Query 018235
Match_columns 359
No_of_seqs 478 out of 2927
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 07:16:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018235.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018235hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0302 Ribosome Assembly prot 100.0 3.7E-65 8E-70 445.4 23.4 298 31-355 33-333 (440)
2 KOG0264 Nucleosome remodeling 100.0 2.7E-49 5.8E-54 353.7 23.3 285 29-357 15-306 (422)
3 KOG0263 Transcription initiati 100.0 9.9E-29 2.1E-33 234.9 20.1 169 157-358 443-611 (707)
4 KOG0263 Transcription initiati 100.0 2.1E-28 4.5E-33 232.7 19.0 202 64-355 449-650 (707)
5 KOG0272 U4/U6 small nuclear ri 100.0 1.9E-28 4.1E-33 218.0 17.0 168 156-355 208-376 (459)
6 KOG0271 Notchless-like WD40 re 100.0 3.1E-28 6.7E-33 214.3 17.6 167 159-357 109-279 (480)
7 KOG0277 Peroxisomal targeting 100.0 4.9E-27 1.1E-31 196.8 20.6 216 67-357 9-224 (311)
8 KOG0272 U4/U6 small nuclear ri 99.9 1.2E-27 2.7E-32 212.8 11.2 166 159-357 255-421 (459)
9 KOG0286 G-protein beta subunit 99.9 1.7E-25 3.7E-30 190.9 22.4 229 45-357 75-306 (343)
10 KOG0273 Beta-transducin family 99.9 1.5E-25 3.2E-30 202.1 21.4 166 154-354 350-523 (524)
11 KOG0273 Beta-transducin family 99.9 2.1E-25 4.5E-30 201.1 21.7 194 154-358 265-486 (524)
12 KOG0284 Polyadenylation factor 99.9 1.3E-26 2.7E-31 205.6 12.5 202 63-355 93-295 (464)
13 KOG0271 Notchless-like WD40 re 99.9 1.8E-25 3.9E-30 196.9 18.9 173 154-358 236-443 (480)
14 KOG0264 Nucleosome remodeling 99.9 4E-25 8.6E-30 198.7 19.9 171 159-354 221-404 (422)
15 KOG0279 G protein beta subunit 99.9 1.3E-24 2.8E-29 184.5 19.9 173 154-357 52-225 (315)
16 KOG0279 G protein beta subunit 99.9 6.4E-24 1.4E-28 180.3 22.4 169 154-358 94-266 (315)
17 KOG0277 Peroxisomal targeting 99.9 6.2E-25 1.3E-29 184.2 16.0 170 159-356 98-267 (311)
18 KOG0285 Pleiotropic regulator 99.9 4.9E-25 1.1E-29 192.7 16.0 168 157-357 143-310 (460)
19 KOG0286 G-protein beta subunit 99.9 7E-24 1.5E-28 181.1 22.6 204 70-357 59-262 (343)
20 KOG0284 Polyadenylation factor 99.9 1.1E-25 2.4E-30 199.6 12.1 209 55-354 128-337 (464)
21 KOG0266 WD40 repeat-containing 99.9 4E-24 8.7E-29 205.9 23.9 169 159-358 197-368 (456)
22 PTZ00421 coronin; Provisional 99.9 1.3E-23 2.7E-28 202.5 23.8 176 161-356 71-247 (493)
23 KOG0640 mRNA cleavage stimulat 99.9 4.7E-24 1E-28 183.5 16.3 245 46-357 83-338 (430)
24 KOG0302 Ribosome Assembly prot 99.9 2E-23 4.3E-28 183.8 20.2 267 34-356 75-380 (440)
25 KOG0315 G-protein beta subunit 99.9 3.5E-23 7.5E-28 173.3 20.4 171 158-357 76-291 (311)
26 KOG0291 WD40-repeat-containing 99.9 3.3E-23 7.1E-28 196.2 22.5 171 157-356 342-552 (893)
27 KOG0276 Vesicle coat complex C 99.9 2.2E-23 4.7E-28 193.8 19.0 192 90-357 68-260 (794)
28 KOG0772 Uncharacterized conser 99.9 1.4E-23 2.9E-28 191.3 17.1 193 157-355 159-395 (641)
29 PTZ00421 coronin; Provisional 99.9 4.8E-22 1E-26 191.5 27.2 212 66-357 75-293 (493)
30 KOG0285 Pleiotropic regulator 99.9 4.2E-23 9E-28 180.7 17.9 190 88-357 162-351 (460)
31 PTZ00420 coronin; Provisional 99.9 8.2E-22 1.8E-26 191.1 28.5 178 158-355 67-249 (568)
32 KOG0313 Microtubule binding pr 99.9 2.7E-22 5.9E-27 176.8 20.3 166 159-355 254-419 (423)
33 KOG0266 WD40 repeat-containing 99.9 8E-22 1.7E-26 190.0 25.4 203 68-358 205-413 (456)
34 KOG0319 WD40-repeat-containing 99.9 8.5E-23 1.9E-27 193.1 18.0 179 156-357 402-580 (775)
35 KOG0270 WD40 repeat-containing 99.9 1.5E-22 3.2E-27 181.6 18.1 239 60-355 167-405 (463)
36 KOG0265 U5 snRNP-specific prot 99.9 1E-22 2.2E-27 174.6 16.0 167 160-358 42-208 (338)
37 KOG0281 Beta-TrCP (transducin 99.9 7.4E-23 1.6E-27 178.6 13.6 225 51-357 164-391 (499)
38 KOG0306 WD40-repeat-containing 99.9 4E-22 8.6E-27 188.9 19.1 239 32-356 394-666 (888)
39 KOG0319 WD40-repeat-containing 99.9 2.1E-22 4.5E-27 190.5 16.9 164 160-356 458-621 (775)
40 KOG0295 WD40 repeat-containing 99.9 1.4E-21 2.9E-26 171.6 20.7 169 154-354 224-406 (406)
41 KOG0645 WD40 repeat protein [G 99.9 1.2E-21 2.6E-26 165.9 19.1 165 162-353 58-224 (312)
42 KOG0296 Angio-associated migra 99.9 2.4E-21 5.1E-26 170.1 20.3 168 158-358 57-224 (399)
43 KOG0276 Vesicle coat complex C 99.9 1.6E-21 3.5E-26 181.4 20.4 173 154-357 44-218 (794)
44 KOG0269 WD40 repeat-containing 99.9 8.6E-23 1.9E-27 193.9 11.3 166 166-357 88-253 (839)
45 KOG0973 Histone transcription 99.9 9.8E-22 2.1E-26 193.3 18.8 230 69-353 16-252 (942)
46 KOG0269 WD40 repeat-containing 99.9 3.5E-22 7.6E-27 189.8 15.1 172 159-357 127-299 (839)
47 cd00200 WD40 WD40 domain, foun 99.9 2.8E-20 6.2E-25 165.8 26.3 202 66-357 9-210 (289)
48 KOG0282 mRNA splicing factor [ 99.9 6.2E-23 1.3E-27 185.8 9.0 170 156-356 205-374 (503)
49 KOG0283 WD40 repeat-containing 99.9 7.8E-22 1.7E-26 189.5 17.0 181 163-357 265-484 (712)
50 KOG0295 WD40 repeat-containing 99.9 3.1E-21 6.8E-26 169.3 17.9 167 159-357 187-367 (406)
51 KOG0265 U5 snRNP-specific prot 99.9 7.2E-21 1.6E-25 163.3 19.6 161 162-355 87-247 (338)
52 KOG0310 Conserved WD40 repeat- 99.9 2.3E-21 5E-26 175.9 16.4 171 156-357 101-271 (487)
53 cd00200 WD40 WD40 domain, foun 99.9 7.8E-20 1.7E-24 163.0 25.5 161 159-352 129-289 (289)
54 KOG0292 Vesicle coat complex C 99.9 2.1E-21 4.6E-26 186.7 16.1 170 154-355 40-237 (1202)
55 PTZ00420 coronin; Provisional 99.9 1E-19 2.2E-24 176.6 27.7 212 66-357 74-296 (568)
56 KOG0318 WD40 repeat stress pro 99.9 4.3E-20 9.3E-25 169.0 23.4 192 156-358 50-269 (603)
57 KOG0645 WD40 repeat protein [G 99.9 2.9E-20 6.3E-25 157.6 20.5 172 156-354 5-180 (312)
58 PLN00181 protein SPA1-RELATED; 99.9 7.1E-20 1.5E-24 188.5 27.5 162 163-355 530-691 (793)
59 PLN00181 protein SPA1-RELATED; 99.9 1.1E-19 2.4E-24 187.1 28.1 168 156-355 566-739 (793)
60 KOG0641 WD40 repeat protein [G 99.9 2.2E-19 4.8E-24 148.7 24.2 190 155-354 78-303 (350)
61 KOG0316 Conserved WD40 repeat- 99.9 1.7E-20 3.6E-25 156.2 16.1 168 159-358 11-217 (307)
62 KOG0313 Microtubule binding pr 99.9 3.9E-20 8.4E-25 163.3 19.0 183 162-356 190-378 (423)
63 KOG0275 Conserved WD40 repeat- 99.9 1.5E-21 3.3E-26 169.0 9.2 174 159-357 207-381 (508)
64 KOG0305 Anaphase promoting com 99.8 5.4E-20 1.2E-24 172.4 18.1 161 164-356 259-421 (484)
65 KOG0292 Vesicle coat complex C 99.8 8.7E-20 1.9E-24 175.7 19.4 206 65-355 50-281 (1202)
66 KOG0290 Conserved WD40 repeat- 99.8 6.8E-20 1.5E-24 156.7 16.6 223 63-355 93-319 (364)
67 KOG0281 Beta-TrCP (transducin 99.8 7.2E-21 1.6E-25 166.2 10.7 163 156-356 268-430 (499)
68 KOG0291 WD40-repeat-containing 99.8 2.4E-19 5.2E-24 170.3 21.6 191 154-357 381-615 (893)
69 KOG0318 WD40 repeat stress pro 99.8 5.7E-19 1.2E-23 161.7 23.1 169 154-357 178-353 (603)
70 KOG1332 Vesicle coat complex C 99.8 7.4E-20 1.6E-24 153.0 15.9 178 156-354 47-241 (299)
71 PF12265 CAF1C_H4-bd: Histone- 99.8 2.2E-22 4.9E-27 142.5 0.3 64 51-115 9-73 (74)
72 KOG4283 Transcription-coupled 99.8 2.4E-19 5.3E-24 153.7 18.0 165 163-357 99-279 (397)
73 KOG0315 G-protein beta subunit 99.8 7.9E-19 1.7E-23 147.3 20.6 169 154-355 29-198 (311)
74 KOG0305 Anaphase promoting com 99.8 3.4E-19 7.4E-24 167.0 20.0 170 156-357 209-379 (484)
75 KOG0310 Conserved WD40 repeat- 99.8 7E-20 1.5E-24 166.3 14.6 165 161-357 64-228 (487)
76 KOG0646 WD40 repeat protein [G 99.8 4.4E-19 9.6E-24 160.4 18.8 203 85-356 89-309 (476)
77 KOG0316 Conserved WD40 repeat- 99.8 7.6E-19 1.7E-23 146.3 18.5 157 154-338 48-211 (307)
78 KOG0274 Cdc4 and related F-box 99.8 9.2E-19 2E-23 169.4 21.7 164 155-356 238-402 (537)
79 KOG0289 mRNA splicing factor [ 99.8 5.3E-19 1.2E-23 158.5 17.8 170 156-356 252-421 (506)
80 KOG0275 Conserved WD40 repeat- 99.8 8E-20 1.7E-24 158.4 12.2 220 47-333 150-405 (508)
81 KOG0293 WD40 repeat-containing 99.8 4.7E-19 1E-23 158.0 17.0 230 56-355 201-514 (519)
82 KOG0267 Microtubule severing p 99.8 1.2E-20 2.7E-25 178.2 7.1 169 154-355 59-227 (825)
83 KOG0640 mRNA cleavage stimulat 99.8 3.3E-19 7.2E-24 153.8 14.9 186 159-357 106-294 (430)
84 KOG1407 WD40 repeat protein [F 99.8 1.8E-18 4E-23 146.0 18.4 207 67-357 21-264 (313)
85 KOG0303 Actin-binding protein 99.8 7.5E-19 1.6E-23 155.9 16.8 227 55-355 23-250 (472)
86 KOG1007 WD repeat protein TSSC 99.8 8.7E-19 1.9E-23 149.9 16.3 220 90-354 27-289 (370)
87 KOG0296 Angio-associated migra 99.8 6.1E-18 1.3E-22 148.8 21.4 169 157-358 98-267 (399)
88 KOG0278 Serine/threonine kinas 99.8 7.1E-19 1.5E-23 147.6 14.7 208 58-357 92-300 (334)
89 KOG0282 mRNA splicing factor [ 99.8 5.3E-19 1.2E-23 160.4 14.9 171 154-352 247-503 (503)
90 KOG1332 Vesicle coat complex C 99.8 1.7E-18 3.6E-23 145.0 16.6 173 159-355 96-287 (299)
91 KOG0643 Translation initiation 99.8 1.3E-18 2.7E-23 147.4 15.9 170 161-358 6-224 (327)
92 KOG0300 WD40 repeat-containing 99.8 2.3E-18 5E-23 149.1 17.6 166 159-357 266-431 (481)
93 KOG0300 WD40 repeat-containing 99.8 8.3E-19 1.8E-23 151.8 14.0 191 154-356 179-388 (481)
94 KOG0308 Conserved WD40 repeat- 99.8 1.4E-18 2.9E-23 162.8 14.6 173 158-357 66-246 (735)
95 KOG0274 Cdc4 and related F-box 99.8 1.1E-17 2.3E-22 162.0 21.4 166 154-358 320-486 (537)
96 KOG0973 Histone transcription 99.8 1.8E-18 4E-23 170.4 16.3 178 160-355 7-202 (942)
97 KOG0294 WD40 repeat-containing 99.8 1.5E-17 3.2E-22 144.0 19.9 172 156-356 74-283 (362)
98 KOG0307 Vesicle coat complex C 99.8 4.7E-19 1E-23 175.3 10.6 174 158-358 109-288 (1049)
99 KOG0772 Uncharacterized conser 99.8 9.6E-19 2.1E-23 159.9 11.7 174 159-355 262-446 (641)
100 KOG4328 WD40 protein [Function 99.8 7.1E-18 1.5E-22 152.3 16.9 169 159-354 228-399 (498)
101 KOG0294 WD40 repeat-containing 99.8 3.1E-17 6.8E-22 141.9 20.2 165 154-355 30-198 (362)
102 KOG1407 WD40 repeat protein [F 99.8 6.1E-17 1.3E-21 136.9 21.0 162 163-354 145-311 (313)
103 KOG0268 Sof1-like rRNA process 99.8 4E-18 8.7E-23 149.9 13.8 210 95-358 80-306 (433)
104 KOG0308 Conserved WD40 repeat- 99.8 1E-17 2.2E-22 157.0 16.2 177 157-355 109-286 (735)
105 KOG1446 Histone H3 (Lys4) meth 99.8 2.1E-16 4.6E-21 137.0 22.9 171 154-358 45-221 (311)
106 KOG0647 mRNA export protein (c 99.8 3.5E-17 7.5E-22 140.9 17.0 158 159-341 66-314 (347)
107 KOG0289 mRNA splicing factor [ 99.8 1.2E-16 2.7E-21 143.5 20.5 153 159-340 297-452 (506)
108 KOG0267 Microtubule severing p 99.8 1.5E-18 3.3E-23 164.2 8.1 166 160-358 23-188 (825)
109 KOG0290 Conserved WD40 repeat- 99.8 1.7E-16 3.7E-21 136.1 19.7 161 155-339 186-355 (364)
110 KOG0268 Sof1-like rRNA process 99.7 5E-18 1.1E-22 149.3 10.1 161 165-356 187-347 (433)
111 KOG0283 WD40 repeat-containing 99.7 1.8E-16 3.9E-21 152.9 21.2 162 159-355 363-533 (712)
112 KOG0643 Translation initiation 99.7 7.2E-17 1.6E-21 136.9 15.9 185 158-353 45-316 (327)
113 KOG0303 Actin-binding protein 99.7 1.5E-17 3.3E-22 147.7 12.3 130 223-358 75-207 (472)
114 KOG1446 Histone H3 (Lys4) meth 99.7 1.9E-15 4.1E-20 131.1 23.2 171 154-358 89-266 (311)
115 KOG2445 Nuclear pore complex c 99.7 1E-15 2.2E-20 132.3 20.6 184 154-355 48-319 (361)
116 KOG4283 Transcription-coupled 99.7 1.5E-16 3.3E-21 136.6 15.1 177 162-356 40-221 (397)
117 KOG0301 Phospholipase A2-activ 99.7 1.7E-16 3.7E-21 149.8 16.3 155 159-354 95-249 (745)
118 KOG0299 U3 snoRNP-associated p 99.7 3.3E-16 7.1E-21 141.7 17.3 162 160-356 239-412 (479)
119 KOG1188 WD40 repeat protein [G 99.7 5.8E-16 1.3E-20 135.5 17.9 178 155-357 60-245 (376)
120 KOG1274 WD40 repeat protein [G 99.7 8.3E-16 1.8E-20 149.3 20.8 160 163-355 94-263 (933)
121 KOG0270 WD40 repeat-containing 99.7 6E-16 1.3E-20 139.5 18.4 169 160-357 281-452 (463)
122 KOG0639 Transducin-like enhanc 99.7 6.4E-17 1.4E-21 147.6 12.2 157 166-357 510-666 (705)
123 KOG0641 WD40 repeat protein [G 99.7 1.7E-15 3.7E-20 125.8 19.3 186 154-357 20-264 (350)
124 KOG0288 WD40 repeat protein Ti 99.7 4E-16 8.6E-21 139.4 16.2 185 155-352 251-459 (459)
125 KOG0293 WD40 repeat-containing 99.7 2.7E-16 5.8E-21 140.5 15.1 165 159-354 218-384 (519)
126 KOG1034 Transcriptional repres 99.7 2.6E-16 5.7E-21 137.0 14.3 173 154-353 124-382 (385)
127 KOG1445 Tumor-specific antigen 99.7 1.2E-16 2.7E-21 149.3 13.1 173 164-355 626-799 (1012)
128 KOG1273 WD40 repeat protein [G 99.7 5.8E-16 1.3E-20 134.2 16.0 160 163-354 22-226 (405)
129 KOG0647 mRNA export protein (c 99.7 7.3E-16 1.6E-20 132.9 16.4 162 163-357 25-187 (347)
130 KOG0306 WD40-repeat-containing 99.7 4.7E-16 1E-20 148.1 15.2 154 165-353 65-218 (888)
131 KOG1036 Mitotic spindle checkp 99.7 3.9E-15 8.4E-20 128.8 19.5 209 46-341 34-295 (323)
132 KOG0288 WD40 repeat protein Ti 99.7 1E-16 2.2E-21 143.2 9.9 166 157-359 211-376 (459)
133 KOG0278 Serine/threonine kinas 99.7 7.8E-17 1.7E-21 135.5 8.2 167 154-355 48-214 (334)
134 KOG0307 Vesicle coat complex C 99.7 3.5E-16 7.6E-21 155.2 13.8 239 36-356 71-329 (1049)
135 KOG0639 Transducin-like enhanc 99.7 3.4E-16 7.4E-21 142.9 12.5 160 154-341 454-613 (705)
136 KOG1007 WD repeat protein TSSC 99.7 4.1E-15 8.9E-20 127.6 17.4 162 164-352 169-359 (370)
137 KOG4378 Nuclear protein COP1 [ 99.7 2.6E-15 5.7E-20 137.0 16.6 172 154-356 110-282 (673)
138 KOG0299 U3 snoRNP-associated p 99.7 1.9E-15 4.2E-20 136.8 14.9 160 162-356 199-358 (479)
139 KOG1009 Chromatin assembly com 99.7 1.3E-15 2.8E-20 136.0 13.4 169 158-339 58-249 (434)
140 KOG2919 Guanine nucleotide-bin 99.7 7.7E-15 1.7E-19 127.7 17.8 215 47-340 142-360 (406)
141 KOG0646 WD40 repeat protein [G 99.7 3.2E-15 6.9E-20 135.6 15.5 164 160-352 76-245 (476)
142 KOG0301 Phospholipase A2-activ 99.7 4.1E-15 8.8E-20 140.7 16.4 158 157-355 132-289 (745)
143 KOG1009 Chromatin assembly com 99.6 1.3E-15 2.8E-20 136.0 12.1 158 165-338 13-183 (434)
144 KOG2096 WD40 repeat protein [G 99.6 8.3E-15 1.8E-19 127.3 16.2 189 154-354 75-308 (420)
145 KOG1523 Actin-related protein 99.6 1.4E-14 3.1E-19 125.9 17.2 214 64-356 8-238 (361)
146 KOG0321 WD40 repeat-containing 99.6 9.4E-15 2E-19 137.0 17.2 173 159-358 94-305 (720)
147 KOG1539 WD repeat protein [Gen 99.6 2.8E-14 6.1E-19 137.5 19.9 157 162-352 490-646 (910)
148 KOG0642 Cell-cycle nuclear pro 99.6 2.6E-14 5.6E-19 132.5 17.7 179 157-354 336-561 (577)
149 KOG1587 Cytoplasmic dynein int 99.6 5.7E-14 1.2E-18 135.5 20.4 188 159-354 285-516 (555)
150 KOG2106 Uncharacterized conser 99.6 1.1E-13 2.3E-18 126.9 20.9 196 75-354 325-521 (626)
151 KOG1274 WD40 repeat protein [G 99.6 4.1E-14 8.8E-19 137.8 18.9 159 159-340 132-290 (933)
152 KOG1445 Tumor-specific antigen 99.6 9.2E-15 2E-19 137.0 12.0 152 184-357 599-753 (1012)
153 KOG2394 WD40 protein DMR-N9 [G 99.6 6.9E-14 1.5E-18 129.0 17.0 159 165-330 219-384 (636)
154 KOG0649 WD40 repeat protein [G 99.6 2.8E-13 6.1E-18 113.8 19.1 208 88-357 21-238 (325)
155 KOG1063 RNA polymerase II elon 99.6 3.1E-14 6.8E-19 134.7 15.0 168 159-354 519-699 (764)
156 KOG1310 WD40 repeat protein [G 99.6 6.6E-15 1.4E-19 136.0 10.2 173 157-354 42-231 (758)
157 KOG4328 WD40 protein [Function 99.6 2.9E-14 6.2E-19 129.2 13.9 172 161-355 182-354 (498)
158 KOG2096 WD40 repeat protein [G 99.6 1.9E-13 4E-18 119.0 18.4 165 165-352 228-400 (420)
159 KOG0642 Cell-cycle nuclear pro 99.6 2.7E-14 5.8E-19 132.4 14.0 180 157-358 286-523 (577)
160 KOG2106 Uncharacterized conser 99.6 6.4E-13 1.4E-17 121.9 22.1 183 154-356 276-479 (626)
161 KOG2048 WD40 repeat protein [G 99.6 7.9E-13 1.7E-17 125.1 23.0 172 154-358 57-237 (691)
162 KOG1524 WD40 repeat-containing 99.6 3E-14 6.4E-19 131.4 12.9 164 156-357 95-258 (737)
163 KOG4378 Nuclear protein COP1 [ 99.6 1.2E-13 2.5E-18 126.4 16.5 140 166-332 165-305 (673)
164 KOG0321 WD40 repeat-containing 99.6 2.2E-14 4.7E-19 134.6 12.0 161 176-357 62-251 (720)
165 TIGR03866 PQQ_ABC_repeats PQQ- 99.6 1.5E-12 3.2E-17 118.3 24.0 162 164-358 113-283 (300)
166 KOG1188 WD40 repeat protein [G 99.6 5.9E-14 1.3E-18 123.0 13.9 150 179-355 41-197 (376)
167 KOG1034 Transcriptional repres 99.6 1.4E-13 3.1E-18 120.1 15.7 169 160-356 33-213 (385)
168 KOG2445 Nuclear pore complex c 99.6 2.9E-13 6.3E-18 117.2 17.0 173 163-355 11-208 (361)
169 KOG1408 WD40 repeat protein [F 99.5 1.5E-13 3.3E-18 130.5 16.3 189 159-355 495-714 (1080)
170 KOG2055 WD40 repeat protein [G 99.5 2E-13 4.3E-18 123.9 15.9 166 160-354 339-512 (514)
171 KOG1273 WD40 repeat protein [G 99.5 3.2E-13 6.9E-18 117.4 16.4 223 69-358 26-284 (405)
172 PF08662 eIF2A: Eukaryotic tra 99.5 6.8E-13 1.5E-17 113.2 18.5 154 170-355 10-180 (194)
173 KOG1523 Actin-related protein 99.5 2.4E-13 5.3E-18 118.3 14.7 164 164-353 9-175 (361)
174 KOG2919 Guanine nucleotide-bin 99.5 2E-12 4.3E-17 112.8 20.0 165 163-355 102-282 (406)
175 TIGR03866 PQQ_ABC_repeats PQQ- 99.5 6.8E-12 1.5E-16 113.9 24.1 160 165-357 30-190 (300)
176 KOG1587 Cytoplasmic dynein int 99.5 7E-13 1.5E-17 128.0 18.2 174 163-355 240-473 (555)
177 KOG1408 WD40 repeat protein [F 99.5 3.8E-13 8.2E-18 127.9 14.8 167 161-358 455-675 (1080)
178 KOG4227 WD40 repeat protein [G 99.5 2.6E-13 5.7E-18 120.9 12.9 180 154-356 45-227 (609)
179 KOG2048 WD40 repeat protein [G 99.5 2.2E-12 4.7E-17 122.2 19.2 166 159-357 18-187 (691)
180 COG2319 FOG: WD40 repeat [Gene 99.5 1.4E-11 3E-16 115.4 24.7 170 156-357 146-317 (466)
181 KOG1036 Mitotic spindle checkp 99.5 2E-12 4.3E-17 112.1 16.9 155 164-357 12-166 (323)
182 KOG0322 G-protein beta subunit 99.5 6.3E-13 1.4E-17 112.9 13.1 172 163-353 148-322 (323)
183 KOG0650 WD40 repeat nucleolar 99.5 6.7E-13 1.5E-17 124.0 13.9 158 162-351 563-732 (733)
184 KOG2111 Uncharacterized conser 99.5 3.7E-11 8E-16 104.8 23.0 184 42-309 70-258 (346)
185 KOG1539 WD repeat protein [Gen 99.4 6.4E-12 1.4E-16 121.5 18.1 170 154-353 191-364 (910)
186 KOG0771 Prolactin regulatory e 99.4 2.7E-12 5.9E-17 115.6 13.9 143 169-337 148-341 (398)
187 KOG2110 Uncharacterized conser 99.4 5.4E-11 1.2E-15 105.6 21.7 161 159-355 81-249 (391)
188 KOG2055 WD40 repeat protein [G 99.4 4.2E-11 9.1E-16 109.0 20.1 166 159-355 251-418 (514)
189 KOG1272 WD40-repeat-containing 99.4 8.2E-13 1.8E-17 120.1 9.0 160 156-352 201-360 (545)
190 KOG1517 Guanine nucleotide bin 99.4 2.4E-11 5.3E-16 120.2 19.5 167 164-358 1207-1385(1387)
191 KOG1310 WD40 repeat protein [G 99.4 1.2E-11 2.5E-16 114.8 15.6 189 154-357 82-306 (758)
192 KOG1063 RNA polymerase II elon 99.4 1.4E-11 3.1E-16 116.9 16.0 174 159-354 566-763 (764)
193 KOG1538 Uncharacterized conser 99.4 1.9E-12 4E-17 122.4 9.7 147 167-352 14-160 (1081)
194 KOG0650 WD40 repeat nucleolar 99.4 9.4E-13 2E-17 123.0 7.5 122 159-304 601-732 (733)
195 PF08662 eIF2A: Eukaryotic tra 99.4 6.9E-11 1.5E-15 100.8 18.5 114 163-308 57-180 (194)
196 KOG2394 WD40 protein DMR-N9 [G 99.4 1.3E-11 2.9E-16 114.2 14.5 119 164-309 289-454 (636)
197 KOG2139 WD40 repeat protein [G 99.4 5.2E-11 1.1E-15 105.5 17.6 160 164-340 139-300 (445)
198 KOG0649 WD40 repeat protein [G 99.4 2E-11 4.2E-16 102.9 13.4 168 167-357 12-189 (325)
199 COG2319 FOG: WD40 repeat [Gene 99.3 5.4E-10 1.2E-14 104.5 24.6 160 166-356 110-273 (466)
200 KOG2111 Uncharacterized conser 99.3 6.5E-10 1.4E-14 97.1 22.5 160 163-355 92-257 (346)
201 KOG1538 Uncharacterized conser 99.3 4.9E-11 1.1E-15 113.0 16.6 188 154-354 42-293 (1081)
202 PRK01742 tolB translocation pr 99.3 1.1E-10 2.4E-15 112.1 19.5 161 160-357 198-364 (429)
203 PRK01742 tolB translocation pr 99.3 1.5E-10 3.2E-15 111.3 19.3 143 167-340 249-391 (429)
204 KOG2110 Uncharacterized conser 99.3 1.1E-10 2.4E-15 103.7 16.1 118 163-308 127-249 (391)
205 KOG0644 Uncharacterized conser 99.3 8.4E-12 1.8E-16 120.7 9.4 165 156-353 223-467 (1113)
206 KOG2321 WD40 repeat protein [G 99.3 8.2E-11 1.8E-15 109.8 15.3 192 159-357 45-305 (703)
207 KOG0644 Uncharacterized conser 99.3 2.9E-12 6.4E-17 123.8 5.5 118 158-307 183-300 (1113)
208 PRK04922 tolB translocation pr 99.3 9.6E-10 2.1E-14 105.8 21.6 166 161-358 199-372 (433)
209 KOG0280 Uncharacterized conser 99.3 2.9E-10 6.3E-15 98.3 15.7 177 154-357 152-336 (339)
210 KOG1524 WD40 repeat-containing 99.2 7.1E-11 1.5E-15 109.4 11.9 143 179-356 76-218 (737)
211 KOG0280 Uncharacterized conser 99.2 2E-10 4.3E-15 99.3 13.2 142 169-333 125-266 (339)
212 PRK02889 tolB translocation pr 99.2 2.6E-09 5.7E-14 102.6 22.6 162 163-353 237-402 (427)
213 PRK03629 tolB translocation pr 99.2 3.8E-09 8.3E-14 101.4 23.3 165 162-358 195-367 (429)
214 KOG0322 G-protein beta subunit 99.2 1.1E-10 2.5E-15 99.4 11.1 124 159-306 199-322 (323)
215 KOG1240 Protein kinase contain 99.2 5.7E-10 1.2E-14 112.3 17.5 185 154-357 1037-1276(1431)
216 PRK05137 tolB translocation pr 99.2 3.4E-09 7.5E-14 102.1 22.5 166 161-357 197-369 (435)
217 PRK04922 tolB translocation pr 99.2 3.1E-09 6.8E-14 102.3 22.1 160 163-355 245-412 (433)
218 PRK03629 tolB translocation pr 99.2 5E-09 1.1E-13 100.6 22.9 157 165-354 242-406 (429)
219 KOG0974 WD-repeat protein WDR6 99.2 9E-10 1.9E-14 109.3 17.8 142 179-354 146-288 (967)
220 PRK02889 tolB translocation pr 99.2 1.3E-09 2.7E-14 104.8 18.6 172 161-358 191-364 (427)
221 KOG3881 Uncharacterized conser 99.2 1.9E-09 4.2E-14 96.5 18.0 169 165-355 148-321 (412)
222 PRK05137 tolB translocation pr 99.2 3.6E-09 7.9E-14 101.9 21.4 164 162-357 242-415 (435)
223 KOG3881 Uncharacterized conser 99.2 2.6E-10 5.7E-15 102.0 12.2 139 166-331 203-342 (412)
224 KOG0309 Conserved WD40 repeat- 99.2 1.4E-10 3E-15 111.2 10.9 202 61-338 62-263 (1081)
225 KOG1963 WD40 repeat protein [G 99.2 1.6E-09 3.4E-14 105.9 18.4 122 228-357 204-325 (792)
226 KOG2139 WD40 repeat protein [G 99.2 8.1E-10 1.8E-14 98.1 14.8 158 165-353 98-267 (445)
227 KOG2321 WD40 repeat protein [G 99.2 1.5E-09 3.3E-14 101.5 16.6 160 163-340 173-333 (703)
228 KOG4227 WD40 repeat protein [G 99.2 5.3E-10 1.2E-14 100.1 12.9 153 160-336 100-260 (609)
229 PRK11028 6-phosphogluconolacto 99.2 1.3E-08 2.9E-13 94.4 22.8 170 160-354 29-205 (330)
230 PRK01029 tolB translocation pr 99.1 2.4E-08 5.2E-13 95.7 23.7 168 164-357 229-406 (428)
231 KOG1272 WD40-repeat-containing 99.1 1.1E-10 2.3E-15 106.5 6.7 158 162-355 167-324 (545)
232 PRK11028 6-phosphogluconolacto 99.1 4.1E-08 8.8E-13 91.1 23.8 172 163-355 77-259 (330)
233 KOG1963 WD40 repeat protein [G 99.1 4.8E-09 1E-13 102.6 17.1 165 163-356 203-377 (792)
234 KOG1334 WD40 repeat protein [G 99.1 3.7E-10 7.9E-15 103.7 8.6 171 157-355 134-313 (559)
235 KOG0974 WD-repeat protein WDR6 99.1 2.2E-09 4.7E-14 106.7 14.4 120 160-309 170-290 (967)
236 KOG1354 Serine/threonine prote 99.1 7E-09 1.5E-13 91.7 15.1 254 56-358 74-363 (433)
237 PRK00178 tolB translocation pr 99.1 5.3E-08 1.2E-12 93.7 22.8 167 161-358 194-367 (430)
238 TIGR02800 propeller_TolB tol-p 99.0 3.8E-08 8.2E-13 94.3 20.5 166 161-357 185-357 (417)
239 TIGR02800 propeller_TolB tol-p 99.0 7E-08 1.5E-12 92.4 22.3 158 163-353 231-396 (417)
240 KOG4190 Uncharacterized conser 99.0 1.4E-09 3.1E-14 101.3 9.5 178 155-358 725-910 (1034)
241 KOG1517 Guanine nucleotide bin 99.0 7.4E-09 1.6E-13 103.1 14.9 159 171-356 1171-1335(1387)
242 KOG4547 WD40 repeat-containing 99.0 5.8E-08 1.3E-12 91.4 19.6 143 178-353 70-219 (541)
243 KOG4547 WD40 repeat-containing 99.0 8.4E-08 1.8E-12 90.3 19.0 146 89-309 70-222 (541)
244 KOG0309 Conserved WD40 repeat- 98.9 1.7E-09 3.8E-14 103.8 7.8 163 167-355 69-233 (1081)
245 KOG1064 RAVE (regulator of V-A 98.9 4.9E-09 1.1E-13 109.2 10.1 155 154-355 2241-2399(2439)
246 PRK04792 tolB translocation pr 98.9 3.6E-07 7.7E-12 88.3 22.3 167 161-357 213-385 (448)
247 PRK04792 tolB translocation pr 98.9 3E-07 6.5E-12 88.8 21.3 158 166-354 262-425 (448)
248 PRK00178 tolB translocation pr 98.9 5.5E-07 1.2E-11 86.7 22.7 158 165-354 242-406 (430)
249 KOG0771 Prolactin regulatory e 98.9 3.8E-08 8.2E-13 89.2 12.8 143 159-308 180-355 (398)
250 KOG1354 Serine/threonine prote 98.9 1.3E-08 2.8E-13 90.1 9.3 185 164-355 83-302 (433)
251 KOG4532 WD40-like repeat conta 98.8 4.3E-07 9.3E-12 78.1 17.5 99 232-333 161-263 (344)
252 PRK01029 tolB translocation pr 98.8 2.4E-06 5.1E-11 82.1 22.2 167 164-358 183-363 (428)
253 KOG1409 Uncharacterized conser 98.8 1.3E-07 2.8E-12 83.8 12.2 86 154-261 186-271 (404)
254 KOG4714 Nucleoporin [Nuclear s 98.7 3.5E-08 7.5E-13 84.3 7.3 149 179-355 102-255 (319)
255 KOG2695 WD40 repeat protein [G 98.7 4.1E-08 9E-13 86.9 7.3 146 164-330 251-402 (425)
256 KOG4497 Uncharacterized conser 98.7 1.4E-07 3.1E-12 83.1 9.6 140 170-339 13-152 (447)
257 KOG3914 WD repeat protein WDR4 98.7 7.5E-07 1.6E-11 80.5 14.0 86 224-316 146-231 (390)
258 KOG2041 WD40 repeat protein [G 98.6 2.5E-07 5.4E-12 89.1 11.4 175 162-353 11-185 (1189)
259 KOG1334 WD40 repeat protein [G 98.6 8.8E-08 1.9E-12 88.3 8.0 190 159-355 226-467 (559)
260 PF02239 Cytochrom_D1: Cytochr 98.6 1.3E-05 2.8E-10 75.3 22.8 162 169-357 40-205 (369)
261 KOG1409 Uncharacterized conser 98.6 3E-07 6.6E-12 81.5 10.7 196 154-356 13-272 (404)
262 KOG1240 Protein kinase contain 98.6 1E-05 2.2E-10 82.5 22.5 224 85-357 1057-1337(1431)
263 PF00400 WD40: WD domain, G-be 98.6 5.8E-08 1.3E-12 59.7 4.2 38 220-258 2-39 (39)
264 PRK04043 tolB translocation pr 98.6 2E-05 4.4E-10 75.3 23.0 158 164-354 231-400 (419)
265 PF00400 WD40: WD domain, G-be 98.6 1.3E-07 2.8E-12 58.1 4.9 35 270-305 5-39 (39)
266 KOG4532 WD40-like repeat conta 98.6 5.2E-06 1.1E-10 71.6 16.0 150 168-338 161-320 (344)
267 KOG3914 WD repeat protein WDR4 98.6 1.1E-06 2.5E-11 79.4 12.6 160 166-357 63-226 (390)
268 KOG2315 Predicted translation 98.5 1.6E-05 3.5E-10 74.9 19.9 115 229-355 270-391 (566)
269 KOG4497 Uncharacterized conser 98.5 4.2E-07 9.1E-12 80.2 8.8 104 166-296 49-152 (447)
270 COG5170 CDC55 Serine/threonine 98.5 2.3E-06 4.9E-11 75.1 13.0 155 162-338 169-355 (460)
271 KOG1064 RAVE (regulator of V-A 98.5 6.3E-07 1.4E-11 94.1 11.1 159 164-357 2207-2369(2439)
272 PLN02919 haloacid dehalogenase 98.5 1.1E-05 2.4E-10 85.4 20.3 175 169-358 686-892 (1057)
273 KOG2066 Vacuolar assembly/sort 98.5 2.3E-06 5.1E-11 83.6 12.6 158 154-357 21-190 (846)
274 KOG1275 PAB-dependent poly(A) 98.5 7.9E-06 1.7E-10 81.0 16.2 152 168-355 180-343 (1118)
275 PF02239 Cytochrom_D1: Cytochr 98.4 2.6E-05 5.6E-10 73.3 17.7 133 180-340 8-147 (369)
276 KOG4714 Nucleoporin [Nuclear s 98.4 7.5E-07 1.6E-11 76.3 6.1 75 231-308 181-255 (319)
277 PRK04043 tolB translocation pr 98.4 0.00013 2.9E-09 69.7 22.2 162 166-358 188-361 (419)
278 PF10282 Lactonase: Lactonase, 98.3 0.0002 4.4E-09 66.9 22.5 172 162-354 33-222 (345)
279 COG5170 CDC55 Serine/threonine 98.3 2.3E-06 4.9E-11 75.2 8.1 185 165-356 85-311 (460)
280 KOG2315 Predicted translation 98.3 0.00012 2.5E-09 69.3 19.6 164 163-355 163-345 (566)
281 KOG1912 WD40 repeat protein [G 98.3 1.8E-05 4E-10 77.2 14.6 140 165-333 15-168 (1062)
282 COG4946 Uncharacterized protei 98.3 5.8E-05 1.3E-09 70.0 17.1 146 162-338 356-506 (668)
283 KOG2695 WD40 repeat protein [G 98.3 2.8E-06 6.1E-11 75.6 8.4 118 228-357 251-379 (425)
284 KOG1832 HIV-1 Vpr-binding prot 98.3 5.4E-07 1.2E-11 88.7 3.4 149 159-340 1137-1286(1516)
285 PF04762 IKI3: IKI3 family; I 98.3 0.00017 3.6E-09 75.4 21.7 178 164-355 119-334 (928)
286 PF10282 Lactonase: Lactonase, 98.2 0.00016 3.4E-09 67.6 19.4 172 166-357 144-327 (345)
287 PF11768 DUF3312: Protein of u 98.2 5.1E-05 1.1E-09 72.4 14.8 117 233-358 209-333 (545)
288 KOG1645 RING-finger-containing 98.2 6.1E-06 1.3E-10 74.8 8.1 92 220-316 184-275 (463)
289 PF11768 DUF3312: Protein of u 98.2 5.8E-05 1.3E-09 72.1 14.8 108 157-289 251-370 (545)
290 COG5354 Uncharacterized protei 98.2 0.00052 1.1E-08 64.4 20.6 119 227-356 272-397 (561)
291 KOG2066 Vacuolar assembly/sort 98.2 8.8E-05 1.9E-09 72.9 15.8 150 160-340 53-226 (846)
292 KOG1832 HIV-1 Vpr-binding prot 98.1 2.8E-06 6.1E-11 83.8 5.5 156 160-355 1096-1256(1516)
293 COG2706 3-carboxymuconate cycl 98.1 0.00084 1.8E-08 60.5 20.5 173 159-355 33-222 (346)
294 KOG4190 Uncharacterized conser 98.1 1.7E-05 3.7E-10 74.7 8.9 136 154-317 773-915 (1034)
295 PLN02919 haloacid dehalogenase 98.1 0.00037 8E-09 74.1 19.5 180 168-358 626-837 (1057)
296 PF15492 Nbas_N: Neuroblastoma 98.0 0.0012 2.6E-08 57.9 18.7 168 167-357 45-262 (282)
297 COG4946 Uncharacterized protei 98.0 0.001 2.3E-08 62.0 18.0 124 226-358 356-481 (668)
298 PF04762 IKI3: IKI3 family; I 97.9 0.0014 3E-08 68.7 20.4 174 154-353 245-455 (928)
299 COG2706 3-carboxymuconate cycl 97.8 0.0042 9.1E-08 56.1 19.5 162 169-353 92-273 (346)
300 COG0823 TolB Periplasmic compo 97.8 0.0021 4.5E-08 61.5 18.0 165 164-356 191-360 (425)
301 KOG1008 Uncharacterized conser 97.8 8E-06 1.7E-10 78.2 1.1 168 162-354 99-275 (783)
302 KOG2314 Translation initiation 97.8 0.0004 8.7E-09 65.8 12.2 137 168-337 213-363 (698)
303 COG0823 TolB Periplasmic compo 97.8 0.0013 2.7E-08 62.9 15.7 216 46-341 172-390 (425)
304 PF08553 VID27: VID27 cytoplas 97.7 0.0016 3.4E-08 66.1 16.0 124 219-352 514-645 (794)
305 KOG2041 WD40 repeat protein [G 97.7 0.00029 6.4E-09 68.6 10.0 108 231-340 16-135 (1189)
306 COG5354 Uncharacterized protei 97.7 0.0033 7.3E-08 59.1 16.5 158 165-354 173-348 (561)
307 KOG2314 Translation initiation 97.6 0.0044 9.6E-08 59.0 17.1 129 219-354 436-573 (698)
308 KOG1912 WD40 repeat protein [G 97.6 0.0012 2.7E-08 64.9 13.6 127 156-307 46-186 (1062)
309 KOG1008 Uncharacterized conser 97.6 2.4E-05 5.1E-10 75.1 1.7 161 166-353 57-224 (783)
310 KOG1645 RING-finger-containing 97.6 0.00071 1.5E-08 61.8 10.8 83 162-266 190-272 (463)
311 PF08450 SGL: SMP-30/Gluconola 97.6 0.0083 1.8E-07 53.0 17.8 148 164-338 84-243 (246)
312 KOG4640 Anaphase-promoting com 97.6 0.00038 8.2E-09 66.9 9.1 96 164-286 19-115 (665)
313 KOG4640 Anaphase-promoting com 97.5 0.00051 1.1E-08 66.1 9.1 94 229-330 20-115 (665)
314 smart00320 WD40 WD40 repeats. 97.5 0.00027 5.8E-09 41.5 4.8 38 220-258 3-40 (40)
315 KOG1920 IkappaB kinase complex 97.5 0.019 4.1E-07 59.6 20.3 181 165-355 109-323 (1265)
316 KOG0882 Cyclophilin-related pe 97.4 0.00094 2E-08 61.8 9.5 170 159-358 47-235 (558)
317 PF08450 SGL: SMP-30/Gluconola 97.3 0.046 9.9E-07 48.3 18.6 150 170-354 4-164 (246)
318 TIGR02658 TTQ_MADH_Hv methylam 97.3 0.17 3.6E-06 47.1 23.7 114 238-358 202-334 (352)
319 PF03178 CPSF_A: CPSF A subuni 97.2 0.032 7E-07 51.4 17.9 121 159-307 82-202 (321)
320 KOG2114 Vacuolar assembly/sort 97.2 0.029 6.2E-07 56.3 17.7 158 159-338 58-233 (933)
321 KOG2395 Protein involved in va 97.2 0.006 1.3E-07 57.9 12.4 116 219-340 366-491 (644)
322 KOG3621 WD40 repeat-containing 97.2 0.004 8.7E-08 60.8 11.2 140 167-329 35-179 (726)
323 KOG1275 PAB-dependent poly(A) 97.2 0.0034 7.4E-08 63.0 10.8 126 156-307 208-342 (1118)
324 smart00320 WD40 WD40 repeats. 97.2 0.0015 3.2E-08 38.1 5.6 35 159-194 6-40 (40)
325 KOG3617 WD40 and TPR repeat-co 97.1 0.001 2.2E-08 66.1 6.7 106 234-353 20-130 (1416)
326 KOG3617 WD40 and TPR repeat-co 97.1 0.0023 5E-08 63.7 8.5 71 167-260 61-131 (1416)
327 PF07433 DUF1513: Protein of u 97.0 0.084 1.8E-06 47.7 17.3 164 159-358 50-251 (305)
328 KOG0882 Cyclophilin-related pe 97.0 0.0046 1E-07 57.4 9.3 165 162-354 6-174 (558)
329 KOG2114 Vacuolar assembly/sort 96.9 0.22 4.8E-06 50.3 20.1 158 155-340 108-273 (933)
330 KOG3621 WD40 repeat-containing 96.7 0.012 2.6E-07 57.6 10.3 105 231-340 35-144 (726)
331 PF14783 BBS2_Mid: Ciliary BBS 96.6 0.12 2.7E-06 39.2 12.9 102 168-302 2-109 (111)
332 PF08553 VID27: VID27 cytoplas 96.6 0.052 1.1E-06 55.4 13.7 103 180-306 544-646 (794)
333 PF15390 DUF4613: Domain of un 96.6 0.11 2.4E-06 50.4 15.1 124 227-354 54-186 (671)
334 KOG1920 IkappaB kinase complex 96.5 0.15 3.2E-06 53.4 16.4 160 166-354 69-274 (1265)
335 TIGR02658 TTQ_MADH_Hv methylam 96.5 0.13 2.8E-06 47.9 14.8 105 188-317 27-145 (352)
336 PF04053 Coatomer_WDAD: Coatom 96.4 0.27 5.9E-06 47.4 17.2 134 163-340 30-164 (443)
337 PF06977 SdiA-regulated: SdiA- 96.2 0.79 1.7E-05 40.5 18.4 163 161-352 17-199 (248)
338 PF02897 Peptidase_S9_N: Proly 96.1 1.4 3E-05 42.1 22.6 71 287-358 335-408 (414)
339 PF07433 DUF1513: Protein of u 96.1 0.9 1.9E-05 41.2 17.4 148 167-338 6-180 (305)
340 PF15492 Nbas_N: Neuroblastoma 96.0 0.1 2.2E-06 46.0 11.0 40 275-316 228-267 (282)
341 PF06977 SdiA-regulated: SdiA- 96.0 1.1 2.3E-05 39.7 19.4 168 165-351 64-247 (248)
342 PF12894 Apc4_WD40: Anaphase-p 96.0 0.025 5.3E-07 36.0 5.1 31 276-307 11-41 (47)
343 PF13360 PQQ_2: PQQ-like domai 95.9 0.99 2.2E-05 39.1 18.6 101 241-358 122-234 (238)
344 KOG3630 Nuclear pore complex, 95.9 0.13 2.7E-06 53.5 12.3 152 166-337 101-260 (1405)
345 TIGR03300 assembly_YfgL outer 95.8 0.49 1.1E-05 44.6 15.8 110 180-322 243-352 (377)
346 KOG2444 WD40 repeat protein [G 95.8 0.034 7.4E-07 47.5 6.8 102 244-354 72-177 (238)
347 KOG2395 Protein involved in va 95.8 0.15 3.3E-06 48.7 11.6 128 155-308 366-501 (644)
348 PF02897 Peptidase_S9_N: Proly 95.7 0.82 1.8E-05 43.7 16.9 117 168-309 126-262 (414)
349 KOG4649 PQQ (pyrrolo-quinoline 95.7 0.73 1.6E-05 40.4 14.4 126 174-330 19-145 (354)
350 COG3391 Uncharacterized conser 95.6 1.4 3E-05 41.8 17.7 159 167-357 75-242 (381)
351 PF08728 CRT10: CRT10; InterP 95.5 0.21 4.7E-06 50.2 12.3 138 164-306 99-245 (717)
352 KOG2079 Vacuolar assembly/sort 95.5 0.066 1.4E-06 55.2 8.7 96 179-300 100-198 (1206)
353 TIGR03300 assembly_YfgL outer 95.5 0.84 1.8E-05 43.0 15.9 104 179-316 66-171 (377)
354 PF13360 PQQ_2: PQQ-like domai 95.4 0.11 2.3E-06 45.3 9.1 103 244-358 38-144 (238)
355 PF12894 Apc4_WD40: Anaphase-p 95.4 0.052 1.1E-06 34.5 5.1 33 164-197 10-42 (47)
356 KOG2444 WD40 repeat protein [G 95.4 0.056 1.2E-06 46.2 6.6 106 179-309 71-179 (238)
357 PF14783 BBS2_Mid: Ciliary BBS 95.3 0.9 2E-05 34.5 13.4 82 236-330 9-90 (111)
358 PF15390 DUF4613: Domain of un 95.3 0.88 1.9E-05 44.5 15.0 129 160-309 51-188 (671)
359 PF08596 Lgl_C: Lethal giant l 95.3 0.59 1.3E-05 44.4 13.9 130 164-309 85-245 (395)
360 KOG2377 Uncharacterized conser 95.2 1.5 3.2E-05 41.6 15.9 161 154-338 5-171 (657)
361 PF14870 PSII_BNR: Photosynthe 95.2 0.54 1.2E-05 42.8 13.0 149 162-339 141-294 (302)
362 COG3391 Uncharacterized conser 95.0 3.3 7.1E-05 39.2 18.8 163 167-357 117-286 (381)
363 PF08596 Lgl_C: Lethal giant l 95.0 0.26 5.7E-06 46.8 10.8 136 167-307 3-173 (395)
364 KOG3630 Nuclear pore complex, 95.0 0.2 4.3E-06 52.2 10.2 176 167-353 43-227 (1405)
365 PRK02888 nitrous-oxide reducta 94.9 2.8 6.1E-05 41.8 17.5 76 230-308 321-405 (635)
366 PF03178 CPSF_A: CPSF A subuni 94.7 3 6.6E-05 38.3 17.0 165 57-304 79-262 (321)
367 KOG1916 Nuclear protein, conta 94.6 0.05 1.1E-06 55.0 5.0 137 162-321 129-283 (1283)
368 PF04053 Coatomer_WDAD: Coatom 94.5 0.38 8.2E-06 46.4 10.6 134 165-340 68-214 (443)
369 PF10647 Gmad1: Lipoprotein Lp 94.5 3.3 7.2E-05 36.7 16.1 148 167-341 25-186 (253)
370 KOG2079 Vacuolar assembly/sort 94.4 0.13 2.8E-06 53.1 7.4 90 244-338 101-193 (1206)
371 PRK10115 protease 2; Provision 94.2 7.6 0.00016 39.9 24.0 52 46-111 109-160 (686)
372 PRK02888 nitrous-oxide reducta 94.2 1.8 3.9E-05 43.1 14.5 96 251-355 295-405 (635)
373 PF12657 TFIIIC_delta: Transcr 94.2 0.31 6.8E-06 40.6 8.2 31 278-308 87-122 (173)
374 PF10313 DUF2415: Uncharacteri 94.1 0.19 4.2E-06 31.0 5.0 33 277-309 1-35 (43)
375 PF00780 CNH: CNH domain; Int 93.7 4.8 0.0001 35.9 17.0 144 179-356 8-167 (275)
376 PF10168 Nup88: Nuclear pore c 93.5 3.5 7.7E-05 42.3 15.8 86 230-316 85-188 (717)
377 PF05694 SBP56: 56kDa selenium 93.5 0.93 2E-05 43.0 10.7 133 187-340 221-393 (461)
378 PRK13616 lipoprotein LpqB; Pro 93.5 3.1 6.8E-05 41.8 15.2 103 232-337 399-513 (591)
379 COG3490 Uncharacterized protei 93.1 6.2 0.00013 35.4 16.5 104 165-294 67-178 (366)
380 COG3490 Uncharacterized protei 93.1 1.3 2.7E-05 39.5 10.2 102 231-338 69-179 (366)
381 COG3386 Gluconolactonase [Carb 93.0 4.3 9.4E-05 37.2 14.2 112 222-336 155-271 (307)
382 TIGR02604 Piru_Ver_Nterm putat 92.9 7.9 0.00017 36.4 16.4 109 224-339 66-202 (367)
383 PF00930 DPPIV_N: Dipeptidyl p 92.6 3.7 8.1E-05 38.3 13.8 104 234-341 239-348 (353)
384 COG5167 VID27 Protein involved 92.6 3.2 6.8E-05 40.1 12.7 115 219-340 500-623 (776)
385 PF10313 DUF2415: Uncharacteri 92.4 0.43 9.3E-06 29.5 4.7 32 166-197 1-34 (43)
386 PF12234 Rav1p_C: RAVE protein 91.9 5.8 0.00013 39.9 14.4 103 231-339 31-147 (631)
387 PF12234 Rav1p_C: RAVE protein 91.4 5.1 0.00011 40.3 13.5 117 166-307 30-156 (631)
388 PF14583 Pectate_lyase22: Olig 91.1 7 0.00015 36.7 13.3 150 165-343 187-373 (386)
389 COG3386 Gluconolactonase [Carb 91.0 12 0.00027 34.2 15.4 141 172-340 31-182 (307)
390 KOG2247 WD40 repeat-containing 90.7 0.056 1.2E-06 51.2 -0.8 140 170-340 39-179 (615)
391 PRK13616 lipoprotein LpqB; Pro 90.3 3 6.5E-05 41.9 10.9 99 230-339 350-466 (591)
392 PF12657 TFIIIC_delta: Transcr 90.0 4.6 9.9E-05 33.5 10.3 31 231-261 87-122 (173)
393 PF12768 Rax2: Cortical protei 90.0 3.9 8.5E-05 36.9 10.4 96 252-355 16-124 (281)
394 KOG2377 Uncharacterized conser 89.8 2.1 4.5E-05 40.7 8.5 121 164-308 65-186 (657)
395 KOG1916 Nuclear protein, conta 89.0 0.77 1.7E-05 46.9 5.5 88 154-264 168-269 (1283)
396 KOG1897 Damage-specific DNA bi 88.8 34 0.00074 36.0 20.4 179 50-307 753-942 (1096)
397 PRK13684 Ycf48-like protein; P 88.7 20 0.00043 33.3 16.9 157 165-354 172-331 (334)
398 PF00930 DPPIV_N: Dipeptidyl p 88.5 21 0.00046 33.3 17.3 106 170-298 239-349 (353)
399 KOG4499 Ca2+-binding protein R 88.5 16 0.00035 31.9 17.5 98 233-332 161-265 (310)
400 KOG4460 Nuclear pore complex, 88.0 6.8 0.00015 38.0 10.7 78 231-309 105-200 (741)
401 PF05096 Glu_cyclase_2: Glutam 87.7 20 0.00043 32.0 13.9 133 179-340 102-250 (264)
402 PF14655 RAB3GAP2_N: Rab3 GTPa 87.6 12 0.00026 35.7 12.4 89 222-316 300-406 (415)
403 TIGR02276 beta_rpt_yvtn 40-res 86.2 3.1 6.7E-05 25.0 5.3 32 286-318 1-32 (42)
404 PRK11138 outer membrane biogen 85.9 32 0.00069 32.6 14.9 63 244-316 122-186 (394)
405 PF04841 Vps16_N: Vps16, N-ter 85.5 35 0.00076 32.7 22.7 57 276-334 216-273 (410)
406 PF04841 Vps16_N: Vps16, N-ter 85.5 35 0.00076 32.7 18.3 39 220-260 71-109 (410)
407 PF10647 Gmad1: Lipoprotein Lp 84.9 27 0.00059 30.9 14.0 101 231-340 25-131 (253)
408 PRK11138 outer membrane biogen 84.3 38 0.00082 32.1 15.9 69 244-319 296-364 (394)
409 PF08728 CRT10: CRT10; InterP 83.5 57 0.0012 33.5 18.3 123 232-356 103-252 (717)
410 PRK10115 protease 2; Provision 83.2 60 0.0013 33.5 17.9 117 166-308 127-256 (686)
411 PF14655 RAB3GAP2_N: Rab3 GTPa 81.7 17 0.00037 34.8 10.5 38 159-197 301-338 (415)
412 PF11715 Nup160: Nucleoporin N 81.7 8.2 0.00018 38.5 9.0 39 277-316 215-256 (547)
413 COG5167 VID27 Protein involved 81.4 27 0.00058 34.1 11.4 62 241-308 572-633 (776)
414 KOG1896 mRNA cleavage and poly 80.7 66 0.0014 34.8 14.8 122 159-307 1091-1213(1366)
415 COG3204 Uncharacterized protei 80.6 38 0.00082 30.6 11.4 109 227-340 83-200 (316)
416 KOG4499 Ca2+-binding protein R 80.5 35 0.00075 29.9 10.8 110 167-297 159-275 (310)
417 PF07676 PD40: WD40-like Beta 80.2 5.7 0.00012 23.5 4.6 30 275-304 7-38 (39)
418 PF07569 Hira: TUP1-like enhan 79.7 14 0.0003 32.1 8.5 75 176-266 21-100 (219)
419 PF07569 Hira: TUP1-like enhan 79.2 15 0.00034 31.7 8.7 66 240-309 21-97 (219)
420 COG3204 Uncharacterized protei 78.9 50 0.0011 29.9 15.8 153 163-340 83-253 (316)
421 KOG4649 PQQ (pyrrolo-quinoline 78.9 44 0.00095 29.7 11.1 104 240-355 21-124 (354)
422 PF07676 PD40: WD40-like Beta 78.1 11 0.00024 22.2 5.5 34 160-193 3-38 (39)
423 PF07995 GSDH: Glucose / Sorbo 77.5 44 0.00096 30.9 11.8 26 168-195 4-29 (331)
424 PHA02713 hypothetical protein; 77.0 84 0.0018 31.5 15.4 95 253-356 433-535 (557)
425 PF06433 Me-amine-dh_H: Methyl 76.6 22 0.00047 32.9 9.1 54 301-358 271-324 (342)
426 PF14870 PSII_BNR: Photosynthe 74.8 68 0.0015 29.3 16.7 106 227-339 142-251 (302)
427 KOG2247 WD40 repeat-containing 74.6 0.66 1.4E-05 44.3 -1.1 109 163-301 72-182 (615)
428 PF10168 Nup88: Nuclear pore c 74.4 21 0.00045 36.9 9.3 95 163-262 82-181 (717)
429 PF14727 PHTB1_N: PTHB1 N-term 74.2 85 0.0019 30.1 13.6 141 176-338 35-192 (418)
430 KOG4460 Nuclear pore complex, 74.1 38 0.00081 33.2 10.2 76 276-356 103-200 (741)
431 PF14583 Pectate_lyase22: Olig 73.7 83 0.0018 29.8 16.6 82 276-357 187-275 (386)
432 KOG1897 Damage-specific DNA bi 73.5 1.3E+02 0.0028 32.0 16.9 89 244-338 841-931 (1096)
433 TIGR03118 PEPCTERM_chp_1 conse 72.7 77 0.0017 29.0 12.4 127 167-308 24-171 (336)
434 cd00216 PQQ_DH Dehydrogenases 72.1 1E+02 0.0022 30.3 13.4 19 244-262 303-321 (488)
435 cd00216 PQQ_DH Dehydrogenases 71.7 1.1E+02 0.0023 30.1 14.5 19 244-262 112-130 (488)
436 PHA03098 kelch-like protein; P 71.5 1.1E+02 0.0024 30.3 16.1 106 244-356 392-513 (534)
437 PF00780 CNH: CNH domain; Int 71.1 74 0.0016 28.1 21.4 127 168-309 38-167 (275)
438 COG5276 Uncharacterized conser 68.3 95 0.0021 28.3 21.9 149 159-336 80-229 (370)
439 TIGR02604 Piru_Ver_Nterm putat 67.9 77 0.0017 29.7 11.2 103 232-339 16-142 (367)
440 TIGR02276 beta_rpt_yvtn 40-res 64.7 27 0.00058 20.6 5.2 23 175-197 1-23 (42)
441 PF07995 GSDH: Glucose / Sorbo 64.0 72 0.0016 29.5 10.0 104 232-338 4-131 (331)
442 PF05694 SBP56: 56kDa selenium 62.3 1.5E+02 0.0033 28.5 18.8 53 277-331 181-255 (461)
443 KOG1900 Nuclear pore complex, 61.3 1.5E+02 0.0033 32.5 12.4 72 276-355 178-273 (1311)
444 PF03088 Str_synth: Strictosid 60.7 63 0.0014 23.5 9.1 54 294-351 32-85 (89)
445 KOG4441 Proteins containing BT 59.1 1.9E+02 0.0041 29.2 12.5 106 244-356 430-548 (571)
446 PF12768 Rax2: Cortical protei 58.6 1.4E+02 0.0031 26.9 11.6 74 229-308 36-124 (281)
447 PF14761 HPS3_N: Hermansky-Pud 56.4 1.3E+02 0.0029 25.9 10.3 105 179-309 30-165 (215)
448 PF01436 NHL: NHL repeat; Int 51.1 38 0.00082 18.4 3.6 23 280-303 5-27 (28)
449 PF14781 BBS2_N: Ciliary BBSom 50.2 1.3E+02 0.0028 23.9 13.2 118 170-308 3-126 (136)
450 COG5290 IkappaB kinase complex 49.9 26 0.00055 36.0 4.5 107 164-296 245-356 (1243)
451 KOG2280 Vacuolar assembly/sort 49.4 3.2E+02 0.007 28.3 15.0 56 277-335 217-274 (829)
452 KOG1900 Nuclear pore complex, 49.2 2.3E+02 0.0051 31.1 11.5 35 227-262 240-274 (1311)
453 PF14727 PHTB1_N: PTHB1 N-term 47.9 2.6E+02 0.0057 26.9 14.4 59 32-112 47-105 (418)
454 TIGR02171 Fb_sc_TIGR02171 Fibr 47.1 1.8E+02 0.0039 30.8 10.1 67 226-296 346-418 (912)
455 PF14779 BBS1: Ciliary BBSome 46.3 1.4E+02 0.003 26.6 8.1 35 163-197 174-214 (257)
456 PF01731 Arylesterase: Arylest 46.2 63 0.0014 23.4 5.1 32 277-308 54-85 (86)
457 PHA03098 kelch-like protein; P 45.9 3.1E+02 0.0067 27.1 13.1 61 244-309 345-416 (534)
458 TIGR03118 PEPCTERM_chp_1 conse 45.2 2.5E+02 0.0054 25.8 13.1 119 231-356 24-172 (336)
459 PF10214 Rrn6: RNA polymerase 44.9 3.9E+02 0.0085 28.0 26.0 158 163-331 77-257 (765)
460 PRK13684 Ycf48-like protein; P 44.8 2.6E+02 0.0056 25.9 12.2 100 230-338 173-277 (334)
461 PHA02713 hypothetical protein; 43.8 3.5E+02 0.0076 27.1 13.4 62 244-309 466-535 (557)
462 PF06433 Me-amine-dh_H: Methyl 43.5 81 0.0018 29.3 6.5 40 277-317 289-329 (342)
463 PF14761 HPS3_N: Hermansky-Pud 43.4 1.2E+02 0.0025 26.2 7.0 46 291-338 31-77 (215)
464 PF12341 DUF3639: Protein of u 41.5 62 0.0013 17.8 3.4 25 167-194 3-27 (27)
465 KOG3522 Predicted guanine nucl 41.4 1.8E+02 0.0038 30.5 8.9 101 231-339 583-687 (925)
466 KOG1898 Splicing factor 3b, su 40.4 5.1E+02 0.011 28.1 12.0 35 164-198 58-95 (1205)
467 KOG2280 Vacuolar assembly/sort 39.7 3.2E+02 0.007 28.3 10.3 39 220-260 74-112 (829)
468 PF13449 Phytase-like: Esteras 39.1 3.1E+02 0.0067 25.2 19.7 179 164-353 18-248 (326)
469 TIGR03606 non_repeat_PQQ dehyd 38.6 3.8E+02 0.0083 26.1 19.5 35 162-197 26-60 (454)
470 PLN00033 photosystem II stabil 38.1 3.7E+02 0.0079 25.7 17.9 103 230-339 281-389 (398)
471 PF01731 Arylesterase: Arylest 36.1 69 0.0015 23.2 3.9 33 165-197 53-85 (86)
472 PF10214 Rrn6: RNA polymerase 36.0 5.4E+02 0.012 27.0 23.7 129 166-308 146-277 (765)
473 smart00564 PQQ beta-propeller 34.2 85 0.0018 17.2 3.9 22 291-313 8-29 (33)
474 PF14269 Arylsulfotran_2: Aryl 34.1 1.8E+02 0.004 26.5 7.4 72 166-260 144-220 (299)
475 COG4590 ABC-type uncharacteriz 33.5 3.4E+02 0.0075 26.4 9.0 154 163-338 218-375 (733)
476 COG5290 IkappaB kinase complex 31.7 2.3E+02 0.0051 29.5 7.9 92 233-332 250-348 (1243)
477 PF01011 PQQ: PQQ enzyme repea 31.6 1.1E+02 0.0024 17.8 4.2 26 291-317 2-27 (38)
478 PF11715 Nup160: Nucleoporin N 31.1 97 0.0021 30.8 5.5 34 166-199 215-251 (547)
479 KOG3616 Selective LIM binding 30.1 1.6E+02 0.0035 30.4 6.6 66 231-305 16-81 (1636)
480 KOG2109 WD40 repeat protein [G 29.8 34 0.00074 34.3 1.9 94 244-352 254-347 (788)
481 PF03088 Str_synth: Strictosid 28.9 79 0.0017 23.0 3.3 52 245-301 30-81 (89)
482 PF13570 PQQ_3: PQQ-like domai 28.2 83 0.0018 18.5 2.9 18 243-260 22-39 (40)
483 TIGR02171 Fb_sc_TIGR02171 Fibr 28.0 4.5E+02 0.0097 28.1 9.5 79 252-336 329-414 (912)
484 COG4257 Vgb Streptogramin lyas 27.2 4.8E+02 0.01 23.7 13.7 157 166-355 62-219 (353)
485 TIGR03075 PQQ_enz_alc_DH PQQ-d 26.5 6.5E+02 0.014 25.0 15.9 68 244-316 122-197 (527)
486 KOG1898 Splicing factor 3b, su 25.6 9E+02 0.02 26.4 12.6 96 231-333 935-1032(1205)
487 COG2133 Glucose/sorbosone dehy 24.7 2.4E+02 0.0052 27.0 6.5 20 321-340 367-386 (399)
488 PF11635 Med16: Mediator compl 23.7 8.6E+02 0.019 25.5 13.7 71 230-302 260-345 (753)
489 KOG3616 Selective LIM binding 23.6 1.6E+02 0.0034 30.5 5.2 33 276-309 14-46 (1636)
490 PF10636 hemP: Hemin uptake pr 22.8 1.6E+02 0.0034 17.7 3.1 23 160-183 15-37 (38)
491 PF13449 Phytase-like: Esteras 22.4 6.1E+02 0.013 23.2 12.6 107 230-340 20-166 (326)
492 TIGR03075 PQQ_enz_alc_DH PQQ-d 22.0 7.9E+02 0.017 24.4 15.1 27 291-318 474-500 (527)
493 PF08149 BING4CT: BING4CT (NUC 21.3 1.2E+02 0.0026 21.6 2.9 29 275-304 8-36 (80)
494 smart00036 CNH Domain found in 21.2 6.2E+02 0.013 22.9 15.2 36 162-197 39-74 (302)
495 KOG3522 Predicted guanine nucl 21.1 3E+02 0.0065 28.9 6.7 74 229-309 626-699 (925)
496 PF06524 NOA36: NOA36 protein; 20.7 71 0.0015 28.2 2.0 19 55-73 170-189 (314)
497 PHA02790 Kelch-like protein; P 20.4 8.1E+02 0.017 23.9 11.8 146 177-357 271-426 (480)
498 KOG1520 Predicted alkaloid syn 20.2 7.4E+02 0.016 23.4 13.2 52 296-351 196-247 (376)
499 KOG4441 Proteins containing BT 20.2 9E+02 0.019 24.4 15.4 61 244-309 383-454 (571)
No 1
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=100.00 E-value=3.7e-65 Score=445.41 Aligned_cols=298 Identities=51% Similarity=0.894 Sum_probs=262.6
Q ss_pred CCCCeeeeCCcc-cCCCCceeeeChhHhhhhhcccccCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEE
Q 018235 31 SLPTKVWQPGVD-KLEEGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVF 109 (359)
Q Consensus 31 ~~~~~~~~~~~~-~~~~~~~l~~~~~~Y~~~~~~~~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~ 109 (359)
....++|+||.. +|++||||++||++|.|+|.++.+|||||||++||.+|.+|+.||++.|+|+|||+.....|.|.||
T Consensus 33 ~d~~~~~lpg~~~~l~~~EeL~~DpsaYe~lH~~~~gwPcLsfDVi~D~LG~eR~e~P~~~Ylv~gtQa~~~~~N~l~vl 112 (440)
T KOG0302|consen 33 EDGAQVYLPGMSRPLGDDEELVADPSAYEMLHNFNSGWPCLSFDVIPDRLGDERTEFPHTAYLVAGTQALDAPDNELMVL 112 (440)
T ss_pred cccceeeccCCCCCCCCCceEecCHHHHHHhhcccCCCcccceeeecCCCCcccccCchHhhhhhhhhccccccCceEEE
Confidence 334789999944 4999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCeEEEEEecCCCceeeEEEeCCC-CcEEEEEeCCC
Q 018235 110 KVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQN-PHICASWADTG 188 (359)
Q Consensus 110 ~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~-~~~lat~s~dg 188 (359)
+++||.+++... +.++.++.+|++++ ++|++..+.++|.|+|||++.++.+ ..++|++++.|
T Consensus 113 kl~nl~~t~~~~------------~gd~~~~~eddedD-----~~P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G 175 (440)
T KOG0302|consen 113 KLSNLHKTRNPN------------DGDGEDEEEDDEDD-----RKPQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENG 175 (440)
T ss_pred EeeeeecccCCc------------cCCCCCccccchhh-----ccccccccccccccccceeeecccCCcceeeeecccC
Confidence 999999998732 11111111122211 4899999999999999999999985 57899999999
Q ss_pred cEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceec
Q 018235 189 HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVD 268 (359)
Q Consensus 189 ~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~ 268 (359)
.|+||++..+++.+...+..... ...+|++++.+|..++|+|+|||...|.|+||+|-+.|++|.+.+ +.|.+.
T Consensus 176 ~V~Vw~l~~~l~~l~~~~~~~~~-----s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~-g~W~vd 249 (440)
T KOG0302|consen 176 RVQVWDLAPHLNALSEPGLEVKD-----SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPST-GSWKVD 249 (440)
T ss_pred cEEEEEchhhhhhhcCccccccc-----cccCceEEecccCccceeeecccccccccccCccccceEeeeecc-Cceeec
Confidence 99999999988888777665544 146899999999999999999999988999999999999999988 899999
Q ss_pred CccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCC-CCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceE
Q 018235 269 PNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG-KSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFL 347 (359)
Q Consensus 269 ~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~-~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~ 347 (359)
.++|.+|+.+|++++|||++.++|||||.||+|+|||+|.+ +++....++|.++||.|+||..-.+|+.+.. ++.
T Consensus 250 ~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~D----dGt 325 (440)
T KOG0302|consen 250 QRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGD----DGT 325 (440)
T ss_pred CccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCC----Cce
Confidence 99999999999999999999999999999999999999998 3455556999999999999999998887766 899
Q ss_pred EEEEeCcC
Q 018235 348 FMILDCSR 355 (359)
Q Consensus 348 i~iwd~~~ 355 (359)
++|||.+.
T Consensus 326 ~~iwDLR~ 333 (440)
T KOG0302|consen 326 LSIWDLRQ 333 (440)
T ss_pred EEEEEhhh
Confidence 99999875
No 2
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=100.00 E-value=2.7e-49 Score=353.72 Aligned_cols=285 Identities=27% Similarity=0.460 Sum_probs=232.8
Q ss_pred CCCCCCeeeeCCcccCCCCceeeeChhHhhhhhcccccCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEE
Q 018235 29 IPSLPTKVWQPGVDKLEEGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGV 108 (359)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~Y~~~~~~~~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i 108 (359)
..+++|++|+++++ +|||.+++|+|+|||||+||+||......+.|. .++|++||+|+++.+|+|+|
T Consensus 15 ~i~Eey~~WKkNtp------------~LYDlv~th~LeWPSLt~qWlPd~~~~~~~~~~-~~rliLGthTs~~~~n~L~i 81 (422)
T KOG0264|consen 15 QINEEYKIWKKNTP------------FLYDLVITHALEWPSLTVQWLPDVTKPEEKDFS-KQRLILGTHTSGSEQNYLVI 81 (422)
T ss_pred cccchhhHHhhcCc------------HHHHHhhhccccccceEEEEcCCcccccCCCce-eEEEEEEeecCCCCccEEEE
Confidence 46778999999999 999999999999999999999996554445555 59999999999999999999
Q ss_pred EEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCC--CCC-CeEEEEEecCCCceeeEEEeCCCCcEEEEEe
Q 018235 109 FKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGG--SGT-PILQLRKVAHQGCVNRIRAMTQNPHICASWA 185 (359)
Q Consensus 109 ~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~~~~~--~~~-~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s 185 (359)
.++ +|+...... ++ ...+.+.++.++ ... .+.+.+.+.|.|.||++|++|+.+.+|||++
T Consensus 82 A~v-~lp~~~~~~------------~~----~~~~~e~~e~~g~~~~~~~v~i~~~i~h~gEVnRaRymPQnp~iVAt~t 144 (422)
T KOG0264|consen 82 ASV-QLPTDDAQF------------ED----KHYDEERGEFGGFGAVSGKVEISQKINHDGEVNRARYMPQNPNIVATKT 144 (422)
T ss_pred Eee-cCCCccccc------------cc----ccccccccccCCccccccceEEEEeccCCccchhhhhCCCCCcEEEecC
Confidence 998 566554432 01 111222222221 112 3444678899999999999999999999999
Q ss_pred CCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCc-
Q 018235 186 DTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDAT- 264 (359)
Q Consensus 186 ~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~- 264 (359)
..+.|+|||..++.......+ ...|...+.||..++++|+|++...+.|++|+.|++|++||++..+.
T Consensus 145 ~~~dv~Vfd~tk~~s~~~~~~-----------~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~ 213 (422)
T KOG0264|consen 145 SSGDVYVFDYTKHPSKPKASG-----------ECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKE 213 (422)
T ss_pred CCCCEEEEEeccCCCcccccc-----------cCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccC
Confidence 999999999998654433221 25778899999999999999999999999999999999999987443
Q ss_pred --ceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCC-CCceEEeecCCCCEEEEEEcCCCCeEEEEeee
Q 018235 265 --WNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG-KSALTSFKAHNADVNVISWNRCWLAVCWHLEV 341 (359)
Q Consensus 265 --~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~-~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~ 341 (359)
.+.+...|.+|...|++++|+|.+..+|++++.|+.+.|||+|+. .++.....+|.++|+|++|||.+.+++.....
T Consensus 214 ~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~ 293 (422)
T KOG0264|consen 214 DKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSA 293 (422)
T ss_pred CccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccC
Confidence 244456788999999999999999999999999999999999962 35667779999999999999999888776654
Q ss_pred cccceEEEEEeCcCCc
Q 018235 342 MMEHFLFMILDCSRGE 357 (359)
Q Consensus 342 ~~~d~~i~iwd~~~g~ 357 (359)
|+.|++||.|...
T Consensus 294 ---D~tV~LwDlRnL~ 306 (422)
T KOG0264|consen 294 ---DKTVALWDLRNLN 306 (422)
T ss_pred ---CCcEEEeechhcc
Confidence 9999999998643
No 3
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.96 E-value=9.9e-29 Score=234.90 Aligned_cols=169 Identities=21% Similarity=0.357 Sum_probs=156.1
Q ss_pred EEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEE
Q 018235 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAID 236 (359)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 236 (359)
...++.+|.|+|..++|+|+. ++++++++|++|++|.+.+ ...+..++||..+|+.++
T Consensus 443 ~~~~L~GH~GPVyg~sFsPd~-rfLlScSED~svRLWsl~t---------------------~s~~V~y~GH~~PVwdV~ 500 (707)
T KOG0263|consen 443 TSRTLYGHSGPVYGCSFSPDR-RFLLSCSEDSSVRLWSLDT---------------------WSCLVIYKGHLAPVWDVQ 500 (707)
T ss_pred eeEEeecCCCceeeeeecccc-cceeeccCCcceeeeeccc---------------------ceeEEEecCCCcceeeEE
Confidence 335689999999999999999 8999999999999999998 567788999999999999
Q ss_pred eCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe
Q 018235 237 WNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF 316 (359)
Q Consensus 237 ~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~ 316 (359)
|+|.|- +||||+.|++.++|.... ..+. +.|.+|-+.|.|++|||+.. ++|+||.|++||+||+.++ ..++.+
T Consensus 501 F~P~Gy-YFatas~D~tArLWs~d~-~~Pl---RifaghlsDV~cv~FHPNs~-Y~aTGSsD~tVRlWDv~~G-~~VRiF 573 (707)
T KOG0263|consen 501 FAPRGY-YFATASHDQTARLWSTDH-NKPL---RIFAGHLSDVDCVSFHPNSN-YVATGSSDRTVRLWDVSTG-NSVRIF 573 (707)
T ss_pred ecCCce-EEEecCCCceeeeeeccc-CCch---hhhcccccccceEEECCccc-ccccCCCCceEEEEEcCCC-cEEEEe
Confidence 999998 999999999999999876 4443 88999999999999999998 9999999999999999998 788889
Q ss_pred ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 317 KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 317 ~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
.+|.++|.+++|+|+|.+|+.+.. ++.|++||...|..
T Consensus 574 ~GH~~~V~al~~Sp~Gr~LaSg~e----d~~I~iWDl~~~~~ 611 (707)
T KOG0263|consen 574 TGHKGPVTALAFSPCGRYLASGDE----DGLIKIWDLANGSL 611 (707)
T ss_pred cCCCCceEEEEEcCCCceEeeccc----CCcEEEEEcCCCcc
Confidence 999999999999999999998876 99999999998763
No 4
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.96 E-value=2.1e-28 Score=232.70 Aligned_cols=202 Identities=20% Similarity=0.314 Sum_probs=178.9
Q ss_pred cccCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCC
Q 018235 64 HIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDED 143 (359)
Q Consensus 64 ~~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d 143 (359)
...-|..++.+.|+. .+||.++ ++..+.+|.+.
T Consensus 449 GH~GPVyg~sFsPd~-----------rfLlScS-----ED~svRLWsl~------------------------------- 481 (707)
T KOG0263|consen 449 GHSGPVYGCSFSPDR-----------RFLLSCS-----EDSSVRLWSLD------------------------------- 481 (707)
T ss_pred cCCCceeeeeecccc-----------cceeecc-----CCcceeeeecc-------------------------------
Confidence 345688888888874 4666655 56789999882
Q ss_pred CCcccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcE
Q 018235 144 SDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLV 223 (359)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (359)
.........+|..+|+.++|+|.| .+|||++.|++.++|.... ..|++
T Consensus 482 ----------t~s~~V~y~GH~~PVwdV~F~P~G-yYFatas~D~tArLWs~d~---------------------~~PlR 529 (707)
T KOG0263|consen 482 ----------TWSCLVIYKGHLAPVWDVQFAPRG-YYFATASHDQTARLWSTDH---------------------NKPLR 529 (707)
T ss_pred ----------cceeEEEecCCCcceeeEEecCCc-eEEEecCCCceeeeeeccc---------------------CCchh
Confidence 334445666999999999999999 9999999999999999987 78999
Q ss_pred EecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEE
Q 018235 224 KFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAI 303 (359)
Q Consensus 224 ~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~i 303 (359)
+|.||.+.+-|+.|+|+.. ++++||.|.++++||+.+ +..+ +.|.||+++|.+|+|||.|. .||+|+.||.|.|
T Consensus 530 ifaghlsDV~cv~FHPNs~-Y~aTGSsD~tVRlWDv~~-G~~V---RiF~GH~~~V~al~~Sp~Gr-~LaSg~ed~~I~i 603 (707)
T KOG0263|consen 530 IFAGHLSDVDCVSFHPNSN-YVATGSSDRTVRLWDVST-GNSV---RIFTGHKGPVTALAFSPCGR-YLASGDEDGLIKI 603 (707)
T ss_pred hhcccccccceEEECCccc-ccccCCCCceEEEEEcCC-CcEE---EEecCCCCceEEEEEcCCCc-eEeecccCCcEEE
Confidence 9999999999999999998 999999999999999988 4444 78999999999999999999 9999999999999
Q ss_pred EECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 304 WDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 304 wD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
||+.++ ..+..+.+|.+.|++|+|+++|..|+.+.. |+.|++||...
T Consensus 604 WDl~~~-~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~----DnsV~lWD~~~ 650 (707)
T KOG0263|consen 604 WDLANG-SLVKQLKGHTGTIYSLSFSRDGNVLASGGA----DNSVRLWDLTK 650 (707)
T ss_pred EEcCCC-cchhhhhcccCceeEEEEecCCCEEEecCC----CCeEEEEEchh
Confidence 999998 788888999999999999999999998877 99999999753
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.9e-28 Score=218.03 Aligned_cols=168 Identities=18% Similarity=0.252 Sum_probs=154.5
Q ss_pred eEEEEEecCCCceeeEEEeCC-CCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEE
Q 018235 156 ILQLRKVAHQGCVNRIRAMTQ-NPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYA 234 (359)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~-~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 234 (359)
.+..++.+|.+.|.++.|+|. ...-+|||+.||+|++|++.. ..++..+.+|...|..
T Consensus 208 ~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~---------------------e~~l~~l~gH~~RVs~ 266 (459)
T KOG0272|consen 208 NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ---------------------ETPLQDLEGHLARVSR 266 (459)
T ss_pred ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC---------------------Ccchhhhhcchhhhee
Confidence 456889999999999999998 357899999999999999987 5788999999999999
Q ss_pred EEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceE
Q 018235 235 IDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALT 314 (359)
Q Consensus 235 l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~ 314 (359)
++|+|.|. +|+|++.|.+-++||+++.... .-..||...|.+++|+|+|. +++||+.|..-||||+|++ .++.
T Consensus 267 VafHPsG~-~L~TasfD~tWRlWD~~tk~El----L~QEGHs~~v~~iaf~~DGS-L~~tGGlD~~~RvWDlRtg-r~im 339 (459)
T KOG0272|consen 267 VAFHPSGK-FLGTASFDSTWRLWDLETKSEL----LLQEGHSKGVFSIAFQPDGS-LAATGGLDSLGRVWDLRTG-RCIM 339 (459)
T ss_pred eeecCCCc-eeeecccccchhhcccccchhh----HhhcccccccceeEecCCCc-eeeccCccchhheeecccC-cEEE
Confidence 99999999 9999999999999999984443 34679999999999999999 9999999999999999999 8888
Q ss_pred EeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 315 SFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 315 ~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
.+.+|...|..|+|+|+|..++++.. |++++|||.+.
T Consensus 340 ~L~gH~k~I~~V~fsPNGy~lATgs~----Dnt~kVWDLR~ 376 (459)
T KOG0272|consen 340 FLAGHIKEILSVAFSPNGYHLATGSS----DNTCKVWDLRM 376 (459)
T ss_pred EecccccceeeEeECCCceEEeecCC----CCcEEEeeecc
Confidence 99999999999999999999888776 99999999875
No 6
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.1e-28 Score=214.26 Aligned_cols=167 Identities=23% Similarity=0.481 Sum_probs=148.4
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
..+.+|.++|-+++|+|.+ ..+|||+.|.+|++||+.+ ..|.++.++|...|.+++|+
T Consensus 109 sS~~GH~e~Vl~~~fsp~g-~~l~tGsGD~TvR~WD~~T---------------------eTp~~t~KgH~~WVlcvaws 166 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSPTG-SRLVTGSGDTTVRLWDLDT---------------------ETPLFTCKGHKNWVLCVAWS 166 (480)
T ss_pred cccCCCCCcEEEEEecCCC-ceEEecCCCceEEeeccCC---------------------CCcceeecCCccEEEEEEEC
Confidence 4567899999999999988 8999999999999999998 68899999999999999999
Q ss_pred CCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCC----CCEEEEEeCCCcEEEEECCCCCCceE
Q 018235 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTE----PDVFASCSVDGHIAIWDTRVGKSALT 314 (359)
Q Consensus 239 p~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~----~~~las~s~Dg~I~iwD~r~~~~~~~ 314 (359)
|++. .||||+.||+|++||+.+++... +++.+|+..|++++|.|-+ ..+||++|.||+|+|||+..+ .++.
T Consensus 167 PDgk-~iASG~~dg~I~lwdpktg~~~g---~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~-~~~~ 241 (480)
T KOG0271|consen 167 PDGK-KIASGSKDGSIRLWDPKTGQQIG---RALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG-TCVR 241 (480)
T ss_pred CCcc-hhhccccCCeEEEecCCCCCccc---ccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCc-eEEE
Confidence 9999 99999999999999999865544 8899999999999998753 228999999999999999987 7888
Q ss_pred EeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 315 SFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 315 ~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
.+.+|..+|+|+.|--+| ++++.. .|++|++|+...|.
T Consensus 242 ~lsgHT~~VTCvrwGG~g--liySgS---~DrtIkvw~a~dG~ 279 (480)
T KOG0271|consen 242 TLSGHTASVTCVRWGGEG--LIYSGS---QDRTIKVWRALDGK 279 (480)
T ss_pred EeccCccceEEEEEcCCc--eEEecC---CCceEEEEEccchh
Confidence 999999999999998544 444443 39999999988764
No 7
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=4.9e-27 Score=196.79 Aligned_cols=216 Identities=21% Similarity=0.347 Sum_probs=179.0
Q ss_pred CcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 018235 67 WPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDD 146 (359)
Q Consensus 67 wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~ 146 (359)
.--.++|+.|-. +.+..++++++-.-...+.|.|+++..
T Consensus 9 f~GysvqfSPf~--------~nrLavAt~q~yGl~G~G~L~ile~~~--------------------------------- 47 (311)
T KOG0277|consen 9 FHGYSVQFSPFV--------ENRLAVATAQHYGLAGNGRLFILEVTD--------------------------------- 47 (311)
T ss_pred cccceeEecccc--------cchhheeehhhcccccCceEEEEecCC---------------------------------
Confidence 334567776642 223445555555545677899998730
Q ss_pred ccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEec
Q 018235 147 DEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG 226 (359)
Q Consensus 147 ~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (359)
...+.+.+...-...+..++|++...+++++++.||.++|||+.. +..|+..|+
T Consensus 48 ------~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~--------------------~s~Pi~~~k 101 (311)
T KOG0277|consen 48 ------PKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTM--------------------PSKPIHKFK 101 (311)
T ss_pred ------CCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCC--------------------CCcchhHHH
Confidence 155666788888999999999999889999999999999999776 478999999
Q ss_pred CCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEEC
Q 018235 227 GHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDT 306 (359)
Q Consensus 227 ~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~ 306 (359)
.|..+|++++|++..+..++++|-|++|+||+...+.. + ++|.+|..-|+..+|||..+++|+++|.|++++|||+
T Consensus 102 EH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S-v---~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdv 177 (311)
T KOG0277|consen 102 EHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS-V---QTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDV 177 (311)
T ss_pred hhhhheEEeccccccceeEEeeccCCceEeecCCCCcc-e---EeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEe
Confidence 99999999999999887899999999999999977433 3 6899999999999999999999999999999999999
Q ss_pred CCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 307 RVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 307 r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
|...+.+ .+.+|...|.|+.|+..+..++.+... |+.|++||++.-.
T Consensus 178 r~~gk~~-~i~ah~~Eil~cdw~ky~~~vl~Tg~v---d~~vr~wDir~~r 224 (311)
T KOG0277|consen 178 RSPGKFM-SIEAHNSEILCCDWSKYNHNVLATGGV---DNLVRGWDIRNLR 224 (311)
T ss_pred cCCCcee-EEEeccceeEeecccccCCcEEEecCC---CceEEEEehhhcc
Confidence 9984444 489999999999999988877766554 9999999998644
No 8
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1.2e-27 Score=212.81 Aligned_cols=166 Identities=19% Similarity=0.245 Sum_probs=148.9
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
..+.+|...|.+++|+|.| .+++|++.|.+-++||+.+ ...+....||..+|++++|+
T Consensus 255 ~~l~gH~~RVs~VafHPsG-~~L~TasfD~tWRlWD~~t---------------------k~ElL~QEGHs~~v~~iaf~ 312 (459)
T KOG0272|consen 255 QDLEGHLARVSRVAFHPSG-KFLGTASFDSTWRLWDLET---------------------KSELLLQEGHSKGVFSIAFQ 312 (459)
T ss_pred hhhhcchhhheeeeecCCC-ceeeecccccchhhccccc---------------------chhhHhhcccccccceeEec
Confidence 5667999999999999999 8999999999999999998 45566788999999999999
Q ss_pred CCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeec
Q 018235 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA 318 (359)
Q Consensus 239 p~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~ 318 (359)
++|. +++||+.|..-+|||+|++ ..+ ..+.+|...|.+|.|+|+|- .+||||.|++++|||+|.. ..+.++.+
T Consensus 313 ~DGS-L~~tGGlD~~~RvWDlRtg-r~i---m~L~gH~k~I~~V~fsPNGy-~lATgs~Dnt~kVWDLR~r-~~ly~ipA 385 (459)
T KOG0272|consen 313 PDGS-LAATGGLDSLGRVWDLRTG-RCI---MFLAGHIKEILSVAFSPNGY-HLATGSSDNTCKVWDLRMR-SELYTIPA 385 (459)
T ss_pred CCCc-eeeccCccchhheeecccC-cEE---EEecccccceeeEeECCCce-EEeecCCCCcEEEeeeccc-ccceeccc
Confidence 9999 9999999999999999995 444 46889999999999999998 9999999999999999997 77889999
Q ss_pred CCCCEEEEEEcC-CCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 319 HNADVNVISWNR-CWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 319 h~~~V~~i~~s~-~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
|..-|+.++|+| .|.+|+.... |++++||...+..
T Consensus 386 H~nlVS~Vk~~p~~g~fL~Tasy----D~t~kiWs~~~~~ 421 (459)
T KOG0272|consen 386 HSNLVSQVKYSPQEGYFLVTASY----DNTVKIWSTRTWS 421 (459)
T ss_pred ccchhhheEecccCCeEEEEccc----CcceeeecCCCcc
Confidence 999999999999 5566665544 9999999877654
No 9
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.95 E-value=1.7e-25 Score=190.91 Aligned_cols=229 Identities=18% Similarity=0.352 Sum_probs=185.2
Q ss_pred CCCceeeeChhHhhhhhcccccCc-ceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCC
Q 018235 45 EEGEELQCDPTAYNSLHAFHIGWP-CLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVP 123 (359)
Q Consensus 45 ~~~~~l~~~~~~Y~~~~~~~~~wP-~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~ 123 (359)
.+|--++.|.+.-+-.|.+.|+-- .+++-+-|.+ .++.+|- -+|.-.|+.++.-
T Consensus 75 qDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg-----------~~VAcGG-----LdN~Csiy~ls~~--------- 129 (343)
T KOG0286|consen 75 QDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSG-----------NFVACGG-----LDNKCSIYPLSTR--------- 129 (343)
T ss_pred cCCeEEEEEcccccceeEEecCceeEEEEEECCCC-----------CeEEecC-----cCceeEEEecccc---------
Confidence 467778887777777766655422 3577777764 5666665 5888999988510
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccc
Q 018235 124 NKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALA 203 (359)
Q Consensus 124 ~~~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~ 203 (359)
+. + ........+.+|.+-+.+++|.+++ .|+|++.|.+..+||+.+
T Consensus 130 --------------------d~---~---g~~~v~r~l~gHtgylScC~f~dD~--~ilT~SGD~TCalWDie~------ 175 (343)
T KOG0286|consen 130 --------------------DA---E---GNVRVSRELAGHTGYLSCCRFLDDN--HILTGSGDMTCALWDIET------ 175 (343)
T ss_pred --------------------cc---c---ccceeeeeecCccceeEEEEEcCCC--ceEecCCCceEEEEEccc------
Confidence 00 0 1333446778999999999999965 688999999999999998
Q ss_pred cccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEE
Q 018235 204 ESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQ 283 (359)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~ 283 (359)
++.+..|.||.+.|.+|+++|.....++||++|+..+|||+|. +... +.|.+|.+.|+.|+
T Consensus 176 ---------------g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~-~~c~---qtF~ghesDINsv~ 236 (343)
T KOG0286|consen 176 ---------------GQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS-GQCV---QTFEGHESDINSVR 236 (343)
T ss_pred ---------------ceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccC-ccee---EeecccccccceEE
Confidence 7788999999999999999994334999999999999999998 4544 78999999999999
Q ss_pred ecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe--ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 284 WSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF--KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 284 ~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~--~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
|.|+|. -|++||.|+++|+||+|.. +.+..+ ..-..+|++++|+..|++|..+.. |..+.+||.-.++
T Consensus 237 ffP~G~-afatGSDD~tcRlyDlRaD-~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~----d~~c~vWDtlk~e 306 (343)
T KOG0286|consen 237 FFPSGD-AFATGSDDATCRLYDLRAD-QELAVYSHDSIICGITSVAFSKSGRLLFAGYD----DFTCNVWDTLKGE 306 (343)
T ss_pred EccCCC-eeeecCCCceeEEEeecCC-cEEeeeccCcccCCceeEEEcccccEEEeeec----CCceeEeeccccc
Confidence 999999 9999999999999999997 555444 334568999999999999998876 8899999987665
No 10
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.94 E-value=1.5e-25 Score=202.06 Aligned_cols=166 Identities=23% Similarity=0.446 Sum_probs=146.0
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceE
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (359)
.|+. ++++|.++|++++|+|.+ .+|+|+++|++++||.... ......|.+|..+|+
T Consensus 350 ~P~~--t~~GH~g~V~alk~n~tg-~LLaS~SdD~TlkiWs~~~---------------------~~~~~~l~~Hskei~ 405 (524)
T KOG0273|consen 350 RPVK--TFIGHHGEVNALKWNPTG-SLLASCSDDGTLKIWSMGQ---------------------SNSVHDLQAHSKEIY 405 (524)
T ss_pred Ccce--eeecccCceEEEEECCCC-ceEEEecCCCeeEeeecCC---------------------Ccchhhhhhhcccee
Confidence 5554 566899999999999999 8999999999999999876 567788999999999
Q ss_pred EEEeCCCCCC--------eEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEE
Q 018235 234 AIDWNPITTG--------RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWD 305 (359)
Q Consensus 234 ~l~~sp~~~~--------~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD 305 (359)
.+.|+|.+++ .|++++.|++|++||+.. +.++ ..|..|+.+|++|+|+|++. ++|+|+.||.|+||+
T Consensus 406 t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~-gv~i---~~f~kH~~pVysvafS~~g~-ylAsGs~dg~V~iws 480 (524)
T KOG0273|consen 406 TIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES-GVPI---HTLMKHQEPVYSVAFSPNGR-YLASGSLDGCVHIWS 480 (524)
T ss_pred eEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC-Ccee---EeeccCCCceEEEEecCCCc-EEEecCCCCeeEecc
Confidence 9999998764 799999999999999987 5554 78999999999999999999 999999999999999
Q ss_pred CCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 306 TRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 306 ~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
++++ +.++.+. -+..|+.++||..|..|+.... ++.+++.|.+
T Consensus 481 ~~~~-~l~~s~~-~~~~Ifel~Wn~~G~kl~~~~s----d~~vcvldlr 523 (524)
T KOG0273|consen 481 TKTG-KLVKSYQ-GTGGIFELCWNAAGDKLGACAS----DGSVCVLDLR 523 (524)
T ss_pred ccch-heeEeec-CCCeEEEEEEcCCCCEEEEEec----CCCceEEEec
Confidence 9997 6666665 4556999999999988887766 7888888765
No 11
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.94 E-value=2.1e-25 Score=201.09 Aligned_cols=194 Identities=19% Similarity=0.297 Sum_probs=158.6
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCcc--cccccccc---c---------cCCCCC----
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLN--ALAESETI---V---------GQGAPQ---- 215 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~--~~~~~~~~---~---------~~~~~~---- 215 (359)
...+...+-.|+++|.+++|+..| ++|++++.||++.+||..+... .+...... + ....+.
T Consensus 265 ~G~l~~tl~~HkgPI~slKWnk~G-~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V 343 (524)
T KOG0273|consen 265 DGNLISTLGQHKGPIFSLKWNKKG-TYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHV 343 (524)
T ss_pred CchhhhhhhccCCceEEEEEcCCC-CEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEE
Confidence 334556677899999999999999 8999999999999999855221 11111110 0 001110
Q ss_pred --CCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCC-----
Q 018235 216 --VSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTE----- 288 (359)
Q Consensus 216 --~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~----- 288 (359)
+....|+.+|.||..+|.+|.|+|.+. +|+|++.|++++||...... .. ..+.+|...|+.+.|+|.+
T Consensus 344 ~kv~~~~P~~t~~GH~g~V~alk~n~tg~-LLaS~SdD~TlkiWs~~~~~-~~---~~l~~Hskei~t~~wsp~g~v~~n 418 (524)
T KOG0273|consen 344 CKVGEDRPVKTFIGHHGEVNALKWNPTGS-LLASCSDDGTLKIWSMGQSN-SV---HDLQAHSKEIYTIKWSPTGPVTSN 418 (524)
T ss_pred EEecCCCcceeeecccCceEEEEECCCCc-eEEEecCCCeeEeeecCCCc-ch---hhhhhhccceeeEeecCCCCccCC
Confidence 134689999999999999999999998 99999999999999987633 32 6789999999999999875
Q ss_pred ---CCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 289 ---PDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 289 ---~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
...+++++.|++|++||+..+ .+++.+..|..+|.+++|+|+|++++.+.. ++.|.+|.+.++.+
T Consensus 419 ~~~~~~l~sas~dstV~lwdv~~g-v~i~~f~kH~~pVysvafS~~g~ylAsGs~----dg~V~iws~~~~~l 486 (524)
T KOG0273|consen 419 PNMNLMLASASFDSTVKLWDVESG-VPIHTLMKHQEPVYSVAFSPNGRYLASGSL----DGCVHIWSTKTGKL 486 (524)
T ss_pred CcCCceEEEeecCCeEEEEEccCC-ceeEeeccCCCceEEEEecCCCcEEEecCC----CCeeEeccccchhe
Confidence 347999999999999999998 899999999999999999999999999877 99999999998864
No 12
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.94 E-value=1.3e-26 Score=205.61 Aligned_cols=202 Identities=17% Similarity=0.277 Sum_probs=172.8
Q ss_pred ccccCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCC
Q 018235 63 FHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDE 142 (359)
Q Consensus 63 ~~~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 142 (359)
..+.-|.-.+.|.|++ .+|++||++. ...+|...
T Consensus 93 NKvkc~V~~v~WtPeG-----------RRLltgs~SG-----EFtLWNg~------------------------------ 126 (464)
T KOG0284|consen 93 NKVKCPVNVVRWTPEG-----------RRLLTGSQSG-----EFTLWNGT------------------------------ 126 (464)
T ss_pred cccccceeeEEEcCCC-----------ceeEeecccc-----cEEEecCc------------------------------
Confidence 4566777788999986 5899999765 56677552
Q ss_pred CCCcccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCc
Q 018235 143 DSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPL 222 (359)
Q Consensus 143 d~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (359)
.-..+..++.|..+|.++.|++++ ..++||..+|.|++|+... ..+
T Consensus 127 -----------~fnFEtilQaHDs~Vr~m~ws~~g-~wmiSgD~gG~iKyWqpnm----------------------nnV 172 (464)
T KOG0284|consen 127 -----------SFNFETILQAHDSPVRTMKWSHNG-TWMISGDKGGMIKYWQPNM----------------------NNV 172 (464)
T ss_pred -----------eeeHHHHhhhhcccceeEEEccCC-CEEEEcCCCceEEecccch----------------------hhh
Confidence 112335567899999999999999 8999999999999999876 345
Q ss_pred EEecCCC-CceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcE
Q 018235 223 VKFGGHK-DEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHI 301 (359)
Q Consensus 223 ~~~~~h~-~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I 301 (359)
..+.+|. ..|.+++|||... .|+||+.||+|+|||.+.... . +.+.||.-.|.+++|+|.-. ++|++|.|..|
T Consensus 173 k~~~ahh~eaIRdlafSpnDs-kF~t~SdDg~ikiWdf~~~ke-e---~vL~GHgwdVksvdWHP~kg-LiasgskDnlV 246 (464)
T KOG0284|consen 173 KIIQAHHAEAIRDLAFSPNDS-KFLTCSDDGTIKIWDFRMPKE-E---RVLRGHGWDVKSVDWHPTKG-LIASGSKDNLV 246 (464)
T ss_pred HHhhHhhhhhhheeccCCCCc-eeEEecCCCeEEEEeccCCch-h---heeccCCCCcceeccCCccc-eeEEccCCcee
Confidence 5566665 7999999999887 999999999999999987322 2 56799999999999999988 99999999999
Q ss_pred EEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 302 AIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 302 ~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
++||.|++ .++.++..|...|..+.|++++.+|+...+ |..++++|+++
T Consensus 247 KlWDprSg-~cl~tlh~HKntVl~~~f~~n~N~Llt~sk----D~~~kv~DiR~ 295 (464)
T KOG0284|consen 247 KLWDPRSG-SCLATLHGHKNTVLAVKFNPNGNWLLTGSK----DQSCKVFDIRT 295 (464)
T ss_pred EeecCCCc-chhhhhhhccceEEEEEEcCCCCeeEEccC----CceEEEEehhH
Confidence 99999999 899999999999999999999999998876 99999999984
No 13
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.8e-25 Score=196.91 Aligned_cols=173 Identities=21% Similarity=0.318 Sum_probs=153.5
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceE
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (359)
.......+.+|+.+|+|++|--++ ++++++.|++|++|+... +.....++||...|+
T Consensus 236 ~~~~~~~lsgHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~d---------------------G~~~r~lkGHahwvN 292 (480)
T KOG0271|consen 236 LGTCVRTLSGHTASVTCVRWGGEG--LIYSGSQDRTIKVWRALD---------------------GKLCRELKGHAHWVN 292 (480)
T ss_pred CceEEEEeccCccceEEEEEcCCc--eEEecCCCceEEEEEccc---------------------hhHHHhhcccchhee
Confidence 556778889999999999997766 999999999999999887 678889999999999
Q ss_pred EEEeC-----------CCCC------------------------CeEEEEcCCCcEEEEecCCCCcceecCccccCCCCC
Q 018235 234 AIDWN-----------PITT------------------------GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSAS 278 (359)
Q Consensus 234 ~l~~s-----------p~~~------------------------~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~ 278 (359)
.|+.| |.+. .+|+||+.|.++.+|+.....+++ ..+.+|..-
T Consensus 293 ~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi---~rmtgHq~l 369 (480)
T KOG0271|consen 293 HLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPI---TRMTGHQAL 369 (480)
T ss_pred eeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccch---hhhhchhhh
Confidence 99887 2222 169999999999999997755554 678999999
Q ss_pred eEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 279 VEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 279 V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
|+.+.|||++. ++|++|.|++|++||.+++ +-+.++.+|-+.|..++|+.+.++|+.+.. |.++++|++++.++
T Consensus 370 Vn~V~fSPd~r-~IASaSFDkSVkLW~g~tG-k~lasfRGHv~~VYqvawsaDsRLlVS~Sk----DsTLKvw~V~tkKl 443 (480)
T KOG0271|consen 370 VNHVSFSPDGR-YIASASFDKSVKLWDGRTG-KFLASFRGHVAAVYQVAWSADSRLLVSGSK----DSTLKVWDVRTKKL 443 (480)
T ss_pred eeeEEECCCcc-EEEEeecccceeeeeCCCc-chhhhhhhccceeEEEEeccCccEEEEcCC----CceEEEEEeeeeee
Confidence 99999999999 9999999999999999999 788899999999999999999999988766 99999999987654
No 14
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=4e-25 Score=198.70 Aligned_cols=171 Identities=23% Similarity=0.362 Sum_probs=150.9
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
..+.+|...|+.++|++....+|+++++|+.+.|||++.. ..++.....+|.+++++++|+
T Consensus 221 ~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~-------------------~~~~~~~~~ah~~~vn~~~fn 281 (422)
T KOG0264|consen 221 TIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN-------------------TSKPSHSVKAHSAEVNCVAFN 281 (422)
T ss_pred EEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC-------------------CCCCcccccccCCceeEEEeC
Confidence 4556899999999999999899999999999999999961 156777888999999999999
Q ss_pred CCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCC-------
Q 018235 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS------- 311 (359)
Q Consensus 239 p~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~------- 311 (359)
|.+..+|||||.|++|+|||+|+...+ ...+.+|...|..|.|||...++|||++.|+.+.|||+..-..
T Consensus 282 p~~~~ilAT~S~D~tV~LwDlRnL~~~---lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda 358 (422)
T KOG0264|consen 282 PFNEFILATGSADKTVALWDLRNLNKP---LHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDA 358 (422)
T ss_pred CCCCceEEeccCCCcEEEeechhcccC---ceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhh
Confidence 999989999999999999999986554 3789999999999999999999999999999999999975411
Q ss_pred ------ceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 312 ------ALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 312 ------~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
.++...+|.+.|+.++|+|+..+++.+... |+.+.||++.
T Consensus 359 ~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Svae---DN~LqIW~~s 404 (422)
T KOG0264|consen 359 EDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAE---DNILQIWQMA 404 (422)
T ss_pred ccCCcceeEEecCcccccccccCCCCCCeEEEEecC---CceEEEeecc
Confidence 234447999999999999999999888774 9999999986
No 15
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.93 E-value=1.3e-24 Score=184.49 Aligned_cols=173 Identities=20% Similarity=0.289 Sum_probs=149.7
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceE
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (359)
-......+.+|...|+.+..++++ +++.+++.|+.+++||+.. +++...|.||...|.
T Consensus 52 ~G~~~r~~~GHsH~v~dv~~s~dg-~~alS~swD~~lrlWDl~~---------------------g~~t~~f~GH~~dVl 109 (315)
T KOG0279|consen 52 YGVPVRRLTGHSHFVSDVVLSSDG-NFALSASWDGTLRLWDLAT---------------------GESTRRFVGHTKDVL 109 (315)
T ss_pred cCceeeeeeccceEecceEEccCC-ceEEeccccceEEEEEecC---------------------CcEEEEEEecCCceE
Confidence 455667888999999999999999 8999999999999999998 688899999999999
Q ss_pred EEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCC-CCEEEEEeCCCcEEEEECCCCCCc
Q 018235 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTE-PDVFASCSVDGHIAIWDTRVGKSA 312 (359)
Q Consensus 234 ~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~-~~~las~s~Dg~I~iwD~r~~~~~ 312 (359)
+++++++.+ +++||+.|.+|++|++....... ..-..|..-|.++.|+|+. ..+|+++|.|++|++||+++. +.
T Consensus 110 sva~s~dn~-qivSGSrDkTiklwnt~g~ck~t---~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~-~l 184 (315)
T KOG0279|consen 110 SVAFSTDNR-QIVSGSRDKTIKLWNTLGVCKYT---IHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNC-QL 184 (315)
T ss_pred EEEecCCCc-eeecCCCcceeeeeeecccEEEE---EecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCc-ch
Confidence 999999998 99999999999999986522211 1112237889999999994 339999999999999999997 66
Q ss_pred eEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 313 LTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 313 ~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
...+.+|+.-++.+.++|+|.+.+.+.. ++.+.+||.+.++
T Consensus 185 ~~~~~gh~~~v~t~~vSpDGslcasGgk----dg~~~LwdL~~~k 225 (315)
T KOG0279|consen 185 RTTFIGHSGYVNTVTVSPDGSLCASGGK----DGEAMLWDLNEGK 225 (315)
T ss_pred hhccccccccEEEEEECCCCCEEecCCC----CceEEEEEccCCc
Confidence 7778999999999999999998877544 8999999998765
No 16
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.93 E-value=6.4e-24 Score=180.33 Aligned_cols=169 Identities=20% Similarity=0.271 Sum_probs=144.8
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCC--CCc
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGH--KDE 231 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~ 231 (359)
......++.+|...|.+++|++++ ..++||+.|.+|.+|+.-. .+..+...+ +..
T Consensus 94 ~g~~t~~f~GH~~dVlsva~s~dn-~qivSGSrDkTiklwnt~g----------------------~ck~t~~~~~~~~W 150 (315)
T KOG0279|consen 94 TGESTRRFVGHTKDVLSVAFSTDN-RQIVSGSRDKTIKLWNTLG----------------------VCKYTIHEDSHREW 150 (315)
T ss_pred CCcEEEEEEecCCceEEEEecCCC-ceeecCCCcceeeeeeecc----------------------cEEEEEecCCCcCc
Confidence 335567889999999999999999 8999999999999999876 444555444 678
Q ss_pred eEEEEeCCC--CCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCC
Q 018235 232 GYAIDWNPI--TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG 309 (359)
Q Consensus 232 v~~l~~sp~--~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~ 309 (359)
|.++.|+|. .+ +|++++.|+++++||+++ -+.. ..+.||++.|+.+.+||+|. +.++|+.||.+.+||++.+
T Consensus 151 VscvrfsP~~~~p-~Ivs~s~DktvKvWnl~~-~~l~---~~~~gh~~~v~t~~vSpDGs-lcasGgkdg~~~LwdL~~~ 224 (315)
T KOG0279|consen 151 VSCVRFSPNESNP-IIVSASWDKTVKVWNLRN-CQLR---TTFIGHSGYVNTVTVSPDGS-LCASGGKDGEAMLWDLNEG 224 (315)
T ss_pred EEEEEEcCCCCCc-EEEEccCCceEEEEccCC-cchh---hccccccccEEEEEECCCCC-EEecCCCCceEEEEEccCC
Confidence 999999999 45 999999999999999987 3433 67899999999999999999 9999999999999999998
Q ss_pred CCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 310 KSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 310 ~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
+.+..+ .|...|++++|+|+...|+... +..|+||+..++.+
T Consensus 225 -k~lysl-~a~~~v~sl~fspnrywL~~at-----~~sIkIwdl~~~~~ 266 (315)
T KOG0279|consen 225 -KNLYSL-EAFDIVNSLCFSPNRYWLCAAT-----ATSIKIWDLESKAV 266 (315)
T ss_pred -ceeEec-cCCCeEeeEEecCCceeEeecc-----CCceEEEeccchhh
Confidence 566555 5888999999999998888775 45699999887654
No 17
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=6.2e-25 Score=184.22 Aligned_cols=170 Identities=18% Similarity=0.300 Sum_probs=153.9
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
..+..|..+|.++.|++.....+++++-||+|++|+... .+.+.+|.||..-|+...||
T Consensus 98 ~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r---------------------~~Sv~Tf~gh~~~Iy~a~~s 156 (311)
T KOG0277|consen 98 HKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR---------------------PNSVQTFNGHNSCIYQAAFS 156 (311)
T ss_pred hHHHhhhhheEEeccccccceeEEeeccCCceEeecCCC---------------------CcceEeecCCccEEEEEecC
Confidence 455689999999999998878888889999999999987 57789999999999999999
Q ss_pred CCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeec
Q 018235 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA 318 (359)
Q Consensus 239 p~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~ 318 (359)
|..+++++++|.|+++++||++..++.. .+..|...+.++.|+....++++||+.|+.||+||+|+.+.++..+.+
T Consensus 157 p~~~nlfas~Sgd~~l~lwdvr~~gk~~----~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~g 232 (311)
T KOG0277|consen 157 PHIPNLFASASGDGTLRLWDVRSPGKFM----SIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNG 232 (311)
T ss_pred CCCCCeEEEccCCceEEEEEecCCCcee----EEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecC
Confidence 9999999999999999999999987765 378899999999999999999999999999999999998789999999
Q ss_pred CCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 319 HNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 319 h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
|.-.|..|.|+|...-++.+.. .|.+++||+...+
T Consensus 233 h~~AVRkvk~Sph~~~lLaSas---YDmT~riw~~~~~ 267 (311)
T KOG0277|consen 233 HGLAVRKVKFSPHHASLLASAS---YDMTVRIWDPERQ 267 (311)
T ss_pred CceEEEEEecCcchhhHhhhcc---ccceEEecccccc
Confidence 9999999999999877766554 4999999998754
No 18
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.93 E-value=4.9e-25 Score=192.70 Aligned_cols=168 Identities=18% Similarity=0.238 Sum_probs=154.9
Q ss_pred EEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEE
Q 018235 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAID 236 (359)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 236 (359)
+...+.+|.|.|.++++.|-+ .+||||+.|+++.|||+.+ ++...++.||...+.+++
T Consensus 143 l~rVi~gHlgWVr~vavdP~n-~wf~tgs~DrtikIwDlat---------------------g~LkltltGhi~~vr~va 200 (460)
T KOG0285|consen 143 LYRVISGHLGWVRSVAVDPGN-EWFATGSADRTIKIWDLAT---------------------GQLKLTLTGHIETVRGVA 200 (460)
T ss_pred ehhhhhhccceEEEEeeCCCc-eeEEecCCCceeEEEEccc---------------------CeEEEeecchhheeeeee
Confidence 445567899999999999987 8999999999999999998 677889999999999999
Q ss_pred eCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe
Q 018235 237 WNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF 316 (359)
Q Consensus 237 ~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~ 316 (359)
+|+..+ +|++++.|+.|+.||+.. .+.+ +.+.||-+.|.+++.+|.-. +|++|+.|.++||||+|+. ..+..+
T Consensus 201 vS~rHp-YlFs~gedk~VKCwDLe~-nkvI---R~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRtr-~~V~~l 273 (460)
T KOG0285|consen 201 VSKRHP-YLFSAGEDKQVKCWDLEY-NKVI---RHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRTR-ASVHVL 273 (460)
T ss_pred ecccCc-eEEEecCCCeeEEEechh-hhhH---HHhccccceeEEEeccccce-eEEecCCcceEEEeeeccc-ceEEEe
Confidence 999999 999999999999999977 5554 78999999999999999998 9999999999999999997 788999
Q ss_pred ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 317 KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 317 ~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
.+|..+|.++.+.|.+..++.+.. |.+|++||.+.|.
T Consensus 274 ~GH~~~V~~V~~~~~dpqvit~S~----D~tvrlWDl~agk 310 (460)
T KOG0285|consen 274 SGHTNPVASVMCQPTDPQVITGSH----DSTVRLWDLRAGK 310 (460)
T ss_pred cCCCCcceeEEeecCCCceEEecC----CceEEEeeeccCc
Confidence 999999999999999998888766 9999999998875
No 19
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.93 E-value=7e-24 Score=181.12 Aligned_cols=204 Identities=18% Similarity=0.223 Sum_probs=169.8
Q ss_pred eeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccC
Q 018235 70 LSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEE 149 (359)
Q Consensus 70 ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~~~ 149 (359)
++++|-+|. .++|.++| +..|.||+.-
T Consensus 59 ~~~~ws~Ds-----------r~ivSaSq-----DGklIvWDs~------------------------------------- 85 (343)
T KOG0286|consen 59 YAMDWSTDS-----------RRIVSASQ-----DGKLIVWDSF------------------------------------- 85 (343)
T ss_pred eeeEecCCc-----------CeEEeecc-----CCeEEEEEcc-------------------------------------
Confidence 688999995 58888886 5589999863
Q ss_pred CCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCC
Q 018235 150 GGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHK 229 (359)
Q Consensus 150 ~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 229 (359)
....++.+.--...|..++|+|.+ +++|+|+-|....||++....... .......+.+|+
T Consensus 86 ----TtnK~haipl~s~WVMtCA~sPSg-~~VAcGGLdN~Csiy~ls~~d~~g---------------~~~v~r~l~gHt 145 (343)
T KOG0286|consen 86 ----TTNKVHAIPLPSSWVMTCAYSPSG-NFVACGGLDNKCSIYPLSTRDAEG---------------NVRVSRELAGHT 145 (343)
T ss_pred ----cccceeEEecCceeEEEEEECCCC-CeEEecCcCceeEEEecccccccc---------------cceeeeeecCcc
Confidence 112223333446789999999999 899999999999999998621110 124456799999
Q ss_pred CceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCC
Q 018235 230 DEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG 309 (359)
Q Consensus 230 ~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~ 309 (359)
..+.+..|-+++ .|+||+.|.++.+||+.+ ++.. ..|.+|.+.|.+++++|...+.|+||+.|++.+|||+|.+
T Consensus 146 gylScC~f~dD~--~ilT~SGD~TCalWDie~-g~~~---~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~ 219 (343)
T KOG0286|consen 146 GYLSCCRFLDDN--HILTGSGDMTCALWDIET-GQQT---QVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG 219 (343)
T ss_pred ceeEEEEEcCCC--ceEecCCCceEEEEEccc-ceEE---EEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCc
Confidence 999999998854 799999999999999988 5544 6799999999999999955559999999999999999998
Q ss_pred CCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 310 KSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 310 ~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
.++++|.+|.++||+|+|.|+|.-++.+.. |.+.+++|.+.+.
T Consensus 220 -~c~qtF~ghesDINsv~ffP~G~afatGSD----D~tcRlyDlRaD~ 262 (343)
T KOG0286|consen 220 -QCVQTFEGHESDINSVRFFPSGDAFATGSD----DATCRLYDLRADQ 262 (343)
T ss_pred -ceeEeecccccccceEEEccCCCeeeecCC----CceeEEEeecCCc
Confidence 899999999999999999999998888776 9999999998753
No 20
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.93 E-value=1.1e-25 Score=199.61 Aligned_cols=209 Identities=16% Similarity=0.315 Sum_probs=173.5
Q ss_pred hHhhhhhcccccCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCC
Q 018235 55 TAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVD 134 (359)
Q Consensus 55 ~~Y~~~~~~~~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~ 134 (359)
+-++++. .+.+-|.-++.|.++. .++|.|. ...+|++|+.. ++
T Consensus 128 fnFEtil-QaHDs~Vr~m~ws~~g-----------~wmiSgD-----~gG~iKyWqpn-mn------------------- 170 (464)
T KOG0284|consen 128 FNFETIL-QAHDSPVRTMKWSHNG-----------TWMISGD-----KGGMIKYWQPN-MN------------------- 170 (464)
T ss_pred eeHHHHh-hhhcccceeEEEccCC-----------CEEEEcC-----CCceEEecccc-hh-------------------
Confidence 3444443 3468899999999986 6888887 45689998762 21
Q ss_pred CCCCCCCCCCCcccCCCCCCCeEEEEEec-CCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCC
Q 018235 135 SESSDSDEDSDDDEEGGSGTPILQLRKVA-HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGA 213 (359)
Q Consensus 135 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~ 213 (359)
.+ ..+.+ |...|.+++|+|.. ..|+|+++||+|+|||+..
T Consensus 171 --------------------nV--k~~~ahh~eaIRdlafSpnD-skF~t~SdDg~ikiWdf~~---------------- 211 (464)
T KOG0284|consen 171 --------------------NV--KIIQAHHAEAIRDLAFSPND-SKFLTCSDDGTIKIWDFRM---------------- 211 (464)
T ss_pred --------------------hh--HHhhHhhhhhhheeccCCCC-ceeEEecCCCeEEEEeccC----------------
Confidence 11 12224 55999999999977 8999999999999999987
Q ss_pred CCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEE
Q 018235 214 PQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFA 293 (359)
Q Consensus 214 ~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~la 293 (359)
.++-..+.||.-.|.+++|+|... +||||+.|..|++||+++ ++++ .++.+|+..|..+.|+|++. +|+
T Consensus 212 -----~kee~vL~GHgwdVksvdWHP~kg-LiasgskDnlVKlWDprS-g~cl---~tlh~HKntVl~~~f~~n~N-~Ll 280 (464)
T KOG0284|consen 212 -----PKEERVLRGHGWDVKSVDWHPTKG-LIASGSKDNLVKLWDPRS-GSCL---ATLHGHKNTVLAVKFNPNGN-WLL 280 (464)
T ss_pred -----CchhheeccCCCCcceeccCCccc-eeEEccCCceeEeecCCC-cchh---hhhhhccceEEEEEEcCCCC-eeE
Confidence 466677899999999999999986 999999999999999999 5554 67889999999999999995 999
Q ss_pred EEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 294 SCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 294 s~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
|+|.|.+++++|+|+. +.++.+.+|...|+++.|+|-..-|+..... |+.|..|...
T Consensus 281 t~skD~~~kv~DiR~m-kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~---Dgsvvh~~v~ 337 (464)
T KOG0284|consen 281 TGSKDQSCKVFDIRTM-KELFTYRGHKKDVTSLTWHPLNESLFTSGGS---DGSVVHWVVG 337 (464)
T ss_pred EccCCceEEEEehhHh-HHHHHhhcchhhheeeccccccccceeeccC---CCceEEEecc
Confidence 9999999999999976 7788899999999999999987766655443 8888888765
No 21
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=4e-24 Score=205.91 Aligned_cols=169 Identities=20% Similarity=0.337 Sum_probs=149.4
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
..+.+|...|++++|+|++ .++++++.|++|+|||+.. ....+.++.+|...|++++|+
T Consensus 197 ~~l~~h~~~v~~~~fs~d~-~~l~s~s~D~tiriwd~~~--------------------~~~~~~~l~gH~~~v~~~~f~ 255 (456)
T KOG0266|consen 197 RELSGHTRGVSDVAFSPDG-SYLLSGSDDKTLRIWDLKD--------------------DGRNLKTLKGHSTYVTSVAFS 255 (456)
T ss_pred ccccccccceeeeEECCCC-cEEEEecCCceEEEeeccC--------------------CCeEEEEecCCCCceEEEEec
Confidence 3447899999999999999 7999999999999999955 357789999999999999999
Q ss_pred CCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCC-ceEEee
Q 018235 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS-ALTSFK 317 (359)
Q Consensus 239 p~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~-~~~~~~ 317 (359)
|.+. +++||+.|++|+|||+++ +++. ..+.+|...|.+++|++++. +|++++.|+.|+|||+.++.. ++..+.
T Consensus 256 p~g~-~i~Sgs~D~tvriWd~~~-~~~~---~~l~~hs~~is~~~f~~d~~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~ 329 (456)
T KOG0266|consen 256 PDGN-LLVSGSDDGTVRIWDVRT-GECV---RKLKGHSDGISGLAFSPDGN-LLVSASYDGTIRVWDLETGSKLCLKLLS 329 (456)
T ss_pred CCCC-EEEEecCCCcEEEEeccC-CeEE---EeeeccCCceEEEEECCCCC-EEEEcCCCccEEEEECCCCceeeeeccc
Confidence 9996 999999999999999988 6655 78999999999999999999 999999999999999999821 355665
Q ss_pred cCCC--CEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 318 AHNA--DVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 318 ~h~~--~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
.+.. ++++++|+|++.+++.... ++.+++|+.+.+.+
T Consensus 330 ~~~~~~~~~~~~fsp~~~~ll~~~~----d~~~~~w~l~~~~~ 368 (456)
T KOG0266|consen 330 GAENSAPVTSVQFSPNGKYLLSASL----DRTLKLWDLRSGKS 368 (456)
T ss_pred CCCCCCceeEEEECCCCcEEEEecC----CCeEEEEEccCCcc
Confidence 5554 4999999999999998877 88999999987753
No 22
>PTZ00421 coronin; Provisional
Probab=99.92 E-value=1.3e-23 Score=202.46 Aligned_cols=176 Identities=15% Similarity=0.268 Sum_probs=145.5
Q ss_pred EecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCC
Q 018235 161 KVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI 240 (359)
Q Consensus 161 ~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~ 240 (359)
+.+|.+.|++++|+|.+..+||+++.||+|+|||+....... ....++..+.+|...|.+++|+|.
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~--------------~~~~~l~~L~gH~~~V~~l~f~P~ 136 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQ--------------NISDPIVHLQGHTKKVGIVSFHPS 136 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccc--------------ccCcceEEecCCCCcEEEEEeCcC
Confidence 469999999999999444799999999999999997621000 013567889999999999999998
Q ss_pred CCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCC
Q 018235 241 TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHN 320 (359)
Q Consensus 241 ~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~ 320 (359)
+..+|+||+.|++|+|||+++ +... ..+.+|...|.+++|+|++. +|++++.|++|+|||+|++ ..+..+.+|.
T Consensus 137 ~~~iLaSgs~DgtVrIWDl~t-g~~~---~~l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rsg-~~v~tl~~H~ 210 (493)
T PTZ00421 137 AMNVLASAGADMVVNVWDVER-GKAV---EVIKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRDG-TIVSSVEAHA 210 (493)
T ss_pred CCCEEEEEeCCCEEEEEECCC-CeEE---EEEcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCCC-cEEEEEecCC
Confidence 755999999999999999987 4433 56788999999999999998 9999999999999999997 6777888887
Q ss_pred CC-EEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 321 AD-VNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 321 ~~-V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
.. +..+.|.+++..++....+.+.++.|++||.+..
T Consensus 211 ~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~ 247 (493)
T PTZ00421 211 SAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKM 247 (493)
T ss_pred CCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCC
Confidence 65 4577899988877765544455789999998764
No 23
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.92 E-value=4.7e-24 Score=183.50 Aligned_cols=245 Identities=18% Similarity=0.292 Sum_probs=191.6
Q ss_pred CCceeeeC---------hhHhhhhhcccccCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCC
Q 018235 46 EGEELQCD---------PTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISG 116 (359)
Q Consensus 46 ~~~~l~~~---------~~~Y~~~~~~~~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~ 116 (359)
.|-+|+|| |.-|+...-....-||-...+-||+ .++..|+ .+-.|+|+++..+-.
T Consensus 83 ~giDle~dadaq~~s~e~~~yEt~ylt~HK~~cR~aafs~DG-----------~lvATGs-----aD~SIKildvermla 146 (430)
T KOG0640|consen 83 AGIDLEFDADAQGSSPEPSEYETKYLTSHKSPCRAAAFSPDG-----------SLVATGS-----ADASIKILDVERMLA 146 (430)
T ss_pred CceeeeeccccccCCCCCcccceEEEeecccceeeeeeCCCC-----------cEEEccC-----CcceEEEeehhhhhh
Confidence 37778887 6778888888888999999999996 5666665 466899999964432
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECC
Q 018235 117 KRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLR 196 (359)
Q Consensus 117 ~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~ 196 (359)
.. .. .++... +.....|++ .++..|..+||++.|+|.. .++++++.|++|++||+.
T Consensus 147 ks-~~------------~em~~~---------~~qa~hPvI-RTlYDH~devn~l~FHPre-~ILiS~srD~tvKlFDfs 202 (430)
T KOG0640|consen 147 KS-KP------------KEMISG---------DTQARHPVI-RTLYDHVDEVNDLDFHPRE-TILISGSRDNTVKLFDFS 202 (430)
T ss_pred hc-ch------------hhhccC---------CcccCCceE-eehhhccCcccceeecchh-heEEeccCCCeEEEEecc
Confidence 21 11 011100 000123444 8899999999999999988 899999999999999998
Q ss_pred CCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCC
Q 018235 197 SHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHS 276 (359)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~ 276 (359)
+... .+....| ....++.+|+|+|.|. +|+.|..-.++++||+++ -++.+...+-..|+
T Consensus 203 K~sa------------------KrA~K~~-qd~~~vrsiSfHPsGe-fllvgTdHp~~rlYdv~T-~QcfvsanPd~qht 261 (430)
T KOG0640|consen 203 KTSA------------------KRAFKVF-QDTEPVRSISFHPSGE-FLLVGTDHPTLRLYDVNT-YQCFVSANPDDQHT 261 (430)
T ss_pred cHHH------------------HHHHHHh-hccceeeeEeecCCCc-eEEEecCCCceeEEeccc-eeEeeecCcccccc
Confidence 7321 1112223 2345899999999999 999999999999999988 44444455777899
Q ss_pred CCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe-ecCC-CCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 277 ASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF-KAHN-ADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 277 ~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~-~~h~-~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
..|++|.+++++. +.+++|.||.|+|||--+. +++.++ .+|. +.|.+..|..++++++.+.. |.++++|++.
T Consensus 262 ~ai~~V~Ys~t~~-lYvTaSkDG~IklwDGVS~-rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~----DS~vkLWEi~ 335 (430)
T KOG0640|consen 262 GAITQVRYSSTGS-LYVTASKDGAIKLWDGVSN-RCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK----DSTVKLWEIS 335 (430)
T ss_pred cceeEEEecCCcc-EEEEeccCCcEEeeccccH-HHHHHHHhhcCCceeeeEEEccCCeEEeecCC----cceeeeeeec
Confidence 9999999999999 9999999999999998887 788888 6775 57999999999999998765 8999999998
Q ss_pred CCc
Q 018235 355 RGE 357 (359)
Q Consensus 355 ~g~ 357 (359)
+|.
T Consensus 336 t~R 338 (430)
T KOG0640|consen 336 TGR 338 (430)
T ss_pred CCc
Confidence 875
No 24
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.92 E-value=2e-23 Score=183.81 Aligned_cols=267 Identities=18% Similarity=0.233 Sum_probs=189.7
Q ss_pred CeeeeCCcccCCCCceeeeChhHhhhhhcccccCcceeEEEEeccC---------CCC--------cccCCce-------
Q 018235 34 TKVWQPGVDKLEEGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTL---------GLV--------RNEFPHT------- 89 (359)
Q Consensus 34 ~~~~~~~~~~~~~~~~l~~~~~~Y~~~~~~~~~wP~ls~~~~pd~~---------~~~--------~~~~~~~------- 89 (359)
+.|+.+... +|-++|...+|-.--+.++.||.-++.+|.-.. +.. ...+|.-
T Consensus 75 fDVi~D~LG----~eR~e~P~~~Ylv~gtQa~~~~~N~l~vlkl~nl~~t~~~~~gd~~~~~eddedD~~P~~~~~~i~h 150 (440)
T KOG0302|consen 75 FDVIPDRLG----DERTEFPHTAYLVAGTQALDAPDNELMVLKLSNLHKTRNPNDGDGEDEEEDDEDDRKPQIEMKSIPH 150 (440)
T ss_pred eeeecCCCC----cccccCchHhhhhhhhhccccccCceEEEEeeeeecccCCccCCCCCccccchhhcccccccccccc
Confidence 445554443 678999999999999999999999988875320 000 0113421
Q ss_pred -------------EEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCe
Q 018235 90 -------------AYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPI 156 (359)
Q Consensus 90 -------------~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~ 156 (359)
.-.++++.+ +.+.++|+.+...-+--..+ .. ....+...
T Consensus 151 ~g~~NRvr~~~~~~~~~~asws---e~G~V~Vw~l~~~l~~l~~~---------------~~----------~~~~s~~~ 202 (440)
T KOG0302|consen 151 YGGINRVRVSRLGNEVLCASWS---ENGRVQVWDLAPHLNALSEP---------------GL----------EVKDSEFR 202 (440)
T ss_pred ccccceeeecccCCcceeeeec---ccCcEEEEEchhhhhhhcCc---------------cc----------cccccccC
Confidence 112333333 35677788774221110000 00 00001222
Q ss_pred EEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEE
Q 018235 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAID 236 (359)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 236 (359)
-.+++.+|.+.=..+.|+|.....++||.--+.|++|..... .+. .-...|.+|+..|..|+
T Consensus 203 Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g--~W~----------------vd~~Pf~gH~~SVEDLq 264 (440)
T KOG0302|consen 203 PLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTG--SWK----------------VDQRPFTGHTKSVEDLQ 264 (440)
T ss_pred ceEEecccCccceeeecccccccccccCccccceEeeeeccC--cee----------------ecCccccccccchhhhc
Confidence 235667999999999999966556888888899999988761 110 11134678999999999
Q ss_pred eCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCC--CCceE
Q 018235 237 WNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG--KSALT 314 (359)
Q Consensus 237 ~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~--~~~~~ 314 (359)
|||...+.|+||++||+|+|||+|.+.+.. .....+|.+.|+-|+|+...+ +||+|+.||+++|||+|+. .+++.
T Consensus 265 WSptE~~vfaScS~DgsIrIWDiRs~~~~~--~~~~kAh~sDVNVISWnr~~~-lLasG~DdGt~~iwDLR~~~~~~pVA 341 (440)
T KOG0302|consen 265 WSPTEDGVFASCSCDGSIRIWDIRSGPKKA--AVSTKAHNSDVNVISWNRREP-LLASGGDDGTLSIWDLRQFKSGQPVA 341 (440)
T ss_pred cCCccCceEEeeecCceEEEEEecCCCccc--eeEeeccCCceeeEEccCCcc-eeeecCCCceEEEEEhhhccCCCcce
Confidence 999999999999999999999999852221 123478999999999999999 9999999999999999986 35788
Q ss_pred EeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 315 SFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 315 ~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
.++.|.++|++|.|+|...-++.... .|+.|.|||.+..
T Consensus 342 ~fk~Hk~pItsieW~p~e~s~iaasg---~D~QitiWDlsvE 380 (440)
T KOG0302|consen 342 TFKYHKAPITSIEWHPHEDSVIAASG---EDNQITIWDLSVE 380 (440)
T ss_pred eEEeccCCeeEEEeccccCceEEecc---CCCcEEEEEeecc
Confidence 99999999999999998765444433 2999999998753
No 25
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.92 E-value=3.5e-23 Score=173.28 Aligned_cols=171 Identities=20% Similarity=0.241 Sum_probs=138.9
Q ss_pred EEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEe
Q 018235 158 QLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (359)
Q Consensus 158 ~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (359)
...+.+|+.-|..+.|..+| ..++||++||+++|||++.. ...+.| .|..+|+++..
T Consensus 76 v~t~e~h~kNVtaVgF~~dg-rWMyTgseDgt~kIWdlR~~---------------------~~qR~~-~~~spVn~vvl 132 (311)
T KOG0315|consen 76 VATFEGHTKNVTAVGFQCDG-RWMYTGSEDGTVKIWDLRSL---------------------SCQRNY-QHNSPVNTVVL 132 (311)
T ss_pred eeEEeccCCceEEEEEeecC-eEEEecCCCceEEEEeccCc---------------------ccchhc-cCCCCcceEEe
Confidence 35667999999999999999 89999999999999999982 222333 34467777777
Q ss_pred CCCCCCeEEEEcCCCcEEEEecCCC---------------------------------------------CcceecCccc
Q 018235 238 NPITTGRLVTGDCNSCIYLWEPASD---------------------------------------------ATWNVDPNPF 272 (359)
Q Consensus 238 sp~~~~~l~sgs~dg~I~lwd~~~~---------------------------------------------~~~~~~~~~~ 272 (359)
+|+.. .|++|+.+|.|++||+.+. ...+.++..|
T Consensus 133 hpnQt-eLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~ 211 (311)
T KOG0315|consen 133 HPNQT-ELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKF 211 (311)
T ss_pred cCCcc-eEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhhe
Confidence 77765 7777777777777777642 1123345667
Q ss_pred cCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEe
Q 018235 273 IGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILD 352 (359)
Q Consensus 273 ~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd 352 (359)
..|...+..+.+||+++ +||+||.|.+++||.+...-+....+.+|...++..+|+.+|.+|+.+.. |+..++|+
T Consensus 212 ~ah~~~il~C~lSPd~k-~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTass----d~~~rlW~ 286 (311)
T KOG0315|consen 212 QAHNGHILRCLLSPDVK-YLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASS----DHTARLWD 286 (311)
T ss_pred ecccceEEEEEECCCCc-EEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCC----CCceeecc
Confidence 88999999999999999 99999999999999998862334566899999999999999999998876 89999999
Q ss_pred CcCCc
Q 018235 353 CSRGE 357 (359)
Q Consensus 353 ~~~g~ 357 (359)
.+.++
T Consensus 287 ~~~~k 291 (311)
T KOG0315|consen 287 LSAGK 291 (311)
T ss_pred cccCc
Confidence 99886
No 26
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.92 E-value=3.3e-23 Score=196.22 Aligned_cols=171 Identities=20% Similarity=0.330 Sum_probs=146.4
Q ss_pred EEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEE
Q 018235 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAID 236 (359)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 236 (359)
.+.+..+|...++++.++|+| .++|||++||.|+|||... +-+..+|..|+..++++.
T Consensus 342 YVlKQQgH~~~i~~l~YSpDg-q~iaTG~eDgKVKvWn~~S---------------------gfC~vTFteHts~Vt~v~ 399 (893)
T KOG0291|consen 342 YVLKQQGHSDRITSLAYSPDG-QLIATGAEDGKVKVWNTQS---------------------GFCFVTFTEHTSGVTAVQ 399 (893)
T ss_pred eeeeccccccceeeEEECCCC-cEEEeccCCCcEEEEeccC---------------------ceEEEEeccCCCceEEEE
Confidence 335667999999999999999 8999999999999999987 678999999999999999
Q ss_pred eCCCCCCeEEEEcCCCcEEEEecCCCCc------------------------------------cee----cCccccCCC
Q 018235 237 WNPITTGRLVTGDCNSCIYLWEPASDAT------------------------------------WNV----DPNPFIGHS 276 (359)
Q Consensus 237 ~sp~~~~~l~sgs~dg~I~lwd~~~~~~------------------------------------~~~----~~~~~~~h~ 276 (359)
|+..+. .++|.+-||+|+.||+..... |.+ .+..+.||.
T Consensus 400 f~~~g~-~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHE 478 (893)
T KOG0291|consen 400 FTARGN-VLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHE 478 (893)
T ss_pred EEecCC-EEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCC
Confidence 999998 999999999999999964210 000 013456999
Q ss_pred CCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 277 ASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 277 ~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
++|.+++|+|.+. +|||+|-|++||+||+-.....+-++ .+..++..++|+|+|+-++...- ++.|.+||+..+
T Consensus 479 gPVs~l~f~~~~~-~LaS~SWDkTVRiW~if~s~~~vEtl-~i~sdvl~vsfrPdG~elaVaTl----dgqItf~d~~~~ 552 (893)
T KOG0291|consen 479 GPVSGLSFSPDGS-LLASGSWDKTVRIWDIFSSSGTVETL-EIRSDVLAVSFRPDGKELAVATL----DGQITFFDIKEA 552 (893)
T ss_pred CcceeeEEccccC-eEEeccccceEEEEEeeccCceeeeE-eeccceeEEEEcCCCCeEEEEEe----cceEEEEEhhhc
Confidence 9999999999999 99999999999999998763444455 47788999999999999998876 889999998754
No 27
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=2.2e-23 Score=193.77 Aligned_cols=192 Identities=18% Similarity=0.254 Sum_probs=170.3
Q ss_pred EEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCeEEEEEecCCCcee
Q 018235 90 AYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVN 169 (359)
Q Consensus 90 ~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~H~~~V~ 169 (359)
..+|+|+ ++-+|.|+.+. +......+.+|..-|.
T Consensus 68 nWiv~Gs-----DD~~IrVfnyn-----------------------------------------t~ekV~~FeAH~DyIR 101 (794)
T KOG0276|consen 68 NWIVTGS-----DDMQIRVFNYN-----------------------------------------TGEKVKTFEAHSDYIR 101 (794)
T ss_pred ceEEEec-----CCceEEEEecc-----------------------------------------cceeeEEeecccccee
Confidence 6888888 67799999873 3334567889999999
Q ss_pred eEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEc
Q 018235 170 RIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGD 249 (359)
Q Consensus 170 ~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs 249 (359)
+|+.+|..| ++.|+|+|-+|++||... ...+..+|.||...|.+++|+|..++.+|||+
T Consensus 102 ~iavHPt~P-~vLtsSDDm~iKlW~we~--------------------~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~s 160 (794)
T KOG0276|consen 102 SIAVHPTLP-YVLTSSDDMTIKLWDWEN--------------------EWACEQTFEGHEHYVMQVAFNPKDPNTFASAS 160 (794)
T ss_pred eeeecCCCC-eEEecCCccEEEEeeccC--------------------ceeeeeEEcCcceEEEEEEecCCCccceeeee
Confidence 999999995 778889999999999998 57888999999999999999999999999999
Q ss_pred CCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCC-CCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEE
Q 018235 250 CNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTE-PDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISW 328 (359)
Q Consensus 250 ~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~-~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~ 328 (359)
-|++|++|.+-+ ..+. .++.+|...|++|.+-+-+ +.+|+||++|.+|+|||..+. .|+.++.+|...|+.++|
T Consensus 161 LDrTVKVWslgs-~~~n---fTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk-~CV~TLeGHt~Nvs~v~f 235 (794)
T KOG0276|consen 161 LDRTVKVWSLGS-PHPN---FTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK-SCVQTLEGHTNNVSFVFF 235 (794)
T ss_pred ccccEEEEEcCC-CCCc---eeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH-HHHHHhhcccccceEEEe
Confidence 999999999966 3333 7899999999999998765 339999999999999999997 899999999999999999
Q ss_pred cCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 329 NRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 329 s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
+|.=++++.+.. |++++||+..+-+
T Consensus 236 hp~lpiiisgsE----DGTvriWhs~Ty~ 260 (794)
T KOG0276|consen 236 HPELPIIISGSE----DGTVRIWNSKTYK 260 (794)
T ss_pred cCCCcEEEEecC----CccEEEecCccee
Confidence 999999998876 9999999987644
No 28
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.91 E-value=1.4e-23 Score=191.29 Aligned_cols=193 Identities=16% Similarity=0.200 Sum_probs=145.1
Q ss_pred EEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCC------------------------
Q 018235 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQG------------------------ 212 (359)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~------------------------ 212 (359)
.++++.+|+..|.++++.|.| ..|+||+.|-+|++||+..............+..
T Consensus 159 hEi~l~hgtk~Vsal~~Dp~G-aR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aq 237 (641)
T KOG0772|consen 159 HEIQLKHGTKIVSALAVDPSG-ARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQ 237 (641)
T ss_pred ceEeccCCceEEEEeeecCCC-ceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcc
Confidence 457788899999999999999 8999999999999999987443322211111100
Q ss_pred -----CCCC-----CC----CCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcce--ecCccccCCC
Q 018235 213 -----APQV-----SN----QSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWN--VDPNPFIGHS 276 (359)
Q Consensus 213 -----~~~~-----~~----~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~--~~~~~~~~h~ 276 (359)
.++. .+ ..-...-+||...+++.+|+|...+.|+|++.||+++||++....+.. ...+...+-.
T Consensus 238 akl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~R 317 (641)
T KOG0772|consen 238 AKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKR 317 (641)
T ss_pred eeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcc
Confidence 0000 00 011223478999999999999999999999999999999998643322 1112233455
Q ss_pred CCeEEEEecCCCCCEEEEEeCCCcEEEEECCCC-CCceEEe-ecCCC--CEEEEEEcCCCCeEEEEeeecccceEEEEEe
Q 018235 277 ASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG-KSALTSF-KAHNA--DVNVISWNRCWLAVCWHLEVMMEHFLFMILD 352 (359)
Q Consensus 277 ~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~-~~~~~~~-~~h~~--~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd 352 (359)
-+++.++|+|++. +||+|+.||+|.+|+.+.. ..+...+ .+|.. .|+||+|+++|.+|+.... |..+++||
T Consensus 318 v~~tsC~~nrdg~-~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~----D~tLKvWD 392 (641)
T KOG0772|consen 318 VPVTSCAWNRDGK-LIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGF----DDTLKVWD 392 (641)
T ss_pred cCceeeecCCCcc-hhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccC----CCceeeee
Confidence 6889999999999 8999999999999998765 2344444 78877 9999999999999987765 99999999
Q ss_pred CcC
Q 018235 353 CSR 355 (359)
Q Consensus 353 ~~~ 355 (359)
.+.
T Consensus 393 Lrq 395 (641)
T KOG0772|consen 393 LRQ 395 (641)
T ss_pred ccc
Confidence 875
No 29
>PTZ00421 coronin; Provisional
Probab=99.91 E-value=4.8e-22 Score=191.55 Aligned_cols=212 Identities=13% Similarity=0.148 Sum_probs=161.4
Q ss_pred cCcceeEEEEe-ccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018235 66 GWPCLSFDIVR-DTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDS 144 (359)
Q Consensus 66 ~wP~ls~~~~p-d~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~ 144 (359)
.=+.+++.|.| +. .+|+.|+ .++.|.||++..-...
T Consensus 75 ~~~V~~v~fsP~d~-----------~~LaSgS-----~DgtIkIWdi~~~~~~--------------------------- 111 (493)
T PTZ00421 75 EGPIIDVAFNPFDP-----------QKLFTAS-----EDGTIMGWGIPEEGLT--------------------------- 111 (493)
T ss_pred CCCEEEEEEcCCCC-----------CEEEEEe-----CCCEEEEEecCCCccc---------------------------
Confidence 35678889988 42 4677776 5779999988310000
Q ss_pred CcccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEE
Q 018235 145 DDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVK 224 (359)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (359)
. ........+.+|...|.+++|+|.+.++|++++.|++|+|||+.. ..++..
T Consensus 112 --~-----~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~t---------------------g~~~~~ 163 (493)
T PTZ00421 112 --Q-----NISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVER---------------------GKAVEV 163 (493)
T ss_pred --c-----ccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCC---------------------CeEEEE
Confidence 0 011123456799999999999998767999999999999999987 566778
Q ss_pred ecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCC-eEEEEecCCCCCEEEEEe----CCC
Q 018235 225 FGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSAS-VEDLQWSPTEPDVFASCS----VDG 299 (359)
Q Consensus 225 ~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~-V~~v~~sp~~~~~las~s----~Dg 299 (359)
+.+|...|++++|+|++. +|++|+.|++|++||+++ +..+ ..+.+|... +..+.|+|.+. .|++++ .|+
T Consensus 164 l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rs-g~~v---~tl~~H~~~~~~~~~w~~~~~-~ivt~G~s~s~Dr 237 (493)
T PTZ00421 164 IKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRD-GTIV---SSVEAHASAKSQRCLWAKRKD-LIITLGCSKSQQR 237 (493)
T ss_pred EcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCC-CcEE---EEEecCCCCcceEEEEcCCCC-eEEEEecCCCCCC
Confidence 899999999999999998 999999999999999998 4443 456778754 45788999887 555443 489
Q ss_pred cEEEEECCCCCCceEEeecC-CCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 300 HIAIWDTRVGKSALTSFKAH-NADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 300 ~I~iwD~r~~~~~~~~~~~h-~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
.|+|||+|....++.....+ ...+....|++++.+++.+.. .++.|++|+...+.
T Consensus 238 ~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggk---gDg~Iriwdl~~~~ 293 (493)
T PTZ00421 238 QIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSK---GEGNIRCFELMNER 293 (493)
T ss_pred eEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEe---CCCeEEEEEeeCCc
Confidence 99999999874555544333 345677789999998877653 28899999998765
No 30
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.91 E-value=4.2e-23 Score=180.69 Aligned_cols=190 Identities=22% Similarity=0.377 Sum_probs=166.2
Q ss_pred ceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCeEEEEEecCCCc
Q 018235 88 HTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGC 167 (359)
Q Consensus 88 ~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~H~~~ 167 (359)
...+|+.|+ .+..|.||++. ..++..++.+|...
T Consensus 162 ~n~wf~tgs-----~DrtikIwDla-----------------------------------------tg~LkltltGhi~~ 195 (460)
T KOG0285|consen 162 GNEWFATGS-----ADRTIKIWDLA-----------------------------------------TGQLKLTLTGHIET 195 (460)
T ss_pred CceeEEecC-----CCceeEEEEcc-----------------------------------------cCeEEEeecchhhe
Confidence 346888777 56789999983 77888899999999
Q ss_pred eeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEE
Q 018235 168 VNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVT 247 (359)
Q Consensus 168 V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s 247 (359)
|..+++++.. .+++++++|+.|+.||+.. .+.++.+.||-..|++|+.+|.-. .|+|
T Consensus 196 vr~vavS~rH-pYlFs~gedk~VKCwDLe~---------------------nkvIR~YhGHlS~V~~L~lhPTld-vl~t 252 (460)
T KOG0285|consen 196 VRGVAVSKRH-PYLFSAGEDKQVKCWDLEY---------------------NKVIRHYHGHLSGVYCLDLHPTLD-VLVT 252 (460)
T ss_pred eeeeeecccC-ceEEEecCCCeeEEEechh---------------------hhhHHHhccccceeEEEeccccce-eEEe
Confidence 9999999988 5788899999999999998 677889999999999999999998 9999
Q ss_pred EcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEE
Q 018235 248 GDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVIS 327 (359)
Q Consensus 248 gs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~ 327 (359)
|+.|.++++||+|+..+ + ..+.||+.+|..|.+.|..+ -+++||.|++||+||++.+ +.+.++..|...|.+++
T Consensus 253 ~grDst~RvWDiRtr~~-V---~~l~GH~~~V~~V~~~~~dp-qvit~S~D~tvrlWDl~ag-kt~~tlt~hkksvral~ 326 (460)
T KOG0285|consen 253 GGRDSTIRVWDIRTRAS-V---HVLSGHTNPVASVMCQPTDP-QVITGSHDSTVRLWDLRAG-KTMITLTHHKKSVRALC 326 (460)
T ss_pred cCCcceEEEeeecccce-E---EEecCCCCcceeEEeecCCC-ceEEecCCceEEEeeeccC-ceeEeeecccceeeEEe
Confidence 99999999999998433 3 67999999999999999998 8999999999999999998 78888999999999999
Q ss_pred EcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 328 WNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 328 ~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
.+|....++.++. ..|+-|+...|.
T Consensus 327 lhP~e~~fASas~-----dnik~w~~p~g~ 351 (460)
T KOG0285|consen 327 LHPKENLFASASP-----DNIKQWKLPEGE 351 (460)
T ss_pred cCCchhhhhccCC-----ccceeccCCccc
Confidence 9998877766543 347778766553
No 31
>PTZ00420 coronin; Provisional
Probab=99.91 E-value=8.2e-22 Score=191.15 Aligned_cols=178 Identities=16% Similarity=0.237 Sum_probs=140.2
Q ss_pred EEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEe
Q 018235 158 QLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (359)
Q Consensus 158 ~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (359)
...+.+|.+.|++++|+|....+||||+.||+|+|||+........ ....++..+.+|...|.+++|
T Consensus 67 v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~-------------~i~~p~~~L~gH~~~V~sVaf 133 (568)
T PTZ00420 67 VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK-------------EIKDPQCILKGHKKKISIIDW 133 (568)
T ss_pred EEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc-------------ccccceEEeecCCCcEEEEEE
Confidence 3566799999999999998558999999999999999975211000 012456678999999999999
Q ss_pred CCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEee
Q 018235 238 NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK 317 (359)
Q Consensus 238 sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~ 317 (359)
+|.+..+|+||+.|++|+|||++++ ... ..+. |...|.+++|+|+|. +|++++.|+.|+|||+|++ ..+..+.
T Consensus 134 ~P~g~~iLaSgS~DgtIrIWDl~tg-~~~---~~i~-~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg-~~i~tl~ 206 (568)
T PTZ00420 134 NPMNYYIMCSSGFDSFVNIWDIENE-KRA---FQIN-MPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQ-EIASSFH 206 (568)
T ss_pred CCCCCeEEEEEeCCCeEEEEECCCC-cEE---EEEe-cCCcEEEEEECCCCC-EEEEEecCCEEEEEECCCC-cEEEEEe
Confidence 9998756789999999999999874 322 2333 567899999999999 9999999999999999997 7777888
Q ss_pred cCCCCEEE-----EEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 318 AHNADVNV-----ISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 318 ~h~~~V~~-----i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
+|.+.+.+ ..|++++.+++.+....+..+.|+|||.+.
T Consensus 207 gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~ 249 (568)
T PTZ00420 207 IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKN 249 (568)
T ss_pred cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCC
Confidence 99876543 345688888887655333346899999884
No 32
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.90 E-value=2.7e-22 Score=176.79 Aligned_cols=166 Identities=23% Similarity=0.356 Sum_probs=143.6
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
..+.+|.++|..+.|++. ..+.+++-|.+|+.||+.. +....++.+ ....++++.+
T Consensus 254 vtl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDlet---------------------g~~~~~~~~-~ksl~~i~~~ 309 (423)
T KOG0313|consen 254 VTLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLET---------------------GGLKSTLTT-NKSLNCISYS 309 (423)
T ss_pred EEecccccceeeEEEcCC--CceEeecccceEEEEEeec---------------------ccceeeeec-CcceeEeecc
Confidence 466799999999999994 5899999999999999998 455555554 3478899999
Q ss_pred CCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeec
Q 018235 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA 318 (359)
Q Consensus 239 p~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~ 318 (359)
|... +|++|+.|..|++||+|+++..+ ..+.|.+|+.-|.++.|+|.+.+.|++++.|+++++||+|+...++..+.+
T Consensus 310 ~~~~-Ll~~gssdr~irl~DPR~~~gs~-v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~ 387 (423)
T KOG0313|consen 310 PLSK-LLASGSSDRHIRLWDPRTGDGSV-VSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAG 387 (423)
T ss_pred cccc-eeeecCCCCceeecCCCCCCCce-eEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeecc
Confidence 9887 99999999999999999965433 357899999999999999999999999999999999999998669999999
Q ss_pred CCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 319 HNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 319 h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
|...|.++.|+. +.+++.+.. |+.|+|+....
T Consensus 388 h~DKvl~vdW~~-~~~IvSGGa----D~~l~i~~~~~ 419 (423)
T KOG0313|consen 388 HNDKVLSVDWNE-GGLIVSGGA----DNKLRIFKGSP 419 (423)
T ss_pred CCceEEEEeccC-CceEEeccC----cceEEEecccc
Confidence 999999999995 556676665 99999987653
No 33
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.90 E-value=8e-22 Score=189.97 Aligned_cols=203 Identities=20% Similarity=0.330 Sum_probs=168.6
Q ss_pred cceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 018235 68 PCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDD 147 (359)
Q Consensus 68 P~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~ 147 (359)
.+..+.|.||. .+++.|+ .+..|.||++.
T Consensus 205 ~v~~~~fs~d~-----------~~l~s~s-----~D~tiriwd~~----------------------------------- 233 (456)
T KOG0266|consen 205 GVSDVAFSPDG-----------SYLLSGS-----DDKTLRIWDLK----------------------------------- 233 (456)
T ss_pred ceeeeEECCCC-----------cEEEEec-----CCceEEEeecc-----------------------------------
Confidence 35566666764 4777777 57799999882
Q ss_pred cCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecC
Q 018235 148 EEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGG 227 (359)
Q Consensus 148 ~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (359)
........+.+|...|+++.|+|++ +++++|+.|++|+|||+.. ..++..+.+
T Consensus 234 -----~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~---------------------~~~~~~l~~ 286 (456)
T KOG0266|consen 234 -----DDGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRT---------------------GECVRKLKG 286 (456)
T ss_pred -----CCCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccC---------------------CeEEEeeec
Confidence 1335667788999999999999999 9999999999999999997 688999999
Q ss_pred CCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCc-ceecCccccCCCC--CeEEEEecCCCCCEEEEEeCCCcEEEE
Q 018235 228 HKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDAT-WNVDPNPFIGHSA--SVEDLQWSPTEPDVFASCSVDGHIAIW 304 (359)
Q Consensus 228 h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~-~~~~~~~~~~h~~--~V~~v~~sp~~~~~las~s~Dg~I~iw 304 (359)
|...|.+++|++++. +|++++.|+.|++||+.++.. +. ..+.++.. .++.++|+|++. +|++++.|+.+++|
T Consensus 287 hs~~is~~~f~~d~~-~l~s~s~d~~i~vwd~~~~~~~~~---~~~~~~~~~~~~~~~~fsp~~~-~ll~~~~d~~~~~w 361 (456)
T KOG0266|consen 287 HSDGISGLAFSPDGN-LLVSASYDGTIRVWDLETGSKLCL---KLLSGAENSAPVTSVQFSPNGK-YLLSASLDRTLKLW 361 (456)
T ss_pred cCCceEEEEECCCCC-EEEEcCCCccEEEEECCCCceeee---ecccCCCCCCceeEEEECCCCc-EEEEecCCCeEEEE
Confidence 999999999999998 999999999999999988432 12 34555554 499999999999 99999999999999
Q ss_pred ECCCCCCceEEeecCCCCE---EEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 305 DTRVGKSALTSFKAHNADV---NVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 305 D~r~~~~~~~~~~~h~~~V---~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
|++.. ..+..+..|...+ .+...++.+.+++.+.. ++.|.+|+..++.+
T Consensus 362 ~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~----d~~v~~~~~~s~~~ 413 (456)
T KOG0266|consen 362 DLRSG-KSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSE----DGSVYVWDSSSGGI 413 (456)
T ss_pred EccCC-cceeeecccCCcceeEecccccCCCCeEEEEeC----CceEEEEeCCccch
Confidence 99988 7777887787653 34455678888888877 99999999987653
No 34
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.90 E-value=8.5e-23 Score=193.08 Aligned_cols=179 Identities=17% Similarity=0.222 Sum_probs=153.6
Q ss_pred eEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEE
Q 018235 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAI 235 (359)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 235 (359)
.+..+..+|.+.|.+++++..+..+|+++|.|+++++|++......- .+. ......+...|...|+++
T Consensus 402 ~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~-~~~-----------~~~~~~t~~aHdKdIN~V 469 (775)
T KOG0319|consen 402 LCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETA-FPI-----------VLTCRYTERAHDKDINCV 469 (775)
T ss_pred hhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCccccc-ccc-----------eehhhHHHHhhcccccce
Confidence 34456679999999999998888999999999999999998711000 000 011222456799999999
Q ss_pred EeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEE
Q 018235 236 DWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS 315 (359)
Q Consensus 236 ~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~ 315 (359)
+.+|... ++||||.|.+.+||++.+ .... ..+.||+..|.||+|+|..+ ++||||.|++|+||.+.+. .++.+
T Consensus 470 aia~ndk-LiAT~SqDktaKiW~le~-~~l~---~vLsGH~RGvw~V~Fs~~dq-~laT~SgD~TvKIW~is~f-SClkT 542 (775)
T KOG0319|consen 470 AIAPNDK-LIATGSQDKTAKIWDLEQ-LRLL---GVLSGHTRGVWCVSFSKNDQ-LLATCSGDKTVKIWSISTF-SCLKT 542 (775)
T ss_pred EecCCCc-eEEecccccceeeecccC-ceEE---EEeeCCccceEEEEeccccc-eeEeccCCceEEEEEeccc-eeeee
Confidence 9999998 999999999999999985 4444 78999999999999999999 9999999999999999998 89999
Q ss_pred eecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 316 FKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 316 ~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
+.+|.+.|..++|-.+++.++.+.+ ++.+++|++.+++
T Consensus 543 ~eGH~~aVlra~F~~~~~qliS~~a----dGliKlWnikt~e 580 (775)
T KOG0319|consen 543 FEGHTSAVLRASFIRNGKQLISAGA----DGLIKLWNIKTNE 580 (775)
T ss_pred ecCccceeEeeeeeeCCcEEEeccC----CCcEEEEeccchh
Confidence 9999999999999999999999887 9999999998875
No 35
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.5e-22 Score=181.64 Aligned_cols=239 Identities=15% Similarity=0.191 Sum_probs=178.9
Q ss_pred hhcccccCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCC
Q 018235 60 LHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSD 139 (359)
Q Consensus 60 ~~~~~~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~ 139 (359)
-|-+-|.-+-|++.|+--....... ..|+++||. +..|.||++--........ .-+.- .
T Consensus 167 HHD~ilpafPLC~ewld~~~~~~~~----gNyvAiGtm-----dp~IeIWDLDI~d~v~P~~------~LGs~----~-- 225 (463)
T KOG0270|consen 167 HHDFILPAFPLCIEWLDHGSKSGGA----GNYVAIGTM-----DPEIEIWDLDIVDAVLPCV------TLGSK----A-- 225 (463)
T ss_pred ecceeccCcchhhhhhhcCCCCCCC----cceEEEecc-----CceeEEeccccccccccce------eechh----h--
Confidence 3445566667899998653222221 259999995 4489999984221110000 00000 0
Q ss_pred CCCCCCcccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCC
Q 018235 140 SDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQ 219 (359)
Q Consensus 140 ~~~d~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (359)
.-.. .+..+.-....+|+..|-.+.|+..-.++||+||.|.+|.+||+.. +
T Consensus 226 ----sk~~----~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~---------------------g 276 (463)
T KOG0270|consen 226 ----SKKK----KKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDT---------------------G 276 (463)
T ss_pred ----hhhh----hhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCC---------------------C
Confidence 0000 0011111223479999999999988889999999999999999998 7
Q ss_pred CCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCC
Q 018235 220 SPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG 299 (359)
Q Consensus 220 ~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg 299 (359)
+|..++..|..+|.+|+|+|..+..|++|+.|+++.|.|.|..+.. .....-.+.|+.+.|.|...+.|.++..||
T Consensus 277 ~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s----~~~wk~~g~VEkv~w~~~se~~f~~~tddG 352 (463)
T KOG0270|consen 277 KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNS----GKEWKFDGEVEKVAWDPHSENSFFVSTDDG 352 (463)
T ss_pred CcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcccc----CceEEeccceEEEEecCCCceeEEEecCCc
Confidence 9999999999999999999999989999999999999999963321 122235678999999999999999999999
Q ss_pred cEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 300 HIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 300 ~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
+|+-+|+|+..+++.++++|.++|.+|++|...+.++.... .+..+++|+...
T Consensus 353 ~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s---~d~~Vklw~~~~ 405 (463)
T KOG0270|consen 353 TVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTAS---TDKVVKLWKFDV 405 (463)
T ss_pred eEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeecc---ccceEEEEeecC
Confidence 99999999988899999999999999999998887665543 399999998653
No 36
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.90 E-value=1e-22 Score=174.62 Aligned_cols=167 Identities=16% Similarity=0.235 Sum_probs=145.8
Q ss_pred EEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCC
Q 018235 160 RKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (359)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp 239 (359)
.+.+|+|.|++++|+|+| ..||||+.|..|.+|+... ..+...++++|.+.|..+.|.+
T Consensus 42 ~l~gh~geI~~~~F~P~g-s~~aSgG~Dr~I~LWnv~g--------------------dceN~~~lkgHsgAVM~l~~~~ 100 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDG-SCFASGGSDRAIVLWNVYG--------------------DCENFWVLKGHSGAVMELHGMR 100 (338)
T ss_pred hcCCCcceEEEEEECCCC-CeEeecCCcceEEEEeccc--------------------cccceeeeccccceeEeeeecc
Confidence 556999999999999988 8999999999999999776 2455678889999999999999
Q ss_pred CCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecC
Q 018235 240 ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAH 319 (359)
Q Consensus 240 ~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h 319 (359)
++. .|+|++.|.+|+.||.++ ++.. +.+.+|..-|+.++-+..|..++.|++.||+++|||+|+. .+++++. .
T Consensus 101 d~s-~i~S~gtDk~v~~wD~~t-G~~~---rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k-~~~~t~~-~ 173 (338)
T KOG0265|consen 101 DGS-HILSCGTDKTVRGWDAET-GKRI---RKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKK-EAIKTFE-N 173 (338)
T ss_pred CCC-EEEEecCCceEEEEeccc-ceee---ehhccccceeeecCccccCCeEEEecCCCceEEEEeeccc-chhhccc-c
Confidence 998 999999999999999998 5554 6789999999999977778889999999999999999986 6665553 4
Q ss_pred CCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 320 NADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 320 ~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
...++++.|+..+..++.+.- |+.|++||++.+.+
T Consensus 174 kyqltAv~f~d~s~qv~sggI----dn~ikvWd~r~~d~ 208 (338)
T KOG0265|consen 174 KYQLTAVGFKDTSDQVISGGI----DNDIKVWDLRKNDG 208 (338)
T ss_pred ceeEEEEEecccccceeeccc----cCceeeeccccCcc
Confidence 556999999999988888776 88899999987654
No 37
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.89 E-value=7.4e-23 Score=178.55 Aligned_cols=225 Identities=18% Similarity=0.261 Sum_probs=178.1
Q ss_pred eeChhHhhhhhcccccCcceeEEEEeccCCCCcccCCceEEEEEe---ecCCCCCCceEEEEEeeccCCcccCCCCCCCC
Q 018235 51 QCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAG---TQAEKPSWNSIGVFKVSNISGKRRELVPNKPS 127 (359)
Q Consensus 51 ~~~~~~Y~~~~~~~~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~G---T~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~ 127 (359)
..=|.+|.-+++..-.|-|=-+-.-+-.- ++...-..|++-- .--++..+|.|.||+..
T Consensus 164 ~l~pki~~di~~idsNWr~Gr~~~~rinc---~Se~skgVYClQYDD~kiVSGlrDnTikiWD~n--------------- 225 (499)
T KOG0281|consen 164 LLYPKIIQDIETIESNWRCGRHLLQRINC---RSENSKGVYCLQYDDEKIVSGLRDNTIKIWDKN--------------- 225 (499)
T ss_pred hhhHHHHHHHhhhhcchhccceeeeeecC---CcccCCceEEEEecchhhhcccccCceEEeccc---------------
Confidence 33468899999999999886555443321 2222223444321 11234478899999773
Q ss_pred CCCCCCCCCCCCCCCCCCcccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccc
Q 018235 128 NDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESET 207 (359)
Q Consensus 128 ~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~ 207 (359)
.-.+...+.+|+|.|.|+.|.. .++++|+.|.+|+|||...
T Consensus 226 --------------------------~~~c~~~L~GHtGSVLCLqyd~---rviisGSSDsTvrvWDv~t---------- 266 (499)
T KOG0281|consen 226 --------------------------SLECLKILTGHTGSVLCLQYDE---RVIVSGSSDSTVRVWDVNT---------- 266 (499)
T ss_pred --------------------------cHHHHHhhhcCCCcEEeeeccc---eEEEecCCCceEEEEeccC----------
Confidence 3334467789999999999975 6999999999999999998
Q ss_pred cccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCC
Q 018235 208 IVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPT 287 (359)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~ 287 (359)
++|+.++.+|...|..+.|+. |+++|++.|.+|.+||+..+.. ....+.+.||.+.|+.|+|+.
T Consensus 267 -----------ge~l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~-it~rrVLvGHrAaVNvVdfd~- 330 (499)
T KOG0281|consen 267 -----------GEPLNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTD-ITLRRVLVGHRAAVNVVDFDD- 330 (499)
T ss_pred -----------CchhhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchH-HHHHHHHhhhhhheeeecccc-
Confidence 899999999999999999975 5999999999999999987442 222366889999999999964
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 288 EPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 288 ~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
+ +++++|.|++|++|++.+. ..+.++.+|.-.|-|+.++ +++++.+.. |++|++||+..|.
T Consensus 331 -k-yIVsASgDRTikvW~~st~-efvRtl~gHkRGIAClQYr--~rlvVSGSS----DntIRlwdi~~G~ 391 (499)
T KOG0281|consen 331 -K-YIVSASGDRTIKVWSTSTC-EFVRTLNGHKRGIACLQYR--DRLVVSGSS----DNTIRLWDIECGA 391 (499)
T ss_pred -c-eEEEecCCceEEEEeccce-eeehhhhcccccceehhcc--CeEEEecCC----CceEEEEeccccH
Confidence 4 9999999999999999998 8889999999999998876 788887766 9999999998875
No 38
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.89 E-value=4e-22 Score=188.86 Aligned_cols=239 Identities=19% Similarity=0.317 Sum_probs=186.4
Q ss_pred CCCeeeeCCcccCCCCceeeeChhHhhhhhcccccCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEe
Q 018235 32 LPTKVWQPGVDKLEEGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKV 111 (359)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~l~~~~~~Y~~~~~~~~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~ 111 (359)
...++|...+- .++-++..+ =.|..-++|.. .|+|+|+ ..+.|.|+++
T Consensus 394 ~SikiWn~~t~---------------kciRTi~~~-y~l~~~Fvpgd-----------~~Iv~G~-----k~Gel~vfdl 441 (888)
T KOG0306|consen 394 ESIKIWNRDTL---------------KCIRTITCG-YILASKFVPGD-----------RYIVLGT-----KNGELQVFDL 441 (888)
T ss_pred CcEEEEEccCc---------------ceeEEeccc-cEEEEEecCCC-----------ceEEEec-----cCCceEEEEe
Confidence 44678877655 556666555 34667777764 6999999 4568999998
Q ss_pred eccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEE
Q 018235 112 SNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQ 191 (359)
Q Consensus 112 ~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~ 191 (359)
. ...+.-...+|.|.|+.+...|++ ..++|||.|.+|+
T Consensus 442 a-----------------------------------------S~~l~Eti~AHdgaIWsi~~~pD~-~g~vT~saDktVk 479 (888)
T KOG0306|consen 442 A-----------------------------------------SASLVETIRAHDGAIWSISLSPDN-KGFVTGSADKTVK 479 (888)
T ss_pred e-----------------------------------------hhhhhhhhhccccceeeeeecCCC-CceEEecCCcEEE
Confidence 4 112223344899999999999999 7899999999999
Q ss_pred EEECCCCcccccccc------------------ccccCC-----------CCCC-----CCCCCcEEecCCCCceEEEEe
Q 018235 192 VWDLRSHLNALAESE------------------TIVGQG-----------APQV-----SNQSPLVKFGGHKDEGYAIDW 237 (359)
Q Consensus 192 iwd~~~~~~~~~~~~------------------~~~~~~-----------~~~~-----~~~~~~~~~~~h~~~v~~l~~ 237 (359)
+||+..... ..+.. ...... ..++ ...+...++.||.-+|.+|+.
T Consensus 480 fWdf~l~~~-~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDI 558 (888)
T KOG0306|consen 480 FWDFKLVVS-VPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDI 558 (888)
T ss_pred EEeEEEEec-cCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEec
Confidence 999754211 00000 000000 1111 334555678899999999999
Q ss_pred CCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEee
Q 018235 238 NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK 317 (359)
Q Consensus 238 sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~ 317 (359)
||++. +++|||.|.+|++|-+.- +.+. +.|.+|..+|.+|+|.|... +|.||+.|+.|+-||-... ..++.+.
T Consensus 559 S~DSk-livTgSADKnVKiWGLdF-GDCH---KS~fAHdDSvm~V~F~P~~~-~FFt~gKD~kvKqWDg~kF-e~iq~L~ 631 (888)
T KOG0306|consen 559 SPDSK-LIVTGSADKNVKIWGLDF-GDCH---KSFFAHDDSVMSVQFLPKTH-LFFTCGKDGKVKQWDGEKF-EEIQKLD 631 (888)
T ss_pred cCCcC-eEEeccCCCceEEecccc-chhh---hhhhcccCceeEEEEcccce-eEEEecCcceEEeechhhh-hhheeec
Confidence 99999 999999999999999876 5554 68899999999999999766 9999999999999999988 7899999
Q ss_pred cCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 318 AHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 318 ~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
+|...|+|++.+|+|.+++.+.. |..|++|.-...
T Consensus 632 ~H~~ev~cLav~~~G~~vvs~sh----D~sIRlwE~tde 666 (888)
T KOG0306|consen 632 GHHSEVWCLAVSPNGSFVVSSSH----DKSIRLWERTDE 666 (888)
T ss_pred cchheeeeeEEcCCCCeEEeccC----CceeEeeeccCc
Confidence 99999999999999999998877 999999986543
No 39
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.89 E-value=2.1e-22 Score=190.47 Aligned_cols=164 Identities=16% Similarity=0.253 Sum_probs=150.6
Q ss_pred EEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCC
Q 018235 160 RKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (359)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp 239 (359)
....|...||+++++|.. .+|||||.|.+.+||++.. ...+.++.||+..++++.|+|
T Consensus 458 t~~aHdKdIN~Vaia~nd-kLiAT~SqDktaKiW~le~---------------------~~l~~vLsGH~RGvw~V~Fs~ 515 (775)
T KOG0319|consen 458 TERAHDKDINCVAIAPND-KLIATGSQDKTAKIWDLEQ---------------------LRLLGVLSGHTRGVWCVSFSK 515 (775)
T ss_pred HHHhhcccccceEecCCC-ceEEecccccceeeecccC---------------------ceEEEEeeCCccceEEEEecc
Confidence 556799999999999998 8999999999999999986 577889999999999999999
Q ss_pred CCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecC
Q 018235 240 ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAH 319 (359)
Q Consensus 240 ~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h 319 (359)
... .++|+|.|++|+||.+.+ ..++ .+|.||+..|..++|-.++. .|+||+.||.|+||++.+. .|+.++.+|
T Consensus 516 ~dq-~laT~SgD~TvKIW~is~-fSCl---kT~eGH~~aVlra~F~~~~~-qliS~~adGliKlWnikt~-eC~~tlD~H 588 (775)
T KOG0319|consen 516 NDQ-LLATCSGDKTVKIWSIST-FSCL---KTFEGHTSAVLRASFIRNGK-QLISAGADGLIKLWNIKTN-ECEMTLDAH 588 (775)
T ss_pred ccc-eeEeccCCceEEEEEecc-ceee---eeecCccceeEeeeeeeCCc-EEEeccCCCcEEEEeccch-hhhhhhhhc
Confidence 998 999999999999999988 4444 78999999999999999999 9999999999999999998 899999999
Q ss_pred CCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 320 NADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 320 ~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
+..|+.++-++....++.+.. |+.|.+|.-.+.
T Consensus 589 ~DrvWaL~~~~~~~~~~tgg~----Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 589 NDRVWALSVSPLLDMFVTGGG----DGRIIFWKDVTE 621 (775)
T ss_pred cceeEEEeecCccceeEecCC----CeEEEEeecCcH
Confidence 999999999999998877766 899999975543
No 40
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=1.4e-21 Score=171.59 Aligned_cols=169 Identities=19% Similarity=0.324 Sum_probs=151.6
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceE
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (359)
......++.+|..-|..++.+.+| .++|+++.|.+|++|-+.. ..+...+..|..++.
T Consensus 224 tg~cv~t~~~h~ewvr~v~v~~DG-ti~As~s~dqtl~vW~~~t---------------------~~~k~~lR~hEh~vE 281 (406)
T KOG0295|consen 224 TGYCVKTFPGHSEWVRMVRVNQDG-TIIASCSNDQTLRVWVVAT---------------------KQCKAELREHEHPVE 281 (406)
T ss_pred cceeEEeccCchHhEEEEEecCCe-eEEEecCCCceEEEEEecc---------------------chhhhhhhccccceE
Confidence 556778899999999999999999 8999999999999999987 556677889999999
Q ss_pred EEEeCCCC--------------CCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCC
Q 018235 234 AIDWNPIT--------------TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG 299 (359)
Q Consensus 234 ~l~~sp~~--------------~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg 299 (359)
+++|.|.. ..++++++.|++|++||+.+ +.++ .++.+|...|.+++|+|.|+ +|+||.+|+
T Consensus 282 ci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~t-g~cL---~tL~ghdnwVr~~af~p~Gk-yi~ScaDDk 356 (406)
T KOG0295|consen 282 CIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVST-GMCL---FTLVGHDNWVRGVAFSPGGK-YILSCADDK 356 (406)
T ss_pred EEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccC-CeEE---EEEecccceeeeeEEcCCCe-EEEEEecCC
Confidence 99997742 12899999999999999988 5555 68999999999999999999 999999999
Q ss_pred cEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 300 HIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 300 ~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
++++||+++. +++..+.+|...|+++.|+.+-.+++.+.- +..+++|..+
T Consensus 357 tlrvwdl~~~-~cmk~~~ah~hfvt~lDfh~~~p~VvTGsV----dqt~KvwEcr 406 (406)
T KOG0295|consen 357 TLRVWDLKNL-QCMKTLEAHEHFVTSLDFHKTAPYVVTGSV----DQTVKVWECR 406 (406)
T ss_pred cEEEEEeccc-eeeeccCCCcceeEEEecCCCCceEEeccc----cceeeeeecC
Confidence 9999999998 899999999999999999999998888765 8889999764
No 41
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.2e-21 Score=165.90 Aligned_cols=165 Identities=18% Similarity=0.305 Sum_probs=143.9
Q ss_pred ecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCC
Q 018235 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPIT 241 (359)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~ 241 (359)
-+|+..|.+++|+|.+ ++||++|.|.++.||.-... ..+.+.++.||..+|-+++||+.|
T Consensus 58 ~~hkrsVRsvAwsp~g-~~La~aSFD~t~~Iw~k~~~-------------------efecv~~lEGHEnEVK~Vaws~sG 117 (312)
T KOG0645|consen 58 DGHKRSVRSVAWSPHG-RYLASASFDATVVIWKKEDG-------------------EFECVATLEGHENEVKCVAWSASG 117 (312)
T ss_pred ccchheeeeeeecCCC-cEEEEeeccceEEEeecCCC-------------------ceeEEeeeeccccceeEEEEcCCC
Confidence 3799999999999999 79999999999999976541 246788999999999999999999
Q ss_pred CCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCC--CCceEEeecC
Q 018235 242 TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG--KSALTSFKAH 319 (359)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~--~~~~~~~~~h 319 (359)
. +||+|+.|+.|.||.+......- ....++.|++.|-.+.|||... +|+|||.|.+|++|+-... -.+++++.+|
T Consensus 118 ~-~LATCSRDKSVWiWe~deddEfe-c~aVL~~HtqDVK~V~WHPt~d-lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~ 194 (312)
T KOG0645|consen 118 N-YLATCSRDKSVWIWEIDEDDEFE-CIAVLQEHTQDVKHVIWHPTED-LLFSCSYDNTIKVYRDEDDDDWECVQTLDGH 194 (312)
T ss_pred C-EEEEeeCCCeEEEEEecCCCcEE-EEeeeccccccccEEEEcCCcc-eeEEeccCCeEEEEeecCCCCeeEEEEecCc
Confidence 8 99999999999999998644432 2366889999999999999998 9999999999999987633 1478889999
Q ss_pred CCCEEEEEEcCCCCeEEEEeeecccceEEEEEeC
Q 018235 320 NADVNVISWNRCWLAVCWHLEVMMEHFLFMILDC 353 (359)
Q Consensus 320 ~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~ 353 (359)
...|++++|++.|..++.... |+.++||..
T Consensus 195 ~~TVW~~~F~~~G~rl~s~sd----D~tv~Iw~~ 224 (312)
T KOG0645|consen 195 ENTVWSLAFDNIGSRLVSCSD----DGTVSIWRL 224 (312)
T ss_pred cceEEEEEecCCCceEEEecC----CcceEeeee
Confidence 999999999999988777665 899999973
No 42
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.89 E-value=2.4e-21 Score=170.15 Aligned_cols=168 Identities=15% Similarity=0.221 Sum_probs=149.2
Q ss_pred EEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEe
Q 018235 158 QLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (359)
Q Consensus 158 ~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (359)
...+..|++.|.++..+|+. +++|||+.|..-+||++.. +.....+.+|...|.++.|
T Consensus 57 ~~tF~~H~~svFavsl~P~~-~l~aTGGgDD~AflW~~~~---------------------ge~~~eltgHKDSVt~~~F 114 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNN-NLVATGGGDDLAFLWDIST---------------------GEFAGELTGHKDSVTCCSF 114 (399)
T ss_pred eeehhhcCCceEEEEeCCCC-ceEEecCCCceEEEEEccC---------------------CcceeEecCCCCceEEEEE
Confidence 36778999999999999955 8999999999999999998 5677899999999999999
Q ss_pred CCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEee
Q 018235 238 NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK 317 (359)
Q Consensus 238 sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~ 317 (359)
|.++. +||||+.+|.|+||...++... .++..--..+.-+.|||... +|++|+.||.|-+|.+.+. ...+.+.
T Consensus 115 shdgt-lLATGdmsG~v~v~~~stg~~~----~~~~~e~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~-~~~kv~~ 187 (399)
T KOG0296|consen 115 SHDGT-LLATGDMSGKVLVFKVSTGGEQ----WKLDQEVEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQ-ALCKVMS 187 (399)
T ss_pred ccCce-EEEecCCCccEEEEEcccCceE----EEeecccCceEEEEeccccc-EEEeecCCCcEEEEECCCc-ceeeEec
Confidence 99998 9999999999999999874332 34444567888999999887 9999999999999999986 5667789
Q ss_pred cCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 318 AHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 318 ~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
+|++++++-.|.|+|+.++.+.. +++|++|++.+|..
T Consensus 188 Gh~~~ct~G~f~pdGKr~~tgy~----dgti~~Wn~ktg~p 224 (399)
T KOG0296|consen 188 GHNSPCTCGEFIPDGKRILTGYD----DGTIIVWNPKTGQP 224 (399)
T ss_pred CCCCCcccccccCCCceEEEEec----CceEEEEecCCCce
Confidence 99999999999999999999987 99999999998853
No 43
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.6e-21 Score=181.39 Aligned_cols=173 Identities=17% Similarity=0.275 Sum_probs=153.1
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceE
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (359)
+..+...+.--.-+|.+.+|.+.. +.+++|++|..|+||++.+ ...+..|..|.+.|.
T Consensus 44 tqtmVksfeV~~~PvRa~kfiaRk-nWiv~GsDD~~IrVfnynt---------------------~ekV~~FeAH~DyIR 101 (794)
T KOG0276|consen 44 TQTMVKSFEVSEVPVRAAKFIARK-NWIVTGSDDMQIRVFNYNT---------------------GEKVKTFEAHSDYIR 101 (794)
T ss_pred cceeeeeeeecccchhhheeeecc-ceEEEecCCceEEEEeccc---------------------ceeeEEeecccccee
Confidence 445555555566789999998877 8999999999999999998 678899999999999
Q ss_pred EEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCce
Q 018235 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL 313 (359)
Q Consensus 234 ~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~ 313 (359)
+|+.+|..+ +++|+|.|-+|++||....-.+ .++|.||+.-|.+|+|+|..++.|||||-|++|+||.+.+. .+.
T Consensus 102 ~iavHPt~P-~vLtsSDDm~iKlW~we~~wa~---~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~-~~n 176 (794)
T KOG0276|consen 102 SIAVHPTLP-YVLTSSDDMTIKLWDWENEWAC---EQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSP-HPN 176 (794)
T ss_pred eeeecCCCC-eEEecCCccEEEEeeccCceee---eeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCC-CCc
Confidence 999999999 9999999999999999754333 37899999999999999999999999999999999999987 889
Q ss_pred EEeecCCCCEEEEEEcCCC--CeEEEEeeecccceEEEEEeCcCCc
Q 018235 314 TSFKAHNADVNVISWNRCW--LAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 314 ~~~~~h~~~V~~i~~s~~~--~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
.++.+|...|||+.|-+-| ++++.+.. |.++++||..+..
T Consensus 177 fTl~gHekGVN~Vdyy~~gdkpylIsgaD----D~tiKvWDyQtk~ 218 (794)
T KOG0276|consen 177 FTLEGHEKGVNCVDYYTGGDKPYLISGAD----DLTIKVWDYQTKS 218 (794)
T ss_pred eeeeccccCcceEEeccCCCcceEEecCC----CceEEEeecchHH
Confidence 9999999999999998755 68888876 9999999987643
No 44
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=8.6e-23 Score=193.91 Aligned_cols=166 Identities=20% Similarity=0.371 Sum_probs=146.8
Q ss_pred CceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeE
Q 018235 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRL 245 (359)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l 245 (359)
-.++.|.|.....++|||++..|.|.+||+.... ..+.+..|..|...++.++|++..+.+|
T Consensus 88 ~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~------------------rnk~l~~f~EH~Rs~~~ldfh~tep~il 149 (839)
T KOG0269|consen 88 YSAADVKWGQLYSNLIATCSTNGVISVWDLNKSI------------------RNKLLTVFNEHERSANKLDFHSTEPNIL 149 (839)
T ss_pred eehhhcccccchhhhheeecCCCcEEEEecCccc------------------cchhhhHhhhhccceeeeeeccCCccEE
Confidence 4677788886557899999999999999998732 2355678999999999999999999999
Q ss_pred EEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEE
Q 018235 246 VTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNV 325 (359)
Q Consensus 246 ~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~ 325 (359)
+||+.||+|++||+|.... . .++.+...+|.+|+|+|...+.|+++.+.|.+++||+|...++...+.+|.++|.|
T Consensus 150 iSGSQDg~vK~~DlR~~~S-~---~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c 225 (839)
T KOG0269|consen 150 ISGSQDGTVKCWDLRSKKS-K---STFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLC 225 (839)
T ss_pred EecCCCceEEEEeeecccc-c---ccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEE
Confidence 9999999999999998433 2 56778889999999999999899999999999999999987788889999999999
Q ss_pred EEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 326 ISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 326 i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
+.|+|++.+|+++.+ |+.++||+...+.
T Consensus 226 ~nwhPnr~~lATGGR----DK~vkiWd~t~~~ 253 (839)
T KOG0269|consen 226 LNWHPNREWLATGGR----DKMVKIWDMTDSR 253 (839)
T ss_pred EeecCCCceeeecCC----CccEEEEeccCCC
Confidence 999999999998887 9999999987543
No 45
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.88 E-value=9.8e-22 Score=193.28 Aligned_cols=230 Identities=20% Similarity=0.281 Sum_probs=176.0
Q ss_pred ceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 018235 69 CLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDE 148 (359)
Q Consensus 69 ~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~~ 148 (359)
-+|+|+-||. ..+..|.|-. +..+.||....+..... +.++
T Consensus 16 IfSIdv~pdg-----------~~~aTgGq~~---d~~~~iW~~~~vl~~~~-------------------------~~~~ 56 (942)
T KOG0973|consen 16 IFSIDVHPDG-----------VKFATGGQVL---DGGIVIWSQDPVLDEKE-------------------------EKNE 56 (942)
T ss_pred EEEEEecCCc-----------eeEecCCccc---cccceeeccccccchhh-------------------------hhhc
Confidence 5799999985 5788888765 33455898753321111 1111
Q ss_pred CCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCC-ccccccccccccCCCCCCCCCCCcEEecC
Q 018235 149 EGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSH-LNALAESETIVGQGAPQVSNQSPLVKFGG 227 (359)
Q Consensus 149 ~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (359)
.-|.+..+...|.++|+|++|+|+| .+||+|++|+.|.||..... ..... ...++...+...+.+.++.+
T Consensus 57 ----~l~k~l~~m~~h~~sv~CVR~S~dG-~~lAsGSDD~~v~iW~~~~~~~~~~f----gs~g~~~~vE~wk~~~~l~~ 127 (942)
T KOG0973|consen 57 ----NLPKHLCTMDDHDGSVNCVRFSPDG-SYLASGSDDRLVMIWERAEIGSGTVF----GSTGGAKNVESWKVVSILRG 127 (942)
T ss_pred ----ccchhheeeccccCceeEEEECCCC-CeEeeccCcceEEEeeecccCCcccc----cccccccccceeeEEEEEec
Confidence 1466668888999999999999999 89999999999999998851 00000 01122233346778899999
Q ss_pred CCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECC
Q 018235 228 HKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTR 307 (359)
Q Consensus 228 h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r 307 (359)
|...|..++|+|++. +|+|++.|++|.||+.++. ..+ ..+.+|.+.|-.+.|.|.|+ +||+-+.|++|+||++.
T Consensus 128 H~~DV~Dv~Wsp~~~-~lvS~s~DnsViiwn~~tF-~~~---~vl~~H~s~VKGvs~DP~Gk-y~ASqsdDrtikvwrt~ 201 (942)
T KOG0973|consen 128 HDSDVLDVNWSPDDS-LLVSVSLDNSVIIWNAKTF-ELL---KVLRGHQSLVKGVSWDPIGK-YFASQSDDRTLKVWRTS 201 (942)
T ss_pred CCCccceeccCCCcc-EEEEecccceEEEEccccc-eee---eeeecccccccceEECCccC-eeeeecCCceEEEEEcc
Confidence 999999999999998 9999999999999999986 444 78999999999999999999 99999999999999977
Q ss_pred CCCCceEEeecC------CCCEEEEEEcCCCCeEEEEeeecccceEEEEEeC
Q 018235 308 VGKSALTSFKAH------NADVNVISWNRCWLAVCWHLEVMMEHFLFMILDC 353 (359)
Q Consensus 308 ~~~~~~~~~~~h------~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~ 353 (359)
.- ...+.+..+ ...+..++|+|+|.+|+...+..+...++.|.+-
T Consensus 202 dw-~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR 252 (942)
T KOG0973|consen 202 DW-GIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIER 252 (942)
T ss_pred cc-eeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEec
Confidence 64 444454332 3457899999999999987766555666777654
No 46
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=3.5e-22 Score=189.80 Aligned_cols=172 Identities=19% Similarity=0.303 Sum_probs=149.0
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
..+-.|...|+++.|++..+++|+||+.||+|++||++. .+...++.+....|..+.|+
T Consensus 127 ~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~---------------------~~S~~t~~~nSESiRDV~fs 185 (839)
T KOG0269|consen 127 TVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRS---------------------KKSKSTFRSNSESIRDVKFS 185 (839)
T ss_pred hHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeec---------------------ccccccccccchhhhceeec
Confidence 455679999999999999999999999999999999998 45566777888899999999
Q ss_pred CCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCC-CCceEEee
Q 018235 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG-KSALTSFK 317 (359)
Q Consensus 239 p~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~-~~~~~~~~ 317 (359)
|.....|+++...|.+.+||+|....+. ..+.+|.++|.++.|+|++. +||||+.|+.|+|||.... ..++.++.
T Consensus 186 p~~~~~F~s~~dsG~lqlWDlRqp~r~~---~k~~AH~GpV~c~nwhPnr~-~lATGGRDK~vkiWd~t~~~~~~~~tIn 261 (839)
T KOG0269|consen 186 PGYGNKFASIHDSGYLQLWDLRQPDRCE---KKLTAHNGPVLCLNWHPNRE-WLATGGRDKMVKIWDMTDSRAKPKHTIN 261 (839)
T ss_pred cCCCceEEEecCCceEEEeeccCchhHH---HHhhcccCceEEEeecCCCc-eeeecCCCccEEEEeccCCCccceeEEe
Confidence 9888899999999999999999977776 67899999999999999777 9999999999999999865 23455554
Q ss_pred cCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 318 AHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 318 ~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
..++|.++.|-|..++.+..+. +..+..|.+||+++--
T Consensus 262 -Tiapv~rVkWRP~~~~hLAtcs-mv~dtsV~VWDvrRPY 299 (839)
T KOG0269|consen 262 -TIAPVGRVKWRPARSYHLATCS-MVVDTSVHVWDVRRPY 299 (839)
T ss_pred -ecceeeeeeeccCccchhhhhh-ccccceEEEEeecccc
Confidence 4678999999999998877664 4558899999998753
No 47
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.88 E-value=2.8e-20 Score=165.80 Aligned_cols=202 Identities=21% Similarity=0.324 Sum_probs=166.8
Q ss_pred cCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018235 66 GWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSD 145 (359)
Q Consensus 66 ~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~ 145 (359)
.-|..++.|.|+. .++++|+ .++.|.|+++.
T Consensus 9 ~~~i~~~~~~~~~-----------~~l~~~~-----~~g~i~i~~~~--------------------------------- 39 (289)
T cd00200 9 TGGVTCVAFSPDG-----------KLLATGS-----GDGTIKVWDLE--------------------------------- 39 (289)
T ss_pred CCCEEEEEEcCCC-----------CEEEEee-----cCcEEEEEEee---------------------------------
Confidence 3577889998874 4677776 36789999883
Q ss_pred cccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEe
Q 018235 146 DDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF 225 (359)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (359)
..........|...+..+.|+|++ ..+++++.+|.|++|++.. ...+..+
T Consensus 40 --------~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~~~~~---------------------~~~~~~~ 89 (289)
T cd00200 40 --------TGELLRTLKGHTGPVRDVAASADG-TYLASGSSDKTIRLWDLET---------------------GECVRTL 89 (289)
T ss_pred --------CCCcEEEEecCCcceeEEEECCCC-CEEEEEcCCCeEEEEEcCc---------------------ccceEEE
Confidence 111334556899999999999998 7899999999999999987 4566778
Q ss_pred cCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEE
Q 018235 226 GGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWD 305 (359)
Q Consensus 226 ~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD 305 (359)
..|...+.++.|++.+. ++++++.+|.|++|++++ .... ..+..|...|.+++|+|++. ++++++.++.|++||
T Consensus 90 ~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~-~~~~---~~~~~~~~~i~~~~~~~~~~-~l~~~~~~~~i~i~d 163 (289)
T cd00200 90 TGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDVET-GKCL---TTLRGHTDWVNSVAFSPDGT-FVASSSQDGTIKLWD 163 (289)
T ss_pred eccCCcEEEEEEcCCCC-EEEEecCCCeEEEEECCC-cEEE---EEeccCCCcEEEEEEcCcCC-EEEEEcCCCcEEEEE
Confidence 88998999999999976 888888899999999986 3333 45668999999999999977 888888899999999
Q ss_pred CCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 306 TRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 306 ~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
++.. .++..+..|...|.+++|+|++..++.+.. ++.+++|+.+.+.
T Consensus 164 ~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----~~~i~i~d~~~~~ 210 (289)
T cd00200 164 LRTG-KCVATLTGHTGEVNSVAFSPDGEKLLSSSS----DGTIKLWDLSTGK 210 (289)
T ss_pred cccc-ccceeEecCccccceEEECCCcCEEEEecC----CCcEEEEECCCCc
Confidence 9976 677778889989999999999988887765 7889999988654
No 48
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.88 E-value=6.2e-23 Score=185.79 Aligned_cols=170 Identities=17% Similarity=0.268 Sum_probs=151.3
Q ss_pred eEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEE
Q 018235 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAI 235 (359)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 235 (359)
.+.+.+.+|+..|++++|.|...++|++|+.|+.|+||++.. ...++.+|.||..+|.++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~--------------------~~~~lrtf~gH~k~Vrd~ 264 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD--------------------DRRCLRTFKGHRKPVRDA 264 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEec--------------------Ccceehhhhcchhhhhhh
Confidence 355778899999999999994449999999999999999987 478899999999999999
Q ss_pred EeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEE
Q 018235 236 DWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS 315 (359)
Q Consensus 236 ~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~ 315 (359)
+|+..+. .|+|++.|+.|++||+.+ ++.. ..|. -...++|+.|+|++.++|++|+.|+.|+.||+|++ +.++.
T Consensus 265 ~~s~~g~-~fLS~sfD~~lKlwDtET-G~~~---~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~-kvvqe 337 (503)
T KOG0282|consen 265 SFNNCGT-SFLSASFDRFLKLWDTET-GQVL---SRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG-KVVQE 337 (503)
T ss_pred hccccCC-eeeeeecceeeeeecccc-ceEE---EEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccch-HHHHH
Confidence 9999998 999999999999999988 5544 2332 23567999999999889999999999999999998 78888
Q ss_pred eecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 316 FKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 316 ~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
+..|-+.|+.|.|-++|..++.+.. +..++||+.+.+
T Consensus 338 Yd~hLg~i~~i~F~~~g~rFissSD----dks~riWe~~~~ 374 (503)
T KOG0282|consen 338 YDRHLGAILDITFVDEGRRFISSSD----DKSVRIWENRIP 374 (503)
T ss_pred HHhhhhheeeeEEccCCceEeeecc----CccEEEEEcCCC
Confidence 8999999999999999999998877 889999997764
No 49
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=7.8e-22 Score=189.50 Aligned_cols=181 Identities=17% Similarity=0.321 Sum_probs=142.1
Q ss_pred cCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCcc------c-------------c-----cc-----cccccc---
Q 018235 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLN------A-------------L-----AE-----SETIVG--- 210 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~------~-------------~-----~~-----~~~~~~--- 210 (359)
+|.|.|+++.|+++| .++|+|+.||.|+||.+..... . . .. ......
T Consensus 265 ah~gaIw~mKFS~DG-KyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDG-KYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred ccCCcEEEEEeCCCC-ceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence 799999999999999 8999999999999998765110 0 0 00 000000
Q ss_pred CCCC-------CCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEE
Q 018235 211 QGAP-------QVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQ 283 (359)
Q Consensus 211 ~~~~-------~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~ 283 (359)
.... .....+|++.|.||.+.|..|+||..+ +|+|++.|.+|+||.+.. ..++ ..| .|..-|+||+
T Consensus 344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~-~~CL---~~F-~HndfVTcVa 416 (712)
T KOG0283|consen 344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGR-KECL---KVF-SHNDFVTCVA 416 (712)
T ss_pred CCccccCCCccccccccchhhhhccchhheecccccCC--eeEeccccccEEeecCCC-ccee---eEE-ecCCeeEEEE
Confidence 0000 013467889999999999999999875 899999999999999976 4444 444 5999999999
Q ss_pred ecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 284 WSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 284 ~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
|+|....+|++||-||.||||++-.. .+........-|++++|.|+|++.+.++- ++.+++++++...
T Consensus 417 FnPvDDryFiSGSLD~KvRiWsI~d~--~Vv~W~Dl~~lITAvcy~PdGk~avIGt~----~G~C~fY~t~~lk 484 (712)
T KOG0283|consen 417 FNPVDDRYFISGSLDGKVRLWSISDK--KVVDWNDLRDLITAVCYSPDGKGAVIGTF----NGYCRFYDTEGLK 484 (712)
T ss_pred ecccCCCcEeecccccceEEeecCcC--eeEeehhhhhhheeEEeccCCceEEEEEe----ccEEEEEEccCCe
Confidence 99998889999999999999999874 45455444577999999999999999876 7788888876543
No 50
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=3.1e-21 Score=169.31 Aligned_cols=167 Identities=17% Similarity=0.254 Sum_probs=151.4
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
...++|.-.|.++.|.|.| ..|++++.|.+|+.|++.. +.++.+|.+|...+.-++.+
T Consensus 187 ks~~gh~h~vS~V~f~P~g-d~ilS~srD~tik~We~~t---------------------g~cv~t~~~h~ewvr~v~v~ 244 (406)
T KOG0295|consen 187 KSLIGHEHGVSSVFFLPLG-DHILSCSRDNTIKAWECDT---------------------GYCVKTFPGHSEWVRMVRVN 244 (406)
T ss_pred HHhcCcccceeeEEEEecC-CeeeecccccceeEEeccc---------------------ceeEEeccCchHhEEEEEec
Confidence 4556899999999999999 8999999999999999998 78899999999999999999
Q ss_pred CCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCC--------------CCEEEEEeCCCcEEEE
Q 018235 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTE--------------PDVFASCSVDGHIAIW 304 (359)
Q Consensus 239 p~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~--------------~~~las~s~Dg~I~iw 304 (359)
.+|. ++|||+.|.++++|-+.+ ..+. ..+..|..+|++++|-|.. ..++++++.|++|++|
T Consensus 245 ~DGt-i~As~s~dqtl~vW~~~t-~~~k---~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~w 319 (406)
T KOG0295|consen 245 QDGT-IIASCSNDQTLRVWVVAT-KQCK---AELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIW 319 (406)
T ss_pred CCee-EEEecCCCceEEEEEecc-chhh---hhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEE
Confidence 9998 999999999999999877 4443 5688999999999997641 2389999999999999
Q ss_pred ECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 305 DTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 305 D~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
|+.++ .++.++.+|...|..++|+|.|++|+.... |+++++||.+++.
T Consensus 320 dv~tg-~cL~tL~ghdnwVr~~af~p~Gkyi~ScaD----Dktlrvwdl~~~~ 367 (406)
T KOG0295|consen 320 DVSTG-MCLFTLVGHDNWVRGVAFSPGGKYILSCAD----DKTLRVWDLKNLQ 367 (406)
T ss_pred eccCC-eEEEEEecccceeeeeEEcCCCeEEEEEec----CCcEEEEEeccce
Confidence 99998 899999999999999999999999998776 9999999998764
No 51
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.88 E-value=7.2e-21 Score=163.32 Aligned_cols=161 Identities=17% Similarity=0.261 Sum_probs=142.2
Q ss_pred ecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCC
Q 018235 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPIT 241 (359)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~ 241 (359)
.+|.+.|..+.|++++ ..+++++.|.+|+.||... ++.++.+++|..-+++++-+..+
T Consensus 87 kgHsgAVM~l~~~~d~-s~i~S~gtDk~v~~wD~~t---------------------G~~~rk~k~h~~~vNs~~p~rrg 144 (338)
T KOG0265|consen 87 KGHSGAVMELHGMRDG-SHILSCGTDKTVRGWDAET---------------------GKRIRKHKGHTSFVNSLDPSRRG 144 (338)
T ss_pred ccccceeEeeeeccCC-CEEEEecCCceEEEEeccc---------------------ceeeehhccccceeeecCccccC
Confidence 3999999999999999 7899999999999999998 78889999999999999977777
Q ss_pred CCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCC
Q 018235 242 TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNA 321 (359)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~ 321 (359)
..++.||+.||+++|||+|+... + +.+ ..+..++++.|.-.+. -+.+|+-|+.|++||+|.. ..+..+.+|..
T Consensus 145 ~~lv~SgsdD~t~kl~D~R~k~~-~---~t~-~~kyqltAv~f~d~s~-qv~sggIdn~ikvWd~r~~-d~~~~lsGh~D 217 (338)
T KOG0265|consen 145 PQLVCSGSDDGTLKLWDIRKKEA-I---KTF-ENKYQLTAVGFKDTSD-QVISGGIDNDIKVWDLRKN-DGLYTLSGHAD 217 (338)
T ss_pred CeEEEecCCCceEEEEeecccch-h---hcc-ccceeEEEEEeccccc-ceeeccccCceeeeccccC-cceEEeecccC
Confidence 77899999999999999997332 2 233 3467899999998888 8889999999999999987 78888999999
Q ss_pred CEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 322 DVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 322 ~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
.|+.|+.+|+|.+++...- ++++++||.+.
T Consensus 218 tIt~lsls~~gs~llsnsM----d~tvrvwd~rp 247 (338)
T KOG0265|consen 218 TITGLSLSRYGSFLLSNSM----DNTVRVWDVRP 247 (338)
T ss_pred ceeeEEeccCCCccccccc----cceEEEEEecc
Confidence 9999999999999887654 88999999764
No 52
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=2.3e-21 Score=175.90 Aligned_cols=171 Identities=22% Similarity=0.282 Sum_probs=144.9
Q ss_pred eEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEE
Q 018235 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAI 235 (359)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 235 (359)
.+...+.+|+.+|+.+.|+|++..++++|++|+.+++||+.. ...+..+.+|++.|.+.
T Consensus 101 ~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~---------------------a~v~~~l~~htDYVR~g 159 (487)
T KOG0310|consen 101 VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLST---------------------AYVQAELSGHTDYVRCG 159 (487)
T ss_pred HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCC---------------------cEEEEEecCCcceeEee
Confidence 344677899999999999999989999999999999999998 23356889999999999
Q ss_pred EeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEE
Q 018235 236 DWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS 315 (359)
Q Consensus 236 ~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~ 315 (359)
+|+|....+++||+.||.|++||++....++ ..+ .|..+|+.+.+-|.|. +||+|+. ..|++||+-++.+.+..
T Consensus 160 ~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v---~el-nhg~pVe~vl~lpsgs-~iasAgG-n~vkVWDl~~G~qll~~ 233 (487)
T KOG0310|consen 160 DISPANDHIVVTGSYDGKVRLWDTRSLTSRV---VEL-NHGCPVESVLALPSGS-LIASAGG-NSVKVWDLTTGGQLLTS 233 (487)
T ss_pred ccccCCCeEEEecCCCceEEEEEeccCCcee---EEe-cCCCceeeEEEcCCCC-EEEEcCC-CeEEEEEecCCceehhh
Confidence 9999988799999999999999999854544 333 5999999999999998 9998876 47999999987455555
Q ss_pred eecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 316 FKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 316 ~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
+..|...|+|+.+..++..|+.+.- |+.+++++..+-+
T Consensus 234 ~~~H~KtVTcL~l~s~~~rLlS~sL----D~~VKVfd~t~~K 271 (487)
T KOG0310|consen 234 MFNHNKTVTCLRLASDSTRLLSGSL----DRHVKVFDTTNYK 271 (487)
T ss_pred hhcccceEEEEEeecCCceEeeccc----ccceEEEEccceE
Confidence 5559999999999999988877654 8899999965543
No 53
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.87 E-value=7.8e-20 Score=162.97 Aligned_cols=161 Identities=24% Similarity=0.437 Sum_probs=139.0
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
..+..|.+.|.++.|+|.+ .++++++.+|.|++||+.. .+++..+..|...+.++.|+
T Consensus 129 ~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~---------------------~~~~~~~~~~~~~i~~~~~~ 186 (289)
T cd00200 129 TTLRGHTDWVNSVAFSPDG-TFVASSSQDGTIKLWDLRT---------------------GKCVATLTGHTGEVNSVAFS 186 (289)
T ss_pred EEeccCCCcEEEEEEcCcC-CEEEEEcCCCcEEEEEccc---------------------cccceeEecCccccceEEEC
Confidence 4445799999999999987 7888888899999999986 46677788898899999999
Q ss_pred CCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeec
Q 018235 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA 318 (359)
Q Consensus 239 p~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~ 318 (359)
|++. .|++++.++.|++||++. +... ..+..|...+.+++|+|++. ++++++.+|.|++||++++ ..+..+..
T Consensus 187 ~~~~-~l~~~~~~~~i~i~d~~~-~~~~---~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~i~~~~~~-~~~~~~~~ 259 (289)
T cd00200 187 PDGE-KLLSSSSDGTIKLWDLST-GKCL---GTLRGHENGVNSVAFSPDGY-LLASGSEDGTIRVWDLRTG-ECVQTLSG 259 (289)
T ss_pred CCcC-EEEEecCCCcEEEEECCC-Ccee---cchhhcCCceEEEEEcCCCc-EEEEEcCCCcEEEEEcCCc-eeEEEccc
Confidence 9997 888888899999999986 4433 45667888999999999966 8888888999999999986 67777788
Q ss_pred CCCCEEEEEEcCCCCeEEEEeeecccceEEEEEe
Q 018235 319 HNADVNVISWNRCWLAVCWHLEVMMEHFLFMILD 352 (359)
Q Consensus 319 h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd 352 (359)
|...|.+++|++++.+++.+.. ++.+++|+
T Consensus 260 ~~~~i~~~~~~~~~~~l~~~~~----d~~i~iw~ 289 (289)
T cd00200 260 HTNSVTSLAWSPDGKRLASGSA----DGTIRIWD 289 (289)
T ss_pred cCCcEEEEEECCCCCEEEEecC----CCeEEecC
Confidence 9999999999999998888766 88999995
No 54
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=2.1e-21 Score=186.71 Aligned_cols=170 Identities=19% Similarity=0.263 Sum_probs=150.2
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceE
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (359)
-..++.++-.|.|+|..|.|+|++ -+|+||++|-.|++|++.. .++++++.||-+.|.
T Consensus 40 M~tli~rFdeHdGpVRgv~FH~~q-plFVSGGDDykIkVWnYk~---------------------rrclftL~GHlDYVR 97 (1202)
T KOG0292|consen 40 MGTLIDRFDEHDGPVRGVDFHPTQ-PLFVSGGDDYKIKVWNYKT---------------------RRCLFTLLGHLDYVR 97 (1202)
T ss_pred hhhHHhhhhccCCccceeeecCCC-CeEEecCCccEEEEEeccc---------------------ceehhhhccccceeE
Confidence 445667777999999999999999 6999999999999999998 789999999999999
Q ss_pred EEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCC---
Q 018235 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK--- 310 (359)
Q Consensus 234 ~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~--- 310 (359)
.+.|++.-+ .++|+|.|.+|+||+..+ ++++ ..++||...|.|.+|+|.+. +++|+|-|.+|||||+....
T Consensus 98 t~~FHheyP-WIlSASDDQTIrIWNwqs-r~~i---avltGHnHYVMcAqFhptED-lIVSaSLDQTVRVWDisGLRkk~ 171 (1202)
T KOG0292|consen 98 TVFFHHEYP-WILSASDDQTIRIWNWQS-RKCI---AVLTGHNHYVMCAQFHPTED-LIVSASLDQTVRVWDISGLRKKN 171 (1202)
T ss_pred EeeccCCCc-eEEEccCCCeEEEEeccC-CceE---EEEecCceEEEeeccCCccc-eEEEecccceEEEEeecchhccC
Confidence 999999999 999999999999999987 5555 68999999999999999998 99999999999999985321
Q ss_pred -C----------------------ce--EEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 311 -S----------------------AL--TSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 311 -~----------------------~~--~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
. .+ +.+.+|.-.||-++|+|.-++++.+.. |..+++|..+.
T Consensus 172 ~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~D----DRqVKlWrmne 237 (1202)
T KOG0292|consen 172 KAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGAD----DRQVKLWRMNE 237 (1202)
T ss_pred CCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCC----cceeeEEEecc
Confidence 0 11 224789999999999999999998876 99999998764
No 55
>PTZ00420 coronin; Provisional
Probab=99.87 E-value=1e-19 Score=176.60 Aligned_cols=212 Identities=15% Similarity=0.120 Sum_probs=150.9
Q ss_pred cCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018235 66 GWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSD 145 (359)
Q Consensus 66 ~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~ 145 (359)
.-+.++++|.|+. ..+|+.|. .++.|.||++..-...
T Consensus 74 ~~~V~~lafsP~~----------~~lLASgS-----~DgtIrIWDi~t~~~~---------------------------- 110 (568)
T PTZ00420 74 TSSILDLQFNPCF----------SEILASGS-----EDLTIRVWEIPHNDES---------------------------- 110 (568)
T ss_pred CCCEEEEEEcCCC----------CCEEEEEe-----CCCeEEEEECCCCCcc----------------------------
Confidence 4578899998863 14677776 5779999988410000
Q ss_pred cccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEe
Q 018235 146 DDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF 225 (359)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (359)
.... ..+ ...+.+|.+.|++++|+|.+..++||++.||+|+|||+.. ...+..+
T Consensus 111 ~~~i---~~p--~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~t---------------------g~~~~~i 164 (568)
T PTZ00420 111 VKEI---KDP--QCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIEN---------------------EKRAFQI 164 (568)
T ss_pred cccc---ccc--eEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCC---------------------CcEEEEE
Confidence 0000 022 2345689999999999999877889999999999999987 3444555
Q ss_pred cCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEE-----EecCCCCCEEEEEeCCC-
Q 018235 226 GGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDL-----QWSPTEPDVFASCSVDG- 299 (359)
Q Consensus 226 ~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v-----~~sp~~~~~las~s~Dg- 299 (359)
. |...+++++|+|++. +|++++.|+.|+|||+++ +..+ ..+.+|.+.+... .|++++. +|++++.|+
T Consensus 165 ~-~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rs-g~~i---~tl~gH~g~~~s~~v~~~~fs~d~~-~IlTtG~d~~ 237 (568)
T PTZ00420 165 N-MPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRK-QEIA---SSFHIHDGGKNTKNIWIDGLGGDDN-YILSTGFSKN 237 (568)
T ss_pred e-cCCcEEEEEECCCCC-EEEEEecCCEEEEEECCC-CcEE---EEEecccCCceeEEEEeeeEcCCCC-EEEEEEcCCC
Confidence 4 556899999999998 999999999999999998 4444 5678898765433 3457877 777777664
Q ss_pred ---cEEEEECCCCCCceEEee--cCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 300 ---HIAIWDTRVGKSALTSFK--AHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 300 ---~I~iwD~r~~~~~~~~~~--~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
.|+|||+|....++..+. .+.+.+...-..+.+.+++++.. |+.|++|+...+.
T Consensus 238 ~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkG----D~tIr~~e~~~~~ 296 (568)
T PTZ00420 238 NMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKG----DGNCRYYQHSLGS 296 (568)
T ss_pred CccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEEC----CCeEEEEEccCCc
Confidence 799999997546665553 23333333333445777776655 9999999987664
No 56
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.87 E-value=4.3e-20 Score=168.99 Aligned_cols=192 Identities=20% Similarity=0.289 Sum_probs=153.3
Q ss_pred eEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccc----ccccccc-------------CCCCCC--
Q 018235 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALA----ESETIVG-------------QGAPQV-- 216 (359)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~----~~~~~~~-------------~~~~~~-- 216 (359)
......-.|...++-++|+|.| .++|+|...|+|+|||.......+. ....... .+.++-
T Consensus 50 ~~~~iYtEH~~~vtVAkySPsG-~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerf 128 (603)
T KOG0318|consen 50 ASVDIYTEHAHQVTVAKYSPSG-FYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERF 128 (603)
T ss_pred cceeeeccccceeEEEEeCCCc-eEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccce
Confidence 3344556799999999999999 8999999999999999876322111 0000000 000000
Q ss_pred ------CCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCC
Q 018235 217 ------SNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPD 290 (359)
Q Consensus 217 ------~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~ 290 (359)
..+..+-.+.||...+.+++|-|..+.+++||+.|++|.+|+=.- -+.. ..+..|..-|+|+.|+|+|.
T Consensus 129 g~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPP-FKFk---~s~r~HskFV~~VRysPDG~- 203 (603)
T KOG0318|consen 129 GHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPP-FKFK---SSFREHSKFVNCVRYSPDGS- 203 (603)
T ss_pred eEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCC-eeee---ecccccccceeeEEECCCCC-
Confidence 345566778999999999999999999999999999999997432 2222 56778999999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCCCceEEee---cCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 291 VFASCSVDGHIAIWDTRVGKSALTSFK---AHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 291 ~las~s~Dg~I~iwD~r~~~~~~~~~~---~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
+|||++.||.|.|||-.++ ..+..+. +|.+.|..|+|+|++..++...+ |.+++|||+.+.++
T Consensus 204 ~Fat~gsDgki~iyDGktg-e~vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa----Dkt~KIWdVs~~sl 269 (603)
T KOG0318|consen 204 RFATAGSDGKIYIYDGKTG-EKVGELEDSDAHKGSIFALSWSPDSTQFLTVSA----DKTIKIWDVSTNSL 269 (603)
T ss_pred eEEEecCCccEEEEcCCCc-cEEEEecCCCCccccEEEEEECCCCceEEEecC----CceEEEEEeeccce
Confidence 9999999999999999998 6777775 99999999999999999998887 99999999998764
No 57
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=2.9e-20 Score=157.56 Aligned_cols=172 Identities=19% Similarity=0.346 Sum_probs=142.4
Q ss_pred eEEEEEecCCCceeeEEEeCC-CCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEe-cCCCCceE
Q 018235 156 ILQLRKVAHQGCVNRIRAMTQ-NPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF-GGHKDEGY 233 (359)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~-~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~ 233 (359)
.++..+.+|++.|+.++|+|- | .+||||+.|..|+||+.... . ...+..++ .+|+..|.
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g-~ilAscg~Dk~vriw~~~~~-~-----------------s~~ck~vld~~hkrsVR 65 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKG-VILASCGTDKAVRIWSTSSG-D-----------------SWTCKTVLDDGHKRSVR 65 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCc-eEEEeecCCceEEEEecCCC-C-----------------cEEEEEeccccchheee
Confidence 455778899999999999998 5 79999999999999998841 0 01222222 47999999
Q ss_pred EEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCC--C
Q 018235 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK--S 311 (359)
Q Consensus 234 ~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~--~ 311 (359)
.++|+|.++ +|++||.|.++.||.-.. +.+.. ...+.||...|-+++|+++|. +||+|+.|++|-||.+.... .
T Consensus 66 svAwsp~g~-~La~aSFD~t~~Iw~k~~-~efec-v~~lEGHEnEVK~Vaws~sG~-~LATCSRDKSVWiWe~deddEfe 141 (312)
T KOG0645|consen 66 SVAWSPHGR-YLASASFDATVVIWKKED-GEFEC-VATLEGHENEVKCVAWSASGN-YLATCSRDKSVWIWEIDEDDEFE 141 (312)
T ss_pred eeeecCCCc-EEEEeeccceEEEeecCC-CceeE-EeeeeccccceeEEEEcCCCC-EEEEeeCCCeEEEEEecCCCcEE
Confidence 999999999 999999999999997653 43332 367899999999999999999 99999999999999998542 3
Q ss_pred ceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 312 ALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 312 ~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
++..+..|..+|..+.|+|...+|+...- |++|++|.-.
T Consensus 142 c~aVL~~HtqDVK~V~WHPt~dlL~S~SY----DnTIk~~~~~ 180 (312)
T KOG0645|consen 142 CIAVLQEHTQDVKHVIWHPTEDLLFSCSY----DNTIKVYRDE 180 (312)
T ss_pred EEeeeccccccccEEEEcCCcceeEEecc----CCeEEEEeec
Confidence 56667999999999999998887776543 9999999754
No 58
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.87 E-value=7.1e-20 Score=188.51 Aligned_cols=162 Identities=19% Similarity=0.203 Sum_probs=133.6
Q ss_pred cCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCC
Q 018235 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~ 242 (359)
.+...|.++.|+|....++|+++.||+|+|||+.. ...+..+.+|...|++++|+|...
T Consensus 530 ~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~---------------------~~~~~~~~~H~~~V~~l~~~p~~~ 588 (793)
T PLN00181 530 ASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVAR---------------------SQLVTEMKEHEKRVWSIDYSSADP 588 (793)
T ss_pred cccCceeeEEeccCCCCEEEEEeCCCeEEEEECCC---------------------CeEEEEecCCCCCEEEEEEcCCCC
Confidence 45678999999986557999999999999999986 466778899999999999997443
Q ss_pred CeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCC
Q 018235 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNAD 322 (359)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~ 322 (359)
.+|+||+.||+|++||+++ +... ..+.. ...|.+++|++....+|++|+.||.|++||++....++..+.+|...
T Consensus 589 ~~L~Sgs~Dg~v~iWd~~~-~~~~---~~~~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~ 663 (793)
T PLN00181 589 TLLASGSDDGSVKLWSINQ-GVSI---GTIKT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKT 663 (793)
T ss_pred CEEEEEcCCCEEEEEECCC-CcEE---EEEec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCC
Confidence 3999999999999999987 3333 34443 46899999966544499999999999999999874467778899999
Q ss_pred EEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 323 VNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 323 V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
|+++.|. ++.+++.+.. |+.|++||.+.
T Consensus 664 V~~v~f~-~~~~lvs~s~----D~~ikiWd~~~ 691 (793)
T PLN00181 664 VSYVRFV-DSSTLVSSST----DNTLKLWDLSM 691 (793)
T ss_pred EEEEEEe-CCCEEEEEEC----CCEEEEEeCCC
Confidence 9999997 5677776655 89999999874
No 59
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.86 E-value=1.1e-19 Score=187.10 Aligned_cols=168 Identities=18% Similarity=0.259 Sum_probs=139.3
Q ss_pred eEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEE
Q 018235 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAI 235 (359)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 235 (359)
.....+.+|.+.|+++.|+|.+..+|+||+.||+|++||+.. ...+.++..+ ..+.++
T Consensus 566 ~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~---------------------~~~~~~~~~~-~~v~~v 623 (793)
T PLN00181 566 QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ---------------------GVSIGTIKTK-ANICCV 623 (793)
T ss_pred eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCC---------------------CcEEEEEecC-CCeEEE
Confidence 444566789999999999985548999999999999999986 4556666654 578999
Q ss_pred EeCC-CCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCC-----
Q 018235 236 DWNP-ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG----- 309 (359)
Q Consensus 236 ~~sp-~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~----- 309 (359)
.|++ .+. +|++|+.||.|++||++...... ..+.+|...|.+++|. ++. .|++++.|++|+|||++..
T Consensus 624 ~~~~~~g~-~latgs~dg~I~iwD~~~~~~~~---~~~~~h~~~V~~v~f~-~~~-~lvs~s~D~~ikiWd~~~~~~~~~ 697 (793)
T PLN00181 624 QFPSESGR-SLAFGSADHKVYYYDLRNPKLPL---CTMIGHSKTVSYVRFV-DSS-TLVSSSTDNTLKLWDLSMSISGIN 697 (793)
T ss_pred EEeCCCCC-EEEEEeCCCeEEEEECCCCCccc---eEecCCCCCEEEEEEe-CCC-EEEEEECCCEEEEEeCCCCccccC
Confidence 9965 455 99999999999999998743222 4577899999999997 455 8999999999999999853
Q ss_pred CCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 310 KSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 310 ~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
..++..+.+|...+++++|++++.+++.+.. ++.+.+|+...
T Consensus 698 ~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~----D~~v~iw~~~~ 739 (793)
T PLN00181 698 ETPLHSFMGHTNVKNFVGLSVSDGYIATGSE----TNEVFVYHKAF 739 (793)
T ss_pred CcceEEEcCCCCCeeEEEEcCCCCEEEEEeC----CCEEEEEECCC
Confidence 1467788899999999999999999988876 89999999653
No 60
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=2.2e-19 Score=148.67 Aligned_cols=190 Identities=17% Similarity=0.276 Sum_probs=143.1
Q ss_pred CeEE-EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCcccccccccc------------------------c
Q 018235 155 PILQ-LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETI------------------------V 209 (359)
Q Consensus 155 ~~~~-~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~------------------------~ 209 (359)
|... .+...|.|.|.|.+|+|.| .++|||+.|.+|++.-+........++... .
T Consensus 78 p~v~~kr~khhkgsiyc~~ws~~g-eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~ 156 (350)
T KOG0641|consen 78 PSVLCKRNKHHKGSIYCTAWSPCG-ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILA 156 (350)
T ss_pred CeEEeeeccccCccEEEEEecCcc-CeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEE
Confidence 3444 4556688999999999999 899999999999998776532221111100 0
Q ss_pred cCCCCC-------CCCCCCcEEecCCCCceEEE-EeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccC---CCCC
Q 018235 210 GQGAPQ-------VSNQSPLVKFGGHKDEGYAI-DWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIG---HSAS 278 (359)
Q Consensus 210 ~~~~~~-------~~~~~~~~~~~~h~~~v~~l-~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~---h~~~ 278 (359)
..+.+. ...+.+...+.||++.|.+| .|+ +. ++++|+.|.+|++||++-.....+.-..+.+ ..+.
T Consensus 157 s~gagdc~iy~tdc~~g~~~~a~sghtghilalyswn--~~-m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessa 233 (350)
T KOG0641|consen 157 SAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSWN--GA-MFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSA 233 (350)
T ss_pred ecCCCcceEEEeecCCCCcceeecCCcccEEEEEEec--Cc-EEEccCCCceEEEEeeeccceeeeccCcccCCCcccce
Confidence 011111 04567888899999999887 785 33 9999999999999999974433221122322 2368
Q ss_pred eEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 279 VEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 279 V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
|.+|+..|.|. +|++|-.|.+..+||+|.+ .+++.+..|.++|.|+.|+|.-.+++...- |..|++-|..
T Consensus 234 vaav~vdpsgr-ll~sg~~dssc~lydirg~-r~iq~f~phsadir~vrfsp~a~yllt~sy----d~~ikltdlq 303 (350)
T KOG0641|consen 234 VAAVAVDPSGR-LLASGHADSSCMLYDIRGG-RMIQRFHPHSADIRCVRFSPGAHYLLTCSY----DMKIKLTDLQ 303 (350)
T ss_pred eEEEEECCCcc-eeeeccCCCceEEEEeeCC-ceeeeeCCCccceeEEEeCCCceEEEEecc----cceEEEeecc
Confidence 99999999999 9999999999999999998 899999999999999999998888776644 7778877654
No 61
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=1.7e-20 Score=156.15 Aligned_cols=168 Identities=17% Similarity=0.315 Sum_probs=143.6
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
..+..|+|+|+.++|+-+| +++.|++.|.+|++|+... +..+.++.+|..+|..++-+
T Consensus 11 ~~l~~~qgaV~avryN~dG-nY~ltcGsdrtvrLWNp~r---------------------g~liktYsghG~EVlD~~~s 68 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDG-NYCLTCGSDRTVRLWNPLR---------------------GALIKTYSGHGHEVLDAALS 68 (307)
T ss_pred eeecccccceEEEEEccCC-CEEEEcCCCceEEeecccc---------------------cceeeeecCCCceeeecccc
Confidence 4566899999999999999 8999999999999999876 78899999999999999999
Q ss_pred CCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCC-CceEEee
Q 018235 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK-SALTSFK 317 (359)
Q Consensus 239 p~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~-~~~~~~~ 317 (359)
.++. .|++|+.|..|.+||+.+ ++.. +.|.+|.+.|+.|+|+.... ++++||-|.++++||.|+.. +|++.+.
T Consensus 69 ~Dns-kf~s~GgDk~v~vwDV~T-Gkv~---Rr~rgH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~s~ePiQild 142 (307)
T KOG0316|consen 69 SDNS-KFASCGGDKAVQVWDVNT-GKVD---RRFRGHLAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSRSFEPIQILD 142 (307)
T ss_pred cccc-ccccCCCCceEEEEEccc-Ceee---eecccccceeeEEEecCcce-EEEeccccceeEEEEcccCCCCccchhh
Confidence 9998 999999999999999988 5555 78999999999999998877 99999999999999999862 3443321
Q ss_pred c--------------------------------------CCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 318 A--------------------------------------HNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 318 ~--------------------------------------h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
. ...+|+|++|++++..++.++- +.++++.|-.+|++
T Consensus 143 ea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l----~stlrLlDk~tGkl 217 (307)
T KOG0316|consen 143 EAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSL----DSTLRLLDKETGKL 217 (307)
T ss_pred hhcCceeEEEecccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeec----cceeeecccchhHH
Confidence 1 2457888888888888887765 88888888777753
No 62
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.86 E-value=3.9e-20 Score=163.30 Aligned_cols=183 Identities=17% Similarity=0.302 Sum_probs=143.4
Q ss_pred ecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCc-cccccccccccC---CCCCCCCCCCcEEecCCCCceEEEEe
Q 018235 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHL-NALAESETIVGQ---GAPQVSNQSPLVKFGGHKDEGYAIDW 237 (359)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (359)
.+|...|-+|+..+++ ..+++|+-|..|.||+..... ..+.......+. .........|+.++.||+.+|.++.|
T Consensus 190 ~GHk~~V~sVsv~~sg-tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w 268 (423)
T KOG0313|consen 190 RGHKRSVDSVSVDSSG-TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVW 268 (423)
T ss_pred cccccceeEEEecCCC-CeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEE
Confidence 3999999999999999 899999999999999943311 111111110000 00111246789999999999999999
Q ss_pred CCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCC--ceEE
Q 018235 238 NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS--ALTS 315 (359)
Q Consensus 238 sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~--~~~~ 315 (359)
++. +.++|++.|.+|+.||+.+++. . ..+. -..+.+++..+|... +||+|+.|..||+||.|++.. +.++
T Consensus 269 ~d~--~v~yS~SwDHTIk~WDletg~~-~---~~~~-~~ksl~~i~~~~~~~-Ll~~gssdr~irl~DPR~~~gs~v~~s 340 (423)
T KOG0313|consen 269 SDA--TVIYSVSWDHTIKVWDLETGGL-K---STLT-TNKSLNCISYSPLSK-LLASGSSDRHIRLWDPRTGDGSVVSQS 340 (423)
T ss_pred cCC--CceEeecccceEEEEEeecccc-e---eeee-cCcceeEeecccccc-eeeecCCCCceeecCCCCCCCceeEEe
Confidence 993 3899999999999999988543 2 2233 346889999999887 999999999999999999843 4456
Q ss_pred eecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 316 FKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 316 ~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
+.+|...|.++.|+|.+.+.+..... |+.+++||+++-
T Consensus 341 ~~gH~nwVssvkwsp~~~~~~~S~S~---D~t~klWDvRS~ 378 (423)
T KOG0313|consen 341 LIGHKNWVSSVKWSPTNEFQLVSGSY---DNTVKLWDVRST 378 (423)
T ss_pred eecchhhhhheecCCCCceEEEEEec---CCeEEEEEeccC
Confidence 78999999999999999988877664 999999999874
No 63
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.85 E-value=1.5e-21 Score=168.99 Aligned_cols=174 Identities=17% Similarity=0.189 Sum_probs=148.3
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
...++.+..+.|.+|+|++ +++++|+.||.|.+|++........- +-...-.|.-+...|.|++||
T Consensus 207 ~IKFg~KSh~EcA~FSPDg-qyLvsgSvDGFiEVWny~~GKlrKDL-------------kYQAqd~fMMmd~aVlci~FS 272 (508)
T KOG0275|consen 207 SIKFGQKSHVECARFSPDG-QYLVSGSVDGFIEVWNYTTGKLRKDL-------------KYQAQDNFMMMDDAVLCISFS 272 (508)
T ss_pred heecccccchhheeeCCCC-ceEeeccccceeeeehhccchhhhhh-------------hhhhhcceeecccceEEEeec
Confidence 3456778889999999999 89999999999999998762110000 112233455678899999999
Q ss_pred CCCCCeEEEEcCCCcEEEEecCCCCcceecCcccc-CCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEee
Q 018235 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFI-GHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK 317 (359)
Q Consensus 239 p~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~-~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~ 317 (359)
.+.+ +||||+.||.|++|.+++ +.++ +.|. +|+..|++++||.++. .+++++.|.++||.-+.++ +++..+.
T Consensus 273 RDsE-MlAsGsqDGkIKvWri~t-G~Cl---RrFdrAHtkGvt~l~FSrD~S-qiLS~sfD~tvRiHGlKSG-K~LKEfr 345 (508)
T KOG0275|consen 273 RDSE-MLASGSQDGKIKVWRIET-GQCL---RRFDRAHTKGVTCLSFSRDNS-QILSASFDQTVRIHGLKSG-KCLKEFR 345 (508)
T ss_pred ccHH-HhhccCcCCcEEEEEEec-chHH---HHhhhhhccCeeEEEEccCcc-hhhcccccceEEEeccccc-hhHHHhc
Confidence 9998 999999999999999998 5555 5565 8999999999999998 8899999999999999998 8999999
Q ss_pred cCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 318 AHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 318 ~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
+|.+-||...|.++|..++.... |+++++|+..+++
T Consensus 346 GHsSyvn~a~ft~dG~~iisaSs----DgtvkvW~~Ktte 381 (508)
T KOG0275|consen 346 GHSSYVNEATFTDDGHHIISASS----DGTVKVWHGKTTE 381 (508)
T ss_pred CccccccceEEcCCCCeEEEecC----CccEEEecCcchh
Confidence 99999999999999999998876 9999999998765
No 64
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=5.4e-20 Score=172.39 Aligned_cols=161 Identities=20% Similarity=0.409 Sum_probs=134.8
Q ss_pred CCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCC
Q 018235 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (359)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~ 243 (359)
|.+.|-+++|.. .++.+|+.+|.|.++|++.. .....++.+|..+|.+|.|++++.
T Consensus 259 h~~rvg~laW~~---~~lssGsr~~~I~~~dvR~~--------------------~~~~~~~~~H~qeVCgLkws~d~~- 314 (484)
T KOG0305|consen 259 HASRVGSLAWNS---SVLSSGSRDGKILNHDVRIS--------------------QHVVSTLQGHRQEVCGLKWSPDGN- 314 (484)
T ss_pred cCceeEEEeccC---ceEEEecCCCcEEEEEEecc--------------------hhhhhhhhcccceeeeeEECCCCC-
Confidence 999999999983 78999999999999999982 222234889999999999999998
Q ss_pred eEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEe--CCCcEEEEECCCCCCceEEeecCCC
Q 018235 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS--VDGHIAIWDTRVGKSALTSFKAHNA 321 (359)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s--~Dg~I~iwD~r~~~~~~~~~~~h~~ 321 (359)
+||||+.|+.++|||... ..+. ..+..|++.|.+++|+|....+||+|+ .|++|++||+.++ ..+..+. ..+
T Consensus 315 ~lASGgnDN~~~Iwd~~~-~~p~---~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g-~~i~~vd-tgs 388 (484)
T KOG0305|consen 315 QLASGGNDNVVFIWDGLS-PEPK---FTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG-ARIDSVD-TGS 388 (484)
T ss_pred eeccCCCccceEeccCCC-cccc---EEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC-cEecccc-cCC
Confidence 999999999999999955 3333 678899999999999999988999975 7999999999987 6666665 456
Q ss_pred CEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 322 DVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 322 ~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
.|..|.|++..+-++.+... ..+.|.||+..+.
T Consensus 389 QVcsL~Wsk~~kEi~sthG~--s~n~i~lw~~ps~ 421 (484)
T KOG0305|consen 389 QVCSLIWSKKYKELLSTHGY--SENQITLWKYPSM 421 (484)
T ss_pred ceeeEEEcCCCCEEEEecCC--CCCcEEEEecccc
Confidence 69999999998777766442 2557999987553
No 65
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=8.7e-20 Score=175.74 Aligned_cols=206 Identities=17% Similarity=0.252 Sum_probs=172.8
Q ss_pred ccCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018235 65 IGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDS 144 (359)
Q Consensus 65 ~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~ 144 (359)
.+-|.--+++.|.. ..||.|- ++-.|.||.+.
T Consensus 50 HdGpVRgv~FH~~q-----------plFVSGG-----DDykIkVWnYk-------------------------------- 81 (1202)
T KOG0292|consen 50 HDGPVRGVDFHPTQ-----------PLFVSGG-----DDYKIKVWNYK-------------------------------- 81 (1202)
T ss_pred cCCccceeeecCCC-----------CeEEecC-----CccEEEEEecc--------------------------------
Confidence 45777778887764 3666654 67789999873
Q ss_pred CcccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEE
Q 018235 145 DDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVK 224 (359)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (359)
...+..++.+|-.-|..+.|++.- -+|.|+|+|-+|+||+..+ .+++.+
T Consensus 82 ---------~rrclftL~GHlDYVRt~~FHhey-PWIlSASDDQTIrIWNwqs---------------------r~~iav 130 (1202)
T KOG0292|consen 82 ---------TRRCLFTLLGHLDYVRTVFFHHEY-PWILSASDDQTIRIWNWQS---------------------RKCIAV 130 (1202)
T ss_pred ---------cceehhhhccccceeEEeeccCCC-ceEEEccCCCeEEEEeccC---------------------CceEEE
Confidence 667778999999999999999988 5889999999999999998 789999
Q ss_pred ecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCC-------C---------c---------ceecCccccCCCCCe
Q 018235 225 FGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASD-------A---------T---------WNVDPNPFIGHSASV 279 (359)
Q Consensus 225 ~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~-------~---------~---------~~~~~~~~~~h~~~V 279 (359)
+.||...|.|..|+|... +++|+|-|.+|++||+..- + + -.+....+.||...|
T Consensus 131 ltGHnHYVMcAqFhptED-lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGV 209 (1202)
T KOG0292|consen 131 LTGHNHYVMCAQFHPTED-LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGV 209 (1202)
T ss_pred EecCceEEEeeccCCccc-eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccccccc
Confidence 999999999999999888 9999999999999998521 1 0 011124567999999
Q ss_pred EEEEecCCCCCEEEEEeCCCcEEEEECCCCC-CceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 280 EDLQWSPTEPDVFASCSVDGHIAIWDTRVGK-SALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 280 ~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~-~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
+.++|+|+-+ +|+||++|+.|++|.+...+ -.+-+..+|...|.++-|+|...+++.... |++|++||...
T Consensus 210 NwaAfhpTlp-liVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsE----DksirVwDm~k 281 (1202)
T KOG0292|consen 210 NWAAFHPTLP-LIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSE----DKSIRVWDMTK 281 (1202)
T ss_pred ceEEecCCcc-eEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCC----CccEEEEeccc
Confidence 9999999999 99999999999999987641 133445899999999999999999987766 99999999765
No 66
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.84 E-value=6.8e-20 Score=156.74 Aligned_cols=223 Identities=16% Similarity=0.296 Sum_probs=168.9
Q ss_pred ccccCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCC
Q 018235 63 FHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDE 142 (359)
Q Consensus 63 ~~~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 142 (359)
|.+++|..-+.|+|+..|. || .+++-| ..+|.+|++. +++.
T Consensus 93 fd~~YP~tK~~wiPd~~g~----~p---dlLATs------~D~LRlWri~----------------------~ee~---- 133 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGV----YP---DLLATS------SDFLRLWRIG----------------------DEES---- 133 (364)
T ss_pred CCCCCCccceEecCCcccc----Cc---chhhcc------cCeEEEEecc----------------------CcCC----
Confidence 6889999999999997543 66 344333 5599999993 0000
Q ss_pred CCCcccCCCCCCCeEE-EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCC
Q 018235 143 DSDDDEEGGSGTPILQ-LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSP 221 (359)
Q Consensus 143 d~~~~~~~~~~~~~~~-~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (359)
.-. ....+. .+...|..++++..|+.-.++++.+.+-|-+..|||+.... ....
T Consensus 134 ----~~~---~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~------------------~~~v 188 (364)
T KOG0290|consen 134 ----RVE---LQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGV------------------SGTV 188 (364)
T ss_pred ----cee---hhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeecc------------------ccce
Confidence 000 011222 23345778999999999889999999999999999998820 1223
Q ss_pred cEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccC--CCCCeEEEEecCCCCCEEEEEeCCC
Q 018235 222 LVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIG--HSASVEDLQWSPTEPDVFASCSVDG 299 (359)
Q Consensus 222 ~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~--h~~~V~~v~~sp~~~~~las~s~Dg 299 (359)
...+..|..+|+.++|...+...|||++.||.+++||+|...... ..+.. ...+...++|++...+++|+-..|.
T Consensus 189 kTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHST---IIYE~p~~~~pLlRLswnkqDpnymATf~~dS 265 (364)
T KOG0290|consen 189 KTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHST---IIYEDPSPSTPLLRLSWNKQDPNYMATFAMDS 265 (364)
T ss_pred eeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccce---EEecCCCCCCcceeeccCcCCchHHhhhhcCC
Confidence 456788999999999999888899999999999999999732211 12222 1457788999999999999977654
Q ss_pred -cEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 300 -HIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 300 -~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
.|.|.|+|.+..++..+..|.+.||.|+|.|...-.+.++. .|....+||...
T Consensus 266 ~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaG---DD~qaliWDl~q 319 (364)
T KOG0290|consen 266 NKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAG---DDCQALIWDLQQ 319 (364)
T ss_pred ceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecC---CcceEEEEeccc
Confidence 59999999987889999999999999999999876655543 388899999765
No 67
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.84 E-value=7.2e-21 Score=166.21 Aligned_cols=163 Identities=18% Similarity=0.296 Sum_probs=138.4
Q ss_pred eEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEE
Q 018235 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAI 235 (359)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 235 (359)
.+...+++|...|..++|+. .+++|++.|.++.+||+..+. .......+.||.+.|+.+
T Consensus 268 e~l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps------------------~it~rrVLvGHrAaVNvV 326 (499)
T KOG0281|consen 268 EPLNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPT------------------DITLRRVLVGHRAAVNVV 326 (499)
T ss_pred chhhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCch------------------HHHHHHHHhhhhhheeee
Confidence 34467789999999999986 689999999999999998732 123345788999999999
Q ss_pred EeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEE
Q 018235 236 DWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS 315 (359)
Q Consensus 236 ~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~ 315 (359)
+|+. . +++|++.|.+|++|++.+ ...+ +++.+|+..|-|+++ .+. ++++||.|.+|||||+..+ .++..
T Consensus 327 dfd~--k-yIVsASgDRTikvW~~st-~efv---Rtl~gHkRGIAClQY--r~r-lvVSGSSDntIRlwdi~~G-~cLRv 395 (499)
T KOG0281|consen 327 DFDD--K-YIVSASGDRTIKVWSTST-CEFV---RTLNGHKRGIACLQY--RDR-LVVSGSSDNTIRLWDIECG-ACLRV 395 (499)
T ss_pred cccc--c-eEEEecCCceEEEEeccc-eeee---hhhhcccccceehhc--cCe-EEEecCCCceEEEEecccc-HHHHH
Confidence 9965 3 999999999999999987 5665 889999999999998 466 9999999999999999998 88888
Q ss_pred eecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 316 FKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 316 ~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
+.+|..-|.||.|+ .+.++.+.- |+.|++||..++
T Consensus 396 LeGHEeLvRciRFd--~krIVSGaY----DGkikvWdl~aa 430 (499)
T KOG0281|consen 396 LEGHEELVRCIRFD--NKRIVSGAY----DGKIKVWDLQAA 430 (499)
T ss_pred HhchHHhhhheeec--Cceeeeccc----cceEEEEecccc
Confidence 99999999999998 444555433 999999998765
No 68
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.84 E-value=2.4e-19 Score=170.26 Aligned_cols=191 Identities=18% Similarity=0.270 Sum_probs=147.6
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccc----------------cccCCCCCC-
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESET----------------IVGQGAPQV- 216 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~----------------~~~~~~~~~- 216 (359)
...+.+++..|+..|+.+.|+..+ +.+.+.+-||+|+.||+..-.+ ++.... ....+....
T Consensus 381 SgfC~vTFteHts~Vt~v~f~~~g-~~llssSLDGtVRAwDlkRYrN-fRTft~P~p~QfscvavD~sGelV~AG~~d~F 458 (893)
T KOG0291|consen 381 SGFCFVTFTEHTSGVTAVQFTARG-NVLLSSSLDGTVRAWDLKRYRN-FRTFTSPEPIQFSCVAVDPSGELVCAGAQDSF 458 (893)
T ss_pred CceEEEEeccCCCceEEEEEEecC-CEEEEeecCCeEEeeeecccce-eeeecCCCceeeeEEEEcCCCCEEEeeccceE
Confidence 667888999999999999999999 8999999999999999875211 111110 000011110
Q ss_pred -------CCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCC
Q 018235 217 -------SNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEP 289 (359)
Q Consensus 217 -------~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~ 289 (359)
..++.+-++.||.++|.+|+|+|.+. .|+|||-|.+|++||+-.....+ .++ .+.+.|.+++|+|+|.
T Consensus 459 ~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~-~LaS~SWDkTVRiW~if~s~~~v---Etl-~i~sdvl~vsfrPdG~ 533 (893)
T KOG0291|consen 459 EIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGS-LLASGSWDKTVRIWDIFSSSGTV---ETL-EIRSDVLAVSFRPDGK 533 (893)
T ss_pred EEEEEEeecCeeeehhcCCCCcceeeEEccccC-eEEeccccceEEEEEeeccCcee---eeE-eeccceeEEEEcCCCC
Confidence 46777888999999999999999998 99999999999999996632222 333 4778899999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCCCceEEe--------------------ecCCCCEEEEEEcCCCCeEEEEeeecccceEEE
Q 018235 290 DVFASCSVDGHIAIWDTRVGKSALTSF--------------------KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFM 349 (359)
Q Consensus 290 ~~las~s~Dg~I~iwD~r~~~~~~~~~--------------------~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~ 349 (359)
-+|++..||.|.+||+... ..+.++ .+.....+.|+++++|.+++.+.. .+.|+
T Consensus 534 -elaVaTldgqItf~d~~~~-~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~----sn~iC 607 (893)
T KOG0291|consen 534 -ELAVATLDGQITFFDIKEA-VQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGE----SNSIC 607 (893)
T ss_pred -eEEEEEecceEEEEEhhhc-eeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCC----cccEE
Confidence 9999999999999999865 222111 122356899999999999998876 67899
Q ss_pred EEeCcCCc
Q 018235 350 ILDCSRGE 357 (359)
Q Consensus 350 iwd~~~g~ 357 (359)
|+++..+-
T Consensus 608 iY~v~~~v 615 (893)
T KOG0291|consen 608 IYDVPEGV 615 (893)
T ss_pred EEECchhh
Confidence 99988764
No 69
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.84 E-value=5.7e-19 Score=161.70 Aligned_cols=169 Identities=17% Similarity=0.261 Sum_probs=139.5
Q ss_pred CCe-EEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEec---CCC
Q 018235 154 TPI-LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG---GHK 229 (359)
Q Consensus 154 ~~~-~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~ 229 (359)
.|. +...+..|..-|+++||+|+| .+|||.+.||+|.|||-.+ +..+..|. +|.
T Consensus 178 PPFKFk~s~r~HskFV~~VRysPDG-~~Fat~gsDgki~iyDGkt---------------------ge~vg~l~~~~aHk 235 (603)
T KOG0318|consen 178 PPFKFKSSFREHSKFVNCVRYSPDG-SRFATAGSDGKIYIYDGKT---------------------GEKVGELEDSDAHK 235 (603)
T ss_pred CCeeeeecccccccceeeEEECCCC-CeEEEecCCccEEEEcCCC---------------------ccEEEEecCCCCcc
Confidence 444 335667799999999999999 8999999999999999877 56666776 899
Q ss_pred CceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCC---CCeEEEEecCCCCCEEEEEeCCCcEEEEEC
Q 018235 230 DEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHS---ASVEDLQWSPTEPDVFASCSVDGHIAIWDT 306 (359)
Q Consensus 230 ~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~---~~V~~v~~sp~~~~~las~s~Dg~I~iwD~ 306 (359)
+.|++|+|+|++. +|+|++.|.+++|||+.+ .++. +++.--. ..--.+-|- .. .|++.+.+|+|.+++.
T Consensus 236 GsIfalsWsPDs~-~~~T~SaDkt~KIWdVs~-~slv---~t~~~~~~v~dqqvG~lWq--kd-~lItVSl~G~in~ln~ 307 (603)
T KOG0318|consen 236 GSIFALSWSPDST-QFLTVSADKTIKIWDVST-NSLV---STWPMGSTVEDQQVGCLWQ--KD-HLITVSLSGTINYLNP 307 (603)
T ss_pred ccEEEEEECCCCc-eEEEecCCceEEEEEeec-cceE---EEeecCCchhceEEEEEEe--CC-eEEEEEcCcEEEEecc
Confidence 9999999999999 999999999999999987 4443 3332211 122234454 33 7999999999999999
Q ss_pred CCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 307 RVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 307 r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
... .++..+.+|+..|+++..++++++|+.+.. |+.|.-|+..+|.
T Consensus 308 ~d~-~~~~~i~GHnK~ITaLtv~~d~~~i~Sgsy----DG~I~~W~~~~g~ 353 (603)
T KOG0318|consen 308 SDP-SVLKVISGHNKSITALTVSPDGKTIYSGSY----DGHINSWDSGSGT 353 (603)
T ss_pred cCC-ChhheecccccceeEEEEcCCCCEEEeecc----CceEEEEecCCcc
Confidence 988 588889999999999999999999888766 9999999988774
No 70
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=7.4e-20 Score=153.03 Aligned_cols=178 Identities=16% Similarity=0.258 Sum_probs=146.6
Q ss_pred eEEEEEecCCCceeeEEEeC--CCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceE
Q 018235 156 ILQLRKVAHQGCVNRIRAMT--QNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (359)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p--~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (359)
.++..+.+|.|+|+.+.|.. .| .+||+++.||.|.||.-... .......+..|...++
T Consensus 47 ~ll~~L~Gh~GPVwqv~wahPk~G-~iLAScsYDgkVIiWke~~g-------------------~w~k~~e~~~h~~SVN 106 (299)
T KOG1332|consen 47 KLLAELTGHSGPVWKVAWAHPKFG-TILASCSYDGKVIIWKEENG-------------------RWTKAYEHAAHSASVN 106 (299)
T ss_pred eeeeEecCCCCCeeEEeecccccC-cEeeEeecCceEEEEecCCC-------------------chhhhhhhhhhcccce
Confidence 67788999999999999965 56 89999999999999998763 2455677889999999
Q ss_pred EEEeCCCCCC-eEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCC---CC----------CEEEEEeCCC
Q 018235 234 AIDWNPITTG-RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPT---EP----------DVFASCSVDG 299 (359)
Q Consensus 234 ~l~~sp~~~~-~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~---~~----------~~las~s~Dg 299 (359)
+++|.|...| .|++++.||.|.|.+.+..+.+.. .+....|.-.|++++|.|. |. ..|+||+.|.
T Consensus 107 sV~wapheygl~LacasSDG~vsvl~~~~~g~w~t-~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn 185 (299)
T KOG1332|consen 107 SVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTT-SKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDN 185 (299)
T ss_pred eecccccccceEEEEeeCCCcEEEEEEcCCCCccc-hhhhhccccccceeeecCcCCCccccccCcccccceeeccCCcc
Confidence 9999998766 678889999999999988655543 3557789999999999997 31 2599999999
Q ss_pred cEEEEECCCCCC-ceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 300 HIAIWDTRVGKS-ALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 300 ~I~iwD~r~~~~-~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
.|+||+.....- ...++.+|...|..++|.|.-.+......+++.|+.+-||-.+
T Consensus 186 ~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~ 241 (299)
T KOG1332|consen 186 LVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKD 241 (299)
T ss_pred ceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEec
Confidence 999999988622 2344799999999999999876665666666679999999755
No 71
>PF12265 CAF1C_H4-bd: Histone-binding protein RBBP4 or subunit C of CAF1 complex; InterPro: IPR022052 The CAF-1 complex is a conserved heterotrimeric protein complex that promotes histone H3 and H4 deposition onto newly synthesized DNA during replication or DNA repair; specifically it facilitates replication-dependent nucleosome assembly with the major histone H3 (H3.1). This domain is an alpha helix which sits just upstream of the WD40 seven-bladed beta-propeller in the human RbAp46 protein. RbAp46 folds into the beta-propeller and binds histone H4 in a groove formed between this N-terminal helix and an extended loop inserted into blade six []. ; PDB: 2YBA_A 3C99_A 2YB8_B 2XYI_A 3C9C_A 3CFV_B 3CFS_B 2XU7_A 3GFC_A.
Probab=99.84 E-value=2.2e-22 Score=142.49 Aligned_cols=64 Identities=42% Similarity=0.718 Sum_probs=47.0
Q ss_pred eeChhHhhhhhcccccCcceeEEEEeccC-CCCcccCCceEEEEEeecCCCCCCceEEEEEeeccC
Q 018235 51 QCDPTAYNSLHAFHIGWPCLSFDIVRDTL-GLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNIS 115 (359)
Q Consensus 51 ~~~~~~Y~~~~~~~~~wP~ls~~~~pd~~-~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~ 115 (359)
+++|+||+++|++.++||||||||+||.. +.+| .||++++|++||||++.++|+|+|++++++.
T Consensus 9 ~n~p~lYd~~~~~~l~WPsLS~dwlpd~~~~~~~-~~~~~~~ll~GT~t~~~~~n~l~v~~~~~p~ 73 (74)
T PF12265_consen 9 KNDPSLYDLLHTHSLEWPSLSFDWLPDSLEGDNR-NYPHSQYLLLGTQTSGQEQNYLYVMKVSLPS 73 (74)
T ss_dssp HHHHHHEEEEEEEE-SS--S-EEEEEEEEE--TT--SEEEEEEEEE---SS-S-EEEEEEEEEEE-
T ss_pred hCCHHHHHHHhhccCCCCCeEEEECcCcccccCC-CCccEEEEEEEECcCCCCCCEEEEEEEeCCC
Confidence 44559999999999999999999999998 7778 8999999999999999999999999997654
No 72
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.84 E-value=2.4e-19 Score=153.66 Aligned_cols=165 Identities=21% Similarity=0.335 Sum_probs=137.1
Q ss_pred cCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCC
Q 018235 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~ 242 (359)
+|+-.|..+.|-|....+|.+++-|.++++||..+ .+....|+- .+.||+-+|||...
T Consensus 99 ~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnT---------------------lQ~a~~F~m-e~~VYshamSp~a~ 156 (397)
T KOG4283|consen 99 GHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNT---------------------LQEAVDFKM-EGKVYSHAMSPMAM 156 (397)
T ss_pred cceeeeeeeEEeeecCceeecccccceEEEeeccc---------------------ceeeEEeec-CceeehhhcChhhh
Confidence 58889999999998878999999999999999987 344444532 45788999998653
Q ss_pred --CeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe----
Q 018235 243 --GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF---- 316 (359)
Q Consensus 243 --~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~---- 316 (359)
.++|+|..+-.|++.|+.+ +.+. ..+.||.+.|.+|.|+|....+||+|+.||.||+||+|....+...+
T Consensus 157 sHcLiA~gtr~~~VrLCDi~S-Gs~s---H~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn 232 (397)
T KOG4283|consen 157 SHCLIAAGTRDVQVRLCDIAS-GSFS---HTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHN 232 (397)
T ss_pred cceEEEEecCCCcEEEEeccC-Ccce---eeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeeccc
Confidence 3788898899999999987 5655 78999999999999999999999999999999999999763343333
Q ss_pred ----------ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 317 ----------KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 317 ----------~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
.+|.+.|+.++|..++.+++.... +..+++|+...|+
T Consensus 233 ~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt----d~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 233 TKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT----DDRIRVWNMESGR 279 (397)
T ss_pred CccCccccccccccceeeeeeecccchhhhhccC----ccceEEeecccCc
Confidence 367788999999999998776544 7889999988775
No 73
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.84 E-value=7.9e-19 Score=147.29 Aligned_cols=169 Identities=18% Similarity=0.238 Sum_probs=139.1
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceE
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (359)
..++..++....+.||++...|++ ..||+++ .-.|++||+++. +..|+.+|.+|+..|.
T Consensus 29 tG~C~rTiqh~dsqVNrLeiTpdk-~~LAaa~-~qhvRlyD~~S~-------------------np~Pv~t~e~h~kNVt 87 (311)
T KOG0315|consen 29 TGICSRTIQHPDSQVNRLEITPDK-KDLAAAG-NQHVRLYDLNSN-------------------NPNPVATFEGHTKNVT 87 (311)
T ss_pred cCeEEEEEecCccceeeEEEcCCc-chhhhcc-CCeeEEEEccCC-------------------CCCceeEEeccCCceE
Confidence 667755554445899999999999 6676655 478999999983 3468999999999999
Q ss_pred EEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCce
Q 018235 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL 313 (359)
Q Consensus 234 ~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~ 313 (359)
++.|.-+|+ .++||+.||+++|||+|.... +....|.++|++|..+|+.. -|++|..+|.|+|||++.. .+.
T Consensus 88 aVgF~~dgr-WMyTgseDgt~kIWdlR~~~~-----qR~~~~~spVn~vvlhpnQt-eLis~dqsg~irvWDl~~~-~c~ 159 (311)
T KOG0315|consen 88 AVGFQCDGR-WMYTGSEDGTVKIWDLRSLSC-----QRNYQHNSPVNTVVLHPNQT-ELISGDQSGNIRVWDLGEN-SCT 159 (311)
T ss_pred EEEEeecCe-EEEecCCCceEEEEeccCccc-----chhccCCCCcceEEecCCcc-eEEeecCCCcEEEEEccCC-ccc
Confidence 999999999 999999999999999998322 33445889999999999988 8999999999999999986 454
Q ss_pred EEe-ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 314 TSF-KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 314 ~~~-~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
..+ ..-...|.++...|+|..++.... .+...+|+.-.
T Consensus 160 ~~liPe~~~~i~sl~v~~dgsml~a~nn----kG~cyvW~l~~ 198 (311)
T KOG0315|consen 160 HELIPEDDTSIQSLTVMPDGSMLAAANN----KGNCYVWRLLN 198 (311)
T ss_pred cccCCCCCcceeeEEEcCCCcEEEEecC----CccEEEEEccC
Confidence 444 445578999999999999988765 56688898654
No 74
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=3.4e-19 Score=167.03 Aligned_cols=170 Identities=21% Similarity=0.307 Sum_probs=144.4
Q ss_pred eEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecC-CCCceEE
Q 018235 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGG-HKDEGYA 234 (359)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~ 234 (359)
+.....++ ...|+++.|++.| .+||.|..+|.|.|||... .+.+..+.+ |...|-+
T Consensus 209 v~~l~~~~-~~~vtSv~ws~~G-~~LavG~~~g~v~iwD~~~---------------------~k~~~~~~~~h~~rvg~ 265 (484)
T KOG0305|consen 209 VTELCSFG-EELVTSVKWSPDG-SHLAVGTSDGTVQIWDVKE---------------------QKKTRTLRGSHASRVGS 265 (484)
T ss_pred eEEeEecC-CCceEEEEECCCC-CEEEEeecCCeEEEEehhh---------------------ccccccccCCcCceeEE
Confidence 34333333 8999999999999 8999999999999999987 455667777 9999999
Q ss_pred EEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceE
Q 018235 235 IDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALT 314 (359)
Q Consensus 235 l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~ 314 (359)
|+|+ . ..+.+|+.++.|..+|++...... ..+.+|...|..+.|++++. .||+|+.|+.+.|||.... .+++
T Consensus 266 laW~--~-~~lssGsr~~~I~~~dvR~~~~~~---~~~~~H~qeVCgLkws~d~~-~lASGgnDN~~~Iwd~~~~-~p~~ 337 (484)
T KOG0305|consen 266 LAWN--S-SVLSSGSRDGKILNHDVRISQHVV---STLQGHRQEVCGLKWSPDGN-QLASGGNDNVVFIWDGLSP-EPKF 337 (484)
T ss_pred Eecc--C-ceEEEecCCCcEEEEEEecchhhh---hhhhcccceeeeeEECCCCC-eeccCCCccceEeccCCCc-cccE
Confidence 9999 3 389999999999999999854433 35889999999999999999 9999999999999999776 7889
Q ss_pred EeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 315 SFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 315 ~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
.+..|.+.|..++|+|...-|++.. .+..|.+|++|++.+|.
T Consensus 338 ~~~~H~aAVKA~awcP~q~~lLAsG-GGs~D~~i~fwn~~~g~ 379 (484)
T KOG0305|consen 338 TFTEHTAAVKALAWCPWQSGLLATG-GGSADRCIKFWNTNTGA 379 (484)
T ss_pred EEeccceeeeEeeeCCCccCceEEc-CCCcccEEEEEEcCCCc
Confidence 9999999999999999776554432 24569999999999875
No 75
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=7e-20 Score=166.33 Aligned_cols=165 Identities=19% Similarity=0.285 Sum_probs=143.2
Q ss_pred EecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCC
Q 018235 161 KVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI 240 (359)
Q Consensus 161 ~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~ 240 (359)
+......|.++.|..+| .++|.|...|.|+|||+.. ...+..+.+|+.++....|+|+
T Consensus 64 ~srFk~~v~s~~fR~DG-~LlaaGD~sG~V~vfD~k~---------------------r~iLR~~~ah~apv~~~~f~~~ 121 (487)
T KOG0310|consen 64 FSRFKDVVYSVDFRSDG-RLLAAGDESGHVKVFDMKS---------------------RVILRQLYAHQAPVHVTKFSPQ 121 (487)
T ss_pred HHhhccceeEEEeecCC-eEEEccCCcCcEEEecccc---------------------HHHHHHHhhccCceeEEEeccc
Confidence 34567889999999999 8999999999999999654 4557789999999999999999
Q ss_pred CCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCC
Q 018235 241 TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHN 320 (359)
Q Consensus 241 ~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~ 320 (359)
+...|++|+.|+.+++||+.+. . + ...+.+|+..|.+.+|+|...++++|||.||.||+||+|.....+.++ .|.
T Consensus 122 d~t~l~s~sDd~v~k~~d~s~a-~-v--~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg 196 (487)
T KOG0310|consen 122 DNTMLVSGSDDKVVKYWDLSTA-Y-V--QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHG 196 (487)
T ss_pred CCeEEEecCCCceEEEEEcCCc-E-E--EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe-cCC
Confidence 9889999999999999999763 2 2 357899999999999999999999999999999999999974455555 499
Q ss_pred CCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 321 ADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 321 ~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
.+|-++.+=|.|..++... .+.+++||..+|.
T Consensus 197 ~pVe~vl~lpsgs~iasAg-----Gn~vkVWDl~~G~ 228 (487)
T KOG0310|consen 197 CPVESVLALPSGSLIASAG-----GNSVKVWDLTTGG 228 (487)
T ss_pred CceeeEEEcCCCCEEEEcC-----CCeEEEEEecCCc
Confidence 9999999999999888764 5679999988664
No 76
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=4.4e-19 Score=160.36 Aligned_cols=203 Identities=16% Similarity=0.141 Sum_probs=165.0
Q ss_pred cCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCeEEEEEecC
Q 018235 85 EFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAH 164 (359)
Q Consensus 85 ~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~H 164 (359)
.+|...||++|| ....|++|.|+ ...+...+.+|
T Consensus 89 s~n~G~~l~ag~-----i~g~lYlWels-----------------------------------------sG~LL~v~~aH 122 (476)
T KOG0646|consen 89 SSNLGYFLLAGT-----ISGNLYLWELS-----------------------------------------SGILLNVLSAH 122 (476)
T ss_pred cCCCceEEEeec-----ccCcEEEEEec-----------------------------------------cccHHHHHHhh
Confidence 567778999998 45689999994 66676777899
Q ss_pred CCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCC-CC
Q 018235 165 QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPIT-TG 243 (359)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~-~~ 243 (359)
-..|+|++|+-++ .+|+||+.||.|.+|.+.......... ..+|.+.|..|+-+|+.|...+-+ ..
T Consensus 123 YQ~ITcL~fs~dg-s~iiTgskDg~V~vW~l~~lv~a~~~~------------~~~p~~~f~~HtlsITDl~ig~Gg~~~ 189 (476)
T KOG0646|consen 123 YQSITCLKFSDDG-SHIITGSKDGAVLVWLLTDLVSADNDH------------SVKPLHIFSDHTLSITDLQIGSGGTNA 189 (476)
T ss_pred ccceeEEEEeCCC-cEEEecCCCccEEEEEEEeecccccCC------------CccceeeeccCcceeEEEEecCCCccc
Confidence 9999999999999 899999999999999987643322221 368999999999999999887652 23
Q ss_pred eEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCC-------------
Q 018235 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK------------- 310 (359)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~------------- 310 (359)
+|+|+|.|.+|++||+.. +..+ ..+ ....++.+++.+|.+. .+..|+.+|.|.+.++....
T Consensus 190 rl~TaS~D~t~k~wdlS~-g~LL---lti-~fp~si~av~lDpae~-~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~ 263 (476)
T KOG0646|consen 190 RLYTASEDRTIKLWDLSL-GVLL---LTI-TFPSSIKAVALDPAER-VVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHE 263 (476)
T ss_pred eEEEecCCceEEEEEecc-ceee---EEE-ecCCcceeEEEccccc-EEEecCCcceEEeeehhcCCccccccccccccc
Confidence 999999999999999976 5544 222 2457899999999998 99999999999998876542
Q ss_pred --CceEEeecCCC--CEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 311 --SALTSFKAHNA--DVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 311 --~~~~~~~~h~~--~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
..+..+.+|.. .|+|++.|-+|.+|+.+.. ++.+++||+.+-
T Consensus 264 ~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~----dg~VcvWdi~S~ 309 (476)
T KOG0646|consen 264 ENTQINVLVGHENESAITCLAISTDGTLLLSGDE----DGKVCVWDIYSK 309 (476)
T ss_pred ccceeeeeccccCCcceeEEEEecCccEEEeeCC----CCCEEEEecchH
Confidence 12344567877 9999999999999998877 999999998653
No 77
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=7.6e-19 Score=146.29 Aligned_cols=157 Identities=19% Similarity=0.204 Sum_probs=124.8
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceE
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (359)
...++.+..+|..+|..++.+.++ ..||+|+.|..|.+||+.+ ++.++.|.+|.+.|+
T Consensus 48 rg~liktYsghG~EVlD~~~s~Dn-skf~s~GgDk~v~vwDV~T---------------------Gkv~Rr~rgH~aqVN 105 (307)
T KOG0316|consen 48 RGALIKTYSGHGHEVLDAALSSDN-SKFASCGGDKAVQVWDVNT---------------------GKVDRRFRGHLAQVN 105 (307)
T ss_pred ccceeeeecCCCceeeeccccccc-cccccCCCCceEEEEEccc---------------------Ceeeeecccccceee
Confidence 667888899999999999999988 7899999999999999998 788999999999999
Q ss_pred EEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCC---
Q 018235 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK--- 310 (359)
Q Consensus 234 ~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~--- 310 (359)
++.|+.... .++||+.|.++++||.|+... .+++.+......|.+|..+.. .|++||.||++|.||+|.+.
T Consensus 106 tV~fNeesS-Vv~SgsfD~s~r~wDCRS~s~--ePiQildea~D~V~Si~v~~h---eIvaGS~DGtvRtydiR~G~l~s 179 (307)
T KOG0316|consen 106 TVRFNEESS-VVASGSFDSSVRLWDCRSRSF--EPIQILDEAKDGVSSIDVAEH---EIVAGSVDGTVRTYDIRKGTLSS 179 (307)
T ss_pred EEEecCcce-EEEeccccceeEEEEcccCCC--CccchhhhhcCceeEEEeccc---EEEeeccCCcEEEEEeecceeeh
Confidence 999999988 999999999999999987322 234677778889999987533 78999999999999999872
Q ss_pred ----CceEEeecCCCCEEEEEEcCCCCeEEEE
Q 018235 311 ----SALTSFKAHNADVNVISWNRCWLAVCWH 338 (359)
Q Consensus 311 ----~~~~~~~~h~~~V~~i~~s~~~~~l~~~ 338 (359)
.|+..+......-..++=+-++.+-+.+
T Consensus 180 Dy~g~pit~vs~s~d~nc~La~~l~stlrLlD 211 (307)
T KOG0316|consen 180 DYFGHPITSVSFSKDGNCSLASSLDSTLRLLD 211 (307)
T ss_pred hhcCCcceeEEecCCCCEEEEeeccceeeecc
Confidence 3444443333333334434444444433
No 78
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.82 E-value=9.2e-19 Score=169.37 Aligned_cols=164 Identities=23% Similarity=0.324 Sum_probs=141.6
Q ss_pred CeEE-EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceE
Q 018235 155 PILQ-LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (359)
Q Consensus 155 ~~~~-~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (359)
...+ ..+.+|.+.|+++.+.. +..++++|+.|.++++||+.+ +.+..++.+|...|.
T Consensus 238 ~~~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~s---------------------g~C~~~l~gh~stv~ 295 (537)
T KOG0274|consen 238 GYLILTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCST---------------------GECTHSLQGHTSSVR 295 (537)
T ss_pred ceEEEeeccCCCCCceeEEEec-CCCEEEEEecCCcEEeEecCC---------------------CcEEEEecCCCceEE
Confidence 3444 44899999999999987 448999999999999999877 899999999999999
Q ss_pred EEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCce
Q 018235 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL 313 (359)
Q Consensus 234 ~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~ 313 (359)
++...+. ++++|+.|.+|++|++.+ +..+ ..+.+|..+|++++.+ +. ++++|+.|++|++||++++ +++
T Consensus 296 ~~~~~~~---~~~sgs~D~tVkVW~v~n-~~~l---~l~~~h~~~V~~v~~~--~~-~lvsgs~d~~v~VW~~~~~-~cl 364 (537)
T KOG0274|consen 296 CLTIDPF---LLVSGSRDNTVKVWDVTN-GACL---NLLRGHTGPVNCVQLD--EP-LLVSGSYDGTVKVWDPRTG-KCL 364 (537)
T ss_pred EEEccCc---eEeeccCCceEEEEeccC-cceE---EEeccccccEEEEEec--CC-EEEEEecCceEEEEEhhhc-eee
Confidence 9988663 889999999999999987 5554 6677899999999997 55 9999999999999999988 899
Q ss_pred EEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 314 TSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 314 ~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
.++.+|...|.++.+... ..++.+.- |+.|++||..+.
T Consensus 365 ~sl~gH~~~V~sl~~~~~-~~~~Sgs~----D~~IkvWdl~~~ 402 (537)
T KOG0274|consen 365 KSLSGHTGRVYSLIVDSE-NRLLSGSL----DTTIKVWDLRTK 402 (537)
T ss_pred eeecCCcceEEEEEecCc-ceEEeeee----ccceEeecCCch
Confidence 999999999999988876 44544443 899999999876
No 79
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.82 E-value=5.3e-19 Score=158.50 Aligned_cols=170 Identities=13% Similarity=0.183 Sum_probs=145.3
Q ss_pred eEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEE
Q 018235 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAI 235 (359)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 235 (359)
.+...+.+|...|+.+.++|.. ..+++++.|-.|+||.... .........|..+|+.+
T Consensus 252 q~l~~~~Gh~kki~~v~~~~~~-~~v~~aSad~~i~vws~~~---------------------~s~~~~~~~h~~~V~~l 309 (506)
T KOG0289|consen 252 QILATLKGHTKKITSVKFHKDL-DTVITASADEIIRVWSVPL---------------------SSEPTSSRPHEEPVTGL 309 (506)
T ss_pred hhhhhccCcceEEEEEEeccch-hheeecCCcceEEeecccc---------------------ccCccccccccccceee
Confidence 4446778999999999999988 7889999999999999877 23445677899999999
Q ss_pred EeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEE
Q 018235 236 DWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS 315 (359)
Q Consensus 236 ~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~ 315 (359)
..+|.+. +|++++.||++.+.|++++....+ ..-....-.+++++|||+|- +|++|..||.|+|||+..+ ..+..
T Consensus 310 s~h~tge-YllsAs~d~~w~Fsd~~~g~~lt~--vs~~~s~v~~ts~~fHpDgL-ifgtgt~d~~vkiwdlks~-~~~a~ 384 (506)
T KOG0289|consen 310 SLHPTGE-YLLSASNDGTWAFSDISSGSQLTV--VSDETSDVEYTSAAFHPDGL-IFGTGTPDGVVKIWDLKSQ-TNVAK 384 (506)
T ss_pred eeccCCc-EEEEecCCceEEEEEccCCcEEEE--EeeccccceeEEeeEcCCce-EEeccCCCceEEEEEcCCc-ccccc
Confidence 9999999 999999999999999998544321 11111224589999999999 9999999999999999998 57788
Q ss_pred eecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 316 FKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 316 ~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
|.+|.++|..|+|+.+|-+++.... |+.|++||.|..
T Consensus 385 Fpght~~vk~i~FsENGY~Lat~ad----d~~V~lwDLRKl 421 (506)
T KOG0289|consen 385 FPGHTGPVKAISFSENGYWLATAAD----DGSVKLWDLRKL 421 (506)
T ss_pred CCCCCCceeEEEeccCceEEEEEec----CCeEEEEEehhh
Confidence 9999999999999999999999987 888999999864
No 80
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.82 E-value=8e-20 Score=158.42 Aligned_cols=220 Identities=20% Similarity=0.315 Sum_probs=166.9
Q ss_pred CceeeeChhHhhhhhcccccC--------cceeEEEEeccCCCCc-------------------------ccCCceEEEE
Q 018235 47 GEELQCDPTAYNSLHAFHIGW--------PCLSFDIVRDTLGLVR-------------------------NEFPHTAYFV 93 (359)
Q Consensus 47 ~~~l~~~~~~Y~~~~~~~~~w--------P~ls~~~~pd~~~~~~-------------------------~~~~~~~~~~ 93 (359)
+|.-++.|+-.-.|...+|.| |-.++|.++....... ...|..+||+
T Consensus 150 ~EV~VVppSRLlaLlGQaLKWQqHQGLLPPGt~iDLFRGkAA~K~~~Ee~~Pt~l~r~IKFg~KSh~EcA~FSPDgqyLv 229 (508)
T KOG0275|consen 150 GEVHVVPPSRLLALLGQALKWQQHQGLLPPGTTIDLFRGKAAMKDQEEERYPTQLARSIKFGQKSHVECARFSPDGQYLV 229 (508)
T ss_pred CceEEcChHHHHHHHHHHhhhHhhcCCCCCCceeeeccchhhhhhhHhhhchHHhhhheecccccchhheeeCCCCceEe
Confidence 555566666666666666666 5667777664321100 1123457888
Q ss_pred EeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCeEEEEEecCCCceeeEEE
Q 018235 94 AGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRA 173 (359)
Q Consensus 94 ~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~ 173 (359)
.|+ .+++|.||.+.+ -+.+.+. +=.-.-.+.-|..+|.|+.|
T Consensus 230 sgS-----vDGFiEVWny~~-GKlrKDL--------------------------------kYQAqd~fMMmd~aVlci~F 271 (508)
T KOG0275|consen 230 SGS-----VDGFIEVWNYTT-GKLRKDL--------------------------------KYQAQDNFMMMDDAVLCISF 271 (508)
T ss_pred ecc-----ccceeeeehhcc-chhhhhh--------------------------------hhhhhcceeecccceEEEee
Confidence 887 577999998742 1111100 00011233457899999999
Q ss_pred eCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEec-CCCCceEEEEeCCCCCCeEEEEcCCC
Q 018235 174 MTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG-GHKDEGYAIDWNPITTGRLVTGDCNS 252 (359)
Q Consensus 174 ~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~sp~~~~~l~sgs~dg 252 (359)
+.+. .++|+|+.||.|++|.+.+ +.++..|. .|+..|+++.||.++. .++|++.|.
T Consensus 272 SRDs-EMlAsGsqDGkIKvWri~t---------------------G~ClRrFdrAHtkGvt~l~FSrD~S-qiLS~sfD~ 328 (508)
T KOG0275|consen 272 SRDS-EMLASGSQDGKIKVWRIET---------------------GQCLRRFDRAHTKGVTCLSFSRDNS-QILSASFDQ 328 (508)
T ss_pred cccH-HHhhccCcCCcEEEEEEec---------------------chHHHHhhhhhccCeeEEEEccCcc-hhhcccccc
Confidence 9988 8999999999999999998 67787786 8999999999999998 999999999
Q ss_pred cEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEee--cCCCCEEEEEEcC
Q 018235 253 CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK--AHNADVNVISWNR 330 (359)
Q Consensus 253 ~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~--~h~~~V~~i~~s~ 330 (359)
++++.-+.+ ++.+ ..|.||++.|+...|.++|. .+++||.||+|++|+..+. .++.+++ +...+|+++..-|
T Consensus 329 tvRiHGlKS-GK~L---KEfrGHsSyvn~a~ft~dG~-~iisaSsDgtvkvW~~Ktt-eC~~Tfk~~~~d~~vnsv~~~P 402 (508)
T KOG0275|consen 329 TVRIHGLKS-GKCL---KEFRGHSSYVNEATFTDDGH-HIISASSDGTVKVWHGKTT-ECLSTFKPLGTDYPVNSVILLP 402 (508)
T ss_pred eEEEecccc-chhH---HHhcCccccccceEEcCCCC-eEEEecCCccEEEecCcch-hhhhhccCCCCcccceeEEEcC
Confidence 999999987 6665 78999999999999999998 9999999999999999997 7887774 3455788887777
Q ss_pred CCC
Q 018235 331 CWL 333 (359)
Q Consensus 331 ~~~ 333 (359)
.+.
T Consensus 403 Knp 405 (508)
T KOG0275|consen 403 KNP 405 (508)
T ss_pred CCC
Confidence 654
No 81
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=4.7e-19 Score=157.98 Aligned_cols=230 Identities=18% Similarity=0.242 Sum_probs=160.6
Q ss_pred HhhhhhcccccCcceeEEEEeccCCCCc-ccCCc-eEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCC
Q 018235 56 AYNSLHAFHIGWPCLSFDIVRDTLGLVR-NEFPH-TAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDV 133 (359)
Q Consensus 56 ~Y~~~~~~~~~wP~ls~~~~pd~~~~~~-~~~~~-~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~ 133 (359)
+|.-.......-||-+.|++-+.....- ..|.+ ..||+.++ ++-...||++.+.
T Consensus 201 ll~Dh~c~~~qip~qt~qil~~htdEVWfl~FS~nGkyLAsaS-----kD~Taiiw~v~~d------------------- 256 (519)
T KOG0293|consen 201 LLSDHFCGRLQIPSQTWQILQDHTDEVWFLQFSHNGKYLASAS-----KDSTAIIWIVVYD------------------- 256 (519)
T ss_pred hhhhcccCcccCCchhhhhHhhCCCcEEEEEEcCCCeeEeecc-----CCceEEEEEEecC-------------------
Confidence 4444455667788888888877532211 12222 35666555 4557778888410
Q ss_pred CCCCCCCCCCCCcccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCC
Q 018235 134 DSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGA 213 (359)
Q Consensus 134 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~ 213 (359)
..-.+.+++++|..+|.-|+|+|+. +++++|+.+..+.+||..+
T Consensus 257 -------------------~~~kl~~tlvgh~~~V~yi~wSPDd-ryLlaCg~~e~~~lwDv~t---------------- 300 (519)
T KOG0293|consen 257 -------------------VHFKLKKTLVGHSQPVSYIMWSPDD-RYLLACGFDEVLSLWDVDT---------------- 300 (519)
T ss_pred -------------------cceeeeeeeecccCceEEEEECCCC-CeEEecCchHheeeccCCc----------------
Confidence 1335668999999999999999999 6777778888899999988
Q ss_pred CCCCCCCCcEEec-CCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCC---------------------Cccee----
Q 018235 214 PQVSNQSPLVKFG-GHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASD---------------------ATWNV---- 267 (359)
Q Consensus 214 ~~~~~~~~~~~~~-~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~---------------------~~~~~---- 267 (359)
+.....+. +|...+.+.+|.|++. .+++|+.|++|..||+... ++++.
T Consensus 301 -----gd~~~~y~~~~~~S~~sc~W~pDg~-~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~ 374 (519)
T KOG0293|consen 301 -----GDLRHLYPSGLGFSVSSCAWCPDGF-RFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTV 374 (519)
T ss_pred -----chhhhhcccCcCCCcceeEEccCCc-eeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEec
Confidence 33333332 3456788899999998 8999999999999987531 00000
Q ss_pred ------------------------------------------------------cCccccCCCCC--eEEEEecCCCCCE
Q 018235 268 ------------------------------------------------------DPNPFIGHSAS--VEDLQWSPTEPDV 291 (359)
Q Consensus 268 ------------------------------------------------------~~~~~~~h~~~--V~~v~~sp~~~~~ 291 (359)
..+.+.||+.. +-.-||--....+
T Consensus 375 d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~f 454 (519)
T KOG0293|consen 375 DKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKF 454 (519)
T ss_pred ccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcce
Confidence 01223355433 2223444444459
Q ss_pred EEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 292 FASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 292 las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
+||||.|+.|+||+.+++ +++..+.+|...|||++|||..+..+++. +.|++|+||.+..
T Consensus 455 iaSGSED~kvyIWhr~sg-kll~~LsGHs~~vNcVswNP~~p~m~ASa---sDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 455 IASGSEDSKVYIWHRISG-KLLAVLSGHSKTVNCVSWNPADPEMFASA---SDDGTIRIWGPSD 514 (519)
T ss_pred EEecCCCceEEEEEccCC-ceeEeecCCcceeeEEecCCCCHHHhhcc---CCCCeEEEecCCc
Confidence 999999999999999998 89999999999999999999887554433 2499999998764
No 82
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=1.2e-20 Score=178.17 Aligned_cols=169 Identities=19% Similarity=0.334 Sum_probs=152.2
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceE
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (359)
+|..+..+.+|.++|.+++|++.. .+|++|+.+|+|++||+.. .+.++++.||...+.
T Consensus 59 kp~~i~S~~~hespIeSl~f~~~E-~LlaagsasgtiK~wDlee---------------------Ak~vrtLtgh~~~~~ 116 (825)
T KOG0267|consen 59 KPNAITSLTGHESPIESLTFDTSE-RLLAAGSASGTIKVWDLEE---------------------AKIVRTLTGHLLNIT 116 (825)
T ss_pred CCchhheeeccCCcceeeecCcch-hhhcccccCCceeeeehhh---------------------hhhhhhhhccccCcc
Confidence 555555688999999999999988 8999999999999999997 677889999999999
Q ss_pred EEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCce
Q 018235 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL 313 (359)
Q Consensus 234 ~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~ 313 (359)
.++|+|.+. ++++|+.|+.+++||++..+. . ..+.+|...|..+.|+|+|. ++++++.|.+++|||++.+ +.+
T Consensus 117 sv~f~P~~~-~~a~gStdtd~~iwD~Rk~Gc-~---~~~~s~~~vv~~l~lsP~Gr-~v~~g~ed~tvki~d~~ag-k~~ 189 (825)
T KOG0267|consen 117 SVDFHPYGE-FFASGSTDTDLKIWDIRKKGC-S---HTYKSHTRVVDVLRLSPDGR-WVASGGEDNTVKIWDLTAG-KLS 189 (825)
T ss_pred eeeeccceE-EeccccccccceehhhhccCc-e---eeecCCcceeEEEeecCCCc-eeeccCCcceeeeeccccc-ccc
Confidence 999999998 999999999999999996343 3 67888999999999999999 9999999999999999998 778
Q ss_pred EEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 314 TSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 314 ~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
..|..|.+.|.++.|+|..-++..+.. +.++++||..+
T Consensus 190 ~ef~~~e~~v~sle~hp~e~Lla~Gs~----d~tv~f~dlet 227 (825)
T KOG0267|consen 190 KEFKSHEGKVQSLEFHPLEVLLAPGSS----DRTVRFWDLET 227 (825)
T ss_pred cccccccccccccccCchhhhhccCCC----Cceeeeeccce
Confidence 889999999999999998877776665 99999999874
No 83
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.82 E-value=3.3e-19 Score=153.79 Aligned_cols=186 Identities=11% Similarity=0.174 Sum_probs=144.7
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
..+..|++++.+.+|+|+| .++|||+.|..|+|+|+...+....... ...... ....-.+++|-.|..+|+.|+|+
T Consensus 106 ~ylt~HK~~cR~aafs~DG-~lvATGsaD~SIKildvermlaks~~~e-m~~~~~--qa~hPvIRTlYDH~devn~l~FH 181 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDG-SLVATGSADASIKILDVERMLAKSKPKE-MISGDT--QARHPVIRTLYDHVDEVNDLDFH 181 (430)
T ss_pred EEEeecccceeeeeeCCCC-cEEEccCCcceEEEeehhhhhhhcchhh-hccCCc--ccCCceEeehhhccCcccceeec
Confidence 4456799999999999999 8999999999999999985432221111 111100 00123467899999999999999
Q ss_pred CCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe--
Q 018235 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF-- 316 (359)
Q Consensus 239 p~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~-- 316 (359)
|... +|+||+.|++|++||+..... ... ........+|.+++|+|.|. +++.|..--++|+||+.+. ++...-
T Consensus 182 Pre~-ILiS~srD~tvKlFDfsK~sa-KrA-~K~~qd~~~vrsiSfHPsGe-fllvgTdHp~~rlYdv~T~-QcfvsanP 256 (430)
T KOG0640|consen 182 PRET-ILISGSRDNTVKLFDFSKTSA-KRA-FKVFQDTEPVRSISFHPSGE-FLLVGTDHPTLRLYDVNTY-QCFVSANP 256 (430)
T ss_pred chhh-eEEeccCCCeEEEEecccHHH-HHH-HHHhhccceeeeEeecCCCc-eEEEecCCCceeEEeccce-eEeeecCc
Confidence 9998 999999999999999965321 111 12223567899999999999 8999999999999999997 554443
Q ss_pred -ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 317 -KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 317 -~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
..|.+.|+++.+++.+++.+.+.. |+.|++||+-++.
T Consensus 257 d~qht~ai~~V~Ys~t~~lYvTaSk----DG~IklwDGVS~r 294 (430)
T KOG0640|consen 257 DDQHTGAITQVRYSSTGSLYVTASK----DGAIKLWDGVSNR 294 (430)
T ss_pred ccccccceeEEEecCCccEEEEecc----CCcEEeeccccHH
Confidence 579999999999999999888765 9999999986654
No 84
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.81 E-value=1.8e-18 Score=146.03 Aligned_cols=207 Identities=15% Similarity=0.224 Sum_probs=163.7
Q ss_pred CcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 018235 67 WPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDD 146 (359)
Q Consensus 67 wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~ 146 (359)
-+|-|+-|--++ .+|+.|.. +..+.|+.+..+
T Consensus 21 ~~v~Sv~wn~~g-----------~~lasgs~-----dktv~v~n~e~~-------------------------------- 52 (313)
T KOG1407|consen 21 QKVHSVAWNCDG-----------TKLASGSF-----DKTVSVWNLERD-------------------------------- 52 (313)
T ss_pred hcceEEEEcccC-----------ceeeeccc-----CCceEEEEecch--------------------------------
Confidence 357788888775 57777774 447888888432
Q ss_pred ccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEec
Q 018235 147 DEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG 226 (359)
Q Consensus 147 ~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (359)
.-.......+|.+.|-.+.|.|..+.++|+++.|.+|++||++. .++.....
T Consensus 53 -------r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~---------------------~k~~~~i~ 104 (313)
T KOG1407|consen 53 -------RFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRS---------------------GKCTARIE 104 (313)
T ss_pred -------hhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEecc---------------------CcEEEEee
Confidence 11112344589999999999999999999999999999999997 56666554
Q ss_pred CCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCC------------------------------c-------ceecC
Q 018235 227 GHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDA------------------------------T-------WNVDP 269 (359)
Q Consensus 227 ~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~------------------------------~-------~~~~~ 269 (359)
... +-.-+.|+|++. +++.|+.|..|.+.|.++.. . .+.+.
T Consensus 105 ~~~-eni~i~wsp~g~-~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv 182 (313)
T KOG1407|consen 105 TKG-ENINITWSPDGE-YIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPV 182 (313)
T ss_pred ccC-cceEEEEcCCCC-EEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccc
Confidence 433 344678888887 88888888888887776421 0 01133
Q ss_pred ccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEE
Q 018235 270 NPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFM 349 (359)
Q Consensus 270 ~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~ 349 (359)
..+.+|.+...||.|+|.|+ .||+|+.|..+.|||+... -+++.+..+.-+|..|+|+.+|++|+.+.. |..|-
T Consensus 183 ~si~AH~snCicI~f~p~Gr-yfA~GsADAlvSLWD~~EL-iC~R~isRldwpVRTlSFS~dg~~lASaSE----Dh~ID 256 (313)
T KOG1407|consen 183 QSIKAHPSNCICIEFDPDGR-YFATGSADALVSLWDVDEL-ICERCISRLDWPVRTLSFSHDGRMLASASE----DHFID 256 (313)
T ss_pred cccccCCcceEEEEECCCCc-eEeeccccceeeccChhHh-hhheeeccccCceEEEEeccCcceeeccCc----cceEE
Confidence 66778999999999999999 9999999999999999987 788889999999999999999999998866 88898
Q ss_pred EEeCcCCc
Q 018235 350 ILDCSRGE 357 (359)
Q Consensus 350 iwd~~~g~ 357 (359)
|-++.+|.
T Consensus 257 IA~vetGd 264 (313)
T KOG1407|consen 257 IAEVETGD 264 (313)
T ss_pred eEecccCC
Confidence 88887775
No 85
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.81 E-value=7.5e-19 Score=155.93 Aligned_cols=227 Identities=15% Similarity=0.219 Sum_probs=169.8
Q ss_pred hHhhhhhcccccCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCC
Q 018235 55 TAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVD 134 (359)
Q Consensus 55 ~~Y~~~~~~~~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~ 134 (359)
..|+-+--....|-|.-|..-| .++.+-..++++. ...|+- |+++.+-+
T Consensus 23 ~CYddIrVs~~tWDS~fcavNP-------------kfiAvi~easgGg--af~ViP---l~k~Gr~d------------- 71 (472)
T KOG0303|consen 23 QCYDDIRVSRVTWDSSFCAVNP-------------KFVAVIIEASGGG--AFLVIP---LVKTGRMD------------- 71 (472)
T ss_pred hhhcceeeeeeeccccccccCC-------------ceEEEEEecCCCc--ceeecc---cccccccC-------------
Confidence 6788888888888887666544 3666666666432 333332 22322211
Q ss_pred CCCCCCCCCCCcccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCC
Q 018235 135 SESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAP 214 (359)
Q Consensus 135 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~ 214 (359)
. .-| ...+|+++|..+.|+|.+.+.|||||+|.+|.||.+........
T Consensus 72 ~-----------------~~P----~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~----------- 119 (472)
T KOG0303|consen 72 A-----------------SYP----LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD----------- 119 (472)
T ss_pred C-----------------CCC----CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccC-----------
Confidence 0 022 23499999999999999999999999999999999977332211
Q ss_pred CCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEE
Q 018235 215 QVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFAS 294 (359)
Q Consensus 215 ~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las 294 (359)
...|+..+.||+..|.-+.|+|...+.|+|+++|.+|.+|++.++...+ .+. |...|++++|+.+|. +|++
T Consensus 120 ---ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali----~l~-hpd~i~S~sfn~dGs-~l~T 190 (472)
T KOG0303|consen 120 ---LTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALI----TLD-HPDMVYSMSFNRDGS-LLCT 190 (472)
T ss_pred ---cccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceee----ecC-CCCeEEEEEeccCCc-eeee
Confidence 2578999999999999999999999999999999999999998854433 344 999999999999999 9999
Q ss_pred EeCCCcEEEEECCCCCCceEEeecCCCC-EEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 295 CSVDGHIAIWDTRVGKSALTSFKAHNAD-VNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 295 ~s~Dg~I~iwD~r~~~~~~~~~~~h~~~-V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
.+.|+.|||||.|++ ..+..-.+|.+. -..+.|-.++.++.++. +...+..+.+|+...
T Consensus 191 tckDKkvRv~dpr~~-~~v~e~~~heG~k~~Raifl~~g~i~tTGf-sr~seRq~aLwdp~n 250 (472)
T KOG0303|consen 191 TCKDKKVRVIDPRRG-TVVSEGVAHEGAKPARAIFLASGKIFTTGF-SRMSERQIALWDPNN 250 (472)
T ss_pred ecccceeEEEcCCCC-cEeeecccccCCCcceeEEeccCceeeecc-ccccccceeccCccc
Confidence 999999999999998 666666677652 34456777788554444 344577788888654
No 86
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.81 E-value=8.7e-19 Score=149.89 Aligned_cols=220 Identities=18% Similarity=0.293 Sum_probs=147.7
Q ss_pred EEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCeEEEEEecCCCcee
Q 018235 90 AYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVN 169 (359)
Q Consensus 90 ~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~H~~~V~ 169 (359)
..|++||+..+.+ |+|.++++.. + ...++...+..|.|+|+
T Consensus 27 icFlvgTnslK~d-NqVhll~~d~-------------------------------e-------~s~l~skvf~h~agEvw 67 (370)
T KOG1007|consen 27 ICFLVGTNSLKED-NQVHLLRLDS-------------------------------E-------GSELLSKVFFHHAGEVW 67 (370)
T ss_pred eEEEEeccccCCc-ceeEEEEecC-------------------------------c-------cchhhhhhhhcCCccee
Confidence 7899999999754 9999999830 0 02223344556677777
Q ss_pred eEEEeCCCCcEEEEEeCC-------CcEEEEECCCCccc-----cccccccc-------------c-------CCCCCC-
Q 018235 170 RIRAMTQNPHICASWADT-------GHVQVWDLRSHLNA-----LAESETIV-------------G-------QGAPQV- 216 (359)
Q Consensus 170 ~i~~~p~~~~~lat~s~d-------g~V~iwd~~~~~~~-----~~~~~~~~-------------~-------~~~~~~- 216 (359)
.|+.+|..+.+++|+..+ -.+.||.+...... +....... + ...+++
T Consensus 68 ~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~dn~i~ 147 (370)
T KOG1007|consen 68 DLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMDDNNIV 147 (370)
T ss_pred hhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEeccCceE
Confidence 777777777777776542 23457777654322 00000000 0 000000
Q ss_pred -----CCCCCcEE-----ecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecC
Q 018235 217 -----SNQSPLVK-----FGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSP 286 (359)
Q Consensus 217 -----~~~~~~~~-----~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp 286 (359)
...+.+.. -..|....++-.|||...+.-+....|+++..||+|+..+.. ..-.+|...|.++.|+|
T Consensus 148 l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~---sI~dAHgq~vrdlDfNp 224 (370)
T KOG1007|consen 148 LWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNN---SIEDAHGQRVRDLDFNP 224 (370)
T ss_pred EEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhc---chhhhhcceeeeccCCC
Confidence 00110111 123556778889999655544444559999999999854433 44567999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 287 TEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 287 ~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
+-+++|+||+.||.|||||+|..+.++.++..|...|+++.|||.-..|+....+ |..+.+|-..
T Consensus 225 nkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~S---Ds~V~Lsca~ 289 (370)
T KOG1007|consen 225 NKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGS---DSAVNLSCAS 289 (370)
T ss_pred CceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCC---CceeEEEecc
Confidence 9999999999999999999999878999999999999999999976655554443 7777777543
No 87
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.81 E-value=6.1e-18 Score=148.83 Aligned_cols=169 Identities=16% Similarity=0.269 Sum_probs=138.4
Q ss_pred EEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEE
Q 018235 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAID 236 (359)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 236 (359)
....+.+|+..|.++.|+.++ .++|||.-+|.|+||...+ ......+..-...+.-|.
T Consensus 98 ~~~eltgHKDSVt~~~Fshdg-tlLATGdmsG~v~v~~~st---------------------g~~~~~~~~e~~dieWl~ 155 (399)
T KOG0296|consen 98 FAGELTGHKDSVTCCSFSHDG-TLLATGDMSGKVLVFKVST---------------------GGEQWKLDQEVEDIEWLK 155 (399)
T ss_pred ceeEecCCCCceEEEEEccCc-eEEEecCCCccEEEEEccc---------------------CceEEEeecccCceEEEE
Confidence 457788999999999999999 8999999999999999988 444555555567889999
Q ss_pred eCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe
Q 018235 237 WNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF 316 (359)
Q Consensus 237 ~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~ 316 (359)
|+|.+. .|+.|+.||.+.+|.+.+. ... +.+.||..++++-.|.|+|+ .++++..||+|++|+..++ ++++.+
T Consensus 156 WHp~a~-illAG~~DGsvWmw~ip~~-~~~---kv~~Gh~~~ct~G~f~pdGK-r~~tgy~dgti~~Wn~ktg-~p~~~~ 228 (399)
T KOG0296|consen 156 WHPRAH-ILLAGSTDGSVWMWQIPSQ-ALC---KVMSGHNSPCTCGEFIPDGK-RILTGYDDGTIIVWNPKTG-QPLHKI 228 (399)
T ss_pred eccccc-EEEeecCCCcEEEEECCCc-cee---eEecCCCCCcccccccCCCc-eEEEEecCceEEEEecCCC-ceeEEe
Confidence 999988 9999999999999999874 322 67999999999999999999 9999999999999999998 888877
Q ss_pred e-cCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 317 K-AHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 317 ~-~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
. +......++.++..+..++.+.+ +..+.+-...+|+|
T Consensus 229 ~~~e~~~~~~~~~~~~~~~~~~g~~----e~~~~~~~~~sgKV 267 (399)
T KOG0296|consen 229 TQAEGLELPCISLNLAGSTLTKGNS----EGVACGVNNGSGKV 267 (399)
T ss_pred cccccCcCCccccccccceeEeccC----CccEEEEccccceE
Confidence 4 33445677888887777665544 55555555555443
No 88
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.81 E-value=7.1e-19 Score=147.64 Aligned_cols=208 Identities=17% Similarity=0.263 Sum_probs=161.4
Q ss_pred hhhhcccccCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCC
Q 018235 58 NSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSES 137 (359)
Q Consensus 58 ~~~~~~~~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~ 137 (359)
+-||++....-.-+|.+-.|. .+||.|.| +.-|.|+.+. +.+
T Consensus 92 delhsf~hkhivk~~af~~ds-----------~~lltgg~-----ekllrvfdln---~p~------------------- 133 (334)
T KOG0278|consen 92 DELHSFEHKHIVKAVAFSQDS-----------NYLLTGGQ-----EKLLRVFDLN---RPK------------------- 133 (334)
T ss_pred hhhhhhhhhheeeeEEecccc-----------hhhhccch-----HHHhhhhhcc---CCC-------------------
Confidence 778999888888999998884 68998885 2345566542 221
Q ss_pred CCCCCCCCcccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCC
Q 018235 138 SDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVS 217 (359)
Q Consensus 138 ~~~~~d~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~ 217 (359)
.|.. .+.+|++.|..+.|+... +.|.+.++|++|++||.++
T Consensus 134 ----------------App~--E~~ghtg~Ir~v~wc~eD-~~iLSSadd~tVRLWD~rT-------------------- 174 (334)
T KOG0278|consen 134 ----------------APPK--EISGHTGGIRTVLWCHED-KCILSSADDKTVRLWDHRT-------------------- 174 (334)
T ss_pred ----------------CCch--hhcCCCCcceeEEEeccC-ceEEeeccCCceEEEEecc--------------------
Confidence 2222 334899999999999887 5666779999999999998
Q ss_pred CCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeC
Q 018235 218 NQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSV 297 (359)
Q Consensus 218 ~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~ 297 (359)
+..+.++.. ..++.++..++++. +++-...+.|.+||..+.+.. ..+ .-...|++.+.+|+.. +|++|+.
T Consensus 175 -gt~v~sL~~-~s~VtSlEvs~dG~--ilTia~gssV~Fwdaksf~~l----Ks~-k~P~nV~SASL~P~k~-~fVaGge 244 (334)
T KOG0278|consen 175 -GTEVQSLEF-NSPVTSLEVSQDGR--ILTIAYGSSVKFWDAKSFGLL----KSY-KMPCNVESASLHPKKE-FFVAGGE 244 (334)
T ss_pred -CcEEEEEec-CCCCcceeeccCCC--EEEEecCceeEEeccccccce----eec-cCccccccccccCCCc-eEEecCc
Confidence 555666643 44789999999986 555556789999999874332 222 2346789999999986 9999999
Q ss_pred CCcEEEEECCCCCCceEEe-ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 298 DGHIAIWDTRVGKSALTSF-KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 298 Dg~I~iwD~r~~~~~~~~~-~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
|..++.||..++ ..+-.+ ++|-++|.|+.|+|+|...+.+.. |++|++|....+.
T Consensus 245 d~~~~kfDy~Tg-eEi~~~nkgh~gpVhcVrFSPdGE~yAsGSE----DGTirlWQt~~~~ 300 (334)
T KOG0278|consen 245 DFKVYKFDYNTG-EEIGSYNKGHFGPVHCVRFSPDGELYASGSE----DGTIRLWQTTPGK 300 (334)
T ss_pred ceEEEEEeccCC-ceeeecccCCCCceEEEEECCCCceeeccCC----CceEEEEEecCCC
Confidence 999999999998 555554 899999999999999998877765 9999999976553
No 89
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.81 E-value=5.3e-19 Score=160.45 Aligned_cols=171 Identities=18% Similarity=0.254 Sum_probs=137.8
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceE
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (359)
...+..++.+|..+|..++|++++ .-|.|++.|+.|++||..+ ++.+..|.. ....+
T Consensus 247 ~~~~lrtf~gH~k~Vrd~~~s~~g-~~fLS~sfD~~lKlwDtET---------------------G~~~~~f~~-~~~~~ 303 (503)
T KOG0282|consen 247 DRRCLRTFKGHRKPVRDASFNNCG-TSFLSASFDRFLKLWDTET---------------------GQVLSRFHL-DKVPT 303 (503)
T ss_pred CcceehhhhcchhhhhhhhccccC-Ceeeeeecceeeeeecccc---------------------ceEEEEEec-CCCce
Confidence 445668889999999999999999 7888999999999999998 666666643 23678
Q ss_pred EEEeCCCCCCeEEEEcCCCcEEEEecCCCC--------------------------------------------------
Q 018235 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDA-------------------------------------------------- 263 (359)
Q Consensus 234 ~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~-------------------------------------------------- 263 (359)
++.|+|++...|++|..|+.|+.||+|++.
T Consensus 304 cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~ 383 (503)
T KOG0282|consen 304 CVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADP 383 (503)
T ss_pred eeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcch
Confidence 999999997799999999999999999751
Q ss_pred --------------cce--------------------ecCccccCCC--CCeEEEEecCCCCCEEEEEeCCCcEEEEECC
Q 018235 264 --------------TWN--------------------VDPNPFIGHS--ASVEDLQWSPTEPDVFASCSVDGHIAIWDTR 307 (359)
Q Consensus 264 --------------~~~--------------------~~~~~~~~h~--~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r 307 (359)
.+. .....|.||. +.-..|.|||+|. +|++|+.||.+.+||.+
T Consensus 384 ~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~-~l~SGdsdG~v~~wdwk 462 (503)
T KOG0282|consen 384 EMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGR-TLCSGDSDGKVNFWDWK 462 (503)
T ss_pred hhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCC-eEEeecCCccEEEeech
Confidence 000 0012233554 2345678999999 99999999999999999
Q ss_pred CCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEe
Q 018235 308 VGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILD 352 (359)
Q Consensus 308 ~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd 352 (359)
+. +.+..+++|..++..+.|+|...-.+.++. -++.|++|+
T Consensus 463 t~-kl~~~lkah~~~ci~v~wHP~e~Skvat~~---w~G~Ikiwd 503 (503)
T KOG0282|consen 463 TT-KLVSKLKAHDQPCIGVDWHPVEPSKVATCG---WDGLIKIWD 503 (503)
T ss_pred hh-hhhhccccCCcceEEEEecCCCcceeEecc---cCceeEecC
Confidence 97 778888999999999999998876555544 389999996
No 90
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=1.7e-18 Score=144.99 Aligned_cols=173 Identities=22% Similarity=0.364 Sum_probs=138.4
Q ss_pred EEEecCCCceeeEEEeCCC-CcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEe
Q 018235 159 LRKVAHQGCVNRIRAMTQN-PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~-~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (359)
.....|.+.||+|+|.|.+ ..+||+++.||.|.|.+++... ......+...|.-.+++++|
T Consensus 96 ~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g------------------~w~t~ki~~aH~~GvnsVsw 157 (299)
T KOG1332|consen 96 YEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSG------------------GWTTSKIVFAHEIGVNSVSW 157 (299)
T ss_pred hhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCC------------------Cccchhhhhccccccceeee
Confidence 3445899999999999987 4689999999999999998721 02233456789999999999
Q ss_pred CCC---CC----------CeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCC---CCEEEEEeCCCcE
Q 018235 238 NPI---TT----------GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTE---PDVFASCSVDGHI 301 (359)
Q Consensus 238 sp~---~~----------~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~---~~~las~s~Dg~I 301 (359)
.|. +. .+|+||++|..|+||+... ++|... +.|.+|+.-|.+++|+|.- .+.||+||.||+|
T Consensus 158 apa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~-~~w~~e-~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~v 235 (299)
T KOG1332|consen 158 APASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDS-DSWKLE-RTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTV 235 (299)
T ss_pred cCcCCCccccccCcccccceeeccCCccceeeeecCC-cchhhh-hhhhhcchhhhhhhhccccCCCceeeEEecCCCcE
Confidence 987 30 1699999999999999987 577643 4589999999999999974 4589999999999
Q ss_pred EEEECCCCCC--ceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 302 AIWDTRVGKS--ALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 302 ~iwD~r~~~~--~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
.||-.+.... ....+......++.++|+..|.+|+.+.. ++.+.+|..+.
T Consensus 236 iIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~G----dNkvtlwke~~ 287 (299)
T KOG1332|consen 236 IIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGG----DNKVTLWKENV 287 (299)
T ss_pred EEEEecCccCcccccccccCCcceEEEEEeccccEEEEecC----CcEEEEEEeCC
Confidence 9998874311 12223445678999999999999999877 88999997554
No 91
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.81 E-value=1.3e-18 Score=147.43 Aligned_cols=170 Identities=18% Similarity=0.274 Sum_probs=145.1
Q ss_pred EecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCC
Q 018235 161 KVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI 240 (359)
Q Consensus 161 ~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~ 240 (359)
+.+|..+++-|+++.+| .+|.|++.|.++.+|-... +..+-++.||++.|++++.+.+
T Consensus 6 l~GHERplTqiKyN~eG-DLlFscaKD~~~~vw~s~n---------------------GerlGty~GHtGavW~~Did~~ 63 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREG-DLLFSCAKDSTPTVWYSLN---------------------GERLGTYDGHTGAVWCCDIDWD 63 (327)
T ss_pred cccCccccceEEecCCC-cEEEEecCCCCceEEEecC---------------------CceeeeecCCCceEEEEEecCC
Confidence 56899999999999999 8999999999999998655 6788999999999999999988
Q ss_pred CCCeEEEEcCCCcEEEEecCCCCccee-------------------------------------------------cCcc
Q 018235 241 TTGRLVTGDCNSCIYLWEPASDATWNV-------------------------------------------------DPNP 271 (359)
Q Consensus 241 ~~~~l~sgs~dg~I~lwd~~~~~~~~~-------------------------------------------------~~~~ 271 (359)
.. +|+||+.|.+++|||+.++..... +...
T Consensus 64 s~-~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~k 142 (327)
T KOG0643|consen 64 SK-HLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLK 142 (327)
T ss_pred cc-eeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEE
Confidence 88 999999999999999987521000 0112
Q ss_pred ccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEE
Q 018235 272 FIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMIL 351 (359)
Q Consensus 272 ~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iw 351 (359)
+..+.+.++.+-|.|.+. .|++|..||.|.+||++++...+.+...|+..|+.|+++++..+++.++. |..-++|
T Consensus 143 I~t~~skit~a~Wg~l~~-~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~----Dttakl~ 217 (327)
T KOG0643|consen 143 IPTPDSKITSALWGPLGE-TIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSK----DTTAKLV 217 (327)
T ss_pred ecCCccceeeeeecccCC-EEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEeccc----Cccceee
Confidence 224567788899999999 99999999999999999985555566889999999999999999999887 9999999
Q ss_pred eCcCCcc
Q 018235 352 DCSRGEI 358 (359)
Q Consensus 352 d~~~g~v 358 (359)
|..+-++
T Consensus 218 D~~tl~v 224 (327)
T KOG0643|consen 218 DVRTLEV 224 (327)
T ss_pred eccceee
Confidence 9887654
No 92
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=2.3e-18 Score=149.05 Aligned_cols=166 Identities=16% Similarity=0.279 Sum_probs=146.3
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
..+.+|.+.|.+..|...+ ..++|++-|.+..+||+.+ +.++..+.||..+.+-++-+
T Consensus 266 ~~ltgH~~vV~a~dWL~gg-~Q~vTaSWDRTAnlwDVEt---------------------ge~v~~LtGHd~ELtHcstH 323 (481)
T KOG0300|consen 266 MRLTGHRAVVSACDWLAGG-QQMVTASWDRTANLWDVET---------------------GEVVNILTGHDSELTHCSTH 323 (481)
T ss_pred eeeeccccceEehhhhcCc-ceeeeeeccccceeeeecc---------------------CceeccccCcchhccccccC
Confidence 4667899999999999888 7889999999999999998 78899999999999999999
Q ss_pred CCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeec
Q 018235 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA 318 (359)
Q Consensus 239 p~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~ 318 (359)
|... ++++.+.|.+.++||++.. -.. ...|+||+..|+++.|..+.. +++||.|.+|+|||+|+...++.++.
T Consensus 324 ptQr-LVvTsSrDtTFRLWDFRea-I~s--V~VFQGHtdtVTS~vF~~dd~--vVSgSDDrTvKvWdLrNMRsplATIR- 396 (481)
T KOG0300|consen 324 PTQR-LVVTSSRDTTFRLWDFREA-IQS--VAVFQGHTDTVTSVVFNTDDR--VVSGSDDRTVKVWDLRNMRSPLATIR- 396 (481)
T ss_pred Ccce-EEEEeccCceeEeccchhh-cce--eeeecccccceeEEEEecCCc--eeecCCCceEEEeeeccccCcceeee-
Confidence 9998 9999999999999999863 222 367999999999999998775 89999999999999999877887775
Q ss_pred CCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 319 HNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 319 h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
..+++|.++.+..+++++.-.. +..+++||.+...
T Consensus 397 tdS~~NRvavs~g~~iIAiPhD----NRqvRlfDlnG~R 431 (481)
T KOG0300|consen 397 TDSPANRVAVSKGHPIIAIPHD----NRQVRLFDLNGNR 431 (481)
T ss_pred cCCccceeEeecCCceEEeccC----CceEEEEecCCCc
Confidence 5678999999998889888776 7789999987644
No 93
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=8.3e-19 Score=151.76 Aligned_cols=191 Identities=18% Similarity=0.277 Sum_probs=151.1
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCcc-----cccccccc---------ccC-----CCC
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLN-----ALAESETI---------VGQ-----GAP 214 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~-----~~~~~~~~---------~~~-----~~~ 214 (359)
...+..+..+|.|.||+|+|++++ .+++|++.|++.+||...-+.. ........ ... ..+
T Consensus 179 sg~CL~~Y~GH~GSVNsikfh~s~-~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD 257 (481)
T KOG0300|consen 179 SGACLATYTGHTGSVNSIKFHNSG-LLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSD 257 (481)
T ss_pred cccceeeecccccceeeEEecccc-ceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccC
Confidence 556667888999999999999999 8999999999999998432110 00000000 000 001
Q ss_pred CCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEE
Q 018235 215 QVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFAS 294 (359)
Q Consensus 215 ~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las 294 (359)
...-..|+..|.+|...|.+.+|-.-+. .+++++-|.+..+||+.+ +..+ .++.||....+-++-+|+.. ++++
T Consensus 258 ~~tiRvPl~~ltgH~~vV~a~dWL~gg~-Q~vTaSWDRTAnlwDVEt-ge~v---~~LtGHd~ELtHcstHptQr-LVvT 331 (481)
T KOG0300|consen 258 GHTIRVPLMRLTGHRAVVSACDWLAGGQ-QMVTASWDRTANLWDVET-GEVV---NILTGHDSELTHCSTHPTQR-LVVT 331 (481)
T ss_pred CceeeeeeeeeeccccceEehhhhcCcc-eeeeeeccccceeeeecc-Ccee---ccccCcchhccccccCCcce-EEEE
Confidence 1122457889999999999999999888 999999999999999988 5655 78999999999999999998 9999
Q ss_pred EeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 295 CSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 295 ~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
.|.|-+.|+||+|..-..+..|.+|...|+++.|+.+.+.+ .+.. |.++++||.+..
T Consensus 332 sSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vV-SgSD----DrTvKvWdLrNM 388 (481)
T KOG0300|consen 332 SSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVV-SGSD----DRTVKVWDLRNM 388 (481)
T ss_pred eccCceeEeccchhhcceeeeecccccceeEEEEecCCcee-ecCC----CceEEEeeeccc
Confidence 99999999999997645566789999999999999887754 3333 889999998764
No 94
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=1.4e-18 Score=162.79 Aligned_cols=173 Identities=18% Similarity=0.243 Sum_probs=147.2
Q ss_pred EEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEe
Q 018235 158 QLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (359)
Q Consensus 158 ~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (359)
..++..|...||.+..+..+ ..++++|.|-+|++|+..... ..+..++..|.+.|.||+.
T Consensus 66 ~asme~HsDWVNDiiL~~~~-~tlIS~SsDtTVK~W~~~~~~-------------------~~c~stir~H~DYVkcla~ 125 (735)
T KOG0308|consen 66 IASMEHHSDWVNDIILCGNG-KTLISASSDTTVKVWNAHKDN-------------------TFCMSTIRTHKDYVKCLAY 125 (735)
T ss_pred hhhhhhhHhHHhhHHhhcCC-CceEEecCCceEEEeecccCc-------------------chhHhhhhcccchheeeee
Confidence 36677899999999999988 789999999999999998731 2566788899999999999
Q ss_pred -CCCCCCeEEEEcCCCcEEEEecCCCCc-c-----eecCcccc-CCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCC
Q 018235 238 -NPITTGRLVTGDCNSCIYLWEPASDAT-W-----NVDPNPFI-GHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG 309 (359)
Q Consensus 238 -sp~~~~~l~sgs~dg~I~lwd~~~~~~-~-----~~~~~~~~-~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~ 309 (359)
.++.. ++|||+-|+.|.|||++++.. . .+....+. |+..+|++++.++++. +|++|+..+.|++||.|+.
T Consensus 126 ~ak~~~-lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t-~ivsGgtek~lr~wDprt~ 203 (735)
T KOG0308|consen 126 IAKNNE-LVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGT-IIVSGGTEKDLRLWDPRTC 203 (735)
T ss_pred cccCce-eEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcce-EEEecCcccceEEeccccc
Confidence 67776 999999999999999986421 0 01123333 8999999999999997 9999999999999999998
Q ss_pred CCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 310 KSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 310 ~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
+.+..+.+|...|.++-.+++|..++.+.. |++|++|+..-..
T Consensus 204 -~kimkLrGHTdNVr~ll~~dDGt~~ls~sS----DgtIrlWdLgqQr 246 (735)
T KOG0308|consen 204 -KKIMKLRGHTDNVRVLLVNDDGTRLLSASS----DGTIRLWDLGQQR 246 (735)
T ss_pred -cceeeeeccccceEEEEEcCCCCeEeecCC----CceEEeeeccccc
Confidence 667778899999999999999999998877 9999999987543
No 95
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.79 E-value=1.1e-17 Score=162.03 Aligned_cols=166 Identities=22% Similarity=0.367 Sum_probs=140.0
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceE
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (359)
.+.....+.+|.+.|+++... + .++++|+.||+|.+||+.. .+++.++.+|...|+
T Consensus 320 n~~~l~l~~~h~~~V~~v~~~--~-~~lvsgs~d~~v~VW~~~~---------------------~~cl~sl~gH~~~V~ 375 (537)
T KOG0274|consen 320 NGACLNLLRGHTGPVNCVQLD--E-PLLVSGSYDGTVKVWDPRT---------------------GKCLKSLSGHTGRVY 375 (537)
T ss_pred CcceEEEeccccccEEEEEec--C-CEEEEEecCceEEEEEhhh---------------------ceeeeeecCCcceEE
Confidence 455556666799999999998 3 6899999999999999997 789999999999999
Q ss_pred EEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCce
Q 018235 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL 313 (359)
Q Consensus 234 ~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~ 313 (359)
++.+... . ++++|+.|++|++||+++..+++ ..+.+|.+.|.++.+. +. +|.+++.|++|++||...+ .++
T Consensus 376 sl~~~~~-~-~~~Sgs~D~~IkvWdl~~~~~c~---~tl~~h~~~v~~l~~~--~~-~Lvs~~aD~~Ik~WD~~~~-~~~ 446 (537)
T KOG0274|consen 376 SLIVDSE-N-RLLSGSLDTTIKVWDLRTKRKCI---HTLQGHTSLVSSLLLR--DN-FLVSSSADGTIKLWDAEEG-ECL 446 (537)
T ss_pred EEEecCc-c-eEEeeeeccceEeecCCchhhhh---hhhcCCcccccccccc--cc-eeEeccccccEEEeecccC-cee
Confidence 9988765 4 99999999999999998842444 7899999999877653 44 8999999999999999998 888
Q ss_pred EEeec-CCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 314 TSFKA-HNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 314 ~~~~~-h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
..+.+ |...|..+++. ...++.... ++.+++||.+++..
T Consensus 447 ~~~~~~~~~~v~~l~~~--~~~il~s~~----~~~~~l~dl~~~~~ 486 (537)
T KOG0274|consen 447 RTLEGRHVGGVSALALG--KEEILCSSD----DGSVKLWDLRSGTL 486 (537)
T ss_pred eeeccCCcccEEEeecC--cceEEEEec----CCeeEEEecccCch
Confidence 88877 67889888877 455555555 88999999998763
No 96
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.79 E-value=1.8e-18 Score=170.42 Aligned_cols=178 Identities=20% Similarity=0.374 Sum_probs=147.3
Q ss_pred EEecCC-CceeeEEEeCCCCcEEEEEe--CCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEE
Q 018235 160 RKVAHQ-GCVNRIRAMTQNPHICASWA--DTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAID 236 (359)
Q Consensus 160 ~~~~H~-~~V~~i~~~p~~~~~lat~s--~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 236 (359)
....|. ..|..|..+|++ ..+|||+ .||.+.||+...-......... .-.+.+.+...|.+.|.|+.
T Consensus 7 ~wv~H~~~~IfSIdv~pdg-~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~---------~l~k~l~~m~~h~~sv~CVR 76 (942)
T KOG0973|consen 7 TWVNHNEKSIFSIDVHPDG-VKFATGGQVLDGGIVIWSQDPVLDEKEEKNE---------NLPKHLCTMDDHDGSVNCVR 76 (942)
T ss_pred cccccCCeeEEEEEecCCc-eeEecCCccccccceeeccccccchhhhhhc---------ccchhheeeccccCceeEEE
Confidence 334554 568999999999 8999999 8999999998763321111110 01466788999999999999
Q ss_pred eCCCCCCeEEEEcCCCcEEEEecCC-CC--------------cceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcE
Q 018235 237 WNPITTGRLVTGDCNSCIYLWEPAS-DA--------------TWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHI 301 (359)
Q Consensus 237 ~sp~~~~~l~sgs~dg~I~lwd~~~-~~--------------~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I 301 (359)
|+|+|. +||+|+.|+.|.||.... +. +|. ....+.+|...|.+++|+|++. +||++|.|++|
T Consensus 77 ~S~dG~-~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk-~~~~l~~H~~DV~Dv~Wsp~~~-~lvS~s~DnsV 153 (942)
T KOG0973|consen 77 FSPDGS-YLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWK-VVSILRGHDSDVLDVNWSPDDS-LLVSVSLDNSV 153 (942)
T ss_pred ECCCCC-eEeeccCcceEEEeeecccCCcccccccccccccceee-EEEEEecCCCccceeccCCCcc-EEEEecccceE
Confidence 999999 999999999999998762 10 122 1356789999999999999998 99999999999
Q ss_pred EEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 302 AIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 302 ~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
.||+.++. ..+..+.+|.+.|-.++|.|-|++++.... |++|++|+...
T Consensus 154 iiwn~~tF-~~~~vl~~H~s~VKGvs~DP~Gky~ASqsd----Drtikvwrt~d 202 (942)
T KOG0973|consen 154 IIWNAKTF-ELLKVLRGHQSLVKGVSWDPIGKYFASQSD----DRTLKVWRTSD 202 (942)
T ss_pred EEEccccc-eeeeeeecccccccceEECCccCeeeeecC----CceEEEEEccc
Confidence 99999999 888899999999999999999999998876 99999999654
No 97
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=1.5e-17 Score=143.96 Aligned_cols=172 Identities=15% Similarity=0.146 Sum_probs=132.7
Q ss_pred eEEEEEecCCCceeeEEEeCCC-CcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEE
Q 018235 156 ILQLRKVAHQGCVNRIRAMTQN-PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYA 234 (359)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~-~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 234 (359)
+....+..|.|.||++.|.+.- ...+.+|++||.|.+|+... ...+.++++|...|+.
T Consensus 74 ~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~---------------------W~~~~slK~H~~~Vt~ 132 (362)
T KOG0294|consen 74 KQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS---------------------WELLKSLKAHKGQVTD 132 (362)
T ss_pred hhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCC---------------------eEEeeeecccccccce
Confidence 3335667899999999998755 23688899999999999987 7888999999999999
Q ss_pred EEeCCCCCCeEEEEcCCCcEEEEecCCCCcc-eecCcc------cc----------------------------CCCCCe
Q 018235 235 IDWNPITTGRLVTGDCNSCIYLWEPASDATW-NVDPNP------FI----------------------------GHSASV 279 (359)
Q Consensus 235 l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~-~~~~~~------~~----------------------------~h~~~V 279 (359)
|+.+|.+. +-+|.+.|+.+++|++-.+..- +..+.. +. .....+
T Consensus 133 lsiHPS~K-LALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~ 211 (362)
T KOG0294|consen 133 LSIHPSGK-LALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRI 211 (362)
T ss_pred eEecCCCc-eEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccc
Confidence 99999998 8888899999999999764210 000000 00 001123
Q ss_pred EEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEE--cCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 280 EDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISW--NRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 280 ~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~--s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
.++.|- ....+++|..|+.|++||.... .++..+.+|...|..|.+ +|.+.+|+.... |+.|++||....
T Consensus 212 l~~~~l--~~~~L~vG~d~~~i~~~D~ds~-~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSS----DG~I~vWd~~~~ 283 (362)
T KOG0294|consen 212 LCATFL--DGSELLVGGDNEWISLKDTDSD-TPLTEFLAHENRVKDIASYTNPEHEYLVTASS----DGFIKVWDIDME 283 (362)
T ss_pred eeeeec--CCceEEEecCCceEEEeccCCC-ccceeeecchhheeeeEEEecCCceEEEEecc----CceEEEEEcccc
Confidence 344442 3347899999999999999986 788999999999999874 567778877766 999999998765
No 98
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=4.7e-19 Score=175.33 Aligned_cols=174 Identities=20% Similarity=0.310 Sum_probs=140.3
Q ss_pred EEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEE-ecCCCCceEEEE
Q 018235 158 QLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVK-FGGHKDEGYAID 236 (359)
Q Consensus 158 ~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~ 236 (359)
+.+...|+|.|..+.|++..++++|+|+.+|.|.|||+.... .|..- -.....+|.+|+
T Consensus 109 la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~--------------------tP~~~~~~~~~~eI~~ls 168 (1049)
T KOG0307|consen 109 LATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPE--------------------TPFTPGSQAPPSEIKCLS 168 (1049)
T ss_pred HhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcC--------------------CCCCCCCCCCcccceEec
Confidence 366678999999999999998899999999999999999832 22110 122356899999
Q ss_pred eCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCC--CCCeEEEEecCCCCCEEEEEeCCC---cEEEEECCCCCC
Q 018235 237 WNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGH--SASVEDLQWSPTEPDVFASCSVDG---HIAIWDTRVGKS 311 (359)
Q Consensus 237 ~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h--~~~V~~v~~sp~~~~~las~s~Dg---~I~iwD~r~~~~ 311 (359)
|+......|+|++.+|++.|||+|. .+.++ .+..| ...+..|+|||++.+.+++++.|. .|.+||+|....
T Consensus 169 WNrkvqhILAS~s~sg~~~iWDlr~-~~pii---~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ass 244 (1049)
T KOG0307|consen 169 WNRKVSHILASGSPSGRAVIWDLRK-KKPII---KLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASS 244 (1049)
T ss_pred cchhhhHHhhccCCCCCceeccccC-CCccc---ccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCC
Confidence 9998877999999999999999998 44442 23323 245789999999998888888654 499999998877
Q ss_pred ceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 312 ALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 312 ~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
++..+..|...|.+++|++.+..++.++. .|+.+.+|+..+|+|
T Consensus 245 P~k~~~~H~~GilslsWc~~D~~lllSsg---kD~~ii~wN~~tgEv 288 (1049)
T KOG0307|consen 245 PLKILEGHQRGILSLSWCPQDPRLLLSSG---KDNRIICWNPNTGEV 288 (1049)
T ss_pred chhhhcccccceeeeccCCCCchhhhccc---CCCCeeEecCCCceE
Confidence 88888999999999999998855554443 289999999999886
No 99
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.78 E-value=9.6e-19 Score=159.89 Aligned_cols=174 Identities=15% Similarity=0.148 Sum_probs=133.3
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEe-----cCCCCceE
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF-----GGHKDEGY 233 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~h~~~v~ 233 (359)
....+|...++|.+|+|.....|.|++.||+++||++..... .+.+| .+..-.+.
T Consensus 262 ~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~--------------------q~qVik~k~~~g~Rv~~t 321 (641)
T KOG0772|consen 262 YNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKS--------------------QLQVIKTKPAGGKRVPVT 321 (641)
T ss_pred hccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchh--------------------heeEEeeccCCCcccCce
Confidence 455689999999999999989999999999999999987432 12222 12334788
Q ss_pred EEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCC--CeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCC
Q 018235 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSA--SVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS 311 (359)
Q Consensus 234 ~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~--~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~ 311 (359)
..+|++++. +||+|..||.|.+|+.+.. ........-.+|.. .|++|.||++|. +|+|-+.|+++++||+|..++
T Consensus 322 sC~~nrdg~-~iAagc~DGSIQ~W~~~~~-~v~p~~~vk~AH~~g~~Itsi~FS~dg~-~LlSRg~D~tLKvWDLrq~kk 398 (641)
T KOG0772|consen 322 SCAWNRDGK-LIAAGCLDGSIQIWDKGSR-TVRPVMKVKDAHLPGQDITSISFSYDGN-YLLSRGFDDTLKVWDLRQFKK 398 (641)
T ss_pred eeecCCCcc-hhhhcccCCceeeeecCCc-ccccceEeeeccCCCCceeEEEeccccc-hhhhccCCCceeeeecccccc
Confidence 999999999 8999999999999998542 11111123356776 999999999999 999999999999999999977
Q ss_pred ceEEeecC--CCCEEEEEEcCCCCeEEEEeee--cccceEEEEEeCcC
Q 018235 312 ALTSFKAH--NADVNVISWNRCWLAVCWHLEV--MMEHFLFMILDCSR 355 (359)
Q Consensus 312 ~~~~~~~h--~~~V~~i~~s~~~~~l~~~~~~--~~~d~~i~iwd~~~ 355 (359)
++....+. .-+-+.++|+|+.++|+.+... ....+.|.+++..+
T Consensus 399 pL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t 446 (641)
T KOG0772|consen 399 PLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMT 446 (641)
T ss_pred chhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccc
Confidence 77765433 2234567899999999887543 23345677777654
No 100
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.78 E-value=7.1e-18 Score=152.26 Aligned_cols=169 Identities=16% Similarity=0.191 Sum_probs=139.3
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
+.+.+|.++|+++.|+|.+...|.+.|.||+|++-|+.... ...+..+..-....++++++
T Consensus 228 ~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i-------------------~e~v~s~~~d~~~fs~~d~~ 288 (498)
T KOG4328|consen 228 YLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNI-------------------SEEVLSLDTDNIWFSSLDFS 288 (498)
T ss_pred EEeccCCccccceEecCCChhheeeeccCceeeeeeecchh-------------------hHHHhhcCccceeeeecccc
Confidence 45669999999999999998889999999999999998721 23334443344467788999
Q ss_pred CCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCC--C-ceEE
Q 018235 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK--S-ALTS 315 (359)
Q Consensus 239 p~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~--~-~~~~ 315 (359)
.... .++.|+.=|...+||.|+.+.-. ..+.-|...|..|+++|..+.+|||||.|++.+|||+|... . ++..
T Consensus 289 ~e~~-~vl~~~~~G~f~~iD~R~~~s~~---~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~ls 364 (498)
T KOG4328|consen 289 AESR-SVLFGDNVGNFNVIDLRTDGSEY---ENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLS 364 (498)
T ss_pred CCCc-cEEEeecccceEEEEeecCCccc---hhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCccee
Confidence 8887 77778878899999999966533 45667889999999999999999999999999999999762 2 3455
Q ss_pred eecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 316 FKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 316 ~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
...|.-.|++..|+|.+-.|++.+. |..|+|||.+
T Consensus 365 t~~HrrsV~sAyFSPs~gtl~TT~~----D~~IRv~dss 399 (498)
T KOG4328|consen 365 TLPHRRSVNSAYFSPSGGTLLTTCQ----DNEIRVFDSS 399 (498)
T ss_pred cccccceeeeeEEcCCCCceEeecc----CCceEEeecc
Confidence 5779999999999999988888876 8999999984
No 101
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=3.1e-17 Score=141.94 Aligned_cols=165 Identities=19% Similarity=0.302 Sum_probs=130.0
Q ss_pred CCeEE--EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCc
Q 018235 154 TPILQ--LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDE 231 (359)
Q Consensus 154 ~~~~~--~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 231 (359)
+|.+. ..+..|.+.|++++++- .++|||+.|-+|+|||+.. ...+..+..|.+.
T Consensus 30 ~~~l~~lF~~~aH~~sitavAVs~---~~~aSGssDetI~IYDm~k---------------------~~qlg~ll~Hags 85 (362)
T KOG0294|consen 30 KPTLKPLFAFSAHAGSITALAVSG---PYVASGSSDETIHIYDMRK---------------------RKQLGILLSHAGS 85 (362)
T ss_pred ceeeeccccccccccceeEEEecc---eeEeccCCCCcEEEEeccc---------------------hhhhcceeccccc
Confidence 44433 56678999999999964 6999999999999999998 5667788899999
Q ss_pred eEEEEeCCCC-CCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCC
Q 018235 232 GYAIDWNPIT-TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK 310 (359)
Q Consensus 232 v~~l~~sp~~-~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~ 310 (359)
|++|.|.+.. ...|++|+.||.|.+|+... |. ....+.+|+..|++|+.||.+. +-++.+.|+.+|+|++-.+
T Consensus 86 itaL~F~~~~S~shLlS~sdDG~i~iw~~~~---W~-~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~G- 159 (362)
T KOG0294|consen 86 ITALKFYPPLSKSHLLSGSDDGHIIIWRVGS---WE-LLKSLKAHKGQVTDLSIHPSGK-LALSVGGDQVLRTWNLVRG- 159 (362)
T ss_pred eEEEEecCCcchhheeeecCCCcEEEEEcCC---eE-EeeeecccccccceeEecCCCc-eEEEEcCCceeeeehhhcC-
Confidence 9999998654 23799999999999999854 43 2478999999999999999999 9999999999999999887
Q ss_pred CceEEe-ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 311 SALTSF-KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 311 ~~~~~~-~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
+....+ -.+.. ..|.|+|.|..++...+ +.|-+|....
T Consensus 160 r~a~v~~L~~~a--t~v~w~~~Gd~F~v~~~-----~~i~i~q~d~ 198 (362)
T KOG0294|consen 160 RVAFVLNLKNKA--TLVSWSPQGDHFVVSGR-----NKIDIYQLDN 198 (362)
T ss_pred ccceeeccCCcc--eeeEEcCCCCEEEEEec-----cEEEEEeccc
Confidence 322222 22333 33899999997666654 3366665543
No 102
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.78 E-value=6.1e-17 Score=136.86 Aligned_cols=162 Identities=18% Similarity=0.216 Sum_probs=137.4
Q ss_pred cCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCC
Q 018235 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~ 242 (359)
.....++-+.|+..+ ++++.-...|+|.|..+.. .+|+.+++.|.....||.|+|+|+
T Consensus 145 ~~~~e~ne~~w~~~n-d~Fflt~GlG~v~ILsyps---------------------Lkpv~si~AH~snCicI~f~p~Gr 202 (313)
T KOG1407|consen 145 QFKFEVNEISWNNSN-DLFFLTNGLGCVEILSYPS---------------------LKPVQSIKAHPSNCICIEFDPDGR 202 (313)
T ss_pred cccceeeeeeecCCC-CEEEEecCCceEEEEeccc---------------------cccccccccCCcceEEEEECCCCc
Confidence 456678889998666 5655557789999999886 799999999999999999999999
Q ss_pred CeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCC
Q 018235 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNAD 322 (359)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~ 322 (359)
+||+|+.|-.+.|||+.. - +..+.+..+.-+|..|+||.+|+ +||++|.|..|-|-++.++ ..+..++ +.++
T Consensus 203 -yfA~GsADAlvSLWD~~E-L---iC~R~isRldwpVRTlSFS~dg~-~lASaSEDh~IDIA~vetG-d~~~eI~-~~~~ 274 (313)
T KOG1407|consen 203 -YFATGSADALVSLWDVDE-L---ICERCISRLDWPVRTLSFSHDGR-MLASASEDHFIDIAEVETG-DRVWEIP-CEGP 274 (313)
T ss_pred -eEeeccccceeeccChhH-h---hhheeeccccCceEEEEeccCcc-eeeccCccceEEeEecccC-CeEEEee-ccCC
Confidence 999999999999999976 2 23477888999999999999999 9999999999999999998 6777775 7889
Q ss_pred EEEEEEcCCCCeEEEEeeec-----ccceEEEEEeCc
Q 018235 323 VNVISWNRCWLAVCWHLEVM-----MEHFLFMILDCS 354 (359)
Q Consensus 323 V~~i~~s~~~~~l~~~~~~~-----~~d~~i~iwd~~ 354 (359)
.+.++|+|...+|++.+.-. ++.+.++++-..
T Consensus 275 t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 275 TFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred ceeEEecCCCceeeEEecCCCCccccccceeEEecCC
Confidence 99999999999999886531 223678877543
No 103
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.78 E-value=4e-18 Score=149.87 Aligned_cols=210 Identities=17% Similarity=0.193 Sum_probs=160.9
Q ss_pred eecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCeEEEEEecCCCceeeEEEe
Q 018235 95 GTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAM 174 (359)
Q Consensus 95 GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~ 174 (359)
.|.++++-++.|+||.++ ...+...+.+|.|.|+.|++.
T Consensus 80 s~~aSGs~DG~VkiWnls-----------------------------------------qR~~~~~f~AH~G~V~Gi~v~ 118 (433)
T KOG0268|consen 80 STVASGSCDGEVKIWNLS-----------------------------------------QRECIRTFKAHEGLVRGICVT 118 (433)
T ss_pred hhhhccccCceEEEEehh-----------------------------------------hhhhhheeecccCceeeEEec
Confidence 455566689999999995 334556788999999999998
Q ss_pred CCCCcEEEEEeCCCcEEEEECCCCcccc-cccccc-----------ccCCCCCC-----CCCCCcEEecCCCCceEEEEe
Q 018235 175 TQNPHICASWADTGHVQVWDLRSHLNAL-AESETI-----------VGQGAPQV-----SNQSPLVKFGGHKDEGYAIDW 237 (359)
Q Consensus 175 p~~~~~lat~s~dg~V~iwd~~~~~~~~-~~~~~~-----------~~~~~~~~-----~~~~~~~~~~~h~~~v~~l~~ 237 (359)
. .-++|+++|.+|+.|-+....... ...... .......+ ....|+..+..-.+.+.++.|
T Consensus 119 ~---~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkf 195 (433)
T KOG0268|consen 119 Q---TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKF 195 (433)
T ss_pred c---cceEEecCCcceeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEec
Confidence 7 468889999999999876531110 000000 00000000 345688888887889999999
Q ss_pred CCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEee
Q 018235 238 NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK 317 (359)
Q Consensus 238 sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~ 317 (359)
+|....+|++|..|+.|.|||+++ ++++ +... -+..-+.|+|+| +...|.+++.|..+..+|+|....++....
T Consensus 196 NpvETsILas~~sDrsIvLyD~R~-~~Pl---~KVi-~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v~~ 269 (433)
T KOG0268|consen 196 NPVETSILASCASDRSIVLYDLRQ-ASPL---KKVI-LTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNVHK 269 (433)
T ss_pred CCCcchheeeeccCCceEEEeccc-CCcc---ceee-eeccccceecCc-cccceeeccccccceehhhhhhcccchhhc
Confidence 999998999999999999999998 4444 1111 234557799999 666999999999999999999877888889
Q ss_pred cCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 318 AHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 318 ~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
.|.+.|..+.|||.|+-++.+.- |.+|+|+..+.+.-
T Consensus 270 dhvsAV~dVdfsptG~Efvsgsy----DksIRIf~~~~~~S 306 (433)
T KOG0268|consen 270 DHVSAVMDVDFSPTGQEFVSGSY----DKSIRIFPVNHGHS 306 (433)
T ss_pred ccceeEEEeccCCCcchhccccc----cceEEEeecCCCcc
Confidence 99999999999999998887765 99999999887653
No 104
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.77 E-value=1e-17 Score=156.98 Aligned_cols=177 Identities=21% Similarity=0.289 Sum_probs=141.7
Q ss_pred EEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEec-CCCCceEEE
Q 018235 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG-GHKDEGYAI 235 (359)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l 235 (359)
+..++..|...|.|+++-.....++|||+-|+.|.|||+......+- ..+ ...+...+. |+...+|+|
T Consensus 109 c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~-----~s~------n~~t~~sl~sG~k~siYSL 177 (735)
T KOG0308|consen 109 CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLV-----ASF------NNVTVNSLGSGPKDSIYSL 177 (735)
T ss_pred hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhh-----hhc------cccccccCCCCCccceeee
Confidence 33455679999999999444448999999999999999997422110 000 123333444 899999999
Q ss_pred EeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEE
Q 018235 236 DWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS 315 (359)
Q Consensus 236 ~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~ 315 (359)
+.++.+. .|++|+..+.|++||.++..+ + ..+.||+..|.++-.+++|. .++|+|.||+|++||++.. +++.+
T Consensus 178 A~N~t~t-~ivsGgtek~lr~wDprt~~k-i---mkLrGHTdNVr~ll~~dDGt-~~ls~sSDgtIrlWdLgqQ-rCl~T 250 (735)
T KOG0308|consen 178 AMNQTGT-IIVSGGTEKDLRLWDPRTCKK-I---MKLRGHTDNVRVLLVNDDGT-RLLSASSDGTIRLWDLGQQ-RCLAT 250 (735)
T ss_pred ecCCcce-EEEecCcccceEEeccccccc-e---eeeeccccceEEEEEcCCCC-eEeecCCCceEEeeecccc-ceeee
Confidence 9999997 999999999999999998444 3 46789999999999999999 9999999999999999987 89999
Q ss_pred eecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 316 FKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 316 ~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
+..|...|+++.-+|.=..+..+.+ ++.|..=+.+.
T Consensus 251 ~~vH~e~VWaL~~~~sf~~vYsG~r----d~~i~~Tdl~n 286 (735)
T KOG0308|consen 251 YIVHKEGVWALQSSPSFTHVYSGGR----DGNIYRTDLRN 286 (735)
T ss_pred EEeccCceEEEeeCCCcceEEecCC----CCcEEecccCC
Confidence 9999999999999987777766665 66666555544
No 105
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=2.1e-16 Score=137.01 Aligned_cols=171 Identities=13% Similarity=0.184 Sum_probs=134.0
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEe--CCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCc
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWA--DTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDE 231 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s--~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 231 (359)
.++...++..++-.|..++|..+...++ .++ .|.+|+..++.. .+.++.|.||...
T Consensus 45 ~g~~~~ti~skkyG~~~~~Fth~~~~~i-~sStk~d~tIryLsl~d---------------------NkylRYF~GH~~~ 102 (311)
T KOG1446|consen 45 SGKQVKTINSKKYGVDLACFTHHSNTVI-HSSTKEDDTIRYLSLHD---------------------NKYLRYFPGHKKR 102 (311)
T ss_pred CCceeeEeecccccccEEEEecCCceEE-EccCCCCCceEEEEeec---------------------CceEEEcCCCCce
Confidence 4444455556677889999987763344 334 488999999987 6889999999999
Q ss_pred eEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCC-C
Q 018235 232 GYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG-K 310 (359)
Q Consensus 232 v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~-~ 310 (359)
|.+|+.+|-+. .++|++.|++|++||+|...... .+ +...-..++|.|.|- +||++.....|+|||+|.. +
T Consensus 103 V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~~cqg----~l--~~~~~pi~AfDp~GL-ifA~~~~~~~IkLyD~Rs~dk 174 (311)
T KOG1446|consen 103 VNSLSVSPKDD-TFLSSSLDKTVRLWDLRVKKCQG----LL--NLSGRPIAAFDPEGL-IFALANGSELIKLYDLRSFDK 174 (311)
T ss_pred EEEEEecCCCC-eEEecccCCeEEeeEecCCCCce----EE--ecCCCcceeECCCCc-EEEEecCCCeEEEEEecccCC
Confidence 99999999997 99999999999999999633221 11 223334579999998 9999988889999999987 4
Q ss_pred CceEEee---cCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 311 SALTSFK---AHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 311 ~~~~~~~---~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
.|..++. .-...++.|.|+|+|++++.+.. ...+.+.|.-+|.+
T Consensus 175 gPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~----~s~~~~lDAf~G~~ 221 (311)
T KOG1446|consen 175 GPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN----ASFIYLLDAFDGTV 221 (311)
T ss_pred CCceeEccCCCCccceeeeEEcCCCCEEEEEeC----CCcEEEEEccCCcE
Confidence 5666653 44678999999999999998876 67788888877764
No 106
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.76 E-value=3.5e-17 Score=140.93 Aligned_cols=158 Identities=20% Similarity=0.335 Sum_probs=128.5
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
.....|.++|.+++|+.+| ..+++|+.|+.+++||+.+ ..+..+..|.++|..+.|-
T Consensus 66 ka~~~~~~PvL~v~Wsddg-skVf~g~~Dk~~k~wDL~S----------------------~Q~~~v~~Hd~pvkt~~wv 122 (347)
T KOG0647|consen 66 KAQQSHDGPVLDVCWSDDG-SKVFSGGCDKQAKLWDLAS----------------------GQVSQVAAHDAPVKTCHWV 122 (347)
T ss_pred hhhhccCCCeEEEEEccCC-ceEEeeccCCceEEEEccC----------------------CCeeeeeecccceeEEEEe
Confidence 4456799999999999999 8899999999999999987 3567788999999999996
Q ss_pred CCCC-CeEEEEcCCCcEEEEecCCCCcc----------------------------------------------------
Q 018235 239 PITT-GRLVTGDCNSCIYLWEPASDATW---------------------------------------------------- 265 (359)
Q Consensus 239 p~~~-~~l~sgs~dg~I~lwd~~~~~~~---------------------------------------------------- 265 (359)
+... ..|+|||-|.+|+.||+|+....
T Consensus 123 ~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R 202 (347)
T KOG0647|consen 123 PGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTR 202 (347)
T ss_pred cCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceee
Confidence 5332 38999999999999999864100
Q ss_pred ------------------------e-----ecCccccCCC---------CCeEEEEecCCCCCEEEEEeCCCcEEEEECC
Q 018235 266 ------------------------N-----VDPNPFIGHS---------ASVEDLQWSPTEPDVFASCSVDGHIAIWDTR 307 (359)
Q Consensus 266 ------------------------~-----~~~~~~~~h~---------~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r 307 (359)
+ ....+|..|. ..|++|+|+|... .|+|++.||++.+||-.
T Consensus 203 ~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hg-tlvTaGsDGtf~FWDkd 281 (347)
T KOG0647|consen 203 CVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHG-TLVTAGSDGTFSFWDKD 281 (347)
T ss_pred EEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccc-eEEEecCCceEEEecch
Confidence 0 0012233444 2578899999888 99999999999999988
Q ss_pred CCCCceEEeecCCCCEEEEEEcCCCCeEEEEeee
Q 018235 308 VGKSALTSFKAHNADVNVISWNRCWLAVCWHLEV 341 (359)
Q Consensus 308 ~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~ 341 (359)
.. ..+.+...|..+|.|.+||.+|.++++.+..
T Consensus 282 ar-~kLk~s~~~~qpItcc~fn~~G~ifaYA~gY 314 (347)
T KOG0647|consen 282 AR-TKLKTSETHPQPITCCSFNRNGSIFAYALGY 314 (347)
T ss_pred hh-hhhhccCcCCCccceeEecCCCCEEEEEeec
Confidence 76 6677778899999999999999999987654
No 107
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.76 E-value=1.2e-16 Score=143.46 Aligned_cols=153 Identities=18% Similarity=0.261 Sum_probs=127.1
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecC--CCCceEEEE
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGG--HKDEGYAID 236 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~ 236 (359)
...+.|.++|+.+..+|.| .+|.+++.||+..+.|++. +..+..... ..-++++.+
T Consensus 297 ~~~~~h~~~V~~ls~h~tg-eYllsAs~d~~w~Fsd~~~---------------------g~~lt~vs~~~s~v~~ts~~ 354 (506)
T KOG0289|consen 297 TSSRPHEEPVTGLSLHPTG-EYLLSASNDGTWAFSDISS---------------------GSQLTVVSDETSDVEYTSAA 354 (506)
T ss_pred cccccccccceeeeeccCC-cEEEEecCCceEEEEEccC---------------------CcEEEEEeeccccceeEEee
Confidence 3456899999999999999 7888999999999999987 344333322 223689999
Q ss_pred eCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe
Q 018235 237 WNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF 316 (359)
Q Consensus 237 ~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~ 316 (359)
|+|+|- +|++|..||.|+|||+.++.. ...|.+|+++|..|+|+-+|- +||+++.|+.|++||+|.. +...++
T Consensus 355 fHpDgL-ifgtgt~d~~vkiwdlks~~~----~a~Fpght~~vk~i~FsENGY-~Lat~add~~V~lwDLRKl-~n~kt~ 427 (506)
T KOG0289|consen 355 FHPDGL-IFGTGTPDGVVKIWDLKSQTN----VAKFPGHTGPVKAISFSENGY-WLATAADDGSVKLWDLRKL-KNFKTI 427 (506)
T ss_pred EcCCce-EEeccCCCceEEEEEcCCccc----cccCCCCCCceeEEEeccCce-EEEEEecCCeEEEEEehhh-ccccee
Confidence 999998 999999999999999987442 267999999999999999997 9999999999999999987 455555
Q ss_pred e-cCCCCEEEEEEcCCCCeEEEEee
Q 018235 317 K-AHNADVNVISWNRCWLAVCWHLE 340 (359)
Q Consensus 317 ~-~h~~~V~~i~~s~~~~~l~~~~~ 340 (359)
. .....|++++|...|.+++....
T Consensus 428 ~l~~~~~v~s~~fD~SGt~L~~~g~ 452 (506)
T KOG0289|consen 428 QLDEKKEVNSLSFDQSGTYLGIAGS 452 (506)
T ss_pred eccccccceeEEEcCCCCeEEeecc
Confidence 2 23347999999999999988744
No 108
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=1.5e-18 Score=164.15 Aligned_cols=166 Identities=20% Similarity=0.348 Sum_probs=148.1
Q ss_pred EEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCC
Q 018235 160 RKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (359)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp 239 (359)
.+..|...|++++.-... ..+++|+.+-.+.+|.+.. ..++..|.+|..+|-+|.|++
T Consensus 23 ~~~~hsaav~~lk~~~s~-r~~~~Gg~~~k~~L~~i~k---------------------p~~i~S~~~hespIeSl~f~~ 80 (825)
T KOG0267|consen 23 EFVAHSAAVGCLKIRKSS-RSLVTGGEDEKVNLWAIGK---------------------PNAITSLTGHESPIESLTFDT 80 (825)
T ss_pred hhhhhhhhhceeeeeccc-eeeccCCCceeeccccccC---------------------CchhheeeccCCcceeeecCc
Confidence 445799999999985555 7899999999999999987 456667999999999999999
Q ss_pred CCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecC
Q 018235 240 ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAH 319 (359)
Q Consensus 240 ~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h 319 (359)
... +|++|+.+|+|++||+.. .+.+ +++.+|...+..|+|+|.+. ++|+|+.|+-+++||+|.. .|...+.+|
T Consensus 81 ~E~-LlaagsasgtiK~wDlee-Ak~v---rtLtgh~~~~~sv~f~P~~~-~~a~gStdtd~~iwD~Rk~-Gc~~~~~s~ 153 (825)
T KOG0267|consen 81 SER-LLAAGSASGTIKVWDLEE-AKIV---RTLTGHLLNITSVDFHPYGE-FFASGSTDTDLKIWDIRKK-GCSHTYKSH 153 (825)
T ss_pred chh-hhcccccCCceeeeehhh-hhhh---hhhhccccCcceeeeccceE-Eeccccccccceehhhhcc-CceeeecCC
Confidence 987 999999999999999986 4443 78999999999999999999 8899999999999999976 789999999
Q ss_pred CCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 320 NADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 320 ~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
...|+++.|+|+|.+++.+.. |..++|||...|++
T Consensus 154 ~~vv~~l~lsP~Gr~v~~g~e----d~tvki~d~~agk~ 188 (825)
T KOG0267|consen 154 TRVVDVLRLSPDGRWVASGGE----DNTVKIWDLTAGKL 188 (825)
T ss_pred cceeEEEeecCCCceeeccCC----cceeeeeccccccc
Confidence 999999999999999987765 89999999988764
No 109
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.75 E-value=1.7e-16 Score=136.06 Aligned_cols=161 Identities=19% Similarity=0.296 Sum_probs=129.3
Q ss_pred CeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCC--CCce
Q 018235 155 PILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGH--KDEG 232 (359)
Q Consensus 155 ~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v 232 (359)
..+..++++|..+|..|+|...+..+||+.+.||.|++||++... ....++... ..+.
T Consensus 186 ~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~le--------------------HSTIIYE~p~~~~pL 245 (364)
T KOG0290|consen 186 GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLE--------------------HSTIIYEDPSPSTPL 245 (364)
T ss_pred cceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccc--------------------cceEEecCCCCCCcc
Confidence 345689999999999999999888899999999999999999831 112223322 3478
Q ss_pred EEEEeCCCCCCeEEEEcCCC-cEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCC
Q 018235 233 YAIDWNPITTGRLVTGDCNS-CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS 311 (359)
Q Consensus 233 ~~l~~sp~~~~~l~sgs~dg-~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~ 311 (359)
.-|+|+++..+++||-..|+ .|.|.|+|.+..++ ..+.+|++.|+.|+|.|...+.|+||+.|..+-|||+.....
T Consensus 246 lRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpv---a~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~ 322 (364)
T KOG0290|consen 246 LRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPV---ARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR 322 (364)
T ss_pred eeeccCcCCchHHhhhhcCCceEEEEEecCCCcce---ehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccc
Confidence 89999999998999877665 58999999876665 789999999999999999999999999999999999987522
Q ss_pred -----ceEEeecCCCCEEEEEEcCC-CCeEEEEe
Q 018235 312 -----ALTSFKAHNADVNVISWNRC-WLAVCWHL 339 (359)
Q Consensus 312 -----~~~~~~~h~~~V~~i~~s~~-~~~l~~~~ 339 (359)
++..+. ..+.||.|.|++. +.+++...
T Consensus 323 ~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~ 355 (364)
T KOG0290|consen 323 ENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICF 355 (364)
T ss_pred cCCCCchhhhh-ccceeeeeeecccCCCEEEEEe
Confidence 343344 5678999999964 45665554
No 110
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.75 E-value=5e-18 Score=149.26 Aligned_cols=161 Identities=20% Similarity=0.217 Sum_probs=132.7
Q ss_pred CCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCe
Q 018235 165 QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGR 244 (359)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~ 244 (359)
...|.+++|+|-...+|++|+.|+.|.|||++. ..|+..+.- ...-+.|+|+|.+- .
T Consensus 187 ~Dti~svkfNpvETsILas~~sDrsIvLyD~R~---------------------~~Pl~KVi~-~mRTN~IswnPeaf-n 243 (433)
T KOG0268|consen 187 ADSISSVKFNPVETSILASCASDRSIVLYDLRQ---------------------ASPLKKVIL-TMRTNTICWNPEAF-N 243 (433)
T ss_pred CCceeEEecCCCcchheeeeccCCceEEEeccc---------------------CCccceeee-eccccceecCcccc-c
Confidence 467899999999989999999999999999998 455554422 33456899999554 8
Q ss_pred EEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEE
Q 018235 245 LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVN 324 (359)
Q Consensus 245 l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~ 324 (359)
|++|+.|..++.+|++....++ ..+.+|.+.|.+|.|||.|. -|++||.|++||||..+.+...-.-.......|.
T Consensus 244 F~~a~ED~nlY~~DmR~l~~p~---~v~~dhvsAV~dVdfsptG~-EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~ 319 (433)
T KOG0268|consen 244 FVAANEDHNLYTYDMRNLSRPL---NVHKDHVSAVMDVDFSPTGQ-EFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVF 319 (433)
T ss_pred eeeccccccceehhhhhhcccc---hhhcccceeEEEeccCCCcc-hhccccccceEEEeecCCCcchhhhhHhhhheee
Confidence 9999999999999999865554 77899999999999999999 9999999999999999987221111133455699
Q ss_pred EEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 325 VISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 325 ~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
|+.|+.+.++++.+.. ++.|++|.....
T Consensus 320 ~Vk~S~Dskyi~SGSd----d~nvRlWka~As 347 (433)
T KOG0268|consen 320 CVKYSMDSKYIISGSD----DGNVRLWKAKAS 347 (433)
T ss_pred EEEEeccccEEEecCC----Ccceeeeecchh
Confidence 9999999999998876 899999987653
No 111
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.75 E-value=1.8e-16 Score=152.87 Aligned_cols=162 Identities=15% Similarity=0.179 Sum_probs=130.1
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
..+.+|.+.|..|.|+..+ +|.+++.|.+|+||++.. ..++.+| .|.+.|+|++|+
T Consensus 363 ~ef~GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~---------------------~~CL~~F-~HndfVTcVaFn 418 (712)
T KOG0283|consen 363 CEFKGHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGR---------------------KECLKVF-SHNDFVTCVAFN 418 (712)
T ss_pred hhhhccchhheecccccCC--eeEeccccccEEeecCCC---------------------cceeeEE-ecCCeeEEEEec
Confidence 3556999999999999876 888999999999999987 6788888 589999999999
Q ss_pred CCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe--
Q 018235 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF-- 316 (359)
Q Consensus 239 p~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~-- 316 (359)
|....+|+||+-||.|+||++.. .+.+ -...-...|++++|.|+|+ ..+.|+-+|.+++|+++.. +....+
T Consensus 419 PvDDryFiSGSLD~KvRiWsI~d-~~Vv----~W~Dl~~lITAvcy~PdGk-~avIGt~~G~C~fY~t~~l-k~~~~~~I 491 (712)
T KOG0283|consen 419 PVDDRYFISGSLDGKVRLWSISD-KKVV----DWNDLRDLITAVCYSPDGK-GAVIGTFNGYCRFYDTEGL-KLVSDFHI 491 (712)
T ss_pred ccCCCcEeecccccceEEeecCc-CeeE----eehhhhhhheeEEeccCCc-eEEEEEeccEEEEEEccCC-eEEEeeeE
Confidence 99888999999999999999965 3322 1222348899999999999 8999999999999999986 332222
Q ss_pred ecC------CCCEEEEEEcCCCC-eEEEEeeecccceEEEEEeCcC
Q 018235 317 KAH------NADVNVISWNRCWL-AVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 317 ~~h------~~~V~~i~~s~~~~-~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
..| ...|+.+.|.|... -++.+.. |..|||+|++.
T Consensus 492 ~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSn----DSrIRI~d~~~ 533 (712)
T KOG0283|consen 492 RLHNKKKKQGKRITGLQFFPGDPDEVLVTSN----DSRIRIYDGRD 533 (712)
T ss_pred eeccCccccCceeeeeEecCCCCCeEEEecC----CCceEEEeccc
Confidence 111 22799999998665 2444444 78899999854
No 112
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.74 E-value=7.2e-17 Score=136.85 Aligned_cols=185 Identities=15% Similarity=0.200 Sum_probs=139.9
Q ss_pred EEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCcc--cccccccccc-------------------------
Q 018235 158 QLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLN--ALAESETIVG------------------------- 210 (359)
Q Consensus 158 ~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~--~~~~~~~~~~------------------------- 210 (359)
.-+..+|.|.|+++...-.. ..++||+.|.++++||+..... .+........
T Consensus 45 lGty~GHtGavW~~Did~~s-~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~ 123 (327)
T KOG0643|consen 45 LGTYDGHTGAVWCCDIDWDS-KHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVS 123 (327)
T ss_pred eeeecCCCceEEEEEecCCc-ceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEE
Confidence 35677999999999999887 7899999999999999987321 1111100000
Q ss_pred -----CCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEec
Q 018235 211 -----QGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWS 285 (359)
Q Consensus 211 -----~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~s 285 (359)
..........|+..+..+...++..-|.|.+. .|++|..||.|.+||.+++...+ ..-..|...|++++++
T Consensus 124 ~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~-~ii~Ghe~G~is~~da~~g~~~v---~s~~~h~~~Ind~q~s 199 (327)
T KOG0643|consen 124 VFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGE-TIIAGHEDGSISIYDARTGKELV---DSDEEHSSKINDLQFS 199 (327)
T ss_pred EEEccCChhhhcccCceEEecCCccceeeeeecccCC-EEEEecCCCcEEEEEcccCceee---echhhhcccccccccc
Confidence 00001124567888888889999999999999 99999999999999999854443 4556799999999999
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCCCceE---------------------------------------------------
Q 018235 286 PTEPDVFASCSVDGHIAIWDTRVGKSALT--------------------------------------------------- 314 (359)
Q Consensus 286 p~~~~~las~s~Dg~I~iwD~r~~~~~~~--------------------------------------------------- 314 (359)
|+.. +|+++|.|.+-++||.++. ..+.
T Consensus 200 ~d~T-~FiT~s~Dttakl~D~~tl-~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~e 277 (327)
T KOG0643|consen 200 RDRT-YFITGSKDTTAKLVDVRTL-EVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFE 277 (327)
T ss_pred CCcc-eEEecccCccceeeeccce-eeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHH
Confidence 9998 9999999999999999865 2111
Q ss_pred ----EeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeC
Q 018235 315 ----SFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDC 353 (359)
Q Consensus 315 ----~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~ 353 (359)
.+++|=++||+++|+|+|+..+.+.. |+.|++...
T Consensus 278 EEigrvkGHFGPINsvAfhPdGksYsSGGE----DG~VR~h~F 316 (327)
T KOG0643|consen 278 EEIGRVKGHFGPINSVAFHPDGKSYSSGGE----DGYVRLHHF 316 (327)
T ss_pred HHhccccccccCcceeEECCCCcccccCCC----CceEEEEEe
Confidence 12347778888999998887765544 888887643
No 113
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.74 E-value=1.5e-17 Score=147.68 Aligned_cols=130 Identities=25% Similarity=0.477 Sum_probs=116.2
Q ss_pred EEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCc---ceecCccccCCCCCeEEEEecCCCCCEEEEEeCCC
Q 018235 223 VKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDAT---WNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG 299 (359)
Q Consensus 223 ~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~---~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg 299 (359)
-.+.||+++|..++|+|.+...|||||.|.+|.||++...+. ...+...+.+|...|.-|+|||.-.++|+|++.|.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 357899999999999999988999999999999999976432 11123568899999999999999999999999999
Q ss_pred cEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 300 HIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 300 ~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
+|.||++.++ ..+.++. |...|.+++||.+|.+++..+. |..|+|||+++|++
T Consensus 155 ~v~iWnv~tg-eali~l~-hpd~i~S~sfn~dGs~l~Ttck----DKkvRv~dpr~~~~ 207 (472)
T KOG0303|consen 155 TVSIWNVGTG-EALITLD-HPDMVYSMSFNRDGSLLCTTCK----DKKVRVIDPRRGTV 207 (472)
T ss_pred eEEEEeccCC-ceeeecC-CCCeEEEEEeccCCceeeeecc----cceeEEEcCCCCcE
Confidence 9999999998 7777777 9999999999999999999998 99999999999986
No 114
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1.9e-15 Score=131.13 Aligned_cols=171 Identities=15% Similarity=0.090 Sum_probs=133.5
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceE
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (359)
+.+...-+.+|...|++|+.+|-+ ..+.+++.|++|++||++. .++...+..... .
T Consensus 89 dNkylRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~---------------------~~cqg~l~~~~~--p 144 (311)
T KOG1446|consen 89 DNKYLRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRV---------------------KKCQGLLNLSGR--P 144 (311)
T ss_pred cCceEEEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecC---------------------CCCceEEecCCC--c
Confidence 445557788999999999999998 8999999999999999996 344333332222 2
Q ss_pred EEEeCCCCCCeEEEEcCCCcEEEEecCCCCc-ceecCcccc---CCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCC
Q 018235 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDAT-WNVDPNPFI---GHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG 309 (359)
Q Consensus 234 ~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~-~~~~~~~~~---~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~ 309 (359)
..++.|.|- ++|+|.....|+|||+|.-++ +- .+|. +.....+.|.|||+|+ .++.+...+.+++.|.-.+
T Consensus 145 i~AfDp~GL-ifA~~~~~~~IkLyD~Rs~dkgPF---~tf~i~~~~~~ew~~l~FS~dGK-~iLlsT~~s~~~~lDAf~G 219 (311)
T KOG1446|consen 145 IAAFDPEGL-IFALANGSELIKLYDLRSFDKGPF---TTFSITDNDEAEWTDLEFSPDGK-SILLSTNASFIYLLDAFDG 219 (311)
T ss_pred ceeECCCCc-EEEEecCCCeEEEEEecccCCCCc---eeEccCCCCccceeeeEEcCCCC-EEEEEeCCCcEEEEEccCC
Confidence 578999997 888888777999999997533 21 2222 4467889999999999 7777888899999999988
Q ss_pred CCceEEeecCCCCE---EEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 310 KSALTSFKAHNADV---NVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 310 ~~~~~~~~~h~~~V---~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
..+.++..+...- -..+|.|++++++.+.. |+.|.+|+.++|..
T Consensus 220 -~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~----dg~i~vw~~~tg~~ 266 (311)
T KOG1446|consen 220 -TVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSD----DGTIHVWNLETGKK 266 (311)
T ss_pred -cEeeeEeeccCCCCcceeEEECCCCcEEEEecC----CCcEEEEEcCCCcE
Confidence 5666775554322 46789999999998876 89999999988864
No 115
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=1e-15 Score=132.31 Aligned_cols=184 Identities=15% Similarity=0.289 Sum_probs=132.1
Q ss_pred CCeEEEEEecCCCceeeEEEeCCC-CcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCce
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQN-PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEG 232 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~-~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 232 (359)
+=.+......|.+.|.+|.|.+.. ..++|+++.|++|.||.-... .....+ .......++......|
T Consensus 48 ~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~--~~~~~~----------~~Wv~~ttl~DsrssV 115 (361)
T KOG2445|consen 48 TWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEK--SEEAHG----------RRWVRRTTLVDSRSSV 115 (361)
T ss_pred ceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeeccc--cccccc----------ceeEEEEEeecCCcce
Confidence 444567788999999999996533 489999999999999976421 111100 0233455666667778
Q ss_pred EEEEeCCCCCC-eEEEEcCCCcEEEEecCCC-------------------------------------------------
Q 018235 233 YAIDWNPITTG-RLVTGDCNSCIYLWEPASD------------------------------------------------- 262 (359)
Q Consensus 233 ~~l~~sp~~~~-~l~sgs~dg~I~lwd~~~~------------------------------------------------- 262 (359)
+.+.|.|..-| .||+++.||.++||+.-..
T Consensus 116 ~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a 195 (361)
T KOG2445|consen 116 TDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDA 195 (361)
T ss_pred eEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCC
Confidence 88888776554 5777778888888765321
Q ss_pred --------------C-cceecCccccCCCCCeEEEEecCCC---CCEEEEEeCCCcEEEEECCCCC--------------
Q 018235 263 --------------A-TWNVDPNPFIGHSASVEDLQWSPTE---PDVFASCSVDGHIAIWDTRVGK-------------- 310 (359)
Q Consensus 263 --------------~-~~~~~~~~~~~h~~~V~~v~~sp~~---~~~las~s~Dg~I~iwD~r~~~-------------- 310 (359)
+ +|. ....+.+|+.+|++|+|.|+- -++||+++.|| |+||.++...
T Consensus 196 ~~~~~~~Iye~~e~~rKw~-kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~ 273 (361)
T KOG2445|consen 196 PHLNKVKIYEYNENGRKWL-KVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLM 273 (361)
T ss_pred ccccceEEEEecCCcceee-eehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCc
Confidence 1 111 123455889999999999973 24899999999 9999998410
Q ss_pred -----CceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 311 -----SALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 311 -----~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
..+..+..|++.|+.++||-.|..|..+.. |+++|+|...-
T Consensus 274 ~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGd----DG~VRLWkany 319 (361)
T KOG2445|consen 274 TDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGD----DGCVRLWKANY 319 (361)
T ss_pred cccceEEeeeccCCCCceEEEEEeeeeeEEeecCC----Cceeeehhhhh
Confidence 122335789999999999999999887766 99999998653
No 116
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.72 E-value=1.5e-16 Score=136.61 Aligned_cols=177 Identities=20% Similarity=0.243 Sum_probs=137.6
Q ss_pred ecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCC---cEEecCCCCceEEEEeC
Q 018235 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSP---LVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~h~~~v~~l~~s 238 (359)
..|.|.||.+.+.+....++.+|+.||.|.+||+...... +...... +..+ ...-.+|.-.|..+.|-
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~-e~s~li~--------k~~c~v~~~h~~~Hky~iss~~Wy 110 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDY-EASGLIA--------KHKCIVAKQHENGHKYAISSAIWY 110 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccch-hhcccee--------heeeeccccCCccceeeeeeeEEe
Confidence 3799999999999877789999999999999999862210 0000000 0011 11224677789999999
Q ss_pred CCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCC--CCEEEEEeCCCcEEEEECCCCCCceEEe
Q 018235 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTE--PDVFASCSVDGHIAIWDTRVGKSALTSF 316 (359)
Q Consensus 239 p~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~--~~~las~s~Dg~I~iwD~r~~~~~~~~~ 316 (359)
|...|+|.|++.|.++++||.++... . ..|. -...|+.-+|||-. ..++|+|..+-.|++.|+.++ ...+++
T Consensus 111 P~DtGmFtssSFDhtlKVWDtnTlQ~-a---~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG-s~sH~L 184 (397)
T KOG4283|consen 111 PIDTGMFTSSSFDHTLKVWDTNTLQE-A---VDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG-SFSHTL 184 (397)
T ss_pred eecCceeecccccceEEEeeccccee-e---EEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCC-cceeee
Confidence 99999999999999999999987332 2 1232 45678888888853 248888899999999999998 788899
Q ss_pred ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 317 KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 317 ~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
.+|...|.++.|+|...+++.... -|+.+++||+++.
T Consensus 185 sGHr~~vlaV~Wsp~~e~vLatgs---aDg~irlWDiRra 221 (397)
T KOG4283|consen 185 SGHRDGVLAVEWSPSSEWVLATGS---ADGAIRLWDIRRA 221 (397)
T ss_pred ccccCceEEEEeccCceeEEEecC---CCceEEEEEeecc
Confidence 999999999999999998877654 3999999999874
No 117
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.72 E-value=1.7e-16 Score=149.82 Aligned_cols=155 Identities=25% Similarity=0.316 Sum_probs=133.8
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
..+.+|++.|.++.....+ .++|||-|.++++|.... ...++.+|+..|+++..-
T Consensus 95 ~~LkgH~snVC~ls~~~~~--~~iSgSWD~TakvW~~~~-----------------------l~~~l~gH~asVWAv~~l 149 (745)
T KOG0301|consen 95 YTLKGHKSNVCSLSIGEDG--TLISGSWDSTAKVWRIGE-----------------------LVYSLQGHTASVWAVASL 149 (745)
T ss_pred hhhhccccceeeeecCCcC--ceEecccccceEEecchh-----------------------hhcccCCcchheeeeeec
Confidence 4667999999999988877 389999999999998765 345689999999999998
Q ss_pred CCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeec
Q 018235 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA 318 (359)
Q Consensus 239 p~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~ 318 (359)
|.+ .++||+.|.+|++|.- ++.+ ++|.+|+..|..+++-|.+. |+||+.||.|++|++. + .++..+.+
T Consensus 150 ~e~--~~vTgsaDKtIklWk~---~~~l---~tf~gHtD~VRgL~vl~~~~--flScsNDg~Ir~w~~~-g-e~l~~~~g 217 (745)
T KOG0301|consen 150 PEN--TYVTGSADKTIKLWKG---GTLL---KTFSGHTDCVRGLAVLDDSH--FLSCSNDGSIRLWDLD-G-EVLLEMHG 217 (745)
T ss_pred CCC--cEEeccCcceeeeccC---Cchh---hhhccchhheeeeEEecCCC--eEeecCCceEEEEecc-C-ceeeeeec
Confidence 887 7999999999999975 3343 78999999999999999875 9999999999999994 4 78999999
Q ss_pred CCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 319 HNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 319 h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
|.+-|.+++..+.+..++.... |++++||+..
T Consensus 218 htn~vYsis~~~~~~~Ivs~gE----DrtlriW~~~ 249 (745)
T KOG0301|consen 218 HTNFVYSISMALSDGLIVSTGE----DRTLRIWKKD 249 (745)
T ss_pred cceEEEEEEecCCCCeEEEecC----CceEEEeecC
Confidence 9999999997777777776655 9999999754
No 118
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.72 E-value=3.3e-16 Score=141.71 Aligned_cols=162 Identities=20% Similarity=0.200 Sum_probs=135.5
Q ss_pred EEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCC
Q 018235 160 RKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (359)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp 239 (359)
.+.+|.+.|.+++|--.. +-+.+++.|..|++|++.. ...+.++-||.+.|.+|+-..
T Consensus 239 ~~~ghr~~V~~L~fr~gt-~~lys~s~Drsvkvw~~~~---------------------~s~vetlyGHqd~v~~IdaL~ 296 (479)
T KOG0299|consen 239 VFKGHRGAVSSLAFRKGT-SELYSASADRSVKVWSIDQ---------------------LSYVETLYGHQDGVLGIDALS 296 (479)
T ss_pred cccccccceeeeeeecCc-cceeeeecCCceEEEehhH---------------------hHHHHHHhCCccceeeechhc
Confidence 467999999999998755 6788889999999999987 456778889999999999887
Q ss_pred CCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe-ec
Q 018235 240 ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF-KA 318 (359)
Q Consensus 240 ~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~-~~ 318 (359)
-.+ .+-.|+.|+++++|++....+ -.|.+|.+.+.|++|-.+. .|++||.+|.|.+|++-.. +++++. .+
T Consensus 297 reR-~vtVGgrDrT~rlwKi~eesq-----lifrg~~~sidcv~~In~~--HfvsGSdnG~IaLWs~~KK-kplf~~~~A 367 (479)
T KOG0299|consen 297 RER-CVTVGGRDRTVRLWKIPEESQ-----LIFRGGEGSIDCVAFINDE--HFVSGSDNGSIALWSLLKK-KPLFTSRLA 367 (479)
T ss_pred ccc-eEEeccccceeEEEeccccce-----eeeeCCCCCeeeEEEeccc--ceeeccCCceEEEeeeccc-CceeEeecc
Confidence 765 566666999999999965333 3588999999999997665 6999999999999999987 777665 34
Q ss_pred C-----------CCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 319 H-----------NADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 319 h-----------~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
| +.+|++|+..|...+++.+.. +++|++|.+..|
T Consensus 368 Hgv~~~~~~~~~~~Witsla~i~~sdL~asGS~----~G~vrLW~i~~g 412 (479)
T KOG0299|consen 368 HGVIPELDPVNGNFWITSLAVIPGSDLLASGSW----SGCVRLWKIEDG 412 (479)
T ss_pred ccccCCccccccccceeeeEecccCceEEecCC----CCceEEEEecCC
Confidence 4 227899999999999988876 899999998876
No 119
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=5.8e-16 Score=135.47 Aligned_cols=178 Identities=22% Similarity=0.374 Sum_probs=135.3
Q ss_pred CeEEEEEecCCCceeeEEEeCC-CCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCC-Cce
Q 018235 155 PILQLRKVAHQGCVNRIRAMTQ-NPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHK-DEG 232 (359)
Q Consensus 155 ~~~~~~~~~H~~~V~~i~~~p~-~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v 232 (359)
......+.+|+..+|.++|... +++.+.+|+.||+|++||++.. ...++..+..|. .+.
T Consensus 60 g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~-------------------~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 60 GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQ-------------------AESARISWTQQSGTPF 120 (376)
T ss_pred hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecc-------------------hhhhheeccCCCCCcc
Confidence 3344566789999999999875 6799999999999999999983 245566677776 366
Q ss_pred EEEEeCCCCCCeEEEEc----CCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCC
Q 018235 233 YAIDWNPITTGRLVTGD----CNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV 308 (359)
Q Consensus 233 ~~l~~sp~~~~~l~sgs----~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~ 308 (359)
.+++-+-.+. ++++|. .+-.+.+||+|...+.+ ..-+..|...|++|+|+|..+++|+|||.||.|.|||+..
T Consensus 121 ~~ld~nck~~-ii~~GtE~~~s~A~v~lwDvR~~qq~l--~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~ 197 (376)
T KOG1188|consen 121 ICLDLNCKKN-IIACGTELTRSDASVVLWDVRSEQQLL--RQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKK 197 (376)
T ss_pred eEeeccCcCC-eEEeccccccCceEEEEEEeccccchh--hhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCC
Confidence 6777776665 777774 36678999999855533 1345679999999999999999999999999999999987
Q ss_pred CC--CceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 309 GK--SALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 309 ~~--~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
.. .++.....|.+.|.++.|...+---++.+.- ...+.+|+...+.
T Consensus 198 d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH---~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 198 DNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTH---METFAIYELEDGS 245 (376)
T ss_pred CcchhhHHHhhcccceeeeeeeecCCcceEEEEEc---cCceeEEEccCCC
Confidence 62 2455555688889999999988222333322 4568889877654
No 120
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=8.3e-16 Score=149.33 Aligned_cols=160 Identities=13% Similarity=0.240 Sum_probs=132.9
Q ss_pred cCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCC
Q 018235 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~ 242 (359)
..+-+++.++|+-.| .++|.|++|-.|++-++.. .....++.+|.++|.+|+++|.+.
T Consensus 94 Rftlp~r~~~v~g~g-~~iaagsdD~~vK~~~~~D---------------------~s~~~~lrgh~apVl~l~~~p~~~ 151 (933)
T KOG1274|consen 94 RFTLPIRDLAVSGSG-KMIAAGSDDTAVKLLNLDD---------------------SSQEKVLRGHDAPVLQLSYDPKGN 151 (933)
T ss_pred eeeccceEEEEecCC-cEEEeecCceeEEEEeccc---------------------cchheeecccCCceeeeeEcCCCC
Confidence 346788999999999 8999999999999999987 566788999999999999999998
Q ss_pred CeEEEEcCCCcEEEEecCCCCcceecCccccC--------CCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceE
Q 018235 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPFIG--------HSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALT 314 (359)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~--------h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~ 314 (359)
+||+.++||.|++|++.. +... ..+.+ ....+..++|+|.+. -||..+.|+.|++|+.... ....
T Consensus 152 -fLAvss~dG~v~iw~~~~-~~~~---~tl~~v~k~n~~~~s~i~~~~aW~Pk~g-~la~~~~d~~Vkvy~r~~w-e~~f 224 (933)
T KOG1274|consen 152 -FLAVSSCDGKVQIWDLQD-GILS---KTLTGVDKDNEFILSRICTRLAWHPKGG-TLAVPPVDNTVKVYSRKGW-ELQF 224 (933)
T ss_pred -EEEEEecCceEEEEEccc-chhh---hhcccCCccccccccceeeeeeecCCCC-eEEeeccCCeEEEEccCCc-eehe
Confidence 999999999999999986 3322 11111 145678899999988 7888889999999998886 5555
Q ss_pred Ee--ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 315 SF--KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 315 ~~--~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
.+ ..+.+.+++++|+|+|++|+.+.- ++.|.||+..+
T Consensus 225 ~Lr~~~~ss~~~~~~wsPnG~YiAAs~~----~g~I~vWnv~t 263 (933)
T KOG1274|consen 225 KLRDKLSSSKFSDLQWSPNGKYIAASTL----DGQILVWNVDT 263 (933)
T ss_pred eecccccccceEEEEEcCCCcEEeeecc----CCcEEEEeccc
Confidence 55 445556999999999999999876 88999999874
No 121
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.71 E-value=6e-16 Score=139.48 Aligned_cols=169 Identities=17% Similarity=0.213 Sum_probs=133.2
Q ss_pred EEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCC
Q 018235 160 RKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (359)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp 239 (359)
.+..|.+.|.++.|+|..+.++.+|+.|++|.+.|++... .......+ .+.|-.+.|.|
T Consensus 281 s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~------------------~s~~~wk~---~g~VEkv~w~~ 339 (463)
T KOG0270|consen 281 SITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPS------------------NSGKEWKF---DGEVEKVAWDP 339 (463)
T ss_pred ehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcc------------------ccCceEEe---ccceEEEEecC
Confidence 3337899999999999999999999999999999999621 01222333 34788999999
Q ss_pred CCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecC
Q 018235 240 ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAH 319 (359)
Q Consensus 240 ~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h 319 (359)
..+..++++..||+++-+|+|+.++++ .++.+|.+.|.+|++++.-+++++|++.|+.|++|++... .+- ....|
T Consensus 340 ~se~~f~~~tddG~v~~~D~R~~~~~v---wt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~-~~~-~v~~~ 414 (463)
T KOG0270|consen 340 HSENSFFVSTDDGTVYYFDIRNPGKPV---WTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVD-SPK-SVKEH 414 (463)
T ss_pred CCceeEEEecCCceEEeeecCCCCCce---eEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCC-CCc-ccccc
Confidence 999899999999999999999987766 7889999999999999999999999999999999998865 221 11122
Q ss_pred ---CCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 320 ---NADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 320 ---~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
-+...|.+++|+-.+++.-.. ....+++||..++.
T Consensus 415 ~~~~~rl~c~~~~~~~a~~la~GG---~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 415 SFKLGRLHCFALDPDVAFTLAFGG---EKAVLRVWDIFTNS 452 (463)
T ss_pred cccccceeecccCCCcceEEEecC---ccceEEEeecccCh
Confidence 233677788887765544322 25689999987654
No 122
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.71 E-value=6.4e-17 Score=147.64 Aligned_cols=157 Identities=19% Similarity=0.283 Sum_probs=133.6
Q ss_pred CceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeE
Q 018235 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRL 245 (359)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l 245 (359)
-...+++.+|+. ++++++..||.|.|||+.. ...+..|+||++.+.||+.+++|. .|
T Consensus 510 paCyALa~spDa-kvcFsccsdGnI~vwDLhn---------------------q~~VrqfqGhtDGascIdis~dGt-kl 566 (705)
T KOG0639|consen 510 PACYALAISPDA-KVCFSCCSDGNIAVWDLHN---------------------QTLVRQFQGHTDGASCIDISKDGT-KL 566 (705)
T ss_pred hhhhhhhcCCcc-ceeeeeccCCcEEEEEccc---------------------ceeeecccCCCCCceeEEecCCCc-ee
Confidence 456678889998 8899999999999999998 567889999999999999999998 99
Q ss_pred EEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEE
Q 018235 246 VTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNV 325 (359)
Q Consensus 246 ~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~ 325 (359)
.||+-|.+|+.||++++.+.. -...++.|.++.++|++. .+|.|-.++.+-|..+... ....+..|.+.|.+
T Consensus 567 WTGGlDntvRcWDlregrqlq-----qhdF~SQIfSLg~cP~~d-WlavGMens~vevlh~skp--~kyqlhlheScVLS 638 (705)
T KOG0639|consen 567 WTGGLDNTVRCWDLREGRQLQ-----QHDFSSQIFSLGYCPTGD-WLAVGMENSNVEVLHTSKP--EKYQLHLHESCVLS 638 (705)
T ss_pred ecCCCccceeehhhhhhhhhh-----hhhhhhhheecccCCCcc-ceeeecccCcEEEEecCCc--cceeecccccEEEE
Confidence 999999999999999854322 112357899999999999 9999999999999887764 34556779999999
Q ss_pred EEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 326 ISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 326 i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
+.|.+.|++++.... |+.+..|..-.|.
T Consensus 639 lKFa~cGkwfvStGk----DnlLnawrtPyGa 666 (705)
T KOG0639|consen 639 LKFAYCGKWFVSTGK----DNLLNAWRTPYGA 666 (705)
T ss_pred EEecccCceeeecCc----hhhhhhccCcccc
Confidence 999999999987765 8889999876654
No 123
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.7e-15 Score=125.76 Aligned_cols=186 Identities=18% Similarity=0.253 Sum_probs=131.6
Q ss_pred CCeEE-EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCc---EEecCCC
Q 018235 154 TPILQ-LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPL---VKFGGHK 229 (359)
Q Consensus 154 ~~~~~-~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~h~ 229 (359)
++.++ +....-...|.++.|+|.| .+.|.|+...+.+|--.............. ...|. ..-+.|.
T Consensus 20 k~~f~~i~~l~dsqairav~fhp~g-~lyavgsnskt~ric~yp~l~~~r~~hea~---------~~pp~v~~kr~khhk 89 (350)
T KOG0641|consen 20 KKHFEAINILEDSQAIRAVAFHPAG-GLYAVGSNSKTFRICAYPALIDLRHAHEAA---------KQPPSVLCKRNKHHK 89 (350)
T ss_pred ccceEEEEEecchhheeeEEecCCC-ceEEeccCCceEEEEccccccCcccccccc---------cCCCeEEeeeccccC
Confidence 34433 5666678899999999999 899999999999987665422111111110 01122 2335688
Q ss_pred CceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCc---------------------------------------------
Q 018235 230 DEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDAT--------------------------------------------- 264 (359)
Q Consensus 230 ~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~--------------------------------------------- 264 (359)
+.||+.+|||.|+ +|++|++|.+|++.-++....
T Consensus 90 gsiyc~~ws~~ge-liatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~t 168 (350)
T KOG0641|consen 90 GSIYCTAWSPCGE-LIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYIT 168 (350)
T ss_pred ccEEEEEecCccC-eEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEe
Confidence 8999999999999 999999999999876653200
Q ss_pred ---ceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe--ecC-----CCCEEEEEEcCCCCe
Q 018235 265 ---WNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF--KAH-----NADVNVISWNRCWLA 334 (359)
Q Consensus 265 ---~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~--~~h-----~~~V~~i~~s~~~~~ 334 (359)
.-...+.+.+|++.|.++- +-++. +|++|+.|.+||+||+|-. .++..+ ..| .+.|..++..|.|++
T Consensus 169 dc~~g~~~~a~sghtghilaly-swn~~-m~~sgsqdktirfwdlrv~-~~v~~l~~~~~~~glessavaav~vdpsgrl 245 (350)
T KOG0641|consen 169 DCGRGQGFHALSGHTGHILALY-SWNGA-MFASGSQDKTIRFWDLRVN-SCVNTLDNDFHDGGLESSAVAAVAVDPSGRL 245 (350)
T ss_pred ecCCCCcceeecCCcccEEEEE-EecCc-EEEccCCCceEEEEeeecc-ceeeeccCcccCCCcccceeEEEEECCCcce
Confidence 0001234556777776652 33455 9999999999999999987 667666 223 357999999999999
Q ss_pred EEEEeeecccceEEEEEeCcCCc
Q 018235 335 VCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 335 l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
|+.+.. |....++|++.|.
T Consensus 246 l~sg~~----dssc~lydirg~r 264 (350)
T KOG0641|consen 246 LASGHA----DSSCMLYDIRGGR 264 (350)
T ss_pred eeeccC----CCceEEEEeeCCc
Confidence 988766 7778888887664
No 124
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.71 E-value=4e-16 Score=139.43 Aligned_cols=185 Identities=14% Similarity=0.178 Sum_probs=131.2
Q ss_pred CeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCcc--ccccccc---c-------ccCC-CCCC-----
Q 018235 155 PILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLN--ALAESET---I-------VGQG-APQV----- 216 (359)
Q Consensus 155 ~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~--~~~~~~~---~-------~~~~-~~~~----- 216 (359)
..+..++.+|++.|+++.|.... ..+++|+.|.+|++||+..... .+..... . .++- +.++
T Consensus 251 ~r~~~TLsGHtdkVt~ak~~~~~-~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~ 329 (459)
T KOG0288|consen 251 LRLRHTLSGHTDKVTAAKFKLSH-SRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDI 329 (459)
T ss_pred hhhhhhhcccccceeeehhhccc-cceeeccccchhhhhhhhhhheeccccccccccceEecceeeeecccccceEEEec
Confidence 34557778899999999998766 4488999999999999876211 1100000 0 0000 0000
Q ss_pred CCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccC----CCCCeEEEEecCCCCCEE
Q 018235 217 SNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIG----HSASVEDLQWSPTEPDVF 292 (359)
Q Consensus 217 ~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~----h~~~V~~v~~sp~~~~~l 292 (359)
+...++.+...+. .|++|+.++++. .|++++.|.++.+.|+++... . .+|.+ -.+.++.++|||++. ++
T Consensus 330 Rs~~~~~sv~~gg-~vtSl~ls~~g~-~lLsssRDdtl~viDlRt~eI-~---~~~sA~g~k~asDwtrvvfSpd~~-Yv 402 (459)
T KOG0288|consen 330 RSADKTRSVPLGG-RVTSLDLSMDGL-ELLSSSRDDTLKVIDLRTKEI-R---QTFSAEGFKCASDWTRVVFSPDGS-YV 402 (459)
T ss_pred cCCceeeEeecCc-ceeeEeeccCCe-EEeeecCCCceeeeecccccE-E---EEeeccccccccccceeEECCCCc-ee
Confidence 2234444444444 799999999998 888889999999999998432 2 22322 224588999999999 99
Q ss_pred EEEeCCCcEEEEECCCCCCceEEeecC--CCCEEEEEEcCCCCeEEEEeeecccceEEEEEe
Q 018235 293 ASCSVDGHIAIWDTRVGKSALTSFKAH--NADVNVISWNRCWLAVCWHLEVMMEHFLFMILD 352 (359)
Q Consensus 293 as~s~Dg~I~iwD~r~~~~~~~~~~~h--~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd 352 (359)
|+||.||+|+||++.++ ++...+... .+.|++++|+|.|..++.... +..+.+|.
T Consensus 403 aAGS~dgsv~iW~v~tg-KlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk----~~~v~lW~ 459 (459)
T KOG0288|consen 403 AAGSADGSVYIWSVFTG-KLEKVLSLSTSNAAITSLSWNPSGSGLLSADK----QKAVTLWT 459 (459)
T ss_pred eeccCCCcEEEEEccCc-eEEEEeccCCCCcceEEEEEcCCCchhhcccC----CcceEecC
Confidence 99999999999999998 665555333 236999999999999988766 77788883
No 125
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.71 E-value=2.7e-16 Score=140.52 Aligned_cols=165 Identities=16% Similarity=0.201 Sum_probs=135.2
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
..+..|+.+|+-+.|+++| .++||++.|.+..||.+.... ..+..+++.+|..+|..+.||
T Consensus 218 qil~~htdEVWfl~FS~nG-kyLAsaSkD~Taiiw~v~~d~------------------~~kl~~tlvgh~~~V~yi~wS 278 (519)
T KOG0293|consen 218 QILQDHTDEVWFLQFSHNG-KYLASASKDSTAIIWIVVYDV------------------HFKLKKTLVGHSQPVSYIMWS 278 (519)
T ss_pred hhHhhCCCcEEEEEEcCCC-eeEeeccCCceEEEEEEecCc------------------ceeeeeeeecccCceEEEEEC
Confidence 4456799999999999999 899999999999999987621 135578999999999999999
Q ss_pred CCCCCeEEEEcCCCcEEEEecCCCCcceecCccc-cCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEee
Q 018235 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPF-IGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK 317 (359)
Q Consensus 239 p~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~-~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~ 317 (359)
|+.+ +|++|+.+..+.+||..++.. . ..+ .+|..++.+++|.|++. .|++|+.|++|..||+... .+....
T Consensus 279 PDdr-yLlaCg~~e~~~lwDv~tgd~-~---~~y~~~~~~S~~sc~W~pDg~-~~V~Gs~dr~i~~wdlDgn--~~~~W~ 350 (519)
T KOG0293|consen 279 PDDR-YLLACGFDEVLSLWDVDTGDL-R---HLYPSGLGFSVSSCAWCPDGF-RFVTGSPDRTIIMWDLDGN--ILGNWE 350 (519)
T ss_pred CCCC-eEEecCchHheeeccCCcchh-h---hhcccCcCCCcceeEEccCCc-eeEecCCCCcEEEecCCcc--hhhccc
Confidence 9999 999999999999999988433 2 222 23568999999999999 8999999999999999864 333332
Q ss_pred c-CCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 318 A-HNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 318 ~-h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
+ ....|.+++..++|++++.... |..+++++..
T Consensus 351 gvr~~~v~dlait~Dgk~vl~v~~----d~~i~l~~~e 384 (519)
T KOG0293|consen 351 GVRDPKVHDLAITYDGKYVLLVTV----DKKIRLYNRE 384 (519)
T ss_pred ccccceeEEEEEcCCCcEEEEEec----ccceeeechh
Confidence 2 2356999999999999988775 7778887643
No 126
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.70 E-value=2.6e-16 Score=136.98 Aligned_cols=173 Identities=17% Similarity=0.253 Sum_probs=129.0
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEe---cCCCC
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF---GGHKD 230 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~h~~ 230 (359)
...+...+++|.+.||.|+++|..++++.++|.|..|++|+++. ..++.+| .||.+
T Consensus 124 ~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~---------------------~~Cv~VfGG~egHrd 182 (385)
T KOG1034|consen 124 SGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT---------------------DVCVAVFGGVEGHRD 182 (385)
T ss_pred hhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC---------------------CeEEEEecccccccC
Confidence 44566778899999999999999999999999999999999998 5666665 56999
Q ss_pred ceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCC----------------c-------ceecCc-cccCCCCCe-------
Q 018235 231 EGYAIDWNPITTGRLVTGDCNSCIYLWEPASDA----------------T-------WNVDPN-PFIGHSASV------- 279 (359)
Q Consensus 231 ~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~----------------~-------~~~~~~-~~~~h~~~V------- 279 (359)
+|.+++|++++. +|+||+.|.+|++|++.... . ...+.. +-.-|...|
T Consensus 183 eVLSvD~~~~gd-~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g 261 (385)
T KOG1034|consen 183 EVLSVDFSLDGD-RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG 261 (385)
T ss_pred cEEEEEEcCCCC-eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHh
Confidence 999999999999 99999999999999997310 0 000000 000121111
Q ss_pred -----------------------------------------------EEE--EecCCCCCEEEEEeCCCcEEEEECCCCC
Q 018235 280 -----------------------------------------------EDL--QWSPTEPDVFASCSVDGHIAIWDTRVGK 310 (359)
Q Consensus 280 -----------------------------------------------~~v--~~sp~~~~~las~s~Dg~I~iwD~r~~~ 310 (359)
.-| +|.|-.. .||.|...|.|.+||++...
T Consensus 262 d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~-~la~gnq~g~v~vwdL~~~e 340 (385)
T KOG1034|consen 262 DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQK-MLALGNQSGKVYVWDLDNNE 340 (385)
T ss_pred hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHH-HHhhccCCCcEEEEECCCCC
Confidence 111 2345455 78889999999999999873
Q ss_pred CceE-Ee--ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeC
Q 018235 311 SALT-SF--KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDC 353 (359)
Q Consensus 311 ~~~~-~~--~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~ 353 (359)
.+.. ++ ......|...+|+.++.+|+..+. ++.|--||-
T Consensus 341 p~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcd----d~~Vwrwdr 382 (385)
T KOG1034|consen 341 PPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCD----DGTVWRWDR 382 (385)
T ss_pred CccCceEEeccccceeeeeeecccCcEEEEEeC----CCcEEEEEe
Confidence 2222 22 334567999999999999999887 777777774
No 127
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.70 E-value=1.2e-16 Score=149.34 Aligned_cols=173 Identities=17% Similarity=0.246 Sum_probs=135.8
Q ss_pred CCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCC
Q 018235 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (359)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~ 243 (359)
....|+.+.|.|..+..+|.+++||.|+||.+......- ....|...+.+|...|++|.|+|....
T Consensus 626 Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e--------------~~~tPe~~lt~h~eKI~slRfHPLAad 691 (1012)
T KOG1445|consen 626 NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPE--------------NEMTPEKILTIHGEKITSLRFHPLAAD 691 (1012)
T ss_pred cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCc--------------ccCCcceeeecccceEEEEEecchhhh
Confidence 456789999999998999999999999999998732110 025677889999999999999999888
Q ss_pred eEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecC-CCC
Q 018235 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAH-NAD 322 (359)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h-~~~ 322 (359)
.|++++.|.+|+|||+++ .... ..+.+|+..|.+++|||+|. .+|+.+.||+|++|..|....++..-.+- ...
T Consensus 692 vLa~asyd~Ti~lWDl~~-~~~~---~~l~gHtdqIf~~AWSpdGr-~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtR 766 (1012)
T KOG1445|consen 692 VLAVASYDSTIELWDLAN-AKLY---SRLVGHTDQIFGIAWSPDGR-RIATVCKDGTLRVYEPRSREQPVYEGKGPVGTR 766 (1012)
T ss_pred Hhhhhhccceeeeeehhh-hhhh---heeccCcCceeEEEECCCCc-ceeeeecCceEEEeCCCCCCCccccCCCCccCc
Confidence 999999999999999988 3333 57899999999999999999 99999999999999999885566543221 223
Q ss_pred EEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 323 VNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 323 V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
--.|.|.-+|.+++...-.......|.+|+..+
T Consensus 767 gARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 767 GARILWACDGRIVIVVGFDKSSERQVQMYDAQT 799 (1012)
T ss_pred ceeEEEEecCcEEEEecccccchhhhhhhhhhh
Confidence 356788888888776543223345566665543
No 128
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=5.8e-16 Score=134.19 Aligned_cols=160 Identities=13% Similarity=0.124 Sum_probs=127.8
Q ss_pred cCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCC
Q 018235 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~ 242 (359)
.|.. .+|++|++-| .++|.|+.+|.|.|||+.+ ..+-..+.+|..+|.+|+||++|+
T Consensus 22 d~~~-a~~~~Fs~~G-~~lAvGc~nG~vvI~D~~T---------------------~~iar~lsaH~~pi~sl~WS~dgr 78 (405)
T KOG1273|consen 22 DNPL-AECCQFSRWG-DYLAVGCANGRVVIYDFDT---------------------FRIARMLSAHVRPITSLCWSRDGR 78 (405)
T ss_pred cCCc-cceEEeccCc-ceeeeeccCCcEEEEEccc---------------------cchhhhhhccccceeEEEecCCCC
Confidence 3444 8899999999 8999999999999999998 456778999999999999999999
Q ss_pred CeEEEEcCCCcEEEEecCCCCcceecCcccc-------CCC-------------------------------------CC
Q 018235 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPFI-------GHS-------------------------------------AS 278 (359)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~-------~h~-------------------------------------~~ 278 (359)
.|+|+|.|..|.+||+..+. ++... .|. -|. ..
T Consensus 79 -~LltsS~D~si~lwDl~~gs-~l~ri-rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~s 155 (405)
T KOG1273|consen 79 -KLLTSSRDWSIKLWDLLKGS-PLKRI-RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSS 155 (405)
T ss_pred -EeeeecCCceeEEEeccCCC-ceeEE-EccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccc
Confidence 99999999999999998743 22100 000 000 00
Q ss_pred eEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCC-CCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 279 VEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHN-ADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 279 V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~-~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
-.+..|.+.|. ++.+|...|.+.++|..+. +++..++-.. ..|.+|.++..|.+++..+. |..||.++.+
T Consensus 156 as~~~fdr~g~-yIitGtsKGkllv~~a~t~-e~vas~rits~~~IK~I~~s~~g~~liiNts----DRvIR~ye~~ 226 (405)
T KOG1273|consen 156 ASHGVFDRRGK-YIITGTSKGKLLVYDAETL-ECVASFRITSVQAIKQIIVSRKGRFLIINTS----DRVIRTYEIS 226 (405)
T ss_pred cccccccCCCC-EEEEecCcceEEEEecchh-eeeeeeeechheeeeEEEEeccCcEEEEecC----CceEEEEehh
Confidence 11123667777 8999999999999999987 7777765444 77999999999999999987 9999999876
No 129
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.70 E-value=7.3e-16 Score=132.86 Aligned_cols=162 Identities=16% Similarity=0.315 Sum_probs=122.4
Q ss_pred cCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCC
Q 018235 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~ 242 (359)
+-...|..|+|+|+...+++.+|-||+|++|++.... ...+ .....|.+++.+++|+.++.
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g------------------~~~~-ka~~~~~~PvL~v~Wsddgs 85 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSG------------------QLVP-KAQQSHDGPVLDVCWSDDGS 85 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCC------------------cccc-hhhhccCCCeEEEEEccCCc
Confidence 3457899999999766888899999999999998721 0122 34567889999999999997
Q ss_pred CeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCC-CEEEEEeCCCcEEEEECCCCCCceEEeecCCC
Q 018235 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEP-DVFASCSVDGHIAIWDTRVGKSALTSFKAHNA 321 (359)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~-~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~ 321 (359)
.+++|++|+.+++||+.+ ++. ..+..|..+|..+.|-+... .+|+|||-|++|++||+|.. .++.++. ...
T Consensus 86 -kVf~g~~Dk~~k~wDL~S-~Q~----~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~-~pv~t~~-LPe 157 (347)
T KOG0647|consen 86 -KVFSGGCDKQAKLWDLAS-GQV----SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS-NPVATLQ-LPE 157 (347)
T ss_pred -eEEeeccCCceEEEEccC-CCe----eeeeecccceeEEEEecCCCcceeEecccccceeecccCCC-Ceeeeee-ccc
Confidence 999999999999999987 443 45778999999999976533 38999999999999999987 7777664 233
Q ss_pred CEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 322 DVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 322 ~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
.+.++.. -..+++.++. ++.|.++..+.+.
T Consensus 158 RvYa~Dv--~~pm~vVata----~r~i~vynL~n~~ 187 (347)
T KOG0647|consen 158 RVYAADV--LYPMAVVATA----ERHIAVYNLENPP 187 (347)
T ss_pred eeeehhc--cCceeEEEec----CCcEEEEEcCCCc
Confidence 4544432 2344455554 5556666665543
No 130
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.69 E-value=4.7e-16 Score=148.08 Aligned_cols=154 Identities=19% Similarity=0.312 Sum_probs=134.4
Q ss_pred CCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCe
Q 018235 165 QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGR 244 (359)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~ 244 (359)
...|++++.+|+. .++|.|..||.|+||++.. ..+..+|.||...|+.|.|...|. +
T Consensus 65 k~evt~l~~~~d~-l~lAVGYaDGsVqif~~~s---------------------~~~~~tfngHK~AVt~l~fd~~G~-r 121 (888)
T KOG0306|consen 65 KAEVTCLRSSDDI-LLLAVGYADGSVQIFSLES---------------------EEILITFNGHKAAVTTLKFDKIGT-R 121 (888)
T ss_pred cceEEEeeccCCc-ceEEEEecCceEEeeccCC---------------------CceeeeecccccceEEEEEcccCc-e
Confidence 3689999999988 7899999999999999987 467789999999999999999998 9
Q ss_pred EEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEE
Q 018235 245 LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVN 324 (359)
Q Consensus 245 l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~ 324 (359)
|+||+.|+.|-+||+-.. .-. ..+.||+..|+..-|..... +++++|.|+.|++||+.+. .+..+.-.|.+.|+
T Consensus 122 laSGskDt~IIvwDlV~E-~Gl---~rL~GHkd~iT~~~F~~~~~-~lvS~sKDs~iK~WdL~tq-hCf~Thvd~r~Eiw 195 (888)
T KOG0306|consen 122 LASGSKDTDIIVWDLVGE-EGL---FRLRGHKDSITQALFLNGDS-FLVSVSKDSMIKFWDLETQ-HCFETHVDHRGEIW 195 (888)
T ss_pred EeecCCCccEEEEEeccc-eee---EEeecchHHHhHHhccCCCe-EEEEeccCceEEEEecccc-eeeeEEecccceEE
Confidence 999999999999999763 222 56899999999998887555 9999999999999999997 78888889999999
Q ss_pred EEEEcCCCCeEEEEeeecccceEEEEEeC
Q 018235 325 VISWNRCWLAVCWHLEVMMEHFLFMILDC 353 (359)
Q Consensus 325 ~i~~s~~~~~l~~~~~~~~~d~~i~iwd~ 353 (359)
.+++.+ ..++.+.. +..+++|+.
T Consensus 196 ~l~~~~--~~lvt~~~----dse~~v~~L 218 (888)
T KOG0306|consen 196 ALVLDE--KLLVTAGT----DSELKVWEL 218 (888)
T ss_pred EEEEec--ceEEEEec----CCceEEEEe
Confidence 999998 55555544 677889987
No 131
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=3.9e-15 Score=128.75 Aligned_cols=209 Identities=17% Similarity=0.221 Sum_probs=148.5
Q ss_pred CCceeeeChhHhhhhhcccccCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCC
Q 018235 46 EGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNK 125 (359)
Q Consensus 46 ~~~~l~~~~~~Y~~~~~~~~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~ 125 (359)
+|+-..||=..-++.-.+..+-|-|.+.+.++. .++.|+ -+++|..+++. .
T Consensus 34 DgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~------------~~~~G~-----~dg~vr~~Dln-~----------- 84 (323)
T KOG1036|consen 34 DGSLRLYDVPANSLKLKFKHGAPLLDCAFADES------------TIVTGG-----LDGQVRRYDLN-T----------- 84 (323)
T ss_pred cCcEEEEeccchhhhhheecCCceeeeeccCCc------------eEEEec-----cCceEEEEEec-C-----------
Confidence 677788888888999999999999999999863 566676 57899999883 1
Q ss_pred CCCCCCCCCCCCCCCCCCCCcccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 018235 126 PSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAES 205 (359)
Q Consensus 126 ~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~ 205 (359)
.+ ..++-.|..+|.||.+++.. ..+++|+-|++|++||.+..
T Consensus 85 ----------------------------~~--~~~igth~~~i~ci~~~~~~-~~vIsgsWD~~ik~wD~R~~------- 126 (323)
T KOG1036|consen 85 ----------------------------GN--EDQIGTHDEGIRCIEYSYEV-GCVISGSWDKTIKFWDPRNK------- 126 (323)
T ss_pred ----------------------------Cc--ceeeccCCCceEEEEeeccC-CeEEEcccCccEEEEecccc-------
Confidence 11 12344799999999999876 78999999999999999851
Q ss_pred cccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCc---------------------
Q 018235 206 ETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDAT--------------------- 264 (359)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~--------------------- 264 (359)
.++.++.. ...|++++.+- . .|+.|..+..+.+||+|+...
T Consensus 127 --------------~~~~~~d~-~kkVy~~~v~g--~-~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn 188 (323)
T KOG1036|consen 127 --------------VVVGTFDQ-GKKVYCMDVSG--N-RLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPN 188 (323)
T ss_pred --------------cccccccc-CceEEEEeccC--C-EEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecC
Confidence 11112211 11444444432 1 444444445555555443210
Q ss_pred -----------------------ceecCccccCCC---------CCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCc
Q 018235 265 -----------------------WNVDPNPFIGHS---------ASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSA 312 (359)
Q Consensus 265 -----------------------~~~~~~~~~~h~---------~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~ 312 (359)
.......|..|. .+|++|+|||-.. .||||+.||.|.+||+.+. +.
T Consensus 189 ~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~-tfaTgGsDG~V~~Wd~~~r-Kr 266 (323)
T KOG1036|consen 189 GEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG-TFATGGSDGIVNIWDLFNR-KR 266 (323)
T ss_pred CCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccc-eEEecCCCceEEEccCcch-hh
Confidence 000012344453 3789999999988 9999999999999999987 67
Q ss_pred eEEeecCCCCEEEEEEcCCCCeEEEEeee
Q 018235 313 LTSFKAHNADVNVISWNRCWLAVCWHLEV 341 (359)
Q Consensus 313 ~~~~~~h~~~V~~i~~s~~~~~l~~~~~~ 341 (359)
+..+......|.+++|+.+|..|+.+...
T Consensus 267 l~q~~~~~~SI~slsfs~dG~~LAia~sy 295 (323)
T KOG1036|consen 267 LKQLAKYETSISSLSFSMDGSLLAIASSY 295 (323)
T ss_pred hhhccCCCCceEEEEeccCCCeEEEEech
Confidence 77776667779999999999999987654
No 132
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.69 E-value=1e-16 Score=143.17 Aligned_cols=166 Identities=19% Similarity=0.259 Sum_probs=138.0
Q ss_pred EEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEE
Q 018235 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAID 236 (359)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 236 (359)
++..+.+-.|.|+++.|.+++ ..+++.+.|+.+++|++.. .+...+|.||++.|+++.
T Consensus 211 ~~~tLaGs~g~it~~d~d~~~-~~~iAas~d~~~r~Wnvd~---------------------~r~~~TLsGHtdkVt~ak 268 (459)
T KOG0288|consen 211 LISTLAGSLGNITSIDFDSDN-KHVIAASNDKNLRLWNVDS---------------------LRLRHTLSGHTDKVTAAK 268 (459)
T ss_pred hhhhhhccCCCcceeeecCCC-ceEEeecCCCceeeeeccc---------------------hhhhhhhcccccceeeeh
Confidence 345666778999999999999 5666678999999999997 677889999999999999
Q ss_pred eCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe
Q 018235 237 WNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF 316 (359)
Q Consensus 237 ~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~ 316 (359)
|..... .+++|+.|.+|++||+.. ..+. ...+ ..+.+++|..+ ...++||-.|+.||+||+|+. .+...+
T Consensus 269 ~~~~~~-~vVsgs~DRtiK~WDl~k-~~C~--kt~l--~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~-~~~~sv 338 (459)
T KOG0288|consen 269 FKLSHS-RVVSGSADRTIKLWDLQK-AYCS--KTVL--PGSQCNDIVCS---ISDVISGHFDKKVRFWDIRSA-DKTRSV 338 (459)
T ss_pred hhcccc-ceeeccccchhhhhhhhh-hhee--cccc--ccccccceEec---ceeeeecccccceEEEeccCC-ceeeEe
Confidence 988776 799999999999999987 3332 1223 34677888876 238999999999999999998 778888
Q ss_pred ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCccC
Q 018235 317 KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEIR 359 (359)
Q Consensus 317 ~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v~ 359 (359)
..+. .|+++..++++.-++...+ |..+.+.|.++..|+
T Consensus 339 ~~gg-~vtSl~ls~~g~~lLsssR----Ddtl~viDlRt~eI~ 376 (459)
T KOG0288|consen 339 PLGG-RVTSLDLSMDGLELLSSSR----DDTLKVIDLRTKEIR 376 (459)
T ss_pred ecCc-ceeeEeeccCCeEEeeecC----CCceeeeecccccEE
Confidence 7766 7999999999998887766 889999999987664
No 133
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.68 E-value=7.8e-17 Score=135.48 Aligned_cols=167 Identities=19% Similarity=0.235 Sum_probs=142.4
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceE
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (359)
..-.+-++.+|+|.|+......+. ...|+++.|-+-+|||.-+ +..+.+| .|..-|.
T Consensus 48 tgdwigtfeghkgavw~~~l~~na-~~aasaaadftakvw~a~t---------------------gdelhsf-~hkhivk 104 (334)
T KOG0278|consen 48 TGDWIGTFEGHKGAVWSATLNKNA-TRAASAAADFTAKVWDAVT---------------------GDELHSF-EHKHIVK 104 (334)
T ss_pred CCCcEEeeeccCcceeeeecCchh-hhhhhhcccchhhhhhhhh---------------------hhhhhhh-hhhheee
Confidence 445667888999999999998876 7889999999999999876 5666777 4788899
Q ss_pred EEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCce
Q 018235 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL 313 (359)
Q Consensus 234 ~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~ 313 (359)
+++|+.+.. +|++|+.+..++|||++....+. ..+.+|++.|..+-|+.... .|+|.+.|++||+||.|++ ..+
T Consensus 105 ~~af~~ds~-~lltgg~ekllrvfdln~p~App---~E~~ghtg~Ir~v~wc~eD~-~iLSSadd~tVRLWD~rTg-t~v 178 (334)
T KOG0278|consen 105 AVAFSQDSN-YLLTGGQEKLLRVFDLNRPKAPP---KEISGHTGGIRTVLWCHEDK-CILSSADDKTVRLWDHRTG-TEV 178 (334)
T ss_pred eEEecccch-hhhccchHHHhhhhhccCCCCCc---hhhcCCCCcceeEEEeccCc-eEEeeccCCceEEEEeccC-cEE
Confidence 999999998 99999999999999998754443 77899999999999999888 7777799999999999998 666
Q ss_pred EEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 314 TSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 314 ~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
+++. .+.+|+++..+++|.+|.... ...|.+||+.+
T Consensus 179 ~sL~-~~s~VtSlEvs~dG~ilTia~-----gssV~Fwdaks 214 (334)
T KOG0278|consen 179 QSLE-FNSPVTSLEVSQDGRILTIAY-----GSSVKFWDAKS 214 (334)
T ss_pred EEEe-cCCCCcceeeccCCCEEEEec-----CceeEEecccc
Confidence 7765 566799999999999987764 35689998765
No 134
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=3.5e-16 Score=155.22 Aligned_cols=239 Identities=19% Similarity=0.317 Sum_probs=179.2
Q ss_pred eeeCCccc--------CCCCceeeeChhHh-------hhhhcccccCcceeEEEEeccCCCCcccCCceEEEEEeecCCC
Q 018235 36 VWQPGVDK--------LEEGEELQCDPTAY-------NSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEK 100 (359)
Q Consensus 36 ~~~~~~~~--------~~~~~~l~~~~~~Y-------~~~~~~~~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~ 100 (359)
+|-+..+. +++|..--||+... -+.+.-...-|.+.+|+-|.. ...|..|
T Consensus 71 ~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q----------~nlLASG----- 135 (1049)
T KOG0307|consen 71 AWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQ----------GNLLASG----- 135 (1049)
T ss_pred eecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccC----------Cceeecc-----
Confidence 47765443 55666666776553 223344556778888887763 1234333
Q ss_pred CCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcE
Q 018235 101 PSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHI 180 (359)
Q Consensus 101 ~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~ 180 (359)
+.+..|.||++.++.. |.- .-...-.+.|.+++|+.+-.++
T Consensus 136 a~~geI~iWDlnn~~t--------------------------------------P~~-~~~~~~~~eI~~lsWNrkvqhI 176 (1049)
T KOG0307|consen 136 ADDGEILIWDLNKPET--------------------------------------PFT-PGSQAPPSEIKCLSWNRKVSHI 176 (1049)
T ss_pred CCCCcEEEeccCCcCC--------------------------------------CCC-CCCCCCcccceEeccchhhhHH
Confidence 4678999999965321 111 0033567899999999988899
Q ss_pred EEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCC--ceEEEEeCCCCCCeEEEEcCCC---cEE
Q 018235 181 CASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKD--EGYAIDWNPITTGRLVTGDCNS---CIY 255 (359)
Q Consensus 181 lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~sp~~~~~l~sgs~dg---~I~ 255 (359)
||+++.+|.+.|||++. .+++..+..|.. .+..|.|+|++...|++++.|. .|.
T Consensus 177 LAS~s~sg~~~iWDlr~---------------------~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~Pviq 235 (1049)
T KOG0307|consen 177 LASGSPSGRAVIWDLRK---------------------KKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQ 235 (1049)
T ss_pred hhccCCCCCceeccccC---------------------CCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeE
Confidence 99999999999999998 466666666554 5779999999988888887664 689
Q ss_pred EEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeE
Q 018235 256 LWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAV 335 (359)
Q Consensus 256 lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l 335 (359)
+||+|....++ +.+.+|...|.++.|++.+.++++||+.|+.|.+|+..++ +.+..+.....++..+.|+|....+
T Consensus 236 lWDlR~assP~---k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg-Evl~~~p~~~nW~fdv~w~pr~P~~ 311 (1049)
T KOG0307|consen 236 LWDLRFASSPL---KILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG-EVLGELPAQGNWCFDVQWCPRNPSV 311 (1049)
T ss_pred eecccccCCch---hhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc-eEeeecCCCCcceeeeeecCCCcch
Confidence 99999866555 7889999999999999999889999999999999999998 7888888888899999999998855
Q ss_pred EEEeeecccceEEEEEeCcCC
Q 018235 336 CWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 336 ~~~~~~~~~d~~i~iwd~~~g 356 (359)
+....- ++.|.|+....+
T Consensus 312 ~A~asf---dgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 312 MAAASF---DGKISIYSLQGT 329 (1049)
T ss_pred hhhhee---ccceeeeeeecC
Confidence 433222 666777765443
No 135
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.68 E-value=3.4e-16 Score=142.94 Aligned_cols=160 Identities=14% Similarity=0.251 Sum_probs=127.5
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceE
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (359)
.|+-......-..-|..+...|++ .-+++|++-.+|.|||+..... .....+......++
T Consensus 454 ~PvsqLdcl~rdnyiRSckL~pdg-rtLivGGeastlsiWDLAapTp-------------------rikaeltssapaCy 513 (705)
T KOG0639|consen 454 SPVSQLDCLNRDNYIRSCKLLPDG-RTLIVGGEASTLSIWDLAAPTP-------------------RIKAELTSSAPACY 513 (705)
T ss_pred CccccccccCcccceeeeEecCCC-ceEEeccccceeeeeeccCCCc-------------------chhhhcCCcchhhh
Confidence 455444444456778899999999 6777889999999999988321 11223334445789
Q ss_pred EEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCce
Q 018235 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL 313 (359)
Q Consensus 234 ~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~ 313 (359)
+|+.||+.. ..++|..||.|.|||+++ ...+ +.|.||+..+.||..+++|. -|.||+-|.+||-||+|.+ ..+
T Consensus 514 ALa~spDak-vcFsccsdGnI~vwDLhn-q~~V---rqfqGhtDGascIdis~dGt-klWTGGlDntvRcWDlreg-rql 586 (705)
T KOG0639|consen 514 ALAISPDAK-VCFSCCSDGNIAVWDLHN-QTLV---RQFQGHTDGASCIDISKDGT-KLWTGGLDNTVRCWDLREG-RQL 586 (705)
T ss_pred hhhcCCccc-eeeeeccCCcEEEEEccc-ceee---ecccCCCCCceeEEecCCCc-eeecCCCccceeehhhhhh-hhh
Confidence 999999998 888888899999999987 4444 88999999999999999999 9999999999999999998 333
Q ss_pred EEeecCCCCEEEEEEcCCCCeEEEEeee
Q 018235 314 TSFKAHNADVNVISWNRCWLAVCWHLEV 341 (359)
Q Consensus 314 ~~~~~h~~~V~~i~~s~~~~~l~~~~~~ 341 (359)
... ...+.|.++..+|++.+++.++.+
T Consensus 587 qqh-dF~SQIfSLg~cP~~dWlavGMen 613 (705)
T KOG0639|consen 587 QQH-DFSSQIFSLGYCPTGDWLAVGMEN 613 (705)
T ss_pred hhh-hhhhhheecccCCCccceeeeccc
Confidence 332 235679999999999999999873
No 136
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.67 E-value=4.1e-15 Score=127.55 Aligned_cols=162 Identities=17% Similarity=0.221 Sum_probs=130.7
Q ss_pred CCCceeeEEEeCCC-CcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCC
Q 018235 164 HQGCVNRIRAMTQN-PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (359)
Q Consensus 164 H~~~V~~i~~~p~~-~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~ 242 (359)
|....++-+|+|.. .+.+++ ..++++..||+++. .+...+-..|...+..|+|+|...
T Consensus 169 ~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~D~RT~--------------------~~~~sI~dAHgq~vrdlDfNpnkq 227 (370)
T KOG1007|consen 169 MRHSFTSGAWSPHHDGNQVAT-TSDSTLQFWDLRTM--------------------KKNNSIEDAHGQRVRDLDFNPNKQ 227 (370)
T ss_pred ccceecccccCCCCccceEEE-eCCCcEEEEEccch--------------------hhhcchhhhhcceeeeccCCCCce
Confidence 66677788999833 367776 55799999999983 233444567888999999999999
Q ss_pred CeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCC------------
Q 018235 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK------------ 310 (359)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~------------ 310 (359)
.+|+||+.||.|+|||.|....++ +.+.+|...|.+|.|+|....++++++.|..|.+|....-.
T Consensus 228 ~~lvt~gDdgyvriWD~R~tk~pv---~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~des 304 (370)
T KOG1007|consen 228 HILVTCGDDGYVRIWDTRKTKFPV---QELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDES 304 (370)
T ss_pred EEEEEcCCCccEEEEeccCCCccc---cccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccc
Confidence 899999999999999999855554 78899999999999999988899999999999999654321
Q ss_pred ----------------CceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEe
Q 018235 311 ----------------SALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILD 352 (359)
Q Consensus 311 ----------------~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd 352 (359)
..+.++..|...|.+++|+.-.+++..++.. |+.+.|=.
T Consensus 305 e~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSY---DGRviIs~ 359 (370)
T KOG1007|consen 305 ESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSY---DGRVIISS 359 (370)
T ss_pred cCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEecc---CceEEeec
Confidence 1234567799999999999999998888775 77666543
No 137
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.67 E-value=2.6e-15 Score=137.02 Aligned_cols=172 Identities=15% Similarity=0.218 Sum_probs=137.2
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCC-CCce
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGH-KDEG 232 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v 232 (359)
...++..+.+|+..|+++.++... .+||+++..|.|.|..+.+. .....|... ...+
T Consensus 110 ~kl~hr~lkdh~stvt~v~YN~~D-eyiAsvs~gGdiiih~~~t~---------------------~~tt~f~~~sgqsv 167 (673)
T KOG4378|consen 110 AKLIHRFLKDHQSTVTYVDYNNTD-EYIASVSDGGDIIIHGTKTK---------------------QKTTTFTIDSGQSV 167 (673)
T ss_pred HHHHhhhccCCcceeEEEEecCCc-ceeEEeccCCcEEEEecccC---------------------ccccceecCCCCeE
Confidence 334446677899999999999877 79999999999999999872 222334332 3356
Q ss_pred EEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCc
Q 018235 233 YAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSA 312 (359)
Q Consensus 233 ~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~ 312 (359)
.-|.+||..+.+|.+++.+|.|.+||+.. ..+. ......|..+...|||+|.+.-+|++.+.|+.|.+||++.. ..
T Consensus 168 Rll~ys~skr~lL~~asd~G~VtlwDv~g-~sp~--~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~-~s 243 (673)
T KOG4378|consen 168 RLLRYSPSKRFLLSIASDKGAVTLWDVQG-MSPI--FHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQ-AS 243 (673)
T ss_pred EEeecccccceeeEeeccCCeEEEEeccC-CCcc--cchhhhccCCcCcceecCCccceEEEecccceEEEeecccc-cc
Confidence 68999999998899999999999999965 3333 24456799999999999998889999999999999999975 43
Q ss_pred eEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 313 LTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 313 ~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
...+ ....+...++|.++|.+|+.+.. .+.|..||++.-
T Consensus 244 ~~~l-~y~~Plstvaf~~~G~~L~aG~s----~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 244 TDRL-TYSHPLSTVAFSECGTYLCAGNS----KGELIAYDMRST 282 (673)
T ss_pred ccee-eecCCcceeeecCCceEEEeecC----CceEEEEecccC
Confidence 3333 35668899999999999999876 666788887753
No 138
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.66 E-value=1.9e-15 Score=136.77 Aligned_cols=160 Identities=13% Similarity=0.233 Sum_probs=136.4
Q ss_pred ecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCC
Q 018235 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPIT 241 (359)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~ 241 (359)
.+|...|.+++.++++ .+||||+.|..|.||+..+ .+++..|.+|.+.|.+|+|-...
T Consensus 199 ~~h~keil~~avS~Dg-kylatgg~d~~v~Iw~~~t---------------------~ehv~~~~ghr~~V~~L~fr~gt 256 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDG-KYLATGGRDRHVQIWDCDT---------------------LEHVKVFKGHRGAVSSLAFRKGT 256 (479)
T ss_pred ccccceeEEEEEcCCC-cEEEecCCCceEEEecCcc---------------------cchhhcccccccceeeeeeecCc
Confidence 4899999999999999 8999999999999999998 68888999999999999998766
Q ss_pred CCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCC
Q 018235 242 TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNA 321 (359)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~ 321 (359)
. .|++++.|++|++|++.. ...+ .++.+|.+.|.+|.-..-+. ++..|+.|+++++|++.. .....+.+|.+
T Consensus 257 ~-~lys~s~Drsvkvw~~~~-~s~v---etlyGHqd~v~~IdaL~reR-~vtVGgrDrT~rlwKi~e--esqlifrg~~~ 328 (479)
T KOG0299|consen 257 S-ELYSASADRSVKVWSIDQ-LSYV---ETLYGHQDGVLGIDALSRER-CVTVGGRDRTVRLWKIPE--ESQLIFRGGEG 328 (479)
T ss_pred c-ceeeeecCCceEEEehhH-hHHH---HHHhCCccceeeechhcccc-eEEeccccceeEEEeccc--cceeeeeCCCC
Confidence 5 899999999999999977 4444 78999999999998877777 777777999999999955 34445678998
Q ss_pred CEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 322 DVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 322 ~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
.+-|++|-.+..++ .+.. ++.|.+|...+.
T Consensus 329 sidcv~~In~~Hfv-sGSd----nG~IaLWs~~KK 358 (479)
T KOG0299|consen 329 SIDCVAFINDEHFV-SGSD----NGSIALWSLLKK 358 (479)
T ss_pred CeeeEEEeccccee-eccC----CceEEEeeeccc
Confidence 99999998766654 3433 788999987654
No 139
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.66 E-value=1.3e-15 Score=136.01 Aligned_cols=169 Identities=20% Similarity=0.298 Sum_probs=125.0
Q ss_pred EEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEe
Q 018235 158 QLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (359)
Q Consensus 158 ~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (359)
...+-.|...||++||+|.| .++|||+++|.|.+|-..... .. .... .............++.+|..+++.|+|
T Consensus 58 ~s~Ls~H~~aVN~vRf~p~g-elLASg~D~g~v~lWk~~~~~-~~-~~d~---e~~~~ke~w~v~k~lr~h~~diydL~W 131 (434)
T KOG1009|consen 58 LSSLSRHTRAVNVVRFSPDG-ELLASGGDGGEVFLWKQGDVR-IF-DADT---EADLNKEKWVVKKVLRGHRDDIYDLAW 131 (434)
T ss_pred eecccCCcceeEEEEEcCCc-CeeeecCCCceEEEEEecCcC-Cc-cccc---hhhhCccceEEEEEecccccchhhhhc
Confidence 35667899999999999999 899999999999999876410 00 0000 000000123445678899999999999
Q ss_pred CCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEee
Q 018235 238 NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK 317 (359)
Q Consensus 238 sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~ 317 (359)
+|++. .+++|+.|.++++||+.. +... ..+..|...|..++|.|-++ .+++-+.|+..+++.+... +.+..+.
T Consensus 132 s~d~~-~l~s~s~dns~~l~Dv~~-G~l~---~~~~dh~~yvqgvawDpl~q-yv~s~s~dr~~~~~~~~~~-~~~~~~~ 204 (434)
T KOG1009|consen 132 SPDSN-FLVSGSVDNSVRLWDVHA-GQLL---AILDDHEHYVQGVAWDPLNQ-YVASKSSDRHPEGFSAKLK-QVIKRHG 204 (434)
T ss_pred cCCCc-eeeeeeccceEEEEEecc-ceeE---eeccccccccceeecchhhh-hhhhhccCcccceeeeeee-eeeeeee
Confidence 99998 999999999999999988 5554 67889999999999999999 9999999987777766543 1111110
Q ss_pred -------------------cC----CCCEEEEEEcCCCCeEEEEe
Q 018235 318 -------------------AH----NADVNVISWNRCWLAVCWHL 339 (359)
Q Consensus 318 -------------------~h----~~~V~~i~~s~~~~~l~~~~ 339 (359)
-| ......++|+|+|.+++...
T Consensus 205 ~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPa 249 (434)
T KOG1009|consen 205 LDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPA 249 (434)
T ss_pred eeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccc
Confidence 01 12346689999999887653
No 140
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.66 E-value=7.7e-15 Score=127.69 Aligned_cols=215 Identities=18% Similarity=0.248 Sum_probs=167.4
Q ss_pred CceeeeChhHhhhhhcccccCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCC
Q 018235 47 GEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKP 126 (359)
Q Consensus 47 ~~~l~~~~~~Y~~~~~~~~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~ 126 (359)
..+|-+.=.+||.+-..+. ..|+++-||+ -+|.+|- ++.|.|++++. +.+.-
T Consensus 142 tG~lraSy~~ydh~de~ta---AhsL~Fs~DG-----------eqlfaGy------krcirvFdt~R---pGr~c----- 193 (406)
T KOG2919|consen 142 TGKLRASYRAYDHQDEYTA---AHSLQFSPDG-----------EQLFAGY------KRCIRVFDTSR---PGRDC----- 193 (406)
T ss_pred ccccccchhhhhhHHhhhh---heeEEecCCC-----------CeEeecc------cceEEEeeccC---CCCCC-----
Confidence 3466777788988776643 4689999996 4777776 78999998753 22210
Q ss_pred CCCCCCCCCCCCCCCCCCCcccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCcccccccc
Q 018235 127 SNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESE 206 (359)
Q Consensus 127 ~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~ 206 (359)
+ --+.+..-..+..|.|.+++|+|..+..+|.++...++-||.-..
T Consensus 194 ------------~-------------vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~--------- 239 (406)
T KOG2919|consen 194 ------------P-------------VYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG--------- 239 (406)
T ss_pred ------------c-------------chhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCC---------
Confidence 0 033333445677899999999999988999999999999998776
Q ss_pred ccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcC-CCcEEEEecCCCCcceecCccccCCCC-CeEEEEe
Q 018235 207 TIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDC-NSCIYLWEPASDATWNVDPNPFIGHSA-SVEDLQW 284 (359)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~-dg~I~lwd~~~~~~~~~~~~~~~~h~~-~V~~v~~ 284 (359)
..|++.+-+|.+.|+.|.|+++|+ .|.+|+. +-.|..||+|....++ ..+..|.. .-..|.|
T Consensus 240 ------------~~pl~llggh~gGvThL~~~edGn-~lfsGaRk~dkIl~WDiR~~~~pv---~~L~rhv~~TNQRI~F 303 (406)
T KOG2919|consen 240 ------------RRPLQLLGGHGGGVTHLQWCEDGN-KLFSGARKDDKILCWDIRYSRDPV---YALERHVGDTNQRILF 303 (406)
T ss_pred ------------CCceeeecccCCCeeeEEeccCcC-eecccccCCCeEEEEeehhccchh---hhhhhhccCccceEEE
Confidence 789999999999999999999999 8888875 5689999999866555 45666655 3333444
Q ss_pred --cCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEee
Q 018235 285 --SPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLE 340 (359)
Q Consensus 285 --sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~ 340 (359)
.|.+. +||+|+.||.|++||+......+..+..|...||.+++||--+++++...
T Consensus 304 Dld~~~~-~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssG 360 (406)
T KOG2919|consen 304 DLDPKGE-ILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSG 360 (406)
T ss_pred ecCCCCc-eeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccC
Confidence 57888 99999999999999999864667777889999999999998777776644
No 141
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=3.2e-15 Score=135.59 Aligned_cols=164 Identities=16% Similarity=0.214 Sum_probs=134.1
Q ss_pred EEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCC
Q 018235 160 RKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (359)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp 239 (359)
+.+--+|.|+++..+|.| ++++.|+..|.+++|.+.+ +..+.++.+|-..|++|.|+-
T Consensus 76 q~~v~Pg~v~al~s~n~G-~~l~ag~i~g~lYlWelss---------------------G~LL~v~~aHYQ~ITcL~fs~ 133 (476)
T KOG0646|consen 76 QYIVLPGPVHALASSNLG-YFLLAGTISGNLYLWELSS---------------------GILLNVLSAHYQSITCLKFSD 133 (476)
T ss_pred hhcccccceeeeecCCCc-eEEEeecccCcEEEEEecc---------------------ccHHHHHHhhccceeEEEEeC
Confidence 455668999999999999 8888888999999999998 788888999999999999999
Q ss_pred CCCCeEEEEcCCCcEEEEecCCC-----CcceecCccccCCCCCeEEEEecCCC-CCEEEEEeCCCcEEEEECCCCCCce
Q 018235 240 ITTGRLVTGDCNSCIYLWEPASD-----ATWNVDPNPFIGHSASVEDLQWSPTE-PDVFASCSVDGHIAIWDTRVGKSAL 313 (359)
Q Consensus 240 ~~~~~l~sgs~dg~I~lwd~~~~-----~~~~~~~~~~~~h~~~V~~v~~sp~~-~~~las~s~Dg~I~iwD~r~~~~~~ 313 (359)
++. +|+||+.||.|++|.+... .....+.+.|..|+-+|+++...+-+ ...++|+|.|.+|++||+-.+ ..+
T Consensus 134 dgs-~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g-~LL 211 (476)
T KOG0646|consen 134 DGS-HIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG-VLL 211 (476)
T ss_pred CCc-EEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc-eee
Confidence 999 9999999999999987431 11222346788999999999987763 238999999999999999997 555
Q ss_pred EEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEe
Q 018235 314 TSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILD 352 (359)
Q Consensus 314 ~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd 352 (359)
.++. ....++++...|.+..+..+.+ ++.|-+..
T Consensus 212 lti~-fp~si~av~lDpae~~~yiGt~----~G~I~~~~ 245 (476)
T KOG0646|consen 212 LTIT-FPSSIKAVALDPAERVVYIGTE----EGKIFQNL 245 (476)
T ss_pred EEEe-cCCcceeEEEcccccEEEecCC----cceEEeee
Confidence 5553 5667999999998888777765 55544433
No 142
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.65 E-value=4.1e-15 Score=140.66 Aligned_cols=158 Identities=13% Similarity=0.172 Sum_probs=132.6
Q ss_pred EEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEE
Q 018235 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAID 236 (359)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 236 (359)
+...+.+|+..|+++...|.+ .++||+.|.+|++|.-. ..+.+|.||++-|.+|+
T Consensus 132 l~~~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~~-----------------------~~l~tf~gHtD~VRgL~ 186 (745)
T KOG0301|consen 132 LVYSLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKGG-----------------------TLLKTFSGHTDCVRGLA 186 (745)
T ss_pred hhcccCCcchheeeeeecCCC--cEEeccCcceeeeccCC-----------------------chhhhhccchhheeeeE
Confidence 345578999999999999987 88999999999999753 45788999999999999
Q ss_pred eCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe
Q 018235 237 WNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF 316 (359)
Q Consensus 237 ~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~ 316 (359)
.-+.+ .|+||+.||.|++|++ + +..+ ..+.+|++-|++++..+.+. +++||+.|++++||+.. .+.+.+
T Consensus 187 vl~~~--~flScsNDg~Ir~w~~-~-ge~l---~~~~ghtn~vYsis~~~~~~-~Ivs~gEDrtlriW~~~---e~~q~I 255 (745)
T KOG0301|consen 187 VLDDS--HFLSCSNDGSIRLWDL-D-GEVL---LEMHGHTNFVYSISMALSDG-LIVSTGEDRTLRIWKKD---ECVQVI 255 (745)
T ss_pred EecCC--CeEeecCCceEEEEec-c-Ccee---eeeeccceEEEEEEecCCCC-eEEEecCCceEEEeecC---ceEEEE
Confidence 99876 5999999999999999 4 4444 57889999999999777777 99999999999999977 455666
Q ss_pred ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 317 KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 317 ~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
.-....|+++++=++|.+++.+ . |+.|+||-...
T Consensus 256 ~lPttsiWsa~~L~NgDIvvg~-S----DG~VrVfT~~k 289 (745)
T KOG0301|consen 256 TLPTTSIWSAKVLLNGDIVVGG-S----DGRVRVFTVDK 289 (745)
T ss_pred ecCccceEEEEEeeCCCEEEec-c----CceEEEEEecc
Confidence 5445579999998888876554 3 89999997653
No 143
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.65 E-value=1.3e-15 Score=136.03 Aligned_cols=158 Identities=20% Similarity=0.388 Sum_probs=129.8
Q ss_pred CCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCe
Q 018235 165 QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGR 244 (359)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~ 244 (359)
..+|..+.|.+...+.+|||+.|..|+||-+......... .....+..+..|...|+++.|+|.|. +
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~------------~~V~y~s~Ls~H~~aVN~vRf~p~ge-l 79 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD------------MKVEYLSSLSRHTRAVNVVRFSPDGE-L 79 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc------------eeEEEeecccCCcceeEEEEEcCCcC-e
Confidence 4688999998887569999999999999998763211100 01344567889999999999999999 9
Q ss_pred EEEEcCCCcEEEEecC--------C-----CCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCC
Q 018235 245 LVTGDCNSCIYLWEPA--------S-----DATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS 311 (359)
Q Consensus 245 l~sgs~dg~I~lwd~~--------~-----~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~ 311 (359)
||||+.+|.|.+|... + ...|++ .+.+.+|...|.+++|+|++. ++++++.|.++++||++.+ .
T Consensus 80 LASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v-~k~lr~h~~diydL~Ws~d~~-~l~s~s~dns~~l~Dv~~G-~ 156 (434)
T KOG1009|consen 80 LASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVV-KKVLRGHRDDIYDLAWSPDSN-FLVSGSVDNSVRLWDVHAG-Q 156 (434)
T ss_pred eeecCCCceEEEEEecCcCCccccchhhhCccceEE-EEEecccccchhhhhccCCCc-eeeeeeccceEEEEEeccc-e
Confidence 9999999999999765 1 123443 356778999999999999999 9999999999999999998 7
Q ss_pred ceEEeecCCCCEEEEEEcCCCCeEEEE
Q 018235 312 ALTSFKAHNADVNVISWNRCWLAVCWH 338 (359)
Q Consensus 312 ~~~~~~~h~~~V~~i~~s~~~~~l~~~ 338 (359)
....+..|...|+.++|.|.+++++.-
T Consensus 157 l~~~~~dh~~yvqgvawDpl~qyv~s~ 183 (434)
T KOG1009|consen 157 LLAILDDHEHYVQGVAWDPLNQYVASK 183 (434)
T ss_pred eEeeccccccccceeecchhhhhhhhh
Confidence 777789999999999999988876543
No 144
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=8.3e-15 Score=127.27 Aligned_cols=189 Identities=15% Similarity=0.168 Sum_probs=133.3
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccc--------cc-cccccccCCCCCC------CC
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNA--------LA-ESETIVGQGAPQV------SN 218 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~--------~~-~~~~~~~~~~~~~------~~ 218 (359)
.|.....+.+|.+.|++++|+.+| ..+||++.|+.|+||+++...+. +. .+...+.+..+-. ..
T Consensus 75 Hpl~~~~LKgH~~~vt~~~FsSdG-K~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~ 153 (420)
T KOG2096|consen 75 HPLNVSVLKGHKKEVTDVAFSSDG-KKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKR 153 (420)
T ss_pred cchhhhhhhccCCceeeeEEcCCC-ceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEcc
Confidence 344556778999999999999999 89999999999999999873321 00 0111111111000 00
Q ss_pred CCCcE-----------------------EecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCC
Q 018235 219 QSPLV-----------------------KFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGH 275 (359)
Q Consensus 219 ~~~~~-----------------------~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h 275 (359)
+..++ .-..|...+..+-..-.+. +|+|++.|..|+||+++ ++.+ ..+...
T Consensus 154 g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k-~imsas~dt~i~lw~lk--Gq~L---~~idtn 227 (420)
T KOG2096|consen 154 GNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAK-YIMSASLDTKICLWDLK--GQLL---QSIDTN 227 (420)
T ss_pred CCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCce-EEEEecCCCcEEEEecC--Ccee---eeeccc
Confidence 11111 1123444455555555665 99999999999999997 4443 444445
Q ss_pred CCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCC-----C--CceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEE
Q 018235 276 SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG-----K--SALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLF 348 (359)
Q Consensus 276 ~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~-----~--~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i 348 (359)
...-+..+.||+|. ++|+++..--|++|.+--. + ..+..+.+|.+.|..++||+++..++.... |+.+
T Consensus 228 q~~n~~aavSP~GR-Fia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSk----DG~w 302 (420)
T KOG2096|consen 228 QSSNYDAAVSPDGR-FIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSK----DGKW 302 (420)
T ss_pred cccccceeeCCCCc-EEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEec----CCcE
Confidence 56667788999999 9999999889999975322 1 245667999999999999999999888876 9999
Q ss_pred EEEeCc
Q 018235 349 MILDCS 354 (359)
Q Consensus 349 ~iwd~~ 354 (359)
++||+.
T Consensus 303 riwdtd 308 (420)
T KOG2096|consen 303 RIWDTD 308 (420)
T ss_pred EEeecc
Confidence 999864
No 145
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.64 E-value=1.4e-14 Score=125.92 Aligned_cols=214 Identities=12% Similarity=0.164 Sum_probs=166.5
Q ss_pred cccCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCC
Q 018235 64 HIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDED 143 (359)
Q Consensus 64 ~~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d 143 (359)
.+--|..+--|-+|. ..++++. ..+.|.|+++.+-
T Consensus 8 ~~~~pitchAwn~dr-----------t~iAv~~-----~~~evhiy~~~~~----------------------------- 42 (361)
T KOG1523|consen 8 RLLEPITCHAWNSDR-----------TQIAVSP-----NNHEVHIYSMLGA----------------------------- 42 (361)
T ss_pred eccCceeeeeecCCC-----------ceEEecc-----CCceEEEEEecCC-----------------------------
Confidence 344566666677763 4566666 3568999998410
Q ss_pred CCcccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcE
Q 018235 144 SDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLV 223 (359)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (359)
.-....+.+..|...|+.|.|.|.. +.|+||+.|..-++|...... ..+|..
T Consensus 43 ---------~~w~~~htls~Hd~~vtgvdWap~s-nrIvtcs~drnayVw~~~~~~------------------~Wkptl 94 (361)
T KOG1523|consen 43 ---------DLWEPAHTLSEHDKIVTGVDWAPKS-NRIVTCSHDRNAYVWTQPSGG------------------TWKPTL 94 (361)
T ss_pred ---------CCceeceehhhhCcceeEEeecCCC-CceeEccCCCCccccccCCCC------------------eeccce
Confidence 0245567888999999999999998 789999999999999984311 367888
Q ss_pred EecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEE
Q 018235 224 KFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAI 303 (359)
Q Consensus 224 ~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~i 303 (359)
.+..|.....++.|+|... .||+|+....|.||=+.....|-+....-..+.+.|.++.|+|++- ++|+||.|+.+|+
T Consensus 95 vLlRiNrAAt~V~WsP~en-kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnV-LlaaGs~D~k~rV 172 (361)
T KOG1523|consen 95 VLLRINRAATCVKWSPKEN-KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNV-LLAAGSTDGKCRV 172 (361)
T ss_pred eEEEeccceeeEeecCcCc-eEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcc-eecccccCcceeE
Confidence 8888999999999999998 9999999999999988776667554455566889999999999998 9999999999999
Q ss_pred EECC-----CC------------CCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 304 WDTR-----VG------------KSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 304 wD~r-----~~------------~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
+..- .. ...+..+....+.|..+.|+|.|..|+|... |..+.+-|....
T Consensus 173 fSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~H----ds~v~~~da~~p 238 (361)
T KOG1523|consen 173 FSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGH----DSTVSFVDAAGP 238 (361)
T ss_pred EEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecC----CCceEEeecCCC
Confidence 8432 11 0122233345678999999999999999877 777887776544
No 146
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.64 E-value=9.4e-15 Score=137.05 Aligned_cols=173 Identities=14% Similarity=0.213 Sum_probs=130.1
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCc--EEecCCCCceEEEE
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPL--VKFGGHKDEGYAID 236 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~h~~~v~~l~ 236 (359)
.....|.+.|..+.|.| +...|++++.|.++++||+.. ...+ ..+.||...+-+++
T Consensus 94 k~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~---------------------s~l~G~~~~~GH~~SvkS~c 151 (720)
T KOG0321|consen 94 KKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKT---------------------SRLVGGRLNLGHTGSVKSEC 151 (720)
T ss_pred cccccccceeEeeccCC-CceeEEEccCCceeeeeeecc---------------------ceeecceeecccccccchhh
Confidence 45668999999999999 668999999999999999987 2332 35889999999999
Q ss_pred eCCCCCCeEEEEcCCCcEEEEecCCCCc-------------ce---ecC-------ccccCCCCCeEE---EEecCCCCC
Q 018235 237 WNPITTGRLVTGDCNSCIYLWEPASDAT-------------WN---VDP-------NPFIGHSASVED---LQWSPTEPD 290 (359)
Q Consensus 237 ~sp~~~~~l~sgs~dg~I~lwd~~~~~~-------------~~---~~~-------~~~~~h~~~V~~---v~~sp~~~~ 290 (359)
|+|..+..|++|+.||.|.|||++..+. .. .+. +.-.+|...|.. +-+..++.
T Consensus 152 f~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~- 230 (720)
T KOG0321|consen 152 FMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDES- 230 (720)
T ss_pred hccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccc-
Confidence 9999999999999999999999985320 00 001 111234444444 55556666
Q ss_pred EEEEEeC-CCcEEEEECCCCC-----CceE--EeecC---CCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 291 VFASCSV-DGHIAIWDTRVGK-----SALT--SFKAH---NADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 291 ~las~s~-Dg~I~iwD~r~~~-----~~~~--~~~~h---~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
.||+++. |+.|+|||+|... .+.. .+..| .-.+.++.....|.+|...+. |+.|.+|++.+..+
T Consensus 231 tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt----D~sIy~ynm~s~s~ 305 (720)
T KOG0321|consen 231 TLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT----DNSIYFYNMRSLSI 305 (720)
T ss_pred eeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec----CCcEEEEeccccCc
Confidence 7888887 9999999999862 1221 22233 335778888888999998887 99999999887554
No 147
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.63 E-value=2.8e-14 Score=137.50 Aligned_cols=157 Identities=17% Similarity=0.220 Sum_probs=129.1
Q ss_pred ecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCC
Q 018235 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPIT 241 (359)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~ 241 (359)
..|.++|..++....+ .++++++.+|.+.+||+.. ..++..+. -..++.++..+...
T Consensus 490 ~ah~~~V~gla~D~~n-~~~vsa~~~Gilkfw~f~~---------------------k~l~~~l~-l~~~~~~iv~hr~s 546 (910)
T KOG1539|consen 490 PAHKGEVTGLAVDGTN-RLLVSAGADGILKFWDFKK---------------------KVLKKSLR-LGSSITGIVYHRVS 546 (910)
T ss_pred ccccCceeEEEecCCC-ceEEEccCcceEEEEecCC---------------------cceeeeec-cCCCcceeeeeehh
Confidence 4899999999998877 7899999999999999987 23334443 23467778888777
Q ss_pred CCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCC
Q 018235 242 TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNA 321 (359)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~ 321 (359)
. .++.+..|-.|.++|..+ .+.+ +.|.||+..|++++|||+|+ .|++++.|++||+||+-++ ..+-.+ .-..
T Consensus 547 ~-l~a~~~ddf~I~vvD~~t-~kvv---R~f~gh~nritd~~FS~Dgr-WlisasmD~tIr~wDlpt~-~lID~~-~vd~ 618 (910)
T KOG1539|consen 547 D-LLAIALDDFSIRVVDVVT-RKVV---REFWGHGNRITDMTFSPDGR-WLISASMDSTIRTWDLPTG-TLIDGL-LVDS 618 (910)
T ss_pred h-hhhhhcCceeEEEEEchh-hhhh---HHhhccccceeeeEeCCCCc-EEEEeecCCcEEEEeccCc-ceeeeE-ecCC
Confidence 6 889998899999999976 4443 88999999999999999999 9999999999999999997 444444 3566
Q ss_pred CEEEEEEcCCCCeEEEEeeecccceEEEEEe
Q 018235 322 DVNVISWNRCWLAVCWHLEVMMEHFLFMILD 352 (359)
Q Consensus 322 ~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd 352 (359)
+...++|+|+|.+|++.... .+-|.+|-
T Consensus 619 ~~~sls~SPngD~LAT~Hvd---~~gIylWs 646 (910)
T KOG1539|consen 619 PCTSLSFSPNGDFLATVHVD---QNGIYLWS 646 (910)
T ss_pred cceeeEECCCCCEEEEEEec---CceEEEEE
Confidence 78999999999999988762 35588884
No 148
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=2.6e-14 Score=132.53 Aligned_cols=179 Identities=18% Similarity=0.235 Sum_probs=139.7
Q ss_pred EEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEE
Q 018235 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAID 236 (359)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 236 (359)
-+.++.+|.|+|-|+.+.+.+ ..+.+|+-||+|+.|++.......... .......++.||++.++.++
T Consensus 336 pi~tfraH~gPVl~v~v~~n~-~~~ysgg~Dg~I~~w~~p~n~dp~ds~-----------dp~vl~~~l~Ghtdavw~l~ 403 (577)
T KOG0642|consen 336 PILTFRAHEGPVLCVVVPSNG-EHCYSGGIDGTIRCWNLPPNQDPDDSY-----------DPSVLSGTLLGHTDAVWLLA 403 (577)
T ss_pred eeEEEecccCceEEEEecCCc-eEEEeeccCceeeeeccCCCCCccccc-----------Ccchhccceeccccceeeee
Confidence 346788999999999999988 899999999999999887311110000 01233457899999999999
Q ss_pred eCCCCCCeEEEEcCCCcEEEEecCCCCccee------------c----------------------------Ccccc---
Q 018235 237 WNPITTGRLVTGDCNSCIYLWEPASDATWNV------------D----------------------------PNPFI--- 273 (359)
Q Consensus 237 ~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~------------~----------------------------~~~~~--- 273 (359)
+|+... +|++|+.||++++|.+.....+.. . ...+.
T Consensus 404 ~s~~~~-~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~ 482 (577)
T KOG0642|consen 404 LSSTKD-RLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSA 482 (577)
T ss_pred eccccc-ceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccC
Confidence 999987 899999999999998864211000 0 00000
Q ss_pred ----CCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEE
Q 018235 274 ----GHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFM 349 (359)
Q Consensus 274 ----~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~ 349 (359)
.....++-|.++|+.. +.+++..|+.|+++|..++ .+++...+|...++++++.|+|.+|+.+.. |+.++
T Consensus 483 ~~~~~~~~~in~vVs~~~~~-~~~~~hed~~Ir~~dn~~~-~~l~s~~a~~~svtslai~~ng~~l~s~s~----d~sv~ 556 (577)
T KOG0642|consen 483 SPGPRRYPQINKVVSHPTAD-ITFTAHEDRSIRFFDNKTG-KILHSMVAHKDSVTSLAIDPNGPYLMSGSH----DGSVR 556 (577)
T ss_pred CCcccccCccceEEecCCCC-eeEecccCCceeccccccc-ccchheeeccceecceeecCCCceEEeecC----Cceee
Confidence 0123467788999997 9999999999999999998 888889999999999999999999998877 88899
Q ss_pred EEeCc
Q 018235 350 ILDCS 354 (359)
Q Consensus 350 iwd~~ 354 (359)
+|...
T Consensus 557 l~kld 561 (577)
T KOG0642|consen 557 LWKLD 561 (577)
T ss_pred hhhcc
Confidence 99763
No 149
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.61 E-value=5.7e-14 Score=135.48 Aligned_cols=188 Identities=20% Similarity=0.250 Sum_probs=138.0
Q ss_pred EEEecCCCceeeEEEeCCC-CcEEEEEeCCCcEEEEECCCCccccccc-----c----------c--ccc----------
Q 018235 159 LRKVAHQGCVNRIRAMTQN-PHICASWADTGHVQVWDLRSHLNALAES-----E----------T--IVG---------- 210 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~-~~~lat~s~dg~V~iwd~~~~~~~~~~~-----~----------~--~~~---------- 210 (359)
.....|..+|+.+.|.... +.-|++++.||.|..|+++......... . . ...
T Consensus 285 ~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~Fi 364 (555)
T KOG1587|consen 285 ALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFI 364 (555)
T ss_pred cccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEE
Confidence 4445799999999997644 1458888889999999876522110000 0 0 000
Q ss_pred --CCCCCC---------CCC----CCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCC
Q 018235 211 --QGAPQV---------SNQ----SPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGH 275 (359)
Q Consensus 211 --~~~~~~---------~~~----~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h 275 (359)
...+.+ ... +++..+..|.+.|+++.++|.+.-.|+|++ |.+++||.......++ ..+..+
T Consensus 365 VGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl---~~~~~~ 440 (555)
T KOG1587|consen 365 VGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPL---LSLDSS 440 (555)
T ss_pred EEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcc---hhhhhc
Confidence 000000 111 335567778899999999999986666666 9999999876323343 556678
Q ss_pred CCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCC-CCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 276 SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG-KSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 276 ~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~-~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
...|.+++|||..+.+||++..||.|.|||++.. ..|+.+...+....+.+.|++.|++++.+.. .+.+.+|+..
T Consensus 441 ~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~----~G~~~~~~l~ 516 (555)
T KOG1587|consen 441 PDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDA----NGTTHILKLS 516 (555)
T ss_pred cceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecC----CCcEEEEEcC
Confidence 8889999999999999999999999999999876 3577777777778899999999999999987 6778888875
No 150
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.61 E-value=1.1e-13 Score=126.87 Aligned_cols=196 Identities=13% Similarity=0.188 Sum_probs=152.1
Q ss_pred EeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCC
Q 018235 75 VRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGGSGT 154 (359)
Q Consensus 75 ~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~~~~~~~~ 154 (359)
+|+..|..|.-++..--+++|| ..|.|.--.++
T Consensus 325 lPe~~G~iRtv~e~~~di~vGT-----trN~iL~Gt~~------------------------------------------ 357 (626)
T KOG2106|consen 325 LPEQFGPIRTVAEGKGDILVGT-----TRNFILQGTLE------------------------------------------ 357 (626)
T ss_pred CchhcCCeeEEecCCCcEEEee-----ccceEEEeeec------------------------------------------
Confidence 4666677776666555588888 46677655552
Q ss_pred CeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEE
Q 018235 155 PILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYA 234 (359)
Q Consensus 155 ~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 234 (359)
.-.....++|....+.++.+|.. ..++|++.|+.|+||+ . .++..+.. -..++.+
T Consensus 358 ~~f~~~v~gh~delwgla~hps~-~q~~T~gqdk~v~lW~--~---------------------~k~~wt~~-~~d~~~~ 412 (626)
T KOG2106|consen 358 NGFTLTVQGHGDELWGLATHPSK-NQLLTCGQDKHVRLWN--D---------------------HKLEWTKI-IEDPAEC 412 (626)
T ss_pred CCceEEEEecccceeeEEcCCCh-hheeeccCcceEEEcc--C---------------------CceeEEEE-ecCceeE
Confidence 12335667999999999999998 7999999999999999 3 24444433 2458889
Q ss_pred EEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceE
Q 018235 235 IDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALT 314 (359)
Q Consensus 235 l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~ 314 (359)
++|+|.+ .+|.|...|...+.|..+ ...+ .+.....+++++.|+|+|. +||.|+.|+.|.||-+........
T Consensus 413 ~~fhpsg--~va~Gt~~G~w~V~d~e~-~~lv----~~~~d~~~ls~v~ysp~G~-~lAvgs~d~~iyiy~Vs~~g~~y~ 484 (626)
T KOG2106|consen 413 ADFHPSG--VVAVGTATGRWFVLDTET-QDLV----TIHTDNEQLSVVRYSPDGA-FLAVGSHDNHIYIYRVSANGRKYS 484 (626)
T ss_pred eeccCcc--eEEEeeccceEEEEeccc-ceeE----EEEecCCceEEEEEcCCCC-EEEEecCCCeEEEEEECCCCcEEE
Confidence 9999998 799999999999999876 3332 2222378999999999999 999999999999999887644554
Q ss_pred Ee-ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 315 SF-KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 315 ~~-~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
.+ .-|.++|+.+.|+++++++..... |..|..|..+
T Consensus 485 r~~k~~gs~ithLDwS~Ds~~~~~~S~----d~eiLyW~~~ 521 (626)
T KOG2106|consen 485 RVGKCSGSPITHLDWSSDSQFLVSNSG----DYEILYWKPS 521 (626)
T ss_pred EeeeecCceeEEeeecCCCceEEeccC----ceEEEEEccc
Confidence 44 445689999999999999987765 8889999554
No 151
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=4.1e-14 Score=137.75 Aligned_cols=159 Identities=18% Similarity=0.250 Sum_probs=115.2
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
..+++|.++|.++.|.|++ +++|+.+-||.|+||++....-...-.+ ..+...+. ....+.-++|+
T Consensus 132 ~~lrgh~apVl~l~~~p~~-~fLAvss~dG~v~iw~~~~~~~~~tl~~------------v~k~n~~~-~s~i~~~~aW~ 197 (933)
T KOG1274|consen 132 KVLRGHDAPVLQLSYDPKG-NFLAVSSCDGKVQIWDLQDGILSKTLTG------------VDKDNEFI-LSRICTRLAWH 197 (933)
T ss_pred eeecccCCceeeeeEcCCC-CEEEEEecCceEEEEEcccchhhhhccc------------CCcccccc-ccceeeeeeec
Confidence 5678999999999999999 8999999999999999987321110000 01111111 13456678999
Q ss_pred CCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeec
Q 018235 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA 318 (359)
Q Consensus 239 p~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~ 318 (359)
|++. .|+....|+.|++|+... .......+ ...+.+.+.+++|+|+|. +||+++.||.|.|||..+. .. ..
T Consensus 198 Pk~g-~la~~~~d~~Vkvy~r~~-we~~f~Lr-~~~~ss~~~~~~wsPnG~-YiAAs~~~g~I~vWnv~t~-~~----~~ 268 (933)
T KOG1274|consen 198 PKGG-TLAVPPVDNTVKVYSRKG-WELQFKLR-DKLSSSKFSDLQWSPNGK-YIAASTLDGQILVWNVDTH-ER----HE 268 (933)
T ss_pred CCCC-eEEeeccCCeEEEEccCC-ceeheeec-ccccccceEEEEEcCCCc-EEeeeccCCcEEEEecccc-hh----cc
Confidence 9986 788888899999999765 33221111 122445599999999999 9999999999999999974 11 22
Q ss_pred CCCCEEEEEEcCCCCeEEEEee
Q 018235 319 HNADVNVISWNRCWLAVCWHLE 340 (359)
Q Consensus 319 h~~~V~~i~~s~~~~~l~~~~~ 340 (359)
....|.|++|.|+...+.+...
T Consensus 269 ~~~~Vc~~aw~p~~n~it~~~~ 290 (933)
T KOG1274|consen 269 FKRAVCCEAWKPNANAITLITA 290 (933)
T ss_pred ccceeEEEecCCCCCeeEEEee
Confidence 3456999999999887766554
No 152
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.59 E-value=9.2e-15 Score=136.99 Aligned_cols=152 Identities=16% Similarity=0.256 Sum_probs=124.3
Q ss_pred EeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCC
Q 018235 184 WADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDA 263 (359)
Q Consensus 184 ~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~ 263 (359)
.+.-|.|-||+++...+... ..+-.+ .....|+.+.|.|....+||.+..||.|+||.+..++
T Consensus 599 ~g~gG~iai~el~~PGrLPD----------------gv~p~l-~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~g 661 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLPD----------------GVMPGL-FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANG 661 (1012)
T ss_pred cCCCceEEEEEcCCCCCCCc----------------cccccc-ccCceeeecccCCCChHHeeecccCceEEEEEeccCC
Confidence 45579999999998432211 111112 1245789999999988899999999999999987643
Q ss_pred c---ceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEee
Q 018235 264 T---WNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLE 340 (359)
Q Consensus 264 ~---~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~ 340 (359)
- ...+...+.+|...|+.+.|||--..+||+++.|-+|+|||+++. .....+.+|...|..++|+|+|+.++..+.
T Consensus 662 l~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~-~~~~~l~gHtdqIf~~AWSpdGr~~AtVcK 740 (1012)
T KOG1445|consen 662 LPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANA-KLYSRLVGHTDQIFGIAWSPDGRRIATVCK 740 (1012)
T ss_pred CCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhh-hhhheeccCcCceeEEEECCCCcceeeeec
Confidence 2 222345678999999999999998889999999999999999998 667788999999999999999999998887
Q ss_pred ecccceEEEEEeCcCCc
Q 018235 341 VMMEHFLFMILDCSRGE 357 (359)
Q Consensus 341 ~~~~d~~i~iwd~~~g~ 357 (359)
|+.|++++++.++
T Consensus 741 ----Dg~~rVy~Prs~e 753 (1012)
T KOG1445|consen 741 ----DGTLRVYEPRSRE 753 (1012)
T ss_pred ----CceEEEeCCCCCC
Confidence 9999999998875
No 153
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.59 E-value=6.9e-14 Score=129.04 Aligned_cols=159 Identities=12% Similarity=0.181 Sum_probs=120.1
Q ss_pred CCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccC-------CCCCCCCCCCcEEecCCCCceEEEEe
Q 018235 165 QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQ-------GAPQVSNQSPLVKFGGHKDEGYAIDW 237 (359)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (359)
+..|++|+|-|.++.+|..+..+|.+++||...........-...+. .........|+..+.--...|+.++|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 47899999999888888888999999999874321111111111110 00001223677666666678999999
Q ss_pred CCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEee
Q 018235 238 NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK 317 (359)
Q Consensus 238 sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~ 317 (359)
+|++. +||+.+.||.++||+..+ ...+ ..+...-+...||+|||+++ +|++|+.|-.|.||.+... +.+..-.
T Consensus 299 S~DG~-~LA~VSqDGfLRvF~fdt-~eLl---g~mkSYFGGLLCvcWSPDGK-yIvtGGEDDLVtVwSf~er-RVVARGq 371 (636)
T KOG2394|consen 299 SPDGK-YLATVSQDGFLRIFDFDT-QELL---GVMKSYFGGLLCVCWSPDGK-YIVTGGEDDLVTVWSFEER-RVVARGQ 371 (636)
T ss_pred cCCCc-eEEEEecCceEEEeeccH-HHHH---HHHHhhccceEEEEEcCCcc-EEEecCCcceEEEEEeccc-eEEEecc
Confidence 99998 999999999999999976 3332 23333447889999999999 9999999999999999986 6676779
Q ss_pred cCCCCEEEEEEcC
Q 018235 318 AHNADVNVISWNR 330 (359)
Q Consensus 318 ~h~~~V~~i~~s~ 330 (359)
+|.++|+.++|.|
T Consensus 372 GHkSWVs~VaFDp 384 (636)
T KOG2394|consen 372 GHKSWVSVVAFDP 384 (636)
T ss_pred ccccceeeEeecc
Confidence 9999999999984
No 154
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=2.8e-13 Score=113.83 Aligned_cols=208 Identities=15% Similarity=0.187 Sum_probs=133.4
Q ss_pred ceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCeEEEEEecCCCc
Q 018235 88 HTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGC 167 (359)
Q Consensus 88 ~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~H~~~ 167 (359)
..+||++|. ....|.|+++..+-... . ++ +....+....+|.++
T Consensus 21 ~~~~l~agn-----~~G~iav~sl~sl~s~s------------------------a----~~---~gk~~iv~eqahdgp 64 (325)
T KOG0649|consen 21 SKQYLFAGN-----LFGDIAVLSLKSLDSGS------------------------A----EP---PGKLKIVPEQAHDGP 64 (325)
T ss_pred cceEEEEec-----CCCeEEEEEehhhhccc------------------------c----CC---CCCcceeeccccCCC
Confidence 347899988 45689999985331110 0 11 122233455799999
Q ss_pred eeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEE
Q 018235 168 VNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVT 247 (359)
Q Consensus 168 V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s 247 (359)
|+.++|.. .++.+|++ |.|+-|..+............. ...|.++-...-.+|++|...|... -++.
T Consensus 65 iy~~~f~d---~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe--------~~~P~~~~~~evPeINam~ldP~en-Si~~ 131 (325)
T KOG0649|consen 65 IYYLAFHD---DFLLSGGD-GLVYGWEWNEEEESLATKRLWE--------VKIPMQVDAVEVPEINAMWLDPSEN-SILF 131 (325)
T ss_pred eeeeeeeh---hheeeccC-ceEEEeeehhhhhhccchhhhh--------hcCccccCcccCCccceeEeccCCC-cEEE
Confidence 99999983 46667664 9999998876433211111100 0122222122234899999998887 4444
Q ss_pred EcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEee--cCC-----
Q 018235 248 GDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK--AHN----- 320 (359)
Q Consensus 248 gs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~--~h~----- 320 (359)
++.|+.|+-||+.+ ++.. +.|.||+..|.++.--.... -++||+.||++||||+++. +++..+. .|.
T Consensus 132 AgGD~~~y~~dlE~-G~i~---r~~rGHtDYvH~vv~R~~~~-qilsG~EDGtvRvWd~kt~-k~v~~ie~yk~~~~lRp 205 (325)
T KOG0649|consen 132 AGGDGVIYQVDLED-GRIQ---REYRGHTDYVHSVVGRNANG-QILSGAEDGTVRVWDTKTQ-KHVSMIEPYKNPNLLRP 205 (325)
T ss_pred ecCCeEEEEEEecC-CEEE---EEEcCCcceeeeeeecccCc-ceeecCCCccEEEEecccc-ceeEEeccccChhhcCc
Confidence 55799999999987 6654 78999999999998733333 6899999999999999998 6665552 221
Q ss_pred ---CCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 321 ---ADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 321 ---~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
..|-+++ -+..+++++. ...+.+|..+..+
T Consensus 206 ~~g~wigala--~~edWlvCGg-----Gp~lslwhLrsse 238 (325)
T KOG0649|consen 206 DWGKWIGALA--VNEDWLVCGG-----GPKLSLWHLRSSE 238 (325)
T ss_pred ccCceeEEEe--ccCceEEecC-----CCceeEEeccCCC
Confidence 2233333 3455665553 3457788876644
No 155
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.58 E-value=3.1e-14 Score=134.71 Aligned_cols=168 Identities=16% Similarity=0.218 Sum_probs=135.0
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCC-----CcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceE
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADT-----GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~d-----g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (359)
.++++|.-.|.+++.+|.+ +++||++.. ..|++|+... ...+..+.+|.-.|+
T Consensus 519 ~KLYGHGyEv~~l~~s~~g-nliASaCKS~~~ehAvI~lw~t~~---------------------W~~~~~L~~HsLTVT 576 (764)
T KOG1063|consen 519 HKLYGHGYEVYALAISPTG-NLIASACKSSLKEHAVIRLWNTAN---------------------WLQVQELEGHSLTVT 576 (764)
T ss_pred HHhccCceeEEEEEecCCC-CEEeehhhhCCccceEEEEEeccc---------------------hhhhheecccceEEE
Confidence 5678999999999999999 899998754 4578999887 566678999999999
Q ss_pred EEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCC-Cc
Q 018235 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK-SA 312 (359)
Q Consensus 234 ~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~-~~ 312 (359)
.|+|||+++ +|++.+.|+++.+|.................|+..|.++.|+|++. .|||+|.|++|++|-..... +.
T Consensus 577 ~l~FSpdg~-~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~-~FaTaSRDK~VkVW~~~~~~d~~ 654 (764)
T KOG1063|consen 577 RLAFSPDGR-YLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEK-YFATASRDKKVKVWEEPDLRDKY 654 (764)
T ss_pred EEEECCCCc-EEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccc-eeEEecCCceEEEEeccCchhhh
Confidence 999999999 9999999999999988553332222233667999999999999998 79999999999999877651 22
Q ss_pred eE--EeecCCCCEEEEEEcCC-----CCeEEEEeeecccceEEEEEeCc
Q 018235 313 LT--SFKAHNADVNVISWNRC-----WLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 313 ~~--~~~~h~~~V~~i~~s~~-----~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
+. ....+...|+.++|.|- +..++.+++ .+.|.+|...
T Consensus 655 i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle----~GeI~l~~~~ 699 (764)
T KOG1063|consen 655 ISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLE----KGEIVLWRRK 699 (764)
T ss_pred hhhhchhccCCceeeEEeeccccccccceEEEEec----ccEEEEEecc
Confidence 22 23568889999999873 235677776 6778888744
No 156
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=6.6e-15 Score=135.97 Aligned_cols=173 Identities=20% Similarity=0.241 Sum_probs=132.1
Q ss_pred EEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcE-EecCCCCceEEE
Q 018235 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLV-KFGGHKDEGYAI 235 (359)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l 235 (359)
++..+.+|+|+||++.|+.+| .++++|++|-.+.|||... .++++ +-.||...|+++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG-~lL~SGSDD~r~ivWd~~~---------------------~KllhsI~TgHtaNIFsv 99 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADG-ELLASGSDDTRLIVWDPFE---------------------YKLLHSISTGHTANIFSV 99 (758)
T ss_pred hhhhhccccceecceeecCCC-CEEeecCCcceEEeecchh---------------------cceeeeeecccccceeEE
Confidence 345677999999999999999 8999999999999999876 35554 447999999999
Q ss_pred EeCCCCCC-eEEEEcCCCcEEEEecCCCC------cceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCC
Q 018235 236 DWNPITTG-RLVTGDCNSCIYLWEPASDA------TWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV 308 (359)
Q Consensus 236 ~~sp~~~~-~l~sgs~dg~I~lwd~~~~~------~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~ 308 (359)
.|-|.... +++||+.|..|+++|+.... ......+.+..|...|-.|+-.|.++++|.+|+.||+|+-+|+|.
T Consensus 100 KFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiRE 179 (758)
T KOG1310|consen 100 KFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE 179 (758)
T ss_pred eeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence 99886433 78999999999999997421 122223556789999999999999999999999999999999998
Q ss_pred CCCceEEe-------ecC--CCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 309 GKSALTSF-------KAH--NADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 309 ~~~~~~~~-------~~h--~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
...+-... .-+ --...|+..||....++.-..+ +-..+++|.+
T Consensus 180 ph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgs---dpfarLYD~R 231 (758)
T KOG1310|consen 180 PHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGS---DPFARLYDRR 231 (758)
T ss_pred CccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCC---Cchhhhhhhh
Confidence 52111111 111 1245788999987655443332 7777888744
No 157
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.58 E-value=2.9e-14 Score=129.17 Aligned_cols=172 Identities=12% Similarity=0.152 Sum_probs=135.8
Q ss_pred EecCCCceeeEEEeCCCC-cEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCC
Q 018235 161 KVAHQGCVNRIRAMTQNP-HICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (359)
Q Consensus 161 ~~~H~~~V~~i~~~p~~~-~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp 239 (359)
...|.+.|++++|+|..+ .++|+|..-|+|-+||+..+.. ...-+..|..|..+|.+|.|+|
T Consensus 182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~-----------------d~d~v~~f~~hs~~Vs~l~F~P 244 (498)
T KOG4328|consen 182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK-----------------DKDGVYLFTPHSGPVSGLKFSP 244 (498)
T ss_pred eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC-----------------ccCceEEeccCCccccceEecC
Confidence 346899999999999886 8999999999999999964211 1344678899999999999999
Q ss_pred CCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecC
Q 018235 240 ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAH 319 (359)
Q Consensus 240 ~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h 319 (359)
.+..++++.|.||+|++-|+... .... ...+........+++|+.... .++.+..=|...+||+|+.+.....+.-|
T Consensus 245 ~n~s~i~ssSyDGtiR~~D~~~~-i~e~-v~s~~~d~~~fs~~d~~~e~~-~vl~~~~~G~f~~iD~R~~~s~~~~~~lh 321 (498)
T KOG4328|consen 245 ANTSQIYSSSYDGTIRLQDFEGN-ISEE-VLSLDTDNIWFSSLDFSAESR-SVLFGDNVGNFNVIDLRTDGSEYENLRLH 321 (498)
T ss_pred CChhheeeeccCceeeeeeecch-hhHH-HhhcCccceeeeeccccCCCc-cEEEeecccceEEEEeecCCccchhhhhh
Confidence 99989999999999999999762 2110 111222445678889988888 44455555599999999985556667778
Q ss_pred CCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 320 NADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 320 ~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
...|++|++||...+++.+... |.+.+|||.+.
T Consensus 322 ~kKI~sv~~NP~~p~~laT~s~---D~T~kIWD~R~ 354 (498)
T KOG4328|consen 322 KKKITSVALNPVCPWFLATASL---DQTAKIWDLRQ 354 (498)
T ss_pred hcccceeecCCCCchheeeccc---Ccceeeeehhh
Confidence 8899999999999877766554 99999999875
No 158
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=1.9e-13 Score=118.96 Aligned_cols=165 Identities=14% Similarity=0.168 Sum_probs=120.5
Q ss_pred CCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCe
Q 018235 165 QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGR 244 (359)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~ 244 (359)
...-...+.+|+| .++|+++-.-.|++|..-... ++.......++.++||...|.+++||++.+ +
T Consensus 228 q~~n~~aavSP~G-RFia~~gFTpDVkVwE~~f~k-------------dG~fqev~rvf~LkGH~saV~~~aFsn~S~-r 292 (420)
T KOG2096|consen 228 QSSNYDAAVSPDG-RFIAVSGFTPDVKVWEPIFTK-------------DGTFQEVKRVFSLKGHQSAVLAAAFSNSST-R 292 (420)
T ss_pred cccccceeeCCCC-cEEEEecCCCCceEEEEEecc-------------CcchhhhhhhheeccchhheeeeeeCCCcc-e
Confidence 3445567899999 889999999999999865411 001113456789999999999999999998 9
Q ss_pred EEEEcCCCcEEEEecCCCC------cce-ecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe-
Q 018235 245 LVTGDCNSCIYLWEPASDA------TWN-VDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF- 316 (359)
Q Consensus 245 l~sgs~dg~I~lwd~~~~~------~~~-~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~- 316 (359)
++|.+.||+++|||+.-.- ..+ .-..++....+.-..+..+|.+. +||.. ...+|+++..+.+ +..-.+
T Consensus 293 ~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~-~lA~s-~gs~l~~~~se~g-~~~~~~e 369 (420)
T KOG2096|consen 293 AVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGD-SLAVS-FGSDLKVFASEDG-KDYPELE 369 (420)
T ss_pred eEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCc-EEEee-cCCceEEEEcccC-ccchhHH
Confidence 9999999999999986321 111 01122333334444799999998 66543 4467999999997 444444
Q ss_pred ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEe
Q 018235 317 KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILD 352 (359)
Q Consensus 317 ~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd 352 (359)
..|...|.+|+|+++|++++... +..++++.
T Consensus 370 ~~h~~~Is~is~~~~g~~~atcG-----dr~vrv~~ 400 (420)
T KOG2096|consen 370 DIHSTTISSISYSSDGKYIATCG-----DRYVRVIR 400 (420)
T ss_pred HhhcCceeeEEecCCCcEEeeec-----ceeeeeec
Confidence 78999999999999999988664 55677664
No 159
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=2.7e-14 Score=132.43 Aligned_cols=180 Identities=18% Similarity=0.330 Sum_probs=137.4
Q ss_pred EEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEE
Q 018235 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAID 236 (359)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 236 (359)
+..++..|..+|..+.|.|.. ..|++++.+|.+.+|++..... . .....+|+.+|.+|.++|.|++
T Consensus 286 ik~tl~s~~d~ir~l~~~~se-p~lit~sed~~lk~WnLqk~~~---s----------~~~~~epi~tfraH~gPVl~v~ 351 (577)
T KOG0642|consen 286 IKFTLRSHDDCIRALAFHPSE-PVLITASEDGTLKLWNLQKAKK---S----------AEKDVEPILTFRAHEGPVLCVV 351 (577)
T ss_pred eeeeeecchhhhhhhhcCCCC-CeEEEeccccchhhhhhcccCC---c----------cccceeeeEEEecccCceEEEE
Confidence 335778899999999999988 5889999999999999944100 0 0013689999999999999999
Q ss_pred eCCCCCCeEEEEcCCCcEEEEecCCC------CcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCC
Q 018235 237 WNPITTGRLVTGDCNSCIYLWEPASD------ATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK 310 (359)
Q Consensus 237 ~sp~~~~~l~sgs~dg~I~lwd~~~~------~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~ 310 (359)
..+.+. .++||+.||+|+.|++... ..+.+-...+.||+..|+.+.+|+... .|++|+.||++|+|.....
T Consensus 352 v~~n~~-~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~-~Llscs~DgTvr~w~~~~~- 428 (577)
T KOG0642|consen 352 VPSNGE-HCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD-RLLSCSSDGTVRLWEPTEE- 428 (577)
T ss_pred ecCCce-EEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc-ceeeecCCceEEeeccCCc-
Confidence 999998 9999999999999965421 122233467889999999999999988 8999999999999987654
Q ss_pred CceEEe---e---------------c----------------------------------CCCCEEEEEEcCCCCeEEEE
Q 018235 311 SALTSF---K---------------A----------------------------------HNADVNVISWNRCWLAVCWH 338 (359)
Q Consensus 311 ~~~~~~---~---------------~----------------------------------h~~~V~~i~~s~~~~~l~~~ 338 (359)
.+ +++ . + ....++-+.++|.+.+.+..
T Consensus 429 ~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~ 507 (577)
T KOG0642|consen 429 SP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTA 507 (577)
T ss_pred Cc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEec
Confidence 11 000 0 0 01235667777777766666
Q ss_pred eeecccceEEEEEeCcCCcc
Q 018235 339 LEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 339 ~~~~~~d~~i~iwd~~~g~v 358 (359)
.. ++.|+++|..+|.+
T Consensus 508 he----d~~Ir~~dn~~~~~ 523 (577)
T KOG0642|consen 508 HE----DRSIRFFDNKTGKI 523 (577)
T ss_pred cc----CCceeccccccccc
Confidence 55 88899998887764
No 160
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.58 E-value=6.4e-13 Score=121.87 Aligned_cols=183 Identities=18% Similarity=0.238 Sum_probs=134.0
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCcccccccccccc---------CC--------CCCC
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVG---------QG--------APQV 216 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~---------~~--------~~~~ 216 (359)
...+..+...|.|.|.++....+| .+.||+.|..|..||-.- +.......... .. .+..
T Consensus 276 ~~~~~k~~~aH~ggv~~L~~lr~G--tllSGgKDRki~~Wd~~y--~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~i 351 (626)
T KOG2106|consen 276 TNRISKQVHAHDGGVFSLCMLRDG--TLLSGGKDRKIILWDDNY--RKLRETELPEQFGPIRTVAEGKGDILVGTTRNFI 351 (626)
T ss_pred CceEEeEeeecCCceEEEEEecCc--cEeecCccceEEeccccc--cccccccCchhcCCeeEEecCCCcEEEeeccceE
Confidence 344445555999999999999998 455599999999999322 11111111000 00 0000
Q ss_pred ----CCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEE
Q 018235 217 ----SNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVF 292 (359)
Q Consensus 217 ----~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~l 292 (359)
-......+..+|..+.+.++-+|..+ +|+|++.|+.++||+ ...-.|. + --..++.++.|+|.+ ++
T Consensus 352 L~Gt~~~~f~~~v~gh~delwgla~hps~~-q~~T~gqdk~v~lW~-~~k~~wt---~---~~~d~~~~~~fhpsg--~v 421 (626)
T KOG2106|consen 352 LQGTLENGFTLTVQGHGDELWGLATHPSKN-QLLTCGQDKHVRLWN-DHKLEWT---K---IIEDPAECADFHPSG--VV 421 (626)
T ss_pred EEeeecCCceEEEEecccceeeEEcCCChh-heeeccCcceEEEcc-CCceeEE---E---EecCceeEeeccCcc--eE
Confidence 12233345678999999999999998 999999999999999 2212222 1 134688999999999 89
Q ss_pred EEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 293 ASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 293 as~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
|.|...|...+.|+.+ +.+.++...+.++++++|+|+|.+++.+.. |+.|.|+.++.+
T Consensus 422 a~Gt~~G~w~V~d~e~--~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~----d~~iyiy~Vs~~ 479 (626)
T KOG2106|consen 422 AVGTATGRWFVLDTET--QDLVTIHTDNEQLSVVRYSPDGAFLAVGSH----DNHIYIYRVSAN 479 (626)
T ss_pred EEeeccceEEEEeccc--ceeEEEEecCCceEEEEEcCCCCEEEEecC----CCeEEEEEECCC
Confidence 9999999999999998 455566555999999999999999999877 889999876653
No 161
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=7.9e-13 Score=125.07 Aligned_cols=172 Identities=19% Similarity=0.226 Sum_probs=132.3
Q ss_pred CCeEEEEEecCC-CceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCce
Q 018235 154 TPILQLRKVAHQ-GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEG 232 (359)
Q Consensus 154 ~~~~~~~~~~H~-~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 232 (359)
...++..+.++. +.|..++|++.+ .+.+.+.+|.|.-||+.. .++...+......|
T Consensus 57 ~w~~~~vi~g~~drsIE~L~W~e~~--RLFS~g~sg~i~EwDl~~---------------------lk~~~~~d~~gg~I 113 (691)
T KOG2048|consen 57 NWFLEPVIHGPEDRSIESLAWAEGG--RLFSSGLSGSITEWDLHT---------------------LKQKYNIDSNGGAI 113 (691)
T ss_pred CceeeEEEecCCCCceeeEEEccCC--eEEeecCCceEEEEeccc---------------------CceeEEecCCCcce
Confidence 344444444554 789999999655 677788999999999998 68888888888899
Q ss_pred EEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCc
Q 018235 233 YAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSA 312 (359)
Q Consensus 233 ~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~ 312 (359)
++++.+|.+. .++.|+.||.+..++... +... -.+.|...++.|.+|+|+|++. .+++|+.||.|++||...+ ..
T Consensus 114 Wsiai~p~~~-~l~IgcddGvl~~~s~~p-~~I~-~~r~l~rq~sRvLslsw~~~~~-~i~~Gs~Dg~Iriwd~~~~-~t 188 (691)
T KOG2048|consen 114 WSIAINPENT-ILAIGCDDGVLYDFSIGP-DKIT-YKRSLMRQKSRVLSLSWNPTGT-KIAGGSIDGVIRIWDVKSG-QT 188 (691)
T ss_pred eEEEeCCccc-eEEeecCCceEEEEecCC-ceEE-EEeecccccceEEEEEecCCcc-EEEecccCceEEEEEcCCC-ce
Confidence 9999999998 999999999777777654 3322 2245666789999999999998 8999999999999999988 43
Q ss_pred eEEe-------e-cCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 313 LTSF-------K-AHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 313 ~~~~-------~-~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
+..+ . ....-|+++.|=.++.++..+. -+.+++||...|+.
T Consensus 189 ~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS-----~G~V~FWd~~~gTL 237 (691)
T KOG2048|consen 189 LHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDS-----AGTVTFWDSIFGTL 237 (691)
T ss_pred EEEeeecccccccCCceEEEEEEEeecCcEEEecC-----CceEEEEcccCcch
Confidence 3311 1 1344578888887776655553 57899999988763
No 162
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.57 E-value=3e-14 Score=131.36 Aligned_cols=164 Identities=16% Similarity=0.216 Sum_probs=125.4
Q ss_pred eEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEE
Q 018235 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAI 235 (359)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 235 (359)
..+....+|.+.|.+-||+|+| .-+.|.++||.|+||.-...+ ..++.....+|+|+
T Consensus 95 rVE~sv~AH~~A~~~gRW~~dG-tgLlt~GEDG~iKiWSrsGML----------------------RStl~Q~~~~v~c~ 151 (737)
T KOG1524|consen 95 RVERSISAHAAAISSGRWSPDG-AGLLTAGEDGVIKIWSRSGML----------------------RSTVVQNEESIRCA 151 (737)
T ss_pred hhhhhhhhhhhhhhhcccCCCC-ceeeeecCCceEEEEeccchH----------------------HHHHhhcCceeEEE
Confidence 3445556899999999999999 778899999999999876532 22344445689999
Q ss_pred EeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEE
Q 018235 236 DWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS 315 (359)
Q Consensus 236 ~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~ 315 (359)
+|.|+.+..+.+.+ +.+.|=-+....+. ....+|.+-|.++.|+|... ++++|+.|-..+|||... ..+..
T Consensus 152 ~W~p~S~~vl~c~g--~h~~IKpL~~n~k~----i~WkAHDGiiL~~~W~~~s~-lI~sgGED~kfKvWD~~G--~~Lf~ 222 (737)
T KOG1524|consen 152 RWAPNSNSIVFCQG--GHISIKPLAANSKI----IRWRAHDGLVLSLSWSTQSN-IIASGGEDFRFKIWDAQG--ANLFT 222 (737)
T ss_pred EECCCCCceEEecC--CeEEEeecccccce----eEEeccCcEEEEeecCcccc-ceeecCCceeEEeecccC--ccccc
Confidence 99999985555544 34444344332222 35678999999999999998 999999999999999875 57777
Q ss_pred eecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 316 FKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 316 ~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
-.+|.-+|++++|+|+..+++|+..+ +++=.++.|.
T Consensus 223 S~~~ey~ITSva~npd~~~~v~S~nt------~R~~~p~~GS 258 (737)
T KOG1524|consen 223 SAAEEYAITSVAFNPEKDYLLWSYNT------ARFSSPRVGS 258 (737)
T ss_pred CChhccceeeeeeccccceeeeeeee------eeecCCCccc
Confidence 78899999999999997777777543 5554555554
No 163
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.57 E-value=1.2e-13 Score=126.39 Aligned_cols=140 Identities=19% Similarity=0.304 Sum_probs=119.8
Q ss_pred CceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEE-ecCCCCceEEEEeCCCCCCe
Q 018235 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVK-FGGHKDEGYAIDWNPITTGR 244 (359)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~sp~~~~~ 244 (359)
..|.-++|+|....++.+++++|.|.+||+.. ..|++. ...|..+..+++|+|..+-+
T Consensus 165 qsvRll~ys~skr~lL~~asd~G~VtlwDv~g---------------------~sp~~~~~~~HsAP~~gicfspsne~l 223 (673)
T KOG4378|consen 165 QSVRLLRYSPSKRFLLSIASDKGAVTLWDVQG---------------------MSPIFHASEAHSAPCRGICFSPSNEAL 223 (673)
T ss_pred CeEEEeecccccceeeEeeccCCeEEEEeccC---------------------CCcccchhhhccCCcCcceecCCccce
Confidence 45568899999889999999999999999998 455544 45799999999999999989
Q ss_pred EEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEE
Q 018235 245 LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVN 324 (359)
Q Consensus 245 l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~ 324 (359)
|++.+.|..|.+||++.. ... ..+ ....+...|+|+++|. +|+.|...|.|..||+|..+.|+..+.+|...|+
T Consensus 224 ~vsVG~Dkki~~yD~~s~-~s~---~~l-~y~~Plstvaf~~~G~-~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt 297 (673)
T KOG4378|consen 224 LVSVGYDKKINIYDIRSQ-AST---DRL-TYSHPLSTVAFSECGT-YLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVT 297 (673)
T ss_pred EEEecccceEEEeecccc-ccc---cee-eecCCcceeeecCCce-EEEeecCCceEEEEecccCCCCceEeeeccccee
Confidence 999999999999999862 211 122 2456788899999999 9999999999999999998889999999999999
Q ss_pred EEEEcCCC
Q 018235 325 VISWNRCW 332 (359)
Q Consensus 325 ~i~~s~~~ 332 (359)
+|+|-|..
T Consensus 298 ~vafq~s~ 305 (673)
T KOG4378|consen 298 RVAFQPSP 305 (673)
T ss_pred EEEeeecc
Confidence 99998865
No 164
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.57 E-value=2.2e-14 Score=134.64 Aligned_cols=161 Identities=22% Similarity=0.350 Sum_probs=120.6
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEE
Q 018235 176 QNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIY 255 (359)
Q Consensus 176 ~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~ 255 (359)
...++||.+.++|.|.++|.....-.+ ....+..+..|...|+.+.|-| +..+|++++.|.+|+
T Consensus 62 n~eHiLavadE~G~i~l~dt~~~~fr~---------------ee~~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r 125 (720)
T KOG0321|consen 62 NKEHILAVADEDGGIILFDTKSIVFRL---------------EERQLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIR 125 (720)
T ss_pred CccceEEEecCCCceeeecchhhhcch---------------hhhhhcccccccceeEeeccCC-CceeEEEccCCceee
Confidence 345899999999999999987732111 1223456778999999999999 555999999999999
Q ss_pred EEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCC-------------------c----
Q 018235 256 LWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS-------------------A---- 312 (359)
Q Consensus 256 lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~-------------------~---- 312 (359)
+||+.+ +... -...+.||+.+|.+++|+|.++.+|++|+.||.|.|||+|.... +
T Consensus 126 ~Wdvk~-s~l~-G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~ 203 (720)
T KOG0321|consen 126 PWDVKT-SRLV-GGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPL 203 (720)
T ss_pred eeeecc-ceee-cceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchh
Confidence 999987 4433 12358899999999999999999999999999999999986520 0
Q ss_pred ---eEEeecCCCCEEE---EEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 313 ---LTSFKAHNADVNV---ISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 313 ---~~~~~~h~~~V~~---i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
+....+|...|.+ +.+..|...|+...+ .|..|++||+++..
T Consensus 204 ~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga---~D~~iKVWDLRk~~ 251 (720)
T KOG0321|consen 204 KKRIRKWKAASNTIFSSVTVVLFKDESTLASAGA---ADSTIKVWDLRKNY 251 (720)
T ss_pred hccccccccccCceeeeeEEEEEeccceeeeccC---CCcceEEEeecccc
Confidence 0111234444544 445556666666554 38999999998753
No 165
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.57 E-value=1.5e-12 Score=118.28 Aligned_cols=162 Identities=8% Similarity=0.017 Sum_probs=110.9
Q ss_pred CCCceeeEEEeCCCCcEEEEEeCCC-cEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCC
Q 018235 164 HQGCVNRIRAMTQNPHICASWADTG-HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (359)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg-~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~ 242 (359)
+...+..++|+|++ .++++++.++ .+.+||... ......+.. .....+++|+|++.
T Consensus 113 ~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~d~~~---------------------~~~~~~~~~-~~~~~~~~~s~dg~ 169 (300)
T TIGR03866 113 VGVEPEGMAVSPDG-KIVVNTSETTNMAHFIDTKT---------------------YEIVDNVLV-DQRPRFAEFTADGK 169 (300)
T ss_pred CCCCcceEEECCCC-CEEEEEecCCCeEEEEeCCC---------------------CeEEEEEEc-CCCccEEEECCCCC
Confidence 34456889999999 6676666654 567788765 222222211 22346799999998
Q ss_pred CeE-EEEcCCCcEEEEecCCCCcceecCccccC-----CC--CCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceE
Q 018235 243 GRL-VTGDCNSCIYLWEPASDATWNVDPNPFIG-----HS--ASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALT 314 (359)
Q Consensus 243 ~~l-~sgs~dg~I~lwd~~~~~~~~~~~~~~~~-----h~--~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~ 314 (359)
+| +++..++.|++||+.+ ++.. ..+.. +. .....++|+|++..++++.+.++.|.+||++++ +.+.
T Consensus 170 -~l~~~~~~~~~v~i~d~~~-~~~~---~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~-~~~~ 243 (300)
T TIGR03866 170 -ELWVSSEIGGTVSVIDVAT-RKVI---KKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY-EVLD 243 (300)
T ss_pred -EEEEEcCCCCEEEEEEcCc-ceee---eeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC-cEEE
Confidence 55 5666799999999987 3322 11111 11 123468899999955666677788999999876 4443
Q ss_pred EeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 315 SFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 315 ~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
.+ .+...+.+++|+|++..|+.+.. .++.|.+||..++++
T Consensus 244 ~~-~~~~~~~~~~~~~~g~~l~~~~~---~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 244 YL-LVGQRVWQLAFTPDEKYLLTTNG---VSNDVSVIDVAALKV 283 (300)
T ss_pred EE-EeCCCcceEEECCCCCEEEEEcC---CCCeEEEEECCCCcE
Confidence 33 34557999999999999876643 267899999998874
No 166
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=5.9e-14 Score=123.04 Aligned_cols=150 Identities=17% Similarity=0.279 Sum_probs=117.9
Q ss_pred cEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCC-CCCeEEEEcCCCcEEEE
Q 018235 179 HICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI-TTGRLVTGDCNSCIYLW 257 (359)
Q Consensus 179 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~-~~~~l~sgs~dg~I~lw 257 (359)
..+|++..+|.|++||..+ ++.+..|++|...+..+.|... +...+.||+.||+|++|
T Consensus 41 ~~vav~lSngsv~lyd~~t---------------------g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~w 99 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGT---------------------GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLW 99 (376)
T ss_pred eeEEEEecCCeEEEEeccc---------------------hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEE
Confidence 5788888999999999987 6778889999998889988764 55589999999999999
Q ss_pred ecCCCCcceecCccccCCC-CCeEEEEecCCCCCEEEEEe----CCCcEEEEECCCCCCceEEe-ecCCCCEEEEEEcCC
Q 018235 258 EPASDATWNVDPNPFIGHS-ASVEDLQWSPTEPDVFASCS----VDGHIAIWDTRVGKSALTSF-KAHNADVNVISWNRC 331 (359)
Q Consensus 258 d~~~~~~~~~~~~~~~~h~-~~V~~v~~sp~~~~~las~s----~Dg~I~iwD~r~~~~~~~~~-~~h~~~V~~i~~s~~ 331 (359)
|+|...+.. ...+.+|. .+..+++-.-.+. ++++|. .+-.|.+||.|..++++..+ ..|..+|++|.|+|.
T Consensus 100 D~Rs~~e~a--~~~~~~~~~~~f~~ld~nck~~-ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~ 176 (376)
T KOG1188|consen 100 DIRSQAESA--RISWTQQSGTPFICLDLNCKKN-IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPS 176 (376)
T ss_pred Eeecchhhh--heeccCCCCCcceEeeccCcCC-eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCC
Confidence 999865543 24455555 3555666554555 888875 57889999999985556555 789999999999998
Q ss_pred CCeEEEEeeecccceEEEEEeCcC
Q 018235 332 WLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 332 ~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
..-++.+... |+++.++|+..
T Consensus 177 ~pnlLlSGSv---DGLvnlfD~~~ 197 (376)
T KOG1188|consen 177 DPNLLLSGSV---DGLVNLFDTKK 197 (376)
T ss_pred CCCeEEeecc---cceEEeeecCC
Confidence 8766555443 99999999864
No 167
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.56 E-value=1.4e-13 Score=120.07 Aligned_cols=169 Identities=15% Similarity=0.269 Sum_probs=133.6
Q ss_pred EEecCCCceeeEEEeCC----CCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEec--CCCCceE
Q 018235 160 RKVAHQGCVNRIRAMTQ----NPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG--GHKDEGY 233 (359)
Q Consensus 160 ~~~~H~~~V~~i~~~p~----~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~ 233 (359)
-...|+.+|..++|++. .+.++||.+. ..|.||....... ...+.++. .|....+
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~------------------ir~lq~y~D~d~~Esfy 93 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGG------------------IRLLQSYADEDHDESFY 93 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccc------------------eeeeeeccCCCCCcceE
Confidence 34568899999999853 3578888664 5788998876320 12222222 3556788
Q ss_pred EEEeCCCCC---CeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCC
Q 018235 234 AIDWNPITT---GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK 310 (359)
Q Consensus 234 ~l~~sp~~~---~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~ 310 (359)
.++|+-+.. -+||.|+.-|.|+|.|+.+ ++.. ..+.+|...|+.|.++|..++++++||.|.+||||++++.
T Consensus 94 tcsw~yd~~~~~p~la~~G~~GvIrVid~~~-~~~~---~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~- 168 (385)
T KOG1034|consen 94 TCSWSYDSNTGNPFLAAGGYLGVIRVIDVVS-GQCS---KNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTD- 168 (385)
T ss_pred EEEEEecCCCCCeeEEeecceeEEEEEecch-hhhc---cceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCC-
Confidence 899975432 2899999999999999977 5544 6788999999999999999999999999999999999998
Q ss_pred CceEEe---ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 311 SALTSF---KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 311 ~~~~~~---~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
.++..+ .+|...|.++.|++++.+++...- |..|++|+....
T Consensus 169 ~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGm----Dhslk~W~l~~~ 213 (385)
T KOG1034|consen 169 VCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGM----DHSLKLWRLNVK 213 (385)
T ss_pred eEEEEecccccccCcEEEEEEcCCCCeeeccCC----cceEEEEecChh
Confidence 777766 689999999999999998876654 999999998743
No 168
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=2.9e-13 Score=117.23 Aligned_cols=173 Identities=15% Similarity=0.257 Sum_probs=127.2
Q ss_pred cCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCC--
Q 018235 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI-- 240 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~-- 240 (359)
+|..-|+++.|.+.| ..+|||+.|++|.|||++.... ........+.|.+.|..+.|.+-
T Consensus 11 ~h~DlihdVs~D~~G-RRmAtCSsDq~vkI~d~~~~s~-----------------~W~~Ts~Wrah~~Si~rV~WAhPEf 72 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYG-RRMATCSSDQTVKIWDSTSDSG-----------------TWSCTSSWRAHDGSIWRVVWAHPEF 72 (361)
T ss_pred CCcceeeeeeecccC-ceeeeccCCCcEEEEeccCCCC-----------------ceEEeeeEEecCCcEEEEEecCccc
Confidence 789999999999999 8999999999999999866322 23556678899999999999653
Q ss_pred CCCeEEEEcCCCcEEEEecCC------CCcceecCccccCCCCCeEEEEecCCCCC-EEEEEeCCCcEEEEECCCCCC--
Q 018235 241 TTGRLVTGDCNSCIYLWEPAS------DATWNVDPNPFIGHSASVEDLQWSPTEPD-VFASCSVDGHIAIWDTRVGKS-- 311 (359)
Q Consensus 241 ~~~~l~sgs~dg~I~lwd~~~------~~~~~~~~~~~~~h~~~V~~v~~sp~~~~-~las~s~Dg~I~iwD~r~~~~-- 311 (359)
|. .+|+|+.|+++.||.-.. +..|+. ..++....+.|++|+|.|.... .+|+++.||.||||+.-....
T Consensus 73 Gq-vvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~-~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs 150 (361)
T KOG2445|consen 73 GQ-VVATCSYDRTVSIWEEQEKSEEAHGRRWVR-RTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLS 150 (361)
T ss_pred cc-eEEEEecCCceeeeeecccccccccceeEE-EEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccc
Confidence 44 899999999999996521 123442 3456677899999999997543 689999999999998765411
Q ss_pred ---ceEEe-------ecCCCCEEEEEEcCC---CCeEEEEeeecc-cceEEEEEeCcC
Q 018235 312 ---ALTSF-------KAHNADVNVISWNRC---WLAVCWHLEVMM-EHFLFMILDCSR 355 (359)
Q Consensus 312 ---~~~~~-------~~h~~~V~~i~~s~~---~~~l~~~~~~~~-~d~~i~iwd~~~ 355 (359)
....+ ..+..+..|++|||. .++|+.+..... .-+.+.||....
T Consensus 151 ~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e 208 (361)
T KOG2445|consen 151 QWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNE 208 (361)
T ss_pred cchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecC
Confidence 11112 246778899999974 356666654311 124577776543
No 169
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.55 E-value=1.5e-13 Score=130.51 Aligned_cols=189 Identities=15% Similarity=0.122 Sum_probs=140.2
Q ss_pred EEEecCCCceeeEEEeCCC--CcEEEEEeCCCcEEEEECCCCc---ccccccccc---c------------cCCCCCC--
Q 018235 159 LRKVAHQGCVNRIRAMTQN--PHICASWADTGHVQVWDLRSHL---NALAESETI---V------------GQGAPQV-- 216 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~--~~~lat~s~dg~V~iwd~~~~~---~~~~~~~~~---~------------~~~~~~~-- 216 (359)
....+|..+|.|+.|+... ..++|+++.|..|+|||....- ..+..+... + ..+.++.
T Consensus 495 ~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksim 574 (1080)
T KOG1408|consen 495 CFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIM 574 (1080)
T ss_pred hheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhh
Confidence 3455899999999998643 4799999999999999987632 112111110 0 0111111
Q ss_pred ----CCCCCcEEecCC-----CCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCC
Q 018235 217 ----SNQSPLVKFGGH-----KDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPT 287 (359)
Q Consensus 217 ----~~~~~~~~~~~h-----~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~ 287 (359)
.+......|..| ...+|.|+..|... +++++..|..|+||++.+ ++.....+.-.+|.+..-.|...|.
T Consensus 575 Fr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k-~v~t~cQDrnirif~i~s-gKq~k~FKgs~~~eG~lIKv~lDPS 652 (1080)
T KOG1408|consen 575 FRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSK-LVVTVCQDRNIRIFDIES-GKQVKSFKGSRDHEGDLIKVILDPS 652 (1080)
T ss_pred eehhccccCceeccccccccccceEEEeeeCCCcc-eEEEEecccceEEEeccc-cceeeeecccccCCCceEEEEECCC
Confidence 011112223222 23689999999998 999999999999999987 5544212223347788888999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 288 EPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 288 ~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
+. ++|+.+.|+++.++|+-++ .++....+|...|+.+.|.++-+-|+.... |++|-+|....
T Consensus 653 gi-Y~atScsdktl~~~Df~sg-EcvA~m~GHsE~VTG~kF~nDCkHlISvsg----DgCIFvW~lp~ 714 (1080)
T KOG1408|consen 653 GI-YLATSCSDKTLCFVDFVSG-ECVAQMTGHSEAVTGVKFLNDCKHLISVSG----DGCIFVWKLPL 714 (1080)
T ss_pred cc-EEEEeecCCceEEEEeccc-hhhhhhcCcchheeeeeecccchhheeecC----CceEEEEECch
Confidence 99 9999999999999999998 899999999999999999999998887766 99999998754
No 170
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=2e-13 Score=123.93 Aligned_cols=166 Identities=15% Similarity=0.175 Sum_probs=125.8
Q ss_pred EEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCC-ceEEEEeC
Q 018235 160 RKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKD-EGYAIDWN 238 (359)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~s 238 (359)
..+.-.|.|..+.|+.++ ..|..++.+|.|.+||++. ..+++.|....+ .++.++.|
T Consensus 339 ~s~KieG~v~~~~fsSds-k~l~~~~~~GeV~v~nl~~---------------------~~~~~rf~D~G~v~gts~~~S 396 (514)
T KOG2055|consen 339 TSFKIEGVVSDFTFSSDS-KELLASGGTGEVYVWNLRQ---------------------NSCLHRFVDDGSVHGTSLCIS 396 (514)
T ss_pred heeeeccEEeeEEEecCC-cEEEEEcCCceEEEEecCC---------------------cceEEEEeecCccceeeeeec
Confidence 344568999999999998 5555557789999999998 466666655443 56788889
Q ss_pred CCCCCeEEEEcCCCcEEEEecCCC--CcceecCccccCCCCCeEEEEecCCCCCEEEEEe--CCCcEEEEECCCCCCceE
Q 018235 239 PITTGRLVTGDCNSCIYLWEPASD--ATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS--VDGHIAIWDTRVGKSALT 314 (359)
Q Consensus 239 p~~~~~l~sgs~dg~I~lwd~~~~--~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s--~Dg~I~iwD~r~~~~~~~ 314 (359)
+++. +||+|+..|.|.|||.++. +.-..++..+..-+..|++++|+|+.+ +||-|| .+..+|+-.+.+. ....
T Consensus 397 ~ng~-ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~q-iLAiaS~~~knalrLVHvPS~-TVFs 473 (514)
T KOG2055|consen 397 LNGS-YLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQ-ILAIASRVKKNALRLVHVPSC-TVFS 473 (514)
T ss_pred CCCc-eEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchh-hhhhhhhccccceEEEeccce-eeec
Confidence 9998 9999999999999997542 111122345556678999999999999 888887 4677999888764 3333
Q ss_pred Eeec---CCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 315 SFKA---HNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 315 ~~~~---h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
.+.. .-+.|+|++|+|.+.+++.+.. .+.+.+|..+
T Consensus 474 NfP~~n~~vg~vtc~aFSP~sG~lAvGNe----~grv~l~kL~ 512 (514)
T KOG2055|consen 474 NFPTSNTKVGHVTCMAFSPNSGYLAVGNE----AGRVHLFKLH 512 (514)
T ss_pred cCCCCCCcccceEEEEecCCCceEEeecC----CCceeeEeec
Confidence 3322 2346899999999999999976 7788999764
No 171
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=3.2e-13 Score=117.36 Aligned_cols=223 Identities=9% Similarity=0.081 Sum_probs=145.4
Q ss_pred ceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 018235 69 CLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDE 148 (359)
Q Consensus 69 ~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~~ 148 (359)
.+++++-|-+ .+|++|. .++.|.||++..
T Consensus 26 a~~~~Fs~~G-----------~~lAvGc-----~nG~vvI~D~~T----------------------------------- 54 (405)
T KOG1273|consen 26 AECCQFSRWG-----------DYLAVGC-----ANGRVVIYDFDT----------------------------------- 54 (405)
T ss_pred cceEEeccCc-----------ceeeeec-----cCCcEEEEEccc-----------------------------------
Confidence 4577777654 5888888 567899999841
Q ss_pred CCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCc--ccccccccc-----ccCCCCCC-----
Q 018235 149 EGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHL--NALAESETI-----VGQGAPQV----- 216 (359)
Q Consensus 149 ~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~--~~~~~~~~~-----~~~~~~~~----- 216 (359)
-.....+.+|..+|.+++|+++| +.+.|+|.|..|.+||+.... ..+...... .+...++.
T Consensus 55 ------~~iar~lsaH~~pi~sl~WS~dg-r~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~ 127 (405)
T KOG1273|consen 55 ------FRIARMLSAHVRPITSLCWSRDG-RKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIM 127 (405)
T ss_pred ------cchhhhhhccccceeEEEecCCC-CEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEe
Confidence 11223455899999999999999 899999999999999998732 111111100 00000000
Q ss_pred CCC-------CCcEEecCCCC------ceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCC-CCCeEEE
Q 018235 217 SNQ-------SPLVKFGGHKD------EGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGH-SASVEDL 282 (359)
Q Consensus 217 ~~~-------~~~~~~~~h~~------~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h-~~~V~~v 282 (359)
... .+.+++-.... .-....|.+.|. ++++|...|.+.+++..+. .++ ..+.-. ...|..+
T Consensus 128 ~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~-yIitGtsKGkllv~~a~t~-e~v---as~rits~~~IK~I 202 (405)
T KOG1273|consen 128 EESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGK-YIITGTSKGKLLVYDAETL-ECV---ASFRITSVQAIKQI 202 (405)
T ss_pred cCCcEEEEecCCceeeccCCCccccccccccccccCCCC-EEEEecCcceEEEEecchh-eee---eeeeechheeeeEE
Confidence 000 01111111000 011224677787 9999999999999998773 333 333333 3788899
Q ss_pred EecCCCCCEEEEEeCCCcEEEEECCCCC--------CceEEee--cCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEe
Q 018235 283 QWSPTEPDVFASCSVDGHIAIWDTRVGK--------SALTSFK--AHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILD 352 (359)
Q Consensus 283 ~~sp~~~~~las~s~Dg~I~iwD~r~~~--------~~~~~~~--~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd 352 (359)
-++..+. .|+.-+.|+.||.|+++.-. .+.+.+. ......++++|+.+|.+++.+... .+.+.||.
T Consensus 203 ~~s~~g~-~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~---aHaLYIWE 278 (405)
T KOG1273|consen 203 IVSRKGR-FLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSAR---AHALYIWE 278 (405)
T ss_pred EEeccCc-EEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEecccc---ceeEEEEe
Confidence 9999999 99999999999999987320 1112221 123456788999999999988754 67788998
Q ss_pred CcCCcc
Q 018235 353 CSRGEI 358 (359)
Q Consensus 353 ~~~g~v 358 (359)
.+.|.+
T Consensus 279 ~~~GsL 284 (405)
T KOG1273|consen 279 KSIGSL 284 (405)
T ss_pred cCCcce
Confidence 888764
No 172
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.54 E-value=6.8e-13 Score=113.16 Aligned_cols=154 Identities=14% Similarity=0.277 Sum_probs=106.5
Q ss_pred eEEEeCCCCcEEEEEe---------CCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecC-CCCceEEEEeCC
Q 018235 170 RIRAMTQNPHICASWA---------DTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGG-HKDEGYAIDWNP 239 (359)
Q Consensus 170 ~i~~~p~~~~~lat~s---------~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~sp 239 (359)
.+.|+|+|..+++... .-|...||.++. ...++..+.- ...+|.+++|+|
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~--------------------~~~~~~~i~l~~~~~I~~~~WsP 69 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNE--------------------KNIPVESIELKKEGPIHDVAWSP 69 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEec--------------------CCCccceeeccCCCceEEEEECc
Confidence 4678888865555544 124556666654 2344444433 334799999999
Q ss_pred CCCCeEEE--EcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeC---CCcEEEEECCCCCCceE
Q 018235 240 ITTGRLVT--GDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSV---DGHIAIWDTRVGKSALT 314 (359)
Q Consensus 240 ~~~~~l~s--gs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~---Dg~I~iwD~r~~~~~~~ 314 (359)
++. .||. |..++.|.+||++ ...+ ..+ +...++.|.|+|.|. +|++++. .|.|.+||++.. +.+.
T Consensus 70 ~g~-~favi~g~~~~~v~lyd~~--~~~i---~~~--~~~~~n~i~wsP~G~-~l~~~g~~n~~G~l~~wd~~~~-~~i~ 139 (194)
T PF08662_consen 70 NGN-EFAVIYGSMPAKVTLYDVK--GKKI---FSF--GTQPRNTISWSPDGR-FLVLAGFGNLNGDLEFWDVRKK-KKIS 139 (194)
T ss_pred CCC-EEEEEEccCCcccEEEcCc--ccEe---Eee--cCCCceEEEECCCCC-EEEEEEccCCCcEEEEEECCCC-EEee
Confidence 998 6543 5567899999996 2322 223 457788999999999 7777653 467999999976 5554
Q ss_pred EeecCCCCEEEEEEcCCCCeEEEEeee--cccceEEEEEeCcC
Q 018235 315 SFKAHNADVNVISWNRCWLAVCWHLEV--MMEHFLFMILDCSR 355 (359)
Q Consensus 315 ~~~~h~~~V~~i~~s~~~~~l~~~~~~--~~~d~~i~iwd~~~ 355 (359)
... |. .++.++|+|+|+++++.... .+.++.++||+...
T Consensus 140 ~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 140 TFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred ccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence 443 33 47899999999999887543 34478899998753
No 173
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.53 E-value=2.4e-13 Score=118.30 Aligned_cols=164 Identities=16% Similarity=0.219 Sum_probs=136.1
Q ss_pred CCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCC
Q 018235 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (359)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~ 243 (359)
...+|+|-+|++++ ..+|.+..+..|.||...... ..++.+++..|...+++++|+|..+
T Consensus 9 ~~~pitchAwn~dr-t~iAv~~~~~evhiy~~~~~~------------------~w~~~htls~Hd~~vtgvdWap~sn- 68 (361)
T KOG1523|consen 9 LLEPITCHAWNSDR-TQIAVSPNNHEVHIYSMLGAD------------------LWEPAHTLSEHDKIVTGVDWAPKSN- 68 (361)
T ss_pred ccCceeeeeecCCC-ceEEeccCCceEEEEEecCCC------------------CceeceehhhhCcceeEEeecCCCC-
Confidence 46799999999999 789999999999999987621 2578899999999999999999998
Q ss_pred eEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCC---ceEEeecCC
Q 018235 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS---ALTSFKAHN 320 (359)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~---~~~~~~~h~ 320 (359)
+|++|+.|..-++|....++.|.. .-.+..+...+++|.|+|.+. .||+||.-+.|.||-+..... ..+.-+.+.
T Consensus 69 rIvtcs~drnayVw~~~~~~~Wkp-tlvLlRiNrAAt~V~WsP~en-kFAVgSgar~isVcy~E~ENdWWVsKhikkPir 146 (361)
T KOG1523|consen 69 RIVTCSHDRNAYVWTQPSGGTWKP-TLVLLRINRAATCVKWSPKEN-KFAVGSGARLISVCYYEQENDWWVSKHIKKPIR 146 (361)
T ss_pred ceeEccCCCCccccccCCCCeecc-ceeEEEeccceeeEeecCcCc-eEEeccCccEEEEEEEecccceehhhhhCCccc
Confidence 999999999999999977677752 233556889999999999998 999999999999998887522 111225678
Q ss_pred CCEEEEEEcCCCCeEEEEeeecccceEEEEEeC
Q 018235 321 ADVNVISWNRCWLAVCWHLEVMMEHFLFMILDC 353 (359)
Q Consensus 321 ~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~ 353 (359)
+.|++++|+|++-+++.+.. |+..+++..
T Consensus 147 Stv~sldWhpnnVLlaaGs~----D~k~rVfSa 175 (361)
T KOG1523|consen 147 STVTSLDWHPNNVLLAAGST----DGKCRVFSA 175 (361)
T ss_pred cceeeeeccCCcceeccccc----CcceeEEEE
Confidence 88999999999998888876 777777643
No 174
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.53 E-value=2e-12 Score=112.84 Aligned_cols=165 Identities=14% Similarity=0.226 Sum_probs=124.5
Q ss_pred cCCCceeeEEEe-------CCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEec--CCCC---
Q 018235 163 AHQGCVNRIRAM-------TQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG--GHKD--- 230 (359)
Q Consensus 163 ~H~~~V~~i~~~-------p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~--- 230 (359)
.-.+.|..-.|- |.. .++|+.+.+.-|++||..+ ++...++. .|..
T Consensus 102 ~eg~tvydy~wYs~M~s~qP~t-~l~a~ssr~~PIh~wdaft---------------------G~lraSy~~ydh~de~t 159 (406)
T KOG2919|consen 102 QEGETVYDYCWYSRMKSDQPST-NLFAVSSRDQPIHLWDAFT---------------------GKLRASYRAYDHQDEYT 159 (406)
T ss_pred ccCCEEEEEEeeeccccCCCcc-ceeeeccccCceeeeeccc---------------------cccccchhhhhhHHhhh
Confidence 345667766664 333 7899999999999999887 33333333 3444
Q ss_pred ceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCc-ceec---CccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEEC
Q 018235 231 EGYAIDWNPITTGRLVTGDCNSCIYLWEPASDAT-WNVD---PNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDT 306 (359)
Q Consensus 231 ~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~-~~~~---~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~ 306 (359)
..++|+|+|+|+ +|+.|. ..+|+++|+..++. ..+- ...-.+..+.+.+++|||.....+|.++.-.++-|+.-
T Consensus 160 aAhsL~Fs~DGe-qlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~ 237 (406)
T KOG2919|consen 160 AAHSLQFSPDGE-QLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYND 237 (406)
T ss_pred hheeEEecCCCC-eEeecc-cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEec
Confidence 346899999999 887775 78999999944333 1110 01122347889999999998879999999999888877
Q ss_pred CCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 307 RVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 307 r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
... .++..+.+|.+.|+.++|.++|..+..+.+. +..|..||++.
T Consensus 238 ~~~-~pl~llggh~gGvThL~~~edGn~lfsGaRk---~dkIl~WDiR~ 282 (406)
T KOG2919|consen 238 DGR-RPLQLLGGHGGGVTHLQWCEDGNKLFSGARK---DDKILCWDIRY 282 (406)
T ss_pred CCC-CceeeecccCCCeeeEEeccCcCeecccccC---CCeEEEEeehh
Confidence 766 7888889999999999999999988887764 77799999874
No 175
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.52 E-value=6.8e-12 Score=113.87 Aligned_cols=160 Identities=9% Similarity=0.041 Sum_probs=113.5
Q ss_pred CCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCe
Q 018235 165 QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGR 244 (359)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~ 244 (359)
...+..+.|+|++..++++++.++.|++||+.. .+.+..+..+. .+..+.|+|++..+
T Consensus 30 ~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~---------------------~~~~~~~~~~~-~~~~~~~~~~g~~l 87 (300)
T TIGR03866 30 GQRPRGITLSKDGKLLYVCASDSDTIQVIDLAT---------------------GEVIGTLPSGP-DPELFALHPNGKIL 87 (300)
T ss_pred CCCCCceEECCCCCEEEEEECCCCeEEEEECCC---------------------CcEEEeccCCC-CccEEEECCCCCEE
Confidence 344778999999855667888899999999876 33344444443 34678999999734
Q ss_pred EEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCC-cEEEEECCCCCCceEEeecCCCCE
Q 018235 245 LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG-HIAIWDTRVGKSALTSFKAHNADV 323 (359)
Q Consensus 245 l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg-~I~iwD~r~~~~~~~~~~~h~~~V 323 (359)
+++++.++.|++||+++ ...+ ..+. +...+.+++|+|++. ++++++.++ .+.+||.++. ..+..+. ....+
T Consensus 88 ~~~~~~~~~l~~~d~~~-~~~~---~~~~-~~~~~~~~~~~~dg~-~l~~~~~~~~~~~~~d~~~~-~~~~~~~-~~~~~ 159 (300)
T TIGR03866 88 YIANEDDNLVTVIDIET-RKVL---AEIP-VGVEPEGMAVSPDGK-IVVNTSETTNMAHFIDTKTY-EIVDNVL-VDQRP 159 (300)
T ss_pred EEEcCCCCeEEEEECCC-CeEE---eEee-CCCCcceEEECCCCC-EEEEEecCCCeEEEEeCCCC-eEEEEEE-cCCCc
Confidence 45556789999999976 3332 2232 234568899999999 788777765 5778898876 4443332 23456
Q ss_pred EEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 324 NVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 324 ~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
.+++|+|++..++..... ++.+.+|+..+++
T Consensus 160 ~~~~~s~dg~~l~~~~~~---~~~v~i~d~~~~~ 190 (300)
T TIGR03866 160 RFAEFTADGKELWVSSEI---GGTVSVIDVATRK 190 (300)
T ss_pred cEEEECCCCCEEEEEcCC---CCEEEEEEcCcce
Confidence 789999999988765432 6789999998765
No 176
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.52 E-value=7e-13 Score=128.00 Aligned_cols=174 Identities=20% Similarity=0.251 Sum_probs=132.5
Q ss_pred cCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCC
Q 018235 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~ 242 (359)
.-...|.++.|+|..++++|.|+.+|+|.+||++.....+. ...-.....|..+++++.|-.+..
T Consensus 240 ~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~---------------s~ls~~~~sh~~~v~~vvW~~~~~ 304 (555)
T KOG1587|consen 240 ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPP---------------SGLSALEVSHSEPVTAVVWLQNEH 304 (555)
T ss_pred ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCC---------------cccccccccCCcCeEEEEEeccCC
Confidence 34789999999999999999999999999999998432210 111123456888999999965433
Q ss_pred -CeEEEEcCCCcEEEEecCCCCc--------------------------------------------c---------eec
Q 018235 243 -GRLVTGDCNSCIYLWEPASDAT--------------------------------------------W---------NVD 268 (359)
Q Consensus 243 -~~l~sgs~dg~I~lwd~~~~~~--------------------------------------------~---------~~~ 268 (359)
.-|+|++.||.|+.|+++.-.. . ...
T Consensus 305 ~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~ 384 (555)
T KOG1587|consen 305 NTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAP 384 (555)
T ss_pred CCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccc
Confidence 2589999999999998863100 0 000
Q ss_pred ------CccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeec
Q 018235 269 ------PNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVM 342 (359)
Q Consensus 269 ------~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~ 342 (359)
...+..|.++|+.+.++|.+..+|++++ |.+++||.......|+..+..+...|.+++|||....+.+..+.
T Consensus 385 ~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~- 462 (555)
T KOG1587|consen 385 EVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDG- 462 (555)
T ss_pred cccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcC-
Confidence 1234457789999999999987888887 99999999884337888888888889999999999877777664
Q ss_pred ccceEEEEEeCcC
Q 018235 343 MEHFLFMILDCSR 355 (359)
Q Consensus 343 ~~d~~i~iwd~~~ 355 (359)
++.|.+||...
T Consensus 463 --~G~l~iWDLl~ 473 (555)
T KOG1587|consen 463 --DGNLDIWDLLQ 473 (555)
T ss_pred --CCceehhhhhc
Confidence 88899999764
No 177
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.50 E-value=3.8e-13 Score=127.86 Aligned_cols=167 Identities=17% Similarity=0.249 Sum_probs=134.5
Q ss_pred EecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCC
Q 018235 161 KVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI 240 (359)
Q Consensus 161 ~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~ 240 (359)
...-.-.+.+++++|++ ..+|+|..-|+++||++.. ......+..|..+|.+|.+|.-
T Consensus 455 ~~d~r~G~R~~~vSp~g-qhLAsGDr~GnlrVy~Lq~---------------------l~~~~~~eAHesEilcLeyS~p 512 (1080)
T KOG1408|consen 455 TCDSRFGFRALAVSPDG-QHLASGDRGGNLRVYDLQE---------------------LEYTCFMEAHESEILCLEYSFP 512 (1080)
T ss_pred hcCcccceEEEEECCCc-ceecccCccCceEEEEehh---------------------hhhhhheecccceeEEEeecCc
Confidence 34556789999999999 8999999999999999987 4566778899999999999853
Q ss_pred --CCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCC-----------------------------------------
Q 018235 241 --TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSA----------------------------------------- 277 (359)
Q Consensus 241 --~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~----------------------------------------- 277 (359)
+..+||+++.|..|++||....-.+ .+++.+|.+
T Consensus 513 ~~~~kLLASasrdRlIHV~Dv~rny~l---~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r 589 (1080)
T KOG1408|consen 513 VLTNKLLASASRDRLIHVYDVKRNYDL---VQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPR 589 (1080)
T ss_pred hhhhHhhhhccCCceEEEEecccccch---hhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccc
Confidence 2238999999999999998642111 133333433
Q ss_pred --------CeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe---ecCCCCEEEEEEcCCCCeEEEEeeecccce
Q 018235 278 --------SVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF---KAHNADVNVISWNRCWLAVCWHLEVMMEHF 346 (359)
Q Consensus 278 --------~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~---~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~ 346 (359)
.++++...|+.. ++++++.|+.|+|||+.++ +....| ..|.+..-.+...|.|-+++..+. |.
T Consensus 590 ~t~t~~ktTlYDm~Vdp~~k-~v~t~cQDrnirif~i~sg-Kq~k~FKgs~~~eG~lIKv~lDPSgiY~atScs----dk 663 (1080)
T KOG1408|consen 590 HTQTLSKTTLYDMAVDPTSK-LVVTVCQDRNIRIFDIESG-KQVKSFKGSRDHEGDLIKVILDPSGIYLATSCS----DK 663 (1080)
T ss_pred cccccccceEEEeeeCCCcc-eEEEEecccceEEEecccc-ceeeeecccccCCCceEEEEECCCccEEEEeec----CC
Confidence 445566677777 8999999999999999998 666677 457777888899999999999998 99
Q ss_pred EEEEEeCcCCcc
Q 018235 347 LFMILDCSRGEI 358 (359)
Q Consensus 347 ~i~iwd~~~g~v 358 (359)
.|.++|..+|+.
T Consensus 664 tl~~~Df~sgEc 675 (1080)
T KOG1408|consen 664 TLCFVDFVSGEC 675 (1080)
T ss_pred ceEEEEeccchh
Confidence 999999988874
No 178
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=2.6e-13 Score=120.91 Aligned_cols=180 Identities=13% Similarity=0.170 Sum_probs=134.2
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecC-CCCce
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGG-HKDEG 232 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v 232 (359)
.|.....+.+|.|+||+|.|+..+ .++|+|++|-.+++|.+....... ..+|+..... |...|
T Consensus 45 R~~~qKD~~~H~GCiNAlqFS~N~-~~L~SGGDD~~~~~W~~de~~~~k---------------~~KPI~~~~~~H~SNI 108 (609)
T KOG4227|consen 45 RPFCQKDVREHTGCINALQFSHND-RFLASGGDDMHGRVWNVDELMVRK---------------TPKPIGVMEHPHRSNI 108 (609)
T ss_pred cchhhhhhhhhccccceeeeccCC-eEEeecCCcceeeeechHHHHhhc---------------CCCCceeccCccccce
Confidence 556666778999999999999987 899999999999999987622111 2366665543 45799
Q ss_pred EEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCc
Q 018235 233 YAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSA 312 (359)
Q Consensus 233 ~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~ 312 (359)
++|+|+.-+. .|.+|..+++|.+.|+.+.....+ ..-....+.|+.+..+|... +|++.+.+|.|.|||.|..+.+
T Consensus 109 F~L~F~~~N~-~~~SG~~~~~VI~HDiEt~qsi~V--~~~~~~~~~VY~m~~~P~DN-~~~~~t~~~~V~~~D~Rd~~~~ 184 (609)
T KOG4227|consen 109 FSLEFDLENR-FLYSGERWGTVIKHDIETKQSIYV--ANENNNRGDVYHMDQHPTDN-TLIVVTRAKLVSFIDNRDRQNP 184 (609)
T ss_pred EEEEEccCCe-eEecCCCcceeEeeecccceeeee--ecccCcccceeecccCCCCc-eEEEEecCceEEEEeccCCCCC
Confidence 9999998887 999999999999999987433221 11122345899999999966 9999999999999999987434
Q ss_pred eEEe--ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 313 LTSF--KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 313 ~~~~--~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
+..+ .........+.|+|..+.|+..... -+-+.+||.+..
T Consensus 185 ~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~---~~G~~~~D~R~~ 227 (609)
T KOG4227|consen 185 ISLVLPANSGKNFYTAEFHPETPALILVNSE---TGGPNVFDRRMQ 227 (609)
T ss_pred CceeeecCCCccceeeeecCCCceeEEeccc---cCCCCceeeccc
Confidence 3332 3344567888999988876655432 233667887653
No 179
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=2.2e-12 Score=122.18 Aligned_cols=166 Identities=16% Similarity=0.206 Sum_probs=133.1
Q ss_pred EEEec-CCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCC-ceEEEE
Q 018235 159 LRKVA-HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKD-EGYAID 236 (359)
Q Consensus 159 ~~~~~-H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~ 236 (359)
.+++. -+.+|.+++++.+. +.+|.+-.+|.|-||++.. ..-....+.++.+ .|.+|+
T Consensus 18 crf~d~~Ps~I~slA~s~kS-~~lAvsRt~g~IEiwN~~~--------------------~w~~~~vi~g~~drsIE~L~ 76 (691)
T KOG2048|consen 18 CRFVDYKPSEIVSLAYSHKS-NQLAVSRTDGNIEIWNLSN--------------------NWFLEPVIHGPEDRSIESLA 76 (691)
T ss_pred EEEEeeeccceEEEEEeccC-CceeeeccCCcEEEEccCC--------------------CceeeEEEecCCCCceeeEE
Confidence 34444 35899999999988 7799999999999999987 2444556667665 899999
Q ss_pred eCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCce--E
Q 018235 237 WNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL--T 314 (359)
Q Consensus 237 ~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~--~ 314 (359)
|++.+ +|.|.+.+|.|.-||+.+ .+.. ..+....+.|++++.+|.+. .++.|+.||.+.+++.... ... .
T Consensus 77 W~e~~--RLFS~g~sg~i~EwDl~~-lk~~---~~~d~~gg~IWsiai~p~~~-~l~IgcddGvl~~~s~~p~-~I~~~r 148 (691)
T KOG2048|consen 77 WAEGG--RLFSSGLSGSITEWDLHT-LKQK---YNIDSNGGAIWSIAINPENT-ILAIGCDDGVLYDFSIGPD-KITYKR 148 (691)
T ss_pred EccCC--eEEeecCCceEEEEeccc-Ccee---EEecCCCcceeEEEeCCccc-eEEeecCCceEEEEecCCc-eEEEEe
Confidence 99554 799999999999999987 4433 44566778999999999998 9999999997777777664 211 1
Q ss_pred EeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 315 SFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 315 ~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
.+....+.|.+++|+|++.-++.++. |+.|++||+..+.
T Consensus 149 ~l~rq~sRvLslsw~~~~~~i~~Gs~----Dg~Iriwd~~~~~ 187 (691)
T KOG2048|consen 149 SLMRQKSRVLSLSWNPTGTKIAGGSI----DGVIRIWDVKSGQ 187 (691)
T ss_pred ecccccceEEEEEecCCccEEEeccc----CceEEEEEcCCCc
Confidence 23455789999999999998888887 9999999998764
No 180
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.49 E-value=1.4e-11 Score=115.36 Aligned_cols=170 Identities=25% Similarity=0.395 Sum_probs=135.4
Q ss_pred eEEEEEecCCCceeeEEEeCCCCcEEEEEeC-CCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEE
Q 018235 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWAD-TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYA 234 (359)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~-dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 234 (359)
........|...|..+.|+|.+ ..+++++. ++.+++|++.. ...+..+.+|...+.+
T Consensus 146 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~v~~ 203 (466)
T COG2319 146 KLIRTLEGHSESVTSLAFSPDG-KLLASGSSLDGTIKLWDLRT---------------------GKPLSTLAGHTDPVSS 203 (466)
T ss_pred eEEEEEecCcccEEEEEECCCC-CEEEecCCCCCceEEEEcCC---------------------CceEEeeccCCCceEE
Confidence 4556778999999999999999 47777775 99999999986 4667788889999999
Q ss_pred EEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCc-cccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCce
Q 018235 235 IDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPN-PFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL 313 (359)
Q Consensus 235 l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~-~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~ 313 (359)
++|+|.+...+++++.|+.|++||... +... . .+.+|...+ -..|+|++. ++++++.|+.+++|+++.....+
T Consensus 204 ~~~~~~~~~~~~~~~~d~~i~~wd~~~-~~~~---~~~~~~~~~~~-~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~ 277 (466)
T COG2319 204 LAFSPDGGLLIASGSSDGTIRLWDLST-GKLL---RSTLSGHSDSV-VSSFSPDGS-LLASGSSDGTIRLWDLRSSSSLL 277 (466)
T ss_pred EEEcCCcceEEEEecCCCcEEEEECCC-CcEE---eeecCCCCcce-eEeECCCCC-EEEEecCCCcEEEeeecCCCcEE
Confidence 999988863555559999999998874 4433 3 577788775 448999995 88899999999999999873324
Q ss_pred EEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 314 TSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 314 ~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
..+..|...|.++.|+|++..++.+.. ++.+++|+.....
T Consensus 278 ~~~~~~~~~v~~~~~~~~~~~~~~~~~----d~~~~~~~~~~~~ 317 (466)
T COG2319 278 RTLSGHSSSVLSVAFSPDGKLLASGSS----DGTVRLWDLETGK 317 (466)
T ss_pred EEEecCCccEEEEEECCCCCEEEEeeC----CCcEEEEEcCCCc
Confidence 444678899999999998887777433 5669999877654
No 181
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=2e-12 Score=112.11 Aligned_cols=155 Identities=15% Similarity=0.207 Sum_probs=120.8
Q ss_pred CCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCC
Q 018235 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (359)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~ 243 (359)
-...|.+++|+|.+..++|+ +-||.+++|++... .....| .|..++.+.+|.+..
T Consensus 12 P~d~IS~v~f~~~~~~LLvs-sWDgslrlYdv~~~---------------------~l~~~~-~~~~plL~c~F~d~~-- 66 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVS-SWDGSLRLYDVPAN---------------------SLKLKF-KHGAPLLDCAFADES-- 66 (323)
T ss_pred ChhceeeEEEcCcCCcEEEE-eccCcEEEEeccch---------------------hhhhhe-ecCCceeeeeccCCc--
Confidence 46789999999988555554 69999999999872 222223 578899999999854
Q ss_pred eEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCE
Q 018235 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADV 323 (359)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V 323 (359)
.+++|+.||.|+++|++++.. ..+..|...|.+|.+++-.. .+++||-|++|++||.|.. .+...+..- ..|
T Consensus 67 ~~~~G~~dg~vr~~Dln~~~~-----~~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~~-~~~~~~d~~-kkV 138 (323)
T KOG1036|consen 67 TIVTGGLDGQVRRYDLNTGNE-----DQIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRNK-VVVGTFDQG-KKV 138 (323)
T ss_pred eEEEeccCceEEEEEecCCcc-----eeeccCCCceEEEEeeccCC-eEEEcccCccEEEEecccc-ccccccccC-ceE
Confidence 699999999999999988433 34667999999999998766 9999999999999999974 444455433 368
Q ss_pred EEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 324 NVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 324 ~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
.+++.+ +..|+.++. +..+.+||.+...
T Consensus 139 y~~~v~--g~~LvVg~~----~r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 139 YCMDVS--GNRLVVGTS----DRKVLIYDLRNLD 166 (323)
T ss_pred EEEecc--CCEEEEeec----CceEEEEEccccc
Confidence 887766 566676665 7789999988653
No 182
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.48 E-value=6.3e-13 Score=112.95 Aligned_cols=172 Identities=15% Similarity=0.223 Sum_probs=129.2
Q ss_pred cCCCceeeEEEeCCC--CcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCC
Q 018235 163 AHQGCVNRIRAMTQN--PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI 240 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~--~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~ 240 (359)
+-.|.+.+.++.... ..+++.|-++|.|.+||+......+..+. ..+...-...|..++.++++.+.
T Consensus 148 ~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~-----------~~kv~~~~ash~qpvlsldyas~ 216 (323)
T KOG0322|consen 148 SKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQ-----------SSKVESPNASHKQPVLSLDYASS 216 (323)
T ss_pred cccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecccc-----------ccccccchhhccCcceeeeechh
Confidence 455778887753322 24677788999999999998533222111 13445566789999999999877
Q ss_pred CCCeEEEEcCCCcEEEEecCCC-CcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecC
Q 018235 241 TTGRLVTGDCNSCIYLWEPASD-ATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAH 319 (359)
Q Consensus 241 ~~~~l~sgs~dg~I~lwd~~~~-~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h 319 (359)
-. .=++|+.+..+..|.++.. +.... .....--...|..+..-|+++ +|||++-|+.||||.-|+. .++..++-|
T Consensus 217 ~~-rGisgga~dkl~~~Sl~~s~gslq~-~~e~~lknpGv~gvrIRpD~K-IlATAGWD~RiRVyswrtl-~pLAVLkyH 292 (323)
T KOG0322|consen 217 CD-RGISGGADDKLVMYSLNHSTGSLQI-RKEITLKNPGVSGVRIRPDGK-ILATAGWDHRIRVYSWRTL-NPLAVLKYH 292 (323)
T ss_pred hc-CCcCCCccccceeeeeccccCcccc-cceEEecCCCccceEEccCCc-EEeecccCCcEEEEEeccC-Cchhhhhhh
Confidence 65 5567777778889988753 22211 111222335688899999999 9999999999999999998 888888999
Q ss_pred CCCEEEEEEcCCCCeEEEEeeecccceEEEEEeC
Q 018235 320 NADVNVISWNRCWLAVCWHLEVMMEHFLFMILDC 353 (359)
Q Consensus 320 ~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~ 353 (359)
.+.|++++|+|+..+++.+.. |..|.+|+.
T Consensus 293 sagvn~vAfspd~~lmAaask----D~rISLWkL 322 (323)
T KOG0322|consen 293 SAGVNAVAFSPDCELMAAASK----DARISLWKL 322 (323)
T ss_pred hcceeEEEeCCCCchhhhccC----CceEEeeec
Confidence 999999999999888887765 999999975
No 183
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=6.7e-13 Score=123.97 Aligned_cols=158 Identities=16% Similarity=0.214 Sum_probs=127.3
Q ss_pred ecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCC
Q 018235 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPIT 241 (359)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~ 241 (359)
..-.|.|.++.|+|..+.+|++ + ...|+|||+.. ...+..+......+..|+.+|.|
T Consensus 563 ~kskG~vq~v~FHPs~p~lfVa-T-q~~vRiYdL~k---------------------qelvKkL~tg~kwiS~msihp~G 619 (733)
T KOG0650|consen 563 RKSKGLVQRVKFHPSKPYLFVA-T-QRSVRIYDLSK---------------------QELVKKLLTGSKWISSMSIHPNG 619 (733)
T ss_pred hhcCCceeEEEecCCCceEEEE-e-ccceEEEehhH---------------------HHHHHHHhcCCeeeeeeeecCCC
Confidence 3457899999999998655543 3 46899999987 34444444445678899999999
Q ss_pred CCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCC--------Cce
Q 018235 242 TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK--------SAL 313 (359)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~--------~~~ 313 (359)
. .|+.|+.|+.++.+|+.-+.++. +.+..|...|++|+||+.-+ +||+|+.||++.|+.-+-.. -++
T Consensus 620 D-nli~gs~d~k~~WfDldlsskPy---k~lr~H~~avr~Va~H~ryP-Lfas~sdDgtv~Vfhg~VY~Dl~qnpliVPl 694 (733)
T KOG0650|consen 620 D-NLILGSYDKKMCWFDLDLSSKPY---KTLRLHEKAVRSVAFHKRYP-LFASGSDDGTVIVFHGMVYNDLLQNPLIVPL 694 (733)
T ss_pred C-eEEEecCCCeeEEEEcccCcchh---HHhhhhhhhhhhhhhccccc-eeeeecCCCcEEEEeeeeehhhhcCCceEee
Confidence 8 88889999999999998755554 77888999999999999999 99999999999999654321 145
Q ss_pred EEeecCCCC----EEEEEEcCCCCeEEEEeeecccceEEEEE
Q 018235 314 TSFKAHNAD----VNVISWNRCWLAVCWHLEVMMEHFLFMIL 351 (359)
Q Consensus 314 ~~~~~h~~~----V~~i~~s~~~~~l~~~~~~~~~d~~i~iw 351 (359)
..+.+|... |....|+|...+|..+.+ +++|++|
T Consensus 695 K~L~gH~~~~~~gVLd~~wHP~qpWLfsAGA----d~tirlf 732 (733)
T KOG0650|consen 695 KRLRGHEKTNDLGVLDTIWHPRQPWLFSAGA----DGTIRLF 732 (733)
T ss_pred eeccCceeecccceEeecccCCCceEEecCC----CceEEee
Confidence 566788654 888899999999998877 8999998
No 184
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.47 E-value=3.7e-11 Score=104.82 Aligned_cols=184 Identities=17% Similarity=0.153 Sum_probs=135.5
Q ss_pred ccCCCCceeeeChhHhhhhhcccccCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEee-ccCCcccC
Q 018235 42 DKLEEGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVS-NISGKRRE 120 (359)
Q Consensus 42 ~~~~~~~~l~~~~~~Y~~~~~~~~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~-~l~~~~~~ 120 (359)
|+..++..+.+|...|..+.++...-|..++..-++ ++|+-. .|.|+||.+. |+...
T Consensus 70 pky~pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~-------------riVvvl------~~~I~VytF~~n~k~l--- 127 (346)
T KOG2111|consen 70 PKYPPNKVIIWDDLKERCIIELSFNSEIKAVKLRRD-------------RIVVVL------ENKIYVYTFPDNPKLL--- 127 (346)
T ss_pred CCCCCceEEEEecccCcEEEEEEeccceeeEEEcCC-------------eEEEEe------cCeEEEEEcCCChhhe---
Confidence 457888899999999999999999999999998887 344434 6789999985 22111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEE-EeCCCcEEEEECCCCc
Q 018235 121 LVPNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICAS-WADTGHVQVWDLRSHL 199 (359)
Q Consensus 121 ~~~~~~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat-~s~dg~V~iwd~~~~~ 199 (359)
.....+..+..+.++.-.... .++|. |...|.|+|-|+...
T Consensus 128 ------------------------------------~~~et~~NPkGlC~~~~~~~k-~~LafPg~k~GqvQi~dL~~~- 169 (346)
T KOG2111|consen 128 ------------------------------------HVIETRSNPKGLCSLCPTSNK-SLLAFPGFKTGQVQIVDLAST- 169 (346)
T ss_pred ------------------------------------eeeecccCCCceEeecCCCCc-eEEEcCCCccceEEEEEhhhc-
Confidence 112222222223222222222 34443 557799999999872
Q ss_pred cccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCc-EEEEecCCCCcceecCccccC--CC
Q 018235 200 NALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSC-IYLWEPASDATWNVDPNPFIG--HS 276 (359)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~-I~lwd~~~~~~~~~~~~~~~~--h~ 276 (359)
...+-..+..|...|.+++.+.+|. ++||+|..|+ |+|||..+ +..+. .+.. ..
T Consensus 170 ------------------~~~~p~~I~AH~s~Iacv~Ln~~Gt-~vATaStkGTLIRIFdt~~-g~~l~---E~RRG~d~ 226 (346)
T KOG2111|consen 170 ------------------KPNAPSIINAHDSDIACVALNLQGT-LVATASTKGTLIRIFDTED-GTLLQ---ELRRGVDR 226 (346)
T ss_pred ------------------CcCCceEEEcccCceeEEEEcCCcc-EEEEeccCcEEEEEEEcCC-CcEee---eeecCCch
Confidence 1224577889999999999999998 9999999998 79999988 55552 3322 44
Q ss_pred CCeEEEEecCCCCCEEEEEeCCCcEEEEECCCC
Q 018235 277 ASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG 309 (359)
Q Consensus 277 ~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~ 309 (359)
..|++++|||+.. +||..|..|+|+|+.++..
T Consensus 227 A~iy~iaFSp~~s-~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 227 ADIYCIAFSPNSS-WLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred heEEEEEeCCCcc-EEEEEcCCCeEEEEEeecC
Confidence 7899999999999 9999999999999998864
No 185
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.44 E-value=6.4e-12 Score=121.54 Aligned_cols=170 Identities=16% Similarity=0.185 Sum_probs=139.0
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceE
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (359)
..++.+++.++...|+++.-+|-- .++|.|..+|+|.|+++.. .+.+.+|+...+.|+
T Consensus 191 t~K~v~~f~~~~s~IT~ieqsPaL-DVVaiG~~~G~ViifNlK~---------------------dkil~sFk~d~g~Vt 248 (910)
T KOG1539|consen 191 TGKVVYTFQEFFSRITAIEQSPAL-DVVAIGLENGTVIIFNLKF---------------------DKILMSFKQDWGRVT 248 (910)
T ss_pred cCcEEEEecccccceeEeccCCcc-eEEEEeccCceEEEEEccc---------------------CcEEEEEEcccccee
Confidence 667889999999999999999977 7999999999999999998 677888976678999
Q ss_pred EEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCC---
Q 018235 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK--- 310 (359)
Q Consensus 234 ~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~--- 310 (359)
+++|.-+|+..||+|+..|.+.+||+.. .+.. ......|.++|..+.|-|..+ ++++.+.|.++++|=..++.
T Consensus 249 slSFrtDG~p~las~~~~G~m~~wDLe~-kkl~--~v~~nah~~sv~~~~fl~~ep-Vl~ta~~DnSlk~~vfD~~dg~p 324 (910)
T KOG1539|consen 249 SLSFRTDGNPLLASGRSNGDMAFWDLEK-KKLI--NVTRNAHYGSVTGATFLPGEP-VLVTAGADNSLKVWVFDSGDGVP 324 (910)
T ss_pred EEEeccCCCeeEEeccCCceEEEEEcCC-Ceee--eeeeccccCCcccceecCCCc-eEeeccCCCceeEEEeeCCCCcc
Confidence 9999999998999999999999999976 3332 244557999999999999998 99999999999998655542
Q ss_pred CceEEeecCCCCEEEEEEc-CCCCeEEEEeeecccceEEEEEeC
Q 018235 311 SALTSFKAHNADVNVISWN-RCWLAVCWHLEVMMEHFLFMILDC 353 (359)
Q Consensus 311 ~~~~~~~~h~~~V~~i~~s-~~~~~l~~~~~~~~~d~~i~iwd~ 353 (359)
..++.-.+|..+..||.|- .++.+++.... |.+++.+.+
T Consensus 325 R~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~----Drt~r~fs~ 364 (910)
T KOG1539|consen 325 RLLRSRGGHSAPPSCIRFYGSQGHFILSAKQ----DRTLRSFSV 364 (910)
T ss_pred hheeeccCCCCCchheeeeccCcEEEEeccc----Ccchhhhhh
Confidence 2334448999999999998 45555555443 666665543
No 186
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=2.7e-12 Score=115.55 Aligned_cols=143 Identities=18% Similarity=0.200 Sum_probs=115.5
Q ss_pred eeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEE
Q 018235 169 NRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTG 248 (359)
Q Consensus 169 ~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sg 248 (359)
..++|+.++ ..+|+|+.||+++||+... ...+.....|..+|.+|+|||++. .|++-
T Consensus 148 k~vaf~~~g-s~latgg~dg~lRv~~~Ps---------------------~~t~l~e~~~~~eV~DL~FS~dgk-~lasi 204 (398)
T KOG0771|consen 148 KVVAFNGDG-SKLATGGTDGTLRVWEWPS---------------------MLTILEEIAHHAEVKDLDFSPDGK-FLASI 204 (398)
T ss_pred eEEEEcCCC-CEeeeccccceEEEEecCc---------------------chhhhhhHhhcCccccceeCCCCc-EEEEe
Confidence 678899988 7999999999999999876 456667778999999999999999 99999
Q ss_pred cCCCcEEEEecCCCCccee--------------------------------------------------cCccccCCCCC
Q 018235 249 DCNSCIYLWEPASDATWNV--------------------------------------------------DPNPFIGHSAS 278 (359)
Q Consensus 249 s~dg~I~lwd~~~~~~~~~--------------------------------------------------~~~~~~~h~~~ 278 (359)
+.| ..+||+.+++..+.. ..+........
T Consensus 205 g~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~s 283 (398)
T KOG0771|consen 205 GAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKS 283 (398)
T ss_pred cCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCc
Confidence 999 899999987511000 00000011247
Q ss_pred eEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe-ecCCCCEEEEEEcCCCCeEEE
Q 018235 279 VEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF-KAHNADVNVISWNRCWLAVCW 337 (359)
Q Consensus 279 V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~-~~h~~~V~~i~~s~~~~~l~~ 337 (359)
|.+++.+++|+ ++|.|+.||.|.|++.... +.++.+ .+|...|+.+.|+|+.++++.
T Consensus 284 iSsl~VS~dGk-f~AlGT~dGsVai~~~~~l-q~~~~vk~aH~~~VT~ltF~Pdsr~~~s 341 (398)
T KOG0771|consen 284 ISSLAVSDDGK-FLALGTMDGSVAIYDAKSL-QRLQYVKEAHLGFVTGLTFSPDSRYLAS 341 (398)
T ss_pred ceeEEEcCCCc-EEEEeccCCcEEEEEecee-eeeEeehhhheeeeeeEEEcCCcCcccc
Confidence 88999999999 9999999999999999987 455444 799999999999999887765
No 187
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.43 E-value=5.4e-11 Score=105.63 Aligned_cols=161 Identities=13% Similarity=0.190 Sum_probs=120.0
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecC---CCCceEEE
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGG---HKDEGYAI 235 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---h~~~v~~l 235 (359)
+.-+-....|.+|+++.+. +++. -. ..|+|||+.. .+++.++.. +...+.++
T Consensus 81 ICe~~fpt~IL~VrmNr~R--LvV~-Le-e~IyIydI~~---------------------MklLhTI~t~~~n~~gl~Al 135 (391)
T KOG2110|consen 81 ICEIFFPTSILAVRMNRKR--LVVC-LE-ESIYIYDIKD---------------------MKLLHTIETTPPNPKGLCAL 135 (391)
T ss_pred EEEEecCCceEEEEEccce--EEEE-Ec-ccEEEEeccc---------------------ceeehhhhccCCCccceEee
Confidence 3444567889999998754 4443 33 3499999998 455555533 34456777
Q ss_pred EeCCCCCCeEEEE--cCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCc-EEEEECCCCCCc
Q 018235 236 DWNPITTGRLVTG--DCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGH-IAIWDTRVGKSA 312 (359)
Q Consensus 236 ~~sp~~~~~l~sg--s~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~-I~iwD~r~~~~~ 312 (359)
+.|+.+. +||-- ...|.|.|||..+ -+.. ..+..|++.+-+++|+|+|. +|||+|+.|+ ||++.+..+ +.
T Consensus 136 S~n~~n~-ylAyp~s~t~GdV~l~d~~n-l~~v---~~I~aH~~~lAalafs~~G~-llATASeKGTVIRVf~v~~G-~k 208 (391)
T KOG2110|consen 136 SPNNANC-YLAYPGSTTSGDVVLFDTIN-LQPV---NTINAHKGPLAALAFSPDGT-LLATASEKGTVIRVFSVPEG-QK 208 (391)
T ss_pred ccCCCCc-eEEecCCCCCceEEEEEccc-ceee---eEEEecCCceeEEEECCCCC-EEEEeccCceEEEEEEcCCc-cE
Confidence 7777766 66542 3368899999977 3333 56789999999999999999 9999999998 899999988 66
Q ss_pred eEEeecC--CCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 313 LTSFKAH--NADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 313 ~~~~~~h--~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
+..+..- ...|.+|+|+|++++|+.... -.+|.++....
T Consensus 209 l~eFRRG~~~~~IySL~Fs~ds~~L~~sS~----TeTVHiFKL~~ 249 (391)
T KOG2110|consen 209 LYEFRRGTYPVSIYSLSFSPDSQFLAASSN----TETVHIFKLEK 249 (391)
T ss_pred eeeeeCCceeeEEEEEEECCCCCeEEEecC----CCeEEEEEecc
Confidence 7777432 346889999999999988876 56677776543
No 188
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.41 E-value=4.2e-11 Score=109.03 Aligned_cols=166 Identities=11% Similarity=0.087 Sum_probs=126.1
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCC-ceEEEEe
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKD-EGYAIDW 237 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~ 237 (359)
..+.--..+|.+++|.|+|...+++++.....+.||+... +..++....++.. .+.....
T Consensus 251 qS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a-------------------k~~k~~~~~g~e~~~~e~FeV 311 (514)
T KOG2055|consen 251 QSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA-------------------KVTKLKPPYGVEEKSMERFEV 311 (514)
T ss_pred eeeeeccCccceeeecCCCceEEEecccceEEEEeecccc-------------------ccccccCCCCcccchhheeEe
Confidence 3333446799999999999658999999999999999762 1223333444443 5567788
Q ss_pred CCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEee
Q 018235 238 NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK 317 (359)
Q Consensus 238 sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~ 317 (359)
|++++ +|+..+..|.|+|.-..+ +.++ ..+. -.+.|.+++|+.++. .|++++.+|.|.+||++.. .++..+.
T Consensus 312 Shd~~-fia~~G~~G~I~lLhakT-~eli---~s~K-ieG~v~~~~fsSdsk-~l~~~~~~GeV~v~nl~~~-~~~~rf~ 383 (514)
T KOG2055|consen 312 SHDSN-FIAIAGNNGHIHLLHAKT-KELI---TSFK-IEGVVSDFTFSSDSK-ELLASGGTGEVYVWNLRQN-SCLHRFV 383 (514)
T ss_pred cCCCC-eEEEcccCceEEeehhhh-hhhh---heee-eccEEeeEEEecCCc-EEEEEcCCceEEEEecCCc-ceEEEEe
Confidence 99998 999999999999988766 5554 3332 457899999999998 7777888899999999997 7777774
Q ss_pred cCCC-CEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 318 AHNA-DVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 318 ~h~~-~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
...+ .-++++.++++.+++++.. -+.+.||+..+
T Consensus 384 D~G~v~gts~~~S~ng~ylA~GS~----~GiVNIYd~~s 418 (514)
T KOG2055|consen 384 DDGSVHGTSLCISLNGSYLATGSD----SGIVNIYDGNS 418 (514)
T ss_pred ecCccceeeeeecCCCceEEeccC----cceEEEeccch
Confidence 2221 2366778899999998876 78899998543
No 189
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.40 E-value=8.2e-13 Score=120.10 Aligned_cols=160 Identities=15% Similarity=0.169 Sum_probs=129.0
Q ss_pred eEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEE
Q 018235 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAI 235 (359)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 235 (359)
+-.+++.. ...|+++.|.|.. .++++++..|.++.-|+.. ++.+..+..-.+.+..|
T Consensus 201 tElHClk~-~~~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~---------------------GklVa~~~t~~G~~~vm 257 (545)
T KOG1272|consen 201 TELHCLKR-HIRVARLEFLPYH-FLLVAASEAGFLKYQDVST---------------------GKLVASIRTGAGRTDVM 257 (545)
T ss_pred cEEeehhh-cCchhhhcccchh-heeeecccCCceEEEeech---------------------hhhhHHHHccCCccchh
Confidence 33344433 4689999999988 8999999999999999987 67777777777788899
Q ss_pred EeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEE
Q 018235 236 DWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS 315 (359)
Q Consensus 236 ~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~ 315 (359)
.-+|.+. .+-+|...|+|.+|.+.. ..++ ..+..|.++|.+|++.|.|. ++||.+.|+.|+|||+|+. ..+.+
T Consensus 258 ~qNP~Na-Vih~GhsnGtVSlWSP~s-kePL---vKiLcH~g~V~siAv~~~G~-YMaTtG~Dr~~kIWDlR~~-~ql~t 330 (545)
T KOG1272|consen 258 KQNPYNA-VIHLGHSNGTVSLWSPNS-KEPL---VKILCHRGPVSSIAVDRGGR-YMATTGLDRKVKIWDLRNF-YQLHT 330 (545)
T ss_pred hcCCccc-eEEEcCCCceEEecCCCC-cchH---HHHHhcCCCcceEEECCCCc-EEeecccccceeEeeeccc-cccce
Confidence 9999998 999999999999999977 4554 45678999999999999999 9999999999999999998 45555
Q ss_pred eecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEe
Q 018235 316 FKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILD 352 (359)
Q Consensus 316 ~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd 352 (359)
+.. ..+.+.+++|..|-+.+.- ...+.||.
T Consensus 331 ~~t-p~~a~~ls~SqkglLA~~~------G~~v~iw~ 360 (545)
T KOG1272|consen 331 YRT-PHPASNLSLSQKGLLALSY------GDHVQIWK 360 (545)
T ss_pred eec-CCCccccccccccceeeec------CCeeeeeh
Confidence 543 3456778888766543322 34588885
No 190
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.40 E-value=2.4e-11 Score=120.24 Aligned_cols=167 Identities=19% Similarity=0.195 Sum_probs=127.4
Q ss_pred CCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCc--eEEEEeCCCC
Q 018235 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDE--GYAIDWNPIT 241 (359)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~l~~sp~~ 241 (359)
-...|+.+.....+.+++|.|..||.|++||.+... ...++...+.|+.. |..+.+.+.|
T Consensus 1207 s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~------------------~ds~v~~~R~h~~~~~Iv~~slq~~G 1268 (1387)
T KOG1517|consen 1207 SSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAP------------------PDSLVCVYREHNDVEPIVHLSLQRQG 1268 (1387)
T ss_pred CCccceeecccccCCceEEEeecCCceEEeecccCC------------------ccccceeecccCCcccceeEEeecCC
Confidence 456677776655445899999999999999998732 23567788889987 9999999988
Q ss_pred CCeEEEEcCCCcEEEEecCCCCcceecCccccCCC--C-CeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe--
Q 018235 242 TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHS--A-SVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF-- 316 (359)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~--~-~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~-- 316 (359)
-+.|+||+.+|.|++||+|...... ......|. + .++++..|+..+ ++|+|+. +.|+||++... .+..+
T Consensus 1269 ~~elvSgs~~G~I~~~DlR~~~~e~--~~~iv~~~~yGs~lTal~VH~hap-iiAsGs~-q~ikIy~~~G~--~l~~~k~ 1342 (1387)
T KOG1517|consen 1269 LGELVSGSQDGDIQLLDLRMSSKET--FLTIVAHWEYGSALTALTVHEHAP-IIASGSA-QLIKIYSLSGE--QLNIIKY 1342 (1387)
T ss_pred CcceeeeccCCeEEEEecccCcccc--cceeeeccccCccceeeeeccCCC-eeeecCc-ceEEEEecChh--hhccccc
Confidence 8789999999999999999732111 11222333 3 589999999998 9999999 99999999864 22222
Q ss_pred -----ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 317 -----KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 317 -----~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
......+.|++|+|....++.+.. |..|.|+....+.+
T Consensus 1343 n~~F~~q~~gs~scL~FHP~~~llAaG~~----Ds~V~iYs~~k~~~ 1385 (1387)
T KOG1517|consen 1343 NPGFMGQRIGSVSCLAFHPHRLLLAAGSA----DSTVSIYSCEKPRL 1385 (1387)
T ss_pred CcccccCcCCCcceeeecchhHhhhhccC----CceEEEeecCCcCC
Confidence 122345799999999999988865 89999998766543
No 191
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=1.2e-11 Score=114.78 Aligned_cols=189 Identities=14% Similarity=0.116 Sum_probs=134.0
Q ss_pred CCeEEEEEecCCCceeeEEEeCCC-CcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCce
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQN-PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEG 232 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~-~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 232 (359)
.+.+.....+|.+-|.+++|.|.. ..+++||+.|..|++||+..........+ ...+.+.+..|...|
T Consensus 82 ~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~-----------~~~~~~~~~cht~rV 150 (758)
T KOG1310|consen 82 YKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHG-----------MEETTRCWSCHTDRV 150 (758)
T ss_pred cceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccC-----------ccchhhhhhhhhhhh
Confidence 344445667999999999999954 47899999999999999986321111111 245667788999999
Q ss_pred EEEEeCCCCCCeEEEEcCCCcEEEEecCCCCccee------cCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEEC
Q 018235 233 YAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNV------DPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDT 306 (359)
Q Consensus 233 ~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~------~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~ 306 (359)
--|+-.|.++..+.+++.||+|+-+|+|.+..+.. ....+...--...++..+|..+++||.|+.|-..++||.
T Consensus 151 Kria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 151 KRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDR 230 (758)
T ss_pred hheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhh
Confidence 99999999988999999999999999998433220 011122222355789999999999999999999999995
Q ss_pred CCCCC-----------------ceEEe-ecCC-----------CCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 307 RVGKS-----------------ALTSF-KAHN-----------ADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 307 r~~~~-----------------~~~~~-~~h~-----------~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
|...+ ++..+ .+|- ..++-+.|||+|.-|+.... .-.+.+++++.++
T Consensus 231 Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~----gEhVYlfdvn~~~ 306 (758)
T KOG1310|consen 231 RRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWG----GEHVYLFDVNEDK 306 (758)
T ss_pred hhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeC----CeEEEEEeecCCC
Confidence 53211 12222 2332 11456789999987776654 3457777776543
No 192
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.38 E-value=1.4e-11 Score=116.94 Aligned_cols=174 Identities=14% Similarity=0.230 Sum_probs=125.8
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
..+..|.-.|++++|+|++ .+|++.+.|.++.+|........ .......+.|+.-|++.+|+
T Consensus 566 ~~L~~HsLTVT~l~FSpdg-~~LLsvsRDRt~sl~~~~~~~~~-----------------e~~fa~~k~HtRIIWdcsW~ 627 (764)
T KOG1063|consen 566 QELEGHSLTVTRLAFSPDG-RYLLSVSRDRTVSLYEVQEDIKD-----------------EFRFACLKAHTRIIWDCSWS 627 (764)
T ss_pred heecccceEEEEEEECCCC-cEEEEeecCceEEeeeeecccch-----------------hhhhccccccceEEEEcccC
Confidence 3567999999999999999 89999999999999998652111 01122367899999999999
Q ss_pred CCCCCeEEEEcCCCcEEEEecCCCC-cceecCccccCCCCCeEEEEecCCCCC----EEEEEeCCCcEEEEECCC-CC--
Q 018235 239 PITTGRLVTGDCNSCIYLWEPASDA-TWNVDPNPFIGHSASVEDLQWSPTEPD----VFASCSVDGHIAIWDTRV-GK-- 310 (359)
Q Consensus 239 p~~~~~l~sgs~dg~I~lwd~~~~~-~~~~~~~~~~~h~~~V~~v~~sp~~~~----~las~s~Dg~I~iwD~r~-~~-- 310 (359)
|+.. +|+|+|.|.+|++|...... +.+. ......+...|++++|.|.-.+ +++.|-..|.|.||.... ..
T Consensus 628 pde~-~FaTaSRDK~VkVW~~~~~~d~~i~-~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~ 705 (764)
T KOG1063|consen 628 PDEK-YFATASRDKKVKVWEEPDLRDKYIS-RFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQV 705 (764)
T ss_pred cccc-eeEEecCCceEEEEeccCchhhhhh-hhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccc
Confidence 9998 79999999999999887631 2221 1134458899999999885332 889999999999998541 10
Q ss_pred ---C-----ceEEeecCCCCEEEEEEcCCC--------CeEEEEeeecccceEEEEEeCc
Q 018235 311 ---S-----ALTSFKAHNADVNVISWNRCW--------LAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 311 ---~-----~~~~~~~h~~~V~~i~~s~~~--------~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
. .+....+|.+.|+.+.|.|.. ..+-. ..++.|..+++++..
T Consensus 706 ~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~l--a~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 706 TVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNL--AVGGDDESVRIFNVD 763 (764)
T ss_pred cceeeeeccccccccChHHhhheeEeccccccccccccceeEE--eeecccceeEEeecc
Confidence 0 111124677889999999862 22211 122348889998753
No 193
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.38 E-value=1.9e-12 Score=122.40 Aligned_cols=147 Identities=16% Similarity=0.369 Sum_probs=119.2
Q ss_pred ceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEE
Q 018235 167 CVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLV 246 (359)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~ 246 (359)
+|+.++|-|+|..++..++ ..+.|||... +..+.++++|.+.|++++|+.+|. ++|
T Consensus 14 ci~d~afkPDGsqL~lAAg--~rlliyD~nd---------------------G~llqtLKgHKDtVycVAys~dGk-rFA 69 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG--SRLLVYDTSD---------------------GTLLQPLKGHKDTVYCVAYAKDGK-RFA 69 (1081)
T ss_pred chheeEECCCCceEEEecC--CEEEEEeCCC---------------------cccccccccccceEEEEEEccCCc-eec
Confidence 9999999999966665543 6899999987 677889999999999999999999 999
Q ss_pred EEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEE
Q 018235 247 TGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVI 326 (359)
Q Consensus 247 sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i 326 (359)
||+.|..|.+|...-.+.. -..|...|.|+.|+|-.. .++||+-. -.-+|..... .+... .....|++.
T Consensus 70 SG~aDK~VI~W~~klEG~L------kYSH~D~IQCMsFNP~~h-~LasCsLs-dFglWS~~qK--~V~K~-kss~R~~~C 138 (1081)
T KOG1538|consen 70 SGSADKSVIIWTSKLEGIL------KYSHNDAIQCMSFNPITH-QLASCSLS-DFGLWSPEQK--SVSKH-KSSSRIICC 138 (1081)
T ss_pred cCCCceeEEEeccccccee------eeccCCeeeEeecCchHH-Hhhhcchh-hccccChhhh--hHHhh-hhheeEEEe
Confidence 9999999999998764432 235999999999999987 89999864 3567876653 22222 234578999
Q ss_pred EEcCCCCeEEEEeeecccceEEEEEe
Q 018235 327 SWNRCWLAVCWHLEVMMEHFLFMILD 352 (359)
Q Consensus 327 ~~s~~~~~l~~~~~~~~~d~~i~iwd 352 (359)
+|+.+|.+++.+.. +++|.|-+
T Consensus 139 sWtnDGqylalG~~----nGTIsiRN 160 (1081)
T KOG1538|consen 139 SWTNDGQYLALGMF----NGTISIRN 160 (1081)
T ss_pred eecCCCcEEEEecc----CceEEeec
Confidence 99999999999987 77777654
No 194
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=9.4e-13 Score=123.00 Aligned_cols=122 Identities=14% Similarity=0.236 Sum_probs=103.8
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
.++..-...|..++.+|.|.+ ++.++.|+.+..||+.. ..+|..++..|...+.+++++
T Consensus 601 KkL~tg~kwiS~msihp~GDn-li~gs~d~k~~WfDldl--------------------sskPyk~lr~H~~avr~Va~H 659 (733)
T KOG0650|consen 601 KKLLTGSKWISSMSIHPNGDN-LILGSYDKKMCWFDLDL--------------------SSKPYKTLRLHEKAVRSVAFH 659 (733)
T ss_pred HHHhcCCeeeeeeeecCCCCe-EEEecCCCeeEEEEccc--------------------CcchhHHhhhhhhhhhhhhhc
Confidence 344455667888999999854 55579999999999988 468999999999999999999
Q ss_pred CCCCCeEEEEcCCCcEEEEe------cCCCCcceecCccccCCCCC----eEEEEecCCCCCEEEEEeCCCcEEEE
Q 018235 239 PITTGRLVTGDCNSCIYLWE------PASDATWNVDPNPFIGHSAS----VEDLQWSPTEPDVFASCSVDGHIAIW 304 (359)
Q Consensus 239 p~~~~~l~sgs~dg~I~lwd------~~~~~~~~~~~~~~~~h~~~----V~~v~~sp~~~~~las~s~Dg~I~iw 304 (359)
+.-+ +|+||+.||++.|+- +.. ...++++..+.+|... |.++.|||..+ .|.|++.||+|++|
T Consensus 660 ~ryP-Lfas~sdDgtv~Vfhg~VY~Dl~q-npliVPlK~L~gH~~~~~~gVLd~~wHP~qp-WLfsAGAd~tirlf 732 (733)
T KOG0650|consen 660 KRYP-LFASGSDDGTVIVFHGMVYNDLLQ-NPLIVPLKRLRGHEKTNDLGVLDTIWHPRQP-WLFSAGADGTIRLF 732 (733)
T ss_pred cccc-eeeeecCCCcEEEEeeeeehhhhc-CCceEeeeeccCceeecccceEeecccCCCc-eEEecCCCceEEee
Confidence 9998 999999999999883 322 4457778889999876 99999999999 99999999999998
No 195
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.37 E-value=6.9e-11 Score=100.80 Aligned_cols=114 Identities=19% Similarity=0.415 Sum_probs=83.6
Q ss_pred cCCCceeeEEEeCCCCcEEE-EEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCC
Q 018235 163 AHQGCVNRIRAMTQNPHICA-SWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPIT 241 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~la-t~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~ 241 (359)
...++|..++|+|++..+++ +|...+.|.|||+.. .++..+. ...+..+.|||.|
T Consensus 57 ~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~----------------------~~i~~~~--~~~~n~i~wsP~G 112 (194)
T PF08662_consen 57 KKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG----------------------KKIFSFG--TQPRNTISWSPDG 112 (194)
T ss_pred cCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcc----------------------cEeEeec--CCCceEEEECCCC
Confidence 34678999999999955433 345678999999964 4555553 4567899999999
Q ss_pred CCeEEEEcC---CCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEe------CCCcEEEEECCC
Q 018235 242 TGRLVTGDC---NSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS------VDGHIAIWDTRV 308 (359)
Q Consensus 242 ~~~l~sgs~---dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s------~Dg~I~iwD~r~ 308 (359)
+ +|++|+. .|.|.+||.++ .+.+ ..+ +...+..++|+|+|+ +|+++. .|..++||+...
T Consensus 113 ~-~l~~~g~~n~~G~l~~wd~~~-~~~i---~~~--~~~~~t~~~WsPdGr-~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 113 R-FLVLAGFGNLNGDLEFWDVRK-KKKI---STF--EHSDATDVEWSPDGR-YLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred C-EEEEEEccCCCcEEEEEECCC-CEEe---ecc--ccCcEEEEEEcCCCC-EEEEEEeccceeccccEEEEEecC
Confidence 9 8887754 46799999986 3333 222 234578999999999 666654 378899999864
No 196
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.37 E-value=1.3e-11 Score=114.20 Aligned_cols=119 Identities=18% Similarity=0.308 Sum_probs=99.6
Q ss_pred CCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCC
Q 018235 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (359)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~ 243 (359)
-.++||.++|+|++ ..+|+.+.||.++|||+.. ...+..++..-+...|++|||+++
T Consensus 289 ~~g~in~f~FS~DG-~~LA~VSqDGfLRvF~fdt---------------------~eLlg~mkSYFGGLLCvcWSPDGK- 345 (636)
T KOG2394|consen 289 GEGSINEFAFSPDG-KYLATVSQDGFLRIFDFDT---------------------QELLGVMKSYFGGLLCVCWSPDGK- 345 (636)
T ss_pred ccccccceeEcCCC-ceEEEEecCceEEEeeccH---------------------HHHHHHHHhhccceEEEEEcCCcc-
Confidence 45799999999999 8999999999999999988 345556666667889999999999
Q ss_pred eEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCC------------------------------------
Q 018235 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPT------------------------------------ 287 (359)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~------------------------------------ 287 (359)
+|++|+.|-.|.||.+.. .+.+ ..-++|++.|..|+|.|-
T Consensus 346 yIvtGGEDDLVtVwSf~e-rRVV---ARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~ 421 (636)
T KOG2394|consen 346 YIVTGGEDDLVTVWSFEE-RRVV---ARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEG 421 (636)
T ss_pred EEEecCCcceEEEEEecc-ceEE---EeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCC
Confidence 999999999999999976 4443 556789999999999831
Q ss_pred -----------CCCEEEEEeCCCcEEEEECCCC
Q 018235 288 -----------EPDVFASCSVDGHIAIWDTRVG 309 (359)
Q Consensus 288 -----------~~~~las~s~Dg~I~iwD~r~~ 309 (359)
-...|.+++.|-.++|||+...
T Consensus 422 ~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD 454 (636)
T KOG2394|consen 422 CPLSSFNRINSVTYRFGSVGQDTQLCLWDLTED 454 (636)
T ss_pred CcccccccccceEEEeecccccceEEEEecchh
Confidence 0235888899999999999764
No 197
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.37 E-value=5.2e-11 Score=105.53 Aligned_cols=160 Identities=19% Similarity=0.330 Sum_probs=113.3
Q ss_pred CCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCC
Q 018235 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (359)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~ 243 (359)
-+..|.+++|-|.+...+|.|+.. -|.||......+.......... ....+....|| ..|++|.|++++.
T Consensus 139 sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~~~s~-------~~~qvl~~pgh-~pVtsmqwn~dgt- 208 (445)
T KOG2139|consen 139 SQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIRMMST-------HHLQVLQDPGH-NPVTSMQWNEDGT- 208 (445)
T ss_pred hhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccccccccccc-------cchhheeCCCC-ceeeEEEEcCCCC-
Confidence 356899999999987788887764 5999998774433221111000 12334555666 4899999999998
Q ss_pred eEEEEcC-CCcEEEEecCCCCcceecCcccc-CCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCC
Q 018235 244 RLVTGDC-NSCIYLWEPASDATWNVDPNPFI-GHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNA 321 (359)
Q Consensus 244 ~l~sgs~-dg~I~lwd~~~~~~~~~~~~~~~-~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~ 321 (359)
.|++++- +..|.|||+.++... ++. ..-+.+.-+.|||++. +|.++..|+..++|..... ..........+
T Consensus 209 ~l~tAS~gsssi~iWdpdtg~~~-----pL~~~glgg~slLkwSPdgd-~lfaAt~davfrlw~e~q~-wt~erw~lgsg 281 (445)
T KOG2139|consen 209 ILVTASFGSSSIMIWDPDTGQKI-----PLIPKGLGGFSLLKWSPDGD-VLFAATCDAVFRLWQENQS-WTKERWILGSG 281 (445)
T ss_pred EEeecccCcceEEEEcCCCCCcc-----cccccCCCceeeEEEcCCCC-EEEEecccceeeeehhccc-ceecceeccCC
Confidence 8888876 457999999884332 222 2446788899999999 8888999999999965543 22222223344
Q ss_pred CEEEEEEcCCCCeEEEEee
Q 018235 322 DVNVISWNRCWLAVCWHLE 340 (359)
Q Consensus 322 ~V~~i~~s~~~~~l~~~~~ 340 (359)
.|...+|+|.|++|++.+.
T Consensus 282 rvqtacWspcGsfLLf~~s 300 (445)
T KOG2139|consen 282 RVQTACWSPCGSFLLFACS 300 (445)
T ss_pred ceeeeeecCCCCEEEEEEc
Confidence 8999999999999987764
No 198
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.35 E-value=2e-11 Score=102.87 Aligned_cols=168 Identities=17% Similarity=0.204 Sum_probs=123.2
Q ss_pred ceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEE
Q 018235 167 CVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLV 246 (359)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~ 246 (359)
.|.+-+++|.+ .+++.|+.+|+|.++.+....+...... ...++..+++|..++|.+.|.. . +|+
T Consensus 12 tvf~qa~sp~~-~~l~agn~~G~iav~sl~sl~s~sa~~~-----------gk~~iv~eqahdgpiy~~~f~d--~-~Ll 76 (325)
T KOG0649|consen 12 TVFAQAISPSK-QYLFAGNLFGDIAVLSLKSLDSGSAEPP-----------GKLKIVPEQAHDGPIYYLAFHD--D-FLL 76 (325)
T ss_pred HHHHHhhCCcc-eEEEEecCCCeEEEEEehhhhccccCCC-----------CCcceeeccccCCCeeeeeeeh--h-hee
Confidence 45666788988 7899999999999999987432221111 2456778899999999999983 3 788
Q ss_pred EEcCCCcEEEEecCCCCc-------ceecCccccC---CCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe
Q 018235 247 TGDCNSCIYLWEPASDAT-------WNVDPNPFIG---HSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF 316 (359)
Q Consensus 247 sgs~dg~I~lwd~~~~~~-------~~~~~~~~~~---h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~ 316 (359)
+|+ ||.|+-|..+...+ |.+ ..++.. --..|+++...|.+.++|.+| .|+.++-||+.++ +-...+
T Consensus 77 s~g-dG~V~gw~W~E~~es~~~K~lwe~-~~P~~~~~~evPeINam~ldP~enSi~~Ag-GD~~~y~~dlE~G-~i~r~~ 152 (325)
T KOG0649|consen 77 SGG-DGLVYGWEWNEEEESLATKRLWEV-KIPMQVDAVEVPEINAMWLDPSENSILFAG-GDGVIYQVDLEDG-RIQREY 152 (325)
T ss_pred ecc-CceEEEeeehhhhhhccchhhhhh-cCccccCcccCCccceeEeccCCCcEEEec-CCeEEEEEEecCC-EEEEEE
Confidence 887 69999998765322 110 011111 124678999999988566555 8999999999998 666778
Q ss_pred ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 317 KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 317 ~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
++|+.-|.++.-...+..++.+.. |+++|+||.++++
T Consensus 153 rGHtDYvH~vv~R~~~~qilsG~E----DGtvRvWd~kt~k 189 (325)
T KOG0649|consen 153 RGHTDYVHSVVGRNANGQILSGAE----DGTVRVWDTKTQK 189 (325)
T ss_pred cCCcceeeeeeecccCcceeecCC----CccEEEEeccccc
Confidence 999999999988444445555544 9999999999875
No 199
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.34 E-value=5.4e-10 Score=104.54 Aligned_cols=160 Identities=23% Similarity=0.374 Sum_probs=125.6
Q ss_pred CceeeEEE-eCCCCcEEEEEeC-CCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCC
Q 018235 166 GCVNRIRA-MTQNPHICASWAD-TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (359)
Q Consensus 166 ~~V~~i~~-~p~~~~~lat~s~-dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~ 243 (359)
..+..+.+ .+++..+++..+. ++.+.+|++.. .......+..|...+.+++|+|.+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--------------------~~~~~~~~~~~~~~v~~~~~~~~~~- 168 (466)
T COG2319 110 SSVSKLALSSPDGNSILLASSSLDGTVKLWDLST--------------------PGKLIRTLEGHSESVTSLAFSPDGK- 168 (466)
T ss_pred CceeeEEEECCCcceEEeccCCCCccEEEEEecC--------------------CCeEEEEEecCcccEEEEEECCCCC-
Confidence 47777777 7777435555444 99999999986 1356678889999999999999998
Q ss_pred eEEEEcC-CCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceE-EeecCCC
Q 018235 244 RLVTGDC-NSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALT-SFKAHNA 321 (359)
Q Consensus 244 ~l~sgs~-dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~-~~~~h~~ 321 (359)
.+++++. ++.+++|++.. .... ..+.+|...|.++.|+|.+..++++++.|+.|++||.+.+ ..+. .+..|..
T Consensus 169 ~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~ 243 (466)
T COG2319 169 LLASGSSLDGTIKLWDLRT-GKPL---STLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG-KLLRSTLSGHSD 243 (466)
T ss_pred EEEecCCCCCceEEEEcCC-CceE---EeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCC-cEEeeecCCCCc
Confidence 8888885 99999999986 3333 5667799999999999998746666699999999998865 5555 5778887
Q ss_pred CEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 322 DVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 322 ~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
.+ ...|++++.+++.... ++.+++|+....
T Consensus 244 ~~-~~~~~~~~~~~~~~~~----d~~~~~~~~~~~ 273 (466)
T COG2319 244 SV-VSSFSPDGSLLASGSS----DGTIRLWDLRSS 273 (466)
T ss_pred ce-eEeECCCCCEEEEecC----CCcEEEeeecCC
Confidence 75 4489999977764444 899999998754
No 200
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.34 E-value=6.5e-10 Score=97.13 Aligned_cols=160 Identities=16% Similarity=0.200 Sum_probs=112.5
Q ss_pred cCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCC-ceEEEEeCCCC
Q 018235 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKD-EGYAIDWNPIT 241 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~sp~~ 241 (359)
...++|..|++.++. +++. -.+.|+||.+...+ +.++.+..... .+ ..+.+|..
T Consensus 92 ~f~~~I~~V~l~r~r--iVvv--l~~~I~VytF~~n~--------------------k~l~~~et~~NPkG-lC~~~~~~ 146 (346)
T KOG2111|consen 92 SFNSEIKAVKLRRDR--IVVV--LENKIYVYTFPDNP--------------------KLLHVIETRSNPKG-LCSLCPTS 146 (346)
T ss_pred EeccceeeEEEcCCe--EEEE--ecCeEEEEEcCCCh--------------------hheeeeecccCCCc-eEeecCCC
Confidence 457899999999865 3332 35789999998643 22333322221 11 22223322
Q ss_pred CC-eEEE-EcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCc-EEEEECCCCCCceEEee-
Q 018235 242 TG-RLVT-GDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGH-IAIWDTRVGKSALTSFK- 317 (359)
Q Consensus 242 ~~-~l~s-gs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~-I~iwD~r~~~~~~~~~~- 317 (359)
.. +||- |-.-|.|.|-|+... ... +...+.+|.+.|.|++.+-+|. ++||+|..|+ |||||.+++ ..+..+.
T Consensus 147 ~k~~LafPg~k~GqvQi~dL~~~-~~~-~p~~I~AH~s~Iacv~Ln~~Gt-~vATaStkGTLIRIFdt~~g-~~l~E~RR 222 (346)
T KOG2111|consen 147 NKSLLAFPGFKTGQVQIVDLAST-KPN-APSIINAHDSDIACVALNLQGT-LVATASTKGTLIRIFDTEDG-TLLQELRR 222 (346)
T ss_pred CceEEEcCCCccceEEEEEhhhc-CcC-CceEEEcccCceeEEEEcCCcc-EEEEeccCcEEEEEEEcCCC-cEeeeeec
Confidence 21 3333 455689999998762 221 1245788999999999999999 9999999999 899999998 7777773
Q ss_pred -cCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 318 -AHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 318 -~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
.-.+.|.||+|||+..+|+.... .+++.|+..+.
T Consensus 223 G~d~A~iy~iaFSp~~s~LavsSd----KgTlHiF~l~~ 257 (346)
T KOG2111|consen 223 GVDRADIYCIAFSPNSSWLAVSSD----KGTLHIFSLRD 257 (346)
T ss_pred CCchheEEEEEeCCCccEEEEEcC----CCeEEEEEeec
Confidence 33567999999999999999876 67788876554
No 201
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.34 E-value=4.9e-11 Score=112.96 Aligned_cols=188 Identities=12% Similarity=0.069 Sum_probs=120.7
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccc-cc-------------cCCCCC--C-
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESET-IV-------------GQGAPQ--V- 216 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~-~~-------------~~~~~~--~- 216 (359)
+..+...+.+|+..|++++|+.+| ..+|+|+.|..|.+|.-.-... +...+. .. +..-+. .
T Consensus 42 dG~llqtLKgHKDtVycVAys~dG-krFASG~aDK~VI~W~~klEG~-LkYSH~D~IQCMsFNP~~h~LasCsLsdFglW 119 (1081)
T KOG1538|consen 42 DGTLLQPLKGHKDTVYCVAYAKDG-KRFASGSADKSVIIWTSKLEGI-LKYSHNDAIQCMSFNPITHQLASCSLSDFGLW 119 (1081)
T ss_pred CcccccccccccceEEEEEEccCC-ceeccCCCceeEEEecccccce-eeeccCCeeeEeecCchHHHhhhcchhhcccc
Confidence 344557788999999999999999 8999999999999998643211 110000 00 000000 0
Q ss_pred -CCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeE---------------
Q 018235 217 -SNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVE--------------- 280 (359)
Q Consensus 217 -~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~--------------- 280 (359)
...+.+... .....+.+.+|..+|. +|+-|-.+|+|.|-+-.. .....+..-.|..++|.
T Consensus 120 S~~qK~V~K~-kss~R~~~CsWtnDGq-ylalG~~nGTIsiRNk~g--Eek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di 195 (1081)
T KOG1538|consen 120 SPEQKSVSKH-KSSSRIICCSWTNDGQ-YLALGMFNGTISIRNKNG--EEKVKIERPGGSNSPIWSICWNPSSGEGRNDI 195 (1081)
T ss_pred ChhhhhHHhh-hhheeEEEeeecCCCc-EEEEeccCceEEeecCCC--CcceEEeCCCCCCCCceEEEecCCCCCCccce
Confidence 001111111 1234688999999998 999999999999875432 11111111122333333
Q ss_pred -------------------------------EEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEc
Q 018235 281 -------------------------------DLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWN 329 (359)
Q Consensus 281 -------------------------------~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s 329 (359)
|+++.|+|. ++..|+.|+.+++|- |.+ -.+-++......|+.+...
T Consensus 196 ~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGE-y~LiGGsdk~L~~fT-R~G-vrLGTvg~~D~WIWtV~~~ 272 (1081)
T KOG1538|consen 196 LAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGE-YILLGGSDKQLSLFT-RDG-VRLGTVGEQDSWIWTVQAK 272 (1081)
T ss_pred EEEEeccceeEEEEecceeecccccCCCCchhheeccCCc-EEEEccCCCceEEEe-ecC-eEEeeccccceeEEEEEEc
Confidence 445566667 677777788888773 444 4455555567899999999
Q ss_pred CCCCeEEEEeeecccceEEEEEeCc
Q 018235 330 RCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 330 ~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
|+++.++.++. |++|..++.-
T Consensus 273 PNsQ~v~~GCq----DGTiACyNl~ 293 (1081)
T KOG1538|consen 273 PNSQYVVVGCQ----DGTIACYNLI 293 (1081)
T ss_pred cCCceEEEEEc----cCeeehhhhH
Confidence 99999999998 8888877653
No 202
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=1.1e-10 Score=112.10 Aligned_cols=161 Identities=12% Similarity=0.125 Sum_probs=105.6
Q ss_pred EEecCCCceeeEEEeCCCCcEEEEEeC---CCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEE
Q 018235 160 RKVAHQGCVNRIRAMTQNPHICASWAD---TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAID 236 (359)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat~s~---dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 236 (359)
.+..|.+.+...+|+|++. .+|..+. +..|++||+... ....+..+.+|. .+++
T Consensus 198 ~lt~~~~~v~~p~wSPDG~-~la~~s~~~~~~~i~i~dl~tg-------------------~~~~l~~~~g~~---~~~~ 254 (429)
T PRK01742 198 IVNRSSQPLMSPAWSPDGS-KLAYVSFENKKSQLVVHDLRSG-------------------ARKVVASFRGHN---GAPA 254 (429)
T ss_pred EeccCCCccccceEcCCCC-EEEEEEecCCCcEEEEEeCCCC-------------------ceEEEecCCCcc---Ccee
Confidence 3456888999999999994 4454443 247999998761 012233344443 3689
Q ss_pred eCCCCCCeEEEE-cCCCcEEEE--ecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCce
Q 018235 237 WNPITTGRLVTG-DCNSCIYLW--EPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL 313 (359)
Q Consensus 237 ~sp~~~~~l~sg-s~dg~I~lw--d~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~ 313 (359)
|+|++. .|+.+ +.+|.+.|| |+.. +. . ..+..+...+..++|+|++..++++...+|..+||++.......
T Consensus 255 wSPDG~-~La~~~~~~g~~~Iy~~d~~~-~~-~---~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~ 328 (429)
T PRK01742 255 FSPDGS-RLAFASSKDGVLNIYVMGANG-GT-P---SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA 328 (429)
T ss_pred ECCCCC-EEEEEEecCCcEEEEEEECCC-CC-e---EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence 999998 66654 568876665 5543 33 2 34566777788999999999445555567889999876542223
Q ss_pred EEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 314 TSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 314 ~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
..+ .+.. .+++|+|+|+.+++... +. +.+||..+|.
T Consensus 329 ~~l-~~~~--~~~~~SpDG~~ia~~~~----~~-i~~~Dl~~g~ 364 (429)
T PRK01742 329 SLV-GGRG--YSAQISADGKTLVMING----DN-VVKQDLTSGS 364 (429)
T ss_pred EEe-cCCC--CCccCCCCCCEEEEEcC----CC-EEEEECCCCC
Confidence 333 3443 45789999999887654 44 4448877764
No 203
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=1.5e-10 Score=111.25 Aligned_cols=143 Identities=10% Similarity=0.070 Sum_probs=93.1
Q ss_pred ceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEE
Q 018235 167 CVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLV 246 (359)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~ 246 (359)
....++|+|++..++++.+.+|.+.||.+... ......+..+...+.+..|+|++..+++
T Consensus 249 ~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~--------------------~~~~~~lt~~~~~~~~~~wSpDG~~i~f 308 (429)
T PRK01742 249 HNGAPAFSPDGSRLAFASSKDGVLNIYVMGAN--------------------GGTPSQLTSGAGNNTEPSWSPDGQSILF 308 (429)
T ss_pred ccCceeECCCCCEEEEEEecCCcEEEEEEECC--------------------CCCeEeeccCCCCcCCEEECCCCCEEEE
Confidence 34468999999555555567888777754431 1223455566667889999999983444
Q ss_pred EEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEE
Q 018235 247 TGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVI 326 (359)
Q Consensus 247 sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i 326 (359)
+++.+|...||++...+... ..+ .+.. ..++|+|++. .|+..+.++ +.+||+.++ ... .+..+ .....+
T Consensus 309 ~s~~~g~~~I~~~~~~~~~~---~~l-~~~~--~~~~~SpDG~-~ia~~~~~~-i~~~Dl~~g-~~~-~lt~~-~~~~~~ 377 (429)
T PRK01742 309 TSDRSGSPQVYRMSASGGGA---SLV-GGRG--YSAQISADGK-TLVMINGDN-VVKQDLTSG-STE-VLSST-FLDESP 377 (429)
T ss_pred EECCCCCceEEEEECCCCCe---EEe-cCCC--CCccCCCCCC-EEEEEcCCC-EEEEECCCC-CeE-EecCC-CCCCCc
Confidence 55567888999876533322 112 3333 4578999999 676666665 556999886 322 22212 134567
Q ss_pred EEcCCCCeEEEEee
Q 018235 327 SWNRCWLAVCWHLE 340 (359)
Q Consensus 327 ~~s~~~~~l~~~~~ 340 (359)
+|+|+|..+++...
T Consensus 378 ~~sPdG~~i~~~s~ 391 (429)
T PRK01742 378 SISPNGIMIIYSST 391 (429)
T ss_pred eECCCCCEEEEEEc
Confidence 89999999998865
No 204
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.31 E-value=1.1e-10 Score=103.75 Aligned_cols=118 Identities=19% Similarity=0.216 Sum_probs=94.7
Q ss_pred cCCCceeeEEEeCCCCcEEEE-E-eCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCC
Q 018235 163 AHQGCVNRIRAMTQNPHICAS-W-ADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI 240 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat-~-s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~ 240 (359)
+|...+.++.+++.+ .++|- + ...|.|.|||... .+++..+..|.+++-+|+||++
T Consensus 127 ~n~~gl~AlS~n~~n-~ylAyp~s~t~GdV~l~d~~n---------------------l~~v~~I~aH~~~lAalafs~~ 184 (391)
T KOG2110|consen 127 PNPKGLCALSPNNAN-CYLAYPGSTTSGDVVLFDTIN---------------------LQPVNTINAHKGPLAALAFSPD 184 (391)
T ss_pred CCccceEeeccCCCC-ceEEecCCCCCceEEEEEccc---------------------ceeeeEEEecCCceeEEEECCC
Confidence 456667666666666 34443 2 3469999999987 6888999999999999999999
Q ss_pred CCCeEEEEcCCCc-EEEEecCCCCcceecCccccCC--CCCeEEEEecCCCCCEEEEEeCCCcEEEEECCC
Q 018235 241 TTGRLVTGDCNSC-IYLWEPASDATWNVDPNPFIGH--SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV 308 (359)
Q Consensus 241 ~~~~l~sgs~dg~-I~lwd~~~~~~~~~~~~~~~~h--~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~ 308 (359)
|. +|||++..|+ |+++.+.. ++.+ ..|... ...|.+++|+|+++ +|++.|..++|+||-+..
T Consensus 185 G~-llATASeKGTVIRVf~v~~-G~kl---~eFRRG~~~~~IySL~Fs~ds~-~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 185 GT-LLATASEKGTVIRVFSVPE-GQKL---YEFRRGTYPVSIYSLSFSPDSQ-FLAASSNTETVHIFKLEK 249 (391)
T ss_pred CC-EEEEeccCceEEEEEEcCC-ccEe---eeeeCCceeeEEEEEEECCCCC-eEEEecCCCeEEEEEecc
Confidence 99 9999999997 69999987 4444 334322 35789999999999 999999999999998764
No 205
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.30 E-value=8.4e-12 Score=120.70 Aligned_cols=165 Identities=21% Similarity=0.362 Sum_probs=127.9
Q ss_pred eEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEE
Q 018235 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAI 235 (359)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 235 (359)
.+.....+|.+.|+.++.+..+ .++|+++.|..|++|.+.. +.|+..+.||++.|++|
T Consensus 223 ~~lAs~rGhs~ditdlavs~~n-~~iaaaS~D~vIrvWrl~~---------------------~~pvsvLrghtgavtai 280 (1113)
T KOG0644|consen 223 RCLASCRGHSGDITDLAVSSNN-TMIAAASNDKVIRVWRLPD---------------------GAPVSVLRGHTGAVTAI 280 (1113)
T ss_pred hhhccCCCCccccchhccchhh-hhhhhcccCceEEEEecCC---------------------CchHHHHhccccceeee
Confidence 3446677999999999998877 8999999999999999998 78999999999999999
Q ss_pred EeCCCCCCeEEEEcCCCcEEEEecCC-CC---------------------------------------------------
Q 018235 236 DWNPITTGRLVTGDCNSCIYLWEPAS-DA--------------------------------------------------- 263 (359)
Q Consensus 236 ~~sp~~~~~l~sgs~dg~I~lwd~~~-~~--------------------------------------------------- 263 (359)
+|+|.. +.+.||++++||.+- ..
T Consensus 281 afsP~~-----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~l 355 (1113)
T KOG0644|consen 281 AFSPRA-----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLL 355 (1113)
T ss_pred ccCccc-----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccce
Confidence 999964 567799999999871 00
Q ss_pred -----c------------------cee----cCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe
Q 018235 264 -----T------------------WNV----DPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF 316 (359)
Q Consensus 264 -----~------------------~~~----~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~ 316 (359)
. |.. ..+.+.+|...+..+.+||.++.+..+++.||+..|||+-.+ .++...
T Consensus 356 if~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg-~pik~y 434 (1113)
T KOG0644|consen 356 IFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEG-IPIKHY 434 (1113)
T ss_pred EEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccC-Ccceee
Confidence 0 000 012223677888999999999977789999999999999988 566554
Q ss_pred -ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeC
Q 018235 317 -KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDC 353 (359)
Q Consensus 317 -~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~ 353 (359)
.+|.. +..-+|+++|..++...+ .+.+.|...
T Consensus 435 ~~gh~k-l~d~kFSqdgts~~lsd~----hgql~i~g~ 467 (1113)
T KOG0644|consen 435 FIGHGK-LVDGKFSQDGTSIALSDD----HGQLYILGT 467 (1113)
T ss_pred ecccce-eeccccCCCCceEecCCC----CCceEEecc
Confidence 45544 556689999987776654 455666543
No 206
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.29 E-value=8.2e-11 Score=109.83 Aligned_cols=192 Identities=16% Similarity=0.219 Sum_probs=134.1
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccc-----------------------------
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIV----------------------------- 209 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~----------------------------- 209 (359)
++-+.|+...++|..+|+|..++|||..--.|++||+......+..+....
T Consensus 45 iQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~ 124 (703)
T KOG2321|consen 45 IQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY 124 (703)
T ss_pred HHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhc
Confidence 555689999999999999999999999999999999977433222111000
Q ss_pred ---------cCCCC-----------------CC-----CCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEe
Q 018235 210 ---------GQGAP-----------------QV-----SNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWE 258 (359)
Q Consensus 210 ---------~~~~~-----------------~~-----~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd 258 (359)
.++.+ .+ .++..+..|....++++++..++... +|++|+.+|.|-.||
T Consensus 125 G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hg-Lla~Gt~~g~VEfwD 203 (703)
T KOG2321|consen 125 GRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHG-LLACGTEDGVVEFWD 203 (703)
T ss_pred CeeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccc-eEEecccCceEEEec
Confidence 00000 00 23344444555557889999999886 999999999999999
Q ss_pred cCCCCcce-------ecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe-ecCCCCEEEEEEcC
Q 018235 259 PASDATWN-------VDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF-KAHNADVNVISWNR 330 (359)
Q Consensus 259 ~~~~~~~~-------~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~-~~h~~~V~~i~~s~ 330 (359)
++...... +...+.......|+++.|+.+|- -++.|..+|.|.|||+|+. .++..- ....-+|..+.|.+
T Consensus 204 pR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL-~~aVGts~G~v~iyDLRa~-~pl~~kdh~~e~pi~~l~~~~ 281 (703)
T KOG2321|consen 204 PRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGL-HVAVGTSTGSVLIYDLRAS-KPLLVKDHGYELPIKKLDWQD 281 (703)
T ss_pred chhhhhheeeecccccCCCccccccCcceEEEecCCce-eEEeeccCCcEEEEEcccC-CceeecccCCccceeeecccc
Confidence 98743211 11122222334699999999887 8999999999999999997 565433 33456899999987
Q ss_pred CCC-eEEEEeeecccceEEEEEeCcCCc
Q 018235 331 CWL-AVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 331 ~~~-~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
.+. -.+.++. ...++|||..+|.
T Consensus 282 ~~~q~~v~S~D----k~~~kiWd~~~Gk 305 (703)
T KOG2321|consen 282 TDQQNKVVSMD----KRILKIWDECTGK 305 (703)
T ss_pred cCCCceEEecc----hHHhhhcccccCC
Confidence 632 2333333 5679999988775
No 207
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.29 E-value=2.9e-12 Score=123.79 Aligned_cols=118 Identities=21% Similarity=0.347 Sum_probs=106.3
Q ss_pred EEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEe
Q 018235 158 QLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (359)
Q Consensus 158 ~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (359)
+.++.+|...|.|+.|...| ..|+||++|..|+||.... ..++.++.||.+.+..++.
T Consensus 183 ikrLlgH~naVyca~fDrtg-~~Iitgsdd~lvKiwS~et---------------------~~~lAs~rGhs~ditdlav 240 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTG-RYIITGSDDRLVKIWSMET---------------------ARCLASCRGHSGDITDLAV 240 (1113)
T ss_pred HHHHHhhhhheeeeeecccc-ceEeecCccceeeeeeccc---------------------hhhhccCCCCccccchhcc
Confidence 34566899999999999999 8999999999999999776 6788899999999999999
Q ss_pred CCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECC
Q 018235 238 NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTR 307 (359)
Q Consensus 238 sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r 307 (359)
+..+. +++++++|..|++|-+.. +.++ ..+.+|++.|++|+|+|.- +.+.||+++|||.|
T Consensus 241 s~~n~-~iaaaS~D~vIrvWrl~~-~~pv---svLrghtgavtaiafsP~~-----sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 241 SSNNT-MIAAASNDKVIRVWRLPD-GAPV---SVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDAR 300 (1113)
T ss_pred chhhh-hhhhcccCceEEEEecCC-CchH---HHHhccccceeeeccCccc-----cCCCCCceEecccc
Confidence 99887 999999999999999987 5554 6789999999999999964 67899999999999
No 208
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.26 E-value=9.6e-10 Score=105.84 Aligned_cols=166 Identities=13% Similarity=0.047 Sum_probs=107.3
Q ss_pred EecCCCceeeEEEeCCCCcEEEEEeC---CCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEe
Q 018235 161 KVAHQGCVNRIRAMTQNPHICASWAD---TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (359)
Q Consensus 161 ~~~H~~~V~~i~~~p~~~~~lat~s~---dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (359)
+..|...+...+|+|++. .|+..+. ...|++||+.. ... ..+..+.....++.|
T Consensus 199 lt~~~~~v~~p~wSpDg~-~la~~s~~~~~~~l~~~dl~~---------------------g~~-~~l~~~~g~~~~~~~ 255 (433)
T PRK04922 199 ILRSAEPILSPAWSPDGK-KLAYVSFERGRSAIYVQDLAT---------------------GQR-ELVASFRGINGAPSF 255 (433)
T ss_pred eecCCCccccccCCCCCC-EEEEEecCCCCcEEEEEECCC---------------------CCE-EEeccCCCCccCceE
Confidence 346778899999999994 4444442 34699999876 222 222233334457899
Q ss_pred CCCCCCeEEEEcCCC--cEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEe-CCCc--EEEEECCCCCCc
Q 018235 238 NPITTGRLVTGDCNS--CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS-VDGH--IAIWDTRVGKSA 312 (359)
Q Consensus 238 sp~~~~~l~sgs~dg--~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s-~Dg~--I~iwD~r~~~~~ 312 (359)
+|++..++++.+.+| .|++||+.. +.. ..+..+......++|+|++. .|+.++ .+|. |.++|+.++ .
T Consensus 256 SpDG~~l~~~~s~~g~~~Iy~~d~~~-g~~----~~lt~~~~~~~~~~~spDG~-~l~f~sd~~g~~~iy~~dl~~g-~- 327 (433)
T PRK04922 256 SPDGRRLALTLSRDGNPEIYVMDLGS-RQL----TRLTNHFGIDTEPTWAPDGK-SIYFTSDRGGRPQIYRVAASGG-S- 327 (433)
T ss_pred CCCCCEEEEEEeCCCCceEEEEECCC-CCe----EECccCCCCccceEECCCCC-EEEEEECCCCCceEEEEECCCC-C-
Confidence 999984445656565 589999876 332 33555555667889999999 555554 4555 666676654 2
Q ss_pred eEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 313 LTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 313 ~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
...+..+......++|+|+|+.+++.... .....|.+|+..++..
T Consensus 328 ~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~-~~~~~I~v~d~~~g~~ 372 (433)
T PRK04922 328 AERLTFQGNYNARASVSPDGKKIAMVHGS-GGQYRIAVMDLSTGSV 372 (433)
T ss_pred eEEeecCCCCccCEEECCCCCEEEEEECC-CCceeEEEEECCCCCe
Confidence 33333333445578999999999886542 2235789999877653
No 209
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.26 E-value=2.9e-10 Score=98.32 Aligned_cols=177 Identities=15% Similarity=0.107 Sum_probs=128.2
Q ss_pred CCeEEE--EEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEE-ecCCCC
Q 018235 154 TPILQL--RKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVK-FGGHKD 230 (359)
Q Consensus 154 ~~~~~~--~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~ 230 (359)
.+.++. ...+|.-+++.+.|+-..++++.||++||.+..||++.+ ...++. .+-|..
T Consensus 152 ~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p--------------------~~~i~~n~kvH~~ 211 (339)
T KOG0280|consen 152 EMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIP--------------------KTFIWHNSKVHTS 211 (339)
T ss_pred eeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCC--------------------cceeeecceeeec
Confidence 445544 678999999999999999999999999999999999952 333333 456888
Q ss_pred ceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCC
Q 018235 231 EGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK 310 (359)
Q Consensus 231 ~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~ 310 (359)
.|.+|.-||..+.+++||+.|-.|++||.|+-++++.+ ..-.+.|+.+.++|...+.+..++.-.-.+|.+.....
T Consensus 212 GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~----~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~ 287 (339)
T KOG0280|consen 212 GVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFK----AKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKV 287 (339)
T ss_pred ceEEEecCCCCCceEEEeccccceeeeehhcccCcccc----CccccceEEEEecchhhhHHHHHHHhcCceEEEecccc
Confidence 99999999887779999999999999999986666521 12348999999999865544444444446777776652
Q ss_pred C----ceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceE-EEEEeCcCCc
Q 018235 311 S----ALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFL-FMILDCSRGE 357 (359)
Q Consensus 311 ~----~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~-i~iwd~~~g~ 357 (359)
. .....+.|.+-+..-.|+....+++... ..|+. ..+|-.-++.
T Consensus 288 ~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCs---FYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 288 LEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCS---FYDKKIRQLWLHITGE 336 (339)
T ss_pred cchheeeeccccccceeeccccccccceeeeee---ccccceeeeeeeccCC
Confidence 2 2223367888888888866555555432 23555 4588766554
No 210
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.24 E-value=7.1e-11 Score=109.42 Aligned_cols=143 Identities=18% Similarity=0.288 Sum_probs=112.9
Q ss_pred cEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEe
Q 018235 179 HICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWE 258 (359)
Q Consensus 179 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd 258 (359)
..++.++.||.+.|.+-.. +.-.....|.+.+.+-.|+|+|. -|+|++.||.|++|.
T Consensus 76 d~~~i~s~DGkf~il~k~~----------------------rVE~sv~AH~~A~~~gRW~~dGt-gLlt~GEDG~iKiWS 132 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSA----------------------RVERSISAHAAAISSGRWSPDGA-GLLTAGEDGVIKIWS 132 (737)
T ss_pred ceEEEEcCCceEEEecccc----------------------hhhhhhhhhhhhhhhcccCCCCc-eeeeecCCceEEEEe
Confidence 5677789999999887544 44556788999999999999999 788888999999998
Q ss_pred cCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEE
Q 018235 259 PASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWH 338 (359)
Q Consensus 259 ~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~ 338 (359)
- + +-.. .++.....+|+|++|.|+..+++.+.+. .+.|=-+... ..+...++|.+-|.+++||+.+.+++.+
T Consensus 133 r-s-GMLR---Stl~Q~~~~v~c~~W~p~S~~vl~c~g~--h~~IKpL~~n-~k~i~WkAHDGiiL~~~W~~~s~lI~sg 204 (737)
T KOG1524|consen 133 R-S-GMLR---STVVQNEESIRCARWAPNSNSIVFCQGG--HISIKPLAAN-SKIIRWRAHDGLVLSLSWSTQSNIIASG 204 (737)
T ss_pred c-c-chHH---HHHhhcCceeEEEEECCCCCceEEecCC--eEEEeecccc-cceeEEeccCcEEEEeecCccccceeec
Confidence 4 4 3322 3344566899999999999877766553 4555555554 5677889999999999999999999887
Q ss_pred eeecccceEEEEEeCcCC
Q 018235 339 LEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 339 ~~~~~~d~~i~iwd~~~g 356 (359)
.. |..+++||....
T Consensus 205 GE----D~kfKvWD~~G~ 218 (737)
T KOG1524|consen 205 GE----DFRFKIWDAQGA 218 (737)
T ss_pred CC----ceeEEeecccCc
Confidence 66 999999997643
No 211
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.23 E-value=2e-10 Score=99.32 Aligned_cols=142 Identities=17% Similarity=0.115 Sum_probs=111.5
Q ss_pred eeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEE
Q 018235 169 NRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTG 248 (359)
Q Consensus 169 ~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sg 248 (359)
-++.|++.+ .-++++-.+|.+.+-+.... ..+.+..++.|.-+.+-..|+...+.++.+|
T Consensus 125 lslD~~~~~-~~i~vs~s~G~~~~v~~t~~-------------------~le~vq~wk~He~E~Wta~f~~~~pnlvytG 184 (339)
T KOG0280|consen 125 LSLDISTSG-TKIFVSDSRGSISGVYETEM-------------------VLEKVQTWKVHEFEAWTAKFSDKEPNLVYTG 184 (339)
T ss_pred eEEEeeccC-ceEEEEcCCCcEEEEeccee-------------------eeeecccccccceeeeeeecccCCCceEEec
Confidence 355566666 45666677888875554431 1344567899999999999998888899999
Q ss_pred cCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEE
Q 018235 249 DCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISW 328 (359)
Q Consensus 249 s~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~ 328 (359)
+.|+.+..||+|.+++++ .+....|...|.+|.-+|..++.+++|+.|-.|++||+|+..+|+..-. -.+.|+.|.+
T Consensus 185 gDD~~l~~~D~R~p~~~i--~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~ 261 (339)
T KOG0280|consen 185 GDDGSLSCWDIRIPKTFI--WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKH 261 (339)
T ss_pred CCCceEEEEEecCCccee--eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEe
Confidence 999999999999766655 2335569999999999998888999999999999999997757765543 3478999999
Q ss_pred cCCCC
Q 018235 329 NRCWL 333 (359)
Q Consensus 329 s~~~~ 333 (359)
+|.-.
T Consensus 262 ~p~~~ 266 (339)
T KOG0280|consen 262 HPEIF 266 (339)
T ss_pred cchhh
Confidence 99543
No 212
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.23 E-value=2.6e-09 Score=102.56 Aligned_cols=162 Identities=10% Similarity=0.085 Sum_probs=100.8
Q ss_pred cCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCC
Q 018235 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~ 242 (359)
...+.+...+|+|++..++++.+.+|...||.+... ......+..+........|+|+++
T Consensus 237 ~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~--------------------~~~~~~lt~~~~~~~~~~wSpDG~ 296 (427)
T PRK02889 237 NFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNAD--------------------GSGLRRLTQSSGIDTEPFFSPDGR 296 (427)
T ss_pred cCCCCccceEECCCCCEEEEEEccCCCceEEEEECC--------------------CCCcEECCCCCCCCcCeEEcCCCC
Confidence 345667789999999666667788888888876541 222344544554556788999998
Q ss_pred CeEE-EEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCC---cEEEEECCCCCCceEEeec
Q 018235 243 GRLV-TGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG---HIAIWDTRVGKSALTSFKA 318 (359)
Q Consensus 243 ~~l~-sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg---~I~iwD~r~~~~~~~~~~~ 318 (359)
.|+ ++..+|...||.+...+... ..+..+.......+|+|++. .|+..+.++ .|.+||+.++ . ...+..
T Consensus 297 -~l~f~s~~~g~~~Iy~~~~~~g~~---~~lt~~g~~~~~~~~SpDG~-~Ia~~s~~~g~~~I~v~d~~~g-~-~~~lt~ 369 (427)
T PRK02889 297 -SIYFTSDRGGAPQIYRMPASGGAA---QRVTFTGSYNTSPRISPDGK-LLAYISRVGGAFKLYVQDLATG-Q-VTALTD 369 (427)
T ss_pred -EEEEEecCCCCcEEEEEECCCCce---EEEecCCCCcCceEECCCCC-EEEEEEccCCcEEEEEEECCCC-C-eEEccC
Confidence 555 44445677777654322211 11211222334678999999 666655443 5999999876 3 233332
Q ss_pred CCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeC
Q 018235 319 HNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDC 353 (359)
Q Consensus 319 h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~ 353 (359)
......++|+|+|+.|++.....+ ...+.+.+.
T Consensus 370 -~~~~~~p~~spdg~~l~~~~~~~g-~~~l~~~~~ 402 (427)
T PRK02889 370 -TTRDESPSFAPNGRYILYATQQGG-RSVLAAVSS 402 (427)
T ss_pred -CCCccCceECCCCCEEEEEEecCC-CEEEEEEEC
Confidence 233467899999999988765322 233444444
No 213
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.22 E-value=3.8e-09 Score=101.45 Aligned_cols=165 Identities=11% Similarity=0.053 Sum_probs=105.6
Q ss_pred ecCCCceeeEEEeCCCCcEEEEEe--CCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCC
Q 018235 162 VAHQGCVNRIRAMTQNPHICASWA--DTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (359)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s--~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp 239 (359)
..+.+.+...+|+|+|..++.+.. ....|++|++... ....+..+.++ ..++.|||
T Consensus 195 t~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G-------------------~~~~l~~~~~~---~~~~~~SP 252 (429)
T PRK03629 195 HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG-------------------AVRQVASFPRH---NGAPAFSP 252 (429)
T ss_pred ecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCC-------------------CeEEccCCCCC---cCCeEECC
Confidence 356778999999999954444432 3457889998651 01222223333 34689999
Q ss_pred CCCCeEE-EEcCCC--cEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeC-CCcEEEE--ECCCCCCce
Q 018235 240 ITTGRLV-TGDCNS--CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSV-DGHIAIW--DTRVGKSAL 313 (359)
Q Consensus 240 ~~~~~l~-sgs~dg--~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~-Dg~I~iw--D~r~~~~~~ 313 (359)
++. .|+ +.+.+| .|++||+.+ +.. ..+..+...+...+|+|++. .|+..+. ++...|| |+.++ ..
T Consensus 253 DG~-~La~~~~~~g~~~I~~~d~~t-g~~----~~lt~~~~~~~~~~wSPDG~-~I~f~s~~~g~~~Iy~~d~~~g--~~ 323 (429)
T PRK03629 253 DGS-KLAFALSKTGSLNLYVMDLAS-GQI----RQVTDGRSNNTEPTWFPDSQ-NLAYTSDQAGRPQVYKVNINGG--AP 323 (429)
T ss_pred CCC-EEEEEEcCCCCcEEEEEECCC-CCE----EEccCCCCCcCceEECCCCC-EEEEEeCCCCCceEEEEECCCC--Ce
Confidence 998 555 445555 488899876 332 23444455678899999999 5555554 4555555 66554 33
Q ss_pred EEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 314 TSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 314 ~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
..+..+........|+|+|+.+++.... .....|.+|+..++.+
T Consensus 324 ~~lt~~~~~~~~~~~SpDG~~Ia~~~~~-~g~~~I~~~dl~~g~~ 367 (429)
T PRK03629 324 QRITWEGSQNQDADVSSDGKFMVMVSSN-GGQQHIAKQDLATGGV 367 (429)
T ss_pred EEeecCCCCccCEEECCCCCEEEEEEcc-CCCceEEEEECCCCCe
Confidence 4444444456678999999998876542 2235688888877653
No 214
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.22 E-value=1.1e-10 Score=99.38 Aligned_cols=124 Identities=16% Similarity=0.177 Sum_probs=96.9
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
.....|.++|.++.|.+.- ..=++|+.+..+..|.+......+ +......+ -...+..+..-
T Consensus 199 ~~~ash~qpvlsldyas~~-~rGisgga~dkl~~~Sl~~s~gsl---------------q~~~e~~l--knpGv~gvrIR 260 (323)
T KOG0322|consen 199 SPNASHKQPVLSLDYASSC-DRGISGGADDKLVMYSLNHSTGSL---------------QIRKEITL--KNPGVSGVRIR 260 (323)
T ss_pred cchhhccCcceeeeechhh-cCCcCCCccccceeeeeccccCcc---------------cccceEEe--cCCCccceEEc
Confidence 4455799999999998765 445677888889999988732211 01111122 23367789999
Q ss_pred CCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEEC
Q 018235 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDT 306 (359)
Q Consensus 239 p~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~ 306 (359)
|++. .|||++-|++|++|..++ .+++ ..+.-|.+.|++++|+|+.. ++|++|.|++|.+|++
T Consensus 261 pD~K-IlATAGWD~RiRVyswrt-l~pL---AVLkyHsagvn~vAfspd~~-lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 261 PDGK-ILATAGWDHRIRVYSWRT-LNPL---AVLKYHSAGVNAVAFSPDCE-LMAAASKDARISLWKL 322 (323)
T ss_pred cCCc-EEeecccCCcEEEEEecc-CCch---hhhhhhhcceeEEEeCCCCc-hhhhccCCceEEeeec
Confidence 9999 999999999999999988 4444 66788999999999999977 9999999999999986
No 215
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.21 E-value=5.7e-10 Score=112.28 Aligned_cols=185 Identities=12% Similarity=0.112 Sum_probs=131.0
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceE
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (359)
+++++..+.-|.+.|+.++.++....+|+|||.||+|++|++........ ..+...++..-...+.
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~--------------s~rS~ltys~~~sr~~ 1102 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGG--------------SARSELTYSPEGSRVE 1102 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcc--------------eeeeeEEEeccCCceE
Confidence 67788888899999999999887768999999999999999987322110 1222334433345777
Q ss_pred EEEeCCCCCCeEEEEcCCCcEEEEecCCC--Cc---------------ceecC---------------------------
Q 018235 234 AIDWNPITTGRLVTGDCNSCIYLWEPASD--AT---------------WNVDP--------------------------- 269 (359)
Q Consensus 234 ~l~~sp~~~~~l~sgs~dg~I~lwd~~~~--~~---------------~~~~~--------------------------- 269 (359)
++...+.+. .+|.|+.||.|++.++... .. .++..
T Consensus 1103 ~vt~~~~~~-~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r 1181 (1431)
T KOG1240|consen 1103 KVTMCGNGD-QFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTR 1181 (1431)
T ss_pred EEEeccCCC-eEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecch
Confidence 888887777 8888888888888877541 00 00000
Q ss_pred -------ccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe-ecCCCCEEEEEEcCCCC---eEEEE
Q 018235 270 -------NPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF-KAHNADVNVISWNRCWL---AVCWH 338 (359)
Q Consensus 270 -------~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~-~~h~~~V~~i~~s~~~~---~l~~~ 338 (359)
.......+.|++++.+|.+. +++.|...|.+.+||+|-+ .++.++ ..+..+++.+..+|-.+ ..+.+
T Consensus 1182 ~~~~~w~lk~~~~hG~vTSi~idp~~~-WlviGts~G~l~lWDLRF~-~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~ 1259 (1431)
T KOG1240|consen 1182 MRHDAWRLKNQLRHGLVTSIVIDPWCN-WLVIGTSRGQLVLWDLRFR-VPILSWEHPARAPIRHVWLCPTYPQESVSVSA 1259 (1431)
T ss_pred hhhhHHhhhcCccccceeEEEecCCce-EEEEecCCceEEEEEeecC-ceeecccCcccCCcceEEeeccCCCCceEEEe
Confidence 00112347789999999998 9999999999999999986 666666 45568888888887544 33333
Q ss_pred eeecccceEEEEEeCcCCc
Q 018235 339 LEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 339 ~~~~~~d~~i~iwd~~~g~ 357 (359)
..+ ..+.+.+|+..+|.
T Consensus 1260 ~~~--~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1260 GSS--SNNEVSTWNMETGL 1276 (1431)
T ss_pred ccc--CCCceeeeecccCc
Confidence 321 36779999988774
No 216
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.21 E-value=3.4e-09 Score=102.09 Aligned_cols=166 Identities=12% Similarity=0.065 Sum_probs=111.4
Q ss_pred EecCCCceeeEEEeCCCCcEEEEEe--CCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 161 KVAHQGCVNRIRAMTQNPHICASWA--DTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 161 ~~~H~~~V~~i~~~p~~~~~lat~s--~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
+..|.+.+...+|+|++..++.+.. .+..|++||+.. +.. ..+..+...+.+.+|+
T Consensus 197 lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~---------------------g~~-~~l~~~~g~~~~~~~S 254 (435)
T PRK05137 197 LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLET---------------------GQR-ELVGNFPGMTFAPRFS 254 (435)
T ss_pred EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCC---------------------CcE-EEeecCCCcccCcEEC
Confidence 4468889999999999954444432 346899999976 222 2344455567789999
Q ss_pred CCCCCeEEEEcCCCc--EEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEe-CCC--cEEEEECCCCCCce
Q 018235 239 PITTGRLVTGDCNSC--IYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS-VDG--HIAIWDTRVGKSAL 313 (359)
Q Consensus 239 p~~~~~l~sgs~dg~--I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s-~Dg--~I~iwD~r~~~~~~ 313 (359)
|++..++++.+.++. |++||+.. +.. ..+..+.......+|+|++. .|+..+ .+| .|.++|+..+ ..
T Consensus 255 PDG~~la~~~~~~g~~~Iy~~d~~~-~~~----~~Lt~~~~~~~~~~~spDG~-~i~f~s~~~g~~~Iy~~d~~g~--~~ 326 (435)
T PRK05137 255 PDGRKVVMSLSQGGNTDIYTMDLRS-GTT----TRLTDSPAIDTSPSYSPDGS-QIVFESDRSGSPQLYVMNADGS--NP 326 (435)
T ss_pred CCCCEEEEEEecCCCceEEEEECCC-Cce----EEccCCCCccCceeEcCCCC-EEEEEECCCCCCeEEEEECCCC--Ce
Confidence 999844456666665 67778765 332 34555666677899999998 555554 333 5778887764 34
Q ss_pred EEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 314 TSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 314 ~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
..+..+...+....|+|+|+.+++.... .....|.+|+...+.
T Consensus 327 ~~lt~~~~~~~~~~~SpdG~~ia~~~~~-~~~~~i~~~d~~~~~ 369 (435)
T PRK05137 327 RRISFGGGRYSTPVWSPRGDLIAFTKQG-GGQFSIGVMKPDGSG 369 (435)
T ss_pred EEeecCCCcccCeEECCCCCEEEEEEcC-CCceEEEEEECCCCc
Confidence 4454445567778999999999876532 223567888875443
No 217
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.21 E-value=3.1e-09 Score=102.30 Aligned_cols=160 Identities=14% Similarity=0.133 Sum_probs=100.3
Q ss_pred cCCCceeeEEEeCCCCcEEEEEeCCC--cEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCC
Q 018235 163 AHQGCVNRIRAMTQNPHICASWADTG--HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI 240 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg--~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~ 240 (359)
.+.+.....+|+|++..++++.+.+| .|++||+.. .. +..+..+.......+|+|+
T Consensus 245 ~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~---------------------g~-~~~lt~~~~~~~~~~~spD 302 (433)
T PRK04922 245 SFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGS---------------------RQ-LTRLTNHFGIDTEPTWAPD 302 (433)
T ss_pred cCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCC---------------------CC-eEECccCCCCccceEECCC
Confidence 34555667899999976766766666 588888876 22 2334445445567899999
Q ss_pred CCCeEEEEc-CCCc--EEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEe-CCC--cEEEEECCCCCCceE
Q 018235 241 TTGRLVTGD-CNSC--IYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS-VDG--HIAIWDTRVGKSALT 314 (359)
Q Consensus 241 ~~~~l~sgs-~dg~--I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s-~Dg--~I~iwD~r~~~~~~~ 314 (359)
+. .|+.++ .+|. |+++++.. +... .+..+......++|+|++. .|+..+ .++ .|.+||+.++ . ..
T Consensus 303 G~-~l~f~sd~~g~~~iy~~dl~~-g~~~----~lt~~g~~~~~~~~SpDG~-~Ia~~~~~~~~~~I~v~d~~~g-~-~~ 373 (433)
T PRK04922 303 GK-SIYFTSDRGGRPQIYRVAASG-GSAE----RLTFQGNYNARASVSPDGK-KIAMVHGSGGQYRIAVMDLSTG-S-VR 373 (433)
T ss_pred CC-EEEEEECCCCCceEEEEECCC-CCeE----EeecCCCCccCEEECCCCC-EEEEEECCCCceeEEEEECCCC-C-eE
Confidence 98 665544 4555 55566654 3321 2222223345689999999 555443 332 5999999876 3 23
Q ss_pred EeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 315 SFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 315 ~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
.+. +.......+|+|+|..+++.... .....|.+++...
T Consensus 374 ~Lt-~~~~~~~p~~spdG~~i~~~s~~-~g~~~L~~~~~~g 412 (433)
T PRK04922 374 TLT-PGSLDESPSFAPNGSMVLYATRE-GGRGVLAAVSTDG 412 (433)
T ss_pred ECC-CCCCCCCceECCCCCEEEEEEec-CCceEEEEEECCC
Confidence 332 33234567999999998887653 2234577777644
No 218
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.20 E-value=5e-09 Score=100.62 Aligned_cols=157 Identities=12% Similarity=0.046 Sum_probs=97.7
Q ss_pred CCceeeEEEeCCCCcEEEEEeCCC--cEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCC
Q 018235 165 QGCVNRIRAMTQNPHICASWADTG--HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (359)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg--~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~ 242 (359)
.+.+..++|+|++..++++.+.+| .|++||+.. ... ..+..+...+....|+|++.
T Consensus 242 ~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~t---------------------g~~-~~lt~~~~~~~~~~wSPDG~ 299 (429)
T PRK03629 242 PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS---------------------GQI-RQVTDGRSNNTEPTWFPDSQ 299 (429)
T ss_pred CCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCC---------------------CCE-EEccCCCCCcCceEECCCCC
Confidence 344556899999966666655555 488888865 222 23333444667899999998
Q ss_pred CeEEEEc-CCCcEEEE--ecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEe-CC--CcEEEEECCCCCCceEEe
Q 018235 243 GRLVTGD-CNSCIYLW--EPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS-VD--GHIAIWDTRVGKSALTSF 316 (359)
Q Consensus 243 ~~l~sgs-~dg~I~lw--d~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s-~D--g~I~iwD~r~~~~~~~~~ 316 (359)
.|+..+ .++...|| ++.. +.. ..+..+...+....|+|++. .|+..+ .+ ..|.+||+.++ . ...+
T Consensus 300 -~I~f~s~~~g~~~Iy~~d~~~-g~~----~~lt~~~~~~~~~~~SpDG~-~Ia~~~~~~g~~~I~~~dl~~g-~-~~~L 370 (429)
T PRK03629 300 -NLAYTSDQAGRPQVYKVNING-GAP----QRITWEGSQNQDADVSSDGK-FMVMVSSNGGQQHIAKQDLATG-G-VQVL 370 (429)
T ss_pred -EEEEEeCCCCCceEEEEECCC-CCe----EEeecCCCCccCEEECCCCC-EEEEEEccCCCceEEEEECCCC-C-eEEe
Confidence 665554 44555555 5543 222 22333444566789999999 555544 33 35888999876 3 3334
Q ss_pred ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 317 KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 317 ~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
... ......+|+|+|..+++.... +....+.+++..
T Consensus 371 t~~-~~~~~p~~SpDG~~i~~~s~~-~~~~~l~~~~~~ 406 (429)
T PRK03629 371 TDT-FLDETPSIAPNGTMVIYSSSQ-GMGSVLNLVSTD 406 (429)
T ss_pred CCC-CCCCCceECCCCCEEEEEEcC-CCceEEEEEECC
Confidence 321 223467899999999887653 223457777754
No 219
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.20 E-value=9e-10 Score=109.33 Aligned_cols=142 Identities=18% Similarity=0.217 Sum_probs=117.3
Q ss_pred cEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEe
Q 018235 179 HICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWE 258 (359)
Q Consensus 179 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd 258 (359)
-.+++|+.-+.|.+|+... ...|. .+.||.+.++++.|+.++. +++|+|.|.+|++|+
T Consensus 146 ~~i~~gsv~~~iivW~~~~--------------------dn~p~-~l~GHeG~iF~i~~s~dg~-~i~s~SdDRsiRlW~ 203 (967)
T KOG0974|consen 146 LYIASGSVFGEIIVWKPHE--------------------DNKPI-RLKGHEGSIFSIVTSLDGR-YIASVSDDRSIRLWP 203 (967)
T ss_pred EEEEeccccccEEEEeccc--------------------cCCcc-eecccCCceEEEEEccCCc-EEEEEecCcceeeee
Confidence 6889999999999999885 23444 6889999999999999998 999999999999999
Q ss_pred cCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCC-CCEEEEEEcCCCCeEEE
Q 018235 259 PASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHN-ADVNVISWNRCWLAVCW 337 (359)
Q Consensus 259 ~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~-~~V~~i~~s~~~~~l~~ 337 (359)
+.+..... ....+|+..|.+++|+|+ .++|++.|.++++|+... ..+..+..|. ..|+.+...+...++++
T Consensus 204 i~s~~~~~---~~~fgHsaRvw~~~~~~n---~i~t~gedctcrvW~~~~--~~l~~y~~h~g~~iw~~~~~~~~~~~vT 275 (967)
T KOG0974|consen 204 IDSREVLG---CTGFGHSARVWACCFLPN---RIITVGEDCTCRVWGVNG--TQLEVYDEHSGKGIWKIAVPIGVIIKVT 275 (967)
T ss_pred cccccccC---cccccccceeEEEEeccc---eeEEeccceEEEEEeccc--ceehhhhhhhhcceeEEEEcCCceEEEe
Confidence 98743322 456789999999999998 799999999999996654 3444666664 46899999988887777
Q ss_pred EeeecccceEEEEEeCc
Q 018235 338 HLEVMMEHFLFMILDCS 354 (359)
Q Consensus 338 ~~~~~~~d~~i~iwd~~ 354 (359)
+.. |+.+++|+..
T Consensus 276 ~g~----Ds~lk~~~l~ 288 (967)
T KOG0974|consen 276 GGN----DSTLKLWDLN 288 (967)
T ss_pred ecc----Ccchhhhhhh
Confidence 765 8889998754
No 220
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.20 E-value=1.3e-09 Score=104.78 Aligned_cols=172 Identities=12% Similarity=0.076 Sum_probs=106.9
Q ss_pred EecCCCceeeEEEeCCCCcEEEEEeCC--CcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 161 KVAHQGCVNRIRAMTQNPHICASWADT--GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 161 ~~~H~~~V~~i~~~p~~~~~lat~s~d--g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
+..+.+.+...+|+|++..++.+...+ ..|++||+.. +... .+........+..|+
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~---------------------g~~~-~l~~~~g~~~~~~~S 248 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLAT---------------------GRRR-VVANFKGSNSAPAWS 248 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCC---------------------CCEE-EeecCCCCccceEEC
Confidence 346778899999999994444443233 4599999976 2221 222223345689999
Q ss_pred CCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeec
Q 018235 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA 318 (359)
Q Consensus 239 p~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~ 318 (359)
|++..++++.+.+|...||.+...+... ..+..+...+....|+|++..++++...+|...||.+.........+..
T Consensus 249 PDG~~la~~~~~~g~~~Iy~~d~~~~~~---~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~ 325 (427)
T PRK02889 249 PDGRTLAVALSRDGNSQIYTVNADGSGL---RRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTF 325 (427)
T ss_pred CCCCEEEEEEccCCCceEEEEECCCCCc---EECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEec
Confidence 9998334467788887777654322222 3455555666778999999944444434567777765432122233322
Q ss_pred CCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 319 HNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 319 h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
+.......+|+|+|+++++.... .....|.+|+..++..
T Consensus 326 ~g~~~~~~~~SpDG~~Ia~~s~~-~g~~~I~v~d~~~g~~ 364 (427)
T PRK02889 326 TGSYNTSPRISPDGKLLAYISRV-GGAFKLYVQDLATGQV 364 (427)
T ss_pred CCCCcCceEECCCCCEEEEEEcc-CCcEEEEEEECCCCCe
Confidence 33334467899999999877542 2235789999877653
No 221
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.19 E-value=1.9e-09 Score=96.55 Aligned_cols=169 Identities=14% Similarity=0.127 Sum_probs=128.5
Q ss_pred CCceeeEEEeCCCCcEEEEEeCC--CcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCC-CCceEEEEeCCC-
Q 018235 165 QGCVNRIRAMTQNPHICASWADT--GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGH-KDEGYAIDWNPI- 240 (359)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~d--g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~sp~- 240 (359)
...+..++-++..++++|+|+.. ..+.|||+....+.+..... |--.+.-. .-.++++.|-+.
T Consensus 148 g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNv-------------pnD~L~LrVPvW~tdi~Fl~g~ 214 (412)
T KOG3881|consen 148 GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNV-------------PNDRLGLRVPVWITDIRFLEGS 214 (412)
T ss_pred CCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCC-------------CCccccceeeeeeccceecCCC
Confidence 36788889999889999999988 88999999874222211110 00000000 013456777655
Q ss_pred -CCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecC
Q 018235 241 -TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAH 319 (359)
Q Consensus 241 -~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h 319 (359)
.. .||+++.-+.+++||++.+..++ ..|.--..++.++...|.+. ++.+|..-|.+..||+|.+......+.+.
T Consensus 215 ~~~-~fat~T~~hqvR~YDt~~qRRPV---~~fd~~E~~is~~~l~p~gn-~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~ 289 (412)
T KOG3881|consen 215 PNY-KFATITRYHQVRLYDTRHQRRPV---AQFDFLENPISSTGLTPSGN-FIYTGNTKGQLAKFDLRGGKLLGCGLKGI 289 (412)
T ss_pred CCc-eEEEEecceeEEEecCcccCcce---eEeccccCcceeeeecCCCc-EEEEecccchhheecccCceeeccccCCc
Confidence 44 89999999999999999866655 45555678999999999998 89999999999999999984444557888
Q ss_pred CCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 320 NADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 320 ~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
.+.|.+|..+|..++++...- |..+||+|..+
T Consensus 290 tGsirsih~hp~~~~las~GL----DRyvRIhD~kt 321 (412)
T KOG3881|consen 290 TGSIRSIHCHPTHPVLASCGL----DRYVRIHDIKT 321 (412)
T ss_pred cCCcceEEEcCCCceEEeecc----ceeEEEeeccc
Confidence 999999999999998886654 99999999877
No 222
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.19 E-value=3.6e-09 Score=101.92 Aligned_cols=164 Identities=12% Similarity=0.100 Sum_probs=105.4
Q ss_pred ecCCCceeeEEEeCCCCcEEEEEeCCCc--EEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCC
Q 018235 162 VAHQGCVNRIRAMTQNPHICASWADTGH--VQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (359)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~--V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp 239 (359)
..+.+.+...+|+|++..++++.+.+|. |++||+.. .....+..+........|+|
T Consensus 242 ~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~----------------------~~~~~Lt~~~~~~~~~~~sp 299 (435)
T PRK05137 242 GNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRS----------------------GTTTRLTDSPAIDTSPSYSP 299 (435)
T ss_pred ecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCC----------------------CceEEccCCCCccCceeEcC
Confidence 3567788899999999767777777666 66667655 22344555555566789999
Q ss_pred CCCCeEEEEc-CCC--cEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCC---CcEEEEECCCCCCce
Q 018235 240 ITTGRLVTGD-CNS--CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD---GHIAIWDTRVGKSAL 313 (359)
Q Consensus 240 ~~~~~l~sgs-~dg--~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D---g~I~iwD~r~~~~~~ 313 (359)
++. .|+..+ .+| .|++||+.. +.. +.+..+...+....|+|++. .|+..+.+ ..|.+||+..+ ..
T Consensus 300 DG~-~i~f~s~~~g~~~Iy~~d~~g-~~~----~~lt~~~~~~~~~~~SpdG~-~ia~~~~~~~~~~i~~~d~~~~--~~ 370 (435)
T PRK05137 300 DGS-QIVFESDRSGSPQLYVMNADG-SNP----RRISFGGGRYSTPVWSPRGD-LIAFTKQGGGQFSIGVMKPDGS--GE 370 (435)
T ss_pred CCC-EEEEEECCCCCCeEEEEECCC-CCe----EEeecCCCcccCeEECCCCC-EEEEEEcCCCceEEEEEECCCC--ce
Confidence 998 665554 344 577778754 332 23333445567789999999 55555432 35888887654 22
Q ss_pred EEeecCCCCEEEEEEcCCCCeEEEEeeecccc--eEEEEEeCcCCc
Q 018235 314 TSFKAHNADVNVISWNRCWLAVCWHLEVMMEH--FLFMILDCSRGE 357 (359)
Q Consensus 314 ~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d--~~i~iwd~~~g~ 357 (359)
..+. ....+..++|+|+|+.|++.....+.. ..|.+++...+.
T Consensus 371 ~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 371 RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN 415 (435)
T ss_pred Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc
Confidence 3332 233467889999999998876533221 356677765543
No 223
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.18 E-value=2.6e-10 Score=101.99 Aligned_cols=139 Identities=18% Similarity=0.263 Sum_probs=114.6
Q ss_pred CceeeEEEeCCC-CcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCe
Q 018235 166 GCVNRIRAMTQN-PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGR 244 (359)
Q Consensus 166 ~~V~~i~~~p~~-~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~ 244 (359)
-.++.++|.+.. ++.|||++.-++|++||.+. ..+|+..|..-..++.++.--|.+. .
T Consensus 203 vW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~--------------------qRRPV~~fd~~E~~is~~~l~p~gn-~ 261 (412)
T KOG3881|consen 203 VWITDIRFLEGSPNYKFATITRYHQVRLYDTRH--------------------QRRPVAQFDFLENPISSTGLTPSGN-F 261 (412)
T ss_pred eeeccceecCCCCCceEEEEecceeEEEecCcc--------------------cCcceeEeccccCcceeeeecCCCc-E
Confidence 346678888762 37899999999999999997 4789999988888999999999998 9
Q ss_pred EEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEE
Q 018235 245 LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVN 324 (359)
Q Consensus 245 l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~ 324 (359)
+++|...|.+..||++. +... ...|.+-+++|.+|..+|+++ ++|+|+-|+.|||+|+.+. +.+..+. -.+.++
T Consensus 262 Iy~gn~~g~l~~FD~r~-~kl~--g~~~kg~tGsirsih~hp~~~-~las~GLDRyvRIhD~ktr-kll~kvY-vKs~lt 335 (412)
T KOG3881|consen 262 IYTGNTKGQLAKFDLRG-GKLL--GCGLKGITGSIRSIHCHPTHP-VLASCGLDRYVRIHDIKTR-KLLHKVY-VKSRLT 335 (412)
T ss_pred EEEecccchhheecccC-ceee--ccccCCccCCcceEEEcCCCc-eEEeeccceeEEEeecccc-hhhhhhh-hhcccc
Confidence 99999999999999988 4433 256888999999999999999 9999999999999999985 4443331 233466
Q ss_pred EEEEcCC
Q 018235 325 VISWNRC 331 (359)
Q Consensus 325 ~i~~s~~ 331 (359)
+|-+.++
T Consensus 336 ~il~~~~ 342 (412)
T KOG3881|consen 336 FILLRDD 342 (412)
T ss_pred EEEecCC
Confidence 6666543
No 224
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.18 E-value=1.4e-10 Score=111.19 Aligned_cols=202 Identities=15% Similarity=0.285 Sum_probs=154.6
Q ss_pred hcccccCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCC
Q 018235 61 HAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDS 140 (359)
Q Consensus 61 ~~~~~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~ 140 (359)
..|-..|-.--+||-|-. ..-|.++.|... .-.||.+. +.
T Consensus 62 l~h~tpw~vad~qws~h~---------a~~~wiVsts~q-----kaiiwnlA---~s----------------------- 101 (1081)
T KOG0309|consen 62 LHHITPWQVADVQWSPHP---------AKPYWIVSTSNQ-----KAIIWNLA---KS----------------------- 101 (1081)
T ss_pred eeccCcchhcceecccCC---------CCceeEEecCcc-----hhhhhhhh---cC-----------------------
Confidence 446678888888888763 235777777543 23355542 10
Q ss_pred CCCCCcccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCC
Q 018235 141 DEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQS 220 (359)
Q Consensus 141 ~~d~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (359)
....++.-+.+|...|+.+.|+|+.+.++||++.|..|+.||++. ...
T Consensus 102 ------------s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rS--------------------p~~ 149 (1081)
T KOG0309|consen 102 ------------SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRS--------------------PHR 149 (1081)
T ss_pred ------------CccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccC--------------------CCc
Confidence 144566788899999999999999999999999999999999998 467
Q ss_pred CcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCc
Q 018235 221 PLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGH 300 (359)
Q Consensus 221 ~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~ 300 (359)
|+.++..-......+.|+...+ .++..+..+.|++||.+.++.++ ..+.+|...|+.+.|...-...+.+++.||+
T Consensus 150 p~ys~~~w~s~asqVkwnyk~p-~vlasshg~~i~vwd~r~gs~pl---~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~t 225 (1081)
T KOG0309|consen 150 PFYSTSSWRSAASQVKWNYKDP-NVLASSHGNDIFVWDLRKGSTPL---CSLKGHVSSVNSIDFNRFKYSEIMSSSNDGT 225 (1081)
T ss_pred ceeeeecccccCceeeecccCc-chhhhccCCceEEEeccCCCcce---EEecccceeeehHHHhhhhhhhhcccCCCCc
Confidence 8877766666778999998887 44445557789999999977766 6788899999999998876668999999999
Q ss_pred EEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEE
Q 018235 301 IAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWH 338 (359)
Q Consensus 301 I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~ 338 (359)
|++||.......-......+.+|+.-.+-|.|...+..
T Consensus 226 vkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~m 263 (1081)
T KOG0309|consen 226 VKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIM 263 (1081)
T ss_pred eeeecccccccccceeccccCcceeccccccCceeEec
Confidence 99999887522222233456788888888888765543
No 225
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.18 E-value=1.6e-09 Score=105.93 Aligned_cols=122 Identities=16% Similarity=0.177 Sum_probs=98.9
Q ss_pred CCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECC
Q 018235 228 HKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTR 307 (359)
Q Consensus 228 h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r 307 (359)
|+-.+.+.++||.+. ++|+|..||.|.+|.--....-....+.+..|...|++++|+++|. .|.||+..|.+.+|.+.
T Consensus 204 Htf~~t~~~~spn~~-~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~-~LlSGG~E~VLv~Wq~~ 281 (792)
T KOG1963|consen 204 HTFNITCVALSPNER-YLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGA-YLLSGGREGVLVLWQLE 281 (792)
T ss_pred hcccceeEEeccccc-eEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCc-eEeecccceEEEEEeec
Confidence 444578899999998 9999999999999953220111111256778999999999999999 99999999999999999
Q ss_pred CCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 308 VGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 308 ~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
++ + ...+..-.++|..+.++|++.+.+..+. |+.|.+......+
T Consensus 282 T~-~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~----DNqI~li~~~dl~ 325 (792)
T KOG1963|consen 282 TG-K-KQFLPRLGSPILHIVVSPDSDLYSLVLE----DNQIHLIKASDLE 325 (792)
T ss_pred CC-C-cccccccCCeeEEEEEcCCCCeEEEEec----CceEEEEeccchh
Confidence 97 3 3455778899999999999999888887 8888888775543
No 226
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.18 E-value=8.1e-10 Score=98.06 Aligned_cols=158 Identities=17% Similarity=0.312 Sum_probs=112.8
Q ss_pred CCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEec-CCCCceEEEEeCCCCCC
Q 018235 165 QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG-GHKDEGYAIDWNPITTG 243 (359)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~sp~~~~ 243 (359)
...+..++|+++- .-+|++..|-.|++|+-.. ..| ..++ .....+.+|+|-|.+..
T Consensus 98 ~~dlr~~aWhqH~-~~fava~nddvVriy~kss---------------------t~p-t~Lks~sQrnvtclawRPlsas 154 (445)
T KOG2139|consen 98 EIDLRGVAWHQHI-IAFAVATNDDVVRIYDKSS---------------------TCP-TKLKSVSQRNVTCLAWRPLSAS 154 (445)
T ss_pred hcceeeEeechhh-hhhhhhccCcEEEEeccCC---------------------CCC-ceecchhhcceeEEEeccCCcc
Confidence 3567888999855 5678889999999999776 122 2232 23458999999999885
Q ss_pred eEEEEcCCCcEEEEecCCCCcceec----------CccccCCCCCeEEEEecCCCCCEEEEEe-CCCcEEEEECCCCCCc
Q 018235 244 RLVTGDCNSCIYLWEPASDATWNVD----------PNPFIGHSASVEDLQWSPTEPDVFASCS-VDGHIAIWDTRVGKSA 312 (359)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~----------~~~~~~h~~~V~~v~~sp~~~~~las~s-~Dg~I~iwD~r~~~~~ 312 (359)
.|+.| +-+-|++|........... +....+| ..|+.++|.+++. .+++++ .|..|.|||..++ ..
T Consensus 155 elavg-Cr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt-~l~tAS~gsssi~iWdpdtg-~~ 230 (445)
T KOG2139|consen 155 ELAVG-CRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT-ILVTASFGSSSIMIWDPDTG-QK 230 (445)
T ss_pred eeeee-ecceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC-EEeecccCcceEEEEcCCCC-Cc
Confidence 55555 5778999976542221110 1122344 6899999999998 777776 5788999999987 32
Q ss_pred eEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeC
Q 018235 313 LTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDC 353 (359)
Q Consensus 313 ~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~ 353 (359)
+.-.....+.+.-+.|+|++.++....- |..+++|+.
T Consensus 231 ~pL~~~glgg~slLkwSPdgd~lfaAt~----davfrlw~e 267 (445)
T KOG2139|consen 231 IPLIPKGLGGFSLLKWSPDGDVLFAATC----DAVFRLWQE 267 (445)
T ss_pred ccccccCCCceeeEEEcCCCCEEEEecc----cceeeeehh
Confidence 2222344566889999999999988776 888999953
No 227
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.16 E-value=1.5e-09 Score=101.50 Aligned_cols=160 Identities=15% Similarity=0.209 Sum_probs=112.8
Q ss_pred cCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCC
Q 018235 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~ 242 (359)
.-.+++|+|..++-. .+||+|+.+|.|..||.+....... .... ...+-.........|+++.|+.+|-
T Consensus 173 ~~~~~lN~v~in~~h-gLla~Gt~~g~VEfwDpR~ksrv~~-l~~~---------~~v~s~pg~~~~~svTal~F~d~gL 241 (703)
T KOG2321|consen 173 TDSGELNVVSINEEH-GLLACGTEDGVVEFWDPRDKSRVGT-LDAA---------SSVNSHPGGDAAPSVTALKFRDDGL 241 (703)
T ss_pred cccccceeeeecCcc-ceEEecccCceEEEecchhhhhhee-eecc---------cccCCCccccccCcceEEEecCCce
Confidence 445999999999988 7999999999999999887221100 0000 0000001111223699999999886
Q ss_pred CeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCC-CEEEEEeCCCcEEEEECCCCCCceEEeecCCC
Q 018235 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEP-DVFASCSVDGHIAIWDTRVGKSALTSFKAHNA 321 (359)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~-~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~ 321 (359)
.++.|...|.+.|||+++ .+++. ..-.+...+|..+.|.+.+. ..++|+ ....++|||-.++ ++...+. ...
T Consensus 242 -~~aVGts~G~v~iyDLRa-~~pl~--~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~G-k~~asiE-pt~ 314 (703)
T KOG2321|consen 242 -HVAVGTSTGSVLIYDLRA-SKPLL--VKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTG-KPMASIE-PTS 314 (703)
T ss_pred -eEEeeccCCcEEEEEccc-CCcee--ecccCCccceeeecccccCCCceEEec-chHHhhhcccccC-Cceeecc-ccC
Confidence 999999999999999998 44431 22334557899999988733 255544 4567999999998 6666664 345
Q ss_pred CEEEEEEcCCCCeEEEEee
Q 018235 322 DVNVISWNRCWLAVCWHLE 340 (359)
Q Consensus 322 ~V~~i~~s~~~~~l~~~~~ 340 (359)
++|.+|+-|++.+++++..
T Consensus 315 ~lND~C~~p~sGm~f~Ane 333 (703)
T KOG2321|consen 315 DLNDFCFVPGSGMFFTANE 333 (703)
T ss_pred CcCceeeecCCceEEEecC
Confidence 6999999999988888765
No 228
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.16 E-value=5.3e-10 Score=100.06 Aligned_cols=153 Identities=12% Similarity=0.110 Sum_probs=115.2
Q ss_pred EEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecC--CCCceEEEEe
Q 018235 160 RKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGG--HKDEGYAIDW 237 (359)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~ 237 (359)
.-..|...|.|+.|...+ ..+.+|..+|+|.+.|+.+ ...+.++.. ..+.||.|+.
T Consensus 100 ~~~~H~SNIF~L~F~~~N-~~~~SG~~~~~VI~HDiEt---------------------~qsi~V~~~~~~~~~VY~m~~ 157 (609)
T KOG4227|consen 100 MEHPHRSNIFSLEFDLEN-RFLYSGERWGTVIKHDIET---------------------KQSIYVANENNNRGDVYHMDQ 157 (609)
T ss_pred ccCccccceEEEEEccCC-eeEecCCCcceeEeeeccc---------------------ceeeeeecccCcccceeeccc
Confidence 334677999999999877 8999999999999999987 344444432 2348999999
Q ss_pred CCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe-
Q 018235 238 NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF- 316 (359)
Q Consensus 238 sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~- 316 (359)
+|... .|++.+.+|.|.+||++........ ............+-|+|..+.+|++.+..+-+.+||+|....++...
T Consensus 158 ~P~DN-~~~~~t~~~~V~~~D~Rd~~~~~~~-~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~ 235 (609)
T KOG4227|consen 158 HPTDN-TLIVVTRAKLVSFIDNRDRQNPISL-VLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRS 235 (609)
T ss_pred CCCCc-eEEEEecCceEEEEeccCCCCCCce-eeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhh
Confidence 99977 9999999999999999874333211 11222445678899999999899999999999999999875554432
Q ss_pred -----ecCCCCEEEEEEcCCCCeEE
Q 018235 317 -----KAHNADVNVISWNRCWLAVC 336 (359)
Q Consensus 317 -----~~h~~~V~~i~~s~~~~~l~ 336 (359)
.........+.|+|.|..++
T Consensus 236 ~~~~L~~~~~~~M~~~~~~~G~Q~m 260 (609)
T KOG4227|consen 236 MFKGLPQENTEWMGSLWSPSGNQFM 260 (609)
T ss_pred ccccCcccchhhhheeeCCCCCeeh
Confidence 22223345678999987654
No 229
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.15 E-value=1.3e-08 Score=94.35 Aligned_cols=170 Identities=9% Similarity=0.021 Sum_probs=111.2
Q ss_pred EEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCC
Q 018235 160 RKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (359)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp 239 (359)
+.+.+.+....+.++|++..+++++..++.|.+|++.... . ...+.... .......+.++|
T Consensus 29 ~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g-~-----------------l~~~~~~~-~~~~p~~i~~~~ 89 (330)
T PRK11028 29 QVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDG-A-----------------LTFAAESP-LPGSPTHISTDH 89 (330)
T ss_pred eEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCC-c-----------------eEEeeeec-CCCCceEEEECC
Confidence 4445667788999999995555665678999999997410 0 01111111 122346899999
Q ss_pred CCCCeEEEE-cCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCce-----
Q 018235 240 ITTGRLVTG-DCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL----- 313 (359)
Q Consensus 240 ~~~~~l~sg-s~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~----- 313 (359)
+++ +|+++ ..++.|.+|++...+........+. +......++++|++..+++++..++.|.+||+.+.....
T Consensus 90 ~g~-~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~ 167 (330)
T PRK11028 90 QGR-FLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPA 167 (330)
T ss_pred CCC-EEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCC
Confidence 998 55554 4588999999975332211112222 334467789999999666778888999999998641211
Q ss_pred -EEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 314 -TSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 314 -~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
..+. .......+.|+|+++++...... .+.|.+|+..
T Consensus 168 ~~~~~-~g~~p~~~~~~pdg~~lyv~~~~---~~~v~v~~~~ 205 (330)
T PRK11028 168 EVTTV-EGAGPRHMVFHPNQQYAYCVNEL---NSSVDVWQLK 205 (330)
T ss_pred ceecC-CCCCCceEEECCCCCEEEEEecC---CCEEEEEEEe
Confidence 1121 23446789999999988776543 6788899876
No 230
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.12 E-value=2.4e-08 Score=95.72 Aligned_cols=168 Identities=14% Similarity=0.128 Sum_probs=100.3
Q ss_pred CCCceeeEEEeCCCCcEEEEEeCCC--cE--EEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCC
Q 018235 164 HQGCVNRIRAMTQNPHICASWADTG--HV--QVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (359)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg--~V--~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp 239 (359)
..+.....+|+|+|..++++....| .+ .+|++.... ...+.....++.......+|+|
T Consensus 229 ~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~------------------~g~~~~lt~~~~~~~~~p~wSP 290 (428)
T PRK01029 229 LQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGA------------------IGKPRRLLNEAFGTQGNPSFSP 290 (428)
T ss_pred CCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCC------------------CCcceEeecCCCCCcCCeEECC
Confidence 4555667899999966666554444 23 335554310 0122233333333345789999
Q ss_pred CCCCeEEE-EcCCCcEEEEe--cCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeC-C--CcEEEEECCCCCCce
Q 018235 240 ITTGRLVT-GDCNSCIYLWE--PASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSV-D--GHIAIWDTRVGKSAL 313 (359)
Q Consensus 240 ~~~~~l~s-gs~dg~I~lwd--~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~-D--g~I~iwD~r~~~~~~ 313 (359)
+|. .|+. ...+|...||. +...+... ..+..+...+...+|||++. .|+.++. + ..|.+||+.++ . .
T Consensus 291 DG~-~Laf~s~~~g~~~ly~~~~~~~g~~~---~~lt~~~~~~~~p~wSPDG~-~Laf~~~~~g~~~I~v~dl~~g-~-~ 363 (428)
T PRK01029 291 DGT-RLVFVSNKDGRPRIYIMQIDPEGQSP---RLLTKKYRNSSCPAWSPDGK-KIAFCSVIKGVRQICVYDLATG-R-D 363 (428)
T ss_pred CCC-EEEEEECCCCCceEEEEECcccccce---EEeccCCCCccceeECCCCC-EEEEEEcCCCCcEEEEEECCCC-C-e
Confidence 998 5554 44567655554 33212211 33444455677889999999 5555443 3 36899999886 3 3
Q ss_pred EEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 314 TSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 314 ~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
..+......+....|+|+|+.|++.... .....|.+++...+.
T Consensus 364 ~~Lt~~~~~~~~p~wSpDG~~L~f~~~~-~g~~~L~~vdl~~g~ 406 (428)
T PRK01029 364 YQLTTSPENKESPSWAIDSLHLVYSAGN-SNESELYLISLITKK 406 (428)
T ss_pred EEccCCCCCccceEECCCCCEEEEEECC-CCCceEEEEECCCCC
Confidence 3343333456778999999988876542 224567888877664
No 231
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.12 E-value=1.1e-10 Score=106.54 Aligned_cols=158 Identities=14% Similarity=0.149 Sum_probs=130.5
Q ss_pred ecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCC
Q 018235 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPIT 241 (359)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~ 241 (359)
+.-...|..++|.... .++|. .....++|||-.. ..++.++.|. ++..|.|-|..
T Consensus 167 i~v~Etv~Dv~~LHne-q~~AV-AQK~y~yvYD~~G----------------------tElHClk~~~-~v~rLeFLPyH 221 (545)
T KOG1272|consen 167 INVMETVRDVTFLHNE-QFFAV-AQKKYVYVYDNNG----------------------TELHCLKRHI-RVARLEFLPYH 221 (545)
T ss_pred eehhhhhhhhhhhcch-HHHHh-hhhceEEEecCCC----------------------cEEeehhhcC-chhhhcccchh
Confidence 3456788888988766 56665 5668899999764 4455565554 78899999998
Q ss_pred CCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCC
Q 018235 242 TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNA 321 (359)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~ 321 (359)
- +|++++..|.++.-|+.. ++.+ ..+....+.+..++-+|-+. ++-+|...|+|.+|...+. .++..+..|.+
T Consensus 222 f-LL~~~~~~G~L~Y~DVS~-GklV---a~~~t~~G~~~vm~qNP~Na-Vih~GhsnGtVSlWSP~sk-ePLvKiLcH~g 294 (545)
T KOG1272|consen 222 F-LLVAASEAGFLKYQDVST-GKLV---ASIRTGAGRTDVMKQNPYNA-VIHLGHSNGTVSLWSPNSK-EPLVKILCHRG 294 (545)
T ss_pred h-eeeecccCCceEEEeech-hhhh---HHHHccCCccchhhcCCccc-eEEEcCCCceEEecCCCCc-chHHHHHhcCC
Confidence 6 999999999999999987 5554 44555567778888899998 9999999999999998886 78888889999
Q ss_pred CEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 322 DVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 322 ~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
+|++|++.+.|.+++++.. |..++|||++.
T Consensus 295 ~V~siAv~~~G~YMaTtG~----Dr~~kIWDlR~ 324 (545)
T KOG1272|consen 295 PVSSIAVDRGGRYMATTGL----DRKVKIWDLRN 324 (545)
T ss_pred CcceEEECCCCcEEeeccc----ccceeEeeecc
Confidence 9999999999999998876 99999999875
No 232
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.11 E-value=4.1e-08 Score=91.12 Aligned_cols=172 Identities=12% Similarity=0.111 Sum_probs=108.4
Q ss_pred cCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCC
Q 018235 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~ 242 (359)
...+....+.++|++..++++...++.|.+|++..... ....+..+.+ ....++++++|++.
T Consensus 77 ~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~-----------------~~~~~~~~~~-~~~~~~~~~~p~g~ 138 (330)
T PRK11028 77 PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGI-----------------PVAPIQIIEG-LEGCHSANIDPDNR 138 (330)
T ss_pred cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCC-----------------CCCceeeccC-CCcccEeEeCCCCC
Confidence 44556678999999965666655689999999964110 0112222322 23467889999998
Q ss_pred CeEEEEcCCCcEEEEecCCCCcceec-Ccccc-CCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCC---ceEEee
Q 018235 243 GRLVTGDCNSCIYLWEPASDATWNVD-PNPFI-GHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS---ALTSFK 317 (359)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~-~~~~~-~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~---~~~~~~ 317 (359)
..+++...++.|.+||+...+..... ..... ........+.|+|+++.++++...+++|.+|++..... .+..+.
T Consensus 139 ~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~ 218 (330)
T PRK11028 139 TLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLD 218 (330)
T ss_pred EEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEe
Confidence 44466667799999999763332100 00011 11234678999999994445555599999999974211 223332
Q ss_pred cC------CCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 318 AH------NADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 318 ~h------~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
.+ ......+.|+|+++++....+. .+.|.+|+...
T Consensus 219 ~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~---~~~I~v~~i~~ 259 (330)
T PRK11028 219 MMPADFSDTRWAADIHITPDGRHLYACDRT---ASLISVFSVSE 259 (330)
T ss_pred cCCCcCCCCccceeEEECCCCCEEEEecCC---CCeEEEEEEeC
Confidence 22 1123468899999988887543 67899998643
No 233
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.09 E-value=4.8e-09 Score=102.59 Aligned_cols=165 Identities=13% Similarity=0.141 Sum_probs=122.9
Q ss_pred cCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCC
Q 018235 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~ 242 (359)
.|.-.+++.+++|.+ .++|++..||+|.+|.--.... .......+..|..+|.+|+|+++|.
T Consensus 203 ~Htf~~t~~~~spn~-~~~Aa~d~dGrI~vw~d~~~~~-----------------~~~t~t~lHWH~~~V~~L~fS~~G~ 264 (792)
T KOG1963|consen 203 HHTFNITCVALSPNE-RYLAAGDSDGRILVWRDFGSSD-----------------DSETCTLLHWHHDEVNSLSFSSDGA 264 (792)
T ss_pred hhcccceeEEecccc-ceEEEeccCCcEEEEecccccc-----------------ccccceEEEecccccceeEEecCCc
Confidence 477778999999999 8999999999999996433100 1234567889999999999999998
Q ss_pred CeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCC--CCceEEeec--
Q 018235 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG--KSALTSFKA-- 318 (359)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~--~~~~~~~~~-- 318 (359)
+|+||+..|.+.+|.+.++.+ +-+..-.++|..+.+||++. +.+.+..|..|.+...... +..+..+..
T Consensus 265 -~LlSGG~E~VLv~Wq~~T~~k-----qfLPRLgs~I~~i~vS~ds~-~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~ 337 (792)
T KOG1963|consen 265 -YLLSGGREGVLVLWQLETGKK-----QFLPRLGSPILHIVVSPDSD-LYSLVLEDNQIHLIKASDLEIKSTISGIKPPT 337 (792)
T ss_pred -eEeecccceEEEEEeecCCCc-----ccccccCCeeEEEEEcCCCC-eEEEEecCceEEEEeccchhhhhhccCccCCC
Confidence 999999999999999988542 33455678999999999999 8888889999999877543 111211211
Q ss_pred ------CCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 319 ------HNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 319 ------h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
..+-.+.++++|....++.... .+.|+++|.-+.
T Consensus 338 ~~~k~~~~~l~t~~~idpr~~~~vln~~----~g~vQ~ydl~td 377 (792)
T KOG1963|consen 338 PSTKTRPQSLTTGVSIDPRTNSLVLNGH----PGHVQFYDLYTD 377 (792)
T ss_pred ccccccccccceeEEEcCCCCceeecCC----CceEEEEecccc
Confidence 2344667888885555554444 677888776554
No 234
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.08 E-value=3.7e-10 Score=103.68 Aligned_cols=171 Identities=23% Similarity=0.326 Sum_probs=131.0
Q ss_pred EEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEe-cCCCCceEEE
Q 018235 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF-GGHKDEGYAI 235 (359)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l 235 (359)
+..++-+|.|+||.|.|+..| .+++|+++|..|.+||... .++...| .||...|+.-
T Consensus 134 l~~kL~~H~GcVntV~FN~~G-d~l~SgSDD~~vv~WdW~~---------------------~~~~l~f~SGH~~NvfQa 191 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRG-DVLASGSDDLQVVVWDWVS---------------------GSPKLSFESGHCNNVFQA 191 (559)
T ss_pred hhhcccCCCCccceeeecccC-ceeeccCccceEEeehhhc---------------------cCcccccccccccchhhh
Confidence 446777999999999999999 8999999999999999987 3444443 5788888877
Q ss_pred EeCCCCC-CeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceE
Q 018235 236 DWNPITT-GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALT 314 (359)
Q Consensus 236 ~~sp~~~-~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~ 314 (359)
.|-|... .-+++++.||.+++=.+...+... ....+..|.++|.-++.-|..++.|.||+.|+.+.-+|+|.. .+..
T Consensus 192 KFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e-~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~-~pa~ 269 (559)
T KOG1334|consen 192 KFIPFSGDRTIVTSSRDGQVRVSEILETGYVE-NTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQD-VPAE 269 (559)
T ss_pred hccCCCCCcCceeccccCceeeeeecccccee-cceecccccCccceeeecCCCCCcccccccccceeeeeeccC-Cccc
Confidence 7776532 269999999999988776533322 224466799999999999999999999999999999999987 3322
Q ss_pred Ee---ecCCC---CEEEEEEcCCCC-eEEEEeeecccceEEEEEeCcC
Q 018235 315 SF---KAHNA---DVNVISWNRCWL-AVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 315 ~~---~~h~~---~V~~i~~s~~~~-~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
.+ .++.. ..+.|+.+|.+. .++.+.. +..++++|.++
T Consensus 270 ~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~----dqf~RvYD~R~ 313 (559)
T KOG1334|consen 270 KFVCREADEKERVGLYTIAVDPRNTNEFAVGGS----DQFARVYDQRR 313 (559)
T ss_pred eeeeeccCCccceeeeeEecCCCCccccccCCh----hhhhhhhcccc
Confidence 22 33444 578899999887 4444433 77788887664
No 235
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.08 E-value=2.2e-09 Score=106.67 Aligned_cols=120 Identities=18% Similarity=0.246 Sum_probs=101.4
Q ss_pred EEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCC
Q 018235 160 RKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (359)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp 239 (359)
.+.+|.|.|.++.++-++ .++||.|+|.++++|++.+. .....+.-+|+..++.+.+.|
T Consensus 170 ~l~GHeG~iF~i~~s~dg-~~i~s~SdDRsiRlW~i~s~--------------------~~~~~~~fgHsaRvw~~~~~~ 228 (967)
T KOG0974|consen 170 RLKGHEGSIFSIVTSLDG-RYIASVSDDRSIRLWPIDSR--------------------EVLGCTGFGHSARVWACCFLP 228 (967)
T ss_pred eecccCCceEEEEEccCC-cEEEEEecCcceeeeecccc--------------------cccCcccccccceeEEEEecc
Confidence 677999999999999999 89999999999999999982 222235558999999999999
Q ss_pred CCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCC-CCeEEEEecCCCCCEEEEEeCCCcEEEEECCCC
Q 018235 240 ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHS-ASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG 309 (359)
Q Consensus 240 ~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~-~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~ 309 (359)
. +++|++.|-+.++|+.+- ..+ ..+.+|. ..+..+..++... +.+|++.|+.+++||+...
T Consensus 229 n---~i~t~gedctcrvW~~~~-~~l----~~y~~h~g~~iw~~~~~~~~~-~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 229 N---RIITVGEDCTCRVWGVNG-TQL----EVYDEHSGKGIWKIAVPIGVI-IKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred c---eeEEeccceEEEEEeccc-cee----hhhhhhhhcceeEEEEcCCce-EEEeeccCcchhhhhhhcc
Confidence 7 799999999999997643 222 4677776 5788999988887 9999999999999998764
No 236
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.06 E-value=7e-09 Score=91.68 Aligned_cols=254 Identities=17% Similarity=0.194 Sum_probs=158.6
Q ss_pred HhhhhhcccccCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCC----CCC
Q 018235 56 AYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSN----DDE 131 (359)
Q Consensus 56 ~Y~~~~~~~~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~----~~~ 131 (359)
-+|+|-+..++-+-.-+.|+++..+ ..+++.| .+..|++||+..-...+.. .+.|... -..
T Consensus 74 EFDYLkSleieEKinkIrw~~~~n~---------a~FLlst-----NdktiKlWKi~er~~k~~~-~~~~~~~~~~~~~~ 138 (433)
T KOG1354|consen 74 EFDYLKSLEIEEKINKIRWLDDGNL---------AEFLLST-----NDKTIKLWKIRERGSKKEG-YNLPEEGPPGTITS 138 (433)
T ss_pred ccchhhhhhhhhhhhhceecCCCCc---------cEEEEec-----CCcceeeeeeecccccccc-ccccccCCCCccce
Confidence 3578888888889999999998632 3455566 3557999999643222210 0000000 000
Q ss_pred CCCCCCCCCCCCCCcccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccC
Q 018235 132 DVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQ 211 (359)
Q Consensus 132 d~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~ 211 (359)
- --.-+-..+... ...|.- .-.-+|+--||+|.++.+. ..+.+ ++|-.|.+|.+......+
T Consensus 139 l-----r~p~~~~~~~~v--ea~prR-v~aNaHtyhiNSIS~NsD~-Et~lS-ADdLRINLWnlei~d~sF--------- 199 (433)
T KOG1354|consen 139 L-----RLPVEGRHDLEV--EASPRR-VYANAHTYHINSISVNSDK-ETFLS-ADDLRINLWNLEIIDQSF--------- 199 (433)
T ss_pred e-----eceeecccccee--eeeeee-eccccceeEeeeeeecCcc-ceEee-ccceeeeeccccccCCce---------
Confidence 0 000000000000 001111 1123588999999999988 45555 678999999998732211
Q ss_pred CCCCCCCCCCcEEecCCC-----CceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCccee------------cCccccC
Q 018235 212 GAPQVSNQSPLVKFGGHK-----DEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNV------------DPNPFIG 274 (359)
Q Consensus 212 ~~~~~~~~~~~~~~~~h~-----~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~------------~~~~~~~ 274 (359)
.+.-++.+. .-|++-.|+|.....|+-.+..|+|+|.|+|+..-+.. ....|.+
T Consensus 200 ---------nIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffse 270 (433)
T KOG1354|consen 200 ---------NIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSE 270 (433)
T ss_pred ---------eEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHH
Confidence 112222332 34788899999888899899999999999995311110 0011223
Q ss_pred CCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCC---------------CEEEEEEcCCCCeEEEEe
Q 018235 275 HSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNA---------------DVNVISWNRCWLAVCWHL 339 (359)
Q Consensus 275 h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~---------------~V~~i~~s~~~~~l~~~~ 339 (359)
--++|.+++|+++|. ++++-.. -+|+|||+....+++.++..|.. +-..++|+-++..++++.
T Consensus 271 iIsSISDvKFs~sGr-yilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGs 348 (433)
T KOG1354|consen 271 IISSISDVKFSHSGR-YILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGS 348 (433)
T ss_pred HhhhhhceEEccCCc-EEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEeccc
Confidence 347899999999999 7776554 57999999776678888876632 225679999988888775
Q ss_pred eecccceEEEEEeCcCCcc
Q 018235 340 EVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 340 ~~~~~d~~i~iwd~~~g~v 358 (359)
- .+.+++++...|..
T Consensus 349 y----~n~frvf~~~~gsk 363 (433)
T KOG1354|consen 349 Y----NNVFRVFNLARGSK 363 (433)
T ss_pred c----cceEEEecCCCCcc
Confidence 4 78899999777764
No 237
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.05 E-value=5.3e-08 Score=93.75 Aligned_cols=167 Identities=13% Similarity=0.095 Sum_probs=104.1
Q ss_pred EecCCCceeeEEEeCCCCcEEEEEeCC--CcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 161 KVAHQGCVNRIRAMTQNPHICASWADT--GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 161 ~~~H~~~V~~i~~~p~~~~~lat~s~d--g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
+..+...+...+|+|++..++++...+ ..|.+|++.. +.. ..+........+..|+
T Consensus 194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~---------------------g~~-~~l~~~~g~~~~~~~S 251 (430)
T PRK00178 194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDT---------------------GRR-EQITNFEGLNGAPAWS 251 (430)
T ss_pred EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCC---------------------CCE-EEccCCCCCcCCeEEC
Confidence 346778899999999995554544333 4688889876 111 1122222334478999
Q ss_pred CCCCCeEE-EEcCCC--cEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCC--cEEEEECCCCCCce
Q 018235 239 PITTGRLV-TGDCNS--CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG--HIAIWDTRVGKSAL 313 (359)
Q Consensus 239 p~~~~~l~-sgs~dg--~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg--~I~iwD~r~~~~~~ 313 (359)
|++. .|+ +.+.+| .|++||+.+ +.. ..+..+........|+|++..++.+...+| .|.++|+.++ . .
T Consensus 252 pDG~-~la~~~~~~g~~~Iy~~d~~~-~~~----~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g-~-~ 323 (430)
T PRK00178 252 PDGS-KLAFVLSKDGNPEIYVMDLAS-RQL----SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGG-R-A 323 (430)
T ss_pred CCCC-EEEEEEccCCCceEEEEECCC-CCe----EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCC-C-E
Confidence 9998 554 565555 588888876 332 234455556677899999984444443444 4677777765 3 2
Q ss_pred EEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 314 TSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 314 ~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
..+...........|+|+|..+++..... ....|.+++..++..
T Consensus 324 ~~lt~~~~~~~~~~~Spdg~~i~~~~~~~-~~~~l~~~dl~tg~~ 367 (430)
T PRK00178 324 ERVTFVGNYNARPRLSADGKTLVMVHRQD-GNFHVAAQDLQRGSV 367 (430)
T ss_pred EEeecCCCCccceEECCCCCEEEEEEccC-CceEEEEEECCCCCE
Confidence 33322222334578999999998876432 234577888877653
No 238
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.02 E-value=3.8e-08 Score=94.30 Aligned_cols=166 Identities=14% Similarity=0.114 Sum_probs=107.1
Q ss_pred EecCCCceeeEEEeCCCCcEEEEEeCC--CcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 161 KVAHQGCVNRIRAMTQNPHICASWADT--GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 161 ~~~H~~~V~~i~~~p~~~~~lat~s~d--g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
+..+...+...+|+|++..++.+...+ ..|++||+.. ... ..+..+.....++.|+
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~---------------------g~~-~~~~~~~~~~~~~~~s 242 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLAT---------------------GQR-EKVASFPGMNGAPAFS 242 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCC---------------------CCE-EEeecCCCCccceEEC
Confidence 345677788999999995444443332 5799999876 221 2233344456679999
Q ss_pred CCCCCeEEEEcCCC--cEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEe-CCC--cEEEEECCCCCCce
Q 018235 239 PITTGRLVTGDCNS--CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS-VDG--HIAIWDTRVGKSAL 313 (359)
Q Consensus 239 p~~~~~l~sgs~dg--~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s-~Dg--~I~iwD~r~~~~~~ 313 (359)
|++..++++.+.++ .|++|++.+ +.. ..+..+.......+|+|++. .|+.++ ..+ .|.++|+.++ ..
T Consensus 243 pDg~~l~~~~~~~~~~~i~~~d~~~-~~~----~~l~~~~~~~~~~~~s~dg~-~l~~~s~~~g~~~iy~~d~~~~--~~ 314 (417)
T TIGR02800 243 PDGSKLAVSLSKDGNPDIYVMDLDG-KQL----TRLTNGPGIDTEPSWSPDGK-SIAFTSDRGGSPQIYMMDADGG--EV 314 (417)
T ss_pred CCCCEEEEEECCCCCccEEEEECCC-CCE----EECCCCCCCCCCEEECCCCC-EEEEEECCCCCceEEEEECCCC--CE
Confidence 99984455666555 488888876 322 23344445556779999998 554444 344 4777787765 33
Q ss_pred EEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 314 TSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 314 ~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
..+..+...+..+.|+|++.++++..... ....|.+|+..++.
T Consensus 315 ~~l~~~~~~~~~~~~spdg~~i~~~~~~~-~~~~i~~~d~~~~~ 357 (417)
T TIGR02800 315 RRLTFRGGYNASPSWSPDGDLIAFVHREG-GGFNIAVMDLDGGG 357 (417)
T ss_pred EEeecCCCCccCeEECCCCCEEEEEEccC-CceEEEEEeCCCCC
Confidence 44544556677889999999998876521 12367788876654
No 239
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.02 E-value=7e-08 Score=92.44 Aligned_cols=158 Identities=14% Similarity=0.164 Sum_probs=99.1
Q ss_pred cCCCceeeEEEeCCCCcEEEEEeCCC--cEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCC
Q 018235 163 AHQGCVNRIRAMTQNPHICASWADTG--HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI 240 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg--~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~ 240 (359)
.+.+.+..++|+|++..++++.+.++ .|++|++.. .....+..+........|+|+
T Consensus 231 ~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~----------------------~~~~~l~~~~~~~~~~~~s~d 288 (417)
T TIGR02800 231 SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDG----------------------KQLTRLTNGPGIDTEPSWSPD 288 (417)
T ss_pred cCCCCccceEECCCCCEEEEEECCCCCccEEEEECCC----------------------CCEEECCCCCCCCCCEEECCC
Confidence 45667778999999966666666555 477888765 112233334434456789999
Q ss_pred CCCeEEEE-cCCC--cEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCC---cEEEEECCCCCCceE
Q 018235 241 TTGRLVTG-DCNS--CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG---HIAIWDTRVGKSALT 314 (359)
Q Consensus 241 ~~~~l~sg-s~dg--~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg---~I~iwD~r~~~~~~~ 314 (359)
+. .|+.+ ...+ .|+++++.. +.. ..+..+...+..+.|+|++. .++.++.++ .|.+||+.++ . ..
T Consensus 289 g~-~l~~~s~~~g~~~iy~~d~~~-~~~----~~l~~~~~~~~~~~~spdg~-~i~~~~~~~~~~~i~~~d~~~~-~-~~ 359 (417)
T TIGR02800 289 GK-SIAFTSDRGGSPQIYMMDADG-GEV----RRLTFRGGYNASPSWSPDGD-LIAFVHREGGGFNIAVMDLDGG-G-ER 359 (417)
T ss_pred CC-EEEEEECCCCCceEEEEECCC-CCE----EEeecCCCCccCeEECCCCC-EEEEEEccCCceEEEEEeCCCC-C-eE
Confidence 98 66544 4344 477777765 332 23333455677889999998 666666655 7888998875 2 23
Q ss_pred EeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeC
Q 018235 315 SFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDC 353 (359)
Q Consensus 315 ~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~ 353 (359)
.+... ......+|+|++..|++...... ...+.+.+.
T Consensus 360 ~l~~~-~~~~~p~~spdg~~l~~~~~~~~-~~~l~~~~~ 396 (417)
T TIGR02800 360 VLTDT-GLDESPSFAPNGRMILYATTRGG-RGVLGLVST 396 (417)
T ss_pred EccCC-CCCCCceECCCCCEEEEEEeCCC-cEEEEEEEC
Confidence 33222 22345689999998888765322 234555553
No 240
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.01 E-value=1.4e-09 Score=101.34 Aligned_cols=178 Identities=16% Similarity=0.219 Sum_probs=127.7
Q ss_pred CeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEE
Q 018235 155 PILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYA 234 (359)
Q Consensus 155 ~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 234 (359)
.+-...+.+|+..|..|....+. +-+++++.|.+|++|.++...... ....+.++++.|+.+|+.
T Consensus 725 ~irL~nf~GH~~~iRai~AidNE-NSFiSASkDKTVKLWSik~EgD~~--------------~tsaCQfTY~aHkk~i~~ 789 (1034)
T KOG4190|consen 725 HIRLCNFTGHQEKIRAIAAIDNE-NSFISASKDKTVKLWSIKPEGDEI--------------GTSACQFTYQAHKKPIHD 789 (1034)
T ss_pred eeeeecccCcHHHhHHHHhcccc-cceeeccCCceEEEEEeccccCcc--------------ccceeeeEhhhccCcccc
Confidence 34446778999999988876655 788999999999999998732211 134578899999999999
Q ss_pred EEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCcccc-CCCCCeEEEEecCC--CCCEEEEEeCCCcEEEEECCCCCC
Q 018235 235 IDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFI-GHSASVEDLQWSPT--EPDVFASCSVDGHIAIWDTRVGKS 311 (359)
Q Consensus 235 l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~-~h~~~V~~v~~sp~--~~~~las~s~Dg~I~iwD~r~~~~ 311 (359)
+.|-.+.+ .++ ++||.|++||+-- +.++. +... ...+.+..+..-|+ ..-++|-|+...+|+++|.|.. .
T Consensus 790 igfL~~lr-~i~--ScD~giHlWDPFi-gr~La--q~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsc-e 862 (1034)
T KOG4190|consen 790 IGFLADLR-SIA--SCDGGIHLWDPFI-GRLLA--QMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSC-E 862 (1034)
T ss_pred eeeeeccc-eee--eccCcceeecccc-cchhH--hhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccc-c
Confidence 99987765 555 4589999999865 33331 1111 11233333333343 3325566689999999999987 4
Q ss_pred ceEEe-----ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 312 ALTSF-----KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 312 ~~~~~-----~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
-...+ .+.++-+.+|+..+.|..++.++. .++|.+.|.++|.|
T Consensus 863 ~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LS----nGci~~LDaR~G~v 910 (1034)
T KOG4190|consen 863 WTCELKVCNAPGPNALTRAIAVADKGNKLAAALS----NGCIAILDARNGKV 910 (1034)
T ss_pred ceeeEEeccCCCCchheeEEEeccCcchhhHHhc----CCcEEEEecCCCce
Confidence 33333 334567899999999999999887 78999999999985
No 241
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.01 E-value=7.4e-09 Score=103.09 Aligned_cols=159 Identities=15% Similarity=0.172 Sum_probs=113.9
Q ss_pred EEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcC
Q 018235 171 IRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDC 250 (359)
Q Consensus 171 i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~ 250 (359)
+.|..+..+++++ ++...|+|||.... ....-.-.+....+++|.-+....++++.|-.
T Consensus 1171 ~dWqQ~~G~Ll~t-Gd~r~IRIWDa~~E--------------------~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfa 1229 (1387)
T KOG1517|consen 1171 VDWQQQSGHLLVT-GDVRSIRIWDAHKE--------------------QVVADIPYGSSTLVTALSADLVHGNIIAAGFA 1229 (1387)
T ss_pred eehhhhCCeEEec-CCeeEEEEEecccc--------------------eeEeecccCCCccceeecccccCCceEEEeec
Confidence 4566655455555 55889999999872 12222223344567888776665459999999
Q ss_pred CCcEEEEecCCCCcceecCccccCCCCC--eEEEEecCCCCCEEEEEeCCCcEEEEECCCC-CCceEEeecCC---CCEE
Q 018235 251 NSCIYLWEPASDATWNVDPNPFIGHSAS--VEDLQWSPTEPDVFASCSVDGHIAIWDTRVG-KSALTSFKAHN---ADVN 324 (359)
Q Consensus 251 dg~I~lwd~~~~~~~~~~~~~~~~h~~~--V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~-~~~~~~~~~h~---~~V~ 324 (359)
||.|++||.|.... -.....+..|... |..+.+-+.|-.-|++|+.||.|++||+|.. ......+..|- +.++
T Consensus 1230 DGsvRvyD~R~a~~-ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lT 1308 (1387)
T KOG1517|consen 1230 DGSVRVYDRRMAPP-DSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALT 1308 (1387)
T ss_pred CCceEEeecccCCc-cccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccce
Confidence 99999999987322 1113556778876 9999999988756999999999999999994 23334444443 3599
Q ss_pred EEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 325 VISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 325 ~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
++..+++..+++.+.. ..|+||+....
T Consensus 1309 al~VH~hapiiAsGs~-----q~ikIy~~~G~ 1335 (1387)
T KOG1517|consen 1309 ALTVHEHAPIIASGSA-----QLIKIYSLSGE 1335 (1387)
T ss_pred eeeeccCCCeeeecCc-----ceEEEEecChh
Confidence 9999999999887753 56999987643
No 242
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.00 E-value=5.8e-08 Score=91.44 Aligned_cols=143 Identities=12% Similarity=0.062 Sum_probs=115.8
Q ss_pred CcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEe--cCCCCceEEEEeCCCCCCeEEEEcCCCcEE
Q 018235 178 PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF--GGHKDEGYAIDWNPITTGRLVTGDCNSCIY 255 (359)
Q Consensus 178 ~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~ 255 (359)
...+|-|...|.|.+|+... ++....+ .+|-+.+.++.|+..-. .|.|++.|+.+.
T Consensus 70 t~~lvlgt~~g~v~~ys~~~---------------------g~it~~~st~~h~~~v~~~~~~~~~~-ciyS~~ad~~v~ 127 (541)
T KOG4547|consen 70 TSMLVLGTPQGSVLLYSVAG---------------------GEITAKLSTDKHYGNVNEILDAQRLG-CIYSVGADLKVV 127 (541)
T ss_pred ceEEEeecCCccEEEEEecC---------------------CeEEEEEecCCCCCcceeeecccccC-ceEecCCceeEE
Confidence 35788889999999999887 3433444 46888999999998876 999999999999
Q ss_pred EEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCC----
Q 018235 256 LWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRC---- 331 (359)
Q Consensus 256 lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~---- 331 (359)
.|+... .... +.+.+.+..+..++.+|++. ++++++ +.|++||+.+. +.+..|.+|.++|++++|--.
T Consensus 128 ~~~~~~-~~~~---~~~~~~~~~~~sl~is~D~~-~l~~as--~~ik~~~~~~k-evv~~ftgh~s~v~t~~f~~~~~g~ 199 (541)
T KOG4547|consen 128 YILEKE-KVII---RIWKEQKPLVSSLCISPDGK-ILLTAS--RQIKVLDIETK-EVVITFTGHGSPVRTLSFTTLIDGI 199 (541)
T ss_pred EEeccc-ceee---eeeccCCCccceEEEcCCCC-EEEecc--ceEEEEEccCc-eEEEEecCCCcceEEEEEEEecccc
Confidence 999976 4433 67778889999999999998 888777 68999999998 888999999999999999887
Q ss_pred -CCeEEEEeeecccceEEEEEeC
Q 018235 332 -WLAVCWHLEVMMEHFLFMILDC 353 (359)
Q Consensus 332 -~~~l~~~~~~~~~d~~i~iwd~ 353 (359)
|.+++..... ...+.+|-.
T Consensus 200 ~G~~vLssa~~---~r~i~~w~v 219 (541)
T KOG4547|consen 200 IGKYVLSSAAA---ERGITVWVV 219 (541)
T ss_pred ccceeeecccc---ccceeEEEE
Confidence 6777665442 344556643
No 243
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.95 E-value=8.4e-08 Score=90.35 Aligned_cols=146 Identities=18% Similarity=0.175 Sum_probs=120.6
Q ss_pred eEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCeEEEEE--ecCCC
Q 018235 89 TAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRK--VAHQG 166 (359)
Q Consensus 89 ~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~H~~ 166 (359)
+..+++|| .+..|.++++. ...+..++ -.|.+
T Consensus 70 t~~lvlgt-----~~g~v~~ys~~-----------------------------------------~g~it~~~st~~h~~ 103 (541)
T KOG4547|consen 70 TSMLVLGT-----PQGSVLLYSVA-----------------------------------------GGEITAKLSTDKHYG 103 (541)
T ss_pred ceEEEeec-----CCccEEEEEec-----------------------------------------CCeEEEEEecCCCCC
Confidence 57899999 46688888883 33344333 36999
Q ss_pred ceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEE
Q 018235 167 CVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLV 246 (359)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~ 246 (359)
.|+++.++.+- ..|.|++.|+.|..|+... ....+.+.+....+.+++.+|++. .|+
T Consensus 104 ~v~~~~~~~~~-~ciyS~~ad~~v~~~~~~~---------------------~~~~~~~~~~~~~~~sl~is~D~~-~l~ 160 (541)
T KOG4547|consen 104 NVNEILDAQRL-GCIYSVGADLKVVYILEKE---------------------KVIIRIWKEQKPLVSSLCISPDGK-ILL 160 (541)
T ss_pred cceeeeccccc-CceEecCCceeEEEEeccc---------------------ceeeeeeccCCCccceEEEcCCCC-EEE
Confidence 99999988776 7899999999999999987 566778888888899999999987 898
Q ss_pred EEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCC-----CCCEEEEEeCCCcEEEEECCCC
Q 018235 247 TGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPT-----EPDVFASCSVDGHIAIWDTRVG 309 (359)
Q Consensus 247 sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~-----~~~~las~s~Dg~I~iwD~r~~ 309 (359)
+++ +.|++||+.+ .+.+ ..|.||.+.|++++|--. |.++|.+......|.+|-++..
T Consensus 161 ~as--~~ik~~~~~~-kevv---~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~ 222 (541)
T KOG4547|consen 161 TAS--RQIKVLDIET-KEVV---ITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKE 222 (541)
T ss_pred ecc--ceEEEEEccC-ceEE---EEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcc
Confidence 886 7899999987 5554 789999999999999877 7767888888888999977763
No 244
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.95 E-value=1.7e-09 Score=103.78 Aligned_cols=163 Identities=22% Similarity=0.324 Sum_probs=125.9
Q ss_pred ceeeEEEeCCC--CcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCe
Q 018235 167 CVNRIRAMTQN--PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGR 244 (359)
Q Consensus 167 ~V~~i~~~p~~--~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~ 244 (359)
.|-.+.|+|+. +..+++.+. ..-.||++.... ....-+.+.||+..++.+.|+|+.+-.
T Consensus 69 ~vad~qws~h~a~~~wiVsts~-qkaiiwnlA~ss------------------~~aIef~lhghsraitd~n~~~q~pdV 129 (1081)
T KOG0309|consen 69 QVADVQWSPHPAKPYWIVSTSN-QKAIIWNLAKSS------------------SNAIEFVLHGHSRAITDINFNPQHPDV 129 (1081)
T ss_pred hhcceecccCCCCceeEEecCc-chhhhhhhhcCC------------------ccceEEEEecCccceeccccCCCCCcc
Confidence 45566777765 456666554 455689988732 133456788999999999999999999
Q ss_pred EEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEE
Q 018235 245 LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVN 324 (359)
Q Consensus 245 l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~ 324 (359)
|++++.|..++.||+++...+. ..+..-......|.|+-..++++|+ +..+.|++||+|.+..++..+++|.+.|+
T Consensus 130 latcsvdt~vh~wd~rSp~~p~---ys~~~w~s~asqVkwnyk~p~vlas-shg~~i~vwd~r~gs~pl~s~K~~vs~vn 205 (1081)
T KOG0309|consen 130 LATCSVDTYVHAWDMRSPHRPF---YSTSSWRSAASQVKWNYKDPNVLAS-SHGNDIFVWDLRKGSTPLCSLKGHVSSVN 205 (1081)
T ss_pred eeeccccccceeeeccCCCcce---eeeecccccCceeeecccCcchhhh-ccCCceEEEeccCCCcceEEecccceeee
Confidence 9999999999999999865544 2222223455679999988856654 55567999999999889999999999999
Q ss_pred EEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 325 VISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 325 ~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
.+.|+..-...++...+ +++++.|+...
T Consensus 206 ~~~fnr~~~s~~~s~~~---d~tvkfw~y~k 233 (1081)
T KOG0309|consen 206 SIDFNRFKYSEIMSSSN---DGTVKFWDYSK 233 (1081)
T ss_pred hHHHhhhhhhhhcccCC---CCceeeecccc
Confidence 99999987777777765 89999998654
No 245
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.92 E-value=4.9e-09 Score=109.15 Aligned_cols=155 Identities=17% Similarity=0.230 Sum_probs=117.1
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceE
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (359)
.++...+..+. ..|++++|+.+| +.+..+..||.+.+|.... +|....+.|.....
T Consensus 2241 ~~v~~~rt~g~-s~vtr~~f~~qG-nk~~i~d~dg~l~l~q~~p----------------------k~~~s~qchnk~~~ 2296 (2439)
T KOG1064|consen 2241 QQVVCFRTAGN-SRVTRSRFNHQG-NKFGIVDGDGDLSLWQASP----------------------KPYTSWQCHNKALS 2296 (2439)
T ss_pred CeEEEeeccCc-chhhhhhhcccC-CceeeeccCCceeecccCC----------------------cceeccccCCcccc
Confidence 44555555555 899999999999 7888889999999999874 77788888988877
Q ss_pred EEEeCCCCCCeEEEEc---CCCcEEEEecCCCC-cceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCC
Q 018235 234 AIDWNPITTGRLVTGD---CNSCIYLWEPASDA-TWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG 309 (359)
Q Consensus 234 ~l~~sp~~~~~l~sgs---~dg~I~lwd~~~~~-~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~ 309 (359)
.+.|-- . .+++++ .++.+++||..-.. .+.+ -..|.+.++++++-|..+ +|+||+.+|-|+|||+|..
T Consensus 2297 Df~Fi~--s-~~~tag~s~d~~n~~lwDtl~~~~~s~v----~~~H~~gaT~l~~~P~~q-llisggr~G~v~l~D~rqr 2368 (2439)
T KOG1064|consen 2297 DFRFIG--S-LLATAGRSSDNRNVCLWDTLLPPMNSLV----HTCHDGGATVLAYAPKHQ-LLISGGRKGEVCLFDIRQR 2368 (2439)
T ss_pred ceeeee--h-hhhccccCCCCCcccchhcccCccccee----eeecCCCceEEEEcCcce-EEEecCCcCcEEEeehHHH
Confidence 777754 3 666653 46789999986533 3332 278999999999999999 9999999999999999986
Q ss_pred CCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 310 KSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 310 ~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
+..+++++ |. ...+++.+.. .+.++||+...
T Consensus 2369 -ql~h~~~~---------~~-~~~~f~~~ss----~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2369 -QLRHTFQA---------LD-TREYFVTGSS----EGNIKIWRLSE 2399 (2439)
T ss_pred -HHHHHhhh---------hh-hhheeeccCc----ccceEEEEccc
Confidence 55555543 44 3445555544 56678887653
No 246
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.91 E-value=3.6e-07 Score=88.32 Aligned_cols=167 Identities=12% Similarity=0.075 Sum_probs=101.3
Q ss_pred EecCCCceeeEEEeCCCCcEEEEEeCCC--cEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 161 KVAHQGCVNRIRAMTQNPHICASWADTG--HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 161 ~~~H~~~V~~i~~~p~~~~~lat~s~dg--~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
+..+...+...+|+|++..++.+...++ .|++||+.... ...+..+.+ ...+..|+
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~-------------------~~~lt~~~g---~~~~~~wS 270 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQV-------------------REKVTSFPG---INGAPRFS 270 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCC-------------------eEEecCCCC---CcCCeeEC
Confidence 3456778999999999965555544444 57778876510 111222222 23478999
Q ss_pred CCCCCeEEEEcCCCc--EEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCc--EEEEECCCCCCceE
Q 018235 239 PITTGRLVTGDCNSC--IYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGH--IAIWDTRVGKSALT 314 (359)
Q Consensus 239 p~~~~~l~sgs~dg~--I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~--I~iwD~r~~~~~~~ 314 (359)
|++..++++.+.+|. |+++|+.. +.. ..+..+.......+|+|++..++.+...++. |.++|+.++ . ..
T Consensus 271 PDG~~La~~~~~~g~~~Iy~~dl~t-g~~----~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g-~-~~ 343 (448)
T PRK04792 271 PDGKKLALVLSKDGQPEIYVVDIAT-KAL----TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASG-K-VS 343 (448)
T ss_pred CCCCEEEEEEeCCCCeEEEEEECCC-CCe----EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC-C-EE
Confidence 999844455666775 67778765 332 2344455566788999999955555544444 556677665 2 33
Q ss_pred EeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 315 SFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 315 ~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
.+..........+|+|+|+.+++.... .....|.+++..++.
T Consensus 344 ~Lt~~g~~~~~~~~SpDG~~l~~~~~~-~g~~~I~~~dl~~g~ 385 (448)
T PRK04792 344 RLTFEGEQNLGGSITPDGRSMIMVNRT-NGKFNIARQDLETGA 385 (448)
T ss_pred EEecCCCCCcCeeECCCCCEEEEEEec-CCceEEEEEECCCCC
Confidence 332222233457999999998876542 112345556766654
No 247
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.90 E-value=3e-07 Score=88.85 Aligned_cols=158 Identities=15% Similarity=0.161 Sum_probs=92.1
Q ss_pred CceeeEEEeCCCCcEEEEEeCCCc--EEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCC
Q 018235 166 GCVNRIRAMTQNPHICASWADTGH--VQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (359)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~--V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~ 243 (359)
+.....+|+|++..++++.+.+|. |+++|+.. .....+..+.......+|+|++..
T Consensus 262 g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~t----------------------g~~~~lt~~~~~~~~p~wSpDG~~ 319 (448)
T PRK04792 262 GINGAPRFSPDGKKLALVLSKDGQPEIYVVDIAT----------------------KALTRITRHRAIDTEPSWHPDGKS 319 (448)
T ss_pred CCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCC----------------------CCeEECccCCCCccceEECCCCCE
Confidence 344578999999667777777776 56666654 122334444445667899999984
Q ss_pred eEEEEcCCCc--EEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCc--EEEEECCCCCCceEEeecC
Q 018235 244 RLVTGDCNSC--IYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGH--IAIWDTRVGKSALTSFKAH 319 (359)
Q Consensus 244 ~l~sgs~dg~--I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~--I~iwD~r~~~~~~~~~~~h 319 (359)
++++...++. |+++++.. ++... .++.++ .....+|+|++..++++...++. |.++|+.++ . ...+...
T Consensus 320 I~f~s~~~g~~~Iy~~dl~~-g~~~~--Lt~~g~--~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g-~-~~~lt~~ 392 (448)
T PRK04792 320 LIFTSERGGKPQIYRVNLAS-GKVSR--LTFEGE--QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETG-A-MQVLTST 392 (448)
T ss_pred EEEEECCCCCceEEEEECCC-CCEEE--EecCCC--CCcCeeECCCCCEEEEEEecCCceEEEEEECCCC-C-eEEccCC
Confidence 4455544554 55556654 33221 112222 23456899999944454444554 455677765 2 2333222
Q ss_pred CCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 320 NADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 320 ~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
. .....+|+|+|+.+++..... ....+.+++..
T Consensus 393 ~-~d~~ps~spdG~~I~~~~~~~-g~~~l~~~~~~ 425 (448)
T PRK04792 393 R-LDESPSVAPNGTMVIYSTTYQ-GKQVLAAVSID 425 (448)
T ss_pred C-CCCCceECCCCCEEEEEEecC-CceEEEEEECC
Confidence 1 123458999999998876532 22346666653
No 248
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.88 E-value=5.5e-07 Score=86.73 Aligned_cols=158 Identities=16% Similarity=0.129 Sum_probs=93.6
Q ss_pred CCceeeEEEeCCCCcEEEEEeCCC--cEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCC
Q 018235 165 QGCVNRIRAMTQNPHICASWADTG--HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (359)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg--~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~ 242 (359)
.+.+...+|+|++..++++.+.+| .|++||+.. .....+..+........|+|++.
T Consensus 242 ~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~----------------------~~~~~lt~~~~~~~~~~~spDg~ 299 (430)
T PRK00178 242 EGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLAS----------------------RQLSRVTNHPAIDTEPFWGKDGR 299 (430)
T ss_pred CCCcCCeEECCCCCEEEEEEccCCCceEEEEECCC----------------------CCeEEcccCCCCcCCeEECCCCC
Confidence 345557899999966666666666 577778765 12233444444556789999998
Q ss_pred CeEEEEcCCC--cEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEe-CCC--cEEEEECCCCCCceEEee
Q 018235 243 GRLVTGDCNS--CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS-VDG--HIAIWDTRVGKSALTSFK 317 (359)
Q Consensus 243 ~~l~sgs~dg--~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s-~Dg--~I~iwD~r~~~~~~~~~~ 317 (359)
.++++...+| .|+++++.. +.... ..+.+ .......|+|++. .++..+ .++ .|.+||+.++ . ...+.
T Consensus 300 ~i~f~s~~~g~~~iy~~d~~~-g~~~~--lt~~~--~~~~~~~~Spdg~-~i~~~~~~~~~~~l~~~dl~tg-~-~~~lt 371 (430)
T PRK00178 300 TLYFTSDRGGKPQIYKVNVNG-GRAER--VTFVG--NYNARPRLSADGK-TLVMVHRQDGNFHVAAQDLQRG-S-VRILT 371 (430)
T ss_pred EEEEEECCCCCceEEEEECCC-CCEEE--eecCC--CCccceEECCCCC-EEEEEEccCCceEEEEEECCCC-C-EEEcc
Confidence 4444544444 466777755 33221 11222 2234578999999 555444 343 4788898876 2 23332
Q ss_pred cCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 318 AHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 318 ~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
+.......+|+|+|+.+++.....+ ...|.+++..
T Consensus 372 -~~~~~~~p~~spdg~~i~~~~~~~g-~~~l~~~~~~ 406 (430)
T PRK00178 372 -DTSLDESPSVAPNGTMLIYATRQQG-RGVLMLVSIN 406 (430)
T ss_pred -CCCCCCCceECCCCCEEEEEEecCC-ceEEEEEECC
Confidence 1222235689999999988765322 2345566554
No 249
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=3.8e-08 Score=89.16 Aligned_cols=143 Identities=17% Similarity=0.145 Sum_probs=97.7
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCcc--ccc--cccc-c--ccCCCCC---C-------CCCC-
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLN--ALA--ESET-I--VGQGAPQ---V-------SNQS- 220 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~--~~~--~~~~-~--~~~~~~~---~-------~~~~- 220 (359)
...+.|.+.|.++.|+|++ .++|+-+.+ ..+||+...... ... .... . .++..+. . .+..
T Consensus 180 l~e~~~~~eV~DL~FS~dg-k~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~ 257 (398)
T KOG0771|consen 180 LEEIAHHAEVKDLDFSPDG-KFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGG 257 (398)
T ss_pred hhhHhhcCccccceeCCCC-cEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCc
Confidence 3455899999999999999 789998888 999999987411 000 0000 0 0000000 0 0000
Q ss_pred ---------------CcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEec
Q 018235 221 ---------------PLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWS 285 (359)
Q Consensus 221 ---------------~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~s 285 (359)
+.+........|.+|+.+.+|+ ++|.|+.+|.|.|++...- +.+ ...-..|...|+.|.|+
T Consensus 258 v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGk-f~AlGT~dGsVai~~~~~l-q~~--~~vk~aH~~~VT~ltF~ 333 (398)
T KOG0771|consen 258 VRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGK-FLALGTMDGSVAIYDAKSL-QRL--QYVKEAHLGFVTGLTFS 333 (398)
T ss_pred eeEEEeeeeccccccchhhhhhccCcceeEEEcCCCc-EEEEeccCCcEEEEEecee-eee--EeehhhheeeeeeEEEc
Confidence 1111111123689999999999 9999999999999998763 222 13345799999999999
Q ss_pred CCCCCEEEEEeCCCcEEEEECCC
Q 018235 286 PTEPDVFASCSVDGHIAIWDTRV 308 (359)
Q Consensus 286 p~~~~~las~s~Dg~I~iwD~r~ 308 (359)
|+.. .+++.+.+..++|.-+..
T Consensus 334 Pdsr-~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 334 PDSR-YLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CCcC-cccccccCCceeEEEEee
Confidence 9988 888999998888876654
No 250
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.86 E-value=1.3e-08 Score=90.05 Aligned_cols=185 Identities=15% Similarity=0.161 Sum_probs=121.1
Q ss_pred CCCceeeEEEeCCC-CcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCC--------------CCCCCcEEe-cC
Q 018235 164 HQGCVNRIRAMTQN-PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQV--------------SNQSPLVKF-GG 227 (359)
Q Consensus 164 H~~~V~~i~~~p~~-~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~-~~ 227 (359)
-...|+.|+|.+++ ...+...+.|.+|++|.+....................+ -...|.+++ .+
T Consensus 83 ieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNa 162 (433)
T KOG1354|consen 83 IEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANA 162 (433)
T ss_pred hhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeecccc
Confidence 35679999999877 345666688999999998764333211111111000000 112333444 35
Q ss_pred CCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcc--eecCcc--ccCCCCCeEEEEecCCCCCEEEEEeCCCcEEE
Q 018235 228 HKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATW--NVDPNP--FIGHSASVEDLQWSPTEPDVFASCSVDGHIAI 303 (359)
Q Consensus 228 h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~--~~~~~~--~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~i 303 (359)
|.--|.+|+++.+.+ .++|++ |=.|.||.+.-..+. ++++.+ +..-+.-|++..|||..-++|+-.+..|+|||
T Consensus 163 HtyhiNSIS~NsD~E-t~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrL 240 (433)
T KOG1354|consen 163 HTYHINSISVNSDKE-TFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRL 240 (433)
T ss_pred ceeEeeeeeecCccc-eEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEE
Confidence 777899999999998 888886 889999998653221 111111 22234567888999999889999999999999
Q ss_pred EECCCCCCc-----eEEe----------ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 304 WDTRVGKSA-----LTSF----------KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 304 wD~r~~~~~-----~~~~----------~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
.|+|...-| +... ..--+.|..+.|++.|++++... -.++++||.+.
T Consensus 241 cDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-----yltvk~wD~nm 302 (433)
T KOG1354|consen 241 CDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-----YLTVKLWDLNM 302 (433)
T ss_pred eechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-----cceeEEEeccc
Confidence 999964111 1111 11123578899999999998763 35799999854
No 251
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.84 E-value=4.3e-07 Score=78.07 Aligned_cols=99 Identities=14% Similarity=0.109 Sum_probs=78.1
Q ss_pred eEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCC
Q 018235 232 GYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS 311 (359)
Q Consensus 232 v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~ 311 (359)
.+++..++++. ++++.+....|.+|.+...+..+.. ......+..--+.+|+.... .||++..||++.|||+|....
T Consensus 161 ~ns~~~snd~~-~~~~Vgds~~Vf~y~id~~sey~~~-~~~a~t~D~gF~~S~s~~~~-~FAv~~Qdg~~~I~DVR~~~t 237 (344)
T KOG4532|consen 161 QNSLHYSNDPS-WGSSVGDSRRVFRYAIDDESEYIEN-IYEAPTSDHGFYNSFSENDL-QFAVVFQDGTCAIYDVRNMAT 237 (344)
T ss_pred eeeeEEcCCCc-eEEEecCCCcceEEEeCCccceeee-eEecccCCCceeeeeccCcc-eEEEEecCCcEEEEEeccccc
Confidence 78899999998 8999998999999999876655532 12222344556789998888 999999999999999998755
Q ss_pred ceEEe----ecCCCCEEEEEEcCCCC
Q 018235 312 ALTSF----KAHNADVNVISWNRCWL 333 (359)
Q Consensus 312 ~~~~~----~~h~~~V~~i~~s~~~~ 333 (359)
++... ..|++.+..+.|++.|.
T Consensus 238 pm~~~sstrp~hnGa~R~c~Fsl~g~ 263 (344)
T KOG4532|consen 238 PMAEISSTRPHHNGAFRVCRFSLYGL 263 (344)
T ss_pred chhhhcccCCCCCCceEEEEecCCCc
Confidence 55443 46899999999998775
No 252
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.76 E-value=2.4e-06 Score=82.07 Aligned_cols=167 Identities=9% Similarity=0.064 Sum_probs=97.0
Q ss_pred CCCceeeEEEeCCCCc--EEEEEeCCC--cEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCC
Q 018235 164 HQGCVNRIRAMTQNPH--ICASWADTG--HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (359)
Q Consensus 164 H~~~V~~i~~~p~~~~--~lat~s~dg--~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp 239 (359)
..+.+..-+|+|+|.. ++++...+| .|++.++... ....+..+ ........|||
T Consensus 183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g-------------------~~~~lt~~---~g~~~~p~wSP 240 (428)
T PRK01029 183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENP-------------------AGKKILAL---QGNQLMPTFSP 240 (428)
T ss_pred CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCC-------------------CceEeecC---CCCccceEECC
Confidence 4556677799999854 333444444 4666676651 11222223 33445789999
Q ss_pred CCCCeEE-EEcCCC----cEEEEecCCC--CcceecCcccc-CCCCCeEEEEecCCCCCEEEEEeCCCcEEEEE--CCCC
Q 018235 240 ITTGRLV-TGDCNS----CIYLWEPASD--ATWNVDPNPFI-GHSASVEDLQWSPTEPDVFASCSVDGHIAIWD--TRVG 309 (359)
Q Consensus 240 ~~~~~l~-sgs~dg----~I~lwd~~~~--~~~~~~~~~~~-~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD--~r~~ 309 (359)
+|. .|+ +.+.+| .+.+|++..+ +.. ..+. ++.......+|+|+|..++.+...+|...||. +...
T Consensus 241 DG~-~Laf~s~~~g~~di~~~~~~~~~g~~g~~----~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~ 315 (428)
T PRK01029 241 RKK-LLAFISDRYGNPDLFIQSFSLETGAIGKP----RRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPE 315 (428)
T ss_pred CCC-EEEEEECCCCCcceeEEEeecccCCCCcc----eEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccc
Confidence 998 555 443333 3344666542 121 1222 22234567899999994444444567656664 4322
Q ss_pred CCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 310 KSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 310 ~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
......+..+...+....|+|+|+.|++..... ....|.+|+..++++
T Consensus 316 g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~-g~~~I~v~dl~~g~~ 363 (428)
T PRK01029 316 GQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIK-GVRQICVYDLATGRD 363 (428)
T ss_pred ccceEEeccCCCCccceeECCCCCEEEEEEcCC-CCcEEEEEECCCCCe
Confidence 123344444555677889999999998875432 235688899887754
No 253
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.76 E-value=1.3e-07 Score=83.77 Aligned_cols=86 Identities=20% Similarity=0.275 Sum_probs=74.6
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceE
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (359)
...+..++.+|.++|.++.|.+.. .++.+|..|..|.+||+.. .......+.+|...+.
T Consensus 186 ~~~~i~~~~~h~~~~~~l~Wd~~~-~~LfSg~~d~~vi~wdigg--------------------~~g~~~el~gh~~kV~ 244 (404)
T KOG1409|consen 186 GCQLITTFNGHTGEVTCLKWDPGQ-RLLFSGASDHSVIMWDIGG--------------------RKGTAYELQGHNDKVQ 244 (404)
T ss_pred CCceEEEEcCcccceEEEEEcCCC-cEEEeccccCceEEEeccC--------------------Ccceeeeeccchhhhh
Confidence 344557788999999999999977 8999999999999999987 2345577889999999
Q ss_pred EEEeCCCCCCeEEEEcCCCcEEEEecCC
Q 018235 234 AIDWNPITTGRLVTGDCNSCIYLWEPAS 261 (359)
Q Consensus 234 ~l~~sp~~~~~l~sgs~dg~I~lwd~~~ 261 (359)
++...+... +|.|++.||.|.+|+++.
T Consensus 245 ~l~~~~~t~-~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 245 ALSYAQHTR-QLISCGEDGGIVVWNMNV 271 (404)
T ss_pred hhhhhhhhe-eeeeccCCCeEEEEeccc
Confidence 999988887 999999999999999974
No 254
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.72 E-value=3.5e-08 Score=84.30 Aligned_cols=149 Identities=15% Similarity=0.181 Sum_probs=97.6
Q ss_pred cEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcC-----CCc
Q 018235 179 HICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDC-----NSC 253 (359)
Q Consensus 179 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~-----dg~ 253 (359)
+-++++..||.+.+++.+...... ...+.. |. .-.+.+....++ .+.++.+ -+.
T Consensus 102 t~V~~~~~dg~~~v~s~~~~~~~~---------------~~i~~~----~~-~~as~~~~~~~~-~i~s~~~g~~n~~d~ 160 (319)
T KOG4714|consen 102 NRVCIGYADGSLAVFSTDKDLALM---------------SRIPSI----HS-GSASRKICRHGN-SILSGGCGNWNAQDN 160 (319)
T ss_pred CceEecCCCceEEEEechHHHhhh---------------hhcccc----cc-cccccceeeccc-EEecCCcceEeeccc
Confidence 578999999999999987621111 011111 11 111222333333 3333321 234
Q ss_pred EEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCC
Q 018235 254 IYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWL 333 (359)
Q Consensus 254 I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~ 333 (359)
.+.|+++....... ....-..|.+++-+|..++++++|+.||.+-|||.|....++..+.+|.++|+.+-|+|.+.
T Consensus 161 ~~a~~~~p~~t~~~----~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p 236 (319)
T KOG4714|consen 161 FYANTLDPIKTLIP----SKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNP 236 (319)
T ss_pred eeeecccccccccc----cccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCc
Confidence 56677665332221 11112349999999999989999999999999999998567777799999999999999876
Q ss_pred eEEEEeeecccceEEEEEeCcC
Q 018235 334 AVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 334 ~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
--++.+.. ++.+-.||.++
T Consensus 237 ~~Lft~se---dGslw~wdas~ 255 (319)
T KOG4714|consen 237 EHLFTCSE---DGSLWHWDAST 255 (319)
T ss_pred hheeEecC---CCcEEEEcCCC
Confidence 55555543 88888998874
No 255
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.70 E-value=4.1e-08 Score=86.94 Aligned_cols=146 Identities=16% Similarity=0.197 Sum_probs=104.1
Q ss_pred CCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCC
Q 018235 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (359)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~ 243 (359)
-++.|.++.|...+ +++..|..+|.|...|++...+. ...+...+ .|...+++|..-.....
T Consensus 251 sksDVfAlQf~~s~-nLv~~GcRngeI~~iDLR~rnqG----------------~~~~a~rl-yh~Ssvtslq~Lq~s~q 312 (425)
T KOG2695|consen 251 SKSDVFALQFAGSD-NLVFNGCRNGEIFVIDLRCRNQG----------------NGWCAQRL-YHDSSVTSLQILQFSQQ 312 (425)
T ss_pred cchhHHHHHhcccC-CeeEecccCCcEEEEEeeecccC----------------CCcceEEE-EcCcchhhhhhhccccc
Confidence 44678888888777 78999999999999999873111 13444444 57788888887663334
Q ss_pred eEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEE--EEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEee----
Q 018235 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVED--LQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK---- 317 (359)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~--v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~---- 317 (359)
+|++.+.+|.|++||.|. -+..+.++.+.||...-.- +-.++.+. ++++++.|...|||.++.+ ..+.++.
T Consensus 313 ~LmaS~M~gkikLyD~R~-~K~~~~V~qYeGHvN~~a~l~~~v~~eeg-~I~s~GdDcytRiWsl~~g-hLl~tipf~~s 389 (425)
T KOG2695|consen 313 KLMASDMTGKIKLYDLRA-TKCKKSVMQYEGHVNLSAYLPAHVKEEEG-SIFSVGDDCYTRIWSLDSG-HLLCTIPFPYS 389 (425)
T ss_pred eEeeccCcCceeEeeehh-hhcccceeeeecccccccccccccccccc-eEEEccCeeEEEEEecccC-ceeeccCCCCc
Confidence 899999999999999997 3443334778888643332 23345556 7888999999999999987 6666663
Q ss_pred cCCCCEEEEEEcC
Q 018235 318 AHNADVNVISWNR 330 (359)
Q Consensus 318 ~h~~~V~~i~~s~ 330 (359)
+...++.+++|..
T Consensus 390 ~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 390 ASEVDIPSVAFDS 402 (425)
T ss_pred cccccccceehhc
Confidence 2333566666653
No 256
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.66 E-value=1.4e-07 Score=83.07 Aligned_cols=140 Identities=13% Similarity=0.154 Sum_probs=104.5
Q ss_pred eEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEc
Q 018235 170 RIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGD 249 (359)
Q Consensus 170 ~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs 249 (359)
-..|+|.| +++|+++.- .+.|-|..+ .+....|.. -+.|.-+.|.-+....|....
T Consensus 13 ~c~fSp~g-~yiAs~~~y-rlviRd~~t---------------------lq~~qlf~c-ldki~yieW~ads~~ilC~~y 68 (447)
T KOG4497|consen 13 FCSFSPCG-NYIASLSRY-RLVIRDSET---------------------LQLHQLFLC-LDKIVYIEWKADSCHILCVAY 68 (447)
T ss_pred ceeECCCC-Ceeeeeeee-EEEEeccch---------------------hhHHHHHHH-HHHhhheeeeccceeeeeeee
Confidence 35789999 899998765 777777765 122222221 345677899988875667778
Q ss_pred CCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEc
Q 018235 250 CNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWN 329 (359)
Q Consensus 250 ~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s 329 (359)
.++.|.+|++.+ ..|. ..+......+..++|||+|+++|.+..-+-.|.+|.+.+. + ...+.--...+..++|+
T Consensus 69 k~~~vqvwsl~Q-pew~---ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~-~-~~~~~~pK~~~kg~~f~ 142 (447)
T KOG4497|consen 69 KDPKVQVWSLVQ-PEWY---CKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQ-K-GYLLPHPKTNVKGYAFH 142 (447)
T ss_pred ccceEEEEEeec-ceeE---EEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccc-e-eEEecccccCceeEEEC
Confidence 889999999977 5665 4566677889999999999989999999999999999985 2 23333234456889999
Q ss_pred CCCCeEEEEe
Q 018235 330 RCWLAVCWHL 339 (359)
Q Consensus 330 ~~~~~l~~~~ 339 (359)
|+|++.+...
T Consensus 143 ~dg~f~ai~s 152 (447)
T KOG4497|consen 143 PDGQFCAILS 152 (447)
T ss_pred CCCceeeeee
Confidence 9999876443
No 257
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.65 E-value=7.5e-07 Score=80.53 Aligned_cols=86 Identities=19% Similarity=0.264 Sum_probs=69.2
Q ss_pred EecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEE
Q 018235 224 KFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAI 303 (359)
Q Consensus 224 ~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~i 303 (359)
-+.||-.-++.++|+|+++ ++++++.|..|++-..... ... -.-+.||+.-|..++.-++. .|+|+|.|++|++
T Consensus 146 ~~lGhvSml~dVavS~D~~-~IitaDRDEkIRvs~ypa~--f~I-esfclGH~eFVS~isl~~~~--~LlS~sGD~tlr~ 219 (390)
T KOG3914|consen 146 PILGHVSMLLDVAVSPDDQ-FIITADRDEKIRVSRYPAT--FVI-ESFCLGHKEFVSTISLTDNY--LLLSGSGDKTLRL 219 (390)
T ss_pred hhhhhhhhhheeeecCCCC-EEEEecCCceEEEEecCcc--cch-hhhccccHhheeeeeeccCc--eeeecCCCCcEEE
Confidence 3559999999999999998 9999999999998665442 221 13456899999999987765 5999999999999
Q ss_pred EECCCCCCceEEe
Q 018235 304 WDTRVGKSALTSF 316 (359)
Q Consensus 304 wD~r~~~~~~~~~ 316 (359)
||++++ +.+.++
T Consensus 220 Wd~~sg-k~L~t~ 231 (390)
T KOG3914|consen 220 WDITSG-KLLDTC 231 (390)
T ss_pred EecccC-Cccccc
Confidence 999998 444433
No 258
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.65 E-value=2.5e-07 Score=89.07 Aligned_cols=175 Identities=14% Similarity=0.175 Sum_probs=122.7
Q ss_pred ecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCC
Q 018235 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPIT 241 (359)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~ 241 (359)
++.....+++.|+... .++|+|+.||.+++..+.+........+.... .......++.||...|.-+.|+...
T Consensus 11 iPnnvkL~c~~WNke~-gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~------snLsmNQtLeGH~~sV~vvTWNe~~ 83 (1189)
T KOG2041|consen 11 IPNNVKLHCAEWNKES-GYIACGGADGLLKVLKLGTDTTDLNKSGLAAA------SNLSMNQTLEGHNASVMVVTWNENN 83 (1189)
T ss_pred CCCCceEEEEEEcccC-CeEEeccccceeEEEEccccCCcccccccccc------cccchhhhhccCcceEEEEEecccc
Confidence 4667889999999877 79999999999999998874333222221111 0233456889999999999999988
Q ss_pred CCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCC
Q 018235 242 TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNA 321 (359)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~ 321 (359)
. .|-|.+.+|.|.+|-+-. ++|.-. ..-...++.|.+++|+-+|. -++..-.||.|.+=.+... .+.--.-...
T Consensus 84 Q-KLTtSDt~GlIiVWmlyk-gsW~EE-MiNnRnKSvV~SmsWn~dG~-kIcIvYeDGavIVGsvdGN--RIwgKeLkg~ 157 (1189)
T KOG2041|consen 84 Q-KLTTSDTSGLIIVWMLYK-GSWCEE-MINNRNKSVVVSMSWNLDGT-KICIVYEDGAVIVGSVDGN--RIWGKELKGQ 157 (1189)
T ss_pred c-cccccCCCceEEEEeeec-ccHHHH-HhhCcCccEEEEEEEcCCCc-EEEEEEccCCEEEEeeccc--eecchhcchh
Confidence 7 999999999999999876 676521 11233568899999999998 8888888888877655542 1111111111
Q ss_pred CEEEEEEcCCCCeEEEEeeecccceEEEEEeC
Q 018235 322 DVNVISWNRCWLAVCWHLEVMMEHFLFMILDC 353 (359)
Q Consensus 322 ~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~ 353 (359)
-...+.|+++.+.+++... ++.+.++|.
T Consensus 158 ~l~hv~ws~D~~~~Lf~~a----nge~hlydn 185 (1189)
T KOG2041|consen 158 LLAHVLWSEDLEQALFKKA----NGETHLYDN 185 (1189)
T ss_pred eccceeecccHHHHHhhhc----CCcEEEecc
Confidence 2335689998887777666 444555543
No 259
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.64 E-value=8.8e-08 Score=88.33 Aligned_cols=190 Identities=17% Similarity=0.172 Sum_probs=122.3
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccc----------c---cccc------CCCCCCCCC
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAES----------E---TIVG------QGAPQVSNQ 219 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~----------~---~~~~------~~~~~~~~~ 219 (359)
.++-.|.+.|+.++.-|..++.|.|++.|+.|.-+|++.....-... . .... +..+....-
T Consensus 226 ~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf 305 (559)
T KOG1334|consen 226 KRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQF 305 (559)
T ss_pred eecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhh
Confidence 55668999999999999999999999999999999987632110000 0 0000 000000000
Q ss_pred CCc---EEecC------------------CCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCC-C-cc-------eecC
Q 018235 220 SPL---VKFGG------------------HKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASD-A-TW-------NVDP 269 (359)
Q Consensus 220 ~~~---~~~~~------------------h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~-~-~~-------~~~~ 269 (359)
..+ ..+.. ....|+++.++..+. -|+++-.|-.|+++...-+ + .+ ....
T Consensus 306 ~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~s-ElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k 384 (559)
T KOG1334|consen 306 ARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGS-ELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVK 384 (559)
T ss_pred hhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCcc-ceeeeecccceEEeccccccCCCCCCCcchhhccc
Confidence 000 00100 011478889987776 5555566888888844321 1 00 0012
Q ss_pred ccccCCCC--CeEEEEe-cCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccce
Q 018235 270 NPFIGHSA--SVEDLQW-SPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHF 346 (359)
Q Consensus 270 ~~~~~h~~--~V~~v~~-sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~ 346 (359)
+.|.||.. .|-.+-| -|... ++++||.-|.|.||+-.++ +.+..+.+-..-||||.-+|.-++|+...- +.
T Consensus 385 ~vYKGHrN~~TVKgVNFfGPrsE-yVvSGSDCGhIFiW~K~t~-eii~~MegDr~VVNCLEpHP~~PvLAsSGi----d~ 458 (559)
T KOG1334|consen 385 RVYKGHRNSRTVKGVNFFGPRSE-YVVSGSDCGHIFIWDKKTG-EIIRFMEGDRHVVNCLEPHPHLPVLASSGI----DH 458 (559)
T ss_pred hhhcccccccccceeeeccCccc-eEEecCccceEEEEecchh-HHHHHhhcccceEeccCCCCCCchhhccCC----cc
Confidence 34778863 4666665 45555 9999999999999998886 555555555558999999999999887654 78
Q ss_pred EEEEEeCcC
Q 018235 347 LFMILDCSR 355 (359)
Q Consensus 347 ~i~iwd~~~ 355 (359)
-|+||-+-+
T Consensus 459 DVKIWTP~~ 467 (559)
T KOG1334|consen 459 DVKIWTPLT 467 (559)
T ss_pred ceeeecCCc
Confidence 899998743
No 260
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.64 E-value=1.3e-05 Score=75.28 Aligned_cols=162 Identities=12% Similarity=0.010 Sum_probs=99.6
Q ss_pred eeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEE
Q 018235 169 NRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTG 248 (359)
Q Consensus 169 ~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sg 248 (359)
..+.++|++ .++.+.+.||.|.++|+.. .+.+.++.. .....++++|++|+..++++
T Consensus 40 ~~~~~s~Dg-r~~yv~~rdg~vsviD~~~---------------------~~~v~~i~~-G~~~~~i~~s~DG~~~~v~n 96 (369)
T PF02239_consen 40 AGLKFSPDG-RYLYVANRDGTVSVIDLAT---------------------GKVVATIKV-GGNPRGIAVSPDGKYVYVAN 96 (369)
T ss_dssp EEEE-TT-S-SEEEEEETTSEEEEEETTS---------------------SSEEEEEE--SSEEEEEEE--TTTEEEEEE
T ss_pred eEEEecCCC-CEEEEEcCCCeEEEEECCc---------------------ccEEEEEec-CCCcceEEEcCCCCEEEEEe
Confidence 446789998 5566667899999999998 455666654 33567899999999344455
Q ss_pred cCCCcEEEEecCCCCcceecC--ccc--cCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEE
Q 018235 249 DCNSCIYLWEPASDATWNVDP--NPF--IGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVN 324 (359)
Q Consensus 249 s~dg~I~lwd~~~~~~~~~~~--~~~--~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~ 324 (359)
...+.+.++|.++ .+.+..+ ... ....+.+..|.-+|....++++.-.-+.|-+.|...................
T Consensus 97 ~~~~~v~v~D~~t-le~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~ 175 (369)
T PF02239_consen 97 YEPGTVSVIDAET-LEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPH 175 (369)
T ss_dssp EETTEEEEEETTT---EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEE
T ss_pred cCCCceeEecccc-ccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeeccccccc
Confidence 5789999999877 3333100 011 1134578888888988834444445588888898876233323333445577
Q ss_pred EEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 325 VISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 325 ~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
...|+|++++++.+... .+.+.++|..++.
T Consensus 176 D~~~dpdgry~~va~~~---sn~i~viD~~~~k 205 (369)
T PF02239_consen 176 DGGFDPDGRYFLVAANG---SNKIAVIDTKTGK 205 (369)
T ss_dssp EEEE-TTSSEEEEEEGG---GTEEEEEETTTTE
T ss_pred ccccCcccceeeecccc---cceeEEEeeccce
Confidence 88999999998776442 4567777776654
No 261
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.63 E-value=3e-07 Score=81.50 Aligned_cols=196 Identities=16% Similarity=0.157 Sum_probs=135.3
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCcccccccccccc-----------------CCCC--
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVG-----------------QGAP-- 214 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~-----------------~~~~-- 214 (359)
+|.+.....+|...||....-|.. .-+.+.++|.+|+||--+.............+ +..+
T Consensus 13 kp~ll~~~eG~~d~vn~~~l~~~e-~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngt 91 (404)
T KOG1409|consen 13 KPELLSKIEGSQDDVNAAILIPKE-EGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGT 91 (404)
T ss_pred chhhhhhhcCchhhhhhheeccCC-CCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecce
Confidence 778888888999999999888877 56778899999999965543332222111111 0000
Q ss_pred --------CCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCC------------------------
Q 018235 215 --------QVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASD------------------------ 262 (359)
Q Consensus 215 --------~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~------------------------ 262 (359)
.-++.........|...++++-|+-..+ .+++.+.|..+.---.+.+
T Consensus 92 vtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e-~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fv 170 (404)
T KOG1409|consen 92 VTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHE-WVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFV 170 (404)
T ss_pred EEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCce-eEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEe
Confidence 0023444556677888888888887766 7777777765432111111
Q ss_pred ----Cc---------ceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEc
Q 018235 263 ----AT---------WNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWN 329 (359)
Q Consensus 263 ----~~---------~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s 329 (359)
++ ....+..+.+|...+.+++|.|... ++.+|..|.+|.+||+-........+.+|...|..++.-
T Consensus 171 Gd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~-~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~ 249 (404)
T KOG1409|consen 171 GDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQR-LLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYA 249 (404)
T ss_pred cccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCc-EEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhh
Confidence 00 0011245678999999999999988 999999999999999987755666778999989888877
Q ss_pred CCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 330 RCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 330 ~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
+.-+.++.... |+.|.+|+....
T Consensus 250 ~~t~~l~S~~e----dg~i~~w~mn~~ 272 (404)
T KOG1409|consen 250 QHTRQLISCGE----DGGIVVWNMNVK 272 (404)
T ss_pred hhheeeeeccC----CCeEEEEeccce
Confidence 76666655443 888999987653
No 262
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.62 E-value=1e-05 Score=82.51 Aligned_cols=224 Identities=17% Similarity=0.132 Sum_probs=132.2
Q ss_pred cCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCeEEEEEecC
Q 018235 85 EFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAH 164 (359)
Q Consensus 85 ~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~H 164 (359)
.-+|+-+|+.|+ .++-++||++..+.+.. .......+...-
T Consensus 1057 s~~~~s~FvsgS-----~DGtVKvW~~~k~~~~~----------------------------------~s~rS~ltys~~ 1097 (1431)
T KOG1240|consen 1057 SSEHTSLFVSGS-----DDGTVKVWNLRKLEGEG----------------------------------GSARSELTYSPE 1097 (1431)
T ss_pred cCCCCceEEEec-----CCceEEEeeehhhhcCc----------------------------------ceeeeeEEEecc
Confidence 345667788777 67789999885332110 022233444445
Q ss_pred CCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCcccc-----------ccccccccCCCCCCCCCC-------------
Q 018235 165 QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNAL-----------AESETIVGQGAPQVSNQS------------- 220 (359)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~-----------~~~~~~~~~~~~~~~~~~------------- 220 (359)
.+.+.++..++.+ +.+|.++.||.|++.++..-.... ...+..............
T Consensus 1098 ~sr~~~vt~~~~~-~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv 1176 (1431)
T KOG1240|consen 1098 GSRVEKVTMCGNG-DQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIV 1176 (1431)
T ss_pred CCceEEEEeccCC-CeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceE
Confidence 6789999999988 788888999999999987621100 000000000000000000
Q ss_pred --------CcEE--ecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCC-
Q 018235 221 --------PLVK--FGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEP- 289 (359)
Q Consensus 221 --------~~~~--~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~- 289 (359)
...+ +.-..+.|++++.+|.+. .+++|...|.+-+||+|- +.++. .--.++...++-+..+|..+
T Consensus 1177 ~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~-WlviGts~G~l~lWDLRF-~~~i~--sw~~P~~~~i~~v~~~~~~~~ 1252 (1431)
T KOG1240|consen 1177 SWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCN-WLVIGTSRGQLVLWDLRF-RVPIL--SWEHPARAPIRHVWLCPTYPQ 1252 (1431)
T ss_pred EecchhhhhHHhhhcCccccceeEEEecCCce-EEEEecCCceEEEEEeec-Cceee--cccCcccCCcceEEeeccCCC
Confidence 0001 111234689999999998 999999999999999987 33331 12233457788888887655
Q ss_pred -CEEEEEe--CCCcEEEEECCCCCCceEEeecC--------CC-----------CEEEEEEcCCCCeEEEEeeecccceE
Q 018235 290 -DVFASCS--VDGHIAIWDTRVGKSALTSFKAH--------NA-----------DVNVISWNRCWLAVCWHLEVMMEHFL 347 (359)
Q Consensus 290 -~~las~s--~Dg~I~iwD~r~~~~~~~~~~~h--------~~-----------~V~~i~~s~~~~~l~~~~~~~~~d~~ 347 (359)
++.++++ ..+-|.+|++.++ .+...+... .. .....++..-+.+++.+.. |..
T Consensus 1253 ~S~~vs~~~~~~nevs~wn~~~g-~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggs----d~k 1327 (1431)
T KOG1240|consen 1253 ESVSVSAGSSSNNEVSTWNMETG-LRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGS----DMK 1327 (1431)
T ss_pred CceEEEecccCCCceeeeecccC-cceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCC----ccc
Confidence 4555544 5788999999987 433333211 11 1122233333445555544 788
Q ss_pred EEEEeCcCCc
Q 018235 348 FMILDCSRGE 357 (359)
Q Consensus 348 i~iwd~~~g~ 357 (359)
|+.||.....
T Consensus 1328 IR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1328 IRKWDPTRPE 1337 (1431)
T ss_pred eeeccCCCcc
Confidence 9999987643
No 263
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.61 E-value=5.8e-08 Score=59.67 Aligned_cols=38 Identities=26% Similarity=0.580 Sum_probs=35.5
Q ss_pred CCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEe
Q 018235 220 SPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWE 258 (359)
Q Consensus 220 ~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd 258 (359)
+++.++.+|...|++|+|+|++. +|+||+.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~-~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGN-FLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccc-cceeeCCCCEEEEEC
Confidence 45788999999999999999987 999999999999997
No 264
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.59 E-value=2e-05 Score=75.33 Aligned_cols=158 Identities=10% Similarity=0.059 Sum_probs=91.7
Q ss_pred CCCceeeEEEeCCCCcEEEEEeCCC--cEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCC
Q 018235 164 HQGCVNRIRAMTQNPHICASWADTG--HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPIT 241 (359)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg--~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~ 241 (359)
..+.+...+|+|++..++++.+.+| .|.++++.. .. ...+..+........|+|++
T Consensus 231 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~---------------------g~-~~~LT~~~~~d~~p~~SPDG 288 (419)
T PRK04043 231 SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT---------------------KT-LTQITNYPGIDVNGNFVEDD 288 (419)
T ss_pred CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC---------------------Cc-EEEcccCCCccCccEECCCC
Confidence 4566667889999977777766554 566667654 12 22233333223356899999
Q ss_pred CCeEEEEcCCC--cEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCC--------CcEEEEECCCCCC
Q 018235 242 TGRLVTGDCNS--CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD--------GHIAIWDTRVGKS 311 (359)
Q Consensus 242 ~~~l~sgs~dg--~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D--------g~I~iwD~r~~~~ 311 (359)
..++++.+..+ .|++.++.. +.... ..+.+. ....|||++..++++.... ..|.+.|+.++
T Consensus 289 ~~I~F~Sdr~g~~~Iy~~dl~~-g~~~r--lt~~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g-- 359 (419)
T PRK04043 289 KRIVFVSDRLGYPNIFMKKLNS-GSVEQ--VVFHGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSD-- 359 (419)
T ss_pred CEEEEEECCCCCceEEEEECCC-CCeEe--CccCCC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCC--
Confidence 85555554555 466667755 33221 112222 1248999999444444432 36788888775
Q ss_pred ceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 312 ALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 312 ~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
....+.... .....+|+|+|+.+++.... +....|.+.+..
T Consensus 360 ~~~~LT~~~-~~~~p~~SPDG~~I~f~~~~-~~~~~L~~~~l~ 400 (419)
T PRK04043 360 YIRRLTANG-VNQFPRFSSDGGSIMFIKYL-GNQSALGIIRLN 400 (419)
T ss_pred CeEECCCCC-CcCCeEECCCCCEEEEEEcc-CCcEEEEEEecC
Confidence 234443322 23358999999998887543 223345555543
No 265
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.57 E-value=1.3e-07 Score=58.10 Aligned_cols=35 Identities=46% Similarity=0.902 Sum_probs=33.3
Q ss_pred ccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEE
Q 018235 270 NPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWD 305 (359)
Q Consensus 270 ~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD 305 (359)
..+.+|...|++|+|+|++. +|++|+.|++|+|||
T Consensus 5 ~~~~~h~~~i~~i~~~~~~~-~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 5 RTFRGHSSSINSIAWSPDGN-FLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEESSSSSEEEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred EEEcCCCCcEEEEEEecccc-cceeeCCCCEEEEEC
Confidence 67899999999999999988 999999999999997
No 266
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.56 E-value=5.2e-06 Score=71.57 Aligned_cols=150 Identities=11% Similarity=-0.002 Sum_probs=107.1
Q ss_pred eeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcE-EecCCCCceEEEEeCCCCCCeEE
Q 018235 168 VNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLV-KFGGHKDEGYAIDWNPITTGRLV 246 (359)
Q Consensus 168 V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~sp~~~~~l~ 246 (359)
++.+.+++++ .+.++.++...|..|.+.... ...+. ....-++.+++.+|+.... .+|
T Consensus 161 ~ns~~~snd~-~~~~~Vgds~~Vf~y~id~~s-------------------ey~~~~~~a~t~D~gF~~S~s~~~~-~FA 219 (344)
T KOG4532|consen 161 QNSLHYSNDP-SWGSSVGDSRRVFRYAIDDES-------------------EYIENIYEAPTSDHGFYNSFSENDL-QFA 219 (344)
T ss_pred eeeeEEcCCC-ceEEEecCCCcceEEEeCCcc-------------------ceeeeeEecccCCCceeeeeccCcc-eEE
Confidence 8899999998 899999999999999998731 11222 3444566889999999998 999
Q ss_pred EEcCCCcEEEEecCCCCcceecC-ccccCCCCCeEEEEecCCCCC-EEEEEeCCCcEEEEECCCCCCceE-Ee-----ec
Q 018235 247 TGDCNSCIYLWEPASDATWNVDP-NPFIGHSASVEDLQWSPTEPD-VFASCSVDGHIAIWDTRVGKSALT-SF-----KA 318 (359)
Q Consensus 247 sgs~dg~I~lwd~~~~~~~~~~~-~~~~~h~~~V~~v~~sp~~~~-~las~s~Dg~I~iwD~r~~~~~~~-~~-----~~ 318 (359)
++..||++.|||+|..+.+.... ..-..|.+.+..+.|+|.|.. +|.-.-.-+.+.+.|+|+...+.. .+ ..
T Consensus 220 v~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~ 299 (344)
T KOG4532|consen 220 VVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERK 299 (344)
T ss_pred EEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcccccc
Confidence 99999999999999865544211 223348899999999987753 344444457899999999833221 11 23
Q ss_pred CCC-CEEEEEEcCCCCeEEEE
Q 018235 319 HNA-DVNVISWNRCWLAVCWH 338 (359)
Q Consensus 319 h~~-~V~~i~~s~~~~~l~~~ 338 (359)
|.. .|..-.|+..+.-+...
T Consensus 300 ~~tq~ifgt~f~~~n~s~~v~ 320 (344)
T KOG4532|consen 300 HNTQHIFGTNFNNENESNDVK 320 (344)
T ss_pred ccccccccccccCCCcccccc
Confidence 433 37777888777654433
No 267
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.56 E-value=1.1e-06 Score=79.37 Aligned_cols=160 Identities=18% Similarity=0.173 Sum_probs=107.3
Q ss_pred CceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeE
Q 018235 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRL 245 (359)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l 245 (359)
...+.+..++.+ .++|.+.......++++...... .+++..+.... .-+++.+..... ..
T Consensus 63 ~a~~~~~~s~~~-~llAv~~~~K~~~~f~~~~~~~~-----------------~kl~~~~~v~~-~~~ai~~~~~~~-sv 122 (390)
T KOG3914|consen 63 LAPALVLTSDSG-RLVAVATSSKQRAVFDYRENPKG-----------------AKLLDVSCVPK-RPTAISFIREDT-SV 122 (390)
T ss_pred ccccccccCCCc-eEEEEEeCCCceEEEEEecCCCc-----------------ceeeeEeeccc-Ccceeeeeeccc-eE
Confidence 344455566666 78888888888888888763210 22233332222 223444444444 33
Q ss_pred EEEcCC---CcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe-ecCCC
Q 018235 246 VTGDCN---SCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF-KAHNA 321 (359)
Q Consensus 246 ~sgs~d---g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~-~~h~~ 321 (359)
..+..- ..+.+|.... +. ...+.||-+.+.+|+|+|+.+ +++++..|..|||-..... ..+..+ -+|..
T Consensus 123 ~v~dkagD~~~~di~s~~~-~~----~~~~lGhvSml~dVavS~D~~-~IitaDRDEkIRvs~ypa~-f~IesfclGH~e 195 (390)
T KOG3914|consen 123 LVADKAGDVYSFDILSADS-GR----CEPILGHVSMLLDVAVSPDDQ-FIITADRDEKIRVSRYPAT-FVIESFCLGHKE 195 (390)
T ss_pred EEEeecCCceeeeeecccc-cC----cchhhhhhhhhheeeecCCCC-EEEEecCCceEEEEecCcc-cchhhhccccHh
Confidence 333333 4455555433 22 256789999999999999998 9999999999999877765 444454 68999
Q ss_pred CEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 322 DVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 322 ~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
.|..|+.-++.. |+.+.. |++|++||..+|+
T Consensus 196 FVS~isl~~~~~-LlS~sG----D~tlr~Wd~~sgk 226 (390)
T KOG3914|consen 196 FVSTISLTDNYL-LLSGSG----DKTLRLWDITSGK 226 (390)
T ss_pred heeeeeeccCce-eeecCC----CCcEEEEecccCC
Confidence 999999887655 444433 9999999999886
No 268
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=1.6e-05 Score=74.93 Aligned_cols=115 Identities=13% Similarity=0.191 Sum_probs=87.4
Q ss_pred CCceEEEEeCCCCCCeEEE--EcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEe---CCCcEEE
Q 018235 229 KDEGYAIDWNPITTGRLVT--GDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS---VDGHIAI 303 (359)
Q Consensus 229 ~~~v~~l~~sp~~~~~l~s--gs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s---~Dg~I~i 303 (359)
.++|+++.|+|.++ .|+. |-.--.+.|+|++- .++ +.--.++-+++-|+|.|. +++.++ .-|.|-|
T Consensus 270 ~GPVhdv~W~~s~~-EF~VvyGfMPAkvtifnlr~--~~v-----~df~egpRN~~~fnp~g~-ii~lAGFGNL~G~mEv 340 (566)
T KOG2315|consen 270 EGPVHDVTWSPSGR-EFAVVYGFMPAKVTIFNLRG--KPV-----FDFPEGPRNTAFFNPHGN-IILLAGFGNLPGDMEV 340 (566)
T ss_pred CCCceEEEECCCCC-EEEEEEecccceEEEEcCCC--CEe-----EeCCCCCccceEECCCCC-EEEEeecCCCCCceEE
Confidence 57999999999997 5444 55667899999864 333 333467788999999999 666655 3588999
Q ss_pred EECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeee--cccceEEEEEeCcC
Q 018235 304 WDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEV--MMEHFLFMILDCSR 355 (359)
Q Consensus 304 wD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~--~~~d~~i~iwd~~~ 355 (359)
||+.+. +.+..+.+..+ +.+.|+|+|+++++.... .+.|+-++||+...
T Consensus 341 wDv~n~-K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 341 WDVPNR-KLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred Eeccch-hhccccccCCc--eEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 999986 77777765544 556999999999887544 35588899998653
No 269
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.53 E-value=4.2e-07 Score=80.22 Aligned_cols=104 Identities=19% Similarity=0.235 Sum_probs=78.8
Q ss_pred CceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeE
Q 018235 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRL 245 (359)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l 245 (359)
..|.-|.|..+...++.....++.|.+|++..+ .-...+..-.+.+.+++|||+|+.+|
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp---------------------ew~ckIdeg~agls~~~WSPdgrhiL 107 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP---------------------EWYCKIDEGQAGLSSISWSPDGRHIL 107 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecc---------------------eeEEEeccCCCcceeeeECCCcceEe
Confidence 456667888877788888899999999999872 33345555667889999999998788
Q ss_pred EEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEe
Q 018235 246 VTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS 296 (359)
Q Consensus 246 ~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s 296 (359)
.+...+-+|.+|.+.+..... +..-+..+..++|+|+|+ +.|.++
T Consensus 108 ~tseF~lriTVWSL~t~~~~~-----~~~pK~~~kg~~f~~dg~-f~ai~s 152 (447)
T KOG4497|consen 108 LTSEFDLRITVWSLNTQKGYL-----LPHPKTNVKGYAFHPDGQ-FCAILS 152 (447)
T ss_pred eeecceeEEEEEEeccceeEE-----ecccccCceeEEECCCCc-eeeeee
Confidence 899999999999998743322 222234567899999998 655554
No 270
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.52 E-value=2.3e-06 Score=75.14 Aligned_cols=155 Identities=19% Similarity=0.219 Sum_probs=107.2
Q ss_pred ecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCC-----CceEEEE
Q 018235 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHK-----DEGYAID 236 (359)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-----~~v~~l~ 236 (359)
-.|+--||+|.++.+. ..+.+ +++-.|.+|++......+ .+.-++.|. .-|++..
T Consensus 169 NaH~yhiNSiS~NsD~-et~lS-aDdLrINLWnl~i~D~sF------------------nIVDiKP~nmeeLteVItSae 228 (460)
T COG5170 169 NAHPYHINSISFNSDK-ETLLS-ADDLRINLWNLEIIDGSF------------------NIVDIKPHNMEELTEVITSAE 228 (460)
T ss_pred ccceeEeeeeeecCch-heeee-ccceeeeeccccccCCce------------------EEEeccCccHHHHHHHHhhcc
Confidence 3689999999999887 44544 678899999998732111 122233443 2467888
Q ss_pred eCCCCCCeEEEEcCCCcEEEEecCCCCccee------------cCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEE
Q 018235 237 WNPITTGRLVTGDCNSCIYLWEPASDATWNV------------DPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIW 304 (359)
Q Consensus 237 ~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~------------~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iw 304 (359)
|+|.....|.-.+..|.|++-|+|+..-+.. ....|.+-.++|.+++|+++|+ ++++-+. -+|+||
T Consensus 229 Fhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngr-yIlsRdy-ltvkiw 306 (460)
T COG5170 229 FHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGR-YILSRDY-LTVKIW 306 (460)
T ss_pred cCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCc-EEEEecc-ceEEEE
Confidence 9998877888888899999999996321110 0122334457899999999999 7776654 579999
Q ss_pred ECCCCCCceEEeecCC------------CCE---EEEEEcCCCCeEEEE
Q 018235 305 DTRVGKSALTSFKAHN------------ADV---NVISWNRCWLAVCWH 338 (359)
Q Consensus 305 D~r~~~~~~~~~~~h~------------~~V---~~i~~s~~~~~l~~~ 338 (359)
|.+..+.|+.++.-|. ..| ..+.|+.+.+-++.+
T Consensus 307 Dvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sg 355 (460)
T COG5170 307 DVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSG 355 (460)
T ss_pred ecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCccccccc
Confidence 9999878888886552 222 456788776655544
No 271
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.52 E-value=6.3e-07 Score=94.05 Aligned_cols=159 Identities=12% Similarity=0.198 Sum_probs=122.7
Q ss_pred CCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecC-CCCceEEEEeCCCCC
Q 018235 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGG-HKDEGYAIDWNPITT 242 (359)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~sp~~~ 242 (359)
|-..|.|+.-+|.. -+.+||+.||.|++|.... ..++..+.. -...+..+.|+.+|.
T Consensus 2207 ~v~~v~r~~sHp~~-~~Yltgs~dgsv~~~~w~~---------------------~~~v~~~rt~g~s~vtr~~f~~qGn 2264 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSD-PYYLTGSQDGSVRMFEWGH---------------------GQQVVCFRTAGNSRVTRSRFNHQGN 2264 (2439)
T ss_pred ccCceeeecCCCCC-ceEEecCCCceEEEEeccC---------------------CCeEEEeeccCcchhhhhhhcccCC
Confidence 44667777778877 4677999999999999887 455555532 226889999999997
Q ss_pred CeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEe---CCCcEEEEECCCCCCceEEeecC
Q 018235 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS---VDGHIAIWDTRVGKSALTSFKAH 319 (359)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s---~Dg~I~iwD~r~~~~~~~~~~~h 319 (359)
.+..++.||.+.+|.+.. ++. ...+.|.....+..|-- . ++++++ .++.+.+||.......-..-.+|
T Consensus 2265 -k~~i~d~dg~l~l~q~~p--k~~---~s~qchnk~~~Df~Fi~--s-~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H 2335 (2439)
T KOG1064|consen 2265 -KFGIVDGDGDLSLWQASP--KPY---TSWQCHNKALSDFRFIG--S-LLATAGRSSDNRNVCLWDTLLPPMNSLVHTCH 2335 (2439)
T ss_pred -ceeeeccCCceeecccCC--cce---eccccCCccccceeeee--h-hhhccccCCCCCcccchhcccCcccceeeeec
Confidence 999999999999999852 222 45567888888988865 3 677764 67889999987652211122889
Q ss_pred CCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 320 NADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 320 ~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
.+.++++++.|..++++.+.+ ++.+++||++.-.
T Consensus 2336 ~~gaT~l~~~P~~qllisggr----~G~v~l~D~rqrq 2369 (2439)
T KOG1064|consen 2336 DGGATVLAYAPKHQLLISGGR----KGEVCLFDIRQRQ 2369 (2439)
T ss_pred CCCceEEEEcCcceEEEecCC----cCcEEEeehHHHH
Confidence 999999999999999998877 8999999987543
No 272
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.50 E-value=1.1e-05 Score=85.38 Aligned_cols=175 Identities=10% Similarity=0.037 Sum_probs=109.6
Q ss_pred eeEEEeCCCCcEEEEEeCCCcEEEEECCCCccc-cccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEE
Q 018235 169 NRIRAMTQNPHICASWADTGHVQVWDLRSHLNA-LAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVT 247 (359)
Q Consensus 169 ~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s 247 (359)
+.++++|.+..++++.+.++.|++||....... +...+..... ..... .........+|+++|++..++++
T Consensus 686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~------~g~~~--~~~~~~~P~GIavspdG~~LYVA 757 (1057)
T PLN02919 686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNL------NGSSG--TSTSFAQPSGISLSPDLKELYIA 757 (1057)
T ss_pred eEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccC------CCCcc--ccccccCccEEEEeCCCCEEEEE
Confidence 468888855478888889999999998652111 1000000000 00000 00111234679999998745666
Q ss_pred EcCCCcEEEEecCCCCcceec---------CccccC--------CCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCC
Q 018235 248 GDCNSCIYLWEPASDATWNVD---------PNPFIG--------HSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK 310 (359)
Q Consensus 248 gs~dg~I~lwd~~~~~~~~~~---------~~~~~~--------h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~ 310 (359)
-+.+++|++||+.+++..... ...+.. .-.....+++++++. ++++.+.++.|++||..++
T Consensus 758 Ds~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg- 835 (1057)
T PLN02919 758 DSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATK- 835 (1057)
T ss_pred ECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCCC-
Confidence 677789999998763321100 000100 011345789999998 9999999999999999875
Q ss_pred CceEEeecC--------------CCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 311 SALTSFKAH--------------NADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 311 ~~~~~~~~h--------------~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
.+..+.+. -.....|+++++|.+++.+.. ++.|++|+..++.+
T Consensus 836 -~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~----Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 836 -RVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTN----NSLIRYLDLNKGEA 892 (1057)
T ss_pred -eEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECC----CCEEEEEECCCCcc
Confidence 23333211 124678999999998877765 78999999988754
No 273
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.45 E-value=2.3e-06 Score=83.62 Aligned_cols=158 Identities=10% Similarity=0.162 Sum_probs=108.4
Q ss_pred CCeEEEEEec-------CCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEec
Q 018235 154 TPILQLRKVA-------HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG 226 (359)
Q Consensus 154 ~~~~~~~~~~-------H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (359)
+|++....+. ....+.|++++- ..+|-|+-+|.|++++... .+ .+..
T Consensus 21 ePklkY~Ri~n~~~~~~~~D~is~~av~~---~~~~~GtH~g~v~~~~~~~----------------------~~-~~~~ 74 (846)
T KOG2066|consen 21 EPKLKYERISNLVKNFLQNDAISCCAVHD---KFFALGTHRGAVYLTTCQG----------------------NP-KTNF 74 (846)
T ss_pred CccceehhhhcccHHHHhhhHHHHHHhhc---ceeeeccccceEEEEecCC----------------------cc-cccc
Confidence 6666655443 234566666654 6899999999999999876 33 3333
Q ss_pred CCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCC----CCCEEEEEeCCCcEE
Q 018235 227 GHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPT----EPDVFASCSVDGHIA 302 (359)
Q Consensus 227 ~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~----~~~~las~s~Dg~I~ 302 (359)
.|+.. ...|. +++||+.||+|.|-.+-+.... ..+ ...-++..|+++|+ ..-.|++|+.-| +.
T Consensus 75 ~~s~~------~~~Ge-y~asCS~DGkv~I~sl~~~~~~----~~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lv 141 (846)
T KOG2066|consen 75 DHSSS------ILEGE-YVASCSDDGKVVIGSLFTDDEI----TQY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LV 141 (846)
T ss_pred ccccc------ccCCc-eEEEecCCCcEEEeeccCCccc----eeE-ecCCcceeEEeccchhhhhhhheeecCcce-EE
Confidence 45443 55677 9999999999998877653322 112 23468899999998 222789999888 77
Q ss_pred EEECCCCCCce-EEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 303 IWDTRVGKSAL-TSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 303 iwD~r~~~~~~-~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
++.-+..+... ..+....++|.+|+|. |.+++|+.. .-++++|..++.
T Consensus 142 L~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand-----~Gv~vyd~~~~~ 190 (846)
T KOG2066|consen 142 LSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWAND-----DGVKVYDTPTRQ 190 (846)
T ss_pred EehhhhhcCccceeeecCccceEEEEec--CcEEEEecC-----CCcEEEeccccc
Confidence 77655442221 2345667899999998 889999864 337888877654
No 274
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.45 E-value=7.9e-06 Score=81.00 Aligned_cols=152 Identities=14% Similarity=0.091 Sum_probs=114.1
Q ss_pred eeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEE
Q 018235 168 VNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVT 247 (359)
Q Consensus 168 V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s 247 (359)
|.-+|. +..++.+|...|+|.+-|.+. .+++++|..|++.+.+++. .|+ .|+|
T Consensus 180 v~imR~---Nnr~lf~G~t~G~V~LrD~~s---------------------~~~iht~~aHs~siSDfDv--~GN-lLit 232 (1118)
T KOG1275|consen 180 VTIMRY---NNRNLFCGDTRGTVFLRDPNS---------------------FETIHTFDAHSGSISDFDV--QGN-LLIT 232 (1118)
T ss_pred eEEEEe---cCcEEEeecccceEEeecCCc---------------------Cceeeeeeccccceeeeec--cCC-eEEE
Confidence 544444 337889999999999999988 6889999999998877666 565 8888
Q ss_pred EcC---------CCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCc---eEE
Q 018235 248 GDC---------NSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSA---LTS 315 (359)
Q Consensus 248 gs~---------dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~---~~~ 315 (359)
|+. |..|++||+|.-.. + .++.-+.++ .-+.|+|.-...+|.++..|...+.|..+...+ +..
T Consensus 233 CG~S~R~~~l~~D~FvkVYDLRmmra-l---~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~ 307 (1118)
T KOG1275|consen 233 CGYSMRRYNLAMDPFVKVYDLRMMRA-L---SPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKM 307 (1118)
T ss_pred eecccccccccccchhhhhhhhhhhc-c---CCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeE
Confidence 864 56678999987332 2 233333333 457899998889999999999999995443222 333
Q ss_pred eecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 316 FKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 316 ~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
+....+.+..+++++++..++++.. .+.|.+|-.+.
T Consensus 308 v~p~~s~i~~fDiSsn~~alafgd~----~g~v~~wa~~~ 343 (1118)
T KOG1275|consen 308 VNPNGSGISAFDISSNGDALAFGDH----EGHVNLWADRP 343 (1118)
T ss_pred EccCCCcceeEEecCCCceEEEecc----cCcEeeecCCC
Confidence 4445666999999999999999877 78899997443
No 275
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.39 E-value=2.6e-05 Score=73.27 Aligned_cols=133 Identities=11% Similarity=0.111 Sum_probs=89.8
Q ss_pred EEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEec
Q 018235 180 ICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEP 259 (359)
Q Consensus 180 ~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~ 259 (359)
++++-..+|.|.+.|..+ .+.+..+......-..+.++|+++ ++++++.||.|.++|+
T Consensus 8 ~~V~~~~~~~v~viD~~t---------------------~~~~~~i~~~~~~h~~~~~s~Dgr-~~yv~~rdg~vsviD~ 65 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGAT---------------------NKVVARIPTGGAPHAGLKFSPDGR-YLYVANRDGTVSVIDL 65 (369)
T ss_dssp EEEEEGGGTEEEEEETTT----------------------SEEEEEE-STTEEEEEE-TT-SS-EEEEEETTSEEEEEET
T ss_pred EEEEecCCCEEEEEECCC---------------------CeEEEEEcCCCCceeEEEecCCCC-EEEEEcCCCeEEEEEC
Confidence 345667889999999987 566777765544444578999998 8888889999999999
Q ss_pred CCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecC-------CCCEEEEEEcCCC
Q 018235 260 ASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAH-------NADVNVISWNRCW 332 (359)
Q Consensus 260 ~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h-------~~~V~~i~~s~~~ 332 (359)
.+ .+.+ ..+.. .....++++||+|+.+++++...+.+.|+|.++. +++..+... .+.+..|..+|..
T Consensus 66 ~~-~~~v---~~i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tl-e~v~~I~~~~~~~~~~~~Rv~aIv~s~~~ 139 (369)
T PF02239_consen 66 AT-GKVV---ATIKV-GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETL-EPVKTIPTGGMPVDGPESRVAAIVASPGR 139 (369)
T ss_dssp TS-SSEE---EEEE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT---EEEEEE--EE-TTTS---EEEEEE-SSS
T ss_pred Cc-ccEE---EEEec-CCCcceEEEcCCCCEEEEEecCCCceeEeccccc-cceeecccccccccccCCCceeEEecCCC
Confidence 87 4433 33332 3456889999999967777788999999999997 777776432 3467788888888
Q ss_pred CeEEEEee
Q 018235 333 LAVCWHLE 340 (359)
Q Consensus 333 ~~l~~~~~ 340 (359)
..+++...
T Consensus 140 ~~fVv~lk 147 (369)
T PF02239_consen 140 PEFVVNLK 147 (369)
T ss_dssp SEEEEEET
T ss_pred CEEEEEEc
Confidence 86665543
No 276
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.37 E-value=7.5e-07 Score=76.28 Aligned_cols=75 Identities=21% Similarity=0.400 Sum_probs=66.5
Q ss_pred ceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCC
Q 018235 231 EGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV 308 (359)
Q Consensus 231 ~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~ 308 (359)
.+.+++-+|....++++|+.||.+-+||.++...+ ...+..|+..++.|-|+|..+.-|.+|+.||++-.||..+
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p---~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMP---VSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccch---HHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 48899999998878999999999999999985333 3668899999999999999888999999999999999875
No 277
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.36 E-value=0.00013 Score=69.75 Aligned_cols=162 Identities=11% Similarity=0.037 Sum_probs=96.5
Q ss_pred CceeeEEEeCCCCcEEE-EEeC--CCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCC
Q 018235 166 GCVNRIRAMTQNPHICA-SWAD--TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (359)
Q Consensus 166 ~~V~~i~~~p~~~~~la-t~s~--dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~ 242 (359)
+.+...+|+|++..+++ +... ...|+++|+.. ++.. .+........+.+|+|++.
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~t---------------------g~~~-~lt~~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYT---------------------GKKE-KIASSQGMLVVSDVSKDGS 245 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCC---------------------CcEE-EEecCCCcEEeeEECCCCC
Confidence 46778999999964444 3332 45688888865 2222 2222334455788999998
Q ss_pred CeEEEEcCCC--cEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCC--cEEEEECCCCCCceEEeec
Q 018235 243 GRLVTGDCNS--CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG--HIAIWDTRVGKSALTSFKA 318 (359)
Q Consensus 243 ~~l~sgs~dg--~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg--~I~iwD~r~~~~~~~~~~~ 318 (359)
.++++.+.++ .|+++++.. +.. +.+..+........|+|+|..++++....+ .|.+.|+.++ . ...+..
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~-g~~----~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g-~-~~rlt~ 318 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNT-KTL----TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSG-S-VEQVVF 318 (419)
T ss_pred EEEEEEccCCCcEEEEEECCC-CcE----EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCC-C-eEeCcc
Confidence 5555655554 577778755 332 234434333345689999985555544444 4777788765 2 222321
Q ss_pred CCCCEEEEEEcCCCCeEEEEeeeccc-----ceEEEEEeCcCCcc
Q 018235 319 HNADVNVISWNRCWLAVCWHLEVMME-----HFLFMILDCSRGEI 358 (359)
Q Consensus 319 h~~~V~~i~~s~~~~~l~~~~~~~~~-----d~~i~iwd~~~g~v 358 (359)
... . ...|+|+|+.+++....... ...|.+.+..+|..
T Consensus 319 ~g~-~-~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~ 361 (419)
T PRK04043 319 HGK-N-NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI 361 (419)
T ss_pred CCC-c-CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe
Confidence 111 1 24899999999887653211 14577777776653
No 278
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.34 E-value=0.0002 Score=66.87 Aligned_cols=172 Identities=10% Similarity=0.072 Sum_probs=105.2
Q ss_pred ecCCCceeeEEEeCCCCcEEEEEe---CCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 162 VAHQGCVNRIRAMTQNPHICASWA---DTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s---~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
..-...-.-+.++|.+..+.++.. ..|.|..|.+...... ...+.........-..++.+
T Consensus 33 ~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~-----------------L~~~~~~~~~g~~p~~i~~~ 95 (345)
T PF10282_consen 33 VAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGT-----------------LTLLNSVPSGGSSPCHIAVD 95 (345)
T ss_dssp EEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTE-----------------EEEEEEEEESSSCEEEEEEC
T ss_pred ecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcce-----------------eEEeeeeccCCCCcEEEEEe
Confidence 334556667889999844444433 3689999998762111 12222232223344579999
Q ss_pred CCCCCeEEEE-cCCCcEEEEecCCCCcceecCccc----------cCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECC
Q 018235 239 PITTGRLVTG-DCNSCIYLWEPASDATWNVDPNPF----------IGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTR 307 (359)
Q Consensus 239 p~~~~~l~sg-s~dg~I~lwd~~~~~~~~~~~~~~----------~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r 307 (359)
|++. +|+++ -.+|.|.++++...+........+ ........++.|+|+++.++++.-....|++|++.
T Consensus 96 ~~g~-~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~ 174 (345)
T PF10282_consen 96 PDGR-FLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDID 174 (345)
T ss_dssp TTSS-EEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-
T ss_pred cCCC-EEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEe
Confidence 9998 55555 468999999998754432111111 11235578899999999666666667789999998
Q ss_pred CCCCce---EEe-ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 308 VGKSAL---TSF-KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 308 ~~~~~~---~~~-~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
.....+ ..+ ....+....+.|+|+++++...... .+.|.+++..
T Consensus 175 ~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~---s~~v~v~~~~ 222 (345)
T PF10282_consen 175 DDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNEL---SNTVSVFDYD 222 (345)
T ss_dssp TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETT---TTEEEEEEEE
T ss_pred CCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCC---CCcEEEEeec
Confidence 763222 222 2345668899999999988776553 5566666655
No 279
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.32 E-value=2.3e-06 Score=75.16 Aligned_cols=185 Identities=15% Similarity=0.193 Sum_probs=116.1
Q ss_pred CCceeeEEEeCCC-CcEEEEEeCCCcEEEEECCCCccc------ccc-ccccccC--------------CCCCCCCCCCc
Q 018235 165 QGCVNRIRAMTQN-PHICASWADTGHVQVWDLRSHLNA------LAE-SETIVGQ--------------GAPQVSNQSPL 222 (359)
Q Consensus 165 ~~~V~~i~~~p~~-~~~lat~s~dg~V~iwd~~~~~~~------~~~-~~~~~~~--------------~~~~~~~~~~~ 222 (359)
...|+.|+|...+ ..-+...+.|.+|++|.+....-. +.. ......+ .....-...|.
T Consensus 85 eEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~ 164 (460)
T COG5170 85 EEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPC 164 (460)
T ss_pred HHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccc
Confidence 4568888887544 334445578999999998653111 000 0000000 00000112333
Q ss_pred EEe-cCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcc--eecCcc--ccCCCCCeEEEEecCCCCCEEEEEeC
Q 018235 223 VKF-GGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATW--NVDPNP--FIGHSASVEDLQWSPTEPDVFASCSV 297 (359)
Q Consensus 223 ~~~-~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~--~~~~~~--~~~h~~~V~~v~~sp~~~~~las~s~ 297 (359)
+.+ ..|.--+.+++++.+.+ .++|++ |-.|.+|++...... ++.+.+ +..-+.-|++..|+|...++|.-.+.
T Consensus 165 rvyaNaH~yhiNSiS~NsD~e-t~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsS 242 (460)
T COG5170 165 RVYANAHPYHINSISFNSDKE-TLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSS 242 (460)
T ss_pred eeccccceeEeeeeeecCchh-eeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecC
Confidence 344 56777889999999988 788776 889999998653221 111111 11223567888999998889999999
Q ss_pred CCcEEEEECCCCC-----CceEE--e--------ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 298 DGHIAIWDTRVGK-----SALTS--F--------KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 298 Dg~I~iwD~r~~~-----~~~~~--~--------~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
.|.|+|-|+|... ..+.. + ..-.+.|..+.|+++|++++... -.+++|||.+..
T Consensus 243 kG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-----yltvkiwDvnm~ 311 (460)
T COG5170 243 KGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-----YLTVKIWDVNMA 311 (460)
T ss_pred CCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-----cceEEEEecccc
Confidence 9999999999541 11111 1 11234578899999999988653 457999998764
No 280
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.31 E-value=0.00012 Score=69.31 Aligned_cols=164 Identities=16% Similarity=0.233 Sum_probs=108.9
Q ss_pred cCCCceeeEEEeCCC-CcEEEE-----EeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEE
Q 018235 163 AHQGCVNRIRAMTQN-PHICAS-----WADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAID 236 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~-~~~lat-----~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 236 (359)
-|...|+.+.++|.. +..+|+ .+.-+.|+||.+...... ......+| -...-..+.
T Consensus 163 l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~----------------~~~a~ksF--Fkadkvqm~ 224 (566)
T KOG2315|consen 163 LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQH----------------QPVANKSF--FKADKVQMK 224 (566)
T ss_pred eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccccc----------------chhhhccc--cccceeEEE
Confidence 357888999999873 455655 566688999988741100 01111122 112223789
Q ss_pred eCCCCCCeEEEEcC--C---------CcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEE--eCCCcEEE
Q 018235 237 WNPITTGRLVTGDC--N---------SCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASC--SVDGHIAI 303 (359)
Q Consensus 237 ~sp~~~~~l~sgs~--d---------g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~--s~Dg~I~i 303 (359)
|++.+.++|+..+. | .++++.++. +....+ ++. ..++|.|++|+|++. -|+.| -.=..+.|
T Consensus 225 WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~-g~s~~V---~L~-k~GPVhdv~W~~s~~-EF~VvyGfMPAkvti 298 (566)
T KOG2315|consen 225 WNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ-GESVSV---PLL-KEGPVHDVTWSPSGR-EFAVVYGFMPAKVTI 298 (566)
T ss_pred eccCCceEEEEEEEeecCCCccccccceEEEEEec-CceEEE---ecC-CCCCceEEEECCCCC-EEEEEEecccceEEE
Confidence 99999886655443 3 367888776 234332 222 468999999999998 56554 45678999
Q ss_pred EECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 304 WDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 304 wD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
+|+|. .++..+ -.++=|++-|||+|.+++...- +...+.+-+||+..
T Consensus 299 fnlr~--~~v~df--~egpRN~~~fnp~g~ii~lAGF-GNL~G~mEvwDv~n 345 (566)
T KOG2315|consen 299 FNLRG--KPVFDF--PEGPRNTAFFNPHGNIILLAGF-GNLPGDMEVWDVPN 345 (566)
T ss_pred EcCCC--CEeEeC--CCCCccceEECCCCCEEEEeec-CCCCCceEEEeccc
Confidence 99997 566555 4667899999999998876542 22457799999865
No 281
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.30 E-value=1.8e-05 Score=77.21 Aligned_cols=140 Identities=18% Similarity=0.219 Sum_probs=108.6
Q ss_pred CCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCC---
Q 018235 165 QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPIT--- 241 (359)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~--- 241 (359)
..--+++.|+|+| +||-|+ ...|.+-|... .+.+.++..|...|+.+.|.|..
T Consensus 15 ~sN~~A~Dw~~~G--LiAygs-hslV~VVDs~s---------------------~q~iqsie~h~s~V~~VrWap~~~p~ 70 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG--LIAYGS-HSLVSVVDSRS---------------------LQLIQSIELHQSAVTSVRWAPAPSPR 70 (1062)
T ss_pred cccccccccCccc--eEEEec-CceEEEEehhh---------------------hhhhhccccCccceeEEEeccCCCch
Confidence 3346788999998 777765 45788888876 56778888899999999998742
Q ss_pred --------CCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCC---CCCEEEEEeCCCcEEEEECCCCC
Q 018235 242 --------TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPT---EPDVFASCSVDGHIAIWDTRVGK 310 (359)
Q Consensus 242 --------~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~---~~~~las~s~Dg~I~iwD~r~~~ 310 (359)
.-+||+++..|.|.+||...... . ..+..|..+|.+++|-|. ...+|++-..-.+|.+|++.++
T Consensus 71 ~llS~~~~~lliAsaD~~GrIil~d~~~~s~-~---~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG- 145 (1062)
T KOG1912|consen 71 DLLSPSSSQLLIASADISGRIILVDFVLASV-I---NWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTG- 145 (1062)
T ss_pred hccCccccceeEEeccccCcEEEEEehhhhh-h---hhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCC-
Confidence 12789999999999999987332 2 457778899999999764 4458888888899999999998
Q ss_pred CceEEeecCCCCEEEEEEcCCCC
Q 018235 311 SALTSFKAHNADVNVISWNRCWL 333 (359)
Q Consensus 311 ~~~~~~~~h~~~V~~i~~s~~~~ 333 (359)
..+...........|+.+.|...
T Consensus 146 ~k~Wk~~ys~~iLs~f~~DPfd~ 168 (1062)
T KOG1912|consen 146 EKFWKYDYSHEILSCFRVDPFDS 168 (1062)
T ss_pred ceeeccccCCcceeeeeeCCCCc
Confidence 66666655555677888888654
No 282
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.30 E-value=5.8e-05 Score=70.01 Aligned_cols=146 Identities=12% Similarity=0.114 Sum_probs=107.1
Q ss_pred ecCCCceeeEEEeCCCCcEEEEEeCCC-cEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCC
Q 018235 162 VAHQGCVNRIRAMTQNPHICASWADTG-HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI 240 (359)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg-~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~ 240 (359)
++|.+.|.-.++..++ .-++.|..|| .+-|+|... ..+..+...-+.|.++..+++
T Consensus 356 v~~~~~VrY~r~~~~~-e~~vigt~dgD~l~iyd~~~----------------------~e~kr~e~~lg~I~av~vs~d 412 (668)
T COG4946 356 VGKKGGVRYRRIQVDP-EGDVIGTNDGDKLGIYDKDG----------------------GEVKRIEKDLGNIEAVKVSPD 412 (668)
T ss_pred cCCCCceEEEEEccCC-cceEEeccCCceEEEEecCC----------------------ceEEEeeCCccceEEEEEcCC
Confidence 4688888877777766 4677788888 899999887 234456666778999999999
Q ss_pred CCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCC----CcEEEEECCCCCCceEEe
Q 018235 241 TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD----GHIAIWDTRVGKSALTSF 316 (359)
Q Consensus 241 ~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D----g~I~iwD~r~~~~~~~~~ 316 (359)
|. .++.+.....|.+.|+.++ +.. ..-....+-|.+..|||++. +||-+--+ ..|+|+|+..+ .+..+
T Consensus 413 GK-~~vvaNdr~el~vididng-nv~---~idkS~~~lItdf~~~~nsr-~iAYafP~gy~tq~Iklydm~~~--Kiy~v 484 (668)
T COG4946 413 GK-KVVVANDRFELWVIDIDNG-NVR---LIDKSEYGLITDFDWHPNSR-WIAYAFPEGYYTQSIKLYDMDGG--KIYDV 484 (668)
T ss_pred Cc-EEEEEcCceEEEEEEecCC-Cee---EecccccceeEEEEEcCCce-eEEEecCcceeeeeEEEEecCCC--eEEEe
Confidence 98 8888887888999999884 432 11223457899999999999 88876544 56999999985 34444
Q ss_pred ecCCCCEEEEEEcCCCCeEEEE
Q 018235 317 KAHNADVNVISWNRCWLAVCWH 338 (359)
Q Consensus 317 ~~h~~~V~~i~~s~~~~~l~~~ 338 (359)
....+-=.+-+|.|++++|.+-
T Consensus 485 TT~ta~DfsPaFD~d~ryLYfL 506 (668)
T COG4946 485 TTPTAYDFSPAFDPDGRYLYFL 506 (668)
T ss_pred cCCcccccCcccCCCCcEEEEE
Confidence 3333334456899999877654
No 283
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.30 E-value=2.8e-06 Score=75.56 Aligned_cols=118 Identities=17% Similarity=0.253 Sum_probs=85.8
Q ss_pred CCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCC---cceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEE
Q 018235 228 HKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDA---TWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIW 304 (359)
Q Consensus 228 h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~---~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iw 304 (359)
....|+++.|...++ ++..|..+|.|...|+|... .|. ....-|.++|++++--......|.+.+.+|.|++|
T Consensus 251 sksDVfAlQf~~s~n-Lv~~GcRngeI~~iDLR~rnqG~~~~---a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLy 326 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDN-LVFNGCRNGEIFVIDLRCRNQGNGWC---AQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLY 326 (425)
T ss_pred cchhHHHHHhcccCC-eeEecccCCcEEEEEeeecccCCCcc---eEEEEcCcchhhhhhhccccceEeeccCcCceeEe
Confidence 455789999998887 99999999999999998741 232 22334899999988766333388888999999999
Q ss_pred ECCCCCCc---eEEeecCCCCEEEEEEc-----CCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 305 DTRVGKSA---LTSFKAHNADVNVISWN-----RCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 305 D~r~~~~~---~~~~~~h~~~V~~i~~s-----~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
|.|.- ++ +.++.+| ||..+.. +...+++.... |...+||..+.|.
T Consensus 327 D~R~~-K~~~~V~qYeGH---vN~~a~l~~~v~~eeg~I~s~Gd----DcytRiWsl~~gh 379 (425)
T KOG2695|consen 327 DLRAT-KCKKSVMQYEGH---VNLSAYLPAHVKEEEGSIFSVGD----DCYTRIWSLDSGH 379 (425)
T ss_pred eehhh-hcccceeeeecc---cccccccccccccccceEEEccC----eeEEEEEecccCc
Confidence 99987 55 6666777 3333333 33445544433 8889999988764
No 284
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.27 E-value=5.4e-07 Score=88.72 Aligned_cols=149 Identities=17% Similarity=0.209 Sum_probs=98.1
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCC-cEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEe
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTG-HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg-~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (359)
...-.|..+|+-|.-+.+|..++.+.+... ...+|++.. ...+.++|.. -.++.|
T Consensus 1137 ~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s--------------------~~~~~Hsf~e----d~~vkF 1192 (1516)
T KOG1832|consen 1137 ESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASS--------------------TGGPRHSFDE----DKAVKF 1192 (1516)
T ss_pred ccccccccccccccccCCcceeeeeccccCchHHHhcccc--------------------ccCccccccc----cceeeh
Confidence 445589999999999999965555544433 678999987 3567766654 447888
Q ss_pred CCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEee
Q 018235 238 NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK 317 (359)
Q Consensus 238 sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~ 317 (359)
+.... .-+.|.+.....|||+.+...+..-.....+....-+.+.|+|... ++. .|| .+||.|.. ..++.+.
T Consensus 1193 sn~~q-~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~-LIl---ndG--vLWDvR~~-~aIh~FD 1264 (1516)
T KOG1832|consen 1193 SNSLQ-FRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDT-LIL---NDG--VLWDVRIP-EAIHRFD 1264 (1516)
T ss_pred hhhHH-HHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcc-eEe---eCc--eeeeeccH-HHHhhhh
Confidence 87754 4444555567899999885433211112222333447889999998 554 344 48999987 6676664
Q ss_pred cCCCCEEEEEEcCCCCeEEEEee
Q 018235 318 AHNADVNVISWNRCWLAVCWHLE 340 (359)
Q Consensus 318 ~h~~~V~~i~~s~~~~~l~~~~~ 340 (359)
..+. --.-.|+|+|.-++....
T Consensus 1265 ~ft~-~~~G~FHP~g~eVIINSE 1286 (1516)
T KOG1832|consen 1265 QFTD-YGGGGFHPSGNEVIINSE 1286 (1516)
T ss_pred hhee-cccccccCCCceEEeech
Confidence 4442 223369999988876654
No 285
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.26 E-value=0.00017 Score=75.41 Aligned_cols=178 Identities=12% Similarity=0.137 Sum_probs=104.4
Q ss_pred CCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCcc---ccc--ccc--ccc---cCCCCCC--------------CCC
Q 018235 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLN---ALA--ESE--TIV---GQGAPQV--------------SNQ 219 (359)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~---~~~--~~~--~~~---~~~~~~~--------------~~~ 219 (359)
-.+.|.+++|+|++ .++|..+.+|+|.+.......- .+. ..+ ..+ .+...+. ...
T Consensus 119 vd~GI~a~~WSPD~-Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~ 197 (928)
T PF04762_consen 119 VDSGILAASWSPDE-ELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPT 197 (928)
T ss_pred EcCcEEEEEECCCc-CEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCC
Confidence 36899999999999 7888888889998876443110 000 000 000 0000000 000
Q ss_pred CC---cEEecCCCCceEEEEeCCCCCCeEEEEcC---C---CcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCC
Q 018235 220 SP---LVKFGGHKDEGYAIDWNPITTGRLVTGDC---N---SCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPD 290 (359)
Q Consensus 220 ~~---~~~~~~h~~~v~~l~~sp~~~~~l~sgs~---d---g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~ 290 (359)
.| ...+. +.+.-..|+|-.+|. ++|+.+. . ..|++|+-. +.......+ -.+--..++|-|.|.
T Consensus 198 ~~~~d~~~~s-~dd~~~~ISWRGDG~-yFAVss~~~~~~~~R~iRVy~Re--G~L~stSE~---v~gLe~~l~WrPsG~- 269 (928)
T PF04762_consen 198 VPKVDEGKLS-WDDGRVRISWRGDGE-YFAVSSVEPETGSRRVIRVYSRE--GELQSTSEP---VDGLEGALSWRPSGN- 269 (928)
T ss_pred CCccccCccc-cCCCceEEEECCCCc-EEEEEEEEcCCCceeEEEEECCC--ceEEecccc---CCCccCCccCCCCCC-
Confidence 11 11222 344566899999998 8887764 2 578999853 332211111 122234689999998
Q ss_pred EEEEEeC---CCcEEEEECCCCCCceEEee--cCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 291 VFASCSV---DGHIAIWDTRVGKSALTSFK--AHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 291 ~las~s~---Dg~I~iwD~r~~~~~~~~~~--~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
+||+... ...|.+|.-.....--+.+. .....|..|.||+++.+|+.... +. |++|-...
T Consensus 270 lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~----~~-vqLWt~~N 334 (928)
T PF04762_consen 270 LIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLE----DR-VQLWTRSN 334 (928)
T ss_pred EEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEec----CC-ceEEEeeC
Confidence 8888754 34566665333222222332 45667999999999999988764 22 88886543
No 286
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.24 E-value=0.00016 Score=67.60 Aligned_cols=172 Identities=10% Similarity=0.114 Sum_probs=109.2
Q ss_pred CceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCC-CCceEEEEeCCCCCCe
Q 018235 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGH-KDEGYAIDWNPITTGR 244 (359)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~sp~~~~~ 244 (359)
....++.++|++..++++.-....|++|++......+ .+...+... ...-..+.|+|++...
T Consensus 144 ~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l-----------------~~~~~~~~~~G~GPRh~~f~pdg~~~ 206 (345)
T PF10282_consen 144 PHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKL-----------------TPVDSIKVPPGSGPRHLAFSPDGKYA 206 (345)
T ss_dssp TCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TE-----------------EEEEEEECSTTSSEEEEEE-TTSSEE
T ss_pred ccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceE-----------------EEeeccccccCCCCcEEEEcCCcCEE
Confidence 4467899999997777776677899999998732111 111222222 2345689999999856
Q ss_pred EEEEcCCCcEEEEecCC-CCccee--cCcccc-C--CCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCce---EE
Q 018235 245 LVTGDCNSCIYLWEPAS-DATWNV--DPNPFI-G--HSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL---TS 315 (359)
Q Consensus 245 l~sgs~dg~I~lwd~~~-~~~~~~--~~~~~~-~--h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~---~~ 315 (359)
+++.-.++.|.++++.. .+.+.. ....+. + .......|.++|+++.++++.....+|.+|++......+ ..
T Consensus 207 Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~ 286 (345)
T PF10282_consen 207 YVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQT 286 (345)
T ss_dssp EEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEE
T ss_pred EEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEE
Confidence 67777888999999872 222211 001110 1 123678999999999788888889999999994321222 23
Q ss_pred eecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeC--cCCc
Q 018235 316 FKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDC--SRGE 357 (359)
Q Consensus 316 ~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~--~~g~ 357 (359)
+.........+.++|+|++|+.+... .+.|.+|+. .+|.
T Consensus 287 ~~~~G~~Pr~~~~s~~g~~l~Va~~~---s~~v~vf~~d~~tG~ 327 (345)
T PF10282_consen 287 VPTGGKFPRHFAFSPDGRYLYVANQD---SNTVSVFDIDPDTGK 327 (345)
T ss_dssp EEESSSSEEEEEE-TTSSEEEEEETT---TTEEEEEEEETTTTE
T ss_pred EeCCCCCccEEEEeCCCCEEEEEecC---CCeEEEEEEeCCCCc
Confidence 34444558999999999999987653 556777754 4554
No 287
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.19 E-value=5.1e-05 Score=72.43 Aligned_cols=117 Identities=16% Similarity=0.125 Sum_probs=81.1
Q ss_pred EEEEeCCCCCCeEEEE----cCCCc----EEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEE
Q 018235 233 YAIDWNPITTGRLVTG----DCNSC----IYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIW 304 (359)
Q Consensus 233 ~~l~~sp~~~~~l~sg----s~dg~----I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iw 304 (359)
.++.||...+..+.|. +.+|. -++|++.. .+......+-....+.|.+++++|++. .|+.|+.||+|.+|
T Consensus 209 l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r-~klqrvsvtsipL~s~v~~ca~sp~E~-kLvlGC~DgSiiLy 286 (545)
T PF11768_consen 209 LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSR-NKLQRVSVTSIPLPSQVICCARSPSED-KLVLGCEDGSIILY 286 (545)
T ss_pred EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeec-CceeEEEEEEEecCCcceEEecCcccc-eEEEEecCCeEEEE
Confidence 4666766555455443 22333 24566643 221111122235778999999999999 99999999999999
Q ss_pred ECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 305 DTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 305 D~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
|.+.+ +.....+.-..+.++|+|+|.+++.+.. -+.+.+||....++
T Consensus 287 D~~~~---~t~~~ka~~~P~~iaWHp~gai~~V~s~----qGelQ~FD~ALspi 333 (545)
T PF11768_consen 287 DTTRG---VTLLAKAEFIPTLIAWHPDGAIFVVGSE----QGELQCFDMALSPI 333 (545)
T ss_pred EcCCC---eeeeeeecccceEEEEcCCCcEEEEEcC----CceEEEEEeecCcc
Confidence 99875 2223334556789999999999998876 68899999887765
No 288
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=6.1e-06 Score=74.82 Aligned_cols=92 Identities=14% Similarity=0.209 Sum_probs=77.1
Q ss_pred CCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCC
Q 018235 220 SPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG 299 (359)
Q Consensus 220 ~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg 299 (359)
++...+.+|...|..|+|||..+|+|..++.+..|+|.|+++ ...+ ..+..| ..+++++|.-++.+++.+|-.+|
T Consensus 184 kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet-~~~v---ssy~a~-~~~wSC~wDlde~h~IYaGl~nG 258 (463)
T KOG1645|consen 184 KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLET-SCVV---SSYIAY-NQIWSCCWDLDERHVIYAGLQNG 258 (463)
T ss_pred chhhcccccchhhhhhccCccccceeeeeccCceEEEEeccc-ceee---eheecc-CCceeeeeccCCcceeEEeccCc
Confidence 334466777888999999999999999999999999999987 3333 566667 88999999999999999999999
Q ss_pred cEEEEECCCCCCceEEe
Q 018235 300 HIAIWDTRVGKSALTSF 316 (359)
Q Consensus 300 ~I~iwD~r~~~~~~~~~ 316 (359)
.|.|||+|....++..+
T Consensus 259 ~VlvyD~R~~~~~~~e~ 275 (463)
T KOG1645|consen 259 MVLVYDMRQPEGPLMEL 275 (463)
T ss_pred eEEEEEccCCCchHhhh
Confidence 99999999875444444
No 289
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.18 E-value=5.8e-05 Score=72.07 Aligned_cols=108 Identities=13% Similarity=0.202 Sum_probs=79.3
Q ss_pred EEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEE
Q 018235 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAID 236 (359)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 236 (359)
...+.++++..|.+++++|.. ..++.|+.||.|.+||.... +..+..+.-....++
T Consensus 251 vsvtsipL~s~v~~ca~sp~E-~kLvlGC~DgSiiLyD~~~~-----------------------~t~~~ka~~~P~~ia 306 (545)
T PF11768_consen 251 VSVTSIPLPSQVICCARSPSE-DKLVLGCEDGSIILYDTTRG-----------------------VTLLAKAEFIPTLIA 306 (545)
T ss_pred EEEEEEecCCcceEEecCccc-ceEEEEecCCeEEEEEcCCC-----------------------eeeeeeecccceEEE
Confidence 446778999999999999998 78889999999999998762 122222233567899
Q ss_pred eCCCCCCeEEEEcCCCcEEEEecCCCC------------cceecCccccCCCCCeEEEEecCCCC
Q 018235 237 WNPITTGRLVTGDCNSCIYLWEPASDA------------TWNVDPNPFIGHSASVEDLQWSPTEP 289 (359)
Q Consensus 237 ~sp~~~~~l~sgs~dg~I~lwd~~~~~------------~~~~~~~~~~~h~~~V~~v~~sp~~~ 289 (359)
|+|+|. .+++|+..|.|.+||+.-.. +.......+..+......++|++...
T Consensus 307 WHp~ga-i~~V~s~qGelQ~FD~ALspi~~qLlsEd~~P~~~L~Ls~yf~~~~~L~~iqW~~~~~ 370 (545)
T PF11768_consen 307 WHPDGA-IFVVGSEQGELQCFDMALSPIKMQLLSEDATPKSTLQLSKYFRVSSSLVHIQWAPAPQ 370 (545)
T ss_pred EcCCCc-EEEEEcCCceEEEEEeecCccceeeccccCCCccEEeeehhccCcchhheeEeccCCC
Confidence 999998 99999999999999986421 11112233345666777788885543
No 290
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.17 E-value=0.00052 Score=64.37 Aligned_cols=119 Identities=15% Similarity=0.220 Sum_probs=84.6
Q ss_pred CCCCceEEEEeCCCCCCeEEE--EcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEe---CCCcE
Q 018235 227 GHKDEGYAIDWNPITTGRLVT--GDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS---VDGHI 301 (359)
Q Consensus 227 ~h~~~v~~l~~sp~~~~~l~s--gs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s---~Dg~I 301 (359)
.-.++|+..+|+|.+. .+++ |-..-.+.++|++.. . .+....+.-+.+-|+|.+. +++.++ .-|.|
T Consensus 272 ~~~~pVhdf~W~p~S~-~F~vi~g~~pa~~s~~~lr~N--l-----~~~~Pe~~rNT~~fsp~~r-~il~agF~nl~gni 342 (561)
T COG5354 272 DLKDPVHDFTWEPLSS-RFAVISGYMPASVSVFDLRGN--L-----RFYFPEQKRNTIFFSPHER-YILFAGFDNLQGNI 342 (561)
T ss_pred cccccceeeeecccCC-ceeEEecccccceeecccccc--e-----EEecCCcccccccccCccc-EEEEecCCccccce
Confidence 5578999999999998 5544 457888999999862 2 2344455667788999999 555444 35789
Q ss_pred EEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeee--cccceEEEEEeCcCC
Q 018235 302 AIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEV--MMEHFLFMILDCSRG 356 (359)
Q Consensus 302 ~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~--~~~d~~i~iwd~~~g 356 (359)
-|||....-.++..+.+.+. .-+.|+|+++++..+..+ .+.|+.++||++...
T Consensus 343 ~i~~~~~rf~~~~~~~~~n~--s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 343 EIFDPAGRFKVAGAFNGLNT--SYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred EEeccCCceEEEEEeecCCc--eEeeccCCceEEEecCCCcccccCcceEEEEecCc
Confidence 99998775233335544433 446899999999877544 345899999998654
No 291
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.16 E-value=8.8e-05 Score=72.94 Aligned_cols=150 Identities=17% Similarity=0.236 Sum_probs=100.4
Q ss_pred EEecCCCceeeEEEeCC-------------CCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEec
Q 018235 160 RKVAHQGCVNRIRAMTQ-------------NPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG 226 (359)
Q Consensus 160 ~~~~H~~~V~~i~~~p~-------------~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (359)
.+-.|.|.|.-..+.-. | .++|||+.||+|.|..+.+ .+...++.
T Consensus 53 ~~GtH~g~v~~~~~~~~~~~~~~~s~~~~~G-ey~asCS~DGkv~I~sl~~---------------------~~~~~~~d 110 (846)
T KOG2066|consen 53 ALGTHRGAVYLTTCQGNPKTNFDHSSSILEG-EYVASCSDDGKVVIGSLFT---------------------DDEITQYD 110 (846)
T ss_pred eeccccceEEEEecCCcccccccccccccCC-ceEEEecCCCcEEEeeccC---------------------CccceeEe
Confidence 34457777776665444 4 7999999999999998876 23333343
Q ss_pred CCCCceEEEEeCCC----CCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEE
Q 018235 227 GHKDEGYAIDWNPI----TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIA 302 (359)
Q Consensus 227 ~h~~~v~~l~~sp~----~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~ 302 (359)
-+ .++.+++++|+ ...++++|+..| +.++.-+-.+.+. ...+....++|.+++|. |. ++|=++.+| |+
T Consensus 111 f~-rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~--~v~l~~~eG~I~~i~W~--g~-lIAWand~G-v~ 182 (846)
T KOG2066|consen 111 FK-RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKD--SVVLSEGEGPIHSIKWR--GN-LIAWANDDG-VK 182 (846)
T ss_pred cC-CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCcc--ceeeecCccceEEEEec--Cc-EEEEecCCC-cE
Confidence 33 37889999987 334899999999 7777644333332 12345567899999995 44 888888776 89
Q ss_pred EEECCCCCCceEEeecCCC------CEEEEEEcCCCCeEE-EEee
Q 018235 303 IWDTRVGKSALTSFKAHNA------DVNVISWNRCWLAVC-WHLE 340 (359)
Q Consensus 303 iwD~r~~~~~~~~~~~h~~------~V~~i~~s~~~~~l~-~~~~ 340 (359)
+||+.+. +.+..+..... .-..+.|.+...+++ |+..
T Consensus 183 vyd~~~~-~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d~ 226 (846)
T KOG2066|consen 183 VYDTPTR-QRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGDS 226 (846)
T ss_pred EEecccc-ceeeccCCCCCCCCcccCCCceEecCCCeEEEecCCe
Confidence 9999986 44444422112 234678888776554 5543
No 292
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.15 E-value=2.8e-06 Score=83.83 Aligned_cols=156 Identities=13% Similarity=0.121 Sum_probs=111.5
Q ss_pred EEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCC
Q 018235 160 RKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (359)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp 239 (359)
.+..|....+|++|+-.. +.++.|+-.|.|++|++.+ +.......+|...++-+.-+.
T Consensus 1096 ~frd~~~~fTc~afs~~~-~hL~vG~~~Geik~~nv~s---------------------G~~e~s~ncH~SavT~vePs~ 1153 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGT-NHLAVGSHAGEIKIFNVSS---------------------GSMEESVNCHQSAVTLVEPSV 1153 (1516)
T ss_pred hhhccccceeeEEeecCC-ceEEeeeccceEEEEEccC---------------------ccccccccccccccccccccC
Confidence 344688999999999877 7889999999999999988 555667889999999999999
Q ss_pred CCCCeEEEEcCCC-cEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe--
Q 018235 240 ITTGRLVTGDCNS-CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF-- 316 (359)
Q Consensus 240 ~~~~~l~sgs~dg-~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~-- 316 (359)
+|..+|.+++... ...+|+....+... +.|.+ -.++.|+.... .-+.|..-....|||+.+. .++.++
T Consensus 1154 dgs~~Ltsss~S~PlsaLW~~~s~~~~~---Hsf~e----d~~vkFsn~~q-~r~~gt~~d~a~~YDvqT~-~~l~tylt 1224 (1516)
T KOG1832|consen 1154 DGSTQLTSSSSSSPLSALWDASSTGGPR---HSFDE----DKAVKFSNSLQ-FRALGTEADDALLYDVQTC-SPLQTYLT 1224 (1516)
T ss_pred CcceeeeeccccCchHHHhccccccCcc---ccccc----cceeehhhhHH-HHHhcccccceEEEecccC-cHHHHhcC
Confidence 9984454444444 46799987643332 44443 34678877654 2233333356889999998 555553
Q ss_pred --ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 317 --KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 317 --~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
.+.+-.-|+..|||+..+++++.- +||.+.
T Consensus 1225 ~~~~~~y~~n~a~FsP~D~LIlndGv---------LWDvR~ 1256 (1516)
T KOG1832|consen 1225 DTVTSSYSNNLAHFSPCDTLILNDGV---------LWDVRI 1256 (1516)
T ss_pred cchhhhhhccccccCCCcceEeeCce---------eeeecc
Confidence 122334488999999998887753 677664
No 293
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.14 E-value=0.00084 Score=60.53 Aligned_cols=173 Identities=12% Similarity=0.076 Sum_probs=108.5
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEe-C--CCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEE
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWA-D--TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAI 235 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s-~--dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 235 (359)
.++..+.+..+-+.++|.+. .+.++. . .|.|..|.+......+.. .-.....++ +-.-+
T Consensus 33 ~~~v~~~~nptyl~~~~~~~-~LY~v~~~~~~ggvaay~iD~~~G~Lt~---------------ln~~~~~g~--~p~yv 94 (346)
T COG2706 33 LQLVAELGNPTYLAVNPDQR-HLYVVNEPGEEGGVAAYRIDPDDGRLTF---------------LNRQTLPGS--PPCYV 94 (346)
T ss_pred hhhccccCCCceEEECCCCC-EEEEEEecCCcCcEEEEEEcCCCCeEEE---------------eeccccCCC--CCeEE
Confidence 45567788888899999884 444443 3 688888888762111100 000111222 22678
Q ss_pred EeCCCCCCeEEEEc-CCCcEEEEecCCCCcceecCccccCCCCC----------eEEEEecCCCCCEEEEEe-CCCcEEE
Q 018235 236 DWNPITTGRLVTGD-CNSCIYLWEPASDATWNVDPNPFIGHSAS----------VEDLQWSPTEPDVFASCS-VDGHIAI 303 (359)
Q Consensus 236 ~~sp~~~~~l~sgs-~dg~I~lwd~~~~~~~~~~~~~~~~h~~~----------V~~v~~sp~~~~~las~s-~Dg~I~i 303 (359)
+.+++++ +|+++. ..|.|.++-++..+.+.. ......|... +....+.|++. +++++. .--.|.+
T Consensus 95 svd~~g~-~vf~AnY~~g~v~v~p~~~dG~l~~-~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~-~l~v~DLG~Dri~~ 171 (346)
T COG2706 95 SVDEDGR-FVFVANYHSGSVSVYPLQADGSLQP-VVQVVKHTGSGPHERQESPHVHSANFTPDGR-YLVVPDLGTDRIFL 171 (346)
T ss_pred EECCCCC-EEEEEEccCceEEEEEcccCCcccc-ceeeeecCCCCCCccccCCccceeeeCCCCC-EEEEeecCCceEEE
Confidence 9999998 666654 457899999977544321 1223335444 88899999999 555543 4456999
Q ss_pred EECCCCCC-ceE-EeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 304 WDTRVGKS-ALT-SFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 304 wD~r~~~~-~~~-~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
|++..+.- +.. ..-.-.+.-..|.|+|++++...-+. .+..|.+|....
T Consensus 172 y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~E---L~stV~v~~y~~ 222 (346)
T COG2706 172 YDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNE---LNSTVDVLEYNP 222 (346)
T ss_pred EEcccCccccccccccCCCCCcceEEEcCCCcEEEEEec---cCCEEEEEEEcC
Confidence 99986521 111 11234566789999999997766554 267788887665
No 294
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=1.7e-05 Score=74.66 Aligned_cols=136 Identities=21% Similarity=0.258 Sum_probs=92.0
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEe---cCCCC
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF---GGHKD 230 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~h~~ 230 (359)
...+..+...|+.+|+.+.|..+. ..+++ -||-|++||--. +.++... ..|..
T Consensus 773 tsaCQfTY~aHkk~i~~igfL~~l-r~i~S--cD~giHlWDPFi---------------------gr~Laq~~dapk~~a 828 (1034)
T KOG4190|consen 773 TSACQFTYQAHKKPIHDIGFLADL-RSIAS--CDGGIHLWDPFI---------------------GRLLAQMEDAPKEGA 828 (1034)
T ss_pred cceeeeEhhhccCcccceeeeecc-ceeee--ccCcceeecccc---------------------cchhHhhhcCcccCC
Confidence 556778888999999999998876 55654 479999999654 2222211 11222
Q ss_pred ceEEEEeCC--CCCCeEEEEcCCCcEEEEecCCCCcceecCccc--cCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEEC
Q 018235 231 EGYAIDWNP--ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPF--IGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDT 306 (359)
Q Consensus 231 ~v~~l~~sp--~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~--~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~ 306 (359)
+..+..-+ +..-.++.|+...+|+++|.|. ..|....+.. .+....+.+++..|.|. .+|.+-.+|+|.+.|.
T Consensus 829 -~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRs-ce~~~E~kVcna~~Pna~~R~iaVa~~GN-~lAa~LSnGci~~LDa 905 (1034)
T KOG4190|consen 829 -GGNIKCLENVDRHILIAGCSAESTVKLFDARS-CEWTCELKVCNAPGPNALTRAIAVADKGN-KLAAALSNGCIAILDA 905 (1034)
T ss_pred -CceeEecccCcchheeeeccchhhheeeeccc-ccceeeEEeccCCCCchheeEEEeccCcc-hhhHHhcCCcEEEEec
Confidence 22222222 2331344447788999999987 5555333333 44567899999999998 9999999999999999
Q ss_pred CCCCCceEEee
Q 018235 307 RVGKSALTSFK 317 (359)
Q Consensus 307 r~~~~~~~~~~ 317 (359)
|++ +.+-.+.
T Consensus 906 R~G-~vINswr 915 (1034)
T KOG4190|consen 906 RNG-KVINSWR 915 (1034)
T ss_pred CCC-ceeccCC
Confidence 998 5444443
No 295
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.05 E-value=0.00037 Score=74.09 Aligned_cols=180 Identities=12% Similarity=0.066 Sum_probs=101.8
Q ss_pred eeeEEEeCCCCcEEEEEeCCCcEEEEECCCCcc-ccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEE
Q 018235 168 VNRIRAMTQNPHICASWADTGHVQVWDLRSHLN-ALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLV 246 (359)
Q Consensus 168 V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~ 246 (359)
-..|++.+++..++++-..++.|+++|+....- .+...+...... .......... -..-++++++|.+..+++
T Consensus 626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~-----~gg~~~~~~~-ln~P~gVa~dp~~g~LyV 699 (1057)
T PLN02919 626 PQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDY-----QGGKKGTSQV-LNSPWDVCFEPVNEKVYI 699 (1057)
T ss_pred CcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCC-----CCChhhhHhh-cCCCeEEEEecCCCeEEE
Confidence 356677776634555555667888888765211 111000000000 0000000000 012247899995543778
Q ss_pred EEcCCCcEEEEecCCCCccee-c----CccccC------CCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEE
Q 018235 247 TGDCNSCIYLWEPASDATWNV-D----PNPFIG------HSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS 315 (359)
Q Consensus 247 sgs~dg~I~lwd~~~~~~~~~-~----~~~~~~------h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~ 315 (359)
+.+.++.|++|+...+ .... . .....+ .-.....|+|+|++..++++-+.++.|++||+.++...+..
T Consensus 700 ad~~~~~I~v~d~~~g-~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~ 778 (1057)
T PLN02919 700 AMAGQHQIWEYNISDG-VTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLA 778 (1057)
T ss_pred EECCCCeEEEEECCCC-eEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEE
Confidence 8888899999998653 2110 0 000111 11345679999998868888888999999999875211100
Q ss_pred ------------eecC--------CCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 316 ------------FKAH--------NADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 316 ------------~~~h--------~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
+..+ -.....++++++|.+++.+.. ++.|++|+..++.+
T Consensus 779 gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~----N~rIrviD~~tg~v 837 (1057)
T PLN02919 779 GGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSY----NHKIKKLDPATKRV 837 (1057)
T ss_pred ecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECC----CCEEEEEECCCCeE
Confidence 0000 112357899999987777755 78899999877653
No 296
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.02 E-value=0.0012 Score=57.85 Aligned_cols=168 Identities=10% Similarity=0.088 Sum_probs=98.5
Q ss_pred ceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecC-CCCceEEEEeCCCC----
Q 018235 167 CVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGG-HKDEGYAIDWNPIT---- 241 (359)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~sp~~---- 241 (359)
.=.+++|+|++ .++|.+...|+|++||+.......- .|...+.+ -...|-+|.|-...
T Consensus 45 QWRkl~WSpD~-tlLa~a~S~G~i~vfdl~g~~lf~I----------------~p~~~~~~d~~~Aiagl~Fl~~~~s~~ 107 (282)
T PF15492_consen 45 QWRKLAWSPDC-TLLAYAESTGTIRVFDLMGSELFVI----------------PPAMSFPGDLSDAIAGLIFLEYKKSAQ 107 (282)
T ss_pred hheEEEECCCC-cEEEEEcCCCeEEEEecccceeEEc----------------CcccccCCccccceeeeEeeccccccc
Confidence 45678999999 8999999999999999985221111 11111111 12244455553322
Q ss_pred -CCeEEEEcCCCcEEEEecCCC--CcceecCcc--ccC-CCCCeEEEEecCCCCCEEEEEe-CCC----------cEEEE
Q 018235 242 -TGRLVTGDCNSCIYLWEPASD--ATWNVDPNP--FIG-HSASVEDLQWSPTEPDVFASCS-VDG----------HIAIW 304 (359)
Q Consensus 242 -~~~l~sgs~dg~I~lwd~~~~--~~~~~~~~~--~~~-h~~~V~~v~~sp~~~~~las~s-~Dg----------~I~iw 304 (359)
...|+.-...|.++-|-+..+ .... .... |.. +...|+++.|+|.+. +|+.|+ ... -+.-|
T Consensus 108 ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~-e~hsfsf~~~yp~Gi~~~vy~p~h~-LLlVgG~~~~~~~~s~a~~~GLtaW 185 (282)
T PF15492_consen 108 WSYELLVINYRGQLRSYLVSVGTNQGYQ-ENHSFSFSSHYPHGINSAVYHPKHR-LLLVGGCEQNQDGMSKASSCGLTAW 185 (282)
T ss_pred cceeEEEEeccceeeeEEEEcccCCcce-eeEEEEecccCCCceeEEEEcCCCC-EEEEeccCCCCCccccccccCceEE
Confidence 125666667887776665321 1110 0112 222 467999999999998 555543 221 25556
Q ss_pred ECCCCC----------C---------ceEEe---------ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 305 DTRVGK----------S---------ALTSF---------KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 305 D~r~~~----------~---------~~~~~---------~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
.+-... . .+..+ ......|..|+.+|+|.+|++-.- .+.|.+|++-.-
T Consensus 186 RiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~----sG~lsLW~iPsL 261 (282)
T PF15492_consen 186 RILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHF----SGSLSLWEIPSL 261 (282)
T ss_pred EEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEc----CCeEEEEecCcc
Confidence 543320 0 00000 112456899999999999987765 788999997654
Q ss_pred c
Q 018235 357 E 357 (359)
Q Consensus 357 ~ 357 (359)
.
T Consensus 262 ~ 262 (282)
T PF15492_consen 262 R 262 (282)
T ss_pred h
Confidence 3
No 297
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.96 E-value=0.001 Score=61.95 Aligned_cols=124 Identities=11% Similarity=0.081 Sum_probs=96.3
Q ss_pred cCCCCceEEEEeCCCCCCeEEEEcCCC-cEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEE
Q 018235 226 GGHKDEGYAIDWNPITTGRLVTGDCNS-CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIW 304 (359)
Q Consensus 226 ~~h~~~v~~l~~sp~~~~~l~sgs~dg-~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iw 304 (359)
.+|...|.-..+..+.+ -++.|..|| .+-|+|... +.. ..+...-+.|.++..+|+|+ .++.+.....|-+.
T Consensus 356 v~~~~~VrY~r~~~~~e-~~vigt~dgD~l~iyd~~~-~e~----kr~e~~lg~I~av~vs~dGK-~~vvaNdr~el~vi 428 (668)
T COG4946 356 VGKKGGVRYRRIQVDPE-GDVIGTNDGDKLGIYDKDG-GEV----KRIEKDLGNIEAVKVSPDGK-KVVVANDRFELWVI 428 (668)
T ss_pred cCCCCceEEEEEccCCc-ceEEeccCCceEEEEecCC-ceE----EEeeCCccceEEEEEcCCCc-EEEEEcCceEEEEE
Confidence 36666777777777777 788899999 899999976 332 34566778999999999999 78888888889999
Q ss_pred ECCCCCCceEEe-ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 305 DTRVGKSALTSF-KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 305 D~r~~~~~~~~~-~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
|+.++ . +..+ +...+-|..+.|+|++++++.+.-.+-.-..|+++|+..+.+
T Consensus 429 didng-n-v~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Ki 481 (668)
T COG4946 429 DIDNG-N-VRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKI 481 (668)
T ss_pred EecCC-C-eeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeE
Confidence 99997 3 3333 445667999999999999998865433345689999887654
No 298
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.91 E-value=0.0014 Score=68.67 Aligned_cols=174 Identities=15% Similarity=0.205 Sum_probs=104.8
Q ss_pred CCeEEEEEecCCCceeeEEEeCCCCcEEEEEeC---CCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCC
Q 018235 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWAD---TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKD 230 (359)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~---dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 230 (359)
+..+.....+-.|--..++|.|.| ++||+.-. ...|.+|.-+... .+.....+.....
T Consensus 245 eG~L~stSE~v~gLe~~l~WrPsG-~lIA~~q~~~~~~~VvFfErNGLr------------------hgeF~l~~~~~~~ 305 (928)
T PF04762_consen 245 EGELQSTSEPVDGLEGALSWRPSG-NLIASSQRLPDRHDVVFFERNGLR------------------HGEFTLRFDPEEE 305 (928)
T ss_pred CceEEeccccCCCccCCccCCCCC-CEEEEEEEcCCCcEEEEEecCCcE------------------eeeEecCCCCCCc
Confidence 444555544555666678999999 78887553 3445555544310 1121111223445
Q ss_pred ceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECC---
Q 018235 231 EGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTR--- 307 (359)
Q Consensus 231 ~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r--- 307 (359)
.+..|.||+++. .||..-.| .|.+|-..+ -.|..+..........+..+.|+|..+..|...+.+|.+..+++.
T Consensus 306 ~v~~l~Wn~ds~-iLAv~~~~-~vqLWt~~N-YHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v 382 (928)
T PF04762_consen 306 KVIELAWNSDSE-ILAVWLED-RVQLWTRSN-YHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDV 382 (928)
T ss_pred eeeEEEECCCCC-EEEEEecC-CceEEEeeC-CEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEE
Confidence 789999999998 88887644 499999866 455433222223334455599999888777777776666554332
Q ss_pred -CCC-----------------------------CceEEe-ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeC
Q 018235 308 -VGK-----------------------------SALTSF-KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDC 353 (359)
Q Consensus 308 -~~~-----------------------------~~~~~~-~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~ 353 (359)
.+. .|+... -...+.|+.++|++.+..++.-.. ++.|.+|..
T Consensus 383 ~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~----d~~l~~~~~ 455 (928)
T PF04762_consen 383 SRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTS----DGSLSIYEW 455 (928)
T ss_pred EecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEEC----CCCEEEEEe
Confidence 110 011101 123578999999999876555444 666777763
No 299
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=97.85 E-value=0.0042 Score=56.14 Aligned_cols=162 Identities=10% Similarity=0.123 Sum_probs=102.5
Q ss_pred eeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCc----------eEEEEeC
Q 018235 169 NRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDE----------GYAIDWN 238 (359)
Q Consensus 169 ~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~----------v~~l~~s 238 (359)
+-+++++++..++++--..|.|.++-+...... .+...+..|... ++...+.
T Consensus 92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l------------------~~~v~~~~h~g~~p~~rQ~~~h~H~a~~t 153 (346)
T COG2706 92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSL------------------QPVVQVVKHTGSGPHERQESPHVHSANFT 153 (346)
T ss_pred eEEEECCCCCEEEEEEccCceEEEEEcccCCcc------------------ccceeeeecCCCCCCccccCCccceeeeC
Confidence 678888888545555456789999998774211 111112223333 7789999
Q ss_pred CCCCCeEEEEcCC-CcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEee
Q 018235 239 PITTGRLVTGDCN-SCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK 317 (359)
Q Consensus 239 p~~~~~l~sgs~d-g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~ 317 (359)
|+++ +|++.+-. -.|.+|++.. +...........-...-.-|.|||+++...+.+--+++|-+|........+..++
T Consensus 154 P~~~-~l~v~DLG~Dri~~y~~~d-g~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ 231 (346)
T COG2706 154 PDGR-YLVVPDLGTDRIFLYDLDD-GKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQ 231 (346)
T ss_pred CCCC-EEEEeecCCceEEEEEccc-CccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEee
Confidence 9998 77777532 3689999975 4322111111233456677999999995555666799999999887422232222
Q ss_pred cC---------CCCEEEEEEcCCCCeEEEEeeecccceEEEEEeC
Q 018235 318 AH---------NADVNVISWNRCWLAVCWHLEVMMEHFLFMILDC 353 (359)
Q Consensus 318 ~h---------~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~ 353 (359)
.+ ......|..+++|++|..+.+. ...|-++.+
T Consensus 232 ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg---~dsI~~f~V 273 (346)
T COG2706 232 TIDTLPEDFTGTNWAAAIHISPDGRFLYASNRG---HDSIAVFSV 273 (346)
T ss_pred eeccCccccCCCCceeEEEECCCCCEEEEecCC---CCeEEEEEE
Confidence 11 3346778999999999877653 445555543
No 300
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.80 E-value=0.0021 Score=61.46 Aligned_cols=165 Identities=10% Similarity=0.094 Sum_probs=98.7
Q ss_pred CCCceeeEEEeCCCCcEEEEEeCC---CcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCC
Q 018235 164 HQGCVNRIRAMTQNPHICASWADT---GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI 240 (359)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~d---g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~ 240 (359)
-...+..-+|+|.+..+....-.. ..++++++... ....+..+.++. ...+|+|+
T Consensus 191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g-------------------~~~~i~~~~g~~---~~P~fspD 248 (425)
T COG0823 191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTG-------------------KRPVILNFNGNN---GAPAFSPD 248 (425)
T ss_pred cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCC-------------------ccceeeccCCcc---CCccCCCC
Confidence 345666778999885544443322 35888998872 122333444544 47899999
Q ss_pred CCCeEEEEcCCCcEEEE--ecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeec
Q 018235 241 TTGRLVTGDCNSCIYLW--EPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA 318 (359)
Q Consensus 241 ~~~~l~sgs~dg~I~lw--d~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~ 318 (359)
++.++++...||...|| |+... . . ..+..-.+.-..-.|+|+|..+..+.+..|.-.||-..........+..
T Consensus 249 G~~l~f~~~rdg~~~iy~~dl~~~-~-~---~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~ 323 (425)
T COG0823 249 GSKLAFSSSRDGSPDIYLMDLDGK-N-L---PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTF 323 (425)
T ss_pred CCEEEEEECCCCCccEEEEcCCCC-c-c---eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeec
Confidence 99777788888875555 55442 2 2 1233222222356899999977677777777666644433233344433
Q ss_pred CCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 319 HNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 319 h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
....-..-.|+|+|..+++.....+ ...|.+.+..++
T Consensus 324 ~~~~~~~p~~SpdG~~i~~~~~~~g-~~~i~~~~~~~~ 360 (425)
T COG0823 324 SGGGNSNPVWSPDGDKIVFESSSGG-QWDIDKNDLASG 360 (425)
T ss_pred cCCCCcCccCCCCCCEEEEEeccCC-ceeeEEeccCCC
Confidence 3322236789999999998874322 233555555444
No 301
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.77 E-value=8e-06 Score=78.19 Aligned_cols=168 Identities=17% Similarity=0.251 Sum_probs=110.1
Q ss_pred ecCCCceeeEEEeCCCCcEEEEEe----CCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEe
Q 018235 162 VAHQGCVNRIRAMTQNPHICASWA----DTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (359)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s----~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (359)
-+|....++++|++-..+++|.|- .+..+.|||+....... ...+.+.- +-.....+++|
T Consensus 99 p~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvP---------------ke~~~fs~-~~l~gqns~cw 162 (783)
T KOG1008|consen 99 PGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVP---------------KESPLFSS-STLDGQNSVCW 162 (783)
T ss_pred ccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCC---------------cccccccc-ccccCcccccc
Confidence 367889999999998767787764 35778999998743211 11222211 22334558999
Q ss_pred CCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEE-CCCCCCceEEe
Q 018235 238 NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWD-TRVGKSALTSF 316 (359)
Q Consensus 238 sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD-~r~~~~~~~~~ 316 (359)
-.+.+ ++++|.....++++|+|.... +...-.+..|..+...|...+++++-. ||.|.+|| .|.-..++..+
T Consensus 163 lrd~k-lvlaGm~sr~~~ifdlRqs~~-----~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i 235 (783)
T KOG1008|consen 163 LRDTK-LVLAGMTSRSVHIFDLRQSLD-----SVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQII 235 (783)
T ss_pred ccCcc-hhhcccccchhhhhhhhhhhh-----hhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHH
Confidence 97777 899999899999999985221 111223456677888896665887766 99999999 55554455444
Q ss_pred ecCC----CCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 317 KAHN----ADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 317 ~~h~----~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
.... ..+..++|+|...-++..+. +.-.+|+++++.
T Consensus 236 ~~~~N~~~~~l~~~aycPtrtglla~l~--RdS~tIrlydi~ 275 (783)
T KOG1008|consen 236 LRNENKKPKQLFALAYCPTRTGLLAVLS--RDSITIRLYDIC 275 (783)
T ss_pred hhCCCCcccceeeEEeccCCcchhhhhc--cCcceEEEeccc
Confidence 2122 23889999997765444332 124667777654
No 302
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.77 E-value=0.0004 Score=65.76 Aligned_cols=137 Identities=18% Similarity=0.276 Sum_probs=88.4
Q ss_pred eeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEE
Q 018235 168 VNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVT 247 (359)
Q Consensus 168 V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~s 247 (359)
-+-++|+|.| .+++|-...| |.+|--.. -..+..| .|. .+.-++|||... +|+|
T Consensus 213 etyv~wSP~G-TYL~t~Hk~G-I~lWGG~~---------------------f~r~~RF-~Hp-~Vq~idfSP~Ek-YLVT 266 (698)
T KOG2314|consen 213 ETYVRWSPKG-TYLVTFHKQG-IALWGGES---------------------FDRIQRF-YHP-GVQFIDFSPNEK-YLVT 266 (698)
T ss_pred eeeEEecCCc-eEEEEEeccc-eeeecCcc---------------------HHHHHhc-cCC-CceeeecCCccc-eEEE
Confidence 3567899999 7888866655 77886544 1222333 243 467788999887 8887
Q ss_pred Ec----------CC-CcEEEEecCCCCcceecCccccC--CCCCe-EEEEecCCCCCEEEEEeCCCcEEEEECCCCCCce
Q 018235 248 GD----------CN-SCIYLWEPASDATWNVDPNPFIG--HSASV-EDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL 313 (359)
Q Consensus 248 gs----------~d-g~I~lwd~~~~~~~~~~~~~~~~--h~~~V-~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~ 313 (359)
=+ ++ ..|+|||+++ |... +.|.. ....+ .-..||.++. ++|.-.. .+|.|++..+. .++
T Consensus 267 ~s~~p~~~~~~d~e~~~l~IWDI~t-G~lk---rsF~~~~~~~~~WP~frWS~DdK-y~Arm~~-~sisIyEtpsf-~ll 339 (698)
T KOG2314|consen 267 YSPEPIIVEEDDNEGQQLIIWDIAT-GLLK---RSFPVIKSPYLKWPIFRWSHDDK-YFARMTG-NSISIYETPSF-MLL 339 (698)
T ss_pred ecCCccccCcccCCCceEEEEEccc-cchh---cceeccCCCccccceEEeccCCc-eeEEecc-ceEEEEecCce-eee
Confidence 43 23 4699999998 4433 33332 22222 3368999998 7766555 67999998764 222
Q ss_pred EEeecCCCCEEEEEEcCCCCeEEE
Q 018235 314 TSFKAHNADVNVISWNRCWLAVCW 337 (359)
Q Consensus 314 ~~~~~h~~~V~~i~~s~~~~~l~~ 337 (359)
-.-.-.-+.|...+|+|.+.+|++
T Consensus 340 d~Kslki~gIr~FswsP~~~llAY 363 (698)
T KOG2314|consen 340 DKKSLKISGIRDFSWSPTSNLLAY 363 (698)
T ss_pred cccccCCccccCcccCCCcceEEE
Confidence 111223456888999999887763
No 303
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.75 E-value=0.0013 Score=62.93 Aligned_cols=216 Identities=14% Similarity=0.087 Sum_probs=122.4
Q ss_pred CCceeeeChhHhhhhhcccccCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCC
Q 018235 46 EGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNK 125 (359)
Q Consensus 46 ~~~~l~~~~~~Y~~~~~~~~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~ 125 (359)
..+....|..-|.+.....-.|+.++-.|.|+.... .|+ +...+. .-.|+++.+.. .
T Consensus 172 ~~~l~~~D~dg~~~~~l~~~~~~~~~p~ws~~~~~~--------~y~---~f~~~~-~~~i~~~~l~~---g-------- 228 (425)
T COG0823 172 PYELALGDYDGYNQQKLTDSGSLILTPAWSPDGKKL--------AYV---SFELGG-CPRIYYLDLNT---G-------- 228 (425)
T ss_pred CceEEEEccCCcceeEecccCcceeccccCcCCCce--------EEE---EEecCC-CceEEEEeccC---C--------
Confidence 344555555577777778888999999999986211 222 222211 13566666620 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCcccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccc
Q 018235 126 PSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAES 205 (359)
Q Consensus 126 ~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~ 205 (359)
+.+++ ..+ .+.-..-+|+|+|..++.+...+|...||-+....
T Consensus 229 ---------------------------~~~~i-~~~---~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~------ 271 (425)
T COG0823 229 ---------------------------KRPVI-LNF---NGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDG------ 271 (425)
T ss_pred ---------------------------cccee-ecc---CCccCCccCCCCCCEEEEEECCCCCccEEEEcCCC------
Confidence 12222 223 33334458999998888888888887666554421
Q ss_pred cccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEec
Q 018235 206 ETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWS 285 (359)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~s 285 (359)
+....+..-.+.-..=.|+|+|..+..+.+..|.-.||-....+.-. +.+......-..-.|+
T Consensus 272 --------------~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~---~riT~~~~~~~~p~~S 334 (425)
T COG0823 272 --------------KNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV---TRLTFSGGGNSNPVWS 334 (425)
T ss_pred --------------CcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce---eEeeccCCCCcCccCC
Confidence 11222322222222668999999666777777765555443322222 1222222222267899
Q ss_pred CCCCCEEEEEeC-CCc--EEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeee
Q 018235 286 PTEPDVFASCSV-DGH--IAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEV 341 (359)
Q Consensus 286 p~~~~~las~s~-Dg~--I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~ 341 (359)
|+|. .|+..+. +|. |.+.|+.++.. .....+......-+|.+++..++.....
T Consensus 335 pdG~-~i~~~~~~~g~~~i~~~~~~~~~~--~~~lt~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 335 PDGD-KIVFESSSGGQWDIDKNDLASGGK--IRILTSTYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred CCCC-EEEEEeccCCceeeEEeccCCCCc--EEEccccccCCCCCcCCCCceEEEeccC
Confidence 9999 6666553 344 67777776522 2332333444456788888888776544
No 304
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.69 E-value=0.0016 Score=66.06 Aligned_cols=124 Identities=16% Similarity=0.168 Sum_probs=83.1
Q ss_pred CCCcEEecCCCCc-eEEEEeCCCC------CCeEEEEcCCCcEEEEecCCCCcceecCcc-ccCCCCCeEEEEecCCCCC
Q 018235 219 QSPLVKFGGHKDE-GYAIDWNPIT------TGRLVTGDCNSCIYLWEPASDATWNVDPNP-FIGHSASVEDLQWSPTEPD 290 (359)
Q Consensus 219 ~~~~~~~~~h~~~-v~~l~~sp~~------~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~-~~~h~~~V~~v~~sp~~~~ 290 (359)
++.+..+..|... +..+ .|+. ...-+.|-.+..++.||+|..+..++.... .........|++-+.+|
T Consensus 514 GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-- 589 (794)
T PF08553_consen 514 GKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-- 589 (794)
T ss_pred CcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc--
Confidence 5666677666642 4333 3321 124556667889999999985543321111 11234566777776666
Q ss_pred EEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEe
Q 018235 291 VFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILD 352 (359)
Q Consensus 291 ~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd 352 (359)
.||.||.+|.||||| +.+......+.+...+|..|..+.+|++|+.++. ..|.+++
T Consensus 590 ~iavgs~~G~IRLyd-~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-----tyLlLi~ 645 (794)
T PF08553_consen 590 YIAVGSNKGDIRLYD-RLGKRAKTALPGLGDPIIGIDVTADGKWILATCK-----TYLLLID 645 (794)
T ss_pred eEEEEeCCCcEEeec-ccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-----ceEEEEE
Confidence 699999999999999 4443444445788899999999999999999885 3455555
No 305
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.67 E-value=0.00029 Score=68.55 Aligned_cols=108 Identities=19% Similarity=0.318 Sum_probs=83.2
Q ss_pred ceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCc-----------ceecCccccCCCCCeEEEEecCCCCCEEEEEeCCC
Q 018235 231 EGYAIDWNPITTGRLVTGDCNSCIYLWEPASDAT-----------WNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG 299 (359)
Q Consensus 231 ~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~-----------~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg 299 (359)
...++.|+.... ++|.|+.||.+++-.+.+... -+.--+++.||..+|.-+.|+.+.+ -|-|...+|
T Consensus 16 kL~c~~WNke~g-yIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q-KLTtSDt~G 93 (1189)
T KOG2041|consen 16 KLHCAEWNKESG-YIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ-KLTTSDTSG 93 (1189)
T ss_pred eEEEEEEcccCC-eEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc-cccccCCCc
Confidence 577999998875 999999999999987754210 0111256889999999999999888 888999999
Q ss_pred cEEEEECCCCCCceEEe-ecCCCCEEEEEEcCCCCeEEEEee
Q 018235 300 HIAIWDTRVGKSALTSF-KAHNADVNVISWNRCWLAVCWHLE 340 (359)
Q Consensus 300 ~I~iwD~r~~~~~~~~~-~~h~~~V~~i~~s~~~~~l~~~~~ 340 (359)
.|.+|-+-.+.-+-.-+ ....+-|.+++|+.+|.-++....
T Consensus 94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYe 135 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYE 135 (1189)
T ss_pred eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEc
Confidence 99999988873222112 345667899999999998776654
No 306
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.67 E-value=0.0033 Score=59.12 Aligned_cols=158 Identities=18% Similarity=0.167 Sum_probs=95.4
Q ss_pred CCceeeEEEeCCC-CcEEEEE-----eCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 165 QGCVNRIRAMTQN-PHICASW-----ADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 165 ~~~V~~i~~~p~~-~~~lat~-----s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
...|....++|.+ ...||.+ +..+.++||.+.. ..++.+-.--......|.|+
T Consensus 173 ~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~---------------------~s~l~tk~lfk~~~~qLkW~ 231 (561)
T COG5354 173 PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPK---------------------NSVLVTKNLFKVSGVQLKWQ 231 (561)
T ss_pred ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccC---------------------CCeeeeeeeEeecccEEEEe
Confidence 4566777778764 2234553 5678899999875 23333222223345688999
Q ss_pred CCCCCeEEEEcC----------CCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEe--CCCcEEEEEC
Q 018235 239 PITTGRLVTGDC----------NSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS--VDGHIAIWDT 306 (359)
Q Consensus 239 p~~~~~l~sgs~----------dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s--~Dg~I~iwD~ 306 (359)
+.|..+|+-.-. ...++|++++. .... ....-.++|.+.+|.|.+. -|+.++ ....+.++|+
T Consensus 232 ~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e-~~i~----V~~~~~~pVhdf~W~p~S~-~F~vi~g~~pa~~s~~~l 305 (561)
T COG5354 232 VLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE-RSIP----VEKDLKDPVHDFTWEPLSS-RFAVISGYMPASVSVFDL 305 (561)
T ss_pred cCCceEEEEEEEeeecccceeccceEEEEeecc-cccc----eeccccccceeeeecccCC-ceeEEecccccceeeccc
Confidence 998843332211 24577888764 2221 1225678999999999988 666655 6888999999
Q ss_pred CCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 307 RVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 307 r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
|.. . .+..-.+.=|.+.|+|.+.+++...- +..-+.+-+|+..
T Consensus 306 r~N--l--~~~~Pe~~rNT~~fsp~~r~il~agF-~nl~gni~i~~~~ 348 (561)
T COG5354 306 RGN--L--RFYFPEQKRNTIFFSPHERYILFAGF-DNLQGNIEIFDPA 348 (561)
T ss_pred ccc--e--EEecCCcccccccccCcccEEEEecC-CccccceEEeccC
Confidence 974 2 22233444566778888777665321 1122345566543
No 307
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.65 E-value=0.0044 Score=58.96 Aligned_cols=129 Identities=13% Similarity=0.181 Sum_probs=82.3
Q ss_pred CCCcEEecCCCCceEEEEeCCCCCCeEEEEcC---CCcEEEEecCC-CCcceecCccccCCCCCeEEEEecCCCCCEEEE
Q 018235 219 QSPLVKFGGHKDEGYAIDWNPITTGRLVTGDC---NSCIYLWEPAS-DATWNVDPNPFIGHSASVEDLQWSPTEPDVFAS 294 (359)
Q Consensus 219 ~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~---dg~I~lwd~~~-~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las 294 (359)
.-|+-.+. -...+.+.+|-|.|. .+++-+. ..++.+|-+.+ ...+.. +..+ .+...+.|.|+|.|..+.+.
T Consensus 436 dIpve~ve-lke~vi~FaWEP~gd-kF~vi~g~~~k~tvsfY~~e~~~~~~~l-Vk~~--dk~~~N~vfwsPkG~fvvva 510 (698)
T KOG2314|consen 436 DIPVEVVE-LKESVIAFAWEPHGD-KFAVISGNTVKNTVSFYAVETNIKKPSL-VKEL--DKKFANTVFWSPKGRFVVVA 510 (698)
T ss_pred CCCceeee-cchheeeeeeccCCC-eEEEEEccccccceeEEEeecCCCchhh-hhhh--cccccceEEEcCCCcEEEEE
Confidence 45555443 356889999999998 6655432 35788898874 223221 1222 23567889999999944333
Q ss_pred --EeCCCcEEEEECCCCCCceE-EeecCCCCEEEEEEcCCCCeEEEEeeecc--cceEEEEEeCc
Q 018235 295 --CSVDGHIAIWDTRVGKSALT-SFKAHNADVNVISWNRCWLAVCWHLEVMM--EHFLFMILDCS 354 (359)
Q Consensus 295 --~s~Dg~I~iwD~r~~~~~~~-~~~~h~~~V~~i~~s~~~~~l~~~~~~~~--~d~~i~iwd~~ 354 (359)
+|..|.+.++|+.-. .... ....|- ..+-+.|.|.|+++++.....+ .++-.+||...
T Consensus 511 ~l~s~~g~l~F~D~~~a-~~k~~~~~eh~-~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 511 ALVSRRGDLEFYDTDYA-DLKDTASPEHF-AATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred EecccccceEEEecchh-hhhhccCcccc-ccccceECCCCCEEEEeeehhhhccccceEEEEee
Confidence 356889999998853 2211 123343 3677899999999988765542 25556777654
No 308
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.63 E-value=0.0012 Score=64.94 Aligned_cols=127 Identities=16% Similarity=0.181 Sum_probs=90.6
Q ss_pred eEEEEEecCCCceeeEEEeCCC-----------CcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEE
Q 018235 156 ILQLRKVAHQGCVNRIRAMTQN-----------PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVK 224 (359)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~-----------~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (359)
+++..+..|+..|+.|+|.|.. ..++|++...|.|.+||+.. ...+.-
T Consensus 46 q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~---------------------~s~~~~ 104 (1062)
T KOG1912|consen 46 QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVL---------------------ASVINW 104 (1062)
T ss_pred hhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehh---------------------hhhhhh
Confidence 3434555688999999998753 24788899999999999987 455566
Q ss_pred ecCCCCceEEEEeCCC---CCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcE
Q 018235 225 FGGHKDEGYAIDWNPI---TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHI 301 (359)
Q Consensus 225 ~~~h~~~v~~l~~sp~---~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I 301 (359)
+..|..++..++|-+. .+..|+.-....+|.+|+..+++.. ..+........|+.+.|.....|..-+..|.+
T Consensus 105 l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~----Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~v 180 (1062)
T KOG1912|consen 105 LSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKF----WKYDYSHEILSCFRVDPFDSRHFCVLGSKGFV 180 (1062)
T ss_pred hcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCcee----eccccCCcceeeeeeCCCCcceEEEEccCceE
Confidence 7778888888988543 3346777777889999999885432 23333445677788899766566655666666
Q ss_pred EEEECC
Q 018235 302 AIWDTR 307 (359)
Q Consensus 302 ~iwD~r 307 (359)
-+.+.-
T Consensus 181 l~~~~l 186 (1062)
T KOG1912|consen 181 LSCKDL 186 (1062)
T ss_pred EEEecc
Confidence 666543
No 309
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.61 E-value=2.4e-05 Score=75.07 Aligned_cols=161 Identities=18% Similarity=0.213 Sum_probs=104.0
Q ss_pred CceeeEEEeCCC-CcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCe
Q 018235 166 GCVNRIRAMTQN-PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGR 244 (359)
Q Consensus 166 ~~V~~i~~~p~~-~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~ 244 (359)
..+.|+++.-.. .-+++.|..+|.|.+-.++..- ...-....+|...+++++|++.....
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~h-------------------dSs~E~tp~~ar~Ct~lAwneLDtn~ 117 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPH-------------------DSSAEVTPGYARPCTSLAWNELDTNH 117 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcc-------------------cccceecccccccccccccccccHHH
Confidence 445555554433 2588999999999999887621 11123455778899999999987768
Q ss_pred EEEEc----CCCcEEEEecCCCCcceecCccccC-CCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecC
Q 018235 245 LVTGD----CNSCIYLWEPASDATWNVDPNPFIG-HSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAH 319 (359)
Q Consensus 245 l~sgs----~dg~I~lwd~~~~~~~~~~~~~~~~-h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h 319 (359)
||.|- .|..+.|||+.+.-........|.+ -....+.++|-.+.+ ++.+|...+.++++|+|........+ .
T Consensus 118 LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~k-lvlaGm~sr~~~ifdlRqs~~~~~sv--n 194 (783)
T KOG1008|consen 118 LAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTK-LVLAGMTSRSVHIFDLRQSLDSVSSV--N 194 (783)
T ss_pred HHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcc-hhhcccccchhhhhhhhhhhhhhhhh--h
Confidence 88873 4678999999863111000112222 345667899998888 99999999999999999641222222 1
Q ss_pred CCCEEEEEEcC-CCCeEEEEeeecccceEEEEEeC
Q 018235 320 NADVNVISWNR-CWLAVCWHLEVMMEHFLFMILDC 353 (359)
Q Consensus 320 ~~~V~~i~~s~-~~~~l~~~~~~~~~d~~i~iwd~ 353 (359)
+..+..+...| ...+++.. . ++.+.+||.
T Consensus 195 Tk~vqG~tVdp~~~nY~cs~-~----dg~iAiwD~ 224 (783)
T KOG1008|consen 195 TKYVQGITVDPFSPNYFCSN-S----DGDIAIWDT 224 (783)
T ss_pred hhhcccceecCCCCCceecc-c----cCceeeccc
Confidence 22344456666 34454433 2 667888883
No 310
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.00071 Score=61.76 Aligned_cols=83 Identities=7% Similarity=0.079 Sum_probs=71.1
Q ss_pred ecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCC
Q 018235 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPIT 241 (359)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~ 241 (359)
..|...|..++|+|....++..++.+..|.|.|+.+ ...+.++..| ..+++.+|..+.
T Consensus 190 p~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet---------------------~~~vssy~a~-~~~wSC~wDlde 247 (463)
T KOG1645|consen 190 PGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLET---------------------SCVVSSYIAY-NQIWSCCWDLDE 247 (463)
T ss_pred cccchhhhhhccCccccceeeeeccCceEEEEeccc---------------------ceeeeheecc-CCceeeeeccCC
Confidence 357788999999999856888899999999999998 4556667777 689999999998
Q ss_pred CCeEEEEcCCCcEEEEecCCCCcce
Q 018235 242 TGRLVTGDCNSCIYLWEPASDATWN 266 (359)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~ 266 (359)
..+|..|...|.|.+||++....+.
T Consensus 248 ~h~IYaGl~nG~VlvyD~R~~~~~~ 272 (463)
T KOG1645|consen 248 RHVIYAGLQNGMVLVYDMRQPEGPL 272 (463)
T ss_pred cceeEEeccCceEEEEEccCCCchH
Confidence 8899999999999999999865544
No 311
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.59 E-value=0.0083 Score=53.05 Aligned_cols=148 Identities=12% Similarity=0.094 Sum_probs=94.7
Q ss_pred CCCceeeEEEeCCCCcEEEEEeCC--------CcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEE
Q 018235 164 HQGCVNRIRAMTQNPHICASWADT--------GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAI 235 (359)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~d--------g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 235 (359)
.....|.+++.|+| ++.+|.... |.|..++... + +..+.......++|
T Consensus 84 ~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g~v~~~~~~~----------------------~-~~~~~~~~~~pNGi 139 (246)
T PF08450_consen 84 PFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPGSVYRIDPDG----------------------K-VTVVADGLGFPNGI 139 (246)
T ss_dssp CTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETTS----------------------E-EEEEEEEESSEEEE
T ss_pred ccCCCceEEEcCCC-CEEEEecCCCccccccccceEEECCCC----------------------e-EEEEecCcccccce
Confidence 34678999999999 677775543 4455555542 1 11122223356799
Q ss_pred EeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccc---cCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCc
Q 018235 236 DWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPF---IGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSA 312 (359)
Q Consensus 236 ~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~---~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~ 312 (359)
+|+|++..++++-+..+.|..+++...+..+...+.+ .......-.+++..++. ++++....+.|.++|.. + +.
T Consensus 140 ~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~-l~va~~~~~~I~~~~p~-G-~~ 216 (246)
T PF08450_consen 140 AFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN-LWVADWGGGRIVVFDPD-G-KL 216 (246)
T ss_dssp EEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETT-S-CE
T ss_pred EECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC-EEEEEcCCCEEEEECCC-c-cE
Confidence 9999998455677888899999987533311111222 22223467799999998 88888899999999988 4 56
Q ss_pred eEEeecCCCCEEEEEEc-CCCCeEEEE
Q 018235 313 LTSFKAHNADVNVISWN-RCWLAVCWH 338 (359)
Q Consensus 313 ~~~~~~h~~~V~~i~~s-~~~~~l~~~ 338 (359)
+..+......+++++|. ++...|...
T Consensus 217 ~~~i~~p~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 217 LREIELPVPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EEEEE-SSSSEEEEEEESTTSSEEEEE
T ss_pred EEEEcCCCCCEEEEEEECCCCCEEEEE
Confidence 66665444578999994 565555444
No 312
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.00038 Score=66.94 Aligned_cols=96 Identities=14% Similarity=0.156 Sum_probs=75.7
Q ss_pred CCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceE-EEEeCCCCC
Q 018235 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY-AIDWNPITT 242 (359)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~~sp~~~ 242 (359)
-...|-++.|+|.- .++|++..+|.|.+..+.. ..+.++..|..++. +++|.|+|.
T Consensus 19 l~~~i~~~ewnP~~-dLiA~~t~~gelli~R~n~----------------------qRlwtip~p~~~v~~sL~W~~DGk 75 (665)
T KOG4640|consen 19 LPINIKRIEWNPKM-DLIATRTEKGELLIHRLNW----------------------QRLWTIPIPGENVTASLCWRPDGK 75 (665)
T ss_pred cccceEEEEEcCcc-chhheeccCCcEEEEEecc----------------------ceeEeccCCCCccceeeeecCCCC
Confidence 35678889999988 7999999999999998875 44677776777777 999999998
Q ss_pred CeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecC
Q 018235 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSP 286 (359)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp 286 (359)
.||.|-.||+|++.|+.+++... .........|.++-|+|
T Consensus 76 -llaVg~kdG~I~L~Dve~~~~l~---~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 76 -LLAVGFKDGTIRLHDVEKGGRLV---SFLFSVETDISKGIWDR 115 (665)
T ss_pred -EEEEEecCCeEEEEEccCCCcee---ccccccccchheeeccc
Confidence 99999999999999998854432 11222456777788864
No 313
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.00051 Score=66.11 Aligned_cols=94 Identities=22% Similarity=0.314 Sum_probs=72.6
Q ss_pred CCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeE-EEEecCCCCCEEEEEeCCCcEEEEECC
Q 018235 229 KDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVE-DLQWSPTEPDVFASCSVDGHIAIWDTR 307 (359)
Q Consensus 229 ~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~-~v~~sp~~~~~las~s~Dg~I~iwD~r 307 (359)
...+.-+.|+|.-. ++|.+.++|.|-+..++...- .++.-|...|+ +++|.|+|+ +||.|-.||+|+|.|+.
T Consensus 20 ~~~i~~~ewnP~~d-LiA~~t~~gelli~R~n~qRl-----wtip~p~~~v~~sL~W~~DGk-llaVg~kdG~I~L~Dve 92 (665)
T KOG4640|consen 20 PINIKRIEWNPKMD-LIATRTEKGELLIHRLNWQRL-----WTIPIPGENVTASLCWRPDGK-LLAVGFKDGTIRLHDVE 92 (665)
T ss_pred ccceEEEEEcCccc-hhheeccCCcEEEEEecccee-----EeccCCCCccceeeeecCCCC-EEEEEecCCeEEEEEcc
Confidence 34688999999998 999999999998887764222 23443455555 999999999 99999999999999999
Q ss_pred CCCCceEEe-ecCCCCEEEEEEcC
Q 018235 308 VGKSALTSF-KAHNADVNVISWNR 330 (359)
Q Consensus 308 ~~~~~~~~~-~~h~~~V~~i~~s~ 330 (359)
++ ..+... ..-..+|.++-|.+
T Consensus 93 ~~-~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 93 KG-GRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred CC-Cceeccccccccchheeeccc
Confidence 98 444442 33456788888874
No 314
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.49 E-value=0.00027 Score=41.49 Aligned_cols=38 Identities=21% Similarity=0.405 Sum_probs=33.5
Q ss_pred CCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEe
Q 018235 220 SPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWE 258 (359)
Q Consensus 220 ~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd 258 (359)
.+...+..|...+.++.|++.+. ++++|+.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGK-YLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCC-EEEEecCCCeEEEcC
Confidence 45667778899999999999886 999999999999996
No 315
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.48 E-value=0.019 Score=59.59 Aligned_cols=181 Identities=12% Similarity=0.179 Sum_probs=99.2
Q ss_pred CCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCc---ccc----cccccccc-----------CCCCCCCCCCCcEEec
Q 018235 165 QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHL---NAL----AESETIVG-----------QGAPQVSNQSPLVKFG 226 (359)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~---~~~----~~~~~~~~-----------~~~~~~~~~~~~~~~~ 226 (359)
.+.|.++.|+|++ .++|-.+..+++.+-.....+ +.+ ...+..+. +..++.....+....+
T Consensus 109 d~GI~aaswS~De-e~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek 187 (1265)
T KOG1920|consen 109 DNGISAASWSPDE-ELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEK 187 (1265)
T ss_pred cCceEEEeecCCC-cEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccc
Confidence 5789999999999 777777777888766542210 111 00000000 0000000001110000
Q ss_pred ------CCCCceEEEEeCCCCCCeEEE-----EcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEE
Q 018235 227 ------GHKDEGYAIDWNPITTGRLVT-----GDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASC 295 (359)
Q Consensus 227 ------~h~~~v~~l~~sp~~~~~l~s-----gs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~ 295 (359)
-|. .=..+.|--+|. ++|+ ...-..|++||-. +.......+ ...--.+++|-|.|. ++|+-
T Consensus 188 ~~~~~~~~~-~~~~IsWRgDg~-~fAVs~~~~~~~~RkirV~drE--g~Lns~se~---~~~l~~~LsWkPsgs-~iA~i 259 (1265)
T KOG1920|consen 188 ALEQIEQDD-HKTSISWRGDGE-YFAVSFVESETGTRKIRVYDRE--GALNSTSEP---VEGLQHSLSWKPSGS-LIAAI 259 (1265)
T ss_pred cccchhhcc-CCceEEEccCCc-EEEEEEEeccCCceeEEEeccc--chhhcccCc---ccccccceeecCCCC-eEeee
Confidence 111 123699999998 7777 3323789999965 222100011 112234689999998 88875
Q ss_pred e---CCCcEEEEECCCCCCc--eEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 296 S---VDGHIAIWDTRVGKSA--LTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 296 s---~Dg~I~iwD~r~~~~~--~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
. .|+.|.++.-.....- ...+......|..++||.++.+|+..... .+...|++|-...
T Consensus 260 q~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~-~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 260 QCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSN-LENSLVQLWTTGN 323 (1265)
T ss_pred eecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecc-cccceEEEEEecC
Confidence 3 4667888875432111 11223334448999999999998874432 2245588886543
No 316
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.00094 Score=61.84 Aligned_cols=170 Identities=12% Similarity=0.088 Sum_probs=112.6
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeC-CCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEe
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWAD-TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~-dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (359)
..+..|.+.|..++.+-++ .+++|.+. |..++++|+.... .+..++----+. .+.|
T Consensus 47 KhFraHL~~I~sl~~S~dg-~L~~Sv~d~Dhs~KvfDvEn~D---------------------minmiKL~~lPg-~a~w 103 (558)
T KOG0882|consen 47 KHFRAHLGVILSLAVSYDG-WLFRSVEDPDHSVKVFDVENFD---------------------MINMIKLVDLPG-FAEW 103 (558)
T ss_pred hhhHHHHHHHHhhhccccc-eeEeeccCcccceeEEEeeccc---------------------hhhhcccccCCC-ceEE
Confidence 4555788999999999988 88999887 9999999987621 110011001111 2222
Q ss_pred C-CCC-C-C-eEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCC-CCc
Q 018235 238 N-PIT-T-G-RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG-KSA 312 (359)
Q Consensus 238 s-p~~-~-~-~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~-~~~ 312 (359)
. ..| . . +-++.-.+|.|.++|-....+.. ...-.-|.++|..+.++|.+. .+.|....|.|.-|..... +.+
T Consensus 104 v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~--~~fkklH~sPV~~i~y~qa~D-s~vSiD~~gmVEyWs~e~~~qfP 180 (558)
T KOG0882|consen 104 VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQD--GYFKKLHFSPVKKIRYNQAGD-SAVSIDISGMVEYWSAEGPFQFP 180 (558)
T ss_pred ecCCCCeeeeEEeecccCCCcEEECCcCCcCcc--ceecccccCceEEEEeecccc-ceeeccccceeEeecCCCcccCc
Confidence 1 111 0 0 33344557899999987644332 122234999999999999998 8888888999999987731 111
Q ss_pred -------------eEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 313 -------------LTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 313 -------------~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
+..+....+...++.|+|++..+..-.. +..|+++...+|.+
T Consensus 181 r~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~----DrkVR~F~~KtGkl 235 (558)
T KOG0882|consen 181 RTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNP----DRKVRGFVFKTGKL 235 (558)
T ss_pred cccccccccccchhhcccccccCccceEEccccCcccccCc----ccEEEEEEeccchh
Confidence 1112233456788999999988765443 88899999998875
No 317
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.29 E-value=0.046 Score=48.29 Aligned_cols=150 Identities=13% Similarity=0.036 Sum_probs=90.8
Q ss_pred eEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC-CCCCCeEEEE
Q 018235 170 RIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN-PITTGRLVTG 248 (359)
Q Consensus 170 ~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s-p~~~~~l~sg 248 (359)
++.|.+....++++-...+.|+.|+.... ....+.... ..++.+. +++ .|+.+
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~----------------------~~~~~~~~~--~~G~~~~~~~g--~l~v~ 57 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTG----------------------EVEVIDLPG--PNGMAFDRPDG--RLYVA 57 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTT----------------------EEEEEESSS--EEEEEEECTTS--EEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCC----------------------eEEEEecCC--CceEEEEccCC--EEEEE
Confidence 56788844488888888999999998772 122222222 5677777 553 56666
Q ss_pred cCCCcEEEEecCCCCcceecCccc-cC-CCCCeEEEEecCCCCCEEEEEeCC--------CcEEEEECCCCCCceEEeec
Q 018235 249 DCNSCIYLWEPASDATWNVDPNPF-IG-HSASVEDLQWSPTEPDVFASCSVD--------GHIAIWDTRVGKSALTSFKA 318 (359)
Q Consensus 249 s~dg~I~lwd~~~~~~~~~~~~~~-~~-h~~~V~~v~~sp~~~~~las~s~D--------g~I~iwD~r~~~~~~~~~~~ 318 (359)
... .+.++|+.+ ++........ .. .....+++++.|+|. ++++.... |.|..++.. + + +..+..
T Consensus 58 ~~~-~~~~~d~~~-g~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~-~-~~~~~~ 131 (246)
T PF08450_consen 58 DSG-GIAVVDPDT-GKVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-G-K-VTVVAD 131 (246)
T ss_dssp ETT-CEEEEETTT-TEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-S-E-EEEEEE
T ss_pred EcC-ceEEEecCC-CcEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-C-e-EEEEec
Confidence 644 456668876 4332111111 12 346789999999998 88877644 456667766 3 3 233333
Q ss_pred CCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 319 HNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 319 h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
.-...|.|+|+|+++.|.+.... .+.|..++..
T Consensus 132 ~~~~pNGi~~s~dg~~lyv~ds~---~~~i~~~~~~ 164 (246)
T PF08450_consen 132 GLGFPNGIAFSPDGKTLYVADSF---NGRIWRFDLD 164 (246)
T ss_dssp EESSEEEEEEETTSSEEEEEETT---TTEEEEEEEE
T ss_pred CcccccceEECCcchheeecccc---cceeEEEecc
Confidence 34557999999999977655432 3445555543
No 318
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.25 E-value=0.17 Score=47.12 Aligned_cols=114 Identities=8% Similarity=0.044 Sum_probs=72.1
Q ss_pred CC-CCCCeEEEEcCCCcEEEEecCCCCcce-ecCcc--c-----cCCCCCeEEEEecCCCCCEEEEEe---------CCC
Q 018235 238 NP-ITTGRLVTGDCNSCIYLWEPASDATWN-VDPNP--F-----IGHSASVEDLQWSPTEPDVFASCS---------VDG 299 (359)
Q Consensus 238 sp-~~~~~l~sgs~dg~I~lwd~~~~~~~~-~~~~~--~-----~~h~~~V~~v~~sp~~~~~las~s---------~Dg 299 (359)
.+ ++. ++..... |+|.+-|+....... ..... + ......+.-++++|++..+++... ..+
T Consensus 202 ~~~dg~-~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~ 279 (352)
T TIGR02658 202 SNKSGR-LVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASR 279 (352)
T ss_pred EcCCCc-EEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCC
Confidence 44 665 5544443 999999964321100 00011 1 113445556999999986666442 225
Q ss_pred cEEEEECCCCCCceEEeecCCCCEEEEEEcCCCC-eEEEEeeecccceEEEEEeCcCCcc
Q 018235 300 HIAIWDTRVGKSALTSFKAHNADVNVISWNRCWL-AVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 300 ~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~-~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
.|.++|+.+. +.+..+.. ...+..|+++|+++ .|..... ..+.|.+.|..++++
T Consensus 280 ~V~ViD~~t~-kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~---~s~~VsViD~~t~k~ 334 (352)
T TIGR02658 280 FLFVVDAKTG-KRLRKIEL-GHEIDSINVSQDAKPLLYALST---GDKTLYIFDAETGKE 334 (352)
T ss_pred EEEEEECCCC-eEEEEEeC-CCceeeEEECCCCCeEEEEeCC---CCCcEEEEECcCCeE
Confidence 7999999987 66666643 45789999999999 5554443 266799999988754
No 319
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.25 E-value=0.032 Score=51.45 Aligned_cols=121 Identities=11% Similarity=0.070 Sum_probs=74.6
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
.......|+|+++... .+ .++++. .+.|++|++.... . ..+...+..+. .+.++...
T Consensus 82 i~~~~~~g~V~ai~~~-~~-~lv~~~--g~~l~v~~l~~~~-~-----------------l~~~~~~~~~~-~i~sl~~~ 138 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NG-RLVVAV--GNKLYVYDLDNSK-T-----------------LLKKAFYDSPF-YITSLSVF 138 (321)
T ss_dssp EEEEEESS-EEEEEEE-TT-EEEEEE--TTEEEEEEEETTS-S-----------------EEEEEEE-BSS-SEEEEEEE
T ss_pred EEEEeecCcceEhhhh-CC-EEEEee--cCEEEEEEccCcc-c-----------------chhhheecceE-EEEEEecc
Confidence 4455678999999988 34 455544 3899999998721 0 11222222222 55555554
Q ss_pred CCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECC
Q 018235 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTR 307 (359)
Q Consensus 239 p~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r 307 (359)
+. +++.|+.-..+.++..+........ ..-......+.++.|-+++. .++.+..+|.|.++...
T Consensus 139 --~~-~I~vgD~~~sv~~~~~~~~~~~l~~-va~d~~~~~v~~~~~l~d~~-~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 139 --KN-YILVGDAMKSVSLLRYDEENNKLIL-VARDYQPRWVTAAEFLVDED-TIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp --TT-EEEEEESSSSEEEEEEETTTE-EEE-EEEESS-BEEEEEEEE-SSS-EEEEEETTSEEEEEEE-
T ss_pred --cc-EEEEEEcccCEEEEEEEccCCEEEE-EEecCCCccEEEEEEecCCc-EEEEEcCCCeEEEEEEC
Confidence 44 8999999899988865542221210 11122345688899987775 89999999999999776
No 320
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.24 E-value=0.029 Score=56.32 Aligned_cols=158 Identities=10% Similarity=0.104 Sum_probs=97.2
Q ss_pred EEEecCCCc-eeeEEEeCCCCcEEEEEeCCC-----cEEEEECCCCccccccccccccCCCCCCCCCCCc---EEe--cC
Q 018235 159 LRKVAHQGC-VNRIRAMTQNPHICASWADTG-----HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPL---VKF--GG 227 (359)
Q Consensus 159 ~~~~~H~~~-V~~i~~~p~~~~~lat~s~dg-----~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~ 227 (359)
.-+.+|... |.-+....+. +++++.++|+ .|+||++....... +...+ ..+ ..
T Consensus 58 ~~fqa~~~siv~~L~~~~~~-~~L~sv~Ed~~~np~llkiw~lek~~~n~---------------sP~c~~~~ri~~~~n 121 (933)
T KOG2114|consen 58 RGFQAYEQSIVQFLYILNKQ-NFLFSVGEDEQGNPVLLKIWDLEKVDKNN---------------SPQCLYEHRIFTIKN 121 (933)
T ss_pred ehheecchhhhhHhhcccCc-eEEEEEeecCCCCceEEEEecccccCCCC---------------CcceeeeeeeeccCC
Confidence 444455555 4444433333 6777766665 48999998731110 01111 111 11
Q ss_pred --CCCceEEEEeCCCCCCeEEEEcCCCcEEEEecC--C-CCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEE
Q 018235 228 --HKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPA--S-DATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIA 302 (359)
Q Consensus 228 --h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~--~-~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~ 302 (359)
...++.+|+.|.+-. .+|.|-.+|.|.++.-. . .+.. ..-...-..+|+.+.+.-++..+ +-+..-..|.
T Consensus 122 p~~~~p~s~l~Vs~~l~-~Iv~Gf~nG~V~~~~GDi~RDrgsr---~~~~~~~~~pITgL~~~~d~~s~-lFv~Tt~~V~ 196 (933)
T KOG2114|consen 122 PTNPSPASSLAVSEDLK-TIVCGFTNGLVICYKGDILRDRGSR---QDYSHRGKEPITGLALRSDGKSV-LFVATTEQVM 196 (933)
T ss_pred CCCCCcceEEEEEcccc-EEEEEecCcEEEEEcCcchhccccc---eeeeccCCCCceeeEEecCCcee-EEEEecceeE
Confidence 234678888888876 89999999999887422 1 1111 11222345799999999888853 2333445789
Q ss_pred EEECCCCCCceE-EeecCCCCEEEEEEcCCCC-eEEEE
Q 018235 303 IWDTRVGKSALT-SFKAHNADVNVISWNRCWL-AVCWH 338 (359)
Q Consensus 303 iwD~r~~~~~~~-~~~~h~~~V~~i~~s~~~~-~l~~~ 338 (359)
+|.+... .+.. .+..|+.+++|.++++... +++.+
T Consensus 197 ~y~l~gr-~p~~~~ld~~G~~lnCss~~~~t~qfIca~ 233 (933)
T KOG2114|consen 197 LYSLSGR-TPSLKVLDNNGISLNCSSFSDGTYQFICAG 233 (933)
T ss_pred EEEecCC-CcceeeeccCCccceeeecCCCCccEEEec
Confidence 9998854 3444 4688999999999998766 44443
No 321
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.22 E-value=0.006 Score=57.90 Aligned_cols=116 Identities=12% Similarity=0.130 Sum_probs=77.2
Q ss_pred CCCcEEecCCCCceEEEEeCCCCCC------eEEEEcCCCcEEEEecCCCCcceecCccccCC----CCCeEEEEecCCC
Q 018235 219 QSPLVKFGGHKDEGYAIDWNPITTG------RLVTGDCNSCIYLWEPASDATWNVDPNPFIGH----SASVEDLQWSPTE 288 (359)
Q Consensus 219 ~~~~~~~~~h~~~v~~l~~sp~~~~------~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h----~~~V~~v~~sp~~ 288 (359)
++.+..+..|.. |.-+++.|+..+ .-+.|=.+..|+-||+|..+.-.. ..-.+| .....|.+- ++
T Consensus 366 GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl--~~~q~kqy~~k~nFsc~aT--T~ 440 (644)
T KOG2395|consen 366 GKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKL--AVVQSKQYSTKNNFSCFAT--TE 440 (644)
T ss_pred ceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCccee--eeeeccccccccccceeee--cC
Confidence 566666666665 666677776543 123355588899999997554111 111222 223344443 34
Q ss_pred CCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEee
Q 018235 289 PDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLE 340 (359)
Q Consensus 289 ~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~ 340 (359)
.-.+|.||.+|-|||||- .+......+.+...+|..|.-+.+|++|+.++.
T Consensus 441 sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~ 491 (644)
T KOG2395|consen 441 SGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCK 491 (644)
T ss_pred CceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecc
Confidence 448999999999999997 442444456888999999999999999998875
No 322
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.19 E-value=0.004 Score=60.85 Aligned_cols=140 Identities=11% Similarity=0.146 Sum_probs=93.4
Q ss_pred ceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEE
Q 018235 167 CVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLV 246 (359)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~ 246 (359)
.|.--++...+ .+++.|+..|.|++|+-... ........+-...+..+..|+... ++|
T Consensus 35 ~v~lTc~dst~-~~l~~GsS~G~lyl~~R~~~--------------------~~~~~~~~~~~~~~~~~~vs~~e~-lvA 92 (726)
T KOG3621|consen 35 RVKLTCVDATE-EYLAMGSSAGSVYLYNRHTG--------------------EMRKLKNEGATGITCVRSVSSVEY-LVA 92 (726)
T ss_pred eEEEEEeecCC-ceEEEecccceEEEEecCch--------------------hhhcccccCccceEEEEEecchhH-hhh
Confidence 33333444445 78999999999999987662 111222333344566778888887 899
Q ss_pred EEcCCCcEEEEecCCCCcce-ecCcccc-CCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCC---CCceEEeecCCC
Q 018235 247 TGDCNSCIYLWEPASDATWN-VDPNPFI-GHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG---KSALTSFKAHNA 321 (359)
Q Consensus 247 sgs~dg~I~lwd~~~~~~~~-~~~~~~~-~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~---~~~~~~~~~h~~ 321 (359)
.|+..|.|.++.++.....- .-..++. .|+..|++++|++++. -+.+|...|.|.+--+... ....+.+..-.+
T Consensus 93 agt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~-k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds 171 (726)
T KOG3621|consen 93 AGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM-KLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDS 171 (726)
T ss_pred hhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc-EEeecCCCceEEEEEechhhhhccccceeeccCc
Confidence 99999999999887632211 0012222 3788999999999999 9999999999998877662 112333444455
Q ss_pred CEEEEEEc
Q 018235 322 DVNVISWN 329 (359)
Q Consensus 322 ~V~~i~~s 329 (359)
.|-.|...
T Consensus 172 ~IVQlD~~ 179 (726)
T KOG3621|consen 172 EIVQLDYL 179 (726)
T ss_pred ceEEeecc
Confidence 66666544
No 323
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.18 E-value=0.0034 Score=63.03 Aligned_cols=126 Identities=17% Similarity=0.218 Sum_probs=88.2
Q ss_pred eEEEEEecCCCceeeEEEeCCCCcEEEEEeCC---------CcEEEEECCCCccccccccccccCCCCCCCCCCCcEEec
Q 018235 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWADT---------GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG 226 (359)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~d---------g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (359)
..++++..|.+.|..+.. +| ++++|++.. .-|+|||++... ...|+..
T Consensus 208 ~~iht~~aHs~siSDfDv--~G-NlLitCG~S~R~~~l~~D~FvkVYDLRmmr------------------al~PI~~-- 264 (1118)
T KOG1275|consen 208 ETIHTFDAHSGSISDFDV--QG-NLLITCGYSMRRYNLAMDPFVKVYDLRMMR------------------ALSPIQF-- 264 (1118)
T ss_pred ceeeeeeccccceeeeec--cC-CeEEEeecccccccccccchhhhhhhhhhh------------------ccCCccc--
Confidence 445788899999987655 56 677777654 456889988621 1233322
Q ss_pred CCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEEC
Q 018235 227 GHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDT 306 (359)
Q Consensus 227 ~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~ 306 (359)
+.++ .-+.|+|.-..+++.+++.|...+-|..+-+.+.....-+....+.+...++|+++. .+|.+..+|.|.+|--
T Consensus 265 -~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~-alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 265 -PYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGD-ALAFGDHEGHVNLWAD 341 (1118)
T ss_pred -ccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCc-eEEEecccCcEeeecC
Confidence 2222 357888887779999999999999996543443322222333445689999999999 9999999999999974
Q ss_pred C
Q 018235 307 R 307 (359)
Q Consensus 307 r 307 (359)
+
T Consensus 342 ~ 342 (1118)
T KOG1275|consen 342 R 342 (1118)
T ss_pred C
Confidence 4
No 324
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.18 E-value=0.0015 Score=38.06 Aligned_cols=35 Identities=26% Similarity=0.426 Sum_probs=30.9
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEE
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWD 194 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd 194 (359)
..+..|...|+++.|.+.+ .++++++.+|.|++|+
T Consensus 6 ~~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 6 KTLKGHTGPVTSVAFSPDG-KYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEecCCceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence 4555899999999999988 7899999999999996
No 325
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.14 E-value=0.001 Score=66.11 Aligned_cols=106 Identities=13% Similarity=0.183 Sum_probs=77.7
Q ss_pred EEEeCCCCCCeEEEEcC----CCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCC
Q 018235 234 AIDWNPITTGRLVTGDC----NSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG 309 (359)
Q Consensus 234 ~l~~sp~~~~~l~sgs~----dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~ 309 (359)
-.+|+|..+ +|+.++- .|+|-||-- + +.+-.. .++. -.+.++||||..- +||.|-.-|.+.+|...+.
T Consensus 20 i~SWHPseP-lfAVA~fS~er~GSVtIfad-t-GEPqr~-Vt~P---~hatSLCWHpe~~-vLa~gwe~g~~~v~~~~~~ 91 (1416)
T KOG3617|consen 20 ISSWHPSEP-LFAVASFSPERGGSVTIFAD-T-GEPQRD-VTYP---VHATSLCWHPEEF-VLAQGWEMGVSDVQKTNTT 91 (1416)
T ss_pred ccccCCCCc-eeEEEEecCCCCceEEEEec-C-CCCCcc-cccc---eehhhhccChHHH-HHhhccccceeEEEecCCc
Confidence 357888888 7777653 477877742 3 332211 1122 2345699999987 9999999999999998874
Q ss_pred CCceEEe-ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeC
Q 018235 310 KSALTSF-KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDC 353 (359)
Q Consensus 310 ~~~~~~~-~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~ 353 (359)
...++ ..|..+|..+.|+++|..++...+ .+.+.+|..
T Consensus 92 --e~htv~~th~a~i~~l~wS~~G~~l~t~d~----~g~v~lwr~ 130 (1416)
T KOG3617|consen 92 --ETHTVVETHPAPIQGLDWSHDGTVLMTLDN----PGSVHLWRY 130 (1416)
T ss_pred --eeeeeccCCCCCceeEEecCCCCeEEEcCC----CceeEEEEe
Confidence 33444 679999999999999999988766 778888864
No 326
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.08 E-value=0.0023 Score=63.71 Aligned_cols=71 Identities=17% Similarity=0.169 Sum_probs=60.1
Q ss_pred ceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEE
Q 018235 167 CVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLV 246 (359)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~ 246 (359)
.+++++|+|.. .++|.|=..|.+.+|.... .+.-.....|..++..|+||++|. .|+
T Consensus 61 hatSLCWHpe~-~vLa~gwe~g~~~v~~~~~---------------------~e~htv~~th~a~i~~l~wS~~G~-~l~ 117 (1416)
T KOG3617|consen 61 HATSLCWHPEE-FVLAQGWEMGVSDVQKTNT---------------------TETHTVVETHPAPIQGLDWSHDGT-VLM 117 (1416)
T ss_pred ehhhhccChHH-HHHhhccccceeEEEecCC---------------------ceeeeeccCCCCCceeEEecCCCC-eEE
Confidence 34569999988 8899999999999999876 233344567999999999999998 999
Q ss_pred EEcCCCcEEEEecC
Q 018235 247 TGDCNSCIYLWEPA 260 (359)
Q Consensus 247 sgs~dg~I~lwd~~ 260 (359)
|++.-|.+++|...
T Consensus 118 t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 118 TLDNPGSVHLWRYD 131 (1416)
T ss_pred EcCCCceeEEEEee
Confidence 99999999999775
No 327
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.03 E-value=0.084 Score=47.69 Aligned_cols=164 Identities=14% Similarity=0.092 Sum_probs=102.1
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEE----EeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEE
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICAS----WADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYA 234 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat----~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 234 (359)
..+.+|- .|+++|..+++| .+..|.|-|||.... -..+..|..|.-.-+.
T Consensus 50 RHFyGHg------~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~--------------------~~ri~E~~s~GIGPHe 103 (305)
T PF07433_consen 50 RHFYGHG------VFSPDGRLLYTTENDYETGRGVIGVYDAARG--------------------YRRIGEFPSHGIGPHE 103 (305)
T ss_pred CEEecCE------EEcCCCCEEEEeccccCCCcEEEEEEECcCC--------------------cEEEeEecCCCcChhh
Confidence 4556664 899999655555 344689999999851 3455667777666677
Q ss_pred EEeCCCCCCeEEEEc------------------CCCcEEEEecCCCCcceecCccc--cCCCCCeEEEEecCCCCCEEEE
Q 018235 235 IDWNPITTGRLVTGD------------------CNSCIYLWEPASDATWNVDPNPF--IGHSASVEDLQWSPTEPDVFAS 294 (359)
Q Consensus 235 l~~sp~~~~~l~sgs------------------~dg~I~lwd~~~~~~~~~~~~~~--~~h~~~V~~v~~sp~~~~~las 294 (359)
|.|.|+++ .|+.+- .+-++.+-|..+ +..+ ....+ .-|..++.-+++.+++. +++.
T Consensus 104 l~l~pDG~-tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~s-G~ll-~q~~Lp~~~~~lSiRHLa~~~~G~-V~~a 179 (305)
T PF07433_consen 104 LLLMPDGE-TLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARS-GALL-EQVELPPDLHQLSIRHLAVDGDGT-VAFA 179 (305)
T ss_pred EEEcCCCC-EEEEEcCCCccCcccCceecChhhcCCceEEEecCC-Ccee-eeeecCccccccceeeEEecCCCc-EEEE
Confidence 88899886 555542 122233333333 3322 12234 34778899999999987 5554
Q ss_pred EeCCC-------cEEEEECCCCCCceEEe-------ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 295 CSVDG-------HIAIWDTRVGKSALTSF-------KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 295 ~s~Dg-------~I~iwD~r~~~~~~~~~-------~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
+-..| .|.+++... .+..+ .....-+-+|++++++.+++.++-. .+++.+||..+|.+
T Consensus 180 ~Q~qg~~~~~~PLva~~~~g~---~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPr---Gg~~~~~d~~tg~~ 251 (305)
T PF07433_consen 180 MQYQGDPGDAPPLVALHRRGG---ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPR---GGRVAVWDAATGRL 251 (305)
T ss_pred EecCCCCCccCCeEEEEcCCC---cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCC---CCEEEEEECCCCCE
Confidence 43222 133333222 12222 2234568899999999988777653 78899999998874
No 328
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.0046 Score=57.41 Aligned_cols=165 Identities=11% Similarity=-0.003 Sum_probs=110.6
Q ss_pred ecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCC
Q 018235 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPIT 241 (359)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~ 241 (359)
.-|...|+.+..... .++.+++.||.++.|--..-. -...+..|..|...+.+|+-+.++
T Consensus 6 ymhrd~i~hv~~tka--~fiiqASlDGh~KFWkKs~is------------------GvEfVKhFraHL~~I~sl~~S~dg 65 (558)
T KOG0882|consen 6 YMHRDVITHVFPTKA--KFIIQASLDGHKKFWKKSRIS------------------GVEFVKHFRAHLGVILSLAVSYDG 65 (558)
T ss_pred hcccceeeeEeeehh--heEEeeecchhhhhcCCCCcc------------------ceeehhhhHHHHHHHHhhhccccc
Confidence 347777776665543 599999999999999754310 123455677888899999999999
Q ss_pred CCeEEEEcC-CCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCC--CEEEEEeCCCcEEEEECCCCCCc-eEEee
Q 018235 242 TGRLVTGDC-NSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEP--DVFASCSVDGHIAIWDTRVGKSA-LTSFK 317 (359)
Q Consensus 242 ~~~l~sgs~-dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~--~~las~s~Dg~I~iwD~r~~~~~-~~~~~ 317 (359)
. ++.|++. |..++++|+.+..-... ..+.--...++.+ .+|... .+-++.-.++.|.|+|-+....+ ...-.
T Consensus 66 ~-L~~Sv~d~Dhs~KvfDvEn~Dminm--iKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkk 141 (558)
T KOG0882|consen 66 W-LFRSVEDPDHSVKVFDVENFDMINM--IKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKK 141 (558)
T ss_pred e-eEeeccCcccceeEEEeeccchhhh--cccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecc
Confidence 8 8899777 99999999876322210 1111122233222 233321 13333446899999999986323 33447
Q ss_pred cCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 318 AHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 318 ~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
-|.++|.++.+++.+..++.... .+.|..|.+.
T Consensus 142 lH~sPV~~i~y~qa~Ds~vSiD~----~gmVEyWs~e 174 (558)
T KOG0882|consen 142 LHFSPVKKIRYNQAGDSAVSIDI----SGMVEYWSAE 174 (558)
T ss_pred cccCceEEEEeeccccceeeccc----cceeEeecCC
Confidence 89999999999999887776644 5678888765
No 329
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.87 E-value=0.22 Score=50.28 Aligned_cols=158 Identities=9% Similarity=0.020 Sum_probs=99.5
Q ss_pred CeEE--EEEecC-----CCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecC
Q 018235 155 PILQ--LRKVAH-----QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGG 227 (359)
Q Consensus 155 ~~~~--~~~~~H-----~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (359)
|.+. ++..+| +.++..++++.+- ..+|.|..+|.|..+.-+-... .+........
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l-~~Iv~Gf~nG~V~~~~GDi~RD-----------------rgsr~~~~~~ 169 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDL-KTIVCGFTNGLVICYKGDILRD-----------------RGSRQDYSHR 169 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccc-cEEEEEecCcEEEEEcCcchhc-----------------cccceeeecc
Confidence 5554 455554 3567888888876 7899999999999885432100 1111122222
Q ss_pred CCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECC
Q 018235 228 HKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTR 307 (359)
Q Consensus 228 h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r 307 (359)
-..+|++|.+..++...+..+ .-..|.+|.+.. ..+. ...+..|..+++|..+++....+++ |+ ...|.+||..
T Consensus 170 ~~~pITgL~~~~d~~s~lFv~-Tt~~V~~y~l~g-r~p~--~~~ld~~G~~lnCss~~~~t~qfIc-a~-~e~l~fY~sd 243 (933)
T KOG2114|consen 170 GKEPITGLALRSDGKSVLFVA-TTEQVMLYSLSG-RTPS--LKVLDNNGISLNCSSFSDGTYQFIC-AG-SEFLYFYDSD 243 (933)
T ss_pred CCCCceeeEEecCCceeEEEE-ecceeEEEEecC-CCcc--eeeeccCCccceeeecCCCCccEEE-ec-CceEEEEcCC
Confidence 345899999998888433333 356799999874 3333 2457778899999999987663443 33 3569999988
Q ss_pred CCCCceEEee-cCCCCEEEEEEcCCCCeEEEEee
Q 018235 308 VGKSALTSFK-AHNADVNVISWNRCWLAVCWHLE 340 (359)
Q Consensus 308 ~~~~~~~~~~-~h~~~V~~i~~s~~~~~l~~~~~ 340 (359)
.. ++...+. +|.-.+ -|...|.+++....
T Consensus 244 ~~-~~cfaf~~g~kk~~---~~~~~g~~L~v~~~ 273 (933)
T KOG2114|consen 244 GR-GPCFAFEVGEKKEM---LVFSFGLLLCVTTD 273 (933)
T ss_pred Cc-ceeeeecCCCeEEE---EEEecCEEEEEEcc
Confidence 65 5666665 665443 34444555555433
No 330
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.75 E-value=0.012 Score=57.65 Aligned_cols=105 Identities=12% Similarity=0.144 Sum_probs=76.1
Q ss_pred ceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCC
Q 018235 231 EGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK 310 (359)
Q Consensus 231 ~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~ 310 (359)
.+.--++..... +++.|+.-|.+++|.-.. +... ..+..+..+.+..++.|++.. ++|.|+..|.|.++-+....
T Consensus 35 ~v~lTc~dst~~-~l~~GsS~G~lyl~~R~~-~~~~--~~~~~~~~~~~~~~~vs~~e~-lvAagt~~g~V~v~ql~~~~ 109 (726)
T KOG3621|consen 35 RVKLTCVDATEE-YLAMGSSAGSVYLYNRHT-GEMR--KLKNEGATGITCVRSVSSVEY-LVAAGTASGRVSVFQLNKEL 109 (726)
T ss_pred eEEEEEeecCCc-eEEEecccceEEEEecCc-hhhh--cccccCccceEEEEEecchhH-hhhhhcCCceEEeehhhccC
Confidence 333334555666 999999999999998654 3322 244445556677788899888 99999999999999887652
Q ss_pred CceEE----e-ecCCCCEEEEEEcCCCCeEEEEee
Q 018235 311 SALTS----F-KAHNADVNVISWNRCWLAVCWHLE 340 (359)
Q Consensus 311 ~~~~~----~-~~h~~~V~~i~~s~~~~~l~~~~~ 340 (359)
.+-.. . ..|...|++++|++++..+..+..
T Consensus 110 p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~ 144 (726)
T KOG3621|consen 110 PRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDS 144 (726)
T ss_pred CCcceeeccccccCCceEEEEEecccccEEeecCC
Confidence 21111 1 347889999999999998887765
No 331
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.63 E-value=0.12 Score=39.15 Aligned_cols=102 Identities=10% Similarity=0.114 Sum_probs=67.3
Q ss_pred eeeEEEeC---CCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCe
Q 018235 168 VNRIRAMT---QNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGR 244 (359)
Q Consensus 168 V~~i~~~p---~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~ 244 (359)
|++++++. ++.+-|+.|++|..|++|+-.. .+..+.- ...+.+|.-... ++
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e-----------------------~~~Ei~e-~~~v~~L~~~~~--~~ 55 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE-----------------------IVAEITE-TDKVTSLCSLGG--GR 55 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc-----------------------EEEEEec-ccceEEEEEcCC--CE
Confidence 55666654 4457888899999999998554 3344433 346677766655 37
Q ss_pred EEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecC---CCCCEEEEEeCCCcEE
Q 018235 245 LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSP---TEPDVFASCSVDGHIA 302 (359)
Q Consensus 245 l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp---~~~~~las~s~Dg~I~ 302 (359)
|+.|-.+|+|-+|+-.. ..|.+ - .+..+.++++.. +|..-|++|-.+|.|-
T Consensus 56 F~Y~l~NGTVGvY~~~~-RlWRi----K--SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 56 FAYALANGTVGVYDRSQ-RLWRI----K--SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EEEEecCCEEEEEeCcc-eeeee----c--cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 99999999999998754 44542 1 223355555443 3444688888888764
No 332
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.55 E-value=0.052 Score=55.41 Aligned_cols=103 Identities=15% Similarity=0.143 Sum_probs=66.4
Q ss_pred EEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEec
Q 018235 180 ICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEP 259 (359)
Q Consensus 180 ~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~ 259 (359)
-...|-.+..++.||.+...+.+- ......+ .......|++-+ +.|+||.|+.+|.|+|||-
T Consensus 544 ~tflGls~n~lfriDpR~~~~k~v---------------~~~~k~Y-~~~~~Fs~~aTt--~~G~iavgs~~G~IRLyd~ 605 (794)
T PF08553_consen 544 QTFLGLSDNSLFRIDPRLSGNKLV---------------DSQSKQY-SSKNNFSCFATT--EDGYIAVGSNKGDIRLYDR 605 (794)
T ss_pred ceEEEECCCceEEeccCCCCCcee---------------ecccccc-ccCCCceEEEec--CCceEEEEeCCCcEEeecc
Confidence 345567788899999986211100 0001111 122244555554 4458999999999999994
Q ss_pred CCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEEC
Q 018235 260 ASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDT 306 (359)
Q Consensus 260 ~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~ 306 (359)
. +... ...+.+-..+|..|..+.+|..+||||- ..|.|+++
T Consensus 606 -~-g~~A--KT~lp~lG~pI~~iDvt~DGkwilaTc~--tyLlLi~t 646 (794)
T PF08553_consen 606 -L-GKRA--KTALPGLGDPIIGIDVTADGKWILATCK--TYLLLIDT 646 (794)
T ss_pred -c-chhh--hhcCCCCCCCeeEEEecCCCcEEEEeec--ceEEEEEE
Confidence 3 2221 2456677899999999999997777774 46777765
No 333
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.55 E-value=0.11 Score=50.36 Aligned_cols=124 Identities=10% Similarity=0.194 Sum_probs=76.0
Q ss_pred CCCCceEEEEeCCCCCC---eEEEEcCCCcEEEEecCCC----CcceecCccccCCCCC--eEEEEecCCCCCEEEEEeC
Q 018235 227 GHKDEGYAIDWNPITTG---RLVTGDCNSCIYLWEPASD----ATWNVDPNPFIGHSAS--VEDLQWSPTEPDVFASCSV 297 (359)
Q Consensus 227 ~h~~~v~~l~~sp~~~~---~l~sgs~dg~I~lwd~~~~----~~~~~~~~~~~~h~~~--V~~v~~sp~~~~~las~s~ 297 (359)
|.-..|+++.|.|.+.. .|++.-....|.+|.+... +++......-.+-.-+ -..+.|||... +|+.-..
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~-iL~VLT~ 132 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKA-ILTVLTA 132 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCc-eEEEEec
Confidence 45567899999987321 4555556888999988631 2333211100011111 13468999998 7776655
Q ss_pred CCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 298 DGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 298 Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
...=.+++++.....+..=....+.|.|.+|.++|..|+.+..+ --.-.|||-.
T Consensus 133 ~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGS---sLHSyiWd~~ 186 (671)
T PF15390_consen 133 RDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGS---SLHSYIWDSA 186 (671)
T ss_pred CceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCC---eEEEEEecCc
Confidence 55445677776533332212356679999999999988877653 4456788753
No 334
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.49 E-value=0.15 Score=53.38 Aligned_cols=160 Identities=13% Similarity=0.205 Sum_probs=93.7
Q ss_pred CceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeE
Q 018235 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRL 245 (359)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l 245 (359)
+.|.++.|..+. +-++.+...|.|.+-|... .+......-...|.+++|||+.. .+
T Consensus 69 ~~i~s~~fl~d~-~~i~v~~~~G~iilvd~et----------------------~~~eivg~vd~GI~aaswS~Dee-~l 124 (1265)
T KOG1920|consen 69 DEIVSVQFLADT-NSICVITALGDIILVDPET----------------------LELEIVGNVDNGISAASWSPDEE-LL 124 (1265)
T ss_pred cceEEEEEeccc-ceEEEEecCCcEEEEcccc----------------------cceeeeeeccCceEEEeecCCCc-EE
Confidence 567788887777 5555667889999887665 22222222344889999999998 88
Q ss_pred EEEcCCCcEEEEec----CCC----------C-----cceecCccccCCC---------------------CCeEEEEec
Q 018235 246 VTGDCNSCIYLWEP----ASD----------A-----TWNVDPNPFIGHS---------------------ASVEDLQWS 285 (359)
Q Consensus 246 ~sgs~dg~I~lwd~----~~~----------~-----~~~~~~~~~~~h~---------------------~~V~~v~~s 285 (359)
+-.+..+++.+-+- -.. + .|-.....|.|.. +.=..|+|-
T Consensus 125 ~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWR 204 (1265)
T KOG1920|consen 125 ALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWR 204 (1265)
T ss_pred EEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEc
Confidence 88887777765432 110 0 0111011122110 111348999
Q ss_pred CCCCCEEEEE-----eCCCcEEEEECCCCCCceEEe-ecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 286 PTEPDVFASC-----SVDGHIAIWDTRVGKSALTSF-KAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 286 p~~~~~las~-----s~Dg~I~iwD~r~~~~~~~~~-~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
-+|. +||+. ..-+.|+|||.. + . +... ..-..-=.+++|-|.|..++.-....+ +..|.++.-+
T Consensus 205 gDg~-~fAVs~~~~~~~~RkirV~drE-g-~-Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~s-d~~IvffErN 274 (1265)
T KOG1920|consen 205 GDGE-YFAVSFVESETGTRKIRVYDRE-G-A-LNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTS-DSDIVFFERN 274 (1265)
T ss_pred cCCc-EEEEEEEeccCCceeEEEeccc-c-h-hhcccCcccccccceeecCCCCeEeeeeecCC-CCcEEEEecC
Confidence 9998 77772 233789999977 3 1 1111 111222356899998888776554333 3356666543
No 335
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=96.46 E-value=0.13 Score=47.86 Aligned_cols=105 Identities=9% Similarity=-0.071 Sum_probs=67.0
Q ss_pred CcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEc---------CCCcEEEEe
Q 018235 188 GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGD---------CNSCIYLWE 258 (359)
Q Consensus 188 g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs---------~dg~I~lwd 258 (359)
++|.+.|... .+.+.++..-..+- .+ .||++..++++.+ .+..|.+||
T Consensus 27 ~~v~ViD~~~---------------------~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D 83 (352)
T TIGR02658 27 TQVYTIDGEA---------------------GRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVID 83 (352)
T ss_pred ceEEEEECCC---------------------CEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEE
Confidence 8999999987 34444443322222 24 9999984445555 588999999
Q ss_pred cCCCCcceecCc----cccCCCCCeEEEEecCCCCCEEEEEeC-CCcEEEEECCCCCCceEEee
Q 018235 259 PASDATWNVDPN----PFIGHSASVEDLQWSPTEPDVFASCSV-DGHIAIWDTRVGKSALTSFK 317 (359)
Q Consensus 259 ~~~~~~~~~~~~----~~~~h~~~V~~v~~sp~~~~~las~s~-Dg~I~iwD~r~~~~~~~~~~ 317 (359)
+.+ .+....+. +..........++++|+|+.++++--. +..|.+.|+.++ +.+..+.
T Consensus 84 ~~t-~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~-kvv~ei~ 145 (352)
T TIGR02658 84 PQT-HLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGK-AFVRMMD 145 (352)
T ss_pred Ccc-CcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCC-cEEEEEe
Confidence 987 33331100 000012334578999999955545534 899999999997 6666664
No 336
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.42 E-value=0.27 Score=47.38 Aligned_cols=134 Identities=13% Similarity=0.159 Sum_probs=74.6
Q ss_pred cCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCC
Q 018235 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~ 242 (359)
...-....+.++|.+ +.++. +.+|.-.|+.... .+. . . .+.+....|++.
T Consensus 30 ~~~~~p~~ls~npng-r~v~V-~g~geY~iyt~~~---------------------~r~-k-~---~G~g~~~vw~~~-- 79 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNG-RFVLV-CGDGEYEIYTALA---------------------WRN-K-A---FGSGLSFVWSSR-- 79 (443)
T ss_dssp E-SS--SEEEE-TTS-SEEEE-EETTEEEEEETTT---------------------TEE-E-E---EEE-SEEEE-TS--
T ss_pred CCCcCCeeEEECCCC-CEEEE-EcCCEEEEEEccC---------------------Ccc-c-c---cCceeEEEEecC--
Confidence 344567899999999 55555 5568888887332 111 1 1 234567899983
Q ss_pred CeEEEEcCCCcEEEE-ecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCC
Q 018235 243 GRLVTGDCNSCIYLW-EPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNA 321 (359)
Q Consensus 243 ~~l~sgs~dg~I~lw-d~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~ 321 (359)
+.+|+-...++|.|+ ++.. .. . ..+. ....+..|-. |. +|+..+.+ .|.+||..++ +.+.++...
T Consensus 80 n~yAv~~~~~~I~I~kn~~~-~~-~---k~i~-~~~~~~~If~---G~-LL~~~~~~-~i~~yDw~~~-~~i~~i~v~-- 145 (443)
T PF04053_consen 80 NRYAVLESSSTIKIYKNFKN-EV-V---KSIK-LPFSVEKIFG---GN-LLGVKSSD-FICFYDWETG-KLIRRIDVS-- 145 (443)
T ss_dssp SEEEEE-TTS-EEEEETTEE--T-T---------SS-EEEEE----SS-SEEEEETT-EEEEE-TTT---EEEEESS---
T ss_pred ccEEEEECCCeEEEEEcCcc-cc-c---eEEc-CCcccceEEc---Cc-EEEEECCC-CEEEEEhhHc-ceeeEEecC--
Confidence 378888888999996 4432 11 0 1122 1124555533 66 66666554 8999999997 677777533
Q ss_pred CEEEEEEcCCCCeEEEEee
Q 018235 322 DVNVISWNRCWLAVCWHLE 340 (359)
Q Consensus 322 ~V~~i~~s~~~~~l~~~~~ 340 (359)
+|..+.|++++.+++..+.
T Consensus 146 ~vk~V~Ws~~g~~val~t~ 164 (443)
T PF04053_consen 146 AVKYVIWSDDGELVALVTK 164 (443)
T ss_dssp E-EEEEE-TTSSEEEEE-S
T ss_pred CCcEEEEECCCCEEEEEeC
Confidence 3899999999999887754
No 337
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.23 E-value=0.79 Score=40.54 Aligned_cols=163 Identities=13% Similarity=0.120 Sum_probs=87.2
Q ss_pred EecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEE--ecCCCCceEEEEeC
Q 018235 161 KVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVK--FGGHKDEGYAIDWN 238 (359)
Q Consensus 161 ~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~v~~l~~s 238 (359)
+.+-...+..|.|+|+...++|+....+.|..++... +.+.. +.+. .-.-+|++.
T Consensus 17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G----------------------~vlr~i~l~g~-~D~EgI~y~ 73 (248)
T PF06977_consen 17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDG----------------------KVLRRIPLDGF-GDYEGITYL 73 (248)
T ss_dssp -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT------------------------EEEEEE-SS--SSEEEEEE-
T ss_pred CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCC----------------------CEEEEEeCCCC-CCceeEEEE
Confidence 3345567999999998768999989999998888654 33333 3442 356688887
Q ss_pred CCCCCeEEEEcCCCcEEEEecCCCCcce--e-----cCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCC--C
Q 018235 239 PITTGRLVTGDCNSCIYLWEPASDATWN--V-----DPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV--G 309 (359)
Q Consensus 239 p~~~~~l~sgs~dg~I~lwd~~~~~~~~--~-----~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~--~ 309 (359)
-.+. ++++--.++.+.++++......+ . .......+...++.|+|+|.+..+|+ +-.....+|+.++. .
T Consensus 74 g~~~-~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v-~kE~~P~~l~~~~~~~~ 151 (248)
T PF06977_consen 74 GNGR-YVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFV-AKERKPKRLYEVNGFPG 151 (248)
T ss_dssp STTE-EEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEE-EEESSSEEEEEEESTT-
T ss_pred CCCE-EEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEE-EeCCCChhhEEEccccC
Confidence 6665 55555568999999884422111 0 00111135567999999999884554 45666677776664 2
Q ss_pred CCceEEe--------ecCCCCEEEEEEcCCCC-eEEEEeeecccceEEEEEe
Q 018235 310 KSALTSF--------KAHNADVNVISWNRCWL-AVCWHLEVMMEHFLFMILD 352 (359)
Q Consensus 310 ~~~~~~~--------~~h~~~V~~i~~s~~~~-~l~~~~~~~~~d~~i~iwd 352 (359)
...+... ......+..++++|... +++.+.. ...|..+|
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~e----s~~l~~~d 199 (248)
T PF06977_consen 152 GFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDE----SRLLLELD 199 (248)
T ss_dssp SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETT----TTEEEEE-
T ss_pred ccceeeccccccccccceeccccceEEcCCCCeEEEEECC----CCeEEEEC
Confidence 1222111 12445688999998754 4444433 44455555
No 338
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.08 E-value=1.4 Score=42.08 Aligned_cols=71 Identities=13% Similarity=0.102 Sum_probs=45.2
Q ss_pred CCCCEEEEEeCCCc--EEEEECCCCCCceEEeec-CCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 287 TEPDVFASCSVDGH--IAIWDTRVGKSALTSFKA-HNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 287 ~~~~~las~s~Dg~--I~iwD~r~~~~~~~~~~~-h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
.+..++++-..++. |+++++..+ .....+.. -.+.|..+...+.+..+.+...+.-.+..+..+|..+++.
T Consensus 335 ~~~~Lvl~~~~~~~~~l~v~~~~~~-~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 335 FKDYLVLSYRENGSSRLRVYDLDDG-KESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp ETTEEEEEEEETTEEEEEEEETT-T-EEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred ECCEEEEEEEECCccEEEEEECCCC-cEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 44445666555554 777888822 33333322 2334677777788888888877777788899999988864
No 339
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=96.06 E-value=0.9 Score=41.17 Aligned_cols=148 Identities=17% Similarity=0.157 Sum_probs=90.4
Q ss_pred ceeeEEEeCCCCcEEEEEeCCCc-EEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeE
Q 018235 167 CVNRIRAMTQNPHICASWADTGH-VQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRL 245 (359)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~dg~-V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l 245 (359)
....++.+|..+..+|.+-.-|+ ..+||......... ....+-..|.|| -.||+++. +|
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~-------------~~a~~gRHFyGH------g~fs~dG~-~L 65 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQR-------------LWAPPGRHFYGH------GVFSPDGR-LL 65 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeE-------------EcCCCCCEEecC------EEEcCCCC-EE
Confidence 34457778866677888777776 46888876211000 011223345555 46899998 77
Q ss_pred EEE-----cCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEE-Ee----------------CCCcEEE
Q 018235 246 VTG-----DCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFAS-CS----------------VDGHIAI 303 (359)
Q Consensus 246 ~sg-----s~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las-~s----------------~Dg~I~i 303 (359)
++. +..|.|-|||...+-..+ ..|..|.-.-..+.|.|+++++++. |+ .+-++.+
T Consensus 66 ytTEnd~~~g~G~IgVyd~~~~~~ri---~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ 142 (305)
T PF07433_consen 66 YTTENDYETGRGVIGVYDAARGYRRI---GEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVY 142 (305)
T ss_pred EEeccccCCCcEEEEEEECcCCcEEE---eEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEE
Confidence 765 335899999997422222 4566666666778899999644433 22 1234455
Q ss_pred EECCCCCCceEE--e--ecCCCCEEEEEEcCCCCeEEEE
Q 018235 304 WDTRVGKSALTS--F--KAHNADVNVISWNRCWLAVCWH 338 (359)
Q Consensus 304 wD~r~~~~~~~~--~--~~h~~~V~~i~~s~~~~~l~~~ 338 (359)
.|.+++ ..+.. + .-|.-.|..++++++|..++..
T Consensus 143 ld~~sG-~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~ 180 (305)
T PF07433_consen 143 LDARSG-ALLEQVELPPDLHQLSIRHLAVDGDGTVAFAM 180 (305)
T ss_pred EecCCC-ceeeeeecCccccccceeeEEecCCCcEEEEE
Confidence 566665 33333 3 3366779999999998766543
No 340
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=96.03 E-value=0.1 Score=46.01 Aligned_cols=40 Identities=15% Similarity=0.363 Sum_probs=33.8
Q ss_pred CCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe
Q 018235 275 HSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF 316 (359)
Q Consensus 275 h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~ 316 (359)
....|..+..||++. +||+...+|.|.||++-+. ......
T Consensus 228 ~~d~i~kmSlSPdg~-~La~ih~sG~lsLW~iPsL-~~~~~W 267 (282)
T PF15492_consen 228 EQDGIFKMSLSPDGS-LLACIHFSGSLSLWEIPSL-RLQRSW 267 (282)
T ss_pred CCCceEEEEECCCCC-EEEEEEcCCeEEEEecCcc-hhhccc
Confidence 457899999999999 9999999999999999876 444444
No 341
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=95.97 E-value=1.1 Score=39.75 Aligned_cols=168 Identities=14% Similarity=0.115 Sum_probs=86.3
Q ss_pred CCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCe
Q 018235 165 QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGR 244 (359)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~ 244 (359)
.+..-.|++...+ .++++--.++.+.++++............ ..-.+.....+....-+|+|++.+. .
T Consensus 64 ~~D~EgI~y~g~~-~~vl~~Er~~~L~~~~~~~~~~~~~~~~~----------~~~~l~~~~~~N~G~EGla~D~~~~-~ 131 (248)
T PF06977_consen 64 FGDYEGITYLGNG-RYVLSEERDQRLYIFTIDDDTTSLDRADV----------QKISLGFPNKGNKGFEGLAYDPKTN-R 131 (248)
T ss_dssp -SSEEEEEE-STT-EEEEEETTTTEEEEEEE----TT--EEEE----------EEEE---S---SS--EEEEEETTTT-E
T ss_pred CCCceeEEEECCC-EEEEEEcCCCcEEEEEEeccccccchhhc----------eEEecccccCCCcceEEEEEcCCCC-E
Confidence 4678889998777 56665556899999998552211110000 0000011122445688999999987 5
Q ss_pred EEEEcCCCcEEEEecCC--C-Ccce-ecCcc---ccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe-
Q 018235 245 LVTGDCNSCIYLWEPAS--D-ATWN-VDPNP---FIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF- 316 (359)
Q Consensus 245 l~sgs~dg~I~lwd~~~--~-~~~~-~~~~~---~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~- 316 (359)
|+.+-...-..||.++. . .... ..... .......+.+++++|...++++.....+.|.++| +.+ +++..+
T Consensus 132 L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G-~~~~~~~ 209 (248)
T PF06977_consen 132 LFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQG-RVVSSLS 209 (248)
T ss_dssp EEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT---EEEEEE
T ss_pred EEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCC-CEEEEEE
Confidence 65665565666766643 1 1111 00011 1123456789999999887999999999999999 444 444443
Q ss_pred -ec--CC-----CCEEEEEEcCCCCeEEEEeeecccceEEEEE
Q 018235 317 -KA--HN-----ADVNVISWNRCWLAVCWHLEVMMEHFLFMIL 351 (359)
Q Consensus 317 -~~--h~-----~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iw 351 (359)
.. |. ...-.|+|.++|.+.+.+ . ++.+..+
T Consensus 210 L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-E----pNlfy~f 247 (248)
T PF06977_consen 210 LDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-E----PNLFYRF 247 (248)
T ss_dssp -STTGGG-SS---SEEEEEE-TT--EEEEE-T----TTEEEEE
T ss_pred eCCcccCcccccCCccEEEECCCCCEEEEc-C----CceEEEe
Confidence 22 11 235679999999877766 2 5555443
No 342
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.95 E-value=0.025 Score=35.96 Aligned_cols=31 Identities=23% Similarity=0.502 Sum_probs=28.3
Q ss_pred CCCeEEEEecCCCCCEEEEEeCCCcEEEEECC
Q 018235 276 SASVEDLQWSPTEPDVFASCSVDGHIAIWDTR 307 (359)
Q Consensus 276 ~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r 307 (359)
...|..++|||... +||.++.+|.|.|+.+.
T Consensus 11 ~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMD-LIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCC-EEEEEECCCeEEEEECC
Confidence 35699999999999 99999999999999984
No 343
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=95.93 E-value=0.99 Score=39.13 Aligned_cols=101 Identities=16% Similarity=0.095 Sum_probs=58.5
Q ss_pred CCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCC----------e-EEEEecCCCCCEEEEEeCCCc-EEEEECCC
Q 018235 241 TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSAS----------V-EDLQWSPTEPDVFASCSVDGH-IAIWDTRV 308 (359)
Q Consensus 241 ~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~----------V-~~v~~sp~~~~~las~s~Dg~-I~iwD~r~ 308 (359)
+. .++.+..++.|..+|+++ ++.+ ..+...... + ..+.+. .+ .+..++.++. +.+ |+.+
T Consensus 122 ~~-~~~~~~~~g~l~~~d~~t-G~~~---w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~v~~~~~~g~~~~~-d~~t 192 (238)
T PF13360_consen 122 GD-RLYVGTSSGKLVALDPKT-GKLL---WKYPVGEPRGSSPISSFSDINGSPVIS-DG--RVYVSSGDGRVVAV-DLAT 192 (238)
T ss_dssp TT-EEEEEETCSEEEEEETTT-TEEE---EEEESSTT-SS--EEEETTEEEEEECC-TT--EEEEECCTSSEEEE-ETTT
T ss_pred cC-EEEEEeccCcEEEEecCC-CcEE---EEeecCCCCCCcceeeecccccceEEE-CC--EEEEEcCCCeEEEE-ECCC
Confidence 44 777787799999999988 4432 112111111 1 222332 33 4555666664 666 9999
Q ss_pred CCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 309 GKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 309 ~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
+ ..+.... ...+..+ ....+..++.... ++.+.+||.++|++
T Consensus 193 g-~~~w~~~--~~~~~~~-~~~~~~~l~~~~~----~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 193 G-EKLWSKP--ISGIYSL-PSVDGGTLYVTSS----DGRLYALDLKTGKV 234 (238)
T ss_dssp T-EEEEEEC--SS-ECEC-EECCCTEEEEEET----TTEEEEEETTTTEE
T ss_pred C-CEEEEec--CCCccCC-ceeeCCEEEEEeC----CCEEEEEECCCCCE
Confidence 7 4443333 2223332 3455666665554 78899999999975
No 344
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.88 E-value=0.13 Score=53.55 Aligned_cols=152 Identities=13% Similarity=0.096 Sum_probs=92.4
Q ss_pred CceeeEEEeCCCCcE-EEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEE---ecCCCCceEEEEeCCCC
Q 018235 166 GCVNRIRAMTQNPHI-CASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVK---FGGHKDEGYAIDWNPIT 241 (359)
Q Consensus 166 ~~V~~i~~~p~~~~~-lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~h~~~v~~l~~sp~~ 241 (359)
-.|+.+...++.... +...+.+-.|..||+......... ...|+.. ......-+.++.|+|.-
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~-------------~~~pl~~s~ts~ek~vf~~~~~wnP~v 167 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYE-------------TTVPLKNSATSFEKPVFQLKNVWNPLV 167 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhh-------------hccccccccchhccccccccccccCCc
Confidence 456666666765222 222333446888999873321100 0112111 11111234578999998
Q ss_pred CCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEee----
Q 018235 242 TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK---- 317 (359)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~---- 317 (359)
.-..+.+..|+.|++..+... ...+ .. ..-+..+++++|+|.|. -++.|-..|++.=|-..-. ....+.
T Consensus 168 p~n~av~l~dlsl~V~~~~~~-~~~v--~s-~p~t~~~Tav~WSprGK-Ql~iG~nnGt~vQy~P~le--ik~~ip~Pp~ 240 (1405)
T KOG3630|consen 168 PLNSAVDLSDLSLRVKSTKQL-AQNV--TS-FPVTNSQTAVLWSPRGK-QLFIGRNNGTEVQYEPSLE--IKSEIPEPPV 240 (1405)
T ss_pred cchhhhhccccchhhhhhhhh-hhhh--cc-cCcccceeeEEeccccc-eeeEecCCCeEEEeecccc--eeecccCCCc
Confidence 877888888999999887652 2221 22 23456789999999999 8888999999887754432 112221
Q ss_pred cCCCCEEEEEEcCCCCeEEE
Q 018235 318 AHNADVNVISWNRCWLAVCW 337 (359)
Q Consensus 318 ~h~~~V~~i~~s~~~~~l~~ 337 (359)
.....|.+|+|-....++++
T Consensus 241 ~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 241 EENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred CCCcceeEEEEecceeEEEE
Confidence 11467999999887776654
No 345
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=95.82 E-value=0.49 Score=44.57 Aligned_cols=110 Identities=15% Similarity=0.079 Sum_probs=64.1
Q ss_pred EEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEec
Q 018235 180 ICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEP 259 (359)
Q Consensus 180 ~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~ 259 (359)
.+..++.+|.++.||... ++.+...... ...... ..+. .++.++.+|.|+.+|.
T Consensus 243 ~vy~~~~~g~l~a~d~~t---------------------G~~~W~~~~~--~~~~p~--~~~~-~vyv~~~~G~l~~~d~ 296 (377)
T TIGR03300 243 QVYAVSYQGRVAALDLRS---------------------GRVLWKRDAS--SYQGPA--VDDN-RLYVTDADGVVVALDR 296 (377)
T ss_pred EEEEEEcCCEEEEEECCC---------------------CcEEEeeccC--CccCce--EeCC-EEEEECCCCeEEEEEC
Confidence 455567788899999876 3333332211 111111 1233 7888888999999999
Q ss_pred CCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCC
Q 018235 260 ASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNAD 322 (359)
Q Consensus 260 ~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~ 322 (359)
.+ ++.+-....+.+. .+..... .+. .+++++.+|.|+++|.+++ +.+.++..+...
T Consensus 297 ~t-G~~~W~~~~~~~~--~~ssp~i--~g~-~l~~~~~~G~l~~~d~~tG-~~~~~~~~~~~~ 352 (377)
T TIGR03300 297 RS-GSELWKNDELKYR--QLTAPAV--VGG-YLVVGDFEGYLHWLSREDG-SFVARLKTDGSG 352 (377)
T ss_pred CC-CcEEEccccccCC--ccccCEE--ECC-EEEEEeCCCEEEEEECCCC-CEEEEEEcCCCc
Confidence 77 3322111111111 1111111 244 7888899999999999987 667677655543
No 346
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.79 E-value=0.034 Score=47.50 Aligned_cols=102 Identities=12% Similarity=0.121 Sum_probs=61.9
Q ss_pred eEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCC--EEEEEeCCCcEEEEECCCCCCceEEeecCC-
Q 018235 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPD--VFASCSVDGHIAIWDTRVGKSALTSFKAHN- 320 (359)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~--~las~s~Dg~I~iwD~r~~~~~~~~~~~h~- 320 (359)
.++.|+.+|.|.+|..+..+... ..+..-...|.++ -|.+.. +..+++.||.||.|.+.-. +.+-....|+
T Consensus 72 ~~~vG~~dg~v~~~n~n~~g~~~---d~~~s~~e~i~~~--Ip~~~~~~~~c~~~~dg~ir~~n~~p~-k~~g~~g~h~~ 145 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNLEGAHS---DRVCSGEESIDLG--IPNGRDSSLGCVGAQDGRIRACNIKPN-KVLGYVGQHNF 145 (238)
T ss_pred eEEeecccceEEEecCCccchHH---Hhhhcccccceec--cccccccceeEEeccCCceeeeccccC-ceeeeeccccC
Confidence 78899999999999987433321 1121222233322 244433 8888999999999998876 5555555666
Q ss_pred CCEEEEEEcCCCCeEEEE-eeecccceEEEEEeCc
Q 018235 321 ADVNVISWNRCWLAVCWH-LEVMMEHFLFMILDCS 354 (359)
Q Consensus 321 ~~V~~i~~s~~~~~l~~~-~~~~~~d~~i~iwd~~ 354 (359)
.++..+..+..++++... .. .+..++.|++.
T Consensus 146 ~~~e~~ivv~sd~~i~~a~~S---~d~~~k~W~ve 177 (238)
T KOG2444|consen 146 ESGEELIVVGSDEFLKIADTS---HDRVLKKWNVE 177 (238)
T ss_pred CCcceeEEecCCceEEeeccc---cchhhhhcchh
Confidence 455555555555555443 22 25667777653
No 347
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.76 E-value=0.15 Score=48.74 Aligned_cols=128 Identities=12% Similarity=0.101 Sum_probs=78.5
Q ss_pred CeEEEEEecCCCceeeEEEeCCCC------cEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCC
Q 018235 155 PILQLRKVAHQGCVNRIRAMTQNP------HICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGH 228 (359)
Q Consensus 155 ~~~~~~~~~H~~~V~~i~~~p~~~------~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 228 (359)
.+++....-|.. |+-+.+.|+.. .--..|-.+..|+-||.+-+.. ..+..-.+|
T Consensus 366 GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~-------------------~kl~~~q~k 425 (644)
T KOG2395|consen 366 GKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK-------------------NKLAVVQSK 425 (644)
T ss_pred ceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCc-------------------ceeeeeecc
Confidence 334334433443 77777777651 1123356788899999886321 112222233
Q ss_pred CC--ceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEEC
Q 018235 229 KD--EGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDT 306 (359)
Q Consensus 229 ~~--~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~ 306 (359)
.- .-..-++.-.+.|++|.||.+|-|+|||- .+..- ...+.+-..+|.-|..+.+|..+|+|| +..+.|.|+
T Consensus 426 qy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~A---KTAlPgLG~~I~hVdvtadGKwil~Tc--~tyLlLi~t 499 (644)
T KOG2395|consen 426 QYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRA---KTALPGLGDAIKHVDVTADGKWILATC--KTYLLLIDT 499 (644)
T ss_pred ccccccccceeeecCCceEEEeecCCcEEeehh-hhhhh---hhcccccCCceeeEEeeccCcEEEEec--ccEEEEEEE
Confidence 21 11122334456679999999999999996 42222 245778889999999999999667666 456777766
Q ss_pred CC
Q 018235 307 RV 308 (359)
Q Consensus 307 r~ 308 (359)
+-
T Consensus 500 ~~ 501 (644)
T KOG2395|consen 500 LI 501 (644)
T ss_pred ec
Confidence 53
No 348
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.67 E-value=0.82 Score=43.71 Aligned_cols=117 Identities=15% Similarity=0.162 Sum_probs=68.6
Q ss_pred eeeEEEeCCCCcEEEEEeCCC----cEEEEECCCCccccccccccccCCCCCCCCCCCcE-EecCCCCceEEEEeCCCCC
Q 018235 168 VNRIRAMTQNPHICASWADTG----HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLV-KFGGHKDEGYAIDWNPITT 242 (359)
Q Consensus 168 V~~i~~~p~~~~~lat~s~dg----~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~sp~~~ 242 (359)
+..+.++|++..++++.+..| .|+++|+.+ ++.+. .+.. .....+.|.+++.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~t---------------------g~~l~d~i~~--~~~~~~~W~~d~~ 182 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLET---------------------GKFLPDGIEN--PKFSSVSWSDDGK 182 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTT---------------------TEEEEEEEEE--EESEEEEECTTSS
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCC---------------------CcCcCCcccc--cccceEEEeCCCC
Confidence 335678999965665655555 499999987 22221 1211 1222499999988
Q ss_pred CeEEEEcCC----------CcEEEEecCCCCcceecCccccCCCC-C-eEEEEecCCCCCEEEEEeCCCc---EEEEECC
Q 018235 243 GRLVTGDCN----------SCIYLWEPASDATWNVDPNPFIGHSA-S-VEDLQWSPTEPDVFASCSVDGH---IAIWDTR 307 (359)
Q Consensus 243 ~~l~sgs~d----------g~I~lwd~~~~~~~~~~~~~~~~h~~-~-V~~v~~sp~~~~~las~s~Dg~---I~iwD~r 307 (359)
+++.+...+ ..|++|.+-+...-- ...|..... . ...+..++++..++++.....+ +.+.|+.
T Consensus 183 ~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d--~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~ 260 (414)
T PF02897_consen 183 GFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSED--ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLD 260 (414)
T ss_dssp EEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG---EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECC
T ss_pred EEEEEEeCcccccccCCCCcEEEEEECCCChHhC--eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecc
Confidence 666665333 237778775532210 122333222 2 5688999999966766655444 7888888
Q ss_pred CC
Q 018235 308 VG 309 (359)
Q Consensus 308 ~~ 309 (359)
..
T Consensus 261 ~~ 262 (414)
T PF02897_consen 261 DG 262 (414)
T ss_dssp CT
T ss_pred cc
Confidence 63
No 349
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.66 E-value=0.73 Score=40.43 Aligned_cols=126 Identities=14% Similarity=0.047 Sum_probs=75.7
Q ss_pred eCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcE-EecCCCCceEEEEeCCCCCCeEEEEcCCC
Q 018235 174 MTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLV-KFGGHKDEGYAIDWNPITTGRLVTGDCNS 252 (359)
Q Consensus 174 ~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~sp~~~~~l~sgs~dg 252 (359)
.++...+++.|+..+.+.--|... ++... ..-+-.-+..++- .+. +++.|...|
T Consensus 19 ~~dskT~v~igSHs~~~~avd~~s---------------------G~~~We~ilg~RiE~sa~v---vgd-fVV~GCy~g 73 (354)
T KOG4649|consen 19 CNDSKTLVVIGSHSGIVIAVDPQS---------------------GNLIWEAILGVRIECSAIV---VGD-FVVLGCYSG 73 (354)
T ss_pred ecCCceEEEEecCCceEEEecCCC---------------------CcEEeehhhCceeeeeeEE---ECC-EEEEEEccC
Confidence 344446777788888887777766 22221 1112222344444 344 788899999
Q ss_pred cEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcC
Q 018235 253 CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNR 330 (359)
Q Consensus 253 ~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~ 330 (359)
.+++.+.+++.+. ..|..-..--...+..+++. ++..++.|+..+..|.++. .++...+--.+-..+-+.++
T Consensus 74 ~lYfl~~~tGs~~----w~f~~~~~vk~~a~~d~~~g-lIycgshd~~~yalD~~~~-~cVykskcgG~~f~sP~i~~ 145 (354)
T KOG4649|consen 74 GLYFLCVKTGSQI----WNFVILETVKVRAQCDFDGG-LIYCGSHDGNFYALDPKTY-GCVYKSKCGGGTFVSPVIAP 145 (354)
T ss_pred cEEEEEecchhhe----eeeeehhhhccceEEcCCCc-eEEEecCCCcEEEeccccc-ceEEecccCCceeccceecC
Confidence 9999999885332 12222111112234577888 9999999999999999987 66666543333222333444
No 350
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=95.56 E-value=1.4 Score=41.78 Aligned_cols=159 Identities=13% Similarity=0.096 Sum_probs=101.2
Q ss_pred ceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcE-EecCCCCceEEEEeCCCCCCeE
Q 018235 167 CVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLV-KFGGHKDEGYAIDWNPITTGRL 245 (359)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~sp~~~~~l 245 (359)
.-+.+.+++.+..+.++...++.|.+.|... ..... ...+. .-..+++++++....
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~---------------------~~~~~~~~vG~--~P~~~~~~~~~~~vY 131 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTAT---------------------NTVLGSIPVGL--GPVGLAVDPDGKYVY 131 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcc---------------------cceeeEeeecc--CCceEEECCCCCEEE
Confidence 3456778888867888878889999999655 12111 22222 556899999997344
Q ss_pred EEEc--CCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEE------ee
Q 018235 246 VTGD--CNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS------FK 317 (359)
Q Consensus 246 ~sgs--~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~------~~ 317 (359)
++-. .++++.+.|..+ ..... ..+.+- .+ ..++++|++..++++-..++.|.+.|.... .+.. +.
T Consensus 132 V~n~~~~~~~vsvid~~t-~~~~~--~~~vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~--~v~~~~~~~~~~ 204 (381)
T COG3391 132 VANAGNGNNTVSVIDAAT-NKVTA--TIPVGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGN--SVVRGSVGSLVG 204 (381)
T ss_pred EEecccCCceEEEEeCCC-CeEEE--EEecCC-Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCc--ceeccccccccc
Confidence 4444 367888888766 33331 223332 23 889999999966777778999999997764 2221 22
Q ss_pred cCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 318 AHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 318 ~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
... .-..+.+++++..+...... ..++.+...+...+.
T Consensus 205 ~~~-~P~~i~v~~~g~~~yV~~~~-~~~~~v~~id~~~~~ 242 (381)
T COG3391 205 VGT-GPAGIAVDPDGNRVYVANDG-SGSNNVLKIDTATGN 242 (381)
T ss_pred cCC-CCceEEECCCCCEEEEEecc-CCCceEEEEeCCCce
Confidence 222 24567899999976665442 113466666666554
No 351
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.52 E-value=0.21 Score=50.25 Aligned_cols=138 Identities=11% Similarity=0.176 Sum_probs=86.5
Q ss_pred CCCceeeEEEeCCC-CcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC--CC
Q 018235 164 HQGCVNRIRAMTQN-PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN--PI 240 (359)
Q Consensus 164 H~~~V~~i~~~p~~-~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s--p~ 240 (359)
-...||-|+...-+ ..+|+.+.+||.|.+|....-...+............ ....+|.+.+.- ...+++|+++ ..
T Consensus 99 ~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~-r~~i~P~f~~~v-~~SaWGLdIh~~~~ 176 (717)
T PF08728_consen 99 FPHTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFS-RLKIKPFFHLRV-GASAWGLDIHDYKK 176 (717)
T ss_pred CCceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccc-cccCCCCeEeec-CCceeEEEEEecCc
Confidence 44568888776544 4689999999999999875422111111000000000 012456666654 3388999998 66
Q ss_pred CCCeEEEEcCCCcEEEEecCCC-CcceecCccccCCCCCeEEEEecCCC--CC---EEEEEeCCCcEEEEEC
Q 018235 241 TTGRLVTGDCNSCIYLWEPASD-ATWNVDPNPFIGHSASVEDLQWSPTE--PD---VFASCSVDGHIAIWDT 306 (359)
Q Consensus 241 ~~~~l~sgs~dg~I~lwd~~~~-~~~~~~~~~~~~h~~~V~~v~~sp~~--~~---~las~s~Dg~I~iwD~ 306 (359)
.+ +||.+++...|.||-+... .+.. ...-..|...|.+|+|-++. .. .+++++-.|.+-+|++
T Consensus 177 ~r-lIAVSsNs~~VTVFaf~l~~~r~~--~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 177 SR-LIAVSSNSQEVTVFAFALVDERFY--HVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ce-EEEEecCCceEEEEEEeccccccc--cccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 66 8898998888988866542 1111 11122366789999998765 22 6777888999999888
No 352
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.48 E-value=0.066 Score=55.17 Aligned_cols=96 Identities=16% Similarity=0.208 Sum_probs=66.2
Q ss_pred cEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEe
Q 018235 179 HICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWE 258 (359)
Q Consensus 179 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd 258 (359)
..++.|++.|.|...|+... ..|...-..-..+|.+++|+.+|. +++.|-.+|.|.+||
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~n--------------------L~~~~~ne~v~~~Vtsvafn~dg~-~l~~G~~~G~V~v~D 158 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGN--------------------LGPLHQNERVQGPVTSVAFNQDGS-LLLAGLGDGHVTVWD 158 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcc--------------------cchhhcCCccCCcceeeEecCCCc-eeccccCCCcEEEEE
Confidence 56888899999999998872 233222223345899999999998 999999999999999
Q ss_pred cCCCCcceecCccccCCCCCeEEE---EecCCCCCEEEEEeCCCc
Q 018235 259 PASDATWNVDPNPFIGHSASVEDL---QWSPTEPDVFASCSVDGH 300 (359)
Q Consensus 259 ~~~~~~~~~~~~~~~~h~~~V~~v---~~sp~~~~~las~s~Dg~ 300 (359)
+.. ++.. +.+..|..++..+ .|...+. .+.++..-|+
T Consensus 159 ~~~-~k~l---~~i~e~~ap~t~vi~v~~t~~nS-~llt~D~~Gs 198 (1206)
T KOG2079|consen 159 MHR-AKIL---KVITEHGAPVTGVIFVGRTSQNS-KLLTSDTGGS 198 (1206)
T ss_pred ccC-Ccce---eeeeecCCccceEEEEEEeCCCc-EEEEccCCCc
Confidence 977 4443 4454455444443 3433444 6666666664
No 353
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=95.46 E-value=0.84 Score=43.00 Aligned_cols=104 Identities=12% Similarity=0.076 Sum_probs=59.8
Q ss_pred cEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEe
Q 018235 179 HICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWE 258 (359)
Q Consensus 179 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd 258 (359)
..++.++.+|.|..+|... ++.+..+........+... .+. .++.++.+|.++.+|
T Consensus 66 ~~v~v~~~~g~v~a~d~~t---------------------G~~~W~~~~~~~~~~~p~v--~~~-~v~v~~~~g~l~ald 121 (377)
T TIGR03300 66 GKVYAADADGTVVALDAET---------------------GKRLWRVDLDERLSGGVGA--DGG-LVFVGTEKGEVIALD 121 (377)
T ss_pred CEEEEECCCCeEEEEEccC---------------------CcEeeeecCCCCcccceEE--cCC-EEEEEcCCCEEEEEE
Confidence 3566677889999999876 3444333322211111211 233 788888899999999
Q ss_pred cCCCCcceecCccccCCCCCeEEEEecC--CCCCEEEEEeCCCcEEEEECCCCCCceEEe
Q 018235 259 PASDATWNVDPNPFIGHSASVEDLQWSP--TEPDVFASCSVDGHIAIWDTRVGKSALTSF 316 (359)
Q Consensus 259 ~~~~~~~~~~~~~~~~h~~~V~~v~~sp--~~~~~las~s~Dg~I~iwD~r~~~~~~~~~ 316 (359)
..+ ++..-. ..+. ..+. -+| .+. .++.++.++.|..||.+++ +.+..+
T Consensus 122 ~~t-G~~~W~-~~~~---~~~~---~~p~v~~~-~v~v~~~~g~l~a~d~~tG-~~~W~~ 171 (377)
T TIGR03300 122 AED-GKELWR-AKLS---SEVL---SPPLVANG-LVVVRTNDGRLTALDAATG-ERLWTY 171 (377)
T ss_pred CCC-CcEeee-eccC---ceee---cCCEEECC-EEEEECCCCeEEEEEcCCC-ceeeEE
Confidence 877 432210 1111 1111 112 133 5666778999999999987 555444
No 354
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=95.42 E-value=0.11 Score=45.35 Aligned_cols=103 Identities=13% Similarity=0.036 Sum_probs=57.6
Q ss_pred eEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe-ecCCC-
Q 018235 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF-KAHNA- 321 (359)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~-~~h~~- 321 (359)
.+++++.++.|..||..+ ++.+-. ..+.+.-... ... .+. .++.++.++.|+.+|.+++ +.+..+ .....
T Consensus 38 ~v~~~~~~~~l~~~d~~t-G~~~W~-~~~~~~~~~~---~~~-~~~-~v~v~~~~~~l~~~d~~tG-~~~W~~~~~~~~~ 109 (238)
T PF13360_consen 38 RVYVASGDGNLYALDAKT-GKVLWR-FDLPGPISGA---PVV-DGG-RVYVGTSDGSLYALDAKTG-KVLWSIYLTSSPP 109 (238)
T ss_dssp EEEEEETTSEEEEEETTT-SEEEEE-EECSSCGGSG---EEE-ETT-EEEEEETTSEEEEEETTTS-CEEEEEEE-SSCT
T ss_pred EEEEEcCCCEEEEEECCC-CCEEEE-eeccccccce---eee-ccc-ccccccceeeeEecccCCc-ceeeeeccccccc
Confidence 777788899999999977 442210 1111111111 111 233 5566668889999999998 666663 22211
Q ss_pred --CEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 322 --DVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 322 --~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
..........+..++.... .+.|..+|..+|.+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~----~g~l~~~d~~tG~~ 144 (238)
T PF13360_consen 110 AGVRSSSSPAVDGDRLYVGTS----SGKLVALDPKTGKL 144 (238)
T ss_dssp CSTB--SEEEEETTEEEEEET----CSEEEEEETTTTEE
T ss_pred cccccccCceEecCEEEEEec----cCcEEEEecCCCcE
Confidence 1111222222665665554 56678888887764
No 355
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.42 E-value=0.052 Score=34.47 Aligned_cols=33 Identities=18% Similarity=0.129 Sum_probs=29.2
Q ss_pred CCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCC
Q 018235 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRS 197 (359)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~ 197 (359)
....|.++.|+|.. .++|.++.+|.|.|+.+..
T Consensus 10 l~~~v~~~~w~P~m-dLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 10 LPSRVSCMSWCPTM-DLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred CCCcEEEEEECCCC-CEEEEEECCCeEEEEECCC
Confidence 34579999999999 7999999999999999854
No 356
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.38 E-value=0.056 Score=46.24 Aligned_cols=106 Identities=12% Similarity=-0.039 Sum_probs=61.2
Q ss_pred cEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEe
Q 018235 179 HICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWE 258 (359)
Q Consensus 179 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd 258 (359)
.-++.|+.+|.|.+|....... ....+..-...|-++--+-....+..++..+|.|+.|.
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~--------------------~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n 130 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGA--------------------HSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACN 130 (238)
T ss_pred ceEEeecccceEEEecCCccch--------------------HHHhhhcccccceeccccccccceeEEeccCCceeeec
Confidence 5688899999999998874211 00011111112222211212212788899999999999
Q ss_pred cCCCCcceecCccccCCC-CCeEEEEecCCCCCEEEEE--eCCCcEEEEECCCC
Q 018235 259 PASDATWNVDPNPFIGHS-ASVEDLQWSPTEPDVFASC--SVDGHIAIWDTRVG 309 (359)
Q Consensus 259 ~~~~~~~~~~~~~~~~h~-~~V~~v~~sp~~~~~las~--s~Dg~I~iwD~r~~ 309 (359)
+.- .+.+ .....|+ .+++....+-.+. +++.. |.|..++.|++...
T Consensus 131 ~~p-~k~~---g~~g~h~~~~~e~~ivv~sd~-~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 131 IKP-NKVL---GYVGQHNFESGEELIVVGSDE-FLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred ccc-Ccee---eeeccccCCCcceeEEecCCc-eEEeeccccchhhhhcchhhh
Confidence 865 3322 2233455 5555555555555 66666 77777777777653
No 357
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=95.34 E-value=0.9 Score=34.55 Aligned_cols=82 Identities=17% Similarity=0.227 Sum_probs=54.7
Q ss_pred EeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEE
Q 018235 236 DWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS 315 (359)
Q Consensus 236 ~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~ 315 (359)
+|.-++...|+.|+.|..|++|+-.. .+ ..+. -++.|..++-...+ .|+.+..+|+|-+|+-.. .+..
T Consensus 9 d~d~dg~~eLlvGs~D~~IRvf~~~e---~~---~Ei~-e~~~v~~L~~~~~~--~F~Y~l~NGTVGvY~~~~---RlWR 76 (111)
T PF14783_consen 9 DFDGDGENELLVGSDDFEIRVFKGDE---IV---AEIT-ETDKVTSLCSLGGG--RFAYALANGTVGVYDRSQ---RLWR 76 (111)
T ss_pred ecCCCCcceEEEecCCcEEEEEeCCc---EE---EEEe-cccceEEEEEcCCC--EEEEEecCCEEEEEeCcc---eeee
Confidence 44556666899999999999997533 22 2232 34667777665553 799999999999998643 4555
Q ss_pred eecCCCCEEEEEEcC
Q 018235 316 FKAHNADVNVISWNR 330 (359)
Q Consensus 316 ~~~h~~~V~~i~~s~ 330 (359)
++.... ++++.+..
T Consensus 77 iKSK~~-~~~~~~~D 90 (111)
T PF14783_consen 77 IKSKNQ-VTSMAFYD 90 (111)
T ss_pred eccCCC-eEEEEEEc
Confidence 543333 55555443
No 358
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.29 E-value=0.88 Score=44.46 Aligned_cols=129 Identities=16% Similarity=0.191 Sum_probs=80.4
Q ss_pred EEecCCCceeeEEEeCCC----CcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCC---c-
Q 018235 160 RKVAHQGCVNRIRAMTQN----PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKD---E- 231 (359)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~----~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~- 231 (359)
+.++.-..|..+.|.|-+ +.++|.- ....|.||.+...... ..+.+.+-..+-. +
T Consensus 51 ~viGqFEhV~GlsW~P~~~~~~paLLAVQ-HkkhVtVWqL~~s~~e----------------~~K~l~sQtcEi~e~~pv 113 (671)
T PF15390_consen 51 KVIGQFEHVHGLSWAPPCTADTPALLAVQ-HKKHVTVWQLCPSTTE----------------RNKLLMSQTCEIREPFPV 113 (671)
T ss_pred cEeeccceeeeeeecCcccCCCCceEEEe-ccceEEEEEeccCccc----------------cccceeeeeeeccCCccc
Confidence 345667789999999864 5778774 4578999998741110 1222222212111 1
Q ss_pred -eEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCC
Q 018235 232 -GYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG 309 (359)
Q Consensus 232 -v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~ 309 (359)
-.+.-|+|... .|+.-.....-.+++++..+..+. .-+ ...+-|.|.+|.++|..++++.+..=.-+|||-...
T Consensus 114 LpQGCVWHPk~~-iL~VLT~~dvSV~~sV~~d~srVk--aDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 114 LPQGCVWHPKKA-ILTVLTARDVSVLPSVHCDSSRVK--ADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred CCCcccccCCCc-eEEEEecCceeEeeeeeeCCceEE--Eec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 12678999998 766655444445667766444331 122 456789999999999966666666555778986653
No 359
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=95.26 E-value=0.59 Score=44.41 Aligned_cols=130 Identities=14% Similarity=0.147 Sum_probs=65.8
Q ss_pred CCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCC---C
Q 018235 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP---I 240 (359)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp---~ 240 (359)
..|.|++++.+.-| ++|.|..+|.+.|.|++.+.-..... ......-......+.+|.|+. .
T Consensus 85 ~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~-------------i~~~~~~~~~~~~vt~ieF~vm~~~ 149 (395)
T PF08596_consen 85 KQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNEN-------------IRESFLSKSSSSYVTSIEFSVMTLG 149 (395)
T ss_dssp -S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEE-------------GGG--T-SS----EEEEEEEEEE-T
T ss_pred cCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeecc-------------ccccccccccccCeeEEEEEEEecC
Confidence 47999999998877 89999999999999998732111100 000000011223566777752 1
Q ss_pred CC----CeEEEEcCCCcEEEEecC--CCCcceecCcccc-CCCCCeEEEE-ecCC--------------------CCCEE
Q 018235 241 TT----GRLVTGDCNSCIYLWEPA--SDATWNVDPNPFI-GHSASVEDLQ-WSPT--------------------EPDVF 292 (359)
Q Consensus 241 ~~----~~l~sgs~dg~I~lwd~~--~~~~~~~~~~~~~-~h~~~V~~v~-~sp~--------------------~~~~l 292 (359)
+. -+|+.|...|.+.+|.+. ..+.+.+...... .+.+.|..|. ++.+ -+ -+
T Consensus 150 ~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~-g~ 228 (395)
T PF08596_consen 150 GDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIP-GY 228 (395)
T ss_dssp TSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT-----EE
T ss_pred CCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcC-cE
Confidence 11 178889999999999774 2233332222222 4556655554 2111 12 23
Q ss_pred EEEeCCCcEEEEECCCC
Q 018235 293 ASCSVDGHIAIWDTRVG 309 (359)
Q Consensus 293 as~s~Dg~I~iwD~r~~ 309 (359)
+.......+||+..-+.
T Consensus 229 vVvvSe~~irv~~~~~~ 245 (395)
T PF08596_consen 229 VVVVSESDIRVFKPPKS 245 (395)
T ss_dssp EEEE-SSEEEEE-TT--
T ss_pred EEEEcccceEEEeCCCC
Confidence 34444677999988876
No 360
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.24 E-value=1.5 Score=41.64 Aligned_cols=161 Identities=15% Similarity=0.105 Sum_probs=103.4
Q ss_pred CCeEEEEEecCCC------ceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecC
Q 018235 154 TPILQLRKVAHQG------CVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGG 227 (359)
Q Consensus 154 ~~~~~~~~~~H~~------~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (359)
.+.+-+.++.|+. .-|.+-|...+..++|+- .|.+.=|-..... ...|...-..
T Consensus 5 sGalyhelihhPslfcnipesngvFfDDaNkqlfavr--Sggatgvvvkgpn------------------dDVpiSfdm~ 64 (657)
T KOG2377|consen 5 SGALYHELIHHPSLFCNIPESNGVFFDDANKQLFAVR--SGGATGVVVKGPN------------------DDVPISFDMD 64 (657)
T ss_pred CcceEEEEecCchhhccCCcccceeeccCcceEEEEe--cCCeeEEEEeCCC------------------CCCCceeeec
Confidence 5667677777773 345555555454455543 3666667665521 1233333334
Q ss_pred CCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECC
Q 018235 228 HKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTR 307 (359)
Q Consensus 228 h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r 307 (359)
..++|.++.||++.. .||.--.+.+|.+++.................+..|...+|+.+. -+|-.+..| +-+|-..
T Consensus 65 d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~--e~A~i~~~G-~e~y~v~ 140 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSST--EIAFITDQG-IEFYQVL 140 (657)
T ss_pred CCCceeEEEeccCcc-eEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCe--eEEEEecCC-eEEEEEc
Confidence 556999999999998 999999999999998743222111113333445668889998774 456555544 6666655
Q ss_pred CCCCceEEeecCCCCEEEEEEcCCCCeEEEE
Q 018235 308 VGKSALTSFKAHNADVNVISWNRCWLAVCWH 338 (359)
Q Consensus 308 ~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~ 338 (359)
.....++.++.|+..|+=-.|.++-..++..
T Consensus 141 pekrslRlVks~~~nvnWy~yc~et~v~LL~ 171 (657)
T KOG2377|consen 141 PEKRSLRLVKSHNLNVNWYMYCPETAVILLS 171 (657)
T ss_pred hhhhhhhhhhhcccCccEEEEccccceEeee
Confidence 5445666678888889888999887765544
No 361
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.22 E-value=0.54 Score=42.82 Aligned_cols=149 Identities=14% Similarity=0.185 Sum_probs=72.4
Q ss_pred ecCCCceeeEEEeCCCCcEEEEEeCCCcE-EEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCC
Q 018235 162 VAHQGCVNRIRAMTQNPHICASWADTGHV-QVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI 240 (359)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V-~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~ 240 (359)
..-.+.++.+..++++ .++++++ .|.+ .-|+--.. ...+. -......+.+|.|+|+
T Consensus 141 ~~~~gs~~~~~r~~dG-~~vavs~-~G~~~~s~~~G~~-------------------~w~~~--~r~~~~riq~~gf~~~ 197 (302)
T PF14870_consen 141 SETSGSINDITRSSDG-RYVAVSS-RGNFYSSWDPGQT-------------------TWQPH--NRNSSRRIQSMGFSPD 197 (302)
T ss_dssp -S----EEEEEE-TTS--EEEEET-TSSEEEEE-TT-S-------------------S-EEE--E--SSS-EEEEEE-TT
T ss_pred cCCcceeEeEEECCCC-cEEEEEC-cccEEEEecCCCc-------------------cceEE--ccCccceehhceecCC
Confidence 3445888888888988 6777654 4554 46664431 12222 1223458999999999
Q ss_pred CCCeEEEEcCCCcEEEEe-cCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe---
Q 018235 241 TTGRLVTGDCNSCIYLWE-PASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF--- 316 (359)
Q Consensus 241 ~~~~l~sgs~dg~I~lwd-~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~--- 316 (359)
+. +.+ ....|.|++=+ ......|.....++....-.+.+++|.+.+. ++|+|+.. .+ +.-...+ +.=...
T Consensus 198 ~~-lw~-~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~-~wa~gg~G-~l-~~S~DgG-ktW~~~~~~ 271 (302)
T PF14870_consen 198 GN-LWM-LARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNE-IWAVGGSG-TL-LVSTDGG-KTWQKDRVG 271 (302)
T ss_dssp S--EEE-EETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS--EEEEESTT--E-EEESSTT-SS-EE-GGG
T ss_pred CC-EEE-EeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCC-EEEEeCCc-cE-EEeCCCC-ccceECccc
Confidence 75 444 44788888877 2222333322223323345689999999887 77766654 33 2333444 222222
Q ss_pred ecCCCCEEEEEEcCCCCeEEEEe
Q 018235 317 KAHNADVNVISWNRCWLAVCWHL 339 (359)
Q Consensus 317 ~~h~~~V~~i~~s~~~~~l~~~~ 339 (359)
..-.+.+..|.|....+-++.+.
T Consensus 272 ~~~~~n~~~i~f~~~~~gf~lG~ 294 (302)
T PF14870_consen 272 ENVPSNLYRIVFVNPDKGFVLGQ 294 (302)
T ss_dssp TTSSS---EEEEEETTEEEEE-S
T ss_pred cCCCCceEEEEEcCCCceEEECC
Confidence 12345678888887777666664
No 362
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=95.02 E-value=3.3 Score=39.23 Aligned_cols=163 Identities=10% Similarity=0.079 Sum_probs=99.8
Q ss_pred ceeeEEEeCCCCcEEEEEe--CCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEE-ecCCCCceEEEEeCCCCCC
Q 018235 167 CVNRIRAMTQNPHICASWA--DTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVK-FGGHKDEGYAIDWNPITTG 243 (359)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s--~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~sp~~~~ 243 (359)
.-..+++.|.+..+.++-. .+++|.+.|-.. .....+ ..+- .+ ..+++.|++..
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t---------------------~~~~~~~~vG~-~P-~~~a~~p~g~~ 173 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAAT---------------------NKVTATIPVGN-TP-TGVAVDPDGNK 173 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCC---------------------CeEEEEEecCC-Cc-ceEEECCCCCe
Confidence 5567888888866666655 467788877766 222222 2222 23 78999999984
Q ss_pred eEEEEcCCCcEEEEecCCCCcceecC-ccccCCCCCeEEEEecCCCCCEEEEEeCC--CcEEEEECCCCCCceEE-eecC
Q 018235 244 RLVTGDCNSCIYLWEPASDATWNVDP-NPFIGHSASVEDLQWSPTEPDVFASCSVD--GHIAIWDTRVGKSALTS-FKAH 319 (359)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~-~~~~~h~~~V~~v~~sp~~~~~las~s~D--g~I~iwD~r~~~~~~~~-~~~h 319 (359)
.+++-..++.|.+.|.... ...... .....-...-..+.++|++..+.++...+ +.+...|..++ ..... +..-
T Consensus 174 vyv~~~~~~~v~vi~~~~~-~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~-~v~~~~~~~~ 251 (381)
T COG3391 174 VYVTNSDDNTVSVIDTSGN-SVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATG-NVTATDLPVG 251 (381)
T ss_pred EEEEecCCCeEEEEeCCCc-ceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCc-eEEEeccccc
Confidence 4444457889999997552 211000 00111223345688999999666666655 68999999886 33322 2111
Q ss_pred CCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 320 NADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 320 ~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
......+..+|.|..+...... .+.+.+.|..+..
T Consensus 252 ~~~~~~v~~~p~g~~~yv~~~~---~~~V~vid~~~~~ 286 (381)
T COG3391 252 SGAPRGVAVDPAGKAAYVANSQ---GGTVSVIDGATDR 286 (381)
T ss_pred cCCCCceeECCCCCEEEEEecC---CCeEEEEeCCCCc
Confidence 1134567889999988776442 4556666666543
No 363
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=95.00 E-value=0.26 Score=46.77 Aligned_cols=136 Identities=11% Similarity=0.115 Sum_probs=78.1
Q ss_pred ceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCcccc--cc-cccccc------------------CCCCCC-CCCCCcEE
Q 018235 167 CVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNAL--AE-SETIVG------------------QGAPQV-SNQSPLVK 224 (359)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~--~~-~~~~~~------------------~~~~~~-~~~~~~~~ 224 (359)
.|+.+.+.+.. .-+|.+...|.|.||.+....... .. ...... -..... ..-.|...
T Consensus 3 ~v~~vs~a~~t-~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPET-LELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTT-TEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCC-ceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 57889999987 678888999999999876532211 00 000000 000000 11245556
Q ss_pred ecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccC------CCCCeEEEEecC---CC----CCE
Q 018235 225 FGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIG------HSASVEDLQWSP---TE----PDV 291 (359)
Q Consensus 225 ~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~------h~~~V~~v~~sp---~~----~~~ 291 (359)
+....++|.+++.|..| ++|.|..+|.+.|.|+|.+ ..+.. ..+.. ....|+++.|+. .+ .-+
T Consensus 82 ~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGP-avI~~-~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~ 157 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGP-AVIYN-ENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSIC 157 (395)
T ss_dssp E---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTT-EEEEE-EEGGG--T-SS----EEEEEEEEEE-TTSSSEEEE
T ss_pred eeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCC-eEEee-ccccccccccccccCeeEEEEEEEecCCCcccceE
Confidence 66678899999998664 9999999999999999763 22211 11111 345688888862 11 126
Q ss_pred EEEEeCCCcEEEEECC
Q 018235 292 FASCSVDGHIAIWDTR 307 (359)
Q Consensus 292 las~s~Dg~I~iwD~r 307 (359)
++.|...|.+.+|.+.
T Consensus 158 L~vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 158 LLVGTNSGNVLTFKIL 173 (395)
T ss_dssp EEEEETTSEEEEEEEE
T ss_pred EEEEeCCCCEEEEEEe
Confidence 7788889999999875
No 364
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.98 E-value=0.2 Score=52.17 Aligned_cols=176 Identities=11% Similarity=0.067 Sum_probs=97.4
Q ss_pred ceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCC-ceEEEEeCCCCCC-e
Q 018235 167 CVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKD-EGYAIDWNPITTG-R 244 (359)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~sp~~~~-~ 244 (359)
.-+++..+++- .+++.++..+.+.|+-....+......... +..-...+...+..|.. .+..+..++++.- .
T Consensus 43 ~sn~la~sn~y-sl~Fa~~nsk~L~vfgtknlLi~~it~D~~-----n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~ 116 (1405)
T KOG3630|consen 43 SSNNLAISNSY-SLFFAASNSKSLAVFGTKNLLIDHITSDST-----NSLVDADENLTFKVEKEIPIVIFVCFHDATDSV 116 (1405)
T ss_pred hhhhhhccccc-ceEEEecCCcceeeeccccceeeccccccc-----ccccccccccceeeeccccceEEEeccCCceEE
Confidence 34556666665 344445666766666543311100000000 00001123345555554 5666666777542 2
Q ss_pred EEEEcCCCcEEEEecCCCCccee-cCccccCC------CCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEee
Q 018235 245 LVTGDCNSCIYLWEPASDATWNV-DPNPFIGH------SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK 317 (359)
Q Consensus 245 l~sgs~dg~I~lwd~~~~~~~~~-~~~~~~~h------~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~ 317 (359)
++..+++-.|..||++....... ...+|..| ..-+.++.|+|.-...+|.+..|+.|++.-+......+..+
T Consensus 117 v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~- 195 (1405)
T KOG3630|consen 117 VVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSF- 195 (1405)
T ss_pred EEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhccc-
Confidence 23334444688999986322110 01223222 23456889999988788999999999998877652233333
Q ss_pred cCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeC
Q 018235 318 AHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDC 353 (359)
Q Consensus 318 ~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~ 353 (359)
.....+++++|+|.|+.++.+.. .+.+.-+.+
T Consensus 196 p~t~~~Tav~WSprGKQl~iG~n----nGt~vQy~P 227 (1405)
T KOG3630|consen 196 PVTNSQTAVLWSPRGKQLFIGRN----NGTEVQYEP 227 (1405)
T ss_pred CcccceeeEEeccccceeeEecC----CCeEEEeec
Confidence 34556899999999998887765 444444433
No 365
>PRK02888 nitrous-oxide reductase; Validated
Probab=94.86 E-value=2.8 Score=41.80 Aligned_cols=76 Identities=8% Similarity=0.114 Sum_probs=53.6
Q ss_pred CceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCccee---------cCccccCCCCCeEEEEecCCCCCEEEEEeCCCc
Q 018235 230 DEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNV---------DPNPFIGHSASVEDLQWSPTEPDVFASCSVDGH 300 (359)
Q Consensus 230 ~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~---------~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~ 300 (359)
...++++++|++...++++..+.+|.+.|+.....+.. ...... ...-.-.+|.++|. .+.|...|..
T Consensus 321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev--GlGPLHTaFDg~G~-aytslf~dsq 397 (635)
T PRK02888 321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL--GLGPLHTAFDGRGN-AYTTLFLDSQ 397 (635)
T ss_pred CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc--CCCcceEEECCCCC-EEEeEeecce
Confidence 35678999999996677777799999999976322110 000001 11223468999987 8999999999
Q ss_pred EEEEECCC
Q 018235 301 IAIWDTRV 308 (359)
Q Consensus 301 I~iwD~r~ 308 (359)
|..|++..
T Consensus 398 v~kwn~~~ 405 (635)
T PRK02888 398 IVKWNIEA 405 (635)
T ss_pred eEEEehHH
Confidence 99999876
No 366
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=94.71 E-value=3 Score=38.30 Aligned_cols=165 Identities=11% Similarity=0.110 Sum_probs=96.5
Q ss_pred hhhhhcccccCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeccCCcccCCCCCCCCCCCCCCCCC
Q 018235 57 YNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSE 136 (359)
Q Consensus 57 Y~~~~~~~~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~~~l~~~~~~~~~~~~~~~~~d~~~~ 136 (359)
-..++...++-|+.++.-+.+ ++++|. .+.|.|+++..
T Consensus 79 l~~i~~~~~~g~V~ai~~~~~-------------~lv~~~------g~~l~v~~l~~----------------------- 116 (321)
T PF03178_consen 79 LKLIHSTEVKGPVTAICSFNG-------------RLVVAV------GNKLYVYDLDN----------------------- 116 (321)
T ss_dssp EEEEEEEEESS-EEEEEEETT-------------EEEEEE------TTEEEEEEEET-----------------------
T ss_pred EEEEEEEeecCcceEhhhhCC-------------EEEEee------cCEEEEEEccC-----------------------
Confidence 356778888888888887733 477777 46899999941
Q ss_pred CCCCCCCCCcccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCC
Q 018235 137 SSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQV 216 (359)
Q Consensus 137 ~~~~~~d~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~ 216 (359)
+...+..........|.++.... ++++.|..-..|.++.+....
T Consensus 117 ----------------~~~l~~~~~~~~~~~i~sl~~~~---~~I~vgD~~~sv~~~~~~~~~----------------- 160 (321)
T PF03178_consen 117 ----------------SKTLLKKAFYDSPFYITSLSVFK---NYILVGDAMKSVSLLRYDEEN----------------- 160 (321)
T ss_dssp ----------------TSSEEEEEEE-BSSSEEEEEEET---TEEEEEESSSSEEEEEEETTT-----------------
T ss_pred ----------------cccchhhheecceEEEEEEeccc---cEEEEEEcccCEEEEEEEccC-----------------
Confidence 02244455555555777777764 577788888888888665421
Q ss_pred CCCCCcEEec--CCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCC------Cc-ceecCccccCCCCCeEEE---Ee
Q 018235 217 SNQSPLVKFG--GHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASD------AT-WNVDPNPFIGHSASVEDL---QW 284 (359)
Q Consensus 217 ~~~~~~~~~~--~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~------~~-~~~~~~~~~~h~~~V~~v---~~ 284 (359)
..+..+. .....++++.+-+++. .++.++.+|.|.++..... +. .+.. .........|+++ ++
T Consensus 161 ---~~l~~va~d~~~~~v~~~~~l~d~~-~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~-~~~f~lg~~v~~~~~~~l 235 (321)
T PF03178_consen 161 ---NKLILVARDYQPRWVTAAEFLVDED-TIIVGDKDGNLFVLRYNPEIPNSRDGDPKLER-ISSFHLGDIVNSFRRGSL 235 (321)
T ss_dssp ---E-EEEEEEESS-BEEEEEEEE-SSS-EEEEEETTSEEEEEEE-SS-SSTTTTTTBEEE-EEEEE-SS-EEEEEE--S
T ss_pred ---CEEEEEEecCCCccEEEEEEecCCc-EEEEEcCCCeEEEEEECCCCccccccccccee-EEEEECCCccceEEEEEe
Confidence 1111221 1233678888886776 8999999999999877531 11 1111 1111234567777 55
Q ss_pred cCC--CCC-----EEEEEeCCCcEEEE
Q 018235 285 SPT--EPD-----VFASCSVDGHIAIW 304 (359)
Q Consensus 285 sp~--~~~-----~las~s~Dg~I~iw 304 (359)
.|. +.. .++.++.+|.|.+.
T Consensus 236 ~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 236 IPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp S--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred eecCCCCcccccceEEEEecCCEEEEE
Confidence 552 221 47778888888843
No 367
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.62 E-value=0.05 Score=55.02 Aligned_cols=137 Identities=20% Similarity=0.286 Sum_probs=81.9
Q ss_pred ecCCCceeeEEEeCCC-CcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCC
Q 018235 162 VAHQGCVNRIRAMTQN-PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI 240 (359)
Q Consensus 162 ~~H~~~V~~i~~~p~~-~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~ 240 (359)
.+..|.|-.++|.... +.+. -.-|.+.||++..-...+. ..-.+.........+--+.|+|.
T Consensus 129 kgf~G~v~dl~fah~~~pk~~---~~vg~lfVy~vd~l~G~iq--------------~~l~v~~~~p~gs~~~~V~wcp~ 191 (1283)
T KOG1916|consen 129 KGFPGGVGDLQFAHTKCPKGR---RLVGELFVYDVDVLQGEIQ--------------PQLEVTPITPYGSDPQLVSWCPI 191 (1283)
T ss_pred hcCCCCcccccccccCChHHH---HHhhhhheeehHhhccccc--------------cceEEeecCcCCCCcceeeeccc
Confidence 3667888888884332 2222 3447899999876211110 00111112222234455677765
Q ss_pred CC--CeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEE-----------ecCCCCCEEEEEeCCCcEEEEECC
Q 018235 241 TT--GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQ-----------WSPTEPDVFASCSVDGHIAIWDTR 307 (359)
Q Consensus 241 ~~--~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~-----------~sp~~~~~las~s~Dg~I~iwD~r 307 (359)
-. -++..+..++.|++..++.... ..|.+|...+.+++ .||+|. +||.++.||.+++|.+-
T Consensus 192 ~~~~~~ic~~~~~~~i~lL~~~ra~~-----~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt-v~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 192 AVNKVYICYGLKGGEIRLLNINRALR-----SLFRSHSQRVTDMAFFAEGVLKLASLSPDGT-VFAWAISDGSVGFYQIY 265 (1283)
T ss_pred ccccceeeeccCCCceeEeeechHHH-----HHHHhcCCCcccHHHHhhchhhheeeCCCCc-EEEEeecCCccceeeee
Confidence 32 2677778888998877654221 33556777666654 589999 99999999999998765
Q ss_pred CCC----CceEEeecCCC
Q 018235 308 VGK----SALTSFKAHNA 321 (359)
Q Consensus 308 ~~~----~~~~~~~~h~~ 321 (359)
-.. .+++..+.|..
T Consensus 266 i~g~~~~rclhewkphd~ 283 (1283)
T KOG1916|consen 266 ITGKIVHRCLHEWKPHDK 283 (1283)
T ss_pred eeccccHhhhhccCCCCC
Confidence 321 35566667763
No 368
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.50 E-value=0.38 Score=46.37 Aligned_cols=134 Identities=10% Similarity=0.145 Sum_probs=67.5
Q ss_pred CCceeeEEEeCCCCcEEEEEeCCCcEEEE-ECCCCccccccccccccCCCCCCCCCCCcEEec--CCCCceEEEEeCCCC
Q 018235 165 QGCVNRIRAMTQNPHICASWADTGHVQVW-DLRSHLNALAESETIVGQGAPQVSNQSPLVKFG--GHKDEGYAIDWNPIT 241 (359)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~sp~~ 241 (359)
.|.-..+.|.+.+ .+|+-...++|.|+ ++.. .....+. .....+++ |
T Consensus 68 ~G~g~~~vw~~~n--~yAv~~~~~~I~I~kn~~~----------------------~~~k~i~~~~~~~~If~------G 117 (443)
T PF04053_consen 68 FGSGLSFVWSSRN--RYAVLESSSTIKIYKNFKN----------------------EVVKSIKLPFSVEKIFG------G 117 (443)
T ss_dssp EEE-SEEEE-TSS--EEEEE-TTS-EEEEETTEE-----------------------TT-----SS-EEEEE-------S
T ss_pred cCceeEEEEecCc--cEEEEECCCeEEEEEcCcc----------------------ccceEEcCCcccceEEc------C
Confidence 3555667888844 57777778999996 3322 1111221 11223333 5
Q ss_pred CCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCC----------CC
Q 018235 242 TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG----------KS 311 (359)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~----------~~ 311 (359)
. +|+..+ ++.|.+||..+ ++.+ +.+. -..|..|.|++++. ++|-.+.+ .+.|++.... ..
T Consensus 118 ~-LL~~~~-~~~i~~yDw~~-~~~i---~~i~--v~~vk~V~Ws~~g~-~val~t~~-~i~il~~~~~~~~~~~~~g~e~ 187 (443)
T PF04053_consen 118 N-LLGVKS-SDFICFYDWET-GKLI---RRID--VSAVKYVIWSDDGE-LVALVTKD-SIYILKYNLEAVAAIPEEGVED 187 (443)
T ss_dssp S-SEEEEE-TTEEEEE-TTT---EE---EEES--S-E-EEEEE-TTSS-EEEEE-S--SEEEEEE-HHHHHHBTTTB-GG
T ss_pred c-EEEEEC-CCCEEEEEhhH-ccee---eEEe--cCCCcEEEEECCCC-EEEEEeCC-eEEEEEecchhcccccccCchh
Confidence 5 555554 45899999987 4443 3333 22489999999998 77777654 6777765431 00
Q ss_pred ceEEeecCCCCEEEEEEcCCCCeEEEEee
Q 018235 312 ALTSFKAHNADVNVISWNRCWLAVCWHLE 340 (359)
Q Consensus 312 ~~~~~~~h~~~V~~i~~s~~~~~l~~~~~ 340 (359)
....+..-...|.+..|..+ .+++...
T Consensus 188 ~f~~~~E~~~~IkSg~W~~d--~fiYtT~ 214 (443)
T PF04053_consen 188 AFELIHEISERIKSGCWVED--CFIYTTS 214 (443)
T ss_dssp GEEEEEEE-S--SEEEEETT--EEEEE-T
T ss_pred ceEEEEEecceeEEEEEEcC--EEEEEcC
Confidence 33344333567889999866 5555543
No 369
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.46 E-value=3.3 Score=36.73 Aligned_cols=148 Identities=14% Similarity=0.079 Sum_probs=83.7
Q ss_pred ceeeEEEeCCCCcEEEEEeCC--CcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCe
Q 018235 167 CVNRIRAMTQNPHICASWADT--GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGR 244 (359)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~d--g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~ 244 (359)
.+...++++++..+.+....+ ..++++.... .....+.+. .+..-.|++++. .
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~----------------------~~~~~~~g~--~l~~PS~d~~g~-~ 79 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG----------------------PVRPVLTGG--SLTRPSWDPDGW-V 79 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC----------------------cceeeccCC--ccccccccCCCC-E
Confidence 678889999995555544233 4444444332 222222222 677889999976 6
Q ss_pred EEEEcCCCcEEEEe-cCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEe---CCCcEEEEECCCC-CC-------c
Q 018235 245 LVTGDCNSCIYLWE-PASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS---VDGHIAIWDTRVG-KS-------A 312 (359)
Q Consensus 245 l~sgs~dg~I~lwd-~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s---~Dg~I~iwD~r~~-~~-------~ 312 (359)
.+....+...+++. ...+....+... ...-...|..+.+||+|. .+|... .++.|.|--+... .. +
T Consensus 80 W~v~~~~~~~~~~~~~~~g~~~~~~v~-~~~~~~~I~~l~vSpDG~-RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~ 157 (253)
T PF10647_consen 80 WTVDDGSGGVRVVRDSASGTGEPVEVD-WPGLRGRITALRVSPDGT-RVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGP 157 (253)
T ss_pred EEEEcCCCceEEEEecCCCcceeEEec-ccccCCceEEEEECCCCc-EEEEEEecCCCCeEEEEEEEeCCCCCcceeccc
Confidence 66656566666663 222111110001 111112899999999999 554443 3566776644322 11 1
Q ss_pred eEEeecCCCCEEEEEEcCCCCeEEEEeee
Q 018235 313 LTSFKAHNADVNVISWNRCWLAVCWHLEV 341 (359)
Q Consensus 313 ~~~~~~h~~~V~~i~~s~~~~~l~~~~~~ 341 (359)
..........+..++|.+++.+++.....
T Consensus 158 ~~~~~~~~~~v~~v~W~~~~~L~V~~~~~ 186 (253)
T PF10647_consen 158 RRVAPPLLSDVTDVAWSDDSTLVVLGRSA 186 (253)
T ss_pred eEecccccCcceeeeecCCCEEEEEeCCC
Confidence 11112335678999999999988877554
No 370
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.40 E-value=0.13 Score=53.13 Aligned_cols=90 Identities=14% Similarity=0.206 Sum_probs=62.7
Q ss_pred eEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCE
Q 018235 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADV 323 (359)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V 323 (359)
.++.|+..|.+-..|.+..-.|. ..-..-.++|.+++|+-+|. +++.|-.+|.|.+||+..+ +.++.+..|..+.
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~---~~ne~v~~~Vtsvafn~dg~-~l~~G~~~G~V~v~D~~~~-k~l~~i~e~~ap~ 175 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPL---HQNERVQGPVTSVAFNQDGS-LLLAGLGDGHVTVWDMHRA-KILKVITEHGAPV 175 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchh---hcCCccCCcceeeEecCCCc-eeccccCCCcEEEEEccCC-cceeeeeecCCcc
Confidence 78889888999988886521211 11122457999999999999 9999999999999999987 6666665555543
Q ss_pred E---EEEEcCCCCeEEEE
Q 018235 324 N---VISWNRCWLAVCWH 338 (359)
Q Consensus 324 ~---~i~~s~~~~~l~~~ 338 (359)
. .+.|..++..++.+
T Consensus 176 t~vi~v~~t~~nS~llt~ 193 (1206)
T KOG2079|consen 176 TGVIFVGRTSQNSKLLTS 193 (1206)
T ss_pred ceEEEEEEeCCCcEEEEc
Confidence 3 33444455544443
No 371
>PRK10115 protease 2; Provisional
Probab=94.24 E-value=7.6 Score=39.94 Aligned_cols=52 Identities=10% Similarity=-0.021 Sum_probs=37.6
Q ss_pred CCceeeeChhHhhhhhcccccCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEe
Q 018235 46 EGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKV 111 (359)
Q Consensus 46 ~~~~l~~~~~~Y~~~~~~~~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~ 111 (359)
..|++.+|+..+..=+. .|-.-.+.|-||. .+|+++..+.+.+...|.|.++
T Consensus 109 ~~~~~llD~n~~a~~~~---~~~l~~~~~Spdg-----------~~la~~~d~~G~E~~~l~v~d~ 160 (686)
T PRK10115 109 DEWETLLDANKRAAHSE---FYTLGGMAITPDN-----------TIMALAEDFLSRRQYGIRFRNL 160 (686)
T ss_pred CCCEEEEcchhhccCCC---cEEEeEEEECCCC-----------CEEEEEecCCCcEEEEEEEEEC
Confidence 34799999988743222 1333467777875 4888888888888888999988
No 372
>PRK02888 nitrous-oxide reductase; Validated
Probab=94.17 E-value=1.8 Score=43.12 Aligned_cols=96 Identities=8% Similarity=0.013 Sum_probs=60.5
Q ss_pred CCcEEEEecCC----CCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCC-----------ceEE
Q 018235 251 NSCIYLWEPAS----DATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS-----------ALTS 315 (359)
Q Consensus 251 dg~I~lwd~~~----~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~-----------~~~~ 315 (359)
++.|.+.|.++ .... ..+..-......+.++|+++.+++++..+.+|.|.|+.+... .+..
T Consensus 295 gn~V~VID~~t~~~~~~~v----~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvae 370 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSAL----TRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAE 370 (635)
T ss_pred CCEEEEEECCccccCCcce----EEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEe
Confidence 45688888765 1111 122233456677899999998888888999999999998621 1222
Q ss_pred eecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 316 FKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 316 ~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
+.. ...-...+|.++|.... ++- .+..+..|++..
T Consensus 371 vev-GlGPLHTaFDg~G~ayt-slf---~dsqv~kwn~~~ 405 (635)
T PRK02888 371 PEL-GLGPLHTAFDGRGNAYT-TLF---LDSQIVKWNIEA 405 (635)
T ss_pred ecc-CCCcceEEECCCCCEEE-eEe---ecceeEEEehHH
Confidence 222 22234568888876333 222 266688888654
No 373
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=94.15 E-value=0.31 Score=40.57 Aligned_cols=31 Identities=19% Similarity=0.450 Sum_probs=26.4
Q ss_pred CeEEEEecCCC-----CCEEEEEeCCCcEEEEECCC
Q 018235 278 SVEDLQWSPTE-----PDVFASCSVDGHIAIWDTRV 308 (359)
Q Consensus 278 ~V~~v~~sp~~-----~~~las~s~Dg~I~iwD~r~ 308 (359)
.|..++|||.| ..+||+...++.|.||....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 78899999953 56899999999999998664
No 374
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.10 E-value=0.19 Score=30.99 Aligned_cols=33 Identities=30% Similarity=0.433 Sum_probs=27.5
Q ss_pred CCeEEEEecCCCC--CEEEEEeCCCcEEEEECCCC
Q 018235 277 ASVEDLQWSPTEP--DVFASCSVDGHIAIWDTRVG 309 (359)
Q Consensus 277 ~~V~~v~~sp~~~--~~las~s~Dg~I~iwD~r~~ 309 (359)
+.|.++.|||... .+|+-.-.-|.|.|+|+|+.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 4688999998544 58888888999999999953
No 375
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=93.71 E-value=4.8 Score=35.86 Aligned_cols=144 Identities=13% Similarity=0.119 Sum_probs=80.4
Q ss_pred cEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEe
Q 018235 179 HICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWE 258 (359)
Q Consensus 179 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd 258 (359)
..++.|+++| |+++++.. ...+..... ...|..|...+.-. .|+.-+ |+.+++++
T Consensus 8 ~~L~vGt~~G-l~~~~~~~--------------------~~~~~~i~~--~~~I~ql~vl~~~~-~llvLs-d~~l~~~~ 62 (275)
T PF00780_consen 8 DRLLVGTEDG-LYVYDLSD--------------------PSKPTRILK--LSSITQLSVLPELN-LLLVLS-DGQLYVYD 62 (275)
T ss_pred CEEEEEECCC-EEEEEecC--------------------CccceeEee--cceEEEEEEecccC-EEEEEc-CCccEEEE
Confidence 5677788888 99999833 123333222 22388999888776 666554 59999999
Q ss_pred cCCCCcceecC--c--------cccCCCCCeEEEE--ecCCCCCEEEEEeCCCcEEEEECCCCC----CceEEeecCCCC
Q 018235 259 PASDATWNVDP--N--------PFIGHSASVEDLQ--WSPTEPDVFASCSVDGHIAIWDTRVGK----SALTSFKAHNAD 322 (359)
Q Consensus 259 ~~~~~~~~~~~--~--------~~~~h~~~V~~v~--~sp~~~~~las~s~Dg~I~iwD~r~~~----~~~~~~~~h~~~ 322 (359)
+..-....... . ........+...+ =.+.+. ..+.+...+.|.||...... .....+. ....
T Consensus 63 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~-~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~ 140 (275)
T PF00780_consen 63 LDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGS-RRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDP 140 (275)
T ss_pred chhhccccccccccccccccccccccccCCeeEEeeccccccc-eEEEEEECCEEEEEEEECCcccccceeEEEE-cCCC
Confidence 87522111000 0 0111223343333 112333 45556666699998877631 2333443 3467
Q ss_pred EEEEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 323 VNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 323 V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
+..++|. +..++.+.. ..+.+.|..++
T Consensus 141 ~~~i~~~--~~~i~v~~~-----~~f~~idl~~~ 167 (275)
T PF00780_consen 141 PSSIAFL--GNKICVGTS-----KGFYLIDLNTG 167 (275)
T ss_pred cEEEEEe--CCEEEEEeC-----CceEEEecCCC
Confidence 8889998 555555543 22555555544
No 376
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.51 E-value=3.5 Score=42.30 Aligned_cols=86 Identities=17% Similarity=0.210 Sum_probs=55.4
Q ss_pred CceEEEEeCCCCCCeEEEEcCCCcEEEEecCCC--------Ccce-------ecCcccc-CCCCCeEEEEecCCC--CCE
Q 018235 230 DEGYAIDWNPITTGRLVTGDCNSCIYLWEPASD--------ATWN-------VDPNPFI-GHSASVEDLQWSPTE--PDV 291 (359)
Q Consensus 230 ~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~--------~~~~-------~~~~~~~-~h~~~V~~v~~sp~~--~~~ 291 (359)
-+|..|..||.|. +||-.+..|.+.+.=++.. +... +....|. .+...|..+.|||.+ ...
T Consensus 85 f~v~~i~~n~~g~-~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGS-LLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCC-EEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 3788999999998 7777776665444333321 1100 0111111 345678999999985 237
Q ss_pred EEEEeCCCcEEEEECCCCCCceEEe
Q 018235 292 FASCSVDGHIAIWDTRVGKSALTSF 316 (359)
Q Consensus 292 las~s~Dg~I~iwD~r~~~~~~~~~ 316 (359)
|+.=..|++||+||+.....+.+.+
T Consensus 164 l~vLtsdn~lR~y~~~~~~~p~~v~ 188 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDPQHPWQVL 188 (717)
T ss_pred EEEEecCCEEEEEecCCCCCCeEEE
Confidence 7788899999999998764444443
No 377
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=93.51 E-value=0.93 Score=42.96 Aligned_cols=133 Identities=13% Similarity=0.167 Sum_probs=66.7
Q ss_pred CCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCC--ceEEEEe--CCCCCCeEEEEcCCCcEEEEecCCC
Q 018235 187 TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKD--EGYAIDW--NPITTGRLVTGDCNSCIYLWEPASD 262 (359)
Q Consensus 187 dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~--sp~~~~~l~sgs~dg~I~lwd~~~~ 262 (359)
-.++++||+.. .+++.++.--.. -...|.| .|....-++.+.-.++|..|--...
T Consensus 221 G~~l~vWD~~~---------------------r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~ 279 (461)
T PF05694_consen 221 GHSLHVWDWST---------------------RKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDD 279 (461)
T ss_dssp --EEEEEETTT---------------------TEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ET
T ss_pred cCeEEEEECCC---------------------CcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCC
Confidence 36899999988 455555543322 2234444 4555534555556667766644333
Q ss_pred CcceecC------------------ccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEee-------
Q 018235 263 ATWNVDP------------------NPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK------- 317 (359)
Q Consensus 263 ~~~~~~~------------------~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~------- 317 (359)
+.|.... +.|..-..-|++|..|.+.+.+.+++-..|.||-||+.....+...-+
T Consensus 280 g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~ 359 (461)
T PF05694_consen 280 GEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSI 359 (461)
T ss_dssp TEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTT
T ss_pred CCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEe
Confidence 4443210 112222456899999999998889999999999999998744433211
Q ss_pred -----------cCCCCEEEEEEcCCCCeEEEEee
Q 018235 318 -----------AHNADVNVISWNRCWLAVCWHLE 340 (359)
Q Consensus 318 -----------~h~~~V~~i~~s~~~~~l~~~~~ 340 (359)
.-.+..+.|..|.+|+.|.++.+
T Consensus 360 ~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 360 RKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp T-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred ccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 01223478899999998877643
No 378
>PRK13616 lipoprotein LpqB; Provisional
Probab=93.48 E-value=3.1 Score=41.76 Aligned_cols=103 Identities=12% Similarity=0.058 Sum_probs=53.6
Q ss_pred eEEEEeCCCCCCeEEEEcCC-CcEEEEecCCCCcce-ecCc--ccc-CCCCCeEEEEecCCCCCEEEEEeCCCcEEE---
Q 018235 232 GYAIDWNPITTGRLVTGDCN-SCIYLWEPASDATWN-VDPN--PFI-GHSASVEDLQWSPTEPDVFASCSVDGHIAI--- 303 (359)
Q Consensus 232 v~~l~~sp~~~~~l~sgs~d-g~I~lwd~~~~~~~~-~~~~--~~~-~h~~~V~~v~~sp~~~~~las~s~Dg~I~i--- 303 (359)
...-.|+|++. .|++.+.. ..+++.+-...++.. .... ... .....|..+.|||+|. .+|... ++.|.+
T Consensus 399 ~t~PsWspDG~-~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~-RiA~i~-~g~v~Va~V 475 (591)
T PRK13616 399 LTRPSWSLDAD-AVWVVVDGNTVVRVIRDPATGQLARTPVDASAVASRVPGPISELQLSRDGV-RAAMII-GGKVYLAVV 475 (591)
T ss_pred CCCceECCCCC-ceEEEecCcceEEEeccCCCceEEEEeccCchhhhccCCCcCeEEECCCCC-EEEEEE-CCEEEEEEE
Confidence 66789999977 66665422 122222211111110 0000 000 2356799999999999 444443 467776
Q ss_pred EECCCCCCce---EEee-cCCCCEEEEEEcCCCCeEEE
Q 018235 304 WDTRVGKSAL---TSFK-AHNADVNVISWNRCWLAVCW 337 (359)
Q Consensus 304 wD~r~~~~~~---~~~~-~h~~~V~~i~~s~~~~~l~~ 337 (359)
-....+...+ ..+. .-...+..+.|..++.+++.
T Consensus 476 vr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~ 513 (591)
T PRK13616 476 EQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVG 513 (591)
T ss_pred EeCCCCceeecccEEeecccCCccccceEecCCEEEEE
Confidence 3333331111 1222 22333688999999986644
No 379
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.14 E-value=6.2 Score=35.36 Aligned_cols=104 Identities=13% Similarity=0.130 Sum_probs=65.0
Q ss_pred CCceeeEEEeCCCCcEEEEEeCCCcE-EEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCC-ceE-EEEeCCCC
Q 018235 165 QGCVNRIRAMTQNPHICASWADTGHV-QVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKD-EGY-AIDWNPIT 241 (359)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V-~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~-~l~~sp~~ 241 (359)
...-..|.++|..+.-++.+-.-|+- .++|.... ..++ ++...+. -.| --.|||++
T Consensus 67 paR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~--------------------~~pv-~~~s~~~RHfyGHGvfs~dG 125 (366)
T COG3490 67 PARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGA--------------------QEPV-TLVSQEGRHFYGHGVFSPDG 125 (366)
T ss_pred ccccCCeecCCCCcceEEEEecCCceEEEECCCCC--------------------cCcE-EEecccCceeecccccCCCC
Confidence 34444678888877777777777764 57888761 2222 2211111 111 12689999
Q ss_pred CCeEEEEcC-----CCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEE
Q 018235 242 TGRLVTGDC-----NSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFAS 294 (359)
Q Consensus 242 ~~~l~sgs~-----dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las 294 (359)
. +|...-+ -|.|-|||.+..-+.+ -.+..|.-.-..+.|.++|. .++.
T Consensus 126 ~-~LYATEndfd~~rGViGvYd~r~~fqrv---gE~~t~GiGpHev~lm~DGr-tlvv 178 (366)
T COG3490 126 R-LLYATENDFDPNRGVIGVYDAREGFQRV---GEFSTHGIGPHEVTLMADGR-TLVV 178 (366)
T ss_pred c-EEEeecCCCCCCCceEEEEeccccccee---cccccCCcCcceeEEecCCc-EEEE
Confidence 8 6655433 3789999998643322 55677777778899999999 4443
No 380
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.12 E-value=1.3 Score=39.55 Aligned_cols=102 Identities=17% Similarity=0.274 Sum_probs=70.1
Q ss_pred ceEEEEeCCCCCCeEEEEcCCCc-EEEEecCCCCccee----cCccccCCCCCeEEEEecCCCCCEEEEEe----CCCcE
Q 018235 231 EGYAIDWNPITTGRLVTGDCNSC-IYLWEPASDATWNV----DPNPFIGHSASVEDLQWSPTEPDVFASCS----VDGHI 301 (359)
Q Consensus 231 ~v~~l~~sp~~~~~l~sgs~dg~-I~lwd~~~~~~~~~----~~~~~~~h~~~V~~v~~sp~~~~~las~s----~Dg~I 301 (359)
.++.|.++|..+.-++.+-.-|+ ..++|......+.+ .-+-|.+|. +|||+|..+.||-. .-|.|
T Consensus 69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~dG~~LYATEndfd~~rGVi 142 (366)
T COG3490 69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSPDGRLLYATENDFDPNRGVI 142 (366)
T ss_pred ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc------ccCCCCcEEEeecCCCCCCCceE
Confidence 44567788777655666666666 46788876433321 124466674 79999994444432 34889
Q ss_pred EEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEE
Q 018235 302 AIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWH 338 (359)
Q Consensus 302 ~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~ 338 (359)
-|||.|.+-+.+-.+..|.-.-..+.|.++|+.++..
T Consensus 143 GvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvva 179 (366)
T COG3490 143 GVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVA 179 (366)
T ss_pred EEEecccccceecccccCCcCcceeEEecCCcEEEEe
Confidence 9999997644566778888778889999999988765
No 381
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=93.03 E-value=4.3 Score=37.16 Aligned_cols=112 Identities=7% Similarity=0.037 Sum_probs=63.5
Q ss_pred cEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCC-CCcceec--CccccCCCCCeEEEEecCCCCCEEEEEeCC
Q 018235 222 LVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPAS-DATWNVD--PNPFIGHSASVEDLQWSPTEPDVFASCSVD 298 (359)
Q Consensus 222 ~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~-~~~~~~~--~~~~~~h~~~V~~v~~sp~~~~~las~s~D 298 (359)
+..+..|-..-++|+|||++..++++=+..+.|+-|++.. .+..... ...+....+..=.++..-+|. +.+++-..
T Consensus 155 ~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~-lw~~a~~~ 233 (307)
T COG3386 155 VRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGN-LWVAAVWG 233 (307)
T ss_pred EEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCC-EEEecccC
Confidence 3344444445568999999983444445557888887752 1111000 011112234444556666676 55444333
Q ss_pred C-cEEEEECCCCCCceEEeecCCCCEEEEEEcC-CCCeEE
Q 018235 299 G-HIAIWDTRVGKSALTSFKAHNADVNVISWNR-CWLAVC 336 (359)
Q Consensus 299 g-~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~-~~~~l~ 336 (359)
| .|.+|+.. + +.+..+......+.+++|-- +...|.
T Consensus 234 g~~v~~~~pd-G-~l~~~i~lP~~~~t~~~FgG~~~~~L~ 271 (307)
T COG3386 234 GGRVVRFNPD-G-KLLGEIKLPVKRPTNPAFGGPDLNTLY 271 (307)
T ss_pred CceEEEECCC-C-cEEEEEECCCCCCccceEeCCCcCEEE
Confidence 3 89999988 5 66666665556678888864 334443
No 382
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.90 E-value=7.9 Score=36.43 Aligned_cols=109 Identities=15% Similarity=0.122 Sum_probs=56.4
Q ss_pred EecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCC----cceecCccccC----CCCCeEEEEecCCCCCEEEEE
Q 018235 224 KFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDA----TWNVDPNPFIG----HSASVEDLQWSPTEPDVFASC 295 (359)
Q Consensus 224 ~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~----~~~~~~~~~~~----h~~~V~~v~~sp~~~~~las~ 295 (359)
.|........+|++.+.+ ++++ +....+++.+....+ +..+....+.. +......++|.|++. +.++.
T Consensus 66 vfa~~l~~p~Gi~~~~~G--lyV~-~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-LYv~~ 141 (367)
T TIGR02604 66 VFAEELSMVTGLAVAVGG--VYVA-TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW-LYFNH 141 (367)
T ss_pred EeecCCCCccceeEecCC--EEEe-CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-EEEec
Confidence 343333345788888776 4554 334333444553211 11110112222 234578899999998 65554
Q ss_pred eCC-------------------CcEEEEECCCCCCceEEe-ecCCCCEEEEEEcCCCCeEEEEe
Q 018235 296 SVD-------------------GHIAIWDTRVGKSALTSF-KAHNADVNVISWNRCWLAVCWHL 339 (359)
Q Consensus 296 s~D-------------------g~I~iwD~r~~~~~~~~~-~~h~~~V~~i~~s~~~~~l~~~~ 339 (359)
+.. |.|.-++.... .+..+ .++ ...+.++|++.|.+++.+.
T Consensus 142 G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~--~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 142 GNTLASKVTRPGTSDESRQGLGGGLFRYNPDGG--KLRVVAHGF-QNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred ccCCCceeccCCCccCcccccCceEEEEecCCC--eEEEEecCc-CCCccceECCCCCEEEEcc
Confidence 421 33444444432 22222 222 2357899999998877654
No 383
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=92.65 E-value=3.7 Score=38.34 Aligned_cols=104 Identities=11% Similarity=0.041 Sum_probs=63.7
Q ss_pred EEEeC-CCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEE-EEecCCCCCEEEEEeCCC----cEEEEECC
Q 018235 234 AIDWN-PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVED-LQWSPTEPDVFASCSVDG----HIAIWDTR 307 (359)
Q Consensus 234 ~l~~s-p~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~-v~~sp~~~~~las~s~Dg----~I~iwD~r 307 (359)
...|. +++..+|.....+|.-+|+-+...+... +.++...-.|.. +.|++.+..++.++..+. .|...++.
T Consensus 239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~---~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~ 315 (353)
T PF00930_consen 239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP---RQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLD 315 (353)
T ss_dssp EEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE---EESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETT
T ss_pred ccccccCCCCEEEEEEEcCCCcEEEEEcccccce---eccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeC
Confidence 44443 6766677777788887777665434333 345555666744 788998886777877633 45555666
Q ss_pred CCCCceEEeecCCCCEEEEEEcCCCCeEEEEeee
Q 018235 308 VGKSALTSFKAHNADVNVISWNRCWLAVCWHLEV 341 (359)
Q Consensus 308 ~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~ 341 (359)
. ...+..+......-..++|+|++++++..+..
T Consensus 316 ~-~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s~ 348 (353)
T PF00930_consen 316 S-GGEPKCLTCEDGDHYSASFSPDGKYYVDTYSG 348 (353)
T ss_dssp E-TTEEEESSTTSSTTEEEEE-TTSSEEEEEEES
T ss_pred C-CCCeEeccCCCCCceEEEECCCCCEEEEEEcC
Confidence 1 14455554333322689999999999877653
No 384
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.55 E-value=3.2 Score=40.08 Aligned_cols=115 Identities=14% Similarity=0.124 Sum_probs=69.3
Q ss_pred CCCcEEecCCCCceEEEEeCCCCC-------CeEEEEcCCCcEEEEecCCCCcceec--CccccCCCCCeEEEEecCCCC
Q 018235 219 QSPLVKFGGHKDEGYAIDWNPITT-------GRLVTGDCNSCIYLWEPASDATWNVD--PNPFIGHSASVEDLQWSPTEP 289 (359)
Q Consensus 219 ~~~~~~~~~h~~~v~~l~~sp~~~-------~~l~sgs~dg~I~lwd~~~~~~~~~~--~~~~~~h~~~V~~v~~sp~~~ 289 (359)
++.+-.+..|..- -+.+.|... +.|+--| +..|.--|+|..+..+.. ...+. .+....+..- ++.
T Consensus 500 GkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS-~~svFrIDPR~~gNKi~v~esKdY~-tKn~Fss~~t--Tes 573 (776)
T COG5167 500 GKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLS-DYSVFRIDPRARGNKIKVVESKDYK-TKNKFSSGMT--TES 573 (776)
T ss_pred ceeeeEeecCCcc--eeecCCchhHHhcCccceEEeec-ccceEEecccccCCceeeeeehhcc-cccccccccc--ccC
Confidence 4555566655543 466666532 2444444 566666688875532211 11111 1122222222 223
Q ss_pred CEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEee
Q 018235 290 DVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLE 340 (359)
Q Consensus 290 ~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~ 340 (359)
.++|.+|..|-||+||--.. .....+.+....|..|....+|.++++.|.
T Consensus 574 GyIa~as~kGDirLyDRig~-rAKtalP~lG~aIk~idvta~Gk~ilaTCk 623 (776)
T COG5167 574 GYIAAASRKGDIRLYDRIGK-RAKTALPGLGDAIKHIDVTANGKHILATCK 623 (776)
T ss_pred ceEEEecCCCceeeehhhcc-hhhhcCcccccceeeeEeecCCcEEEEeec
Confidence 38999999999999995432 333445777888999999999999998885
No 385
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=92.45 E-value=0.43 Score=29.50 Aligned_cols=32 Identities=25% Similarity=0.272 Sum_probs=26.7
Q ss_pred CceeeEEEeCCCC--cEEEEEeCCCcEEEEECCC
Q 018235 166 GCVNRIRAMTQNP--HICASWADTGHVQVWDLRS 197 (359)
Q Consensus 166 ~~V~~i~~~p~~~--~~lat~s~dg~V~iwd~~~ 197 (359)
|.|.+++|+|... .++|-.-..|.|.|+|++.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 6789999998663 5788777889999999985
No 386
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=91.89 E-value=5.8 Score=39.87 Aligned_cols=103 Identities=15% Similarity=0.308 Sum_probs=63.3
Q ss_pred ceEEEEeCCCCCCeEEEEcCCC-cEEEEecCCCCcceecCccccCCCCCeEEEEec--CCCCCEEEEEeCCCcEEEEEC-
Q 018235 231 EGYAIDWNPITTGRLVTGDCNS-CIYLWEPASDATWNVDPNPFIGHSASVEDLQWS--PTEPDVFASCSVDGHIAIWDT- 306 (359)
Q Consensus 231 ~v~~l~~sp~~~~~l~sgs~dg-~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~s--p~~~~~las~s~Dg~I~iwD~- 306 (359)
...-+.-|..+ .++..+.++ .+.|||.+. +.... ...| .....|.++.|. |+++ .+.+.+-.+.|.|+--
T Consensus 31 ~~~li~gss~~--k~a~V~~~~~~LtIWD~~~-~~lE~-~~~f-~~~~~I~dLDWtst~d~q-siLaVGf~~~v~l~~Q~ 104 (631)
T PF12234_consen 31 NPSLISGSSIK--KIAVVDSSRSELTIWDTRS-GVLEY-EESF-SEDDPIRDLDWTSTPDGQ-SILAVGFPHHVLLYTQL 104 (631)
T ss_pred CcceEeecccC--cEEEEECCCCEEEEEEcCC-cEEEE-eeee-cCCCceeeceeeecCCCC-EEEEEEcCcEEEEEEcc
Confidence 34444455544 344444444 689999986 33221 1233 456889999996 5677 6666667777877743
Q ss_pred C----CC-C--CceEEe--ecCC-CCEEEEEEcCCCCeEEEEe
Q 018235 307 R----VG-K--SALTSF--KAHN-ADVNVISWNRCWLAVCWHL 339 (359)
Q Consensus 307 r----~~-~--~~~~~~--~~h~-~~V~~i~~s~~~~~l~~~~ 339 (359)
| .. . .++..+ ..|+ .+|....|-++|.+++...
T Consensus 105 R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG 147 (631)
T PF12234_consen 105 RYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG 147 (631)
T ss_pred chhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC
Confidence 2 11 0 133333 4444 5799999999999887664
No 387
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=91.44 E-value=5.1 Score=40.27 Aligned_cols=117 Identities=15% Similarity=0.302 Sum_probs=67.8
Q ss_pred CceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC--CCCCC
Q 018235 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN--PITTG 243 (359)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s--p~~~~ 243 (359)
.....++-+.-+ .+.+.-+...++.|||..... ...-..| ...+.|..|+|. |++.
T Consensus 30 ~~~~li~gss~~-k~a~V~~~~~~LtIWD~~~~~-------------------lE~~~~f-~~~~~I~dLDWtst~d~q- 87 (631)
T PF12234_consen 30 SNPSLISGSSIK-KIAVVDSSRSELTIWDTRSGV-------------------LEYEESF-SEDDPIRDLDWTSTPDGQ- 87 (631)
T ss_pred CCcceEeecccC-cEEEEECCCCEEEEEEcCCcE-------------------EEEeeee-cCCCceeeceeeecCCCC-
Confidence 455555555555 444445556779999998721 1111233 345689999996 5666
Q ss_pred eEEEEcCCCcEEEEecC-----C-CCccee-cCccccCCC-CCeEEEEecCCCCCEEEEEeCCCcEEEEECC
Q 018235 244 RLVTGDCNSCIYLWEPA-----S-DATWNV-DPNPFIGHS-ASVEDLQWSPTEPDVFASCSVDGHIAIWDTR 307 (359)
Q Consensus 244 ~l~sgs~dg~I~lwd~~-----~-~~~~~~-~~~~~~~h~-~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r 307 (359)
.+++.+..+.|.++-.. . ...|.. ....+..|+ .+|.+..|-++|. +++.+ ...+.|+|-.
T Consensus 88 siLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~-LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 88 SILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGT-LVVGS--GNQLFVFDKW 156 (631)
T ss_pred EEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCe-EEEEe--CCEEEEECCC
Confidence 55666668888887542 1 112221 001133444 6799999999997 33333 2457777643
No 388
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=91.12 E-value=7 Score=36.71 Aligned_cols=150 Identities=12% Similarity=0.146 Sum_probs=68.7
Q ss_pred CCceeeEEEeCCCCcEEEEEeCC---C-cEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCC--ceEEEEeC
Q 018235 165 QGCVNRIRAMTQNPHICASWADT---G-HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKD--EGYAIDWN 238 (359)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~d---g-~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~s 238 (359)
+..++-+.|+|..+.+|+-|-+. . .-+||-++.. +.....+..|.. .+.-=-|.
T Consensus 187 ~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~d--------------------g~~~~~v~~~~~~e~~gHEfw~ 246 (386)
T PF14583_consen 187 TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTD--------------------GSNVKKVHRRMEGESVGHEFWV 246 (386)
T ss_dssp SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETT--------------------S---EESS---TTEEEEEEEE-
T ss_pred CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcC--------------------CCcceeeecCCCCccccccccc
Confidence 34567788999888888876653 2 2377877762 222222223322 22234688
Q ss_pred CCCCCeEEEE----cCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCC---------------
Q 018235 239 PITTGRLVTG----DCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG--------------- 299 (359)
Q Consensus 239 p~~~~~l~sg----s~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg--------------- 299 (359)
|+|..+..-+ +.+..|.-+++.+..... + .......-+.-++++. +|+--+.|.
T Consensus 247 ~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~-----~-~~~p~~~H~~ss~Dg~-L~vGDG~d~p~~v~~~~~~~~~~~ 319 (386)
T PF14583_consen 247 PDGSTIWYDSYTPGGQDFWIAGYDPDTGERRR-----L-MEMPWCSHFMSSPDGK-LFVGDGGDAPVDVADAGGYKIEND 319 (386)
T ss_dssp TTSS-EEEEEEETTT--EEEEEE-TTT--EEE-----E-EEE-SEEEEEE-TTSS-EEEEEE------------------
T ss_pred CCCCEEEEEeecCCCCceEEEeeCCCCCCceE-----E-EeCCceeeeEEcCCCC-EEEecCCCCCccccccccceecCC
Confidence 9987433322 234456667776632211 1 1111222344467887 665544432
Q ss_pred -cEEEEECCCCCCceEEeecCCCC-----------EEEEEEcCCCCeEEEEeeecc
Q 018235 300 -HIAIWDTRVGKSALTSFKAHNAD-----------VNVISWNRCWLAVCWHLEVMM 343 (359)
Q Consensus 300 -~I~iwD~r~~~~~~~~~~~h~~~-----------V~~i~~s~~~~~l~~~~~~~~ 343 (359)
.|+++++..+ . ...+..|... =-..+|+|+++.|++.....+
T Consensus 320 p~i~~~~~~~~-~-~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G 373 (386)
T PF14583_consen 320 PWIYLFDVEAG-R-FRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEG 373 (386)
T ss_dssp -EEEEEETTTT-E-EEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTS
T ss_pred cEEEEeccccC-c-eeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCC
Confidence 5667787764 2 2222223211 134699999999999876533
No 389
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=91.03 E-value=12 Score=34.21 Aligned_cols=141 Identities=12% Similarity=0.016 Sum_probs=73.8
Q ss_pred EEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCC
Q 018235 172 RAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCN 251 (359)
Q Consensus 172 ~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~d 251 (359)
.|.+....++.+--..+.|+-|+... ....++..... +.++..-..+ ++|+++.
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~----------------------g~~~~~~~p~~-~~~~~~~d~~-g~Lv~~~-- 84 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPET----------------------GKKRVFPSPGG-FSSGALIDAG-GRLIACE-- 84 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCc----------------------CceEEEECCCC-cccceeecCC-CeEEEEc--
Confidence 45666655666666778888888764 11223322222 2333332222 2666664
Q ss_pred CcEEEEecCCCCcceecCccccCCC-CCeEEEEecCCCCCEEEEEe-----C-----CCcEEEEECCCCCCceEEeecCC
Q 018235 252 SCIYLWEPASDATWNVDPNPFIGHS-ASVEDLQWSPTEPDVFASCS-----V-----DGHIAIWDTRVGKSALTSFKAHN 320 (359)
Q Consensus 252 g~I~lwd~~~~~~~~~~~~~~~~h~-~~V~~v~~sp~~~~~las~s-----~-----Dg~I~iwD~r~~~~~~~~~~~h~ 320 (359)
.-++++++..+...........+.. ..-+++...|+|..+|-+-+ . -|+|+.+|. .+ ..+..+..+-
T Consensus 85 ~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g-~~~~l~~~~~ 162 (307)
T COG3386 85 HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DG-GVVRLLDDDL 162 (307)
T ss_pred cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CC-CEEEeecCcE
Confidence 3356667654332111112222222 45688999999983343333 1 133444443 22 3344444445
Q ss_pred CCEEEEEEcCCCCeEEEEee
Q 018235 321 ADVNVISWNRCWLAVCWHLE 340 (359)
Q Consensus 321 ~~V~~i~~s~~~~~l~~~~~ 340 (359)
..-|.|+|+|+++.+.+...
T Consensus 163 ~~~NGla~SpDg~tly~aDT 182 (307)
T COG3386 163 TIPNGLAFSPDGKTLYVADT 182 (307)
T ss_pred EecCceEECCCCCEEEEEeC
Confidence 55689999999987766543
No 390
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=90.66 E-value=0.056 Score=51.19 Aligned_cols=140 Identities=17% Similarity=0.196 Sum_probs=94.6
Q ss_pred eEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEc
Q 018235 170 RIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGD 249 (359)
Q Consensus 170 ~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs 249 (359)
..+|.|.+.+ ++.++.+..|..||-..+ .... .........++|...+.-.++.+-
T Consensus 39 ~~~w~~e~~n-lavaca~tiv~~YD~agq----------------------~~le-~n~tg~aldm~wDkegdvlavlAe 94 (615)
T KOG2247|consen 39 IHRWRPEGHN-LAVACANTIVIYYDKAGQ----------------------VILE-LNPTGKALDMAWDKEGDVLAVLAE 94 (615)
T ss_pred eeeEecCCCc-eehhhhhhHHHhhhhhcc----------------------eecc-cCCchhHhhhhhccccchhhhhhh
Confidence 3466777745 555566778888886551 1111 122345567889888775667778
Q ss_pred CCCcEEEEecCCCCcceecCccccC-CCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEE
Q 018235 250 CNSCIYLWEPASDATWNVDPNPFIG-HSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISW 328 (359)
Q Consensus 250 ~dg~I~lwd~~~~~~~~~~~~~~~~-h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~ 328 (359)
..+.+.+||+++..... -.+.+ |+.+. +.|++..+ .++.+-..|.+.|+..++. +.+.....|.-.+.+++|
T Consensus 95 k~~piylwd~n~eytqq---LE~gg~~s~sl--l~wsKg~~-el~ig~~~gn~viynhgts-R~iiv~Gkh~RRgtq~av 167 (615)
T KOG2247|consen 95 KTGPIYLWDVNSEYTQQ---LESGGTSSKSL--LAWSKGTP-ELVIGNNAGNIVIYNHGTS-RRIIVMGKHQRRGTQIAV 167 (615)
T ss_pred cCCCeeechhhhhhHHH---HhccCcchHHH--HhhccCCc-cccccccccceEEEeccch-hhhhhhcccccceeEEEe
Confidence 88999999997632111 11222 22222 78999888 7788888999999999886 444455558889999999
Q ss_pred cCCCCeEEEEee
Q 018235 329 NRCWLAVCWHLE 340 (359)
Q Consensus 329 s~~~~~l~~~~~ 340 (359)
.+.+..+..++.
T Consensus 168 ~lEd~vil~dcd 179 (615)
T KOG2247|consen 168 TLEDYVILCDCD 179 (615)
T ss_pred cccceeeecCcH
Confidence 999887776654
No 391
>PRK13616 lipoprotein LpqB; Provisional
Probab=90.34 E-value=3 Score=41.91 Aligned_cols=99 Identities=8% Similarity=0.044 Sum_probs=55.1
Q ss_pred CceEEEEeCCCCCCeEEEEc------CCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCC-CcEE
Q 018235 230 DEGYAIDWNPITTGRLVTGD------CNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD-GHIA 302 (359)
Q Consensus 230 ~~v~~l~~sp~~~~~l~sgs------~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D-g~I~ 302 (359)
..+.+.+.||++. .++... .|..-.||-...++... ....+. ....-.|+|++. .+++.+.. ..++
T Consensus 350 ~~vsspaiSpdG~-~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~---~lt~g~--~~t~PsWspDG~-~lw~v~dg~~~~~ 422 (591)
T PRK13616 350 GNITSAALSRSGR-QVAAVVTLGRGAPDPASSLWVGPLGGVAV---QVLEGH--SLTRPSWSLDAD-AVWVVVDGNTVVR 422 (591)
T ss_pred cCcccceECCCCC-EEEEEEeecCCCCCcceEEEEEeCCCcce---eeecCC--CCCCceECCCCC-ceEEEecCcceEE
Confidence 3567889999998 544433 24444444332222221 112222 367789999987 55555432 2222
Q ss_pred EE-----------ECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEe
Q 018235 303 IW-----------DTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHL 339 (359)
Q Consensus 303 iw-----------D~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~ 339 (359)
+. ++..+ .... .....|..+.|+|+|..+++-.
T Consensus 423 v~~~~~~gql~~~~vd~g-e~~~---~~~g~Issl~wSpDG~RiA~i~ 466 (591)
T PRK13616 423 VIRDPATGQLARTPVDAS-AVAS---RVPGPISELQLSRDGVRAAMII 466 (591)
T ss_pred EeccCCCceEEEEeccCc-hhhh---ccCCCcCeEEECCCCCEEEEEE
Confidence 32 33322 1111 2345699999999999887754
No 392
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=90.02 E-value=4.6 Score=33.52 Aligned_cols=31 Identities=19% Similarity=0.323 Sum_probs=25.5
Q ss_pred ceEEEEeCCCCC-----CeEEEEcCCCcEEEEecCC
Q 018235 231 EGYAIDWNPITT-----GRLVTGDCNSCIYLWEPAS 261 (359)
Q Consensus 231 ~v~~l~~sp~~~-----~~l~sgs~dg~I~lwd~~~ 261 (359)
.+.+++|||.|- .+|+....+|.|.||....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 678999999653 2789999999999998753
No 393
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=89.96 E-value=3.9 Score=36.86 Aligned_cols=96 Identities=18% Similarity=0.267 Sum_probs=61.5
Q ss_pred CcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEe------CCCcEEEEECCCCCCceEEeec-----CC
Q 018235 252 SCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS------VDGHIAIWDTRVGKSALTSFKA-----HN 320 (359)
Q Consensus 252 g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s------~Dg~I~iwD~r~~~~~~~~~~~-----h~ 320 (359)
..||+||+.. .+|. ..-.+-.+.|++++|.-... ++++|. ....+..||+.+. ....+.. -.
T Consensus 16 ~~lC~yd~~~-~qW~---~~g~~i~G~V~~l~~~~~~~-Llv~G~ft~~~~~~~~la~yd~~~~--~w~~~~~~~s~~ip 88 (281)
T PF12768_consen 16 PGLCLYDTDN-SQWS---SPGNGISGTVTDLQWASNNQ-LLVGGNFTLNGTNSSNLATYDFKNQ--TWSSLGGGSSNSIP 88 (281)
T ss_pred CEEEEEECCC-CEee---cCCCCceEEEEEEEEecCCE-EEEEEeeEECCCCceeEEEEecCCC--eeeecCCcccccCC
Confidence 3689999976 7887 44445667899999986665 888875 4567889998874 2223332 24
Q ss_pred CCEEEEEEcCCC--CeEEEEeeecccceEEEEEeCcC
Q 018235 321 ADVNVISWNRCW--LAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 321 ~~V~~i~~s~~~--~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
++|+.+.+.... .+.+.+.. ......|..||...
T Consensus 89 gpv~a~~~~~~d~~~~~~aG~~-~~g~~~l~~~dGs~ 124 (281)
T PF12768_consen 89 GPVTALTFISNDGSNFWVAGRS-ANGSTFLMKYDGSS 124 (281)
T ss_pred CcEEEEEeeccCCceEEEecee-cCCCceEEEEcCCc
Confidence 678888775433 23333322 33355677777653
No 394
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.76 E-value=2.1 Score=40.68 Aligned_cols=121 Identities=12% Similarity=0.126 Sum_probs=76.9
Q ss_pred CCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCC
Q 018235 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (359)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~ 243 (359)
-.|+|.+|+|++++ .++|.--.+.+|.++++...... .......+.-+..|.+..|+...
T Consensus 65 d~G~I~SIkFSlDn-kilAVQR~~~~v~f~nf~~d~~~-----------------l~~~~~ck~k~~~IlGF~W~~s~-- 124 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDN-KILAVQRTSKTVDFCNFIPDNSQ-----------------LEYTQECKTKNANILGFCWTSST-- 124 (657)
T ss_pred CCCceeEEEeccCc-ceEEEEecCceEEEEecCCCchh-----------------hHHHHHhccCcceeEEEEEecCe--
Confidence 36799999999999 89999999999999998542110 11122233334469999998774
Q ss_pred eEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEe-CCCcEEEEECCC
Q 018235 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS-VDGHIAIWDTRV 308 (359)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s-~Dg~I~iwD~r~ 308 (359)
-+|-.... -+-+|........ .+....|+..|+.-.|+|...-++.+.+ ..+++.=+.+++
T Consensus 125 e~A~i~~~-G~e~y~v~pekrs---lRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~ 186 (657)
T KOG2377|consen 125 EIAFITDQ-GIEFYQVLPEKRS---LRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRA 186 (657)
T ss_pred eEEEEecC-CeEEEEEchhhhh---hhhhhhcccCccEEEEccccceEeeeccccccccccEEEee
Confidence 46666544 4566655432222 2445668889999999998773333333 344444444444
No 395
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=89.03 E-value=0.77 Score=46.93 Aligned_cols=88 Identities=9% Similarity=0.091 Sum_probs=54.7
Q ss_pred CCeEEEEEec-CCCceeeEEEeCCC--CcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCC
Q 018235 154 TPILQLRKVA-HQGCVNRIRAMTQN--PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKD 230 (359)
Q Consensus 154 ~~~~~~~~~~-H~~~V~~i~~~p~~--~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 230 (359)
.+.+..+.+. -...+..|.|+|-- ...+..+-.+|.|++..+..... ..|.+|..
T Consensus 168 q~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~----------------------~l~rsHs~ 225 (1283)
T KOG1916|consen 168 QPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR----------------------SLFRSHSQ 225 (1283)
T ss_pred ccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH----------------------HHHHhcCC
Confidence 4445444433 33566778887743 24566677888998877766322 12223333
Q ss_pred ceEEE-----------EeCCCCCCeEEEEcCCCcEEEEecCCCCc
Q 018235 231 EGYAI-----------DWNPITTGRLVTGDCNSCIYLWEPASDAT 264 (359)
Q Consensus 231 ~v~~l-----------~~sp~~~~~l~sgs~dg~I~lwd~~~~~~ 264 (359)
.+..+ ..||+|. .||.+..||.++.|.+.-.++
T Consensus 226 ~~~d~a~~~~g~~~l~~lSpDGt-v~a~a~~dG~v~f~Qiyi~g~ 269 (1283)
T KOG1916|consen 226 RVTDMAFFAEGVLKLASLSPDGT-VFAWAISDGSVGFYQIYITGK 269 (1283)
T ss_pred CcccHHHHhhchhhheeeCCCCc-EEEEeecCCccceeeeeeecc
Confidence 32222 2689998 999999999999998765443
No 396
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=88.77 E-value=34 Score=35.97 Aligned_cols=179 Identities=14% Similarity=0.183 Sum_probs=112.5
Q ss_pred eeeChhHhhhhhcccccCc-----ceeEEEEeccCCCCcccCCceEEEEEeecCCC-----CCCceEEEEEeeccCCccc
Q 018235 50 LQCDPTAYNSLHAFHIGWP-----CLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEK-----PSWNSIGVFKVSNISGKRR 119 (359)
Q Consensus 50 l~~~~~~Y~~~~~~~~~wP-----~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~-----~~~n~l~i~~~~~l~~~~~ 119 (359)
+++|+..+..+|.|.++-+ +.|+++.-|. ..|+++||---- ...+.|.|+++..+
T Consensus 753 ~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~----------~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~----- 817 (1096)
T KOG1897|consen 753 RVLDQNTFEVLSSHEFERNETALSIISCKFTDDP----------NTYYVVGTGLVYPDENEPVNGRIIVFEFEEL----- 817 (1096)
T ss_pred EEecCCceeEEeeccccccceeeeeeeeeecCCC----------ceEEEEEEEeeccCCCCcccceEEEEEEecC-----
Confidence 5677888888888888754 3455565542 368999997533 34568888988410
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCeEEEEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCc
Q 018235 120 ELVPNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHL 199 (359)
Q Consensus 120 ~~~~~~~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~ 199 (359)
..........-.|.|.++..-. | .++|. -...|++|++..
T Consensus 818 ----------------------------------~~L~~v~e~~v~Gav~aL~~fn-g-kllA~--In~~vrLye~t~-- 857 (1096)
T KOG1897|consen 818 ----------------------------------NSLELVAETVVKGAVYALVEFN-G-KLLAG--INQSVRLYEWTT-- 857 (1096)
T ss_pred ----------------------------------CceeeeeeeeeccceeehhhhC-C-eEEEe--cCcEEEEEEccc--
Confidence 1122233334567787776543 3 46664 347899999987
Q ss_pred cccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCC-CcceecCccccCCCCC
Q 018235 200 NALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASD-ATWNVDPNPFIGHSAS 278 (359)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~-~~~~~~~~~~~~h~~~ 278 (359)
.+.++.-..|...+.+|...-.+. .++.|+--++|.+...+.. +.... ..-.-+...
T Consensus 858 -------------------~~eLr~e~~~~~~~~aL~l~v~gd-eI~VgDlm~Sitll~y~~~eg~f~e--vArD~~p~W 915 (1096)
T KOG1897|consen 858 -------------------ERELRIECNISNPIIALDLQVKGD-EIAVGDLMRSITLLQYKGDEGNFEE--VARDYNPNW 915 (1096)
T ss_pred -------------------cceehhhhcccCCeEEEEEEecCc-EEEEeeccceEEEEEEeccCCceEE--eehhhCccc
Confidence 345566667788899999988887 9999999898887665542 22221 111224455
Q ss_pred eEEEEecCCCCCEEEEEeCCCcEEEEECC
Q 018235 279 VEDLQWSPTEPDVFASCSVDGHIAIWDTR 307 (359)
Q Consensus 279 V~~v~~sp~~~~~las~s~Dg~I~iwD~r 307 (359)
..++.+--.. .++-+-.+|.+.+....
T Consensus 916 mtaveil~~d--~ylgae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 916 MTAVEILDDD--TYLGAENSGNLFTVRKD 942 (1096)
T ss_pred eeeEEEecCc--eEEeecccccEEEEEec
Confidence 5555554333 45555566666665443
No 397
>PRK13684 Ycf48-like protein; Provisional
Probab=88.75 E-value=20 Score=33.25 Aligned_cols=157 Identities=12% Similarity=0.109 Sum_probs=82.7
Q ss_pred CCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCe
Q 018235 165 QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGR 244 (359)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~ 244 (359)
.+.++.+.+.|++ .++++ +..|.+..- ...... ...++ ...-...++++.+.+.++ .
T Consensus 172 ~g~~~~i~~~~~g-~~v~~-g~~G~i~~s-~~~gg~-----------------tW~~~--~~~~~~~l~~i~~~~~g~-~ 228 (334)
T PRK13684 172 AGVVRNLRRSPDG-KYVAV-SSRGNFYST-WEPGQT-----------------AWTPH--QRNSSRRLQSMGFQPDGN-L 228 (334)
T ss_pred cceEEEEEECCCC-eEEEE-eCCceEEEE-cCCCCC-----------------eEEEe--eCCCcccceeeeEcCCCC-E
Confidence 4678888888877 45554 445655421 111000 01111 112234788999999887 5
Q ss_pred EEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEee---cCCC
Q 018235 245 LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK---AHNA 321 (359)
Q Consensus 245 l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~---~h~~ 321 (359)
++.| ..|.+.+=....+..|.....+.......+.++.+.|.+. +++ ++.+|.|.. -...+ +.-..+. .-..
T Consensus 229 ~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~-~~~-~G~~G~v~~-S~d~G-~tW~~~~~~~~~~~ 303 (334)
T PRK13684 229 WMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGE-IWA-GGGNGTLLV-SKDGG-KTWEKDPVGEEVPS 303 (334)
T ss_pred EEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCC-EEE-EcCCCeEEE-eCCCC-CCCeECCcCCCCCc
Confidence 5555 4677654233343445421111111234578899999776 555 555675543 33333 2212221 2223
Q ss_pred CEEEEEEcCCCCeEEEEeeecccceEEEEEeCc
Q 018235 322 DVNVISWNRCWLAVCWHLEVMMEHFLFMILDCS 354 (359)
Q Consensus 322 ~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~ 354 (359)
..+.+.|...+..++.+. .+.|.-++..
T Consensus 304 ~~~~~~~~~~~~~~~~G~-----~G~il~~~~~ 331 (334)
T PRK13684 304 NFYKIVFLDPEKGFVLGQ-----RGVLLRYVGS 331 (334)
T ss_pred ceEEEEEeCCCceEEECC-----CceEEEecCC
Confidence 577888887777776654 3555555543
No 398
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=88.54 E-value=21 Score=33.28 Aligned_cols=106 Identities=8% Similarity=0.001 Sum_probs=59.9
Q ss_pred eEEEe-CCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEE-EEeCCCCCCeEEE
Q 018235 170 RIRAM-TQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYA-IDWNPITTGRLVT 247 (359)
Q Consensus 170 ~i~~~-p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-l~~sp~~~~~l~s 247 (359)
.+.+. +++..++.....+|.-+||-+... ......+....-.|.. +.|++.+..++.+
T Consensus 239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~--------------------~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~ 298 (353)
T PF00930_consen 239 PPHFLGPDGNEFLWISERDGYRHLYLYDLD--------------------GGKPRQLTSGDWEVTSILGWDEDNNRIYFT 298 (353)
T ss_dssp EEEE-TTTSSEEEEEEETTSSEEEEEEETT--------------------SSEEEESS-SSS-EEEEEEEECTSSEEEEE
T ss_pred ccccccCCCCEEEEEEEcCCCcEEEEEccc--------------------ccceeccccCceeecccceEcCCCCEEEEE
Confidence 45554 666566666668888777766652 2223344444446644 6788887755666
Q ss_pred EcCC--CcEEEEecCCC-CcceecCccccCCCCCeEEEEecCCCCCEEEEEeCC
Q 018235 248 GDCN--SCIYLWEPASD-ATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD 298 (359)
Q Consensus 248 gs~d--g~I~lwd~~~~-~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D 298 (359)
|..+ +.-+||-+... +.-. ..++.....-..++|||++..++.+|+.-
T Consensus 299 a~~~~p~~r~lY~v~~~~~~~~---~~LT~~~~~~~~~~~Spdg~y~v~~~s~~ 349 (353)
T PF00930_consen 299 ANGDNPGERHLYRVSLDSGGEP---KCLTCEDGDHYSASFSPDGKYYVDTYSGP 349 (353)
T ss_dssp ESSGGTTSBEEEEEETTETTEE---EESSTTSSTTEEEEE-TTSSEEEEEEESS
T ss_pred ecCCCCCceEEEEEEeCCCCCe---EeccCCCCCceEEEECCCCCEEEEEEcCC
Confidence 6653 35566655443 2222 22332222226899999999777777754
No 399
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=88.51 E-value=16 Score=31.87 Aligned_cols=98 Identities=8% Similarity=0.085 Sum_probs=62.6
Q ss_pred EEEEeCCCCCCeEEEEcCCCcEEEEecCCC-Ccc-----eecCccccCCCCCe-EEEEecCCCCCEEEEEeCCCcEEEEE
Q 018235 233 YAIDWNPITTGRLVTGDCNSCIYLWEPASD-ATW-----NVDPNPFIGHSASV-EDLQWSPTEPDVFASCSVDGHIAIWD 305 (359)
Q Consensus 233 ~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~-~~~-----~~~~~~~~~h~~~V-~~v~~sp~~~~~las~s~Dg~I~iwD 305 (359)
++|+|+.+...+.+.-+.+-.|.-||.... +.. +..++..+...... -.++..-.|. +++++-..++|...|
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~-L~Va~~ng~~V~~~d 239 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGN-LYVATFNGGTVQKVD 239 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCc-EEEEEecCcEEEEEC
Confidence 478998887756666677778877874321 111 11111111111111 1123344565 899999999999999
Q ss_pred CCCCCCceEEeecCCCCEEEEEEcCCC
Q 018235 306 TRVGKSALTSFKAHNADVNVISWNRCW 332 (359)
Q Consensus 306 ~r~~~~~~~~~~~h~~~V~~i~~s~~~ 332 (359)
..++ +.+.++.-....|+|++|--.+
T Consensus 240 p~tG-K~L~eiklPt~qitsccFgGkn 265 (310)
T KOG4499|consen 240 PTTG-KILLEIKLPTPQITSCCFGGKN 265 (310)
T ss_pred CCCC-cEEEEEEcCCCceEEEEecCCC
Confidence 9998 7788887778889999997543
No 400
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.95 E-value=6.8 Score=38.01 Aligned_cols=78 Identities=15% Similarity=0.200 Sum_probs=50.8
Q ss_pred ceEEEEeCCCCCCeEEEEcCCCcEEEEecCCC--------Cccee-------cCccccCC-CCCeEEEEecCCC--CCEE
Q 018235 231 EGYAIDWNPITTGRLVTGDCNSCIYLWEPASD--------ATWNV-------DPNPFIGH-SASVEDLQWSPTE--PDVF 292 (359)
Q Consensus 231 ~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~--------~~~~~-------~~~~~~~h-~~~V~~v~~sp~~--~~~l 292 (359)
+|+.+..|+.|. .++-.+-+|.+.++-++.- ++..+ ..+.|... .-.+..++|||+. ...+
T Consensus 105 eV~~vl~s~~GS-~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 105 EVYQVLLSPTGS-HVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEecCCCc-eEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 788899999998 6666666887665543221 11111 11112221 2346778999987 4577
Q ss_pred EEEeCCCcEEEEECCCC
Q 018235 293 ASCSVDGHIAIWDTRVG 309 (359)
Q Consensus 293 as~s~Dg~I~iwD~r~~ 309 (359)
..-+.|.+|||||+...
T Consensus 184 ~iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEP 200 (741)
T ss_pred EEEecCcEEEEEecCCc
Confidence 77889999999998765
No 401
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=87.69 E-value=20 Score=31.96 Aligned_cols=133 Identities=16% Similarity=0.215 Sum_probs=76.5
Q ss_pred cEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEe
Q 018235 179 HICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWE 258 (359)
Q Consensus 179 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd 258 (359)
-+..|| ..+...+||... .+++.+|.- ..++++|+ .++. .|+..+....|+++|
T Consensus 102 l~qLTW-k~~~~f~yd~~t---------------------l~~~~~~~y-~~EGWGLt--~dg~-~Li~SDGS~~L~~~d 155 (264)
T PF05096_consen 102 LYQLTW-KEGTGFVYDPNT---------------------LKKIGTFPY-PGEGWGLT--SDGK-RLIMSDGSSRLYFLD 155 (264)
T ss_dssp EEEEES-SSSEEEEEETTT---------------------TEEEEEEE--SSS--EEE--ECSS-CEEEE-SSSEEEEE-
T ss_pred EEEEEe-cCCeEEEEcccc---------------------ceEEEEEec-CCcceEEE--cCCC-EEEEECCccceEEEC
Confidence 344454 468899999886 345555643 35899998 3555 666666678899999
Q ss_pred cCCCCcceecCccccC-CCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEee------c------C---CCC
Q 018235 259 PASDATWNVDPNPFIG-HSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK------A------H---NAD 322 (359)
Q Consensus 259 ~~~~~~~~~~~~~~~~-h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~------~------h---~~~ 322 (359)
+.+............+ --..++.+-|- +|. +.|-.-....|...|..++ ..+..+. . + ..-
T Consensus 156 P~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~-IyANVW~td~I~~Idp~tG-~V~~~iDls~L~~~~~~~~~~~~~~dV 232 (264)
T PF05096_consen 156 PETFKEVRTIQVTDNGRPVSNLNELEYI-NGK-IYANVWQTDRIVRIDPETG-KVVGWIDLSGLRPEVGRDKSRQPDDDV 232 (264)
T ss_dssp TTT-SEEEEEE-EETTEE---EEEEEEE-TTE-EEEEETTSSEEEEEETTT--BEEEEEE-HHHHHHHTSTTST--TTS-
T ss_pred CcccceEEEEEEEECCEECCCcEeEEEE-cCE-EEEEeCCCCeEEEEeCCCC-eEEEEEEhhHhhhcccccccccccCCe
Confidence 8763221100001111 12356667775 555 8888877778888898887 4443331 0 1 234
Q ss_pred EEEEEEcCCCCeEEEEee
Q 018235 323 VNVISWNRCWLAVCWHLE 340 (359)
Q Consensus 323 V~~i~~s~~~~~l~~~~~ 340 (359)
.|.|+|+|....+..+..
T Consensus 233 LNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 233 LNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EEEEEEETTTTEEEEEET
T ss_pred eEeEeEeCCCCEEEEEeC
Confidence 799999998876665544
No 402
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=87.58 E-value=12 Score=35.73 Aligned_cols=89 Identities=16% Similarity=0.181 Sum_probs=54.9
Q ss_pred cEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCC-CeEEEEecC--------------
Q 018235 222 LVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSA-SVEDLQWSP-------------- 286 (359)
Q Consensus 222 ~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~-~V~~v~~sp-------------- 286 (359)
.+.|......+.+|..+|.+. +.|+.+.=|+|.|+|+.. +..+ +...|..+ .+.-+.-..
T Consensus 300 r~~l~D~~R~~~~i~~sP~~~-laA~tDslGRV~LiD~~~-~~vv---rmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~ 374 (415)
T PF14655_consen 300 RFGLPDSKREGESICLSPSGR-LAAVTDSLGRVLLIDVAR-GIVV---RMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKS 374 (415)
T ss_pred EEeeccCCceEEEEEECCCCC-EEEEEcCCCcEEEEECCC-Chhh---hhhccCccceEEEEEeecccccccccccccCC
Confidence 445666666899999999987 888888889999999977 3322 33333221 111111100
Q ss_pred --C-CCCEEEEEeCCCcEEEEECCCCCCceEEe
Q 018235 287 --T-EPDVFASCSVDGHIAIWDTRVGKSALTSF 316 (359)
Q Consensus 287 --~-~~~~las~s~Dg~I~iwD~r~~~~~~~~~ 316 (359)
. ...+++-+-.-|.|-||.++.+ ..+..+
T Consensus 375 ~~~~~l~LvIyaprRg~lEvW~~~~g-~Rv~a~ 406 (415)
T PF14655_consen 375 SSRFALFLVIYAPRRGILEVWSMRQG-PRVAAF 406 (415)
T ss_pred CCcceEEEEEEeccCCeEEEEecCCC-CEEEEE
Confidence 0 1113444567888999999987 445444
No 403
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=86.24 E-value=3.1 Score=24.96 Aligned_cols=32 Identities=13% Similarity=0.332 Sum_probs=24.0
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCCCceEEeec
Q 018235 286 PTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA 318 (359)
Q Consensus 286 p~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~ 318 (359)
|++..+++++..+++|.++|..+. ..+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~-~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATN-KVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCC-eEEEEEEC
Confidence 456667888888999999999876 55555543
No 404
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=85.87 E-value=32 Score=32.56 Aligned_cols=63 Identities=10% Similarity=0.223 Sum_probs=38.7
Q ss_pred eEEEEcCCCcEEEEecCCCCc-ceecCccccCCCCCeEE-EEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe
Q 018235 244 RLVTGDCNSCIYLWEPASDAT-WNVDPNPFIGHSASVED-LQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF 316 (359)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~-~~~~~~~~~~h~~~V~~-v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~ 316 (359)
.++.++.+|.++.+|..++.. |. ..+.+ .+.+ ... .+. .++.++.++.|.-+|..++ +.+..+
T Consensus 122 ~v~v~~~~g~l~ald~~tG~~~W~---~~~~~---~~~ssP~v--~~~-~v~v~~~~g~l~ald~~tG-~~~W~~ 186 (394)
T PRK11138 122 KVYIGSEKGQVYALNAEDGEVAWQ---TKVAG---EALSRPVV--SDG-LVLVHTSNGMLQALNESDG-AVKWTV 186 (394)
T ss_pred EEEEEcCCCEEEEEECCCCCCccc---ccCCC---ceecCCEE--ECC-EEEEECCCCEEEEEEccCC-CEeeee
Confidence 677788899999999877432 22 11111 1111 011 123 5566778899999999988 555554
No 405
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=85.55 E-value=35 Score=32.69 Aligned_cols=57 Identities=12% Similarity=0.225 Sum_probs=42.3
Q ss_pred CCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecC-CCCEEEEEEcCCCCe
Q 018235 276 SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAH-NADVNVISWNRCWLA 334 (359)
Q Consensus 276 ~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h-~~~V~~i~~s~~~~~ 334 (359)
.+++..++.||+++ .+|.-..+|.+.|....-. +.+..+... ......+.|.-++..
T Consensus 216 ~~~i~~iavSpng~-~iAl~t~~g~l~v~ssDf~-~~~~e~~~~~~~~p~~~~WCG~dav 273 (410)
T PF04841_consen 216 DGPIIKIAVSPNGK-FIALFTDSGNLWVVSSDFS-EKLCEFDTDSKSPPKQMAWCGNDAV 273 (410)
T ss_pred CCCeEEEEECCCCC-EEEEEECCCCEEEEECccc-ceeEEeecCcCCCCcEEEEECCCcE
Confidence 35799999999999 8899999999999876654 555555333 345677888876553
No 406
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=85.52 E-value=35 Score=32.68 Aligned_cols=39 Identities=10% Similarity=0.154 Sum_probs=28.6
Q ss_pred CCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecC
Q 018235 220 SPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPA 260 (359)
Q Consensus 220 ~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~ 260 (359)
+++.++.-..+.+.++.|+... .|+....||.++++|+.
T Consensus 71 ~ll~~i~w~~~~iv~~~wt~~e--~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 71 KLLSSIPWDSGRIVGMGWTDDE--ELVVVQSDGTVRVYDLF 109 (410)
T ss_pred CEeEEEEECCCCEEEEEECCCC--eEEEEEcCCEEEEEeCC
Confidence 4455444444789999998854 56677789999999984
No 407
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=84.91 E-value=27 Score=30.90 Aligned_cols=101 Identities=12% Similarity=0.138 Sum_probs=62.0
Q ss_pred ceEEEEeCCCCCCeEEEEc---CCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEE-C
Q 018235 231 EGYAIDWNPITTGRLVTGD---CNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWD-T 306 (359)
Q Consensus 231 ~v~~l~~sp~~~~~l~sgs---~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD-~ 306 (359)
.+.+.++++++. .++... ....++++... +... ..+.+ ..+..-+|++++. +.+....+...+++. .
T Consensus 25 ~~~s~AvS~dg~-~~A~v~~~~~~~~L~~~~~~--~~~~---~~~~g--~~l~~PS~d~~g~-~W~v~~~~~~~~~~~~~ 95 (253)
T PF10647_consen 25 DVTSPAVSPDGS-RVAAVSEGDGGRSLYVGPAG--GPVR---PVLTG--GSLTRPSWDPDGW-VWTVDDGSGGVRVVRDS 95 (253)
T ss_pred cccceEECCCCC-eEEEEEEcCCCCEEEEEcCC--Ccce---eeccC--CccccccccCCCC-EEEEEcCCCceEEEEec
Confidence 677899999998 555443 33345555443 2222 11222 3677789999977 777767677777774 3
Q ss_pred CCCCCceEEeecC--CCCEEEEEEcCCCCeEEEEee
Q 018235 307 RVGKSALTSFKAH--NADVNVISWNRCWLAVCWHLE 340 (359)
Q Consensus 307 r~~~~~~~~~~~h--~~~V~~i~~s~~~~~l~~~~~ 340 (359)
..+......+... ...|..+.++|+|..++.-..
T Consensus 96 ~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~ 131 (253)
T PF10647_consen 96 ASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVE 131 (253)
T ss_pred CCCcceeEEecccccCCceEEEEECCCCcEEEEEEe
Confidence 3332222233222 227999999999998876653
No 408
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=84.35 E-value=38 Score=32.07 Aligned_cols=69 Identities=12% Similarity=0.107 Sum_probs=41.3
Q ss_pred eEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecC
Q 018235 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAH 319 (359)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h 319 (359)
.|+.++.+|.+..+|..++ +.+-....+. +. ....... .+. .+..++.+|.|.++|..++ +.+......
T Consensus 296 ~vy~~~~~g~l~ald~~tG-~~~W~~~~~~-~~-~~~sp~v--~~g-~l~v~~~~G~l~~ld~~tG-~~~~~~~~~ 364 (394)
T PRK11138 296 RIYLVDQNDRVYALDTRGG-VELWSQSDLL-HR-LLTAPVL--YNG-YLVVGDSEGYLHWINREDG-RFVAQQKVD 364 (394)
T ss_pred EEEEEcCCCeEEEEECCCC-cEEEcccccC-CC-cccCCEE--ECC-EEEEEeCCCEEEEEECCCC-CEEEEEEcC
Confidence 7777888999999998773 3221011111 11 1111111 133 6778899999999999998 655555433
No 409
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=83.49 E-value=57 Score=33.49 Aligned_cols=123 Identities=14% Similarity=0.094 Sum_probs=69.2
Q ss_pred eEEEEeCCCC-CCeEEEEcCCCcEEEEecCCC------C-------cceecCccc--cCCCCCeEEEEec--CCCCCEEE
Q 018235 232 GYAIDWNPIT-TGRLVTGDCNSCIYLWEPASD------A-------TWNVDPNPF--IGHSASVEDLQWS--PTEPDVFA 293 (359)
Q Consensus 232 v~~l~~sp~~-~~~l~sgs~dg~I~lwd~~~~------~-------~~~~~~~~~--~~h~~~V~~v~~s--p~~~~~la 293 (359)
|+.|.....+ ...|+.|..||.|.+|-+..- . .......++ ..-..+++.++++ .... +||
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~r-lIA 181 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSR-LIA 181 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcce-EEE
Confidence 5555444332 227888999999999965210 0 000001121 1234688999998 6665 888
Q ss_pred EEeCCCcEEEEECCCCCC--ceEEeecCCCCEEEEEEcCCC---C---eEEEEeeecccceEEEE-EeCcCC
Q 018235 294 SCSVDGHIAIWDTRVGKS--ALTSFKAHNADVNVISWNRCW---L---AVCWHLEVMMEHFLFMI-LDCSRG 356 (359)
Q Consensus 294 s~s~Dg~I~iwD~r~~~~--~~~~~~~h~~~V~~i~~s~~~---~---~l~~~~~~~~~d~~i~i-wd~~~g 356 (359)
.++....|.||-+..... ....-..|..-|-+|+|-++. . .+++. .-.++-.++++ |....+
T Consensus 182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~-dI~G~v~~~~I~~~~~~g 252 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVAT-DISGEVWTFKIKFKEGRG 252 (717)
T ss_pred EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEE-eccCcEEEEEEEEeeccC
Confidence 888888899986655211 111111255668899998754 1 33333 23233445556 555555
No 410
>PRK10115 protease 2; Provisional
Probab=83.22 E-value=60 Score=33.50 Aligned_cols=117 Identities=6% Similarity=0.001 Sum_probs=61.1
Q ss_pred CceeeEEEeCCCCcEEEEEeCC----CcEEEEECCCCccccccccccccCCCCCCCCCCCcE-EecCCCCceEEEEeCCC
Q 018235 166 GCVNRIRAMTQNPHICASWADT----GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLV-KFGGHKDEGYAIDWNPI 240 (359)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~d----g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~sp~ 240 (359)
-.+..+.++|++..++.+...+ ..|++.|+.+ +..+. .+.+ . -..++|+++
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~t---------------------g~~l~~~i~~-~--~~~~~w~~D 182 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLET---------------------GNWYPELLDN-V--EPSFVWAND 182 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCC---------------------CCCCCccccC-c--ceEEEEeeC
Confidence 3466788999995444443333 3577777765 22111 1111 1 156999999
Q ss_pred CCCeEEEEcCC-----CcEEEEecCCCCcceecCccccCCCCCeE-EEEecCCCCCEEEEEe--CCCcEEEEECCC
Q 018235 241 TTGRLVTGDCN-----SCIYLWEPASDATWNVDPNPFIGHSASVE-DLQWSPTEPDVFASCS--VDGHIAIWDTRV 308 (359)
Q Consensus 241 ~~~~l~sgs~d-----g~I~lwd~~~~~~~~~~~~~~~~h~~~V~-~v~~sp~~~~~las~s--~Dg~I~iwD~r~ 308 (359)
+.+++++...+ ..|+++++.++..-. ...+........ .+..+.++..+++.++ .++.+.+++...
T Consensus 183 ~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d--~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~ 256 (686)
T PRK10115 183 SWTFYYVRKHPVTLLPYQVWRHTIGTPASQD--ELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAEL 256 (686)
T ss_pred CCEEEEEEecCCCCCCCEEEEEECCCChhHC--eEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcC
Confidence 98666665432 357777776631111 112332222232 2233336664554443 346788888543
No 411
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=81.73 E-value=17 Score=34.75 Aligned_cols=38 Identities=13% Similarity=0.062 Sum_probs=32.1
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCC
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRS 197 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~ 197 (359)
..+......+.+|..+|.+ .++|+...-|.|.++|+..
T Consensus 301 ~~l~D~~R~~~~i~~sP~~-~laA~tDslGRV~LiD~~~ 338 (415)
T PF14655_consen 301 FGLPDSKREGESICLSPSG-RLAAVTDSLGRVLLIDVAR 338 (415)
T ss_pred EeeccCCceEEEEEECCCC-CEEEEEcCCCcEEEEECCC
Confidence 5556677789999999998 7888877779999999987
No 412
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=81.72 E-value=8.2 Score=38.46 Aligned_cols=39 Identities=21% Similarity=0.381 Sum_probs=26.8
Q ss_pred CCeEEEEecC---CCCCEEEEEeCCCcEEEEECCCCCCceEEe
Q 018235 277 ASVEDLQWSP---TEPDVFASCSVDGHIAIWDTRVGKSALTSF 316 (359)
Q Consensus 277 ~~V~~v~~sp---~~~~~las~s~Dg~I~iwD~r~~~~~~~~~ 316 (359)
..+.+++.++ .+..++++.+.|+.|||||+.++ .++.+.
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~-~~~~~~ 256 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETG-QCLATI 256 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTT-CEEEEE
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCC-eEEEEe
Confidence 4456667766 24449999999999999999998 554443
No 413
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=81.35 E-value=27 Score=34.07 Aligned_cols=62 Identities=11% Similarity=0.288 Sum_probs=45.5
Q ss_pred CCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCC
Q 018235 241 TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV 308 (359)
Q Consensus 241 ~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~ 308 (359)
..|++|.|+..|-|++||--. -.. ...+.+-...|--|..+.+|.++||||- ..|-+-|++-
T Consensus 572 esGyIa~as~kGDirLyDRig-~rA---KtalP~lG~aIk~idvta~Gk~ilaTCk--~yllL~d~~i 633 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIG-KRA---KTALPGLGDAIKHIDVTANGKHILATCK--NYLLLTDVPI 633 (776)
T ss_pred cCceEEEecCCCceeeehhhc-chh---hhcCcccccceeeeEeecCCcEEEEeec--ceEEEEeccc
Confidence 346999999999999998532 111 1345666778888999999998888884 4666777653
No 414
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=80.72 E-value=66 Score=34.79 Aligned_cols=122 Identities=12% Similarity=0.061 Sum_probs=70.6
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
.-....+|+|.+++-.. | .++++ ..-.|.||++.... ...++. | -.-++|-.+..
T Consensus 1091 l~~eE~KGtVsavceV~-G--~l~~~-~GqKI~v~~l~r~~------------------~ligVa-F--iD~~~yv~s~~ 1145 (1366)
T KOG1896|consen 1091 LYIEEQKGTVSAVCEVR-G--HLLSS-QGQKIIVRKLDRDS------------------ELIGVA-F--IDLPLYVHSMK 1145 (1366)
T ss_pred eehhhcccceEEEEEec-c--EEEEc-cCcEEEEEEeccCC------------------cceeeE-E--eccceeEEehh
Confidence 33345678998876543 4 34442 34679999995411 012222 2 12355566666
Q ss_pred CCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCC-EEEEEeCCCcEEEEECC
Q 018235 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPD-VFASCSVDGHIAIWDTR 307 (359)
Q Consensus 239 p~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~-~las~s~Dg~I~iwD~r 307 (359)
...+ +|+.|+--..|.+.-.......+. ...-....-.|.++.|--+|.+ .|+.+..++.|+++-..
T Consensus 1146 ~vkn-lIl~gDV~ksisfl~fqeep~rls-L~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1146 VVKN-LILAGDVMKSISFLGFQEEPYRLS-LLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYA 1213 (1366)
T ss_pred hhhh-heehhhhhhceEEEEEccCceEEE-EeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeC
Confidence 6666 888888888888776654222110 0000112235677777767665 47778889999998543
No 415
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.56 E-value=38 Score=30.64 Aligned_cols=109 Identities=11% Similarity=0.139 Sum_probs=68.4
Q ss_pred CCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEEC
Q 018235 227 GHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDT 306 (359)
Q Consensus 227 ~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~ 306 (359)
|-...+.+|.|+|+.+ .|++......-.+|=... +..+. ..++.+ -+..+.|.|.-.+. +.++--.++.+.++.+
T Consensus 83 g~~~nvS~LTynp~~r-tLFav~n~p~~iVElt~~-Gdlir-tiPL~g-~~DpE~Ieyig~n~-fvi~dER~~~l~~~~v 157 (316)
T COG3204 83 GETANVSSLTYNPDTR-TLFAVTNKPAAIVELTKE-GDLIR-TIPLTG-FSDPETIEYIGGNQ-FVIVDERDRALYLFTV 157 (316)
T ss_pred cccccccceeeCCCcc-eEEEecCCCceEEEEecC-CceEE-Eecccc-cCChhHeEEecCCE-EEEEehhcceEEEEEE
Confidence 4445689999999998 666665566655654434 55442 234554 23456677877776 5555567888888877
Q ss_pred CCCCC------ceEEe--ecC-CCCEEEEEEcCCCCeEEEEee
Q 018235 307 RVGKS------ALTSF--KAH-NADVNVISWNRCWLAVCWHLE 340 (359)
Q Consensus 307 r~~~~------~~~~~--~~h-~~~V~~i~~s~~~~~l~~~~~ 340 (359)
..... ....+ ..+ +...-.++|.|.+..+.+.-.
T Consensus 158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKE 200 (316)
T COG3204 158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKE 200 (316)
T ss_pred cCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEc
Confidence 65411 11122 122 667788999999887776643
No 416
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=80.52 E-value=35 Score=29.90 Aligned_cols=110 Identities=9% Similarity=0.074 Sum_probs=63.8
Q ss_pred ceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCC------CCceEEEEeCCC
Q 018235 167 CVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGH------KDEGYAIDWNPI 240 (359)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h------~~~v~~l~~sp~ 240 (359)
--|.++|..+...+..+-+.+-.|.-||...+...+. ..+.++.+... ...+.++ .-.
T Consensus 159 IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~s--------------nr~~i~dlrk~~~~e~~~PDGm~I--D~e 222 (310)
T KOG4499|consen 159 ISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLS--------------NRKVIFDLRKSQPFESLEPDGMTI--DTE 222 (310)
T ss_pred CCccccccccCcEEEEEccCceEEeeeecCCCccccc--------------CcceeEEeccCCCcCCCCCCcceE--ccC
Confidence 3466777766656666777778888888655221111 12222222221 1123344 335
Q ss_pred CCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEE-EEEeC
Q 018235 241 TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVF-ASCSV 297 (359)
Q Consensus 241 ~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~l-as~s~ 297 (359)
|. +++++-..++|...|+.+ ++.+ ..+.-.+..|++++|--.+-.+| +|+..
T Consensus 223 G~-L~Va~~ng~~V~~~dp~t-GK~L---~eiklPt~qitsccFgGkn~d~~yvT~aa 275 (310)
T KOG4499|consen 223 GN-LYVATFNGGTVQKVDPTT-GKIL---LEIKLPTPQITSCCFGGKNLDILYVTTAA 275 (310)
T ss_pred Cc-EEEEEecCcEEEEECCCC-CcEE---EEEEcCCCceEEEEecCCCccEEEEEehh
Confidence 55 677777788999999988 5655 34444578899999964432344 44443
No 417
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=80.19 E-value=5.7 Score=23.51 Aligned_cols=30 Identities=17% Similarity=0.435 Sum_probs=21.1
Q ss_pred CCCCeEEEEecCCCCCEEEEEeCC--CcEEEE
Q 018235 275 HSASVEDLQWSPTEPDVFASCSVD--GHIAIW 304 (359)
Q Consensus 275 h~~~V~~v~~sp~~~~~las~s~D--g~I~iw 304 (359)
....-....|||+|+.++.+...+ |...||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 445667889999999666666666 776666
No 418
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=79.70 E-value=14 Score=32.07 Aligned_cols=75 Identities=17% Similarity=0.269 Sum_probs=47.5
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEe-----cCCCCceEEEEeCCCCCCeEEEEcC
Q 018235 176 QNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF-----GGHKDEGYAIDWNPITTGRLVTGDC 250 (359)
Q Consensus 176 ~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~h~~~v~~l~~sp~~~~~l~sgs~ 250 (359)
.+ .++++-+.+|.+++||+......+.... ..|+... ......|..+..+..|. -|++-+
T Consensus 21 ~~-~~Ll~iT~~G~l~vWnl~~~k~~~~~~S------------i~pll~~~~~~~~~~~~~i~~~~lt~~G~-PiV~ls- 85 (219)
T PF07569_consen 21 NG-SYLLAITSSGLLYVWNLKKGKAVLPPVS------------IAPLLNSSPVSDKSSSPNITSCSLTSNGV-PIVTLS- 85 (219)
T ss_pred CC-CEEEEEeCCCeEEEEECCCCeeccCCcc------------HHHHhcccccccCCCCCcEEEEEEcCCCC-EEEEEe-
Confidence 44 5677778999999999988433222111 0111100 03455788888887776 566655
Q ss_pred CCcEEEEecCCCCcce
Q 018235 251 NSCIYLWEPASDATWN 266 (359)
Q Consensus 251 dg~I~lwd~~~~~~~~ 266 (359)
+|..+.|+..- +.|.
T Consensus 86 ng~~y~y~~~L-~~W~ 100 (219)
T PF07569_consen 86 NGDSYSYSPDL-GCWI 100 (219)
T ss_pred CCCEEEecccc-ceeE
Confidence 68899999865 6665
No 419
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=79.23 E-value=15 Score=31.73 Aligned_cols=66 Identities=14% Similarity=0.306 Sum_probs=45.7
Q ss_pred CCCCeEEEEcCCCcEEEEecCCCCcceecC---cccc--------CCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCC
Q 018235 240 ITTGRLVTGDCNSCIYLWEPASDATWNVDP---NPFI--------GHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV 308 (359)
Q Consensus 240 ~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~---~~~~--------~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~ 308 (359)
.+. +|+....+|.+++||+.+. +..... .++. .....|..+..+.+|. .+++-+ +|....|+...
T Consensus 21 ~~~-~Ll~iT~~G~l~vWnl~~~-k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~-PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 21 NGS-YLLAITSSGLLYVWNLKKG-KAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGV-PIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred CCC-EEEEEeCCCeEEEEECCCC-eeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCC-EEEEEe-CCCEEEecccc
Confidence 455 7888899999999999873 322111 1222 3557788889998887 555554 57889998776
Q ss_pred C
Q 018235 309 G 309 (359)
Q Consensus 309 ~ 309 (359)
+
T Consensus 97 ~ 97 (219)
T PF07569_consen 97 G 97 (219)
T ss_pred c
Confidence 4
No 420
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.92 E-value=50 Score=29.88 Aligned_cols=153 Identities=13% Similarity=0.163 Sum_probs=86.6
Q ss_pred cCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEe--cCCCCceEEEEeCCC
Q 018235 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF--GGHKDEGYAIDWNPI 240 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~sp~ 240 (359)
+-...|.++.|+|+...++++....-.|.-.+.+. ..+.++ .+-. .-.+|.|.-.
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~G----------------------dlirtiPL~g~~-DpE~Ieyig~ 139 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEG----------------------DLIRTIPLTGFS-DPETIEYIGG 139 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCC----------------------ceEEEecccccC-ChhHeEEecC
Confidence 55566999999999966777655444443333332 333222 2211 2236777766
Q ss_pred CCCeEEEEcCCCcEEEEecCCCCcce------ecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceE
Q 018235 241 TTGRLVTGDCNSCIYLWEPASDATWN------VDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALT 314 (359)
Q Consensus 241 ~~~~l~sgs~dg~I~lwd~~~~~~~~------~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~ 314 (359)
+. +.++--.++.+.++.+......+ ++...........+.++|.|... .|..+=.-.-+.||-+......+.
T Consensus 140 n~-fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~-~l~~aKEr~P~~I~~~~~~~~~l~ 217 (316)
T COG3204 140 NQ-FVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDH-RLFVAKERNPIGIFEVTQSPSSLS 217 (316)
T ss_pred CE-EEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCc-eEEEEEccCCcEEEEEecCCcccc
Confidence 65 66666667788887765532211 11122222256789999999988 666666667788877665421111
Q ss_pred --EeecC-------CCCEEEEEEcCC-CCeEEEEee
Q 018235 315 --SFKAH-------NADVNVISWNRC-WLAVCWHLE 340 (359)
Q Consensus 315 --~~~~h-------~~~V~~i~~s~~-~~~l~~~~~ 340 (359)
....+ -.+|.++.|++. +.+++.+..
T Consensus 218 ~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~E 253 (316)
T COG3204 218 VHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDE 253 (316)
T ss_pred cccccCcccccceEeeccccceecCCCCcEEEEecC
Confidence 11111 235778888864 344444433
No 421
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=78.89 E-value=44 Score=29.73 Aligned_cols=104 Identities=13% Similarity=0.032 Sum_probs=60.3
Q ss_pred CCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecC
Q 018235 240 ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAH 319 (359)
Q Consensus 240 ~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h 319 (359)
+...+++.|+..+.+..-|..+ ++.. ....-+ ..+++-+.- -+. +++.|+..|.+++.+..++ .....+...
T Consensus 21 dskT~v~igSHs~~~~avd~~s-G~~~--We~ilg--~RiE~sa~v-vgd-fVV~GCy~g~lYfl~~~tG-s~~w~f~~~ 92 (354)
T KOG4649|consen 21 DSKTLVVIGSHSGIVIAVDPQS-GNLI--WEAILG--VRIECSAIV-VGD-FVVLGCYSGGLYFLCVKTG-SQIWNFVIL 92 (354)
T ss_pred CCceEEEEecCCceEEEecCCC-CcEE--eehhhC--ceeeeeeEE-ECC-EEEEEEccCcEEEEEecch-hheeeeeeh
Confidence 3344788888888888888877 4322 122222 233332222 345 7888999999999999998 555554332
Q ss_pred CCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 320 NADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 320 ~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
..-=......+++.++..+.. |+.+...|.++
T Consensus 93 ~~vk~~a~~d~~~glIycgsh----d~~~yalD~~~ 124 (354)
T KOG4649|consen 93 ETVKVRAQCDFDGGLIYCGSH----DGNFYALDPKT 124 (354)
T ss_pred hhhccceEEcCCCceEEEecC----CCcEEEecccc
Confidence 221112233555665555544 56666666554
No 422
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=78.07 E-value=11 Score=22.19 Aligned_cols=34 Identities=9% Similarity=0.039 Sum_probs=24.5
Q ss_pred EEecCCCceeeEEEeCCCCcEEEEEeCC--CcEEEE
Q 018235 160 RKVAHQGCVNRIRAMTQNPHICASWADT--GHVQVW 193 (359)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat~s~d--g~V~iw 193 (359)
++....+.-....|+|+|..++.++... |.-.||
T Consensus 3 ~~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 3 QLTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp EES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CcccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3445566778889999998888887777 777776
No 423
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=77.51 E-value=44 Score=30.90 Aligned_cols=26 Identities=12% Similarity=0.225 Sum_probs=20.8
Q ss_pred eeeEEEeCCCCcEEEEEeCCCcEEEEEC
Q 018235 168 VNRIRAMTQNPHICASWADTGHVQVWDL 195 (359)
Q Consensus 168 V~~i~~~p~~~~~lat~s~dg~V~iwd~ 195 (359)
-+.|+|.|++ .++++ -..|.|++++.
T Consensus 4 P~~~a~~pdG-~l~v~-e~~G~i~~~~~ 29 (331)
T PF07995_consen 4 PRSMAFLPDG-RLLVA-ERSGRIWVVDK 29 (331)
T ss_dssp EEEEEEETTS-CEEEE-ETTTEEEEEET
T ss_pred ceEEEEeCCC-cEEEE-eCCceEEEEeC
Confidence 3678999998 67766 55999999993
No 424
>PHA02713 hypothetical protein; Provisional
Probab=77.03 E-value=84 Score=31.47 Aligned_cols=95 Identities=9% Similarity=0.117 Sum_probs=44.1
Q ss_pred cEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCC------CcEEEEECCC-CCC-ceEEeecCCCCEE
Q 018235 253 CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD------GHIAIWDTRV-GKS-ALTSFKAHNADVN 324 (359)
Q Consensus 253 ~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D------g~I~iwD~r~-~~~-~~~~~~~h~~~V~ 324 (359)
.+..||+.+ .+|... .++.........+.+ ++. +.+.|+.+ ..+..||..+ ..- .+..+........
T Consensus 433 ~ve~YDP~t-d~W~~v-~~m~~~r~~~~~~~~--~~~-IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~ 507 (557)
T PHA02713 433 KVIRYDTVN-NIWETL-PNFWTGTIRPGVVSH--KDD-IYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALH 507 (557)
T ss_pred eEEEECCCC-CeEeec-CCCCcccccCcEEEE--CCE-EEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccce
Confidence 477899877 666521 222111111112222 355 77777754 2466788886 311 1222222222222
Q ss_pred EEEEcCCCCeEEEEeeecccceEEEEEeCcCC
Q 018235 325 VISWNRCWLAVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 325 ~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
.+.+ ++.+.+.+...+ ...+..+|+.++
T Consensus 508 ~~~~--~~~iyv~Gg~~~--~~~~e~yd~~~~ 535 (557)
T PHA02713 508 TILH--DNTIMMLHCYES--YMLQDTFNVYTY 535 (557)
T ss_pred eEEE--CCEEEEEeeecc--eeehhhcCcccc
Confidence 2222 466666554321 125666666654
No 425
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=76.60 E-value=22 Score=32.92 Aligned_cols=54 Identities=9% Similarity=0.190 Sum_probs=36.1
Q ss_pred EEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEEeCcCCcc
Q 018235 301 IAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMILDCSRGEI 358 (359)
Q Consensus 301 I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~v 358 (359)
|-++|+.++ +.+.++.. ..++.+|..+.+.+-++++... .++.|.++|..+|+.
T Consensus 271 VWv~D~~t~-krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~--~~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 271 VWVYDLKTH-KRVARIPL-EHPIDSIAVSQDDKPLLYALSA--GDGTLDVYDAATGKL 324 (342)
T ss_dssp EEEEETTTT-EEEEEEEE-EEEESEEEEESSSS-EEEEEET--TTTEEEEEETTT--E
T ss_pred EEEEECCCC-eEEEEEeC-CCccceEEEccCCCcEEEEEcC--CCCeEEEEeCcCCcE
Confidence 666688886 66666642 2357899999988766655431 267899999999874
No 426
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=74.79 E-value=68 Score=29.31 Aligned_cols=106 Identities=11% Similarity=0.148 Sum_probs=54.6
Q ss_pred CCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEEC
Q 018235 227 GHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDT 306 (359)
Q Consensus 227 ~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~ 306 (359)
.-...+.++.-++++. +++.++.-....-|+.-. ..|. .....-...|..+.|.|++. +.+ ....|.|++=+.
T Consensus 142 ~~~gs~~~~~r~~dG~-~vavs~~G~~~~s~~~G~-~~w~---~~~r~~~~riq~~gf~~~~~-lw~-~~~Gg~~~~s~~ 214 (302)
T PF14870_consen 142 ETSGSINDITRSSDGR-YVAVSSRGNFYSSWDPGQ-TTWQ---PHNRNSSRRIQSMGFSPDGN-LWM-LARGGQIQFSDD 214 (302)
T ss_dssp S----EEEEEE-TTS--EEEEETTSSEEEEE-TT--SS-E---EEE--SSS-EEEEEE-TTS--EEE-EETTTEEEEEE-
T ss_pred CCcceeEeEEECCCCc-EEEEECcccEEEEecCCC-ccce---EEccCccceehhceecCCCC-EEE-EeCCcEEEEccC
Confidence 3345788888899987 777776444556777643 3343 11222457899999999987 555 348888888772
Q ss_pred CCC----CCceEEeecCCCCEEEEEEcCCCCeEEEEe
Q 018235 307 RVG----KSALTSFKAHNADVNVISWNRCWLAVCWHL 339 (359)
Q Consensus 307 r~~----~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~ 339 (359)
... .+++..+..-.-.+..++|.+.+.+.+.+.
T Consensus 215 ~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg 251 (302)
T PF14870_consen 215 PDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG 251 (302)
T ss_dssp TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES
T ss_pred CCCccccccccCCcccCceeeEEEEecCCCCEEEEeC
Confidence 221 011111112233478899999888776554
No 427
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=74.61 E-value=0.66 Score=44.26 Aligned_cols=109 Identities=17% Similarity=0.310 Sum_probs=75.8
Q ss_pred cCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecC-CCCceEEEEeCCCC
Q 018235 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGG-HKDEGYAIDWNPIT 241 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~sp~~ 241 (359)
.-++..-.++|..+++..++.+-..+.+.+||+.+.- ... ..+.+ |+.+ -+.|++..
T Consensus 72 n~tg~aldm~wDkegdvlavlAek~~piylwd~n~ey-------------------tqq-LE~gg~~s~s--ll~wsKg~ 129 (615)
T KOG2247|consen 72 NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEY-------------------TQQ-LESGGTSSKS--LLAWSKGT 129 (615)
T ss_pred CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhh-------------------HHH-HhccCcchHH--HHhhccCC
Confidence 3466777788888887667777788999999998721 111 11212 2222 27899988
Q ss_pred CCeEEEEcCCCcEEEEecCCCCcceecCccccC-CCCCeEEEEecCCCCCEEEEEeCCCcE
Q 018235 242 TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIG-HSASVEDLQWSPTEPDVFASCSVDGHI 301 (359)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~-h~~~V~~v~~sp~~~~~las~s~Dg~I 301 (359)
+ .++.|-..|.+.|++...... ....| |...+.+++|.+.+. .+.|+.|..+
T Consensus 130 ~-el~ig~~~gn~viynhgtsR~-----iiv~Gkh~RRgtq~av~lEd~--vil~dcd~~L 182 (615)
T KOG2247|consen 130 P-ELVIGNNAGNIVIYNHGTSRR-----IIVMGKHQRRGTQIAVTLEDY--VILCDCDNTL 182 (615)
T ss_pred c-cccccccccceEEEeccchhh-----hhhhcccccceeEEEecccce--eeecCcHHHH
Confidence 8 888898999999999876332 22345 999999999998874 5566655443
No 428
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=74.42 E-value=21 Score=36.90 Aligned_cols=95 Identities=14% Similarity=0.146 Sum_probs=53.9
Q ss_pred cCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCc---cccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCC
Q 018235 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHL---NALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp 239 (359)
.-.-.|..|.++|.| .++|-+|..| |.|-.+.... ..+......... . .......+....+...|..+.|+|
T Consensus 82 ~~~f~v~~i~~n~~g-~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~C-r--t~~v~~~~~~~~~~~~i~qv~WhP 156 (717)
T PF10168_consen 82 PPLFEVHQISLNPTG-SLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINC-R--TVPVDERFFTSNSSLEIKQVRWHP 156 (717)
T ss_pred CCceeEEEEEECCCC-CEEEEEcCCc-EEEEEeccccCccccccCCCcceeE-E--EEEechhhccCCCCceEEEEEEcC
Confidence 344689999999999 6777666644 5555554310 001000000000 0 000000111123445889999999
Q ss_pred CC--CCeEEEEcCCCcEEEEecCCC
Q 018235 240 IT--TGRLVTGDCNSCIYLWEPASD 262 (359)
Q Consensus 240 ~~--~~~l~sgs~dg~I~lwd~~~~ 262 (359)
.+ ...|+.-..|++|++||+...
T Consensus 157 ~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 157 WSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred CCCCCCeEEEEecCCEEEEEecCCC
Confidence 85 237888888999999999753
No 429
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=74.16 E-value=85 Score=30.15 Aligned_cols=141 Identities=9% Similarity=0.028 Sum_probs=69.7
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCC----CCCeEEEEcCC
Q 018235 176 QNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI----TTGRLVTGDCN 251 (359)
Q Consensus 176 ~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~----~~~~l~sgs~d 251 (359)
++...|+.|+..|.++||+....... ...+..-..-..+|..|..-+. ....||. =.-
T Consensus 35 ~~~d~IivGS~~G~LrIy~P~~~~~~-----------------~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP 96 (418)
T PF14727_consen 35 SGSDKIIVGSYSGILRIYDPSGNEFQ-----------------PEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHP 96 (418)
T ss_pred CCccEEEEeccccEEEEEccCCCCCC-----------------CccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecC
Confidence 34468899999999999998542100 1111111122346776665321 1113333 335
Q ss_pred CcEEEEecCCCCcc-----eecCccccCCC--CCeEEEEecCC----CCCEEEEEeCCCcEEEEECCCCCCceEEee--c
Q 018235 252 SCIYLWEPASDATW-----NVDPNPFIGHS--ASVEDLQWSPT----EPDVFASCSVDGHIAIWDTRVGKSALTSFK--A 318 (359)
Q Consensus 252 g~I~lwd~~~~~~~-----~~~~~~~~~h~--~~V~~v~~sp~----~~~~las~s~Dg~I~iwD~r~~~~~~~~~~--~ 318 (359)
..+.+|.+.....- .........|. .....+++-|. +..+++.-+.||.+.+++-+.. .-...+. -
T Consensus 97 ~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~-~f~~~lp~~l 175 (418)
T PF14727_consen 97 RKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESF-AFSRFLPDFL 175 (418)
T ss_pred CEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcE-EEEEEcCCCC
Confidence 56666666321110 00011222232 22233333332 2458999999999999997763 1111221 2
Q ss_pred CCCCEEEEEEcCCCCeEEEE
Q 018235 319 HNADVNVISWNRCWLAVCWH 338 (359)
Q Consensus 319 h~~~V~~i~~s~~~~~l~~~ 338 (359)
+.++ |.|++....++..
T Consensus 176 lPgP---l~Y~~~tDsfvt~ 192 (418)
T PF14727_consen 176 LPGP---LCYCPRTDSFVTA 192 (418)
T ss_pred CCcC---eEEeecCCEEEEe
Confidence 2333 4666655555444
No 430
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.12 E-value=38 Score=33.19 Aligned_cols=76 Identities=13% Similarity=0.128 Sum_probs=43.8
Q ss_pred CCCeEEEEecCCCCCEEEEEeCCCcEEEEECCC-C-------CCceEEe-----------ecCCCCEEEEEEcCCC---C
Q 018235 276 SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV-G-------KSALTSF-----------KAHNADVNVISWNRCW---L 333 (359)
Q Consensus 276 ~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~-~-------~~~~~~~-----------~~h~~~V~~i~~s~~~---~ 333 (359)
.-.|..|..++.|. .+|-.+.+|.+.++=.+. + .++.... ....-.+..++|+|++ .
T Consensus 103 ~feV~~vl~s~~GS-~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~ 181 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGS-HVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDP 181 (741)
T ss_pred eEEEEEEEecCCCc-eEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCc
Confidence 34678888999999 666666777655542111 1 1111111 1111236778999987 2
Q ss_pred eEEEEeeecccceEEEEEeCcCC
Q 018235 334 AVCWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 334 ~l~~~~~~~~~d~~i~iwd~~~g 356 (359)
.++.-.. |+.||+++.+..
T Consensus 182 hL~iL~s----dnviRiy~lS~~ 200 (741)
T KOG4460|consen 182 HLVLLTS----DNVIRIYSLSEP 200 (741)
T ss_pred eEEEEec----CcEEEEEecCCc
Confidence 3333223 888999987653
No 431
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=73.72 E-value=83 Score=29.78 Aligned_cols=82 Identities=20% Similarity=0.262 Sum_probs=42.9
Q ss_pred CCCeEEEEecCCCCCEEEEEeC---CCc-EEEEECCCCCCceEEeecCCC--CEEEEEEcCCCCeEEEEeee-cccceEE
Q 018235 276 SASVEDLQWSPTEPDVFASCSV---DGH-IAIWDTRVGKSALTSFKAHNA--DVNVISWNRCWLAVCWHLEV-MMEHFLF 348 (359)
Q Consensus 276 ~~~V~~v~~sp~~~~~las~s~---Dg~-I~iwD~r~~~~~~~~~~~h~~--~V~~i~~s~~~~~l~~~~~~-~~~d~~i 348 (359)
+..+.-++|||..+++|+-|-. +.. -|||=+++.......+..|.. .+..=-|.|+|..+.+.... ++.+..|
T Consensus 187 ~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i 266 (386)
T PF14583_consen 187 TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWI 266 (386)
T ss_dssp SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEE
T ss_pred CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEE
Confidence 4455678999999988888864 222 356665554233444433332 23444689999988886653 3335667
Q ss_pred EEEeCcCCc
Q 018235 349 MILDCSRGE 357 (359)
Q Consensus 349 ~iwd~~~g~ 357 (359)
.-.++.+++
T Consensus 267 ~~~d~~t~~ 275 (386)
T PF14583_consen 267 AGYDPDTGE 275 (386)
T ss_dssp EEE-TTT--
T ss_pred EeeCCCCCC
Confidence 777776654
No 432
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=73.47 E-value=1.3e+02 Score=31.95 Aligned_cols=89 Identities=10% Similarity=-0.010 Sum_probs=60.4
Q ss_pred eEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEe--ecCCC
Q 018235 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF--KAHNA 321 (359)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~--~~h~~ 321 (359)
+|++|- ...|++|+..+ .+.+ +.-..|...+..+...-.+. .++.|..=++|.+.-.+........+ .-+..
T Consensus 841 kllA~I-n~~vrLye~t~-~~eL---r~e~~~~~~~~aL~l~v~gd-eI~VgDlm~Sitll~y~~~eg~f~evArD~~p~ 914 (1096)
T KOG1897|consen 841 KLLAGI-NQSVRLYEWTT-EREL---RIECNISNPIIALDLQVKGD-EIAVGDLMRSITLLQYKGDEGNFEEVARDYNPN 914 (1096)
T ss_pred eEEEec-CcEEEEEEccc-ccee---hhhhcccCCeEEEEEEecCc-EEEEeeccceEEEEEEeccCCceEEeehhhCcc
Confidence 565554 67899999876 3222 44456777888888887887 89999998999988877653334443 34566
Q ss_pred CEEEEEEcCCCCeEEEE
Q 018235 322 DVNVISWNRCWLAVCWH 338 (359)
Q Consensus 322 ~V~~i~~s~~~~~l~~~ 338 (359)
++..+.+-.+..++...
T Consensus 915 Wmtaveil~~d~ylgae 931 (1096)
T KOG1897|consen 915 WMTAVEILDDDTYLGAE 931 (1096)
T ss_pred ceeeEEEecCceEEeec
Confidence 66676666555555444
No 433
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=72.72 E-value=77 Score=28.97 Aligned_cols=127 Identities=13% Similarity=0.129 Sum_probs=68.4
Q ss_pred ceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecC-----CCCceEEEEeCCC-
Q 018235 167 CVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGG-----HKDEGYAIDWNPI- 240 (359)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----h~~~v~~l~~sp~- 240 (359)
--+.|+++|.+ .+.++....+...+||......... ....+.++.. .....+.+.|+..
T Consensus 24 N~WGia~~p~~-~~WVadngT~~~TlYdg~~~~~~g~--------------~~~L~vtiP~~~~~~~~~~PTGiVfN~~~ 88 (336)
T TIGR03118 24 NAWGLSYRPGG-PFWVANTGTGTATLYVGNPDTQPLV--------------QDPLVVVIPAPPPLAAEGTPTGQVFNGSD 88 (336)
T ss_pred ccceeEecCCC-CEEEecCCcceEEeecCCcccccCC--------------ccceEEEecCCCCCCCCCCccEEEEeCCC
Confidence 34688999988 5677778889999999973211100 0011111110 0113344444422
Q ss_pred ----------CCCeEEEEcCCCcEEEEecCCCCcceec-Ccccc-CCCCCe-EEEEecCC--CCCEEEEEeCCCcEEEEE
Q 018235 241 ----------TTGRLVTGDCNSCIYLWEPASDATWNVD-PNPFI-GHSASV-EDLQWSPT--EPDVFASCSVDGHIAIWD 305 (359)
Q Consensus 241 ----------~~~~l~sgs~dg~I~lwd~~~~~~~~~~-~~~~~-~h~~~V-~~v~~sp~--~~~~las~s~Dg~I~iwD 305 (359)
+...++.++.||+|.-|........+.. ...+. .....| ..+++... +..+.|+--..++|.++|
T Consensus 89 ~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd 168 (336)
T TIGR03118 89 TFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFK 168 (336)
T ss_pred ceEEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEec
Confidence 1225788899999999986442220000 01111 112333 34555543 454666666789999998
Q ss_pred CCC
Q 018235 306 TRV 308 (359)
Q Consensus 306 ~r~ 308 (359)
-.-
T Consensus 169 ~~f 171 (336)
T TIGR03118 169 GSF 171 (336)
T ss_pred Ccc
Confidence 653
No 434
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=72.13 E-value=1e+02 Score=30.27 Aligned_cols=19 Identities=16% Similarity=0.345 Sum_probs=15.9
Q ss_pred eEEEEcCCCcEEEEecCCC
Q 018235 244 RLVTGDCNSCIYLWEPASD 262 (359)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~ 262 (359)
.++.++.+|.+...|.+++
T Consensus 303 ~V~~g~~~G~l~ald~~tG 321 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTG 321 (488)
T ss_pred EEEEECCCceEEEEECCCC
Confidence 5777888999999999884
No 435
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=71.68 E-value=1.1e+02 Score=30.14 Aligned_cols=19 Identities=5% Similarity=0.230 Sum_probs=16.3
Q ss_pred eEEEEcCCCcEEEEecCCC
Q 018235 244 RLVTGDCNSCIYLWEPASD 262 (359)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~ 262 (359)
.++.++.+|.|..+|.+++
T Consensus 112 ~V~v~~~~g~v~AlD~~TG 130 (488)
T cd00216 112 KVFFGTFDGRLVALDAETG 130 (488)
T ss_pred eEEEecCCCeEEEEECCCC
Confidence 7788888999999999874
No 436
>PHA03098 kelch-like protein; Provisional
Probab=71.45 E-value=1.1e+02 Score=30.26 Aligned_cols=106 Identities=8% Similarity=0.047 Sum_probs=48.7
Q ss_pred eEEEEcCC------CcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCC--------CcEEEEECCCC
Q 018235 244 RLVTGDCN------SCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD--------GHIAIWDTRVG 309 (359)
Q Consensus 244 ~l~sgs~d------g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D--------g~I~iwD~r~~ 309 (359)
+++.|+.. ..+..||+.+ .+|... .++.........+. ..+. +++.|+.+ ..+.+||..+.
T Consensus 392 iYv~GG~~~~~~~~~~v~~yd~~t-~~W~~~-~~~p~~r~~~~~~~--~~~~-iyv~GG~~~~~~~~~~~~v~~yd~~~~ 466 (534)
T PHA03098 392 IYVIGGISKNDELLKTVECFSLNT-NKWSKG-SPLPISHYGGCAIY--HDGK-IYVIGGISYIDNIKVYNIVESYNPVTN 466 (534)
T ss_pred EEEECCcCCCCcccceEEEEeCCC-Ceeeec-CCCCccccCceEEE--ECCE-EEEECCccCCCCCcccceEEEecCCCC
Confidence 56666632 4578899876 566521 11111111111222 2344 77777643 23788898875
Q ss_pred CCc-eEEeecCCCCEEEEEEcCCCCeEEEEeeeccc-ceEEEEEeCcCC
Q 018235 310 KSA-LTSFKAHNADVNVISWNRCWLAVCWHLEVMME-HFLFMILDCSRG 356 (359)
Q Consensus 310 ~~~-~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~-d~~i~iwd~~~g 356 (359)
.-. +..+.........+.+ ++.+++++...... ...+.++|+.++
T Consensus 467 ~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 467 KWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred ceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 211 1111101111112222 56666666543211 345777776654
No 437
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=71.07 E-value=74 Score=28.10 Aligned_cols=127 Identities=9% Similarity=0.050 Sum_probs=62.8
Q ss_pred eeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEE--eCCCCCCeE
Q 018235 168 VNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAID--WNPITTGRL 245 (359)
Q Consensus 168 V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~--~sp~~~~~l 245 (359)
|..+...+.- ++++.-+ |+.++++++............... .......-......+...+ -...+. ..
T Consensus 38 I~ql~vl~~~-~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~v~~f~~~~~~~~~-~~ 107 (275)
T PF00780_consen 38 ITQLSVLPEL-NLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFP-------KSRSLPTKLPETKGVSFFAVNGGHEGS-RR 107 (275)
T ss_pred EEEEEEeccc-CEEEEEc-CCccEEEEchhhcccccccccccc-------ccccccccccccCCeeEEeeccccccc-eE
Confidence 9999999877 3444433 499999999873221110000000 0000000011122233333 112232 33
Q ss_pred EEEcCCCcEEEEecCCCC-cceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCC
Q 018235 246 VTGDCNSCIYLWEPASDA-TWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG 309 (359)
Q Consensus 246 ~sgs~dg~I~lwd~~~~~-~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~ 309 (359)
+......+|++|...... ......+.+. -...+.+++|.++ .++.|..+ ...+.|+.++
T Consensus 108 L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~~---~i~v~~~~-~f~~idl~~~ 167 (275)
T PF00780_consen 108 LCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLGN---KICVGTSK-GFYLIDLNTG 167 (275)
T ss_pred EEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEeCC---EEEEEeCC-ceEEEecCCC
Confidence 444446699998876531 1101112232 3478889999833 56656544 4778888865
No 438
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=68.28 E-value=95 Score=28.25 Aligned_cols=149 Identities=11% Similarity=0.053 Sum_probs=90.3
Q ss_pred EEEecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
..++.-.+-++.++++-+ ++..+..+.-++|+|+..+ .+|...-.-.. .+++-.|.
T Consensus 80 ~~~i~~~~l~~Dv~vse~---yvyvad~ssGL~IvDIS~P--------------------~sP~~~~~lnt-~gyaygv~ 135 (370)
T COG5276 80 LSVINARDLFADVRVSEE---YVYVADWSSGLRIVDISTP--------------------DSPTLIGFLNT-DGYAYGVY 135 (370)
T ss_pred EEEEehhhhhheeEeccc---EEEEEcCCCceEEEeccCC--------------------CCcceeccccC-CceEEEEE
Confidence 344455677888888764 4444456677999999983 44533221122 26666777
Q ss_pred CCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEee-
Q 018235 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK- 317 (359)
Q Consensus 239 p~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~- 317 (359)
-.|+ +...++-+.-+.+.|+..+.++.+. ..+........+++.|-+ .-..+..|+-+.|.|+..+..|.+.-.
T Consensus 136 vsGn-~aYVadlddgfLivdvsdpssP~la-grya~~~~d~~~v~ISGn---~AYvA~~d~GL~ivDVSnp~sPvli~~~ 210 (370)
T COG5276 136 VSGN-YAYVADLDDGFLIVDVSDPSSPQLA-GRYALPGGDTHDVAISGN---YAYVAWRDGGLTIVDVSNPHSPVLIGSY 210 (370)
T ss_pred ecCC-EEEEeeccCcEEEEECCCCCCceee-eeeccCCCCceeEEEecC---eEEEEEeCCCeEEEEccCCCCCeEEEEE
Confidence 7777 7777775556667888776554421 223333344466776644 334455788899999998755543322
Q ss_pred cCCCCEEEEEEcCCCCeEE
Q 018235 318 AHNADVNVISWNRCWLAVC 336 (359)
Q Consensus 318 ~h~~~V~~i~~s~~~~~l~ 336 (359)
.....+.++..+++--+++
T Consensus 211 n~g~g~~sv~vsdnr~y~v 229 (370)
T COG5276 211 NTGPGTYSVSVSDNRAYLV 229 (370)
T ss_pred ecCCceEEEEecCCeeEEE
Confidence 2233678888787655544
No 439
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=67.88 E-value=77 Score=29.75 Aligned_cols=103 Identities=17% Similarity=0.187 Sum_probs=54.9
Q ss_pred eEEEEeCCCCCCeEEEEc-----------CCC-cEEEEecCCC-CcceecCccccCCCCCeEEEEecCCCCCEEEEEeCC
Q 018235 232 GYAIDWNPITTGRLVTGD-----------CNS-CIYLWEPASD-ATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD 298 (359)
Q Consensus 232 v~~l~~sp~~~~~l~sgs-----------~dg-~I~lwd~~~~-~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D 298 (359)
..+|+|.+.+. ++++-. ..+ .|.+++-..+ +... ....|...-...+.+++.+++ +++++ ..
T Consensus 16 P~~ia~d~~G~-l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d-~~~vfa~~l~~p~Gi~~~~~G--lyV~~-~~ 90 (367)
T TIGR02604 16 PIAVCFDERGR-LWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYD-KSNVFAEELSMVTGLAVAVGG--VYVAT-PP 90 (367)
T ss_pred CceeeECCCCC-EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcc-eeEEeecCCCCccceeEecCC--EEEeC-CC
Confidence 44789988886 555532 223 7777754332 2211 112333333456788998887 66653 44
Q ss_pred CcEEEEECCCCC----C--ceEE-eec----CCCCEEEEEEcCCCCeEEEEe
Q 018235 299 GHIAIWDTRVGK----S--ALTS-FKA----HNADVNVISWNRCWLAVCWHL 339 (359)
Q Consensus 299 g~I~iwD~r~~~----~--~~~~-~~~----h~~~V~~i~~s~~~~~l~~~~ 339 (359)
..+++.|..... + .+.. +.. +....+.+.|.|+|.+.+...
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 444454553210 1 1111 211 134478899999998665443
No 440
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=64.74 E-value=27 Score=20.62 Aligned_cols=23 Identities=13% Similarity=0.215 Sum_probs=17.7
Q ss_pred CCCCcEEEEEeCCCcEEEEECCC
Q 018235 175 TQNPHICASWADTGHVQVWDLRS 197 (359)
Q Consensus 175 p~~~~~lat~s~dg~V~iwd~~~ 197 (359)
|++..++++...++.|.++|...
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~ 23 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTAT 23 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCC
Confidence 45556777777889999999865
No 441
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=63.99 E-value=72 Score=29.49 Aligned_cols=104 Identities=10% Similarity=0.104 Sum_probs=53.7
Q ss_pred eEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCc--ceecC-ccccCCCCCeEEEEecCC---CCCEEEEEeCC------C
Q 018235 232 GYAIDWNPITTGRLVTGDCNSCIYLWEPASDAT--WNVDP-NPFIGHSASVEDLQWSPT---EPDVFASCSVD------G 299 (359)
Q Consensus 232 v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~--~~~~~-~~~~~h~~~V~~v~~sp~---~~~~las~s~D------g 299 (359)
-.+|+|.|++. +|+ +...|.|++++. .+.. .+... ............++++|+ ...++++-+.. .
T Consensus 4 P~~~a~~pdG~-l~v-~e~~G~i~~~~~-~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 4 PRSMAFLPDGR-LLV-AERSGRIWVVDK-DGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp EEEEEEETTSC-EEE-EETTTEEEEEET-TTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred ceEEEEeCCCc-EEE-EeCCceEEEEeC-CCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 46899999975 555 566999999983 3221 11111 223345567899999995 23255544422 2
Q ss_pred --cEEEEECCCCC------CceE-Eeec---CCCCEEEEEEcCCCCeEEEE
Q 018235 300 --HIAIWDTRVGK------SALT-SFKA---HNADVNVISWNRCWLAVCWH 338 (359)
Q Consensus 300 --~I~iwD~r~~~------~~~~-~~~~---h~~~V~~i~~s~~~~~l~~~ 338 (359)
.|.-|...... +.+. .+.. .......|.|.|+|.+.+..
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~ 131 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSV 131 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEE
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEe
Confidence 22223222210 1111 1122 23345779999999655544
No 442
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=62.31 E-value=1.5e+02 Score=28.55 Aligned_cols=53 Identities=13% Similarity=0.161 Sum_probs=29.5
Q ss_pred CCeEEEEecCCCCCEEEEEe--------------------CCCcEEEEECCCCCCceEEeecCC--CCEEEEEEcCC
Q 018235 277 ASVEDLQWSPTEPDVFASCS--------------------VDGHIAIWDTRVGKSALTSFKAHN--ADVNVISWNRC 331 (359)
Q Consensus 277 ~~V~~v~~sp~~~~~las~s--------------------~Dg~I~iwD~r~~~~~~~~~~~h~--~~V~~i~~s~~ 331 (359)
..-+++.|.|... +++|.. .-.++++||+.+. +.++++.--. ....-|.|..+
T Consensus 181 ~~gYDfw~qpr~n-vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r-~~~Q~idLg~~g~~pLEvRflH~ 255 (461)
T PF05694_consen 181 PFGYDFWYQPRHN-VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTR-KLLQTIDLGEEGQMPLEVRFLHD 255 (461)
T ss_dssp -----EEEETTTT-EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTT-EEEEEEES-TTEEEEEEEEE-SS
T ss_pred CCCCCeEEcCCCC-EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCC-cEeeEEecCCCCCceEEEEecCC
Confidence 4457888888777 777753 2468999999997 7777774322 22445555443
No 443
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.27 E-value=1.5e+02 Score=32.50 Aligned_cols=72 Identities=15% Similarity=0.194 Sum_probs=43.9
Q ss_pred CCCeEEEEecCCCCCEEEEEeCCCcEEEEECC----CC--CC-----------------ceEEee-cCCCCEEEEEEcCC
Q 018235 276 SASVEDLQWSPTEPDVFASCSVDGHIAIWDTR----VG--KS-----------------ALTSFK-AHNADVNVISWNRC 331 (359)
Q Consensus 276 ~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r----~~--~~-----------------~~~~~~-~h~~~V~~i~~s~~ 331 (359)
...|+|+....+|. +|.+|-.+ .||.+- .+ .+ .+..+. .+..+|..|.....
T Consensus 178 g~~V~~I~~t~nGR-IF~~G~dg---~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S 253 (1311)
T KOG1900|consen 178 GVSVNCITYTENGR-IFFAGRDG---NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS 253 (1311)
T ss_pred CceEEEEEeccCCc-EEEeecCC---CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc
Confidence 56789999888888 77776655 444331 11 00 112223 55678888887754
Q ss_pred CCeEEEEeeecccceEEEEEeCcC
Q 018235 332 WLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 332 ~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
.. +++... +.+.+++|+...
T Consensus 254 R~-IlY~ls---ek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 254 RN-ILYVLS---EKGTVSAYDIGG 273 (1311)
T ss_pred cc-eeeeec---cCceEEEEEccC
Confidence 44 444443 277899999765
No 444
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=60.68 E-value=63 Score=23.55 Aligned_cols=54 Identities=9% Similarity=-0.133 Sum_probs=32.9
Q ss_pred EEeCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEE
Q 018235 294 SCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMIL 351 (359)
Q Consensus 294 s~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iw 351 (359)
.+..+|.+.-||.+++ ....+..--...|.|+.++++.+++..-. ....+.+.|
T Consensus 32 e~~~~GRll~ydp~t~--~~~vl~~~L~fpNGVals~d~~~vlv~Et--~~~Ri~ryw 85 (89)
T PF03088_consen 32 EGRPTGRLLRYDPSTK--ETTVLLDGLYFPNGVALSPDESFVLVAET--GRYRILRYW 85 (89)
T ss_dssp HT---EEEEEEETTTT--EEEEEEEEESSEEEEEE-TTSSEEEEEEG--GGTEEEEEE
T ss_pred cCCCCcCEEEEECCCC--eEEEehhCCCccCeEEEcCCCCEEEEEec--cCceEEEEE
Confidence 3455678888999986 33333222335799999999998776632 235667777
No 445
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=59.14 E-value=1.9e+02 Score=29.17 Aligned_cols=106 Identities=10% Similarity=0.154 Sum_probs=51.5
Q ss_pred eEEEEcCC------CcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCc-----EEEEECCCCCCc
Q 018235 244 RLVTGDCN------SCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGH-----IAIWDTRVGKSA 312 (359)
Q Consensus 244 ~l~sgs~d------g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~-----I~iwD~r~~~~~ 312 (359)
+.+.|+.+ .++..||+.+ +.|... .++..-........+ ++. +++.|+.|+. |-.+|.++.+-.
T Consensus 430 iYi~GG~~~~~~~l~sve~YDP~t-~~W~~~-~~M~~~R~~~g~a~~--~~~-iYvvGG~~~~~~~~~VE~ydp~~~~W~ 504 (571)
T KOG4441|consen 430 LYIIGGGDGSSNCLNSVECYDPET-NTWTLI-APMNTRRSGFGVAVL--NGK-IYVVGGFDGTSALSSVERYDPETNQWT 504 (571)
T ss_pred EEEEcCcCCCccccceEEEEcCCC-Cceeec-CCcccccccceEEEE--CCE-EEEECCccCCCccceEEEEcCCCCcee
Confidence 66777644 4567899987 666531 222221122222222 444 8888887763 667888875221
Q ss_pred eEE-eecCCCCEEEEEEcCCCCeEEEEe-eecccceEEEEEeCcCC
Q 018235 313 LTS-FKAHNADVNVISWNRCWLAVCWHL-EVMMEHFLFMILDCSRG 356 (359)
Q Consensus 313 ~~~-~~~h~~~V~~i~~s~~~~~l~~~~-~~~~~d~~i~iwd~~~g 356 (359)
... +....+.+.+..+ ++.+.+.+. .....-.++..||+.++
T Consensus 505 ~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 505 MVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred EcccCccccccccEEEE--CCEEEEEecccCccccceeEEcCCCCC
Confidence 111 2222222222222 244334333 22222356777776654
No 446
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=58.59 E-value=1.4e+02 Score=26.95 Aligned_cols=74 Identities=16% Similarity=0.344 Sum_probs=45.8
Q ss_pred CCceEEEEeCCCCCCeEEEEc------CCCcEEEEecCCCCcceecCccccC-----CCCCeEEEEecCC-CCCEEEEEe
Q 018235 229 KDEGYAIDWNPITTGRLVTGD------CNSCIYLWEPASDATWNVDPNPFIG-----HSASVEDLQWSPT-EPDVFASCS 296 (359)
Q Consensus 229 ~~~v~~l~~sp~~~~~l~sgs------~dg~I~lwd~~~~~~~~~~~~~~~~-----h~~~V~~v~~sp~-~~~~las~s 296 (359)
.+.|++|.|..... ++++|. ....+..||... ..|. .+.+ -.++|..+.+... +..++++|.
T Consensus 36 ~G~V~~l~~~~~~~-Llv~G~ft~~~~~~~~la~yd~~~-~~w~----~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~ 109 (281)
T PF12768_consen 36 SGTVTDLQWASNNQ-LLVGGNFTLNGTNSSNLATYDFKN-QTWS----SLGGGSSNSIPGPVTALTFISNDGSNFWVAGR 109 (281)
T ss_pred eEEEEEEEEecCCE-EEEEEeeEECCCCceeEEEEecCC-Ceee----ecCCcccccCCCcEEEEEeeccCCceEEEece
Confidence 45899999986655 777774 455788899976 5663 2222 2367888777433 333665554
Q ss_pred -CCC--cEEEEECCC
Q 018235 297 -VDG--HIAIWDTRV 308 (359)
Q Consensus 297 -~Dg--~I~iwD~r~ 308 (359)
.++ .|..||-..
T Consensus 110 ~~~g~~~l~~~dGs~ 124 (281)
T PF12768_consen 110 SANGSTFLMKYDGSS 124 (281)
T ss_pred ecCCCceEEEEcCCc
Confidence 343 366665443
No 447
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=56.42 E-value=1.3e+02 Score=25.90 Aligned_cols=105 Identities=15% Similarity=0.239 Sum_probs=62.0
Q ss_pred cEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCC---C---
Q 018235 179 HICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCN---S--- 252 (359)
Q Consensus 179 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~d---g--- 252 (359)
.++++ ...+.|.+|++... ...+..+|..- +.|..|.++..|. +|+|--.+ .
T Consensus 30 ~Lfva-~~g~~Vev~~l~~~-------------------~~~~~~~F~Tv-~~V~~l~y~~~GD-YlvTlE~k~~~~~~~ 87 (215)
T PF14761_consen 30 ALFVA-ASGCKVEVYDLEQE-------------------ECPLLCTFSTV-GRVLQLVYSEAGD-YLVTLEEKNKRSPVD 87 (215)
T ss_pred eEEEE-cCCCEEEEEEcccC-------------------CCceeEEEcch-hheeEEEeccccc-eEEEEEeecCCccce
Confidence 34443 55678999999842 25666777654 6889999999998 88885332 2
Q ss_pred cEEEE---ecCC-CCcceecCccccCC---------------------CCCeEEEEecCCCCCEEEEEeCCCcEEEEECC
Q 018235 253 CIYLW---EPAS-DATWNVDPNPFIGH---------------------SASVEDLQWSPTEPDVFASCSVDGHIAIWDTR 307 (359)
Q Consensus 253 ~I~lw---d~~~-~~~~~~~~~~~~~h---------------------~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r 307 (359)
.+++| .... ...++. ..+.|| ..++.+++.+|...++++.+ ++++.||-+.
T Consensus 88 fvR~Y~NWr~~~~~~~~v~--vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~ 163 (215)
T PF14761_consen 88 FVRAYFNWRSQKEENSPVR--VRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLK 163 (215)
T ss_pred EEEEEEEhhhhcccCCcEE--EEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEE
Confidence 45554 3321 111110 011121 34566777777655455433 4578888776
Q ss_pred CC
Q 018235 308 VG 309 (359)
Q Consensus 308 ~~ 309 (359)
..
T Consensus 164 ~~ 165 (215)
T PF14761_consen 164 YQ 165 (215)
T ss_pred EE
Confidence 53
No 448
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=51.15 E-value=38 Score=18.44 Aligned_cols=23 Identities=4% Similarity=0.164 Sum_probs=12.1
Q ss_pred EEEEecCCCCCEEEEEeCCCcEEE
Q 018235 280 EDLQWSPTEPDVFASCSVDGHIAI 303 (359)
Q Consensus 280 ~~v~~sp~~~~~las~s~Dg~I~i 303 (359)
.+|+.+++|. ++++-+....|++
T Consensus 5 ~gvav~~~g~-i~VaD~~n~rV~v 27 (28)
T PF01436_consen 5 HGVAVDSDGN-IYVADSGNHRVQV 27 (28)
T ss_dssp EEEEEETTSE-EEEEECCCTEEEE
T ss_pred cEEEEeCCCC-EEEEECCCCEEEE
Confidence 3455555555 5555555555544
No 449
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=50.24 E-value=1.3e+02 Score=23.90 Aligned_cols=118 Identities=10% Similarity=0.055 Sum_probs=65.0
Q ss_pred eEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCC----CCCeE
Q 018235 170 RIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI----TTGRL 245 (359)
Q Consensus 170 ~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~----~~~~l 245 (359)
.-+|....| -|+.++..|+|.|++.......... ...++..+.- ...|.+|+-.+. ..-.|
T Consensus 3 iGkfDG~~p-cL~~aT~~gKV~IH~ph~~~~~~~~-------------~~~~i~~LNi-n~~italaaG~l~~~~~~D~L 67 (136)
T PF14781_consen 3 IGKFDGVHP-CLACATTGGKVFIHNPHERGQRTGR-------------QDSDISFLNI-NQEITALAAGRLKPDDGRDCL 67 (136)
T ss_pred EEEeCCCce-eEEEEecCCEEEEECCCcccccccc-------------ccCceeEEEC-CCceEEEEEEecCCCCCcCEE
Confidence 345666664 5666678899999987763211100 1234444433 446777765443 23367
Q ss_pred EEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCC--CEEEEEeCCCcEEEEECCC
Q 018235 246 VTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEP--DVFASCSVDGHIAIWDTRV 308 (359)
Q Consensus 246 ~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~--~~las~s~Dg~I~iwD~r~ 308 (359)
+.|+ ...|..||+...... .+..-...|+++.+-..+. .-++.++.+.+|.-||...
T Consensus 68 liGt-~t~llaYDV~~N~d~-----Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G 126 (136)
T PF14781_consen 68 LIGT-QTSLLAYDVENNSDL-----FYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEG 126 (136)
T ss_pred EEec-cceEEEEEcccCchh-----hhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCC
Confidence 7777 567889999763321 2333446777776632111 1344444455566665543
No 450
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=49.88 E-value=26 Score=36.05 Aligned_cols=107 Identities=15% Similarity=0.320 Sum_probs=58.3
Q ss_pred CCCceeeEEEeCCCCcEEEEEeCCC-----cEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeC
Q 018235 164 HQGCVNRIRAMTQNPHICASWADTG-----HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (359)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg-----~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (359)
..|.-.-+.|-|+| ..+||-..|| .|.++.-+.. +.+.+-.. .+-....+.++|+
T Consensus 245 ~~g~e~~LSWkpqg-S~~ati~td~~~~S~~ViFfErNGL------------------rHGef~lr-~~~dEk~~~~~wn 304 (1243)
T COG5290 245 VTGMEHQLSWKPQG-SKYATIGTDGCSTSESVIFFERNGL------------------RHGEFDLR-VGCDEKAFLENWN 304 (1243)
T ss_pred cccchhccccccCC-ceeeeeccCCCCCcceEEEEccCCc------------------ccCCcccc-CCchhhhhhhhhh
Confidence 33444457899999 6788765443 2334433220 01222111 1222356788998
Q ss_pred CCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEe
Q 018235 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS 296 (359)
Q Consensus 239 p~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s 296 (359)
.... .++.+ ..+.|.+|-..+ -.|..... ..-..+.-|.|+|...+.+.-..
T Consensus 305 ~~s~-vlav~-~~n~~~lwttkN-yhWYLK~e---~~ip~~s~vkwhpe~~nTl~f~d 356 (1243)
T COG5290 305 LLST-VLAVA-EGNLLKLWTTKN-YHWYLKVE---RQIPGISYVKWHPEEKNTLLFRD 356 (1243)
T ss_pred HHHH-HHHHh-hcceEEEEEccc-eEEEEEEe---ecCCCcceeeeccccCcEEEEec
Confidence 8776 55544 467899998765 34442111 12234556789998775444433
No 451
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.42 E-value=3.2e+02 Score=28.30 Aligned_cols=56 Identities=21% Similarity=0.328 Sum_probs=38.5
Q ss_pred CCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEee--cCCCCEEEEEEcCCCCeE
Q 018235 277 ASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK--AHNADVNVISWNRCWLAV 335 (359)
Q Consensus 277 ~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~--~h~~~V~~i~~s~~~~~l 335 (359)
+.+.-+..||+.. .||-=...|.|.+-..... +.+..+. .|..+ -.++|.-+...+
T Consensus 217 ~~~~ki~VS~n~~-~laLyt~~G~i~~vs~D~~-~~lce~~~~~~~~p-~qm~WcgndaVv 274 (829)
T KOG2280|consen 217 SSVVKISVSPNRR-FLALYTETGKIWVVSIDLS-QILCEFNCTDHDPP-KQMAWCGNDAVV 274 (829)
T ss_pred ceEEEEEEcCCcc-eEEEEecCCcEEEEecchh-hhhhccCCCCCCch-HhceeecCCceE
Confidence 5566778889888 8888888899888877765 4555553 33332 367887766443
No 452
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.23 E-value=2.3e+02 Score=31.14 Aligned_cols=35 Identities=11% Similarity=0.047 Sum_probs=29.6
Q ss_pred CCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCC
Q 018235 227 GHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASD 262 (359)
Q Consensus 227 ~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~ 262 (359)
.+..+|..|....... .|.+-+..|+|.+|++...
T Consensus 240 ~~~dpI~qi~ID~SR~-IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 240 SSKDPIRQITIDNSRN-ILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred CCCCcceeeEeccccc-eeeeeccCceEEEEEccCC
Confidence 5677899999977665 9999999999999999763
No 453
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=47.85 E-value=2.6e+02 Score=26.87 Aligned_cols=59 Identities=17% Similarity=0.184 Sum_probs=35.1
Q ss_pred CCCeeeeCCcccCCCCceeeeChhHhhhhhcccccCcceeEEEEeccCCCCcccCCceEEEEEeecCCCCCCceEEEEEe
Q 018235 32 LPTKVWQPGVDKLEEGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKV 111 (359)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~l~~~~~~Y~~~~~~~~~wP~ls~~~~pd~~~~~~~~~~~~~~~~~GT~~~~~~~n~l~i~~~ 111 (359)
.--+||.|+.. ++.+ .+.+.+..+.-|-|.+..-+=..+... .+..|+ ..+.|.|+.+
T Consensus 47 G~LrIy~P~~~--------~~~~--~~lllE~~l~~PILqv~~G~F~s~~~~-----~~LaVL-------hP~kl~vY~v 104 (418)
T PF14727_consen 47 GILRIYDPSGN--------EFQP--EDLLLETQLKDPILQVECGKFVSGSED-----LQLAVL-------HPRKLSVYSV 104 (418)
T ss_pred cEEEEEccCCC--------CCCC--ccEEEEEecCCcEEEEEeccccCCCCc-----ceEEEe-------cCCEEEEEEE
Confidence 34578998544 2222 278889999999998887543211111 122222 3568888888
Q ss_pred e
Q 018235 112 S 112 (359)
Q Consensus 112 ~ 112 (359)
.
T Consensus 105 ~ 105 (418)
T PF14727_consen 105 S 105 (418)
T ss_pred E
Confidence 3
No 454
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=47.06 E-value=1.8e+02 Score=30.84 Aligned_cols=67 Identities=10% Similarity=0.036 Sum_probs=41.8
Q ss_pred cCCCCceEEEEeCCCCCCeEEE-EcCCC-----cEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEe
Q 018235 226 GGHKDEGYAIDWNPITTGRLVT-GDCNS-----CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS 296 (359)
Q Consensus 226 ~~h~~~v~~l~~sp~~~~~l~s-gs~dg-----~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s 296 (359)
..+...++.-+|||+|+ .|+- .+..+ .|++-++++.+.-+ ..+.--...|..-....+|.++|+-.+
T Consensus 346 ~~~~~~i~sP~~SPDG~-~vAY~ts~e~~~g~s~vYv~~L~t~~~~~---vkl~ve~aaiprwrv~e~gdt~ivyv~ 418 (912)
T TIGR02171 346 IEDTISVYHPDISPDGK-KVAFCTGIEGLPGKSSVYVRNLNASGSGL---VKLPVENAAIPRWRVLENGDTVIVYVS 418 (912)
T ss_pred ecCCCceecCcCCCCCC-EEEEEEeecCCCCCceEEEEehhccCCCc---eEeecccccccceEecCCCCeEEEEEc
Confidence 45677899999999999 6655 33333 48888988755433 223333455555555666665555444
No 455
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=46.33 E-value=1.4e+02 Score=26.62 Aligned_cols=35 Identities=9% Similarity=0.202 Sum_probs=26.6
Q ss_pred cCCCceeeEEEeCCC------CcEEEEEeCCCcEEEEECCC
Q 018235 163 AHQGCVNRIRAMTQN------PHICASWADTGHVQVWDLRS 197 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~------~~~lat~s~dg~V~iwd~~~ 197 (359)
.+...|+|+...... ...++.|.++|.|+|.|-..
T Consensus 174 ~~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~a 214 (257)
T PF14779_consen 174 KRQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQA 214 (257)
T ss_pred ccCceeEEeeeecccccCCCCcceEEEEecCCeEEEECchh
Confidence 356678888775432 45788899999999999776
No 456
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=46.18 E-value=63 Score=23.37 Aligned_cols=32 Identities=13% Similarity=0.290 Sum_probs=26.2
Q ss_pred CCeEEEEecCCCCCEEEEEeCCCcEEEEECCC
Q 018235 277 ASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV 308 (359)
Q Consensus 277 ~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~ 308 (359)
..-+.|..+|+++.++++....+.|+++..+.
T Consensus 54 ~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 54 SFANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 34577899999997888888899999997653
No 457
>PHA03098 kelch-like protein; Provisional
Probab=45.85 E-value=3.1e+02 Score=27.08 Aligned_cols=61 Identities=11% Similarity=0.292 Sum_probs=31.9
Q ss_pred eEEEEcCC-----CcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCC------CcEEEEECCCC
Q 018235 244 RLVTGDCN-----SCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD------GHIAIWDTRVG 309 (359)
Q Consensus 244 ~l~sgs~d-----g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D------g~I~iwD~r~~ 309 (359)
+++.|+.+ ..+..||+.+ .+|... .++.........+. -.+. +++.|+.+ ..+..||..+.
T Consensus 345 lyv~GG~~~~~~~~~v~~yd~~~-~~W~~~-~~lp~~r~~~~~~~--~~~~-iYv~GG~~~~~~~~~~v~~yd~~t~ 416 (534)
T PHA03098 345 IYVIGGIYNSISLNTVESWKPGE-SKWREE-PPLIFPRYNPCVVN--VNNL-IYVIGGISKNDELLKTVECFSLNTN 416 (534)
T ss_pred EEEEeCCCCCEecceEEEEcCCC-CceeeC-CCcCcCCccceEEE--ECCE-EEEECCcCCCCcccceEEEEeCCCC
Confidence 66667654 3477888876 566521 11211111111122 2344 77777632 45788888765
No 458
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=45.17 E-value=2.5e+02 Score=25.80 Aligned_cols=119 Identities=12% Similarity=0.121 Sum_probs=69.1
Q ss_pred ceEEEEeCCCCCCeEEEEcCCCcEEEEecCCC-----CcceecCcccc-----CCCCCeEEEEecCCCC-----------
Q 018235 231 EGYAIDWNPITTGRLVTGDCNSCIYLWEPASD-----ATWNVDPNPFI-----GHSASVEDLQWSPTEP----------- 289 (359)
Q Consensus 231 ~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~-----~~~~~~~~~~~-----~h~~~V~~v~~sp~~~----------- 289 (359)
..+.|+++|.+. ..++...-+...+||.... .+.++ ..+. ......+.+.|+....
T Consensus 24 N~WGia~~p~~~-~WVadngT~~~TlYdg~~~~~~g~~~~L~--vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~ 100 (336)
T TIGR03118 24 NAWGLSYRPGGP-FWVANTGTGTATLYVGNPDTQPLVQDPLV--VVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGP 100 (336)
T ss_pred ccceeEecCCCC-EEEecCCcceEEeecCCcccccCCccceE--EEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccc
Confidence 467899999997 8888888889999998621 11111 1111 1234677777775432
Q ss_pred CEEEEEeCCCcEEEEECCCCCC----ceEEeec-CCCCE-EEEEEcCC--CCeE-EEEeeecccceEEEEEeCcCC
Q 018235 290 DVFASCSVDGHIAIWDTRVGKS----ALTSFKA-HNADV-NVISWNRC--WLAV-CWHLEVMMEHFLFMILDCSRG 356 (359)
Q Consensus 290 ~~las~s~Dg~I~iwD~r~~~~----~~~~~~~-h~~~V-~~i~~s~~--~~~l-~~~~~~~~~d~~i~iwd~~~g 356 (359)
..|+.+++||+|.=|....... ....+.. ....| ..+++... +.+| +.... .+.|.++|.+-.
T Consensus 101 a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~----~g~IDVFd~~f~ 172 (336)
T TIGR03118 101 SRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFR----QGRIDVFKGSFR 172 (336)
T ss_pred eeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccC----CCceEEecCccc
Confidence 2478899999999998544311 2222321 12333 33444432 3333 33333 667888876543
No 459
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=44.85 E-value=3.9e+02 Score=28.01 Aligned_cols=158 Identities=8% Similarity=0.105 Sum_probs=86.3
Q ss_pred cCCCceeeEEEe---CC--C-CcEEEEEeCCCcEEEEECCCCcc--ccccccccccCCCCCCCCCCCcEEecCCCC---c
Q 018235 163 AHQGCVNRIRAM---TQ--N-PHICASWADTGHVQVWDLRSHLN--ALAESETIVGQGAPQVSNQSPLVKFGGHKD---E 231 (359)
Q Consensus 163 ~H~~~V~~i~~~---p~--~-~~~lat~s~dg~V~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~ 231 (359)
.-..+|..|+|. .. . +.+|+.-. ...+.|+...-+.. ....... . -...++..+..+.. +
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~s-------~-i~~~~l~~i~~~~tgg~~ 147 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRPS-------R-IDPNPLLTISSSDTGGFP 147 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCcc-------c-cccceeEEechhhcCCCc
Confidence 456778888887 21 1 24555533 45566776332211 0000000 0 02355566654332 5
Q ss_pred eEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCccee-cCccccCCC----------CCeEEEEecCCCCCEEEEEeCCCc
Q 018235 232 GYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNV-DPNPFIGHS----------ASVEDLQWSPTEPDVFASCSVDGH 300 (359)
Q Consensus 232 v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~-~~~~~~~h~----------~~V~~v~~sp~~~~~las~s~Dg~ 300 (359)
...++|+|.....||..+..|...||++....+... .......+. +.-..|.|.++.. .|+.|+. ..
T Consensus 148 ~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~-~lLv~~r-~~ 225 (765)
T PF10214_consen 148 HADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSN-RLLVCNR-SK 225 (765)
T ss_pred cceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCC-EEEEEcC-Cc
Confidence 568999999888999999999999999922111000 001111111 2234688988776 5555543 56
Q ss_pred EEEEECCCCCC-ceEEeecCCCCEEEEEEcCC
Q 018235 301 IAIWDTRVGKS-ALTSFKAHNADVNVISWNRC 331 (359)
Q Consensus 301 I~iwD~r~~~~-~~~~~~~h~~~V~~i~~s~~ 331 (359)
+.++|+.+... .+.........|..+.-++.
T Consensus 226 l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~ 257 (765)
T PF10214_consen 226 LMLIDFESNWQTEYLVTAKTWSWILDVKRSPD 257 (765)
T ss_pred eEEEECCCCCccchhccCCChhheeeEEecCC
Confidence 88999998622 11112334456777777776
No 460
>PRK13684 Ycf48-like protein; Provisional
Probab=44.81 E-value=2.6e+02 Score=25.87 Aligned_cols=100 Identities=11% Similarity=0.143 Sum_probs=55.7
Q ss_pred CceEEEEeCCCCCCeEEEEcCCCcEEE-EecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCC
Q 018235 230 DEGYAIDWNPITTGRLVTGDCNSCIYL-WEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV 308 (359)
Q Consensus 230 ~~v~~l~~sp~~~~~l~sgs~dg~I~l-wd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~ 308 (359)
..++++.+.+++. ++++|. .|.+.. ++- .+..|. .....-...++++.+.|++. +++. +..|.+++=....
T Consensus 173 g~~~~i~~~~~g~-~v~~g~-~G~i~~s~~~-gg~tW~---~~~~~~~~~l~~i~~~~~g~-~~~v-g~~G~~~~~s~d~ 244 (334)
T PRK13684 173 GVVRNLRRSPDGK-YVAVSS-RGNFYSTWEP-GQTAWT---PHQRNSSRRLQSMGFQPDGN-LWML-ARGGQIRFNDPDD 244 (334)
T ss_pred ceEEEEEECCCCe-EEEEeC-CceEEEEcCC-CCCeEE---EeeCCCcccceeeeEcCCCC-EEEE-ecCCEEEEccCCC
Confidence 4678899999875 555554 666543 221 212354 11223446889999999987 5554 4557665322233
Q ss_pred CCCceEEeec----CCCCEEEEEEcCCCCeEEEE
Q 018235 309 GKSALTSFKA----HNADVNVISWNRCWLAVCWH 338 (359)
Q Consensus 309 ~~~~~~~~~~----h~~~V~~i~~s~~~~~l~~~ 338 (359)
+ ..-..+.. -...+..+.|.+++.+++.+
T Consensus 245 G-~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G 277 (334)
T PRK13684 245 L-ESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG 277 (334)
T ss_pred C-CccccccCCccccccceeeEEEcCCCCEEEEc
Confidence 2 11111111 12346778888887766654
No 461
>PHA02713 hypothetical protein; Provisional
Probab=43.81 E-value=3.5e+02 Score=27.12 Aligned_cols=62 Identities=8% Similarity=0.207 Sum_probs=36.4
Q ss_pred eEEEEcCC------CcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCC--cEEEEECCCC
Q 018235 244 RLVTGDCN------SCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG--HIAIWDTRVG 309 (359)
Q Consensus 244 ~l~sgs~d------g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg--~I~iwD~r~~ 309 (359)
+.+.|+.+ ..+..||+.+..+|.. ..++.........+.. .+. +++.|+.++ ++-.||..+.
T Consensus 466 IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~-~~~m~~~r~~~~~~~~--~~~-iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 466 IYVVCDIKDEKNVKTCIFRYNTNTYNGWEL-ITTTESRLSALHTILH--DNT-IMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred EEEEeCCCCCCccceeEEEecCCCCCCeeE-ccccCcccccceeEEE--CCE-EEEEeeecceeehhhcCcccc
Confidence 55556543 2467899976235642 1233333333333443 455 999999888 6777777765
No 462
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=43.46 E-value=81 Score=29.26 Aligned_cols=40 Identities=15% Similarity=0.378 Sum_probs=28.3
Q ss_pred CCeEEEEecCCCCCEEEEE-eCCCcEEEEECCCCCCceEEee
Q 018235 277 ASVEDLQWSPTEPDVFASC-SVDGHIAIWDTRVGKSALTSFK 317 (359)
Q Consensus 277 ~~V~~v~~sp~~~~~las~-s~Dg~I~iwD~r~~~~~~~~~~ 317 (359)
..+.+|+.+.+...+|.+. ..++.|.+||..++ +.+.++.
T Consensus 289 ~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG-k~~~~~~ 329 (342)
T PF06433_consen 289 HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATG-KLVRSIE 329 (342)
T ss_dssp EEESEEEEESSSS-EEEEEETTTTEEEEEETTT---EEEEE-
T ss_pred CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCC-cEEeehh
Confidence 3567889998877677654 46899999999998 7777764
No 463
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=43.39 E-value=1.2e+02 Score=26.23 Aligned_cols=46 Identities=11% Similarity=0.144 Sum_probs=33.0
Q ss_pred EEEEEeCCCcEEEEECCCC-CCceEEeecCCCCEEEEEEcCCCCeEEEE
Q 018235 291 VFASCSVDGHIAIWDTRVG-KSALTSFKAHNADVNVISWNRCWLAVCWH 338 (359)
Q Consensus 291 ~las~s~Dg~I~iwD~r~~-~~~~~~~~~h~~~V~~i~~s~~~~~l~~~ 338 (359)
+|++ ...+.|-+|++... ..++.++. .-+.|..+.++..|.++++-
T Consensus 31 Lfva-~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTl 77 (215)
T PF14761_consen 31 LFVA-ASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTL 77 (215)
T ss_pred EEEE-cCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEE
Confidence 5454 55677999999943 23444554 34779999999999998764
No 464
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=41.49 E-value=62 Score=17.79 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=18.2
Q ss_pred ceeeEEEeCCCCcEEEEEeCCCcEEEEE
Q 018235 167 CVNRIRAMTQNPHICASWADTGHVQVWD 194 (359)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~dg~V~iwd 194 (359)
.|.+|+..+ .++|.+...+.++||.
T Consensus 3 ~i~aia~g~---~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAGD---SWVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEccC---CEEEEEeCCCeEEecC
Confidence 355666544 6888888889999873
No 465
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=41.44 E-value=1.8e+02 Score=30.46 Aligned_cols=101 Identities=12% Similarity=0.113 Sum_probs=58.2
Q ss_pred ceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceec-CccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCC
Q 018235 231 EGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVD-PNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG 309 (359)
Q Consensus 231 ~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~-~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~ 309 (359)
.+.++.+++. -+..|.-||++-.+--.-.+.|-.. ...+.-...+|+...+..+ +.-++.+|.|.++...+.
T Consensus 583 ~v~~l~~ss~---Slgagl~dgt~a~y~rap~gSwd~ep~~~~~~g~lPvrsla~~ed----~~was~gG~V~vi~~tt~ 655 (925)
T KOG3522|consen 583 SVKLLLFSSG---SLGAGLIDGTLAVYGRAPSGSWDGEPNISIPTGSLPVRSLAFQED----FVWASEGGCVHVIPSTTF 655 (925)
T ss_pred hhhhhhcccc---ccccCccCCccccccCCCCCCCCCCCccccccCCccccchhhhhc----eeeeecCCceEEEechhc
Confidence 4555555553 4555666777766543322223211 0111223456777776433 455677899999988775
Q ss_pred CCceEEe---ecCCCCEEEEEEcCCCCeEEEEe
Q 018235 310 KSALTSF---KAHNADVNVISWNRCWLAVCWHL 339 (359)
Q Consensus 310 ~~~~~~~---~~h~~~V~~i~~s~~~~~l~~~~ 339 (359)
...... ..|...|+++...-++-++++..
T Consensus 656 -~~~~~leahqee~~~Vthm~~~~~gVwvafas 687 (925)
T KOG3522|consen 656 -IRSWDLEAHQEEAHSVTHMLYLDNGVWVAFAS 687 (925)
T ss_pred -cccchhHHHHhhcceEEEEEeeCCceEEEEcC
Confidence 333333 34566799998888777776654
No 466
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=40.42 E-value=5.1e+02 Score=28.12 Aligned_cols=35 Identities=14% Similarity=0.284 Sum_probs=26.0
Q ss_pred CCCceeeEEEeC---CCCcEEEEEeCCCcEEEEECCCC
Q 018235 164 HQGCVNRIRAMT---QNPHICASWADTGHVQVWDLRSH 198 (359)
Q Consensus 164 H~~~V~~i~~~p---~~~~~lat~s~dg~V~iwd~~~~ 198 (359)
--|.|.+++.-+ ..+.++|.+++.|.|.|-.+...
T Consensus 58 vFg~Irsla~~~lt~~~kD~LaV~SDSGri~il~y~~e 95 (1205)
T KOG1898|consen 58 VFGTIRSLAAFRLTGGTKDYLAVGSDSGRISILEYNNE 95 (1205)
T ss_pred ehhhhhhhhccccCCCCccEEEEEcCCceEEEEEechh
Confidence 456666665544 34679999999999999988764
No 467
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.71 E-value=3.2e+02 Score=28.29 Aligned_cols=39 Identities=10% Similarity=0.115 Sum_probs=28.2
Q ss_pred CCcEEecCCCCceEEEEeCCCCCCeEEEEcCCCcEEEEecC
Q 018235 220 SPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPA 260 (359)
Q Consensus 220 ~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~ 260 (359)
.++..+.....++-++.|+.+.. |+....+|++++|++-
T Consensus 74 ~lL~~~~w~~~~lI~mgWs~~ee--LI~v~k~g~v~Vy~~~ 112 (829)
T KOG2280|consen 74 QLLGRILWKHGELIGMGWSDDEE--LICVQKDGTVHVYGLL 112 (829)
T ss_pred cchHHHHhcCCCeeeecccCCce--EEEEeccceEEEeecc
Confidence 33433333334788999998874 7777889999999984
No 468
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=39.14 E-value=3.1e+02 Score=25.19 Aligned_cols=179 Identities=9% Similarity=0.038 Sum_probs=91.5
Q ss_pred CCCceeeEEEeCCCCcEEEEEeCCCc------EEEEECCCCccccccccccc--cCCCCCCCCCCCcEEecCCCCceEEE
Q 018235 164 HQGCVNRIRAMTQNPHICASWADTGH------VQVWDLRSHLNALAESETIV--GQGAPQVSNQSPLVKFGGHKDEGYAI 235 (359)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~------V~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~h~~~v~~l 235 (359)
.-|.+..|.+.+.+ ..+++.+++|. ++.+.+.............. .... ..+.+. ..-..-..+|
T Consensus 18 ~~GGlSgl~~~~~~-~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~---~~G~~~---~~~~~D~Egi 90 (326)
T PF13449_consen 18 PFGGLSGLDYDPDD-GRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRD---PDGQPF---PKNGLDPEGI 90 (326)
T ss_pred ccCcEeeEEEeCCC-CEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccC---CCCCcC---CcCCCChhHe
Confidence 45788999999755 45666688888 66666554111000000000 0000 001111 0011133467
Q ss_pred EeCCCCCCeEEEEcCC------CcEEEEecCCCCcce----ecCc--------cccCCCCCeEEEEecCCCCCEEEEEeC
Q 018235 236 DWNPITTGRLVTGDCN------SCIYLWEPASDATWN----VDPN--------PFIGHSASVEDLQWSPTEPDVFASCSV 297 (359)
Q Consensus 236 ~~sp~~~~~l~sgs~d------g~I~lwd~~~~~~~~----~~~~--------~~~~h~~~V~~v~~sp~~~~~las~s~ 297 (359)
++.+++. ++++.-.+ ..|..++.. +... ++.. .-.......++++++|++. .|.++..
T Consensus 91 ~~~~~g~-~~is~E~~~~~~~~p~I~~~~~~--G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~-~l~~~~E 166 (326)
T PF13449_consen 91 AVPPDGS-FWISSEGGRTGGIPPRIRRFDLD--GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGR-TLFAAME 166 (326)
T ss_pred EEecCCC-EEEEeCCccCCCCCCEEEEECCC--CcccceEccccccccccCccccccCCCCeEEEEECCCCC-EEEEEEC
Confidence 7766665 77776666 677777754 3321 1111 1122456899999999998 4443321
Q ss_pred -----CC---------cEEEEECC--CCCCceEEe----ec-----CCCCEEEEEEcCCCCeEEEEeeecc-cceEEEEE
Q 018235 298 -----DG---------HIAIWDTR--VGKSALTSF----KA-----HNADVNVISWNRCWLAVCWHLEVMM-EHFLFMIL 351 (359)
Q Consensus 298 -----Dg---------~I~iwD~r--~~~~~~~~~----~~-----h~~~V~~i~~s~~~~~l~~~~~~~~-~d~~i~iw 351 (359)
|+ .++|+... +...+...+ .. ....|..+.+-+++.+++..-.... .....+|+
T Consensus 167 ~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~ 246 (326)
T PF13449_consen 167 SPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIY 246 (326)
T ss_pred ccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEE
Confidence 22 15555444 321222222 21 3467888999999998876543211 23445555
Q ss_pred eC
Q 018235 352 DC 353 (359)
Q Consensus 352 d~ 353 (359)
.+
T Consensus 247 ~v 248 (326)
T PF13449_consen 247 RV 248 (326)
T ss_pred EE
Confidence 43
No 469
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=38.60 E-value=3.8e+02 Score=26.11 Aligned_cols=35 Identities=9% Similarity=-0.020 Sum_probs=26.3
Q ss_pred ecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCC
Q 018235 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRS 197 (359)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~ 197 (359)
...-..-+.|.|.|++ .++++--..|.|++++-..
T Consensus 26 a~GL~~Pw~maflPDG-~llVtER~~G~I~~v~~~~ 60 (454)
T TIGR03606 26 LSGLNKPWALLWGPDN-QLWVTERATGKILRVNPET 60 (454)
T ss_pred ECCCCCceEEEEcCCC-eEEEEEecCCEEEEEeCCC
Confidence 3345667889999998 7888765579999997544
No 470
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=38.05 E-value=3.7e+02 Score=25.71 Aligned_cols=103 Identities=8% Similarity=0.030 Sum_probs=58.0
Q ss_pred CceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCccee-cCccc--cCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEEC
Q 018235 230 DEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNV-DPNPF--IGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDT 306 (359)
Q Consensus 230 ~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~-~~~~~--~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~ 306 (359)
..++++.|.+++. .++++ ..|.+.. ....+..+.. ..... ......+.++.|.+++. ++ .++..|.+....
T Consensus 281 ~~l~~v~~~~dg~-l~l~g-~~G~l~~-S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~-~~-a~G~~G~v~~s~- 354 (398)
T PLN00033 281 RRIQNMGWRADGG-LWLLT-RGGGLYV-SKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKE-AW-AAGGSGILLRST- 354 (398)
T ss_pred cceeeeeEcCCCC-EEEEe-CCceEEE-ecCCCCcccccceeecccCCCCcceEEEEEcCCCc-EE-EEECCCcEEEeC-
Confidence 4678999998886 55555 5666543 3223222210 00111 11224589999998876 55 455667666553
Q ss_pred CCCCCceEEe---ecCCCCEEEEEEcCCCCeEEEEe
Q 018235 307 RVGKSALTSF---KAHNADVNVISWNRCWLAVCWHL 339 (359)
Q Consensus 307 r~~~~~~~~~---~~h~~~V~~i~~s~~~~~l~~~~ 339 (359)
..+ +.-... ..-...++.+.|.++++.++.+.
T Consensus 355 D~G-~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~ 389 (398)
T PLN00033 355 DGG-KSWKRDKGADNIAANLYSVKFFDDKKGFVLGN 389 (398)
T ss_pred CCC-cceeEccccCCCCcceeEEEEcCCCceEEEeC
Confidence 222 221111 22345688999988888777764
No 471
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=36.11 E-value=69 Score=23.18 Aligned_cols=33 Identities=9% Similarity=0.075 Sum_probs=26.5
Q ss_pred CCceeeEEEeCCCCcEEEEEeCCCcEEEEECCC
Q 018235 165 QGCVNRIRAMTQNPHICASWADTGHVQVWDLRS 197 (359)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~ 197 (359)
-..-|.|.++|++..+.++....+.|++|....
T Consensus 53 ~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 53 FSFANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CCCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 356688899999877788878889999998654
No 472
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=35.96 E-value=5.4e+02 Score=27.02 Aligned_cols=129 Identities=14% Similarity=0.097 Sum_probs=75.0
Q ss_pred CceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEe--cC-CCCceEEEEeCCCCC
Q 018235 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF--GG-HKDEGYAIDWNPITT 242 (359)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-h~~~v~~l~~sp~~~ 242 (359)
.+...++|+|.....||.....|.-.||++....+.....-.. .......+ .. ....-..+.|.++..
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~---------~~~~~gsi~~d~~e~s~w~rI~W~~~~~ 216 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRL---------SRNISGSIIFDPEELSNWKRILWVSDSN 216 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceee---------ccCCCccccCCCcccCcceeeEecCCCC
Confidence 3677899999887899999999999999993211110000000 00000111 00 112345889988877
Q ss_pred CeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCC
Q 018235 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV 308 (359)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~ 308 (359)
.|+.++ ...+.++|+.......+ -........|.+++-+|.....+..- ....|...+++.
T Consensus 217 -~lLv~~-r~~l~~~d~~~~~~~~~--l~~~~~~~~IlDv~~~~~~~~~~FiL-Ts~eiiw~~~~~ 277 (765)
T PF10214_consen 217 -RLLVCN-RSKLMLIDFESNWQTEY--LVTAKTWSWILDVKRSPDNPSHVFIL-TSKEIIWLDVKS 277 (765)
T ss_pred -EEEEEc-CCceEEEECCCCCccch--hccCCChhheeeEEecCCccceEEEE-ecCeEEEEEccC
Confidence 777776 55788999976332110 11223457799999888843222222 235677777776
No 473
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=34.23 E-value=85 Score=17.24 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=17.0
Q ss_pred EEEEEeCCCcEEEEECCCCCCce
Q 018235 291 VFASCSVDGHIAIWDTRVGKSAL 313 (359)
Q Consensus 291 ~las~s~Dg~I~iwD~r~~~~~~ 313 (359)
.+..++.+|.+..+|.+++ +.+
T Consensus 8 ~v~~~~~~g~l~a~d~~~G-~~~ 29 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTG-EIL 29 (33)
T ss_pred EEEEEcCCCEEEEEEcccC-cEE
Confidence 5667788899999999887 443
No 474
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=34.10 E-value=1.8e+02 Score=26.46 Aligned_cols=72 Identities=15% Similarity=0.218 Sum_probs=45.4
Q ss_pred CceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCC-----ceEEEEeCCC
Q 018235 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKD-----EGYAIDWNPI 240 (359)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~l~~sp~ 240 (359)
--||+|.....| .+|+|.-.-..|.+.+-.+ ++.+..+.|... +....+|-.+
T Consensus 144 ~HiNsV~~~~~G-~yLiS~R~~~~i~~I~~~t---------------------G~I~W~lgG~~~~df~~~~~~f~~QHd 201 (299)
T PF14269_consen 144 FHINSVDKDDDG-DYLISSRNTSTIYKIDPST---------------------GKIIWRLGGKRNSDFTLPATNFSWQHD 201 (299)
T ss_pred cEeeeeeecCCc-cEEEEecccCEEEEEECCC---------------------CcEEEEeCCCCCCcccccCCcEeeccC
Confidence 457888888888 7899988888888888665 455555544411 1112344333
Q ss_pred CCCeEEEEcCCCcEEEEecC
Q 018235 241 TTGRLVTGDCNSCIYLWEPA 260 (359)
Q Consensus 241 ~~~~l~sgs~dg~I~lwd~~ 260 (359)
-+ .+-.+..+++|.|+|=.
T Consensus 202 ar-~~~~~~~~~~IslFDN~ 220 (299)
T PF14269_consen 202 AR-FLNESNDDGTISLFDNA 220 (299)
T ss_pred CE-EeccCCCCCEEEEEcCC
Confidence 32 44455678899999863
No 475
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=33.54 E-value=3.4e+02 Score=26.40 Aligned_cols=154 Identities=10% Similarity=-0.008 Sum_probs=80.3
Q ss_pred cCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCC-CCceE-EEEeCCC
Q 018235 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGH-KDEGY-AIDWNPI 240 (359)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~-~l~~sp~ 240 (359)
.-...|..+-..|++. .+..-+. .++.|+++.+.....+ +.+..-.+. ...|. ++..-.-
T Consensus 218 ~~~~~v~qllL~Pdg~-~LYv~~g-~~~~v~~L~~r~l~~r----------------kl~~dspg~~~~~Vte~l~lL~G 279 (733)
T COG4590 218 VPFSDVSQLLLTPDGK-TLYVRTG-SELVVALLDKRSLQIR----------------KLVDDSPGDSRHQVTEQLYLLSG 279 (733)
T ss_pred CCccchHhhEECCCCC-EEEEecC-CeEEEEeecccccchh----------------hhhhcCCCchHHHHHHHHHHHhC
Confidence 3456778888899994 4433332 6788888876321110 000000000 00111 1111111
Q ss_pred CCCeEEEEcCCCcEEEE-ecCCCCccee-cCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeec
Q 018235 241 TTGRLVTGDCNSCIYLW-EPASDATWNV-DPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA 318 (359)
Q Consensus 241 ~~~~l~sgs~dg~I~lw-d~~~~~~~~~-~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~ 318 (359)
+. -|+.++.||.|.-| |.+..+++.. ..+.+.-....|.-+.=..+.+ .|++-+..|.+.++..... +.+..-..
T Consensus 280 g~-SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rk-gF~~l~~~G~L~~f~st~~-~~lL~~~~ 356 (733)
T COG4590 280 GF-SLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRK-GFYSLYRNGTLQSFYSTSE-KLLLFERA 356 (733)
T ss_pred ce-eEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccc-eEEEEcCCCceeeeecccC-cceehhhh
Confidence 22 57778889998777 6665443221 0122222223443333222233 7888889999998877664 33322222
Q ss_pred CCCCEEEEEEcCCCCeEEEE
Q 018235 319 HNADVNVISWNRCWLAVCWH 338 (359)
Q Consensus 319 h~~~V~~i~~s~~~~~l~~~ 338 (359)
-..+..+.++|.+.+++..
T Consensus 357 -~~~~~~~~~Sp~~~~Ll~e 375 (733)
T COG4590 357 -YQAPQLVAMSPNQAYLLSE 375 (733)
T ss_pred -hcCcceeeeCcccchheee
Confidence 2256778999998877765
No 476
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=31.67 E-value=2.3e+02 Score=29.55 Aligned_cols=92 Identities=12% Similarity=0.274 Sum_probs=51.5
Q ss_pred EEEEeCCCCCCeEEEEcCCC-----cEEEEecCCC--CcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEE
Q 018235 233 YAIDWNPITTGRLVTGDCNS-----CIYLWEPASD--ATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWD 305 (359)
Q Consensus 233 ~~l~~sp~~~~~l~sgs~dg-----~I~lwd~~~~--~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD 305 (359)
+.|+|-|+|. .++|-..|| .|.++..+-- +..- .-.+-...+..++|+-... ++| .+....|.+|-
T Consensus 250 ~~LSWkpqgS-~~ati~td~~~~S~~ViFfErNGLrHGef~----lr~~~dEk~~~~~wn~~s~-vla-v~~~n~~~lwt 322 (1243)
T COG5290 250 HQLSWKPQGS-KYATIGTDGCSTSESVIFFERNGLRHGEFD----LRVGCDEKAFLENWNLLST-VLA-VAEGNLLKLWT 322 (1243)
T ss_pred hccccccCCc-eeeeeccCCCCCcceEEEEccCCcccCCcc----ccCCchhhhhhhhhhHHHH-HHH-HhhcceEEEEE
Confidence 3589999998 999876444 2444443210 1110 1112334566778876665 444 34556899998
Q ss_pred CCCCCCceEEeecCCCCEEEEEEcCCC
Q 018235 306 TRVGKSALTSFKAHNADVNVISWNRCW 332 (359)
Q Consensus 306 ~r~~~~~~~~~~~h~~~V~~i~~s~~~ 332 (359)
..+. .-.......-..+.-+.|+|..
T Consensus 323 tkNy-hWYLK~e~~ip~~s~vkwhpe~ 348 (1243)
T COG5290 323 TKNY-HWYLKVERQIPGISYVKWHPEE 348 (1243)
T ss_pred ccce-EEEEEEeecCCCcceeeecccc
Confidence 8765 3222332233445667777743
No 477
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=31.58 E-value=1.1e+02 Score=17.81 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=19.9
Q ss_pred EEEEEeCCCcEEEEECCCCCCceEEee
Q 018235 291 VFASCSVDGHIAIWDTRVGKSALTSFK 317 (359)
Q Consensus 291 ~las~s~Dg~I~iwD~r~~~~~~~~~~ 317 (359)
.+..++.+|.|.-.|.+++ +.+..+.
T Consensus 2 ~v~~~~~~g~l~AlD~~TG-~~~W~~~ 27 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTG-KVLWKFQ 27 (38)
T ss_dssp EEEEETTTSEEEEEETTTT-SEEEEEE
T ss_pred EEEEeCCCCEEEEEECCCC-CEEEeee
Confidence 3455589999999999998 6666653
No 478
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=31.08 E-value=97 Score=30.83 Aligned_cols=34 Identities=6% Similarity=0.251 Sum_probs=22.8
Q ss_pred CceeeEEEeC---CCCcEEEEEeCCCcEEEEECCCCc
Q 018235 166 GCVNRIRAMT---QNPHICASWADTGHVQVWDLRSHL 199 (359)
Q Consensus 166 ~~V~~i~~~p---~~~~~lat~s~dg~V~iwd~~~~~ 199 (359)
+.+..+.+.+ .+..++++-+.|+++++||+.+..
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~ 251 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQ 251 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTC
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCe
Confidence 3444555554 134789899999999999999843
No 479
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=30.15 E-value=1.6e+02 Score=30.42 Aligned_cols=66 Identities=15% Similarity=0.207 Sum_probs=40.6
Q ss_pred ceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEE
Q 018235 231 EGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWD 305 (359)
Q Consensus 231 ~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD 305 (359)
.+.++.-+|-+. -+++++.||+|.+|+.....+. . +..-..+-+.+.|...| |++...|+.+--|-
T Consensus 16 ~~~aiqshp~~~-s~v~~~~d~si~lfn~~~r~qs----k-i~~~~~p~~nlv~tnhg---l~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 16 FTTAIQSHPGGQ-SFVLAHQDGSIILFNFIPRRQS----K-ICEEAKPKENLVFTNHG---LVTATSDRRALAWK 81 (1636)
T ss_pred eeeeeeecCCCc-eEEEEecCCcEEEEeecccchh----h-hhhhcCCccceeeeccc---eEEEeccchhheee
Confidence 456788889887 8999999999999987542211 1 11122233445554333 45566666666664
No 480
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=29.79 E-value=34 Score=34.33 Aligned_cols=94 Identities=13% Similarity=0.185 Sum_probs=56.6
Q ss_pred eEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeecCCCCE
Q 018235 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADV 323 (359)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V 323 (359)
.+++|-|.|...+|-....+..- ..+.+..+.+.++...++.. +.+=|+.+. ..+..+++|..++
T Consensus 254 ~~isglc~g~~~~g~gpglgg~~---~~~vGrvg~vsaesV~g~~~-----------vivkdf~S~-a~i~QfkAhkspi 318 (788)
T KOG2109|consen 254 VLISGLCRGSYQIGTGPGLGGFE---EVLVGRVGPVSAESVLGNNL-----------VIVKDFDSF-ADIRQFKAHKSPI 318 (788)
T ss_pred HHHHHHhhcccCCCCCCCCCCcC---ceeccccccccceeecccce-----------EEeecccch-hhhhheeeecCcc
Confidence 44555555555555443322211 12344455555554433332 233355554 4566788999999
Q ss_pred EEEEEcCCCCeEEEEeeecccceEEEEEe
Q 018235 324 NVISWNRCWLAVCWHLEVMMEHFLFMILD 352 (359)
Q Consensus 324 ~~i~~s~~~~~l~~~~~~~~~d~~i~iwd 352 (359)
..++|.+.+.+++...-.+..-+.+|+..
T Consensus 319 SaLcfdqsgsllViasi~g~nVnvfRime 347 (788)
T KOG2109|consen 319 SALCFDQSGSLLVIASITGRNVNVFRIME 347 (788)
T ss_pred cccccccCceEEEEEeeccceeeeEEecc
Confidence 99999999999988877655566666654
No 481
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=28.94 E-value=79 Score=23.02 Aligned_cols=52 Identities=15% Similarity=0.180 Sum_probs=29.6
Q ss_pred EEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcE
Q 018235 245 LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHI 301 (359)
Q Consensus 245 l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I 301 (359)
++.+..+|.+..||+.+ ++.. .+...-.--+.|+.+|++.++|++=..-..|
T Consensus 30 ~le~~~~GRll~ydp~t-~~~~----vl~~~L~fpNGVals~d~~~vlv~Et~~~Ri 81 (89)
T PF03088_consen 30 LLEGRPTGRLLRYDPST-KETT----VLLDGLYFPNGVALSPDESFVLVAETGRYRI 81 (89)
T ss_dssp HHHT---EEEEEEETTT-TEEE----EEEEEESSEEEEEE-TTSSEEEEEEGGGTEE
T ss_pred eecCCCCcCEEEEECCC-CeEE----EehhCCCccCeEEEcCCCCEEEEEeccCceE
Confidence 44456678888999987 3322 1222223568899999999666665444433
No 482
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=28.22 E-value=83 Score=18.51 Aligned_cols=18 Identities=28% Similarity=0.584 Sum_probs=14.3
Q ss_pred CeEEEEcCCCcEEEEecC
Q 018235 243 GRLVTGDCNSCIYLWEPA 260 (359)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~ 260 (359)
+.++.++.||.++.+|.+
T Consensus 22 g~vyv~~~dg~l~ald~~ 39 (40)
T PF13570_consen 22 GRVYVGTGDGNLYALDAA 39 (40)
T ss_dssp SEEEEE-TTSEEEEEETT
T ss_pred CEEEEEcCCCEEEEEeCC
Confidence 378888889999999875
No 483
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=28.00 E-value=4.5e+02 Score=28.05 Aligned_cols=79 Identities=15% Similarity=0.098 Sum_probs=50.7
Q ss_pred CcEEEEecCCCCcceecCccc-cCCCCCeEEEEecCCCCCEEEE-EeCCC-----cEEEEECCCCCCceEEeecCCCCEE
Q 018235 252 SCIYLWEPASDATWNVDPNPF-IGHSASVEDLQWSPTEPDVFAS-CSVDG-----HIAIWDTRVGKSALTSFKAHNADVN 324 (359)
Q Consensus 252 g~I~lwd~~~~~~~~~~~~~~-~~h~~~V~~v~~sp~~~~~las-~s~Dg-----~I~iwD~r~~~~~~~~~~~h~~~V~ 324 (359)
+.|.+-|... ... +.+ ..+..+|..-.|||+|+ .||- .+-.+ .|.+-|+++...-+..+...++.|.
T Consensus 329 ~~L~~~D~dG-~n~----~~ve~~~~~~i~sP~~SPDG~-~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~aaip 402 (912)
T TIGR02171 329 GNLAYIDYTK-GAS----RAVEIEDTISVYHPDISPDGK-KVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENAAIP 402 (912)
T ss_pred CeEEEEecCC-CCc----eEEEecCCCceecCcCCCCCC-EEEEEEeecCCCCCceEEEEehhccCCCceEeeccccccc
Confidence 4677767644 222 223 45678888899999999 5555 34333 4888899987455556666666666
Q ss_pred EEEEcCCCCeEE
Q 018235 325 VISWNRCWLAVC 336 (359)
Q Consensus 325 ~i~~s~~~~~l~ 336 (359)
.-....+|..++
T Consensus 403 rwrv~e~gdt~i 414 (912)
T TIGR02171 403 RWRVLENGDTVI 414 (912)
T ss_pred ceEecCCCCeEE
Confidence 555566665443
No 484
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=27.17 E-value=4.8e+02 Score=23.71 Aligned_cols=157 Identities=13% Similarity=0.046 Sum_probs=81.5
Q ss_pred CceeeEEEeCCCCcEEEEEeCCCcEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeE
Q 018235 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRL 245 (359)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l 245 (359)
+.-..++-.|+| .+-.++...|.|--.|-.+ ++....-.+....-+++..-|++. ..
T Consensus 62 ~ap~dvapapdG-~VWft~qg~gaiGhLdP~t---------------------Gev~~ypLg~Ga~Phgiv~gpdg~-~W 118 (353)
T COG4257 62 SAPFDVAPAPDG-AVWFTAQGTGAIGHLDPAT---------------------GEVETYPLGSGASPHGIVVGPDGS-AW 118 (353)
T ss_pred CCccccccCCCC-ceEEecCccccceecCCCC---------------------CceEEEecCCCCCCceEEECCCCC-ee
Confidence 344556667777 5666666556555455444 333333334444556777788876 44
Q ss_pred EEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCCCceEEeec-CCCCEE
Q 018235 246 VTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA-HNADVN 324 (359)
Q Consensus 246 ~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~-h~~~V~ 324 (359)
++-+.. .|.-.|.++...... .-+...-....+...|.+.|. +..++.. |.---.|-.. ..+..+.+ ....-+
T Consensus 119 itd~~~-aI~R~dpkt~evt~f-~lp~~~a~~nlet~vfD~~G~-lWFt~q~-G~yGrLdPa~--~~i~vfpaPqG~gpy 192 (353)
T COG4257 119 ITDTGL-AIGRLDPKTLEVTRF-PLPLEHADANLETAVFDPWGN-LWFTGQI-GAYGRLDPAR--NVISVFPAPQGGGPY 192 (353)
T ss_pred EecCcc-eeEEecCcccceEEe-ecccccCCCcccceeeCCCcc-EEEeecc-ccceecCccc--CceeeeccCCCCCCc
Confidence 433322 555566654221110 012222346778889999998 7777652 1111111111 22333321 233456
Q ss_pred EEEEcCCCCeEEEEeeecccceEEEEEeCcC
Q 018235 325 VISWNRCWLAVCWHLEVMMEHFLFMILDCSR 355 (359)
Q Consensus 325 ~i~~s~~~~~l~~~~~~~~~d~~i~iwd~~~ 355 (359)
.|+-+|+|++-...+. ++.|-..|..+
T Consensus 193 Gi~atpdGsvwyasla----gnaiaridp~~ 219 (353)
T COG4257 193 GICATPDGSVWYASLA----GNAIARIDPFA 219 (353)
T ss_pred ceEECCCCcEEEEecc----ccceEEccccc
Confidence 7788888887766655 44455555443
No 485
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=26.51 E-value=6.5e+02 Score=25.03 Aligned_cols=68 Identities=13% Similarity=0.163 Sum_probs=35.9
Q ss_pred eEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecC---CCCCEEEEEe-----CCCcEEEEECCCCCCceEE
Q 018235 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSP---TEPDVFASCS-----VDGHIAIWDTRVGKSALTS 315 (359)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp---~~~~~las~s-----~Dg~I~iwD~r~~~~~~~~ 315 (359)
.++.++.++.|...|..+ ++.+-. .....+... ..+.-+| .+. +++..+ .+|.|.-+|.+++ +.+..
T Consensus 122 ~v~v~t~dg~l~ALDa~T-Gk~~W~-~~~~~~~~~-~~~tssP~v~~g~-Vivg~~~~~~~~~G~v~AlD~~TG-~~lW~ 196 (527)
T TIGR03075 122 KVFFGTLDARLVALDAKT-GKVVWS-KKNGDYKAG-YTITAAPLVVKGK-VITGISGGEFGVRGYVTAYDAKTG-KLVWR 196 (527)
T ss_pred EEEEEcCCCEEEEEECCC-CCEEee-ccccccccc-ccccCCcEEECCE-EEEeecccccCCCcEEEEEECCCC-ceeEe
Confidence 677788899999999877 443210 111111100 0111122 233 443322 3688999999988 54444
Q ss_pred e
Q 018235 316 F 316 (359)
Q Consensus 316 ~ 316 (359)
+
T Consensus 197 ~ 197 (527)
T TIGR03075 197 R 197 (527)
T ss_pred c
Confidence 3
No 486
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=25.62 E-value=9e+02 Score=26.37 Aligned_cols=96 Identities=10% Similarity=0.053 Sum_probs=51.1
Q ss_pred ceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCCC
Q 018235 231 EGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK 310 (359)
Q Consensus 231 ~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~ 310 (359)
++.-++.+|... ++++|- ...+++|++-. .+.+. ...+..-...|..++|- +. .++.|...-++.++-.|...
T Consensus 935 ~~~v~Ai~~f~~-~~Lagv-G~~l~~YdlG~-K~lLR-k~e~k~~p~~Is~iqt~--~~-RI~VgD~qeSV~~~~y~~~~ 1007 (1205)
T KOG1898|consen 935 PGPVGAICPFQG-RVLAGV-GRFLRLYDLGK-KKLLR-KCELKFIPNRISSIQTY--GA-RIVVGDIQESVHFVRYRRED 1007 (1205)
T ss_pred CccceEEeccCC-EEEEec-ccEEEEeeCCh-HHHHh-hhhhccCceEEEEEeec--ce-EEEEeeccceEEEEEEecCC
Confidence 344456777775 666654 56899999965 33221 11222235677788874 33 56666655556655555443
Q ss_pred CceEEee--cCCCCEEEEEEcCCCC
Q 018235 311 SALTSFK--AHNADVNVISWNRCWL 333 (359)
Q Consensus 311 ~~~~~~~--~h~~~V~~i~~s~~~~ 333 (359)
..+..+. .-.-.|+++.+-..+.
T Consensus 1008 n~l~~fadD~~pR~Vt~~~~lD~~t 1032 (1205)
T KOG1898|consen 1008 NQLIVFADDPVPRHVTALELLDYDT 1032 (1205)
T ss_pred CeEEEEeCCCccceeeEEEEecCCc
Confidence 4444442 1222355554443333
No 487
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=24.74 E-value=2.4e+02 Score=26.96 Aligned_cols=20 Identities=0% Similarity=-0.245 Sum_probs=16.5
Q ss_pred CCEEEEEEcCCCCeEEEEee
Q 018235 321 ADVNVISWNRCWLAVCWHLE 340 (359)
Q Consensus 321 ~~V~~i~~s~~~~~l~~~~~ 340 (359)
..+..|.--++|.+++.+..
T Consensus 367 gR~~dV~v~~DGallv~~D~ 386 (399)
T COG2133 367 GRPRDVAVAPDGALLVLTDQ 386 (399)
T ss_pred CcccceEECCCCeEEEeecC
Confidence 67888889999998888754
No 488
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=23.72 E-value=8.6e+02 Score=25.49 Aligned_cols=71 Identities=11% Similarity=0.057 Sum_probs=45.6
Q ss_pred CceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceec---------Cccc--c----CCCCCeEEEEecCCCCCEEEE
Q 018235 230 DEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVD---------PNPF--I----GHSASVEDLQWSPTEPDVFAS 294 (359)
Q Consensus 230 ~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~---------~~~~--~----~h~~~V~~v~~sp~~~~~las 294 (359)
..|.++.-...+. .++..-.||+|.++|..+-...... ...+ . .+-..+..++|||++. .++.
T Consensus 260 ~~V~si~~~~~~~-~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c-~~v~ 337 (753)
T PF11635_consen 260 KRVVSITSPELDI-VVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMC-SLVQ 337 (753)
T ss_pred CeEEEEEecccCc-EEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccc-eEEE
Confidence 3577787777776 8888999999999987652111000 0000 0 1112445688999998 7777
Q ss_pred EeCCCcEE
Q 018235 295 CSVDGHIA 302 (359)
Q Consensus 295 ~s~Dg~I~ 302 (359)
-..+|.+.
T Consensus 338 ~~~~~~~~ 345 (753)
T PF11635_consen 338 IDEDGKTK 345 (753)
T ss_pred EecCCCce
Confidence 78888755
No 489
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=23.62 E-value=1.6e+02 Score=30.49 Aligned_cols=33 Identities=18% Similarity=0.235 Sum_probs=27.7
Q ss_pred CCCeEEEEecCCCCCEEEEEeCCCcEEEEECCCC
Q 018235 276 SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG 309 (359)
Q Consensus 276 ~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~ 309 (359)
...+.+|+-+|.+. -|++++.||+|++|+.-..
T Consensus 14 ~e~~~aiqshp~~~-s~v~~~~d~si~lfn~~~r 46 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQ-SFVLAHQDGSIILFNFIPR 46 (1636)
T ss_pred cceeeeeeecCCCc-eEEEEecCCcEEEEeeccc
Confidence 34677889899998 8999999999999987543
No 490
>PF10636 hemP: Hemin uptake protein hemP; InterPro: IPR019600 This entry represents bacterial proteins that are involved in the uptake of the iron source hemin []. ; PDB: 2JRA_B 2LOJ_A.
Probab=22.84 E-value=1.6e+02 Score=17.75 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=18.9
Q ss_pred EEecCCCceeeEEEeCCCCcEEEE
Q 018235 160 RKVAHQGCVNRIRAMTQNPHICAS 183 (359)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat 183 (359)
..+.|.|.+.+++...+| .++.|
T Consensus 15 v~I~H~g~~Y~LR~Tr~g-KLILT 37 (38)
T PF10636_consen 15 VRIEHGGQIYRLRITRQG-KLILT 37 (38)
T ss_dssp EEEEETTEEEEEEEETTT-EEEEE
T ss_pred EEEEeCCeEEEeeEccCC-cEEEc
Confidence 356899999999999998 66655
No 491
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=22.41 E-value=6.1e+02 Score=23.24 Aligned_cols=107 Identities=15% Similarity=0.183 Sum_probs=63.1
Q ss_pred CceEEEEeCCCCCCeEEEEcCCCc------EEEEecCCCC----cce-ecCcccc--------CCCCCeEEEEecCCCCC
Q 018235 230 DEGYAIDWNPITTGRLVTGDCNSC------IYLWEPASDA----TWN-VDPNPFI--------GHSASVEDLQWSPTEPD 290 (359)
Q Consensus 230 ~~v~~l~~sp~~~~~l~sgs~dg~------I~lwd~~~~~----~~~-~~~~~~~--------~h~~~V~~v~~sp~~~~ 290 (359)
+...+|.+.+.+. .+++.+.+|. +..+.+.... ... .....+. .-....++|++.+++.
T Consensus 20 GGlSgl~~~~~~~-~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~- 97 (326)
T PF13449_consen 20 GGLSGLDYDPDDG-RFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS- 97 (326)
T ss_pred CcEeeEEEeCCCC-EEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC-
Confidence 3567899987554 7777777877 6666554311 100 0011111 1122567899977776
Q ss_pred EEEEEeCC------CcEEEEECCCCCCceEEe---------------ecCCCCEEEEEEcCCCCeEEEEee
Q 018235 291 VFASCSVD------GHIAIWDTRVGKSALTSF---------------KAHNADVNVISWNRCWLAVCWHLE 340 (359)
Q Consensus 291 ~las~s~D------g~I~iwD~r~~~~~~~~~---------------~~h~~~V~~i~~s~~~~~l~~~~~ 340 (359)
++++--.+ ..|+.++.. + ..+..+ ...+...-.|+++|+|..|.....
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G-~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-G-RVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-C-cccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 77776666 778888866 3 222222 123456789999999996555443
No 492
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=22.03 E-value=7.9e+02 Score=24.43 Aligned_cols=27 Identities=22% Similarity=0.442 Sum_probs=22.3
Q ss_pred EEEEEeCCCcEEEEECCCCCCceEEeec
Q 018235 291 VFASCSVDGHIAIWDTRVGKSALTSFKA 318 (359)
Q Consensus 291 ~las~s~Dg~I~iwD~r~~~~~~~~~~~ 318 (359)
+++.++.+|.++.+|.+++ +.+..+..
T Consensus 474 lvf~g~~~G~l~a~D~~TG-e~lw~~~~ 500 (527)
T TIGR03075 474 LVFYGTLEGYFKAFDAKTG-EELWKFKT 500 (527)
T ss_pred EEEEECCCCeEEEEECCCC-CEeEEEeC
Confidence 6677888999999999999 77777643
No 493
>PF08149 BING4CT: BING4CT (NUC141) domain; InterPro: IPR012952 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This C-terminal domain is found in the BING4 family of nucleolar WD40 repeat proteins [].
Probab=21.26 E-value=1.2e+02 Score=21.56 Aligned_cols=29 Identities=28% Similarity=0.415 Sum_probs=23.4
Q ss_pred CCCCeEEEEecCCCCCEEEEEeCCCcEEEE
Q 018235 275 HSASVEDLQWSPTEPDVFASCSVDGHIAIW 304 (359)
Q Consensus 275 h~~~V~~v~~sp~~~~~las~s~Dg~I~iw 304 (359)
....|.+++|+|.+. +|+.|...|.-.|.
T Consensus 8 ~~~~v~~~~F~PfED-vLgvGh~~G~sSii 36 (80)
T PF08149_consen 8 PGSPVESLRFCPFED-VLGVGHSKGFSSII 36 (80)
T ss_pred CCCeeeeeEEechHH-eeEeeccCceeEEe
Confidence 357899999999998 99988887765554
No 494
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=21.25 E-value=6.2e+02 Score=22.92 Aligned_cols=36 Identities=11% Similarity=0.114 Sum_probs=26.0
Q ss_pred ecCCCceeeEEEeCCCCcEEEEEeCCCcEEEEECCC
Q 018235 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRS 197 (359)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~ 197 (359)
+.+...|..+...+..+.+++-.+....++++++..
T Consensus 39 l~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~ 74 (302)
T smart00036 39 LIGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSA 74 (302)
T ss_pred ecCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHH
Confidence 356778999999988744444455555699999965
No 495
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=21.12 E-value=3e+02 Score=28.86 Aligned_cols=74 Identities=9% Similarity=0.095 Sum_probs=46.0
Q ss_pred CCceEEEEeCCCCCCeEEEEcCCCcEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCcEEEEECCC
Q 018235 229 KDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV 308 (359)
Q Consensus 229 ~~~v~~l~~sp~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~ 308 (359)
..++.++.+..+ ++-|+++|.|+++...+. ...........|...|+.+...-++ ++++-...-.+++++..+
T Consensus 626 ~lPvrsla~~ed----~~was~gG~V~vi~~tt~-~~~~~leahqee~~~Vthm~~~~~g--VwvafasG~~~rlfhtet 698 (925)
T KOG3522|consen 626 SLPVRSLAFQED----FVWASEGGCVHVIPSTTF-IRSWDLEAHQEEAHSVTHMLYLDNG--VWVAFASGDEERLFHTET 698 (925)
T ss_pred Cccccchhhhhc----eeeeecCCceEEEechhc-cccchhHHHHhhcceEEEEEeeCCc--eEEEEcCCCEEEEecccc
Confidence 346666666543 455677999999987652 1111112334566789999887766 555555545677777665
Q ss_pred C
Q 018235 309 G 309 (359)
Q Consensus 309 ~ 309 (359)
.
T Consensus 699 l 699 (925)
T KOG3522|consen 699 L 699 (925)
T ss_pred c
Confidence 5
No 496
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=20.70 E-value=71 Score=28.19 Aligned_cols=19 Identities=16% Similarity=0.555 Sum_probs=10.1
Q ss_pred hHhhhhhccccc-CcceeEE
Q 018235 55 TAYNSLHAFHIG-WPCLSFD 73 (359)
Q Consensus 55 ~~Y~~~~~~~~~-wP~ls~~ 73 (359)
.-|..+.-..|+ |.||-+.
T Consensus 170 E~~KC~SCNrlGq~sCLRCK 189 (314)
T PF06524_consen 170 ETFKCQSCNRLGQYSCLRCK 189 (314)
T ss_pred ccccccccccccchhhhhee
Confidence 345555555554 6666554
No 497
>PHA02790 Kelch-like protein; Provisional
Probab=20.39 E-value=8.1e+02 Score=23.91 Aligned_cols=146 Identities=8% Similarity=-0.134 Sum_probs=0.0
Q ss_pred CCcEEEEEeCCC-----cEEEEECCCCccccccccccccCCCCCCCCCCCcEEecCCCCceEEEEeCCCCCCeEEEEcCC
Q 018235 177 NPHICASWADTG-----HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCN 251 (359)
Q Consensus 177 ~~~~lat~s~dg-----~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~sp~~~~~l~sgs~d 251 (359)
+..+++.|+.++ .+..||... ..-...-.-.......-...-++. +.+.|+.+
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~---------------------~~W~~~~~m~~~r~~~~~v~~~~~-iYviGG~~ 328 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYIS---------------------NNWIPIPPMNSPRLYASGVPANNK-LYVVGGLP 328 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCC---------------------CEEEECCCCCchhhcceEEEECCE-EEEECCcC
Q ss_pred C--cEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCCCc---EEEEECCCCCCceEEeecCCCCEEEE
Q 018235 252 S--CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGH---IAIWDTRVGKSALTSFKAHNADVNVI 326 (359)
Q Consensus 252 g--~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~---I~iwD~r~~~~~~~~~~~h~~~V~~i 326 (359)
+ .+..||+.+ ++|. ..-.-.........-.-++. +.+.|+.++. +-.||.++. .-...-......-...
T Consensus 329 ~~~sve~ydp~~-n~W~---~~~~l~~~r~~~~~~~~~g~-IYviGG~~~~~~~ve~ydp~~~-~W~~~~~m~~~r~~~~ 402 (480)
T PHA02790 329 NPTSVERWFHGD-AAWV---NMPSLLKPRCNPAVASINNV-IYVIGGHSETDTTTEYLLPNHD-QWQFGPSTYYPHYKSC 402 (480)
T ss_pred CCCceEEEECCC-CeEE---ECCCCCCCCcccEEEEECCE-EEEecCcCCCCccEEEEeCCCC-EEEeCCCCCCccccce
Q ss_pred EEcCCCCeEEEEeeecccceEEEEEeCcCCc
Q 018235 327 SWNRCWLAVCWHLEVMMEHFLFMILDCSRGE 357 (359)
Q Consensus 327 ~~s~~~~~l~~~~~~~~~d~~i~iwd~~~g~ 357 (359)
.-.-++.+.+.+.. ..++++.++.
T Consensus 403 ~~~~~~~IYv~GG~-------~e~ydp~~~~ 426 (480)
T PHA02790 403 ALVFGRRLFLVGRN-------AEFYCESSNT 426 (480)
T ss_pred EEEECCEEEEECCc-------eEEecCCCCc
No 498
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=20.24 E-value=7.4e+02 Score=23.43 Aligned_cols=52 Identities=8% Similarity=-0.150 Sum_probs=32.7
Q ss_pred eCCCcEEEEECCCCCCceEEeecCCCCEEEEEEcCCCCeEEEEeeecccceEEEEE
Q 018235 296 SVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRCWLAVCWHLEVMMEHFLFMIL 351 (359)
Q Consensus 296 s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~s~~~~~l~~~~~~~~~d~~i~iw 351 (359)
..+|.+--||..+. ....+..--...|.++.+|++.++++.-.. .-.+.+.|
T Consensus 196 ~~~GRl~~YD~~tK--~~~VLld~L~F~NGlaLS~d~sfvl~~Et~--~~ri~ryw 247 (376)
T KOG1520|consen 196 DPTGRLFRYDPSTK--VTKVLLDGLYFPNGLALSPDGSFVLVAETT--TARIKRYW 247 (376)
T ss_pred CCccceEEecCccc--chhhhhhcccccccccCCCCCCEEEEEeec--cceeeeeE
Confidence 35677777887764 333333333456889999999998876332 13455666
No 499
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=20.23 E-value=9e+02 Score=24.37 Aligned_cols=61 Identities=10% Similarity=0.265 Sum_probs=34.3
Q ss_pred eEEEEcCCC-----cEEEEecCCCCcceecCccccCCCCCeEEEEecCCCCCEEEEEeCC------CcEEEEECCCC
Q 018235 244 RLVTGDCNS-----CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD------GHIAIWDTRVG 309 (359)
Q Consensus 244 ~l~sgs~dg-----~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D------g~I~iwD~r~~ 309 (359)
+.|.|+.|| +|-.||+.+ .+|... .++......+..+.+ .+. +.+.|+.+ .++..||..+.
T Consensus 383 iYavGG~dg~~~l~svE~YDp~~-~~W~~v-a~m~~~r~~~gv~~~--~g~-iYi~GG~~~~~~~l~sve~YDP~t~ 454 (571)
T KOG4441|consen 383 LYAVGGFDGEKSLNSVECYDPVT-NKWTPV-APMLTRRSGHGVAVL--GGK-LYIIGGGDGSSNCLNSVECYDPETN 454 (571)
T ss_pred EEEEeccccccccccEEEecCCC-Cccccc-CCCCcceeeeEEEEE--CCE-EEEEcCcCCCccccceEEEEcCCCC
Confidence 677787775 467789877 666421 112212222222222 344 88888744 44667787765
Done!