Query 018238
Match_columns 359
No_of_seqs 189 out of 243
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 12:05:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018238.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018238hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dh3_A Transcription factor CR 99.0 3E-10 1E-14 84.5 6.1 44 78-124 1-44 (55)
2 2dgc_A Protein (GCN4); basic d 98.6 5.4E-08 1.8E-12 74.2 5.8 42 75-119 6-47 (63)
3 1jnm_A Proto-oncogene C-JUN; B 98.3 6.8E-07 2.3E-11 67.4 6.1 40 78-120 1-40 (62)
4 2wt7_A Proto-oncogene protein 98.3 1.8E-06 6.3E-11 65.4 6.9 40 78-120 2-41 (63)
5 1t2k_D Cyclic-AMP-dependent tr 98.3 1.5E-06 5.1E-11 65.3 6.1 38 79-119 2-39 (61)
6 1gd2_E Transcription factor PA 98.0 5.2E-06 1.8E-10 64.6 4.9 39 79-120 9-47 (70)
7 2y39_A Nickel and cobalt resis 97.4 0.0025 8.6E-08 54.1 12.6 97 233-340 13-112 (118)
8 1ci6_A Transcription factor AT 97.1 0.00045 1.5E-08 52.3 4.7 38 79-119 3-40 (63)
9 3a5t_A Transcription factor MA 96.2 0.0014 4.6E-08 54.9 1.4 43 77-122 36-78 (107)
10 1gu4_A CAAT/enhancer binding p 96.0 0.02 6.9E-07 45.2 7.4 45 72-119 9-53 (78)
11 1hjb_A Ccaat/enhancer binding 95.5 0.042 1.4E-06 44.2 7.3 45 72-119 9-53 (87)
12 3itf_A Periplasmic adaptor pro 95.3 0.097 3.3E-06 45.6 9.5 97 241-348 45-142 (145)
13 2wt7_B Transcription factor MA 91.0 0.61 2.1E-05 37.7 6.9 44 76-122 25-68 (90)
14 3oeo_A Spheroplast protein Y; 87.1 0.24 8.1E-06 42.4 1.9 98 237-345 30-127 (138)
15 3lay_A Zinc resistance-associa 86.0 5.7 0.0002 35.4 10.4 76 240-322 66-141 (175)
16 3o39_A Periplasmic protein rel 84.3 1.4 4.9E-05 36.4 5.2 83 241-334 17-100 (108)
17 1skn_P DNA-binding domain of S 79.9 0.87 3E-05 36.9 2.3 29 77-105 61-89 (92)
18 2ksd_A Aerobic respiration con 67.8 0.3 1E-05 41.2 -3.4 30 100-129 76-105 (115)
19 2er8_A Regulatory protein Leu3 62.4 3.8 0.00013 30.1 2.1 23 97-122 47-69 (72)
20 1zme_C Proline utilization tra 62.0 7.7 0.00026 28.1 3.7 23 98-123 43-65 (70)
21 2c9l_Y EB1, zebra, BZLF1 trans 59.7 11 0.00038 27.9 4.1 39 81-122 4-42 (63)
22 3he4_B Synzip5; heterodimeric 55.3 16 0.00056 25.3 4.1 27 97-123 8-34 (46)
23 1hwt_C Protein (heme activator 54.3 6.1 0.00021 29.5 2.1 27 92-121 51-77 (81)
24 2kz5_A Transcription factor NF 49.2 2.6 9E-05 34.1 -0.8 21 78-98 66-86 (91)
25 2ke4_A CDC42-interacting prote 43.0 1.3E+02 0.0044 24.2 9.0 43 238-281 7-54 (98)
26 3plt_A Sphingolipid long chain 41.4 49 0.0017 30.8 6.4 43 84-126 99-148 (234)
27 1hlo_A Protein (transcription 41.2 18 0.00062 27.6 2.9 24 99-125 57-80 (80)
28 1k1f_A Breakpoint cluster regi 38.2 22 0.00076 27.3 2.9 27 102-128 33-59 (72)
29 1pyi_A Protein (pyrimidine pat 35.1 29 0.001 26.5 3.3 21 98-121 47-67 (96)
30 4i0x_B ESAT-6-like protein MAB 34.1 1.5E+02 0.0053 22.8 7.5 48 99-161 25-72 (103)
31 3coq_A Regulatory protein GAL4 33.4 36 0.0012 25.5 3.5 21 98-121 44-64 (89)
32 4abm_A Charged multivesicular 32.3 76 0.0026 24.6 5.2 36 84-119 41-76 (79)
33 2oqq_A Transcription factor HY 30.9 22 0.00076 24.9 1.7 9 98-106 2-10 (42)
34 3e1r_A Centrosomal protein of 26.7 40 0.0014 25.1 2.5 25 96-123 31-55 (58)
35 3lcv_B Sisomicin-gentamicin re 25.5 3.1E+02 0.011 26.1 9.2 19 74-94 32-50 (281)
36 1s16_A Topoisomerase IV subuni 24.6 19 0.00067 35.3 0.7 15 84-98 376-390 (390)
37 3i00_A HIP-I, huntingtin-inter 23.0 66 0.0023 26.9 3.6 28 94-124 35-62 (120)
38 3a2a_A Voltage-gated hydrogen 21.9 75 0.0026 23.5 3.2 21 99-122 25-45 (58)
39 2j1d_G DAAM1, disheveled-assoc 21.5 6.1E+02 0.021 25.2 13.8 84 262-345 302-389 (483)
40 1d66_A Protein (GAL4); protein 21.2 30 0.001 24.4 1.0 15 98-115 51-65 (66)
41 1nkp_B MAX protein, MYC proto- 21.0 79 0.0027 24.0 3.4 22 99-123 47-68 (83)
42 1gmj_A ATPase inhibitor; coile 20.9 2E+02 0.0067 22.8 5.7 27 95-122 45-71 (84)
43 3obv_E Protein diaphanous homo 20.7 5.1E+02 0.017 25.7 10.1 52 293-344 325-376 (457)
No 1
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=99.03 E-value=3e-10 Score=84.49 Aligned_cols=44 Identities=43% Similarity=0.590 Sum_probs=39.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 018238 78 KIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLEQELDRARQQ 124 (359)
Q Consensus 78 k~~rrlaqnreaArksrlrkkayvqqLE~sr~kl~qleqel~rar~q 124 (359)
|-++|+..|||+|+.||.|||+||+.||. ++.+|+.|-...+.+
T Consensus 1 kr~rR~~~NResA~rSR~RKk~~~~~LE~---~v~~L~~eN~~L~~~ 44 (55)
T 1dh3_A 1 KREVRLMKNREAARESRRKKKEYVKSLEN---RVAVLENQNKTLIEE 44 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 35799999999999999999999999999 899999998877765
No 2
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=98.60 E-value=5.4e-08 Score=74.20 Aligned_cols=42 Identities=38% Similarity=0.373 Sum_probs=31.1
Q ss_pred cchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018238 75 PFDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLEQELD 119 (359)
Q Consensus 75 ~~~k~~rrlaqnreaArksrlrkkayvqqLE~sr~kl~qleqel~ 119 (359)
++|+..+|-++||||||+||.||++|+..||. ++.+|+.|-.
T Consensus 6 ~~d~~~~KR~rNreAArrsR~RK~~~~~~Le~---~v~~L~~eN~ 47 (63)
T 2dgc_A 6 SSDPAALKRARNTEAARRSRARKLQRMKQLED---KVEELLSKNY 47 (63)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred cccHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 45667788889999999999999999999999 6655554443
No 3
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=98.35 E-value=6.8e-07 Score=67.44 Aligned_cols=40 Identities=38% Similarity=0.437 Sum_probs=33.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018238 78 KIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLEQELDR 120 (359)
Q Consensus 78 k~~rrlaqnreaArksrlrkkayvqqLE~sr~kl~qleqel~r 120 (359)
|..||..+||+||+|||.|||.|++.||. ++..|+.+-..
T Consensus 1 K~errr~rNr~AA~k~R~rKk~~~~~Le~---~v~~L~~~n~~ 40 (62)
T 1jnm_A 1 KAERKRMRNRIAASKSRKRKLERIARLEE---KVKTLKAQNSE 40 (62)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 45789999999999999999999999999 66666555443
No 4
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=98.27 E-value=1.8e-06 Score=65.39 Aligned_cols=40 Identities=33% Similarity=0.372 Sum_probs=33.5
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018238 78 KIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLEQELDR 120 (359)
Q Consensus 78 k~~rrlaqnreaArksrlrkkayvqqLE~sr~kl~qleqel~r 120 (359)
|-.+|+-.||+||+|||.|||.|++.||. ++.+|+.+-..
T Consensus 2 kr~rrrerNR~AA~rcR~rKk~~~~~Le~---~v~~L~~~n~~ 41 (63)
T 2wt7_A 2 KRRIRRERNKMAAAKCRNRRRELTDTLQA---ETDQLEDEKSA 41 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 56789999999999999999999999999 66665555443
No 5
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=98.26 E-value=1.5e-06 Score=65.29 Aligned_cols=38 Identities=37% Similarity=0.455 Sum_probs=31.9
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018238 79 IQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLEQELD 119 (359)
Q Consensus 79 ~~rrlaqnreaArksrlrkkayvqqLE~sr~kl~qleqel~ 119 (359)
-.+|+..||+||.|||.|||.|++.||. ++..|+.+-.
T Consensus 2 R~~r~erNr~AA~k~R~rKk~~~~~Le~---~~~~L~~~n~ 39 (61)
T 1t2k_D 2 RRKFLERNRAAASRSRQKRKVWVQSLEK---KAEDLSSLNG 39 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 4689999999999999999999999999 5555555443
No 6
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=98.01 E-value=5.2e-06 Score=64.60 Aligned_cols=39 Identities=38% Similarity=0.451 Sum_probs=34.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018238 79 IQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLEQELDR 120 (359)
Q Consensus 79 ~~rrlaqnreaArksrlrkkayvqqLE~sr~kl~qleqel~r 120 (359)
..+|-||||+|+|-.|-||++||..||. ++.+||.+.+.
T Consensus 9 ~~kR~~qNR~AQRafReRK~~~i~~LE~---~v~~le~~~~~ 47 (70)
T 1gd2_E 9 SSKRKAQNRAAQRAFRKRKEDHLKALET---QVVTLKELHSS 47 (70)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 4688899999999999999999999999 88888876554
No 7
>2y39_A Nickel and cobalt resistance protein CNRR; metal binding protein; 1.41A {Cupriavidus metallidurans} PDB: 2y3b_A 2y3d_A 2y3g_A* 2y3h_A 3epv_A*
Probab=97.41 E-value=0.0025 Score=54.09 Aligned_cols=97 Identities=16% Similarity=0.191 Sum_probs=76.9
Q ss_pred HhhcccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCChhhHHHHHHHHHHHHHHHHHHhH
Q 018238 233 KVLVPQLEPLTEQQLIDVCNLRQSCQQAEDALSQGMDKLQQTLAETVAAGQLAEVGYNPRTGTAMDKLEALVSFVSQADH 312 (359)
Q Consensus 233 kLL~~~LepLTeqQl~~I~~LqqstqqaEdaLsq~ma~LQqslad~~aa~~lg~g~~~~qm~~Am~kl~~Le~fl~qAD~ 312 (359)
.+|...| +||++|...|..+...-.....+|.++|......|++.+.++ ..|+.++..|++.+-. ..-.
T Consensus 13 ~~vh~~L-~Lt~~Q~~~leaie~~fa~~r~~le~emRaan~~La~ai~~~----~~~~p~V~aaid~~h~------~mG~ 81 (118)
T 2y39_A 13 EILHEAV-PLDANEREILELKEDAFAQRRREIETRLRAANGKLADAIAKN----PAWSPEVEAATQEVER------AAGD 81 (118)
T ss_dssp HHHHHHS-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CSCCHHHHHHHHHHHH------HHHH
T ss_pred HHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cccCHHHHHHHHHHHH------HHHH
Confidence 3444556 899999999999999999999999999999999999988432 2367788888854432 4445
Q ss_pred HHHHH---HHHHHhcCCHHHHHHHHHHHHHH
Q 018238 313 LRQET---LQQMSRILTTRQAARGLLALGEY 340 (359)
Q Consensus 313 LR~qT---L~ql~~ILTp~QAA~fLlAl~ey 340 (359)
|+..| +-.|..||||-|+..|=-.+.+-
T Consensus 82 LQkeTi~HvfeMR~VLtPeQ~~~fd~~vv~a 112 (118)
T 2y39_A 82 LQRATLVHVFEMRAGLKPEHRPAYDRVLIDA 112 (118)
T ss_dssp HHHHHHHHHHHHHHHSCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88889 66777999999999997666553
No 8
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=97.15 E-value=0.00045 Score=52.30 Aligned_cols=38 Identities=26% Similarity=0.378 Sum_probs=28.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018238 79 IQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLEQELD 119 (359)
Q Consensus 79 ~~rrlaqnreaArksrlrkkayvqqLE~sr~kl~qleqel~ 119 (359)
-.|+.-+||.||+++|.|||.+++.||. ++.+|+++-.
T Consensus 3 ~~rKr~rNr~AA~R~R~KKk~~~~~le~---~~~~L~~~N~ 40 (63)
T 1ci6_A 3 KLKKMEQNKTAATRYRQKKRAEQEALTG---ECKELEKKNE 40 (63)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred hHhHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 4678889999999999999999999999 5655555544
No 9
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=96.20 E-value=0.0014 Score=54.87 Aligned_cols=43 Identities=28% Similarity=0.403 Sum_probs=35.7
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 018238 77 DKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLEQELDRAR 122 (359)
Q Consensus 77 ~k~~rrlaqnreaArksrlrkkayvqqLE~sr~kl~qleqel~rar 122 (359)
=|-.||--+||++|++||.||.+.+..||. .+.+|.+|+++.+
T Consensus 36 lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~---e~~~L~~e~e~L~ 78 (107)
T 3a5t_A 36 LKQRRRTLKNRGYAASCRVKRVTQKEELEK---QKAELQQEVEKLA 78 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHTTTSSTTTTTT
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 377899999999999999999999999998 6666666655443
No 10
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=96.03 E-value=0.02 Score=45.21 Aligned_cols=45 Identities=29% Similarity=0.293 Sum_probs=33.9
Q ss_pred cCCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018238 72 ASKPFDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLEQELD 119 (359)
Q Consensus 72 ~~~~~~k~~rrlaqnreaArksrlrkkayvqqLE~sr~kl~qleqel~ 119 (359)
..+.|++-..|-..|.+||+|||-.+|.-.+.++. +..+|++|=.
T Consensus 9 ~dk~d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~---r~~~L~~eN~ 53 (78)
T 1gu4_A 9 VDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQH---KVLELTAENE 53 (78)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred cccCcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 34557788888999999999999999999888866 4444444433
No 11
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=95.49 E-value=0.042 Score=44.23 Aligned_cols=45 Identities=29% Similarity=0.293 Sum_probs=33.0
Q ss_pred cCCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018238 72 ASKPFDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLEQELD 119 (359)
Q Consensus 72 ~~~~~~k~~rrlaqnreaArksrlrkkayvqqLE~sr~kl~qleqel~ 119 (359)
..+.|++-..|-..|.+||||||-.+|.=.+.++. +..+||+|=.
T Consensus 9 ~dk~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~---r~~~Le~EN~ 53 (87)
T 1hjb_A 9 VDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQH---KVLELTAENE 53 (87)
T ss_dssp -CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred cCcccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 34557888888899999999999999988777765 4444444433
No 12
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=95.28 E-value=0.097 Score=45.56 Aligned_cols=97 Identities=21% Similarity=0.190 Sum_probs=60.8
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcccCCCCChhhHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 018238 241 PLTEQQLIDVCNLRQSCQQAEDALSQ-GMDKLQQTLAETVAAGQLAEVGYNPRTGTAMDKLEALVSFVSQADHLRQETLQ 319 (359)
Q Consensus 241 pLTeqQl~~I~~LqqstqqaEdaLsq-~ma~LQqslad~~aa~~lg~g~~~~qm~~Am~kl~~Le~fl~qAD~LR~qTL~ 319 (359)
+||++|..+|..|....+.+...+.. .++ .+-+.+.++.+.. ..+..-+ +.+...-.+.--.|.++-.
T Consensus 45 ~LTdeQkqqir~L~~~~r~~~~~~~~~~r~----~l~~Li~ad~fDe----aa~ral~---~~~~~~~~e~~v~r~k~~~ 113 (145)
T 3itf_A 45 SLTEHQRQQMRDLMQQARHEQPPVNVSELE----TMHRLVTAENFDE----NAVRAQA---EKMANEQIARQVEMAKVRN 113 (145)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSCCCCHHHHH----HHHHHHTCSSCCH----HHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhhhccHHHHH----HHHHHHccCCCCH----HHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 69999999999999888776554432 222 2333332222221 1222222 3333333444446788889
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHhc
Q 018238 320 QMSRILTTRQAARGLLALGEYFLRLRALS 348 (359)
Q Consensus 320 ql~~ILTp~QAA~fLlAl~ey~~rLR~Ls 348 (359)
+|..||||-|-+.|---+.+-...++.++
T Consensus 114 qiy~vLTPEQk~ql~e~~~~r~~~~~~~~ 142 (145)
T 3itf_A 114 QMYRLLTPEQQAVLNEKHQQRMEQLRDVT 142 (145)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHhhCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999998877777666666554
No 13
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=91.03 E-value=0.61 Score=37.73 Aligned_cols=44 Identities=27% Similarity=0.334 Sum_probs=34.6
Q ss_pred chHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 018238 76 FDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLEQELDRAR 122 (359)
Q Consensus 76 ~~k~~rrlaqnreaArksrlrkkayvqqLE~sr~kl~qleqel~rar 122 (359)
.=|-.||=-+||-+|.++|-||-.-+..||. ...+|..|++..+
T Consensus 25 ~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~---e~~~L~~e~~~L~ 68 (90)
T 2wt7_B 25 RLKQKRRTLKNRGYAQSCRYKRVQQKHHLEN---EKTQLIQQVEQLK 68 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 3467799999999999999999999999998 4455555555443
No 14
>3oeo_A Spheroplast protein Y; LTXXQ, extracytoplasmic stress response-related, signaling P; 2.70A {Escherichia coli}
Probab=87.14 E-value=0.24 Score=42.43 Aligned_cols=98 Identities=11% Similarity=0.094 Sum_probs=54.5
Q ss_pred ccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCChhhHHHHHHHHHHHHHHHHHHhHHHHH
Q 018238 237 PQLEPLTEQQLIDVCNLRQSCQQAEDALSQGMDKLQQTLAETVAAGQLAEVGYNPRTGTAMDKLEALVSFVSQADHLRQE 316 (359)
Q Consensus 237 ~~LepLTeqQl~~I~~LqqstqqaEdaLsq~ma~LQqslad~~aa~~lg~g~~~~qm~~Am~kl~~Le~fl~qAD~LR~q 316 (359)
..| +||++|...|..|.+..+..-.. .+....+.+.+.+.++.+. -..+...+++ +...-.+.--.|.+
T Consensus 30 ~~L-~LT~eQ~~qir~i~~~~r~~~~~---~~~~~r~~l~~Li~a~~fD----eaav~al~~~---~~~~~~e~~~~~~~ 98 (138)
T 3oeo_A 30 KDL-NLTDAQKQQIREIMKGQRDQMKR---PPLEERRAMHDIITSDTFD----KVKAEAQIAK---MEEQRKANMLAHME 98 (138)
T ss_dssp CCS-CCCTTHHHHHHHHHHHHSSSSCC---CCTTHHHHHHHHHTCSSCC----HHHHHHHHGG---GSHHHHHHHHHHHH
T ss_pred hcC-CCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhccCCCC----HHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 455 79999999999998877654221 1112223343333322222 1122222222 23333344446788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Q 018238 317 TLQQMSRILTTRQAARGLLALGEYFLRLR 345 (359)
Q Consensus 317 TL~ql~~ILTp~QAA~fLlAl~ey~~rLR 345 (359)
+..+|..||||-|-+.|---+.+-..+++
T Consensus 99 ~~~~~~~vLTPEQr~q~~~~~~kr~~~~~ 127 (138)
T 3oeo_A 99 TQNKIYNILTPEQKKQFNANFEKRLTERP 127 (138)
T ss_dssp HHHHHHTTSCHHHHHHHHHHTC-------
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999998877766555544
No 15
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=86.02 E-value=5.7 Score=35.39 Aligned_cols=76 Identities=17% Similarity=0.184 Sum_probs=50.5
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCChhhHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 018238 240 EPLTEQQLIDVCNLRQSCQQAEDALSQGMDKLQQTLAETVAAGQLAEVGYNPRTGTAMDKLEALVSFVSQADHLRQETLQ 319 (359)
Q Consensus 240 epLTeqQl~~I~~LqqstqqaEdaLsq~ma~LQqslad~~aa~~lg~g~~~~qm~~Am~kl~~Le~fl~qAD~LR~qTL~ 319 (359)
-+||++|..+|..|+++-+..-.+|.+.|...++.|.+-+.++.+.. ..+.....++..|.. +-...|.+.-.
T Consensus 66 LnLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~De----akI~aL~~Ei~~Lr~---qL~~~R~k~~~ 138 (175)
T 3lay_A 66 SPLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDT----AKINAVAKEMESLGQ---KLDEQRVKRDV 138 (175)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCH----HHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCH----HHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 37999999999999999999999999999999988877765433321 233333334444433 33345555555
Q ss_pred HHH
Q 018238 320 QMS 322 (359)
Q Consensus 320 ql~ 322 (359)
+|.
T Consensus 139 em~ 141 (175)
T 3lay_A 139 AMA 141 (175)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 16
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=84.26 E-value=1.4 Score=36.37 Aligned_cols=83 Identities=14% Similarity=0.158 Sum_probs=47.3
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcccCCCCChhhHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 018238 241 PLTEQQLIDVCNLRQSCQQAEDALS-QGMDKLQQTLAETVAAGQLAEVGYNPRTGTAMDKLEALVSFVSQADHLRQETLQ 319 (359)
Q Consensus 241 pLTeqQl~~I~~LqqstqqaEdaLs-q~ma~LQqslad~~aa~~lg~g~~~~qm~~Am~kl~~Le~fl~qAD~LR~qTL~ 319 (359)
+||++|...|..|....+..-.... ...+ .+-+.+.++.+.. ..+...++++.. .-.+.--.|.++=.
T Consensus 17 ~LTd~Qk~qir~L~~~~r~~~~~~~~~~r~----~m~~Li~ad~FDE----aaar~l~~~~~~---~~~e~~v~~~r~~~ 85 (108)
T 3o39_A 17 NLTDAQKQQIREIMKGQRDQMKRPPLEERR----AMHDIIASDTFDK----AKAEAQIAKMEE---QRKANMLAHMETQN 85 (108)
T ss_dssp CCCHHHHHHHHHHHHTTTTSCCCCCHHHHH----HHHHHHSSSSCCH----HHHHHHHHHTHH---HHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcccccHHHHH----HHHHHhccCCCCH----HHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 7999999999999887766533222 1122 2333343333322 122222233322 11222224667788
Q ss_pred HHHhcCCHHHHHHHH
Q 018238 320 QMSRILTTRQAARGL 334 (359)
Q Consensus 320 ql~~ILTp~QAA~fL 334 (359)
+|..||||-|-+.|-
T Consensus 86 qmy~lLTPEQk~q~~ 100 (108)
T 3o39_A 86 KIYNILTPEQKKQFN 100 (108)
T ss_dssp HHHTTSCHHHHHHHH
T ss_pred HHHHhCCHHHHHHHH
Confidence 999999999998864
No 17
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=79.91 E-value=0.87 Score=36.93 Aligned_cols=29 Identities=28% Similarity=0.350 Sum_probs=23.2
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 018238 77 DKIQRRLAQNREAARKSRLRKKAYVQQLE 105 (359)
Q Consensus 77 ~k~~rrlaqnreaArksrlrkkayvqqLE 105 (359)
-+-.||=.+||.||+++|.||..=+..||
T Consensus 61 ir~~RRR~KNr~AA~~CRkrK~~~~d~l~ 89 (92)
T 1skn_P 61 IRKIRRRGKNKVAARTCRQRRTDRHDKMS 89 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhhh
Confidence 45678889999999999999987655544
No 18
>2ksd_A Aerobic respiration control sensor protein ARCB; methods development, histidine kinase receptor, membrane domain, two-helical hairpin; NMR {Escherichia coli}
Probab=67.77 E-value=0.3 Score=41.22 Aligned_cols=30 Identities=40% Similarity=0.572 Sum_probs=13.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHhhccccc
Q 018238 100 YVQQLETSRLKLVQLEQELDRARQQGLYVG 129 (359)
Q Consensus 100 yvqqLE~sr~kl~qleqel~rar~qg~~~~ 129 (359)
-|+|||.||.+|+++=.+|+++|+|..++.
T Consensus 76 vVe~LE~SR~~Ls~~V~~Le~~r~~d~~ln 105 (115)
T 2ksd_A 76 VVEQLEESRQRLSRLVQKLEEMRERDLSLN 105 (115)
T ss_dssp HHHCCCSSCCCCCC----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 389999999999999999999999988774
No 19
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=62.45 E-value=3.8 Score=30.13 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH
Q 018238 97 KKAYVQQLETSRLKLVQLEQELDRAR 122 (359)
Q Consensus 97 kkayvqqLE~sr~kl~qleqel~rar 122 (359)
++.||++||. ++.+||..|+..+
T Consensus 47 ~~~~~~~Le~---ri~~Le~~l~~l~ 69 (72)
T 2er8_A 47 KRARNEAIEK---RFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHCC-
T ss_pred cHHHHHHHHH---HHHHHHHHHHHHh
Confidence 4589999999 9999999998644
No 20
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=61.98 E-value=7.7 Score=28.10 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=19.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHh
Q 018238 98 KAYVQQLETSRLKLVQLEQELDRARQ 123 (359)
Q Consensus 98 kayvqqLE~sr~kl~qleqel~rar~ 123 (359)
+.||+.||. ++.+||+.|...++
T Consensus 43 ~~~~~~L~~---ri~~Le~~l~~l~~ 65 (70)
T 1zme_C 43 TKYLQQLQK---DLNDKTEENNRLKA 65 (70)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHH
Confidence 469999999 99999999987664
No 21
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=59.71 E-value=11 Score=27.92 Aligned_cols=39 Identities=41% Similarity=0.346 Sum_probs=23.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 018238 81 RRLAQNREAARKSRLRKKAYVQQLETSRLKLVQLEQELDRAR 122 (359)
Q Consensus 81 rrlaqnreaArksrlrkkayvqqLE~sr~kl~qleqel~rar 122 (359)
++--.||-|+||+|.+=| ++||--|---+---.|-.|.|
T Consensus 4 ~kryknr~asrk~rakfk---n~lqh~r~vaaaks~en~rlr 42 (63)
T 2c9l_Y 4 IKRYKNRVAARKSRAKFK---QLLQHYREVAAAKSSENDRLR 42 (63)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhcccchHHH
Confidence 344589999999999855 555544433333333444444
No 22
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=55.28 E-value=16 Score=25.33 Aligned_cols=27 Identities=33% Similarity=0.497 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 018238 97 KKAYVQQLETSRLKLVQLEQELDRARQ 123 (359)
Q Consensus 97 kkayvqqLE~sr~kl~qleqel~rar~ 123 (359)
-|-|||.||.--..|..|..-|.-|+.
T Consensus 8 lknyiqeleernaelknlkehlkfaka 34 (46)
T 3he4_B 8 LKNYIQELEERNAELKNLKEHLKFAKA 34 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHhHHHHHHHHHH
Confidence 378999999988888888777776663
No 23
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=54.34 E-value=6.1 Score=29.51 Aligned_cols=27 Identities=22% Similarity=0.404 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 018238 92 KSRLRKKAYVQQLETSRLKLVQLEQELDRA 121 (359)
Q Consensus 92 ksrlrkkayvqqLE~sr~kl~qleqel~ra 121 (359)
+.++.++.||+.||. +|.+||..|...
T Consensus 51 ~~~~~~~~~~~~L~~---ri~~LE~~l~~l 77 (81)
T 1hwt_C 51 EKELLKDNELKKLRE---RVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHTTC---
T ss_pred ccccchHHHHHHHHH---HHHHHHHHHHHh
Confidence 345667789999999 999999888754
No 24
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=49.15 E-value=2.6 Score=34.09 Aligned_cols=21 Identities=38% Similarity=0.389 Sum_probs=17.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHH
Q 018238 78 KIQRRLAQNREAARKSRLRKK 98 (359)
Q Consensus 78 k~~rrlaqnreaArksrlrkk 98 (359)
+-.||=.+||.||+++|.||.
T Consensus 66 rdiRRRgKNKvAAqnCRKRKl 86 (91)
T 2kz5_A 66 RDIRRRGKNKVAAQNYRKRKL 86 (91)
T ss_dssp HHHHHHHHHHHHTTSCCCCCC
T ss_pred HHHHHHhhhHHHHHHHHHHHH
Confidence 445888999999999999974
No 25
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=43.04 E-value=1.3e+02 Score=24.19 Aligned_cols=43 Identities=14% Similarity=0.207 Sum_probs=32.9
Q ss_pred cCCCCcHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018238 238 QLEPLTEQQL-----IDVCNLRQSCQQAEDALSQGMDKLQQTLAETVAA 281 (359)
Q Consensus 238 ~LepLTeqQl-----~~I~~LqqstqqaEdaLsq~ma~LQqslad~~aa 281 (359)
...+|.++|. .+|+.|+..+.++.++ .+||.+++......+..
T Consensus 7 d~s~LPpeqRkkkL~~Ki~el~~ei~ke~~~-regl~Km~~vY~~nP~~ 54 (98)
T 2ke4_A 7 DFSHLPPEQQRKRLQQQLEERSRELQKEVDQ-REALKKMKDVYEKTPQM 54 (98)
T ss_dssp CSSSSCHHHHHHHHHHHHHHHHHHHHHHHHH-HTHHHHHHHHHHHCGGG
T ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCcc
Confidence 3456888875 4688888888888887 77888988888777643
No 26
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=41.37 E-value=49 Score=30.83 Aligned_cols=43 Identities=37% Similarity=0.439 Sum_probs=28.8
Q ss_pred HhhHHHH-HHHHHHHHHHHHHHHHhH------HHHHHHHHHHHHHHhhcc
Q 018238 84 AQNREAA-RKSRLRKKAYVQQLETSR------LKLVQLEQELDRARQQGL 126 (359)
Q Consensus 84 aqnreaA-rksrlrkkayvqqLE~sr------~kl~qleqel~rar~qg~ 126 (359)
..|||.. ..+|-||+.-..++..-. .||..|||||.||-+..+
T Consensus 99 IR~~E~svqp~R~~R~~l~~~I~kLk~k~P~s~kl~~LeqELvraEae~l 148 (234)
T 3plt_A 99 IRNIEASVQPSRDRKEKITDEIAHLKYKDPQSTKIPVLEQELVRAEAESL 148 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHhh
Confidence 4677766 556666666555554211 467899999999987653
No 27
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=41.21 E-value=18 Score=27.62 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=20.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhc
Q 018238 99 AYVQQLETSRLKLVQLEQELDRARQQG 125 (359)
Q Consensus 99 ayvqqLE~sr~kl~qleqel~rar~qg 125 (359)
.||..|+. ++..|+.|++..|+|+
T Consensus 57 ~YI~~L~~---~~~~L~~e~~~L~~~n 80 (80)
T 1hlo_A 57 EYIQYMRR---KNHTHQQDIDDLKRQN 80 (80)
T ss_dssp HHHHHHHH---HHHHHHHHHHTHHHHC
T ss_pred HHHHHHHH---HHHHHHHHHHHHHhcC
Confidence 69999999 8888999999888764
No 28
>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil, BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP: a.147.1.1
Probab=38.15 E-value=22 Score=27.33 Aligned_cols=27 Identities=33% Similarity=0.602 Sum_probs=21.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhhcccc
Q 018238 102 QQLETSRLKLVQLEQELDRARQQGLYV 128 (359)
Q Consensus 102 qqLE~sr~kl~qleqel~rar~qg~~~ 128 (359)
|.||.+|..+..||||+-+-|=-=+|+
T Consensus 33 qeLe~Ck~sIrrLE~evn~ErFrmIYL 59 (72)
T 1k1f_A 33 QELERAKASIRRLEQEVNQERFRMIYL 59 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 679999999999999998877555554
No 29
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=35.14 E-value=29 Score=26.49 Aligned_cols=21 Identities=29% Similarity=0.411 Sum_probs=18.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHH
Q 018238 98 KAYVQQLETSRLKLVQLEQELDRA 121 (359)
Q Consensus 98 kayvqqLE~sr~kl~qleqel~ra 121 (359)
+.||+.||. +|.+||..|...
T Consensus 47 ~~~~~~Le~---rl~~le~~l~~~ 67 (96)
T 1pyi_A 47 RSYVFFLED---RLAVMMRVLKEY 67 (96)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHT
T ss_pred HHHHHHHHH---HHHHHHHHHHHh
Confidence 459999999 999999999853
No 30
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=34.14 E-value=1.5e+02 Score=22.80 Aligned_cols=48 Identities=19% Similarity=0.409 Sum_probs=36.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhcccccCCCCCCCCCCCCccchHHHHHHHHHHHHHhHH
Q 018238 99 AYVQQLETSRLKLVQLEQELDRARQQGLYVGSGVEGVHMGFSGTVNSAFEMEYGHWLEEQSRQ 161 (359)
Q Consensus 99 ayvqqLE~sr~kl~qleqel~rar~qg~~~~~~~~~~~~~~~~~~~~~F~~~Y~~Wleeq~r~ 161 (359)
.+..+|+. .|.+|+..++.....|..-| .....|...+.+|-....+.
T Consensus 25 ~~~~~i~~---~l~~L~~~v~~L~~~g~W~G------------~A~~ay~~~~~~W~~~a~~l 72 (103)
T 4i0x_B 25 GFKEFVTE---NLDQLESRAQKLVQSGQWAG------------AAAAAYSQAHKEWMDAAREL 72 (103)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHTSSCH------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHHhcCCCeec------------hHHHHHHHHHHHHHHHHHHH
Confidence 67788888 89999999998776654433 34669999999997665544
No 31
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=33.38 E-value=36 Score=25.49 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=18.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHH
Q 018238 98 KAYVQQLETSRLKLVQLEQELDRA 121 (359)
Q Consensus 98 kayvqqLE~sr~kl~qleqel~ra 121 (359)
+.||+.||. ++.+||..|+..
T Consensus 44 ~~~~~~L~~---r~~~le~~l~~l 64 (89)
T 3coq_A 44 RAHLTEVES---RLERLEQLFLLI 64 (89)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHHHHHHHHH
Confidence 469999999 999999999864
No 32
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=32.35 E-value=76 Score=24.56 Aligned_cols=36 Identities=31% Similarity=0.345 Sum_probs=27.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018238 84 AQNREAARKSRLRKKAYVQQLETSRLKLVQLEQELD 119 (359)
Q Consensus 84 aqnreaArksrlrkkayvqqLE~sr~kl~qleqel~ 119 (359)
..|+.+|-..=-|||.|=++|+.----+.+||+-+.
T Consensus 41 ~knK~~Al~aLkrKK~~E~qL~q~~~ql~~LE~q~~ 76 (79)
T 4abm_A 41 TKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQRE 76 (79)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666778888888887778888988764
No 33
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=30.90 E-value=22 Score=24.90 Aligned_cols=9 Identities=44% Similarity=0.818 Sum_probs=8.0
Q ss_pred HHHHHHHHH
Q 018238 98 KAYVQQLET 106 (359)
Q Consensus 98 kayvqqLE~ 106 (359)
|||+-.||+
T Consensus 2 KaYl~eLE~ 10 (42)
T 2oqq_A 2 SAYLSELEN 10 (42)
T ss_dssp CHHHHHHHH
T ss_pred chhHHHHHH
Confidence 799999988
No 34
>3e1r_A Centrosomal protein of 55 kDa; CEP55, ALIX, cytokinesis, ESCRT, alternative splicing, cell cycle, cell division, coiled coil, mitosis; 2.00A {Homo sapiens}
Probab=26.70 E-value=40 Score=25.06 Aligned_cols=25 Identities=28% Similarity=0.551 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 018238 96 RKKAYVQQLETSRLKLVQLEQELDRARQ 123 (359)
Q Consensus 96 rkkayvqqLE~sr~kl~qleqel~rar~ 123 (359)
-+.|||+-|+. |+..|||.+.-|.+
T Consensus 31 qReayV~gll~---~i~eleq~~~~a~~ 55 (58)
T 3e1r_A 31 QREVYVKGLLA---KIFELEKKTETAAH 55 (58)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHC----
T ss_pred HHHHHHHHHHH---HHHHHHHHHHhhhh
Confidence 34589999998 89999998876553
No 35
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=25.48 E-value=3.1e+02 Score=26.06 Aligned_cols=19 Identities=37% Similarity=0.316 Sum_probs=15.2
Q ss_pred CcchHHHHHHHhhHHHHHHHH
Q 018238 74 KPFDKIQRRLAQNREAARKSR 94 (359)
Q Consensus 74 ~~~~k~~rrlaqnreaArksr 94 (359)
..++.|.|||+ |+++.++|
T Consensus 32 ~v~p~tVrrl~--~~~~~~~~ 50 (281)
T 3lcv_B 32 TVAPATVRRLA--RAALVAAR 50 (281)
T ss_dssp TBCHHHHHHHH--HHHHHHTT
T ss_pred ccCHHHHHHHH--HHHHHhcC
Confidence 46899999999 56777776
No 36
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=24.60 E-value=19 Score=35.35 Aligned_cols=15 Identities=53% Similarity=0.523 Sum_probs=7.0
Q ss_pred HhhHHHHHHHHHHHH
Q 018238 84 AQNREAARKSRLRKK 98 (359)
Q Consensus 84 aqnreaArksrlrkk 98 (359)
|+-||||||.|-|||
T Consensus 376 a~aR~aa~karer~~ 390 (390)
T 1s16_A 376 AQRRMRAAKKVVRKK 390 (390)
T ss_dssp HHHHHHHC-------
T ss_pred HHHHHHHHHHHhhcC
Confidence 578999999999876
No 37
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=23.01 E-value=66 Score=26.87 Aligned_cols=28 Identities=21% Similarity=0.341 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 018238 94 RLRKKAYVQQLETSRLKLVQLEQELDRARQQ 124 (359)
Q Consensus 94 rlrkkayvqqLE~sr~kl~qleqel~rar~q 124 (359)
...--.||-+|+. ++++||.||.-.|.+
T Consensus 35 ~~E~q~~v~ql~~---~i~~Le~eL~e~r~~ 62 (120)
T 3i00_A 35 KTESQRVVLQLKG---HVSELEADLAEQQHL 62 (120)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 4445589999999 999999999987743
No 38
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=21.90 E-value=75 Score=23.51 Aligned_cols=21 Identities=38% Similarity=0.463 Sum_probs=17.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHH
Q 018238 99 AYVQQLETSRLKLVQLEQELDRAR 122 (359)
Q Consensus 99 ayvqqLE~sr~kl~qleqel~rar 122 (359)
+-||+||- .-++.|||+.|.+
T Consensus 25 ~kv~~Le~---~c~e~eQEieRL~ 45 (58)
T 3a2a_A 25 AKIQHLEF---SCSEKEQEIERLN 45 (58)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHHH
Confidence 56888988 6677899999875
No 39
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A
Probab=21.45 E-value=6.1e+02 Score=25.17 Aligned_cols=84 Identities=8% Similarity=0.101 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCCChh----hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018238 262 DALSQGMDKLQQTLAETVAAGQLAEVGYNP----RTGTAMDKLEALVSFVSQADHLRQETLQQMSRILTTRQAARGLLAL 337 (359)
Q Consensus 262 daLsq~ma~LQqslad~~aa~~lg~g~~~~----qm~~Am~kl~~Le~fl~qAD~LR~qTL~ql~~ILTp~QAA~fLlAl 337 (359)
..|..++..++..+...-..+.-....+.. -+..|-.++..|+..+..+...-..++.-..+=-+..+.-+|+--+
T Consensus 302 ~~L~~~l~~v~~~l~~~~~~~~~~~d~f~~~m~~Fl~~a~~~~~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~~~fF~~~ 381 (483)
T 2j1d_G 302 STLRSGLKAVETELEYQKSQPPQPGDKFVSVVSQFITVASFSFSDVEDLLAEAKDLFTKAVKHFGEEAGKIQPDEFFGIF 381 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence 345566666666554332111111112222 2455667888888888888877777776655432223445677666
Q ss_pred HHHHHHHH
Q 018238 338 GEYFLRLR 345 (359)
Q Consensus 338 ~ey~~rLR 345 (359)
.+|...+.
T Consensus 382 ~~F~~~f~ 389 (483)
T 2j1d_G 382 DQFLQAVS 389 (483)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655443
No 40
>1d66_A Protein (GAL4); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.70A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1aw6_A
Probab=21.23 E-value=30 Score=24.40 Aligned_cols=15 Identities=33% Similarity=0.605 Sum_probs=12.1
Q ss_pred HHHHHHHHHhHHHHHHHH
Q 018238 98 KAYVQQLETSRLKLVQLE 115 (359)
Q Consensus 98 kayvqqLE~sr~kl~qle 115 (359)
+.||++||. +|.+||
T Consensus 51 ~~~~~~Le~---rl~~LE 65 (66)
T 1d66_A 51 RAHLTEVES---RLERLE 65 (66)
T ss_dssp HHHHHHHHH---HHTTC-
T ss_pred HHHHHHHHH---HHHHHc
Confidence 579999999 888887
No 41
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=20.96 E-value=79 Score=24.02 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=13.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHh
Q 018238 99 AYVQQLETSRLKLVQLEQELDRARQ 123 (359)
Q Consensus 99 ayvqqLE~sr~kl~qleqel~rar~ 123 (359)
.||..|+. +...|+.|++..++
T Consensus 47 ~YI~~L~~---~~~~l~~e~~~L~~ 68 (83)
T 1nkp_B 47 EYIQYMRR---KNHTHQQDIDDLKR 68 (83)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHHHH
Confidence 48888887 55555555555544
No 42
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=20.93 E-value=2e+02 Score=22.82 Aligned_cols=27 Identities=19% Similarity=0.457 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 018238 95 LRKKAYVQQLETSRLKLVQLEQELDRAR 122 (359)
Q Consensus 95 lrkkayvqqLE~sr~kl~qleqel~rar 122 (359)
||||. .++|+--.-.+..||.++.|.+
T Consensus 45 LKkkl-~~el~~h~~ei~~le~~i~rhk 71 (84)
T 1gmj_A 45 LKKHK-ENEISHHAKEIERLQKEIERHK 71 (84)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 56555 5566666666666777776654
No 43
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D
Probab=20.75 E-value=5.1e+02 Score=25.73 Aligned_cols=52 Identities=12% Similarity=0.019 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Q 018238 293 TGTAMDKLEALVSFVSQADHLRQETLQQMSRILTTRQAARGLLALGEYFLRL 344 (359)
Q Consensus 293 m~~Am~kl~~Le~fl~qAD~LR~qTL~ql~~ILTp~QAA~fLlAl~ey~~rL 344 (359)
+..|-.++..|......+..+-..++.-..+=-...+.-+|+--+.+|...+
T Consensus 325 l~~A~~~~~~L~~~~~~~~~~~~~l~~yFgedp~~~~~~eFF~~~~~F~~~f 376 (457)
T 3obv_E 325 VKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNMF 376 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHH
Confidence 4556677777888887777666555555442211223345666666655443
Done!