BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018235
(359 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 92/189 (48%), Gaps = 21/189 (11%)
Query: 150 GGSGTPILQLR---KVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESE 206
GG G+ ++ K+ H+G VNR R M QNPHI A+ + V V+D H
Sbjct: 108 GGFGSVTGKIECEIKINHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKH-------- 159
Query: 207 TIVGQGAPQVSNQ-SPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATW 265
P S + +P ++ GH+ EGY + WN +G L++ + + LW+ +
Sbjct: 160 ----PAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKE 215
Query: 266 N--VDPNP-FIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS--FKAHN 320
VD F GHSA VED+ W +F S + D + IWDTR ++ S AH
Sbjct: 216 GKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHT 275
Query: 321 ADVNVISWN 329
A+VN +S+N
Sbjct: 276 AEVNCLSFN 284
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 59/152 (38%), Gaps = 30/152 (19%)
Query: 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPL 222
AH VN + + I A+ + V +WDLR+ + L
Sbjct: 273 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL--------------------KLKL 312
Query: 223 VKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLW--------EPASDATWNVDPNPFI- 273
F HKDE + + W+P L + + + +W + A DA FI
Sbjct: 313 HTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIH 372
Query: 274 -GHSASVEDLQWSPTEPDVFASCSVDGHIAIW 304
GH+A + D W+P EP V S S D + IW
Sbjct: 373 GGHTAKISDFSWNPNEPWVICSVSEDNIMQIW 404
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 65/181 (35%), Gaps = 34/181 (18%)
Query: 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSP 221
H V + + + S AD + +WD RS+ S S
Sbjct: 226 TGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSN----------------TTSKPSH 269
Query: 222 LVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVED 281
LV H E + +NP + L TG + + LW+ + + + F H +
Sbjct: 270 LVD--AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN---LKLKLHTFESHKDEIFQ 324
Query: 282 LQWSPTEPDVFASCSVDGHIAIWD-TRVGKSA------------LTSFKAHNADVNVISW 328
+ WSP + AS D + +WD +++G+ L H A ++ SW
Sbjct: 325 VHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSW 384
Query: 329 N 329
N
Sbjct: 385 N 385
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 88.2 bits (217), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 87/175 (49%), Gaps = 18/175 (10%)
Query: 161 KVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQ- 219
K+ H+G VNR R M QNP I A+ + V V+D H P S +
Sbjct: 120 KINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKH------------PSKPDPSGEC 167
Query: 220 SPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWN--VDPNP-FIGHS 276
+P ++ GH+ EGY + WNP +G L++ + I LW+ ++ VD F GH+
Sbjct: 168 NPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHT 227
Query: 277 ASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALT--SFKAHNADVNVISWN 329
A VED+ W +F S + D + IWDTR ++ S AH A+VN +S+N
Sbjct: 228 AVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFN 282
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 61/152 (40%), Gaps = 30/152 (19%)
Query: 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPL 222
AH VN + + I A+ + V +WDLR+ + L
Sbjct: 271 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL--------------------KLKL 310
Query: 223 VKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPAS----DATWNVDPNP----FI- 273
F HKDE + + W+P L + + + +W+ + + + + P FI
Sbjct: 311 HSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIH 370
Query: 274 -GHSASVEDLQWSPTEPDVFASCSVDGHIAIW 304
GH+A + D W+P EP V S S D + +W
Sbjct: 371 GGHTAKISDFSWNPNEPWVICSVSEDNIMQVW 402
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/181 (20%), Positives = 64/181 (35%), Gaps = 34/181 (18%)
Query: 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSP 221
H V + + + S AD + +WD RS+ + P
Sbjct: 224 TGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSN------------------NTSKP 265
Query: 222 LVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVED 281
H E + +NP + L TG + + LW+ + + + F H +
Sbjct: 266 SHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN---LKLKLHSFESHKDEIFQ 322
Query: 282 LQWSPTEPDVFASCSVDGHIAIWD-TRVGKSA------------LTSFKAHNADVNVISW 328
+QWSP + AS D + +WD +++G+ L H A ++ SW
Sbjct: 323 VQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSW 382
Query: 329 N 329
N
Sbjct: 383 N 383
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 91/189 (48%), Gaps = 21/189 (11%)
Query: 150 GGSGTPILQLR---KVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESE 206
GG G+ ++ K+ H+G VNR R QNPHI A+ + V V+D H
Sbjct: 108 GGFGSVTGKIECEIKINHEGEVNRARYXPQNPHIIATKTPSSDVLVFDYTKH-------- 159
Query: 207 TIVGQGAPQVSNQ-SPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATW 265
P S + +P ++ GH+ EGY + WN +G L++ + + LW+ +
Sbjct: 160 ----PAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKE 215
Query: 266 N--VDPNP-FIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS--FKAHN 320
VD F GHSA VED+ W +F S + D + IWDTR ++ S AH
Sbjct: 216 GKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHT 275
Query: 321 ADVNVISWN 329
A+VN +S+N
Sbjct: 276 AEVNCLSFN 284
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 58/152 (38%), Gaps = 30/152 (19%)
Query: 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPL 222
AH VN + + I A+ + V +WDLR+ + L
Sbjct: 273 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL--------------------KLKL 312
Query: 223 VKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLW--------EPASDATWNVDPNPFI- 273
F HKDE + + W+P L + + + +W + A DA FI
Sbjct: 313 HTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIH 372
Query: 274 -GHSASVEDLQWSPTEPDVFASCSVDGHIAIW 304
GH+A + D W+P EP V S S D IW
Sbjct: 373 GGHTAKISDFSWNPNEPWVICSVSEDNIXQIW 404
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 65/181 (35%), Gaps = 34/181 (18%)
Query: 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSP 221
H V + + + S AD + +WD RS+ S S
Sbjct: 226 TGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSN----------------TTSKPSH 269
Query: 222 LVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVED 281
LV H E + +NP + L TG + + LW+ + + + F H +
Sbjct: 270 LVD--AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN---LKLKLHTFESHKDEIFQ 324
Query: 282 LQWSPTEPDVFASCSVDGHIAIWD-TRVGKSA------------LTSFKAHNADVNVISW 328
+ WSP + AS D + +WD +++G+ L H A ++ SW
Sbjct: 325 VHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSW 384
Query: 329 N 329
N
Sbjct: 385 N 385
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 84/176 (47%), Gaps = 20/176 (11%)
Query: 161 KVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQ- 219
K+ H+G VNR R M QN + A+ + V V+D H P+ S +
Sbjct: 126 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKH------------PSKPEPSGEC 173
Query: 220 SPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWE----PASDATWNVDPNPFIGH 275
P ++ GH+ EGY + WNP G L++ + I LW+ P + N F GH
Sbjct: 174 QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDA-KNIFTGH 232
Query: 276 SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS--FKAHNADVNVISWN 329
+A VED+ W +F S + D + IWDTR ++ S AH A+VN +S+N
Sbjct: 233 TAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN 288
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 63/152 (41%), Gaps = 30/152 (19%)
Query: 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPL 222
AH VN + + I A+ + V +WDLR+ + L
Sbjct: 277 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL--------------------KLKL 316
Query: 223 VKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPAS----DATWNVDPNP----FI- 273
F HKDE + + W+P L + + +++W+ + +T + + P FI
Sbjct: 317 HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH 376
Query: 274 -GHSASVEDLQWSPTEPDVFASCSVDGHIAIW 304
GH+A + D W+P EP + S S D + +W
Sbjct: 377 GGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 408
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/181 (19%), Positives = 64/181 (35%), Gaps = 34/181 (18%)
Query: 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSP 221
H V + + + S AD + +WD R++ + P
Sbjct: 230 TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNN------------------NTSKP 271
Query: 222 LVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVED 281
H E + +NP + L TG + + LW+ + + + F H +
Sbjct: 272 SHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN---LKLKLHSFESHKDEIFQ 328
Query: 282 LQWSPTEPDVFASCSVDGHIAIWD-TRVGKSALTS------------FKAHNADVNVISW 328
+QWSP + AS D + +WD +++G+ T H A ++ SW
Sbjct: 329 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW 388
Query: 329 N 329
N
Sbjct: 389 N 389
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 84/176 (47%), Gaps = 20/176 (11%)
Query: 161 KVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQ- 219
K+ H+G VNR R M QN + A+ + V V+D H P+ S +
Sbjct: 124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKH------------PSKPEPSGEC 171
Query: 220 SPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWE----PASDATWNVDPNPFIGH 275
P ++ GH+ EGY + WNP G L++ + I LW+ P + N F GH
Sbjct: 172 QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDA-KNIFTGH 230
Query: 276 SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS--FKAHNADVNVISWN 329
+A VED+ W +F S + D + IWDTR ++ S AH A+VN +S+N
Sbjct: 231 TAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN 286
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 63/152 (41%), Gaps = 30/152 (19%)
Query: 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPL 222
AH VN + + I A+ + V +WDLR+ + L
Sbjct: 275 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL--------------------KLKL 314
Query: 223 VKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPAS----DATWNVDPNP----FI- 273
F HKDE + + W+P L + + +++W+ + +T + + P FI
Sbjct: 315 HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH 374
Query: 274 -GHSASVEDLQWSPTEPDVFASCSVDGHIAIW 304
GH+A + D W+P EP + S S D + +W
Sbjct: 375 GGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 406
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 36/181 (19%), Positives = 64/181 (35%), Gaps = 34/181 (18%)
Query: 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSP 221
H V + + + S AD + +WD R++ + P
Sbjct: 228 TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNN------------------NTSKP 269
Query: 222 LVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVED 281
H E + +NP + L TG + + LW+ + + + F H +
Sbjct: 270 SHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN---LKLKLHSFESHKDEIFQ 326
Query: 282 LQWSPTEPDVFASCSVDGHIAIWD-TRVGKSALTS------------FKAHNADVNVISW 328
+QWSP + AS D + +WD +++G+ T H A ++ SW
Sbjct: 327 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW 386
Query: 329 N 329
N
Sbjct: 387 N 387
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 84/176 (47%), Gaps = 20/176 (11%)
Query: 161 KVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQ- 219
K+ H+G VNR R M QN + A+ + V V+D H P+ S +
Sbjct: 128 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKH------------PSKPEPSGEC 175
Query: 220 SPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWE----PASDATWNVDPNPFIGH 275
P ++ GH+ EGY + WNP G L++ + I LW+ P + N F GH
Sbjct: 176 QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDA-KNIFTGH 234
Query: 276 SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS--FKAHNADVNVISWN 329
+A VED+ W +F S + D + IWDTR ++ S AH A+VN +S+N
Sbjct: 235 TAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN 290
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 63/152 (41%), Gaps = 30/152 (19%)
Query: 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPL 222
AH VN + + I A+ + V +WDLR+ + L
Sbjct: 279 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL--------------------KLKL 318
Query: 223 VKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPAS----DATWNVDPNP----FI- 273
F HKDE + + W+P L + + +++W+ + +T + + P FI
Sbjct: 319 HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH 378
Query: 274 -GHSASVEDLQWSPTEPDVFASCSVDGHIAIW 304
GH+A + D W+P EP + S S D + +W
Sbjct: 379 GGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 410
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 63/163 (38%), Gaps = 23/163 (14%)
Query: 187 TGHVQV-----WDL--RSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239
TGH V W L S ++A+ + ++ + P H E + +NP
Sbjct: 232 TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNP 291
Query: 240 ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG 299
+ L TG + + LW+ + + + F H + +QWSP + AS D
Sbjct: 292 YSEFILATGSADKTVALWDLRN---LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDR 348
Query: 300 HIAIWD-TRVGKSALTS------------FKAHNADVNVISWN 329
+ +WD +++G+ T H A ++ SWN
Sbjct: 349 RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN 391
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
Query: 227 GHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPF-IGHSASVEDLQWS 285
GHK + + P RL+TG + LW+ + ++ + F GH+A V L +
Sbjct: 155 GHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSIN 214
Query: 286 PTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISW 328
++F S S D + +WD R+ A+ ++ H D+N + +
Sbjct: 215 SLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKF 257
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 7/46 (15%)
Query: 274 GHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAH 319
GHS V L W+P E + S S DG + +W+ ALTS K H
Sbjct: 64 GHSGKVYSLDWTP-EKNWIVSASQDGRLIVWN------ALTSQKTH 102
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 24/129 (18%)
Query: 185 ADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG- 243
+D+G V++W+L E+ET++ + KF ++ + + +++G
Sbjct: 100 SDSGAVELWELD-------ENETLI------------VSKFCKYEHDDIVSTVSVLSSGT 140
Query: 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAI 303
+ V+G + CI +W D V + + H+A V + SP + VF SCS D I +
Sbjct: 141 QAVSGSKDICIKVW----DLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILL 196
Query: 304 WDTRVGKSA 312
WDTR K A
Sbjct: 197 WDTRCPKPA 205
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 48/126 (38%), Gaps = 6/126 (4%)
Query: 215 QVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFI- 273
+V PLV GH I W P + +G + + +WE P I
Sbjct: 69 RVDKNVPLVX--GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVIT 126
Query: 274 --GHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALT-SFKAHNADVNVISWNR 330
GH+ V + W PT +V S D I +WD G + LT H + + W+R
Sbjct: 127 LEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR 186
Query: 331 CWLAVC 336
+C
Sbjct: 187 DGALIC 192
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPT---EPDVFASC 295
P R +G C++ I LW+ D W + HS V D+ W+P+ ASC
Sbjct: 176 PNYIKRFASGGCDNLIKLWKEEEDGQWK-EEQKLEAHSDWVRDVAWAPSIGLPTSTIASC 234
Query: 296 SVDGHIAIW 304
S DG + IW
Sbjct: 235 SQDGRVFIW 243
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 8/115 (6%)
Query: 219 QSPLVKFGGHKDEGYAIDW-NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSA 277
Q + GH+ + + W +P+ L + + + +W + TW + GH +
Sbjct: 47 QILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWRE-ENGTWE-KSHEHAGHDS 104
Query: 278 SVEDLQWSPTEPDVFASC-SVDGHIAIWDTRVGKSALTSFK---AHNADVNVISW 328
SV + W+P + + +C S DG I++ T G+ K AH N +SW
Sbjct: 105 SVNSVCWAPHDYGLILACGSSDGAISLL-TYTGEGQWEVKKINNAHTIGCNAVSW 158
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 226 GGHKDEGYAIDWNPITTGRLVT--GDCNSCIYLWEPASDA---TWNVDPNPFIGHSASVE 280
G H Y I W +T G L T GD ++ +P SD T+++ + HS V
Sbjct: 249 GFHSRTIYDIAWCQLT-GALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVN 307
Query: 281 DLQWSPTEPDVFASCSVDGHIAIW 304
+ W+P EP + ASCS DG +A W
Sbjct: 308 CVAWNPKEPGLLASCSDDGEVAFW 331
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 48/126 (38%), Gaps = 6/126 (4%)
Query: 215 QVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFI- 273
+V PLV GH I W P + +G + + +WE P I
Sbjct: 69 RVDKNVPLV--CGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVIT 126
Query: 274 --GHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALT-SFKAHNADVNVISWNR 330
GH+ V + W PT +V S D I +WD G + LT H + + W+R
Sbjct: 127 LEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR 186
Query: 331 CWLAVC 336
+C
Sbjct: 187 DGALIC 192
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 71/160 (44%), Gaps = 26/160 (16%)
Query: 170 RIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHK 229
R+ +++ N +I +S + +GH+ D+R +AE + GH
Sbjct: 202 RVGSLSWNSYILSSGSRSGHIHHHDVR-----VAEHH---------------VATLSGHS 241
Query: 230 DEGYAIDWNPITTGR-LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTE 288
E + W P GR L +G ++ + +W A V F H +V+ + W P +
Sbjct: 242 QEVCGLRWAP--DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ 299
Query: 289 PDVFAS--CSVDGHIAIWDTRVGKSALTSFKAHNADVNVI 326
+V A+ + D HI IW+ G + L++ AH+ +++
Sbjct: 300 SNVLATGGGTSDRHIRIWNVCSG-ACLSAVDAHSQVCSIL 338
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 7/84 (8%)
Query: 245 LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIW 304
L G ++ + LW D HSA V L W+ + +S S GHI
Sbjct: 173 LAVGTSSAEVQLW----DVQQQKRLRNMTSHSARVGSLSWNSY---ILSSGSRSGHIHHH 225
Query: 305 DTRVGKSALTSFKAHNADVNVISW 328
D RV + + + H+ +V + W
Sbjct: 226 DVRVAEHHVATLSGHSQEVCGLRW 249
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 71/160 (44%), Gaps = 26/160 (16%)
Query: 170 RIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHK 229
R+ +++ N +I +S + +GH+ D+R +AE + GH
Sbjct: 191 RVGSLSWNSYILSSGSRSGHIHHHDVR-----VAEHH---------------VATLSGHS 230
Query: 230 DEGYAIDWNPITTGR-LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTE 288
E + W P GR L +G ++ + +W A V F H +V+ + W P +
Sbjct: 231 QEVCGLRWAP--DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ 288
Query: 289 PDVFAS--CSVDGHIAIWDTRVGKSALTSFKAHNADVNVI 326
+V A+ + D HI IW+ G + L++ AH+ +++
Sbjct: 289 SNVLATGGGTSDRHIRIWNVCSG-ACLSAVDAHSQVCSIL 327
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 7/84 (8%)
Query: 245 LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIW 304
L G ++ + LW D HSA V L W+ + +S S GHI
Sbjct: 162 LAVGTSSAEVQLW----DVQQQKRLRNMTSHSARVGSLSWNSY---ILSSGSRSGHIHHH 214
Query: 305 DTRVGKSALTSFKAHNADVNVISW 328
D RV + + + H+ +V + W
Sbjct: 215 DVRVAEHHVATLSGHSQEVCGLRW 238
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 71/160 (44%), Gaps = 26/160 (16%)
Query: 170 RIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHK 229
R+ +++ N +I +S + +GH+ D+R +AE + GH
Sbjct: 111 RVGSLSWNSYILSSGSRSGHIHHHDVR-----VAEHH---------------VATLSGHS 150
Query: 230 DEGYAIDWNPITTGR-LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTE 288
E + W P GR L +G ++ + +W A V F H +V+ + W P +
Sbjct: 151 QEVCGLRWAP--DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ 208
Query: 289 PDVFAS--CSVDGHIAIWDTRVGKSALTSFKAHNADVNVI 326
+V A+ + D HI IW+ G + L++ AH+ +++
Sbjct: 209 SNVLATGGGTSDRHIRIWNVCSG-ACLSAVDAHSQVCSIL 247
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 7/84 (8%)
Query: 245 LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIW 304
L G ++ + LW D HSA V L W+ + +S S GHI
Sbjct: 82 LAVGTSSAEVQLW----DVQQQKRLRNMTSHSARVGSLSWNSY---ILSSGSRSGHIHHH 134
Query: 305 DTRVGKSALTSFKAHNADVNVISW 328
D RV + + + H+ +V + W
Sbjct: 135 DVRVAEHHVATLSGHSQEVCGLRW 158
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Query: 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWS-PTEPDVFASCSVDGHIA 302
RL T + I ++E + +D GH V + W+ P + ASCS DG +
Sbjct: 23 RLATCSSDKTIKIFEVEGETHKLIDT--LTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80
Query: 303 IWDTRVGK-SALTSFKAHNADVNVISW 328
IW G+ S + H+A VN + W
Sbjct: 81 IWKEENGRWSQIAVHAVHSASVNSVQW 107
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTE--PDVFASCSVDGHI 301
+ VTG ++ + +W+ SDA V + GHS V D+ WSPT AS S D
Sbjct: 172 KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC 231
Query: 302 AIW 304
IW
Sbjct: 232 IIW 234
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 275 HSASVEDLQWSPTEPD-VFASCSVDGHIAIWDTRV-GKSALTSFKAHNADVNVISW 328
HSASV +QW+P E + S DG +++ + + G ++ AH VN SW
Sbjct: 98 HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASW 153
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Query: 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWS-PTEPDVFASCSVDGHIA 302
RL T + I ++E + +D GH V + W+ P + ASCS DG +
Sbjct: 25 RLATCSSDKTIKIFEVEGETHKLIDT--LTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82
Query: 303 IWDTRVGK-SALTSFKAHNADVNVISW 328
IW G+ S + H+A VN + W
Sbjct: 83 IWKEENGRWSQIAVHAVHSASVNSVQW 109
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTE--PDVFASCSVDGHI 301
+ VTG ++ + +W+ SDA V + GHS V D+ WSPT AS S D
Sbjct: 174 KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC 233
Query: 302 AIW 304
IW
Sbjct: 234 IIW 236
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 275 HSASVEDLQWSPTEPD-VFASCSVDGHIAIWDTRV-GKSALTSFKAHNADVNVISW 328
HSASV +QW+P E + S DG +++ + + G ++ AH VN SW
Sbjct: 100 HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASW 155
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Query: 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWS-PTEPDVFASCSVDGHIA 302
RL T + I ++E + +D GH V + W+ P + ASCS DG +
Sbjct: 23 RLATCSSDKTIKIFEVEGETHKLIDT--LTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80
Query: 303 IWDTRVGK-SALTSFKAHNADVNVISW 328
IW G+ S + H+A VN + W
Sbjct: 81 IWKEENGRWSQIAVHAVHSASVNSVQW 107
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTE--PDVFASCSVDGHI 301
+ VTG ++ + +W+ SDA V + GHS V D+ WSPT AS S D
Sbjct: 172 KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC 231
Query: 302 AIW 304
IW
Sbjct: 232 IIW 234
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 275 HSASVEDLQWSPTEPD-VFASCSVDGHIAIWDTRV-GKSALTSFKAHNADVNVISW 328
HSASV +QW+P E + S DG +++ + + G ++ AH VN SW
Sbjct: 98 HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASW 153
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Query: 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWS-PTEPDVFASCSVDGHIA 302
R+ T + I ++E + +D GH V + W+ P + ASCS DG +
Sbjct: 23 RMATCSSDKTIKIFEVEGETHKLIDT--LTGHEGPVWRVDWAHPKFGTILASCSYDGKVM 80
Query: 303 IWDTRVGK-SALTSFKAHNADVNVISW 328
IW G+ S + H+A VN + W
Sbjct: 81 IWKEENGRWSQIAVHAVHSASVNSVQW 107
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTE--PDVFASCSVDGHI 301
+ VTG ++ + +W+ SDA V + GHS V D+ WSPT AS S D
Sbjct: 172 KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTC 231
Query: 302 AIW 304
IW
Sbjct: 232 IIW 234
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 275 HSASVEDLQWSPTEPD-VFASCSVDGHIAIWDTRV-GKSALTSFKAHNADVNVISW 328
HSASV +QW+P E + S DG +++ + + G ++ AH VN SW
Sbjct: 98 HSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASW 153
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 245 LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIW 304
L TG + + LW D N GH+ SV ++SP + ++ ASCS DG + +W
Sbjct: 723 LATGSNDFFLKLW----DLNQKECRNTMFGHTNSVNHCRFSP-DDELLASCSADGTLRLW 777
Query: 305 DTR 307
D R
Sbjct: 778 DVR 780
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 287 TEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVN 324
++ A+CS D + IWD+ GK T + H+ VN
Sbjct: 674 SDDSYIATCSADKKVKIWDSATGKLVHT-YDEHSEQVN 710
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 245 LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIW 304
L TG + + LW D N GH+ SV ++SP + ++ ASCS DG + +W
Sbjct: 716 LATGSNDFFLKLW----DLNQKECRNTMFGHTNSVNHCRFSP-DDELLASCSADGTLRLW 770
Query: 305 DTR 307
D R
Sbjct: 771 DVR 773
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 287 TEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVN 324
++ A+CS D + IWD+ GK T + H+ VN
Sbjct: 667 SDDSYIATCSADKKVKIWDSATGKLVHT-YDEHSEQVN 703
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 270 NPFIGHSASVEDLQWS-PTEPDVFASCSVDGHIAIWDTRVGK-SALTSFKAHNADVNVIS 327
+ GH V + W+ P + ASCS DG + IW G+ S + H+A VN +
Sbjct: 47 DTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQ 106
Query: 328 W 328
W
Sbjct: 107 W 107
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTE--PDVFASCSVDGHI 301
+ VTG ++ + +W+ SDA V + GHS V D+ WSPT AS S D
Sbjct: 172 KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVSQDRTC 231
Query: 302 AIW 304
IW
Sbjct: 232 IIW 234
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 275 HSASVEDLQWSPTE--PDVFASCSVDGHIAIWDTRV-GKSALTSFKAHNADVNVISW 328
HSASV +QW+P E P + + S DG +++ + + G ++ AH VN SW
Sbjct: 98 HSASVNSVQWAPHEYGPXLLVASS-DGKVSVVEFKENGTTSPIIIDAHAIGVNSASW 153
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 245 LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIW 304
L TG + + LW D N GH+ SV ++SP + + ASCS DG + +W
Sbjct: 722 LATGSSDCFLKLW----DLNQKECRNTMFGHTNSVNHCRFSPDDK-LLASCSADGTLKLW 776
Query: 305 D 305
D
Sbjct: 777 D 777
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 54/114 (47%), Gaps = 12/114 (10%)
Query: 234 AIDWNPITTGRLVTGDCNSCIYLWE---PASDATWNVDPNPFIG------HSASVEDLQW 284
+D P+ +++G + I L++ + + + IG H SVE +QW
Sbjct: 48 TLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQW 107
Query: 285 SPTEPDVFASCSVDGHIAIWDTRVGKSA-LTSFK--AHNADVNVISWNRCWLAV 335
P + +F S S D + +WDT ++A + +F+ ++ ++ +S C +AV
Sbjct: 108 YPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAV 161
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 21/48 (43%)
Query: 274 GHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNA 321
GH + + WSP + A+ S D + +WD R L + HN
Sbjct: 184 GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNG 231
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 65/157 (41%), Gaps = 37/157 (23%)
Query: 180 ICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239
I +SW T +++WDLR+ + +F GH+ E Y++ ++P
Sbjct: 92 ISSSWDKT--LRLWDLRTG---------------------TTYKRFVGHQSEVYSVAFSP 128
Query: 240 ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDV-------- 291
++++ I LW + ++ HS V +++SP
Sbjct: 129 -DNRQILSAGAEREIKLWNILGECKFSSAEKE--NHSDWVSCVRYSPIMKSANKVQPFAP 185
Query: 292 -FASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVIS 327
FAS DG + +W+T +FKAH ++VN +S
Sbjct: 186 YFASVGWDGRLKVWNTNF--QIRYTFKAHESNVNHLS 220
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 34.7 bits (78), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Query: 215 QVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIG 274
Q++ ++P K GH +++N T L++ + + +W + + N F G
Sbjct: 233 QITEKTPTGKLIGHHGPISVLEFND-TNKLLLSASDDGTLRIWHGGNGNSQNC----FYG 287
Query: 275 HSASVEDLQWSPTEPDVFASCSVDGHIAIWDTR 307
HS S+ W D SCS+DG + +W +
Sbjct: 288 HSQSIVSASW--VGDDKVISCSMDGSVRLWSLK 318
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 272 FIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNV-ISWNR 330
FIGH++++ L SP + + AS DG I +W+ K A+ + A + ++ S NR
Sbjct: 192 FIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNL-AAKKAMYTLSAQDEVFSLAFSPNR 249
Query: 331 CWLAVC 336
WLA
Sbjct: 250 YWLAAA 255
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 272 FIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNV-ISWNR 330
FIGH++++ L SP + + AS DG I +W+ K A+ + A + ++ S NR
Sbjct: 192 FIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNL-AAKKAMYTLSAQDEVFSLAFSPNR 249
Query: 331 CWLAVC 336
WLA
Sbjct: 250 YWLAAA 255
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 272 FIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNV-ISWNR 330
FIGH++++ L SP + + AS DG I +W+ K A+ + A + ++ S NR
Sbjct: 192 FIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNL-AAKKAMYTLSAQDEVFSLAFSPNR 249
Query: 331 CWLAVC 336
WLA
Sbjct: 250 YWLAAA 255
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 272 FIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNV-ISWNR 330
FIGH++++ L SP + + AS DG I +W+ K A+ + A + ++ S NR
Sbjct: 192 FIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNL-AAKKAMYTLSAQDEVFSLAFSPNR 249
Query: 331 CWLAVC 336
WLA
Sbjct: 250 YWLAAA 255
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 272 FIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNV-ISWNR 330
FIGH++++ L SP + + AS DG I +W+ K A+ + A + ++ S NR
Sbjct: 186 FIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNL-AAKKAMYTLSAQDEVFSLAFSPNR 243
Query: 331 CWLAVC 336
WLA
Sbjct: 244 YWLAAA 249
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 63/146 (43%), Gaps = 19/146 (13%)
Query: 191 QVWDLRSHLNALAESETIVGQGAPQVSNQSPL---------VKFGGHKDEGYAIDWNPIT 241
+V +L S LN E T G P + P GH+ + ++P+
Sbjct: 64 KVMELESKLNEAKEEFT---SGGPLGQKRDPKEWIPRPPEKYALSGHRSPVTRVIFHPVF 120
Query: 242 TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHI 301
+ +V+ ++ I +W+ + GH+ SV+D+ + + + ASCS D I
Sbjct: 121 SV-MVSASEDATIKVWDYETGDF----ERTLKGHTDSVQDISFDHS-GKLLASCSADMTI 174
Query: 302 AIWDTRVGKSALTSFKAHNADVNVIS 327
+WD + G + + H+ +V+ +S
Sbjct: 175 KLWDFQ-GFECIRTMHGHDHNVSSVS 199
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 272 FIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRC 331
FIGH++++ L SP + + AS DG I +W+ K+ T S NR
Sbjct: 192 FIGHNSNINTLTASP-DGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVFSLAFSPNRY 250
Query: 332 WLAVC 336
WLA
Sbjct: 251 WLAAA 255
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAI 303
+ V+G + + +W+ + A + HS+ V + P + +F SC DG I +
Sbjct: 153 QAVSGGKDFSVKVWDLSQKAVLK----SYNAHSSEVNCVAACPGKDTIFLSCGEDGRILL 208
Query: 304 WDTRVGKSA 312
WDTR K A
Sbjct: 209 WDTRKPKPA 217
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 286 PTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADV 323
P + V A+ DG ++IWD R G ++ KAH A++
Sbjct: 246 PNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEM 283
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 24/119 (20%), Positives = 47/119 (39%), Gaps = 22/119 (18%)
Query: 188 GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVT 247
G +++WD R N ++ ++ G P + +D +P + T
Sbjct: 212 GQLKIWDFRQQGNEPSQILSLTGDRVPL-----------------HCVDRHPNQQHVVAT 254
Query: 248 GDCNSCIYLWEPASDATWNVDPNPFI-GHSASVEDLQWSPTEPDVFASCSVDGHIAIWD 305
G + + +W D P + H A + ++ + P+ P+ +CS DG + WD
Sbjct: 255 GGQDGMLSIW----DVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWD 309
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
Query: 245 LVTGDCNSCIYLW---EPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHI 301
+VTG + + +W + D W+++ GH V + S T P + AS S+D HI
Sbjct: 51 VVTGSLDDLVKVWKWRDERLDLQWSLE-----GHQLGVVSVDISHTLP-IAASSSLDAHI 104
Query: 302 AIWDTRVGK 310
+WD GK
Sbjct: 105 RLWDLENGK 113
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 30/145 (20%), Positives = 52/145 (35%), Gaps = 24/145 (16%)
Query: 175 TQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYA 234
+ N I A D G ++++ NA+ + + +F H
Sbjct: 76 SHNNKIIAGALDNGSLELYSTNEANNAI-----------------NSMARFSNHSSSVKT 118
Query: 235 IDWNPITTGRLVTGDCNSCIYLW------EPASDATWNVDPNPFIGHSASVEDLQWSPTE 288
+ +N L +G N I++W E S+ T + P + V L W+ +
Sbjct: 119 VKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYT-PLTPGQSMSSVDEVISLAWNQSL 177
Query: 289 PDVFASCSVDGHIAIWDTRVGKSAL 313
VFAS +IWD + K +
Sbjct: 178 AHVFASAGSSNFASIWDLKAKKEVI 202
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 235 IDW---NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDV 291
+DW N I G L G +Y A++A ++ F HS+SV+ ++++ + +V
Sbjct: 73 LDWSHNNKIIAGALDNGSLE--LYSTNEANNAINSMAR--FSNHSSSVKTVKFNAKQDNV 128
Query: 292 FASCSVDGHIAIWD 305
AS +G I IWD
Sbjct: 129 LASGGNNGEIFIWD 142
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 57/143 (39%), Gaps = 21/143 (14%)
Query: 179 HICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238
H+ AS + +WDL+ A+ E I +S SP G K + ++W+
Sbjct: 179 HVFASAGSSNFASIWDLK------AKKEVI------HLSYTSP---NSGIKQQLSVVEWH 223
Query: 239 PITTGRLVTG---DCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASC 295
P + R+ T D + I +W+ + T N GH + L W + + S
Sbjct: 224 PKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQ--GHQKGILSLDWCHQDEHLLLSS 281
Query: 296 SVDGHIAIWDTRVGKSALTSFKA 318
D + +W+ + L+ F A
Sbjct: 282 GRDNTVLLWNPESAEQ-LSQFPA 303
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/98 (21%), Positives = 47/98 (47%), Gaps = 14/98 (14%)
Query: 216 VSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGH 275
+ N+ ++ GH+ + Y++D+ P + +LV+G + + +W+ +
Sbjct: 152 IENRKIVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRTGQ---------CSL 201
Query: 276 SASVED----LQWSPTEPDVFASCSVDGHIAIWDTRVG 309
+ S+ED + SP + A+ S+D + +WD+ G
Sbjct: 202 TLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG 239
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 245 LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIW 304
L TG + I +W+ + + GH + L + P+ D S S D + IW
Sbjct: 138 LATGAEDRLIRIWDIENRKIVMI----LQGHEQDIYSLDYFPS-GDKLVSGSGDRTVRIW 192
Query: 305 DTRVGKSALT 314
D R G+ +LT
Sbjct: 193 DLRTGQCSLT 202
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 23/143 (16%)
Query: 204 ESETIVGQGAPQVSNQSPLVKFGGHKDEGYAI-DWNPITTGRLVTGDCNSCIYLWEP--- 259
SET G Q +Q + G +D I D N + R++TG S + L
Sbjct: 129 RSETSKGVYCLQYDDQKIV---SGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERV 185
Query: 260 ----ASDAT---WNVDP----NPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWD--T 306
+SD+T W+V+ N I H +V L+++ + +CS D IA+WD +
Sbjct: 186 IITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMAS 242
Query: 307 RVGKSALTSFKAHNADVNVISWN 329
+ H A VNV+ ++
Sbjct: 243 PTDITLRRVLVGHRAAVNVVDFD 265
>pdb|3FMO|A Chain A, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|A Chain A, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|C Chain C, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 450
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 279 VEDLQWSPTEPDVFASCSVDGHIAI 303
V D++W+PT P + A C DG IA+
Sbjct: 152 VIDMKWNPTVPSMVAVCLADGSIAV 176
>pdb|2OIT|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
Proto-Oncogene Nup214CAN
Length = 434
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 279 VEDLQWSPTEPDVFASCSVDGHIAI 303
V D++W+PT P + A C DG IA+
Sbjct: 152 VIDMKWNPTVPSMVAVCLADGSIAV 176
>pdb|3FHC|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Nup214
Length = 405
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 279 VEDLQWSPTEPDVFASCSVDGHIAI 303
V D++W+PT P + A C DG IA+
Sbjct: 152 VIDMKWNPTVPSMVAVCLADGSIAV 176
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 4/107 (3%)
Query: 222 LVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVED 281
+V F H D +I +P T +++G + + LW ++ W ++ F GH V
Sbjct: 90 VVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENN--WALE-QTFEGHEHFVMC 145
Query: 282 LQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISW 328
+ ++P +P FAS +D + +W T VN + +
Sbjct: 146 VAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDY 192
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 4/107 (3%)
Query: 222 LVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVED 281
+V F H D +I +P T +++G + + LW ++ W ++ F GH V
Sbjct: 90 VVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENN--WALE-QTFEGHEHFVMC 145
Query: 282 LQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISW 328
+ ++P +P FAS +D + +W T VN + +
Sbjct: 146 VAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDY 192
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 9/37 (24%), Positives = 23/37 (62%)
Query: 272 FIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV 308
++GH ++ +L++ P +P++ S S D + +W+ +
Sbjct: 147 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 183
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 9/37 (24%), Positives = 23/37 (62%)
Query: 272 FIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV 308
++GH ++ +L++ P +P++ S S D + +W+ +
Sbjct: 111 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 147
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 6/114 (5%)
Query: 216 VSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGH 275
VS+ L GH + + ++NP + +V+G + + +W+ + P H
Sbjct: 100 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLP----AH 154
Query: 276 SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWN 329
S V + ++ + + S S DG IWDT G+ T N V+ + ++
Sbjct: 155 SDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 207
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 222 LVKFGGHKDEGYAIDWNPITTGR--LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASV 279
L + GHK+E Y I N TG +V+G ++ +Y+W + GH+ V
Sbjct: 233 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI----VQKLQGHTDVV 288
Query: 280 EDLQWSPTEPDVFASCSV--DGHIAIWDT 306
PTE ++ AS ++ D I +W +
Sbjct: 289 ISTACHPTE-NIIASAALENDKTIKLWKS 316
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 9/37 (24%), Positives = 23/37 (62%)
Query: 272 FIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV 308
++GH ++ +L++ P +P++ S S D + +W+ +
Sbjct: 110 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 146
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 9/37 (24%), Positives = 23/37 (62%)
Query: 272 FIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV 308
++GH ++ +L++ P +P++ S S D + +W+ +
Sbjct: 110 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 146
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 9/37 (24%), Positives = 23/37 (62%)
Query: 272 FIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV 308
++GH ++ +L++ P +P++ S S D + +W+ +
Sbjct: 106 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 142
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 6/114 (5%)
Query: 216 VSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGH 275
VS+ L GH + + ++NP + +V+G + + +W+ + P H
Sbjct: 97 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLP----AH 151
Query: 276 SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWN 329
S V + ++ + + S S DG IWDT G+ T N V+ + ++
Sbjct: 152 SDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 204
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 6/114 (5%)
Query: 216 VSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGH 275
VS+ L GH + + ++NP + +V+G + + +W+ + P H
Sbjct: 111 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLP----AH 165
Query: 276 SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWN 329
S V + ++ + + S S DG IWDT G+ T N V+ + ++
Sbjct: 166 SDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 218
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 222 LVKFGGHKDEGYAIDWNPITTGR--LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASV 279
L + GHK+E Y I N TG +V+G ++ +Y+W + GH+ V
Sbjct: 244 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI----VQKLQGHTDVV 299
Query: 280 EDLQWSPTEPDVFASCSV--DGHIAIWDT 306
PTE ++ AS ++ D I +W +
Sbjct: 300 ISTACHPTE-NIIASAALENDKTIKLWKS 327
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 225 FGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNV---DPNPFIGHSASVED 281
FG H +++ +NP + TG + I L+ V D + HS SV
Sbjct: 186 FGEHTKFVHSVRYNPDGSLFASTG-GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFG 244
Query: 282 LQWSPTEPDVFASCSVDGHIAIWD 305
L WSP + AS S D I IW+
Sbjct: 245 LTWSPDGTKI-ASASADKTIKIWN 267
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 6/114 (5%)
Query: 216 VSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGH 275
VS+ L GH + + ++NP + +V+G + + +W+ + P H
Sbjct: 97 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLP----AH 151
Query: 276 SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWN 329
S V + ++ + + S S DG IWDT G+ T N V+ + ++
Sbjct: 152 SDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 204
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 49/115 (42%), Gaps = 6/115 (5%)
Query: 215 QVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIG 274
VS+ L GH + + ++NP + +V+G + + +W+ + P
Sbjct: 92 DVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLP----A 146
Query: 275 HSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWN 329
HS V + ++ + + S S DG IWDT G+ T N V+ + ++
Sbjct: 147 HSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 200
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 222 LVKFGGHKDEGYAIDWNPITTGR--LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASV 279
L + GHK+E Y I N TG +V+G ++ +Y+W + GH+ V
Sbjct: 226 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI----VQKLQGHTDVV 281
Query: 280 EDLQWSPTEPDVFASCSV--DGHIAIWDT 306
PTE ++ AS ++ D I +W +
Sbjct: 282 ISTACHPTE-NIIASAALENDKTIKLWKS 309
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 6/114 (5%)
Query: 216 VSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGH 275
VS+ L GH + + ++NP + +V+G + + +W+ + P H
Sbjct: 100 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLP----AH 154
Query: 276 SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWN 329
S V + ++ + + S S DG IWDT G+ T N V+ + ++
Sbjct: 155 SDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 207
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 222 LVKFGGHKDEGYAIDWNPITTGR--LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASV 279
L + GHK+E Y I N TG +V+G ++ +Y+W + GH+ V
Sbjct: 233 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI----VQKLQGHTDVV 288
Query: 280 EDLQWSPTEPDVFASCSV--DGHIAIWDT 306
PTE ++ AS ++ D I +W +
Sbjct: 289 ISTACHPTE-NIIASAALENDKTIKLWKS 316
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 6/114 (5%)
Query: 216 VSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGH 275
VS+ L GH + + ++NP + +V+G + + +W+ + P H
Sbjct: 97 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLP----AH 151
Query: 276 SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWN 329
S V + ++ + + S S DG IWDT G+ T N V+ + ++
Sbjct: 152 SDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 204
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 222 LVKFGGHKDEGYAIDWNPITTGR--LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASV 279
L + GHK+E Y I N TG +V+G ++ +Y+W + GH+ V
Sbjct: 230 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI----VQKLQGHTDVV 285
Query: 280 EDLQWSPTEPDVFASCSV--DGHIAIWDT 306
PTE ++ AS ++ D I +W +
Sbjct: 286 ISTACHPTE-NIIASAALENDKTIKLWKS 313
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 6/114 (5%)
Query: 216 VSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGH 275
VS+ L GH + + ++NP + +V+G + + +W+ + P H
Sbjct: 116 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLP----AH 170
Query: 276 SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWN 329
S V + ++ + + S S DG IWDT G+ T N V+ + ++
Sbjct: 171 SDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 223
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 222 LVKFGGHKDEGYAIDWNPITTGR--LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASV 279
L + GHK+E Y I N TG +V+G ++ +Y+W + GH+ V
Sbjct: 249 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI----VQKLQGHTDVV 304
Query: 280 EDLQWSPTEPDVFASCSV--DGHIAIWDT 306
PTE ++ AS ++ D I +W +
Sbjct: 305 ISTACHPTE-NIIASAALENDKTIKLWKS 332
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 6/114 (5%)
Query: 216 VSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGH 275
VS+ L GH + + ++NP + +V+G + + +W+ + P H
Sbjct: 94 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLP----AH 148
Query: 276 SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWN 329
S V + ++ + + S S DG IWDT G+ T N V+ + ++
Sbjct: 149 SDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 201
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 222 LVKFGGHKDEGYAIDWNPITTGR--LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASV 279
L + GHK+E Y I N TG +V+G ++ +Y+W + GH+ V
Sbjct: 227 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI----VQKLQGHTDVV 282
Query: 280 EDLQWSPTEPDVFASCSV--DGHIAIWDT 306
PTE ++ AS ++ D I +W +
Sbjct: 283 ISTACHPTE-NIIASAALENDKTIKLWKS 310
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 49/115 (42%), Gaps = 6/115 (5%)
Query: 215 QVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIG 274
VS+ L GH + + ++NP + +V+G + + +W+ + P
Sbjct: 89 DVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLP----A 143
Query: 275 HSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWN 329
HS V + ++ + + S S DG IWDT G+ T N V+ + ++
Sbjct: 144 HSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 197
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 222 LVKFGGHKDEGYAIDWNPITTGR--LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASV 279
L + GHK+E Y I N TG +V+G ++ +Y+W + GH+ V
Sbjct: 223 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI----VQKLQGHTDVV 278
Query: 280 EDLQWSPTEPDVFASCSV--DGHIAIWDT 306
PTE ++ AS ++ D I +W +
Sbjct: 279 ISTACHPTE-NIIASAALENDKTIKLWKS 306
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 6/114 (5%)
Query: 216 VSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGH 275
VS+ L GH + + ++NP + +V+G + + +W+ + P H
Sbjct: 94 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLP----AH 148
Query: 276 SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWN 329
S V + ++ + + S S DG IWDT G+ T N V+ + ++
Sbjct: 149 SDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 201
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 222 LVKFGGHKDEGYAIDWNPITTGR--LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASV 279
L + GHK+E Y I N TG +V+G ++ +Y+W + GH+ V
Sbjct: 227 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI----VQKLQGHTDVV 282
Query: 280 EDLQWSPTEPDVFASCSV--DGHIAIWDT 306
PTE ++ AS ++ D I +W +
Sbjct: 283 ISTACHPTE-NIIASAALENDKTIKLWKS 310
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 6/114 (5%)
Query: 216 VSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGH 275
VS+ L GH + + ++NP + +V+G + + +W+ + P H
Sbjct: 97 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGMCLKTLP----AH 151
Query: 276 SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWN 329
S V + ++ + + S S DG IWDT G+ T N V+ + ++
Sbjct: 152 SDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 204
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 222 LVKFGGHKDEGYAIDWNPITTGR--LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASV 279
L + GHK+E Y I N TG +V+G ++ +Y+W + GH+ V
Sbjct: 230 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEI----VQKLQGHTDVV 285
Query: 280 EDLQWSPTEPDVFASCSV--DGHIAIWDT 306
PTE ++ AS ++ D I +W +
Sbjct: 286 ISTACHPTE-NIIASAALENDKTIKLWKS 313
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 6/114 (5%)
Query: 216 VSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGH 275
VS+ L GH + + ++NP + +V+G + + +W+ + P H
Sbjct: 99 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLP----AH 153
Query: 276 SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWN 329
S V + ++ + + S S DG IWDT G+ T N V+ + ++
Sbjct: 154 SDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 206
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 222 LVKFGGHKDEGYAIDWNPITTGR--LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASV 279
L + GHK+E Y I N TG +V+G ++ +Y+W + GH+ V
Sbjct: 232 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI----VQKLQGHTDVV 287
Query: 280 EDLQWSPTEPDVFASCSV--DGHIAIWDT 306
PTE ++ AS ++ D I +W +
Sbjct: 288 ISTACHPTE-NIIASAALENDKTIKLWKS 315
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 6/114 (5%)
Query: 216 VSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGH 275
VS+ L GH + + ++NP + +V+G + + +W+ + P H
Sbjct: 118 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLP----AH 172
Query: 276 SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWN 329
S V + ++ + + S S DG IWDT G+ T N V+ + ++
Sbjct: 173 SDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 225
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 222 LVKFGGHKDEGYAIDWNPITTGR--LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASV 279
L + GHK+E Y I N TG +V+G ++ +Y+W + GH+ V
Sbjct: 251 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI----VQKLQGHTDVV 306
Query: 280 EDLQWSPTEPDVFASCSV--DGHIAIWDT 306
PTE ++ AS ++ D I +W +
Sbjct: 307 ISTACHPTE-NIIASAALENDKTIKLWKS 334
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 6/114 (5%)
Query: 216 VSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGH 275
VS+ L GH + + ++NP + +V+G + + +W+ + P H
Sbjct: 95 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLP----AH 149
Query: 276 SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWN 329
S V + ++ + + S S DG IWDT G+ T N V+ + ++
Sbjct: 150 SDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 202
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 222 LVKFGGHKDEGYAIDWNPITTGR--LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASV 279
L + GHK+E Y I N TG +V+G ++ +Y+W + GH+ V
Sbjct: 228 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI----VQKLQGHTDVV 283
Query: 280 EDLQWSPTEPDVFASCSV--DGHIAIWDT 306
PTE ++ AS ++ D I +W +
Sbjct: 284 ISTACHPTE-NIIASAALENDKTIKLWKS 311
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 6/114 (5%)
Query: 216 VSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGH 275
VS+ L GH + + ++NP + +V+G + + +W+ + P H
Sbjct: 100 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLP----AH 154
Query: 276 SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWN 329
S V + ++ + + S S DG IWDT G+ T N V+ + ++
Sbjct: 155 SDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 207
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 222 LVKFGGHKDEGYAIDWNPITTGR--LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASV 279
L + GHK+E Y I N TG +V+G ++ +Y+W + GH+ V
Sbjct: 233 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI----VQKLQGHTDVV 288
Query: 280 EDLQWSPTEPDVFASCSV--DGHIAIWDT 306
PTE ++ AS ++ D I +W +
Sbjct: 289 ISTACHPTE-NIIASAALENDKTIKLWKS 316
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 6/114 (5%)
Query: 216 VSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGH 275
VS+ L GH + + ++NP + +V+G + + +W+ + P H
Sbjct: 97 VSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGMCLKTLP----AH 151
Query: 276 SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWN 329
S V + ++ + + S S DG IWDT G+ T N V+ + ++
Sbjct: 152 SDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 204
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 222 LVKFGGHKDEGYAIDWNPITTGR--LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASV 279
L + GHK+E Y I N TG +V+G ++ +Y+W + GH+ V
Sbjct: 230 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEI----VQKLQGHTDVV 285
Query: 280 EDLQWSPTEPDVFASCSV--DGHIAIWDT 306
PTE ++ AS ++ D I +W +
Sbjct: 286 ISTACHPTE-NIIASAALENDKTIKLWKS 313
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 4/107 (3%)
Query: 222 LVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVED 281
+V F H D +I +P T +++G + + LW ++ W ++ F GH V
Sbjct: 90 VVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENN--WALE-QTFEGHEHFVMC 145
Query: 282 LQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISW 328
+ ++P +P FAS +D + +W T VN + +
Sbjct: 146 VAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDY 192
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 4/107 (3%)
Query: 222 LVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVED 281
+V F H D +I +P T +++G + + LW ++ W ++ F GH V
Sbjct: 90 VVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENN--WALE-QTFEGHEHFVMC 145
Query: 282 LQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISW 328
+ ++P +P FAS +D + +W T VN + +
Sbjct: 146 VAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDY 192
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 268 DPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHN 320
+P IGH A+V D+ +V S S+DG I +W+ G + T + N
Sbjct: 170 NPRTLIGHRATVTDIAIIDRGRNVL-SASLDGTIRLWECGTGTTIHTFNRKEN 221
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 268 DPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHN 320
+P IGH A+V D+ +V S S+DG I +W+ G + T + N
Sbjct: 173 NPRTLIGHRATVTDIAIIDRGRNVL-SASLDGTIRLWECGTGTTIHTFNRKEN 224
>pdb|1TDQ|B Chain B, Structural Basis For The Interactions Between Tenascins
And The C-Type Lectin Domains From Lecticans: Evidence
For A Cross-Linking Role For Tenascins
Length = 130
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 251 NSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTR 307
N+ Y W +D T D GHS E +W P +PD F + D + IW R
Sbjct: 57 NAQDYQWIGLNDRTIEGDFRWSDGHSLQFE--KWRPNQPDNFFATGEDCVVMIWHER 111
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 58/153 (37%), Gaps = 45/153 (29%)
Query: 181 CASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI 240
AS + VQ+WD RS + + +N + VK A+ W P
Sbjct: 232 LASGGNDNVVQIWDARSSIPKFTK------------TNHNAAVK---------AVAWCPW 270
Query: 241 TTGRLVT--GDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSV- 297
+ L T G + I+ W A+ A N + + V L WSP ++ ++
Sbjct: 271 QSNLLATGGGTMDKQIHFWNAATGARVNT-----VDAGSQVTSLIWSPHSKEIMSTHGFP 325
Query: 298 DGHIAIW----------------DTRVGKSALT 314
D +++IW DTRV SAL+
Sbjct: 326 DNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALS 358
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 279 VEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF 316
V L+W PT P A S G I +WD V TSF
Sbjct: 76 VTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNK--TSF 111
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 279 VEDLQWSPTEPDVFASCSVDGHIAIWDTRV 308
V L+W PT P A S G I +WD V
Sbjct: 75 VTSLEWHPTHPTTVAVGSKGGDIILWDYDV 104
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,901,404
Number of Sequences: 62578
Number of extensions: 448173
Number of successful extensions: 1062
Number of sequences better than 100.0: 90
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 879
Number of HSP's gapped (non-prelim): 177
length of query: 359
length of database: 14,973,337
effective HSP length: 100
effective length of query: 259
effective length of database: 8,715,537
effective search space: 2257324083
effective search space used: 2257324083
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)