4.3E-06 9.3E-11 66.3 2.8 48 297-345 45-106 (114)
65 KOG0287 Postreplication repair 97.9 4.8E-06 1E-10 79.2 1.5 54 297-354 22-75 (442)
66 KOG2177 Predicted E3 ubiquitin 97.9 5.1E-06 1.1E-10 77.9 1.7 46 295-344 10-55 (386)
67 KOG0827 Predicted E3 ubiquitin 97.8 8.3E-06 1.8E-10 78.8 2.1 47 298-345 4-54 (465)
68 COG5432 RAD18 RING-finger-cont 97.7 2E-05 4.4E-10 73.5 2.0 52 296-351 23-74 (391)
69 KOG0824 Predicted E3 ubiquitin 97.7 2.1E-05 4.5E-10 74.0 2.0 54 298-354 7-60 (324)
70 KOG4445 Uncharacterized conser 97.6 2.2E-05 4.9E-10 73.6 2.0 60 295-354 112-193 (368)
71 KOG0825 PHD Zn-finger protein 97.5 2.3E-05 5E-10 81.5 -0.1 52 296-348 121-172 (1134)
72 KOG1039 Predicted E3 ubiquitin 97.5 5.6E-05 1.2E-09 73.6 2.2 53 296-348 159-222 (344)
73 KOG1645 RING-finger-containing 97.4 0.00011 2.3E-09 71.8 3.1 49 297-345 3-54 (463)
74 KOG0311 Predicted E3 ubiquitin 97.3 3.9E-05 8.5E-10 73.6 -0.9 52 295-349 40-92 (381)
75 KOG1428 Inhibitor of type V ad 97.2 0.00026 5.7E-09 77.7 3.4 69 280-349 3469-3546(3738)
76 KOG1785 Tyrosine kinase negati 97.2 0.00014 3E-09 70.7 1.1 50 295-347 366-416 (563)
77 KOG0801 Predicted E3 ubiquitin 97.1 0.00013 2.8E-09 62.7 0.6 31 295-325 174-204 (205)
78 KOG1941 Acetylcholine receptor 97.1 0.00022 4.8E-09 69.2 1.3 48 297-344 364-413 (518)
79 PF14835 zf-RING_6: zf-RING of 97.0 0.00016 3.4E-09 53.0 0.1 52 298-354 7-58 (65)
80 KOG3970 Predicted E3 ubiquitin 97.0 0.00059 1.3E-08 61.7 3.7 52 297-349 49-107 (299)
81 KOG4172 Predicted E3 ubiquitin 97.0 0.00021 4.5E-09 50.3 0.4 47 297-347 6-54 (62)
82 KOG0978 E3 ubiquitin ligase in 97.0 0.00023 5E-09 74.6 0.8 49 299-350 644-692 (698)
83 PF11789 zf-Nse: Zinc-finger o 96.9 0.00042 9.2E-09 50.0 1.7 43 297-341 10-53 (57)
84 KOG4159 Predicted E3 ubiquitin 96.7 0.00089 1.9E-08 66.6 2.7 50 295-348 81-130 (398)
85 PHA02862 5L protein; Provision 96.7 0.001 2.3E-08 56.3 2.7 47 298-348 2-54 (156)
86 PF05883 Baculo_RING: Baculovi 96.5 0.0012 2.6E-08 55.6 1.5 35 298-332 26-66 (134)
87 PF12906 RINGv: RING-variant d 96.5 0.0019 4.1E-08 44.7 2.1 41 301-342 1-47 (47)
88 PHA02825 LAP/PHD finger-like p 96.4 0.0026 5.6E-08 54.9 3.3 50 296-349 6-61 (162)
89 KOG1571 Predicted E3 ubiquitin 96.4 0.0018 3.9E-08 62.7 2.6 47 295-348 302-348 (355)
90 KOG1814 Predicted E3 ubiquitin 96.3 0.0016 3.5E-08 63.8 1.7 47 297-343 183-236 (445)
91 KOG0827 Predicted E3 ubiquitin 96.2 0.00023 4.9E-09 69.1 -4.7 54 298-352 196-250 (465)
92 KOG0297 TNF receptor-associate 96.2 0.0023 5E-08 63.9 2.1 56 295-353 18-73 (391)
93 PF14570 zf-RING_4: RING/Ubox 95.9 0.0042 9.2E-08 43.0 1.5 45 301-346 1-47 (48)
94 PF10367 Vps39_2: Vacuolar sor 95.7 0.0052 1.1E-07 49.5 1.6 34 295-329 75-108 (109)
95 COG5222 Uncharacterized conser 95.6 0.0056 1.2E-07 57.7 1.7 53 299-354 275-329 (427)
96 KOG3039 Uncharacterized conser 95.6 0.013 2.7E-07 54.1 3.7 56 297-353 220-276 (303)
97 KOG2879 Predicted E3 ubiquitin 95.5 0.015 3.2E-07 54.4 3.8 53 295-349 236-289 (298)
98 PF14447 Prok-RING_4: Prokaryo 95.4 0.009 2E-07 42.4 1.6 48 297-350 6-53 (55)
99 KOG1002 Nucleotide excision re 95.4 0.0086 1.9E-07 60.5 2.1 53 294-349 532-588 (791)
100 COG5236 Uncharacterized conser 95.3 0.021 4.5E-07 55.0 4.2 63 280-346 44-107 (493)
101 KOG2660 Locus-specific chromos 95.2 0.0071 1.5E-07 58.0 0.9 53 295-350 12-64 (331)
102 KOG4275 Predicted E3 ubiquitin 95.2 0.0059 1.3E-07 57.5 0.3 41 298-346 300-341 (350)
103 COG5152 Uncharacterized conser 95.1 0.0078 1.7E-07 53.6 0.9 45 298-346 196-240 (259)
104 KOG4692 Predicted E3 ubiquitin 95.1 0.014 3.1E-07 56.3 2.6 49 296-348 420-468 (489)
105 KOG4185 Predicted E3 ubiquitin 95.1 0.015 3.2E-07 55.8 2.6 49 298-346 3-54 (296)
106 KOG0826 Predicted E3 ubiquitin 95.0 0.007 1.5E-07 57.9 0.3 57 286-346 288-345 (357)
107 PHA03096 p28-like protein; Pro 94.6 0.018 3.9E-07 55.0 1.9 45 299-343 179-230 (284)
108 KOG1813 Predicted E3 ubiquitin 94.0 0.019 4.2E-07 54.2 0.8 48 297-348 240-287 (313)
109 KOG4739 Uncharacterized protei 94.0 0.03 6.4E-07 51.7 1.8 51 299-353 4-54 (233)
110 KOG2114 Vacuolar assembly/sort 93.9 0.033 7.1E-07 59.4 2.1 42 298-345 840-881 (933)
111 KOG1940 Zn-finger protein [Gen 93.9 0.024 5.3E-07 53.6 1.1 45 299-344 159-204 (276)
112 PF04641 Rtf2: Rtf2 RING-finge 93.8 0.1 2.3E-06 49.2 5.3 53 295-349 110-163 (260)
113 PF08746 zf-RING-like: RING-li 93.6 0.035 7.5E-07 37.6 1.2 42 301-342 1-43 (43)
114 KOG1952 Transcription factor N 93.5 0.044 9.6E-07 58.4 2.4 49 296-344 189-244 (950)
115 COG5175 MOT2 Transcriptional r 93.4 0.057 1.2E-06 51.9 2.7 55 296-350 12-67 (480)
116 cd04821 PA_M28_1_2 PA_M28_1_2: 93.2 0.18 4E-06 44.0 5.4 38 145-182 47-103 (157)
117 KOG2034 Vacuolar sorting prote 92.9 0.052 1.1E-06 58.3 1.7 36 295-331 814-849 (911)
118 KOG1001 Helicase-like transcri 92.7 0.047 1E-06 58.2 1.2 47 299-349 455-502 (674)
119 PF07800 DUF1644: Protein of u 92.1 0.11 2.4E-06 45.0 2.4 57 298-354 2-98 (162)
120 PF14446 Prok-RING_1: Prokaryo 91.9 0.19 4E-06 35.8 3.0 34 297-330 4-38 (54)
121 PF10272 Tmpp129: Putative tra 91.7 0.17 3.7E-06 49.8 3.6 31 319-349 311-353 (358)
122 COG5183 SSM4 Protein involved 91.2 0.15 3.1E-06 54.3 2.7 54 295-349 9-68 (1175)
123 KOG3053 Uncharacterized conser 90.9 0.12 2.7E-06 48.0 1.6 52 295-346 17-81 (293)
124 KOG1100 Predicted E3 ubiquitin 90.5 0.1 2.2E-06 47.6 0.8 40 301-348 161-201 (207)
125 KOG3002 Zn finger protein [Gen 90.2 0.17 3.8E-06 48.7 2.1 44 296-347 46-91 (299)
126 KOG3268 Predicted E3 ubiquitin 90.2 0.22 4.8E-06 43.8 2.5 53 297-349 164-230 (234)
127 KOG3800 Predicted E3 ubiquitin 89.9 0.29 6.3E-06 46.4 3.2 51 300-350 2-54 (300)
128 KOG2932 E3 ubiquitin ligase in 89.6 0.15 3.2E-06 48.6 1.1 42 300-346 92-133 (389)
129 KOG1609 Protein involved in mR 89.4 0.22 4.7E-06 47.8 2.2 52 298-349 78-136 (323)
130 KOG0298 DEAD box-containing he 87.9 0.18 3.9E-06 56.3 0.4 47 297-346 1152-1198(1394)
131 KOG3161 Predicted E3 ubiquitin 87.0 0.22 4.8E-06 51.8 0.5 46 298-347 11-57 (861)
132 KOG2817 Predicted E3 ubiquitin 85.3 0.74 1.6E-05 45.5 3.1 49 295-343 331-381 (394)
133 KOG0309 Conserved WD40 repeat- 84.7 0.56 1.2E-05 49.7 2.1 25 316-341 1045-1069(1081)
134 KOG1829 Uncharacterized conser 84.6 0.35 7.6E-06 50.4 0.5 42 297-342 510-556 (580)
135 KOG0802 E3 ubiquitin ligase [P 84.3 0.55 1.2E-05 49.1 1.9 52 295-354 476-527 (543)
136 KOG1812 Predicted E3 ubiquitin 82.4 0.61 1.3E-05 46.6 1.2 39 297-335 145-184 (384)
137 KOG0825 PHD Zn-finger protein 82.2 1.2 2.5E-05 47.7 3.2 56 295-350 93-157 (1134)
138 COG5220 TFB3 Cdk activating ki 80.5 1 2.2E-05 41.6 1.9 48 297-344 9-61 (314)
139 KOG3899 Uncharacterized conser 80.5 0.91 2E-05 43.1 1.6 30 319-348 325-366 (381)
140 smart00132 LIM Zinc-binding do 78.8 1.6 3.5E-05 27.6 2.0 38 300-347 1-38 (39)
141 KOG4362 Transcriptional regula 78.6 0.56 1.2E-05 49.6 -0.5 53 298-353 21-75 (684)
142 smart00249 PHD PHD zinc finger 78.2 0.72 1.6E-05 30.5 0.1 31 300-330 1-31 (47)
143 KOG2195 Transferrin receptor a 78.0 3.7 8.1E-05 44.2 5.4 70 111-181 149-218 (702)
144 PF13901 DUF4206: Domain of un 75.9 1.9 4.1E-05 39.2 2.2 42 297-344 151-197 (202)
145 KOG4367 Predicted Zn-finger pr 73.2 1.9 4.2E-05 43.1 1.7 36 296-334 2-37 (699)
146 KOG2066 Vacuolar assembly/sort 72.8 1.5 3.3E-05 46.9 0.9 45 296-342 782-830 (846)
147 PF03854 zf-P11: P-11 zinc fin 70.9 1.7 3.7E-05 30.0 0.5 32 317-349 16-48 (50)
148 KOG3039 Uncharacterized conser 68.2 3.8 8.3E-05 38.1 2.3 37 295-334 40-76 (303)
149 PF05290 Baculo_IE-1: Baculovi 65.9 6.1 0.00013 33.4 2.9 51 297-350 79-135 (140)
150 KOG3005 GIY-YIG type nuclease 64.8 3.9 8.5E-05 38.5 1.7 50 297-346 181-242 (276)
151 PF00412 LIM: LIM domain; Int 64.6 4 8.7E-05 28.5 1.4 40 301-350 1-40 (58)
152 PF02891 zf-MIZ: MIZ/SP-RING z 63.3 8 0.00017 26.9 2.7 41 300-345 4-50 (50)
153 KOG1815 Predicted E3 ubiquitin 62.9 4.7 0.0001 41.1 2.1 38 296-335 68-105 (444)
154 PF09889 DUF2116: Uncharacteri 62.0 12 0.00026 27.2 3.4 30 54-83 20-49 (59)
155 KOG2807 RNA polymerase II tran 57.7 11 0.00023 36.7 3.3 68 277-345 309-376 (378)
156 KOG3842 Adaptor protein Pellin 57.2 11 0.00023 36.5 3.2 56 294-349 337-416 (429)
157 KOG4718 Non-SMC (structural ma 56.1 6 0.00013 36.0 1.3 42 298-342 181-222 (235)
158 cd03029 GRX_hybridPRX5 Glutare 54.3 19 0.0004 26.3 3.6 57 149-206 2-59 (72)
159 KOG3113 Uncharacterized conser 51.7 16 0.00034 34.3 3.3 52 296-350 109-161 (293)
160 PF00628 PHD: PHD-finger; Int 48.8 7.6 0.00017 26.5 0.6 44 300-343 1-49 (51)
161 PF07172 GRP: Glycine rich pro 48.7 14 0.00031 29.4 2.2 9 69-77 1-9 (95)
162 KOG1729 FYVE finger containing 48.2 3.7 8.1E-05 39.4 -1.4 39 298-336 214-252 (288)
163 PF15435 UNC119_bdg: UNC119-bi 48.0 9.3 0.0002 33.1 1.1 31 44-74 27-57 (197)
164 TIGR02190 GlrX-dom Glutaredoxi 47.4 28 0.00061 26.0 3.7 60 146-206 6-66 (79)
165 COG4847 Uncharacterized protei 47.2 16 0.00035 29.0 2.2 33 298-331 6-38 (103)
166 KOG0269 WD40 repeat-containing 47.1 15 0.00032 39.6 2.6 45 300-346 781-827 (839)
167 PF06679 DUF1180: Protein of u 42.5 12 0.00026 32.9 1.0 23 241-263 99-121 (163)
168 KOG1812 Predicted E3 ubiquitin 42.2 12 0.00026 37.4 1.1 44 298-342 306-351 (384)
169 PLN02189 cellulose synthase 41.5 32 0.0007 38.6 4.3 51 297-347 33-87 (1040)
170 COG5109 Uncharacterized conser 41.0 21 0.00046 34.5 2.4 48 295-342 333-382 (396)
171 PF13717 zinc_ribbon_4: zinc-r 40.6 14 0.0003 23.9 0.8 25 300-324 4-36 (36)
172 PF06844 DUF1244: Protein of u 40.0 18 0.00039 26.8 1.4 13 322-334 11-23 (68)
173 PF10571 UPF0547: Uncharacteri 39.6 14 0.0003 22.1 0.7 9 300-308 2-10 (26)
174 TIGR00622 ssl1 transcription f 38.8 34 0.00074 28.1 3.0 45 298-343 55-110 (112)
175 PF14569 zf-UDP: Zinc-binding 38.3 37 0.0008 26.0 2.9 54 297-350 8-65 (80)
176 PF06024 DUF912: Nucleopolyhed 38.0 14 0.0003 29.7 0.6 17 235-251 63-79 (101)
177 cd03028 GRX_PICOT_like Glutare 37.5 77 0.0017 24.4 4.9 69 148-217 8-86 (90)
178 cd00350 rubredoxin_like Rubred 37.5 16 0.00035 22.9 0.8 8 338-345 19-26 (33)
179 PF04423 Rad50_zn_hook: Rad50 36.8 12 0.00026 26.3 0.1 12 338-349 22-33 (54)
180 KOG3579 Predicted E3 ubiquitin 36.3 21 0.00046 34.0 1.7 48 298-348 268-329 (352)
181 PF15102 TMEM154: TMEM154 prot 35.9 29 0.00062 29.9 2.3 8 327-334 129-136 (146)
182 PF04710 Pellino: Pellino; In 35.6 12 0.00027 37.2 0.0 52 297-348 327-402 (416)
183 PF07649 C1_3: C1-like domain; 35.1 26 0.00056 21.3 1.4 29 300-328 2-30 (30)
184 PF07975 C1_4: TFIIH C1-like d 33.7 30 0.00066 24.3 1.7 42 301-343 2-50 (51)
185 PF06024 DUF912: Nucleopolyhed 31.9 15 0.00033 29.4 0.0 28 234-261 65-92 (101)
186 PF01034 Syndecan: Syndecan do 31.9 19 0.00042 26.5 0.5 21 245-265 22-42 (64)
187 PF14311 DUF4379: Domain of un 30.7 31 0.00067 24.2 1.4 22 319-342 34-55 (55)
188 PF05715 zf-piccolo: Piccolo Z 30.2 33 0.00072 24.8 1.5 15 337-351 3-17 (61)
189 KOG4577 Transcription factor L 29.7 14 0.0003 35.2 -0.7 44 298-351 92-135 (383)
190 KOG4185 Predicted E3 ubiquitin 29.7 9.8 0.00021 36.3 -1.8 48 298-345 207-265 (296)
191 PLN02195 cellulose synthase A 29.3 63 0.0014 36.2 4.1 58 297-354 5-66 (977)
192 PLN02436 cellulose synthase A 29.0 64 0.0014 36.5 4.1 51 297-347 35-89 (1094)
193 KOG3858 Ephrin, ligand for Eph 28.6 30 0.00065 32.2 1.3 9 4-12 127-135 (233)
194 PF02009 Rifin_STEVOR: Rifin/s 28.5 9.1 0.0002 37.0 -2.2 27 236-262 258-284 (299)
195 TIGR01477 RIFIN variant surfac 28.3 15 0.00032 36.2 -0.8 28 235-262 311-338 (353)
196 PTZ00046 rifin; Provisional 27.1 16 0.00035 36.0 -0.8 28 235-262 316-343 (358)
197 PLN02915 cellulose synthase A 26.6 87 0.0019 35.4 4.5 52 296-347 13-68 (1044)
198 PRK10824 glutaredoxin-4; Provi 26.3 74 0.0016 26.2 3.1 71 147-218 14-94 (115)
199 cd03027 GRX_DEP Glutaredoxin ( 26.0 1.1E+02 0.0024 22.1 3.8 54 148-205 1-59 (73)
200 PF01363 FYVE: FYVE zinc finge 25.5 24 0.00052 25.7 0.1 35 297-331 8-43 (69)
201 KOG0824 Predicted E3 ubiquitin 25.4 29 0.00062 33.4 0.6 56 295-353 102-157 (324)
202 COG0695 GrxC Glutaredoxin and 25.3 1.6E+02 0.0035 22.2 4.7 57 149-205 2-61 (80)
203 PRK10638 glutaredoxin 3; Provi 24.8 1E+02 0.0023 23.0 3.6 56 149-205 3-60 (83)
204 PRK11200 grxA glutaredoxin 1; 23.8 1.6E+02 0.0036 21.9 4.5 57 149-206 2-67 (85)
205 cd00065 FYVE FYVE domain; Zinc 23.7 53 0.0012 22.7 1.6 35 298-332 2-37 (57)
206 KOG3842 Adaptor protein Pellin 23.5 30 0.00065 33.5 0.3 43 297-344 289-349 (429)
207 KOG2979 Protein involved in DN 22.9 44 0.00094 31.5 1.3 43 298-342 176-219 (262)
208 TIGR02194 GlrX_NrdH Glutaredox 22.5 1.1E+02 0.0024 22.1 3.2 53 151-204 2-55 (72)
209 PRK11827 hypothetical protein; 22.4 35 0.00076 24.8 0.4 19 330-349 3-21 (60)
210 PF05605 zf-Di19: Drought indu 22.1 11 0.00023 26.4 -2.3 14 298-311 2-15 (54)
211 KOG3165 Predicted nucleic-acid 21.9 63 0.0014 28.4 2.0 24 313-336 125-150 (195)
212 cd02066 GRX_family Glutaredoxi 21.6 1.2E+02 0.0026 20.9 3.2 31 150-180 2-32 (72)
213 PF13832 zf-HC5HC2H_2: PHD-zin 21.6 82 0.0018 25.1 2.5 31 298-330 55-87 (110)
214 PF06906 DUF1272: Protein of u 21.6 1.7E+02 0.0037 21.0 3.7 46 299-348 6-53 (57)
215 PF09943 DUF2175: Uncharacteri 21.5 79 0.0017 25.5 2.3 32 300-332 4-35 (101)
216 PF15353 HECA: Headcase protei 21.3 56 0.0012 26.6 1.4 15 319-333 40-54 (107)
217 PF10083 DUF2321: Uncharacteri 20.9 55 0.0012 28.5 1.4 46 302-351 8-54 (158)
218 KOG2068 MOT2 transcription fac 20.7 83 0.0018 30.7 2.7 52 297-350 248-301 (327)
219 KOG1814 Predicted E3 ubiquitin 20.7 67 0.0014 32.3 2.1 26 330-355 362-387 (445)
220 TIGR02189 GlrX-like_plant Glut 20.2 1.5E+02 0.0033 23.3 3.7 72 147-218 7-85 (99)
221 KOG2071 mRNA cleavage and poly 20.0 49 0.0011 34.7 1.1 35 296-331 511-556 (579)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-51 Score=392.40 Aligned_cols=255 Identities=41% Similarity=0.738 Sum_probs=217.7
Q ss_pred ccccccccccccccccCCCCeeEEEeeCCCCCCCCCCCCCCCCCCCCcceEEEEEcCCCChHHHHHHHHHcCCcEEEEec
Q 018233 100 LSLHFPDLPAKFAVDVNSSGTCGALHVADPADACSPLSNPVASNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYN 179 (359)
Q Consensus 100 ~~~~f~~~~A~FG~~~~~~~~~g~L~~~~p~~aC~~~~~~~~~~~~~~~~ivLV~RG~CsF~~K~~~Aq~aGA~avIi~n 179 (359)
.+.+|.+.+|+||+.+..++..|.|+.++|.|||+++.+.+........+++||+||+|+|++|+++||++|++|+||||
T Consensus 32 ~S~sf~d~~a~f~~s~~~e~~~G~l~~~ep~~aC~~i~~~p~~~~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVyn 111 (348)
T KOG4628|consen 32 TSLSFADLPALFGPSLPSEGNLGVLVVAEPLNACNPITNFPEHSTRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAIVYN 111 (348)
T ss_pred ccccccCCccccCCccccccceeeeecCCCccccCccccCccCCCCCcceEEEEEccCCchHHHHhhcccccCceEEEec
Confidence 67789999999999999999999999999999999998744333445689999999999999999999999999999999
Q ss_pred ccCccccccccCCCCcceeeEEeechhhHHHHHHhhccCCCceeecC-CCCCccccceeeeehhHHHHHHHhhhhccCCC
Q 018233 180 DREKGSLVSMTASHEGVKVHAIFVSLETGVYLKEHARGETGECCIFP-ESNRGSWSVLMVSVFSLIVVFALFAVAFITPR 258 (359)
Q Consensus 180 ~~~~~~~~~m~~~~~~i~Ip~v~i~~~~G~~L~~~~~~~~~~v~I~~-~~~~~~~~~m~IsfiillvIiavlli~~~~~r 258 (359)
|.+.+.++.|..+..++.|+++|++...|+.|.++.......+...+ ....+.|.++.++++.++++.+++++.+++++
T Consensus 112 n~~~~~lv~~~~~~~~v~i~~~~vs~~~ge~l~~~~~~~~~~~~~~~~~~~~~~ws~~~~~~i~~l~v~~il~~~f~i~~ 191 (348)
T KOG4628|consen 112 NVGSEDLVAMASNPSKVDIHIVFVSVFSGELLSSYAGRTEFECLLIPLGFDTSPWSILAISLISLLTVVAILVTCFFIYR 191 (348)
T ss_pred CCCCchheeeccCCccceeEEEEEeeehHHHHHHhhcccceeeeeccccccCCcchhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 98888889998888999999999999999999997665555555555 78888999988888888888888877777766
Q ss_pred CCCCCCCCCCccccccchhhhhccceeeeccCCCcCCCCCcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCC
Q 018233 259 PWRPWPGQNQPLSRRLDSKVVEALPCFLFSSASSSQCHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTF 338 (359)
Q Consensus 259 ~r~~~~~~~~~~~~~l~~~~i~~lp~~~~~~~~~~~~~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~ 338 (359)
++...+.++..+..++.++.++++|...|....++... +.|+||||+|++||++|+|||+|.||..|||+||.++++.
T Consensus 192 ~~~~~~~r~~~~~~r~~k~~l~~~p~~~f~~~~~~~~~--~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~ 269 (348)
T KOG4628|consen 192 IRRLIRARNRLRRNRLIKRLLKKLPVRTFTKGDDEDAT--DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTF 269 (348)
T ss_pred HHHHHHHHhHhhhhhhHHHHHhhCCcEEeccccccCCC--ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCcc
Confidence 55444333324466889999999999999986655222 7999999999999999999999999999999999999878
Q ss_pred CCCccccCCCCCCCcccc
Q 018233 339 CPVCKHDMRNNSESNEVK 356 (359)
Q Consensus 339 CPlCR~~i~~~~~~~~~~ 356 (359)
||+||+++....+.++..
T Consensus 270 CPvCK~di~~~~~~~~~~ 287 (348)
T KOG4628|consen 270 CPVCKRDIRTDSGSEPVS 287 (348)
T ss_pred CCCCCCcCCCCCCCCCcc
Confidence 999999998877665543
No 2
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=99.90 E-value=4.1e-23 Score=179.41 Aligned_cols=119 Identities=47% Similarity=0.747 Sum_probs=101.9
Q ss_pred cccccccccccccccCCCCeeEEEeeCCCCCCCCCCCCCCCCCCCCcceEEEEEcCCCChHHHHHHHHHcCCcEEEEecc
Q 018233 101 SLHFPDLPAKFAVDVNSSGTCGALHVADPADACSPLSNPVASNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYND 180 (359)
Q Consensus 101 ~~~f~~~~A~FG~~~~~~~~~g~L~~~~p~~aC~~~~~~~~~~~~~~~~ivLV~RG~CsF~~K~~~Aq~aGA~avIi~n~ 180 (359)
+..|...+|.||.+.+++++.|.|+.++|.+||+++++++.......++|+||+||+|+|.+|++|||++||++|||||+
T Consensus 21 ~~~~~~~~A~FG~~~~~~~~~g~lv~~~p~~gC~~~~~~~~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII~n~ 100 (153)
T cd02123 21 TDEFDDLPANFGPIPPGSGLKGVLVVAEPLNACSPIENPPLNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIVYND 100 (153)
T ss_pred cceEeeecccCCCCCCCCceEEEEEeCCccccCCCCcccccccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEEEEC
Confidence 46788899999999999999999999999999999986431123357899999999999999999999999999999998
Q ss_pred cCccccccccCCCC---cceeeEEeechhhHHHHHHhhccCCC
Q 018233 181 REKGSLVSMTASHE---GVKVHAIFVSLETGVYLKEHARGETG 220 (359)
Q Consensus 181 ~~~~~~~~m~~~~~---~i~Ip~v~i~~~~G~~L~~~~~~~~~ 220 (359)
.++ .+..|.+++. .++||+++|++++|+.|++.++..+.
T Consensus 101 ~~~-~~~~m~~~~~~~~~v~IP~v~Is~~dg~~L~~~l~~~~~ 142 (153)
T cd02123 101 ESN-DLISMSGNDQEIKGIDIPSVFVGKSTGEILKKYASYEKG 142 (153)
T ss_pred CCC-cceeccCCCCCCcCCEEEEEEeeHHHHHHHHHHHhcCCc
Confidence 763 5666766543 68999999999999999998877665
No 3
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=99.89 E-value=1.4e-22 Score=170.66 Aligned_cols=110 Identities=20% Similarity=0.306 Sum_probs=90.5
Q ss_pred ccccccCCCCeeEEEeeC-CCCCCCCCCCCCCCCC---CCCcceEEEEEcCCCChHHHHHHHHHcCCcEEEEecccCccc
Q 018233 110 KFAVDVNSSGTCGALHVA-DPADACSPLSNPVASN---DADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREKGS 185 (359)
Q Consensus 110 ~FG~~~~~~~~~g~L~~~-~p~~aC~~~~~~~~~~---~~~~~~ivLV~RG~CsF~~K~~~Aq~aGA~avIi~n~~~~~~ 185 (359)
+||.++|++.+.|.|+++ ++.+||+++++...++ ....++||||+||+|+|.+|++|||++||++|||||+.++ +
T Consensus 1 ~FG~~~yg~~~~G~l~~~~~~~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~-~ 79 (127)
T cd02125 1 NFGLPQYGGTLTGVVVYPKENRTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDE-P 79 (127)
T ss_pred CCCCCCcCCeeEEEEEecCCccccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCC-c
Confidence 699999999999999988 6789999997633221 1346799999999999999999999999999999998753 4
Q ss_pred cccccC--------CCCcceeeEEeechhhHHHHHHhhccCCC
Q 018233 186 LVSMTA--------SHEGVKVHAIFVSLETGVYLKEHARGETG 220 (359)
Q Consensus 186 ~~~m~~--------~~~~i~Ip~v~i~~~~G~~L~~~~~~~~~ 220 (359)
+..|.. ..++++||+++|++++|+.|++.+..+..
T Consensus 80 ~~~m~~~~~~~~~~~~~~i~IP~v~Is~~~G~~L~~~l~~g~~ 122 (127)
T cd02125 80 LLTMDTPEESGSADYIEKITIPSALITKAFGEKLKKAISNGEM 122 (127)
T ss_pred cccccCcccccccccCCCceEeEEEECHHHHHHHHHHHhcCCe
Confidence 455532 23457999999999999999998876543
No 4
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=99.89 E-value=1.3e-22 Score=170.90 Aligned_cols=110 Identities=25% Similarity=0.461 Sum_probs=92.4
Q ss_pred ccccccccccCCC-CeeEEEeeCCCCCCCCCCCCCCCCCCCCcceEEEEEcCCCChHHHHHHHHHcCCcEEEEecccCcc
Q 018233 106 DLPAKFAVDVNSS-GTCGALHVADPADACSPLSNPVASNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREKG 184 (359)
Q Consensus 106 ~~~A~FG~~~~~~-~~~g~L~~~~p~~aC~~~~~~~~~~~~~~~~ivLV~RG~CsF~~K~~~Aq~aGA~avIi~n~~~~~ 184 (359)
..||+||.+++.. ++.|.|+.++|.+||++++++.. ..++|+||+||+|+|.+|+++||++||+|||||||.+++
T Consensus 2 ~~pa~FG~~~~~~~~~~g~l~~~~p~~gC~~~~~~~~----~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~ 77 (126)
T cd02126 2 AGPAQFGMDLTGDKAGVGRVVKAKPYRACSEITNAEE----VKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGS 77 (126)
T ss_pred CCCcccCCcCCCCCCceEEEEeCCchhcccCCCCccc----cCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCc
Confidence 3589999999864 78999999999999999875332 367999999999999999999999999999999886542
Q ss_pred -----ccccccCCC---CcceeeEEeechhhHHHHHHhhccCC
Q 018233 185 -----SLVSMTASH---EGVKVHAIFVSLETGVYLKEHARGET 219 (359)
Q Consensus 185 -----~~~~m~~~~---~~i~Ip~v~i~~~~G~~L~~~~~~~~ 219 (359)
.+..|.++. +.+.||+++|++.+|+.|++.++.+.
T Consensus 78 ~~~~~~~~~m~~~~~~~~~~~IP~v~I~~~dG~~L~~~l~~~~ 120 (126)
T cd02126 78 SSDTAPMFAMSGDGDSTDDVTIPVVFLFSKEGSKLLAAIKEHQ 120 (126)
T ss_pred cccccceeEeecCCCCCCCCeEEEEEEEHHHHHHHHHHHHhCC
Confidence 345566554 36899999999999999999887653
No 5
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.88 E-value=2.7e-22 Score=166.78 Aligned_cols=108 Identities=28% Similarity=0.302 Sum_probs=91.2
Q ss_pred ccccccCCCCeeEEEeeCCCCCCCCCCCCCCCCCCCCcceEEEEEcCCCChHHHHHHHHHcCCcEEEEecccCc--cccc
Q 018233 110 KFAVDVNSSGTCGALHVADPADACSPLSNPVASNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREK--GSLV 187 (359)
Q Consensus 110 ~FG~~~~~~~~~g~L~~~~p~~aC~~~~~~~~~~~~~~~~ivLV~RG~CsF~~K~~~Aq~aGA~avIi~n~~~~--~~~~ 187 (359)
.||.+++.+...|+|+.++|.+||++..+... ..++|+||+||+|+|.+|+++||++||+||||||+.++ ...+
T Consensus 1 ~~~~~~~~~~~~~~lv~~~p~~gC~~~~~~~~----~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~ 76 (118)
T cd02127 1 DFGTIFNTRYKHVPLVPADPLEACEELRNIHD----INGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYV 76 (118)
T ss_pred CCCccccccccceEEEECCccccCCCCCCccc----cCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccce
Confidence 48999999999999999999999998765322 46899999999999999999999999999999998653 2345
Q ss_pred cccCC--CCcceeeEEeechhhHHHHHHhhccCCCc
Q 018233 188 SMTAS--HEGVKVHAIFVSLETGVYLKEHARGETGE 221 (359)
Q Consensus 188 ~m~~~--~~~i~Ip~v~i~~~~G~~L~~~~~~~~~~ 221 (359)
.|.++ ..+++||+++|++++|+.|++.++.+...
T Consensus 77 ~m~~~~~~~~i~IP~v~Is~~dG~~L~~~l~~g~~~ 112 (118)
T cd02127 77 EMIQDDSSRRADIPAAFLLGKNGYMIRKTLERLGLP 112 (118)
T ss_pred EecCCCCCCCceEEEEEecHHHHHHHHHHHHcCCce
Confidence 56555 35689999999999999999988776543
No 6
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=99.86 E-value=4.1e-21 Score=163.86 Aligned_cols=111 Identities=21% Similarity=0.299 Sum_probs=91.0
Q ss_pred cccccccccCCCCeeEEEeeC---CCCCCCCCCCCCCCCCCCCcceEEEEEcCCCChHHHHHHHHHcCCcEEEEecccC-
Q 018233 107 LPAKFAVDVNSSGTCGALHVA---DPADACSPLSNPVASNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDRE- 182 (359)
Q Consensus 107 ~~A~FG~~~~~~~~~g~L~~~---~p~~aC~~~~~~~~~~~~~~~~ivLV~RG~CsF~~K~~~Aq~aGA~avIi~n~~~- 182 (359)
.+|+||.+++..++.|.|+.+ ++.+||+++++... .....++||||+||+|+|.+|++|||++||++|||||+.+
T Consensus 18 ~~a~fg~~~~~~~~~G~l~~~~~~~~~~gC~~~~~~~~-~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~~~ 96 (138)
T cd02122 18 ESGRYGEHSPKEEAKGLVVVPDPPNDHYGCDPDTRFPI-PPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNPGT 96 (138)
T ss_pred cccccCCCCCCCccEEEEecCCCCCCcCCCCCCccccC-CccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCC
Confidence 389999999999999998654 45799999985211 1234789999999999999999999999999999999976
Q ss_pred ccccccccCCCCcceeeEEeechhhHHHHHHhhccCC
Q 018233 183 KGSLVSMTASHEGVKVHAIFVSLETGVYLKEHARGET 219 (359)
Q Consensus 183 ~~~~~~m~~~~~~i~Ip~v~i~~~~G~~L~~~~~~~~ 219 (359)
....+.|..+. ...||+++|++.+|+.|++.++.+.
T Consensus 97 ~~~~~~m~~~~-~~~ip~v~Is~~~G~~l~~~l~~G~ 132 (138)
T cd02122 97 GNETVKMSHPG-TGDIVAIMITNPKGMEILELLERGI 132 (138)
T ss_pred CCceeeccCCC-CCcceEEEEcHHHHHHHHHHHHcCC
Confidence 34456665443 3489999999999999999887654
No 7
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.85 E-value=7.1e-21 Score=162.88 Aligned_cols=112 Identities=23% Similarity=0.401 Sum_probs=93.6
Q ss_pred ccccccccccccccccCC---CCeeEEEeeCCCCCCCCCCCCCCCCCCCCcceEEEEEcCCCChHHHHHHHHHcCCcEEE
Q 018233 100 LSLHFPDLPAKFAVDVNS---SGTCGALHVADPADACSPLSNPVASNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAI 176 (359)
Q Consensus 100 ~~~~f~~~~A~FG~~~~~---~~~~g~L~~~~p~~aC~~~~~~~~~~~~~~~~ivLV~RG~CsF~~K~~~Aq~aGA~avI 176 (359)
...+|.+.+|.||..++. .++.+.|+.++|.+||++++++ ..++|+||+||+|+|.+|++|||++||++||
T Consensus 15 ~~~~~~~~~a~FG~~~p~~~~~~~~~~lv~~~~~~gC~~~~~~------~~g~IvLV~RG~C~F~~K~~nA~~aGA~avI 88 (139)
T cd02132 15 EGDELVGVTARFGASLPSKEDNANKTRAVLANPLDCCSPSTSK------LSGSIALVERGECAFTEKAKIAEAGGASALL 88 (139)
T ss_pred cccEEEeeccccCCCCCCcccCccEEEEEECCcccccCCCCcc------cCCeEEEEECCCCCHHHHHHHHHHcCCcEEE
Confidence 456899999999998865 3678899999999999998631 3679999999999999999999999999999
Q ss_pred EecccCccccccccCC----CCcceeeEEeechhhHHHHHHhhccCC
Q 018233 177 VYNDREKGSLVSMTAS----HEGVKVHAIFVSLETGVYLKEHARGET 219 (359)
Q Consensus 177 i~n~~~~~~~~~m~~~----~~~i~Ip~v~i~~~~G~~L~~~~~~~~ 219 (359)
|||+.+. +..|... ...+.||+++|++++|+.|++.++.+.
T Consensus 89 v~n~~~~--~~~~~~~~~~~~~~~~IP~v~Is~~~G~~L~~~l~~g~ 133 (139)
T cd02132 89 IINDQEE--LYKMVCEDNDTSLNISIPVVMIPQSAGDALNKSLDQGK 133 (139)
T ss_pred EEECCCc--ccccccCCCCCCCCCcEeEEEecHHHHHHHHHHHHcCC
Confidence 9998653 4455432 125799999999999999999887654
No 8
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=99.83 E-value=2.5e-20 Score=154.70 Aligned_cols=104 Identities=29% Similarity=0.365 Sum_probs=83.4
Q ss_pred cccccccccCCCCeeEEEeeCCCCCCCCCCCCCCCCCCCCcceEEEEEcCCCChHHHHHHHHHcCCcEEEEecccCcccc
Q 018233 107 LPAKFAVDVNSSGTCGALHVADPADACSPLSNPVASNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREKGSL 186 (359)
Q Consensus 107 ~~A~FG~~~~~~~~~g~L~~~~p~~aC~~~~~~~~~~~~~~~~ivLV~RG~CsF~~K~~~Aq~aGA~avIi~n~~~~~~~ 186 (359)
.-|.||++++.+ +.+.. .++|.+||++++. . ...++||||+||+|+|.+|++|||++||++|||||+.+.+.+
T Consensus 6 ~~~~~~~~~~~~-~~~~~-~~~p~~gC~~~~~-~----~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~ 78 (117)
T cd04813 6 RYASFSPILNPH-LRGSY-KVSPTDACSLQEH-A----EIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGL 78 (117)
T ss_pred cccccCCccCcc-ccccc-cCCCCCCCCCCCc-C----CcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCcccc
Confidence 458899998876 33222 2788999998842 2 247899999999999999999999999999999998765555
Q ss_pred ccccC--CCCcceeeEEeechhhHHHHHHhhcc
Q 018233 187 VSMTA--SHEGVKVHAIFVSLETGVYLKEHARG 217 (359)
Q Consensus 187 ~~m~~--~~~~i~Ip~v~i~~~~G~~L~~~~~~ 217 (359)
..|.. +..+++||+++|++++|+.|+.++..
T Consensus 79 ~~m~~~~~~~~v~IPav~Is~~~g~~L~~l~~~ 111 (117)
T cd04813 79 ITMFSNGDTDNVTIPAMFTSRTSYHLLSSLLPK 111 (117)
T ss_pred eecccCCCCCCcEEEEEEEcHHHHHHHHHhccc
Confidence 55653 34568999999999999999987644
No 9
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.80 E-value=2e-19 Score=149.22 Aligned_cols=95 Identities=18% Similarity=0.225 Sum_probs=75.3
Q ss_pred eeEEEeeCCCCCCCCCCCCCCCCCCCCcceEEEEEcCCCChHHHHHHHHHcCCcEEEEecccCccccccccCCCCcceee
Q 018233 120 TCGALHVADPADACSPLSNPVASNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREKGSLVSMTASHEGVKVH 199 (359)
Q Consensus 120 ~~g~L~~~~p~~aC~~~~~~~~~~~~~~~~ivLV~RG~CsF~~K~~~Aq~aGA~avIi~n~~~~~~~~~m~~~~~~i~Ip 199 (359)
..-+|+.++|..||++.+.++. ...++|+||+||+|+|.+|++|||++||+|||||||.+........++...++||
T Consensus 20 ~~~~~~~~~~~~gC~~~~~~~~---~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~IP 96 (120)
T cd02129 20 TLLPLRNLTSSVLCSASDVPPG---GLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDIP 96 (120)
T ss_pred cceeeecCCCcCCCCccccCcc---ccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCccc
Confidence 3446888999999998875332 2478999999999999999999999999999999987532211112223568999
Q ss_pred EEeechhhHHHHHHhhcc
Q 018233 200 AIFVSLETGVYLKEHARG 217 (359)
Q Consensus 200 ~v~i~~~~G~~L~~~~~~ 217 (359)
++||++++|+.|++.+.+
T Consensus 97 ~v~Is~~dG~~i~~~l~~ 114 (120)
T cd02129 97 VALLSYKDMLDIQQTFGD 114 (120)
T ss_pred EEEEeHHHHHHHHHHhcc
Confidence 999999999999997764
No 10
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=99.78 E-value=2.4e-18 Score=143.10 Aligned_cols=107 Identities=28% Similarity=0.373 Sum_probs=90.5
Q ss_pred ccccccccCC---CCeeEEEeeCCCCCCCCCCCCCCCCCCCCcceEEEEEcCCCChHHHHHHHHHcCCcEEEEecccCcc
Q 018233 108 PAKFAVDVNS---SGTCGALHVADPADACSPLSNPVASNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREKG 184 (359)
Q Consensus 108 ~A~FG~~~~~---~~~~g~L~~~~p~~aC~~~~~~~~~~~~~~~~ivLV~RG~CsF~~K~~~Aq~aGA~avIi~n~~~~~ 184 (359)
+|.||+.++. ..+.|.|+.++|.++|++..... ...++|+|++||+|+|.+|+++|+++||+++||||+.+..
T Consensus 2 ~a~fg~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~----~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~ 77 (118)
T cd04818 2 SAGFGPALTNVTADVVLAGAAPASNTDGCTAFTNAA----AFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAGG 77 (118)
T ss_pred CcccCCcCccccccceeEEEecCCcccccCCCCcCC----CCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCCC
Confidence 7999998885 56889999999999999987422 2478999999999999999999999999999999987654
Q ss_pred ccccccCCCCcceeeEEeechhhHHHHHHhhccC
Q 018233 185 SLVSMTASHEGVKVHAIFVSLETGVYLKEHARGE 218 (359)
Q Consensus 185 ~~~~m~~~~~~i~Ip~v~i~~~~G~~L~~~~~~~ 218 (359)
....|..+.....||+++|++++|+.|+++++.+
T Consensus 78 ~~~~~~~~~~~~~iP~v~V~~~~g~~l~~~l~~g 111 (118)
T cd04818 78 APITMGGDDPDITIPAVMISQADGDALKAALAAG 111 (118)
T ss_pred cceeccCCCCCCEEeEEEecHHHHHHHHHHHhcC
Confidence 4445555444578999999999999999998754
No 11
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.75 E-value=1.6e-17 Score=139.07 Aligned_cols=109 Identities=23% Similarity=0.318 Sum_probs=86.9
Q ss_pred ccccccccCCCCeeEEEeeCCC--CCCCCCCCCCCCCCCCCcceEEEEEcCCCChHHHHHHHHHcCCcEEEEecccCccc
Q 018233 108 PAKFAVDVNSSGTCGALHVADP--ADACSPLSNPVASNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREKGS 185 (359)
Q Consensus 108 ~A~FG~~~~~~~~~g~L~~~~p--~~aC~~~~~~~~~~~~~~~~ivLV~RG~CsF~~K~~~Aq~aGA~avIi~n~~~~~~ 185 (359)
...|++..+..+++|.|++.++ .+||++.+.+.. ..+++||||+||+|+|.+|+++||++||+++||||+.+...
T Consensus 5 ~~~~~~~~~~~gi~~~lv~~~~~~~~gC~~~~~~~~---~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~ 81 (122)
T cd04816 5 SLSYSPSTPPGGVTAPLVPLDPERPAGCDASDYDGL---DVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGG 81 (122)
T ss_pred EEeccCCCCCCCcEEEEEEcCCCCccCCCccccCCC---CcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCcc
Confidence 4568888888999999998765 489998754321 24789999999999999999999999999999999876332
Q ss_pred cccccCC-CCcceeeEEeechhhHHHHHHhhccCC
Q 018233 186 LVSMTAS-HEGVKVHAIFVSLETGVYLKEHARGET 219 (359)
Q Consensus 186 ~~~m~~~-~~~i~Ip~v~i~~~~G~~L~~~~~~~~ 219 (359)
...+..+ .....||+++|++++|+.|+++++.+.
T Consensus 82 ~~~~~~~~~~~~~iP~~~Is~~~G~~l~~~l~~g~ 116 (122)
T cd04816 82 TAGTLGAPNIDLKVPVGVITKAAGAALRRRLGAGE 116 (122)
T ss_pred ccccccCCCCCCeeeEEEEcHHHHHHHHHHHcCCC
Confidence 2222222 255789999999999999999987764
No 12
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=99.72 E-value=5.4e-17 Score=135.82 Aligned_cols=97 Identities=32% Similarity=0.387 Sum_probs=77.0
Q ss_pred CCeeEEEeeCCCCCCCCCCCCCCCCCCCCcceEEEEEcCCCChHHHHHHHHHcCCcEEEEecccCccccccccCCCCcce
Q 018233 118 SGTCGALHVADPADACSPLSNPVASNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREKGSLVSMTASHEGVK 197 (359)
Q Consensus 118 ~~~~g~L~~~~p~~aC~~~~~~~~~~~~~~~~ivLV~RG~CsF~~K~~~Aq~aGA~avIi~n~~~~~~~~~m~~~~~~i~ 197 (359)
++.+|+|++.. .+||++.+.+. ...++||||+||+|+|.+|+++||++||++|||||+.+........++..+..
T Consensus 20 ~~~~g~lv~~~-~~gC~~~~~~~----~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~ 94 (122)
T cd02130 20 GEVTGPLVVVP-NLGCDAADYPA----SVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPY 94 (122)
T ss_pred CCcEEEEEEeC-CCCCCcccCCc----CCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCE
Confidence 45679999864 58999876432 24789999999999999999999999999999999873222222333344678
Q ss_pred eeEEeechhhHHHHHHhhccCC
Q 018233 198 VHAIFVSLETGVYLKEHARGET 219 (359)
Q Consensus 198 Ip~v~i~~~~G~~L~~~~~~~~ 219 (359)
||+++|++++|+.|++.++.++
T Consensus 95 Ip~v~Is~~~G~~L~~~l~~g~ 116 (122)
T cd02130 95 VPTVGISQEDGKALVAALANGG 116 (122)
T ss_pred eeEEEecHHHHHHHHHHHhcCC
Confidence 9999999999999999887764
No 13
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=5.7e-18 Score=156.61 Aligned_cols=53 Identities=40% Similarity=1.058 Sum_probs=48.5
Q ss_pred CCCcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCC
Q 018233 296 HGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRN 348 (359)
Q Consensus 296 ~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (359)
....+|+|||++|-.+|++++|||+|.||..|++.|+..++..||+||.++++
T Consensus 321 ~~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 321 DKGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CCCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 34579999999999999999999999999999999999767679999999876
No 14
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.64 E-value=1.9e-15 Score=128.71 Aligned_cols=101 Identities=21% Similarity=0.195 Sum_probs=76.0
Q ss_pred ccccccCCCCeeEEEeeCCCCCCCCCCCCCCCCCCCCcceEEEEEcCCCC-----hHHHHHHHHHcCCcEEEEecccCcc
Q 018233 110 KFAVDVNSSGTCGALHVADPADACSPLSNPVASNDADHINFVLIVRGQCI-----FEDKIRNAQAAGYRAAIVYNDREKG 184 (359)
Q Consensus 110 ~FG~~~~~~~~~g~L~~~~p~~aC~~~~~~~~~~~~~~~~ivLV~RG~Cs-----F~~K~~~Aq~aGA~avIi~n~~~~~ 184 (359)
.|-...+.+.++|+|+.... .+|+-.. ....++|+||+||+|+ |.+|+++||++||+|||||||.+++
T Consensus 26 ~~~s~~~~g~~tg~lv~~g~-~g~d~~~------~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~ 98 (139)
T cd04817 26 SYASMPVTGSATGSLYYCGT-SGGSYIC------GGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALA 98 (139)
T ss_pred cccccccCCcceEEEEEccC-CCccccC------CCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCC
Confidence 34445556678899987765 3473211 1236899999999999 9999999999999999999997332
Q ss_pred c-cccccCCC-CcceeeEEeechhhHHHHHHhhcc
Q 018233 185 S-LVSMTASH-EGVKVHAIFVSLETGVYLKEHARG 217 (359)
Q Consensus 185 ~-~~~m~~~~-~~i~Ip~v~i~~~~G~~L~~~~~~ 217 (359)
. +..+.++. .+++||+++|++++|+.|++.+..
T Consensus 99 g~~~~~lg~~~~~~~IP~v~is~~dG~~L~~~l~~ 133 (139)
T cd04817 99 GLQNPFLVDTNNDTTIPSVSVDRADGQALLAALGQ 133 (139)
T ss_pred CcccccccCCCCCceEeEEEeeHHHHHHHHHHhcC
Confidence 2 22333443 368999999999999999997754
No 15
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=99.63 E-value=1.3e-16 Score=134.80 Aligned_cols=118 Identities=29% Similarity=0.431 Sum_probs=94.7
Q ss_pred EEEcc--ccccccccccc-cccccCCCCeeEEEeeCCCCCCCCCCCCCCCCCCCCcceEEEEEcCCCChHHHHHHHHHcC
Q 018233 95 LVWKP--LSLHFPDLPAK-FAVDVNSSGTCGALHVADPADACSPLSNPVASNDADHINFVLIVRGQCIFEDKIRNAQAAG 171 (359)
Q Consensus 95 vv~~~--~~~~f~~~~A~-FG~~~~~~~~~g~L~~~~p~~aC~~~~~~~~~~~~~~~~ivLV~RG~CsF~~K~~~Aq~aG 171 (359)
.+.+| ..++|...+|. ||..++..--.-.||.++|..||+.+.|.... .+.|+|++||+|||..|.+++|++|
T Consensus 36 ~vlsP~~l~Yty~~~pAkdfG~~F~~r~e~~~lV~adPp~aC~elrN~~f~----~d~vaL~eRGeCSFl~Ktl~~e~aG 111 (193)
T KOG3920|consen 36 TVLSPYTLAYTYQMKPAKDFGVHFPDRFENLELVLADPPHACEELRNEIFA----PDSVALMERGECSFLVKTLNGEKAG 111 (193)
T ss_pred EecCcccEEEEEEecchhhhccccchhhcCcceeecCChhHHHHHhhcccC----CCcEEEEecCCceeeehhhhhhhcC
Confidence 35666 67788888888 99988875444579999999999999875543 3589999999999999999999999
Q ss_pred CcEEEEecccCccc----cccccCCC--CcceeeEEeechhhHHHHHHhhc
Q 018233 172 YRAAIVYNDREKGS----LVSMTASH--EGVKVHAIFVSLETGVYLKEHAR 216 (359)
Q Consensus 172 A~avIi~n~~~~~~----~~~m~~~~--~~i~Ip~v~i~~~~G~~L~~~~~ 216 (359)
|.++||.|+..++. .+.|..|+ .+.+||++++-..+|..++.-++
T Consensus 112 a~aiiitd~~~~~~sf~~YveMI~D~sq~~AniPa~fllg~~Gy~ir~sL~ 162 (193)
T KOG3920|consen 112 ATAIIITDSQNYEYSFHQYVEMIPDESQDRANIPAVFLLGVTGYYIRVSLK 162 (193)
T ss_pred ceEEEEecCCCCchhHHHHHHhcCcccccccCCceEEEeccceEEEehhHH
Confidence 99999998765433 45666553 45799999999999987766443
No 16
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.59 E-value=8.6e-15 Score=123.63 Aligned_cols=90 Identities=26% Similarity=0.368 Sum_probs=68.0
Q ss_pred EEeeCCCCCCCCCCCCCCCCCCCCcceEEEEEcCCCChHHHHHHHHHcCCcEEEEecccCccccccccCCCCcceeeEEe
Q 018233 123 ALHVADPADACSPLSNPVASNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREKGSLVSMTASHEGVKVHAIF 202 (359)
Q Consensus 123 ~L~~~~p~~aC~~~~~~~~~~~~~~~~ivLV~RG~CsF~~K~~~Aq~aGA~avIi~n~~~~~~~~~m~~~~~~i~Ip~v~ 202 (359)
.+..+++.+||++++.+. + ...++||||+||+|+|.+|++|||++||++|||||+.++. . .+..... ..+|.++
T Consensus 34 ~~~~~~~~~gC~~~~~~~-~--~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~-~-~~~~~~~-~~~~~~~ 107 (129)
T cd02124 34 SLDTSVADDACQPLPDDT-P--DLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGP-T-DQVGSDA-DSIIAAV 107 (129)
T ss_pred ecccCCCcccCcCCCccc-c--cccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCc-c-cccCCCC-cceeeEE
Confidence 345567889999986432 2 2478999999999999999999999999999999987542 2 2333322 3455555
Q ss_pred echhhHHHHHHhhccCC
Q 018233 203 VSLETGVYLKEHARGET 219 (359)
Q Consensus 203 i~~~~G~~L~~~~~~~~ 219 (359)
+ +++|+.|++.++.+.
T Consensus 108 ~-~~~G~~l~~~l~~G~ 123 (129)
T cd02124 108 T-PEDGEAWIDALAAGS 123 (129)
T ss_pred e-HHHHHHHHHHHhcCC
Confidence 6 999999999887653
No 17
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=99.58 E-value=1.5e-15 Score=122.09 Aligned_cols=95 Identities=28% Similarity=0.456 Sum_probs=65.8
Q ss_pred CCeeEEEeeCCCC---CCCCCCCCCCCCCCCCcceEEEEEcCCCChHHHHHHHHHcCCcEEEEecccCccccccccCCCC
Q 018233 118 SGTCGALHVADPA---DACSPLSNPVASNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREKGSLVSMTASHE 194 (359)
Q Consensus 118 ~~~~g~L~~~~p~---~aC~~~~~~~~~~~~~~~~ivLV~RG~CsF~~K~~~Aq~aGA~avIi~n~~~~~~~~~m~~~~~ 194 (359)
....|+|+.+.+. ..|.+.+... ...+++||||+||+|+|.+|+++||++||+|+||+|+.+............
T Consensus 4 ~~~~~~lV~~~~~~~~~~~~~~~~~~---~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~ 80 (101)
T PF02225_consen 4 GTVTGPLVPAGNGIDEGDCCPSDYNG---SDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPD 80 (101)
T ss_dssp EEEEEEEEEETTEEECCHHHHHHTST---STCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTT
T ss_pred CCEEEEEEEecCCCCcccccccccCC---ccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCC
Confidence 4567888844332 3333332222 234789999999999999999999999999999999322222222233445
Q ss_pred cceeeEEeechhhHHHHHHhh
Q 018233 195 GVKVHAIFVSLETGVYLKEHA 215 (359)
Q Consensus 195 ~i~Ip~v~i~~~~G~~L~~~~ 215 (359)
...||+++|++++|+.|++++
T Consensus 81 ~~~iP~v~I~~~~g~~L~~~i 101 (101)
T PF02225_consen 81 PIDIPVVFISYEDGEALLAYI 101 (101)
T ss_dssp STBSEEEEE-HHHHHHHHHHH
T ss_pred CcEEEEEEeCHHHHhhhhccC
Confidence 689999999999999999864
No 18
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.56 E-value=1.6e-15 Score=104.05 Aligned_cols=44 Identities=50% Similarity=1.241 Sum_probs=40.0
Q ss_pred cccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCcc
Q 018233 299 ETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCK 343 (359)
Q Consensus 299 ~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR 343 (359)
++|+||+++|+.++.+..|+|+|.||.+||.+|++.+. +||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~-~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNN-SCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSS-B-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCC-cCCccC
Confidence 58999999999999999999999999999999999976 599997
No 19
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=99.46 E-value=1.3e-13 Score=135.32 Aligned_cols=142 Identities=24% Similarity=0.398 Sum_probs=97.2
Q ss_pred cccccccccccccCCCCe---eEEEeeCCCCCCCCCCCCCCCCCCCCcceEEEEEcCCCChHHHHHHHHHcCCcEEEEec
Q 018233 103 HFPDLPAKFAVDVNSSGT---CGALHVADPADACSPLSNPVASNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYN 179 (359)
Q Consensus 103 ~f~~~~A~FG~~~~~~~~---~g~L~~~~p~~aC~~~~~~~~~~~~~~~~ivLV~RG~CsF~~K~~~Aq~aGA~avIi~n 179 (359)
.|....++||..+++..- .=.+...+|.|-|++++++- ++++++|.||+|+|.+|+++||++||.|++|.|
T Consensus 54 ~~a~~~~~~~~t~~~~~~~a~~~~~a~~~pld~cs~~~~kl------~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin 127 (541)
T KOG2442|consen 54 EFAGMLARFGITLPSKCKAADIPHLAQVDPLDSCSTLQSKL------SGKVALVFRGNCSFTEKAKLAQAAGASALLIIN 127 (541)
T ss_pred hhhhhhhhcCCcCCCCccccccchhhhcCCccccCCCCccc------cceeEEEecccceeehhhhhhhhcCceEEEEEc
Confidence 345567889986654321 22344668999999876433 459999999999999999999999999999999
Q ss_pred ccCccccccccCC----CCcceeeEEeechhhHHHHHHhhcc-CCCceeecCCCCCccccceeeeehhHHHHHHHhhhhc
Q 018233 180 DREKGSLVSMTAS----HEGVKVHAIFVSLETGVYLKEHARG-ETGECCIFPESNRGSWSVLMVSVFSLIVVFALFAVAF 254 (359)
Q Consensus 180 ~~~~~~~~~m~~~----~~~i~Ip~v~i~~~~G~~L~~~~~~-~~~~v~I~~~~~~~~~~~m~IsfiillvIiavlli~~ 254 (359)
|.. ++.-|... ..+++||++||++++|+.|.+.... .++++.+..+ ..+-..+.+.|+.+|.+.++.+..|
T Consensus 128 ~~~--d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~V~~~lYaP--k~P~vD~~~v~iwlmAVgTVa~ggy 203 (541)
T KOG2442|consen 128 NKK--DLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSNDNVELALYAP--KRPAVDYAMVFIWLMAVGTVACGGY 203 (541)
T ss_pred Cch--hhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCCeEEEEEECC--CCCCccHHHHHHHHHHHhHhhccch
Confidence 864 33344432 2469999999999999999985443 3344433332 2223344555555566655555433
No 20
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=99.40 E-value=1.2e-12 Score=109.00 Aligned_cols=92 Identities=27% Similarity=0.390 Sum_probs=69.4
Q ss_pred eCCCCCCCCCCCCCCCCCCCCcceEEEEEcCCCChHHHHHHHHHcCCcEEEEecccCccccccccCC---CCcceeeEEe
Q 018233 126 VADPADACSPLSNPVASNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREKGSLVSMTAS---HEGVKVHAIF 202 (359)
Q Consensus 126 ~~~p~~aC~~~~~~~~~~~~~~~~ivLV~RG~CsF~~K~~~Aq~aGA~avIi~n~~~~~~~~~m~~~---~~~i~Ip~v~ 202 (359)
...+.++|++... ........++|||++||+|+|.+|+++||++||+|+||+|+.+... ..+... .....||+++
T Consensus 26 ~~~~~~~C~~~~~-~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~-~~~~~~~~~~~~~~iP~~~ 103 (126)
T cd00538 26 VAGPLVGCGYGTT-DDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPG-PQMGSVGLESTDPSIPTVG 103 (126)
T ss_pred cccceEEEecCcc-cccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcc-cccccccCCCCCCcEeEEE
Confidence 3456789988752 1111234789999999999999999999999999999999875321 222211 2456899999
Q ss_pred echhhHHHHHHhhccCC
Q 018233 203 VSLETGVYLKEHARGET 219 (359)
Q Consensus 203 i~~~~G~~L~~~~~~~~ 219 (359)
|++++|+.|+++++.+.
T Consensus 104 is~~~g~~l~~~~~~~~ 120 (126)
T cd00538 104 ISYADGEALLSLLEAGK 120 (126)
T ss_pred eCHHHHHHHHHHHhcCC
Confidence 99999999999887643
No 21
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.36 E-value=9.2e-12 Score=107.03 Aligned_cols=100 Identities=28% Similarity=0.270 Sum_probs=73.9
Q ss_pred cccccccCCCCeeEEEeeCCCCCCCCCCCCCCCCCCCCcceEEEEEcCCCChHHHHHHHHHcCCcEEEEecccCcccccc
Q 018233 109 AKFAVDVNSSGTCGALHVADPADACSPLSNPVASNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREKGSLVS 188 (359)
Q Consensus 109 A~FG~~~~~~~~~g~L~~~~p~~aC~~~~~~~~~~~~~~~~ivLV~RG~CsF~~K~~~Aq~aGA~avIi~n~~~~~~~~~ 188 (359)
..++.+.+.....+.|++... |.+-+... ....++|||++||+|+|.+|+++||++||++|||||+.++. ..
T Consensus 15 ~~~~~~~~~~~~~~~lv~~g~---g~~~d~~~---~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~--~~ 86 (143)
T cd02133 15 AFSGNPTDLLGKTYELVDAGL---GTPEDFEG---KDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGL--IP 86 (143)
T ss_pred ccCCCcCCCCCcEEEEEEccC---CchhccCC---CCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCc--cc
Confidence 445555566678888887632 23322111 22478999999999999999999999999999999987532 22
Q ss_pred ccCCCCcceeeEEeechhhHHHHHHhhcc
Q 018233 189 MTASHEGVKVHAIFVSLETGVYLKEHARG 217 (359)
Q Consensus 189 m~~~~~~i~Ip~v~i~~~~G~~L~~~~~~ 217 (359)
+..+. ...||+++|++++|+.|+++++.
T Consensus 87 ~~~~~-~~~iP~v~Is~~dG~~L~~~l~~ 114 (143)
T cd02133 87 GTLGE-AVFIPVVFISKEDGEALKAALES 114 (143)
T ss_pred ccCCC-CCeEeEEEecHHHHHHHHHHHhC
Confidence 32222 35799999999999999998866
No 22
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.29 E-value=2.7e-12 Score=97.74 Aligned_cols=45 Identities=36% Similarity=0.874 Sum_probs=35.9
Q ss_pred CcccccccccccCC----------CceEEecCCCcccHHHHHHHHhcCCCCCCCcc
Q 018233 298 GETCAICLEDYQDG----------EKLKVLSCKHEFHASCVDSWLTKWGTFCPVCK 343 (359)
Q Consensus 298 ~~~C~ICLe~f~~~----------~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR 343 (359)
++.|+||+++|.+. -.+...+|||.||..||.+||+.++ +||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~-~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNN-TCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSS-B-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCC-cCCCCC
Confidence 55799999999322 3456668999999999999999977 599998
No 23
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.28 E-value=1.9e-12 Score=119.41 Aligned_cols=74 Identities=27% Similarity=0.584 Sum_probs=53.5
Q ss_pred ccchhhhhccceeeeccCCCcCCCCCcccccccccccCCC----ce-EEecCCCcccHHHHHHHHhcCCCCCCCccccCC
Q 018233 273 RLDSKVVEALPCFLFSSASSSQCHGGETCAICLEDYQDGE----KL-KVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMR 347 (359)
Q Consensus 273 ~l~~~~i~~lp~~~~~~~~~~~~~~~~~C~ICLe~f~~~~----~v-r~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~ 347 (359)
+..+..++.+|....+-........+.+|+||++++.+.+ .+ ..++|+|.||.+||.+|+..+. +||+||..+.
T Consensus 149 ~~~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~-tCPlCR~~~~ 227 (238)
T PHA02929 149 KNYKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKN-TCPVCRTPFI 227 (238)
T ss_pred chhHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCC-CCCCCCCEee
Confidence 3456667777776544322222345789999999987653 12 3446999999999999999866 5999999875
No 24
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=99.20 E-value=1.4e-10 Score=97.83 Aligned_cols=98 Identities=20% Similarity=0.045 Sum_probs=70.7
Q ss_pred CCCeeEEEeeCCCCCCCCCCCCCCCCCCCCcceEEEEEcCCC--ChHHHHHHHHHcCCcEEEEecccCcccccccc-CC-
Q 018233 117 SSGTCGALHVADPADACSPLSNPVASNDADHINFVLIVRGQC--IFEDKIRNAQAAGYRAAIVYNDREKGSLVSMT-AS- 192 (359)
Q Consensus 117 ~~~~~g~L~~~~p~~aC~~~~~~~~~~~~~~~~ivLV~RG~C--sF~~K~~~Aq~aGA~avIi~n~~~~~~~~~m~-~~- 192 (359)
...++|+|++... | .+-+.. ..+..++||||+||.| +|..|+++|+++||+||||||+.++....... +.
T Consensus 20 ~~~~~~~lV~~g~--G-~~~d~~---~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~ 93 (127)
T cd04819 20 SGEAKGEPVDAGY--G-LPKDFD---GLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTE 93 (127)
T ss_pred CCCeeEEEEEeCC--C-CHHHcC---CCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCccccccccc
Confidence 3457888887642 2 221111 1125789999999999 99999999999999999999876543211111 11
Q ss_pred -CCcceeeEEeechhhHHHHHHhhccCCC
Q 018233 193 -HEGVKVHAIFVSLETGVYLKEHARGETG 220 (359)
Q Consensus 193 -~~~i~Ip~v~i~~~~G~~L~~~~~~~~~ 220 (359)
.....||++.|+.+||+.|+++++.++.
T Consensus 94 ~~~~~~IP~v~Is~edg~~L~~~l~~g~~ 122 (127)
T cd04819 94 DGPPSPIPAASVSGEDGLRLARVAERNDT 122 (127)
T ss_pred CCCCCCCCEEEEeHHHHHHHHHHHhcCCc
Confidence 2346899999999999999999887553
No 25
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=7.8e-12 Score=118.97 Aligned_cols=70 Identities=24% Similarity=0.652 Sum_probs=52.1
Q ss_pred chhhhhccceeeeccCCCcCCCCCccccccccc-ccCCC---------ceEEecCCCcccHHHHHHHHhcCCCCCCCccc
Q 018233 275 DSKVVEALPCFLFSSASSSQCHGGETCAICLED-YQDGE---------KLKVLSCKHEFHASCVDSWLTKWGTFCPVCKH 344 (359)
Q Consensus 275 ~~~~i~~lp~~~~~~~~~~~~~~~~~C~ICLe~-f~~~~---------~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~ 344 (359)
.++.-+.+|+....+. ..++..|.||+++ |+.+. +-+.|||||+||-+|+..|++++++ ||+||.
T Consensus 268 ~kdl~~~~~t~t~eql----~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQT-CPICr~ 342 (491)
T COG5243 268 TKDLNAMYPTATEEQL----TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQT-CPICRR 342 (491)
T ss_pred hhHHHhhcchhhhhhh----cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccC-CCcccC
Confidence 3444455565555443 3357799999999 55552 2378999999999999999999996 999999
Q ss_pred cCCCC
Q 018233 345 DMRNN 349 (359)
Q Consensus 345 ~i~~~ 349 (359)
++.-+
T Consensus 343 p~ifd 347 (491)
T COG5243 343 PVIFD 347 (491)
T ss_pred ccccc
Confidence 96443
No 26
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=99.05 E-value=4.1e-10 Score=95.79 Aligned_cols=105 Identities=16% Similarity=0.103 Sum_probs=75.3
Q ss_pred ccccccCCCCeeEEEeeCCCCCCCCCCCCCCCCCCCCcceEEEEEcCCC------ChHHH-------HHHHHHcCCcEEE
Q 018233 110 KFAVDVNSSGTCGALHVADPADACSPLSNPVASNDADHINFVLIVRGQC------IFEDK-------IRNAQAAGYRAAI 176 (359)
Q Consensus 110 ~FG~~~~~~~~~g~L~~~~p~~aC~~~~~~~~~~~~~~~~ivLV~RG~C------sF~~K-------~~~Aq~aGA~avI 176 (359)
.|++..++.+++|+|+.....+ .+..- +.....++||||+||.| +|..| +++|+++||.|+|
T Consensus 7 ~~s~~t~~~gvta~vv~v~~~~---~~~~~--~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avI 81 (134)
T cd04815 7 GGSVATPPEGITAEVVVVKSFD---ELKAA--PAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVL 81 (134)
T ss_pred CCCCCCCCCCcEEEEEEECCHH---HHHhc--chhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEE
Confidence 3555566677999998765322 22211 11235789999999999 99999 7999999999999
Q ss_pred EecccCcc---ccccccCC-CCcceeeEEeechhhHHHHHHhhccCC
Q 018233 177 VYNDREKG---SLVSMTAS-HEGVKVHAIFVSLETGVYLKEHARGET 219 (359)
Q Consensus 177 i~n~~~~~---~~~~m~~~-~~~i~Ip~v~i~~~~G~~L~~~~~~~~ 219 (359)
|+|+.+.. ....+.+. +....||++.|+.+||+.|..+++.++
T Consensus 82 v~s~~~~~~~~~~~G~~~~~~~~~~IP~v~is~ed~~~L~r~l~~g~ 128 (134)
T cd04815 82 IRSIGTDSHRSPHTGMMSYDDGVPKIPAAAISVEDADMLERLAARGK 128 (134)
T ss_pred EEecCcccCCCCcCCccccCCCCCCCCEEEechhcHHHHHHHHhCCC
Confidence 99975332 11122222 334689999999999999999888764
No 27
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=99.02 E-value=2.5e-10 Score=77.24 Aligned_cols=45 Identities=40% Similarity=1.038 Sum_probs=37.1
Q ss_pred ccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccC
Q 018233 300 TCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDM 346 (359)
Q Consensus 300 ~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i 346 (359)
+|+||++.+ .+.+..++|+|.||.+|++.|++..+..||+||..+
T Consensus 1 ~C~iC~~~~--~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEF--REPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhh--hCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 599999998 344566679999999999999998444699999764
No 28
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=99.01 E-value=1.6e-09 Score=90.62 Aligned_cols=84 Identities=25% Similarity=0.236 Sum_probs=66.0
Q ss_pred CCCCCCCCCCCCCCCCCCcceEEEEEcCCC-ChHHHHHHHHHcCCcEEEEecccCccccccccCCCCcceeeEEeechhh
Q 018233 129 PADACSPLSNPVASNDADHINFVLIVRGQC-IFEDKIRNAQAAGYRAAIVYNDREKGSLVSMTASHEGVKVHAIFVSLET 207 (359)
Q Consensus 129 p~~aC~~~~~~~~~~~~~~~~ivLV~RG~C-sF~~K~~~Aq~aGA~avIi~n~~~~~~~~~m~~~~~~i~Ip~v~i~~~~ 207 (359)
....|++...... ...++|||.+||.| +|.+|+.+|+++||.|+|++|+.++. ..+.. ....||+++|++++
T Consensus 36 ~~~~C~~~~~~~~---~v~GkIVlc~~~~~~~~~~k~~~~~~~GA~gvI~~~~~~~~--~~~~~--~~~~iP~v~I~~~~ 108 (126)
T cd02120 36 DASLCLPGSLDPS---KVKGKIVLCDRGGNTSRVAKGDAVKAAGGAGMILANDPTDG--LDVVA--DAHVLPAVHVDYED 108 (126)
T ss_pred ccccCCCCCCChh---hccccEEEEeCCCCccHHHHHHHHHHcCCcEEEEEecCCCC--ceecc--cccccceEEECHHH
Confidence 3468987654322 24789999999999 99999999999999999999986532 12221 13579999999999
Q ss_pred HHHHHHhhccCC
Q 018233 208 GVYLKEHARGET 219 (359)
Q Consensus 208 G~~L~~~~~~~~ 219 (359)
|+.|+++++...
T Consensus 109 g~~l~~y~~~~~ 120 (126)
T cd02120 109 GTAILSYINSTS 120 (126)
T ss_pred HHHHHHHHHcCC
Confidence 999999987653
No 29
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.98 E-value=3.8e-10 Score=100.25 Aligned_cols=55 Identities=33% Similarity=0.671 Sum_probs=43.5
Q ss_pred CCCcccccccccccCCCceEEecCCCcccHHHHHHHHhc---------------CCCCCCCccccCCCCCCCc
Q 018233 296 HGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTK---------------WGTFCPVCKHDMRNNSESN 353 (359)
Q Consensus 296 ~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~---------------~~~~CPlCR~~i~~~~~~~ 353 (359)
.+..+|+||++.+++. .+++|||.||..||..|+.. ....||+||.++.......
T Consensus 16 ~~~~~CpICld~~~dP---VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvP 85 (193)
T PLN03208 16 GGDFDCNICLDQVRDP---VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVP 85 (193)
T ss_pred CCccCCccCCCcCCCc---EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEE
Confidence 3467999999998765 66899999999999999853 1236999999997654433
No 30
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=3.7e-10 Score=105.00 Aligned_cols=51 Identities=25% Similarity=0.735 Sum_probs=43.8
Q ss_pred CCCCcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCC
Q 018233 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (359)
.+....|.+|||..+.. .-+||||+||..||.+|...+.. ||+||..+.+.
T Consensus 236 ~~a~~kC~LCLe~~~~p---SaTpCGHiFCWsCI~~w~~ek~e-CPlCR~~~~ps 286 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSNP---SATPCGHIFCWSCILEWCSEKAE-CPLCREKFQPS 286 (293)
T ss_pred CCCCCceEEEecCCCCC---CcCcCcchHHHHHHHHHHccccC-CCcccccCCCc
Confidence 44567999999997666 58899999999999999999775 99999987654
No 31
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=98.95 E-value=2.1e-09 Score=95.56 Aligned_cols=112 Identities=17% Similarity=0.165 Sum_probs=76.1
Q ss_pred ccccccccccccCCCCeeEEEeeCCCCCCCCCCCCCC--CCCCCCcceEEEEEcCCCChHHHHHHHHHcCCcEEEEeccc
Q 018233 104 FPDLPAKFAVDVNSSGTCGALHVADPADACSPLSNPV--ASNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDR 181 (359)
Q Consensus 104 f~~~~A~FG~~~~~~~~~g~L~~~~p~~aC~~~~~~~--~~~~~~~~~ivLV~RG~CsF~~K~~~Aq~aGA~avIi~n~~ 181 (359)
++-.+..|.+-.+.+.++|.|++.+. | .+.+... .......++||||+||+|+|.+|+++||++||+|||||+|.
T Consensus 13 ~~l~~~~f~~~s~~G~v~g~lVyvn~--G-~~~Df~~L~~~gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp 89 (183)
T cd02128 13 LVENPGGYVAYSAAGTVTGKLVYANY--G-RKKDFEDLQSVGVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDP 89 (183)
T ss_pred eecccccccCCCCCCceEEEEEEcCC--C-CHHHHHHHHhcCCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCH
Confidence 33344556666666778999998842 3 3222210 01123578999999999999999999999999999999984
Q ss_pred Cccccc----------c-ccCC---------------C----CcceeeEEeechhhHHHHHHhhccC
Q 018233 182 EKGSLV----------S-MTAS---------------H----EGVKVHAIFVSLETGVYLKEHARGE 218 (359)
Q Consensus 182 ~~~~~~----------~-m~~~---------------~----~~i~Ip~v~i~~~~G~~L~~~~~~~ 218 (359)
.+.... . ..+| . .-..||++-|+.++++.|++.+...
T Consensus 90 ~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~~~~~lP~IPs~PIS~~da~~lL~~l~G~ 156 (183)
T cd02128 90 ADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPSQSSGLPNIPAQTISAAAAAKLLSKMGGP 156 (183)
T ss_pred HHcCcccCcceeecceeccCCCcCCCCCccccccccCcccccCCCCCCEeccCHHHHHHHHHHcCCC
Confidence 221100 0 0011 0 1147999999999999999988654
No 32
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.91 E-value=1.1e-09 Score=77.10 Aligned_cols=46 Identities=33% Similarity=0.867 Sum_probs=38.1
Q ss_pred CcccccccccccCCCceEEecCCCc-ccHHHHHHHHhcCCCCCCCccccCC
Q 018233 298 GETCAICLEDYQDGEKLKVLSCKHE-FHASCVDSWLTKWGTFCPVCKHDMR 347 (359)
Q Consensus 298 ~~~C~ICLe~f~~~~~vr~LpC~H~-FH~~CI~~Wl~~~~~~CPlCR~~i~ 347 (359)
+..|.||++.... +..+||||. |+.+|+..|++... .||+||++|.
T Consensus 2 ~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~~~~-~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRD---VVLLPCGHLCFCEECAERLLKRKK-KCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSS---EEEETTCEEEEEHHHHHHHHHTTS-BBTTTTBB-S
T ss_pred cCCCccCCccCCc---eEEeCCCChHHHHHHhHHhcccCC-CCCcCChhhc
Confidence 4689999998544 688899999 99999999999756 5999999875
No 33
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.91 E-value=9.5e-10 Score=73.29 Aligned_cols=39 Identities=41% Similarity=1.048 Sum_probs=32.9
Q ss_pred cccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCc
Q 018233 301 CAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVC 342 (359)
Q Consensus 301 C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlC 342 (359)
|+||++++.+ .+..++|||.|+.+|+.+|++.+ .+||+|
T Consensus 1 C~iC~~~~~~--~~~~~~CGH~fC~~C~~~~~~~~-~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD--PVVVTPCGHSFCKECIEKYLEKN-PKCPVC 39 (39)
T ss_dssp ETTTTSB-SS--EEEECTTSEEEEHHHHHHHHHCT-SB-TTT
T ss_pred CCCCCCcccC--cCEECCCCCchhHHHHHHHHHCc-CCCcCC
Confidence 8999999776 56789999999999999999994 469998
No 34
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=1.2e-09 Score=98.91 Aligned_cols=57 Identities=32% Similarity=0.561 Sum_probs=45.2
Q ss_pred CCCCcccccccccccCCCceEEecCCCcccHHHHHHHHhcCC--CCCCCccccCCCCCCCcc
Q 018233 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWG--TFCPVCKHDMRNNSESNE 354 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~--~~CPlCR~~i~~~~~~~~ 354 (359)
.....+|.|||+.-++. .++.|||+||..||.+||+.+. ..||+||..|..+....=
T Consensus 44 ~~~~FdCNICLd~akdP---VvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPl 102 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDP---VVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPL 102 (230)
T ss_pred CCCceeeeeeccccCCC---EEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEee
Confidence 34567999999995554 5667999999999999999853 459999999977654443
No 35
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.88 E-value=1.3e-09 Score=84.18 Aligned_cols=53 Identities=28% Similarity=0.784 Sum_probs=40.5
Q ss_pred CCccccccccccc--------CCCc--eEEecCCCcccHHHHHHHHhcC--CCCCCCccccCCCC
Q 018233 297 GGETCAICLEDYQ--------DGEK--LKVLSCKHEFHASCVDSWLTKW--GTFCPVCKHDMRNN 349 (359)
Q Consensus 297 ~~~~C~ICLe~f~--------~~~~--vr~LpC~H~FH~~CI~~Wl~~~--~~~CPlCR~~i~~~ 349 (359)
+++.|.||...|+ +||. +..-.|+|.||..||.+|+.+. +..||+||++...+
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~k 84 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKFK 84 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeeeC
Confidence 3789999999986 3332 3333599999999999999974 34699999976543
No 36
>PHA02926 zinc finger-like protein; Provisional
Probab=98.77 E-value=4.1e-09 Score=94.78 Aligned_cols=54 Identities=30% Similarity=0.766 Sum_probs=40.0
Q ss_pred CCCCcccccccccccCC----C-ceEEe-cCCCcccHHHHHHHHhcC-----CCCCCCccccCCC
Q 018233 295 CHGGETCAICLEDYQDG----E-KLKVL-SCKHEFHASCVDSWLTKW-----GTFCPVCKHDMRN 348 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~----~-~vr~L-pC~H~FH~~CI~~Wl~~~-----~~~CPlCR~~i~~ 348 (359)
.+.+.+|+||||..-+. + .--+| +|+|.||..||+.|...+ ..+||+||..+..
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~ 231 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRN 231 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeee
Confidence 44578999999986322 1 22344 699999999999999864 2359999988754
No 37
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.77 E-value=5.6e-09 Score=71.46 Aligned_cols=44 Identities=30% Similarity=0.823 Sum_probs=37.7
Q ss_pred ccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccc
Q 018233 300 TCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKH 344 (359)
Q Consensus 300 ~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~ 344 (359)
.|.||+++|.+.+..++|+|||+|+.+|+.... .....||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 499999999767778999999999999999988 33446999985
No 38
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.76 E-value=4.4e-09 Score=70.67 Aligned_cols=40 Identities=40% Similarity=1.043 Sum_probs=34.4
Q ss_pred cccccccccCCCceEEecCCCcccHHHHHHHHh-cCCCCCCCc
Q 018233 301 CAICLEDYQDGEKLKVLSCKHEFHASCVDSWLT-KWGTFCPVC 342 (359)
Q Consensus 301 C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~-~~~~~CPlC 342 (359)
|+||++.++... +.++|+|.|+.+||..|++ .....||+|
T Consensus 1 C~iC~~~~~~~~--~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV--ILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE--EETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC--EEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999987763 6889999999999999999 444569998
No 39
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=3.1e-09 Score=110.14 Aligned_cols=53 Identities=40% Similarity=0.902 Sum_probs=45.7
Q ss_pred CCCcccccccccccCCCc--eEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCC
Q 018233 296 HGGETCAICLEDYQDGEK--LKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (359)
Q Consensus 296 ~~~~~C~ICLe~f~~~~~--vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (359)
...+.|+||+|++..+++ .+.|||+|+||..|+..|+++.++ ||+||..+...
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qt-CP~CR~~~~~~ 343 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQT-CPTCRTVLYDY 343 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCc-CCcchhhhhcc
Confidence 457899999999998765 689999999999999999999775 99999955443
No 40
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.74 E-value=9.5e-09 Score=66.94 Aligned_cols=39 Identities=44% Similarity=1.054 Sum_probs=32.9
Q ss_pred cccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCc
Q 018233 301 CAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVC 342 (359)
Q Consensus 301 C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlC 342 (359)
|+||++. .+....++|+|.||..|++.|++..+..||+|
T Consensus 1 C~iC~~~---~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEE---LKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccC---CCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 7899998 34568899999999999999998444469998
No 41
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.73 E-value=8.3e-09 Score=69.91 Aligned_cols=39 Identities=36% Similarity=0.865 Sum_probs=31.3
Q ss_pred cccccccccCCCceEEecCCCcccHHHHHHHHhcCCC---CCCCc
Q 018233 301 CAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGT---FCPVC 342 (359)
Q Consensus 301 C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~---~CPlC 342 (359)
|+||++.|++. ..|+|||.|+.+||..|.+.... .||.|
T Consensus 1 CpiC~~~~~~P---v~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDP---VSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSE---EE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCc---cccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999988 78999999999999999987533 59988
No 42
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=1.2e-08 Score=88.76 Aligned_cols=54 Identities=24% Similarity=0.648 Sum_probs=43.9
Q ss_pred CCCCCcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCC
Q 018233 294 QCHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (359)
Q Consensus 294 ~~~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (359)
....-..|+|||+.+++... .-+.|||+||+.||..-++...+ ||+||..|..+
T Consensus 127 ~~~~~~~CPiCl~~~sek~~-vsTkCGHvFC~~Cik~alk~~~~-CP~C~kkIt~k 180 (187)
T KOG0320|consen 127 RKEGTYKCPICLDSVSEKVP-VSTKCGHVFCSQCIKDALKNTNK-CPTCRKKITHK 180 (187)
T ss_pred ccccccCCCceecchhhccc-cccccchhHHHHHHHHHHHhCCC-CCCcccccchh
Confidence 34556799999999887633 34679999999999999988775 99999877665
No 43
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.61 E-value=4e-08 Score=72.09 Aligned_cols=48 Identities=23% Similarity=0.482 Sum_probs=41.2
Q ss_pred cccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCCC
Q 018233 299 ETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNS 350 (359)
Q Consensus 299 ~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~ 350 (359)
-.|+||++.+++. ..++|||+|.++||.+|++.+. .||+|+..+...+
T Consensus 2 ~~Cpi~~~~~~~P---v~~~~G~v~~~~~i~~~~~~~~-~cP~~~~~~~~~~ 49 (63)
T smart00504 2 FLCPISLEVMKDP---VILPSGQTYERRAIEKWLLSHG-TDPVTGQPLTHED 49 (63)
T ss_pred cCCcCCCCcCCCC---EECCCCCEEeHHHHHHHHHHCC-CCCCCcCCCChhh
Confidence 3699999999876 5789999999999999999855 5999999885544
No 44
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=1.9e-08 Score=99.25 Aligned_cols=53 Identities=25% Similarity=0.737 Sum_probs=41.8
Q ss_pred CCCcccccccccccCC---C-----------ceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCC
Q 018233 296 HGGETCAICLEDYQDG---E-----------KLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRN 348 (359)
Q Consensus 296 ~~~~~C~ICLe~f~~~---~-----------~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (359)
....+|+|||.+++.- . ....+||+|+||..|+.+|+...+..||+||.+++.
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 3456999999886422 1 124569999999999999999777679999999874
No 45
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.46 E-value=1.5e-07 Score=65.88 Aligned_cols=43 Identities=28% Similarity=0.796 Sum_probs=33.6
Q ss_pred ccccccccccCCCceEEecCC-----CcccHHHHHHHHhcC-CCCCCCcc
Q 018233 300 TCAICLEDYQDGEKLKVLSCK-----HEFHASCVDSWLTKW-GTFCPVCK 343 (359)
Q Consensus 300 ~C~ICLe~f~~~~~vr~LpC~-----H~FH~~CI~~Wl~~~-~~~CPlCR 343 (359)
.|.||++.. .++...++||. |.+|.+||..|+..+ +.+||+|+
T Consensus 1 ~CrIC~~~~-~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEG-DEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCC-CCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 489999943 34445588984 899999999999875 34699995
No 46
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.45 E-value=1.6e-07 Score=70.96 Aligned_cols=49 Identities=33% Similarity=0.819 Sum_probs=37.0
Q ss_pred Ccccccccccc-----------cCCCceEEe--cCCCcccHHHHHHHHhcCCCCCCCccccCC
Q 018233 298 GETCAICLEDY-----------QDGEKLKVL--SCKHEFHASCVDSWLTKWGTFCPVCKHDMR 347 (359)
Q Consensus 298 ~~~C~ICLe~f-----------~~~~~vr~L--pC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~ 347 (359)
-+.|+||...| ..+++..+. -|+|.||..||..||.++. .||++|+...
T Consensus 20 id~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~-~CPld~q~w~ 81 (88)
T COG5194 20 IDVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKG-VCPLDRQTWV 81 (88)
T ss_pred cchhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCC-CCCCCCceeE
Confidence 36777777664 355554433 3999999999999999977 4999998754
No 47
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.44 E-value=1.4e-07 Score=93.27 Aligned_cols=52 Identities=23% Similarity=0.586 Sum_probs=43.7
Q ss_pred CCCCcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCCC
Q 018233 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNS 350 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~ 350 (359)
.+....|+||++.|... .+++|+|.||..||..|+.... .||+||..+....
T Consensus 23 Le~~l~C~IC~d~~~~P---vitpCgH~FCs~CI~~~l~~~~-~CP~Cr~~~~~~~ 74 (397)
T TIGR00599 23 LDTSLRCHICKDFFDVP---VLTSCSHTFCSLCIRRCLSNQP-KCPLCRAEDQESK 74 (397)
T ss_pred cccccCCCcCchhhhCc---cCCCCCCchhHHHHHHHHhCCC-CCCCCCCcccccc
Confidence 44567999999998765 4789999999999999998865 5999999876543
No 48
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=7.5e-08 Score=72.05 Aligned_cols=51 Identities=33% Similarity=0.842 Sum_probs=38.0
Q ss_pred CCccccccccccc--------CCCceEEe--cCCCcccHHHHHHHHhcC--CCCCCCccccCC
Q 018233 297 GGETCAICLEDYQ--------DGEKLKVL--SCKHEFHASCVDSWLTKW--GTFCPVCKHDMR 347 (359)
Q Consensus 297 ~~~~C~ICLe~f~--------~~~~vr~L--pC~H~FH~~CI~~Wl~~~--~~~CPlCR~~i~ 347 (359)
.+++|-||.-+|+ +||..-.+ .|.|.||..||.+|+... +..||+||+...
T Consensus 19 ~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 19 PDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 4569999999886 33332222 399999999999999874 345999998754
No 49
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=6.8e-08 Score=88.90 Aligned_cols=58 Identities=26% Similarity=0.541 Sum_probs=44.8
Q ss_pred CCCCcccccccccccCCC-------ceEEecCCCcccHHHHHHHHhcC-CCCCCCccccCCCCCCC
Q 018233 295 CHGGETCAICLEDYQDGE-------KLKVLSCKHEFHASCVDSWLTKW-GTFCPVCKHDMRNNSES 352 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~~-------~vr~LpC~H~FH~~CI~~Wl~~~-~~~CPlCR~~i~~~~~~ 352 (359)
.-++..|+||=..+.... ++-.|.|+|+||+.||+-|.... +.+||.||..++.+.+-
T Consensus 221 hl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmf 286 (328)
T KOG1734|consen 221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMF 286 (328)
T ss_pred CCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhc
Confidence 345679999988875543 67889999999999999997552 22599999888665543
No 50
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.37 E-value=2.6e-07 Score=62.76 Aligned_cols=39 Identities=36% Similarity=0.725 Sum_probs=22.9
Q ss_pred cccccccccCCC-ceEEecCCCcccHHHHHHHHhcC---CCCCC
Q 018233 301 CAICLEDYQDGE-KLKVLSCKHEFHASCVDSWLTKW---GTFCP 340 (359)
Q Consensus 301 C~ICLe~f~~~~-~vr~LpC~H~FH~~CI~~Wl~~~---~~~CP 340 (359)
|+||.| |...+ .-++|+|||.|+++||+.++... ...||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 76644 44789999999999999999864 33477
No 51
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=98.34 E-value=1.6e-06 Score=79.66 Aligned_cols=98 Identities=20% Similarity=0.150 Sum_probs=68.1
Q ss_pred CCeeEEEeeCCCCCCCCCCCCCC--CCCCCCcceEEEEEcCCCChHHHHHHHHHcCCcEEEEecccCccc----------
Q 018233 118 SGTCGALHVADPADACSPLSNPV--ASNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREKGS---------- 185 (359)
Q Consensus 118 ~~~~g~L~~~~p~~aC~~~~~~~--~~~~~~~~~ivLV~RG~CsF~~K~~~Aq~aGA~avIi~n~~~~~~---------- 185 (359)
+.++|.||++. .|..-+... .......++|||+++|.|.+.+|+++|+++||+|||||++..+..
T Consensus 43 g~v~g~lVyvn---yG~~~D~~~L~~~gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~d~~~~~~~~~~~y 119 (220)
T cd02121 43 GNVTAELVYAN---YGSPEDFEYLEDLGIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDPADDGYITGENGKTY 119 (220)
T ss_pred CCceEEEEEcC---CCcHHHHHHHhhcCCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCchhcccccccccccC
Confidence 45789999875 444332210 011235789999999999999999999999999999998742210
Q ss_pred --------------ccc---c-cCCC--------------------CcceeeEEeechhhHHHHHHhhccC
Q 018233 186 --------------LVS---M-TASH--------------------EGVKVHAIFVSLETGVYLKEHARGE 218 (359)
Q Consensus 186 --------------~~~---m-~~~~--------------------~~i~Ip~v~i~~~~G~~L~~~~~~~ 218 (359)
.+. . .+|. .-..||+.=|+..|++.|++.+...
T Consensus 120 P~g~~~~~~~vqRgsv~~~~~~~GDplTPG~ps~~~~~r~~~~~~~~lP~IPs~PIS~~da~~lL~~L~g~ 190 (220)
T cd02121 120 PDGPARPPSGVQRGSVLFMSIGPGDPLTPGYPSKPGAERRDKEESKGLPKIPSLPISYRDAQPLLKALGGP 190 (220)
T ss_pred CCCCCCCCCcceecceeccccCCCCCCCCCCCCCCCCcccCcccccCCCCCCcccCCHHHHHHHHHHcCCC
Confidence 000 0 0110 0146999999999999999988754
No 52
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=98.32 E-value=6.2e-06 Score=71.42 Aligned_cols=93 Identities=17% Similarity=0.017 Sum_probs=62.0
Q ss_pred CCeeEEEeeCC---CCCCCCCCCCCCCCCCCCcceEEEEEcCC------------------CChHHHHHHHHHcCCcEEE
Q 018233 118 SGTCGALHVAD---PADACSPLSNPVASNDADHINFVLIVRGQ------------------CIFEDKIRNAQAAGYRAAI 176 (359)
Q Consensus 118 ~~~~g~L~~~~---p~~aC~~~~~~~~~~~~~~~~ivLV~RG~------------------CsF~~K~~~Aq~aGA~avI 176 (359)
..++|+||... ..++|...+... .+.+++||||.||+ |+|..|+++|+++||+|||
T Consensus 18 g~vtg~lVfvGyGi~~~~~~~~Dy~g---iDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVI 94 (151)
T cd04822 18 GAVTAPVVFAGYGITAPELGYDDYAG---LDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVI 94 (151)
T ss_pred CCceEeEEEecCCcCccccchhhccC---CCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEE
Confidence 56889988664 346776554322 23589999999884 9999999999999999999
Q ss_pred EecccCccccccccCCCCcceeeEEeechhhHHHHHHh
Q 018233 177 VYNDREKGSLVSMTASHEGVKVHAIFVSLETGVYLKEH 214 (359)
Q Consensus 177 i~n~~~~~~~~~m~~~~~~i~Ip~v~i~~~~G~~L~~~ 214 (359)
||++.+...-..-.....+.. .++.++....+.+...
T Consensus 95 v~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 131 (151)
T cd04822 95 VVNGPNSHSGDADRLPRFGGT-APQRVDIAAADPWFTA 131 (151)
T ss_pred EEeCCcccCcccccccccCcc-ceEEechHHHHHHhhh
Confidence 999864321000000000111 1677787777777764
No 53
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.29 E-value=1.6e-07 Score=98.66 Aligned_cols=53 Identities=30% Similarity=0.827 Sum_probs=42.1
Q ss_pred cCCCCCcccccccccccCCCceEEec------CCCcccHHHHHHHHhcC-CCCCCCccccCC
Q 018233 293 SQCHGGETCAICLEDYQDGEKLKVLS------CKHEFHASCVDSWLTKW-GTFCPVCKHDMR 347 (359)
Q Consensus 293 ~~~~~~~~C~ICLe~f~~~~~vr~Lp------C~H~FH~~CI~~Wl~~~-~~~CPlCR~~i~ 347 (359)
+..+..++|+||..-+..-| |.|| |+|.||..|+-.|+... +.+||+||..|+
T Consensus 1464 ~~fsG~eECaICYsvL~~vd--r~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1464 EKFSGHEECAICYSVLDMVD--RSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred hhcCCcchhhHHHHHHHHHh--ccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 34677899999998876332 4554 89999999999999984 345999998875
No 54
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=5.2e-07 Score=83.20 Aligned_cols=51 Identities=29% Similarity=0.674 Sum_probs=41.9
Q ss_pred CCcccccccccccCCCceEEecCCCcccHHHHHH-HHhcCCCCCCCccccCCCCC
Q 018233 297 GGETCAICLEDYQDGEKLKVLSCKHEFHASCVDS-WLTKWGTFCPVCKHDMRNNS 350 (359)
Q Consensus 297 ~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~-Wl~~~~~~CPlCR~~i~~~~ 350 (359)
.+..|+||++..+.. ..+||||+|+..||.. |-.++-..||+||+.+..+.
T Consensus 214 ~d~kC~lC~e~~~~p---s~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 214 ADYKCFLCLEEPEVP---SCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred cccceeeeecccCCc---ccccccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence 467999999996665 6889999999999999 87765545999999876653
No 55
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=98.14 E-value=9.6e-06 Score=69.08 Aligned_cols=65 Identities=15% Similarity=0.056 Sum_probs=49.9
Q ss_pred CCCCeeEEEeeCC---CCCCCCCCCCCCCCCCCCcceEEEEEcCCCC------------hHHHHHHHHHcCCcEEEEecc
Q 018233 116 NSSGTCGALHVAD---PADACSPLSNPVASNDADHINFVLIVRGQCI------------FEDKIRNAQAAGYRAAIVYND 180 (359)
Q Consensus 116 ~~~~~~g~L~~~~---p~~aC~~~~~~~~~~~~~~~~ivLV~RG~Cs------------F~~K~~~Aq~aGA~avIi~n~ 180 (359)
+...+.|+||... ..++|...+... .+.+++||||++|.|+ +..|+++|+++||+|||||++
T Consensus 18 ~~g~v~gelVfvGyG~~~~~~~~~Dy~~---iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d 94 (137)
T cd04820 18 PAASVEAPLVFVGYGLVAPELGHDDYAG---LDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTT 94 (137)
T ss_pred CCCCceEeEEEecCCcCccCcCHhhccC---CCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeC
Confidence 4456888988653 345777554322 2358999999999995 889999999999999999998
Q ss_pred cCc
Q 018233 181 REK 183 (359)
Q Consensus 181 ~~~ 183 (359)
...
T Consensus 95 ~~~ 97 (137)
T cd04820 95 PRS 97 (137)
T ss_pred Ccc
Confidence 543
No 56
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.09 E-value=1.6e-06 Score=65.93 Aligned_cols=52 Identities=21% Similarity=0.383 Sum_probs=40.2
Q ss_pred CcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCCCCC
Q 018233 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNSES 352 (359)
Q Consensus 298 ~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~~~ 352 (359)
.-.|+||.+-|.+. .++||||.|-++||+.|+..+...||+|+.++......
T Consensus 4 ~f~CpIt~~lM~dP---Vi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~ 55 (73)
T PF04564_consen 4 EFLCPITGELMRDP---VILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLI 55 (73)
T ss_dssp GGB-TTTSSB-SSE---EEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSE
T ss_pred ccCCcCcCcHhhCc---eeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccce
Confidence 56899999999987 68899999999999999999555699999988765443
No 57
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=98.08 E-value=8.3e-07 Score=66.93 Aligned_cols=51 Identities=25% Similarity=0.640 Sum_probs=24.6
Q ss_pred CcccccccccccCCCceEEe-----cCCCcccHHHHHHHHhcC---C-------CCCCCccccCCC
Q 018233 298 GETCAICLEDYQDGEKLKVL-----SCKHEFHASCVDSWLTKW---G-------TFCPVCKHDMRN 348 (359)
Q Consensus 298 ~~~C~ICLe~f~~~~~vr~L-----pC~H~FH~~CI~~Wl~~~---~-------~~CPlCR~~i~~ 348 (359)
+.+|.||++.+.+++.+-.+ .|++.||..||.+||... + -.||.|+.+|.-
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 46899999987644332222 389999999999999762 1 149999998754
No 58
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=98.05 E-value=1.7e-05 Score=67.89 Aligned_cols=92 Identities=13% Similarity=-0.022 Sum_probs=58.6
Q ss_pred CCeeEEEeeCC---CCCCCCCCCCCCCCCCCCcceEEEEEcCCC------------------ChHHHHHHHHHcCCcEEE
Q 018233 118 SGTCGALHVAD---PADACSPLSNPVASNDADHINFVLIVRGQC------------------IFEDKIRNAQAAGYRAAI 176 (359)
Q Consensus 118 ~~~~g~L~~~~---p~~aC~~~~~~~~~~~~~~~~ivLV~RG~C------------------sF~~K~~~Aq~aGA~avI 176 (359)
..+.++||... ...+|.-.++.. .+..+|||||.||+| +|..|+++|+++||+|||
T Consensus 18 ~~~~aelVfvGyGi~a~~~~~dDYag---~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvI 94 (142)
T cd04814 18 AIKDAPLVFVGYGIKAPELSWDDYAG---LDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVL 94 (142)
T ss_pred cccceeeEEecCCcCCCCCChhhcCC---CCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEE
Confidence 34567777542 335677554332 235889999999999 699999999999999999
Q ss_pred EecccCcccccc--ccCCC-CcceeeEEeechhhHHHHHH
Q 018233 177 VYNDREKGSLVS--MTASH-EGVKVHAIFVSLETGVYLKE 213 (359)
Q Consensus 177 i~n~~~~~~~~~--m~~~~-~~i~Ip~v~i~~~~G~~L~~ 213 (359)
|+++.+.....- +.... .++. ....|+...+.+|.+
T Consensus 95 ii~~~~~~~~p~~~~~~~~~~~~~-~~~~i~~~~a~~l~~ 133 (142)
T cd04814 95 IVHELAPASYGWATWKNPAKVHPN-LEAAIQRAVAVDLFE 133 (142)
T ss_pred EEeCCCcccCChhhhhcccccCCc-eeeEecHHHHHHHHh
Confidence 999865332211 11111 1122 133466666666654
No 59
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=2.6e-06 Score=81.82 Aligned_cols=50 Identities=30% Similarity=0.757 Sum_probs=39.9
Q ss_pred CCCcccccccccccCCCceEEecCCC-cccHHHHHHHHhcCCCCCCCccccCCCC
Q 018233 296 HGGETCAICLEDYQDGEKLKVLSCKH-EFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (359)
Q Consensus 296 ~~~~~C~ICLe~f~~~~~vr~LpC~H-~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (359)
++..+|.|||.+-.+ ..+|||.| ..|..|-+.-.-+++ .||+||++|...
T Consensus 288 ~~gkeCVIClse~rd---t~vLPCRHLCLCs~Ca~~Lr~q~n-~CPICRqpi~~l 338 (349)
T KOG4265|consen 288 ESGKECVICLSESRD---TVVLPCRHLCLCSGCAKSLRYQTN-NCPICRQPIEEL 338 (349)
T ss_pred cCCCeeEEEecCCcc---eEEecchhhehhHhHHHHHHHhhc-CCCccccchHhh
Confidence 457899999999443 58999999 599999888654555 399999998654
No 60
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=2.7e-06 Score=85.12 Aligned_cols=50 Identities=24% Similarity=0.604 Sum_probs=38.8
Q ss_pred CcccccccccccCCCceEEecCCCcccHHHHHHHHhcC----CCCCCCccccCCCCC
Q 018233 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKW----GTFCPVCKHDMRNNS 350 (359)
Q Consensus 298 ~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~----~~~CPlCR~~i~~~~ 350 (359)
+..|+|||++.... ++ +-|||+||..||-+.+... -..||+||..|..++
T Consensus 186 ~~~CPICL~~~~~p--~~-t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kd 239 (513)
T KOG2164|consen 186 DMQCPICLEPPSVP--VR-TNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKD 239 (513)
T ss_pred CCcCCcccCCCCcc--cc-cccCceeeHHHHHHHHhhhcccCCccCCchhhhccccc
Confidence 67999999996554 23 3499999999999887663 124999999887643
No 61
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=98.03 E-value=1.7e-06 Score=84.98 Aligned_cols=49 Identities=33% Similarity=0.799 Sum_probs=40.4
Q ss_pred CCCcccccccccccCC-CceEEecCCCcccHHHHHHHHhcCCCCCCCccccCC
Q 018233 296 HGGETCAICLEDYQDG-EKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMR 347 (359)
Q Consensus 296 ~~~~~C~ICLe~f~~~-~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~ 347 (359)
-+-.+|+||||-+.+. .-++.+.|.|.||..|+..|-.. +||+||....
T Consensus 173 tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~---scpvcR~~q~ 222 (493)
T KOG0804|consen 173 TELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDS---SCPVCRYCQS 222 (493)
T ss_pred ccCCCcchhHhhcCccccceeeeecccccchHHHhhcccC---cChhhhhhcC
Confidence 3456999999998776 35677789999999999999544 6999998765
No 62
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.01 E-value=1.3e-05 Score=68.95 Aligned_cols=95 Identities=13% Similarity=0.038 Sum_probs=64.2
Q ss_pred CCCCeeEEEeeCCC---CCCCCCCCCCCCCCCCCcceEEEEEcCCCChHHHHHHHHHcCCcEEEEecccCcccc------
Q 018233 116 NSSGTCGALHVADP---ADACSPLSNPVASNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREKGSL------ 186 (359)
Q Consensus 116 ~~~~~~g~L~~~~p---~~aC~~~~~~~~~~~~~~~~ivLV~RG~CsF~~K~~~Aq~aGA~avIi~n~~~~~~~------ 186 (359)
..+.++|++|+++- .| =+.+.. . -+.+++|||++.|.-....|+++||++||.|||||.|..+...
T Consensus 11 ~sG~Vtg~~VYvNyG~~eD-f~~L~~-~---V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~d~~~~~~~~~ 85 (153)
T cd02131 11 AKGTLQAEVVDVQYGSVED-LRRIRD-N---MNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPCDLPKTRHTWH 85 (153)
T ss_pred CCCceEEEEEEecCCCHHH-HHHHHh-C---CCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecChhhccCcCCCcc
Confidence 34568999998752 11 001111 1 2357899999999999999999999999999999998532210
Q ss_pred --c--cc--cCCC-----------------CcceeeEEeechhhHHHHHHhh
Q 018233 187 --V--SM--TASH-----------------EGVKVHAIFVSLETGVYLKEHA 215 (359)
Q Consensus 187 --~--~m--~~~~-----------------~~i~Ip~v~i~~~~G~~L~~~~ 215 (359)
. .. .+|. .-.+||+.=|+..|++.|++.-
T Consensus 86 ~v~~v~~~~~GDP~TPG~PS~~~~~R~~~~~lP~IPs~PIS~~dA~~lL~~~ 137 (153)
T cd02131 86 QAFMVSLNPGGDPSTPGYPSADQSCRQCRGNLTSLLVQPISAYLAKKLLSAP 137 (153)
T ss_pred ceEEEecCCCCCCCCCCCccccCcccCCcCCCCCCcccccCHHHHHHHHhCC
Confidence 0 00 1211 1146899999999998888754
No 63
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.01 E-value=4.8e-06 Score=79.46 Aligned_cols=54 Identities=31% Similarity=0.650 Sum_probs=40.8
Q ss_pred Cccccccccc-ccCCC-ceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCCCC
Q 018233 298 GETCAICLED-YQDGE-KLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNSE 351 (359)
Q Consensus 298 ~~~C~ICLe~-f~~~~-~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~~ 351 (359)
+..|+||+.+ |-..+ ++.+-+|||.||.+||+..+......||.|+..+.....
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~f 58 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNF 58 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhc
Confidence 4689999997 33333 334448999999999999776655569999998876653
No 64
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=4.3e-06 Score=66.32 Aligned_cols=48 Identities=33% Similarity=0.797 Sum_probs=35.5
Q ss_pred CCcccccccccc-------c-----CCCceEEe--cCCCcccHHHHHHHHhcCCCCCCCcccc
Q 018233 297 GGETCAICLEDY-------Q-----DGEKLKVL--SCKHEFHASCVDSWLTKWGTFCPVCKHD 345 (359)
Q Consensus 297 ~~~~C~ICLe~f-------~-----~~~~vr~L--pC~H~FH~~CI~~Wl~~~~~~CPlCR~~ 345 (359)
.-+.|+||...+ + ..++..+. -|+|.||..||..||++++. ||+|.++
T Consensus 45 ~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~v-CPLdn~e 106 (114)
T KOG2930|consen 45 VVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNV-CPLDNKE 106 (114)
T ss_pred eechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCc-CCCcCcc
Confidence 357899988653 1 12233333 39999999999999999885 9999765
No 65
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.87 E-value=4.8e-06 Score=79.16 Aligned_cols=54 Identities=24% Similarity=0.564 Sum_probs=46.1
Q ss_pred CCcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCCCCCcc
Q 018233 297 GGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNSESNE 354 (359)
Q Consensus 297 ~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~~~~~ 354 (359)
.--.|.||.|-|... .++||+|.||.-||+..|..+- .||.|+.++.+....++
T Consensus 22 ~lLRC~IC~eyf~ip---~itpCsHtfCSlCIR~~L~~~p-~CP~C~~~~~Es~Lr~n 75 (442)
T KOG0287|consen 22 DLLRCGICFEYFNIP---MITPCSHTFCSLCIRKFLSYKP-QCPTCCVTVTESDLRNN 75 (442)
T ss_pred HHHHHhHHHHHhcCc---eeccccchHHHHHHHHHhccCC-CCCceecccchhhhhhh
Confidence 345899999999987 7889999999999999998866 59999998877665543
No 66
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=5.1e-06 Score=77.90 Aligned_cols=46 Identities=33% Similarity=0.728 Sum_probs=40.0
Q ss_pred CCCCcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccc
Q 018233 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKH 344 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~ 344 (359)
..+.-.|+||++.|... +++||+|.|+..||..+.. ....||.||.
T Consensus 10 ~~~~~~C~iC~~~~~~p---~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~ 55 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREP---VLLPCGHNFCRACLTRSWE-GPLSCPVCRP 55 (386)
T ss_pred ccccccChhhHHHhhcC---ccccccchHhHHHHHHhcC-CCcCCcccCC
Confidence 34567999999999998 8999999999999999888 4556999994
No 67
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=8.3e-06 Score=78.81 Aligned_cols=47 Identities=30% Similarity=0.768 Sum_probs=34.9
Q ss_pred CcccccccccccCC-CceEEec-CCCcccHHHHHHHHhcC--CCCCCCcccc
Q 018233 298 GETCAICLEDYQDG-EKLKVLS-CKHEFHASCVDSWLTKW--GTFCPVCKHD 345 (359)
Q Consensus 298 ~~~C~ICLe~f~~~-~~vr~Lp-C~H~FH~~CI~~Wl~~~--~~~CPlCR~~ 345 (359)
...|.|| +++.+. +.+.-+- |||+||..|+.+|+..- +..||+||-.
T Consensus 4 ~A~C~Ic-~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik 54 (465)
T KOG0827|consen 4 MAECHIC-IDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIK 54 (465)
T ss_pred cceeeEe-ccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeec
Confidence 4589999 555554 3454444 99999999999999883 1259999833
No 68
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.66 E-value=2e-05 Score=73.51 Aligned_cols=52 Identities=25% Similarity=0.448 Sum_probs=43.6
Q ss_pred CCCcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCCCC
Q 018233 296 HGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNSE 351 (359)
Q Consensus 296 ~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~~ 351 (359)
+.-..|.||-+-|... ..++|||.||.-||...|..+-. ||+||.+..+...
T Consensus 23 Ds~lrC~IC~~~i~ip---~~TtCgHtFCslCIR~hL~~qp~-CP~Cr~~~~esrl 74 (391)
T COG5432 23 DSMLRCRICDCRISIP---CETTCGHTFCSLCIRRHLGTQPF-CPVCREDPCESRL 74 (391)
T ss_pred hhHHHhhhhhheeecc---eecccccchhHHHHHHHhcCCCC-CccccccHHhhhc
Confidence 3457999999998887 67789999999999999999775 9999988655433
No 69
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=2.1e-05 Score=73.99 Aligned_cols=54 Identities=20% Similarity=0.429 Sum_probs=43.5
Q ss_pred CcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCCCCCcc
Q 018233 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNSESNE 354 (359)
Q Consensus 298 ~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~~~~~ 354 (359)
..+|.||+....-. ..|+|+|.|+..||.-=.+.....||+||.+|+.....++
T Consensus 7 ~~eC~IC~nt~n~P---v~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i~~~p 60 (324)
T KOG0824|consen 7 KKECLICYNTGNCP---VNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTIDFEP 60 (324)
T ss_pred CCcceeeeccCCcC---ccccccchhhhhhhcchhhcCCCCCceecCCCCcchhcch
Confidence 56999999995554 6889999999999987655554459999999988766554
No 70
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.64 E-value=2.2e-05 Score=73.58 Aligned_cols=60 Identities=28% Similarity=0.701 Sum_probs=47.8
Q ss_pred CCCCcccccccccccCCCceEEecCCCcccHHHHHHHHhc----------------------CCCCCCCccccCCCCCCC
Q 018233 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTK----------------------WGTFCPVCKHDMRNNSES 352 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~----------------------~~~~CPlCR~~i~~~~~~ 352 (359)
......|+|||.-|.+++...+++|-|.||..|+...|.. .+..||+||..|-.+...
T Consensus 112 n~p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~~s 191 (368)
T KOG4445|consen 112 NHPNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEENS 191 (368)
T ss_pred CCCCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccccccc
Confidence 4456799999999999999999999999999999766532 123599999988766554
Q ss_pred cc
Q 018233 353 NE 354 (359)
Q Consensus 353 ~~ 354 (359)
.+
T Consensus 192 lk 193 (368)
T KOG4445|consen 192 LK 193 (368)
T ss_pred ee
Confidence 43
No 71
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.49 E-value=2.3e-05 Score=81.53 Aligned_cols=52 Identities=29% Similarity=0.525 Sum_probs=44.4
Q ss_pred CCCcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCC
Q 018233 296 HGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRN 348 (359)
Q Consensus 296 ~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (359)
.....|++||..+.++......+|+|.||.+||+.|-...++ ||+||..+..
T Consensus 121 ~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqT-CPiDR~EF~~ 172 (1134)
T KOG0825|consen 121 HVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQT-CPVDRGEFGE 172 (1134)
T ss_pred hhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhccc-Cchhhhhhhe
Confidence 345689999999988877777789999999999999999885 9999987644
No 72
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=5.6e-05 Score=73.57 Aligned_cols=53 Identities=25% Similarity=0.728 Sum_probs=39.5
Q ss_pred CCCcccccccccccCCC----ceEEec-CCCcccHHHHHHHHhcCC------CCCCCccccCCC
Q 018233 296 HGGETCAICLEDYQDGE----KLKVLS-CKHEFHASCVDSWLTKWG------TFCPVCKHDMRN 348 (359)
Q Consensus 296 ~~~~~C~ICLe~f~~~~----~vr~Lp-C~H~FH~~CI~~Wl~~~~------~~CPlCR~~i~~ 348 (359)
..+.+|.||++..-+.. ...+|| |.|.|+..||+.|-...+ ..||.||.....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~ 222 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF 222 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence 34789999999864432 134556 999999999999985433 469999987643
No 73
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.00011 Score=71.81 Aligned_cols=49 Identities=37% Similarity=0.950 Sum_probs=38.1
Q ss_pred CCcccccccccccCC-C-ceEEecCCCcccHHHHHHHHhcC-CCCCCCcccc
Q 018233 297 GGETCAICLEDYQDG-E-KLKVLSCKHEFHASCVDSWLTKW-GTFCPVCKHD 345 (359)
Q Consensus 297 ~~~~C~ICLe~f~~~-~-~vr~LpC~H~FH~~CI~~Wl~~~-~~~CPlCR~~ 345 (359)
...+|+|||++++-. + .+..+.|||.|-.+||+.||.+. ...||.|...
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~k 54 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGK 54 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCCh
Confidence 457999999998644 4 45566799999999999999642 2359999654
No 74
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=3.9e-05 Score=73.59 Aligned_cols=52 Identities=23% Similarity=0.493 Sum_probs=43.0
Q ss_pred CCCCcccccccccccCCCceEEec-CCCcccHHHHHHHHhcCCCCCCCccccCCCC
Q 018233 295 CHGGETCAICLEDYQDGEKLKVLS-CKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~~~vr~Lp-C~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (359)
...+..|+|||+-++.. +.++ |.|.||.+||..=+...+..||.||+.+..+
T Consensus 40 ~~~~v~c~icl~llk~t---mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 40 FDIQVICPICLSLLKKT---MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSK 92 (381)
T ss_pred hhhhhccHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcccc
Confidence 34567999999998775 3444 9999999999999988777899999988655
No 75
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=97.17 E-value=0.00026 Score=77.68 Aligned_cols=69 Identities=25% Similarity=0.615 Sum_probs=49.8
Q ss_pred hccceeeeccCCCcCCCCCcccccccccccCCCceEEecCCCcccHHHHHHHHhcC-----C----CCCCCccccCCCC
Q 018233 280 EALPCFLFSSASSSQCHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKW-----G----TFCPVCKHDMRNN 349 (359)
Q Consensus 280 ~~lp~~~~~~~~~~~~~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~-----~----~~CPlCR~~i~~~ 349 (359)
.-||-...++... ..+.++.|.||+.+--......+|.|+|+||-.|.+.-|+.+ - .+||+|+.+|+..
T Consensus 3469 ~CLPCl~Cdks~t-kQD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~ 3546 (3738)
T KOG1428|consen 3469 HCLPCLHCDKSAT-KQDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHI 3546 (3738)
T ss_pred hcccccccChhhh-hcccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhH
Confidence 3455544333222 356788999999987666778899999999999998766553 1 2699999988654
No 76
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.16 E-value=0.00014 Score=70.73 Aligned_cols=50 Identities=30% Similarity=0.771 Sum_probs=40.7
Q ss_pred CCCCcccccccccccCCCceEEecCCCcccHHHHHHHHhcC-CCCCCCccccCC
Q 018233 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKW-GTFCPVCKHDMR 347 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~-~~~CPlCR~~i~ 347 (359)
....+.|-||-|. +..+++-||||..|..|+..|-... ...||.||.+|-
T Consensus 366 gsTFeLCKICaen---dKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIK 416 (563)
T KOG1785|consen 366 GSTFELCKICAEN---DKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIK 416 (563)
T ss_pred cchHHHHHHhhcc---CCCcccccccchHHHHHHHhhcccCCCCCCCceeeEec
Confidence 3457799999987 4457888999999999999998554 335999999873
No 77
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.00013 Score=62.74 Aligned_cols=31 Identities=32% Similarity=0.718 Sum_probs=28.3
Q ss_pred CCCCcccccccccccCCCceEEecCCCcccH
Q 018233 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHA 325 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~ 325 (359)
.++..+|+||||+++.+|.+..|||-.+||+
T Consensus 174 ~ddkGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 174 KDDKGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred cccCCcEEEEhhhccCCCceeccceEEEeec
Confidence 3456799999999999999999999999997
No 78
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.05 E-value=0.00022 Score=69.24 Aligned_cols=48 Identities=35% Similarity=0.744 Sum_probs=39.5
Q ss_pred CCcccccccccccCC-CceEEecCCCcccHHHHHHHHhcCCC-CCCCccc
Q 018233 297 GGETCAICLEDYQDG-EKLKVLSCKHEFHASCVDSWLTKWGT-FCPVCKH 344 (359)
Q Consensus 297 ~~~~C~ICLe~f~~~-~~vr~LpC~H~FH~~CI~~Wl~~~~~-~CPlCR~ 344 (359)
.+-.|..|=|.+-.. +.+.-|||.|+||..|+.+.|.++.+ +||.||.
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 345899999887544 56889999999999999999988643 5999983
No 79
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.03 E-value=0.00016 Score=52.96 Aligned_cols=52 Identities=23% Similarity=0.533 Sum_probs=24.4
Q ss_pred CcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCCCCCcc
Q 018233 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNSESNE 354 (359)
Q Consensus 298 ~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~~~~~ 354 (359)
.-.|++|.+-+++. +....|.|+|+..||..=+.. .||+|+.+....+.+.+
T Consensus 7 lLrCs~C~~~l~~p--v~l~~CeH~fCs~Ci~~~~~~---~CPvC~~Paw~qD~~~N 58 (65)
T PF14835_consen 7 LLRCSICFDILKEP--VCLGGCEHIFCSSCIRDCIGS---ECPVCHTPAWIQDIQIN 58 (65)
T ss_dssp TTS-SSS-S--SS---B---SSS--B-TTTGGGGTTT---B-SSS--B-S-SS----
T ss_pred hcCCcHHHHHhcCC--ceeccCccHHHHHHhHHhcCC---CCCCcCChHHHHHHHhh
Confidence 35899999997775 445579999999999774433 49999988776655543
No 80
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.00059 Score=61.74 Aligned_cols=52 Identities=25% Similarity=0.634 Sum_probs=42.7
Q ss_pred CCcccccccccccCCCceEEecCCCcccHHHHHHHHhc-------CCCCCCCccccCCCC
Q 018233 297 GGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTK-------WGTFCPVCKHDMRNN 349 (359)
Q Consensus 297 ~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~-------~~~~CPlCR~~i~~~ 349 (359)
-...|..|--.++.||.+| |-|-|+||.+|+++|-.. ...+||.|-.+|.+.
T Consensus 49 Y~pNC~LC~t~La~gdt~R-LvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp 107 (299)
T KOG3970|consen 49 YNPNCRLCNTPLASGDTTR-LVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPP 107 (299)
T ss_pred CCCCCceeCCccccCccee-ehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCC
Confidence 3458999999999998776 459999999999999755 234699999988655
No 81
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.00021 Score=50.32 Aligned_cols=47 Identities=26% Similarity=0.620 Sum_probs=32.0
Q ss_pred CCcccccccccccCCCceEEecCCC-cccHHHHHH-HHhcCCCCCCCccccCC
Q 018233 297 GGETCAICLEDYQDGEKLKVLSCKH-EFHASCVDS-WLTKWGTFCPVCKHDMR 347 (359)
Q Consensus 297 ~~~~C~ICLe~f~~~~~vr~LpC~H-~FH~~CI~~-Wl~~~~~~CPlCR~~i~ 347 (359)
-+++|.||+|.=.+. ..-.||| ..+.+|-.+ |-..+. .||+||++|.
T Consensus 6 ~~dECTICye~pvds---VlYtCGHMCmCy~Cg~rl~~~~~g-~CPiCRapi~ 54 (62)
T KOG4172|consen 6 WSDECTICYEHPVDS---VLYTCGHMCMCYACGLRLKKALHG-CCPICRAPIK 54 (62)
T ss_pred cccceeeeccCcchH---HHHHcchHHhHHHHHHHHHHccCC-cCcchhhHHH
Confidence 348999999983322 2224999 477888544 444555 5999999874
No 82
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.00023 Score=74.65 Aligned_cols=49 Identities=24% Similarity=0.649 Sum_probs=39.7
Q ss_pred cccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCCC
Q 018233 299 ETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNS 350 (359)
Q Consensus 299 ~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~ 350 (359)
-.|+.|-...++- .++.|+|+||..|+.+-+..++..||.|...+..++
T Consensus 644 LkCs~Cn~R~Kd~---vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganD 692 (698)
T KOG0978|consen 644 LKCSVCNTRWKDA---VITKCGHVFCEECVQTRYETRQRKCPKCNAAFGAND 692 (698)
T ss_pred eeCCCccCchhhH---HHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccc
Confidence 4899999665542 455699999999999999888777999998876653
No 83
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.95 E-value=0.00042 Score=50.02 Aligned_cols=43 Identities=26% Similarity=0.586 Sum_probs=29.3
Q ss_pred CCcccccccccccCCCceEEecCCCcccHHHHHHHHhcC-CCCCCC
Q 018233 297 GGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKW-GTFCPV 341 (359)
Q Consensus 297 ~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~-~~~CPl 341 (359)
....|+|.+..|++ .++...|+|+|-++.|.++++.+ ...||+
T Consensus 10 ~~~~CPiT~~~~~~--PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFED--PVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SS--EEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhC--CcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 35699999999876 47777899999999999999443 345998
No 84
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.00089 Score=66.59 Aligned_cols=50 Identities=26% Similarity=0.609 Sum_probs=41.4
Q ss_pred CCCCcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCC
Q 018233 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRN 348 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (359)
...+.+|.||+..+.+. ..+||||.|+..||+.=+. +.+.||+||..+..
T Consensus 81 ~~sef~c~vc~~~l~~p---v~tpcghs~c~~Cl~r~ld-~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 81 IRSEFECCVCSRALYPP---VVTPCGHSFCLECLDRSLD-QETECPLCRDELVE 130 (398)
T ss_pred ccchhhhhhhHhhcCCC---ccccccccccHHHHHHHhc-cCCCCccccccccc
Confidence 35677999999988776 6779999999999999555 45569999998875
No 85
>PHA02862 5L protein; Provisional
Probab=96.74 E-value=0.001 Score=56.29 Aligned_cols=47 Identities=21% Similarity=0.533 Sum_probs=35.9
Q ss_pred CcccccccccccCCCceEEecCC-----CcccHHHHHHHHhcCC-CCCCCccccCCC
Q 018233 298 GETCAICLEDYQDGEKLKVLSCK-----HEFHASCVDSWLTKWG-TFCPVCKHDMRN 348 (359)
Q Consensus 298 ~~~C~ICLe~f~~~~~vr~LpC~-----H~FH~~CI~~Wl~~~~-~~CPlCR~~i~~ 348 (359)
++.|=||+++-++. .-||+ ...|.+|+.+|+...+ ..||+|+.+..-
T Consensus 2 ~diCWIC~~~~~e~----~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 2 SDICWICNDVCDER----NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CCEEEEecCcCCCC----cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 46899999984332 35874 4689999999998743 469999988743
No 86
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=96.50 E-value=0.0012 Score=55.60 Aligned_cols=35 Identities=20% Similarity=0.559 Sum_probs=30.8
Q ss_pred CcccccccccccCCCceEEecCC------CcccHHHHHHHH
Q 018233 298 GETCAICLEDYQDGEKLKVLSCK------HEFHASCVDSWL 332 (359)
Q Consensus 298 ~~~C~ICLe~f~~~~~vr~LpC~------H~FH~~CI~~Wl 332 (359)
..+|.||++.+..++-+..++|+ |.||.+|+..|-
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~ 66 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWR 66 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHH
Confidence 67999999999996678888885 889999999994
No 87
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=96.46 E-value=0.0019 Score=44.72 Aligned_cols=41 Identities=32% Similarity=0.888 Sum_probs=28.2
Q ss_pred cccccccccCCCceEEecCC-----CcccHHHHHHHHhcC-CCCCCCc
Q 018233 301 CAICLEDYQDGEKLKVLSCK-----HEFHASCVDSWLTKW-GTFCPVC 342 (359)
Q Consensus 301 C~ICLe~f~~~~~vr~LpC~-----H~FH~~CI~~Wl~~~-~~~CPlC 342 (359)
|-||+++-++.+ --+.||+ -..|.+||..|+..+ +.+|++|
T Consensus 1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 779999977665 3457873 378999999999874 3459987
No 88
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=96.45 E-value=0.0026 Score=54.92 Aligned_cols=50 Identities=20% Similarity=0.587 Sum_probs=37.1
Q ss_pred CCCcccccccccccCCCceEEecCC--C---cccHHHHHHHHhcCC-CCCCCccccCCCC
Q 018233 296 HGGETCAICLEDYQDGEKLKVLSCK--H---EFHASCVDSWLTKWG-TFCPVCKHDMRNN 349 (359)
Q Consensus 296 ~~~~~C~ICLe~f~~~~~vr~LpC~--H---~FH~~CI~~Wl~~~~-~~CPlCR~~i~~~ 349 (359)
..+..|-||.++-. +. .-||. . ..|.+|++.|+...+ .+|++|+++..-.
T Consensus 6 ~~~~~CRIC~~~~~--~~--~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 6 LMDKCCWICKDEYD--VV--TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred CCCCeeEecCCCCC--Cc--cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence 45779999998843 22 35864 3 579999999998854 4699999887544
No 89
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.0018 Score=62.67 Aligned_cols=47 Identities=26% Similarity=0.597 Sum_probs=35.1
Q ss_pred CCCCcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCC
Q 018233 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRN 348 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (359)
....+.|.||+++..+ ...+||||.=+ |...- ++..+||+||+.|..
T Consensus 302 ~~~p~lcVVcl~e~~~---~~fvpcGh~cc--ct~cs--~~l~~CPvCR~rI~~ 348 (355)
T KOG1571|consen 302 LPQPDLCVVCLDEPKS---AVFVPCGHVCC--CTLCS--KHLPQCPVCRQRIRL 348 (355)
T ss_pred cCCCCceEEecCCccc---eeeecCCcEEE--chHHH--hhCCCCchhHHHHHH
Confidence 5567899999999666 57899999855 65542 334459999998753
No 90
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.0016 Score=63.85 Aligned_cols=47 Identities=32% Similarity=0.586 Sum_probs=38.2
Q ss_pred CCcccccccccccCCCceEEecCCCcccHHHHHHHHhcC-------CCCCCCcc
Q 018233 297 GGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKW-------GTFCPVCK 343 (359)
Q Consensus 297 ~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~-------~~~CPlCR 343 (359)
.-..|.||+++..-.+....|||+|+|++.|+...+..+ ...||-|+
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~ 236 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPK 236 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCC
Confidence 456999999997766888999999999999999998663 23587654
No 91
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.00023 Score=69.12 Aligned_cols=54 Identities=22% Similarity=0.575 Sum_probs=47.7
Q ss_pred CcccccccccccCC-CceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCCCCC
Q 018233 298 GETCAICLEDYQDG-EKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNSES 352 (359)
Q Consensus 298 ~~~C~ICLe~f~~~-~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~~~ 352 (359)
...|+||.++++.. +++..+-|||.+|.+||..||.+.+ .||.|++.++.....
T Consensus 196 v~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~-kl~~~~rel~~~~~e 250 (465)
T KOG0827|consen 196 VGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKR-KLPSCRRELPKNGFE 250 (465)
T ss_pred HhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHH-HhHHHHhhhhhhhHH
Confidence 56999999999988 8899999999999999999999966 499999998776443
No 92
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.23 E-value=0.0023 Score=63.94 Aligned_cols=56 Identities=27% Similarity=0.637 Sum_probs=45.2
Q ss_pred CCCCcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCCCCCc
Q 018233 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNSESN 353 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~~~~ 353 (359)
.+.+..|+||...+.+. +..+.|||.|+..|+..|+..+. .||.|++.+.......
T Consensus 18 ~~~~l~C~~C~~vl~~p--~~~~~cgh~fC~~C~~~~~~~~~-~cp~~~~~~~~~~~~~ 73 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDP--VQTTTCGHRFCAGCLLESLSNHQ-KCPVCRQELTQAEELP 73 (391)
T ss_pred CcccccCccccccccCC--CCCCCCCCcccccccchhhccCc-CCcccccccchhhccC
Confidence 34567999999998776 23358999999999999999966 5999998887665543
No 93
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.90 E-value=0.0042 Score=43.02 Aligned_cols=45 Identities=22% Similarity=0.612 Sum_probs=21.8
Q ss_pred cccccccccCCCceEEec--CCCcccHHHHHHHHhcCCCCCCCccccC
Q 018233 301 CAICLEDYQDGEKLKVLS--CKHEFHASCVDSWLTKWGTFCPVCKHDM 346 (359)
Q Consensus 301 C~ICLe~f~~~~~vr~Lp--C~H~FH~~CI~~Wl~~~~~~CPlCR~~i 346 (359)
|++|.+++...+ ...+| |++..+..|...-++.....||-||.+.
T Consensus 1 cp~C~e~~d~~d-~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETD-KDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCC-TT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCC-CccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 789999984443 24555 7899999998887764344699999864
No 94
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=95.69 E-value=0.0052 Score=49.45 Aligned_cols=34 Identities=24% Similarity=0.618 Sum_probs=28.4
Q ss_pred CCCCcccccccccccCCCceEEecCCCcccHHHHH
Q 018233 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVD 329 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~ 329 (359)
..+...|++|-..+.. ....+.||||+||..|+.
T Consensus 75 i~~~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 75 ITESTKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred ECCCCCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence 3456789999999877 567788999999999974
No 95
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.62 E-value=0.0056 Score=57.71 Aligned_cols=53 Identities=23% Similarity=0.545 Sum_probs=39.5
Q ss_pred cccccccccccCCCceEEec-CCCcccHHHHHHHHhcCCCCCCCc-cccCCCCCCCcc
Q 018233 299 ETCAICLEDYQDGEKLKVLS-CKHEFHASCVDSWLTKWGTFCPVC-KHDMRNNSESNE 354 (359)
Q Consensus 299 ~~C~ICLe~f~~~~~vr~Lp-C~H~FH~~CI~~Wl~~~~~~CPlC-R~~i~~~~~~~~ 354 (359)
-.|+.|-.-.... ++ +| |+|.|+.+||..-|......||.| |++|..+....+
T Consensus 275 LkCplc~~Llrnp--~k-T~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD 329 (427)
T COG5222 275 LKCPLCHCLLRNP--MK-TPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPD 329 (427)
T ss_pred ccCcchhhhhhCc--cc-CccccchHHHHHHhhhhhhccccCCCcccccchhhccCcc
Confidence 5899998876554 33 35 799999999998888777779999 556655544443
No 96
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.58 E-value=0.013 Score=54.06 Aligned_cols=56 Identities=16% Similarity=0.268 Sum_probs=47.1
Q ss_pred CCcccccccccccCCCceEEe-cCCCcccHHHHHHHHhcCCCCCCCccccCCCCCCCc
Q 018233 297 GGETCAICLEDYQDGEKLKVL-SCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNSESN 353 (359)
Q Consensus 297 ~~~~C~ICLe~f~~~~~vr~L-pC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~~~~ 353 (359)
....|+||.+.+.+...+.+| ||||+|..+|++..+.... .||+|-.++.+.+.-.
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~-v~pv~d~plkdrdiI~ 276 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDM-VDPVTDKPLKDRDIIG 276 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccc-cccCCCCcCcccceEe
Confidence 456999999999999888888 7999999999999877755 5999988887665443
No 97
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.46 E-value=0.015 Score=54.44 Aligned_cols=53 Identities=17% Similarity=0.345 Sum_probs=39.7
Q ss_pred CCCCcccccccccccCCCceEEecCCCcccHHHHHHHHhcC-CCCCCCccccCCCC
Q 018233 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKW-GTFCPVCKHDMRNN 349 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~-~~~CPlCR~~i~~~ 349 (359)
...+.+|++|-+. +.......+|+|+||.-||..=+... ..+||.|-.++...
T Consensus 236 ~t~~~~C~~Cg~~--PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~l 289 (298)
T KOG2879|consen 236 GTSDTECPVCGEP--PTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVEPL 289 (298)
T ss_pred ccCCceeeccCCC--CCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCcch
Confidence 4567899999988 33345667899999999998755432 24699998887744
No 98
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=95.36 E-value=0.009 Score=42.42 Aligned_cols=48 Identities=25% Similarity=0.547 Sum_probs=34.5
Q ss_pred CCcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCCC
Q 018233 297 GGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNS 350 (359)
Q Consensus 297 ~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~ 350 (359)
....|..|... +.+-.++||+|+.+..|.+-+ +.+ -||+|.+++...+
T Consensus 6 ~~~~~~~~~~~---~~~~~~~pCgH~I~~~~f~~~--rYn-gCPfC~~~~~~~~ 53 (55)
T PF14447_consen 6 PEQPCVFCGFV---GTKGTVLPCGHLICDNCFPGE--RYN-GCPFCGTPFEFDD 53 (55)
T ss_pred cceeEEEcccc---ccccccccccceeeccccChh--hcc-CCCCCCCcccCCC
Confidence 34567766666 333478999999999998764 223 4999999887654
No 99
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=95.35 E-value=0.0086 Score=60.50 Aligned_cols=53 Identities=25% Similarity=0.652 Sum_probs=40.8
Q ss_pred CCCCCcccccccccccCCCceEEecCCCcccHHHHHHHHhc----CCCCCCCccccCCCC
Q 018233 294 QCHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTK----WGTFCPVCKHDMRNN 349 (359)
Q Consensus 294 ~~~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~----~~~~CPlCR~~i~~~ 349 (359)
...+..+|-+|-++-++ ..+..|.|.||+-||.++... .+.+||.|...+..+
T Consensus 532 enk~~~~C~lc~d~aed---~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 532 ENKGEVECGLCHDPAED---YIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred cccCceeecccCChhhh---hHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 35667799999988443 356779999999999887755 456799998777554
No 100
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.28 E-value=0.021 Score=55.04 Aligned_cols=63 Identities=22% Similarity=0.402 Sum_probs=40.9
Q ss_pred hccceeeeccCCCcCCCCCcccccccccccCCCceEEecCCCcccHHHHHHHHh-cCCCCCCCccccC
Q 018233 280 EALPCFLFSSASSSQCHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLT-KWGTFCPVCKHDM 346 (359)
Q Consensus 280 ~~lp~~~~~~~~~~~~~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~-~~~~~CPlCR~~i 346 (359)
...|....++.++ ..++...|.||-+...- ..++||+|..|-.|--.--. ..+..||+||..-
T Consensus 44 saEPnlttsSadd-tDEen~~C~ICA~~~TY---s~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 44 SAEPNLTTSSADD-TDEENMNCQICAGSTTY---SARYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred ccCCccccccccc-cccccceeEEecCCceE---EEeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 3344444444333 36677899999988544 47899999999899543211 1233599999764
No 101
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=95.20 E-value=0.0071 Score=57.96 Aligned_cols=53 Identities=25% Similarity=0.590 Sum_probs=42.0
Q ss_pred CCCCcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCCC
Q 018233 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNS 350 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~ 350 (359)
.....+|.+|-.-|-+.. .+..|=|.||+.||...|...+ +||.|...|....
T Consensus 12 ~n~~itC~LC~GYliDAT--TI~eCLHTFCkSCivk~l~~~~-~CP~C~i~ih~t~ 64 (331)
T KOG2660|consen 12 LNPHITCRLCGGYLIDAT--TITECLHTFCKSCIVKYLEESK-YCPTCDIVIHKTH 64 (331)
T ss_pred cccceehhhccceeecch--hHHHHHHHHHHHHHHHHHHHhc-cCCccceeccCcc
Confidence 345679999988877653 3446999999999999999966 5999988776553
No 102
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.19 E-value=0.0059 Score=57.49 Aligned_cols=41 Identities=27% Similarity=0.681 Sum_probs=30.7
Q ss_pred CcccccccccccCCCceEEecCCC-cccHHHHHHHHhcCCCCCCCccccC
Q 018233 298 GETCAICLEDYQDGEKLKVLSCKH-EFHASCVDSWLTKWGTFCPVCKHDM 346 (359)
Q Consensus 298 ~~~C~ICLe~f~~~~~vr~LpC~H-~FH~~CI~~Wl~~~~~~CPlCR~~i 346 (359)
...|+||++. ...+..|+||| +-+.+|=.. -..||+||+-|
T Consensus 300 ~~LC~ICmDa---P~DCvfLeCGHmVtCt~CGkr-----m~eCPICRqyi 341 (350)
T KOG4275|consen 300 RRLCAICMDA---PRDCVFLECGHMVTCTKCGKR-----MNECPICRQYI 341 (350)
T ss_pred HHHHHHHhcC---CcceEEeecCcEEeehhhccc-----cccCchHHHHH
Confidence 5689999998 45578999999 456677422 22599999865
No 103
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=95.13 E-value=0.0078 Score=53.64 Aligned_cols=45 Identities=31% Similarity=0.576 Sum_probs=37.0
Q ss_pred CcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccC
Q 018233 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDM 346 (359)
Q Consensus 298 ~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i 346 (359)
...|.||-++|+.. .++.|||.||..|...=++... .|-+|....
T Consensus 196 PF~C~iCKkdy~sp---vvt~CGH~FC~~Cai~~y~kg~-~C~~Cgk~t 240 (259)
T COG5152 196 PFLCGICKKDYESP---VVTECGHSFCSLCAIRKYQKGD-ECGVCGKAT 240 (259)
T ss_pred ceeehhchhhccch---hhhhcchhHHHHHHHHHhccCC-cceecchhh
Confidence 45999999999987 6778999999999887666644 599997653
No 104
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.11 E-value=0.014 Score=56.28 Aligned_cols=49 Identities=20% Similarity=0.481 Sum_probs=40.3
Q ss_pred CCCcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCC
Q 018233 296 HGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRN 348 (359)
Q Consensus 296 ~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (359)
.+++.|+||... .-.-...||+|.=|..||.+-+...+. |=.|+..+..
T Consensus 420 sEd~lCpICyA~---pi~Avf~PC~H~SC~~CI~qHlmN~k~-CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAG---PINAVFAPCSHRSCYGCITQHLMNCKR-CFFCKTTVID 468 (489)
T ss_pred cccccCcceecc---cchhhccCCCCchHHHHHHHHHhcCCe-eeEecceeee
Confidence 567899999876 223367899999999999999988774 9999998864
No 105
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.05 E-value=0.015 Score=55.81 Aligned_cols=49 Identities=31% Similarity=0.720 Sum_probs=41.5
Q ss_pred CcccccccccccCCCc---eEEecCCCcccHHHHHHHHhcCCCCCCCccccC
Q 018233 298 GETCAICLEDYQDGEK---LKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDM 346 (359)
Q Consensus 298 ~~~C~ICLe~f~~~~~---vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i 346 (359)
...|-||-++|+.++. -|.|.|||.|+..|+..-+......||.||...
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CCceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 4689999999998853 367779999999999998888766799999885
No 106
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=95.03 E-value=0.007 Score=57.88 Aligned_cols=57 Identities=28% Similarity=0.529 Sum_probs=39.9
Q ss_pred eeccCCCcCCCCCcccccccccccCCCceEEec-CCCcccHHHHHHHHhcCCCCCCCccccC
Q 018233 286 LFSSASSSQCHGGETCAICLEDYQDGEKLKVLS-CKHEFHASCVDSWLTKWGTFCPVCKHDM 346 (359)
Q Consensus 286 ~~~~~~~~~~~~~~~C~ICLe~f~~~~~vr~Lp-C~H~FH~~CI~~Wl~~~~~~CPlCR~~i 346 (359)
++.+.......+...|+||+....+.. ++. -|-+||..|+-..+.+++. ||+=..+.
T Consensus 288 ~~~se~e~l~~~~~~CpvClk~r~Npt---vl~vSGyVfCY~Ci~~Yv~~~~~-CPVT~~p~ 345 (357)
T KOG0826|consen 288 QYNSESELLPPDREVCPVCLKKRQNPT---VLEVSGYVFCYPCIFSYVVNYGH-CPVTGYPA 345 (357)
T ss_pred hcccccccCCCccccChhHHhccCCCc---eEEecceEEeHHHHHHHHHhcCC-CCccCCcc
Confidence 344333333456779999999955542 222 4899999999999998885 99865443
No 107
>PHA03096 p28-like protein; Provisional
Probab=94.61 E-value=0.018 Score=55.00 Aligned_cols=45 Identities=33% Similarity=0.656 Sum_probs=32.5
Q ss_pred cccccccccccCC----CceEEec-CCCcccHHHHHHHHhcCC--CCCCCcc
Q 018233 299 ETCAICLEDYQDG----EKLKVLS-CKHEFHASCVDSWLTKWG--TFCPVCK 343 (359)
Q Consensus 299 ~~C~ICLe~f~~~----~~vr~Lp-C~H~FH~~CI~~Wl~~~~--~~CPlCR 343 (359)
..|.|||+..... ..--.|+ |.|.|+..|+..|..... ..||.||
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~ 230 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENR 230 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCcccc
Confidence 6899999986543 2334666 999999999999987632 2355554
No 108
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.04 E-value=0.019 Score=54.22 Aligned_cols=48 Identities=25% Similarity=0.384 Sum_probs=39.4
Q ss_pred CCcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCC
Q 018233 297 GGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRN 348 (359)
Q Consensus 297 ~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (359)
-...|-||...|... .++.|+|.|+..|...=+++.. .|++|-+++..
T Consensus 240 ~Pf~c~icr~~f~~p---Vvt~c~h~fc~~ca~~~~qk~~-~c~vC~~~t~g 287 (313)
T KOG1813|consen 240 LPFKCFICRKYFYRP---VVTKCGHYFCEVCALKPYQKGE-KCYVCSQQTHG 287 (313)
T ss_pred CCccccccccccccc---hhhcCCceeehhhhccccccCC-cceeccccccc
Confidence 356899999999987 6778999999999877777755 49999877643
No 109
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.97 E-value=0.03 Score=51.66 Aligned_cols=51 Identities=22% Similarity=0.542 Sum_probs=36.1
Q ss_pred cccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCCCCCc
Q 018233 299 ETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNSESN 353 (359)
Q Consensus 299 ~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~~~~ 353 (359)
..|--|..-=. ++....+.|+|+||..|...= +...||+||..|.......
T Consensus 4 VhCn~C~~~~~-~~~f~LTaC~HvfC~~C~k~~---~~~~C~lCkk~ir~i~l~~ 54 (233)
T KOG4739|consen 4 VHCNKCFRFPS-QDPFFLTACRHVFCEPCLKAS---SPDVCPLCKKSIRIIQLNR 54 (233)
T ss_pred EEeccccccCC-CCceeeeechhhhhhhhcccC---Cccccccccceeeeeeccc
Confidence 35676665533 788999999999999997542 2225999999875544433
No 110
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.86 E-value=0.033 Score=59.40 Aligned_cols=42 Identities=21% Similarity=0.594 Sum_probs=32.5
Q ss_pred CcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCcccc
Q 018233 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHD 345 (359)
Q Consensus 298 ~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~ 345 (359)
...|..|--.++.+ .+.--|||.||.+|++ .+...||.|+.+
T Consensus 840 ~skCs~C~~~LdlP--~VhF~CgHsyHqhC~e----~~~~~CP~C~~e 881 (933)
T KOG2114|consen 840 VSKCSACEGTLDLP--FVHFLCGHSYHQHCLE----DKEDKCPKCLPE 881 (933)
T ss_pred eeeecccCCccccc--eeeeecccHHHHHhhc----cCcccCCccchh
Confidence 36999999887765 3444599999999998 334469999874
No 111
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=93.86 E-value=0.024 Score=53.62 Aligned_cols=45 Identities=29% Similarity=0.620 Sum_probs=38.3
Q ss_pred cccccccccccCCC-ceEEecCCCcccHHHHHHHHhcCCCCCCCccc
Q 018233 299 ETCAICLEDYQDGE-KLKVLSCKHEFHASCVDSWLTKWGTFCPVCKH 344 (359)
Q Consensus 299 ~~C~ICLe~f~~~~-~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~ 344 (359)
..|+||.+.+-... .+..++|||.-|..|+.+-...+ ..||+|..
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~ 204 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK 204 (276)
T ss_pred CCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence 34999999976664 56788999999999999988887 77999987
No 112
>PF04641 Rtf2: Rtf2 RING-finger
Probab=93.80 E-value=0.1 Score=49.24 Aligned_cols=53 Identities=19% Similarity=0.465 Sum_probs=40.8
Q ss_pred CCCCcccccccccccCCCceEEe-cCCCcccHHHHHHHHhcCCCCCCCccccCCCC
Q 018233 295 CHGGETCAICLEDYQDGEKLKVL-SCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~~~vr~L-pC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (359)
......|+|...+|........| ||||+|-..+|.+- . ....||+|-.++...
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k-~~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-K-KSKKCPVCGKPFTEE 163 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-c-ccccccccCCccccC
Confidence 45567999999999666565555 89999999999996 2 233599998887643
No 113
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=93.61 E-value=0.035 Score=37.65 Aligned_cols=42 Identities=24% Similarity=0.694 Sum_probs=24.5
Q ss_pred cccccccccCCCceEEecCCCcccHHHHHHHHhcCCC-CCCCc
Q 018233 301 CAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGT-FCPVC 342 (359)
Q Consensus 301 C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~-~CPlC 342 (359)
|.+|.+-...|.....-.|+=.+|..|+..++..++. .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 6778888777754444458889999999999988663 39988
No 114
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=93.54 E-value=0.044 Score=58.42 Aligned_cols=49 Identities=29% Similarity=0.659 Sum_probs=37.2
Q ss_pred CCCcccccccccccCCCceEEe-cCCCcccHHHHHHHHhcCC------CCCCCccc
Q 018233 296 HGGETCAICLEDYQDGEKLKVL-SCKHEFHASCVDSWLTKWG------TFCPVCKH 344 (359)
Q Consensus 296 ~~~~~C~ICLe~f~~~~~vr~L-pC~H~FH~~CI~~Wl~~~~------~~CPlCR~ 344 (359)
....+|.||.+.+...+.+=.- .|-|+||-.||..|-.... =.||.|+.
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs 244 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS 244 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence 4567999999998877644221 3889999999999987632 14999983
No 115
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=93.35 E-value=0.057 Score=51.94 Aligned_cols=55 Identities=16% Similarity=0.451 Sum_probs=38.8
Q ss_pred CCCcccccccccccCCCce-EEecCCCcccHHHHHHHHhcCCCCCCCccccCCCCC
Q 018233 296 HGGETCAICLEDYQDGEKL-KVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNS 350 (359)
Q Consensus 296 ~~~~~C~ICLe~f~~~~~v-r~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~ 350 (359)
++++.|+.|+|++...|+- .--|||-..|.-|...--+.-+.+||-||+...+++
T Consensus 12 deed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~den 67 (480)
T COG5175 12 DEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDEN 67 (480)
T ss_pred cccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence 3467799999999888753 344688877777865543333346999998776553
No 116
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=93.21 E-value=0.18 Score=43.99 Aligned_cols=38 Identities=21% Similarity=0.197 Sum_probs=29.9
Q ss_pred CCcceEEEEEcCCCCh-------------------HHHHHHHHHcCCcEEEEecccC
Q 018233 145 ADHINFVLIVRGQCIF-------------------EDKIRNAQAAGYRAAIVYNDRE 182 (359)
Q Consensus 145 ~~~~~ivLV~RG~CsF-------------------~~K~~~Aq~aGA~avIi~n~~~ 182 (359)
+.++|||||.+|+=.| ..|.+.|+++||.|||++++..
T Consensus 47 DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~~~ 103 (157)
T cd04821 47 DVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHETE 103 (157)
T ss_pred CcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeCCC
Confidence 4578888888775433 3599999999999999997643
No 117
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.86 E-value=0.052 Score=58.28 Aligned_cols=36 Identities=22% Similarity=0.461 Sum_probs=29.7
Q ss_pred CCCCcccccccccccCCCceEEecCCCcccHHHHHHH
Q 018233 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSW 331 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~W 331 (359)
.+.+++|.+|.-.+... .-.+-||||.||++||..=
T Consensus 814 ~ep~d~C~~C~~~ll~~-pF~vf~CgH~FH~~Cl~~~ 849 (911)
T KOG2034|consen 814 LEPQDSCDHCGRPLLIK-PFYVFPCGHCFHRDCLIRH 849 (911)
T ss_pred ecCccchHHhcchhhcC-cceeeeccchHHHHHHHHH
Confidence 45688999999887665 5567799999999999754
No 118
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=92.72 E-value=0.047 Score=58.16 Aligned_cols=47 Identities=21% Similarity=0.682 Sum_probs=38.0
Q ss_pred cccccccccccCCCceEEecCCCcccHHHHHHHHhcCCC-CCCCccccCCCC
Q 018233 299 ETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGT-FCPVCKHDMRNN 349 (359)
Q Consensus 299 ~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~-~CPlCR~~i~~~ 349 (359)
..|.||++ .+.....+|+|.|+.+|+..-++.... .||+||..+...
T Consensus 455 ~~c~ic~~----~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~ 502 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEK 502 (674)
T ss_pred cccccccc----cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHH
Confidence 79999999 455678899999999999887766433 499999877544
No 119
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=92.07 E-value=0.11 Score=44.97 Aligned_cols=57 Identities=21% Similarity=0.585 Sum_probs=35.6
Q ss_pred CcccccccccccCCC---------ceEEecCCC-cccHHHHHHHHhcC------------------------------CC
Q 018233 298 GETCAICLEDYQDGE---------KLKVLSCKH-EFHASCVDSWLTKW------------------------------GT 337 (359)
Q Consensus 298 ~~~C~ICLe~f~~~~---------~vr~LpC~H-~FH~~CI~~Wl~~~------------------------------~~ 337 (359)
+..|+||||-=.+.- -+|---|+- .=|..||++.-+.. +.
T Consensus 2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 81 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQPEL 81 (162)
T ss_pred CccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCcccccccccccccc
Confidence 568999999822220 012222543 34888999875431 22
Q ss_pred CCCCccccCCCCCCCcc
Q 018233 338 FCPVCKHDMRNNSESNE 354 (359)
Q Consensus 338 ~CPlCR~~i~~~~~~~~ 354 (359)
.||+||.+|......++
T Consensus 82 ~CPLCRG~V~GWtvve~ 98 (162)
T PF07800_consen 82 ACPLCRGEVKGWTVVEP 98 (162)
T ss_pred cCccccCceeceEEchH
Confidence 59999999977765554
No 120
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=91.90 E-value=0.19 Score=35.76 Aligned_cols=34 Identities=26% Similarity=0.813 Sum_probs=29.2
Q ss_pred CCcccccccccccCCCceEEec-CCCcccHHHHHH
Q 018233 297 GGETCAICLEDYQDGEKLKVLS-CKHEFHASCVDS 330 (359)
Q Consensus 297 ~~~~C~ICLe~f~~~~~vr~Lp-C~H~FH~~CI~~ 330 (359)
....|.+|-+.|++++.+.+-| |+-.||++|-+.
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 4578999999999888777777 999999999654
No 121
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=91.70 E-value=0.17 Score=49.81 Aligned_cols=31 Identities=19% Similarity=0.670 Sum_probs=23.6
Q ss_pred CCCcccHHHHHHHHhcCC------------CCCCCccccCCCC
Q 018233 319 CKHEFHASCVDSWLTKWG------------TFCPVCKHDMRNN 349 (359)
Q Consensus 319 C~H~FH~~CI~~Wl~~~~------------~~CPlCR~~i~~~ 349 (359)
|.-.+|.+|+-+|+..++ ..||+||+.+...
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCil 353 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCIL 353 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceee
Confidence 456788999999997643 2699999987543
No 122
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=91.17 E-value=0.15 Score=54.34 Aligned_cols=54 Identities=22% Similarity=0.586 Sum_probs=41.0
Q ss_pred CCCCcccccccccccCCCceEEecCCC-----cccHHHHHHHHhcCC-CCCCCccccCCCC
Q 018233 295 CHGGETCAICLEDYQDGEKLKVLSCKH-----EFHASCVDSWLTKWG-TFCPVCKHDMRNN 349 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~~~vr~LpC~H-----~FH~~CI~~Wl~~~~-~~CPlCR~~i~~~ 349 (359)
.++...|-||..+=.+++.+ .-||+. ..|++|+.+|+.... +.|-+|+.++.-+
T Consensus 9 N~d~~~CRICr~e~~~d~pL-fhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk 68 (1175)
T COG5183 9 NEDKRSCRICRTEDIRDDPL-FHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFK 68 (1175)
T ss_pred CccchhceeecCCCCCCCcC-cccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeee
Confidence 34568999999886666655 347754 589999999998754 3599999887554
No 123
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.89 E-value=0.12 Score=47.96 Aligned_cols=52 Identities=25% Similarity=0.583 Sum_probs=37.6
Q ss_pred CCCCcccccccccccCCCce-EEecC-----CCcccHHHHHHHHhcCC-------CCCCCccccC
Q 018233 295 CHGGETCAICLEDYQDGEKL-KVLSC-----KHEFHASCVDSWLTKWG-------TFCPVCKHDM 346 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~~~v-r~LpC-----~H~FH~~CI~~Wl~~~~-------~~CPlCR~~i 346 (359)
.+.+..|=||+..=+++..- =+-|| .|-.|..||..|+..++ .+||-|+++.
T Consensus 17 ~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEY 81 (293)
T KOG3053|consen 17 QELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEY 81 (293)
T ss_pred cccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchh
Confidence 44577999999884444211 24576 47899999999997632 3699998875
No 124
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.49 E-value=0.1 Score=47.61 Aligned_cols=40 Identities=28% Similarity=0.714 Sum_probs=29.3
Q ss_pred cccccccccCCCceEEecCCC-cccHHHHHHHHhcCCCCCCCccccCCC
Q 018233 301 CAICLEDYQDGEKLKVLSCKH-EFHASCVDSWLTKWGTFCPVCKHDMRN 348 (359)
Q Consensus 301 C~ICLe~f~~~~~vr~LpC~H-~FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (359)
|-.|-+. +-.|..|||.| .+|..|=+. -..||+|+.....
T Consensus 161 Cr~C~~~---~~~VlllPCrHl~lC~~C~~~-----~~~CPiC~~~~~s 201 (207)
T KOG1100|consen 161 CRKCGER---EATVLLLPCRHLCLCGICDES-----LRICPICRSPKTS 201 (207)
T ss_pred ceecCcC---CceEEeecccceEeccccccc-----CccCCCCcChhhc
Confidence 7777776 55688999987 688888543 1249999976544
No 125
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=90.25 E-value=0.17 Score=48.67 Aligned_cols=44 Identities=20% Similarity=0.560 Sum_probs=34.9
Q ss_pred CCCcccccccccccCCCceEEecC--CCcccHHHHHHHHhcCCCCCCCccccCC
Q 018233 296 HGGETCAICLEDYQDGEKLKVLSC--KHEFHASCVDSWLTKWGTFCPVCKHDMR 347 (359)
Q Consensus 296 ~~~~~C~ICLe~f~~~~~vr~LpC--~H~FH~~CI~~Wl~~~~~~CPlCR~~i~ 347 (359)
.+-.+|+||.+.+... +..| ||+-+..|-.+ . .+.||.||.++.
T Consensus 46 ~~lleCPvC~~~l~~P----i~QC~nGHlaCssC~~~---~-~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLSPP----IFQCDNGHLACSSCRTK---V-SNKCPTCRLPIG 91 (299)
T ss_pred hhhccCchhhccCccc----ceecCCCcEehhhhhhh---h-cccCCccccccc
Confidence 3456999999998886 5567 89999999753 2 335999999987
No 126
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.16 E-value=0.22 Score=43.83 Aligned_cols=53 Identities=26% Similarity=0.634 Sum_probs=36.7
Q ss_pred CCcccccccccccCCC----ceEEecCCCcccHHHHHHHHhc----CC------CCCCCccccCCCC
Q 018233 297 GGETCAICLEDYQDGE----KLKVLSCKHEFHASCVDSWLTK----WG------TFCPVCKHDMRNN 349 (359)
Q Consensus 297 ~~~~C~ICLe~f~~~~----~vr~LpC~H~FH~~CI~~Wl~~----~~------~~CPlCR~~i~~~ 349 (359)
.-..|.||..---.|. .+--..||.-||.-|+..||+. ++ ..||.|-.+|..+
T Consensus 164 ~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK 230 (234)
T KOG3268|consen 164 ELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK 230 (234)
T ss_pred hhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence 3458888875433331 2334469999999999999865 21 1499998887655
No 127
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=89.87 E-value=0.29 Score=46.37 Aligned_cols=51 Identities=33% Similarity=0.690 Sum_probs=38.6
Q ss_pred cccccccc-ccCCC-ceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCCC
Q 018233 300 TCAICLED-YQDGE-KLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNS 350 (359)
Q Consensus 300 ~C~ICLe~-f~~~~-~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~ 350 (359)
.|++|-.+ |-..+ .+.+=||+|..|.+|++.-+......||-|-..+..+.
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~n 54 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNN 54 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhcc
Confidence 68999876 33333 33344899999999999999998878999977664443
No 128
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=89.63 E-value=0.15 Score=48.64 Aligned_cols=42 Identities=26% Similarity=0.607 Sum_probs=27.0
Q ss_pred ccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccC
Q 018233 300 TCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDM 346 (359)
Q Consensus 300 ~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i 346 (359)
.|--|=-.+. -.-|.+||+|+||.+|-.. . ..+.||.|--.|
T Consensus 92 fCd~Cd~PI~--IYGRmIPCkHvFCl~CAr~--~-~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 92 FCDRCDFPIA--IYGRMIPCKHVFCLECARS--D-SDKICPLCDDRV 133 (389)
T ss_pred eecccCCcce--eeecccccchhhhhhhhhc--C-ccccCcCcccHH
Confidence 4555533322 2348899999999999653 1 133699995444
No 129
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=89.42 E-value=0.22 Score=47.79 Aligned_cols=52 Identities=31% Similarity=0.731 Sum_probs=38.2
Q ss_pred CcccccccccccCCCc-eEEecCC-----CcccHHHHHHHHhcCC-CCCCCccccCCCC
Q 018233 298 GETCAICLEDYQDGEK-LKVLSCK-----HEFHASCVDSWLTKWG-TFCPVCKHDMRNN 349 (359)
Q Consensus 298 ~~~C~ICLe~f~~~~~-vr~LpC~-----H~FH~~CI~~Wl~~~~-~~CPlCR~~i~~~ 349 (359)
+..|-||.++....+. ....||. +..|+.|++.|+..++ ..|.+|.......
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~ 136 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINV 136 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceec
Confidence 4789999998665432 4566873 5689999999998644 4599998765433
No 130
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=87.89 E-value=0.18 Score=56.31 Aligned_cols=47 Identities=32% Similarity=0.709 Sum_probs=38.0
Q ss_pred CCcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccC
Q 018233 297 GGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDM 346 (359)
Q Consensus 297 ~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i 346 (359)
....|.||++.+..-. .+..|+|.++..|+..|+..+. .||+|+...
T Consensus 1152 ~~~~c~ic~dil~~~~--~I~~cgh~~c~~c~~~~l~~~s-~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQG--GIAGCGHEPCCRCDELWLYASS-RCPICKSIK 1198 (1394)
T ss_pred cccchHHHHHHHHhcC--CeeeechhHhhhHHHHHHHHhc-cCcchhhhh
Confidence 3459999999987432 4556999999999999999977 499998543
No 131
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.02 E-value=0.22 Score=51.79 Aligned_cols=46 Identities=28% Similarity=0.491 Sum_probs=33.9
Q ss_pred CcccccccccccCCCc-eEEecCCCcccHHHHHHHHhcCCCCCCCccccCC
Q 018233 298 GETCAICLEDYQDGEK-LKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMR 347 (359)
Q Consensus 298 ~~~C~ICLe~f~~~~~-vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~ 347 (359)
.-.|.||+..|..... -+.|.|||..|+.|+..-... +|| |+++=.
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~---scp-~~~De~ 57 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNA---SCP-TKRDED 57 (861)
T ss_pred HhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhc---cCC-CCcccc
Confidence 4589999998876643 245669999999999875443 599 876543
No 132
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.30 E-value=0.74 Score=45.50 Aligned_cols=49 Identities=20% Similarity=0.367 Sum_probs=40.9
Q ss_pred CCCCcccccccccccCCCceEEecCCCcccHHHHHHHHhcCC--CCCCCcc
Q 018233 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWG--TFCPVCK 343 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~--~~CPlCR 343 (359)
..+-..|+|=.+.=.+.+.-..|.|||+..++-|..-.+... ..||.|=
T Consensus 331 fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP 381 (394)
T KOG2817|consen 331 FHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCP 381 (394)
T ss_pred ccceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCC
Confidence 445679999988888888888999999999999999777655 5699993
No 133
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=84.75 E-value=0.56 Score=49.74 Aligned_cols=25 Identities=32% Similarity=0.745 Sum_probs=21.3
Q ss_pred EecCCCcccHHHHHHHHhcCCCCCCC
Q 018233 316 VLSCKHEFHASCVDSWLTKWGTFCPV 341 (359)
Q Consensus 316 ~LpC~H~FH~~CI~~Wl~~~~~~CPl 341 (359)
...|+|+-|.+|..+|+.... .||.
T Consensus 1045 Cg~C~Hv~H~sc~~eWf~~gd-~Cps 1069 (1081)
T KOG0309|consen 1045 CGTCGHVGHTSCMMEWFRTGD-VCPS 1069 (1081)
T ss_pred hccccccccHHHHHHHHhcCC-cCCC
Confidence 345999999999999999977 4984
No 134
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=84.62 E-value=0.35 Score=50.42 Aligned_cols=42 Identities=24% Similarity=0.726 Sum_probs=28.9
Q ss_pred CCccccccccc-----ccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCc
Q 018233 297 GGETCAICLED-----YQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVC 342 (359)
Q Consensus 297 ~~~~C~ICLe~-----f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlC 342 (359)
....|.+|-.+ |+.....+-..|+++||+.|+.. .+..||.|
T Consensus 510 ~gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r----~s~~CPrC 556 (580)
T KOG1829|consen 510 KGFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR----KSPCCPRC 556 (580)
T ss_pred CeeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc----cCCCCCch
Confidence 45688888332 54444456667999999999754 34449999
No 135
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.34 E-value=0.55 Score=49.07 Aligned_cols=52 Identities=27% Similarity=0.742 Sum_probs=42.2
Q ss_pred CCCCcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCCCCCcc
Q 018233 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNSESNE 354 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~~~~~ 354 (359)
.+..+.|.||+++. ..+..+|. |..|+..|+..+.. ||+|+..+..+...+.
T Consensus 476 ~~~~~~~~~~~~~~----~~~~~~~~---~~~~l~~~~~~~~~-~pl~~~~~~~~~~~~~ 527 (543)
T KOG0802|consen 476 REPNDVCAICYQEM----SARITPCS---HALCLRKWLYVQEV-CPLCHTYMKEDDFLSK 527 (543)
T ss_pred hcccCcchHHHHHH----Hhcccccc---chhHHHhhhhhccc-cCCCchhhhcccccCc
Confidence 45678999999998 45788898 99999999999774 9999988766655443
No 136
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.40 E-value=0.61 Score=46.64 Aligned_cols=39 Identities=28% Similarity=0.636 Sum_probs=29.6
Q ss_pred CCccccccccc-ccCCCceEEecCCCcccHHHHHHHHhcC
Q 018233 297 GGETCAICLED-YQDGEKLKVLSCKHEFHASCVDSWLTKW 335 (359)
Q Consensus 297 ~~~~C~ICLe~-f~~~~~vr~LpC~H~FH~~CI~~Wl~~~ 335 (359)
...+|.||+.+ ....+...++-|+|.|+.+|+.+-++.+
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~ 184 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVK 184 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhh
Confidence 46799999944 4443444566799999999999888754
No 137
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=82.24 E-value=1.2 Score=47.67 Aligned_cols=56 Identities=13% Similarity=0.184 Sum_probs=41.3
Q ss_pred CCCCcccccccccccCC-CceEEec---CCCcccHHHHHHHHhc-----CCCCCCCccccCCCCC
Q 018233 295 CHGGETCAICLEDYQDG-EKLKVLS---CKHEFHASCVDSWLTK-----WGTFCPVCKHDMRNNS 350 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~-~~vr~Lp---C~H~FH~~CI~~Wl~~-----~~~~CPlCR~~i~~~~ 350 (359)
....+.|.||.-++... |..-.+| |.|.||..||..|... ....|++|.+.|..+.
T Consensus 93 ~a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWs 157 (1134)
T KOG0825|consen 93 TAESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWS 157 (1134)
T ss_pred cccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhh
Confidence 34566888888888774 3344556 9999999999999866 2345899988876543
No 138
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=80.55 E-value=1 Score=41.63 Aligned_cols=48 Identities=27% Similarity=0.655 Sum_probs=36.7
Q ss_pred CCcccccccccc-cCCC-ceEEec-CCCcccHHHHHHHHhcCCCCCC--Cccc
Q 018233 297 GGETCAICLEDY-QDGE-KLKVLS-CKHEFHASCVDSWLTKWGTFCP--VCKH 344 (359)
Q Consensus 297 ~~~~C~ICLe~f-~~~~-~vr~Lp-C~H~FH~~CI~~Wl~~~~~~CP--lCR~ 344 (359)
.+..|+||..+. -..| ++-+-| |-|..|.+|++.-|......|| -|..
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHH
Confidence 356999999884 3333 334446 9999999999999999877899 7754
No 139
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.54 E-value=0.91 Score=43.09 Aligned_cols=30 Identities=20% Similarity=0.616 Sum_probs=23.1
Q ss_pred CCCcccHHHHHHHHhcC------------CCCCCCccccCCC
Q 018233 319 CKHEFHASCVDSWLTKW------------GTFCPVCKHDMRN 348 (359)
Q Consensus 319 C~H~FH~~CI~~Wl~~~------------~~~CPlCR~~i~~ 348 (359)
|.-.+|.+|+.+|+..+ +-+||+||..+..
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci 366 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCI 366 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEE
Confidence 56789999999998553 2369999988753
No 140
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=78.79 E-value=1.6 Score=27.59 Aligned_cols=38 Identities=24% Similarity=0.574 Sum_probs=26.4
Q ss_pred ccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCC
Q 018233 300 TCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMR 347 (359)
Q Consensus 300 ~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~ 347 (359)
.|..|-+.+..++.. +..=+..||.+|+ .|..|+..|.
T Consensus 1 ~C~~C~~~i~~~~~~-~~~~~~~~H~~Cf---------~C~~C~~~L~ 38 (39)
T smart00132 1 KCAGCGKPIRGGELV-LRALGKVWHPECF---------KCSKCGKPLG 38 (39)
T ss_pred CccccCCcccCCcEE-EEeCCccccccCC---------CCcccCCcCc
Confidence 377888887776322 2224789999995 5888887664
No 141
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=78.55 E-value=0.56 Score=49.65 Aligned_cols=53 Identities=28% Similarity=0.625 Sum_probs=41.1
Q ss_pred CcccccccccccCCCceEEecCCCcccHHHHHHHHhcCC--CCCCCccccCCCCCCCc
Q 018233 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWG--TFCPVCKHDMRNNSESN 353 (359)
Q Consensus 298 ~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~--~~CPlCR~~i~~~~~~~ 353 (359)
..+|.||+..+... ..+.|.|.|...|+..-|...+ ..||+|+..++-...++
T Consensus 21 ~lEc~ic~~~~~~p---~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~~E 75 (684)
T KOG4362|consen 21 ILECPICLEHVKEP---SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSLRE 75 (684)
T ss_pred hccCCceeEEeecc---chhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhccc
Confidence 56999999998887 4667999999999886555432 35999998876655544
No 142
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=77.98 E-value=3.7 Score=44.16 Aligned_cols=70 Identities=24% Similarity=0.225 Sum_probs=45.9
Q ss_pred cccccCCCCeeEEEeeCCCCCCCCCCCCCCCCCCCCcceEEEEEcCCCChHHHHHHHHHcCCcEEEEeccc
Q 018233 111 FAVDVNSSGTCGALHVADPADACSPLSNPVASNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDR 181 (359)
Q Consensus 111 FG~~~~~~~~~g~L~~~~p~~aC~~~~~~~~~~~~~~~~ivLV~RG~CsF~~K~~~Aq~aGA~avIi~n~~ 181 (359)
|+...+.....|.+|+.+-... +.+..-.......+++|+|++-|.=.+..|++||+++||.+||+|.+.
T Consensus 149 ~~~~s~~g~~~~~~Vy~N~~~~-~d~~~l~~~~i~~~g~i~l~r~~~i~~g~~~~na~~~~a~gviiy~d~ 218 (702)
T KOG2195|consen 149 FRAYSPSGSVTGELVYANYGRI-EDFYKLEDLGINLSGKIVLARVGKIYRGKKVKNAEAAGADGVIIYTDP 218 (702)
T ss_pred hhccCcCCCccceEEEEecCch-hhhhHhhcCcccccCceEEEEccccchhhhHhhHHHhhcCcEEEeecc
Confidence 4433444556777776643111 111000011122468999999999999999999999999999999864
No 144
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=75.86 E-value=1.9 Score=39.20 Aligned_cols=42 Identities=36% Similarity=0.796 Sum_probs=29.5
Q ss_pred CCccccccccc-----ccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccc
Q 018233 297 GGETCAICLED-----YQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKH 344 (359)
Q Consensus 297 ~~~~C~ICLe~-----f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~ 344 (359)
.+..|-||-++ |+.....+--.|+-+||++|... + .||.|.+
T Consensus 151 kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~-----~-~CpkC~R 197 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK-----K-SCPKCAR 197 (202)
T ss_pred CCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC-----C-CCCCcHh
Confidence 35688888764 55544444445999999999862 3 4999943
No 145
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=73.25 E-value=1.9 Score=43.05 Aligned_cols=36 Identities=22% Similarity=0.608 Sum_probs=30.7
Q ss_pred CCCcccccccccccCCCceEEecCCCcccHHHHHHHHhc
Q 018233 296 HGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTK 334 (359)
Q Consensus 296 ~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~ 334 (359)
+++-.|+||..-|++. .+|||+|..|..|-..-+.+
T Consensus 2 eeelkc~vc~~f~~ep---iil~c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREP---IILPCSHNLCQACARNILVQ 37 (699)
T ss_pred cccccCceehhhccCc---eEeecccHHHHHHHHhhccc
Confidence 3467999999999987 79999999999998876644
No 146
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.84 E-value=1.5 Score=46.86 Aligned_cols=45 Identities=22% Similarity=0.504 Sum_probs=33.8
Q ss_pred CCCcccccccccccCC----CceEEecCCCcccHHHHHHHHhcCCCCCCCc
Q 018233 296 HGGETCAICLEDYQDG----EKLKVLSCKHEFHASCVDSWLTKWGTFCPVC 342 (359)
Q Consensus 296 ~~~~~C~ICLe~f~~~----~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlC 342 (359)
...+.|.-|++..... +.+.++.|+|.||+.|+..-..+++ |-.|
T Consensus 782 ~~e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~--~~~~ 830 (846)
T KOG2066|consen 782 SVEERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA--CNIE 830 (846)
T ss_pred eehhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc--cChh
Confidence 3455899999886532 4678889999999999987666644 6555
No 147
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=70.92 E-value=1.7 Score=30.00 Aligned_cols=32 Identities=22% Similarity=0.691 Sum_probs=21.0
Q ss_pred ecC-CCcccHHHHHHHHhcCCCCCCCccccCCCC
Q 018233 317 LSC-KHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (359)
Q Consensus 317 LpC-~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (359)
..| .|..+-.|+..-+.... .||+|..+++.+
T Consensus 16 i~C~dHYLCl~CLt~ml~~s~-~C~iC~~~LPtk 48 (50)
T PF03854_consen 16 IKCSDHYLCLNCLTLMLSRSD-RCPICGKPLPTK 48 (50)
T ss_dssp EE-SS-EEEHHHHHHT-SSSS-EETTTTEE----
T ss_pred eeecchhHHHHHHHHHhcccc-CCCcccCcCccc
Confidence 348 59999999999887766 599999998765
No 148
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.22 E-value=3.8 Score=38.13 Aligned_cols=37 Identities=11% Similarity=0.201 Sum_probs=31.5
Q ss_pred CCCCcccccccccccCCCceEEecCCCcccHHHHHHHHhc
Q 018233 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTK 334 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~ 334 (359)
..+.+.|+.||..+.+. .+.|=||+|.++||.+.+..
T Consensus 40 iK~FdcCsLtLqPc~dP---vit~~GylfdrEaILe~ila 76 (303)
T KOG3039|consen 40 IKPFDCCSLTLQPCRDP---VITPDGYLFDREAILEYILA 76 (303)
T ss_pred cCCcceeeeecccccCC---ccCCCCeeeeHHHHHHHHHH
Confidence 45688999999998887 57778999999999998755
No 149
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=65.88 E-value=6.1 Score=33.38 Aligned_cols=51 Identities=25% Similarity=0.544 Sum_probs=34.9
Q ss_pred CCcccccccccccCCCceEEe-c---CCCcccHHHHHHHHhcC--CCCCCCccccCCCCC
Q 018233 297 GGETCAICLEDYQDGEKLKVL-S---CKHEFHASCVDSWLTKW--GTFCPVCKHDMRNNS 350 (359)
Q Consensus 297 ~~~~C~ICLe~f~~~~~vr~L-p---C~H~FH~~CI~~Wl~~~--~~~CPlCR~~i~~~~ 350 (359)
.-.+|.||.|.-.+. +.| | ||-..+..|-..-.+.- ...||.|++++-...
T Consensus 79 ~lYeCnIC~etS~ee---~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 79 KLYECNICKETSAEE---RFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred CceeccCcccccchh---hcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 457999999986655 444 3 89888888755433331 225999999875543
No 150
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=64.80 E-value=3.9 Score=38.52 Aligned_cols=50 Identities=18% Similarity=0.458 Sum_probs=35.7
Q ss_pred CCcccccccccccCCCceEEe-c---CCCcccHHHHHHHHhc-C-------CCCCCCccccC
Q 018233 297 GGETCAICLEDYQDGEKLKVL-S---CKHEFHASCVDSWLTK-W-------GTFCPVCKHDM 346 (359)
Q Consensus 297 ~~~~C~ICLe~f~~~~~vr~L-p---C~H~FH~~CI~~Wl~~-~-------~~~CPlCR~~i 346 (359)
...+|.+|.+++.+.+..+.. | |+-++|-.|+..-+.. + ...||.|++.+
T Consensus 181 ~~~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~ 242 (276)
T KOG3005|consen 181 LNVECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL 242 (276)
T ss_pred cchhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence 346999999999666655544 2 8889999999984332 1 22599998754
No 151
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=64.57 E-value=4 Score=28.54 Aligned_cols=40 Identities=20% Similarity=0.508 Sum_probs=29.3
Q ss_pred cccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCCC
Q 018233 301 CAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNS 350 (359)
Q Consensus 301 C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~ 350 (359)
|.-|-+.+..++.+ +..-+..||.+|+ .|-.|+.+|....
T Consensus 1 C~~C~~~I~~~~~~-~~~~~~~~H~~Cf---------~C~~C~~~l~~~~ 40 (58)
T PF00412_consen 1 CARCGKPIYGTEIV-IKAMGKFWHPECF---------KCSKCGKPLNDGD 40 (58)
T ss_dssp BTTTSSBESSSSEE-EEETTEEEETTTS---------BETTTTCBTTTSS
T ss_pred CCCCCCCccCcEEE-EEeCCcEEEcccc---------ccCCCCCccCCCe
Confidence 67788887766533 2347889999995 5999998887664
No 152
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=63.27 E-value=8 Score=26.89 Aligned_cols=41 Identities=24% Similarity=0.660 Sum_probs=19.0
Q ss_pred ccccccccccCCCceEEecCCCcccHHH--HHHHHhcC----CCCCCCcccc
Q 018233 300 TCAICLEDYQDGEKLKVLSCKHEFHASC--VDSWLTKW----GTFCPVCKHD 345 (359)
Q Consensus 300 ~C~ICLe~f~~~~~vr~LpC~H~FH~~C--I~~Wl~~~----~~~CPlCR~~ 345 (359)
.|+|....++. .+|...|.|. +| ++.||... .-.||+|.++
T Consensus 4 ~CPls~~~i~~--P~Rg~~C~H~---~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 4 RCPLSFQRIRI--PVRGKNCKHL---QCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp B-TTTSSB-SS--EEEETT--SS-----EEHHHHHHHHHHS---B-TTT---
T ss_pred eCCCCCCEEEe--CccCCcCccc---ceECHHHHHHHhhccCCeECcCCcCc
Confidence 57777777655 4677778887 34 33455442 2349999864
No 153
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=62.85 E-value=4.7 Score=41.08 Aligned_cols=38 Identities=32% Similarity=0.753 Sum_probs=32.3
Q ss_pred CCCcccccccccccCCCceEEecCCCcccHHHHHHHHhcC
Q 018233 296 HGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKW 335 (359)
Q Consensus 296 ~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~ 335 (359)
....+|-||.+.+.. .+..+.|+|.|+..|....+.++
T Consensus 68 ~~~~~c~ic~~~~~~--~~~~~~c~H~~c~~cw~~yl~~k 105 (444)
T KOG1815|consen 68 KGDVQCGICVESYDG--EIIGLGCGHPFCPPCWTGYLGTK 105 (444)
T ss_pred CccccCCcccCCCcc--hhhhcCCCcHHHHHHHHHHhhhe
Confidence 456799999999876 56778899999999999998773
No 154
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=61.96 E-value=12 Score=27.16 Aligned_cols=30 Identities=33% Similarity=0.424 Sum_probs=19.2
Q ss_pred CCchhhhhhhccchhhHHHHHHHHHHHHHH
Q 018233 54 CSNSQRAEGAKQESKMREKFLMKFLIIYLN 83 (359)
Q Consensus 54 ~~~~~~~~~~~~~~~m~~~~~~~~~~l~~~ 83 (359)
||+.=|.+-.+.-+||+..+.+++++++++
T Consensus 20 CS~~C~~~~~k~qk~~~~~~~i~~~~~i~~ 49 (59)
T PF09889_consen 20 CSPKCREEYRKRQKRMRKTQYIFFGIFILF 49 (59)
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566667777777777776665555444443
No 155
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=57.66 E-value=11 Score=36.69 Aligned_cols=68 Identities=21% Similarity=0.458 Sum_probs=44.6
Q ss_pred hhhhccceeeeccCCCcCCCCCcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCcccc
Q 018233 277 KVVEALPCFLFSSASSSQCHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHD 345 (359)
Q Consensus 277 ~~i~~lp~~~~~~~~~~~~~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~ 345 (359)
....-.|...|.+...........|-.|.++.......+--.|+|.|+.+|=. .+-..-..||-|.+.
T Consensus 309 SyhhL~PL~~F~Eip~~~~~~~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv-~iHesLh~CpgCeh~ 376 (378)
T KOG2807|consen 309 SYHHLFPLKPFVEIPETEYNGSRFCFACQGELLSSGRYRCESCKNVFCLDCDV-FIHESLHNCPGCEHK 376 (378)
T ss_pred HHHhhcCCcchhhccccccCCCcceeeeccccCCCCcEEchhccceeeccchH-HHHhhhhcCCCcCCC
Confidence 33334566667665555455566799998887777767766799999999932 111111239999743
No 156
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=57.21 E-value=11 Score=36.46 Aligned_cols=56 Identities=18% Similarity=0.398 Sum_probs=37.5
Q ss_pred CCCCCcccccccccc---------cC------CC-ceEEecCCCcccHHHHHHHHhcC--------CCCCCCccccCCCC
Q 018233 294 QCHGGETCAICLEDY---------QD------GE-KLKVLSCKHEFHASCVDSWLTKW--------GTFCPVCKHDMRNN 349 (359)
Q Consensus 294 ~~~~~~~C~ICLe~f---------~~------~~-~vr~LpC~H~FH~~CI~~Wl~~~--------~~~CPlCR~~i~~~ 349 (359)
....+.+|++|+..= +. |- .-..-||||+--++-..=|-+.. ...||.|-+.+..+
T Consensus 337 ~g~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge 416 (429)
T KOG3842|consen 337 TGQRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGE 416 (429)
T ss_pred cCcccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhccC
Confidence 355678999999761 11 11 12456899998888888887651 22599998877544
No 157
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=56.14 E-value=6 Score=36.04 Aligned_cols=42 Identities=26% Similarity=0.796 Sum_probs=32.9
Q ss_pred CcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCc
Q 018233 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVC 342 (359)
Q Consensus 298 ~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlC 342 (359)
-..|.+|-+-.-.+ +|-=.|+-.+|..|+...++... .||.|
T Consensus 181 lk~Cn~Ch~LvIqg--~rCg~c~i~~h~~c~qty~q~~~-~cphc 222 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQG--IRCGSCNIQYHRGCIQTYLQRRD-ICPHC 222 (235)
T ss_pred HHHHhHhHHHhhee--eccCcccchhhhHHHHHHhcccC-cCCch
Confidence 45899998875554 23335788899999999999944 69999
No 158
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=54.27 E-value=19 Score=26.29 Aligned_cols=57 Identities=18% Similarity=0.184 Sum_probs=33.4
Q ss_pred eEEEEEcCCCChHHHHHHHHH-cCCcEEEEecccCccccccccCCCCcceeeEEeechh
Q 018233 149 NFVLIVRGQCIFEDKIRNAQA-AGYRAAIVYNDREKGSLVSMTASHEGVKVHAIFVSLE 206 (359)
Q Consensus 149 ~ivLV~RG~CsF~~K~~~Aq~-aGA~avIi~n~~~~~~~~~m~~~~~~i~Ip~v~i~~~ 206 (359)
+|.|..+-+|++-.|++.+.+ .|..... .|-..+.....+.......++|+++|...
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~-~~v~~~~~~~~~~~~~g~~~vP~ifi~g~ 59 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEE-IPLGKDITGRSLRAVTGAMTVPQVFIDGE 59 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEE-EECCCChhHHHHHHHhCCCCcCeEEECCE
Confidence 578889999999999999875 5555433 33222111111111112347888887743
No 159
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.67 E-value=16 Score=34.27 Aligned_cols=52 Identities=13% Similarity=0.331 Sum_probs=36.9
Q ss_pred CCCcccccccccccCCCceEEe-cCCCcccHHHHHHHHhcCCCCCCCccccCCCCC
Q 018233 296 HGGETCAICLEDYQDGEKLKVL-SCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNS 350 (359)
Q Consensus 296 ~~~~~C~ICLe~f~~~~~vr~L-pC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~ 350 (359)
.....|+|---+|........| +|||+|-..-+.+-- ...|++|...+...+
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik---as~C~~C~a~y~~~d 161 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK---ASVCHVCGAAYQEDD 161 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhh---hccccccCCcccccC
Confidence 3455899987777766544334 799999999887732 235999998876543
No 160
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=48.81 E-value=7.6 Score=26.52 Aligned_cols=44 Identities=27% Similarity=0.692 Sum_probs=28.5
Q ss_pred ccccccccccCCCceEEecCCCcccHHHHHHHHhc-----CCCCCCCcc
Q 018233 300 TCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTK-----WGTFCPVCK 343 (359)
Q Consensus 300 ~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~-----~~~~CPlCR 343 (359)
.|.||-..-..++.|.=-.|+..||..|+..=... ..-.||.|+
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 48899995444444443458899999998653321 133588885
No 161
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=48.69 E-value=14 Score=29.38 Aligned_cols=9 Identities=22% Similarity=0.353 Sum_probs=3.8
Q ss_pred hHHHHHHHH
Q 018233 69 MREKFLMKF 77 (359)
Q Consensus 69 m~~~~~~~~ 77 (359)
|.|+.++++
T Consensus 1 MaSK~~llL 9 (95)
T PF07172_consen 1 MASKAFLLL 9 (95)
T ss_pred CchhHHHHH
Confidence 444444433
No 162
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=48.22 E-value=3.7 Score=39.37 Aligned_cols=39 Identities=28% Similarity=0.605 Sum_probs=32.6
Q ss_pred CcccccccccccCCCceEEecCCCcccHHHHHHHHhcCC
Q 018233 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWG 336 (359)
Q Consensus 298 ~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~ 336 (359)
..+|.+|+++|+.+.....+.|.-+||..|+-.|+.+..
T Consensus 214 ~rvC~~CF~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (288)
T KOG1729|consen 214 IRVCDICFEELEKGARGDREDSLPVFHGKCYPNWLTTGA 252 (288)
T ss_pred ceecHHHHHHHhcccccchhhcccccccccccccccccc
Confidence 349999999999866666777766999999999998854
No 163
>PF15435 UNC119_bdg: UNC119-binding protein C5orf30 homologue
Probab=47.97 E-value=9.3 Score=33.07 Aligned_cols=31 Identities=32% Similarity=0.495 Sum_probs=24.1
Q ss_pred ccCCCccccCCCchhhhhhhccchhhHHHHH
Q 018233 44 LDAPFCSSEICSNSQRAEGAKQESKMREKFL 74 (359)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~ 74 (359)
.+-|-|||.||||-||--.--|-=-|-+-.|
T Consensus 27 aekPRCsSTPCSPir~tVsGYQILHMdsNyL 57 (197)
T PF15435_consen 27 AEKPRCSSTPCSPIRRTVSGYQILHMDSNYL 57 (197)
T ss_pred cCCCCcCCCCCchhhccccceEEEeecccee
Confidence 4579999999999999877777666666544
No 164
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=47.43 E-value=28 Score=26.04 Aligned_cols=60 Identities=17% Similarity=0.221 Sum_probs=35.1
Q ss_pred CcceEEEEEcCCCChHHHHHHHHH-cCCcEEEEecccCccccccccCCCCcceeeEEeechh
Q 018233 146 DHINFVLIVRGQCIFEDKIRNAQA-AGYRAAIVYNDREKGSLVSMTASHEGVKVHAIFVSLE 206 (359)
Q Consensus 146 ~~~~ivLV~RG~CsF~~K~~~Aq~-aGA~avIi~n~~~~~~~~~m~~~~~~i~Ip~v~i~~~ 206 (359)
....|.|..+-+|.+-.+++...+ .|.....+ |-..+.....+..-....++|++++...
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~i-di~~~~~~~~~~~~~g~~~vP~i~i~g~ 66 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEKGYDFEEI-PLGNDARGRSLRAVTGATTVPQVFIGGK 66 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHcCCCcEEE-ECCCChHHHHHHHHHCCCCcCeEEECCE
Confidence 356899999999999999998775 56554443 3211111111111111247888887643
No 165
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=47.17 E-value=16 Score=29.01 Aligned_cols=33 Identities=21% Similarity=0.428 Sum_probs=28.7
Q ss_pred CcccccccccccCCCceEEecCCCcccHHHHHHH
Q 018233 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSW 331 (359)
Q Consensus 298 ~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~W 331 (359)
.-.|.||-+++..|++...++ .-..|.+|+..=
T Consensus 6 ewkC~VCg~~iieGqkFTF~~-kGsVH~eCl~~s 38 (103)
T COG4847 6 EWKCYVCGGTIIEGQKFTFTK-KGSVHYECLAES 38 (103)
T ss_pred eeeEeeeCCEeeeccEEEEee-CCcchHHHHHHH
Confidence 358999999999999988888 778899998763
No 166
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=47.13 E-value=15 Score=39.57 Aligned_cols=45 Identities=27% Similarity=0.509 Sum_probs=30.7
Q ss_pred ccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCC--ccccC
Q 018233 300 TCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPV--CKHDM 346 (359)
Q Consensus 300 ~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPl--CR~~i 346 (359)
.|.+|-..+..- .+-.--|+|.=|.+|+..|+..+.. ||. |-+.-
T Consensus 781 ~CtVC~~vi~G~-~~~c~~C~H~gH~sh~~sw~~~~s~-ca~~~C~~~c 827 (839)
T KOG0269|consen 781 KCTVCDLVIRGV-DVWCQVCGHGGHDSHLKSWFFKASP-CAKSICPHLC 827 (839)
T ss_pred Cceeecceeeee-EeecccccccccHHHHHHHHhcCCC-CccccCCccc
Confidence 677776553321 1111229999999999999999875 877 65443
No 167
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=42.53 E-value=12 Score=32.91 Aligned_cols=23 Identities=17% Similarity=0.120 Sum_probs=10.7
Q ss_pred hhHHHHHHHhhhhccCCCCCCCC
Q 018233 241 FSLIVVFALFAVAFITPRPWRPW 263 (359)
Q Consensus 241 iillvIiavlli~~~~~r~r~~~ 263 (359)
++++.+.++++++|+++.+|.++
T Consensus 99 ~Vl~g~s~l~i~yfvir~~R~r~ 121 (163)
T PF06679_consen 99 YVLVGLSALAILYFVIRTFRLRR 121 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Confidence 34444444445555554444443
No 168
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=42.17 E-value=12 Score=37.40 Aligned_cols=44 Identities=27% Similarity=0.557 Sum_probs=31.5
Q ss_pred CcccccccccccCCCceEEe--cCCCcccHHHHHHHHhcCCCCCCCc
Q 018233 298 GETCAICLEDYQDGEKLKVL--SCKHEFHASCVDSWLTKWGTFCPVC 342 (359)
Q Consensus 298 ~~~C~ICLe~f~~~~~vr~L--pC~H~FH~~CI~~Wl~~~~~~CPlC 342 (359)
-..|++|.-.++..+-...+ .|||.|+..|..+|...+.. |..|
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~~~-~~~~ 351 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHNGE-CYEC 351 (384)
T ss_pred cCcCcccceeeeecCCcceEEeeccccchhhcCcchhhCCcc-ccCc
Confidence 45888888776655433333 38999999999999887663 6544
No 169
>PLN02189 cellulose synthase
Probab=41.51 E-value=32 Score=38.58 Aligned_cols=51 Identities=24% Similarity=0.561 Sum_probs=34.1
Q ss_pred CCccccccccccc---CCCceEEe-cCCCcccHHHHHHHHhcCCCCCCCccccCC
Q 018233 297 GGETCAICLEDYQ---DGEKLKVL-SCKHEFHASCVDSWLTKWGTFCPVCKHDMR 347 (359)
Q Consensus 297 ~~~~C~ICLe~f~---~~~~vr~L-pC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~ 347 (359)
..+.|.||-++.. .|+.-+.- -|+--.|+.|.+-=.+..+..||-||+...
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 4569999999964 33422221 267779999995433333446999998875
No 170
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=40.98 E-value=21 Score=34.54 Aligned_cols=48 Identities=21% Similarity=0.337 Sum_probs=36.7
Q ss_pred CCCCcccccccccccCCCceEEecCCCcccHHHHHHHHhcC--CCCCCCc
Q 018233 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKW--GTFCPVC 342 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~--~~~CPlC 342 (359)
..+-..|++--+.-.+.+.-..|.|||+.-++-++.--+.. +..||.|
T Consensus 333 fHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYC 382 (396)
T COG5109 333 FHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYC 382 (396)
T ss_pred ccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCC
Confidence 44567899887776666777889999999999998855442 2359999
No 171
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=40.61 E-value=14 Score=23.86 Aligned_cols=25 Identities=28% Similarity=0.740 Sum_probs=15.1
Q ss_pred ccccccccccCCCc--------eEEecCCCccc
Q 018233 300 TCAICLEDYQDGEK--------LKVLSCKHEFH 324 (359)
Q Consensus 300 ~C~ICLe~f~~~~~--------vr~LpC~H~FH 324 (359)
+|+=|...|+..|. ++--.|+|.|+
T Consensus 4 ~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred ECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 67778877776653 22223677664
No 172
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=40.01 E-value=18 Score=26.76 Aligned_cols=13 Identities=23% Similarity=0.879 Sum_probs=9.5
Q ss_pred cccHHHHHHHHhc
Q 018233 322 EFHASCVDSWLTK 334 (359)
Q Consensus 322 ~FH~~CI~~Wl~~ 334 (359)
-||+.||..|+..
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999865
No 173
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=39.63 E-value=14 Score=22.14 Aligned_cols=9 Identities=33% Similarity=0.752 Sum_probs=4.3
Q ss_pred ccccccccc
Q 018233 300 TCAICLEDY 308 (359)
Q Consensus 300 ~C~ICLe~f 308 (359)
.|+-|-.++
T Consensus 2 ~CP~C~~~V 10 (26)
T PF10571_consen 2 TCPECGAEV 10 (26)
T ss_pred cCCCCcCCc
Confidence 355555443
No 174
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=38.77 E-value=34 Score=28.13 Aligned_cols=45 Identities=20% Similarity=0.407 Sum_probs=29.0
Q ss_pred CcccccccccccCCC-----------ceEEecCCCcccHHHHHHHHhcCCCCCCCcc
Q 018233 298 GETCAICLEDYQDGE-----------KLKVLSCKHEFHASCVDSWLTKWGTFCPVCK 343 (359)
Q Consensus 298 ~~~C~ICLe~f~~~~-----------~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR 343 (359)
...|--|+..|.... ..+--.|++.|+.+|=.-+-+.-. .||-|.
T Consensus 55 ~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh-~CPGC~ 110 (112)
T TIGR00622 55 SRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLH-CCPGCI 110 (112)
T ss_pred CCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhcc-CCcCCC
Confidence 457999999886531 122334899999999433333323 399995
No 175
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=38.25 E-value=37 Score=26.01 Aligned_cols=54 Identities=24% Similarity=0.518 Sum_probs=20.8
Q ss_pred CCcccccccccccCCC--ceEEe--cCCCcccHHHHHHHHhcCCCCCCCccccCCCCC
Q 018233 297 GGETCAICLEDYQDGE--KLKVL--SCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNS 350 (359)
Q Consensus 297 ~~~~C~ICLe~f~~~~--~vr~L--pC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~ 350 (359)
....|-||=++.-... .+.+. -|+--.++.|.+-=.+..+..||-|+++.....
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~k 65 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRHK 65 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B----T
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccccc
Confidence 4679999999863321 23222 367778899987544444446999998875443
No 176
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=38.01 E-value=14 Score=29.72 Aligned_cols=17 Identities=12% Similarity=0.645 Sum_probs=7.4
Q ss_pred ceeeeehhHHHHHHHhh
Q 018233 235 VLMVSVFSLIVVFALFA 251 (359)
Q Consensus 235 ~m~IsfiillvIiavll 251 (359)
.++++++++++++.++.
T Consensus 63 iili~lls~v~IlVily 79 (101)
T PF06024_consen 63 IILISLLSFVCILVILY 79 (101)
T ss_pred chHHHHHHHHHHHHHHh
Confidence 34444444444444443
No 177
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=37.55 E-value=77 Score=24.36 Aligned_cols=69 Identities=17% Similarity=0.228 Sum_probs=37.6
Q ss_pred ceEEEEEcC-----CCChHHHHHHHHH-cCCcEEEEecccCccccc-cccCCCCcceeeEEeechh---hHHHHHHhhcc
Q 018233 148 INFVLIVRG-----QCIFEDKIRNAQA-AGYRAAIVYNDREKGSLV-SMTASHEGVKVHAIFVSLE---TGVYLKEHARG 217 (359)
Q Consensus 148 ~~ivLV~RG-----~CsF~~K~~~Aq~-aGA~avIi~n~~~~~~~~-~m~~~~~~i~Ip~v~i~~~---~G~~L~~~~~~ 217 (359)
.+|++...| .|.|-.|++..-+ .|...-. +|-..+.... .+......-++|.++|... ..+.|+++.+.
T Consensus 8 ~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~-idv~~~~~~~~~l~~~~g~~tvP~vfi~g~~iGG~~~l~~l~~~ 86 (90)
T cd03028 8 NPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGT-FDILEDEEVRQGLKEYSNWPTFPQLYVNGELVGGCDIVKEMHES 86 (90)
T ss_pred CCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEE-EEcCCCHHHHHHHHHHhCCCCCCEEEECCEEEeCHHHHHHHHHc
Confidence 467777765 8999999988764 5655333 3422221111 1111112247899988765 23445554443
No 178
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=37.47 E-value=16 Score=22.93 Aligned_cols=8 Identities=50% Similarity=1.310 Sum_probs=6.1
Q ss_pred CCCCcccc
Q 018233 338 FCPVCKHD 345 (359)
Q Consensus 338 ~CPlCR~~ 345 (359)
.||+|..+
T Consensus 19 ~CP~Cg~~ 26 (33)
T cd00350 19 VCPVCGAP 26 (33)
T ss_pred cCcCCCCc
Confidence 59999753
No 179
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=36.83 E-value=12 Score=26.27 Aligned_cols=12 Identities=25% Similarity=0.963 Sum_probs=6.2
Q ss_pred CCCCccccCCCC
Q 018233 338 FCPVCKHDMRNN 349 (359)
Q Consensus 338 ~CPlCR~~i~~~ 349 (359)
.||+|.+++...
T Consensus 22 ~CPlC~r~l~~e 33 (54)
T PF04423_consen 22 CCPLCGRPLDEE 33 (54)
T ss_dssp E-TTT--EE-HH
T ss_pred cCCCCCCCCCHH
Confidence 599999988654
No 180
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=36.30 E-value=21 Score=34.00 Aligned_cols=48 Identities=23% Similarity=0.586 Sum_probs=35.1
Q ss_pred CcccccccccccCCCceEEecC----CCcccHHHHHHHHhcCC----------CCCCCccccCCC
Q 018233 298 GETCAICLEDYQDGEKLKVLSC----KHEFHASCVDSWLTKWG----------TFCPVCKHDMRN 348 (359)
Q Consensus 298 ~~~C~ICLe~f~~~~~vr~LpC----~H~FH~~CI~~Wl~~~~----------~~CPlCR~~i~~ 348 (359)
.-.|.+|.|.+|+.. ...| .|.||..|-++-++.+. ..||+--..++=
T Consensus 268 pLcCTLC~ERLEDTH---FVQCPSVp~HKFCFPCSResIK~Qg~sgevYCPSGdkCPLvgS~vPW 329 (352)
T KOG3579|consen 268 PLCCTLCHERLEDTH---FVQCPSVPSHKFCFPCSRESIKQQGASGEVYCPSGDKCPLVGSNVPW 329 (352)
T ss_pred ceeehhhhhhhccCc---eeecCCCcccceecccCHHHHHhhcCCCceeCCCCCcCcccCCcccH
Confidence 459999999988763 3346 79999999999887742 247776665543
No 181
>PF15102 TMEM154: TMEM154 protein family
Probab=35.88 E-value=29 Score=29.88 Aligned_cols=8 Identities=25% Similarity=0.883 Sum_probs=5.8
Q ss_pred HHHHHHhc
Q 018233 327 CVDSWLTK 334 (359)
Q Consensus 327 CI~~Wl~~ 334 (359)
=||+|+.+
T Consensus 129 eldkwm~s 136 (146)
T PF15102_consen 129 ELDKWMNS 136 (146)
T ss_pred HHHhHHHh
Confidence 47888766
No 182
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=35.65 E-value=12 Score=37.22 Aligned_cols=52 Identities=21% Similarity=0.498 Sum_probs=0.0
Q ss_pred CCcccccccccc--------------cCC--CceEEecCCCcccHHHHHHHHhc---CC-----CCCCCccccCCC
Q 018233 297 GGETCAICLEDY--------------QDG--EKLKVLSCKHEFHASCVDSWLTK---WG-----TFCPVCKHDMRN 348 (359)
Q Consensus 297 ~~~~C~ICLe~f--------------~~~--~~vr~LpC~H~FH~~CI~~Wl~~---~~-----~~CPlCR~~i~~ 348 (359)
...+|++|+..- .+. -....-||||+--.+...-|-+. |. ..||.|-.+|..
T Consensus 327 ~~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 327 RSRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred ccccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 367999999761 111 12346689999888888888655 21 259999887763
No 183
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=35.13 E-value=26 Score=21.33 Aligned_cols=29 Identities=21% Similarity=0.602 Sum_probs=10.9
Q ss_pred ccccccccccCCCceEEecCCCcccHHHH
Q 018233 300 TCAICLEDYQDGEKLKVLSCKHEFHASCV 328 (359)
Q Consensus 300 ~C~ICLe~f~~~~~vr~LpC~H~FH~~CI 328 (359)
.|.+|-++...+...+-..|.-.+|.+|+
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhcC
Confidence 57888888666444555668889999985
No 184
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=33.66 E-value=30 Score=24.29 Aligned_cols=42 Identities=29% Similarity=0.745 Sum_probs=18.5
Q ss_pred cccccccccCCCc-------eEEecCCCcccHHHHHHHHhcCCCCCCCcc
Q 018233 301 CAICLEDYQDGEK-------LKVLSCKHEFHASCVDSWLTKWGTFCPVCK 343 (359)
Q Consensus 301 C~ICLe~f~~~~~-------vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR 343 (359)
|--|+..|..+.. .+--.|++.|+.+| |-.+-..-..||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dC-D~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDC-DVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHH-HHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCc-ChhhhccccCCcCCC
Confidence 5567777666521 12223899999999 222211122499884
No 185
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=31.94 E-value=15 Score=29.43 Aligned_cols=28 Identities=11% Similarity=0.163 Sum_probs=16.3
Q ss_pred cceeeeehhHHHHHHHhhhhccCCCCCC
Q 018233 234 SVLMVSVFSLIVVFALFAVAFITPRPWR 261 (359)
Q Consensus 234 ~~m~IsfiillvIiavlli~~~~~r~r~ 261 (359)
.+.+++|+++++++.++.-|++.|.++.
T Consensus 65 li~lls~v~IlVily~IyYFVILRer~~ 92 (101)
T PF06024_consen 65 LISLLSFVCILVILYAIYYFVILRERQK 92 (101)
T ss_pred HHHHHHHHHHHHHHhhheEEEEEecccc
Confidence 4455666666666666665555544433
No 186
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=31.90 E-value=19 Score=26.49 Aligned_cols=21 Identities=24% Similarity=0.450 Sum_probs=0.5
Q ss_pred HHHHHhhhhccCCCCCCCCCC
Q 018233 245 VVFALFAVAFITPRPWRPWPG 265 (359)
Q Consensus 245 vIiavlli~~~~~r~r~~~~~ 265 (359)
++++++++.+++.|.+++..+
T Consensus 22 ll~ailLIlf~iyR~rkkdEG 42 (64)
T PF01034_consen 22 LLFAILLILFLIYRMRKKDEG 42 (64)
T ss_dssp ---------------S-----
T ss_pred HHHHHHHHHHHHHHHHhcCCC
Confidence 334445555555565544433
No 187
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=30.74 E-value=31 Score=24.18 Aligned_cols=22 Identities=45% Similarity=0.904 Sum_probs=12.4
Q ss_pred CCCcccHHHHHHHHhcCCCCCCCc
Q 018233 319 CKHEFHASCVDSWLTKWGTFCPVC 342 (359)
Q Consensus 319 C~H~FH~~CI~~Wl~~~~~~CPlC 342 (359)
|||.|...=-+.- .....||.|
T Consensus 34 Cgh~w~~~v~~R~--~~~~~CP~C 55 (55)
T PF14311_consen 34 CGHEWKASVNDRT--RRGKGCPYC 55 (55)
T ss_pred CCCeeEccHhhhc--cCCCCCCCC
Confidence 6777665433332 234459988
No 188
>PF05715 zf-piccolo: Piccolo Zn-finger; InterPro: IPR008899 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This (predicted) zinc finger is found in the bassoon and piccolo proteins, both of which are components of the presynaptic cytoskeletal matrix (PCM) assembled at the active zone of neurotransmitter release, where Piccolo plays a role in the trafficking of synaptic vesicles (SVs) [, , ]. The Piccolo zinc fingers were found to interact with the dual prenylated rab3A and VAMP2/Synaptobrevin II receptor PRA1. There are eight conserved cysteines in Piccolo-type zinc fingers, suggesting that they coordinates two zinc ligands. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding, 0045202 synapse
Probab=30.18 E-value=33 Score=24.84 Aligned_cols=15 Identities=33% Similarity=0.966 Sum_probs=10.3
Q ss_pred CCCCCccccCCCCCC
Q 018233 337 TFCPVCKHDMRNNSE 351 (359)
Q Consensus 337 ~~CPlCR~~i~~~~~ 351 (359)
..||+|+..+...+.
T Consensus 3 ~~CPlCkt~~n~gsk 17 (61)
T PF05715_consen 3 SLCPLCKTTLNVGSK 17 (61)
T ss_pred ccCCcccchhhcCCC
Confidence 359999988755443
No 189
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=29.73 E-value=14 Score=35.23 Aligned_cols=44 Identities=23% Similarity=0.608 Sum_probs=32.3
Q ss_pred CcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCCCC
Q 018233 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNSE 351 (359)
Q Consensus 298 ~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~~ 351 (359)
...|+-|-+-+-+.+.||.. =.|+||-+|+ .|-+|++.+...++
T Consensus 92 GTKCsaC~~GIpPtqVVRkA-qd~VYHl~CF---------~C~iC~R~L~TGdE 135 (383)
T KOG4577|consen 92 GTKCSACQEGIPPTQVVRKA-QDFVYHLHCF---------ACFICKRQLATGDE 135 (383)
T ss_pred CCcchhhcCCCChHHHHHHh-hcceeehhhh---------hhHhhhcccccCCe
Confidence 45899999887776655543 5899999997 37888777765543
No 190
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.67 E-value=9.8 Score=36.27 Aligned_cols=48 Identities=31% Similarity=0.650 Sum_probs=38.2
Q ss_pred CcccccccccccCCC---ceEEec--------CCCcccHHHHHHHHhcCCCCCCCcccc
Q 018233 298 GETCAICLEDYQDGE---KLKVLS--------CKHEFHASCVDSWLTKWGTFCPVCKHD 345 (359)
Q Consensus 298 ~~~C~ICLe~f~~~~---~vr~Lp--------C~H~FH~~CI~~Wl~~~~~~CPlCR~~ 345 (359)
...|.||...|...+ .-+++. |+|..+..|++.=+......||.|+..
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 468999999998442 235666 999999999999877765569999864
No 191
>PLN02195 cellulose synthase A
Probab=29.28 E-value=63 Score=36.15 Aligned_cols=58 Identities=17% Similarity=0.385 Sum_probs=37.2
Q ss_pred CCcccccccccccCC---Cc-eEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCCCCCcc
Q 018233 297 GGETCAICLEDYQDG---EK-LKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNSESNE 354 (359)
Q Consensus 297 ~~~~C~ICLe~f~~~---~~-vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~~~~~ 354 (359)
....|.||=++.... +. |..-.|+--.|+.|.+-=-+..+..||-|++...++++.+|
T Consensus 5 ~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk~~~~~~d 66 (977)
T PLN02195 5 GAPICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYDAENVFDD 66 (977)
T ss_pred CCccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccccccccch
Confidence 456899999986433 32 23334777799999843222233459999998875444444
No 192
>PLN02436 cellulose synthase A
Probab=29.05 E-value=64 Score=36.47 Aligned_cols=51 Identities=27% Similarity=0.600 Sum_probs=33.7
Q ss_pred CCcccccccccc---cCCCceE-EecCCCcccHHHHHHHHhcCCCCCCCccccCC
Q 018233 297 GGETCAICLEDY---QDGEKLK-VLSCKHEFHASCVDSWLTKWGTFCPVCKHDMR 347 (359)
Q Consensus 297 ~~~~C~ICLe~f---~~~~~vr-~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~ 347 (359)
....|-||=++. .+||.-+ .--|+--.|+.|.+-=.+..+..||-|++...
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 456999999996 3444221 11266669999995433333446999998875
No 193
>KOG3858 consensus Ephrin, ligand for Eph receptor tyrosine kinase [Signal transduction mechanisms]
Probab=28.55 E-value=30 Score=32.16 Aligned_cols=9 Identities=89% Similarity=1.505 Sum_probs=6.8
Q ss_pred eEEEecCcc
Q 018233 4 YYYISTSRG 12 (359)
Q Consensus 4 ~~~~~~~~~ 12 (359)
|||||||-|
T Consensus 127 YY~IStStg 135 (233)
T KOG3858|consen 127 YYYISTSTG 135 (233)
T ss_pred EEEEeCCCc
Confidence 788888765
No 194
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=28.50 E-value=9.1 Score=36.97 Aligned_cols=27 Identities=11% Similarity=0.487 Sum_probs=17.5
Q ss_pred eeeeehhHHHHHHHhhhhccCCCCCCC
Q 018233 236 LMVSVFSLIVVFALFAVAFITPRPWRP 262 (359)
Q Consensus 236 m~IsfiillvIiavlli~~~~~r~r~~ 262 (359)
+..+++.+++|+.+++++|++.|+||.
T Consensus 258 I~aSiiaIliIVLIMvIIYLILRYRRK 284 (299)
T PF02009_consen 258 IIASIIAILIIVLIMVIIYLILRYRRK 284 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666777777777666553
No 195
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=28.33 E-value=15 Score=36.22 Aligned_cols=28 Identities=11% Similarity=0.449 Sum_probs=19.8
Q ss_pred ceeeeehhHHHHHHHhhhhccCCCCCCC
Q 018233 235 VLMVSVFSLIVVFALFAVAFITPRPWRP 262 (359)
Q Consensus 235 ~m~IsfiillvIiavlli~~~~~r~r~~ 262 (359)
-++.+++.+++++.+++++|++.|+||.
T Consensus 311 ~IiaSiIAIvvIVLIMvIIYLILRYRRK 338 (353)
T TIGR01477 311 PIIASIIAILIIVLIMVIIYLILRYRRK 338 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3456677777777777788887777654
No 196
>PTZ00046 rifin; Provisional
Probab=27.13 E-value=16 Score=36.05 Aligned_cols=28 Identities=14% Similarity=0.468 Sum_probs=19.8
Q ss_pred ceeeeehhHHHHHHHhhhhccCCCCCCC
Q 018233 235 VLMVSVFSLIVVFALFAVAFITPRPWRP 262 (359)
Q Consensus 235 ~m~IsfiillvIiavlli~~~~~r~r~~ 262 (359)
-++.+++.+++++.+++++|++.|+||.
T Consensus 316 aIiaSiiAIvVIVLIMvIIYLILRYRRK 343 (358)
T PTZ00046 316 AIIASIVAIVVIVLIMVIIYLILRYRRK 343 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3456677777777777788887777654
No 197
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=26.61 E-value=87 Score=35.36 Aligned_cols=52 Identities=17% Similarity=0.479 Sum_probs=34.3
Q ss_pred CCCcccccccccccC---CCc-eEEecCCCcccHHHHHHHHhcCCCCCCCccccCC
Q 018233 296 HGGETCAICLEDYQD---GEK-LKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMR 347 (359)
Q Consensus 296 ~~~~~C~ICLe~f~~---~~~-vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~ 347 (359)
-+...|-||=++... ||. |..--|+--.|+.|.+-=.+..+..||-|++...
T Consensus 13 ~~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 13 ADAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred CCcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 356799999999643 332 2222366669999995433333446999998876
No 198
>PRK10824 glutaredoxin-4; Provisional
Probab=26.28 E-value=74 Score=26.18 Aligned_cols=71 Identities=17% Similarity=0.163 Sum_probs=39.3
Q ss_pred cceEEEEEcC-----CCChHHHHHHHH-HcCCcEEEEecccCcccc-ccccCCCCcceeeEEeechhh---HHHHHHhhc
Q 018233 147 HINFVLIVRG-----QCIFEDKIRNAQ-AAGYRAAIVYNDREKGSL-VSMTASHEGVKVHAIFVSLET---GVYLKEHAR 216 (359)
Q Consensus 147 ~~~ivLV~RG-----~CsF~~K~~~Aq-~aGA~avIi~n~~~~~~~-~~m~~~~~~i~Ip~v~i~~~~---G~~L~~~~~ 216 (359)
.++|++...| .|.|-.+++..- +.|...-. +|-.++... ..+..-...-++|-|||...- .+.|.++.+
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~-idi~~d~~~~~~l~~~sg~~TVPQIFI~G~~IGG~ddl~~l~~ 92 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAY-VDILQNPDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEMYQ 92 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceE-EEecCCHHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHHHHH
Confidence 3578888887 899999998876 46755332 222111111 111111123488999887653 244444444
Q ss_pred cC
Q 018233 217 GE 218 (359)
Q Consensus 217 ~~ 218 (359)
++
T Consensus 93 ~G 94 (115)
T PRK10824 93 RG 94 (115)
T ss_pred CC
Confidence 43
No 199
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=26.04 E-value=1.1e+02 Score=22.13 Aligned_cols=54 Identities=19% Similarity=0.043 Sum_probs=32.6
Q ss_pred ceEEEEEcCCCChHHHHHHHH-HcCCcEEEEecccCccc----cccccCCCCcceeeEEeech
Q 018233 148 INFVLIVRGQCIFEDKIRNAQ-AAGYRAAIVYNDREKGS----LVSMTASHEGVKVHAIFVSL 205 (359)
Q Consensus 148 ~~ivLV~RG~CsF~~K~~~Aq-~aGA~avIi~n~~~~~~----~~~m~~~~~~i~Ip~v~i~~ 205 (359)
++|.|.-..+|++-.|++.+. +.|.....+ |-..+.. +..+.+ ..++|.+++..
T Consensus 1 ~~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~-di~~~~~~~~el~~~~g---~~~vP~v~i~~ 59 (73)
T cd03027 1 GRVTIYSRLGCEDCTAVRLFLREKGLPYVEI-NIDIFPERKAELEERTG---SSVVPQIFFNE 59 (73)
T ss_pred CEEEEEecCCChhHHHHHHHHHHCCCceEEE-ECCCCHHHHHHHHHHhC---CCCcCEEEECC
Confidence 367888889999999999965 567664443 4322211 111111 23678887764
No 200
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=25.49 E-value=24 Score=25.72 Aligned_cols=35 Identities=17% Similarity=0.374 Sum_probs=17.2
Q ss_pred CCcccccccccccCCCceEE-ecCCCcccHHHHHHH
Q 018233 297 GGETCAICLEDYQDGEKLKV-LSCKHEFHASCVDSW 331 (359)
Q Consensus 297 ~~~~C~ICLe~f~~~~~vr~-LpC~H~FH~~CI~~W 331 (359)
+...|.+|...|..-..-.. --||++|+.+|....
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~ 43 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQR 43 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EE
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCE
Confidence 46799999999965431111 138999999997643
No 201
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.36 E-value=29 Score=33.44 Aligned_cols=56 Identities=20% Similarity=0.439 Sum_probs=42.1
Q ss_pred CCCCcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCCCCCc
Q 018233 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNSESN 353 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~~~~ 353 (359)
....+.|-||...+...+. .--|.|.|...|...|....+. ||-|+.-+..-.-+.
T Consensus 102 ~~~~~~~~~~~g~l~vpt~--~qg~w~qf~~~~p~~~~~~~~~-~~d~~~~~~pv~aG~ 157 (324)
T KOG0824|consen 102 QQDHDICYICYGKLTVPTR--IQGCWHQFCYVCPKSNFAMGND-CPDCRGKISPVLAGM 157 (324)
T ss_pred cCCccceeeeeeeEEeccc--ccCceeeeeecCCchhhhhhhc-cchhhcCcCceeccC
Confidence 4567799999988766542 2239999999999999999775 999987665544433
No 202
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=25.31 E-value=1.6e+02 Score=22.17 Aligned_cols=57 Identities=14% Similarity=0.188 Sum_probs=35.3
Q ss_pred eEEEEEcCCCChHHHHHHHH-HcCCcEEEEecccCcc-ccccccCCC-CcceeeEEeech
Q 018233 149 NFVLIVRGQCIFEDKIRNAQ-AAGYRAAIVYNDREKG-SLVSMTASH-EGVKVHAIFVSL 205 (359)
Q Consensus 149 ~ivLV~RG~CsF~~K~~~Aq-~aGA~avIi~n~~~~~-~~~~m~~~~-~~i~Ip~v~i~~ 205 (359)
.|.+..+-+|.|=.|++++. +.|.....|..+.... ..-.|.... ...++|+++|..
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~ 61 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGG 61 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECC
Confidence 35566677799999999977 4787766655443221 221222211 235889999986
No 203
>PRK10638 glutaredoxin 3; Provisional
Probab=24.83 E-value=1e+02 Score=23.00 Aligned_cols=56 Identities=14% Similarity=0.211 Sum_probs=33.4
Q ss_pred eEEEEEcCCCChHHHHHHHH-HcCCcEEEEecccCcccc-ccccCCCCcceeeEEeech
Q 018233 149 NFVLIVRGQCIFEDKIRNAQ-AAGYRAAIVYNDREKGSL-VSMTASHEGVKVHAIFVSL 205 (359)
Q Consensus 149 ~ivLV~RG~CsF~~K~~~Aq-~aGA~avIi~n~~~~~~~-~~m~~~~~~i~Ip~v~i~~ 205 (359)
+|.|..+-.|.|-.|++.+- +.|....++ |-..+... ..+.......++|++++..
T Consensus 3 ~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~-dv~~~~~~~~~l~~~~g~~~vP~i~~~g 60 (83)
T PRK10638 3 NVEIYTKATCPFCHRAKALLNSKGVSFQEI-PIDGDAAKREEMIKRSGRTTVPQIFIDA 60 (83)
T ss_pred cEEEEECCCChhHHHHHHHHHHcCCCcEEE-ECCCCHHHHHHHHHHhCCCCcCEEEECC
Confidence 57788889999999999876 467766554 32211111 1111111124788887764
No 204
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=23.79 E-value=1.6e+02 Score=21.94 Aligned_cols=57 Identities=14% Similarity=0.097 Sum_probs=34.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHc-----CCcEEEEecccCc----cccccccCCCCcceeeEEeechh
Q 018233 149 NFVLIVRGQCIFEDKIRNAQAA-----GYRAAIVYNDREK----GSLVSMTASHEGVKVHAIFVSLE 206 (359)
Q Consensus 149 ~ivLV~RG~CsF~~K~~~Aq~a-----GA~avIi~n~~~~----~~~~~m~~~~~~i~Ip~v~i~~~ 206 (359)
+|.+.-+.+|.+=.|++..-+. ........|-..+ ..+..+.+. ...++|.++|...
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~-~~~~vP~ifi~g~ 67 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGK-PVETVPQIFVDQK 67 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCC-CCCcCCEEEECCE
Confidence 5788889999999999998876 3334444443221 122222221 1147888887643
No 205
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=23.66 E-value=53 Score=22.73 Aligned_cols=35 Identities=14% Similarity=0.429 Sum_probs=23.8
Q ss_pred CcccccccccccCCCc-eEEecCCCcccHHHHHHHH
Q 018233 298 GETCAICLEDYQDGEK-LKVLSCKHEFHASCVDSWL 332 (359)
Q Consensus 298 ~~~C~ICLe~f~~~~~-vr~LpC~H~FH~~CI~~Wl 332 (359)
...|.+|-..|..-.. ..--.||++|+.+|...-.
T Consensus 2 ~~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~ 37 (57)
T cd00065 2 ASSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRI 37 (57)
T ss_pred cCcCcccCccccCCccccccCcCcCCcChHHcCCee
Confidence 3579999888776431 1222489999999976543
No 206
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=23.48 E-value=30 Score=33.53 Aligned_cols=43 Identities=23% Similarity=0.668 Sum_probs=26.5
Q ss_pred CCccccccccccc-----------CCCceEEecCCCc--ccHHHHHHHHhc-----CCCCCCCccc
Q 018233 297 GGETCAICLEDYQ-----------DGEKLKVLSCKHE--FHASCVDSWLTK-----WGTFCPVCKH 344 (359)
Q Consensus 297 ~~~~C~ICLe~f~-----------~~~~vr~LpC~H~--FH~~CI~~Wl~~-----~~~~CPlCR~ 344 (359)
....|++=|+.+. ..+.-..|.|||+ +| .|=.+ +...||+||.
T Consensus 289 ~RPQCPVglnTL~~P~~~~~~~~~~~QP~vYl~CGHV~G~H-----~WG~~e~~g~~~r~CPmC~~ 349 (429)
T KOG3842|consen 289 ARPQCPVGLNTLAFPSKRRKRVVDEKQPWVYLNCGHVHGYH-----NWGVRENTGQRERECPMCRV 349 (429)
T ss_pred cCCCCCcccceeecccccccccccccCCeEEEecccccccc-----ccccccccCcccCcCCeeee
Confidence 3457777776643 2334567889985 66 45433 1235999985
No 207
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=22.94 E-value=44 Score=31.48 Aligned_cols=43 Identities=19% Similarity=0.233 Sum_probs=32.4
Q ss_pred CcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCC-CCCCc
Q 018233 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGT-FCPVC 342 (359)
Q Consensus 298 ~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~-~CPlC 342 (359)
...|+|-+..+... ++-.-|||+|-++=|.+.+....+ .||+=
T Consensus 176 s~rdPis~~~I~nP--viSkkC~HvydrDsI~~~l~~~~~i~CPv~ 219 (262)
T KOG2979|consen 176 SNRDPISKKPIVNP--VISKKCGHVYDRDSIMQILCDEITIRCPVL 219 (262)
T ss_pred cccCchhhhhhhch--hhhcCcCcchhhhhHHHHhccCceeecccc
Confidence 34888887777665 455569999999999998877432 38874
No 208
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=22.51 E-value=1.1e+02 Score=22.14 Aligned_cols=53 Identities=13% Similarity=0.144 Sum_probs=28.6
Q ss_pred EEEEcCCCChHHHHHHHHH-cCCcEEEEecccCccccccccCCCCcceeeEEeec
Q 018233 151 VLIVRGQCIFEDKIRNAQA-AGYRAAIVYNDREKGSLVSMTASHEGVKVHAIFVS 204 (359)
Q Consensus 151 vLV~RG~CsF~~K~~~Aq~-aGA~avIi~n~~~~~~~~~m~~~~~~i~Ip~v~i~ 204 (359)
.|..+-+|.+-.|++.+.+ .|-..-. .|-..+..............+|++++.
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~~i~~~~-~di~~~~~~~~~~~~~g~~~vP~v~~~ 55 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEHGIAFEE-INIDEQPEAIDYVKAQGFRQVPVIVAD 55 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHCCCceEE-EECCCCHHHHHHHHHcCCcccCEEEEC
Confidence 4566778999999999665 4544333 343222211111111112478888875
No 209
>PRK11827 hypothetical protein; Provisional
Probab=22.36 E-value=35 Score=24.82 Aligned_cols=19 Identities=32% Similarity=0.545 Sum_probs=10.5
Q ss_pred HHHhcCCCCCCCccccCCCC
Q 018233 330 SWLTKWGTFCPVCKHDMRNN 349 (359)
Q Consensus 330 ~Wl~~~~~~CPlCR~~i~~~ 349 (359)
++|..-- .||+|+.++...
T Consensus 3 ~~LLeIL-aCP~ckg~L~~~ 21 (60)
T PRK11827 3 HRLLEII-ACPVCNGKLWYN 21 (60)
T ss_pred hHHHhhe-ECCCCCCcCeEc
Confidence 3444433 377777776543
No 210
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=22.11 E-value=11 Score=26.44 Aligned_cols=14 Identities=21% Similarity=0.641 Sum_probs=9.8
Q ss_pred CcccccccccccCC
Q 018233 298 GETCAICLEDYQDG 311 (359)
Q Consensus 298 ~~~C~ICLe~f~~~ 311 (359)
...|+.|-++|...
T Consensus 2 ~f~CP~C~~~~~~~ 15 (54)
T PF05605_consen 2 SFTCPYCGKGFSES 15 (54)
T ss_pred CcCCCCCCCccCHH
Confidence 35799998865553
No 211
>KOG3165 consensus Predicted nucleic-acid-binding protein, contains PIN domain [General function prediction only]
Probab=21.89 E-value=63 Score=28.39 Aligned_cols=24 Identities=21% Similarity=0.601 Sum_probs=19.8
Q ss_pred ceEEecCCC--cccHHHHHHHHhcCC
Q 018233 313 KLKVLSCKH--EFHASCVDSWLTKWG 336 (359)
Q Consensus 313 ~vr~LpC~H--~FH~~CI~~Wl~~~~ 336 (359)
.+..|||.| .|-.+||-+=..+|+
T Consensus 125 r~eRL~C~HKGTYADDClv~RV~qHk 150 (195)
T KOG3165|consen 125 RFERLPCTHKGTYADDCLVQRVTQHK 150 (195)
T ss_pred cccccccccCCcchhhHHHHHHhhcc
Confidence 466899999 699999988777765
No 212
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=21.61 E-value=1.2e+02 Score=20.88 Aligned_cols=31 Identities=6% Similarity=0.036 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHHcCCcEEEEecc
Q 018233 150 FVLIVRGQCIFEDKIRNAQAAGYRAAIVYND 180 (359)
Q Consensus 150 ivLV~RG~CsF~~K~~~Aq~aGA~avIi~n~ 180 (359)
|.|.-+.+|++-.|++.+.+.-......+|-
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di 32 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLGIEFEEIDI 32 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCcEEEEEC
Confidence 5677788899999999876543334444443
No 213
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=21.60 E-value=82 Score=25.09 Aligned_cols=31 Identities=29% Similarity=0.717 Sum_probs=22.0
Q ss_pred CcccccccccccCCCceEEec--CCCcccHHHHHH
Q 018233 298 GETCAICLEDYQDGEKLKVLS--CKHEFHASCVDS 330 (359)
Q Consensus 298 ~~~C~ICLe~f~~~~~vr~Lp--C~H~FH~~CI~~ 330 (359)
...|.||... .|-.++--. |...||..|...
T Consensus 55 ~~~C~iC~~~--~G~~i~C~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 55 KLKCSICGKS--GGACIKCSHPGCSTAFHPTCARK 87 (110)
T ss_pred CCcCcCCCCC--CceeEEcCCCCCCcCCCHHHHHH
Confidence 5699999998 453333222 777999999855
No 214
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=21.59 E-value=1.7e+02 Score=21.03 Aligned_cols=46 Identities=26% Similarity=0.660 Sum_probs=30.4
Q ss_pred cccccccccccCCCceEEecCC--CcccHHHHHHHHhcCCCCCCCccccCCC
Q 018233 299 ETCAICLEDYQDGEKLKVLSCK--HEFHASCVDSWLTKWGTFCPVCKHDMRN 348 (359)
Q Consensus 299 ~~C~ICLe~f~~~~~vr~LpC~--H~FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (359)
..|-.|-.++..+..-.. -|. ..|+.+|.+.-|. . .||.|.-.+..
T Consensus 6 pnCE~C~~dLp~~s~~A~-ICSfECTFC~~C~e~~l~--~-~CPNCgGelv~ 53 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEAY-ICSFECTFCADCAETMLN--G-VCPNCGGELVR 53 (57)
T ss_pred CCccccCCCCCCCCCcce-EEeEeCcccHHHHHHHhc--C-cCcCCCCcccc
Confidence 356667777666542222 264 4799999998763 3 59999877654
No 215
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=21.47 E-value=79 Score=25.49 Aligned_cols=32 Identities=19% Similarity=0.363 Sum_probs=25.6
Q ss_pred ccccccccccCCCceEEecCCCcccHHHHHHHH
Q 018233 300 TCAICLEDYQDGEKLKVLSCKHEFHASCVDSWL 332 (359)
Q Consensus 300 ~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl 332 (359)
.|.||-+++-.|+....+.= -..|.+|+..=.
T Consensus 4 kC~iCg~~I~~gqlFTF~~k-G~VH~~C~~~~~ 35 (101)
T PF09943_consen 4 KCYICGKPIYEGQLFTFTKK-GPVHYECFREKA 35 (101)
T ss_pred EEEecCCeeeecceEEEecC-CcEeHHHHHHHH
Confidence 69999999999987666644 678999987643
No 216
>PF15353 HECA: Headcase protein family homologue
Probab=21.34 E-value=56 Score=26.55 Aligned_cols=15 Identities=20% Similarity=0.658 Sum_probs=12.8
Q ss_pred CCCcccHHHHHHHHh
Q 018233 319 CKHEFHASCVDSWLT 333 (359)
Q Consensus 319 C~H~FH~~CI~~Wl~ 333 (359)
.++..|.+|++.|-.
T Consensus 40 ~~~~MH~~CF~~wE~ 54 (107)
T PF15353_consen 40 FGQYMHRECFEKWED 54 (107)
T ss_pred CCCchHHHHHHHHHH
Confidence 488999999999943
No 217
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.91 E-value=55 Score=28.47 Aligned_cols=46 Identities=22% Similarity=0.480 Sum_probs=29.5
Q ss_pred ccccccccCCCceEEec-CCCcccHHHHHHHHhcCCCCCCCccccCCCCCC
Q 018233 302 AICLEDYQDGEKLKVLS-CKHEFHASCVDSWLTKWGTFCPVCKHDMRNNSE 351 (359)
Q Consensus 302 ~ICLe~f~~~~~vr~Lp-C~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~~ 351 (359)
.||++-=...+....-| =.+-||.+|=.+-+.. ||.|..+|.-.-.
T Consensus 8 qiC~NGH~~t~~~~~~p~~~~~fC~kCG~~tI~~----Cp~C~~~IrG~y~ 54 (158)
T PF10083_consen 8 QICLNGHVITDSYDKNPELREKFCSKCGAKTITS----CPNCSTPIRGDYH 54 (158)
T ss_pred HHccCccccccccccCchHHHHHHHHhhHHHHHH----CcCCCCCCCCcee
Confidence 46766543333333333 2568999998876554 9999999866543
No 218
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=20.73 E-value=83 Score=30.72 Aligned_cols=52 Identities=23% Similarity=0.472 Sum_probs=33.6
Q ss_pred CCcccccccccccCCCceEEec--CCCcccHHHHHHHHhcCCCCCCCccccCCCCC
Q 018233 297 GGETCAICLEDYQDGEKLKVLS--CKHEFHASCVDSWLTKWGTFCPVCKHDMRNNS 350 (359)
Q Consensus 297 ~~~~C~ICLe~f~~~~~vr~Lp--C~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~ 350 (359)
-...|+||-+.....+ .-.|| |+|.-|..|+..=...+ .+||.||.+...+.
T Consensus 248 v~~s~p~~~~~~~~~d-~~~lP~~~~~~~~l~~~~t~~~~~-~~~~~~rk~~~~~t 301 (327)
T KOG2068|consen 248 VPPSCPICYEDLDLTD-SNFLPCPCGFRLCLFCHKTISDGD-GRCPGCRKPYERNT 301 (327)
T ss_pred cCCCCCCCCCcccccc-cccccccccccchhhhhhcccccC-CCCCccCCccccCc
Confidence 3579999999874443 34566 56665555655433443 46999998776553
No 219
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.69 E-value=67 Score=32.32 Aligned_cols=26 Identities=27% Similarity=0.634 Sum_probs=20.8
Q ss_pred HHHhcCCCCCCCccccCCCCCCCccc
Q 018233 330 SWLTKWGTFCPVCKHDMRNNSESNEV 355 (359)
Q Consensus 330 ~Wl~~~~~~CPlCR~~i~~~~~~~~~ 355 (359)
+|+.++..+||.|+..|......+.+
T Consensus 362 kwl~~N~krCP~C~v~IEr~eGCnKM 387 (445)
T KOG1814|consen 362 KWLESNSKRCPKCKVVIERSEGCNKM 387 (445)
T ss_pred HHHHhcCCCCCcccceeecCCCccce
Confidence 68888877899999998877666554
No 220
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=20.21 E-value=1.5e+02 Score=23.31 Aligned_cols=72 Identities=13% Similarity=0.129 Sum_probs=39.9
Q ss_pred cceEEEEEcCCCChHHHHHHHHH-cCCcEEE-EecccCc-cccc-cccCCCCcceeeEEeechhh---HHHHHHhhccC
Q 018233 147 HINFVLIVRGQCIFEDKIRNAQA-AGYRAAI-VYNDREK-GSLV-SMTASHEGVKVHAIFVSLET---GVYLKEHARGE 218 (359)
Q Consensus 147 ~~~ivLV~RG~CsF~~K~~~Aq~-aGA~avI-i~n~~~~-~~~~-~m~~~~~~i~Ip~v~i~~~~---G~~L~~~~~~~ 218 (359)
..+|++.-+..|.|-.+++...+ .|...-+ =++..++ .... .+..-...-++|.++|.... .+.|..+.+.+
T Consensus 7 ~~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl~~l~~~G 85 (99)
T TIGR02189 7 EKAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLENVMALHISG 85 (99)
T ss_pred cCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHHHHHHHHHcC
Confidence 35789999999999999999874 5654332 2222211 1111 11111122488999988642 23444444443
No 221
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=20.03 E-value=49 Score=34.71 Aligned_cols=35 Identities=26% Similarity=0.554 Sum_probs=24.2
Q ss_pred CCCcccccccccccCC----C-------ceEEecCCCcccHHHHHHH
Q 018233 296 HGGETCAICLEDYQDG----E-------KLKVLSCKHEFHASCVDSW 331 (359)
Q Consensus 296 ~~~~~C~ICLe~f~~~----~-------~vr~LpC~H~FH~~CI~~W 331 (359)
+....|+||-|.|+.- + .|. +.=|-+||..|+.+=
T Consensus 511 e~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~-le~G~ifH~~Cl~e~ 556 (579)
T KOG2071|consen 511 ERQASCPICQEKFEVVFDQEEDLWMYKDAVY-LEFGRIFHSKCLSEK 556 (579)
T ss_pred ccccCCcccccccceeecchhhheeecceee-eccCceeeccccchH
Confidence 4567999999998532 1 122 225789999998764
Done!