Query 018233
Match_columns 359
No_of_seqs 347 out of 3024
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 12:01:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018233.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018233hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3icu_A E3 ubiquitin-protein li 99.9 4.7E-23 1.6E-27 183.4 12.3 129 104-233 54-192 (194)
2 2l0b_A E3 ubiquitin-protein li 99.7 5.3E-17 1.8E-21 127.7 8.4 79 269-349 12-90 (91)
3 1x4j_A Ring finger protein 38; 99.6 9.8E-17 3.4E-21 121.4 5.1 70 277-349 4-73 (75)
4 2kiz_A E3 ubiquitin-protein li 99.5 5.9E-15 2E-19 109.5 6.6 56 295-351 11-66 (69)
5 2ep4_A Ring finger protein 24; 99.5 6.4E-15 2.2E-19 110.9 6.9 56 295-351 12-67 (74)
6 2ect_A Ring finger protein 126 99.5 4.8E-15 1.6E-19 112.7 5.6 59 295-354 12-70 (78)
7 1iym_A EL5; ring-H2 finger, ub 99.5 3E-15 1E-19 106.0 4.0 51 296-347 3-54 (55)
8 2ecl_A Ring-box protein 2; RNF 99.5 2.2E-14 7.7E-19 110.2 4.6 52 297-349 14-77 (81)
9 2ecm_A Ring finger and CHY zin 99.4 5.9E-14 2E-18 99.2 4.9 51 296-347 3-54 (55)
10 1v87_A Deltex protein 2; ring- 99.4 1.1E-13 3.9E-18 112.7 6.5 55 297-351 24-97 (114)
11 2d8s_A Cellular modulator of i 99.4 1E-13 3.5E-18 106.3 5.8 59 295-354 12-76 (80)
12 3dpl_R Ring-box protein 1; ubi 99.4 1.3E-13 4.3E-18 111.5 5.2 50 297-347 36-100 (106)
13 2ea6_A Ring finger protein 4; 99.4 1.9E-13 6.4E-18 101.0 5.1 53 295-348 12-68 (69)
14 3ng2_A RNF4, snurf, ring finge 99.4 1.4E-13 4.8E-18 102.4 4.1 56 295-351 7-66 (71)
15 2xeu_A Ring finger protein 4; 99.4 3E-13 1E-17 98.4 3.7 53 297-350 2-58 (64)
16 2djb_A Polycomb group ring fin 99.3 1.4E-12 4.8E-17 97.6 6.4 58 295-355 12-69 (72)
17 2d8t_A Dactylidin, ring finger 99.3 3E-13 1E-17 101.0 2.0 54 295-352 12-65 (71)
18 2ecn_A Ring finger protein 141 99.3 4.9E-13 1.7E-17 99.3 2.8 53 295-352 12-64 (70)
19 1chc_A Equine herpes virus-1 r 99.3 9.4E-13 3.2E-17 97.1 4.2 50 297-349 4-53 (68)
20 2ct2_A Tripartite motif protei 99.3 2.5E-12 8.5E-17 99.5 6.7 55 295-349 12-69 (88)
21 2ecy_A TNF receptor-associated 99.3 2.9E-12 1E-16 94.1 5.0 53 295-350 12-64 (66)
22 4a0k_B E3 ubiquitin-protein li 99.3 5.6E-13 1.9E-17 109.3 0.6 51 297-348 47-112 (117)
23 2ysl_A Tripartite motif-contai 99.3 4.8E-12 1.7E-16 94.5 5.7 53 295-350 17-71 (73)
24 2yur_A Retinoblastoma-binding 99.3 6.8E-12 2.3E-16 94.4 6.0 54 295-351 12-67 (74)
25 2ecw_A Tripartite motif-contai 99.2 1.5E-11 5.2E-16 94.1 6.7 57 295-354 16-77 (85)
26 2csy_A Zinc finger protein 183 99.2 8.9E-12 3.1E-16 95.3 5.2 49 295-347 12-60 (81)
27 1g25_A CDK-activating kinase a 99.2 8.6E-12 2.9E-16 91.3 4.8 55 298-352 3-59 (65)
28 1t1h_A Gspef-atpub14, armadill 99.2 1E-11 3.5E-16 94.1 5.0 55 295-352 5-59 (78)
29 2egp_A Tripartite motif-contai 99.2 4E-12 1.4E-16 96.4 2.3 56 295-353 9-70 (79)
30 2ecv_A Tripartite motif-contai 99.2 2.2E-11 7.7E-16 93.2 5.7 57 295-354 16-77 (85)
31 2ct0_A Non-SMC element 1 homol 99.2 1.9E-11 6.7E-16 92.0 5.0 54 296-351 13-67 (74)
32 2ysj_A Tripartite motif-contai 99.2 3.7E-11 1.3E-15 87.2 5.8 45 295-342 17-63 (63)
33 3lrq_A E3 ubiquitin-protein li 99.1 1.3E-11 4.4E-16 98.4 3.1 52 297-350 21-72 (100)
34 4ayc_A E3 ubiquitin-protein li 99.1 1.6E-11 5.6E-16 103.5 3.7 48 298-349 53-100 (138)
35 4ap4_A E3 ubiquitin ligase RNF 99.1 2E-11 7E-16 101.2 3.7 55 296-351 5-63 (133)
36 2ecj_A Tripartite motif-contai 99.1 3.9E-11 1.3E-15 85.4 4.4 45 295-342 12-58 (58)
37 3fl2_A E3 ubiquitin-protein li 99.1 5.4E-11 1.8E-15 98.3 4.9 49 297-348 51-99 (124)
38 3ztg_A E3 ubiquitin-protein li 99.1 1E-10 3.6E-15 91.3 6.1 50 295-347 10-61 (92)
39 4ap4_A E3 ubiquitin ligase RNF 99.1 6.1E-11 2.1E-15 98.3 3.4 53 297-350 71-127 (133)
40 2y43_A E3 ubiquitin-protein li 99.1 6.1E-11 2.1E-15 94.0 3.2 49 298-349 22-70 (99)
41 1jm7_A BRCA1, breast cancer ty 99.0 1.2E-10 4E-15 94.2 3.9 53 298-353 21-75 (112)
42 2ckl_A Polycomb group ring fin 99.0 1.4E-10 4.9E-15 93.4 3.8 50 297-349 14-63 (108)
43 1z6u_A NP95-like ring finger p 99.0 2.2E-10 7.6E-15 98.0 4.9 49 298-349 78-126 (150)
44 2ckl_B Ubiquitin ligase protei 99.0 2.1E-10 7E-15 99.5 4.6 50 297-348 53-102 (165)
45 1e4u_A Transcriptional repress 99.0 3E-10 1E-14 86.5 4.9 56 295-351 8-65 (78)
46 3hct_A TNF receptor-associated 99.0 1.7E-10 5.7E-15 94.6 3.7 52 295-349 15-66 (118)
47 1rmd_A RAG1; V(D)J recombinati 99.0 9.2E-11 3.1E-15 95.7 1.3 51 297-350 22-72 (116)
48 3l11_A E3 ubiquitin-protein li 98.9 1.3E-10 4.3E-15 94.8 1.3 49 297-348 14-62 (115)
49 1bor_A Transcription factor PM 98.9 2.5E-10 8.4E-15 81.2 1.5 50 296-352 4-53 (56)
50 2kre_A Ubiquitin conjugation f 98.9 1.4E-09 4.7E-14 86.7 5.0 54 295-352 26-79 (100)
51 2y1n_A E3 ubiquitin-protein li 98.9 1.2E-09 4.1E-14 106.5 4.7 50 297-349 331-380 (389)
52 2ek8_A Aminopeptidase; metallo 98.8 1.5E-08 5.2E-13 100.4 12.5 92 117-215 90-181 (421)
53 2kr4_A Ubiquitin conjugation f 98.8 1.9E-09 6.6E-14 83.2 4.4 53 295-351 11-63 (85)
54 2vje_A E3 ubiquitin-protein li 98.8 1.3E-09 4.3E-14 79.7 2.9 47 297-347 7-56 (64)
55 3knv_A TNF receptor-associated 98.8 7.8E-10 2.7E-14 93.7 1.9 52 295-349 28-79 (141)
56 1vyx_A ORF K3, K3RING; zinc-bi 98.8 2.4E-09 8.3E-14 77.2 3.9 50 296-348 4-59 (60)
57 1wgm_A Ubiquitin conjugation f 98.8 3.8E-09 1.3E-13 83.9 5.1 54 295-352 19-73 (98)
58 3iib_A Peptidase M28; YP_92679 98.8 2.1E-08 7.1E-13 100.2 11.0 106 109-219 95-217 (444)
59 2vje_B MDM4 protein; proto-onc 98.7 3.1E-09 1E-13 77.4 2.5 47 297-347 6-55 (63)
60 1jm7_B BARD1, BRCA1-associated 98.7 2.3E-09 7.9E-14 87.6 1.4 49 297-351 21-70 (117)
61 2c2l_A CHIP, carboxy terminus 98.7 7.2E-09 2.5E-13 96.3 4.1 54 295-351 205-258 (281)
62 4ic3_A E3 ubiquitin-protein li 98.7 5.3E-09 1.8E-13 78.5 2.1 43 298-348 24-67 (74)
63 3k1l_B Fancl; UBC, ring, RWD, 98.7 4.4E-09 1.5E-13 100.1 1.3 55 295-349 305-374 (381)
64 3hcs_A TNF receptor-associated 98.7 8.2E-09 2.8E-13 89.7 3.0 52 295-349 15-66 (170)
65 2yu4_A E3 SUMO-protein ligase 98.6 1.3E-08 4.5E-13 80.0 3.3 51 296-349 5-64 (94)
66 2f42_A STIP1 homology and U-bo 98.6 2.3E-08 7.9E-13 87.7 3.5 54 295-351 103-156 (179)
67 2ea5_A Cell growth regulator w 98.6 4.4E-08 1.5E-12 72.3 4.3 47 295-349 12-59 (68)
68 1wim_A KIAA0161 protein; ring 98.6 2.7E-08 9.2E-13 78.0 3.0 49 297-345 4-61 (94)
69 2ecg_A Baculoviral IAP repeat- 98.5 3.7E-08 1.3E-12 74.0 2.4 44 298-349 25-69 (75)
70 3fed_A Glutamate carboxypeptid 98.5 1.6E-07 5.5E-12 98.6 7.8 99 116-217 123-268 (707)
71 2yho_A E3 ubiquitin-protein li 98.3 1.2E-07 4.1E-12 72.1 1.6 43 298-348 18-61 (79)
72 3kas_A Transferrin receptor pr 98.3 8E-07 2.8E-11 92.4 8.0 96 117-216 105-230 (640)
73 2bay_A PRE-mRNA splicing facto 98.3 3.4E-07 1.2E-11 66.1 2.5 51 298-352 3-54 (61)
74 3t6p_A Baculoviral IAP repeat- 98.2 3.4E-07 1.2E-11 88.4 1.1 44 297-348 294-338 (345)
75 3htk_C E3 SUMO-protein ligase 98.1 5.1E-07 1.7E-11 83.2 1.8 55 296-352 179-236 (267)
76 3vk6_A E3 ubiquitin-protein li 98.1 3.2E-06 1.1E-10 66.3 4.3 48 300-349 3-50 (101)
77 3i6s_A Subtilisin-like proteas 98.0 8.2E-06 2.8E-10 85.1 6.6 88 123-218 260-347 (649)
78 1y9z_A Alkaline serine proteas 97.8 3.5E-05 1.2E-09 76.6 8.6 72 146-217 272-350 (441)
79 1xf1_A C5A peptidase, SCP; hyd 97.7 6.2E-05 2.1E-09 81.5 8.3 75 131-213 269-343 (926)
80 3nw0_A Non-structural maintena 97.6 2.8E-05 9.7E-10 71.1 3.5 51 297-349 179-230 (238)
81 2lri_C Autoimmune regulator; Z 93.8 0.055 1.9E-06 39.1 3.8 48 296-346 10-60 (66)
82 2jun_A Midline-1; B-BOX, TRIM, 92.6 0.072 2.5E-06 41.3 3.0 33 298-330 3-35 (101)
83 2ko5_A Ring finger protein Z; 92.5 0.091 3.1E-06 40.4 3.4 52 295-352 25-77 (99)
84 1wil_A KIAA1045 protein; ring 90.6 0.37 1.3E-05 36.3 4.9 34 294-331 11-47 (89)
85 2k16_A Transcription initiatio 85.9 0.24 8.3E-06 36.3 1.2 53 296-348 16-71 (75)
86 3vta_A Cucumisin; subtilisin-l 85.4 1.1 3.6E-05 46.2 6.1 60 146-216 280-339 (621)
87 2ysm_A Myeloid/lymphoid or mix 85.4 0.22 7.6E-06 39.4 0.8 49 295-343 4-55 (111)
88 2l5u_A Chromodomain-helicase-D 83.8 0.58 2E-05 32.9 2.4 47 295-344 8-57 (61)
89 3v43_A Histone acetyltransfera 83.8 0.86 3E-05 36.1 3.6 47 297-343 4-62 (112)
90 1fp0_A KAP-1 corepressor; PHD 82.1 0.61 2.1E-05 35.6 2.0 51 295-348 22-75 (88)
91 3lqh_A Histone-lysine N-methyl 81.0 0.43 1.5E-05 41.5 0.9 49 298-346 2-64 (183)
92 1we9_A PHD finger family prote 80.6 0.4 1.4E-05 34.0 0.5 50 296-345 4-58 (64)
93 2yql_A PHD finger protein 21A; 78.5 0.19 6.7E-06 34.8 -1.7 47 295-344 6-55 (56)
94 1f62_A Transcription factor WS 78.4 0.82 2.8E-05 30.7 1.5 45 300-344 2-49 (51)
95 2lbm_A Transcriptional regulat 77.7 2 6.8E-05 35.7 3.9 47 295-344 60-116 (142)
96 3o36_A Transcription intermedi 77.6 0.46 1.6E-05 41.0 -0.0 47 297-346 3-52 (184)
97 3u5n_A E3 ubiquitin-protein li 77.2 0.38 1.3E-05 42.4 -0.7 49 295-346 4-55 (207)
98 2yt5_A Metal-response element- 77.1 0.31 1.1E-05 34.7 -1.0 52 296-347 4-63 (66)
99 1mm2_A MI2-beta; PHD, zinc fin 76.8 0.54 1.9E-05 33.1 0.2 48 295-345 6-56 (61)
100 2cu8_A Cysteine-rich protein 2 74.5 1.3 4.4E-05 32.0 1.7 42 297-349 8-49 (76)
101 1wep_A PHF8; structural genomi 73.7 3.4 0.00012 30.4 3.9 51 297-348 11-66 (79)
102 1iml_A CRIP, cysteine rich int 71.9 1.1 3.9E-05 32.3 0.9 11 300-310 29-39 (76)
103 2kwj_A Zinc finger protein DPF 71.3 1 3.4E-05 35.8 0.5 33 299-331 2-41 (114)
104 2e6s_A E3 ubiquitin-protein li 70.9 0.83 2.8E-05 33.8 -0.1 46 299-344 27-76 (77)
105 2puy_A PHD finger protein 21A; 70.3 0.29 1E-05 34.3 -2.6 48 297-347 4-54 (60)
106 3m62_A Ubiquitin conjugation f 70.2 2.5 8.4E-05 45.5 3.3 54 295-352 888-942 (968)
107 2dj7_A Actin-binding LIM prote 69.9 2.5 8.7E-05 31.0 2.5 41 297-348 14-54 (80)
108 1wem_A Death associated transc 67.6 2.2 7.5E-05 31.2 1.7 48 298-346 16-71 (76)
109 2vpb_A Hpygo1, pygopus homolog 67.2 4.2 0.00014 28.9 3.0 35 295-329 5-41 (65)
110 2xb1_A Pygopus homolog 2, B-ce 67.1 0.91 3.1E-05 35.7 -0.6 51 298-348 3-64 (105)
111 2kgg_A Histone demethylase jar 67.0 4.5 0.00015 27.2 3.0 44 300-343 4-52 (52)
112 2ro1_A Transcription intermedi 66.6 0.94 3.2E-05 39.4 -0.7 46 298-346 2-50 (189)
113 2co8_A NEDD9 interacting prote 65.6 3.2 0.00011 30.5 2.2 43 297-350 14-56 (82)
114 3ql9_A Transcriptional regulat 65.3 6 0.00021 32.2 4.0 47 295-344 54-110 (129)
115 3asl_A E3 ubiquitin-protein li 64.6 1.1 3.9E-05 32.4 -0.5 45 300-344 20-68 (70)
116 1xwh_A Autoimmune regulator; P 62.9 1.2 4.2E-05 31.7 -0.5 47 296-345 6-55 (66)
117 2e6r_A Jumonji/ARID domain-con 60.4 0.84 2.9E-05 35.0 -1.9 51 295-345 13-66 (92)
118 1x4k_A Skeletal muscle LIM-pro 60.1 5.4 0.00019 28.1 2.6 42 298-349 5-46 (72)
119 2ri7_A Nucleosome-remodeling f 59.6 2.5 8.5E-05 35.8 0.7 49 296-345 6-59 (174)
120 1x63_A Skeletal muscle LIM-pro 59.5 6 0.0002 28.7 2.8 42 298-349 15-56 (82)
121 2d8y_A Eplin protein; LIM doma 58.8 7.1 0.00024 29.0 3.2 42 297-349 14-55 (91)
122 1a7i_A QCRP2 (LIM1); LIM domai 58.7 2.7 9.1E-05 30.7 0.7 42 298-350 7-48 (81)
123 1x61_A Thyroid receptor intera 58.6 6.3 0.00022 27.7 2.7 41 298-348 5-45 (72)
124 1wyh_A SLIM 2, skeletal muscle 58.6 5.8 0.0002 27.9 2.5 42 298-349 5-46 (72)
125 1wev_A Riken cDNA 1110020M19; 58.6 1.2 4.1E-05 33.8 -1.3 53 297-349 15-76 (88)
126 2cor_A Pinch protein; LIM doma 58.3 5.1 0.00017 29.1 2.2 41 297-349 14-54 (79)
127 3v43_A Histone acetyltransfera 58.3 2.6 9E-05 33.2 0.6 46 299-344 62-111 (112)
128 1g47_A Pinch protein; LIM doma 58.3 5.6 0.00019 28.4 2.4 43 297-349 10-52 (77)
129 2d8x_A Protein pinch; LIM doma 57.9 5.5 0.00019 27.9 2.3 41 298-350 5-45 (70)
130 3shb_A E3 ubiquitin-protein li 57.4 1.3 4.4E-05 32.8 -1.3 46 300-345 28-77 (77)
131 1x4l_A Skeletal muscle LIM-pro 57.2 6.1 0.00021 27.9 2.4 42 298-349 5-48 (72)
132 1x64_A Alpha-actinin-2 associa 57.0 8.3 0.00029 28.5 3.3 43 295-349 22-64 (89)
133 2cs3_A Protein C14ORF4, MY039 56.5 12 0.00041 27.8 3.9 38 296-334 13-52 (93)
134 1weo_A Cellulose synthase, cat 56.5 24 0.00082 26.7 5.6 52 297-348 15-70 (93)
135 1x68_A FHL5 protein; four-and- 56.1 6.2 0.00021 28.2 2.3 41 298-348 5-47 (76)
136 1weu_A Inhibitor of growth fam 54.6 5.7 0.00019 30.3 1.9 45 297-345 35-85 (91)
137 1wew_A DNA-binding family prot 54.6 4.5 0.00015 29.7 1.3 49 297-346 15-73 (78)
138 2dar_A PDZ and LIM domain prot 54.0 7.4 0.00025 28.9 2.5 41 297-349 24-64 (90)
139 2d8v_A Zinc finger FYVE domain 53.8 7.5 0.00026 27.8 2.3 33 295-331 5-38 (67)
140 2d8z_A Four and A half LIM dom 53.6 10 0.00034 26.5 3.1 40 298-349 5-44 (70)
141 1wen_A Inhibitor of growth fam 52.0 7.5 0.00026 28.1 2.1 45 297-345 15-65 (71)
142 3ask_A E3 ubiquitin-protein li 51.4 2.8 9.7E-05 37.4 -0.3 48 298-345 174-225 (226)
143 2lv9_A Histone-lysine N-methyl 50.7 4.8 0.00016 31.0 1.0 46 298-344 28-75 (98)
144 1x62_A C-terminal LIM domain p 50.4 9.2 0.00031 27.6 2.5 40 296-347 13-52 (79)
145 1v6g_A Actin binding LIM prote 50.3 7.8 0.00027 28.0 2.1 39 299-349 16-54 (81)
146 1m3v_A FLIN4, fusion of the LI 48.8 15 0.00052 28.9 3.7 47 300-348 34-81 (122)
147 3f6q_B LIM and senescent cell 48.0 9.5 0.00032 26.5 2.2 43 297-349 10-52 (72)
148 1x6a_A LIMK-2, LIM domain kina 47.5 6 0.00021 28.6 1.0 38 299-348 16-53 (81)
149 1zfo_A LAsp-1; LIM domain, zin 47.5 4.3 0.00015 24.3 0.2 29 298-328 3-31 (31)
150 1nyp_A Pinch protein; LIM doma 47.1 9 0.00031 26.4 1.9 40 298-349 5-44 (66)
151 2ku3_A Bromodomain-containing 46.3 17 0.00058 26.2 3.3 51 295-345 13-66 (71)
152 2l3k_A Rhombotin-2, linker, LI 45.5 6.8 0.00023 31.0 1.2 35 299-334 37-71 (123)
153 4fo9_A E3 SUMO-protein ligase 45.2 12 0.00041 35.7 2.9 48 300-349 217-267 (360)
154 2l43_A N-teminal domain from h 44.8 13 0.00044 28.0 2.5 55 295-349 22-79 (88)
155 2cur_A Skeletal muscle LIM-pro 44.6 10 0.00035 26.4 1.9 39 298-348 5-43 (69)
156 1wd2_A Ariadne-1 protein homol 43.7 7.7 0.00026 27.0 1.1 19 332-350 2-20 (60)
157 2kwj_A Zinc finger protein DPF 42.5 1.3 4.5E-05 35.2 -3.6 47 300-346 60-109 (114)
158 2l4z_A DNA endonuclease RBBP8, 41.0 9.1 0.00031 30.5 1.2 39 298-347 61-99 (123)
159 2rsd_A E3 SUMO-protein ligase 41.0 2.6 8.7E-05 30.2 -1.9 46 298-344 10-64 (68)
160 1z60_A TFIIH basal transcripti 40.4 15 0.0005 25.6 2.1 43 299-342 16-58 (59)
161 2yw8_A RUN and FYVE domain-con 40.2 17 0.00058 26.7 2.6 34 297-330 18-52 (82)
162 2egq_A FHL1 protein; LIM domai 39.9 16 0.00055 25.9 2.4 42 298-349 15-59 (77)
163 3i2d_A E3 SUMO-protein ligase 39.8 18 0.00061 34.7 3.2 49 299-349 250-301 (371)
164 2ysm_A Myeloid/lymphoid or mix 39.1 5.1 0.00018 31.3 -0.6 46 300-345 56-104 (111)
165 2cup_A Skeletal muscle LIM-pro 38.8 20 0.00068 26.8 2.8 47 298-349 33-79 (101)
166 1b8t_A Protein (CRP1); LIM dom 38.6 11 0.00038 32.2 1.5 40 298-348 115-154 (192)
167 4gne_A Histone-lysine N-methyl 38.0 16 0.00056 28.5 2.2 48 295-347 12-64 (107)
168 1wig_A KIAA1808 protein; LIM d 37.6 16 0.00053 25.9 1.9 38 298-347 5-42 (73)
169 2cuq_A Four and A half LIM dom 37.0 16 0.00056 26.1 2.0 39 298-348 15-53 (80)
170 3c6w_A P28ING5, inhibitor of g 35.1 5.8 0.0002 27.5 -0.7 44 297-344 8-57 (59)
171 1zbd_B Rabphilin-3A; G protein 35.0 14 0.00048 30.1 1.5 33 296-328 53-87 (134)
172 2vnf_A ING 4, P29ING4, inhibit 34.7 5.8 0.0002 27.6 -0.8 44 297-344 9-58 (60)
173 1z2q_A LM5-1; membrane protein 33.7 25 0.00086 25.9 2.6 34 297-330 20-54 (84)
174 2ehe_A Four and A half LIM dom 33.6 17 0.00057 26.2 1.6 42 298-349 15-56 (82)
175 2iyb_E Testin, TESS, TES; LIM 32.7 15 0.00053 25.2 1.2 41 299-349 3-45 (65)
176 2xqn_T Testin, TESS; metal-bin 32.2 23 0.00078 27.7 2.3 47 298-349 30-76 (126)
177 2dlo_A Thyroid receptor-intera 32.0 17 0.00058 26.1 1.4 40 298-349 15-54 (81)
178 1x3h_A Leupaxin; paxillin fami 31.8 17 0.00058 26.0 1.3 40 298-349 15-54 (80)
179 1wfk_A Zinc finger, FYVE domai 31.8 31 0.0011 25.7 2.9 52 296-347 7-65 (88)
180 2gmg_A Hypothetical protein PF 31.8 10 0.00035 29.6 0.1 24 319-348 73-96 (105)
181 3t7l_A Zinc finger FYVE domain 30.7 22 0.00075 26.7 1.8 34 298-331 20-54 (90)
182 1vfy_A Phosphatidylinositol-3- 30.1 31 0.0011 24.7 2.5 32 298-329 11-43 (73)
183 2o35_A Hypothetical protein DU 30.0 21 0.00071 27.6 1.5 13 322-334 42-54 (105)
184 3fyb_A Protein of unknown func 29.8 21 0.00072 27.5 1.5 13 322-334 41-53 (104)
185 1rut_X Flinc4, fusion protein 29.3 25 0.00084 29.9 2.2 39 300-348 71-109 (188)
186 1joc_A EEA1, early endosomal a 28.9 24 0.00081 28.3 1.8 32 298-329 69-101 (125)
187 3mjh_B Early endosome antigen 28.4 6.8 0.00023 24.2 -1.1 15 298-312 5-19 (34)
188 3kqi_A GRC5, PHD finger protei 27.8 20 0.00069 25.8 1.1 49 299-347 10-63 (75)
189 1x4u_A Zinc finger, FYVE domai 27.8 32 0.0011 25.3 2.3 33 297-329 13-46 (84)
190 2l2t_A Receptor tyrosine-prote 27.5 27 0.00091 22.8 1.5 9 252-260 30-38 (44)
191 1j2o_A FLIN2, fusion of rhombo 27.5 28 0.00096 26.9 2.0 27 299-327 4-30 (114)
192 2xjy_A Rhombotin-2; oncoprotei 26.3 31 0.0011 27.1 2.1 39 300-348 68-106 (131)
193 2klu_A T-cell surface glycopro 26.2 23 0.00077 25.3 1.1 21 237-257 13-33 (70)
194 2rgt_A Fusion of LIM/homeobox 26.1 38 0.0013 28.1 2.7 40 299-348 66-105 (169)
195 1dvp_A HRS, hepatocyte growth 26.0 27 0.00093 30.5 1.9 34 297-330 160-194 (220)
196 3zyq_A Hepatocyte growth facto 25.9 28 0.00097 30.7 2.0 34 297-330 163-197 (226)
197 2jvx_A NF-kappa-B essential mo 25.7 20 0.00068 21.1 0.6 11 338-348 5-15 (28)
198 2ks1_B Epidermal growth factor 25.7 28 0.00097 22.7 1.4 8 252-259 31-38 (44)
199 2g6q_A Inhibitor of growth pro 25.6 11 0.00037 26.4 -0.7 44 297-344 10-59 (62)
200 1wee_A PHD finger family prote 24.6 32 0.0011 24.5 1.7 48 297-345 15-66 (72)
201 2jtn_A LIM domain-binding prot 23.6 34 0.0012 28.8 2.0 47 297-349 86-132 (182)
202 3o7a_A PHD finger protein 13 v 23.1 9.9 0.00034 25.4 -1.3 42 303-344 8-51 (52)
203 1iko_P Ephrin-B2; greek KEY, g 23.0 25 0.00086 30.1 1.0 10 3-12 105-114 (178)
204 2k5f_A Ferrous iron transport 20.1 30 0.001 26.7 0.8 11 18-28 86-96 (105)
No 1
>3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens}
Probab=99.89 E-value=4.7e-23 Score=183.39 Aligned_cols=129 Identities=22% Similarity=0.342 Sum_probs=102.7
Q ss_pred ccccccccccccCCCCeeEEEeeCC---CCCCCCCCCCCCCCC----CCCcceEEEEEcCC-CChHHHHHHHHHcCCcEE
Q 018233 104 FPDLPAKFAVDVNSSGTCGALHVAD---PADACSPLSNPVASN----DADHINFVLIVRGQ-CIFEDKIRNAQAAGYRAA 175 (359)
Q Consensus 104 f~~~~A~FG~~~~~~~~~g~L~~~~---p~~aC~~~~~~~~~~----~~~~~~ivLV~RG~-CsF~~K~~~Aq~aGA~av 175 (359)
+.+.+|+||..++..++.|.|+.+. |.+||++.++...+. +..+++||||+||+ |+|.+|++|||++||+||
T Consensus 54 ~~~e~a~FG~~~p~~~v~G~lv~~~~~~~~~GC~~~~~~~~~~~~~~~~~~gkIaLV~RG~~CsF~~Kv~nAq~aGA~av 133 (194)
T 3icu_A 54 ELSEEGVYGQDSPLEPVAGVLVPPDGPGALNACNPHTNFTVPTVWGSTVQVSWLALIQRGGGCTFADKIHLAYERGASGA 133 (194)
T ss_dssp EEEEEEEECTTSCCSCEEEEEECBSSTTCTTCCSTTCCBCCCBCTTSSCBCCEEEEEESCTTCCHHHHHHHHHHTTCSEE
T ss_pred ecccccccCCCCCCCCcEEEEEecCCCCCcCCCCCCccccCCcccccccCCCeEEEEECCCCcCHHHHHHHHHHCCCcEE
Confidence 6678999999999999999999764 789999987643221 12368999999999 999999999999999999
Q ss_pred EEeccc-CccccccccCCCCcceeeEEeechhhHHHHHHhhccC-CCceeecCCCCCccc
Q 018233 176 IVYNDR-EKGSLVSMTASHEGVKVHAIFVSLETGVYLKEHARGE-TGECCIFPESNRGSW 233 (359)
Q Consensus 176 Ii~n~~-~~~~~~~m~~~~~~i~Ip~v~i~~~~G~~L~~~~~~~-~~~v~I~~~~~~~~~ 233 (359)
||||+. ++..+.+|..++ ...||++||++++|+.|+++++.+ .+.+.+.....+++|
T Consensus 134 IIyNn~~~g~~~~~m~~~~-~~~IPsv~Is~~~G~~L~~~L~~G~~Vtvti~vg~~h~pw 192 (194)
T 3icu_A 134 VIFNFPGTRNEVIPMSHPG-AVDIVAIMIGNLKGTKILQSIQRGIQVTMVIEVGKKHGPW 192 (194)
T ss_dssp EEECCTTCTTCCCCCCCTT-CCSSEEEEECHHHHHHHHHHHHTTCCEEEEEEEEEEECCC
T ss_pred EEEeCCCCCCceeeecCCC-CCceeEEEECHHHHHHHHHHHHCCCeEEEEEECCCccCCC
Confidence 999985 334556666443 458999999999999999988765 444555555555555
No 2
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.69 E-value=5.3e-17 Score=127.73 Aligned_cols=79 Identities=30% Similarity=0.654 Sum_probs=67.8
Q ss_pred ccccccchhhhhccceeeeccCCCcCCCCCcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCC
Q 018233 269 PLSRRLDSKVVEALPCFLFSSASSSQCHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRN 348 (359)
Q Consensus 269 ~~~~~l~~~~i~~lp~~~~~~~~~~~~~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (359)
....++++..++.+|...+...... ...+..|+||+++|..++.++.|||+|.||..||+.|++.+. +||+||..+..
T Consensus 12 ~~~~~~s~~~i~~lp~~~~~~~~~~-~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~-~CP~Cr~~~~~ 89 (91)
T 2l0b_A 12 VANPPASKESIDALPEILVTEDHGA-VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSG-TCPVCRCMFPP 89 (91)
T ss_dssp SCCCCCCHHHHHTSCEEECCTTCSS-SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTC-BCTTTCCBSSC
T ss_pred cCCCCCCHHHHHhCCCeeecccccc-cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCC-cCcCcCccCCC
Confidence 3466889999999999988764433 456779999999999999999999999999999999999876 59999998865
Q ss_pred C
Q 018233 349 N 349 (359)
Q Consensus 349 ~ 349 (359)
.
T Consensus 90 ~ 90 (91)
T 2l0b_A 90 P 90 (91)
T ss_dssp C
T ss_pred C
Confidence 3
No 3
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=9.8e-17 Score=121.38 Aligned_cols=70 Identities=34% Similarity=0.819 Sum_probs=58.8
Q ss_pred hhhhccceeeeccCCCcCCCCCcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCC
Q 018233 277 KVVEALPCFLFSSASSSQCHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (359)
Q Consensus 277 ~~i~~lp~~~~~~~~~~~~~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (359)
..++.+|..+++... ...+...|+||+++|+.++.++.+||+|.||.+||.+|++.+. .||+||+++...
T Consensus 4 ~~i~~lp~~~~~~~~--~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~-~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 4 GSSGQLPSYRFNPNN--HQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANR-TCPICRADSGPS 73 (75)
T ss_dssp CCCSSCCCEEBCSSS--CSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCS-SCTTTCCCCCCC
T ss_pred hhHhhCCcEEecCcc--ccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCC-cCcCcCCcCCCC
Confidence 356778887777533 2345779999999999999999999999999999999999876 599999998764
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.55 E-value=5.9e-15 Score=109.54 Aligned_cols=56 Identities=38% Similarity=0.854 Sum_probs=49.6
Q ss_pred CCCCcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCCCC
Q 018233 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNSE 351 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~~ 351 (359)
......|+||++.|..++.++.+||+|.||..||.+|+..+. +||+||..+.....
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~-~CP~Cr~~~~~~~~ 66 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNK-KCPICRVDIEAQLP 66 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCS-BCTTTCSBSCSCCC
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCC-CCcCcCccccCcCC
Confidence 455679999999999988899999999999999999999977 49999999876543
No 5
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=6.4e-15 Score=110.88 Aligned_cols=56 Identities=34% Similarity=0.824 Sum_probs=49.8
Q ss_pred CCCCcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCCCC
Q 018233 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNSE 351 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~~ 351 (359)
......|+||+++|..++.+++|||+|.||.+||.+|++.+. .||+||+++.....
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~-~CP~Cr~~~~~~~~ 67 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRK-VCPLCNMPVLQLAQ 67 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCS-BCTTTCCBCSSCCS
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCC-cCCCcCcccccccc
Confidence 445779999999999999999999999999999999999877 59999999876544
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.54 E-value=4.8e-15 Score=112.73 Aligned_cols=59 Identities=36% Similarity=0.903 Sum_probs=51.4
Q ss_pred CCCCcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCCCCCcc
Q 018233 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNSESNE 354 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~~~~~ 354 (359)
.....+|+||+++|..++.++.|+|+|.||.+||..|++.+. +||+||..+.......+
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~-~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHD-SCPVCRKSLTGQNTATN 70 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTC-SCTTTCCCCCCSCSCCC
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCC-cCcCcCCccCCcccCCC
Confidence 445779999999999999999999999999999999998876 59999999987655543
No 7
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.54 E-value=3e-15 Score=106.03 Aligned_cols=51 Identities=43% Similarity=1.051 Sum_probs=46.1
Q ss_pred CCCcccccccccccCCCceEEec-CCCcccHHHHHHHHhcCCCCCCCccccCC
Q 018233 296 HGGETCAICLEDYQDGEKLKVLS-CKHEFHASCVDSWLTKWGTFCPVCKHDMR 347 (359)
Q Consensus 296 ~~~~~C~ICLe~f~~~~~vr~Lp-C~H~FH~~CI~~Wl~~~~~~CPlCR~~i~ 347 (359)
+++.+|+||+++|+.++.++.+| |+|.||.+||.+|++.+. +||+||+++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~-~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHS-TCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCC-SCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCC-cCcCCCCEeE
Confidence 45679999999999999999998 999999999999998866 5999999874
No 8
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=2.2e-14 Score=110.22 Aligned_cols=52 Identities=33% Similarity=0.787 Sum_probs=41.7
Q ss_pred CCcccccccccccC-----------CCceEEec-CCCcccHHHHHHHHhcCCCCCCCccccCCCC
Q 018233 297 GGETCAICLEDYQD-----------GEKLKVLS-CKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (359)
Q Consensus 297 ~~~~C~ICLe~f~~-----------~~~vr~Lp-C~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (359)
+++.|+||+++|++ ++.++.++ |+|.||.+||++||+.++ +||+||+++...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~-~CP~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNN-RCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCC-BCTTTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCC-CCCCcCCCcchh
Confidence 35678888877754 45567776 999999999999999977 599999987643
No 9
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.45 E-value=5.9e-14 Score=99.23 Aligned_cols=51 Identities=33% Similarity=0.704 Sum_probs=43.9
Q ss_pred CCCcccccccccccCC-CceEEecCCCcccHHHHHHHHhcCCCCCCCccccCC
Q 018233 296 HGGETCAICLEDYQDG-EKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMR 347 (359)
Q Consensus 296 ~~~~~C~ICLe~f~~~-~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~ 347 (359)
.+..+|+||+++|..+ +.++.++|+|.||.+||.+|++.+. .||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGY-RCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTC-CCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCC-cCCCCCCcCC
Confidence 3567999999999665 4578899999999999999999975 5999998874
No 10
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.44 E-value=1.1e-13 Score=112.70 Aligned_cols=55 Identities=25% Similarity=0.537 Sum_probs=43.7
Q ss_pred CCcccccccccccCCC---------------ceEEecCCCcccHHHHHHHHhc----CCCCCCCccccCCCCCC
Q 018233 297 GGETCAICLEDYQDGE---------------KLKVLSCKHEFHASCVDSWLTK----WGTFCPVCKHDMRNNSE 351 (359)
Q Consensus 297 ~~~~C~ICLe~f~~~~---------------~vr~LpC~H~FH~~CI~~Wl~~----~~~~CPlCR~~i~~~~~ 351 (359)
.++.|+|||++|..++ .++.++|+|.||.+||+.|+.. .+.+||+||..+.....
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g 97 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTG 97 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCC
Confidence 3569999999997653 4557899999999999999952 23469999998876543
No 11
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=1e-13 Score=106.30 Aligned_cols=59 Identities=22% Similarity=0.589 Sum_probs=48.7
Q ss_pred CCCCcccccccccccCCCceEEecCC-----CcccHHHHHHHHhcCC-CCCCCccccCCCCCCCcc
Q 018233 295 CHGGETCAICLEDYQDGEKLKVLSCK-----HEFHASCVDSWLTKWG-TFCPVCKHDMRNNSESNE 354 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~~~vr~LpC~-----H~FH~~CI~~Wl~~~~-~~CPlCR~~i~~~~~~~~ 354 (359)
..+++.|.||+++|++++.+ ++||+ |.||.+||++||..++ .+||+||+.+.......+
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~~P 76 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLSG 76 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCSCC
T ss_pred CCCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcccCC
Confidence 34567999999999988776 68996 9999999999999864 469999999976654443
No 12
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.41 E-value=1.3e-13 Score=111.46 Aligned_cols=50 Identities=28% Similarity=0.634 Sum_probs=42.7
Q ss_pred CCcccccccccccCC---------------CceEEecCCCcccHHHHHHHHhcCCCCCCCccccCC
Q 018233 297 GGETCAICLEDYQDG---------------EKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMR 347 (359)
Q Consensus 297 ~~~~C~ICLe~f~~~---------------~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~ 347 (359)
+++.|+||+++|+.. ..++.++|+|.||.+||++||..+. +||+||+++.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~-~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ-VCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCS-BCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCC-cCcCCCCcce
Confidence 468999999999865 1367889999999999999999866 5999999864
No 13
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=1.9e-13 Score=100.96 Aligned_cols=53 Identities=25% Similarity=0.678 Sum_probs=44.9
Q ss_pred CCCCcccccccccccCC----CceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCC
Q 018233 295 CHGGETCAICLEDYQDG----EKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRN 348 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~----~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (359)
..+...|+||++.|.+. +.+..++|+|.||.+||+.|+..+. .||+||.++..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCS-SCTTTCCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCC-CCCCCCCccCc
Confidence 44577999999998763 4557889999999999999999866 59999998864
No 14
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.40 E-value=1.4e-13 Score=102.39 Aligned_cols=56 Identities=23% Similarity=0.629 Sum_probs=47.1
Q ss_pred CCCCcccccccccccCC----CceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCCCC
Q 018233 295 CHGGETCAICLEDYQDG----EKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNSE 351 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~----~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~~ 351 (359)
.++..+|+||+++|.+. +.+..++|||.||.+||++|++.+. +||+||..+...+.
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~~~~~ 66 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKINHKRY 66 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCS-BCTTTCCBCCCCSC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCC-CCCCCCCccChhhe
Confidence 34567999999998763 5668899999999999999999876 59999999886644
No 15
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.36 E-value=3e-13 Score=98.37 Aligned_cols=53 Identities=23% Similarity=0.649 Sum_probs=45.0
Q ss_pred CCcccccccccccCC----CceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCCC
Q 018233 297 GGETCAICLEDYQDG----EKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNS 350 (359)
Q Consensus 297 ~~~~C~ICLe~f~~~----~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~ 350 (359)
+..+|+||++++.+. +.+..++|||.||.+||.+|++.+. .||+||.++...+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~~~~ 58 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKINHKR 58 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCS-BCTTTCCBCTTTC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCC-CCCCCCccCCccc
Confidence 357999999998753 5568889999999999999999866 5999999987653
No 16
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=1.4e-12 Score=97.56 Aligned_cols=58 Identities=21% Similarity=0.371 Sum_probs=47.0
Q ss_pred CCCCcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCCCCCccc
Q 018233 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNSESNEV 355 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~~~~~~ 355 (359)
..+...|+||++.+.+. +..++|+|.||..||..|++.+. .||+||..+.........
T Consensus 12 ~~~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~~-~CP~Cr~~~~~~~~~~~~ 69 (72)
T 2djb_A 12 LTPYILCSICKGYLIDA--TTITECLHTFCKSCIVRHFYYSN-RCPKCNIVVHQTQPLSGP 69 (72)
T ss_dssp CCGGGSCTTTSSCCSSC--EECSSSCCEECHHHHHHHHHHCS-SCTTTCCCCCSSCSCCCC
T ss_pred cCCCCCCCCCChHHHCc--CEECCCCCHHHHHHHHHHHHcCC-cCCCcCcccCcccccccC
Confidence 44567999999998874 34449999999999999998865 599999999877665543
No 17
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=3e-13 Score=101.02 Aligned_cols=54 Identities=26% Similarity=0.461 Sum_probs=44.7
Q ss_pred CCCCcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCCCCC
Q 018233 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNSES 352 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~~~ 352 (359)
..+...|+||++.+.+. ..+||+|.||..||..|+..+. .||+||..+......
T Consensus 12 ~~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~-~CP~Cr~~~~~~~~~ 65 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHP---VSLPCKHVFCYLCVKGASWLGK-RCALCRQEIPEDFLD 65 (71)
T ss_dssp SSSCCBCSSSSSBCSSE---EEETTTEEEEHHHHHHCTTCSS-BCSSSCCBCCHHHHS
T ss_pred CCCCCCCccCCcccCCC---EEccCCCHHHHHHHHHHHHCCC-cCcCcCchhCHhhcc
Confidence 34567999999998664 6789999999999999998875 599999998765433
No 18
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=4.9e-13 Score=99.34 Aligned_cols=53 Identities=34% Similarity=0.884 Sum_probs=45.0
Q ss_pred CCCCcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCCCCC
Q 018233 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNSES 352 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~~~ 352 (359)
..+...|+||++.+.. ..+||+|.||..||..|+..+. .||+||..+......
T Consensus 12 ~~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~~~~~~ 64 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHR-NCPICRLQMTGANES 64 (70)
T ss_dssp CCCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCS-SCHHHHHCTTCCCCC
T ss_pred CCCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcC-cCCCcCCcccCCCcc
Confidence 3456799999999876 7899999999999999999755 599999998866543
No 19
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.31 E-value=9.4e-13 Score=97.15 Aligned_cols=50 Identities=34% Similarity=0.768 Sum_probs=42.9
Q ss_pred CCcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCC
Q 018233 297 GGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (359)
Q Consensus 297 ~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (359)
....|+||++.+.+ ..+.+||||.||.+||..|++.+. .||+||.++...
T Consensus 4 ~~~~C~IC~~~~~~--~~~~~~C~H~fc~~Ci~~~~~~~~-~CP~Cr~~~~~~ 53 (68)
T 1chc_A 4 VAERCPICLEDPSN--YSMALPCLHAFCYVCITRWIRQNP-TCPLCKVPVESV 53 (68)
T ss_dssp CCCCCSSCCSCCCS--CEEETTTTEEESTTHHHHHHHHSC-STTTTCCCCCCE
T ss_pred CCCCCeeCCccccC--CcEecCCCCeeHHHHHHHHHhCcC-cCcCCChhhHhh
Confidence 46799999999865 357899999999999999999876 599999998653
No 20
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=2.5e-12 Score=99.53 Aligned_cols=55 Identities=27% Similarity=0.634 Sum_probs=46.7
Q ss_pred CCCCcccccccccccCCCc-eEEecCCCcccHHHHHHHHhcC--CCCCCCccccCCCC
Q 018233 295 CHGGETCAICLEDYQDGEK-LKVLSCKHEFHASCVDSWLTKW--GTFCPVCKHDMRNN 349 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~~~-vr~LpC~H~FH~~CI~~Wl~~~--~~~CPlCR~~i~~~ 349 (359)
..+..+|+||++.|...+. .+.++|||.||.+||..|+..+ ...||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred ccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 4556799999999998765 6788999999999999999985 34699999988654
No 21
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=2.9e-12 Score=94.10 Aligned_cols=53 Identities=21% Similarity=0.465 Sum_probs=43.7
Q ss_pred CCCCcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCCC
Q 018233 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNS 350 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~ 350 (359)
..+...|+||++.+.+. ..++|||.||..||..|+...+..||+||..+..++
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCSP---KQTECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64 (66)
T ss_dssp CCCCEECTTTCCEESSC---CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred CCcCCCCCCCChHhcCe---eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence 34567999999999876 347999999999999999654556999999987653
No 22
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.26 E-value=5.6e-13 Score=109.31 Aligned_cols=51 Identities=29% Similarity=0.644 Sum_probs=1.1
Q ss_pred CCcccccccccccCC-------------C--ceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCC
Q 018233 297 GGETCAICLEDYQDG-------------E--KLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRN 348 (359)
Q Consensus 297 ~~~~C~ICLe~f~~~-------------~--~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (359)
.++.|+||+++|+.. + .+..++|+|.||.+||++||+.+. +||+||+++..
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~-~CP~Cr~~~~~ 112 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ-VCPLDNREWEF 112 (117)
T ss_dssp CC-----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCC-cCCCCCCeeee
Confidence 467999999999762 2 233458999999999999999976 59999998643
No 23
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=4.8e-12 Score=94.54 Aligned_cols=53 Identities=28% Similarity=0.583 Sum_probs=43.5
Q ss_pred CCCCcccccccccccCCCceEEecCCCcccHHHHHHHHhc--CCCCCCCccccCCCCC
Q 018233 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTK--WGTFCPVCKHDMRNNS 350 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~--~~~~CPlCR~~i~~~~ 350 (359)
..+...|+||++.|.+. ..++|||.||.+||..|++. ....||+||..+..+.
T Consensus 17 ~~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 17 LQEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCCBCTTTCSBCSSE---EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred CccCCEeccCCcccCCe---EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 44577999999998854 56799999999999999973 3446999999987654
No 24
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.25 E-value=6.8e-12 Score=94.41 Aligned_cols=54 Identities=20% Similarity=0.504 Sum_probs=44.0
Q ss_pred CCCCcccccccccccCCCceEEec-CCCcccHHHHHHHHhcCC-CCCCCccccCCCCCC
Q 018233 295 CHGGETCAICLEDYQDGEKLKVLS-CKHEFHASCVDSWLTKWG-TFCPVCKHDMRNNSE 351 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~~~vr~Lp-C~H~FH~~CI~~Wl~~~~-~~CPlCR~~i~~~~~ 351 (359)
..+...|+||++.|.+. ..+| |||.||..||..|+..+. ..||+||..+...+.
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2yur_A 12 IPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDA 67 (74)
T ss_dssp SCGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTT
T ss_pred CCCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccc
Confidence 44567999999999875 5689 999999999999998753 369999998655443
No 25
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.22 E-value=1.5e-11 Score=94.15 Aligned_cols=57 Identities=25% Similarity=0.479 Sum_probs=46.5
Q ss_pred CCCCcccccccccccCCCceEEecCCCcccHHHHHHHHhcC-----CCCCCCccccCCCCCCCcc
Q 018233 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKW-----GTFCPVCKHDMRNNSESNE 354 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~-----~~~CPlCR~~i~~~~~~~~ 354 (359)
..+...|+||++.|... ..+||+|.||..||..|+... ...||+||..+.......+
T Consensus 16 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n 77 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEP---VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPN 77 (85)
T ss_dssp CCTTTSCTTTCSCCSSC---EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEEC
T ss_pred CccCCCCcCCChhhCcc---eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcC
Confidence 44567999999998776 478999999999999999883 4469999999887654443
No 26
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=8.9e-12 Score=95.25 Aligned_cols=49 Identities=24% Similarity=0.463 Sum_probs=41.9
Q ss_pred CCCCcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCC
Q 018233 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMR 347 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~ 347 (359)
......|+||++.|... .++||||.||..||..|+.... .||+||..+.
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~-~CP~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAFQNP---VVTKCRHYFCESCALEHFRATP-RCYICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBCCSE---EECTTSCEEEHHHHHHHHHHCS-BCSSSCCBCC
T ss_pred CCCCCCCcCCCchhcCe---eEccCCCHhHHHHHHHHHHCCC-cCCCcCcccc
Confidence 34567999999998664 4689999999999999998755 5999999986
No 27
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.22 E-value=8.6e-12 Score=91.29 Aligned_cols=55 Identities=27% Similarity=0.579 Sum_probs=44.7
Q ss_pred Ccccccccc-cccCCCc-eEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCCCCC
Q 018233 298 GETCAICLE-DYQDGEK-LKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNSES 352 (359)
Q Consensus 298 ~~~C~ICLe-~f~~~~~-vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~~~ 352 (359)
+..|+||++ .|..... ...++|||.||.+||+.|+......||+||..+..++..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~ 59 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFR 59 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCE
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccce
Confidence 568999999 7776643 356799999999999999877655699999998766543
No 28
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.21 E-value=1e-11 Score=94.11 Aligned_cols=55 Identities=20% Similarity=0.362 Sum_probs=45.5
Q ss_pred CCCCcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCCCCC
Q 018233 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNSES 352 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~~~ 352 (359)
..+...|+||++.|.+. ..++|||.||..||..|+......||+||..+......
T Consensus 5 ~~~~~~C~IC~~~~~~P---v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~ 59 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLT 59 (78)
T ss_dssp CSSSSSCTTTSCCCSSE---EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCE
T ss_pred CcccCCCCCccccccCC---EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCc
Confidence 44577999999999875 56799999999999999987444699999998765443
No 29
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.20 E-value=4e-12 Score=96.38 Aligned_cols=56 Identities=25% Similarity=0.474 Sum_probs=45.3
Q ss_pred CCCCcccccccccccCCCceEEecCCCcccHHHHHHHHhcC------CCCCCCccccCCCCCCCc
Q 018233 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKW------GTFCPVCKHDMRNNSESN 353 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~------~~~CPlCR~~i~~~~~~~ 353 (359)
..+...|+||++.|.+. +.+||||.||.+||..|+... ...||+||..+.......
T Consensus 9 ~~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~ 70 (79)
T 2egp_A 9 VQEEVTCPICLELLTEP---LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQA 70 (79)
T ss_dssp CCCCCEETTTTEECSSC---CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGT
T ss_pred cccCCCCcCCCcccCCe---eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCc
Confidence 45578999999999875 457999999999999999873 446999999987654433
No 30
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=2.2e-11 Score=93.18 Aligned_cols=57 Identities=28% Similarity=0.555 Sum_probs=45.9
Q ss_pred CCCCcccccccccccCCCceEEecCCCcccHHHHHHHHhc-----CCCCCCCccccCCCCCCCcc
Q 018233 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTK-----WGTFCPVCKHDMRNNSESNE 354 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~-----~~~~CPlCR~~i~~~~~~~~ 354 (359)
..+...|+||++.+.+. ..+||+|.||.+||..|+.. ....||+||..+.......+
T Consensus 16 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n 77 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQP---LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPN 77 (85)
T ss_dssp CCCCCCCTTTCSCCSSC---BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCS
T ss_pred ccCCCCCCCCCcccCCc---eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCcc
Confidence 44567999999999775 45799999999999999987 13469999999987654443
No 31
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.17 E-value=1.9e-11 Score=91.96 Aligned_cols=54 Identities=20% Similarity=0.512 Sum_probs=44.3
Q ss_pred CCCcccccccccccCCCceEEecCCCcccHHHHHHHHhcCC-CCCCCccccCCCCCC
Q 018233 296 HGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWG-TFCPVCKHDMRNNSE 351 (359)
Q Consensus 296 ~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~-~~CPlCR~~i~~~~~ 351 (359)
+..++|+||.+.+..++... .|+|.||..||..||+++. .+||+||++...+..
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~--~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~~ 67 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCE--TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIP 67 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECS--SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCCC
T ss_pred CCCCcCcchhhHcccCCccC--CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCCC
Confidence 35689999999999876444 8999999999999998862 459999998865543
No 32
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=3.7e-11 Score=87.23 Aligned_cols=45 Identities=27% Similarity=0.572 Sum_probs=37.9
Q ss_pred CCCCcccccccccccCCCceEEecCCCcccHHHHHHHHhc--CCCCCCCc
Q 018233 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTK--WGTFCPVC 342 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~--~~~~CPlC 342 (359)
..+...|+||++.|.+. ++++|||.||..||..|++. ....||+|
T Consensus 17 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSSC---EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCCe---EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 44577999999999865 56799999999999999985 34469998
No 33
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.15 E-value=1.3e-11 Score=98.43 Aligned_cols=52 Identities=27% Similarity=0.593 Sum_probs=43.1
Q ss_pred CCcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCCC
Q 018233 297 GGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNS 350 (359)
Q Consensus 297 ~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~ 350 (359)
+...|+||++.|... +..++|||.||..||..|+...+..||+||..+....
T Consensus 21 ~~~~C~IC~~~~~~p--~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (100)
T 3lrq_A 21 EVFRCFICMEKLRDA--RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRE 72 (100)
T ss_dssp HHTBCTTTCSBCSSE--EECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCccCCccccCc--cccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHH
Confidence 356999999999753 3338999999999999999997546999999986543
No 34
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.14 E-value=1.6e-11 Score=103.53 Aligned_cols=48 Identities=29% Similarity=0.879 Sum_probs=41.4
Q ss_pred CcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCC
Q 018233 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (359)
Q Consensus 298 ~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (359)
+..|+||++.|... ..+||||.||..||..|+..+. +||+||.++...
T Consensus 53 ~~~C~iC~~~~~~~---~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 53 ELQCIICSEYFIEA---VTLNCAHSFCSYCINEWMKRKI-ECPICRKDIKSK 100 (138)
T ss_dssp HSBCTTTCSBCSSE---EEETTSCEEEHHHHHHHTTTCS-BCTTTCCBCCCE
T ss_pred cCCCcccCcccCCc---eECCCCCCccHHHHHHHHHcCC-cCCCCCCcCCCC
Confidence 45799999998764 6789999999999999998866 599999998654
No 35
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.13 E-value=2e-11 Score=101.17 Aligned_cols=55 Identities=24% Similarity=0.660 Sum_probs=46.4
Q ss_pred CCCcccccccccccCC----CceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCCCC
Q 018233 296 HGGETCAICLEDYQDG----EKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNSE 351 (359)
Q Consensus 296 ~~~~~C~ICLe~f~~~----~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~~ 351 (359)
.+..+|+||++.|.+. +.++.++|||.||.+||++|++.+. +||+||..+.....
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~~~~l 63 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKINHKRY 63 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCS-BCTTTCCBCTTTCE
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCC-CCCCCCCcCccccc
Confidence 3467999999998764 5568899999999999999999876 59999999876543
No 36
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=3.9e-11 Score=85.36 Aligned_cols=45 Identities=29% Similarity=0.849 Sum_probs=37.3
Q ss_pred CCCCcccccccccccCCCceEEecCCCcccHHHHHHHHhc--CCCCCCCc
Q 018233 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTK--WGTFCPVC 342 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~--~~~~CPlC 342 (359)
..+...|+||++.+.+. +.++|+|.||.+||..|+.. .+..||+|
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKEP---VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSSC---CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccCcc---EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 44567999999999876 45899999999999999754 34469998
No 37
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.10 E-value=5.4e-11 Score=98.35 Aligned_cols=49 Identities=22% Similarity=0.443 Sum_probs=42.4
Q ss_pred CCcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCC
Q 018233 297 GGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRN 348 (359)
Q Consensus 297 ~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (359)
+...|+||++.|... ..+||||.||..||..|+..+...||+||..+..
T Consensus 51 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRP---ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcCc---EEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 346899999999865 5679999999999999998766569999999976
No 38
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.09 E-value=1e-10 Score=91.31 Aligned_cols=50 Identities=22% Similarity=0.541 Sum_probs=42.4
Q ss_pred CCCCcccccccccccCCCceEEec-CCCcccHHHHHHHHhcCC-CCCCCccccCC
Q 018233 295 CHGGETCAICLEDYQDGEKLKVLS-CKHEFHASCVDSWLTKWG-TFCPVCKHDMR 347 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~~~vr~Lp-C~H~FH~~CI~~Wl~~~~-~~CPlCR~~i~ 347 (359)
..+...|+||++.|.+. ..+| |||.||..||..|+.... ..||+||..+.
T Consensus 10 ~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 10 IPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CCcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 45677999999999875 6789 999999999999997643 46999999874
No 39
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.05 E-value=6.1e-11 Score=98.29 Aligned_cols=53 Identities=25% Similarity=0.703 Sum_probs=44.9
Q ss_pred CCcccccccccccCC----CceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCCC
Q 018233 297 GGETCAICLEDYQDG----EKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNS 350 (359)
Q Consensus 297 ~~~~C~ICLe~f~~~----~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~ 350 (359)
+...|+||++.|++. +..+.++|||.||..||++|++.+. +||+||.++..+.
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~~~~ 127 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKINHKR 127 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCS-BCTTTCCBCCGGG
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCC-CCCCCCCcCChhc
Confidence 467899999998763 4457889999999999999999877 5999999987653
No 40
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.05 E-value=6.1e-11 Score=94.05 Aligned_cols=49 Identities=22% Similarity=0.611 Sum_probs=41.0
Q ss_pred CcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCC
Q 018233 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (359)
Q Consensus 298 ~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (359)
...|+||++.|.+. +..++|||.||..||..|+..+. .||+||..+...
T Consensus 22 ~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~~-~CP~Cr~~~~~~ 70 (99)
T 2y43_A 22 LLRCGICFEYFNIA--MIIPQCSHNYCSLCIRKFLSYKT-QCPTCCVTVTEP 70 (99)
T ss_dssp HTBCTTTCSBCSSE--EECTTTCCEEEHHHHHHHHTTCC-BCTTTCCBCCGG
T ss_pred CCCcccCChhhCCc--CEECCCCCHhhHHHHHHHHHCCC-CCCCCCCcCChh
Confidence 56999999998864 33348999999999999999765 599999998764
No 41
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.02 E-value=1.2e-10 Score=94.15 Aligned_cols=53 Identities=30% Similarity=0.589 Sum_probs=43.5
Q ss_pred CcccccccccccCCCceEEecCCCcccHHHHHHHHhcCC--CCCCCccccCCCCCCCc
Q 018233 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWG--TFCPVCKHDMRNNSESN 353 (359)
Q Consensus 298 ~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~--~~CPlCR~~i~~~~~~~ 353 (359)
...|+||++.|... ..+||||.||..||..|+..+. ..||+||..+.......
T Consensus 21 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~ 75 (112)
T 1jm7_A 21 ILECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQE 75 (112)
T ss_dssp HTSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBC
T ss_pred CCCCcccChhhcCe---EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCc
Confidence 46899999999765 4579999999999999998753 35999999988765443
No 42
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.01 E-value=1.4e-10 Score=93.42 Aligned_cols=50 Identities=22% Similarity=0.694 Sum_probs=42.1
Q ss_pred CCcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCC
Q 018233 297 GGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (359)
Q Consensus 297 ~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (359)
+...|+||++.|.+. +..++|||.||..||..|+..+. .||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~~-~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDA--TTIIECLHSFCKTCIVRYLETSK-YCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBCSSE--EEETTTCCEEEHHHHHHHHTSCS-BCTTTCCBSCSS
T ss_pred CcCCCccCChHHhCc--CEeCCCCChhhHHHHHHHHHhCC-cCcCCCcccccc
Confidence 467999999998763 44449999999999999999865 599999998764
No 43
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.00 E-value=2.2e-10 Score=98.05 Aligned_cols=49 Identities=24% Similarity=0.514 Sum_probs=42.9
Q ss_pred CcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCC
Q 018233 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (359)
Q Consensus 298 ~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (359)
...|+||++.|.+. .++||||.||..||..|+......||+||..+...
T Consensus 78 ~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQP---VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhcCC---EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 46899999998765 56899999999999999998665699999999876
No 44
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.00 E-value=2.1e-10 Score=99.51 Aligned_cols=50 Identities=26% Similarity=0.652 Sum_probs=41.6
Q ss_pred CCcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCC
Q 018233 297 GGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRN 348 (359)
Q Consensus 297 ~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (359)
+...|+||++.|.+ .+..++|||.||..||..|+......||+||..+..
T Consensus 53 ~~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLKN--TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCSS--EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCcccChHhhC--cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 45699999999886 344459999999999999999855569999999854
No 45
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.00 E-value=3e-10 Score=86.50 Aligned_cols=56 Identities=16% Similarity=0.446 Sum_probs=43.7
Q ss_pred CCCCcccccccccccCCCceEEec--CCCcccHHHHHHHHhcCCCCCCCccccCCCCCC
Q 018233 295 CHGGETCAICLEDYQDGEKLKVLS--CKHEFHASCVDSWLTKWGTFCPVCKHDMRNNSE 351 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~~~vr~Lp--C~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~~ 351 (359)
.+++.+|+||++.+...+. +.+| |||.||..|+..++......||+||+.+.....
T Consensus 8 ~~~~~~CpICle~~~~~d~-~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDI-NFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTT-TCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred cccCCcCCccCccCccccc-cccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 3456799999999875443 3444 999999999999886655579999999876543
No 46
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.99 E-value=1.7e-10 Score=94.63 Aligned_cols=52 Identities=25% Similarity=0.515 Sum_probs=44.3
Q ss_pred CCCCcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCC
Q 018233 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (359)
..+...|+||++.+... ..++|||.||..||..|+......||+||..+...
T Consensus 15 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 15 LESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp CCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCcCChhhcCe---EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 44567999999998865 56899999999999999998764699999998764
No 47
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.97 E-value=9.2e-11 Score=95.74 Aligned_cols=51 Identities=29% Similarity=0.585 Sum_probs=42.8
Q ss_pred CCcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCCC
Q 018233 297 GGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNS 350 (359)
Q Consensus 297 ~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~ 350 (359)
+...|+||++.+.+. ..++|||.||..||..|+......||+||..+....
T Consensus 22 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 22 KSISCQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72 (116)
T ss_dssp HHTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCcHhcCc---EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence 356899999998764 458999999999999999985446999999987644
No 48
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.95 E-value=1.3e-10 Score=94.77 Aligned_cols=49 Identities=27% Similarity=0.645 Sum_probs=41.9
Q ss_pred CCcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCC
Q 018233 297 GGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRN 348 (359)
Q Consensus 297 ~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (359)
++..|+||++.|... ..|+|||.||..||..|+......||+||..+..
T Consensus 14 ~~~~C~iC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 14 SECQCGICMEILVEP---VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHBCTTTCSBCSSC---EECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCccCCcccCce---eEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 356899999998865 6779999999999999998755569999998853
No 49
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.91 E-value=2.5e-10 Score=81.18 Aligned_cols=50 Identities=22% Similarity=0.573 Sum_probs=40.7
Q ss_pred CCCcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCCCCC
Q 018233 296 HGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNSES 352 (359)
Q Consensus 296 ~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~~~ 352 (359)
.+...|+||++.|... +.|||||.||..||..| ...||+||+.+.....+
T Consensus 4 ~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~~~~~ 53 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP---KLLPCLHTLCSGCLEAS----GMQCPICQAPWPLGADT 53 (56)
T ss_dssp CCCSSCSSSCSSCBCC---SCSTTSCCSBTTTCSSS----SSSCSSCCSSSSCCSSC
T ss_pred ccCCCceEeCCccCCe---EEcCCCCcccHHHHccC----CCCCCcCCcEeecCCcC
Confidence 4567899999999876 67899999999999873 33599999998766443
No 50
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.88 E-value=1.4e-09 Score=86.73 Aligned_cols=54 Identities=9% Similarity=-0.065 Sum_probs=46.0
Q ss_pred CCCCcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCCCCC
Q 018233 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNSES 352 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~~~ 352 (359)
..+...|+||++-|++. .++||||.|++.||..|+..+. +||+||.++......
T Consensus 26 ~p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~-~cP~~~~~l~~~~L~ 79 (100)
T 2kre_A 26 APDEFRDPLMDTLMTDP---VRLPSGTIMDRSIILRHLLNSP-TDPFNRQTLTESMLE 79 (100)
T ss_dssp CSTTTBCTTTCSBCSSE---EEETTTEEEEHHHHHHHTTSCS-BCSSSCCBCCTTSSE
T ss_pred CcHhhCCcCccCcccCC---eECCCCCEEchHHHHHHHHcCC-CCCCCCCCCChhhce
Confidence 45577999999999987 6789999999999999998755 599999998765443
No 51
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.86 E-value=1.2e-09 Score=106.50 Aligned_cols=50 Identities=32% Similarity=0.781 Sum_probs=41.7
Q ss_pred CCcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCC
Q 018233 297 GGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (359)
Q Consensus 297 ~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (359)
....|+||++.+.. .+.+||||.||..|+..|+......||+||.++...
T Consensus 331 ~~~~C~ICle~~~~---pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 331 TFQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSSBCTTTSSSBCC---EEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCCccCcCCCC---eEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 35799999999855 478999999999999999984444699999988653
No 52
>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A*
Probab=98.85 E-value=1.5e-08 Score=100.37 Aligned_cols=92 Identities=24% Similarity=0.290 Sum_probs=68.1
Q ss_pred CCCeeEEEeeCCCCCCCCCCCCCCCCCCCCcceEEEEEcCCCChHHHHHHHHHcCCcEEEEecccCccccccccCCCCcc
Q 018233 117 SSGTCGALHVADPADACSPLSNPVASNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREKGSLVSMTASHEGV 196 (359)
Q Consensus 117 ~~~~~g~L~~~~p~~aC~~~~~~~~~~~~~~~~ivLV~RG~CsF~~K~~~Aq~aGA~avIi~n~~~~~~~~~m~~~~~~i 196 (359)
...+.|+|++..- | .+.+... ...+++||||+||+|+|.+|+++|+++||+||||||+.+.. ...+.++....
T Consensus 90 ~g~v~a~lv~~~~--G-~~~D~~~---~dv~GkIvlv~~g~~~~~~k~~~A~~~GA~gvIi~~~~~~~-~~g~~~~~~~~ 162 (421)
T 2ek8_A 90 NSDVTAELVYVGL--G-TTADVAG---KDLNGKIALIQRGNISFADKVRNAAKQGAKAVIIYNNTDGK-LNGTLGGSDAS 162 (421)
T ss_dssp CEEEEEEEEECTT--C-CTTTTTT---SCCTTSEEEEECCSSCHHHHHHHHHHTTCSEEEEECSSSSC-CCCBCSSCCTT
T ss_pred CCCcceEEEECCC--C-ChhhcCC---CCcCceEEEEeCCCCCHHHHHHHHHHCCCeEEEEEeCCCcc-cccccCCCCCC
Confidence 3467888877543 2 2212111 13578999999999999999999999999999999986432 22222333457
Q ss_pred eeeEEeechhhHHHHHHhh
Q 018233 197 KVHAIFVSLETGVYLKEHA 215 (359)
Q Consensus 197 ~Ip~v~i~~~~G~~L~~~~ 215 (359)
.||++.|+.++++.|++.+
T Consensus 163 ~IP~~~Is~~~a~~L~~~l 181 (421)
T 2ek8_A 163 FVAAVGITKQEGDALAANL 181 (421)
T ss_dssp CCEEEEECHHHHHHHHHHH
T ss_pred CccEEEeCHHHHHHHHHHh
Confidence 8999999999999999877
No 53
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.84 E-value=1.9e-09 Score=83.25 Aligned_cols=53 Identities=9% Similarity=-0.081 Sum_probs=45.2
Q ss_pred CCCCcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCCCC
Q 018233 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNSE 351 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~~ 351 (359)
..+...|+||++-|++. .+++|||.|++.||..|+..+. +||+||..+.....
T Consensus 11 ~p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~-~cP~~~~~l~~~~l 63 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDP---VRLPSGTVMDRSIILRHLLNSP-TDPFNRQMLTESML 63 (85)
T ss_dssp CCTTTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHCS-BCTTTCCBCCGGGC
T ss_pred CchheECcccCchhcCC---eECCCCCEECHHHHHHHHhcCC-CCCCCcCCCChHhc
Confidence 44577999999999987 6789999999999999999765 59999998875543
No 54
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.83 E-value=1.3e-09 Score=79.72 Aligned_cols=47 Identities=23% Similarity=0.537 Sum_probs=38.7
Q ss_pred CCcccccccccccCCCceEEe--cCCCc-ccHHHHHHHHhcCCCCCCCccccCC
Q 018233 297 GGETCAICLEDYQDGEKLKVL--SCKHE-FHASCVDSWLTKWGTFCPVCKHDMR 347 (359)
Q Consensus 297 ~~~~C~ICLe~f~~~~~vr~L--pC~H~-FH~~CI~~Wl~~~~~~CPlCR~~i~ 347 (359)
++.+|.||++...+. ..+ ||||. |+.+|+..|.+.+. .||+||+++.
T Consensus 7 ~~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~-~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNG---CIVHGKTGHLMACFTCAKKLKKRNK-PCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCE---EEEETTEEEEEECHHHHHHHHHTTC-CCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCE---EEECCCCCChhhHHHHHHHHHHcCC-cCCCcCcchh
Confidence 456999999985543 444 99999 89999999998766 5999999885
No 55
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.82 E-value=7.8e-10 Score=93.66 Aligned_cols=52 Identities=19% Similarity=0.388 Sum_probs=43.8
Q ss_pred CCCCcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCC
Q 018233 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (359)
.++...|+||++.+.+. .+++|||.||..||..|+......||+||.++...
T Consensus 28 l~~~~~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 79 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRP---FQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYE 79 (141)
T ss_dssp CCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCC
T ss_pred CCcCcCCCCCChhhcCc---EECCCCCccCHHHHHHHHhcCCCCCCCCCCccccc
Confidence 44567999999999876 56899999999999999987665699999987543
No 56
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.81 E-value=2.4e-09 Score=77.24 Aligned_cols=50 Identities=30% Similarity=0.655 Sum_probs=39.0
Q ss_pred CCCcccccccccccCCCceEEecCC--C---cccHHHHHHHHhcC-CCCCCCccccCCC
Q 018233 296 HGGETCAICLEDYQDGEKLKVLSCK--H---EFHASCVDSWLTKW-GTFCPVCKHDMRN 348 (359)
Q Consensus 296 ~~~~~C~ICLe~f~~~~~vr~LpC~--H---~FH~~CI~~Wl~~~-~~~CPlCR~~i~~ 348 (359)
++...|.||+++. ++.+ ++||. | .||.+||+.|+... +.+||+||+.+..
T Consensus 4 ~~~~~CrIC~~~~--~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 4 EDVPVCWICNEEL--GNER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETTTTEEC--SCCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCEeEEeecCC--CCce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 4577999999983 3444 68964 4 89999999999863 4569999988753
No 57
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.80 E-value=3.8e-09 Score=83.88 Aligned_cols=54 Identities=13% Similarity=-0.033 Sum_probs=45.9
Q ss_pred CCCCcccccccccccCCCceEEecCC-CcccHHHHHHHHhcCCCCCCCccccCCCCCCC
Q 018233 295 CHGGETCAICLEDYQDGEKLKVLSCK-HEFHASCVDSWLTKWGTFCPVCKHDMRNNSES 352 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~~~vr~LpC~-H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~~~ 352 (359)
..+...|+||++-|++. .+++|| |.|++.||..|+..+. +||+||.++......
T Consensus 19 ~p~~~~CpI~~~~m~dP---V~~~cG~htf~r~cI~~~l~~~~-~cP~~~~~l~~~~L~ 73 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCDP---VVLPSSRVTVDRSTIARHLLSDQ-TDPFNRSPLTMDQIR 73 (98)
T ss_dssp CCTTTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHTTTSC-BCTTTCSBCCTTTSE
T ss_pred CcHhcCCcCccccccCC---eECCCCCeEECHHHHHHHHHhCC-CCCCCCCCCChhhce
Confidence 34567999999999987 678999 9999999999999865 599999998765443
No 58
>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B}
Probab=98.79 E-value=2.1e-08 Score=100.22 Aligned_cols=106 Identities=8% Similarity=-0.028 Sum_probs=75.3
Q ss_pred cccccccCCCCeeEEEeeCCCCCCCCCCCCCCCCCCCCcceEEEEEcCCCC---------hHHH----HHHHHHcCCcEE
Q 018233 109 AKFAVDVNSSGTCGALHVADPADACSPLSNPVASNDADHINFVLIVRGQCI---------FEDK----IRNAQAAGYRAA 175 (359)
Q Consensus 109 A~FG~~~~~~~~~g~L~~~~p~~aC~~~~~~~~~~~~~~~~ivLV~RG~Cs---------F~~K----~~~Aq~aGA~av 175 (359)
..+++..+..+++|+|+.....+.|+... + ...+|+||||+||.|. |..| +.+|+++||+||
T Consensus 95 l~~s~~tp~~~vta~lV~v~~~~~~~~~~-~----~dvkGKIVlv~~~~~~~~~~~~y~~~~~kr~~~a~~A~~aGA~av 169 (444)
T 3iib_A 95 LGGSIATPAQGLSATIVRFDTLQDLQNAE-A----GSLNDKIAFIDAKTERHRDGKGYGQTASGRSRGAVAAAEKGAVGI 169 (444)
T ss_dssp CBTCCCCCTTCEEEEEEEESSHHHHHTSC-T----TTTTTCEEEECCCCCCCTTCHHHHHHHHHHHHHHHHHHHTTCSEE
T ss_pred ccCCCCCCCCCeEEEEEecCCHHHHhhcc-c----cccCccEEEEeCCCCCCcccccccchhhhhhhHHHHHHHCCCeEE
Confidence 34555556778999999876555554432 1 1247899999999995 7777 457999999999
Q ss_pred EEecccCccc---c-ccccCCCCcceeeEEeechhhHHHHHHhhccCC
Q 018233 176 IVYNDREKGS---L-VSMTASHEGVKVHAIFVSLETGVYLKEHARGET 219 (359)
Q Consensus 176 Ii~n~~~~~~---~-~~m~~~~~~i~Ip~v~i~~~~G~~L~~~~~~~~ 219 (359)
||+|+..+.. . ..+...+....||++.|+.++|+.|+++++.++
T Consensus 170 Ii~~~~~~~~~~~~tg~~~~~~~~~~IP~~~Is~~da~~L~~~l~~g~ 217 (444)
T 3iib_A 170 IIRSIGTDHDRMAHTGMMRYEEGVTAIPAAAISNPDADLINAMLKRDK 217 (444)
T ss_dssp EEECSCSCCSSCCCCCBCCCCTTSCCCCEEEECHHHHHHHHHHHTTTC
T ss_pred EEEccCCcccccccCCccccCCCCCCCCeEEecHHHHHHHHHHHhCCC
Confidence 9999754321 1 112112234689999999999999999876553
No 59
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.74 E-value=3.1e-09 Score=77.39 Aligned_cols=47 Identities=21% Similarity=0.534 Sum_probs=38.3
Q ss_pred CCcccccccccccCCCceEEe--cCCCc-ccHHHHHHHHhcCCCCCCCccccCC
Q 018233 297 GGETCAICLEDYQDGEKLKVL--SCKHE-FHASCVDSWLTKWGTFCPVCKHDMR 347 (359)
Q Consensus 297 ~~~~C~ICLe~f~~~~~vr~L--pC~H~-FH~~CI~~Wl~~~~~~CPlCR~~i~ 347 (359)
....|.||++...+. ..+ ||||. |+.+|+..|.+... .||+||++|.
T Consensus 6 ~~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~-~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDG---NIIHGRTGHLVTCFHCARRLKKAGA-SCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCE---EEEETTEEEEEECHHHHHHHHHTTC-BCTTTCCBCC
T ss_pred cCCCCcccCCcCCCe---EEEecCCCCHhHHHHHHHHHHHhCC-cCCCcCchhh
Confidence 457999999985443 344 99998 99999999987765 5999999885
No 60
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.72 E-value=2.3e-09 Score=87.63 Aligned_cols=49 Identities=27% Similarity=0.518 Sum_probs=40.7
Q ss_pred CCcccccccccccCCCceEEe-cCCCcccHHHHHHHHhcCCCCCCCccccCCCCCC
Q 018233 297 GGETCAICLEDYQDGEKLKVL-SCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNSE 351 (359)
Q Consensus 297 ~~~~C~ICLe~f~~~~~vr~L-pC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~~ 351 (359)
+...|+||++.|... ..+ +|||.||..||..|+. ..||+||..+.....
T Consensus 21 ~~~~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~ 70 (117)
T 1jm7_B 21 KLLRCSRCTNILREP---VCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDL 70 (117)
T ss_dssp HTTSCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSC
T ss_pred hCCCCCCCChHhhCc---cEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCccccc
Confidence 357999999999765 456 9999999999999988 359999999865433
No 61
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.69 E-value=7.2e-09 Score=96.33 Aligned_cols=54 Identities=13% Similarity=0.180 Sum_probs=45.7
Q ss_pred CCCCcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCCCC
Q 018233 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNSE 351 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~~ 351 (359)
......|+||++-|.+. .++||||.|++.||..|+..+..+||+||.++.....
T Consensus 205 ~~~~~~c~i~~~~~~dP---v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l 258 (281)
T 2c2l_A 205 IPDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQL 258 (281)
T ss_dssp CCSTTBCTTTCSBCSSE---EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGC
T ss_pred CCcccCCcCcCCHhcCC---eECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcC
Confidence 44567999999999887 6789999999999999999865459999999875543
No 62
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.67 E-value=5.3e-09 Score=78.52 Aligned_cols=43 Identities=21% Similarity=0.592 Sum_probs=36.5
Q ss_pred CcccccccccccCCCceEEecCCCc-ccHHHHHHHHhcCCCCCCCccccCCC
Q 018233 298 GETCAICLEDYQDGEKLKVLSCKHE-FHASCVDSWLTKWGTFCPVCKHDMRN 348 (359)
Q Consensus 298 ~~~C~ICLe~f~~~~~vr~LpC~H~-FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (359)
...|+||++.+.+ ...+||||. ||..|+..| . .||+||..+..
T Consensus 24 ~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~----~-~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRNIA---IVFVPCGHLVTCKQCAEAV----D-KCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSBCC---EEEETTCCBCCCHHHHTTC----S-BCTTTCCBCSE
T ss_pred CCCCCCCCCCCCC---EEEcCCCChhHHHHhhhcC----c-cCCCcCcCccC
Confidence 5699999998765 367899999 999999988 3 59999998864
No 63
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.65 E-value=4.4e-09 Score=100.08 Aligned_cols=55 Identities=25% Similarity=0.634 Sum_probs=42.5
Q ss_pred CCCCcccccccccccCCCce-----EEecCCCcccHHHHHHHHhcCC----------CCCCCccccCCCC
Q 018233 295 CHGGETCAICLEDYQDGEKL-----KVLSCKHEFHASCVDSWLTKWG----------TFCPVCKHDMRNN 349 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~~~v-----r~LpC~H~FH~~CI~~Wl~~~~----------~~CPlCR~~i~~~ 349 (359)
.+...+|+||++.+.++..+ .-.+|+|.||..||.+||+... ..||+||++|..+
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 34577999999999884333 2346999999999999998732 2499999988654
No 64
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.65 E-value=8.2e-09 Score=89.72 Aligned_cols=52 Identities=25% Similarity=0.515 Sum_probs=44.2
Q ss_pred CCCCcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCC
Q 018233 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (359)
..+...|+||++.|.+. .+++|||.|+..||..|+......||+||..+...
T Consensus 15 ~~~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 15 LESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp CCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCChhhcCc---EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 44567999999998875 56899999999999999987654699999998764
No 65
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.63 E-value=1.3e-08 Score=79.99 Aligned_cols=51 Identities=24% Similarity=0.592 Sum_probs=41.0
Q ss_pred CCCcccccccccccCCCceEEec-CCCcccHHHHHHHHhcC-----CCCCCC--cccc-CCCC
Q 018233 296 HGGETCAICLEDYQDGEKLKVLS-CKHEFHASCVDSWLTKW-----GTFCPV--CKHD-MRNN 349 (359)
Q Consensus 296 ~~~~~C~ICLe~f~~~~~vr~Lp-C~H~FH~~CI~~Wl~~~-----~~~CPl--CR~~-i~~~ 349 (359)
.....|+||++.|++. .+++ |||.|++.||..|+..+ ..+||+ |+.. +...
T Consensus 5 ~~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~ 64 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKS 64 (94)
T ss_dssp SSCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGG
T ss_pred CcEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHh
Confidence 3467999999999876 5675 99999999999999875 246999 9866 5443
No 66
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.57 E-value=2.3e-08 Score=87.69 Aligned_cols=54 Identities=13% Similarity=0.180 Sum_probs=45.4
Q ss_pred CCCCcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCCCC
Q 018233 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNSE 351 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~~ 351 (359)
..+...|+||++-|.+. .++||||.|++.||..|+..+..+||+||.++.....
T Consensus 103 ip~~f~CPI~~elm~DP---V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L 156 (179)
T 2f42_A 103 IPDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQL 156 (179)
T ss_dssp CCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred CcHhhcccCccccCCCC---eECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhC
Confidence 45677999999999976 6779999999999999998854469999998876543
No 67
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.56 E-value=4.4e-08 Score=72.33 Aligned_cols=47 Identities=21% Similarity=0.699 Sum_probs=37.5
Q ss_pred CCCCcccccccccccCCCceEEecCCCc-ccHHHHHHHHhcCCCCCCCccccCCCC
Q 018233 295 CHGGETCAICLEDYQDGEKLKVLSCKHE-FHASCVDSWLTKWGTFCPVCKHDMRNN 349 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~~~vr~LpC~H~-FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (359)
..+...|.||++.... +..+||+|. |+..|+.. .. .||+||..|...
T Consensus 12 ~~~~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~----~~-~CP~CR~~i~~~ 59 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVN---WVLLPCRHTCLCDGCVKY----FQ-QCPMCRQFVQES 59 (68)
T ss_dssp CCCSSCCSSSSSSCCC---CEETTTTBCCSCTTHHHH----CS-SCTTTCCCCCCE
T ss_pred CCCCCCCCCcCcCCCC---EEEECCCChhhhHHHHhc----CC-CCCCCCcchhce
Confidence 3456799999998544 578899999 99999983 23 599999998654
No 68
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.55 E-value=2.7e-08 Score=78.00 Aligned_cols=49 Identities=22% Similarity=0.670 Sum_probs=40.4
Q ss_pred CCcccccccccccCCCceEEecCCCcccHHHHHHHHhcC-------CCCCCC--cccc
Q 018233 297 GGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKW-------GTFCPV--CKHD 345 (359)
Q Consensus 297 ~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~-------~~~CPl--CR~~ 345 (359)
+..+|+||++++...+.++.++|+|.|+.+|+..++... ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 456899999999877666666899999999999998752 235999 9987
No 69
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50 E-value=3.7e-08 Score=74.00 Aligned_cols=44 Identities=20% Similarity=0.529 Sum_probs=35.7
Q ss_pred CcccccccccccCCCceEEecCCCc-ccHHHHHHHHhcCCCCCCCccccCCCC
Q 018233 298 GETCAICLEDYQDGEKLKVLSCKHE-FHASCVDSWLTKWGTFCPVCKHDMRNN 349 (359)
Q Consensus 298 ~~~C~ICLe~f~~~~~vr~LpC~H~-FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (359)
...|+||++.+.+. ..+||||. |+..|+.. .. .||+||..+...
T Consensus 25 ~~~C~IC~~~~~~~---~~~pCgH~~~C~~C~~~----~~-~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 25 EKLCKICMDRNIAI---VFVPCGHLVTCKQCAEA----VD-KCPMCYTVITFK 69 (75)
T ss_dssp HHSCSSSCSSCCCB---CCSSSCCCCBCHHHHHH----CS-BCTTTCCBCCCC
T ss_pred CCCCCcCCCCCCCE---EEecCCCHHHHHHHhhC----CC-CCccCCceecCc
Confidence 56899999997653 57899999 99999964 23 599999998664
No 70
>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ...
Probab=98.49 E-value=1.6e-07 Score=98.57 Aligned_cols=99 Identities=16% Similarity=0.077 Sum_probs=68.4
Q ss_pred CCCCeeEEEeeCCCCCCCCCCCCC---CCCCCCCcceEEEEEcCCCChHHHHHHHHHcCCcEEEEecccCcc--------
Q 018233 116 NSSGTCGALHVADPADACSPLSNP---VASNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREKG-------- 184 (359)
Q Consensus 116 ~~~~~~g~L~~~~p~~aC~~~~~~---~~~~~~~~~~ivLV~RG~CsF~~K~~~Aq~aGA~avIi~n~~~~~-------- 184 (359)
+.+.++|+||+++ .||.. +.. ........++||||+||+|+|.+|+++||++||+|||||||..+.
T Consensus 123 ~~G~v~g~lV~v~--~G~~~-Df~~L~~~~~~~v~GkIvlv~~G~~~~~~Kv~~A~~~GA~gviiy~dp~d~~~~g~~~y 199 (707)
T 3fed_A 123 AQGMPEGDLVYVN--YARTE-DFFKLEREMGINCTGKIVIARYGKIFRGNKVKNAMLAGAIGIILYSDPADYFAPEVQPY 199 (707)
T ss_dssp CCBCCEECEEECT--TCCHH-HHHHHHHTSCCCCTTCEEEEECCSSCHHHHHHHHHHTTCSEEEEECCHHHHCCTTCCBT
T ss_pred CCCceEEEEEEec--CCchh-hHHHHHhccCCCCCCeEEEEECCCCCHhHHHHHHHHCCCEEEEEEcCchhccccccccC
Confidence 4456899999884 36521 111 000123578999999999999999999999999999999973210
Q ss_pred -------------cccc-c--cCCC--------------------CcceeeEEeechhhHHHHHHhhcc
Q 018233 185 -------------SLVS-M--TASH--------------------EGVKVHAIFVSLETGVYLKEHARG 217 (359)
Q Consensus 185 -------------~~~~-m--~~~~--------------------~~i~Ip~v~i~~~~G~~L~~~~~~ 217 (359)
..+. + .+++ ....||++-|+..+|+.|++.+..
T Consensus 200 P~~~~~p~~~vqrGsv~~~~~~GDp~TPG~ps~~~~~r~~~~~~~~~p~IP~~pIS~~da~~Ll~~l~g 268 (707)
T 3fed_A 200 PKGWNLPGTAAQRGNVLNLNGAGDPLTPGYPAKEYTFRLDVEEGVGIPRIPVHPIGYNDAEILLRYLGG 268 (707)
T ss_dssp TTSSBCCTTCCCCCCCCCCTTCCSTTCTTSCCCTTCCCCCGGGCTTCCSSCEEEECHHHHHHHHHTBCB
T ss_pred CCCccCCCccccccceecccCCCCCCCCCCcccCCCcccChhhccCCCCCCeEecCHHHHHHHHHHhcC
Confidence 0000 0 0110 125899999999999999987653
No 71
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.33 E-value=1.2e-07 Score=72.11 Aligned_cols=43 Identities=26% Similarity=0.658 Sum_probs=35.7
Q ss_pred CcccccccccccCCCceEEecCCCc-ccHHHHHHHHhcCCCCCCCccccCCC
Q 018233 298 GETCAICLEDYQDGEKLKVLSCKHE-FHASCVDSWLTKWGTFCPVCKHDMRN 348 (359)
Q Consensus 298 ~~~C~ICLe~f~~~~~vr~LpC~H~-FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (359)
...|.||++.+.. ...+||||. |+.+|+..| . .||+||..+..
T Consensus 18 ~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~~----~-~CP~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEEIN---STFCPCGHTVCCESCAAQL----Q-SCPVCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSBCC---EEEETTCBCCBCHHHHTTC----S-BCTTTCCBCCE
T ss_pred CCEeEEeCcccCc---EEEECCCCHHHHHHHHHhc----C-cCCCCCchhhC
Confidence 4689999998654 478899999 999999876 2 59999998854
No 72
>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A
Probab=98.32 E-value=8e-07 Score=92.36 Aligned_cols=96 Identities=17% Similarity=0.169 Sum_probs=66.4
Q ss_pred CCCeeEEEeeCCCCCCCCCCCCCCCCCCCCcceEEEEEcCCCChHHHHHHHHHcCCcEEEEecccCcccccc--------
Q 018233 117 SSGTCGALHVADPADACSPLSNPVASNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREKGSLVS-------- 188 (359)
Q Consensus 117 ~~~~~g~L~~~~p~~aC~~~~~~~~~~~~~~~~ivLV~RG~CsF~~K~~~Aq~aGA~avIi~n~~~~~~~~~-------- 188 (359)
.+.+.|+||+.. .||.. +..... ...+|+||||+||+|+|..|+++|+++||+|||||++..+.....
T Consensus 105 ~g~v~g~lV~vg--~G~~~-D~~~l~-vdv~GkIvlv~~g~~~~~~K~~~A~~~GA~gvii~~~~~~~~~~~~~~~~~G~ 180 (640)
T 3kas_A 105 AATVTGKLVHAN--FGTKK-DFEDLY-TPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGH 180 (640)
T ss_dssp CEEEEECEEECT--TCCHH-HHHTCS-SCCTTSEEEEESCSSCHHHHHHHHHTTTCSEEEEECCTTTCCCSCTTCCCCEE
T ss_pred CCceEEEEEEec--CCChh-hHHHhh-cccCCcEEEEecCCCCHHHHHHHHHHCCCeEEEEEeccccccccccccccccc
Confidence 345788888774 35432 111100 235789999999999999999999999999999999754211100
Q ss_pred --c-cCC-------------------CCcceeeEEeechhhHHHHHHhhc
Q 018233 189 --M-TAS-------------------HEGVKVHAIFVSLETGVYLKEHAR 216 (359)
Q Consensus 189 --m-~~~-------------------~~~i~Ip~v~i~~~~G~~L~~~~~ 216 (359)
. .++ .....||++-|+.++++.|++.+.
T Consensus 181 ~~~~~Gdp~tpg~ps~~~~~~~~~~~~~~p~IP~~~Is~~~a~~Ll~~l~ 230 (640)
T 3kas_A 181 AHLGTGDPYTPGFPSFNHTQFPPSRSSGLPNIPVQTISRAAAEKLFGNME 230 (640)
T ss_dssp CCSSSSCSCCCSSCC---CCCCCCSSCCCCSSCEEECCHHHHHHHHTTEE
T ss_pred cccCCCCCCCCCcccccccccccccccCCCCCCEEecCHHHHHHHHHHcc
Confidence 0 000 012479999999999999998654
No 73
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.26 E-value=3.4e-07 Score=66.10 Aligned_cols=51 Identities=14% Similarity=0.190 Sum_probs=42.6
Q ss_pred CcccccccccccCCCceEEe-cCCCcccHHHHHHHHhcCCCCCCCccccCCCCCCC
Q 018233 298 GETCAICLEDYQDGEKLKVL-SCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNSES 352 (359)
Q Consensus 298 ~~~C~ICLe~f~~~~~vr~L-pC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~~~ 352 (359)
...|+||++.+++. .++ +|||+|.++||++|++.+.+ ||+++.++...+..
T Consensus 3 ~~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~~-cP~t~~~L~~~~Li 54 (61)
T 2bay_A 3 HMLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGN-DPITNEPLSIEEIV 54 (61)
T ss_dssp -CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSB-CTTTCCBCCGGGCE
T ss_pred eEEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCCC-CcCCcCCCChhhcE
Confidence 35899999999865 556 89999999999999998775 99999998765443
No 74
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.16 E-value=3.4e-07 Score=88.36 Aligned_cols=44 Identities=23% Similarity=0.682 Sum_probs=37.1
Q ss_pred CCcccccccccccCCCceEEecCCCc-ccHHHHHHHHhcCCCCCCCccccCCC
Q 018233 297 GGETCAICLEDYQDGEKLKVLSCKHE-FHASCVDSWLTKWGTFCPVCKHDMRN 348 (359)
Q Consensus 297 ~~~~C~ICLe~f~~~~~vr~LpC~H~-FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (359)
+...|+||++.+.. ...+||||. ||..|+..| . .||+||..+..
T Consensus 294 ~~~~C~IC~~~~~~---~v~lpCgH~~fC~~C~~~~----~-~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVS---VVFIPCGHLVVCQECAPSL----R-KCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCC---EEEETTCCEEECTTTGGGC----S-BCTTTCCBCCE
T ss_pred CCCCCCccCCcCCc---eEEcCCCChhHhHHHHhcC----C-cCCCCCCCccC
Confidence 45799999999765 367899999 999999987 3 59999998864
No 75
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.15 E-value=5.1e-07 Score=83.22 Aligned_cols=55 Identities=22% Similarity=0.427 Sum_probs=43.8
Q ss_pred CCCcccccccccccCCCceEEecCCCcccHHHHHHHHhcC-CCCCCC--ccccCCCCCCC
Q 018233 296 HGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKW-GTFCPV--CKHDMRNNSES 352 (359)
Q Consensus 296 ~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~-~~~CPl--CR~~i~~~~~~ 352 (359)
...-.|+||++.|++. |+.+.|||.|++.||..|+..+ ...||+ ||..+......
T Consensus 179 ~~el~CPIcl~~f~DP--Vts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~ 236 (267)
T 3htk_C 179 KIELTCPITCKPYEAP--LISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFV 236 (267)
T ss_dssp BCCSBCTTTSSBCSSE--EEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEE
T ss_pred ceeeECcCccCcccCC--eeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCC
Confidence 3456999999998665 5556899999999999999874 235999 99988655443
No 76
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.05 E-value=3.2e-06 Score=66.26 Aligned_cols=48 Identities=23% Similarity=0.439 Sum_probs=39.1
Q ss_pred ccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCC
Q 018233 300 TCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (359)
Q Consensus 300 ~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (359)
-|.+|--.+.. ..|.+||+|+|+.+|+..|.++....||.|+.+|..-
T Consensus 3 fC~~C~~Pi~i--ygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 3 FCDKCGLPIKV--YGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRI 50 (101)
T ss_dssp BCTTTCSBCSE--EEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEE
T ss_pred ecCccCCCeEE--EeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeee
Confidence 47777666544 5799999999999999999877666799999988654
No 77
>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*
Probab=97.95 E-value=8.2e-06 Score=85.08 Aligned_cols=88 Identities=9% Similarity=0.025 Sum_probs=67.0
Q ss_pred EEeeCCCCCCCCCCCCCCCCCCCCcceEEEEEcCCCChHHHHHHHHHcCCcEEEEecccCccccccccCCCCcceeeEEe
Q 018233 123 ALHVADPADACSPLSNPVASNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREKGSLVSMTASHEGVKVHAIF 202 (359)
Q Consensus 123 ~L~~~~p~~aC~~~~~~~~~~~~~~~~ivLV~RG~CsF~~K~~~Aq~aGA~avIi~n~~~~~~~~~m~~~~~~i~Ip~v~ 202 (359)
+|+++...+.|.+...+... ....++|+|++||.|+|.+|..+++++||.++|++|+.. .+ . .....+|+++
T Consensus 260 plv~~~~~~~C~~~~l~~~~-vdl~GkIvlc~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~--~~---~--~~~~~~P~~~ 331 (649)
T 3i6s_A 260 PVIYNKTLSDCSSEELLSQV-ENPENTIVICDDNGDFSDQMRIITRARLKAAIFISEDPG--VF---R--SATFPNPGVV 331 (649)
T ss_dssp EEECCTTTTTCCCHHHHTTS-SSGGGCEEEECCCSCHHHHHHHHHHHTCSEEEEECCCGG--GG---G--CCCCCSCEEE
T ss_pred eeEecccccccccccccccc-cccCCcEEEEeCCCccHHHHHHHHHhcCceEEEEecCcc--cc---c--cccCcCCEEE
Confidence 45666666789875322211 012789999999999999999999999999999999762 11 1 1234789999
Q ss_pred echhhHHHHHHhhccC
Q 018233 203 VSLETGVYLKEHARGE 218 (359)
Q Consensus 203 i~~~~G~~L~~~~~~~ 218 (359)
|+.++|+.|+++++..
T Consensus 332 v~~~~g~~i~~yi~s~ 347 (649)
T 3i6s_A 332 VNKKEGKQVINYVKNS 347 (649)
T ss_dssp ECHHHHHHHHHHHHTC
T ss_pred EcHHHHHHHHHHHhcC
Confidence 9999999999988654
No 78
>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A*
Probab=97.84 E-value=3.5e-05 Score=76.56 Aligned_cols=72 Identities=19% Similarity=0.220 Sum_probs=56.4
Q ss_pred CcceEEEEEcCCC-----ChHHHHHHHHHcCCcEEEEecccCccccc--cccCCCCcceeeEEeechhhHHHHHHhhcc
Q 018233 146 DHINFVLIVRGQC-----IFEDKIRNAQAAGYRAAIVYNDREKGSLV--SMTASHEGVKVHAIFVSLETGVYLKEHARG 217 (359)
Q Consensus 146 ~~~~ivLV~RG~C-----sF~~K~~~Aq~aGA~avIi~n~~~~~~~~--~m~~~~~~i~Ip~v~i~~~~G~~L~~~~~~ 217 (359)
.+++|+|++||+| +|.+|+.+++++||+++|||||.+..... ..........||+++|++++|+.|++++..
T Consensus 272 ~~gkivl~~rg~~~~~~~~~~~~~~~~~~aGa~gvii~~~~~~~g~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~ 350 (441)
T 1y9z_A 272 MANKICLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQ 350 (441)
T ss_dssp CTTEEEEEECCSCSSSSCTHHHHHHHHHHTTCSEEEEECCTTSCSCCCCEEECTTCCCCSCEEEECHHHHHHHHTTTTS
T ss_pred ccccEEEEeccccCcccccHHHHHHHHHhcCCeEEEEEeCCCccccccccccccccCccccEEEEeHHHHHHHHHHhcC
Confidence 4789999999987 89999999999999999999986432211 011122346899999999999999987643
No 79
>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A*
Probab=97.69 E-value=6.2e-05 Score=81.53 Aligned_cols=75 Identities=27% Similarity=0.403 Sum_probs=58.7
Q ss_pred CCCCCCCCCCCCCCCCcceEEEEEcCCCChHHHHHHHHHcCCcEEEEecccCccccccccCCCCcceeeEEeechhhHHH
Q 018233 131 DACSPLSNPVASNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREKGSLVSMTASHEGVKVHAIFVSLETGVY 210 (359)
Q Consensus 131 ~aC~~~~~~~~~~~~~~~~ivLV~RG~CsF~~K~~~Aq~aGA~avIi~n~~~~~~~~~m~~~~~~i~Ip~v~i~~~~G~~ 210 (359)
++|.+... ....++|||++||.|+|.+|+.+|+++||.++|+||+..+...+.+ .....||+++|++++|+.
T Consensus 269 ~g~~~~~~-----~~v~Gkivl~~rg~~~~~~k~~~~~~~Ga~gvi~~n~~~~~~~~~~---~~~~~iP~~~i~~~~g~~ 340 (926)
T 1xf1_A 269 RGTKEDDF-----KDVKGKIALIERGDIDFKDKIAKAKKAGAVGVLIYDNQDKGFPIEL---PNVDQMPAAFISRKDGLL 340 (926)
T ss_dssp TSCSTTTT-----TTCTTSEEEEECCSSCHHHHHHHHHHTTCSEEEEECSSTTCCCEEC---CCSTTCCEEEECHHHHHH
T ss_pred CCCCccch-----hhcCCeEEEEECCCCCHHHHHHHHHhCCCcEEEEEecCCCCccccc---CccccccEEEEeHHHHHH
Confidence 46764322 1357899999999999999999999999999999998654333322 123579999999999999
Q ss_pred HHH
Q 018233 211 LKE 213 (359)
Q Consensus 211 L~~ 213 (359)
|+.
T Consensus 341 l~~ 343 (926)
T 1xf1_A 341 LKD 343 (926)
T ss_dssp HHH
T ss_pred HHh
Confidence 885
No 80
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.61 E-value=2.8e-05 Score=71.13 Aligned_cols=51 Identities=22% Similarity=0.554 Sum_probs=41.4
Q ss_pred CCcccccccccccCCCceEEecCCCcccHHHHHHHHhcCC-CCCCCccccCCCC
Q 018233 297 GGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWG-TFCPVCKHDMRNN 349 (359)
Q Consensus 297 ~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~-~~CPlCR~~i~~~ 349 (359)
....|.||.+-...|..+. .|+|.||..|+..|++.+. ..||.|+...+..
T Consensus 179 ~i~~C~iC~~iv~~g~~C~--~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCE--TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp TCCBCTTTCSBCSSCEECS--SSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCCcCcchhhHHhCCcccC--ccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 3679999999999885443 3999999999999998753 4599999876554
No 81
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=93.81 E-value=0.055 Score=39.15 Aligned_cols=48 Identities=27% Similarity=0.558 Sum_probs=34.0
Q ss_pred CCCcccccccccccCCCceEEecCCCcccHHHHHHHHhcC---CCCCCCccccC
Q 018233 296 HGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKW---GTFCPVCKHDM 346 (359)
Q Consensus 296 ~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~---~~~CPlCR~~i 346 (359)
.....|.||.+. ++.+.--.|...||..|+++-|... .=.||.|+...
T Consensus 10 ~~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 10 APGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CTTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 345689999753 4433333488999999999887663 22599997653
No 82
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=92.56 E-value=0.072 Score=41.28 Aligned_cols=33 Identities=15% Similarity=0.493 Sum_probs=26.1
Q ss_pred CcccccccccccCCCceEEecCCCcccHHHHHH
Q 018233 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDS 330 (359)
Q Consensus 298 ~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~ 330 (359)
+..|.||++++.......-++|+|.|+..|+..
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~ 35 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 35 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHH
Confidence 468999998754443344489999999999998
No 83
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=92.54 E-value=0.091 Score=40.43 Aligned_cols=52 Identities=21% Similarity=0.547 Sum_probs=40.3
Q ss_pred CCCCcccccccccccCCCceEEecC-CCcccHHHHHHHHhcCCCCCCCccccCCCCCCC
Q 018233 295 CHGGETCAICLEDYQDGEKLKVLSC-KHEFHASCVDSWLTKWGTFCPVCKHDMRNNSES 352 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~~~vr~LpC-~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~~~ 352 (359)
.....-|-.|+-+.+. .+.| .|.++..|+..-|.... .||+|+++++.+...
T Consensus 25 ~~G~~nCKsCWf~~k~-----LV~C~dHYLCl~CLtlmL~~Sd-rCpIC~~pLPtkl~~ 77 (99)
T 2ko5_A 25 HLGPQFCKSCWFENKG-----LVECNNHYLCLNCLTLLLSVSN-RCPICKMPLPTKLRP 77 (99)
T ss_dssp CSCCCCCCSSCSCCSS-----EEECSSCEEEHHHHHHTCSSSS-EETTTTEECCCCSCT
T ss_pred ccCcccChhhccccCC-----eeeecchhhHHHHHHHHHhhcc-CCcccCCcCCcceec
Confidence 4556799999987442 3347 69999999999877766 599999999876544
No 84
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=90.63 E-value=0.37 Score=36.28 Aligned_cols=34 Identities=21% Similarity=0.628 Sum_probs=24.4
Q ss_pred CCCCCcccccccccccCCCceEEec---CCCcccHHHHHHH
Q 018233 294 QCHGGETCAICLEDYQDGEKLKVLS---CKHEFHASCVDSW 331 (359)
Q Consensus 294 ~~~~~~~C~ICLe~f~~~~~vr~Lp---C~H~FH~~CI~~W 331 (359)
....++.|.||- .+..++ .+| |+-+||..||.+-
T Consensus 11 ~~~~D~~C~VC~-~~t~~~---l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 11 PVVNDEMCDVCE-VWTAES---LFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCCSCCCTTTC-CCCSSC---CSSCSSSSSCCCHHHHHHH
T ss_pred CCCCCcccCccc-cccccc---eeccccccccccHhhcccc
Confidence 345688999996 233343 345 7899999999985
No 85
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=85.90 E-value=0.24 Score=36.31 Aligned_cols=53 Identities=19% Similarity=0.421 Sum_probs=34.1
Q ss_pred CCCcccccccccccCCCceEEecCCCcccHHHHHHHHhc---CCCCCCCccccCCC
Q 018233 296 HGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTK---WGTFCPVCKHDMRN 348 (359)
Q Consensus 296 ~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~---~~~~CPlCR~~i~~ 348 (359)
.+...|.||-.....+..|.-=-|..-||..|+..-... ..-.||.|+..+..
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK 71 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence 345679999887543222222247889999999754432 23469999876543
No 86
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Probab=85.39 E-value=1.1 Score=46.19 Aligned_cols=60 Identities=5% Similarity=-0.082 Sum_probs=47.7
Q ss_pred CcceEEEEEcCCCChHHHHHHHHHcCCcEEEEecccCccccccccCCCCcceeeEEeechhhHHHHHHhhc
Q 018233 146 DHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREKGSLVSMTASHEGVKVHAIFVSLETGVYLKEHAR 216 (359)
Q Consensus 146 ~~~~ivLV~RG~CsF~~K~~~Aq~aGA~avIi~n~~~~~~~~~m~~~~~~i~Ip~v~i~~~~G~~L~~~~~ 216 (359)
..++|+|.+| .|..|..+++.+||.++|++++..+. .....+|.+.++..+|..++.+..
T Consensus 280 v~gkivl~~~---~~~~~~~~~~~~Ga~gvi~~~~~~~~--------~~~~~lP~~~v~~~~g~~i~~~~~ 339 (621)
T 3vta_A 280 LKGKIVVCEA---SFGPHEFFKSLDGAAGVLMTSNTRDY--------ADSYPLPSSVLDPNDLLATLRYIY 339 (621)
T ss_dssp TTTSEEECSS---CCCHHHHHHHHTTCSEEEEECSCCSS--------CCCCSSSEEEECHHHHHHHHHHHH
T ss_pred ccceEEEEec---CCChhHHhhhhcceeEEEEEecCCCc--------ccccccceEEECHHHHHHHHHHHh
Confidence 4689999865 46789999999999999999975431 123468999999999999998654
No 87
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=85.36 E-value=0.22 Score=39.42 Aligned_cols=49 Identities=29% Similarity=0.601 Sum_probs=32.7
Q ss_pred CCCCcccccccccccCCCceEEecCCCcccHHHHHHHHhc---CCCCCCCcc
Q 018233 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTK---WGTFCPVCK 343 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~---~~~~CPlCR 343 (359)
..+++.|.||.+.-+..+.+.--.|+..||..|++..+.. ..-.||.|+
T Consensus 4 ~~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 3467899999987433333444468999999999876542 222466654
No 88
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=83.84 E-value=0.58 Score=32.95 Aligned_cols=47 Identities=26% Similarity=0.638 Sum_probs=31.8
Q ss_pred CCCCcccccccccccCCCceEEecCCCcccHHHHHHHHhc---CCCCCCCccc
Q 018233 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTK---WGTFCPVCKH 344 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~---~~~~CPlCR~ 344 (359)
...+..|.||.+. ++.+.--.|...||..|+.+=+.. ..-.||.|+.
T Consensus 8 ~~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 8 TDHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SCCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 3457799999874 443333347889999999875433 1235999965
No 89
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=83.75 E-value=0.86 Score=36.10 Aligned_cols=47 Identities=23% Similarity=0.445 Sum_probs=30.0
Q ss_pred CCcccccccccc------cCCCceEEecCCCcccHHHHHH------HHhcCCCCCCCcc
Q 018233 297 GGETCAICLEDY------QDGEKLKVLSCKHEFHASCVDS------WLTKWGTFCPVCK 343 (359)
Q Consensus 297 ~~~~C~ICLe~f------~~~~~vr~LpC~H~FH~~CI~~------Wl~~~~~~CPlCR 343 (359)
....|.+|+..- +.++.+.--.|+..||..||.. -+....-.||.|+
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 467899999763 2233444445899999999953 2333333477774
No 90
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=82.09 E-value=0.61 Score=35.57 Aligned_cols=51 Identities=20% Similarity=0.391 Sum_probs=33.9
Q ss_pred CCCCcccccccccccCCCceEEecCCCcccHHHHHHHHhcC---CCCCCCccccCCC
Q 018233 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKW---GTFCPVCKHDMRN 348 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~---~~~CPlCR~~i~~ 348 (359)
....+.|.+|.+. ++.+.--.|.-.||..|+++=+... .-.||.|+..-..
T Consensus 22 d~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~~~ 75 (88)
T 1fp0_A 22 DDSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDL 75 (88)
T ss_dssp SSSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCSS
T ss_pred CCCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCCCcc
Confidence 4457799999975 4433333477799999998755431 2259999865433
No 91
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=80.96 E-value=0.43 Score=41.47 Aligned_cols=49 Identities=22% Similarity=0.547 Sum_probs=33.4
Q ss_pred CcccccccccccCCCc---e-EEecCCCcccHHHHHH------HHh----cCCCCCCCccccC
Q 018233 298 GETCAICLEDYQDGEK---L-KVLSCKHEFHASCVDS------WLT----KWGTFCPVCKHDM 346 (359)
Q Consensus 298 ~~~C~ICLe~f~~~~~---v-r~LpC~H~FH~~CI~~------Wl~----~~~~~CPlCR~~i 346 (359)
+..|+||...|.+++. . .---|.+-||.+|+.- =+. .....||.|+..-
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 4579999999998862 2 2224889999999632 111 1145699998754
No 92
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=80.62 E-value=0.4 Score=33.95 Aligned_cols=50 Identities=26% Similarity=0.476 Sum_probs=33.3
Q ss_pred CCCcccccccccccCCCc-eEEecCCCcccHHHHHHHHh----cCCCCCCCcccc
Q 018233 296 HGGETCAICLEDYQDGEK-LKVLSCKHEFHASCVDSWLT----KWGTFCPVCKHD 345 (359)
Q Consensus 296 ~~~~~C~ICLe~f~~~~~-vr~LpC~H~FH~~CI~~Wl~----~~~~~CPlCR~~ 345 (359)
.+...|+||...+.++.. |.--.|..-||..|+.--.. .....||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 456789999998865432 33334888999999853221 134569999753
No 93
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.46 E-value=0.19 Score=34.76 Aligned_cols=47 Identities=26% Similarity=0.646 Sum_probs=31.3
Q ss_pred CCCCcccccccccccCCCceEEecCCCcccHHHHHHHHhcC---CCCCCCccc
Q 018233 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKW---GTFCPVCKH 344 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~---~~~CPlCR~ 344 (359)
...++.|.||-+. ++.+.--.|...||..|+.+=+... .-.||.|+.
T Consensus 6 ~~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 4467799999875 4433333488899999998644331 224888854
No 94
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=78.37 E-value=0.82 Score=30.70 Aligned_cols=45 Identities=24% Similarity=0.594 Sum_probs=28.8
Q ss_pred ccccccccccCCCceEEecCCCcccHHHHHHHHhcC---CCCCCCccc
Q 018233 300 TCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKW---GTFCPVCKH 344 (359)
Q Consensus 300 ~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~---~~~CPlCR~ 344 (359)
.|.||...-..++.+.--.|...||..|+++=+... .-.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 588898764444333333488899999997633321 225999964
No 95
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=77.68 E-value=2 Score=35.67 Aligned_cols=47 Identities=23% Similarity=0.467 Sum_probs=33.0
Q ss_pred CCCCcccccccccccCCCceEEecCCCcccHHHHHHHHh--------c--CCCCCCCccc
Q 018233 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLT--------K--WGTFCPVCKH 344 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~--------~--~~~~CPlCR~ 344 (359)
...++.|.||-+- |+.+--=.|-..||..||++=+. . ..=.||+|+.
T Consensus 60 Dg~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 4457899999976 55333335888999999997653 1 1225999974
No 96
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=77.61 E-value=0.46 Score=41.03 Aligned_cols=47 Identities=32% Similarity=0.631 Sum_probs=32.5
Q ss_pred CCcccccccccccCCCceEEecCCCcccHHHHHHHHhcC---CCCCCCccccC
Q 018233 297 GGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKW---GTFCPVCKHDM 346 (359)
Q Consensus 297 ~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~---~~~CPlCR~~i 346 (359)
.++.|.+|-+. |+.+.-=.|...||..|+.+-+... .-.||.|+..-
T Consensus 3 ~~~~C~~C~~~---g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG---GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC---SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC---CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 46789999855 5533333478899999998765542 23599998654
No 97
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=77.16 E-value=0.38 Score=42.44 Aligned_cols=49 Identities=24% Similarity=0.528 Sum_probs=32.4
Q ss_pred CCCCcccccccccccCCCceEEecCCCcccHHHHHHHHhcC---CCCCCCccccC
Q 018233 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKW---GTFCPVCKHDM 346 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~---~~~CPlCR~~i 346 (359)
...++.|.+|-.. |+.+.-=.|...||..|+.+-+... .-.||.|+..-
T Consensus 4 d~~~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 4 DPNEDWCAVCQNG---GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp CSSCSSBTTTCCC---EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCC---CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 3457789999854 4322222378899999998765542 22599998643
No 98
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=77.10 E-value=0.31 Score=34.72 Aligned_cols=52 Identities=21% Similarity=0.529 Sum_probs=33.4
Q ss_pred CCCcccccccccccC--CCceEEecCCCcccHHHHHHHHhc------CCCCCCCccccCC
Q 018233 296 HGGETCAICLEDYQD--GEKLKVLSCKHEFHASCVDSWLTK------WGTFCPVCKHDMR 347 (359)
Q Consensus 296 ~~~~~C~ICLe~f~~--~~~vr~LpC~H~FH~~CI~~Wl~~------~~~~CPlCR~~i~ 347 (359)
.++..|.||...... ++.+.--.|.-.||..|+.+=+.. ..=.||.|+....
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~ 63 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATT 63 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTS
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCccc
Confidence 457899999987543 222222248889999998864321 2235999976543
No 99
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=76.75 E-value=0.54 Score=33.12 Aligned_cols=48 Identities=29% Similarity=0.640 Sum_probs=31.4
Q ss_pred CCCCcccccccccccCCCceEEecCCCcccHHHHHHHHhcC---CCCCCCcccc
Q 018233 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKW---GTFCPVCKHD 345 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~---~~~CPlCR~~ 345 (359)
...+..|.||-+. ++.+.--.|...||..|+.+=+... .=.||.|+..
T Consensus 6 d~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 6 DHHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp CSSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred cCCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 3457789999863 4333222478899999998644331 2259999754
No 100
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=74.46 E-value=1.3 Score=32.01 Aligned_cols=42 Identities=21% Similarity=0.479 Sum_probs=33.3
Q ss_pred CCcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCC
Q 018233 297 GGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (359)
Q Consensus 297 ~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (359)
....|+.|-+.+..++.+. .-+..||.+|+ .|..|+.+|...
T Consensus 8 ~~~~C~~C~~~I~~~~~v~--a~~~~~H~~CF---------~C~~C~~~L~~~ 49 (76)
T 2cu8_A 8 MASKCPKCDKTVYFAEKVS--SLGKDWHKFCL---------KCERCSKTLTPG 49 (76)
T ss_dssp CCCBCTTTCCBCCTTTEEE--ETTEEEETTTC---------BCSSSCCBCCTT
T ss_pred CCCCCcCCCCEeECCeEEE--ECCeEeeCCCC---------CCCCCCCccCCC
Confidence 3568999999998777554 45889999995 499999888754
No 101
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=73.74 E-value=3.4 Score=30.40 Aligned_cols=51 Identities=24% Similarity=0.395 Sum_probs=31.5
Q ss_pred CCcccccccccccCCC-ceEEecCCCcccHHHHHHHHh----cCCCCCCCccccCCC
Q 018233 297 GGETCAICLEDYQDGE-KLKVLSCKHEFHASCVDSWLT----KWGTFCPVCKHDMRN 348 (359)
Q Consensus 297 ~~~~C~ICLe~f~~~~-~vr~LpC~H~FH~~CI~~Wl~----~~~~~CPlCR~~i~~ 348 (359)
....| ||-..+..+. .|.---|..-||..|+.-=-. .....||.|+..-..
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~ 66 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFGP 66 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSCS
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccCC
Confidence 34566 9998875333 233334888999999852111 134469999876433
No 102
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=71.88 E-value=1.1 Score=32.31 Aligned_cols=11 Identities=18% Similarity=0.555 Sum_probs=4.9
Q ss_pred ccccccccccC
Q 018233 300 TCAICLEDYQD 310 (359)
Q Consensus 300 ~C~ICLe~f~~ 310 (359)
.|..|-..+..
T Consensus 29 ~C~~C~~~L~~ 39 (76)
T 1iml_A 29 KCEKCGKTLTS 39 (76)
T ss_dssp BCTTTCCBCCT
T ss_pred CccccCccCCC
Confidence 44444444433
No 103
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=71.27 E-value=1 Score=35.84 Aligned_cols=33 Identities=21% Similarity=0.453 Sum_probs=23.1
Q ss_pred cccccccccccC-------CCceEEecCCCcccHHHHHHH
Q 018233 299 ETCAICLEDYQD-------GEKLKVLSCKHEFHASCVDSW 331 (359)
Q Consensus 299 ~~C~ICLe~f~~-------~~~vr~LpC~H~FH~~CI~~W 331 (359)
+.|.||+..-.. ++.+.-..|+..||..|+...
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 579999976421 233444458999999999754
No 104
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=70.92 E-value=0.83 Score=33.84 Aligned_cols=46 Identities=26% Similarity=0.571 Sum_probs=29.2
Q ss_pred cccccccccccCCCceEEecCCCcccHHHHHHHHhc---C-CCCCCCccc
Q 018233 299 ETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTK---W-GTFCPVCKH 344 (359)
Q Consensus 299 ~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~---~-~~~CPlCR~ 344 (359)
..|.||...-..++.+.-=.|...||..|+++=|.. . .=.||.|+.
T Consensus 27 c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 488999875333432322248899999999854433 1 225999965
No 105
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=70.30 E-value=0.29 Score=34.32 Aligned_cols=48 Identities=27% Similarity=0.662 Sum_probs=32.4
Q ss_pred CCcccccccccccCCCceEEecCCCcccHHHHHHHHhcC---CCCCCCccccCC
Q 018233 297 GGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKW---GTFCPVCKHDMR 347 (359)
Q Consensus 297 ~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~---~~~CPlCR~~i~ 347 (359)
.++.|.||... ++.+.--.|...||..|+.+=+... .-.||.|+....
T Consensus 4 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML 54 (60)
T ss_dssp CCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHH
T ss_pred CCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhh
Confidence 46799999874 4433333488899999998644331 225999976543
No 106
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=70.25 E-value=2.5 Score=45.52 Aligned_cols=54 Identities=9% Similarity=0.049 Sum_probs=44.8
Q ss_pred CCCCcccccccccccCCCceEEecCC-CcccHHHHHHHHhcCCCCCCCccccCCCCCCC
Q 018233 295 CHGGETCAICLEDYQDGEKLKVLSCK-HEFHASCVDSWLTKWGTFCPVCKHDMRNNSES 352 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~~~vr~LpC~-H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~~~ 352 (359)
..+.-.|+|-++-+++. .++|-| |.|-+.+|..||..+. +||+=|.++......
T Consensus 888 iP~~F~cPIs~~lM~DP---VilpsG~~TydR~~I~~wl~~~~-tdP~Tr~~L~~~~li 942 (968)
T 3m62_A 888 VPDEFLDPLMYTIMKDP---VILPASKMNIDRSTIKAHLLSDS-TDPFNRMPLKLEDVT 942 (968)
T ss_dssp SCGGGBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCC-BCTTTCCBCCGGGCE
T ss_pred CcHHhCCcchhhHHhCC---eEcCCCCEEECHHHHHHHHhcCC-CCCCCCCCCCccccc
Confidence 45567899999999987 788997 5899999999999866 599999988765433
No 107
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=69.94 E-value=2.5 Score=30.96 Aligned_cols=41 Identities=29% Similarity=0.677 Sum_probs=32.5
Q ss_pred CCcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCC
Q 018233 297 GGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRN 348 (359)
Q Consensus 297 ~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (359)
....|+-|-+.+..++.+.. -+..||.+|+ .|-.|+..|..
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a--~~~~wH~~CF---------~C~~C~~~L~~ 54 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA--LDKQWHVSCF---------KCQTCSVILTG 54 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE--TTEEECTTTC---------BCSSSCCBCSS
T ss_pred CCCCCcCcCCeeCCCeEEEE--CCcccccccC---------CcCcCCCCcCC
Confidence 45689999999987776554 4789999995 59999888863
No 108
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=67.59 E-value=2.2 Score=31.16 Aligned_cols=48 Identities=25% Similarity=0.443 Sum_probs=30.2
Q ss_pred CcccccccccccCCCceEEecCCCcccHHHHHHH------H--hcCCCCCCCccccC
Q 018233 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSW------L--TKWGTFCPVCKHDM 346 (359)
Q Consensus 298 ~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~W------l--~~~~~~CPlCR~~i 346 (359)
...| ||-..+..+.-|.---|..-||..|+.-- + ......||.|+..-
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 4466 89888764433333348889999998421 1 12345699997643
No 109
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=67.25 E-value=4.2 Score=28.93 Aligned_cols=35 Identities=26% Similarity=0.573 Sum_probs=24.1
Q ss_pred CCCCcccccccccccCCCceEEe--cCCCcccHHHHH
Q 018233 295 CHGGETCAICLEDYQDGEKLKVL--SCKHEFHASCVD 329 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~~~vr~L--pC~H~FH~~CI~ 329 (359)
......|.+|...+..++....- .|.--||..|+.
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 34567899999998776544333 488899999974
No 110
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=67.08 E-value=0.91 Score=35.66 Aligned_cols=51 Identities=22% Similarity=0.432 Sum_probs=33.3
Q ss_pred CcccccccccccCCCceEEe--cCCCcccHHHHHHH------H---hcCCCCCCCccccCCC
Q 018233 298 GETCAICLEDYQDGEKLKVL--SCKHEFHASCVDSW------L---TKWGTFCPVCKHDMRN 348 (359)
Q Consensus 298 ~~~C~ICLe~f~~~~~vr~L--pC~H~FH~~CI~~W------l---~~~~~~CPlCR~~i~~ 348 (359)
...|.||...+.+.+....- .|..-||.+|+.-= + ......||.|+..-..
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~~ 64 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKEG 64 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCCC
Confidence 45799999998766543333 37889999997411 1 0123459999875443
No 111
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=67.00 E-value=4.5 Score=27.23 Aligned_cols=44 Identities=20% Similarity=0.351 Sum_probs=27.8
Q ss_pred ccccccccccCCCceEE-e-cCCCcccHHHHHHH---HhcCCCCCCCcc
Q 018233 300 TCAICLEDYQDGEKLKV-L-SCKHEFHASCVDSW---LTKWGTFCPVCK 343 (359)
Q Consensus 300 ~C~ICLe~f~~~~~vr~-L-pC~H~FH~~CI~~W---l~~~~~~CPlCR 343 (359)
.|.||...+.+++.... - .|..-||..|+.-- .......||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 57889888865543322 2 47778999997421 122455699985
No 112
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=66.56 E-value=0.94 Score=39.39 Aligned_cols=46 Identities=22% Similarity=0.463 Sum_probs=31.2
Q ss_pred CcccccccccccCCCceEEecCCCcccHHHHHHHHhc---CCCCCCCccccC
Q 018233 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTK---WGTFCPVCKHDM 346 (359)
Q Consensus 298 ~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~---~~~~CPlCR~~i 346 (359)
++.|.+|.+. |+.+.--.|...||..|+.+=+.. ..-.||.|+..-
T Consensus 2 ~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 2 ATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCCBTTTCCC---SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CCcCccCCCC---CceeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 5789999865 553333347789999999764433 122599998653
No 113
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=65.63 E-value=3.2 Score=30.50 Aligned_cols=43 Identities=33% Similarity=0.616 Sum_probs=33.0
Q ss_pred CCcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCCC
Q 018233 297 GGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNS 350 (359)
Q Consensus 297 ~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~ 350 (359)
....|+-|-+.+...+.+. .-+..||.+|+ .|-.|+..|....
T Consensus 14 ~~~~C~~C~~~I~~~e~v~--a~~~~wH~~CF---------~C~~C~~~L~~~~ 56 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLC--VNGHFFHRSCF---------RCHTCEATLWPGG 56 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCC--BTTBCCBTTTC---------BCSSSCCBCCTTS
T ss_pred CCCCCcccCCCcccceEEE--ECCCeeCCCcC---------EEcCCCCCcCCCc
Confidence 4578999999987776554 35889999995 4888888776554
No 114
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=65.27 E-value=6 Score=32.19 Aligned_cols=47 Identities=26% Similarity=0.474 Sum_probs=30.7
Q ss_pred CCCCcccccccccccCCCceEEecCCCcccHHHHHHHH------hc----CCCCCCCccc
Q 018233 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWL------TK----WGTFCPVCKH 344 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl------~~----~~~~CPlCR~ 344 (359)
...++.|.||-+- |+.+--=.|-..||.+||.+=+ +. ..=.|++|+.
T Consensus 54 Dg~~~~C~vC~dG---G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 54 DGMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp TSCBSSCTTTCCC---SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCcCeecCCC---CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 3456789999975 4322222378899999999752 11 1225999964
No 115
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=64.60 E-value=1.1 Score=32.42 Aligned_cols=45 Identities=27% Similarity=0.674 Sum_probs=26.8
Q ss_pred ccccccccccCCCceEEecCCCcccHHHHHHHHhcC----CCCCCCccc
Q 018233 300 TCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKW----GTFCPVCKH 344 (359)
Q Consensus 300 ~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~----~~~CPlCR~ 344 (359)
.|.||...-..++.+.-=.|...||..|+++=|... .=.||.|+.
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 567777542223222111378899999998544331 225999974
No 116
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=62.90 E-value=1.2 Score=31.73 Aligned_cols=47 Identities=26% Similarity=0.599 Sum_probs=31.6
Q ss_pred CCCcccccccccccCCCceEEecCCCcccHHHHHHHHhc---CCCCCCCcccc
Q 018233 296 HGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTK---WGTFCPVCKHD 345 (359)
Q Consensus 296 ~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~---~~~~CPlCR~~ 345 (359)
..++.|.||-+. ++.+.--.|...||..|+.+=+.. ..=.||.|...
T Consensus 6 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 6 KNEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp SCCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 357799999864 443333347889999999864433 12259999653
No 117
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.44 E-value=0.84 Score=34.97 Aligned_cols=51 Identities=22% Similarity=0.384 Sum_probs=32.5
Q ss_pred CCCCcccccccccccCCCceEEecCCCcccHHHHHHHHhc---CCCCCCCcccc
Q 018233 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTK---WGTFCPVCKHD 345 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~---~~~~CPlCR~~ 345 (359)
..+...|.||...-..++.|.-=-|...||..|+.+=|.. ..=.||.|+..
T Consensus 13 ~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 13 FIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred ccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 3456689999987443332322248889999999853332 12259999754
No 118
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.10 E-value=5.4 Score=28.05 Aligned_cols=42 Identities=17% Similarity=0.491 Sum_probs=30.9
Q ss_pred CcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCC
Q 018233 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (359)
Q Consensus 298 ~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (359)
...|+.|-+.+...+.+. ..-+..||.+|+ .|-.|+.+|...
T Consensus 5 ~~~C~~C~~~I~~~~~~~-~a~~~~~H~~CF---------~C~~C~~~L~~~ 46 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKM-EYKGSSWHETCF---------ICHRCQQPIGTK 46 (72)
T ss_dssp CCCBSSSCCCCCSSSCEE-EETTEEEETTTT---------CCSSSCCCCCSS
T ss_pred CCCCccCCCcccCCceEE-EECcCeecccCC---------cccccCCccCCC
Confidence 358999999988765332 235789999985 488998887654
No 119
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=59.61 E-value=2.5 Score=35.83 Aligned_cols=49 Identities=20% Similarity=0.467 Sum_probs=30.6
Q ss_pred CCCcccccccccccCCCc-eEEecCCCcccHHHHHHHHh----cCCCCCCCcccc
Q 018233 296 HGGETCAICLEDYQDGEK-LKVLSCKHEFHASCVDSWLT----KWGTFCPVCKHD 345 (359)
Q Consensus 296 ~~~~~C~ICLe~f~~~~~-vr~LpC~H~FH~~CI~~Wl~----~~~~~CPlCR~~ 345 (359)
.....| ||...+.++.. +.---|..-||..|+..--. ...-.||.|+..
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 345688 99988754432 22224788999999852111 224469999753
No 120
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=59.47 E-value=6 Score=28.67 Aligned_cols=42 Identities=19% Similarity=0.461 Sum_probs=32.1
Q ss_pred CcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCC
Q 018233 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (359)
Q Consensus 298 ~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (359)
...|+.|-+.+..++.+. ..=+..||.+|+ .|-.|+.+|...
T Consensus 15 ~~~C~~C~~~I~~~~~~~-~a~~~~~H~~CF---------~C~~C~~~L~~~ 56 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNV-EYKGTVWHKDCF---------TCSNCKQVIGTG 56 (82)
T ss_dssp SCBCSSSCCBCCSSSCEE-ECSSCEEETTTC---------CCSSSCCCCTTS
T ss_pred CCcCccCCcccccCceEE-EECccccccccC---------chhhCCCccCCC
Confidence 468999999988766542 235889999995 499998888655
No 121
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.84 E-value=7.1 Score=29.02 Aligned_cols=42 Identities=31% Similarity=0.640 Sum_probs=30.9
Q ss_pred CCcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCC
Q 018233 297 GGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (359)
Q Consensus 297 ~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (359)
....|+-|-+.+...+.+ ..-+..||.+|+ .|-.|+..|...
T Consensus 14 ~~~~C~~C~~~I~~~~~v--~a~~~~~H~~CF---------~C~~C~~~L~~~ 55 (91)
T 2d8y_A 14 ARETCVECQKTVYPMERL--LANQQVFHISCF---------RCSYCNNKLSLG 55 (91)
T ss_dssp SSCBCTTTCCBCCTTSEE--ECSSSEEETTTC---------BCTTTCCBCCTT
T ss_pred CCCcCccCCCccCCceeE--EECCCEECCCCC---------eeCCCCCCCCCC
Confidence 356899999988876644 456788998885 477787777654
No 122
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=58.69 E-value=2.7 Score=30.66 Aligned_cols=42 Identities=24% Similarity=0.691 Sum_probs=31.3
Q ss_pred CcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCCC
Q 018233 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNS 350 (359)
Q Consensus 298 ~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~ 350 (359)
...|+.|-+.+..++.+ ..-+..||.+|+ .|-.|+.+|....
T Consensus 7 ~~~C~~C~~~I~~~~~~--~a~~~~~H~~CF---------~C~~C~~~L~~~~ 48 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEV--QCDGRSFHRCCF---------LCMVCRKNLDSTT 48 (81)
T ss_dssp -CBCSSSCCBCSSTTEE--EETTEEEESSSE---------ECSSSCCEECSSC
T ss_pred CCcCcCcCccccCceeE--EeCCcccccccC---------ccCCCCCCCCCCC
Confidence 56899999998777644 336889999985 4888888876553
No 123
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.65 E-value=6.3 Score=27.73 Aligned_cols=41 Identities=27% Similarity=0.632 Sum_probs=27.8
Q ss_pred CcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCC
Q 018233 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRN 348 (359)
Q Consensus 298 ~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (359)
...|+.|-+.+...+.+ +..=+..||.+|+ .|-.|+.+|..
T Consensus 5 ~~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF---------~C~~C~~~L~~ 45 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAG-VVALDRVFHVGCF---------VCSTCRAQLRG 45 (72)
T ss_dssp CCCCSSSCSCCCSSSCC-EECSSSEECTTTC---------BCSSSCCBCTT
T ss_pred CCCCccCCCccCCCceE-EEECCCeEcccCC---------cccccCCcCCc
Confidence 46788888887764322 2234788888885 48888887743
No 124
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.63 E-value=5.8 Score=27.90 Aligned_cols=42 Identities=19% Similarity=0.552 Sum_probs=31.0
Q ss_pred CcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCC
Q 018233 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (359)
Q Consensus 298 ~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (359)
...|+-|-+.+..++.+ +..-+..||.+|+ .|-.|+.+|...
T Consensus 5 ~~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF---------~C~~C~~~L~~~ 46 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRK-LEYGGQTWHEHCF---------LCSGCEQPLGSR 46 (72)
T ss_dssp CCBCSSSCCBCCSSSCE-ECSTTCCEETTTC---------BCTTTCCBTTTS
T ss_pred CCCCccCCCccccCccE-EEECccccCcccC---------eECCCCCcCCCC
Confidence 46899999998875433 3345889999985 488898887654
No 125
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=58.59 E-value=1.2 Score=33.76 Aligned_cols=53 Identities=21% Similarity=0.515 Sum_probs=33.9
Q ss_pred CCcccccccccccCC-CceEEe-cCCCcccHHHHHHHHhc-------CCCCCCCccccCCCC
Q 018233 297 GGETCAICLEDYQDG-EKLKVL-SCKHEFHASCVDSWLTK-------WGTFCPVCKHDMRNN 349 (359)
Q Consensus 297 ~~~~C~ICLe~f~~~-~~vr~L-pC~H~FH~~CI~~Wl~~-------~~~~CPlCR~~i~~~ 349 (359)
....|.||...-... +.+..- -|...||..|+.+=|.. ..=.||.|+......
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~~ 76 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRM 76 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCS
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhhh
Confidence 356899999764332 222222 38899999999875542 223599997665443
No 126
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.28 E-value=5.1 Score=29.12 Aligned_cols=41 Identities=17% Similarity=0.448 Sum_probs=30.5
Q ss_pred CCcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCC
Q 018233 297 GGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (359)
Q Consensus 297 ~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (359)
....|+-|-+.+. ++.+ ..-+..||.+|+ .|-.|+.+|...
T Consensus 14 ~~~~C~~C~~~I~-~~~v--~a~~~~~H~~CF---------~C~~C~~~L~~~ 54 (79)
T 2cor_A 14 GKYICQKCHAIID-EQPL--IFKNDPYHPDHF---------NCANCGKELTAD 54 (79)
T ss_dssp CCCBCTTTCCBCC-SCCC--CCSSSCCCTTTS---------BCSSSCCBCCTT
T ss_pred CCCCCccCCCEec-ceEE--EECcceeCCCCC---------EeCCCCCccCCC
Confidence 4568999999887 4333 345889999995 489998888755
No 127
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=58.27 E-value=2.6 Score=33.21 Aligned_cols=46 Identities=28% Similarity=0.684 Sum_probs=29.2
Q ss_pred cccccccccccCCCce-EEecCCCcccHHHHHHHHhcC---CCCCCCccc
Q 018233 299 ETCAICLEDYQDGEKL-KVLSCKHEFHASCVDSWLTKW---GTFCPVCKH 344 (359)
Q Consensus 299 ~~C~ICLe~f~~~~~v-r~LpC~H~FH~~CI~~Wl~~~---~~~CPlCR~ 344 (359)
..|.||.+.-++.+.+ .--.|...||..|+++=|... .=.||.|+.
T Consensus 62 ~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 62 KTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 3789998752232222 222488999999998655441 225999974
No 128
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.25 E-value=5.6 Score=28.40 Aligned_cols=43 Identities=23% Similarity=0.575 Sum_probs=32.0
Q ss_pred CCcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCC
Q 018233 297 GGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (359)
Q Consensus 297 ~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (359)
....|+-|-+.+...+.+.. .-+..||.+|+ .|-.|+.++...
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~-a~~~~~H~~CF---------~C~~C~~~L~~~ 52 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVN-SNGELYHEQCF---------VCAQCFQQFPEG 52 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEE-ETTEEECTTTC---------CCTTTCCCCGGG
T ss_pred CCCCchhcCCccCCCceEEE-eCccEeccccC---------eECCCCCCCCCC
Confidence 45799999999886554432 35789999995 488898887654
No 129
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=57.89 E-value=5.5 Score=27.92 Aligned_cols=41 Identities=17% Similarity=0.468 Sum_probs=30.1
Q ss_pred CcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCCC
Q 018233 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNNS 350 (359)
Q Consensus 298 ~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~~ 350 (359)
...|.-|-+.+.. +.+ ..-+..||.+|+ .|-.|+.+|....
T Consensus 5 ~~~C~~C~~~I~~-~~~--~a~~~~~H~~CF---------~C~~C~~~L~~~~ 45 (70)
T 2d8x_A 5 SSGCHQCGEFIIG-RVI--KAMNNSWHPECF---------RCDLCQEVLADIG 45 (70)
T ss_dssp SSBCSSSCCBCCS-CCE--EETTEEECTTTS---------BCSSSCCBCSSSC
T ss_pred CCcCccCCCEecc-eEE--EECcccccccCC---------EeCCCCCcCCCCc
Confidence 5689999988873 333 335789999995 4889988887653
No 130
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=57.43 E-value=1.3 Score=32.82 Aligned_cols=46 Identities=28% Similarity=0.700 Sum_probs=26.7
Q ss_pred ccccccccccCCCceEEecCCCcccHHHHHHHHhcC---C-CCCCCcccc
Q 018233 300 TCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKW---G-TFCPVCKHD 345 (359)
Q Consensus 300 ~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~---~-~~CPlCR~~ 345 (359)
.|.||-..-..++.+.-=.|...||..|+++=|... . =.||.|+.+
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~d 77 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 77 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC--
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCcccc
Confidence 566776653332212111378899999998755441 1 259999753
No 131
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=57.24 E-value=6.1 Score=27.87 Aligned_cols=42 Identities=21% Similarity=0.529 Sum_probs=30.9
Q ss_pred CcccccccccccC--CCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCC
Q 018233 298 GETCAICLEDYQD--GEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (359)
Q Consensus 298 ~~~C~ICLe~f~~--~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (359)
...|+-|-+.+.. .+.+ +..-+..||.+|+ .|-.|+.+|...
T Consensus 5 ~~~C~~C~~~I~~~~~~~~-~~a~~~~wH~~CF---------~C~~C~~~L~~~ 48 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKY-ISFEERQWHNDCF---------NCKKCSLSLVGR 48 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSC-EECSSCEECTTTC---------BCSSSCCBCTTS
T ss_pred CCCCcCCCccccCCCCcce-EEECCcccCcccC---------EeccCCCcCCCC
Confidence 5689999999885 3333 2336889999995 499998888644
No 132
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=57.00 E-value=8.3 Score=28.50 Aligned_cols=43 Identities=16% Similarity=0.390 Sum_probs=32.3
Q ss_pred CCCCcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCC
Q 018233 295 CHGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (359)
......|.-|-+.+.. +. +..-+..||.+|+ .|-.|+..|...
T Consensus 22 ~~~~~~C~~C~~~I~~-~~--~~a~~~~~H~~CF---------~C~~C~~~L~~~ 64 (89)
T 1x64_A 22 AQRMPLCDKCGSGIVG-AV--VKARDKYRHPECF---------VCADCNLNLKQK 64 (89)
T ss_dssp CCSCCBCTTTCCBCCS-CC--EESSSCEECTTTC---------CCSSSCCCTTTS
T ss_pred CCcCCCcccCCCEecc-cE--EEECCceECccCC---------EecCCCCCCCCC
Confidence 3446789999999875 32 3346789999995 599999888654
No 133
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=56.53 E-value=12 Score=27.79 Aligned_cols=38 Identities=24% Similarity=0.453 Sum_probs=29.1
Q ss_pred CCCcccccccccccCCCceEEec--CCCcccHHHHHHHHhc
Q 018233 296 HGGETCAICLEDYQDGEKLKVLS--CKHEFHASCVDSWLTK 334 (359)
Q Consensus 296 ~~~~~C~ICLe~f~~~~~vr~Lp--C~H~FH~~CI~~Wl~~ 334 (359)
...-.|.+|.|.+++.. ..+-| =+|.|+-.|-+.-++.
T Consensus 13 ~a~l~CtlC~erLEdtH-FVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTH-FVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTT-SEECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCc-eeeCCCccCCeeeccccHHHHHh
Confidence 34569999999988764 33434 2799999999998877
No 134
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=56.48 E-value=24 Score=26.71 Aligned_cols=52 Identities=23% Similarity=0.420 Sum_probs=36.1
Q ss_pred CCcccccccccccCCC--ceEEe--cCCCcccHHHHHHHHhcCCCCCCCccccCCC
Q 018233 297 GGETCAICLEDYQDGE--KLKVL--SCKHEFHASCVDSWLTKWGTFCPVCKHDMRN 348 (359)
Q Consensus 297 ~~~~C~ICLe~f~~~~--~vr~L--pC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (359)
....|.||=+++-... .+.+. -|+--.++.|.+-=.+..+..||-|+.....
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 4579999999953321 12222 3677889999986555555569999998853
No 135
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.10 E-value=6.2 Score=28.25 Aligned_cols=41 Identities=20% Similarity=0.518 Sum_probs=29.7
Q ss_pred CcccccccccccC--CCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCC
Q 018233 298 GETCAICLEDYQD--GEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRN 348 (359)
Q Consensus 298 ~~~C~ICLe~f~~--~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (359)
...|+.|-+.+.. .+. .+..-+..||.+|+ .|-.|+.+|..
T Consensus 5 ~~~C~~C~~~I~~~g~~~-~~~a~~~~wH~~CF---------~C~~C~~~L~~ 47 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAK-FICFQDSQWHSECF---------NCGKCSVSLVG 47 (76)
T ss_dssp CCCCTTTCCCCCTTTTCC-EEEETTEEEEGGGC---------BCTTTCCBCSS
T ss_pred CCCCccCCCcccCCCCce-eEEECCcccCcccC---------ChhhCCCcCCC
Confidence 4589999999885 222 23346889999995 48888888764
No 136
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=54.65 E-value=5.7 Score=30.29 Aligned_cols=45 Identities=33% Similarity=0.698 Sum_probs=27.1
Q ss_pred CCcccccccccccCCCceEEec--CC-CcccHHHHHHHHhc---CCCCCCCcccc
Q 018233 297 GGETCAICLEDYQDGEKLKVLS--CK-HEFHASCVDSWLTK---WGTFCPVCKHD 345 (359)
Q Consensus 297 ~~~~C~ICLe~f~~~~~vr~Lp--C~-H~FH~~CI~~Wl~~---~~~~CPlCR~~ 345 (359)
+...| ||-.... ++.|.-=- |. .-||..|+. |.. .+-.||.|+..
T Consensus 35 e~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 35 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CCBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCC
T ss_pred CCcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCc
Confidence 44567 9988643 43222112 44 579999997 333 23469999764
No 137
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=54.61 E-value=4.5 Score=29.69 Aligned_cols=49 Identities=16% Similarity=0.345 Sum_probs=30.5
Q ss_pred CCcccccccccccCCCceEEe--cCCCcccHHHHHHHHh--------cCCCCCCCccccC
Q 018233 297 GGETCAICLEDYQDGEKLKVL--SCKHEFHASCVDSWLT--------KWGTFCPVCKHDM 346 (359)
Q Consensus 297 ~~~~C~ICLe~f~~~~~vr~L--pC~H~FH~~CI~~Wl~--------~~~~~CPlCR~~i 346 (359)
....| ||-.....+.-|.-= -|..-||..|+.-=-. .....||.|+..-
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 45577 798875555433333 4888999999852111 1234699997643
No 138
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.97 E-value=7.4 Score=28.87 Aligned_cols=41 Identities=24% Similarity=0.438 Sum_probs=31.2
Q ss_pred CCcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCC
Q 018233 297 GGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (359)
Q Consensus 297 ~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (359)
....|+-|-+.+. ++.+ ..-+..||.+|+ .|-.|+..|...
T Consensus 24 ~~~~C~~C~~~I~-~~~v--~a~~~~~H~~CF---------~C~~C~~~L~~~ 64 (90)
T 2dar_A 24 RTPMCAHCNQVIR-GPFL--VALGKSWHPEEF---------NCAHCKNTMAYI 64 (90)
T ss_dssp CCCBBSSSCCBCC-SCEE--EETTEEECTTTC---------BCSSSCCBCSSS
T ss_pred CCCCCccCCCEec-ceEE--EECCccccccCC---------ccCCCCCCCCCC
Confidence 4579999999985 4433 346899999995 599999888754
No 139
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=53.80 E-value=7.5 Score=27.76 Aligned_cols=33 Identities=30% Similarity=0.590 Sum_probs=26.4
Q ss_pred CCCCcccccccccccCCCceEEecC-CCcccHHHHHHH
Q 018233 295 CHGGETCAICLEDYQDGEKLKVLSC-KHEFHASCVDSW 331 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~~~vr~LpC-~H~FH~~CI~~W 331 (359)
.++..-|.||.++ ..+|-+.| +-+|+..|..+-
T Consensus 5 ~ee~pWC~ICneD----AtlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 5 SSGLPWCCICNED----ATLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CCCCSSCTTTCSC----CCEEETTTTSEEECSSHHHHH
T ss_pred CcCCCeeEEeCCC----CeEEecCCCCceehHHHHHHH
Confidence 4456789999998 34788889 789999998764
No 140
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.63 E-value=10 Score=26.47 Aligned_cols=40 Identities=20% Similarity=0.634 Sum_probs=29.6
Q ss_pred CcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCC
Q 018233 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (359)
Q Consensus 298 ~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (359)
...|+-|-+.+..+ . +..-+..||.+|+ .|-.|+.+|...
T Consensus 5 ~~~C~~C~~~I~~~-~--~~a~~~~~H~~CF---------~C~~C~~~L~~~ 44 (70)
T 2d8z_A 5 SSGCVQCKKPITTG-G--VTYREQPWHKECF---------VCTACRKQLSGQ 44 (70)
T ss_dssp CCBCSSSCCBCCSS-E--EESSSSEEETTTS---------BCSSSCCBCTTS
T ss_pred CCCCcccCCeeccc-e--EEECccccCCCCC---------ccCCCCCcCCcC
Confidence 46899999988743 2 3446889999995 488998888644
No 141
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=52.01 E-value=7.5 Score=28.07 Aligned_cols=45 Identities=33% Similarity=0.698 Sum_probs=26.8
Q ss_pred CCcccccccccccCCCceEEec--CC-CcccHHHHHHHHhc---CCCCCCCcccc
Q 018233 297 GGETCAICLEDYQDGEKLKVLS--CK-HEFHASCVDSWLTK---WGTFCPVCKHD 345 (359)
Q Consensus 297 ~~~~C~ICLe~f~~~~~vr~Lp--C~-H~FH~~CI~~Wl~~---~~~~CPlCR~~ 345 (359)
+...| ||-.... ++.|.-=- |. .-||..|+. |.. ..-.||.|+..
T Consensus 15 ~~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp SCCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred CCCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcc
Confidence 45567 8987632 43111112 44 689999997 333 23369999764
No 142
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=51.41 E-value=2.8 Score=37.44 Aligned_cols=48 Identities=27% Similarity=0.621 Sum_probs=26.4
Q ss_pred CcccccccccccCCCceEEecCCCcccHHHHHHHHhcC----CCCCCCcccc
Q 018233 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKW----GTFCPVCKHD 345 (359)
Q Consensus 298 ~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~----~~~CPlCR~~ 345 (359)
...|.+|-..=..++.+.-=.|...||..|+++=|... .=.||.|+.+
T Consensus 174 ~c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 174 VCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp TTSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 34688888753333333222488899999999644331 2259999753
No 143
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=50.66 E-value=4.8 Score=30.98 Aligned_cols=46 Identities=22% Similarity=0.326 Sum_probs=29.6
Q ss_pred CcccccccccccCCCceEEecCCCcccHHHHHHHHhc--CCCCCCCccc
Q 018233 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTK--WGTFCPVCKH 344 (359)
Q Consensus 298 ~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~--~~~~CPlCR~ 344 (359)
...| ||-.....+..|.--.|.--||..|+..=+.. ..-.||.|+.
T Consensus 28 ~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 28 VTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp BCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 3467 89877666643333348899999998652222 1236999973
No 144
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.41 E-value=9.2 Score=27.56 Aligned_cols=40 Identities=18% Similarity=0.354 Sum_probs=29.9
Q ss_pred CCCcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCC
Q 018233 296 HGGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMR 347 (359)
Q Consensus 296 ~~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~ 347 (359)
.....|.-|-+.+.. +. +..-+..||.+|+ .|-.|+..|.
T Consensus 13 ~~~~~C~~C~~~I~~-~~--~~a~~~~~H~~CF---------~C~~C~~~L~ 52 (79)
T 1x62_A 13 QKLPMCDKCGTGIVG-VF--VKLRDRHRHPECY---------VCTDCGTNLK 52 (79)
T ss_dssp CCCCCCSSSCCCCCS-SC--EECSSCEECTTTT---------SCSSSCCCHH
T ss_pred CCCCccccCCCCccC-cE--EEECcceeCcCcC---------eeCCCCCCCC
Confidence 345799999999875 32 3346899999996 4888887764
No 145
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.26 E-value=7.8 Score=28.03 Aligned_cols=39 Identities=23% Similarity=0.623 Sum_probs=28.8
Q ss_pred cccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCC
Q 018233 299 ETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (359)
Q Consensus 299 ~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (359)
..|+-|-+.+. ++.++ .-+..||.+|+ .|-.|+.+|...
T Consensus 16 ~~C~~C~~~I~-~~~v~--a~~~~wH~~CF---------~C~~C~~~L~~~ 54 (81)
T 1v6g_A 16 TRCFSCDQFIE-GEVVS--ALGKTYHPDCF---------VCAVCRLPFPPG 54 (81)
T ss_dssp CBCTTTCCBCC-SCCEE--ETTEEECTTTS---------SCSSSCCCCCSS
T ss_pred CcCccccCEec-cceEE--ECCceeCccCC---------ccccCCCCCCCC
Confidence 48999999887 34333 35789999995 488888877644
No 146
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=48.81 E-value=15 Score=28.88 Aligned_cols=47 Identities=13% Similarity=0.068 Sum_probs=25.3
Q ss_pred ccccccccccC-CCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCC
Q 018233 300 TCAICLEDYQD-GEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRN 348 (359)
Q Consensus 300 ~C~ICLe~f~~-~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (359)
.|..|-..+.+ +... ...=+..|+..|...-+.... .|-.|...|..
T Consensus 34 ~C~~C~~~L~~~~~~~-~~~~g~~yC~~cy~~~f~~~~-~C~~C~~~I~~ 81 (122)
T 1m3v_A 34 KCSSCQAQLGDIGTSS-YTKSGMILCRNDYIRLFGNSG-AGGSGGHMGSG 81 (122)
T ss_dssp CCSSSCCCTTTSEECC-EEETTEEECHHHHHHHHCCCC-SSSCSSCCSCC
T ss_pred CcCCCCCcccccCCeE-EEECCeeecHHHHHHHcCCCC-ccccCCCCcCc
Confidence 66666666542 1111 122355666777665443322 48888777764
No 147
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=48.01 E-value=9.5 Score=26.52 Aligned_cols=43 Identities=23% Similarity=0.575 Sum_probs=32.7
Q ss_pred CCcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCC
Q 018233 297 GGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (359)
Q Consensus 297 ~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (359)
....|+-|-+.+..++.+.. .=+..||.+|+ .|-.|+.++...
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~-~~~~~~H~~CF---------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVN-SNGELYHEQCF---------VCAQCFQQFPEG 52 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEE-ETTEEEETTTS---------SCTTTCCCCGGG
T ss_pred CCccchhcCccccCCceEEE-eCcCeeCcCCC---------cccCCCCCCCCC
Confidence 35699999999887775432 35788999996 488898887654
No 148
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.49 E-value=6 Score=28.61 Aligned_cols=38 Identities=24% Similarity=0.543 Sum_probs=27.3
Q ss_pred cccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCC
Q 018233 299 ETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRN 348 (359)
Q Consensus 299 ~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (359)
..|+.|-+.+. ++.+ ..-+..||.+|+ .|-.|+..|..
T Consensus 16 ~~C~~C~~~I~-~~~~--~a~~~~~H~~CF---------~C~~C~~~L~~ 53 (81)
T 1x6a_A 16 EFCHGCSLLMT-GPFM--VAGEFKYHPECF---------ACMSCKVIIED 53 (81)
T ss_dssp CBCTTTCCBCC-SCCB--CCTTCCBCTTSC---------BCTTTCCBCCT
T ss_pred CcCccCCCCcC-ceEE--EECCceeccccC---------CccCCCCccCC
Confidence 47888988877 3322 235788998885 48888888754
No 149
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=47.48 E-value=4.3 Score=24.28 Aligned_cols=29 Identities=24% Similarity=0.448 Sum_probs=20.5
Q ss_pred CcccccccccccCCCceEEecCCCcccHHHH
Q 018233 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCV 328 (359)
Q Consensus 298 ~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI 328 (359)
.+.|+.|-...-..|++. .=|..||+.|+
T Consensus 3 ~~~C~~C~k~Vy~~Ek~~--~~g~~~Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEKVN--CLDKFWHKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGGGCCC--SSSSCCCGGGC
T ss_pred CCcCCccCCEEecceeEE--ECCeEecccCC
Confidence 358999988866555433 35789999884
No 150
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=47.11 E-value=9 Score=26.42 Aligned_cols=40 Identities=18% Similarity=0.471 Sum_probs=30.4
Q ss_pred CcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCC
Q 018233 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (359)
Q Consensus 298 ~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (359)
...|+-|-+.+. ++ .+..-+..||.+|+ .|-.|+.++...
T Consensus 5 ~~~C~~C~~~I~-~~--~~~a~~~~~H~~CF---------~C~~C~~~L~~~ 44 (66)
T 1nyp_A 5 VPICGACRRPIE-GR--VVNAMGKQWHVEHF---------VCAKCEKPFLGH 44 (66)
T ss_dssp CCEETTTTEECC-SC--EECCTTSBEETTTC---------BCTTTCCBCSSS
T ss_pred CCCCcccCCEec-ce--EEEECccccccCcC---------EECCCCCCCCCC
Confidence 468999999988 44 23446889999995 499999888654
No 151
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=46.26 E-value=17 Score=26.17 Aligned_cols=51 Identities=18% Similarity=0.426 Sum_probs=31.1
Q ss_pred CCCCcccccccccc-cCCCceEEe-cCCCcccHHHHHHHHhc-CCCCCCCcccc
Q 018233 295 CHGGETCAICLEDY-QDGEKLKVL-SCKHEFHASCVDSWLTK-WGTFCPVCKHD 345 (359)
Q Consensus 295 ~~~~~~C~ICLe~f-~~~~~vr~L-pC~H~FH~~CI~~Wl~~-~~~~CPlCR~~ 345 (359)
....+.|.||.+.- .+++.+..= .|.-.||..|+.+=..- ..=.||.|+..
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 34578999998764 222323222 48889999999752211 12258888653
No 152
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=45.49 E-value=6.8 Score=31.01 Aligned_cols=35 Identities=14% Similarity=0.391 Sum_probs=17.0
Q ss_pred cccccccccccCCCceEEecCCCcccHHHHHHHHhc
Q 018233 299 ETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTK 334 (359)
Q Consensus 299 ~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~ 334 (359)
..|..|-..+..++..... =+..|+..|....+..
T Consensus 37 F~C~~C~~~L~~g~~f~~~-~g~~yC~~cy~~~~~~ 71 (123)
T 2l3k_A 37 FKCAACQKHFSVGDRYLLI-NSDIVCEQDIYEWTKI 71 (123)
T ss_dssp CBCTTTCCBCCTTCEEEEC-SSSEEEGGGHHHHHHH
T ss_pred CccccCCCCCCCCCcEEee-CCEEEcHHHhHHHhcc
Confidence 3566665555444332221 3455556665554433
No 153
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=45.18 E-value=12 Score=35.73 Aligned_cols=48 Identities=21% Similarity=0.369 Sum_probs=31.8
Q ss_pred ccccccccccCCCceEEecCCCc--ccHHHHHHHHhcC-CCCCCCccccCCCC
Q 018233 300 TCAICLEDYQDGEKLKVLSCKHE--FHASCVDSWLTKW-GTFCPVCKHDMRNN 349 (359)
Q Consensus 300 ~C~ICLe~f~~~~~vr~LpC~H~--FH~~CI~~Wl~~~-~~~CPlCR~~i~~~ 349 (359)
.|+|-+..++. .+|-..|.|. |-..=+....... .-.||+|...+...
T Consensus 217 ~CPlS~~ri~~--P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~ 267 (360)
T 4fo9_A 217 MCPLGKMRLTI--PCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYE 267 (360)
T ss_dssp BCTTTCSBCSS--EEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGG
T ss_pred eCCCccceecc--CCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHH
Confidence 78887777654 4788889997 6544444433332 33599999887644
No 154
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=44.76 E-value=13 Score=27.97 Aligned_cols=55 Identities=15% Similarity=0.363 Sum_probs=33.3
Q ss_pred CCCCccccccccccc-CCCceEEe-cCCCcccHHHHHHHHhc-CCCCCCCccccCCCC
Q 018233 295 CHGGETCAICLEDYQ-DGEKLKVL-SCKHEFHASCVDSWLTK-WGTFCPVCKHDMRNN 349 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~-~~~~vr~L-pC~H~FH~~CI~~Wl~~-~~~~CPlCR~~i~~~ 349 (359)
.+++..|.||.+.-. .++.+..- -|.-.||..|+.+=+.- ..=.||.|.......
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~~ 79 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARP 79 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTSC
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccchh
Confidence 346789999997632 22222221 37789999999753211 122599997665443
No 155
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.65 E-value=10 Score=26.36 Aligned_cols=39 Identities=18% Similarity=0.559 Sum_probs=28.5
Q ss_pred CcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCC
Q 018233 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRN 348 (359)
Q Consensus 298 ~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (359)
...|+-|-+.+.. +.+. .-+..||.+|+ .|-.|+.+|..
T Consensus 5 ~~~C~~C~~~I~~-~~~~--a~~~~~H~~CF---------~C~~C~~~L~~ 43 (69)
T 2cur_A 5 SSGCVKCNKAITS-GGIT--YQDQPWHADCF---------VCVTCSKKLAG 43 (69)
T ss_dssp CCCCSSSCCCCCT-TCEE--ETTEEECTTTT---------BCTTTCCBCTT
T ss_pred cCCCcccCCEeCc-ceEE--ECccccccCcC---------EECCCCCCCCC
Confidence 4689999888864 3333 35788999885 48889888764
No 156
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=43.72 E-value=7.7 Score=27.04 Aligned_cols=19 Identities=16% Similarity=0.497 Sum_probs=10.4
Q ss_pred HhcCCCCCCCccccCCCCC
Q 018233 332 LTKWGTFCPVCKHDMRNNS 350 (359)
Q Consensus 332 l~~~~~~CPlCR~~i~~~~ 350 (359)
+..+...||.|+..|....
T Consensus 2 i~~~~k~CP~C~~~Iek~~ 20 (60)
T 1wd2_A 2 IAANTKECPKCHVTIEKDG 20 (60)
T ss_dssp CCCCCCCCTTTCCCCSSCC
T ss_pred ccccceECcCCCCeeEeCC
Confidence 3333334777776665544
No 157
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=42.48 E-value=1.3 Score=35.18 Aligned_cols=47 Identities=19% Similarity=0.465 Sum_probs=29.9
Q ss_pred ccccccccccCCCceEEecCCCcccHHHHHHHHhcC---CCCCCCccccC
Q 018233 300 TCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKW---GTFCPVCKHDM 346 (359)
Q Consensus 300 ~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~---~~~CPlCR~~i 346 (359)
.|.||-..-..++.+.--.|...||..|+++=|... .=.||.|+..+
T Consensus 60 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~ 109 (114)
T 2kwj_A 60 SCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELL 109 (114)
T ss_dssp CCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHH
T ss_pred ccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccchh
Confidence 688888764444433333488999999998633321 22488886544
No 158
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=41.03 E-value=9.1 Score=30.49 Aligned_cols=39 Identities=23% Similarity=0.479 Sum_probs=30.4
Q ss_pred CcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCC
Q 018233 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMR 347 (359)
Q Consensus 298 ~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~ 347 (359)
...|+-|-+.+.....+. .-+..||.+|+ .|-.|+..|.
T Consensus 61 ~~~C~~C~~~I~~~~~v~--a~~~~wH~~CF---------~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLY--AMDSYWHSRCL---------KCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEE--ETTEEEETTTS---------BCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEE--eCCcEEccccc---------CcCcCCCccc
Confidence 468999999987654333 46889999995 5999998885
No 159
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=41.00 E-value=2.6 Score=30.18 Aligned_cols=46 Identities=20% Similarity=0.377 Sum_probs=26.3
Q ss_pred CcccccccccccCCCceEEe--cCCCcccHHHHHHH---Hhc----CCCCCCCccc
Q 018233 298 GETCAICLEDYQDGEKLKVL--SCKHEFHASCVDSW---LTK----WGTFCPVCKH 344 (359)
Q Consensus 298 ~~~C~ICLe~f~~~~~vr~L--pC~H~FH~~CI~~W---l~~----~~~~CPlCR~ 344 (359)
...| ||-.....+..|.-= -|..-||..|+.-- ... ....||.||.
T Consensus 10 ~v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 10 KVRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp EECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CEEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 3456 897665555422221 27778999997310 000 1346999974
No 160
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=40.38 E-value=15 Score=25.64 Aligned_cols=43 Identities=23% Similarity=0.549 Sum_probs=26.8
Q ss_pred cccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCc
Q 018233 299 ETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVC 342 (359)
Q Consensus 299 ~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlC 342 (359)
..|--|...|......+--.|++.|+.+| |-.+-..-..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dC-D~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDC-DVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHH-HHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccch-hHHHHhhccCCcCC
Confidence 46999999986432222334899999999 22222222249988
No 161
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=40.16 E-value=17 Score=26.73 Aligned_cols=34 Identities=18% Similarity=0.546 Sum_probs=24.2
Q ss_pred CCcccccccccccCCCce-EEecCCCcccHHHHHH
Q 018233 297 GGETCAICLEDYQDGEKL-KVLSCKHEFHASCVDS 330 (359)
Q Consensus 297 ~~~~C~ICLe~f~~~~~v-r~LpC~H~FH~~CI~~ 330 (359)
+...|.+|-..|..-..- .---||++|+..|...
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 456899999999765321 1124899999999754
No 162
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=39.95 E-value=16 Score=25.86 Aligned_cols=42 Identities=24% Similarity=0.554 Sum_probs=30.5
Q ss_pred CcccccccccccC---CCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCC
Q 018233 298 GETCAICLEDYQD---GEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (359)
Q Consensus 298 ~~~C~ICLe~f~~---~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (359)
...|+-|-+.+.. .+. .+..=+..||.+|+ .|-.|+.+|...
T Consensus 15 ~~~C~~C~~~I~~~g~~~~-~~~a~~~~~H~~CF---------~C~~C~~~L~~~ 59 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSS-VVAYEGQSWHDYCF---------HCKKCSVNLANK 59 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCC-EEEETTEEEETTTC---------BCSSSCCBCTTS
T ss_pred CccCcccCCcccCCCCCce-eEEECcceeCcccC---------EehhcCCCCCCC
Confidence 4689999999885 222 22335789999995 599999888754
No 163
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=39.75 E-value=18 Score=34.66 Aligned_cols=49 Identities=27% Similarity=0.381 Sum_probs=31.6
Q ss_pred cccccccccccCCCceEEecCCCc--ccHHHHHHHHhc-CCCCCCCccccCCCC
Q 018233 299 ETCAICLEDYQDGEKLKVLSCKHE--FHASCVDSWLTK-WGTFCPVCKHDMRNN 349 (359)
Q Consensus 299 ~~C~ICLe~f~~~~~vr~LpC~H~--FH~~CI~~Wl~~-~~~~CPlCR~~i~~~ 349 (359)
-.|+|-+..++. .+|-..|.|. |-.+=+...... ..-.||+|...+...
T Consensus 250 L~CPlS~~ri~~--PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~ 301 (371)
T 3i2d_A 250 LQCPISYTRMKY--PSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALE 301 (371)
T ss_dssp SBCTTTSSBCSS--EEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGG
T ss_pred ecCCCccccccc--cCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHH
Confidence 378877777554 4788889997 554434333322 233599999887544
No 164
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=39.07 E-value=5.1 Score=31.28 Aligned_cols=46 Identities=22% Similarity=0.522 Sum_probs=28.8
Q ss_pred ccccccccccCCCceEEecCCCcccHHHHHHHHhc---CCCCCCCcccc
Q 018233 300 TCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTK---WGTFCPVCKHD 345 (359)
Q Consensus 300 ~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~---~~~~CPlCR~~ 345 (359)
.|.||-..-.+...+.--.|...||..|+++=+.. ..-.||.|+.-
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 67888776433332333348889999999864433 12259988654
No 165
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=38.78 E-value=20 Score=26.84 Aligned_cols=47 Identities=17% Similarity=0.310 Sum_probs=26.7
Q ss_pred CcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCC
Q 018233 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (359)
Q Consensus 298 ~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (359)
--.|..|-..+.... . ...=+..|+..|..+ .....|..|...|...
T Consensus 33 CF~C~~C~~~L~~~~-~-~~~~g~~yC~~cy~~---~~~~~C~~C~~~I~~~ 79 (101)
T 2cup_A 33 CFRCAKCLHPLANET-F-VAKDNKILCNKCTTR---EDSPKCKGCFKAIVAG 79 (101)
T ss_dssp TCCCSSSCCCTTSSC-C-EEETTEEECHHHHTT---CCCCBCSSSCCBCCSS
T ss_pred CCcccccCCCCCcCe-e-ECcCCEEEChhHhhh---hcCCccccCCCccccC
Confidence 346777777764322 1 112355666666532 2234588888888744
No 166
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=38.57 E-value=11 Score=32.16 Aligned_cols=40 Identities=23% Similarity=0.583 Sum_probs=21.9
Q ss_pred CcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCC
Q 018233 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRN 348 (359)
Q Consensus 298 ~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (359)
...|+.|-+.+..++.+. .-+..||.+|+ .|-.|+..|..
T Consensus 115 ~~~C~~C~~~I~~~~~v~--a~~~~~H~~CF---------~C~~C~~~L~~ 154 (192)
T 1b8t_A 115 SDGCPRCGQAVYAAEKVI--GAGKSWHKSCF---------RCAKCGKSLES 154 (192)
T ss_dssp CEECTTTSCEECSSSCEE--ETTEEECTTTC---------BCTTTCCBCCS
T ss_pred CCcCCCCCCEecCcEEEe--cCCCccchhcC---------CccccCCCCCC
Confidence 445666666665554443 23556666663 35666555543
No 167
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=38.02 E-value=16 Score=28.54 Aligned_cols=48 Identities=25% Similarity=0.434 Sum_probs=29.2
Q ss_pred CCCCcccccccccccCCCceEEe--cCCCcccHHHHHHHHhcC---CCCCCCccccCC
Q 018233 295 CHGGETCAICLEDYQDGEKLKVL--SCKHEFHASCVDSWLTKW---GTFCPVCKHDMR 347 (359)
Q Consensus 295 ~~~~~~C~ICLe~f~~~~~vr~L--pC~H~FH~~CI~~Wl~~~---~~~CPlCR~~i~ 347 (359)
...++.|.+|.+ .|+.+.-= .|...||..|+. |... .=.||.|+-.+.
T Consensus 12 ~~~~~~C~~C~~---~G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C 64 (107)
T 4gne_A 12 QMHEDYCFQCGD---GGELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDEC 64 (107)
T ss_dssp CSSCSSCTTTCC---CSEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTT
T ss_pred CCCCCCCCcCCC---CCcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcC
Confidence 345789999984 24322221 377899999997 4331 124887764443
No 168
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.61 E-value=16 Score=25.94 Aligned_cols=38 Identities=18% Similarity=0.517 Sum_probs=25.6
Q ss_pred CcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCC
Q 018233 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMR 347 (359)
Q Consensus 298 ~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~ 347 (359)
...|+-|-+.+.. +. +..-+..||.+|+ .|-.|+.+|.
T Consensus 5 ~~~C~~C~~~I~~-~~--v~a~~~~wH~~CF---------~C~~C~~~L~ 42 (73)
T 1wig_A 5 SSGCDSCEKYITG-RV--LEAGEKHYHPSCA---------LCVRCGQMFA 42 (73)
T ss_dssp CCSCSSSCCCCSS-CC--BCCSSCCBCTTTS---------CCSSSCCCCC
T ss_pred cCCcccCCCEecC-ee--EEeCCCCCCCCcC---------EeCCCCCCCC
Confidence 3578888887765 22 2345778888884 4777777765
No 169
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.96 E-value=16 Score=26.06 Aligned_cols=39 Identities=23% Similarity=0.624 Sum_probs=28.2
Q ss_pred CcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCC
Q 018233 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRN 348 (359)
Q Consensus 298 ~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (359)
...|+-|-+.+... . +..=+..||.+|+ .|-.|+.+|..
T Consensus 15 ~~~C~~C~~~I~~~-~--v~a~~~~~H~~CF---------~C~~C~~~L~~ 53 (80)
T 2cuq_A 15 APRCARCSKTLTQG-G--VTYRDQPWHRECL---------VCTGCQTPLAG 53 (80)
T ss_dssp SCCCTTTCCCCCSC-C--EESSSSEECTTTC---------BCSSSCCBCTT
T ss_pred CCcCCCCCCEecCc-E--EEECCchhhhhhC---------CcccCCCcCCC
Confidence 35899998887653 2 3345788998885 48888888754
No 170
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=35.14 E-value=5.8 Score=27.54 Aligned_cols=44 Identities=36% Similarity=0.705 Sum_probs=26.0
Q ss_pred CCcccccccccccCCCceEEec--CC-CcccHHHHHHHHhcC---CCCCCCccc
Q 018233 297 GGETCAICLEDYQDGEKLKVLS--CK-HEFHASCVDSWLTKW---GTFCPVCKH 344 (359)
Q Consensus 297 ~~~~C~ICLe~f~~~~~vr~Lp--C~-H~FH~~CI~~Wl~~~---~~~CPlCR~ 344 (359)
+...| ||-... .++-+.-=- |. .-||..|+. |... +-.||.|+.
T Consensus 8 e~~yC-~C~~~~-~g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVS-YGEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCC-CCCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 34566 898764 243222112 55 689999997 3331 235999964
No 171
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=35.00 E-value=14 Score=30.10 Aligned_cols=33 Identities=21% Similarity=0.473 Sum_probs=22.9
Q ss_pred CCCccccccccccc-C-CCceEEecCCCcccHHHH
Q 018233 296 HGGETCAICLEDYQ-D-GEKLKVLSCKHEFHASCV 328 (359)
Q Consensus 296 ~~~~~C~ICLe~f~-~-~~~vr~LpC~H~FH~~CI 328 (359)
.+...|.+|...|- . +....-..|+|.++..|=
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~ 87 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCG 87 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccC
Confidence 45789999999983 2 333344458888887773
No 172
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=34.68 E-value=5.8 Score=27.61 Aligned_cols=44 Identities=34% Similarity=0.685 Sum_probs=25.3
Q ss_pred CCcccccccccccCCCceEEec--CC-CcccHHHHHHHHhc---CCCCCCCccc
Q 018233 297 GGETCAICLEDYQDGEKLKVLS--CK-HEFHASCVDSWLTK---WGTFCPVCKH 344 (359)
Q Consensus 297 ~~~~C~ICLe~f~~~~~vr~Lp--C~-H~FH~~CI~~Wl~~---~~~~CPlCR~ 344 (359)
+...| ||.... .++.|.-=- |. .-||..|+. |.. ..-.||.|+.
T Consensus 9 e~~~C-~C~~~~-~g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVS-YGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcC-CCCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 34566 898763 242111112 44 579999997 333 2335999864
No 173
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=33.75 E-value=25 Score=25.92 Aligned_cols=34 Identities=12% Similarity=0.284 Sum_probs=24.5
Q ss_pred CCcccccccccccCCCc-eEEecCCCcccHHHHHH
Q 018233 297 GGETCAICLEDYQDGEK-LKVLSCKHEFHASCVDS 330 (359)
Q Consensus 297 ~~~~C~ICLe~f~~~~~-vr~LpC~H~FH~~CI~~ 330 (359)
+...|.+|-..|..-.. -.---||++|+.+|...
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 46799999999976532 11124899999999754
No 174
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.65 E-value=17 Score=26.17 Aligned_cols=42 Identities=21% Similarity=0.522 Sum_probs=29.4
Q ss_pred CcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCC
Q 018233 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (359)
Q Consensus 298 ~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (359)
...|+-|-+.+..++.+. ..=+..||.+|+ .|-.|+.+|...
T Consensus 15 ~~~C~~C~~~I~~~~~~~-~a~~~~~H~~CF---------~C~~C~~~L~~~ 56 (82)
T 2ehe_A 15 ANTCAECQQLIGHDSREL-FYEDRHFHEGCF---------RCCRCQRSLADE 56 (82)
T ss_dssp SCBCTTTCCBCCSSCCBC-CCSSCCCBTTTS---------BCTTTCCBCSSC
T ss_pred CCcCccCCCccccCcEEE-EeCCccccccCC---------eecCCCCccCCC
Confidence 348999999988433221 224789999985 488888887643
No 175
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=32.68 E-value=15 Score=25.22 Aligned_cols=41 Identities=17% Similarity=0.463 Sum_probs=30.0
Q ss_pred cccccccccccCCCceEEecCCCccc--HHHHHHHHhcCCCCCCCccccCCCC
Q 018233 299 ETCAICLEDYQDGEKLKVLSCKHEFH--ASCVDSWLTKWGTFCPVCKHDMRNN 349 (359)
Q Consensus 299 ~~C~ICLe~f~~~~~vr~LpC~H~FH--~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (359)
..|+-|-+.+..++.. +..-+..|| .+|+ .|-.|+.+|...
T Consensus 3 ~~C~~C~~~I~~~~~~-v~a~~~~wH~~~~CF---------~C~~C~~~L~~~ 45 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQR-VTYNNFSWHASTECF---------LCSCCSKCLIGQ 45 (65)
T ss_dssp EECTTTSSEECTTSCE-EEETTEEEETTTTTS---------BCTTTCCBCTTS
T ss_pred CCCcCCCCeeccCceE-EEECCCccCCCCCCE---------ECCCCCCcCCCC
Confidence 4789999998874322 223588999 9995 588998888654
No 176
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=32.15 E-value=23 Score=27.74 Aligned_cols=47 Identities=13% Similarity=0.202 Sum_probs=31.5
Q ss_pred CcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCC
Q 018233 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (359)
Q Consensus 298 ~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (359)
--.|..|-..+... . -...=+..|+..|...- ....|+.|...|...
T Consensus 30 CF~C~~C~~~L~~~-~-f~~~~g~~yC~~cy~~~---~~~~C~~C~~~I~~~ 76 (126)
T 2xqn_T 30 HFCCFDCDSILAGE-I-YVMVNDKPVCKPCYVKN---HAVVCQGCHNAIDPE 76 (126)
T ss_dssp GSBCTTTCCBCTTS-E-EEEETTEEEEHHHHHHH---SCCBCTTTCSBCCTT
T ss_pred CCCcCCCCCCCCcC-E-EEeECCEEechHHhCcC---cCccCcccCCcCCcC
Confidence 45888888887643 2 22234678888887653 233599999999864
No 177
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.02 E-value=17 Score=26.13 Aligned_cols=40 Identities=28% Similarity=0.604 Sum_probs=29.2
Q ss_pred CcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCC
Q 018233 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (359)
Q Consensus 298 ~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (359)
...|+-|-+.+.. +.+ ..-+..||.+|+ .|..|+.+|...
T Consensus 15 ~~~C~~C~~~I~~-~~~--~a~~~~~H~~CF---------~C~~C~~~L~~~ 54 (81)
T 2dlo_A 15 LEKCATCSQPILD-RIL--RAMGKAYHPGCF---------TCVVCHRGLDGI 54 (81)
T ss_dssp CCBCTTTCCBCCS-CCE--EETTEEECTTTC---------BCSSSCCBCTTS
T ss_pred CCccccCCCeecc-eeE--EECCccccHHhc---------CcccCCCccCCC
Confidence 5689999998873 323 335789999985 489998888644
No 178
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.83 E-value=17 Score=25.97 Aligned_cols=40 Identities=18% Similarity=0.454 Sum_probs=29.0
Q ss_pred CcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCC
Q 018233 298 GETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (359)
Q Consensus 298 ~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (359)
...|+-|-+.+.. +.+ ..-+..||.+|+ .|-.|+.+|...
T Consensus 15 ~~~C~~C~~~I~~-~~v--~a~~~~~H~~CF---------~C~~C~~~L~~~ 54 (80)
T 1x3h_A 15 SPKCGGCNRPVLE-NYL--SAMDTVWHPECF---------VCGDCFTSFSTG 54 (80)
T ss_dssp SCBCTTTCCBCCS-SCE--EETTEEECTTTC---------BCSSSCCBSCSS
T ss_pred CCccccCCCeecc-eeE--EECCCeEecCcC---------ChhhCCCCCCCC
Confidence 3589999888875 333 335788998885 488898888654
No 179
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=31.80 E-value=31 Score=25.74 Aligned_cols=52 Identities=15% Similarity=0.287 Sum_probs=31.7
Q ss_pred CCCcccccccccccCCCc-eEEecCCCcccHHHHHHHHh------cCCCCCCCccccCC
Q 018233 296 HGGETCAICLEDYQDGEK-LKVLSCKHEFHASCVDSWLT------KWGTFCPVCKHDMR 347 (359)
Q Consensus 296 ~~~~~C~ICLe~f~~~~~-vr~LpC~H~FH~~CI~~Wl~------~~~~~CPlCR~~i~ 347 (359)
.+...|.+|-..|..-.. -.---||++|+..|....+. .....|-.|...+.
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~ 65 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILT 65 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHH
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHH
Confidence 345689999999876531 11124899999999754221 11123777755543
No 180
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=31.78 E-value=10 Score=29.62 Aligned_cols=24 Identities=25% Similarity=0.642 Sum_probs=13.9
Q ss_pred CCCcccHHHHHHHHhcCCCCCCCccccCCC
Q 018233 319 CKHEFHASCVDSWLTKWGTFCPVCKHDMRN 348 (359)
Q Consensus 319 C~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (359)
||+.|. +. +. ....||.|+..-..
T Consensus 73 CG~~F~----~~-~~-kPsrCP~CkSe~Ie 96 (105)
T 2gmg_A 73 CGFVFK----AE-IN-IPSRCPKCKSEWIE 96 (105)
T ss_dssp TCCBCC----CC-SS-CCSSCSSSCCCCBC
T ss_pred CcCeec----cc-CC-CCCCCcCCCCCccC
Confidence 899981 11 11 12359999876433
No 181
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=30.71 E-value=22 Score=26.68 Aligned_cols=34 Identities=15% Similarity=0.416 Sum_probs=24.4
Q ss_pred CcccccccccccCCCc-eEEecCCCcccHHHHHHH
Q 018233 298 GETCAICLEDYQDGEK-LKVLSCKHEFHASCVDSW 331 (359)
Q Consensus 298 ~~~C~ICLe~f~~~~~-vr~LpC~H~FH~~CI~~W 331 (359)
...|.+|...|..-.. ..--.||++|+..|....
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 4689999999875432 222249999999997543
No 182
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=30.09 E-value=31 Score=24.67 Aligned_cols=32 Identities=19% Similarity=0.416 Sum_probs=22.6
Q ss_pred CcccccccccccCCCc-eEEecCCCcccHHHHH
Q 018233 298 GETCAICLEDYQDGEK-LKVLSCKHEFHASCVD 329 (359)
Q Consensus 298 ~~~C~ICLe~f~~~~~-vr~LpC~H~FH~~CI~ 329 (359)
+..|.+|-..|..-.. -.---||++|+.+|..
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 3589999999876431 1112489999999964
No 183
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=30.02 E-value=21 Score=27.58 Aligned_cols=13 Identities=23% Similarity=0.899 Sum_probs=11.5
Q ss_pred cccHHHHHHHHhc
Q 018233 322 EFHASCVDSWLTK 334 (359)
Q Consensus 322 ~FH~~CI~~Wl~~ 334 (359)
-||+.||..|+..
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5999999999865
No 184
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=29.83 E-value=21 Score=27.50 Aligned_cols=13 Identities=31% Similarity=1.040 Sum_probs=11.4
Q ss_pred cccHHHHHHHHhc
Q 018233 322 EFHASCVDSWLTK 334 (359)
Q Consensus 322 ~FH~~CI~~Wl~~ 334 (359)
-||+.||..|+..
T Consensus 41 GFCRNCLskWy~~ 53 (104)
T 3fyb_A 41 DFCRNCLAKWLME 53 (104)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5999999999875
No 185
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=29.34 E-value=25 Score=29.86 Aligned_cols=39 Identities=18% Similarity=0.546 Sum_probs=28.4
Q ss_pred ccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCC
Q 018233 300 TCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRN 348 (359)
Q Consensus 300 ~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (359)
.|..|-+.+...+.+. ..-++.||.+|+ .|-.|+..|..
T Consensus 71 ~C~~C~~~I~~~e~~i-~a~~~~~H~~CF---------~C~~C~~~L~~ 109 (188)
T 1rut_X 71 ACSACGQSIPASELVM-RAQGNVYHLKCF---------TCSTCRNRLVP 109 (188)
T ss_dssp ECTTTCCEECTTSEEE-EETTEEECGGGC---------BCTTTCCBCCT
T ss_pred ccccCCCccccCcEEE-EcCCCEEeCCCC---------eECCCCCCCCC
Confidence 6999998887655332 235889999994 48888877753
No 186
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=28.91 E-value=24 Score=28.26 Aligned_cols=32 Identities=19% Similarity=0.454 Sum_probs=23.0
Q ss_pred CcccccccccccCCCc-eEEecCCCcccHHHHH
Q 018233 298 GETCAICLEDYQDGEK-LKVLSCKHEFHASCVD 329 (359)
Q Consensus 298 ~~~C~ICLe~f~~~~~-vr~LpC~H~FH~~CI~ 329 (359)
...|.+|-..|..-.. ..--.||++|+..|..
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~ 101 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSA 101 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSC
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhC
Confidence 4689999999975431 1122499999999964
No 187
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=28.43 E-value=6.8 Score=24.22 Aligned_cols=15 Identities=20% Similarity=0.682 Sum_probs=9.8
Q ss_pred CcccccccccccCCC
Q 018233 298 GETCAICLEDYQDGE 312 (359)
Q Consensus 298 ~~~C~ICLe~f~~~~ 312 (359)
...|+||+.++...+
T Consensus 5 GFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 5 GFICPQCMKSLGSAD 19 (34)
T ss_dssp EEECTTTCCEESSHH
T ss_pred ccCCcHHHHHcCCHH
Confidence 457777777765543
No 188
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=27.77 E-value=20 Score=25.82 Aligned_cols=49 Identities=24% Similarity=0.401 Sum_probs=29.3
Q ss_pred cccccccccccCCCc-eEEecCCCcccHHHHHHHHh----cCCCCCCCccccCC
Q 018233 299 ETCAICLEDYQDGEK-LKVLSCKHEFHASCVDSWLT----KWGTFCPVCKHDMR 347 (359)
Q Consensus 299 ~~C~ICLe~f~~~~~-vr~LpC~H~FH~~CI~~Wl~----~~~~~CPlCR~~i~ 347 (359)
..--||-..+..+.. |.---|.--||..|+.---. .....||.|+....
T Consensus 10 ~~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~~ 63 (75)
T 3kqi_A 10 PVYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTHG 63 (75)
T ss_dssp CEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHHC
T ss_pred eeEEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcccCC
Confidence 344489887654332 22224788999999853211 12346999976543
No 189
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.76 E-value=32 Score=25.28 Aligned_cols=33 Identities=18% Similarity=0.419 Sum_probs=23.2
Q ss_pred CCcccccccccccCCCc-eEEecCCCcccHHHHH
Q 018233 297 GGETCAICLEDYQDGEK-LKVLSCKHEFHASCVD 329 (359)
Q Consensus 297 ~~~~C~ICLe~f~~~~~-vr~LpC~H~FH~~CI~ 329 (359)
+...|.+|-..|..-.. -.---||++|+..|..
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 45689999999865431 1112489999999954
No 190
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=27.53 E-value=27 Score=22.84 Aligned_cols=9 Identities=22% Similarity=0.069 Sum_probs=3.7
Q ss_pred hhccCCCCC
Q 018233 252 VAFITPRPW 260 (359)
Q Consensus 252 i~~~~~r~r 260 (359)
++++.+|++
T Consensus 30 ~~~~~RRRr 38 (44)
T 2l2t_A 30 FAVYVRRKS 38 (44)
T ss_dssp HHHHHHTTC
T ss_pred HHHHhhhhh
Confidence 344444433
No 191
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=27.48 E-value=28 Score=26.89 Aligned_cols=27 Identities=30% Similarity=0.554 Sum_probs=12.0
Q ss_pred cccccccccccCCCceEEecCCCcccHHH
Q 018233 299 ETCAICLEDYQDGEKLKVLSCKHEFHASC 327 (359)
Q Consensus 299 ~~C~ICLe~f~~~~~vr~LpC~H~FH~~C 327 (359)
..|+-|-+.+...+.++ .-+..||.+|
T Consensus 4 ~~C~~C~~~I~~~~~~~--a~~~~wH~~C 30 (114)
T 1j2o_A 4 LTCGGCQQNIGDRYFLK--AIDQYWHEDC 30 (114)
T ss_dssp BCBSSSCSCBCSSEEEE--CSSSEECTTT
T ss_pred CCCcCCCCeeCCcEEEE--ECchhHHHhc
Confidence 34555555544332121 2345555555
No 192
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=26.29 E-value=31 Score=27.08 Aligned_cols=39 Identities=21% Similarity=0.427 Sum_probs=28.5
Q ss_pred ccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCC
Q 018233 300 TCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRN 348 (359)
Q Consensus 300 ~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (359)
.|..|-+.+...+.+. ..-++.||.+|+ .|-.|+..|..
T Consensus 68 ~C~~C~~~I~~~e~~~-~a~~~~~H~~CF---------~C~~C~~~L~~ 106 (131)
T 2xjy_A 68 LCASCDKRIRAYEMTM-RVKDKVYHLECF---------KCAACQKHFCV 106 (131)
T ss_dssp ECTTTCCEECTTSEEE-EETTEEEEGGGC---------BCTTTCCBCCT
T ss_pred ChhhcCCccCccceeE-eeCCceECccCc---------ccCCCCCCCCC
Confidence 7999988887655332 235889999984 48889888753
No 193
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=26.20 E-value=23 Score=25.26 Aligned_cols=21 Identities=10% Similarity=0.210 Sum_probs=10.2
Q ss_pred eeeehhHHHHHHHhhhhccCC
Q 018233 237 MVSVFSLIVVFALFAVAFITP 257 (359)
Q Consensus 237 ~IsfiillvIiavlli~~~~~ 257 (359)
++.-+..+++++.+.+++.++
T Consensus 13 vlGg~~~lll~~glcI~ccvk 33 (70)
T 2klu_A 13 VLGGVAGLLLFIGLGIFFSVR 33 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHhhH
Confidence 333344445555555555553
No 194
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=26.13 E-value=38 Score=28.06 Aligned_cols=40 Identities=23% Similarity=0.568 Sum_probs=26.7
Q ss_pred cccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCC
Q 018233 299 ETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRN 348 (359)
Q Consensus 299 ~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~ 348 (359)
..|..|-+.+..++.+. ..-++.||.+|+ .|-.|+..|..
T Consensus 66 ~~C~~C~~~I~~~~~v~-~a~~~~~H~~CF---------~C~~C~~~L~~ 105 (169)
T 2rgt_A 66 TKCAACQLGIPPTQVVR-RAQDFVYHLHCF---------ACVVCKRQLAT 105 (169)
T ss_dssp CBCTTTCCBCCTTSEEE-EETTEEEEGGGC---------BCTTTCCBCCT
T ss_pred ccccccccccCCCcEEE-EcCCceEeeCCC---------cCCCCCCCCCC
Confidence 46777877776655332 235778888885 48888777753
No 195
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=26.03 E-value=27 Score=30.51 Aligned_cols=34 Identities=18% Similarity=0.524 Sum_probs=23.8
Q ss_pred CCcccccccccccCCCc-eEEecCCCcccHHHHHH
Q 018233 297 GGETCAICLEDYQDGEK-LKVLSCKHEFHASCVDS 330 (359)
Q Consensus 297 ~~~~C~ICLe~f~~~~~-vr~LpC~H~FH~~CI~~ 330 (359)
+...|.+|-..|..-.. ..---||++||..|...
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 35799999999875431 11124999999999643
No 196
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=25.87 E-value=28 Score=30.66 Aligned_cols=34 Identities=18% Similarity=0.441 Sum_probs=24.5
Q ss_pred CCcccccccccccCCCc-eEEecCCCcccHHHHHH
Q 018233 297 GGETCAICLEDYQDGEK-LKVLSCKHEFHASCVDS 330 (359)
Q Consensus 297 ~~~~C~ICLe~f~~~~~-vr~LpC~H~FH~~CI~~ 330 (359)
+.+.|.+|-..|..-.. ..--.||++|+..|...
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 45699999999876532 11224999999999754
No 197
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=25.75 E-value=20 Score=21.09 Aligned_cols=11 Identities=27% Similarity=0.875 Sum_probs=8.3
Q ss_pred CCCCccccCCC
Q 018233 338 FCPVCKHDMRN 348 (359)
Q Consensus 338 ~CPlCR~~i~~ 348 (359)
.||+|+...++
T Consensus 5 ~CpvCk~q~Pd 15 (28)
T 2jvx_A 5 CCPKCQYQAPD 15 (28)
T ss_dssp ECTTSSCEESS
T ss_pred cCccccccCcC
Confidence 49999887654
No 198
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=25.73 E-value=28 Score=22.69 Aligned_cols=8 Identities=13% Similarity=0.372 Sum_probs=3.3
Q ss_pred hhccCCCC
Q 018233 252 VAFITPRP 259 (359)
Q Consensus 252 i~~~~~r~ 259 (359)
++++.+|+
T Consensus 31 ~~~~~RRr 38 (44)
T 2ks1_B 31 IGLFMRRR 38 (44)
T ss_dssp HHHHHHTT
T ss_pred HHHHhhhh
Confidence 33444443
No 199
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=25.64 E-value=11 Score=26.44 Aligned_cols=44 Identities=34% Similarity=0.654 Sum_probs=25.7
Q ss_pred CCcccccccccccCCCceEEec--CC-CcccHHHHHHHHhc---CCCCCCCccc
Q 018233 297 GGETCAICLEDYQDGEKLKVLS--CK-HEFHASCVDSWLTK---WGTFCPVCKH 344 (359)
Q Consensus 297 ~~~~C~ICLe~f~~~~~vr~Lp--C~-H~FH~~CI~~Wl~~---~~~~CPlCR~ 344 (359)
+...| ||-... .++-|.-=- |. .-||..|+. |.. ..-.||.|+.
T Consensus 10 e~~yC-~C~~~~-~g~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 10 EPTYC-LCNQVS-YGEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CCEET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CCcEE-ECCCCC-CCCeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 34566 898863 343221112 44 789999997 222 1335999964
No 200
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=24.56 E-value=32 Score=24.47 Aligned_cols=48 Identities=23% Similarity=0.315 Sum_probs=30.1
Q ss_pred CCcccccccccccCCC-ceEEecCCCcccHHHHHHHHh---cCCCCCCCcccc
Q 018233 297 GGETCAICLEDYQDGE-KLKVLSCKHEFHASCVDSWLT---KWGTFCPVCKHD 345 (359)
Q Consensus 297 ~~~~C~ICLe~f~~~~-~vr~LpC~H~FH~~CI~~Wl~---~~~~~CPlCR~~ 345 (359)
....| ||-..+..++ .|.--.|..-||..|+.---. .....||.|+..
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 34578 7988766554 333334888999999853211 123469999754
No 201
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=23.64 E-value=34 Score=28.76 Aligned_cols=47 Identities=13% Similarity=0.272 Sum_probs=28.9
Q ss_pred CCcccccccccccCCCceEEecCCCcccHHHHHHHHhcCCCCCCCccccCCCC
Q 018233 297 GGETCAICLEDYQDGEKLKVLSCKHEFHASCVDSWLTKWGTFCPVCKHDMRNN 349 (359)
Q Consensus 297 ~~~~C~ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~~~~~~CPlCR~~i~~~ 349 (359)
.-..|..|-..+.... . ..=+..|+..|... .....|..|...|...
T Consensus 86 ~CF~C~~C~~~L~~~~-f--~~~g~~yC~~~y~~---~f~~kC~~C~~~I~~~ 132 (182)
T 2jtn_A 86 KCLKCSDCHVPLAERC-F--SRGESVYCKDDFFK---RFGTKCAACQLGIPPT 132 (182)
T ss_dssp STTSCTTTCCCCSSCC-E--EETTEEECHHHHHH---TTSCCCTTTCCCCCSS
T ss_pred ccCccCCCCCccCCCc-e--eECCEeeecCcccc---ccccccccCCCccCCC
Confidence 3457777777765543 1 12356777777654 2233599998888754
No 202
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=23.09 E-value=9.9 Score=25.42 Aligned_cols=42 Identities=17% Similarity=0.450 Sum_probs=24.5
Q ss_pred cccccccCCCceEEecCCCcccHHHHHHHHh--cCCCCCCCccc
Q 018233 303 ICLEDYQDGEKLKVLSCKHEFHASCVDSWLT--KWGTFCPVCKH 344 (359)
Q Consensus 303 ICLe~f~~~~~vr~LpC~H~FH~~CI~~Wl~--~~~~~CPlCR~ 344 (359)
||-.....+.-|.--.|+.-||..|+.-=-. .....||.|+.
T Consensus 8 ~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCTTCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCCCCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 6766654323233224788999999853211 12346998864
No 203
>1iko_P Ephrin-B2; greek KEY, glycosylation, signaling protein; HET: NAG MAN; 1.92A {Mus musculus} SCOP: b.6.1.5
Probab=23.00 E-value=25 Score=30.07 Aligned_cols=10 Identities=70% Similarity=1.065 Sum_probs=8.5
Q ss_pred ceEEEecCcc
Q 018233 3 PYYYISTSRG 12 (359)
Q Consensus 3 ~~~~~~~~~~ 12 (359)
.|||||||-|
T Consensus 105 ~YY~IstS~G 114 (178)
T 1iko_P 105 DYYIISTSNG 114 (178)
T ss_dssp EEEEECCCCB
T ss_pred ceEEEecCCc
Confidence 5999999875
No 204
>2k5f_A Ferrous iron transport protein A; SH3-like, alpha+beta, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum}
Probab=20.07 E-value=30 Score=26.73 Aligned_cols=11 Identities=36% Similarity=0.852 Sum_probs=7.1
Q ss_pred ccccccccccc
Q 018233 18 GWRWGWGWGRR 28 (359)
Q Consensus 18 ~~~~~~~~~~~ 28 (359)
+-||-||||++
T Consensus 86 ~~~~~~~~~~~ 96 (105)
T 2k5f_A 86 GFRRRHRFGKR 96 (105)
T ss_dssp CSSCCCCSCSC
T ss_pred hhhhhhcccch
Confidence 45666677765
Done!